Peak file = 0001.bed
	Genome = hg19
	Organism = human
	Peak/BED file conversion summary:
		BED/Header formatted lines: 41269
		peakfile formatted lines: 0
		Duplicated Peak IDs: 0

	Peak File Statistics:
		Total Peaks: 41269
		Redundant Peak IDs: 0
		Peaks lacking information: 0 (need at least 5 columns per peak)
		Peaks with misformatted coordinates: 0 (should be integer)
		Peaks with misformatted strand: 0 (should be either +/- or 0/1)

	Peak file looks good!

	Reading Positions...
	-----------------------
	Finding Closest TSS...
	Annotating:.........................................
		Annotation	Number of peaks	Total size (bp)	Log2 Enrichment
		3UTR	322.0	21956084	0.138
		miRNA	0.0	48690	-15.332
		ncRNA	201.0	5152412	1.550
		TTS	625.0	28138040	0.737
		pseudo	63.0	1886928	1.325
		Exon	1063.0	34396507	1.214
		Intron	16485.0	1195376938	0.050
		Intergenic	18139.0	1774096161	-0.382
		Promoter	3907.0	31371652	3.225
		5UTR	426.0	2505589	3.674
		snoRNA	0.0	119	-15.332
		snRNA	0.0	105	-15.332
		rRNA	4.0	10999	4.771
	NOTE: If this part takes more than 2 minutes, there is a good chance
		your machine ran out of memory: consider hitting ctrl+C and rerunning
		the command with "-noann"
	To capture annotation stats in a file, use "-annStats <filename>" next time
	Annotating:...............................................................
		Annotation	Number of peaks	Total size (bp)	Log2 Enrichment
		3UTR	322.0	21956084	0.140
		Other	277.0	3971160	2.389
		Unknown?	1.0	18108	2.053
		RNA	4.0	115354	1.381
		miRNA	0.0	48690	-15.333
		ncRNA	201.0	5152412	1.551
		TTS	625.0	28138040	0.739
		LINE	4012.0	625784268	-1.054
		LINE?	0.0	10448	-15.333
		srpRNA	0.0	255274	-15.333
		SINE	1891.0	381588385	-1.426
		RC	6.0	443678	0.023
		tRNA	25.0	93388	4.330
		DNA?	6.0	265211	0.765
		pseudo	63.0	1886928	1.327
		DNA	769.0	96294594	-0.737
		Exon	1063.0	34396507	1.215
		Intron	11170.0	634618599	0.403
		Intergenic	10935.0	905380781	-0.140
		Promoter	3905.0	31371652	3.225
		5UTR	426.0	2505589	3.675
		snoRNA	0.0	119	-15.333
		LTR?	1.0	21177	1.827
		scRNA	5.0	117368	1.678
		CpG-Island	2096.0	9452393	4.058
		Low_complexity	75.0	15535201	-1.463
		LTR	3176.0	260938283	-0.129
		Simple_repeat	106.0	24991227	-1.650
		snRNA	8.0	323419	0.894
		Unknown	19.0	1253251	0.188
		SINE?	0.0	43187	-15.333
		Satellite	75.0	12871062	-1.192
		rRNA	7.0	184683	1.510
	Counting Tags in Peaks from each directory...
	Organism: human
	Loading Gene Informaiton...
	Outputing Annotation File...
PeakID (cmd=annotatePeaks.pl 0001.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
19-PTNLD28-TUMOR_peak_95609	chr7	136074807	136075003	+	56.57137	NA	Intergenic	L1MC4a|LINE|L1	-412701	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_29649	chr14	25679179	25679327	+	53.21231	NA	Intergenic	L1PA2|LINE|L1	-160158	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_2209	chr1	33586148	33586511	+	50.31456	NA	TTS (NM_052998)	TTS (NM_052998)	39615	NM_001293562	113451	Hs.101807	NM_052998	HPRD:17657	AZIN2	ADC|AZI2|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_89977	chr6	150623461	150623661	+	49.92425	NA	Intergenic	Intergenic	-66467	NM_203395	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_69298	chr3	89923604	89923781	+	46.81052	NA	Intergenic	L1PA2|LINE|L1	767018	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_64333	chr22	19182367	19182609	+	44.98494	NA	intron (NM_007098, intron 26 of 32)	intron (NM_007098, intron 26 of 32)	-16112	NR_046298	6576	Hs.111024	NM_005984	HPRD:01832	SLC25A1	CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_3514	chr1	53040310	53040580	+	44.77516	NA	Intergenic	L2c|LINE|L2	-21683	NM_015269	23318	Hs.655407	NM_015269	HPRD:15700	ZCCHC11	PAPD3|TUT4	zinc finger, CCHC domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_100463	chr8	123588092	123588350	+	44.64532	NA	Intergenic	Intergenic	-205680	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_31511	chr14	81630597	81630813	+	44.48400	NA	Intergenic	Intergenic	38473	NR_003021	677845	Hs.693251	NR_003021		SNORA79	ACA65	small nucleolar RNA, H/ACA box 79	snoRNA
19-PTNLD28-TUMOR_peak_83534	chr5	158247399	158247600	+	44.32721	NA	intron (NM_001290360, intron 8 of 15)	intron (NM_001290360, intron 8 of 15)	279289	NM_001290360	1879	Hs.573143	NM_024007	HPRD:01256	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
19-PTNLD28-TUMOR_peak_89551	chr6	134965969	134966225	+	44.02382	NA	Intergenic	Intergenic	206569	NR_038218	154092	Hs.223718	NR_038216		LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
19-PTNLD28-TUMOR_peak_36862	chr16	23739112	23739439	+	43.67665	NA	Intergenic	Intergenic	-14454	NM_033266	10595	Hs.592041	NM_033266	HPRD:04944	ERN2	IRE1-BETA|IRE1b	endoplasmic reticulum to nucleus signaling 2	protein-coding
19-PTNLD28-TUMOR_peak_43872	chr17	78143659	78143891	+	43.56232	NA	promoter-TSS (NR_047566)	promoter-TSS (NR_047566)	-16	NR_047566	79092	Hs.675480	NM_024110	HPRD:06235	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_12430	chr10	24491229	24491622	+	43.10657	NA	intron (NM_001098500, intron 2 of 18)	intron (NM_001098500, intron 2 of 18)	-6295	NM_001282767	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_65049	chr22	30578492	30578726	+	43.07574	NA	Intergenic	L2a|LINE|L2	64231	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_7403	chr1	157258757	157259069	+	43.00253	NA	Intergenic	MER45A|DNA|hAT-Tip100	-150530	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_92556	chr7	51191383	51191636	+	42.58261	NA	intron (NM_001287436, intron 6 of 13)	intron (NM_001287436, intron 6 of 13)	193006	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_9663	chr1	205641346	205641550	+	41.94883	NA	intron (NM_033102, intron 1 of 4)	intron (NM_033102, intron 1 of 4)	8182	NM_033102	85414	Hs.278695	NM_033102	HPRD:16312	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45, member 3	protein-coding
19-PTNLD28-TUMOR_peak_99111	chr8	69931692	69931857	+	41.87211	NA	intron (NR_039986, intron 2 of 4)	L1PA3|LINE|L1	84651	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LOC100505718	-	uncharacterized LOC100505718	ncRNA
19-PTNLD28-TUMOR_peak_79482	chr5	35938693	35939025	+	41.63147	NA	promoter-TSS (NM_001042625)	promoter-TSS (NM_001042625)	22	NM_144647	133690	Hs.55150	NM_144647	HPRD:14506	CAPSL	-	calcyphosine-like	protein-coding
19-PTNLD28-TUMOR_peak_35292	chr15	92612849	92613125	+	41.56840	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	216049	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_88886	chr6	100379243	100379414	+	41.36244	NA	intron (NM_032503, intron 5 of 5)	L1PA3|LINE|L1	-62586	NR_038384	728012	Hs.434366	NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82822	chr5	141909267	141909474	+	41.34696	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	84356	NM_033137	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_5993	chr1	120416311	120416604	+	41.18578	NA	Intergenic	Intergenic	22690	NM_021794	11085	Hs.283011	NM_021794	HPRD:05307	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
19-PTNLD28-TUMOR_peak_65115	chr22	31451652	31451817	+	41.09098	NA	Intergenic	Intergenic	-25548	NM_006932	6525	Hs.149098	NM_006932	HPRD:03675	SMTN	-	smoothelin	protein-coding
19-PTNLD28-TUMOR_peak_33736	chr15	58754826	58755017	+	40.46880	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	30746	NM_000236	3990	Hs.654472	NM_000236	HPRD:01058	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase, hepatic	protein-coding
19-PTNLD28-TUMOR_peak_39291	chr16	87681545	87682114	+	40.26921	NA	intron (NR_073379, intron 2 of 5)	intron (NR_073379, intron 2 of 5)	45336	NM_001271605	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_84050	chr5	172729540	172729757	+	40.26844	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	26858	NM_003714	8614	Hs.233160	NM_003714	HPRD:04717	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
19-PTNLD28-TUMOR_peak_57515	chr2	192176469	192176639	+	40.23128	NA	intron (NM_001130158, intron 3 of 30)	intron (NM_001130158, intron 3 of 30)	66300	NM_001161819	4430	Hs.439620	NM_012223	HPRD:08407	MYO1B	myr1	myosin IB	protein-coding
19-PTNLD28-TUMOR_peak_6048	chr1	120916814	120917067	+	40.16653	NA	Intergenic	Intergenic	10906	NR_027337	337875	Hs.742189	NR_027337		HIST2H2BA	-	histone cluster 2, H2ba (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_83526	chr5	157928014	157928254	+	40.14709	NA	Intergenic	Intergenic	-91353	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_17428	chr11	16902813	16903184	+	39.81957	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	132965	NM_175058	144100	Hs.12332	NM_175058	HPRD:15142	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
19-PTNLD28-TUMOR_peak_107945	chrX	38206458	38206723	+	39.67900	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-5146	NM_000531	5009	Hs.117050	NM_000531	HPRD:02408	OTC	OCTD	ornithine carbamoyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_31441	chr14	77686752	77686999	+	39.66972	NA	intron (NM_020431, intron 5 of 23)	intron (NM_020431, intron 5 of 23)	38773	NM_020431	57156	Hs.22452	NM_020431	HPRD:16617	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
19-PTNLD28-TUMOR_peak_47119	chr19	9180814	9181070	+	39.37517	NA	Intergenic	Intergenic	-22979	NM_001004456	125963	Hs.553577	NM_001004456	HPRD:17689	OR1M1	OR19-5|OR19-6	olfactory receptor, family 1, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_88707	chr6	89940390	89940558	+	39.01573	NA	intron (NM_001267582, intron 1 of 11)	L1PA2|LINE|L1	533	NM_001267582	2569	Hs.99927	NM_002042	HPRD:15921	GABRR1	-	gamma-aminobutyric acid (GABA) A receptor, rho 1	protein-coding
19-PTNLD28-TUMOR_peak_29874	chr14	35147178	35147372	+	38.86904	NA	Intergenic	Intergenic	35748	NM_021914	1073	Hs.180141	NM_021914	HPRD:03262	CFL2	NEM7	cofilin 2 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_94642	chr7	104630156	104630335	+	38.72245	NA	non-coding (NR_039981, exon 1 of 1)	non-coding (NR_039981, exon 1 of 1)	1367	NR_039981	100216546	Hs.369356	NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
19-PTNLD28-TUMOR_peak_12521	chr10	26097410	26097619	+	38.65319	NA	Intergenic	Intergenic	125125	NR_120650	101929073	Hs.409816	NR_120650		LOC101929073	-	uncharacterized LOC101929073	ncRNA
19-PTNLD28-TUMOR_peak_59761	chr20	9926199	9926477	+	38.65319	NA	Intergenic	AluJr|SINE|Alu	-40643	NR_109861	101929371	Hs.619265	NR_109861	ENSG00000243961	LOC101929371	-	uncharacterized LOC101929371	ncRNA
19-PTNLD28-TUMOR_peak_44492	chr18	9422932	9423155	+	38.63271	NA	Intergenic	LTR10F|LTR|ERV1	-52487	NM_006788	10928	Hs.528993	NM_006788	HPRD:09013	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81745	chr5	119025931	119026077	+	38.31145	NA	Intergenic	L1HS|LINE|L1	60750	NM_182761	340069	Hs.713304	NM_182761	HPRD:14174	FAM170A	ZNFD	family with sequence similarity 170, member A	protein-coding
19-PTNLD28-TUMOR_peak_33386	chr15	44781754	44781958	+	38.19925	NA	intron (NM_016396, intron 4 of 12)	L2c|LINE|L2	47242	NR_034171	645212	Hs.594287	NR_034170		EIF3J-AS1	-	EIF3J antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_54719	chr2	107198644	107198857	+	38.17574	NA	Intergenic	Intergenic	-113949	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_15109	chr10	99302966	99303192	+	38.10428	NA	intron (NM_024954, intron 1 of 2)	intron (NM_024954, intron 1 of 2)	-29119	NM_001291218	26287	Hs.73708	NM_020349	HPRD:12460	ANKRD2	ARPP	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding
19-PTNLD28-TUMOR_peak_59083	chr2	238346831	238347018	+	38.06843	NA	Intergenic	Intergenic	-24074	NM_057166	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_27242	chr12	132166621	132166967	+	38.02779	NA	Intergenic	Intergenic	-28838	NM_004592	6433	Hs.308171	NM_004592	HPRD:09055	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot family	protein-coding
19-PTNLD28-TUMOR_peak_39042	chr16	83946821	83947039	+	38.02671	NA	intron (NM_012213, intron 4 of 4)	intron (NM_012213, intron 4 of 4)	14200	NM_012213	23417	Hs.644610	NM_012213	HPRD:05999	MLYCD	MCD	malonyl-CoA decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_103493	chr9	67623326	67623804	+	37.93105	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-155558	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_103672	chr9	71720095	71720345	+	37.90888	NA	Intergenic	Intergenic	-15960	NM_001170414	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_84135	chr5	173930702	173931079	+	37.74998	NA	intron (NR_125806, intron 2 of 5)	intron (NR_125806, intron 2 of 5)	167533	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_57265	chr2	181521292	181521475	+	37.73359	NA	Intergenic	Intergenic	-35448	NR_104322	101669767		NR_104319		SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_104881	chr9	100466063	100466778	+	37.72866	NA	Intergenic	Intergenic	-6729	NM_000380	7507	Hs.654364	NM_000380	HPRD:02045	XPA	XP1|XPAC	xeroderma pigmentosum, complementation group A	protein-coding
19-PTNLD28-TUMOR_peak_81163	chr5	92695145	92695728	+	37.59789	NA	Intergenic	Intergenic	211613	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109927	chrX	153245832	153246053	+	37.59581	NA	promoter-TSS (NR_036174)	promoter-TSS (NR_036174)	-606	NR_036174	100422987		NR_036174	miRBase:MI0014252	MIR3202-1	-	microRNA 3202-1	ncRNA
19-PTNLD28-TUMOR_peak_94376	chr7	100720714	100721170	+	37.49415	NA	Intergenic	Intergenic	-7844	NM_030961	81844	Hs.521092	NM_030961	HPRD:10284	TRIM56	RNF109	tripartite motif containing 56	protein-coding
19-PTNLD28-TUMOR_peak_57246	chr2	180434498	180434920	+	37.28920	NA	intron (NM_152520, intron 3 of 9)	intron (NM_152520, intron 3 of 9)	-7394	NM_001113398	151126	Hs.655005	NM_152520	HPRD:15823	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
19-PTNLD28-TUMOR_peak_28089	chr13	45629767	45629990	+	37.08585	NA	Intergenic	Intergenic	-50536	NR_120424	101929259	Hs.638490	NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
19-PTNLD28-TUMOR_peak_25383	chr12	76849595	76849766	+	37.08585	NA	intron (NM_020841, intron 3 of 23)	intron (NM_020841, intron 3 of 23)	103909	NM_020841	114882	Hs.430849	NM_020841	HPRD:09478	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein-like 8	protein-coding
19-PTNLD28-TUMOR_peak_34763	chr15	80364739	80364931	+	37.08585	NA	promoter-TSS (NM_001242916)	promoter-TSS (NM_001242916)	-68	NM_001242915	54469	Hs.596679	NM_019006	HPRD:18314	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger, AN1-type domain 6	protein-coding
19-PTNLD28-TUMOR_peak_17661	chr11	22806849	22807047	+	37.08585	NA	intron (NM_005256, intron 6 of 6)	intron (NM_005256, intron 6 of 6)	44434	NM_148893	258010	Hs.349096	NM_148893		SVIP	-	small VCP/p97-interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_20108	chr11	75444762	75445125	+	37.02399	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	16009	NM_025098	80168	Hs.288568	NM_025098		MOGAT2	DGAT2L5|MGAT2	monoacylglycerol O-acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_68831	chr3	66007351	66007567	+	36.99075	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	17050	NM_015520	9223	Hs.476636	NM_004742	HPRD:04020	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58766	chr2	231191639	231191992	+	36.94630	NA	promoter-TSS (NM_138402)	promoter-TSS (NM_138402)	-79	NM_138402	93349	Hs.589661	NM_138402	HPRD:14299	SP140L	-	SP140 nuclear body protein-like	protein-coding
19-PTNLD28-TUMOR_peak_11409	chr1	244659579	244659808	+	36.92764	NA	intron (NM_001130957, intron 6 of 21)	intron (NM_001130957, intron 6 of 21)	35020	NM_001242340	257044	Hs.459534	NM_173807	HPRD:14561	C1orf101	-	chromosome 1 open reading frame 101	protein-coding
19-PTNLD28-TUMOR_peak_56682	chr2	162920480	162920746	+	36.78197	NA	intron (NM_001935, intron 2 of 25)	L2a|LINE|L2	10439	NM_001935	1803	Hs.368912	NM_001935	HPRD:02187	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl-peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_60554	chr20	31799700	31799886	+	36.76994	NA	Intergenic	Intergenic	-5323	NM_001042439	128861	Hs.360989	NM_178466	HPRD:12782	BPIFA3	C20orf71|SPLUNC3	BPI fold containing family A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_66822	chr3	14432675	14432855	+	36.45888	NA	Intergenic	Intergenic	-11311	NR_103507	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_42549	chr17	56072728	56073081	+	36.41026	NA	Intergenic	Intergenic	-7289	NM_007146	7716	Hs.463569	NM_007146		VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_25507	chr12	88221502	88221805	+	36.37213	NA	Intergenic	Intergenic	-43165	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71664	chr3	149756732	149756976	+	36.36031	NA	Intergenic	MER51A|LTR|ERV1	67788	NR_036538	646903	Hs.632559	NR_036538		LOC646903	-	uncharacterized LOC646903	ncRNA
19-PTNLD28-TUMOR_peak_86317	chr6	28411105	28411409	+	36.28928	NA	promoter-TSS (NM_001012455)	promoter-TSS (NM_001012455)	22	NM_001012455	222696	Hs.721841	NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
19-PTNLD28-TUMOR_peak_2037	chr1	31944453	31944729	+	36.12743	NA	Intergenic	LTR10A|LTR|ERV1	-27248	NR_034112	149086	Hs.729905	NR_034112	ENSG00000228682	LINC01225	-	long intergenic non-protein coding RNA 1225	pseudo
19-PTNLD28-TUMOR_peak_24352	chr12	52742991	52743388	+	36.07832	NA	Intergenic	Intergenic	15217	NM_001300810	3891	Hs.182507	NM_002283	HPRD:04139	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
19-PTNLD28-TUMOR_peak_37158	chr16	29790846	29791096	+	36.05206	NA	intron (NM_152338, intron 3 of 3)	intron (NM_152338, intron 3 of 3)	1410	NM_152338	653808	Hs.632195	NM_152338	ENSG00000174992	ZG16	JCLN|JCLN1|ZG16A	zymogen granule protein 16	protein-coding
19-PTNLD28-TUMOR_peak_58044	chr2	207820074	207820344	+	35.83547	NA	exon (NM_173077, exon 3 of 9)	exon (NM_173077, exon 3 of 9)	15931	NM_173077	130749	Hs.684103	NM_173077	HPRD:07098	CPO	-	carboxypeptidase O	protein-coding
19-PTNLD28-TUMOR_peak_87216	chr6	37544264	37544468	+	35.78404	NA	Intergenic	Intergenic	-21168	NR_039669	100616413		NR_039669	miRBase:MI0016810	MIR4462	-	microRNA 4462	ncRNA
19-PTNLD28-TUMOR_peak_82750	chr5	141061348	141061564	+	35.69181	NA	intron (NM_022481, intron 1 of 32)	intron (NM_022481, intron 1 of 32)	344	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_78568	chr5	252002	252166	+	35.64614	NA	intron (NM_004168, intron 13 of 14)	intron (NM_004168, intron 13 of 14)	19555	NR_104613	102467073	Hs.368328	NR_104613		LOC102467073	-	uncharacterized LOC102467073	ncRNA
19-PTNLD28-TUMOR_peak_94563	chr7	102477082	102477289	+	35.59113	NA	intron (NM_001287150, intron 16 of 18)	intron (NM_001287150, intron 16 of 18)	-76159	NM_005824	10234	Hs.567412	NM_005824	HPRD:10059	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
19-PTNLD28-TUMOR_peak_46271	chr18	72873767	72873951	+	35.56731	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	47422	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89412	chr6	128556799	128557044	+	35.52973	NA	intron (NM_001291983, intron 4 of 18)	MER44D|DNA|TcMar-Tigger	284898	NM_001291983	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_21827	chr11	123561237	123561452	+	35.52973	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-36029	NM_001040151	55800	Hs.4865	NM_018400	HPRD:10497	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium channel, voltage-gated, type III, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_65188	chr22	32475169	32475382	+	35.52973	NA	intron (NM_000343, intron 5 of 14)	intron (NM_000343, intron 5 of 14)	20118	NM_001256314	6523	Hs.1964	NM_000343	HPRD:01668	SLC5A1	D22S675|NAGT|SGLT1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_21030	chr11	108457484	108457726	+	35.52973	NA	intron (NM_015065, intron 1 of 5)	intron (NM_015065, intron 1 of 5)	6769	NM_015065	23086	Hs.28540	NM_015065	HPRD:08341	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
19-PTNLD28-TUMOR_peak_41043	chr17	32624872	32625026	+	35.47511	NA	Intergenic	L1PA2|LINE|L1	12262	NM_002986	6356	Hs.54460	NM_002986	HPRD:03098	CCL11	SCYA11	chemokine (C-C motif) ligand 11	protein-coding
19-PTNLD28-TUMOR_peak_70048	chr3	119383967	119384199	+	35.45840	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4679	NM_022135	64091	Hs.534383	NM_022135	HPRD:16160	POPDC2	POP2	popeye domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_80278	chr5	65065433	65065639	+	35.42662	NA	intron (NM_020726, intron 3 of 12)	MIRb|SINE|MIR	47513	NM_020726	57486	Hs.247460	NM_020726	HPRD:07495	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin (metallopeptidase M3 family)	protein-coding
19-PTNLD28-TUMOR_peak_88962	chr6	106975972	106976172	+	35.41553	NA	intron (NM_001624, intron 5 of 19)	intron (NM_001624, intron 5 of 19)	16342	NM_001624	202	Hs.724262	NM_001624	HPRD:18576	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
19-PTNLD28-TUMOR_peak_100492	chr8	123921770	123922027	+	35.35974	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	127997	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_92725	chr7	57282528	57282671	+	35.35974	NA	Intergenic	Intergenic	-34736	NR_030766	642006	Hs.562648	NR_030766		GUSBP10	-	glucuronidase, beta pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_52704	chr2	48698219	48698392	+	35.26852	NA	exon (NM_001193475, exon 10 of 20)	exon (NM_001193475, exon 10 of 20)	30397	NR_024188	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_72492	chr3	177175069	177175268	+	35.25700	NA	intron (NR_047568, intron 1 of 3)	LTR10A|LTR|ERV1	15459	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_32216	chr14	103838950	103839188	+	35.25590	NA	Intergenic	Intergenic	-12632	NM_001128919	4140	Hs.35828	NM_002376	HPRD:04058	MARK3	CTAK1|KP78|PAR1A|Par-1a	MAP/microtubule affinity-regulating kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_4489	chr1	79955994	79956325	+	35.25231	NA	Intergenic	HERVH-int|LTR|ERV1	-483664	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	EGF, latrophilin and seven transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_92501	chr7	49443428	49443823	+	35.21413	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-369632	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_82060	chr5	131150803	131151007	+	35.13192	NA	intron (NM_001278059, intron 11 of 11)	ERVL-B4-int|LTR|ERVL	-18149	NM_133372	96459	Hs.591273	NM_133372	HPRD:17233	FNIP1	-	folliculin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21807	chr11	123381997	123382176	+	35.12348	NA	Intergenic	Intergenic	-14258	NM_020716	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_106148	chr9	129857800	129858011	+	35.12348	NA	intron (NM_012098, intron 2 of 4)	Charlie13a|DNA|hAT-Charlie	27139	NM_012098	23452	Hs.653262	NM_012098	HPRD:05415	ANGPTL2	ARP2|HARP	angiopoietin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_94741	chr7	106370586	106370816	+	35.08567	NA	Intergenic	L2|LINE|L2	-69067	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_84519	chr5	179562152	179562412	+	35.08026	NA	intron (NM_175062, intron 4 of 13)	intron (NM_175062, intron 4 of 13)	-63164	NM_018434	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_31785	chr14	93552344	93552553	+	35.03524	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	18651	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21819	chr11	123461340	123461604	+	34.99525	NA	intron (NM_001286563, intron 4 of 20)	intron (NM_001286563, intron 4 of 20)	30502	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_65809	chr22	43548362	43548801	+	34.98608	NA	intron (NM_001256530, intron 1 of 3)	intron (NM_001256530, intron 1 of 3)	640	NM_001256530	706	Hs.202	NM_000714	HPRD:15913	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|mDRC|pk18	translocator protein (18kDa)	protein-coding
19-PTNLD28-TUMOR_peak_32753	chr15	29656648	29656921	+	34.96444	NA	intron (NM_015307, intron 2 of 10)	intron (NM_015307, intron 2 of 10)	-94764	NM_138704	56160	Hs.94011	NM_138704	HPRD:10503	NDNL2	HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3	necdin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_46106	chr18	60905221	60905590	+	34.90775	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	81208	NM_000633	596	Hs.150749	NM_000633	HPRD:01045	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
19-PTNLD28-TUMOR_peak_65281	chr22	35885322	35885554	+	34.86069	NA	Intergenic	Intergenic	-51914	NM_014310	23551	Hs.474711	NM_014310	HPRD:15210	RASD2	MGC:4834|Rhes|TEM2	RASD family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_78223	chr4	184104559	184104748	+	34.83753	NA	intron (NM_024949, intron 1 of 22)	L1M5|LINE|L1	84190	NM_024949	80014	Hs.333179	NM_024949	HPRD:12529	WWC2	BOMB	WW and C2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_36069	chr16	5142352	5142513	+	34.82666	NA	intron (NM_201400, intron 3 of 7)	intron (NM_201400, intron 3 of 7)	5389	NM_201400	196483	Hs.406461	NM_201400	HPRD:18018	FAM86A	-	family with sequence similarity 86, member A	protein-coding
19-PTNLD28-TUMOR_peak_10760	chr1	230010499	230010658	+	34.79754	NA	Intergenic	L2a|LINE|L2	-182958	NM_001291866	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_73434	chr3	194754252	194754495	+	34.72626	NA	Intergenic	Intergenic	-60944	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102611	chr9	31272983	31273211	+	34.72574	NA	Intergenic	LTR10F|LTR|ERV1	-864645	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_34902	chr15	83588011	83588575	+	34.70577	NA	intron (NM_199330, intron 1 of 8)	intron (NM_199330, intron 1 of 8)	33183	NM_004839	9455	Hs.578443	NM_004839	HPRD:07269	HOMER2	ACPD|CPD|HOMER-2|VESL-2	homer homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_16833	chr11	5617815	5618070	+	34.61712	NA	promoter-TSS (NM_001198645)	promoter-TSS (NM_001198645)	77	NM_001003818	117854	Hs.729048	NM_058166	HPRD:12123	TRIM6	RNF89	tripartite motif containing 6	protein-coding
19-PTNLD28-TUMOR_peak_45169	chr18	31911048	31911674	+	34.61712	NA	Intergenic	L1PA2|LINE|L1	-107846	NM_001198546	8715	Hs.514795	NM_003787	HPRD:04657	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
19-PTNLD28-TUMOR_peak_3424	chr1	50194143	50194401	+	34.60740	NA	intron (NM_032785, intron 2 of 13)	intron (NM_032785, intron 2 of 13)	-256515	NR_046839	100874313	Hs.551277	NR_046839		AGBL4-IT1	-	AGBL4 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_68142	chr3	49638320	49638551	+	34.60358	NA	intron (NM_003458, intron 1 of 11)	intron (NM_003458, intron 1 of 11)	46513	NM_003458	8927	Hs.194684	NM_003458	HPRD:04933	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
19-PTNLD28-TUMOR_peak_63954	chr21	45790263	45790544	+	34.58461	NA	intron (NR_038257, intron 5 of 31)	intron (NR_038257, intron 5 of 31)	16919	NM_003307	7226	Hs.369759	NM_003307	HPRD:04777	TRPM2	EREG1|KNP3|LTRPC2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel, subfamily M, member 2	protein-coding
19-PTNLD28-TUMOR_peak_85492	chr6	13474696	13474895	+	34.51281	NA	intron (NM_001242629, intron 1 of 1)	intron (NM_001242629, intron 1 of 1)	-2500	NR_038459	54438	Hs.484686	NM_018988	HPRD:13574	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64878	chr22	27020877	27021153	+	34.49046	NA	intron (NM_001886, intron 3 of 5)	LTR75|LTR|ERVL	3087	NM_001886	1413	Hs.57690	NM_001886	HPRD:00432	CRYBA4	CTRCT23|MCOPCT4	crystallin, beta A4	protein-coding
19-PTNLD28-TUMOR_peak_453	chr1	7599821	7600026	+	34.49046	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-231406	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_84956	chr6	4126256	4126476	+	34.36295	NA	intron (NR_104464, intron 4 of 5)	intron (NR_104464, intron 4 of 5)	9336	NM_001166010	10455	Hs.15250	NM_006117	HPRD:16269	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
19-PTNLD28-TUMOR_peak_1670	chr1	26611302	26611506	+	34.36071	NA	intron (NM_183008, intron 11 of 15)	intron (NM_183008, intron 11 of 15)	5191	NM_031286	83442	Hs.109051	NM_031286		SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate-rich protein like 3	protein-coding
19-PTNLD28-TUMOR_peak_67723	chr3	42518323	42518600	+	34.35462	NA	Intergenic	Intergenic	-12330	NM_001251882	7433	Hs.348500	NM_004624	HPRD:01890	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_11858	chr10	6116840	6117185	+	34.35462	NA	Intergenic	L2a|LINE|L2	-12679	NM_000417	3559	Hs.231367	NM_000417	HPRD:00986	IL2RA	CD25|IDDM10|IL2R|TCGFR|p55	interleukin 2 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_13263	chr10	44806329	44806760	+	34.35462	NA	Intergenic	CpG	18346	NM_001258000	100130539	Hs.694626	NM_001258000		LOC100130539	-	uncharacterized LOC100130539	protein-coding
19-PTNLD28-TUMOR_peak_76320	chr4	96188315	96188706	+	34.35165	NA	intron (NM_003728, intron 4 of 15)	intron (NM_003728, intron 4 of 15)	175868	NM_001256794	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_69675	chr3	109893864	109894076	+	34.35165	NA	Intergenic	ERVL-E-int|LTR|ERVL	765133	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_55196	chr2	118030666	118031131	+	34.28485	NA	Intergenic	L1MEc|LINE|L1	-541357	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_15322	chr10	103952923	103953299	+	34.26208	NA	Intergenic	LTR71A|LTR|ERV1	-32924	NM_152310	83401	Hs.302130	NM_152310	HPRD:16858	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
19-PTNLD28-TUMOR_peak_33959	chr15	64309355	64309530	+	34.22506	NA	intron (NM_014326, intron 2 of 11)	MIRc|SINE|MIR	29079	NM_014326	23604	Hs.237886	NM_014326	HPRD:09905	DAPK2	DRP-1|DRP1	death-associated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_61154	chr20	41113084	41113364	+	34.20544	NA	intron (NM_133170, intron 7 of 31)	MER119|DNA|hAT-Charlie	-200899	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_54277	chr2	96926213	96926464	+	34.18946	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	5413	NM_017849	55654	Hs.164303	NM_017849		TMEM127	-	transmembrane protein 127	protein-coding
19-PTNLD28-TUMOR_peak_104063	chr9	82391559	82391871	+	34.10390	NA	Intergenic	Intergenic	-47730	NR_121213	101927477	Hs.571630	NR_121212		LINC01507	-	long intergenic non-protein coding RNA 1507	ncRNA
19-PTNLD28-TUMOR_peak_67898	chr3	45922510	45922924	+	34.05381	NA	intron (NM_001276378, intron 2 of 11)	intron (NM_001276378, intron 2 of 11)	-5279	NM_006641	10803	Hs.225946	NM_006641	HPRD:09200	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	chemokine (C-C motif) receptor 9	protein-coding
19-PTNLD28-TUMOR_peak_76195	chr4	88871294	88871515	+	34.03256	NA	Intergenic	Intergenic	-25398	NM_001040060	6696	Hs.313	NM_000582	HPRD:01325	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_34966	chr15	85043816	85044102	+	34.02160	NA	Intergenic	CpG	-1847	NR_033787	440299	Hs.454641	NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	DNM1 pseudogene 41	pseudo
19-PTNLD28-TUMOR_peak_7471	chr1	158191090	158191261	+	34.01714	NA	Intergenic	L1PA4|LINE|L1	-32752	NM_001763	909	Hs.1309	NM_001763	HPRD:01776	CD1A	CD1|FCB6|HTA1|R4|T6	CD1a molecule	protein-coding
19-PTNLD28-TUMOR_peak_62301	chr20	56168653	56169152	+	34.01447	NA	Intergenic	L2a|LINE|L2	26730	NM_001160419	81030	Hs.302123	NM_030776	HPRD:09484	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_103320	chr9	45450269	45450474	+	34.01111	NA	Intergenic	AluJb|SINE|Alu	-445081	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_28046	chr13	44533556	44533703	+	33.98549	NA	Intergenic	Intergenic	-62842	NR_026955	121838	Hs.201441	NR_026955		LINC00284	NCRNA00284	long intergenic non-protein coding RNA 284	ncRNA
19-PTNLD28-TUMOR_peak_89482	chr6	132452941	132453202	+	33.98549	NA	Intergenic	Intergenic	-2047	NR_038981	100507254	Hs.103070	NR_038981		LINC01013	-	long intergenic non-protein coding RNA 1013	ncRNA
19-PTNLD28-TUMOR_peak_77936	chr4	166176685	166176946	+	33.98549	NA	intron (NM_007246, intron 4 of 14)	intron (NM_007246, intron 4 of 14)	24360	NR_026575	2713	Hs.654557	NR_026575	ENSG00000229894	GK3P	GKP3|GKTB	glycerol kinase 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_55375	chr2	121398926	121399391	+	33.94191	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-155709	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_99805	chr8	102472070	102472288	+	33.93267	NA	Intergenic	Intergenic	-32489	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_74439	chr4	9551303	9551483	+	33.89829	NA	Intergenic	Intergenic	6544	NR_031688	100302277		NR_031688	miRBase:MI0006422	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2	microRNA 548i-2	ncRNA
19-PTNLD28-TUMOR_peak_88646	chr6	87923206	87923503	+	33.83915	NA	intron (NM_015021, intron 1 of 7)	LTR10A|LTR|ERV1	58085	NM_015021	23036	Hs.485892	NM_015021	ENSG00000188994	ZNF292	Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
19-PTNLD28-TUMOR_peak_93567	chr7	77111381	77111610	+	33.75868	NA	Intergenic	Intergenic	-55278	NM_002835	5782	Hs.61812	NM_002835	HPRD:02513	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding
19-PTNLD28-TUMOR_peak_87989	chr6	52870531	52870851	+	33.75500	NA	intron (NM_014920, intron 13 of 13)	L2a|LINE|L2	-10513	NM_001512	2941	Hs.485557	NM_001512	HPRD:06899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_31440	chr14	77679774	77679985	+	33.75500	NA	intron (NM_020431, intron 2 of 23)	intron (NM_020431, intron 2 of 23)	31777	NM_020431	57156	Hs.22452	NM_020431	HPRD:16617	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
19-PTNLD28-TUMOR_peak_32140	chr14	102904461	102904686	+	33.75500	NA	intron (NM_001172631, intron 10 of 16)	C-rich|Low_complexity|Low_complexity	71555	NM_152326	122416	Hs.432945	NM_152326	HPRD:12467	ANKRD9	-	ankyrin repeat domain 9	protein-coding
19-PTNLD28-TUMOR_peak_27227	chr12	131886644	131887017	+	33.74141	NA	Intergenic	Intergenic	54815	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_12630	chr10	29067350	29067728	+	33.74141	NA	intron (NR_120652, intron 2 of 3)	intron (NR_120652, intron 2 of 3)	17440	NR_038376	100507605	Hs.119207	NR_038374	ENSG00000235824	LINC00837	-	long intergenic non-protein coding RNA 837	ncRNA
19-PTNLD28-TUMOR_peak_83060	chr5	148156448	148156643	+	33.74141	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-49611	NM_000024	154	Hs.2551	NM_000024	HPRD:00187	ADRB2	ADRB2R|ADRBR|B2AR|BAR|BETA2AR	adrenoceptor beta 2, surface	protein-coding
19-PTNLD28-TUMOR_peak_26090	chr12	107823126	107823377	+	33.73666	NA	intron (NM_001018072, intron 1 of 16)	intron (NM_001018072, intron 1 of 16)	111054	NM_001018072	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_25811	chr12	101389079	101389306	+	33.73203	NA	intron (NM_001286616, intron 7 of 26)	L2a|LINE|L2	93768	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_73213	chr3	190604666	190605037	+	33.73203	NA	Intergenic	Intergenic	9132	NR_024343	100170222	Hs.717310	NR_024343		SNAR-I	snaR-3	small ILF3/NF90-associated RNA I	snRNA
19-PTNLD28-TUMOR_peak_106425	chr9	132945604	132945823	+	33.69124	NA	intron (NM_014286, intron 1 of 7)	intron (NM_014286, intron 1 of 7)	10856	NM_014286	23413	Hs.642946	NM_014286	HPRD:04500	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
19-PTNLD28-TUMOR_peak_36235	chr16	10603552	10603684	+	33.64676	NA	Intergenic	Intergenic	70921	NM_001424	2013	Hs.531561	NM_001424	HPRD:11893	EMP2	NPHS10|XMP	epithelial membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_2311	chr1	35236539	35236935	+	33.60833	NA	Intergenic	L2|LINE|L2	-10053	NM_024009	2707	Hs.522561	NM_024009	HPRD:04505	GJB3	CX31|DFNA2|DFNA2B|EKV	gap junction protein, beta 3, 31kDa	protein-coding
19-PTNLD28-TUMOR_peak_72257	chr3	170028060	170028230	+	33.59120	NA	Intergenic	Intergenic	-47328	NM_001145098	6498	Hs.536655	NM_005414	HPRD:01319	SKIL	SNO|SnoA|SnoI|SnoN	SKI-like proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_26062	chr12	107297446	107297656	+	33.49813	NA	Intergenic	Intergenic	-51993	NM_152261	90488	Hs.257664	NM_152261	HPRD:14462	TMEM263	C12orf23	transmembrane protein 263	protein-coding
19-PTNLD28-TUMOR_peak_20103	chr11	75417310	75417615	+	33.49813	NA	Intergenic	Intergenic	-11472	NM_025098	80168	Hs.288568	NM_025098		MOGAT2	DGAT2L5|MGAT2	monoacylglycerol O-acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_11499	chr1	246862446	246862709	+	33.48134	NA	Intergenic	Intergenic	-24801	NM_016002	51097	Hs.498397	NM_016002	HPRD:13038	SCCPDH	NET11	saccharopine dehydrogenase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_67369	chr3	31071100	31071592	+	33.45250	NA	Intergenic	Intergenic	-135193	NM_207359	339896	Hs.657052	NM_207359	HPRD:13557	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_46557	chr19	1161725	1161893	+	33.44450	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	12473	NM_014963	22904	Hs.408708	NM_014963	HPRD:17203	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_25095	chr12	67436456	67436798	+	33.38898	NA	Intergenic	Intergenic	53437	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_106593	chr9	136314987	136315227	+	33.37180	NA	intron (NM_139027, intron 23 of 28)	intron (NM_139027, intron 23 of 28)	-9980	NM_017586	11094	Hs.62003	NM_017586	HPRD:12974	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_29823	chr14	34400721	34401026	+	33.37180	NA	intron (NM_022073, intron 1 of 4)	intron (NM_022073, intron 1 of 4)	19411	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_103311	chr9	45168547	45168984	+	33.34817	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-163475	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_85718	chr6	17831404	17831700	+	33.33483	NA	intron (NM_001105568, intron 12 of 37)	intron (NM_001105568, intron 12 of 37)	-124487	NM_001278210	9972	Hs.601591	NM_005124	HPRD:04899	NUP153	HNUP153|N153	nucleoporin 153kDa	protein-coding
19-PTNLD28-TUMOR_peak_19862	chr11	72063984	72064180	+	33.31866	NA	intron (NM_030813, intron 6 of 16)	intron (NM_030813, intron 6 of 16)	81642	NM_001258393	81570	Hs.523877	NM_030813	HPRD:11560	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_15571	chr10	111747258	111747433	+	33.31477	NA	intron (NR_038943, intron 2 of 4)	intron (NR_038943, intron 2 of 4)	-18381	NM_019903	120	Hs.501012	NM_001121	HPRD:03339	ADD3	ADDL	adducin 3 (gamma)	protein-coding
19-PTNLD28-TUMOR_peak_98449	chr8	42067405	42067599	+	33.27765	NA	Intergenic	Intergenic	-2308	NM_000930	5327	Hs.491582	NM_000930	HPRD:01419	PLAT	T-PA|TPA	plasminogen activator, tissue	protein-coding
19-PTNLD28-TUMOR_peak_60629	chr20	32778475	32778825	+	33.27371	NA	Intergenic	Intergenic	-69521	NM_001672	434	Hs.659995	NM_001672	HPRD:02562	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
19-PTNLD28-TUMOR_peak_85399	chr6	12045075	12045444	+	33.26794	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	32535	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_66541	chr3	10473922	10474214	+	33.26794	NA	intron (NM_001001331, intron 2 of 22)	intron (NM_001001331, intron 2 of 22)	-37822	NR_030614	100126334		NR_030614		MIR885	MIRN885|hsa-mir-885	microRNA 885	ncRNA
19-PTNLD28-TUMOR_peak_34018	chr15	65579079	65579560	+	33.26746	NA	promoter-TSS (NM_017851)	promoter-TSS (NM_017851)	-301	NM_017851	54956	Hs.30634	NM_017851	HPRD:07919	PARP16	ARTD15|C15orf30|pART15	poly (ADP-ribose) polymerase family, member 16	protein-coding
19-PTNLD28-TUMOR_peak_85007	chr6	4782345	4782706	+	33.23586	NA	intron (NM_004824, intron 1 of 6)	intron (NM_004824, intron 1 of 6)	5845	NM_004824	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_70751	chr3	129627337	129627620	+	33.16212	NA	non-coding (NR_037893, exon 3 of 3)	non-coding (NR_037893, exon 3 of 3)	14764	NR_037893	100507032	Hs.529562	NR_037893	ENSG00000271270	TMCC1-AS1	-	TMCC1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_63479	chr21	39043295	39043565	+	33.16212	NA	intron (NM_002240, intron 3 of 3)	MER21B|LTR|ERVL	245311	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_82434	chr5	137484569	137484784	+	33.15928	NA	intron (NM_139199, intron 23 of 26)	AluJr|SINE|Alu	-9544	NM_003551	8382	Hs.730856	NM_003551	HPRD:04655	NME5	NM23-H5|NM23H5|RSPH23	NME/NM23 family member 5	protein-coding
19-PTNLD28-TUMOR_peak_18771	chr11	59524393	59524593	+	33.12287	NA	intron (NM_001178040, intron 1 of 9)	intron (NM_001178040, intron 1 of 9)	1961	NM_004177	6809	Hs.180711	NM_004177	HPRD:15985	STX3	STX3A	syntaxin 3	protein-coding
19-PTNLD28-TUMOR_peak_71550	chr3	147648369	147648539	+	33.12254	NA	Intergenic	Intergenic	509340	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_7940	chr1	166481109	166481351	+	33.12254	NA	Intergenic	MamRep1527|LTR|LTR	-91923	NR_002925	116123	Hs.348539	NM_138784	HPRD:14011	FMO9P	-	flavin containing monooxygenase 9 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_14324	chr10	75361308	75361574	+	33.12254	NA	Intergenic	Intergenic	-26008	NM_152586	159195	Hs.657355	NM_152586	HPRD:15641	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
19-PTNLD28-TUMOR_peak_72865	chr3	185406640	185406889	+	33.12254	NA	intron (NM_001007225, intron 6 of 14)	intron (NM_001007225, intron 6 of 14)	-24276	NR_027317	646600	Hs.647949	NR_027317	ENSG00000163915	C3orf65	-	chromosome 3 open reading frame 65	ncRNA
19-PTNLD28-TUMOR_peak_106774	chr9	139686119	139686418	+	33.10860	NA	intron (NM_032928, intron 2 of 4)	intron (NM_032928, intron 2 of 4)	491	NM_032928	85014	Hs.356744	NM_032928	HPRD:17490	TMEM141	-	transmembrane protein 141	protein-coding
19-PTNLD28-TUMOR_peak_82801	chr5	141602126	141602387	+	33.10509	NA	Intergenic	Intergenic	101726	NM_001293289	81848	Hs.323308	NM_030964	HPRD:10466	SPRY4	HH17	sprouty homolog 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_81343	chr5	99734619	99735007	+	33.09176	NA	Intergenic	Intergenic	-10855	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_54992	chr2	112806901	112807095	+	33.02759	NA	Intergenic	LTR13|LTR|ERVK	-5802	NM_032824	84910	Hs.656298	NM_032824	HPRD:07867	TMEM87B	-	transmembrane protein 87B	protein-coding
19-PTNLD28-TUMOR_peak_104546	chr9	93944800	93944998	+	32.99986	NA	Intergenic	Intergenic	-107485	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
19-PTNLD28-TUMOR_peak_1969	chr1	30885203	30885522	+	32.94357	NA	Intergenic	Intergenic	-306257	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48013	chr19	18223875	18224079	+	32.93766	NA	intron (NM_015016, intron 2 of 26)	intron (NM_015016, intron 2 of 26)	-14351	NM_001290024	3594	Hs.567294	NM_005535	HPRD:03363	IL12RB1	CD212|IL-12R-BETA1|IL12RB	interleukin 12 receptor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_65882	chr22	45080632	45080922	+	32.91113	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	8089	NM_001017530	55615	Hs.102336	NM_015366	HPRD:18696	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5 (renal)	protein-coding
19-PTNLD28-TUMOR_peak_102821	chr9	34961926	34962104	+	32.87803	NA	intron (NM_015297, intron 1 of 7)	intron (NM_015297, intron 1 of 7)	3823	NM_015297	23349	Hs.7989	NM_015297	ENSG00000122733	KIAA1045	-	KIAA1045	protein-coding
19-PTNLD28-TUMOR_peak_69994	chr3	117341212	117341673	+	32.87803	NA	Intergenic	Intergenic	701164	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_91219	chr7	6977972	6978189	+	32.85920	NA	Intergenic	Intergenic	-112154	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_52069	chr2	34013208	34013414	+	32.84770	NA	Intergenic	ERVL-E-int|LTR|ERVL	-60027	NR_003143	151325	Hs.528847	NM_207329	HPRD:14793	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_53461	chr2	73089776	73089963	+	32.82183	NA	Intergenic	CpG	-24643	NM_003124	6697	Hs.301540	NM_003124	HPRD:01632	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
19-PTNLD28-TUMOR_peak_76325	chr4	96560294	96560574	+	32.74691	NA	Intergenic	Intergenic	-90073	NM_003728	8633	Hs.388565	NM_003728	HPRD:04678	UNC5C	UNC5H3	unc-5 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_94188	chr7	98791444	98791719	+	32.73283	NA	intron (NM_001145715, intron 4 of 9)	AluJo|SINE|Alu	13508	NM_001145715	402569	Hs.253050	NM_001145715	ENSG00000185467	KPNA7	-	karyopherin alpha 7 (importin alpha 8)	protein-coding
19-PTNLD28-TUMOR_peak_103310	chr9	45127598	45128005	+	32.71291	NA	Intergenic	L1MC4|LINE|L1	-122511	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_17029	chr11	9160635	9160858	+	32.71073	NA	3' UTR (NM_001243254, exon 23 of 23)	3' UTR (NM_001243254, exon 23 of 23)	44836	NR_027713	283102	Hs.689472	NR_027713	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
19-PTNLD28-TUMOR_peak_55632	chr2	129846850	129847072	+	32.71073	NA	Intergenic	Intergenic	184503	NR_122041	151121	Hs.531687	NM_001033657	ENSG00000204460	LOC151121	-	uncharacterized LOC151121	ncRNA
19-PTNLD28-TUMOR_peak_78629	chr5	997128	997514	+	32.70985	NA	intron (NR_104614, intron 1 of 1)	MER72|LTR|ERV1	134	NR_104614	100506688	Hs.532063	NM_001242737		LOC100506688	-	uncharacterized LOC100506688	ncRNA
19-PTNLD28-TUMOR_peak_47811	chr19	16466134	16466655	+	32.65705	NA	non-coding (NR_047665, exon 23 of 23)	non-coding (NR_047665, exon 23 of 23)	30743	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_84944	chr6	3926428	3926602	+	32.64821	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	76883	NM_012135	26240	Hs.140944	NM_012135	HPRD:16883	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
19-PTNLD28-TUMOR_peak_8433	chr1	178027073	178027269	+	32.64790	NA	Intergenic	Intergenic	-20029	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_35552	chr15	102182178	102182377	+	32.60116	NA	3' UTR (NM_078474, exon 6 of 6)	3' UTR (NM_078474, exon 6 of 6)	10317	NM_078474	80213	Hs.288912	NM_025141	HPRD:16554	TM2D3	BLP2	TM2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_44560	chr18	10577905	10578252	+	32.55714	NA	Intergenic	L1PA2|LINE|L1	52205	NM_003826	8774	Hs.464622	NM_003826	HPRD:04448	NAPG	GAMMASNAP	N-ethylmaleimide-sensitive factor attachment protein, gamma	protein-coding
19-PTNLD28-TUMOR_peak_2863	chr1	42039819	42040052	+	32.52887	NA	intron (NM_001127714, intron 4 of 7)	intron (NM_001127714, intron 4 of 7)	-89591	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_33755	chr15	58976516	58976867	+	32.51966	NA	intron (NM_001110, intron 2 of 15)	MER21C|LTR|ERVL	9115	NR_073415	664618	Hs.670224	NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_51456	chr2	20591866	20592057	+	32.51966	NA	Intergenic	Intergenic	-41350	NM_015317	23369	Hs.467824	NM_015317	HPRD:09527	PUM2	PUMH2|PUML2	pumilio RNA-binding family member 2	protein-coding
19-PTNLD28-TUMOR_peak_22239	chr11	131278039	131278321	+	32.49230	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	37809	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_103494	chr9	67663406	67663813	+	32.48230	NA	Intergenic	L1MC4|LINE|L1	-115514	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_75103	chr4	42675144	42675376	+	32.45250	NA	Intergenic	Intergenic	-16138	NM_006095	10396	Hs.435052	NM_006095	HPRD:16527	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_56140	chr2	145161705	145161894	+	32.45250	NA	intron (NM_014795, intron 5 of 9)	intron (NM_014795, intron 5 of 9)	-71698	NM_001284234	79712	Hs.44780	NM_024659	HPRD:13615	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80438	chr5	68567348	68567535	+	32.45250	NA	intron (NM_001799, intron 9 of 11)	AluJb|SINE|Alu	36819	NM_001799	1022	Hs.184298	NM_001799	HPRD:15993	CDK7	CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin-dependent kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_46369	chr18	76916800	76916982	+	32.45250	NA	intron (NM_198531, intron 7 of 29)	intron (NM_198531, intron 7 of 29)	87494	NM_198531	374868	Hs.465475	NM_198531	HPRD:16528	ATP9B	ATPASEP|ATPIIB|NEO1L|hMMR1	ATPase, class II, type 9B	protein-coding
19-PTNLD28-TUMOR_peak_92614	chr7	54907337	54907552	+	32.45250	NA	Intergenic	Intergenic	80438	NR_110040	100996654	Hs.127991	NR_110040		LOC100996654	-	uncharacterized LOC100996654	ncRNA
19-PTNLD28-TUMOR_peak_25064	chr12	66377473	66377674	+	32.45250	NA	Intergenic	Intergenic	39933	NR_106722	102464827		NR_106722		MIR6074	hsa-mir-6074	microRNA 6074	ncRNA
19-PTNLD28-TUMOR_peak_90468	chr6	166459811	166460023	+	32.45250	NA	Intergenic	Intergenic	-58390	NR_026860	90632	Hs.31917	NR_026860	ENSG00000223414	LINC00473	C6orf176|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA
19-PTNLD28-TUMOR_peak_99156	chr8	71296962	71297171	+	32.45250	NA	intron (NM_006540, intron 1 of 22)	intron (NM_006540, intron 1 of 22)	18954	NM_006540	10499	Hs.446678	NM_006540	HPRD:09066	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
19-PTNLD28-TUMOR_peak_89702	chr6	140053683	140053897	+	32.45250	NA	Intergenic	Intergenic	-38420	NR_038399	100132735	Hs.62646	NR_038399		LOC100132735	-	uncharacterized LOC100132735	ncRNA
19-PTNLD28-TUMOR_peak_61006	chr20	37740835	37741048	+	32.45025	NA	Intergenic	Intergenic	112450	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_78734	chr5	4615548	4615796	+	32.44779	NA	Intergenic	L1PA2|LINE|L1	-157922	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_62596	chr20	62212244	62212473	+	32.44407	NA	Intergenic	MER21B|LTR|ERVL	-6766	NM_001037335	85441	Hs.517180	NM_033405	HPRD:11459	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2, transcriptional coactivator	protein-coding
19-PTNLD28-TUMOR_peak_46155	chr18	64382364	64382918	+	32.44407	NA	Intergenic	L1PA3|LINE|L1	-111266	NM_001271028	28513	Hs.42771	NM_021153	HPRD:04311	CDH19	CDH7|CDH7L2	cadherin 19, type 2	protein-coding
19-PTNLD28-TUMOR_peak_71544	chr3	147290791	147291008	+	32.44407	NA	Intergenic	L2c|LINE|L2	151785	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_98723	chr8	52620754	52620971	+	32.40288	NA	intron (NM_144651, intron 1 of 22)	intron (NM_144651, intron 1 of 22)	101143	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_68024	chr3	48193016	48193281	+	32.37798	NA	Intergenic	Intergenic	36653	NM_001789	993	Hs.437705	NM_001789	HPRD:00305	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
19-PTNLD28-TUMOR_peak_90770	chr7	907121	907604	+	32.34519	NA	intron (NM_025154, intron 15 of 17)	LTR41|LTR|ERVL	-8829	NM_015949	51608	Hs.107387	NM_015949	HPRD:12909	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_14798	chr10	90013943	90014133	+	32.34517	NA	Intergenic	Intergenic	329044	NM_018363	55328	Hs.149849	NM_018363	HPRD:07742	RNLS	C10orf59|RENALASE	renalase, FAD-dependent amine oxidase	protein-coding
19-PTNLD28-TUMOR_peak_99830	chr8	102904135	102904319	+	32.34433	NA	intron (NM_001040624, intron 4 of 7)	L1PA2|LINE|L1	-100788	NM_032041	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_8771	chr1	183592472	183592619	+	32.29749	NA	Intergenic	Intergenic	12531	NM_001270439	10092	Hs.518609	NM_005717	HPRD:11969	ARPC5	ARC16|dJ127C7.3|p16-Arc	actin related protein 2/3 complex, subunit 5, 16kDa	protein-coding
19-PTNLD28-TUMOR_peak_88303	chr6	73703847	73703983	+	32.28651	NA	intron (NM_001160133, intron 1 of 14)	L1HS|LINE|L1	-26439	NR_036244	100423005		NR_036244	miRBase:MI0015890	MIR4282	-	microRNA 4282	ncRNA
19-PTNLD28-TUMOR_peak_88583	chr6	85336500	85336676	+	32.24592	NA	Intergenic	L1PA2|LINE|L1	137366	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_100121	chr8	111906559	111906941	+	32.24592	NA	Intergenic	LTR18B|LTR|ERVL	132912	NR_125417	101927459	Hs.575543	NR_125416		LOC101927459	-	uncharacterized LOC101927459	ncRNA
19-PTNLD28-TUMOR_peak_17699	chr11	26671457	26671622	+	32.20765	NA	intron (NM_031418, intron 24 of 26)	intron (NM_031418, intron 24 of 26)	72035	NM_178498	159963	Hs.148907	NM_178498	HPRD:15395	SLC5A12	SMCT2	solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_51203	chr2	12667315	12667454	+	32.20765	NA	intron (NR_110196, intron 4 of 5)	L1PA2|LINE|L1	-189614	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_30965	chr14	69151809	69152068	+	32.20673	NA	Intergenic	Intergenic	108693	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31133	chr14	71198635	71198856	+	32.14754	NA	intron (NM_001284231, intron 11 of 11)	intron (NM_001284231, intron 11 of 11)	33330	NR_125769	103695436	Hs.572296	NR_125769		LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
19-PTNLD28-TUMOR_peak_31129	chr14	71168947	71169219	+	32.14476	NA	intron (NR_125769, intron 2 of 3)	MER20|DNA|hAT-Charlie	3668	NR_125769	103695436	Hs.572296	NR_125769		LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
19-PTNLD28-TUMOR_peak_20904	chr11	103609771	103610258	+	32.12766	NA	Intergenic	L1PA3|LINE|L1	-110620	NR_039842	100616457		NR_039842	miRBase:MI0017326	MIR4693	-	microRNA 4693	ncRNA
19-PTNLD28-TUMOR_peak_8508	chr1	179098897	179099067	+	32.12766	NA	intron (NM_001136001, intron 2 of 9)	intron (NM_001136001, intron 2 of 9)	13242	NM_005158	27	Hs.159472	NM_005158	HPRD:01259	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_63859	chr21	44883529	44883738	+	32.10565	NA	intron (NR_026863, intron 3 of 3)	intron (NR_026863, intron 3 of 3)	13729	NR_026960	284836	Hs.146127	NM_194309	HPRD:10738	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
19-PTNLD28-TUMOR_peak_53330	chr2	70224536	70224714	+	32.10358	NA	intron (NR_033872, intron 7 of 10)	intron (NR_033872, intron 7 of 10)	-35228	NM_152792	151516	Hs.516253	NM_152792	HPRD:08683	ASPRV1	MUNO|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding
19-PTNLD28-TUMOR_peak_46173	chr18	65267451	65267648	+	32.07129	NA	intron (NR_033921, intron 1 of 4)	intron (NR_033921, intron 1 of 4)	-83582	NM_032160	92126	Hs.124673	NM_032160	HPRD:10720	DSEL	C18orf4	dermatan sulfate epimerase-like	protein-coding
19-PTNLD28-TUMOR_peak_30972	chr14	69190723	69191079	+	32.06680	NA	Intergenic	Intergenic	69730	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_33786	chr15	59774977	59775235	+	32.05785	NA	intron (NM_152450, intron 3 of 8)	intron (NM_152450, intron 3 of 8)	44734	NM_152450	145773	Hs.531168	NM_152450	HPRD:14508	FAM81A	-	family with sequence similarity 81, member A	protein-coding
19-PTNLD28-TUMOR_peak_42619	chr17	57078796	57079076	+	32.01722	NA	intron (NM_001005207, intron 23 of 24)	intron (NM_001005207, intron 23 of 24)	105330	NM_015294	4591	Hs.579079	NM_015294	HPRD:05463	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
19-PTNLD28-TUMOR_peak_9573	chr1	204885187	204885517	+	32.01722	NA	intron (NM_001005388, intron 1 of 29)	intron (NM_001005388, intron 1 of 29)	-28002	NM_001160331	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_86042	chr6	25311536	25311705	+	32.01337	NA	intron (NM_017640, intron 2 of 36)	HAL1|LINE|L1	31964	NM_001173977	55604	Hs.649550	NM_017640	HPRD:11285	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
19-PTNLD28-TUMOR_peak_64886	chr22	27152788	27153074	+	31.96248	NA	intron (NR_110543, intron 2 of 5)	CpG	84125	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90324	chr6	159359885	159360213	+	31.95396	NA	Intergenic	Intergenic	50430	NM_001195032	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding
19-PTNLD28-TUMOR_peak_2147	chr1	32986155	32986502	+	31.94518	NA	Intergenic	AluY|SINE|Alu	-18418	NR_111980	653121	Hs.546479	NM_144621	HPRD:10315	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
19-PTNLD28-TUMOR_peak_21115	chr11	111397400	111397628	+	31.94518	NA	intron (NM_207430, intron 4 of 6)	intron (NM_207430, intron 4 of 6)	12004	NM_001100388	399949	Hs.411600	NM_207430	HPRD:13529	C11orf88	-	chromosome 11 open reading frame 88	protein-coding
19-PTNLD28-TUMOR_peak_28238	chr13	50181247	50181417	+	31.93720	NA	Intergenic	Intergenic	-21103	NM_138450	115761	Hs.558599	NM_138450	HPRD:12484	ARL11	ARLTS1	ADP-ribosylation factor-like 11	protein-coding
19-PTNLD28-TUMOR_peak_8064	chr1	168539100	168539245	+	31.89449	NA	Intergenic	AluY|SINE|Alu	-6539	NM_002995	6375	Hs.546295	NM_002995	HPRD:02595	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	chemokine (C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_50045	chr19	51550194	51550557	+	31.85910	NA	Intergenic	Intergenic	-12227	NM_145895	43849	Hs.411572	NM_019598	HPRD:05705	KLK12	KLK-L5|KLKL5	kallikrein-related peptidase 12	protein-coding
19-PTNLD28-TUMOR_peak_46453	chr18	78015748	78015950	+	31.85813	NA	Intergenic	LTR13|LTR|ERVK	-10452	NM_032510	84552	Hs.654920	NM_032510	HPRD:10138	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
19-PTNLD28-TUMOR_peak_72485	chr3	177111997	177112480	+	31.85813	NA	Intergenic	L1PA2|LINE|L1	-47471	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_15412	chr10	105238935	105239196	+	31.83301	NA	promoter-TSS (NM_001129742)	promoter-TSS (NM_001129742)	-68	NM_001129742	119395	Hs.364624	NM_182494	HPRD:13300	CALHM3	FAM26A|bA225H22.7	calcium homeostasis modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_9141	chr1	200609225	200609402	+	31.77326	NA	Intergenic	L2|LINE|L2	-19451	NM_014875	9928	Hs.3104	NM_014875	HPRD:06605	KIF14	-	kinesin family member 14	protein-coding
19-PTNLD28-TUMOR_peak_5823	chr1	117080078	117080459	+	31.76242	NA	intron (NM_001144822, intron 2 of 4)	intron (NM_001144822, intron 2 of 4)	33447	NR_026665	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_61625	chr20	47388132	47388391	+	31.75958	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	56159	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_101468	chr8	142305042	142305302	+	31.75272	NA	Intergenic	Intergenic	-40444	NM_001286646	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45, member 4	protein-coding
19-PTNLD28-TUMOR_peak_82255	chr5	133922984	133923183	+	31.75103	NA	Intergenic	Intergenic	45450	NM_001033503	51128	Hs.432984	NM_016103	HPRD:09647	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated, Ras related GTPase 1B	protein-coding
19-PTNLD28-TUMOR_peak_43806	chr17	77022621	77023075	+	31.72399	NA	intron (NR_049769, intron 1 of 3)	intron (NR_049769, intron 1 of 3)	889	NR_040018	100507410	Hs.666723	NR_040018	ENSG00000265096	C1QTNF1-AS1	-	C1QTNF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92703	chr7	56263965	56264312	+	31.66769	NA	Intergenic	MER11A|LTR|ERVK	-80048	NM_001145712	389493	Hs.177948	NM_001145712	ENSG00000185290	NUPR1L	-	nuclear protein, transcriptional regulator, 1-like	protein-coding
19-PTNLD28-TUMOR_peak_20321	chr11	79685312	79685570	+	31.65798	NA	Intergenic	LTR33A_|LTR|ERVL	-533746	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_57519	chr2	192352881	192353265	+	31.62822	NA	Intergenic	Intergenic	-189725	NM_001254736	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_90264	chr6	158447109	158447361	+	31.58433	NA	intron (NM_003898, intron 2 of 26)	intron (NM_003898, intron 2 of 26)	9155	NM_001178088	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_48660	chr19	35666565	35667062	+	31.57075	NA	Intergenic	MSTB|LTR|ERVL-MaLR	20968	NM_001164605	53827	Hs.333418	NM_014164	HPRD:09448	FXYD5	DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
19-PTNLD28-TUMOR_peak_47530	chr19	13648435	13648634	+	31.57075	NA	Intergenic	LTR9|LTR|ERV1	-31260	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_46257	chr18	72219261	72219433	+	31.54152	NA	intron (NM_032649, intron 1 of 11)	intron (NM_032649, intron 1 of 11)	17655	NM_032649	84735	Hs.400613	NM_032649	HPRD:09883	CNDP1	CN1|CPGL2|HsT2308	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding
19-PTNLD28-TUMOR_peak_99965	chr8	105848145	105848325	+	31.54152	NA	Intergenic	L2a|LINE|L2	-246983	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_53232	chr2	68051261	68051721	+	31.52168	NA	intron (NR_110271, intron 1 of 2)	intron (NR_110271, intron 1 of 2)	1203	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_106896	chr9	141007937	141008508	+	31.50591	NA	intron (NM_000718, intron 39 of 45)	intron (NM_000718, intron 39 of 45)	-36343	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	tubulin, beta pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_97566	chr8	22094917	22095107	+	31.48372	NA	Intergenic	L2a|LINE|L2	-5161	NM_014759	9796	Hs.334688	NM_014759	HPRD:16345	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_83925	chr5	171426913	171427174	+	31.46568	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	6834	NM_012300	23291	Hs.484138	NM_012300	HPRD:07294	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_71540	chr3	147116956	147117175	+	31.45298	NA	intron (NM_001168379, intron 2 of 4)	intron (NM_001168379, intron 2 of 4)	5006	NM_001168378	84107	Hs.415766	NM_032153	HPRD:12340	ZIC4	-	Zic family member 4	protein-coding
19-PTNLD28-TUMOR_peak_39928	chr17	6757196	6757756	+	31.41618	NA	intron (NR_002710, intron 1 of 13)	L1PBa1|LINE|L1	581	NR_002710	245	Hs.378695	NR_002710		ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_51575	chr2	24679550	24679791	+	31.41270	NA	Intergenic	Intergenic	-96273	NM_006277	50618	Hs.432562	NM_006277	HPRD:09193	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
19-PTNLD28-TUMOR_peak_76777	chr4	119889221	119889482	+	31.31186	NA	intron (NM_001128934, intron 1 of 4)	intron (NM_001128934, intron 1 of 4)	79355	NM_001128933	171024	Hs.655519	NM_133477	HPRD:15456	SYNPO2	-	synaptopodin 2	protein-coding
19-PTNLD28-TUMOR_peak_20560	chr11	91760453	91760622	+	31.31186	NA	Intergenic	L1PA2|LINE|L1	-324725	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_42722	chr17	58964213	58964416	+	31.29961	NA	intron (NM_017679, intron 9 of 23)	L1PA2|LINE|L1	209142	NM_001099432	54828	Hs.655028	NM_017679	HPRD:06313	BCAS3	GAOB1|MAAB	breast carcinoma amplified sequence 3	protein-coding
19-PTNLD28-TUMOR_peak_42328	chr17	49721153	49721385	+	31.28768	NA	intron (NM_001082533, intron 7 of 9)	MIRb|SINE|MIR	307193	NR_122104	440446	Hs.626751	NR_122104	HPRD:13466	LOC440446	-	uncharacterized LOC440446	ncRNA
19-PTNLD28-TUMOR_peak_30272	chr14	52083793	52084190	+	31.28537	NA	intron (NM_001042481, intron 2 of 14)	intron (NM_001042481, intron 2 of 14)	-17321	NR_047477	100874185	Hs.578226	NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_91200	chr7	6832143	6832372	+	31.28019	NA	intron (NM_001099697, intron 19 of 20).2	intron (NM_001099697, intron 19 of 20).2	33669	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_26747	chr12	121890125	121890498	+	31.27659	NA	intron (NM_001005366, intron 13 of 22)	CpG	-8156	NR_106957	102465665		NR_106957		MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
19-PTNLD28-TUMOR_peak_32936	chr15	32933798	32934264	+	31.20553	NA	intron (NM_001144757, intron 1 of 5)	intron (NM_001144757, intron 1 of 5)	161	NM_003020	6447	Hs.156540	NM_003020	HPRD:01410	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V (7B2 protein)	protein-coding
19-PTNLD28-TUMOR_peak_22057	chr11	128579286	128579734	+	31.20553	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-13592	NR_038908	100507392	Hs.657715	NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_21664	chr11	120705621	120705832	+	31.18370	NA	intron (NM_001282470, intron 6 of 19)	intron (NM_001282470, intron 6 of 19)	-189077	NM_001130047	219899	Hs.504136	NM_152715		TBCEL	El|LRRC35	tubulin folding cofactor E-like	protein-coding
19-PTNLD28-TUMOR_peak_8276	chr1	173523814	173523988	+	31.18370	NA	exon (NM_178527, exon 11 of 28)	exon (NM_178527, exon 11 of 28)	48332	NM_178527	284525	Hs.494981	NM_178527	HPRD:15398	SLC9C2	SLC9A11	solute carrier family 9, member C2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_81490	chr5	109299860	109300135	+	31.18370	NA	Intergenic	Intergenic	81114	NR_033175	100289673	Hs.368405	NR_033175		LOC100289673	-	phosphoglycerate mutase family member 5 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22182	chr11	130392223	130392387	+	31.18370	NA	Intergenic	Intergenic	73436	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_59059	chr2	237881415	237881650	+	31.18119	NA	Intergenic	Intergenic	-112552	NM_198189	10920	Hs.531713	NM_006710		COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_36261	chr16	10965020	10965201	+	31.17950	NA	Intergenic	Intergenic	-5945	NM_000246	4261	Hs.701991	NM_000246	HPRD:02475	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II, major histocompatibility complex, transactivator	protein-coding
19-PTNLD28-TUMOR_peak_17089	chr11	10427821	10427991	+	31.15921	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-43962	NM_001172431	272	Hs.501890	NM_000480	HPRD:00041	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_9823	chr1	207881404	207881669	+	31.15700	NA	exon (NM_175710, exon 10 of 12)	exon (NM_175710, exon 10 of 12)	-43847	NM_002389	4179	Hs.510402	NM_002389	HPRD:00406	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
19-PTNLD28-TUMOR_peak_17340	chr11	13905737	13906014	+	31.15700	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-78309	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_10874	chr1	232428575	232428970	+	31.11484	NA	Intergenic	Intergenic	222471	NM_020808	57568	Hs.745009	NM_020808	HPRD:15346	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
19-PTNLD28-TUMOR_peak_6975	chr1	153526354	153526660	+	31.09927	NA	Intergenic	Intergenic	-4773	NM_002960	6274	Hs.557609	NM_002960	HPRD:01507	S100A3	S100E	S100 calcium binding protein A3	protein-coding
19-PTNLD28-TUMOR_peak_568	chr1	9135130	9135480	+	31.07569	NA	Intergenic	MER83|LTR|ERV1	-5418	NM_003039	6518	Hs.530003	NM_003039	HPRD:00690	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 (facilitated glucose/fructose transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_72150	chr3	164668906	164669529	+	31.07569	NA	Intergenic	MER41A|LTR|ERV1	127066	NM_001041	6476	Hs.429596	NM_001041	HPRD:01962	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_20186	chr11	76784732	76784957	+	31.06931	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	6852	NM_004055	726	Hs.248153	NM_004055	HPRD:03963	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
19-PTNLD28-TUMOR_peak_100984	chr8	131510409	131510637	+	31.05952	NA	Intergenic	Intergenic	-54617	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_58765	chr2	231084504	231084944	+	31.05826	NA	5' UTR (NM_004510, exon 1 of 15)	5' UTR (NM_004510, exon 1 of 15)	103	NM_004510	3431	Hs.145150	NM_004509	HPRD:06832	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
19-PTNLD28-TUMOR_peak_15547	chr10	109874129	109874264	+	31.03454	NA	Intergenic	L1PA2|LINE|L1	-45145	NR_125760	103695365	Hs.648991	NR_125760		LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
19-PTNLD28-TUMOR_peak_30329	chr14	53329794	53329950	+	31.03454	NA	intron (NM_001135000, intron 12 of 14)	intron (NM_001135000, intron 12 of 14)	-71486	NM_198066	64841	Hs.478025	NM_198066	HPRD:17046	GNPNAT1	GNPNAT|Gpnat1	glucosamine-phosphate N-acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_47438	chr19	12822919	12823193	+	31.02504	NA	intron (NM_001136196, intron 9 of 24)	LTR13|LTR|ERVK	-5724	NR_002751	26810		NR_002751		SNORD41	RNU41|U41	small nucleolar RNA, C/D box 41	snoRNA
19-PTNLD28-TUMOR_peak_28720	chr13	95969365	95969649	+	31.02504	NA	Intergenic	LTR13A|LTR|ERVK	-15820	NM_005845	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_55400	chr2	121624920	121625266	+	30.98964	NA	intron (NM_005270, intron 1 of 12)	CpG	70226	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_65583	chr22	39859845	39860335	+	30.96303	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	6765	NM_002409	4248	Hs.276808	NM_002409	HPRD:07058	MGAT3	GNT-III|GNT3	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_81925	chr5	125936507	125937139	+	30.96119	NA	intron (NM_032177, intron 1 of 4)	CpG	216	NM_032177	51808	Hs.555731	NM_032177	HPRD:15122	PHAX	RNUXA	phosphorylated adaptor for RNA export	protein-coding
19-PTNLD28-TUMOR_peak_42992	chr17	64168803	64169170	+	30.95620	NA	intron (NM_145036, intron 4 of 26)	intron (NM_145036, intron 4 of 26)	19001	NM_145036	201134	Hs.408676	NM_145036	HPRD:11336	CEP112	CCDC46|MACOCO	centrosomal protein 112kDa	protein-coding
19-PTNLD28-TUMOR_peak_102373	chr9	19174254	19174459	+	30.95620	NA	Intergenic	Intergenic	-46752	NM_001122	123	Hs.3416	NM_001122	HPRD:00057	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
19-PTNLD28-TUMOR_peak_16725	chr11	3238463	3238731	+	30.93522	NA	promoter-TSS (NR_027138)	promoter-TSS (NR_027138)	-965	NR_027138	283303	Hs.151154	NM_173590	HPRD:08770	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81607	chr5	112689803	112690016	+	30.93237	NA	intron (NM_001085377, intron 2 of 18)	MLT1I|LTR|ERVL-MaLR	-59297	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_109329	chrX	119450527	119450701	+	30.93237	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-5223	NM_001104544	55026	Hs.437563	NM_017938	HPRD:06535	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
19-PTNLD28-TUMOR_peak_63300	chr21	35739726	35739895	+	30.93237	NA	intron (NM_172201, intron 1 of 1)	intron (NM_172201, intron 1 of 1)	3487	NM_172201	9992	Hs.551521	NM_172201		KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel, Isk-related family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_85237	chr6	9251126	9251314	+	30.93237	NA	Intergenic	Intergenic	598778	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_8139	chr1	170677216	170677403	+	30.93237	NA	intron (NM_006902, intron 1 of 4)	intron (NM_006902, intron 1 of 4)	43996	NM_022716	5396	Hs.283416	NM_006902	HPRD:01337	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_63486	chr21	39238499	39238662	+	30.93237	NA	intron (NM_002240, intron 1 of 3)	MLT2C1|LTR|ERVL	50161	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_27428	chr13	22621685	22621864	+	30.93237	NA	Intergenic	FRAM|SINE|Alu	-162650	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_79835	chr5	52244430	52244628	+	30.93237	NA	intron (NM_181501, intron 28 of 28)	intron (NM_181501, intron 28 of 28)	-40627	NM_002203	3673	Hs.482077	NM_002203	HPRD:01893	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_28096	chr13	45855264	45855431	+	30.93237	NA	intron (NM_004128, intron 7 of 7)	intron (NM_004128, intron 7 of 7)	56397	NR_002967	677814	Hs.374596	NR_002967		SNORA31	ACA31	small nucleolar RNA, H/ACA box 31	snoRNA
19-PTNLD28-TUMOR_peak_50908	chr2	8231206	8231414	+	30.93237	NA	intron (NR_034135, intron 7 of 8)	L2c|LINE|L2	-114365	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
19-PTNLD28-TUMOR_peak_56721	chr2	164457993	164458191	+	30.93237	NA	Intergenic	Intergenic	134421	NM_018086	55137	Hs.593650	NM_018086		FIGN	-	fidgetin	protein-coding
19-PTNLD28-TUMOR_peak_10204	chr1	221975549	221975739	+	30.93237	NA	Intergenic	Intergenic	-60126	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_109928	chrX	153251219	153251417	+	30.92391	NA	Intergenic	MIR3|SINE|MIR	-4691	NR_036175	100422877		NR_036175		MIR3202-2	-	microRNA 3202-2	ncRNA
19-PTNLD28-TUMOR_peak_31429	chr14	77577297	77577773	+	30.91147	NA	intron (NM_033426, intron 3 of 3)	intron (NM_033426, intron 3 of 3)	12957	NM_033426	85457	Hs.709066	NM_033426	HPRD:13890	CIPC	KIAA1737	CLOCK-interacting pacemaker	protein-coding
19-PTNLD28-TUMOR_peak_27551	chr13	27016790	27017054	+	30.91147	NA	Intergenic	L2c|LINE|L2	-114918	NM_001291965	10810	Hs.618732	NM_006646	HPRD:05458	WASF3	Brush-1|SCAR3|WAVE3	WAS protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_56637	chr2	161522903	161523203	+	30.91147	NA	Intergenic	Intergenic	-172735	NM_002897	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42465	chr17	55131569	55131998	+	30.86796	NA	Intergenic	Intergenic	8944	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_82527	chr5	138872364	138872663	+	30.86753	NA	Intergenic	Intergenic	-10170	NM_198282	340061	Hs.379754	NM_198282		TMEM173	ERIS|MITA|MPYS|NET23|SAVI|STING	transmembrane protein 173	protein-coding
19-PTNLD28-TUMOR_peak_107960	chrX	39441419	39441642	+	30.82910	NA	Intergenic	LTR16E1|LTR|ERVL	-190502	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
19-PTNLD28-TUMOR_peak_80418	chr5	68005189	68005390	+	30.82910	NA	Intergenic	Intergenic	-384487	NM_001251969	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_26422	chr12	113680489	113680717	+	30.79885	NA	intron (NM_017901, intron 2 of 27)	L2a|LINE|L2	-1463	NM_001301214	53373	Hs.524763	NM_017901	HPRD:18217	TPCN1	TPC1	two pore segment channel 1	protein-coding
19-PTNLD28-TUMOR_peak_4698	chr1	87858596	87858759	+	30.78943	NA	Intergenic	Intergenic	-21339	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
19-PTNLD28-TUMOR_peak_2807	chr1	41582934	41583117	+	30.78943	NA	intron (NM_001031694, intron 6 of 15)	LTR13|LTR|ERVK	42580	NM_001172222	22955	Hs.571874	NM_012236	HPRD:11540	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_6917	chr1	153054304	153054477	+	30.78943	NA	Intergenic	AluSz6|SINE|Alu	-10306	NM_001017418	6701	Hs.568239	NM_001017418	ENSG00000196805	SPRR2B	-	small proline-rich protein 2B	protein-coding
19-PTNLD28-TUMOR_peak_89877	chr6	148633233	148633636	+	30.77237	NA	Intergenic	L1ME1|LINE|L1	-30295	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_77939	chr4	166300048	166300287	+	30.77237	NA	promoter-TSS (NM_001873)	promoter-TSS (NM_001873)	70	NM_001873	1363	Hs.75360	NM_001873	HPRD:00272	CPE	-	carboxypeptidase E	protein-coding
19-PTNLD28-TUMOR_peak_32628	chr15	25772361	25772601	+	30.77237	NA	Intergenic	Intergenic	-88306	NM_130839	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_72662	chr3	182471698	182472100	+	30.77237	NA	Intergenic	LTR78|LTR|ERV1	-39392	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_56259	chr2	150454183	150454450	+	30.75863	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-9986	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_87106	chr6	36591765	36591954	+	30.70387	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1570	NR_037491	100500885		NR_037491	miRBase:MI0016433	MIR3925	-	microRNA 3925	ncRNA
19-PTNLD28-TUMOR_peak_63349	chr21	36447967	36448148	+	30.69558	NA	Intergenic	Intergenic	-26462	NM_001754	861	Hs.149261	NM_001754	HPRD:01043	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_65338	chr22	36770741	36770984	+	30.69343	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	13201	NM_002473	4627	Hs.474751	NM_002473	HPRD:01177	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin, heavy chain 9, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_68031	chr3	48264614	48264978	+	30.67825	NA	promoter-TSS (NM_004345)	promoter-TSS (NM_004345)	-41	NM_004345	820	Hs.51120	NM_004345	HPRD:02722	CAMP	CAP-18|CAP18|CRAMP|FALL-39|FALL39|LL37	cathelicidin antimicrobial peptide	protein-coding
19-PTNLD28-TUMOR_peak_88076	chr6	54666607	54666804	+	30.67119	NA	Intergenic	Intergenic	-44864	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_70916	chr3	133207878	133208072	+	30.67119	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-84459	NM_001134422	55573	Hs.518265	NM_017548	HPRD:13627	CDV3	H41	CDV3 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_50760	chr2	889002	889404	+	30.66826	NA	Intergenic	Intergenic	11934	NR_110179	101060385	Hs.385965	NR_110179	ENSG00000228799	LOC101060385	-	uncharacterized LOC101060385	ncRNA
19-PTNLD28-TUMOR_peak_102106	chr9	6136217	6136438	+	30.66826	NA	Intergenic	L1PA2|LINE|L1	-79459	NM_001199641	90865	Hs.731660	NM_033439	HPRD:12275	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding
19-PTNLD28-TUMOR_peak_95672	chr7	137655451	137655637	+	30.66377	NA	intron (NM_194071, intron 1 of 11)	intron (NM_194071, intron 1 of 11)	17450	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
19-PTNLD28-TUMOR_peak_91233	chr7	7216785	7216962	+	30.62355	NA	Intergenic	Intergenic	-5373	NM_020156	56913	Hs.239666	NM_020156	HPRD:16631	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_6890	chr1	152539204	152539463	+	30.62246	NA	promoter-TSS (NM_178435)	promoter-TSS (NM_178435)	-104	NM_178435	353145	Hs.490208	NM_178435	HPRD:13975	LCE3E	LEP17	late cornified envelope 3E	protein-coding
19-PTNLD28-TUMOR_peak_84319	chr5	176921348	176921518	+	30.60794	NA	intron (NR_103804, intron 2 of 12)	MIR3|SINE|MIR	3173	NM_203352	9260	Hs.533040	NM_005451	HPRD:10436	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7 (enigma)	protein-coding
19-PTNLD28-TUMOR_peak_90712	chr7	89360	89628	+	30.60556	NA	Intergenic	Intergenic	-60224	NR_108065	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
19-PTNLD28-TUMOR_peak_73188	chr3	190102165	190102357	+	30.59840	NA	Intergenic	Intergenic	-3400	NM_006580	10686	Hs.251391	NM_006580	HPRD:04906	CLDN16	HOMG3|PCLN1	claudin 16	protein-coding
19-PTNLD28-TUMOR_peak_4740	chr1	89365458	89365814	+	30.58433	NA	Intergenic	HERVL-int|LTR|ERVL	-8335	NM_001514	2959	Hs.481852	NM_001514	HPRD:08928	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
19-PTNLD28-TUMOR_peak_56213	chr2	149344285	149344533	+	30.56412	NA	Intergenic	Intergenic	-58151	NM_015630	26122	Hs.23270	NM_015630	HPRD:13274	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_30041	chr14	42218696	42218936	+	30.56412	NA	intron (NM_152447, intron 1 of 5)	L1PA14|LINE|L1	142052	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_35486	chr15	100890361	100890579	+	30.56243	NA	promoter-TSS (NR_028140)	promoter-TSS (NR_028140)	-32	NR_028140	388182	Hs.136982	NM_207383	HPRD:16960	SPATA41	-	spermatogenesis associated 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_56981	chr2	173118004	173118246	+	30.55496	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-150647	NM_004405	1746	Hs.419	NM_004405	HPRD:00527	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_97322	chr8	17194176	17194357	+	30.54868	NA	intron (NM_004686, intron 6 of 13)	intron (NM_004686, intron 6 of 13)	76774	NM_004686	9108	Hs.625674	NM_004686		MTMR7	-	myotubularin related protein 7	protein-coding
19-PTNLD28-TUMOR_peak_61118	chr20	39878047	39878243	+	30.54868	NA	intron (NM_015035, intron 2 of 3)	intron (NM_015035, intron 2 of 3)	50594	NM_015035	23051	Hs.380133	NM_015035	HPRD:10320	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
19-PTNLD28-TUMOR_peak_30412	chr14	55360014	55360229	+	30.54868	NA	intron (NM_001024070, intron 1 of 6)	intron (NM_001024070, intron 1 of 6)	9421	NM_001024070	2643	Hs.86724	NM_000161	HPRD:02573	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_104732	chr9	97647743	97647946	+	30.51283	NA	intron (NM_032823, intron 5 of 14)	MLT1J1|LTR|ERVL-MaLR	75600	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_22393	chr12	833717	833923	+	30.49136	NA	Intergenic	Intergenic	-28269	NM_001184985	65125	Hs.744906	NM_014823	HPRD:05570	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_96952	chr8	7023922	7024210	+	30.49136	NA	Intergenic	Intergenic	96948	NR_027000	349196	Hs.559040	NM_001025473		LINC00965	-	long intergenic non-protein coding RNA 965	ncRNA
19-PTNLD28-TUMOR_peak_11919	chr10	7562831	7563008	+	30.48152	NA	Intergenic	Intergenic	98717	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_32587	chr15	23510318	23510558	+	30.48152	NA	intron (NM_001271664, intron 9 of 11)	intron (NM_001271664, intron 9 of 11)	68919	NM_001271664	440243		NM_001271664		GOLGA6L22	-	golgin A6 family-like 22	protein-coding
19-PTNLD28-TUMOR_peak_10741	chr1	229650501	229650668	+	30.46202	NA	TTS (NR_110630)	TTS (NR_110630)	6407	NR_110630	101927478	Hs.229275	NR_110630		LOC101927478	-	uncharacterized LOC101927478	ncRNA
19-PTNLD28-TUMOR_peak_7811	chr1	163735620	163735766	+	30.43369	NA	Intergenic	Intergenic	-342712	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
19-PTNLD28-TUMOR_peak_63393	chr21	37470231	37470511	+	30.43369	NA	intron (NR_040084, intron 2 of 3)	THE1D|LTR|ERVL-MaLR	28149	NM_001757	873	Hs.88778	NM_001757	HPRD:00267	CBR1	CBR|SDR21C1|hCBR1	carbonyl reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_94445	chr7	101324494	101324664	+	30.42947	NA	Intergenic	Intergenic	-52003	NM_138403	93408	Hs.247831	NM_138403	HPRD:17620	MYL10	MYLC2PL|PLRLC	myosin, light chain 10, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_41194	chr17	36178384	36178593	+	30.42947	NA	Intergenic	MER5A|DNA|hAT-Charlie	65875	NR_024178	284100	Hs.434159	NM_001129906	ENSG00000267671	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_10357	chr1	224255380	224255594	+	30.42947	NA	Intergenic	Intergenic	-46302	NR_049764	23219	Hs.64691	NM_015176	HPRD:12367	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
19-PTNLD28-TUMOR_peak_28960	chr13	106838822	106839316	+	30.41129	NA	Intergenic	L2|LINE|L2	-189842	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
19-PTNLD28-TUMOR_peak_51868	chr2	29118556	29118728	+	30.41069	NA	intron (NM_015131, intron 1 of 17)	intron (NM_015131, intron 1 of 17)	1109	NM_015131	23160	Hs.622982	NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
19-PTNLD28-TUMOR_peak_92600	chr7	54417042	54417295	+	30.40442	NA	non-coding (NR_120516, exon 3 of 3)	non-coding (NR_120516, exon 3 of 3)	18778	NR_120516	102723605	Hs.154626	NR_120515		LINC01445	-	long intergenic non-protein coding RNA 1445	ncRNA
19-PTNLD28-TUMOR_peak_31104	chr14	70615623	70615978	+	30.40442	NA	intron (NM_033262, intron 2 of 7)	MIRb|SINE|MIR	39987	NM_058240	6547	Hs.337696	NM_033262	HPRD:09723	SLC8A3	NCX3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_21137	chr11	111671765	111672091	+	30.35540	NA	intron (NM_001077691, intron 14 of 14)	intron (NM_001077691, intron 14 of 14)	-34759	NM_181699	5519	Hs.269128	NM_002716	HPRD:04384	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2, regulatory subunit A, beta	protein-coding
19-PTNLD28-TUMOR_peak_107752	chrX	20479826	20480052	+	30.30503	NA	Intergenic	Intergenic	-195189	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_18524	chr11	48131472	48131708	+	30.29683	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-106772	NM_001005470	119765	Hs.553566	NM_001005470	HPRD:14960	OR4B1	OR11-106|OST208	olfactory receptor, family 4, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_92089	chr7	39353592	39354030	+	30.29683	NA	intron (NM_001166018, intron 5 of 10)	intron (NM_001166018, intron 5 of 10)	92134	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41173	chr17	35767199	35767548	+	30.24501	NA	promoter-TSS (NM_198834)	promoter-TSS (NM_198834)	61	NM_001488	6871	Hs.500066	NM_001488	HPRD:03784	TADA2A	ADA2|ADA2A|TADA2L|hADA2	transcriptional adaptor 2A	protein-coding
19-PTNLD28-TUMOR_peak_16553	chr11	1147983	1148135	+	30.24123	NA	Intergenic	Intergenic	73184	NM_002457	4583	Hs.315	NM_002457	HPRD:11828	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_89526	chr6	134362316	134362538	+	30.19598	NA	intron (NM_145176, intron 1 of 4)	intron (NM_145176, intron 1 of 4)	11362	NM_145176	154091	Hs.486508	NM_145176		SLC2A12	GLUT12|GLUT8	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_69632	chr3	108125542	108125733	+	30.19025	NA	intron (NM_014981, intron 33 of 41)	intron (NM_014981, intron 33 of 41)	95005	NM_001282557	11148	Hs.252351	NM_007072	HPRD:05082	HHLA2	B7H7	HERV-H LTR-associating 2	protein-coding
19-PTNLD28-TUMOR_peak_88364	chr6	74932706	74933101	+	30.19025	NA	intron (NR_110856, intron 1 of 3)	L1PA6|LINE|L1	153736	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_82821	chr5	141887112	141887430	+	30.17775	NA	Intergenic	Intergenic	106455	NM_033137	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_4399	chr1	76619909	76620312	+	30.15734	NA	intron (NM_152996, intron 1 of 4)	intron (NM_152996, intron 1 of 4)	79721	NM_001160011	256435	Hs.337040	NM_152996		ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_82383	chr5	136414094	136414417	+	30.15654	NA	intron (NM_004598, intron 5 of 10)	intron (NM_004598, intron 5 of 10)	420763	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_30189	chr14	50439579	50439862	+	30.13924	NA	Intergenic	Intergenic	6603	NR_106724	102464828		NR_106724		MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
19-PTNLD28-TUMOR_peak_85589	chr6	15443419	15443605	+	30.12595	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	194426	NM_001267040	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_107962	chrX	39478767	39479224	+	30.08849	NA	Intergenic	MamRep605|Unknown|Unknown	-227967	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
19-PTNLD28-TUMOR_peak_29201	chr13	114584574	114585081	+	30.07361	NA	Intergenic	Intergenic	-13249	NM_001278674	643365	Hs.740982	NM_001039767		LINC00452	-	long intergenic non-protein coding RNA 452	protein-coding
19-PTNLD28-TUMOR_peak_59661	chr20	5249164	5249342	+	30.05187	NA	Intergenic	LTR78B|LTR|ERV1	45762	NM_144773	128674	Hs.375029	NM_144773	HPRD:08453	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_109292	chrX	118646511	118646722	+	30.05187	NA	Intergenic	Intergenic	-43533	NR_028443	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92491	chr7	48676324	48676503	+	30.05187	NA	intron (NM_152701, intron 59 of 61)	intron (NM_152701, intron 59 of 61)	-287744	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_25725	chr12	97470795	97471074	+	30.03602	NA	Intergenic	AluSz|SINE|Alu	169690	NM_001135175	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_101334	chr8	139814467	139814917	+	30.01052	NA	intron (NM_152888, intron 11 of 64)	L2c|LINE|L2	111544	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_24752	chr12	57505107	57505276	+	30.00228	NA	promoter-TSS (NM_001178078)	promoter-TSS (NM_001178078)	5	NM_001178080	6778	Hs.524518	NM_003153	HPRD:03302	STAT6	D12S1644|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6, interleukin-4 induced	protein-coding
19-PTNLD28-TUMOR_peak_12057	chr10	12647598	12647905	+	29.97203	NA	intron (NM_020397, intron 2 of 9)	intron (NM_020397, intron 2 of 9)	26999	NR_039700	100616151		NR_039700		MIR4480	-	microRNA 4480	ncRNA
19-PTNLD28-TUMOR_peak_52487	chr2	44825586	44825757	+	29.96702	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	-49012	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_62862	chr21	18463246	18463478	+	29.94679	NA	Intergenic	L1PA3|LINE|L1	-347846	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_6425	chr1	146798795	146799156	+	29.93894	NA	Intergenic	L1PA3|LINE|L1	84684	NM_001256337	9557	Hs.191164	NM_004284	HPRD:09880	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_73097	chr3	188789369	188789552	+	29.92762	NA	Intergenic	Intergenic	-100303	NM_198485	285386	Hs.729544	NM_198485	HPRD:13451	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_72456	chr3	176545256	176545430	+	29.87613	NA	Intergenic	L1PA3|LINE|L1	-10554	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
19-PTNLD28-TUMOR_peak_32705	chr15	28368588	28368839	+	29.87613	NA	intron (NM_004667, intron 85 of 92)	intron (NM_004667, intron 85 of 92)	-24255	NM_000275	4948	Hs.654411	NM_000275	HPRD:01945	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
19-PTNLD28-TUMOR_peak_56410	chr2	155394391	155394792	+	29.87613	NA	Intergenic	Intergenic	-80641	NM_001256368	100144595	Hs.683952	NM_001256368		LOC100144595	-	uncharacterized LOC100144595	protein-coding
19-PTNLD28-TUMOR_peak_15353	chr10	104238782	104238998	+	29.87613	NA	TTS (NM_005736)	TTS (NM_005736)	17720	NM_024789	79847	Hs.309069	NM_024789	HPRD:12589	TMEM180	C10orf77|bA18I14.8	transmembrane protein 180	protein-coding
19-PTNLD28-TUMOR_peak_87122	chr6	36669252	36669752	+	29.85852	NA	intron (NM_001257357, intron 1 of 13)	L2c|LINE|L2	3874	NM_001257357	401258	Hs.485258	NM_207498		RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_36893	chr16	24150729	24150930	+	29.85456	NA	intron (NM_212535, intron 9 of 16)	intron (NM_212535, intron 9 of 16)	-116045	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_62150	chr20	53822336	53822530	+	29.80416	NA	Intergenic	L1PA16|LINE|L1	-217148	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_65656	chr22	41215406	41215624	+	29.77376	NA	promoter-TSS (NR_104235)	promoter-TSS (NR_104235)	-112	NM_006358	10478	Hs.474938	NM_006358	HPRD:08425	SLC25A17	PMP34	solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17	protein-coding
19-PTNLD28-TUMOR_peak_37699	chr16	49475374	49475666	+	29.77376	NA	Intergenic	Intergenic	67712	NM_144602	123970	Hs.125875	NM_144602	HPRD:14560	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_23475	chr12	26471161	26471461	+	29.69671	NA	Intergenic	Intergenic	122805	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_32577	chr15	23272866	23273151	+	29.68737	NA	Intergenic	AluSp|SINE|Alu	17766	NR_024074	283796	Hs.375441	NR_024074	HPRD:08189	GOLGA8I	GOLGA8IP|GOLGA9P	golgin A8 family, member I	pseudo
19-PTNLD28-TUMOR_peak_55966	chr2	137201906	137202266	+	29.68737	NA	Intergenic	Intergenic	-326361	NM_003467	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_69192	chr3	78635683	78635843	+	29.68330	NA	Intergenic	HERVH-int|LTR|ERV1	432846	NM_001145845	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_98064	chr8	31336508	31336774	+	29.68278	NA	Intergenic	MER5A|DNA|hAT-Charlie	-160627	NM_013962	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_87003	chr6	35336301	35336546	+	29.68040	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	26088	NM_177435	5467	Hs.696032	NM_006238	HPRD:02679	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
19-PTNLD28-TUMOR_peak_406	chr1	6748178	6748354	+	29.67173	NA	intron (NM_018198, intron 1 of 15)	intron (NM_018198, intron 1 of 15)	13700	NM_018198	55735	Hs.462640	NM_018198	HPRD:07112	DNAJC11	dJ126A5.1	DnaJ (Hsp40) homolog, subfamily C, member 11	protein-coding
19-PTNLD28-TUMOR_peak_82624	chr5	139724337	139724594	+	29.66293	NA	intron (NM_001945, intron 2 of 5)	intron (NM_001945, intron 2 of 5)	1723	NM_001945	1839	Hs.799	NM_001945	HPRD:00526	HBEGF	DTR|DTS|DTSF|HEGFL	heparin-binding EGF-like growth factor	protein-coding
19-PTNLD28-TUMOR_peak_27932	chr13	40846536	40846826	+	29.66293	NA	Intergenic	Intergenic	-52042	NR_033877	400123	Hs.577960	NR_033877		LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
19-PTNLD28-TUMOR_peak_101938	chr9	1223883	1224172	+	29.66293	NA	Intergenic	L1PA2|LINE|L1	173407	NM_181872	10655	Hs.59506	NM_006557	HPRD:16079	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_77239	chr4	140910659	140910850	+	29.64861	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	164479	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_98167	chr8	37194213	37194486	+	29.63194	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	157082	NR_121620	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_405	chr1	6736114	6736309	+	29.63194	NA	intron (NM_018198, intron 3 of 15)	MER102c|DNA|hAT-Charlie	25755	NM_018198	55735	Hs.462640	NM_018198	HPRD:07112	DNAJC11	dJ126A5.1	DnaJ (Hsp40) homolog, subfamily C, member 11	protein-coding
19-PTNLD28-TUMOR_peak_49954	chr19	50872520	50872716	+	29.62897	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3687	NM_004851	9476	Hs.512843	NM_004851	HPRD:07064	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
19-PTNLD28-TUMOR_peak_95769	chr7	139305661	139305858	+	29.62365	NA	intron (NM_022740, intron 6 of 14)	intron (NM_022740, intron 6 of 14)	97085	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2, member L	protein-coding
19-PTNLD28-TUMOR_peak_66430	chr3	9151127	9151520	+	29.59656	NA	intron (NM_001033117, intron 2 of 21)	L2c|LINE|L2	-82854	NR_121664	101927416	Hs.475364	NR_121663		LOC101927416	-	uncharacterized LOC101927416	ncRNA
19-PTNLD28-TUMOR_peak_21739	chr11	122532258	122532552	+	29.59262	NA	intron (NM_032873, intron 1 of 13)	MIRc|SINE|MIR	6007	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_69301	chr3	90007404	90007688	+	29.58274	NA	Intergenic	L1PA2|LINE|L1	850872	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_99979	chr8	106437242	106437578	+	29.57088	NA	intron (NM_012082, intron 2 of 7)	intron (NM_012082, intron 2 of 7)	106263	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_5662	chr1	114301562	114302385	+	29.56458	NA	promoter-TSS (NM_006608)	promoter-TSS (NM_006608)	-196	NM_006608	10745	Hs.655824	NM_006608	HPRD:09227	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_94275	chr7	99760813	99760975	+	29.52809	NA	intron (NM_024637, intron 3 of 3)	intron (NM_024637, intron 3 of 3)	-4592	NM_018275	55262	Hs.533139	NM_018275	HPRD:07716	C7orf43	-	chromosome 7 open reading frame 43	protein-coding
19-PTNLD28-TUMOR_peak_105913	chr9	124505761	124505971	+	29.51252	NA	intron (NM_138709, intron 1 of 13)	intron (NM_138709, intron 1 of 13)	802	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_7565	chr1	159976193	159976367	+	29.51252	NA	Intergenic	Intergenic	25503	NM_145167	93183	Hs.552810	NM_145167	HPRD:15133	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding
19-PTNLD28-TUMOR_peak_38457	chr16	69048761	69049142	+	29.51075	NA	intron (NM_024562, intron 15 of 17)	intron (NM_024562, intron 15 of 17)	-90516	NM_001199280	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_100734	chr8	127330743	127331353	+	29.50249	NA	Intergenic	L1PA2|LINE|L1	-6692	NR_125421	101927657	Hs.552133	NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
19-PTNLD28-TUMOR_peak_109170	chrX	109978146	109978439	+	29.44279	NA	intron (NM_001143981, intron 4 of 11)	intron (NM_001143981, intron 4 of 11)	60784	NM_145234	91851	Hs.496587	NM_145234	HPRD:02285	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_63734	chr21	43534254	43534442	+	29.44263	NA	intron (NM_001004416, intron 13 of 22)	intron (NM_001004416, intron 13 of 22)	-5704	NR_027243	150147	Hs.558646	NM_152507	HPRD:10740	C21orf128	-	chromosome 21 open reading frame 128	ncRNA
19-PTNLD28-TUMOR_peak_49786	chr19	49495569	49495709	+	29.44044	NA	intron (NM_002103, intron 1 of 15)	intron (NM_002103, intron 1 of 15)	971	NR_027763	2997	Hs.386225	NM_002103	HPRD:00721	GYS1	GSY|GYS	glycogen synthase 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_79419	chr5	34179716	34180008	+	29.43229	NA	Intergenic	Intergenic	-55229	NR_037951	100534612	Hs.171929	NR_037951		C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA
19-PTNLD28-TUMOR_peak_4276	chr1	68735433	68735602	+	29.42547	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-37233	NM_024911	79971	Hs.647659	NM_024911	HPRD:10980	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
19-PTNLD28-TUMOR_peak_21229	chr11	112985306	112985451	+	29.42547	NA	intron (NM_181351, intron 2 of 19)	intron (NM_181351, intron 2 of 19)	-151196	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
19-PTNLD28-TUMOR_peak_53227	chr2	67953637	67953872	+	29.42547	NA	Intergenic	Intergenic	98940	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_37966	chr16	56511129	56511279	+	29.42547	NA	3' UTR (NM_018233, exon 13 of 13)	3' UTR (NM_018233, exon 13 of 13)	25780	NM_018233	55239	Hs.231883	NM_018233		OGFOD1	TPA1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_56780	chr2	166451473	166451662	+	29.42547	NA	5' UTR (NM_001172173, exon 4 of 7)	5' UTR (NM_001172173, exon 4 of 7)	22721	NM_024969	80034	Hs.470479	NM_024969	HPRD:18144	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
19-PTNLD28-TUMOR_peak_79859	chr5	53345858	53346100	+	29.42547	NA	intron (NM_019087, intron 4 of 4)	intron (NM_019087, intron 4 of 4)	-98550	NR_030307	693166		NR_030307		MIR581	MIRN581|hsa-mir-581	microRNA 581	ncRNA
19-PTNLD28-TUMOR_peak_83881	chr5	170490704	170490866	+	29.42547	NA	intron (NM_022897, intron 14 of 27)	L1PA3|LINE|L1	201889	NM_022897	64901	Hs.410810	NM_022897	HPRD:05847	RANBP17	-	RAN binding protein 17	protein-coding
19-PTNLD28-TUMOR_peak_104800	chr9	99042347	99042597	+	29.42547	NA	intron (NM_000197, intron 2 of 10)	MER4D1|LTR|ERV1	21962	NM_000197	3293	Hs.477	NM_000197	HPRD:05716	HSD17B3	EDH17B3|SDR12C2	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding
19-PTNLD28-TUMOR_peak_80076	chr5	57853516	57853663	+	29.42547	NA	intron (NR_109904, intron 1 of 3)	L1PA2|LINE|L1	481	NR_109904	101928600	Hs.694699	NR_109904	ENSG00000250127	LOC101928600	-	uncharacterized LOC101928600	ncRNA
19-PTNLD28-TUMOR_peak_4792	chr1	90339453	90339655	+	29.42547	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	52074	NM_018103	55144	Hs.482087	NM_018103	HPRD:11287	LRRC8D	LRRC5	leucine rich repeat containing 8 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_31509	chr14	81462739	81462960	+	29.42547	NA	intron (NM_001018036, intron 1 of 8)	intron (NM_001018036, intron 1 of 8)	40980	NM_000369	7253	Hs.160411	NM_000369	HPRD:04537	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_37943	chr16	56000102	56000311	+	29.42547	NA	Intergenic	Intergenic	-10263	NM_001190158	221223	Hs.350800	NM_145024	HPRD:07016	CES5A	CAUXIN|CES4C1|CES5|CES7|HEL126	carboxylesterase 5A	protein-coding
19-PTNLD28-TUMOR_peak_100543	chr8	124656421	124656567	+	29.42547	NA	Intergenic	Intergenic	8696	NM_001081675	340359	Hs.450252	NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch-like family member 38	protein-coding
19-PTNLD28-TUMOR_peak_57264	chr2	181497333	181497497	+	29.42547	NA	Intergenic	L2a|LINE|L2	-59416	NR_104322	101669767		NR_104319		SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_62932	chr21	22737283	22737514	+	29.42547	NA	intron (NM_004540, intron 8 of 17)	L1MEc|LINE|L1	79576	NR_046937	100873771		NR_046937	ENSG00000222791	RNU6-67P	RNU6-67	RNA, U6 small nuclear 67, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_91420	chr7	17736185	17736378	+	29.42547	NA	Intergenic	Intergenic	-137748	NR_110013	101927630	Hs.583400	NR_110013		LOC101927630	-	uncharacterized LOC101927630	ncRNA
19-PTNLD28-TUMOR_peak_17863	chr11	32830865	32831021	+	29.42547	NA	Intergenic	Intergenic	-14739	NM_001008391	493860	Hs.706808	NM_001008391	HPRD:17414	CCDC73	NY-SAR-79	coiled-coil domain containing 73	protein-coding
19-PTNLD28-TUMOR_peak_109623	chrX	138295592	138295824	+	29.42547	NA	Intergenic	MLT2E|LTR|ERVL	-8523	NM_001139500	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_9962	chr1	212330648	212330975	+	29.42533	NA	Intergenic	Intergenic	79856	NR_036068	100422947		NR_036068		MIR3122	-	microRNA 3122	ncRNA
19-PTNLD28-TUMOR_peak_58648	chr2	225682919	225683192	+	29.42533	NA	intron (NM_001290263, intron 29 of 55)	Tigger3d|DNA|TcMar-Tigger	128727	NM_001290263	55619	Hs.46578	NM_014689	HPRD:10919	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
19-PTNLD28-TUMOR_peak_43338	chr17	72755001	72755222	+	29.42362	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	10359	NR_037409	100500847		NR_037409	miRBase:MI0016005	MIR3615	-	microRNA 3615	ncRNA
19-PTNLD28-TUMOR_peak_66346	chr3	7739296	7739586	+	29.41384	NA	intron (NM_181874, intron 10 of 10)	intron (NM_181874, intron 10 of 10)	-162470	NR_046606	100873937	Hs.570608	NR_046606		GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95068	chr7	127484834	127485012	+	29.37117	NA	intron (NM_014390, intron 12 of 23)	intron (NM_014390, intron 12 of 23)	-152639	NR_027330	27099	Hs.657377	NM_014411		SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20575	chr11	92788113	92788339	+	29.37117	NA	Intergenic	Intergenic	85437	NM_005959	4544	Hs.569039	NM_005959	HPRD:02882	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
19-PTNLD28-TUMOR_peak_59215	chr2	240746059	240746305	+	29.34339	NA	Intergenic	MSTB|LTR|ERVL-MaLR	61628	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_1141	chr1	17311235	17311536	+	29.31794	NA	Intergenic	Intergenic	-3304	NM_017459	4237	Hs.389137	NM_002403	HPRD:01137	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_19098	chr11	63713355	63713616	+	29.30603	NA	intron (NM_001300800, intron 2 of 7)	intron (NM_001300800, intron 2 of 7)	6682	NM_001300800	79829	Hs.523753	NM_024771	HPRD:07838	NAA40	NAT11|PATT1	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_61607	chr20	47139797	47140003	+	29.27214	NA	Intergenic	UCON12|Unknown|Unknown	151246	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_68930	chr3	69714209	69714579	+	29.27214	NA	Intergenic	Intergenic	-74192	NM_198159	4286	Hs.166017	NM_000248	HPRD:01138	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_7923	chr1	165823390	165823654	+	29.25605	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	26790	NM_012474	7371	Hs.458360	NM_012474		UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_72001	chr3	158352696	158352857	+	29.25605	NA	Intergenic	L1PA2|LINE|L1	-9541	NM_024996	85476	Hs.518355	NM_024996	HPRD:07365	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1	G elongation factor, mitochondrial 1	protein-coding
19-PTNLD28-TUMOR_peak_37949	chr16	56296085	56296331	+	29.22672	NA	intron (NM_138736, intron 2 of 7)	intron (NM_138736, intron 2 of 7)	16776	NR_037499	100500891		NR_037499		MIR3935	-	microRNA 3935	ncRNA
19-PTNLD28-TUMOR_peak_39287	chr16	87662687	87662854	+	29.19896	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	26277	NM_001271605	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_52484	chr2	44809596	44809900	+	29.19717	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	-33089	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_1525	chr1	24439106	24439278	+	29.17208	NA	promoter-TSS (NM_152372)	promoter-TSS (NM_152372)	-527	NM_152372	127294	Hs.523413	NM_152372	HPRD:08200	MYOM3	-	myomesin 3	protein-coding
19-PTNLD28-TUMOR_peak_82384	chr5	136427095	136427468	+	29.17208	NA	intron (NM_004598, intron 5 of 10)	intron (NM_004598, intron 5 of 10)	407737	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_2144	chr1	32913989	32914242	+	29.13659	NA	Intergenic	LTR13|LTR|ERVK	-16543	NM_001145720	728116	Hs.647658	NM_001145720		ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
19-PTNLD28-TUMOR_peak_99748	chr8	101839318	101839486	+	29.13659	NA	Intergenic	Intergenic	-105087	NM_002568	26986	Hs.387804	NM_002568	HPRD:05247	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_17140	chr11	11102973	11103187	+	29.13659	NA	Intergenic	Intergenic	223316	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18257	chr11	44598811	44599070	+	29.08062	NA	intron (NM_001024844, intron 1 of 8)	intron (NM_001024844, intron 1 of 8)	11799	NM_001024844	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_57450	chr2	191224630	191224816	+	29.07716	NA	intron (NM_001128928, intron 2 of 6)	intron (NM_001128928, intron 2 of 6)	16527	NM_002194	3628	Hs.32309	NM_002194	HPRD:00923	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_83054	chr5	147754429	147754566	+	29.07016	NA	intron (NR_105057, intron 2 of 4)	intron (NR_105057, intron 2 of 4)	8916	NR_105057	102546294	Hs.660461	NR_105057		LOC102546294	-	uncharacterized LOC102546294	ncRNA
19-PTNLD28-TUMOR_peak_72598	chr3	179570054	179570246	+	29.07016	NA	intron (NM_001256755, intron 7 of 13)	MLT1F1|LTR|ERVL-MaLR	-45832	NR_110059	101928790	Hs.667247	NR_110059	ENSG00000244302	LOC101928790	-	uncharacterized LOC101928790	ncRNA
19-PTNLD28-TUMOR_peak_68559	chr3	57791470	57791728	+	29.04683	NA	intron (NM_007159, intron 1 of 20)	L2c|LINE|L2	48425	NM_007159	7871	Hs.476432	NM_007159	HPRD:04079	SLMAP	SLAP	sarcolemma associated protein	protein-coding
19-PTNLD28-TUMOR_peak_87195	chr6	37293576	37293760	+	29.03175	NA	intron (NM_017772, intron 12 of 12)	intron (NM_017772, intron 12 of 12)	-28080	NR_046399	9025	Hs.485278	NM_003958	HPRD:11521	RNF8	hRNF8	ring finger protein 8, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_23012	chr12	10373042	10373252	+	29.00568	NA	exon (NM_031412, exon 3 of 4)	exon (NM_031412, exon 3 of 4)	7658	NM_031412	23710	Hs.524250	NM_031412	HPRD:07601	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA(A) receptor-associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_52237	chr2	38918110	38918267	+	29.00568	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	25136	NM_138801	130589	Hs.435012	NM_138801	HPRD:13559	GALM	GLAT|HEL-S-63p|IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
19-PTNLD28-TUMOR_peak_48634	chr19	35464187	35464361	+	28.98800	NA	Intergenic	Intergenic	-9321	NM_175872	126375	Hs.50405	NM_175872	HPRD:13430	ZNF792	-	zinc finger protein 792	protein-coding
19-PTNLD28-TUMOR_peak_11215	chr1	238252251	238252534	+	28.98800	NA	Intergenic	LTR51|LTR|ERV1	-198170	NM_021186	57829	Hs.136241	NM_021186		ZP4	ZBP|ZP1|ZPB|Zp-4	zona pellucida glycoprotein 4	protein-coding
19-PTNLD28-TUMOR_peak_3690	chr1	55421213	55421414	+	28.98064	NA	Intergenic	MER51B|LTR|ERV1	-25152	NM_182532	199964	Hs.663950	NM_182532	HPRD:14121	TMEM61	-	transmembrane protein 61	protein-coding
19-PTNLD28-TUMOR_peak_2089	chr1	32321215	32321378	+	28.97779	NA	Intergenic	Intergenic	-39644	NM_144569	90853	Hs.62604	NM_144569	HPRD:08057	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51007	chr2	9893350	9893595	+	28.97466	NA	Intergenic	Intergenic	-90099	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_104524	chr9	93319300	93319494	+	28.96355	NA	intron (NR_034157, intron 1 of 5)	intron (NR_034157, intron 1 of 5)	25631	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
19-PTNLD28-TUMOR_peak_26003	chr12	106305857	106306051	+	28.95822	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	205402	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_24123	chr12	49659247	49659505	+	28.95762	NA	intron (NM_032704, intron 1 of 3)	intron (NM_032704, intron 1 of 3)	511	NM_032704	84790	Hs.652390	NM_032704	HPRD:06747	TUBA1C	TUBA6|bcm948	tubulin, alpha 1c	protein-coding
19-PTNLD28-TUMOR_peak_19621	chr11	68768292	68768524	+	28.95504	NA	Intergenic	Tigger11a|DNA|TcMar-Tigger	-11414	NR_120541	101928200	Hs.703759	NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76920	chr4	123985689	123985944	+	28.94445	NA	intron (NM_145207, intron 13 of 15)	intron (NM_145207, intron 13 of 15)	141591	NM_145207	166378	Hs.709648	NM_145207	HPRD:11595	SPATA5	AFG2|SPAF	spermatogenesis associated 5	protein-coding
19-PTNLD28-TUMOR_peak_103205	chr9	42242643	42242899	+	28.92350	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-125532	NM_001012421	441430	Hs.632663	NM_001012421	HPRD:18652	ANKRD20A2	-	ankyrin repeat domain 20 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_18226	chr11	44052226	44052512	+	28.92350	NA	Intergenic	Intergenic	-17162	NM_001031854	390110	Hs.558851	NM_001031854	ENSG00000205126	ACCSL	-	1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like	protein-coding
19-PTNLD28-TUMOR_peak_49547	chr19	47428801	47429101	+	28.89566	NA	intron (NM_004491, intron 1 of 5)	MIR|SINE|MIR	7018	NM_004491	2909	Hs.509447	NM_004491	HPRD:05592	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
19-PTNLD28-TUMOR_peak_109406	chrX	128737965	128738167	+	28.88434	NA	Intergenic	MER61A|LTR|ERV1	50867	NM_017413	8862	Hs.303084	NM_017413	HPRD:02246	APLN	APEL|XNPEP2	apelin	protein-coding
19-PTNLD28-TUMOR_peak_8306	chr1	174933713	174933882	+	28.88434	NA	promoter-TSS (NM_001243764)	promoter-TSS (NM_001243764)	-108	NM_001243764	9910	Hs.585378	NM_014857	HPRD:16464	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_60483	chr20	30843206	30843361	+	28.87022	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-22171	NM_004798	9371	Hs.369670	NM_004798	HPRD:04781	KIF3B	FLA8|HH0048|KLP-11	kinesin family member 3B	protein-coding
19-PTNLD28-TUMOR_peak_73435	chr3	194761551	194761805	+	28.86458	NA	Intergenic	Intergenic	-53639	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89335	chr6	125047287	125047420	+	28.86458	NA	intron (NM_001300740, intron 3 of 5)	L1PA2|LINE|L1	-236338	NM_001286398	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_78671	chr5	1429522	1429824	+	28.84188	NA	intron (NM_001044, intron 4 of 14)	intron (NM_001044, intron 4 of 14)	15870	NM_001044	6531	Hs.406	NM_001044	HPRD:00543	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 (neurotransmitter transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_83497	chr5	157315936	157316125	+	28.84188	NA	Intergenic	MIRc|SINE|MIR	-29847	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_84335	chr5	177034514	177034688	+	28.82476	NA	intron (NM_007255, intron 3 of 5)	intron (NM_007255, intron 3 of 5)	7482	NM_007255	11285	Hs.455109	NM_007255	HPRD:05060	B4GALT7	EDSP1|XGALT1|XGPT1	xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7	protein-coding
19-PTNLD28-TUMOR_peak_27998	chr13	42317159	42317412	+	28.82029	NA	intron (NM_001009814, intron 21 of 25)	L2c|LINE|L2	-174754	NR_049803	100847026		NR_049803		MIR5006	-	microRNA 5006	ncRNA
19-PTNLD28-TUMOR_peak_4313	chr1	70785520	70785829	+	28.82029	NA	intron (NM_030816, intron 3 of 12)	intron (NM_030816, intron 3 of 12)	34743	NM_030816	81573	Hs.744989	NM_030816	HPRD:13176	ANKRD13C	dJ677H15.3	ankyrin repeat domain 13C	protein-coding
19-PTNLD28-TUMOR_peak_41535	chr17	40670589	40670783	+	28.80052	NA	intron (NM_001130021, intron 21 of 21)	intron (NM_001130021, intron 21 of 21)	4480	NR_049808	100847046		NR_049808		MIR5010	-	microRNA 5010	ncRNA
19-PTNLD28-TUMOR_peak_104534	chr9	93677232	93677471	+	28.79025	NA	Intergenic	Intergenic	87649	NM_001174167	6850	Hs.371720	NM_003177	HPRD:02514	SYK	p72-Syk	spleen tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_23681	chr12	32543606	32544141	+	28.79025	NA	Intergenic	LTR12D|LTR|ERV1	-111168	NM_139241	121512	Hs.117835	NM_139241	HPRD:16891	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_24183	chr12	50497674	50498055	+	28.79025	NA	exon (NM_005276, exon 1 of 8)	exon (NM_005276, exon 1 of 8)	262	NM_001257199	2819	Hs.524418	NM_005276	HPRD:00714	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_25024	chr12	65672392	65672690	+	28.78153	NA	promoter-TSS (NM_001193461)	promoter-TSS (NM_001193461)	118	NM_001031679	253827	Hs.339024	NM_198080	HPRD:14785	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
19-PTNLD28-TUMOR_peak_97276	chr8	15364150	15364483	+	28.78153	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-33280	NM_006765	7991	Hs.426324	NM_006765	HPRD:03228	TUSC3	D8S1992|M33|MRT22|MRT7|N33|OST3A	tumor suppressor candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_91139	chr7	5971632	5971898	+	28.76313	NA	intron (NM_001099697, intron 19 of 20)	intron (NM_001099697, intron 19 of 20)	33424	NM_015622	51622	Hs.530000	NM_015622	HPRD:12915	CCZ1	C7orf28A|CCZ1A|H_DJ1163J12.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_30601	chr14	59949561	59949755	+	28.76152	NA	intron (NM_144581, intron 1 of 4)	intron (NM_144581, intron 1 of 4)	1415	NM_144581	112849	Hs.729061	NM_144581	HPRD:08065	L3HYPDH	C14orf149	L-3-hydroxyproline dehydratase (trans-)	protein-coding
19-PTNLD28-TUMOR_peak_87784	chr6	46010213	46010379	+	28.75729	NA	intron (NM_001114086, intron 1 of 5)	intron (NM_001114086, intron 1 of 5)	-26670	NM_016929	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_77874	chr4	160725561	160725790	+	28.75261	NA	Intergenic	L1PA3|LINE|L1	536677	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_41024	chr17	32078109	32078331	+	28.75261	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	-217441	NR_037584	100506677	Hs.652571	NR_037584		AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
19-PTNLD28-TUMOR_peak_5560	chr1	112438123	112438515	+	28.75261	NA	intron (NM_172198, intron 2 of 6)	intron (NM_172198, intron 2 of 6)	-38792	NR_046783	100874295	Hs.738190	NR_046783		KCND3-IT1	-	KCND3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_102769	chr9	34279522	34279751	+	28.75261	NA	intron (NM_194313, intron 6 of 12)	intron (NM_194313, intron 6 of 12)	49562	NM_194313	347240	Hs.710246	NM_194313	HPRD:12963	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
19-PTNLD28-TUMOR_peak_88019	chr6	53361696	53361897	+	28.75261	NA	TTS (NM_001498)	TTS (NM_001498)	48131	NM_001197115	2729	Hs.654465	NM_001498	HPRD:06032	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase, catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_40535	chr17	19105899	19106024	+	28.73780	NA	Intergenic	Intergenic	-16734	NM_001291904	79999	Hs.677375	NM_024934		LOC79999	-	uncharacterized LOC79999	protein-coding
19-PTNLD28-TUMOR_peak_101133	chr8	134418869	134419079	+	28.73780	NA	Intergenic	Intergenic	-109427	NM_006096	10397	Hs.372914	NM_006096	HPRD:05586	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_103321	chr9	45450702	45450886	+	28.72749	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-445504	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_19339	chr11	65708715	65709161	+	28.72749	NA	Intergenic	L2|LINE|L2	-4177	NM_152762	254187	Hs.350671	NM_152762	HPRD:08147	TSGA10IP	FAM161C	testis specific, 10 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_72581	chr3	179066158	179066338	+	28.70941	NA	intron (NM_033540, intron 1 of 17)	intron (NM_033540, intron 1 of 17)	768	NM_033540	55669	Hs.478383	NM_017927	HPRD:16344	MFN1	hfzo1|hfzo2	mitofusin 1	protein-coding
19-PTNLD28-TUMOR_peak_88284	chr6	73280221	73280395	+	28.69640	NA	Intergenic	L1PA2|LINE|L1	-51263	NM_001160132	56479	Hs.445324	NM_019842	HPRD:16241	KCNQ5	Kv7.5	potassium voltage-gated channel, KQT-like subfamily, member 5	protein-coding
19-PTNLD28-TUMOR_peak_60213	chr20	23587255	23587438	+	28.69640	NA	promoter-TSS (NM_001008693)	promoter-TSS (NM_001008693)	-736	NM_001008693	128822	Hs.698020	NM_001008693	HPRD:16768	CST9	CLM|CTES7A	cystatin 9 (testatin)	protein-coding
19-PTNLD28-TUMOR_peak_32510	chr15	22070025	22070195	+	28.69640	NA	intron (NR_110752, intron 6 of 7).2	MER1A|DNA|hAT-Charlie	12693	NR_102390	100287399	Hs.722659	NM_001277303	ENSG00000230031	POTEB2	-	POTE ankyrin domain family, member B2	protein-coding
19-PTNLD28-TUMOR_peak_30440	chr14	55802994	55803183	+	28.67981	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	64216	NM_152231	55030	Hs.525348	NM_017943	HPRD:16442	FBXO34	Fbx34	F-box protein 34	protein-coding
19-PTNLD28-TUMOR_peak_14466	chr10	79452598	79452830	+	28.67981	NA	Intergenic	Intergenic	-55137	NM_001271522	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_65267	chr22	35711902	35712520	+	28.65252	NA	intron (NR_024194, intron 1 of 14)	intron (NR_024194, intron 1 of 14)	16414	NR_024195	10043	Hs.474705	NM_005488	HPRD:05265	TOM1	-	target of myb1 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_66646	chr3	12176637	12176816	+	28.64124	NA	intron (NM_133625, intron 2 of 13)	intron (NM_133625, intron 2 of 13)	24125	NM_003256	7079	Hs.591665	NM_003256	HPRD:03557	TIMP4	-	TIMP metallopeptidase inhibitor 4	protein-coding
19-PTNLD28-TUMOR_peak_6875	chr1	152359473	152359768	+	28.64124	NA	Intergenic	Intergenic	27130	NM_016190	49860	Hs.242057	NM_016190	HPRD:12720	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
19-PTNLD28-TUMOR_peak_108292	chrX	49087352	49087712	+	28.61376	NA	intron (NM_005183, intron 3 of 47)	intron (NM_005183, intron 3 of 47)	2301	NM_001256790	778	Hs.632799	NM_005183	HPRD:02119	CACNA1F	AIED|COD3|COD4|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|Cav1.4alpha1|JM8|JMC8|OA2	calcium channel, voltage-dependent, L type, alpha 1F subunit	protein-coding
19-PTNLD28-TUMOR_peak_36423	chr16	14472268	14472437	+	28.61376	NA	Intergenic	Intergenic	69210	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_20584	chr11	93013041	93013467	+	28.60017	NA	Intergenic	Intergenic	-50629	NM_181645	159989	Hs.436625	NM_181645	HPRD:08689	CCDC67	-	coiled-coil domain containing 67	protein-coding
19-PTNLD28-TUMOR_peak_98230	chr8	37947992	37948276	+	28.60017	NA	Intergenic	HERV1_I-int|LTR|ERV1	-14877	NM_004674	9070	Hs.521530	NM_004674	HPRD:05309	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78852	chr5	9888665	9888975	+	28.60017	NA	intron (NR_027112, intron 2 of 12)	intron (NR_027112, intron 2 of 12)	15116	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LOC285692	-	uncharacterized LOC285692	ncRNA
19-PTNLD28-TUMOR_peak_103145	chr9	40757435	40757766	+	28.59542	NA	Intergenic	Intergenic	34512	NM_033160	26149	Hs.522147	NM_033160	HPRD:11342	ZNF658	-	zinc finger protein 658	protein-coding
19-PTNLD28-TUMOR_peak_104872	chr9	100310752	100310960	+	28.59542	NA	intron (NM_001166116, intron 3 of 9)	intron (NM_001166116, intron 3 of 9)	46935	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_10776	chr1	230312745	230313127	+	28.57824	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	109994	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_104212	chr9	86876180	86876306	+	28.57622	NA	Intergenic	Intergenic	79451	NM_001199633	64078	Hs.535966	NM_022127	HPRD:12200	SLC28A3	CNT3	solute carrier family 28 (concentrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_74870	chr4	26841296	26841580	+	28.57622	NA	Intergenic	Intergenic	-20875	NM_001169117	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_66762	chr3	13699324	13699625	+	28.57143	NA	intron (NR_027103, intron 1 of 5)	intron (NR_027103, intron 1 of 5)	7253	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
19-PTNLD28-TUMOR_peak_86877	chr6	33670281	33670412	+	28.57143	NA	intron (NM_032340, intron 1 of 3)	intron (NM_032340, intron 1 of 3)	9182	NM_032340	84300	Hs.745020	NM_032340	HPRD:12847	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_24783	chr12	57940184	57940370	+	28.56233	NA	intron (NM_001261413, intron 1 of 13)	intron (NM_001261413, intron 1 of 13)	837	NM_001261413	10540	Hs.289123	NM_006400	HPRD:09568	DCTN2	DCTN50|DYNAMITIN|HEL-S-77|RBP50	dynactin 2 (p50)	protein-coding
19-PTNLD28-TUMOR_peak_17438	chr11	16967574	16967762	+	28.53091	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	68295	NM_175058	144100	Hs.12332	NM_175058	HPRD:15142	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
19-PTNLD28-TUMOR_peak_76549	chr4	109434299	109434556	+	28.53091	NA	Intergenic	Intergenic	107186	NR_026968	285456	Hs.683863	NM_182591	HPRD:08228	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_100420	chr8	121951292	121951567	+	28.53091	NA	Intergenic	Intergenic	-127120	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_103693	chr9	71985356	71985685	+	28.53091	NA	intron (NM_004816, intron 2 of 10)	intron (NM_004816, intron 2 of 10)	41279	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_69185	chr3	78448973	78449232	+	28.53091	NA	Intergenic	Intergenic	619507	NM_001145845	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104851	chr9	100149414	100149711	+	28.52042	NA	Intergenic	Intergenic	9411	NR_026847	286359	Hs.132262	NM_182600		LOC286359	-	uncharacterized LOC286359	ncRNA
19-PTNLD28-TUMOR_peak_31516	chr14	81713437	81713739	+	28.51036	NA	Intergenic	L1M2c|LINE|L1	-26013	NM_201595	2957	Hs.592334	NM_015859	HPRD:02748	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA, 1, 19/37kDa	protein-coding
19-PTNLD28-TUMOR_peak_13858	chr10	64024528	64024747	+	28.50123	NA	intron (NM_001282941, intron 1 of 4)	MER5B|DNA|hAT-Charlie	3985	NM_145307	219790	Hs.58559	NM_145307	HPRD:17863	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
19-PTNLD28-TUMOR_peak_61416	chr20	44912171	44912330	+	28.47804	NA	intron (NM_021248, intron 1 of 11)	MIR3|SINE|MIR	24887	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_63776	chr21	44013355	44013601	+	28.47804	NA	Intergenic	Intergenic	-60384	NM_001001571	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_72248	chr3	169914751	169914896	+	28.45588	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-15286	NM_024947	80012	Hs.529592	NM_024947	HPRD:10149	PHC3	EDR3|HPH3	polyhomeotic homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104142	chr9	85389586	85389871	+	28.41863	NA	Intergenic	L1PA2|LINE|L1	288315	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_60951	chr20	36928470	36928699	+	28.41863	NA	Intergenic	MIR|SINE|MIR	-3968	NM_001725	671	Hs.529019	NM_001725	HPRD:00174	BPI	BPIFD1|rBPI	bactericidal/permeability-increasing protein	protein-coding
19-PTNLD28-TUMOR_peak_96178	chr7	148753746	148754047	+	28.40608	NA	Intergenic	HERVL-int|LTR|ERVL	-28114	NM_004911	9601	Hs.93659	NM_004911	HPRD:06501	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_69535	chr3	105542398	105542567	+	28.37823	NA	intron (NM_170662, intron 3 of 18)	intron (NM_170662, intron 3 of 18)	45405	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_6497	chr1	147718581	147719031	+	28.37616	NA	intron (NR_120331, intron 1 of 4)	CpG	536	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
19-PTNLD28-TUMOR_peak_86348	chr6	28852554	28853004	+	28.37616	NA	Intergenic	LTR12C|LTR|ERV1	-11528	NR_104117	414760	Hs.211005	NR_104117		HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_81089	chr5	89369479	89369648	+	28.36263	NA	Intergenic	L1PA2|LINE|L1	-57026	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_101285	chr8	138116639	138116981	+	28.35375	NA	Intergenic	Intergenic	309021	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_105201	chr9	110227802	110228191	+	28.35375	NA	intron (NR_121581, intron 1 of 7)	CpG	870	NR_121581	101928720	Hs.125496	NR_121581		LINC01509	-	long intergenic non-protein coding RNA 1509	ncRNA
19-PTNLD28-TUMOR_peak_26133	chr12	108761330	108761561	+	28.35156	NA	Intergenic	Intergenic	-28351	NM_001142343	1240	Hs.197143	NM_004072	HPRD:03829	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemokine-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_66461	chr3	9542338	9542535	+	28.33734	NA	3' UTR (NM_198560, exon 4 of 4)	3' UTR (NM_198560, exon 4 of 4)	53050	NM_198560	375323	Hs.56782	NM_198560		LHFPL4	-	lipoma HMGIC fusion partner-like 4	protein-coding
19-PTNLD28-TUMOR_peak_42641	chr17	57455991	57456211	+	28.33734	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	12657	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	ncRNA
19-PTNLD28-TUMOR_peak_80019	chr5	56434055	56434274	+	28.33711	NA	Intergenic	Intergenic	-35611	NM_022913	65056	Hs.444279	NM_022913	HPRD:16333	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79161	chr5	17375688	17375893	+	28.33711	NA	Intergenic	Intergenic	11629	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_26753	chr12	121968572	121968789	+	28.32722	NA	intron (NM_001005366, intron 8 of 22)	intron (NM_001005366, intron 8 of 22)	49684	NM_001005366	84678	Hs.524800	NM_032590	HPRD:12362	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine (K)-specific demethylase 2B	protein-coding
19-PTNLD28-TUMOR_peak_42458	chr17	55055248	55055601	+	28.32722	NA	promoter-TSS (NM_021626)	promoter-TSS (NM_021626)	-44	NM_021626	59342	Hs.514950	NM_021626	HPRD:10194	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_63408	chr21	37674262	37674506	+	28.32722	NA	Intergenic	LTR10C|LTR|ERV1	-18103	NM_015358	23515	Hs.421150	NM_015358	HPRD:10316	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_105032	chr9	103701985	103702208	+	28.31405	NA	Intergenic	Intergenic	-88935	NM_207299	54886	Hs.382683	NM_017753	HPRD:17906	LPPR1	PRG-3	lipid phosphate phosphatase-related protein type 1	protein-coding
19-PTNLD28-TUMOR_peak_25988	chr12	106001638	106001958	+	28.31405	NA	Intergenic	HERVL-int|LTR|ERVL	-96183	NR_110108	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11240	chr1	239524909	239525117	+	28.31405	NA	Intergenic	Intergenic	-267360	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	cholinergic receptor, muscarinic 3	protein-coding
19-PTNLD28-TUMOR_peak_82332	chr5	135179843	135180062	+	28.27958	NA	intron (NM_145282, intron 2 of 4)	intron (NM_145282, intron 2 of 4)	9587	NM_145282	153328	Hs.412418	NM_145282	HPRD:14098	SLC25A48	-	solute carrier family 25, member 48	protein-coding
19-PTNLD28-TUMOR_peak_85125	chr6	7041782	7042030	+	28.27958	NA	Intergenic	Intergenic	-65924	NM_001168344	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11237	chr1	239123489	239123851	+	28.27958	NA	Intergenic	Intergenic	-474353	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_79321	chr5	31936040	31936477	+	28.26963	NA	promoter-TSS (NR_036241)	promoter-TSS (NR_036241)	7	NR_036241	100422874		NR_036241	miRBase:MI0015887	MIR4279	-	microRNA 4279	ncRNA
19-PTNLD28-TUMOR_peak_93693	chr7	82163975	82164354	+	28.26963	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-91133	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_60947	chr20	36846137	36846406	+	28.26939	NA	intron (NM_001029864, intron 12 of 13)	L2b|LINE|L2	-42306	NR_104170	149684	Hs.628250	NR_104170	ENSG00000101425	LOC149684	-	uncharacterized LOC149684	ncRNA
19-PTNLD28-TUMOR_peak_108099	chrX	45374832	45375120	+	28.23657	NA	intron (NR_104644, intron 2 of 3)	intron (NR_104644, intron 2 of 3)	10343	NR_104644	101927528	Hs.550772	NR_104644	ENSG00000229563	LINC01204	-	long intergenic non-protein coding RNA 1204	ncRNA
19-PTNLD28-TUMOR_peak_44533	chr18	10086463	10086765	+	28.23657	NA	Intergenic	Intergenic	172659	NM_003574	9218	Hs.165195	NM_003574	HPRD:09299	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa	protein-coding
19-PTNLD28-TUMOR_peak_52438	chr2	43722945	43723293	+	28.23657	NA	intron (NM_022065, intron 25 of 37)	intron (NM_022065, intron 25 of 37)	99994	NM_001083953	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_99524	chr8	94898080	94898340	+	28.21909	NA	Intergenic	Intergenic	30137	NR_039602	100616169		NR_039602	miRBase:MI0003840	MIR378D2	-	microRNA 378d-2	ncRNA
19-PTNLD28-TUMOR_peak_4864	chr1	92230963	92231162	+	28.21909	NA	intron (NM_001195684, intron 4 of 17)	intron (NM_001195684, intron 4 of 17)	120774	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_74588	chr4	14843520	14843852	+	28.21909	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	159983	NR_038857	441009	Hs.535004	NR_038857	ENSG00000247624	CPEB2-AS1	-	CPEB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_87115	chr6	36630849	36631015	+	28.21437	NA	Intergenic	Intergenic	11971	NR_109836	101154753	Hs.741557	NR_109836		PANDAR	PANDA	promoter of CDKN1A antisense DNA damage activated RNA	ncRNA
19-PTNLD28-TUMOR_peak_101333	chr8	139804774	139804986	+	28.20671	NA	intron (NM_152888, intron 12 of 64)	intron (NM_152888, intron 12 of 64)	121356	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_56888	chr2	170571850	170572251	+	28.20671	NA	intron (NM_001199290, intron 3 of 5)	HERVL18-int|LTR|ERVL	-18306	NM_144711	151230	Hs.655150	NM_144711	HPRD:11320	KLHL23	DITHP	kelch-like family member 23	protein-coding
19-PTNLD28-TUMOR_peak_70776	chr3	129897737	129897926	+	28.20147	NA	Intergenic	HERVS71-int|LTR|ERV1	-33832	NR_027898	646300	Hs.170475	NR_027898		COL6A4P2	COL6A4	collagen, type VI, alpha 4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_35834	chr16	2710919	2711050	+	28.12930	NA	non-coding (NR_040023, exon 3 of 3)	non-coding (NR_040023, exon 3 of 3)	12456	NR_040023	100507321	Hs.406976	NM_001012731		ERVK13-1	-	endogenous retrovirus group K13, member 1	ncRNA
19-PTNLD28-TUMOR_peak_44925	chr18	21359656	21360248	+	28.10307	NA	intron (NM_198129, intron 11 of 74)	intron (NM_198129, intron 11 of 74)	90390	NM_001127717	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_109221	chrX	114579970	114580177	+	28.10297	NA	Intergenic	Intergenic	55790	NM_016383	51213	Hs.242183	NM_016383	HPRD:06589	LUZP4	CT-28|CT-8|CT28|HOM-TES-85	leucine zipper protein 4	protein-coding
19-PTNLD28-TUMOR_peak_43247	chr17	71088748	71089134	+	28.10075	NA	promoter-TSS (NM_001159770)	promoter-TSS (NM_001159770)	-88	NM_001159770	201266	Hs.221127	NM_139177	HPRD:15383	SLC39A11	C17orf26|ZIP11	solute carrier family 39, member 11	protein-coding
19-PTNLD28-TUMOR_peak_104300	chr9	89130190	89130400	+	28.08451	NA	Intergenic	Intergenic	-160893	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_89316	chr6	122931456	122931669	+	28.08451	NA	5' UTR (NM_032471, exon 1 of 4)	5' UTR (NM_032471, exon 1 of 4)	185	NM_181795	5570	Hs.741340	NM_032471	HPRD:06075	PKIB	PRKACN2	protein kinase (cAMP-dependent, catalytic) inhibitor beta	protein-coding
19-PTNLD28-TUMOR_peak_26823	chr12	122615670	122615849	+	28.08451	NA	intron (NM_014938, intron 7 of 16)	intron (NM_014938, intron 7 of 16)	-36507	NM_152759	254050	Hs.374856	NM_152759	HPRD:14601	LRRC43	-	leucine rich repeat containing 43	protein-coding
19-PTNLD28-TUMOR_peak_72856	chr3	185276274	185276522	+	28.08229	NA	Intergenic	Intergenic	-6029	NM_139248	200879	Hs.68864	NM_139248	HPRD:07392	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase, member H	protein-coding
19-PTNLD28-TUMOR_peak_59210	chr2	240680154	240680566	+	28.06678	NA	Intergenic	L1MD1|LINE|L1	-4194	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_15804	chr10	116619082	116619297	+	28.06649	NA	intron (NM_020940, intron 14 of 16)	intron (NM_020940, intron 14 of 16)	37686	NM_020940	57700	Hs.192619	NM_020940	HPRD:17219	FAM160B1	KIAA1600|bA106M7.3	family with sequence similarity 160, member B1	protein-coding
19-PTNLD28-TUMOR_peak_71222	chr3	139146493	139146705	+	28.05717	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	37954	NR_121609	100507291	Hs.97661	NR_121608		LOC100507291	-	uncharacterized LOC100507291	ncRNA
19-PTNLD28-TUMOR_peak_16642	chr11	2218509	2218677	+	28.05717	NA	Intergenic	Intergenic	24300	NR_039834	100616126		NR_039834	miRBase:MI0017318	MIR4686	-	microRNA 4686	ncRNA
19-PTNLD28-TUMOR_peak_81606	chr5	112680986	112681215	+	27.98802	NA	intron (NM_001085377, intron 2 of 18)	L1MA2|LINE|L1	-50488	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_25200	chr12	69684757	69685036	+	27.98802	NA	Intergenic	Intergenic	-17898	NR_031692	100302182		NR_031692		MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
19-PTNLD28-TUMOR_peak_71624	chr3	149230166	149230318	+	27.98802	NA	Intergenic	Intergenic	37874	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_107871	chrX	30301621	30301919	+	27.98802	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	25725	NM_000475	190	Hs.268490	NM_000475		NR0B1	AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2	nuclear receptor subfamily 0, group B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_19162	chr11	64375567	64375740	+	27.98802	NA	intron (NM_138734, intron 6 of 6)	CpG	17371	NM_001276327	116085	Hs.174424	NM_144585	HPRD:06160	SLC22A12	OAT4L|RST|URAT1	solute carrier family 22 (organic anion/urate transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_106335	chr9	131930447	131930590	+	27.97634	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	10022	NM_203434	389792	Hs.529857	NM_203434	HPRD:17128	IER5L	bA247A12.2	immediate early response 5-like	protein-coding
19-PTNLD28-TUMOR_peak_6032	chr1	120814089	120814305	+	27.96360	NA	Intergenic	MamRep1161|DNA|TcMar	-24808	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_93847	chr7	89782163	89782324	+	27.94469	NA	intron (NR_110029, intron 2 of 2)	SVA_D|Other|Other	-1446	NM_012449	26872	Hs.61635	NM_012449	HPRD:05106	STEAP1	PRSS24|STEAP	six transmembrane epithelial antigen of the prostate 1	protein-coding
19-PTNLD28-TUMOR_peak_48676	chr19	35925388	35925843	+	27.94469	NA	Intergenic	Intergenic	-15002	NM_005306	2867	Hs.248056	NM_005306	HPRD:04824	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_100095	chr8	110619300	110619479	+	27.93871	NA	intron (NM_001099754, intron 3 of 6)	intron (NM_001099754, intron 3 of 6)	36030	NM_001099756	55638	Hs.390738	NM_017786	HPRD:07902	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
19-PTNLD28-TUMOR_peak_23041	chr12	11450609	11450883	+	27.93298	NA	Intergenic	L1PA2|LINE|L1	12623	NM_001261399	5545	Hs.528651	NM_002723	HPRD:01624	PRB4	Po	proline-rich protein BstNI subfamily 4	protein-coding
19-PTNLD28-TUMOR_peak_79353	chr5	32537604	32537823	+	27.93225	NA	Intergenic	L2c|LINE|L2	-47892	NM_006713	10923	Hs.229641	NM_006713	HPRD:02737	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_15847	chr10	118706734	118706907	+	27.93225	NA	intron (NM_001258300, intron 8 of 17)	intron (NM_001258300, intron 8 of 17)	58268	NM_001127211	57698	Hs.501140	NM_018330	HPRD:11155	KIAA1598	-	KIAA1598	protein-coding
19-PTNLD28-TUMOR_peak_34175	chr15	68758542	68758874	+	27.93225	NA	Intergenic	Intergenic	-34216	NM_001004439	22801	Hs.436416	NM_012211	HPRD:05310	ITGA11	HsT18964	integrin, alpha 11	protein-coding
19-PTNLD28-TUMOR_peak_33490	chr15	48313668	48313814	+	27.93225	NA	Intergenic	Intergenic	-99428	NM_205850	283652	Hs.710240	NM_205850	HPRD:18055	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_31564	chr14	85881756	85881954	+	27.93225	NA	intron (NR_102737, intron 2 of 2)	L2a|LINE|L2	21596	NR_102738	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_106083	chr9	128055496	128055682	+	27.93225	NA	intron (NM_001282679, intron 2 of 27)	L2a|LINE|L2	-5580	NM_001282681	26130	Hs.495134	NM_015635	HPRD:10886	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_74422	chr4	9201451	9201579	+	27.93225	NA	Intergenic	L1PBa|LINE|L1	-10868	NM_001256852	100287144	Hs.741130	NM_001256852	ENSG00000231396	USP17L10	-	ubiquitin specific peptidase 17-like family member 10	protein-coding
19-PTNLD28-TUMOR_peak_31799	chr14	93785424	93785574	+	27.93225	NA	intron (NM_001002860, intron 1 of 10)	AluJo|SINE|Alu	13939	NM_001002860	55727	Hs.525549	NM_018167	HPRD:12541	BTBD7	FUP1	BTB (POZ) domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_11379	chr1	244185694	244185901	+	27.93225	NA	intron (NR_033883, intron 6 of 11)	FRAM|SINE|Alu	-26444	NM_001278196	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_81408	chr5	103854375	103854517	+	27.93225	NA	Intergenic	L1HS|LINE|L1	-580729	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_88899	chr6	101081068	101081277	+	27.93225	NA	intron (NM_006828, intron 25 of 41)	MER44C|DNA|TcMar-Tigger	-169621	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_59787	chr20	10573613	10573797	+	27.93225	NA	intron (NM_001009608, intron 4 of 7)	intron (NM_001009608, intron 4 of 7)	56638	NR_106930	102465525		NR_106930		MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
19-PTNLD28-TUMOR_peak_33860	chr15	62368191	62368408	+	27.93225	NA	Intergenic	L5|LINE|RTE	9123	NM_207322	145741	Hs.202656	NM_207322	HPRD:14830	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_24089	chr12	49284573	49284752	+	27.93225	NA	Intergenic	Intergenic	-13231	NM_033124	85478	Hs.512805	NM_033124	HPRD:14867	CCDC65	CILD27|FAP250|NYD-SP28	coiled-coil domain containing 65	protein-coding
19-PTNLD28-TUMOR_peak_5260	chr1	106810799	106810978	+	27.93225	NA	Intergenic	Intergenic	-788379	NM_018137	55170	Hs.26006	NM_018137	HPRD:10505	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_75349	chr4	55031689	55031876	+	27.93225	NA	Intergenic	L2c|LINE|L2	-63482	NM_006206	5156	Hs.74615	NM_006206	HPRD:01429	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	platelet-derived growth factor receptor, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_2458	chr1	37019498	37019725	+	27.93225	NA	Intergenic	Intergenic	-70696	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_30494	chr14	57153326	57153505	+	27.93225	NA	Intergenic	Intergenic	106904	NM_017799	54916	Hs.497253	NM_017799	HPRD:12624	TMEM260	C14orf101	transmembrane protein 260	protein-coding
19-PTNLD28-TUMOR_peak_81786	chr5	121751339	121751489	+	27.93225	NA	intron (NM_001242935, intron 3 of 9)	intron (NM_001242935, intron 3 of 9)	63368	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
19-PTNLD28-TUMOR_peak_12268	chr10	19943657	19943867	+	27.93225	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	73717	NR_120646	101928834	Hs.676482	NR_120646	ENSG00000233968	LOC101928834	-	uncharacterized LOC101928834	ncRNA
19-PTNLD28-TUMOR_peak_23567	chr12	29317799	29317953	+	27.93225	NA	intron (NM_001271783, intron 1 of 11)	intron (NM_001271783, intron 1 of 11)	15940	NM_001271783	55711	Hs.728955	NM_018099	HPRD:14723	FAR2	MLSTD1|SDR10E2	fatty acyl CoA reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_23256	chr12	15782078	15782374	+	27.93225	NA	intron (NM_004447, intron 18 of 20)	intron (NM_004447, intron 18 of 20)	82948	NM_030668	5800	Hs.160871	NM_002848	HPRD:02784	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
19-PTNLD28-TUMOR_peak_40484	chr17	18694803	18694984	+	27.93225	NA	intron (NM_016078, intron 3 of 6)	MER20|DNA|hAT-Charlie	10311	NM_016078	51030	Hs.87295	NM_016078	HPRD:13293	TVP23B	FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_18781	chr11	59683255	59683360	+	27.93225	NA	Intergenic	AluY|SINE|Alu	-49266	NM_001062	6947	Hs.2012	NM_001062	HPRD:01795	TCN1	HC|TC-1|TC1|TCI	transcobalamin I (vitamin B12 binding protein, R binder family)	protein-coding
19-PTNLD28-TUMOR_peak_25390	chr12	77113953	77114186	+	27.93225	NA	Intergenic	L1M1|LINE|L1	-43785	NM_015336	23390	Hs.4014	NM_015336	HPRD:09697	ZDHHC17	HIP14|HIP3|HYPH	zinc finger, DHHC-type containing 17	protein-coding
19-PTNLD28-TUMOR_peak_12899	chr10	34869687	34869886	+	27.93225	NA	intron (NM_001184791, intron 2 of 20)	intron (NM_001184791, intron 2 of 20)	234467	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_30077	chr14	45272563	45272732	+	27.93225	NA	Intergenic	Intergenic	-93860	NM_001017923	122525	Hs.82098	NM_001017923	HPRD:18544	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
19-PTNLD28-TUMOR_peak_65253	chr22	35363047	35363228	+	27.93225	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-98993	NM_001008494	91464	Hs.567637	NM_001008494	HPRD:17957	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_68470	chr3	55364465	55364697	+	27.93225	NA	Intergenic	Intergenic	150845	NM_001256105	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_992	chr1	15678951	15679198	+	27.93225	NA	intron (NM_052929, intron 18 of 30)	intron (NM_052929, intron 18 of 30)	-57317	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_53648	chr2	77780192	77780357	+	27.93225	NA	Intergenic	Intergenic	-30772	NM_001134745	80059	Hs.285782	NM_024993	HPRD:11288	LRRTM4	-	leucine rich repeat transmembrane neuronal 4	protein-coding
19-PTNLD28-TUMOR_peak_108984	chrX	101054443	101054640	+	27.93225	NA	Intergenic	Intergenic	58008	NR_028089	55998	Hs.307077	NM_032946	HPRD:02263	NXF5	-	nuclear RNA export factor 5	protein-coding
19-PTNLD28-TUMOR_peak_21793	chr11	123178780	123179040	+	27.93225	NA	Intergenic	Intergenic	73310	NR_039714	100616319		NR_039714	miRBase:MI0016855	MIR4493	-	microRNA 4493	ncRNA
19-PTNLD28-TUMOR_peak_67597	chr3	39166833	39167025	+	27.92532	NA	exon (NM_145755, exon 11 of 29)	exon (NM_145755, exon 11 of 29)	-12768	NR_106880	102466743		NR_106880		MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
19-PTNLD28-TUMOR_peak_108315	chrX	49825225	49825355	+	27.89202	NA	intron (NM_001127898, intron 4 of 14)	L1PA2|LINE|L1	-6925	NM_000084	1184	Hs.166486	NM_000084	HPRD:02053	CLCN5	CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride channel, voltage-sensitive 5	protein-coding
19-PTNLD28-TUMOR_peak_34750	chr15	79973052	79973391	+	27.89202	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	216118	NR_037654	10588	Hs.194294	NM_006441		MTHFS	HsT19268	5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)	protein-coding
19-PTNLD28-TUMOR_peak_97130	chr8	10657380	10657583	+	27.88143	NA	intron (NM_001284356, intron 5 of 5)	MIRb|SINE|MIR	25472	NR_031711	100302166		NR_031711		MIR1322	MIRN1322|hsa-mir-1322	microRNA 1322	ncRNA
19-PTNLD28-TUMOR_peak_50196	chr19	53757769	53758252	+	27.88143	NA	intron (NM_182609, intron 1 of 4)	CpG	101	NM_182609	342926	Hs.20506	NM_182609	HPRD:14658	ZNF677	-	zinc finger protein 677	protein-coding
19-PTNLD28-TUMOR_peak_103719	chr9	72421139	72421383	+	27.88143	NA	Intergenic	MER66D|LTR|ERV1	14394	NR_038833	494558	Hs.130722	NR_038833		C9orf135-AS1	-	C9orf135 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_84658	chr6	411530	411714	+	27.87435	NA	TTS (NM_002460)	TTS (NM_002460)	19883	NM_002460	3662	Hs.401013	NM_002460	HPRD:03543	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
19-PTNLD28-TUMOR_peak_90986	chr7	3320121	3320378	+	27.87435	NA	Intergenic	Intergenic	-20831	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_32159	chr14	103261479	103261691	+	27.87435	NA	intron (NM_003300, intron 1 of 10)	intron (NM_003300, intron 1 of 10)	17769	NM_145725	7187	Hs.510528	NM_003300	HPRD:03539	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
19-PTNLD28-TUMOR_peak_82845	chr5	142201672	142201842	+	27.85483	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	46718	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62304	chr20	56197697	56197948	+	27.84454	NA	Intergenic	Intergenic	-2190	NM_001160418	81030	Hs.302123	NM_030776	HPRD:09484	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_106469	chr9	133985501	133985682	+	27.83628	NA	intron (NM_001185095, intron 3 of 6)	AluJb|SINE|Alu	13728	NM_001185096	83543	Hs.4944	NM_031426	HPRD:12967	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_107263	chrUn_gl000227	30729	30884	+	27.80155	NA	Intergenic	Intergenic	43439	NR_109817	441123		NR_109817	ENSG00000170590	LINC00266-3	C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2	long intergenic non-protein coding RNA 266-3	ncRNA
19-PTNLD28-TUMOR_peak_49072	chr19	40909990	40910307	+	27.80155	NA	intron (NM_181882, intron 4 of 6)	CpG	9123	NM_181882	57716	Hs.205457	NM_020956	HPRD:05758	PRX	CMT4F	periaxin	protein-coding
19-PTNLD28-TUMOR_peak_79181	chr5	17805560	17805890	+	27.79862	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-418306	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_35702	chr16	1187670	1187977	+	27.79419	NA	Intergenic	L1ME2|LINE|L1	-15418	NM_021098	8912	Hs.459642	NM_021098	HPRD:07442	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding
19-PTNLD28-TUMOR_peak_73107	chr3	188951095	188951298	+	27.78917	NA	intron (NM_198485, intron 3 of 5)	intron (NM_198485, intron 3 of 5)	7187	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_95757	chr7	139156593	139156959	+	27.78489	NA	intron (NM_198508, intron 3 of 4)	intron (NM_198508, intron 3 of 4)	11681	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	killer cell lectin-like receptor subfamily G, member 2	protein-coding
19-PTNLD28-TUMOR_peak_59415	chr20	986385	986527	+	27.77782	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-3549	NM_001029871	343637	Hs.444980	NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
19-PTNLD28-TUMOR_peak_9043	chr1	196847170	196847419	+	27.77782	NA	Intergenic	CpG	-9850	NM_006684	10877	Hs.710100	NM_006684	HPRD:05627	CFHR4	CFHL4|FHR-4|FHR4	complement factor H-related 4	protein-coding
19-PTNLD28-TUMOR_peak_45094	chr18	28855795	28855973	+	27.76182	NA	Intergenic	Intergenic	-42168	NM_001942	1828	Hs.2633	NM_001942	HPRD:00515	DSG1	CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1	desmoglein 1	protein-coding
19-PTNLD28-TUMOR_peak_86083	chr6	26066210	26066437	+	27.76182	NA	Intergenic	Intergenic	-9624	NM_005319	3006	Hs.7644	NM_005319	HPRD:07514	HIST1H1C	H1.2|H1C|H1F2|H1s-1	histone cluster 1, H1c	protein-coding
19-PTNLD28-TUMOR_peak_21704	chr11	121560097	121560309	+	27.76182	NA	Intergenic	Intergenic	237291	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_82322	chr5	134914438	134914844	+	27.75067	NA	5' UTR (NM_004887, exon 1 of 4)	5' UTR (NM_004887, exon 1 of 4)	328	NM_004887	9547	Hs.483444	NM_004887	HPRD:16049	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	chemokine (C-X-C motif) ligand 14	protein-coding
19-PTNLD28-TUMOR_peak_86479	chr6	30558845	30559134	+	27.75067	NA	3' UTR (NM_001025091, exon 25 of 25).2	3' UTR (NM_001025091, exon 25 of 25).2	6880	NR_030615	100126314		NR_030615		MIR877	MIRN877|hsa-mir-877|miRNA877	microRNA 877	ncRNA
19-PTNLD28-TUMOR_peak_75449	chr4	57919686	57920010	+	27.74258	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-56080	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15979	chr10	122610551	122611061	+	27.71495	NA	promoter-TSS (NR_033850)	promoter-TSS (NR_033850)	-115	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78373	chr4	186603524	186603703	+	27.71259	NA	intron (NM_021069, intron 2 of 20)	intron (NM_021069, intron 2 of 20)	-25490	NM_001145674	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83658	chr5	160918817	160919020	+	27.71259	NA	intron (NM_000813, intron 4 of 9)	intron (NM_000813, intron 4 of 9)	56212	NM_021911	2561	Hs.303527	NM_000813	HPRD:02578	GABRB2	-	gamma-aminobutyric acid (GABA) A receptor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_102484	chr9	22041997	22042137	+	27.71259	NA	intron (NR_003529, intron 3 of 18)	intron (NR_003529, intron 3 of 18)	-32755	NM_078487	1030	Hs.72901	NM_004936	HPRD:02696	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_26352	chr12	112251031	112251186	+	27.71259	NA	Intergenic	Intergenic	13470	NR_106819	102465456		NR_106819		MIR6761	hsa-mir-6761	microRNA 6761	ncRNA
19-PTNLD28-TUMOR_peak_46956	chr19	7309847	7310158	+	27.70501	NA	Intergenic	Intergenic	-15991	NM_000208	3643	Hs.465744	NM_000208	HPRD:00975	INSR	CD220|HHF5	insulin receptor	protein-coding
19-PTNLD28-TUMOR_peak_34984	chr15	85278237	85278650	+	27.70501	NA	Intergenic	Intergenic	-13375	NM_014630	9640	Hs.79347	NM_014630	HPRD:10339	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
19-PTNLD28-TUMOR_peak_37068	chr16	28814008	28814284	+	27.69468	NA	Intergenic	Intergenic	-20223	NM_148416	11273	Hs.460499	NM_007245	HPRD:06394	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2-like	protein-coding
19-PTNLD28-TUMOR_peak_50129	chr19	52956623	52956974	+	27.68705	NA	promoter-TSS (NM_001099694)	promoter-TSS (NM_001099694)	-31	NM_001099694	147660	Hs.157287	NM_152472	HPRD:15857	ZNF578	-	zinc finger protein 578	protein-coding
19-PTNLD28-TUMOR_peak_38547	chr16	70450735	70450927	+	27.68705	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	22160	NM_006927	6483	Hs.368611	NM_006927	HPRD:06220	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_45221	chr18	33518599	33518829	+	27.67814	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	-33825	NR_029616	406963		NR_029616	miRBase:MI0000274	MIR187	MIRN187|miR-187|miRNA187	microRNA 187	ncRNA
19-PTNLD28-TUMOR_peak_21598	chr11	119537225	119537411	+	27.65009	NA	intron (NM_002855, intron 5 of 5)	intron (NM_002855, intron 5 of 5)	62117	NM_203286	5818	Hs.334846	NM_002855	HPRD:07200	PVRL1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
19-PTNLD28-TUMOR_peak_99695	chr8	101030147	101030441	+	27.65009	NA	intron (NM_015668, intron 14 of 27)	intron (NM_015668, intron 14 of 27)	87560	NM_001286693	26166	Hs.120021	NM_015668	HPRD:13155	RGS22	CT145|PRTD-NY2	regulator of G-protein signaling 22	protein-coding
19-PTNLD28-TUMOR_peak_31848	chr14	95076976	95077291	+	27.65009	NA	Intergenic	MIRb|SINE|MIR	-1581	NM_001085	12	Hs.534293	NM_001085	HPRD:00120	SERPINA3	AACT|ACT|GIG25	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3	protein-coding
19-PTNLD28-TUMOR_peak_87841	chr6	47065210	47065518	+	27.65009	NA	Intergenic	Intergenic	-55282	NM_153840	266977	Hs.733762	NM_025048	HPRD:08661	GPR110	KPG_012|PGR19|hGPCR36	G protein-coupled receptor 110	protein-coding
19-PTNLD28-TUMOR_peak_102908	chr9	35938867	35939018	+	27.62153	NA	Intergenic	Intergenic	19209	NM_019897	56656	Hs.553540	NM_019897	HPRD:17704	OR2S2	OR37A|OST715	olfactory receptor, family 2, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_61297	chr20	43733504	43733767	+	27.61797	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-3882	NM_002251	3787	Hs.117780	NM_002251	HPRD:04214	KCNS1	KV9.1	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_73537	chr3	195716180	195716368	+	27.61719	NA	intron (NR_003264, intron 1 of 16)	intron (NR_003264, intron 1 of 16)	876	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_23386	chr12	22589955	22590467	+	27.61195	NA	Intergenic	L1PB1|LINE|L1	-102563	NM_003034	6489	Hs.408614	NM_003034	HPRD:03078	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_5060	chr1	95507082	95507374	+	27.60664	NA	intron (NM_144988, intron 2 of 3)	intron (NM_144988, intron 2 of 3)	31279	NM_144988	199857	Hs.408927	NM_144988		ALG14	-	ALG14, UDP-N-acetylglucosaminyltransferase subunit	protein-coding
19-PTNLD28-TUMOR_peak_70466	chr3	125917200	125917371	+	27.59037	NA	intron (NR_046383, intron 1 of 1)	intron (NR_046383, intron 1 of 1)	-17256	NM_001270364	10840	Hs.434435	NM_012190	HPRD:02594	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family, member L1	protein-coding
19-PTNLD28-TUMOR_peak_83945	chr5	171720440	171720753	+	27.59037	NA	Intergenic	LTR41|LTR|ERVL	-9801	NM_152277	92181	Hs.131570	NM_152277	HPRD:13118	UBTD2	DCUBP	ubiquitin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_42951	chr17	63227881	63228068	+	27.59037	NA	Intergenic	Intergenic	94518	NM_001081955	8787	Hs.664380	NM_003835	HPRD:04962	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
19-PTNLD28-TUMOR_peak_62647	chr20	62642241	62642482	+	27.58588	NA	intron (NM_012469, intron 10 of 20)	intron (NM_012469, intron 10 of 20)	-23336	NR_027686	284739	Hs.97840	NM_207349	HPRD:17341	LINC00176	NCRNA00176|PRR17	long intergenic non-protein coding RNA 176	ncRNA
19-PTNLD28-TUMOR_peak_64823	chr22	25516228	25516489	+	27.58588	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	-7699	NR_038941	100128531	Hs.662126	NR_038941	ENSG00000203280	LOC100128531	-	uncharacterized LOC100128531	ncRNA
19-PTNLD28-TUMOR_peak_34452	chr15	74280456	74280666	+	27.56594	NA	intron (NM_001256676, intron 4 of 6)	intron (NM_001256676, intron 4 of 6)	4128	NM_001256675	9399	Hs.194816	NM_004809	HPRD:16314	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_32807	chr15	30465592	30465855	+	27.55977	NA	Intergenic	Intergenic	-22516	NR_026771	26082	Hs.652128	NR_026771	ENSG00000225930	DKFZP434L187	-	uncharacterized LOC26082	ncRNA
19-PTNLD28-TUMOR_peak_11853	chr10	6092750	6092991	+	27.55065	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	11463	NM_000417	3559	Hs.231367	NM_000417	HPRD:00986	IL2RA	CD25|IDDM10|IL2R|TCGFR|p55	interleukin 2 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_58471	chr2	220080903	220081176	+	27.54439	NA	intron (NM_005689, intron 4 of 18)	intron (NM_005689, intron 4 of 18)	2673	NM_005689	10058	Hs.107911	NM_005689	HPRD:09261	ABCB6	ABC|ABC14|DUH3|LAN|MCOPCB7|MTABC3|PRP|umat	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding
19-PTNLD28-TUMOR_peak_102648	chr9	32627598	32627844	+	27.53974	NA	Intergenic	Intergenic	7946	NM_153809	138474	Hs.591086	NM_153809	HPRD:09696	TAF1L	TAF2A2	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_17760	chr11	28643523	28643713	+	27.53974	NA	Intergenic	Intergenic	-144523	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_56428	chr2	156940165	156940482	+	27.53664	NA	intron (NR_110250, intron 1 of 3)	L1PB1|LINE|L1	171120	NR_110249	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_107987	chrX	39992030	39992248	+	27.53664	NA	intron (NM_001123384, intron 1 of 13)	MER5A|DNA|hAT-Charlie	-35420	NM_001123385	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_73341	chr3	193876712	193876941	+	27.53664	NA	Intergenic	Intergenic	22895	NM_005524	3280	Hs.250666	NM_005524	HPRD:00770	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_48352	chr19	28463369	28463527	+	27.51974	NA	Intergenic	L2a|LINE|L2	-178600	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
19-PTNLD28-TUMOR_peak_77395	chr4	144750384	144750684	+	27.51974	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	76182	NM_002102	2996	Hs.654368	NM_002102	HPRD:00723	GYPE	GPE|MNS|MiIX	glycophorin E (MNS blood group)	protein-coding
19-PTNLD28-TUMOR_peak_2117	chr1	32678100	32678311	+	27.50006	NA	exon (NM_001099434, exon 5 of 9)	exon (NM_001099434, exon 5 of 9)	3510	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_83141	chr5	149185487	149185639	+	27.48544	NA	intron (NM_001172699, intron 1 of 10)	intron (NM_001172699, intron 1 of 10)	34060	NM_001172699	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_84634	chr6	104862	105017	+	27.47791	NA	Intergenic	Intergenic	43220	NR_109817	441123		NR_109817	ENSG00000170590	LINC00266-3	C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2	long intergenic non-protein coding RNA 266-3	ncRNA
19-PTNLD28-TUMOR_peak_49121	chr19	41349684	41349903	+	27.46006	NA	exon (NM_000762, exon 9 of 9)	exon (NM_000762, exon 9 of 9)	6559	NM_000762	1548	Hs.250615	NM_000762	HPRD:00420	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450, family 2, subfamily A, polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_58266	chr2	216565321	216565915	+	27.45168	NA	intron (NR_037195, intron 5 of 9)	intron (NR_037195, intron 5 of 9)	142641	NR_037195	646324	Hs.655713	NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
19-PTNLD28-TUMOR_peak_73443	chr3	194814876	194815178	+	27.43996	NA	promoter-TSS (NR_104188)	promoter-TSS (NR_104188)	-290	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99129	chr8	70526793	70527228	+	27.42817	NA	intron (NM_015170, intron 13 of 22)	intron (NM_015170, intron 13 of 22)	121982	NM_001128205	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_61958	chr20	50656339	50656557	+	27.42817	NA	Intergenic	Intergenic	152076	NM_199426	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_32653	chr15	26178985	26179308	+	27.42817	NA	intron (NR_040082, intron 1 of 4)	intron (NR_040082, intron 1 of 4)	31639	NR_040082	100128714	Hs.587854	NR_040082	ENSG00000206187	LOC100128714	-	uncharacterized LOC100128714	ncRNA
19-PTNLD28-TUMOR_peak_11236	chr1	239062192	239062431	+	27.38561	NA	Intergenic	MLT2A2|LTR|ERVL	-412994	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_97162	chr8	11331708	11331957	+	27.38269	NA	Intergenic	Intergenic	-7556	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_17638	chr11	20631691	20631920	+	27.38198	NA	intron (NM_004211, intron 5 of 15)	intron (NM_004211, intron 5 of 15)	10859	NM_004211	9152	Hs.136557	NM_004211		SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 (neurotransmitter transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_62415	chr20	58090779	58090940	+	27.36774	NA	Intergenic	Intergenic	-61705	NM_001199505	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_56631	chr2	161439402	161439556	+	27.33679	NA	Intergenic	Intergenic	-89161	NM_002897	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_6942	chr1	153328076	153328235	+	27.32357	NA	Intergenic	Intergenic	-2175	NM_002965	6280	Hs.112405	NM_002965	HPRD:00472	S100A9	60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14	S100 calcium binding protein A9	protein-coding
19-PTNLD28-TUMOR_peak_83319	chr5	152038923	152039412	+	27.32196	NA	intron (NR_109877, intron 4 of 4)	L1PA2|LINE|L1	-254327	NM_020167	56923	Hs.731911	NM_020167	HPRD:12003	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_5843	chr1	117396348	117396542	+	27.32196	NA	Intergenic	Intergenic	-56244	NM_020440	5738	Hs.418093	NM_020440	HPRD:03124	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_59652	chr20	5059211	5059421	+	27.32196	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	34417	NM_014145	29058	Hs.472024	NM_014145	HPRD:12762	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
19-PTNLD28-TUMOR_peak_45402	chr18	42117623	42117813	+	27.32196	NA	Intergenic	Intergenic	-6056	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_21712	chr11	121956027	121956283	+	27.32196	NA	Intergenic	Intergenic	14397	NR_029671	406911		NR_029671	miRBase:MI0000446	MIR125B1	MIRN125B1	microRNA 125b-1	ncRNA
19-PTNLD28-TUMOR_peak_21256	chr11	113552765	113553113	+	27.30441	NA	Intergenic	Intergenic	24156	NR_110047	80975	Hs.46720	NM_030770	HPRD:05995	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
19-PTNLD28-TUMOR_peak_4222	chr1	68166426	68166719	+	27.30441	NA	TTS (NM_018841)	TTS (NM_018841)	15712	NM_001924	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_31341	chr14	75925816	75926188	+	27.30441	NA	intron (NM_130469, intron 2 of 3)	intron (NM_130469, intron 2 of 3)	27165	NM_001135049	122953	Hs.196482	NM_130469	HPRD:16360	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
19-PTNLD28-TUMOR_peak_99867	chr8	103704954	103705211	+	27.28702	NA	Intergenic	Intergenic	-36952	NM_005655	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_62809	chr21	16438017	16438210	+	27.28602	NA	promoter-TSS (NM_003489)	promoter-TSS (NM_003489)	-987	NM_003489	8204	Hs.155017	NM_003489	HPRD:03927	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_19368	chr11	66025767	66026159	+	27.27818	NA	intron (NM_001134774, intron 1 of 14)	CpG	789	NM_022822	64837	Hs.280792	NM_022822	HPRD:13917	KLC2	-	kinesin light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_99188	chr8	73391707	73392287	+	27.24639	NA	Intergenic	L1PA2|LINE|L1	-57629	NM_004770	9312	Hs.661102	NM_004770	HPRD:09666	KCNB2	KV2.2	potassium voltage-gated channel, Shab-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_55093	chr2	114057914	114058159	+	27.24639	NA	Intergenic	Intergenic	-21538	NM_003466	7849	Hs.469728	NM_003466	HPRD:01335	PAX8	-	paired box 8	protein-coding
19-PTNLD28-TUMOR_peak_25198	chr12	69550897	69551103	+	27.24639	NA	Intergenic	LTR50|LTR|ERVL	-82317	NM_001300947	11052	Hs.369606	NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_42279	chr17	48860557	48860784	+	27.24639	NA	Intergenic	Intergenic	14659	NR_107026	102466918		NR_107026		MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
19-PTNLD28-TUMOR_peak_96035	chr7	143028589	143028816	+	27.23833	NA	non-coding (NR_046453, exon 10 of 22)	non-coding (NR_046453, exon 10 of 22)	15483	NR_046453	1180	Hs.121483	NM_000083	HPRD:00320	CLCN1	CLC1	chloride channel, voltage-sensitive 1	protein-coding
19-PTNLD28-TUMOR_peak_5827	chr1	117132061	117132248	+	27.23693	NA	intron (NM_001007237, intron 7 of 10)	L2a|LINE|L2	-18439	NM_001144822	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_92531	chr7	50581343	50581510	+	27.23112	NA	intron (NM_001242889, intron 4 of 12)	L1PB1|LINE|L1	-18031	NR_033845	100129427	Hs.680434	NR_033845	ENSG00000226122	DDC-AS1	-	DDC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18213	chr11	43890625	43890830	+	27.23112	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-11630	NM_139178	221120	Hs.720708	NM_139178	HPRD:16793	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1	alkB, alkylation repair homolog 3 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_41421	chr17	39171834	39171998	+	27.23112	NA	Intergenic	Intergenic	-6550	NM_031958	83896	Hs.307027	NM_031958	HPRD:13937	KRTAP3-1	KAP3.1|KRTAP3.1	keratin associated protein 3-1	protein-coding
19-PTNLD28-TUMOR_peak_81767	chr5	121061218	121061438	+	27.23112	NA	Intergenic	L1PA8|LINE|L1	-126322	NM_177478	94033	Hs.105324	NM_177478	HPRD:12316	FTMT	MTF	ferritin mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_28033	chr13	43727673	43727870	+	27.23112	NA	intron (NR_047013, intron 1 of 2)	intron (NR_047013, intron 1 of 2)	40470	NR_047013	100874159	Hs.633241	NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
19-PTNLD28-TUMOR_peak_93024	chr7	68445480	68445719	+	27.22740	NA	Intergenic	LTR8|LTR|ERV1	616882	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_52063	chr2	33700851	33701741	+	27.22429	NA	promoter-TSS (NM_001139488)	promoter-TSS (NM_001139488)	-25	NM_001139488	25780	Hs.143674	NM_015376	HPRD:15213	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_35914	chr16	3208512	3209248	+	27.21939	NA	Intergenic	CpG	23746	NM_001134655	7760	Hs.115284	NM_004220	HPRD:12224	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_5113	chr1	98675710	98675927	+	27.21477	NA	promoter-TSS (NR_046088)	promoter-TSS (NR_046088)	-449	NR_046088	729987	Hs.683961	NR_046088	ENSG00000226053	LOC729987	-	uncharacterized LOC729987	ncRNA
19-PTNLD28-TUMOR_peak_66304	chr3	5468080	5468305	+	27.21477	NA	Intergenic	Intergenic	-176252	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_9003	chr1	193387642	193387865	+	27.21477	NA	Intergenic	Intergenic	113878	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_95597	chr7	135788903	135789279	+	27.20087	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-126887	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_62716	chr21	10588835	10589167	+	27.20087	NA	Intergenic	Intergenic	401942	NM_001290224	7179	Hs.122986	NM_199259	HPRD:05064	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
19-PTNLD28-TUMOR_peak_40508	chr17	18979834	18979958	+	27.20087	NA	Intergenic	Intergenic	-16630	NM_001291905	388436	Hs.677375	NM_001291905		LOC388436	-	uncharacterized protein ENSP00000382042	protein-coding
19-PTNLD28-TUMOR_peak_30936	chr14	68868072	68868337	+	27.18941	NA	intron (NM_133510, intron 8 of 10)	intron (NM_133510, intron 8 of 10)	392427	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_10778	chr1	230340564	230340935	+	27.17008	NA	intron (NM_001291866, intron 3 of 15)	intron (NM_001291866, intron 3 of 15)	137807	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_31393	chr14	77240013	77240184	+	27.17008	NA	intron (NM_014909, intron 4 of 6)	intron (NM_014909, intron 4 of 6)	11863	NM_014909	22846	Hs.525479	NM_014909	HPRD:12353	VASH1	KIAA1036	vasohibin 1	protein-coding
19-PTNLD28-TUMOR_peak_101742	chr8	145498466	145498686	+	27.16297	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	8029	NM_001080514	642658	Hs.553250	NM_001008271	ENSG00000187786	SCX	SCXA|SCXB|bHLHa48	scleraxis basic helix-loop-helix transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_104456	chr9	91892462	91892636	+	27.15705	NA	Intergenic	L1MA8|LINE|L1	-33564	NM_001827	1164	Hs.83758	NM_001827	HPRD:00300	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_19753	chr11	70601735	70602030	+	27.15705	NA	intron (NM_012309, intron 11 of 22)	intron (NM_012309, intron 11 of 22)	-93937	NR_110766	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_94310	chr7	100076761	100076944	+	27.15103	NA	promoter-TSS (NM_030935)	promoter-TSS (NM_030935)	50	NM_030935	81628	Hs.469798	NM_030935	HPRD:18231	TSC22D4	THG-1|THG1|TILZ2	TSC22 domain family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_18792	chr11	60386262	60386448	+	27.15060	NA	intron (NR_026946, intron 1 of 6)	LTR13|LTR|ERVK	3131	NR_026946	283197	Hs.372650	NM_174939	HPRD:17544	LINC00301	C11orf64|NCRNA00301	long intergenic non-protein coding RNA 301	ncRNA
19-PTNLD28-TUMOR_peak_41969	chr17	45699212	45699426	+	27.15060	NA	3' UTR (NM_006310, exon 23 of 23)	3' UTR (NM_006310, exon 23 of 23)	-27885	NM_002265	3837	Hs.532793	NM_002265		KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin (importin) beta 1	protein-coding
19-PTNLD28-TUMOR_peak_104758	chr9	97787603	97787784	+	27.14190	NA	intron (NM_032823, intron 11 of 14)	intron (NM_032823, intron 11 of 14)	-39939	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_2433	chr1	36751163	36751294	+	27.11395	NA	intron (NM_005119, intron 3 of 11)	intron (NM_005119, intron 3 of 11)	-20766	NM_001162530	79729	Hs.524496	NM_024676	HPRD:08011	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
19-PTNLD28-TUMOR_peak_56677	chr2	162847316	162847508	+	27.11395	NA	Intergenic	Intergenic	83640	NM_001935	1803	Hs.368912	NM_001935	HPRD:02187	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl-peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_98035	chr8	30366740	30367069	+	27.10825	NA	intron (NM_001008712, intron 5 of 6)	intron (NM_001008712, intron 5 of 6)	-123987	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	RBPMS-AS1	-	RBPMS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23764	chr12	38778682	38778990	+	27.10825	NA	Intergenic	L1PB1|LINE|L1	68279	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_45333	chr18	37466192	37466514	+	27.10825	NA	Intergenic	Intergenic	-134394	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	ncRNA
19-PTNLD28-TUMOR_peak_64356	chr22	19767857	19768204	+	27.10825	NA	TTS (NM_080646)	TTS (NM_080646)	23804	NM_080647	6899	Hs.173984	NM_005992	HPRD:09069	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box 1	protein-coding
19-PTNLD28-TUMOR_peak_63917	chr21	45482316	45482719	+	27.10366	NA	intron (NM_003274, intron 6 of 22)	intron (NM_003274, intron 6 of 22)	-44691	NM_005049	5822	Hs.449076	NM_005049	HPRD:03279	PWP2	EHOC-17|PWP2H|UTP1	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_22520	chr12	3150801	3150975	+	27.09689	NA	Intergenic	Intergenic	-35633	NM_001168320	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_101684	chr8	144978055	144978306	+	27.06521	NA	Intergenic	Intergenic	-25548	NM_031308	83481	Hs.200412	NM_031308		EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
19-PTNLD28-TUMOR_peak_50237	chr19	54352485	54352809	+	27.05781	NA	Intergenic	L2b|LINE|L2	-16191	NM_001290193	91663	Hs.380906	NM_138373	HPRD:14792	MYADM	SB135	myeloid-associated differentiation marker	protein-coding
19-PTNLD28-TUMOR_peak_25682	chr12	96190089	96190403	+	27.03640	NA	Intergenic	AluJb|SINE|Alu	-5710	NM_021229	59277	Hs.201034	NM_021229	HPRD:10121	NTN4	PRO3091	netrin 4	protein-coding
19-PTNLD28-TUMOR_peak_22457	chr12	1946016	1946524	+	27.03640	NA	TTS (NM_001163926)	TTS (NM_001163926)	16837	NM_001039029	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine-rich repeats and transmembrane domains 2	protein-coding
19-PTNLD28-TUMOR_peak_49322	chr19	45195404	45195628	+	27.03640	NA	Intergenic	Intergenic	-6905	NM_001039213	388551	Hs.456381	NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding
19-PTNLD28-TUMOR_peak_65648	chr22	41128810	41129004	+	27.03640	NA	Intergenic	Intergenic	53725	NM_005297	2847	Hs.248122	NM_005297	HPRD:11874	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin-concentrating hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_17617	chr11	20078087	20078253	+	27.02521	NA	exon (NM_001244963, exon 21 of 40)	exon (NM_001244963, exon 21 of 40)	-7321	NR_046672	100874014	Hs.557916	NR_046672		NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_99373	chr8	85533227	85533453	+	27.02521	NA	intron (NM_001100392, intron 3 of 9)	L1PA3|LINE|L1	-84822	NM_001287244	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_39440	chr16	89323090	89323629	+	27.02521	NA	Intergenic	CpG	39248	NM_182531	197320	Hs.647385	NM_182531	HPRD:08111	ZNF778	-	zinc finger protein 778	protein-coding
19-PTNLD28-TUMOR_peak_58491	chr2	220252074	220252641	+	27.02489	NA	intron (NM_012100, intron 1 of 14)	CpG	305	NM_012100	23549	Hs.258551	NM_012100	HPRD:09924	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_64984	chr22	29504287	29504534	+	27.00303	NA	intron (NM_001039570, intron 3 of 8)	MIRb|SINE|MIR	35344	NM_001039570	83999	Hs.229335	NM_032045	HPRD:11182	KREMEN1	KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_62368	chr20	57234962	57235199	+	27.00303	NA	intron (NM_001001433, intron 2 of 8)	intron (NM_001001433, intron 2 of 8)	8771	NM_003763	8675	Hs.307913	NM_003763	HPRD:04718	STX16	SYN16	syntaxin 16	protein-coding
19-PTNLD28-TUMOR_peak_108850	chrX	82763007	82763306	+	27.00303	NA	promoter-TSS (NM_000307)	promoter-TSS (NM_000307)	-113	NM_000307	5456	Hs.2229	NM_000307	HPRD:02076	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_32963	chr15	33390425	33390599	+	26.99837	NA	intron (NM_001277313, intron 4 of 20)	HAL1|LINE|L1	-30279	NM_001103184	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_79497	chr5	36374480	36374652	+	26.99837	NA	Intergenic	Intergenic	-72555	NM_145000	202151	Hs.729817	NM_145000	HPRD:08064	RANBP3L	-	RAN binding protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_88591	chr6	85836708	85836914	+	26.99837	NA	Intergenic	Intergenic	-322491	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_62145	chr20	53760240	53760429	+	26.99837	NA	Intergenic	Intergenic	-279247	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_42397	chr17	53624735	53624928	+	26.99643	NA	Intergenic	Intergenic	-125490	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_99071	chr8	67940697	67941136	+	26.99643	NA	promoter-TSS (NM_001013626)	promoter-TSS (NM_001013626)	-130	NM_001013626	286187	Hs.583933	NM_001013626	HPRD:14573	PPP1R42	LRRC67|TLLR|dtr	protein phosphatase 1, regulatory subunit 42	protein-coding
19-PTNLD28-TUMOR_peak_52899	chr2	57646260	57646458	+	26.99643	NA	Intergenic	L1PA2|LINE|L1	-488427	NM_001288837	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_30223	chr14	50855378	50855708	+	26.97980	NA	intron (NM_001282236, intron 2 of 8)	AluSg|SINE|Alu	7099	NM_004196	8814	Hs.280881	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
19-PTNLD28-TUMOR_peak_21564	chr11	119067637	119067852	+	26.97980	NA	Intergenic	Intergenic	-1160	NM_001145018	283152	Hs.114777	NM_001033658	HPRD:18762	CCDC153	-	coiled-coil domain containing 153	protein-coding
19-PTNLD28-TUMOR_peak_54120	chr2	92109638	92109813	+	26.97980	NA	Intergenic	L1PA2|LINE|L1	-19434	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_79112	chr5	16593198	16593442	+	26.97980	NA	intron (NM_001034850, intron 1 of 8)	intron (NM_001034850, intron 1 of 8)	-22715	NR_109946	101929524	Hs.734029	NR_109946		LOC101929524	-	uncharacterized LOC101929524	ncRNA
19-PTNLD28-TUMOR_peak_6502	chr1	147727260	147727396	+	26.97507	NA	intron (NR_102404, intron 17 of 18).2	intron (NR_102404, intron 17 of 18).2	-7986	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
19-PTNLD28-TUMOR_peak_60776	chr20	34787612	34787909	+	26.95521	NA	intron (NM_001258330, intron 14 of 20)	intron (NM_001258330, intron 14 of 20)	-36579	NM_015511	25980	Hs.11314	NM_015511	HPRD:12767	AAR2	C20orf4	AAR2 splicing factor homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55465	chr2	122809289	122809778	+	26.95521	NA	Intergenic	L1PA3|LINE|L1	296412	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_73947	chr4	3039099	3039299	+	26.95519	NA	exon (NM_001004056, exon 13 of 15)	exon (NM_001004056, exon 13 of 15)	-37038	NM_002111	3064	Hs.518450	NM_002111	HPRD:00883	HTT	HD|IT15	huntingtin	protein-coding
19-PTNLD28-TUMOR_peak_16059	chr10	124269907	124270260	+	26.91940	NA	intron (NM_002775, intron 7 of 8)	intron (NM_002775, intron 7 of 8)	49042	NM_002775	5654	Hs.501280	NM_002775	HPRD:03725	HTRA1	ARMD7|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_64418	chr22	20193805	20194064	+	26.90879	NA	promoter-TSS (NR_026919)	promoter-TSS (NR_026919)	79	NR_026919	150197	Hs.635544	NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
19-PTNLD28-TUMOR_peak_51565	chr2	24338054	24338277	+	26.89899	NA	TTS (NM_199346)	TTS (NM_199346)	7986	NM_199346	375189	Hs.442718	NM_199346		PFN4	-	profilin family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_70787	chr3	130105561	130105749	+	26.89899	NA	intron (NM_153264, intron 5 of 39)	intron (NM_153264, intron 5 of 39)	41296	NR_022012	256076	Hs.205403	NM_153264	HPRD:08196	COL6A5	COL29A1|VWA4	collagen, type VI, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_57069	chr2	175498454	175498626	+	26.89255	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	767	NM_003387	7456	Hs.128067	NM_003387	HPRD:03835	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_52494	chr2	45060856	45061138	+	26.89255	NA	Intergenic	Intergenic	107649	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	-	SIX3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58156	chr2	210798857	210799195	+	26.88409	NA	intron (NM_182587, intron 38 of 62)	intron (NM_182587, intron 38 of 62)	-68263	NM_001278289	6120	Hs.282260	NM_006916		RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
19-PTNLD28-TUMOR_peak_58433	chr2	219536699	219537141	+	26.87473	NA	promoter-TSS (NM_022453)	promoter-TSS (NM_022453)	-139	NM_022453	64320	Hs.471403	NM_022453	HPRD:09737	RNF25	AO7	ring finger protein 25	protein-coding
19-PTNLD28-TUMOR_peak_82182	chr5	133274603	133274917	+	26.87473	NA	Intergenic	Intergenic	29646	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_73475	chr3	195285496	195285807	+	26.84875	NA	Intergenic	Intergenic	-15427	NM_006241	5504	Hs.535731	NM_006241	HPRD:03478	PPP1R2	IPP-2|IPP2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_11988	chr10	11077376	11077577	+	26.80639	NA	intron (NM_006561, intron 1 of 14)	intron (NM_006561, intron 1 of 14)	17583	NM_006561	10659	Hs.309288	NM_006561	HPRD:03964	CELF2	BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_30458	chr14	56177983	56178233	+	26.80639	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	-54855	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_88828	chr6	95583543	95584073	+	26.79551	NA	Intergenic	L1P1|LINE|L1	441519	NR_104136	101927288	Hs.616643	NR_047502		MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_103273	chr9	44164062	44164271	+	26.79551	NA	Intergenic	Intergenic	-220419	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_89198	chr6	116269977	116270215	+	26.79551	NA	intron (NM_002031, intron 5 of 7)	MIR|SINE|MIR	-89798	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_61569	chr20	46664784	46664959	+	26.79551	NA	Intergenic	MIR3|SINE|MIR	-46010	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
19-PTNLD28-TUMOR_peak_95726	chr7	138701697	138702075	+	26.77639	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	18889	NM_080660	92092	Hs.512833	NM_080660	HPRD:14440	ZC3HAV1L	C7orf39	zinc finger CCCH-type, antiviral 1-like	protein-coding
19-PTNLD28-TUMOR_peak_26856	chr12	123122427	123122642	+	26.77079	NA	Intergenic	Intergenic	65370	NM_177551	338442	Hs.524812	NM_177551	HPRD:16453	HCAR2	GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g	hydroxycarboxylic acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_82668	chr5	140295989	140296227	+	26.77079	NA	intron (NM_018904, intron 1 of 3)	L1M1|LINE|L1	-10194	NM_031882	56135	Hs.199343	NM_018898	HPRD:07555	PCDHAC1	PCDH-ALPHA-C1	protocadherin alpha subfamily C, 1	protein-coding
19-PTNLD28-TUMOR_peak_69095	chr3	74116415	74116937	+	26.77079	NA	Intergenic	Intergenic	-442604	NM_015009	23024	Hs.743998	NM_015009	HPRD:15115	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_9432	chr1	203433291	203433677	+	26.76260	NA	Intergenic	Intergenic	-11399	NM_002725	5549	Hs.632481	NM_002725	HPRD:03556	PRELP	MST161|MSTP161|SLRR2A	proline/arginine-rich end leucine-rich repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_104907	chr9	100883445	100883682	+	26.74488	NA	3' UTR (NM_003389, exon 12 of 12)	3' UTR (NM_003389, exon 12 of 12)	-1928	NM_033219	9830	Hs.575631	NM_014788	HPRD:05948	TRIM14	-	tripartite motif containing 14	protein-coding
19-PTNLD28-TUMOR_peak_4751	chr1	89488321	89488633	+	26.73087	NA	promoter-TSS (NM_018284)	promoter-TSS (NM_018284)	72	NM_018284	2635	Hs.720167	NM_018284	HPRD:02683	GBP3	-	guanylate binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_53554	chr2	74642940	74643367	+	26.72587	NA	exon (NM_001145054, exon 2 of 4)	exon (NM_001145054, exon 2 of 4)	1691	NM_001145054	388963	Hs.445377	NM_001145054	ENSG00000159239	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
19-PTNLD28-TUMOR_peak_59534	chr20	3140473	3140733	+	26.71448	NA	promoter-TSS (NM_021826)	promoter-TSS (NM_021826)	-47	NM_199415	22888	Hs.654646	NM_014948	HPRD:15605	UBOX5	RNF37|UBCE7IP5|UIP5	U-box domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_21814	chr11	123431874	123432112	+	26.71199	NA	intron (NM_001286564, intron 1 of 19)	intron (NM_001286564, intron 1 of 19)	1023	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_44801	chr18	19744482	19744784	+	26.69749	NA	Intergenic	Intergenic	4296	NR_102763	100128893	Hs.514745	NR_102763	ENSG00000266010	GATA6-AS1	locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_29594	chr14	24779855	24780411	+	26.69749	NA	promoter-TSS (NM_001143919)	promoter-TSS (NM_001143919)	443	NM_014430	27141	Hs.642693	NM_014430	HPRD:11981	CIDEB	-	cell death-inducing DFFA-like effector b	protein-coding
19-PTNLD28-TUMOR_peak_57102	chr2	176624801	176624936	+	26.69377	NA	Intergenic	L1PA3|LINE|L1	242150	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_43393	chr17	73185413	73185638	+	26.69377	NA	Intergenic	MIR|SINE|MIR	-6427	NM_006937	6613	Hs.380973	NM_006937	HPRD:04332	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin-like modifier 2	protein-coding
19-PTNLD28-TUMOR_peak_19158	chr11	64290985	64291328	+	26.69377	NA	Intergenic	Intergenic	-31942	NM_018484	55867	Hs.220844	NM_018484	HPRD:06161	SLC22A11	OAT4|hOAT4	solute carrier family 22 (organic anion/urate transporter), member 11	protein-coding
19-PTNLD28-TUMOR_peak_71360	chr3	141378759	141379430	+	26.67797	NA	Intergenic	CpG	-77957	NM_014245	9616	Hs.134623	NM_014245		RNF7	CKBBP1|ROC2|SAG	ring finger protein 7	protein-coding
19-PTNLD28-TUMOR_peak_16775	chr11	3830458	3830609	+	26.67068	NA	intron (NR_104272, intron 1 of 4)	intron (NR_104272, intron 1 of 4)	767	NM_014489	27315	Hs.133968	NM_014489	HPRD:17016	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
19-PTNLD28-TUMOR_peak_84816	chr6	2807893	2808148	+	26.66310	NA	Intergenic	Intergenic	34263	NR_073111	1992	Hs.381167	NM_030666	HPRD:00555	SERPINB1	EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin peptidase inhibitor, clade B (ovalbumin), member 1	protein-coding
19-PTNLD28-TUMOR_peak_80947	chr5	80461429	80461595	+	26.65855	NA	intron (NM_006909, intron 17 of 26)	intron (NM_006909, intron 17 of 26)	-39950	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_72447	chr3	175505277	175505485	+	26.65855	NA	intron (NM_207015, intron 13 of 13)	L1HS|LINE|L1	-11260	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57583	chr2	196243369	196243507	+	26.65855	NA	Intergenic	L1PA3|LINE|L1	-278094	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_25672	chr12	96005860	96006080	+	26.65855	NA	Intergenic	Intergenic	-37061	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_86989	chr6	35208913	35209321	+	26.63385	NA	intron (NM_152753, intron 10 of 21)	intron (NM_152753, intron 10 of 21)	-18374	NM_003427	7629	Hs.388024	NM_003427	HPRD:01929	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
19-PTNLD28-TUMOR_peak_50513	chr19	58095286	58095560	+	26.62704	NA	promoter-TSS (NM_001010879)	promoter-TSS (NM_001010879)	-205	NM_001010879	284307	Hs.454830	NM_001010879	HPRD:18321	ZIK1	ZNF762	zinc finger protein interacting with K protein 1	protein-coding
19-PTNLD28-TUMOR_peak_24757	chr12	57545922	57546122	+	26.62704	NA	intron (NM_002332, intron 6 of 88)	intron (NM_002332, intron 6 of 88)	23740	NM_002332	4035	Hs.162757	NM_002332	HPRD:00138	LRP1	A2MR|APOER|APR|CD91|IGFBP3R|LRP|LRP1A|TGFBR5	low density lipoprotein receptor-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_4739	chr1	89358225	89358431	+	26.62704	NA	Intergenic	MER51A|LTR|ERV1	-1027	NM_001514	2959	Hs.481852	NM_001514	HPRD:08928	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
19-PTNLD28-TUMOR_peak_99985	chr8	106535840	106536152	+	26.62032	NA	intron (NM_012082, intron 3 of 7)	intron (NM_012082, intron 3 of 7)	204849	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_48165	chr19	19699466	19699694	+	26.60785	NA	intron (NR_038198, intron 2 of 7)	intron (NR_038198, intron 2 of 7)	30145	NM_025245	80714	Hs.466257	NM_025245	HPRD:16287	PBX4	-	pre-B-cell leukemia homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_49428	chr19	46195067	46195304	+	26.60092	NA	promoter-TSS (NM_001163377)	promoter-TSS (NM_001163377)	258	NM_004597	6633	Hs.515472	NM_004597	HPRD:03038	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide 16.5kDa	protein-coding
19-PTNLD28-TUMOR_peak_33660	chr15	56200009	56200336	+	26.59226	NA	intron (NM_006154, intron 5 of 28)	intron (NM_006154, intron 5 of 28)	9157	NM_001284340	4734	Hs.1565	NM_006154	HPRD:03786	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_54360	chr2	97899456	97899616	+	26.59226	NA	exon (NM_001164315, exon 68 of 76)	exon (NM_001164315, exon 68 of 76)	-44918	NR_103732	100506076	Hs.732616	NR_103732		LOC100506076	-	uncharacterized LOC100506076	ncRNA
19-PTNLD28-TUMOR_peak_94643	chr7	104643892	104644048	+	26.59226	NA	Intergenic	AluJb|SINE|Alu	10618	NR_024586	100216545	Hs.631150	NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_99297	chr8	81113859	81114091	+	26.59226	NA	Intergenic	AluY|SINE|Alu	-30081	NM_001025253	7163	Hs.368433	NM_005079	HPRD:04963	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
19-PTNLD28-TUMOR_peak_41492	chr17	40117808	40118320	+	26.56231	NA	promoter-TSS (NM_033133)	promoter-TSS (NM_033133)	-695	NM_033133	1267	Hs.273621	NM_033133	HPRD:00448	CNP	CNP1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
19-PTNLD28-TUMOR_peak_84650	chr6	308805	308998	+	26.55967	NA	intron (NR_104474, intron 2 of 5)	intron (NR_104474, intron 2 of 5)	16844	NM_001286555	56940	Hs.29106	NM_020185	HPRD:13255	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
19-PTNLD28-TUMOR_peak_66563	chr3	10821797	10822193	+	26.55681	NA	Intergenic	L2c|LINE|L2	-16118	NR_027102	285370	Hs.157613	NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
19-PTNLD28-TUMOR_peak_103283	chr9	44467266	44467450	+	26.55681	NA	Intergenic	Intergenic	82773	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_66358	chr3	8019399	8019700	+	26.55681	NA	intron (NR_110131, intron 2 of 3)	LTR16A2|LTR|ERVL	38445	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
19-PTNLD28-TUMOR_peak_106969	chr9_gl000200_random	15438	15622	+	26.55681	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_87800	chr6	46358375	46358517	+	26.55681	NA	intron (NM_001251973, intron 2 of 4)	intron (NM_001251973, intron 2 of 4)	-64817	NM_005822	10231	Hs.440168	NM_005822	HPRD:05342	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
19-PTNLD28-TUMOR_peak_12942	chr10	35710510	35710722	+	26.54887	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	84814	NM_001282853	219771	Hs.14745	NM_145012	HPRD:10700	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
19-PTNLD28-TUMOR_peak_69364	chr3	97758317	97758709	+	26.54773	NA	Intergenic	Intergenic	-4365	NR_047685	200959	Hs.534578	NM_001105580	ENSG00000183185	GABRR3	-	gamma-aminobutyric acid (GABA) A receptor, rho 3	protein-coding
19-PTNLD28-TUMOR_peak_56824	chr2	168882071	168882333	+	26.54773	NA	intron (NM_013233, intron 14 of 17)	intron (NM_013233, intron 14 of 17)	207020	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_17816	chr11	31808974	31809203	+	26.54773	NA	3' UTR (NM_000280, exon 13 of 13)	3' UTR (NM_000280, exon 13 of 13)	23602	NM_001258465	5080	Hs.270303	NM_000280	HPRD:06167	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
19-PTNLD28-TUMOR_peak_80634	chr5	72836110	72836380	+	26.54163	NA	Intergenic	Intergenic	25266	NM_023039	57763	Hs.239154	NM_023039	HPRD:12044	ANKRA2	ANKRA	ankyrin repeat, family A (RFXANK-like), 2	protein-coding
19-PTNLD28-TUMOR_peak_16465	chr11	364472	364708	+	26.54163	NA	Intergenic	ERVL-E-int|LTR|ERVL	-5205	NM_178537	338707	Hs.148074	NM_178537	HPRD:08046	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding
19-PTNLD28-TUMOR_peak_55903	chr2	135208509	135208688	+	26.52780	NA	3' UTR (NM_002410, exon 16 of 16)	3' UTR (NM_002410, exon 16 of 16)	196768	NM_002410	4249	Hs.4988	NM_002410	HPRD:03467	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_78858	chr5	9959193	9959441	+	26.52780	NA	Intergenic	MER50B|LTR|ERV1	-55381	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LOC285692	-	uncharacterized LOC285692	ncRNA
19-PTNLD28-TUMOR_peak_38614	chr16	71560116	71560472	+	26.52780	NA	5' UTR (NM_001166395, exon 1 of 2)	5' UTR (NM_001166395, exon 1 of 2)	140	NM_001166395	10164	Hs.251383	NM_005769	HPRD:07477	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_15955	chr10	121417871	121418041	+	26.52780	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	7074	NM_004281	9531	Hs.523309	NM_004281	HPRD:04860	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2-associated athanogene 3	protein-coding
19-PTNLD28-TUMOR_peak_106072	chr9	127888349	127888597	+	26.49168	NA	intron (NM_173690, intron 2 of 18)	MLT1F1|LTR|ERVL-MaLR	17365	NM_173690	286205	Hs.59504	NM_173690	HPRD:12941	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
19-PTNLD28-TUMOR_peak_51639	chr2	26173971	26174218	+	26.49168	NA	intron (NM_002254, intron 5 of 7)	intron (NM_002254, intron 5 of 7)	31349	NM_002254	3797	Hs.21611	NM_002254	HPRD:04164	KIF3C	-	kinesin family member 3C	protein-coding
19-PTNLD28-TUMOR_peak_58661	chr2	226979898	226980117	+	26.49168	NA	Intergenic	Intergenic	-27503	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
19-PTNLD28-TUMOR_peak_20230	chr11	77790719	77790986	+	26.47872	NA	5' UTR (NM_001203262, exon 1 of 3)	5' UTR (NM_001203262, exon 1 of 3)	413	NM_001203260	100532726	Hs.407860	NM_001203260		NDUFC2-KCTD14	-	NDUFC2-KCTD14 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_19497	chr11	67232274	67232469	+	26.47637	NA	intron (NM_001078650, intron 4 of 5)	CpG	4377	NR_073409	80194	Hs.288761	NM_025124	HPRD:08642	TMEM134	-	transmembrane protein 134	protein-coding
19-PTNLD28-TUMOR_peak_35886	chr16	3059684	3060164	+	26.47121	NA	Intergenic	Intergenic	-2533	NM_020982	9080	Hs.296949	NM_020982	HPRD:13071	CLDN9	-	claudin 9	protein-coding
19-PTNLD28-TUMOR_peak_55945	chr2	136833087	136833442	+	26.46434	NA	Intergenic	HERVK3-int|LTR|ERVK	40549	NM_001008540	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_104624	chr9	95766054	95766599	+	26.46434	NA	exon (NM_001083536, exon 5 of 18)	exon (NM_001083536, exon 5 of 18)	10900	NR_121565	101927954	Hs.673794	NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
19-PTNLD28-TUMOR_peak_5954	chr1	120018579	120018747	+	26.46434	NA	Intergenic	Intergenic	-31163	NM_000862	3283	Hs.364941	NM_000862	HPRD:04920	HSD3B1	3BETAHSD|HSD3B|HSDB3|HSDB3A|I|SDR11E1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding
19-PTNLD28-TUMOR_peak_20943	chr11	106022849	106023146	+	26.46434	NA	Intergenic	MER61D|LTR|ERV1	-74532	NM_198439	143879	Hs.101949	NM_152433	HPRD:10005	KBTBD3	BKLHD3	kelch repeat and BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_84121	chr5	173750939	173751269	+	26.45714	NA	Intergenic	Intergenic	-12253	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_69710	chr3	111280806	111280995	+	26.45474	NA	intron (NM_198196, intron 2 of 14)	L1PA2|LINE|L1	19974	NM_198196	10225	Hs.142023	NM_005816	HPRD:06916	CD96	TACTILE	CD96 molecule	protein-coding
19-PTNLD28-TUMOR_peak_28848	chr13	100464982	100465221	+	26.45474	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	-83846	NR_046525	101927465	Hs.130690	NR_046525		CLYBL-AS1	-	CLYBL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25366	chr12	76228328	76228726	+	26.45474	NA	Intergenic	Intergenic	197029	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_107908	chrX	34400660	34400856	+	26.45474	NA	Intergenic	MER103C|DNA|hAT-Charlie	-250311	NM_203408	158724	Hs.143268	NM_203408	HPRD:10947	FAM47A	-	family with sequence similarity 47, member A	protein-coding
19-PTNLD28-TUMOR_peak_33766	chr15	59210522	59210728	+	26.45474	NA	intron (NM_001013843, intron 2 of 20)	intron (NM_001013843, intron 2 of 20)	15227	NM_024755	79811	Hs.512932	NM_017968	HPRD:07819	SLTM	Met	SAFB-like, transcription modulator	protein-coding
19-PTNLD28-TUMOR_peak_28174	chr13	47710396	47710594	+	26.45474	NA	Intergenic	Intergenic	-239284	NM_000621	3356	Hs.72630	NM_000621	HPRD:01638	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_34362	chr15	72267926	72268191	+	26.45474	NA	intron (NM_006901, intron 12 of 41)	MER21A|LTR|ERVL	-138541	NM_001166340	123228	Hs.513002	NM_145204	HPRD:09784	SENP8	DEN1|NEDP1|PRSC2	SUMO/sentrin specific peptidase family member 8	protein-coding
19-PTNLD28-TUMOR_peak_46032	chr18	57899882	57900093	+	26.45474	NA	Intergenic	Intergenic	140014	NM_005912	4160	Hs.532833	NM_005912	HPRD:01116	MC4R	-	melanocortin 4 receptor	protein-coding
19-PTNLD28-TUMOR_peak_97728	chr8	24697471	24697705	+	26.45474	NA	Intergenic	L1PA3|LINE|L1	-73686	NM_005382	4741	Hs.458657	NM_005382	HPRD:01205	NEFM	NEF3|NF-M|NFM	neurofilament, medium polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_85929	chr6	23574714	23574910	+	26.45474	NA	Intergenic	L2c|LINE|L2	-551602	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_56868	chr2	169966405	169966524	+	26.45474	NA	Intergenic	Intergenic	28847	NM_001142271	10170	Hs.179608	NM_005771	HPRD:09916	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4	dehydrogenase/reductase (SDR family) member 9	protein-coding
19-PTNLD28-TUMOR_peak_90186	chr6	156868983	156869122	+	26.45474	NA	Intergenic	tRNA-Leu-TTA(m)|tRNA|tRNA	-230012	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_80605	chr5	72389929	72390112	+	26.45474	NA	Intergenic	AluSx3|SINE|Alu	-26368	NM_001161342	134285	Hs.162246	NM_173490	HPRD:14057	TMEM171	PRP2	transmembrane protein 171	protein-coding
19-PTNLD28-TUMOR_peak_33481	chr15	48049183	48049371	+	26.45474	NA	intron (NM_153619, intron 1 of 17)	intron (NM_153619, intron 1 of 17)	38591	NM_024966	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_29006	chr13	109624222	109624554	+	26.45474	NA	intron (NM_015011, intron 20 of 34)	AluJb|SINE|Alu	195263	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99441	chr8	87562505	87562660	+	26.45474	NA	intron (NM_003909, intron 12 of 16)	AluJb|SINE|Alu	35926	NM_003909	8895	Hs.191219	NM_003909	HPRD:05016	CPNE3	CPN3|PRO1071	copine III	protein-coding
19-PTNLD28-TUMOR_peak_15186	chr10	101098909	101099071	+	26.45474	NA	intron (NM_020348, intron 1 of 10)	intron (NM_020348, intron 1 of 10)	10134	NM_020348	26507	Hs.274579	NM_020348	HPRD:07417	CNNM1	ACDP1|CLP-1	cyclin and CBS domain divalent metal cation transport mediator 1	protein-coding
19-PTNLD28-TUMOR_peak_107788	chrX	22318421	22318674	+	26.45474	NA	intron (NR_073010, intron 5 of 5)	intron (NR_073010, intron 5 of 5)	27517	NM_152577	158506	Hs.132485	NM_152577	HPRD:06545	ZNF645	CT138|HAKAIL	zinc finger protein 645	protein-coding
19-PTNLD28-TUMOR_peak_109625	chrX	138802385	138802627	+	26.45474	NA	Intergenic	Intergenic	-12125	NM_001171876	4168	Hs.387262	NM_005369	HPRD:02406	MCF2	ARHGEF21|DBL	MCF.2 cell line derived transforming sequence	protein-coding
19-PTNLD28-TUMOR_peak_77705	chr4	154564644	154564816	+	26.45474	NA	Intergenic	Intergenic	-40711	NM_003264	7097	Hs.519033	NM_003264		TLR2	CD282|TIL4	toll-like receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_62156	chr20	53950456	53950604	+	26.45474	NA	Intergenic	Intergenic	-89051	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_85253	chr6	10081405	10081574	+	26.45474	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	-331062	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9885	chr1	209780742	209781001	+	26.45474	NA	intron (NM_020439, intron 6 of 12)	intron (NM_020439, intron 6 of 12)	15984	NR_036213	100422894		NR_036213		MIR4260	-	microRNA 4260	ncRNA
19-PTNLD28-TUMOR_peak_74937	chr4	37803768	37803990	+	26.45474	NA	Intergenic	MIRb|SINE|MIR	-24403	NM_018290	55276	Hs.23363	NM_018290	HPRD:11761	PGM2	-	phosphoglucomutase 2	protein-coding
19-PTNLD28-TUMOR_peak_51362	chr2	18116074	18116294	+	26.45474	NA	Intergenic	Intergenic	56260	NM_002252	3790	Hs.414489	NM_002252	HPRD:04865	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
19-PTNLD28-TUMOR_peak_108654	chrX	69643038	69643215	+	26.45474	NA	5' UTR (NM_001171192, exon 1 of 17)	5' UTR (NM_001171192, exon 1 of 17)	245	NM_017711	54857	Hs.438712	NM_017711	HPRD:06528	GDPD2	GDE3|OBDPF	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_104775	chr9	98389278	98389517	+	26.45474	NA	Intergenic	Intergenic	-110150	NM_001083603	5727	Hs.494538	NM_000264	HPRD:03200	PTCH1	BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11	patched 1	protein-coding
19-PTNLD28-TUMOR_peak_92047	chr7	37034129	37034341	+	26.45474	NA	intron (NM_001206480, intron 16 of 21)	intron (NM_001206480, intron 16 of 21)	-3166	NR_104120	100861514	Hs.627775	NR_104120		ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3855	chr1	59745485	59745699	+	26.45474	NA	Intergenic	Intergenic	-17033	NM_001113411	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_15205	chr10	101539624	101539825	+	26.45474	NA	Intergenic	L1MCa|LINE|L1	-2631	NM_000392	1244	Hs.368243	NM_000392	HPRD:03065	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding
19-PTNLD28-TUMOR_peak_67070	chr3	19975648	19975799	+	26.45474	NA	promoter-TSS (NM_144715)	promoter-TSS (NM_144715)	-17	NM_144715	151651	Hs.733920	NM_144715	HPRD:08054	EFHB	CFAP21	EF-hand domain family, member B	protein-coding
19-PTNLD28-TUMOR_peak_65368	chr22	37178108	37178301	+	26.45474	NA	Intergenic	Intergenic	-6027	NR_033531	11020	Hs.415172	NM_006860	ENSG00000100360	IFT27	BBS19|RABL4|RAYL	intraflagellar transport 27	protein-coding
19-PTNLD28-TUMOR_peak_92494	chr7	48945440	48945599	+	26.45474	NA	Intergenic	Intergenic	-18638	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_91450	chr7	19030100	19030255	+	26.45474	NA	intron (NM_178423, intron 25 of 25)	L1PA3|LINE|L1	127118	NM_000474	7291	Hs.66744	NM_000474	HPRD:03374	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_14449	chr10	78954995	78955206	+	26.45474	NA	intron (NM_001271519, intron 3 of 28)	intron (NM_001271519, intron 3 of 28)	54511	NR_120654	101929310	Hs.666457	NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_18181	chr11	42456219	42456399	+	26.45474	NA	Intergenic	L1PA2|LINE|L1	-181069	NR_038309	100507205	Hs.99310	NR_038309		LOC100507205	-	uncharacterized LOC100507205	ncRNA
19-PTNLD28-TUMOR_peak_106042	chr9	127155155	127155416	+	26.45474	NA	intron (NM_002799, intron 5 of 7)	intron (NM_002799, intron 5 of 7)	22467	NM_002799	5695	Hs.213470	NM_002799	HPRD:04940	PSMB7	Z	proteasome (prosome, macropain) subunit, beta type, 7	protein-coding
19-PTNLD28-TUMOR_peak_25866	chr12	103188989	103189131	+	26.45474	NA	Intergenic	L2a|LINE|L2	29117	NR_033855	283432	Hs.382110	NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
19-PTNLD28-TUMOR_peak_40929	chr17	29596819	29596972	+	26.45474	NA	intron (NM_000267, intron 35 of 56)	MLT1K|LTR|ERVL-MaLR	27485	NM_002544	4974	Hs.113874	NM_002544	HPRD:01257	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_109223	chrX	114606978	114607192	+	26.45474	NA	Intergenic	Intergenic	82802	NM_016383	51213	Hs.242183	NM_016383	HPRD:06589	LUZP4	CT-28|CT-8|CT28|HOM-TES-85	leucine zipper protein 4	protein-coding
19-PTNLD28-TUMOR_peak_109496	chrX	132219961	132220130	+	26.45474	NA	Intergenic	MER6|DNA|TcMar-Tigger	-57745	NM_031907	83844	Hs.333137	NM_031907	HPRD:02255	USP26	-	ubiquitin specific peptidase 26	protein-coding
19-PTNLD28-TUMOR_peak_62816	chr21	16779248	16779435	+	26.45474	NA	Intergenic	Intergenic	-323003	NM_013396	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_33775	chr15	59484171	59484361	+	26.45474	NA	intron (NM_004998, intron 17 of 27)	intron (NM_004998, intron 17 of 27)	-14749	NM_033195	92483	Hs.307052	NM_033195	HPRD:13981	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A-like 6B	protein-coding
19-PTNLD28-TUMOR_peak_13714	chr10	59273430	59273745	+	26.45474	NA	Intergenic	MER51E|LTR|ERV1	-209268	NR_037490	100500834		NR_037490	miRBase:MI0016432	MIR3924	-	microRNA 3924	ncRNA
19-PTNLD28-TUMOR_peak_36495	chr16	15556622	15556792	+	26.45474	NA	intron (NM_033201, intron 1 of 5)	intron (NM_033201, intron 1 of 5)	28382	NM_033201	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_25010	chr12	65190082	65190309	+	26.45474	NA	Intergenic	Intergenic	-28157	NM_015279	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family, member 30	protein-coding
19-PTNLD28-TUMOR_peak_90021	chr6	151156863	151157069	+	26.45474	NA	intron (NM_001029884, intron 16 of 16)	intron (NM_001029884, intron 16 of 16)	-29849	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_57106	chr2	176720541	176720723	+	26.45474	NA	Intergenic	Intergenic	146386	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_27821	chr13	35437847	35438039	+	26.45474	NA	Intergenic	Intergenic	-78481	NM_015678	26960	Hs.491172	NM_015678	HPRD:05352	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
19-PTNLD28-TUMOR_peak_69302	chr3	90059609	90059802	+	26.45474	NA	Intergenic	L2a|LINE|L2	903031	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_74766	chr4	24220936	24221142	+	26.45474	NA	Intergenic	Intergenic	300874	NR_030299	693158		NR_030299	miRBase:MI0003580	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
19-PTNLD28-TUMOR_peak_20567	chr11	92180459	92180694	+	26.45474	NA	intron (NM_001008781, intron 1 of 24)	MIRb|SINE|MIR	95314	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_101784	chr8	145792672	145792819	+	26.45474	NA	intron (NM_025251, intron 4 of 12)	LTR13|LTR|ERVK	-38287	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_71988	chr3	157885938	157886156	+	26.45474	NA	intron (NM_001271834, intron 3 of 8)	intron (NM_001271834, intron 3 of 8)	58206	NM_016625	51319	Hs.591283	NM_016625	HPRD:18006	RSRC1	SFRS21|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding
19-PTNLD28-TUMOR_peak_19874	chr11	72193407	72193581	+	26.45474	NA	Intergenic	Intergenic	-47770	NM_001258392	81570	Hs.523877	NM_030813	HPRD:11560	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_24991	chr12	64943403	64943609	+	26.43839	NA	Intergenic	Intergenic	-60787	NR_040718	283349	Hs.643605	NM_178169	HPRD:08448	RASSF3	RASSF5	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_70891	chr3	132826420	132826641	+	26.43839	NA	intron (NM_001136469, intron 2 of 5)	intron (NM_001136469, intron 2 of 5)	-17135	NM_001282865	66000	Hs.191616	NM_023943	HPRD:11329	TMEM108	CT124	transmembrane protein 108	protein-coding
19-PTNLD28-TUMOR_peak_84192	chr5	175269991	175270188	+	26.43839	NA	intron (NM_006650, intron 2 of 4)	intron (NM_006650, intron 2 of 4)	-28412	NM_001008220	10814	Hs.193235	NM_006650	HPRD:09234	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
19-PTNLD28-TUMOR_peak_68191	chr3	50226704	50226976	+	26.40997	NA	TTS (NM_004186)	TTS (NM_004186)	-2203	NM_000172	2779	Hs.517978	NM_000172		GNAT1	CSNBAD3|GBT1|GNATR	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_17471	chr11	17549744	17549941	+	26.40202	NA	intron (NM_001297764, intron 4 of 19)	intron (NM_001297764, intron 4 of 19)	16121	NM_153676	10083	Hs.502072	NM_005709	HPRD:09241	USH1C	AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst	Usher syndrome 1C (autosomal recessive, severe)	protein-coding
19-PTNLD28-TUMOR_peak_6493	chr1	147694790	147694986	+	26.39996	NA	intron (NR_120331, intron 3 of 4)	intron (NR_120331, intron 3 of 4)	24454	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
19-PTNLD28-TUMOR_peak_72208	chr3	168726653	168727067	+	26.39343	NA	Intergenic	Intergenic	107127	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LOC100507661	-	uncharacterized LOC100507661	ncRNA
19-PTNLD28-TUMOR_peak_3865	chr1	59910843	59911055	+	26.39343	NA	intron (NM_001113411, intron 5 of 16)	L2c|LINE|L2	-70352	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_16199	chr10	127916420	127916588	+	26.39343	NA	intron (NM_001288975, intron 3 of 18)	intron (NM_001288975, intron 3 of 18)	160623	NM_001288975	8038	Hs.594351	NM_003474	HPRD:04092	ADAM12	ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA	ADAM metallopeptidase domain 12	protein-coding
19-PTNLD28-TUMOR_peak_52325	chr2	42137397	42137646	+	26.39343	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	23342	NR_110263	101929723	Hs.369330	NR_110262		LOC101929723	-	uncharacterized LOC101929723	ncRNA
19-PTNLD28-TUMOR_peak_78960	chr5	12920565	12920917	+	26.39343	NA	Intergenic	HERVL-int|LTR|ERVL	345772	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_63903	chr21	45303937	45304115	+	26.37365	NA	intron (NM_020132, intron 1 of 9)	intron (NM_020132, intron 1 of 9)	18910	NM_020132	56894	Hs.248785	NM_020132	HPRD:10637	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_65265	chr22	35696545	35696852	+	26.36225	NA	intron (NR_024194, intron 1 of 14)	intron (NR_024194, intron 1 of 14)	901	NR_024195	10043	Hs.474705	NM_005488	HPRD:05265	TOM1	-	target of myb1 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_80169	chr5	60697663	60697849	+	26.36216	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	69656	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_106776	chr9	139695508	139695829	+	26.36005	NA	intron (NM_001039374, intron 5 of 13)	intron (NM_001039374, intron 5 of 13)	4878	NM_001039374	84960	Hs.728796	NM_032874	HPRD:17234	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
19-PTNLD28-TUMOR_peak_60005	chr20	17830507	17830783	+	26.34630	NA	Intergenic	Intergenic	112944	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
19-PTNLD28-TUMOR_peak_108567	chrX	64917076	64917415	+	26.34630	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	29734	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_96494	chr7	152608662	152609000	+	26.34430	NA	Intergenic	Intergenic	151997	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_94459	chr7	101435311	101435554	+	26.34036	NA	Intergenic	AluJr|SINE|Alu	-23752	NM_001913	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_94940	chr7	117356865	117357299	+	26.33842	NA	intron (NM_033427, intron 22 of 22)	intron (NM_033427, intron 22 of 22)	156479	NM_033427	83992	Hs.592285	NM_033427	HPRD:09890	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_40194	chr17	10113564	10113833	+	26.32996	NA	Intergenic	Intergenic	-11830	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_100565	chr8	124877650	124877824	+	26.32996	NA	intron (NM_001039112, intron 1 of 40)	L1PA2|LINE|L1	13510	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_50836	chr2	3307428	3307632	+	26.32996	NA	intron (NM_003310, intron 3 of 8)	intron (NM_003310, intron 3 of 8)	74123	NM_003310	7260	Hs.502770	NM_003310	HPRD:10287	TSSC1	-	tumor suppressing subtransferable candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_48111	chr19	18958003	18958248	+	26.32500	NA	intron (NM_001297549, intron 2 of 23)	intron (NM_001297549, intron 2 of 23)	15381	NM_002911	5976	Hs.515266	NM_002911	HPRD:03254	UPF1	HUPF1|NORF1|RENT1|pNORF1|smg-2	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_101765	chr8	145654581	145655005	+	26.30837	NA	promoter-TSS (NM_016208)	promoter-TSS (NM_016208)	-847	NM_016208	51160	Hs.418175	NM_016208	HPRD:11675	VPS28	-	vacuolar protein sorting 28 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_4827	chr1	91439864	91440207	+	26.29827	NA	intron (NM_201269, intron 2 of 5)	L2a|LINE|L2	47030	NM_016620	84146	Hs.173001	NM_016620	HPRD:15885	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
19-PTNLD28-TUMOR_peak_49280	chr19	44269397	44269678	+	26.29827	NA	Intergenic	Intergenic	-10395	NM_019108	56006	Hs.466875	NM_019108	HPRD:07800	SMG9	C19orf61|F17127_1	SMG9 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_40192	chr17	10083850	10084056	+	26.29827	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	17915	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_42720	chr17	58760542	58760734	+	26.29827	NA	intron (NM_017679, intron 2 of 23)	intron (NM_017679, intron 2 of 23)	5466	NM_001099432	54828	Hs.655028	NM_017679	HPRD:06313	BCAS3	GAOB1|MAAB	breast carcinoma amplified sequence 3	protein-coding
19-PTNLD28-TUMOR_peak_9122	chr1	200271371	200271959	+	26.29827	NA	Intergenic	Intergenic	71255	NR_040064	554279	Hs.434694	NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
19-PTNLD28-TUMOR_peak_26100	chr12	108143017	108143232	+	26.29455	NA	intron (NM_012406, intron 5 of 11)	intron (NM_012406, intron 5 of 11)	11790	NM_012406	11108	Hs.506655	NM_012406	HPRD:10425	PRDM4	PFM1	PR domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_40344	chr17	16743571	16743772	+	26.28919	NA	Intergenic	Intergenic	-7524	NR_029392	400578	Hs.723586	NR_029392	ENSG00000227300	KRT16P2	-	keratin 16 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_95934	chr7	142026680	142026836	+	26.28753	NA	Intergenic	Intergenic	-54690	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_49838	chr19	49935644	49935808	+	26.26700	NA	intron (NM_020309, intron 9 of 11)	intron (NM_020309, intron 9 of 11)	6038	NM_001195256	100507003	Hs.553831	NM_001195256		GFY	Goofy	golgi-associated, olfactory signaling regulator	protein-coding
19-PTNLD28-TUMOR_peak_1125	chr1	17096889	17097138	+	26.26648	NA	Intergenic	Intergenic	-6038	NM_001271733	11223	Hs.349110	NM_001271733		MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1-like	protein-coding
19-PTNLD28-TUMOR_peak_42633	chr17	57407867	57408199	+	26.25912	NA	Intergenic	Intergenic	-1020	NM_001005404	388403	Hs.463613	NM_001005404	HPRD:15682	YPEL2	-	yippee-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_26900	chr12	123626611	123626792	+	26.25648	NA	Intergenic	Intergenic	-31665	NM_001300801	57605	Hs.272759	NM_020845	HPRD:08335	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding
19-PTNLD28-TUMOR_peak_101625	chr8	144483470	144483657	+	26.25648	NA	Intergenic	Intergenic	29039	NM_201589	389692	Hs.521914	NM_201589	HPRD:14346	MAFA	RIPE3b1|hMafA	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A	protein-coding
19-PTNLD28-TUMOR_peak_44951	chr18	21656199	21656558	+	26.25648	NA	intron (NM_153211, intron 4 of 13)	intron (NM_153211, intron 4 of 13)	-36939	NM_001292030	125488	Hs.128576	NM_153211	HPRD:08745	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
19-PTNLD28-TUMOR_peak_106133	chr9	129568105	129568309	+	26.25648	NA	intron (NM_001135776, intron 1 of 1)	intron (NM_001135776, intron 1 of 1)	922	NM_001135776	23099	Hs.355581	NM_014007	HPRD:08346	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19-PTNLD28-TUMOR_peak_75463	chr4	58013587	58013807	+	26.25648	NA	intron (NR_034081, intron 1 of 4)	intron (NR_034081, intron 1 of 4)	-37146	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_94227	chr7	99229286	99229551	+	26.25648	NA	3' UTR (NM_145115, exon 8 of 8)	3' UTR (NM_145115, exon 8 of 8)	14847	NM_145115	221785	Hs.446297	NM_145115	HPRD:15807	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
19-PTNLD28-TUMOR_peak_93649	chr7	80351289	80351438	+	26.24844	NA	Intergenic	Intergenic	75394	NM_001289908	948	Hs.120949	NM_000072	HPRD:01430	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_1775	chr1	27763137	27763304	+	26.24314	NA	intron (NM_001201404, intron 1 of 7)	intron (NM_001201404, intron 1 of 7)	44072	NM_005281	2827	Hs.66542	NM_005281	HPRD:02587	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_78794	chr5	8363327	8363520	+	26.24314	NA	intron (NR_039984, intron 3 of 5)	intron (NR_039984, intron 3 of 5)	94254	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
19-PTNLD28-TUMOR_peak_36405	chr16	14097011	14097511	+	26.22209	NA	Intergenic	Intergenic	12614	NR_110909	101927311		NR_110909		LOC101927311	-	uncharacterized LOC101927311	ncRNA
19-PTNLD28-TUMOR_peak_52168	chr2	37938578	37938824	+	26.22209	NA	Intergenic	Intergenic	-39023	NM_001270436	10602	Hs.369574	NM_006449	HPRD:09364	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
19-PTNLD28-TUMOR_peak_60320	chr20	25450763	25450967	+	26.22209	NA	intron (NM_025176, intron 17 of 23)	intron (NM_025176, intron 17 of 23)	62542	NM_021067	9837	Hs.658464	NM_021067	HPRD:11067	GINS1	PSF1	GINS complex subunit 1 (Psf1 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_26814	chr12	122501070	122501481	+	26.21458	NA	Intergenic	Intergenic	-15359	NM_014938	22877	Hs.437153	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_49324	chr19	45227940	45228161	+	26.20788	NA	Intergenic	AluSx|SINE|Alu	-23928	NM_005178	602	Hs.31210	NM_005178	HPRD:00179	BCL3	BCL4|D19S37	B-cell CLL/lymphoma 3	protein-coding
19-PTNLD28-TUMOR_peak_72227	chr3	169397675	169397831	+	26.20773	NA	Intergenic	L1PA2|LINE|L1	-16190	NM_004991	2122	Hs.744090	NM_004991	HPRD:01310	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
19-PTNLD28-TUMOR_peak_20109	chr11	75459668	75459966	+	26.20773	NA	Intergenic	L1PA2|LINE|L1	19875	NR_046090	283214	Hs.591972	NR_046090	ENSG00000247867	LOC283214	-	uncharacterized LOC283214	ncRNA
19-PTNLD28-TUMOR_peak_109447	chrX	129473677	129474081	+	26.19701	NA	promoter-TSS (NM_001282198)	promoter-TSS (NM_001282198)	17	NM_001282198	9016	Hs.194686	NM_003951	HPRD:02214	SLC25A14	BMCP1|UCP5	solute carrier family 25 (mitochondrial carrier, brain), member 14	protein-coding
19-PTNLD28-TUMOR_peak_27435	chr13	22809848	22810092	+	26.19701	NA	intron (NR_103810, intron 1 of 1)	intron (NR_103810, intron 1 of 1)	25546	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_17754	chr11	28167736	28167965	+	26.19701	NA	intron (NM_001297775, intron 3 of 6)	intron (NM_001297775, intron 3 of 6)	38052	NM_001297775	196074	Hs.243326	NM_152636	HPRD:08750	METTL15	METT5D1	methyltransferase like 15	protein-coding
19-PTNLD28-TUMOR_peak_50679	chr1_gl000192_random	444136	444332	+	26.17946	NA	intron (NR_120328, intron 3 of 4)	intron (NR_120328, intron 3 of 4)	24449	NR_120328	102724558	Hs.712738	NR_120328		LOC102724558	-	uncharacterized LOC102724558	ncRNA
19-PTNLD28-TUMOR_peak_49536	chr19	47324029	47324477	+	26.17946	NA	Intergenic	Intergenic	9708	NR_024258	100170220	Hs.541243	NR_024258		SNAR-E	-	small ILF3/NF90-associated RNA E	snRNA
19-PTNLD28-TUMOR_peak_78105	chr4	175941315	175941516	+	26.17946	NA	Intergenic	L1PA3|LINE|L1	101906	NM_001278126	11086	Hs.126838	NM_014269	HPRD:05306	ADAM29	CT73|svph1	ADAM metallopeptidase domain 29	protein-coding
19-PTNLD28-TUMOR_peak_43061	chr17	65465345	65465789	+	26.17233	NA	intron (NM_181671, intron 1 of 9)	MER5A1|DNA|hAT-Charlie	92170	NM_012417	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_64750	chr22	24603923	24604275	+	26.17233	NA	Intergenic	L1M5|LINE|L1	26655	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_55549	chr2	128122766	128123184	+	26.17233	NA	Intergenic	LTR33C|LTR|ERVL	-22170	NM_006609	10746	Hs.145605	NM_006609	HPRD:10068	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_21094	chr11	110826553	110826894	+	26.16743	NA	Intergenic	Intergenic	-242811	NM_001258418	57569	Hs.6136	NM_020809	HPRD:10657	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
19-PTNLD28-TUMOR_peak_89141	chr6	112359067	112359336	+	26.16743	NA	Intergenic	MER5B|DNA|hAT-Charlie	-16077	NM_003880	8838	Hs.558428	NM_003880	HPRD:04550	WISP3	CCN6|LIBC|PPAC|PPD	WNT1 inducible signaling pathway protein 3	protein-coding
19-PTNLD28-TUMOR_peak_7944	chr1	166853467	166853787	+	26.13395	NA	Intergenic	CpG	-7973	NM_053053	117143	Hs.435967	NM_053053	HPRD:18114	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
19-PTNLD28-TUMOR_peak_60128	chr20	21137013	21137203	+	26.12534	NA	intron (NM_018474, intron 4 of 12)	Tigger3b|DNA|TcMar-Tigger	30484	NM_001276389	55857	Hs.187635	NM_018474		KIZ	C20orf19|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_24718	chr12	57028727	57029033	+	26.11656	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	1283	NM_013449	11176	Hs.314263	NM_013449	HPRD:10417	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain, 2A	protein-coding
19-PTNLD28-TUMOR_peak_40215	chr17	11522283	11522795	+	26.11613	NA	intron (NM_001372, intron 5 of 68)	intron (NM_001372, intron 5 of 68)	20791	NM_001372	1770	Hs.567259	NM_001372	HPRD:04511	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	dynein, axonemal, heavy chain 9	protein-coding
19-PTNLD28-TUMOR_peak_109110	chrX	107009805	107010214	+	26.11613	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	9008	NM_198057	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_36598	chr16	18973794	18973967	+	26.11613	NA	Intergenic	Intergenic	-21376	NM_024847	79905	Hs.187377	NM_024847	HPRD:15517	TMC7	-	transmembrane channel-like 7	protein-coding
19-PTNLD28-TUMOR_peak_51631	chr2	25934709	25935201	+	26.10022	NA	Intergenic	LTR2C|LTR|ERV1	-38439	NM_033148	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_23439	chr12	25876358	25876573	+	26.09686	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-74969	NM_001145727	160492	Hs.44647	NM_152590	HPRD:08768	LMNTD1	IFLTD1|PAS1C1	lamin tail domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69667	chr3	109267455	109267692	+	26.09686	NA	Intergenic	Intergenic	138736	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_86552	chr6	30949722	30950206	+	26.09686	NA	Intergenic	Intergenic	-1521	NM_001010909	394263	Hs.448277	NM_001010909	HPRD:16665	MUC21	C6orf205|KMQK697|MUC-21|bCX31G15.2	mucin 21, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_70765	chr3	129812612	129812802	+	26.08763	NA	intron (NM_001136152, intron 4 of 7)	intron (NM_001136152, intron 4 of 7)	12033	NM_001136152	644974	Hs.722197	NM_001136152	ENSG00000251287	ALG1L2	-	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_102471	chr9	21964973	21965432	+	26.08488	NA	Intergenic	CpG	-1936	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	ncRNA
19-PTNLD28-TUMOR_peak_22453	chr12	1919366	1919631	+	26.07885	NA	exon (NM_172364, exon 29 of 38)	exon (NM_172364, exon 29 of 38)	-9935	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine-rich repeats and transmembrane domains 2	protein-coding
19-PTNLD28-TUMOR_peak_42521	chr17	55970301	55970559	+	26.07088	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	10320	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61103	chr20	39640152	39640374	+	26.05264	NA	Intergenic	Intergenic	-17199	NM_003286	7150	Hs.472737	NM_003286	HPRD:00535	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
19-PTNLD28-TUMOR_peak_37234	chr16	30420858	30421023	+	26.02906	NA	intron (NM_016643, intron 2 of 2)	intron (NM_016643, intron 2 of 2)	2205	NM_016643	51333	Hs.148584	NM_016643	HPRD:14238	ZNF771	DSC43	zinc finger protein 771	protein-coding
19-PTNLD28-TUMOR_peak_93084	chr7	70738861	70739055	+	26.02155	NA	intron (NM_022479, intron 1 of 10)	intron (NM_022479, intron 1 of 10)	-33702	NR_037479	100500920		NR_037479		MIR3914-2	-	microRNA 3914-2	ncRNA
19-PTNLD28-TUMOR_peak_68383	chr3	53168805	53169017	+	26.01647	NA	Intergenic	Intergenic	-4441	NM_052859	91869	Hs.631910	NM_052859	HPRD:15239	RFT1	CDG1N	RFT1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_14124	chr10	72218119	72218347	+	26.01138	NA	Intergenic	CpG	-16768	NM_018055	4838	Hs.370414	NM_018055		NODAL	HTX5	nodal growth differentiation factor	protein-coding
19-PTNLD28-TUMOR_peak_64371	chr22	19861113	19861317	+	26.01138	NA	Intergenic	Intergenic	-18753	NM_053004	54584	Hs.105642	NM_053004	HPRD:13591	GNB1L	DGCRK3|GY2|WDR14|WDVCF	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding
19-PTNLD28-TUMOR_peak_28093	chr13	45742346	45742726	+	26.01067	NA	intron (NM_004128, intron 4 of 7)	LTR16C|LTR|ERVL	32639	NM_198404	386618	Hs.23406	NM_198404	HPRD:13767	KCTD4	bA321C24.3	potassium channel tetramerization domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_8127	chr1	170208693	170208869	+	26.01067	NA	Intergenic	Intergenic	44568	NR_026957	284688	Hs.135668	NR_026957	ENSG00000224286	LINC01142	-	long intergenic non-protein coding RNA 1142	ncRNA
19-PTNLD28-TUMOR_peak_80559	chr5	71421823	71422164	+	26.01067	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	18875	NM_005909	4131	Hs.335079	NM_005909	HPRD:01139	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule-associated protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_100130	chr8	112477803	112477952	+	26.00910	NA	Intergenic	LTR79|LTR|ERVL	-229445	NR_125418	101927487	Hs.630004	NR_125418		LOC101927487	-	uncharacterized LOC101927487	ncRNA
19-PTNLD28-TUMOR_peak_5584	chr1	112947049	112947184	+	26.00910	NA	intron (NM_018704, intron 1 of 5)	intron (NM_018704, intron 1 of 5)	8316	NM_018704	55917	Hs.744100	NM_018704	HPRD:10906	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_89591	chr6	136838231	136838489	+	26.00910	NA	intron (NM_003980, intron 1 of 17)	intron (NM_003980, intron 1 of 17)	8991	NM_001198611	9053	Hs.486548	NM_003980	HPRD:04982	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
19-PTNLD28-TUMOR_peak_106410	chr9	132779056	132779273	+	26.00910	NA	intron (NM_015033, intron 1 of 16)	L2a|LINE|L2	26309	NM_015033	23048	Hs.189409	NM_015033	HPRD:10446	FNBP1	FBP17	formin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20501	chr11	88131647	88131819	+	26.00910	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-60792	NM_001814	1075	Hs.128065	NM_001814	HPRD:03841	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
19-PTNLD28-TUMOR_peak_71072	chr3	136030189	136030395	+	26.00910	NA	intron (NM_000532, intron 9 of 14)	AluJo|SINE|Alu	61125	NM_001178014	5096	Hs.63788	NM_000532	HPRD:01982	PCCB	-	propionyl CoA carboxylase, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_59442	chr20	1459204	1459530	+	26.00430	NA	intron (NM_001134836, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	-11030	NR_038164	55968	Hs.12865	NM_016143	HPRD:09425	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 (p97) cofactor (p47)	protein-coding
19-PTNLD28-TUMOR_peak_23961	chr12	46867505	46867882	+	26.00430	NA	intron (NR_125380, intron 3 of 3)	intron (NR_125380, intron 3 of 3)	89803	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_95611	chr7	136104406	136104572	+	26.00430	NA	Intergenic	L1PA2|LINE|L1	-442285	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_55929	chr2	136279502	136280008	+	25.99104	NA	intron (NM_032143, intron 1 of 20)	LTR14C|LTR|ERVK	8545	NM_001286569	84083	Hs.658422	NM_032143	HPRD:15896	ZRANB3	4933425L19Rik|AH2	zinc finger, RAN-binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_65909	chr22	45622551	45622927	+	25.97187	NA	intron (NM_001009880, intron 1 of 9)	intron (NM_001009880, intron 1 of 9)	13911	NM_001009880	23313	Hs.592207	NM_015264	HPRD:12802	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
19-PTNLD28-TUMOR_peak_85827	chr6	20202257	20202428	+	25.97187	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	10353	NR_073465	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_47277	chr19	11057682	11057951	+	25.94748	NA	Intergenic	MER20|DNA|hAT-Charlie	-13782	NM_003072	6597	Hs.327527	NM_003072	HPRD:04459	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
19-PTNLD28-TUMOR_peak_108950	chrX	99390383	99390540	+	25.94697	NA	Intergenic	L1PA2|LINE|L1	-195620	NR_024608	442459	Hs.706599	NM_001127438		XRCC6P5	-	X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_90002	chr6	150921906	150922142	+	25.94697	NA	intron (NM_001029884, intron 1 of 16)	CpG	1025	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_66756	chr3	13642401	13642746	+	25.94697	NA	intron (NM_001165035, intron 2 of 17)	intron (NM_001165035, intron 2 of 17)	32333	NM_001165035	2199	Hs.198862	NM_001998	HPRD:00630	FBLN2	-	fibulin 2	protein-coding
19-PTNLD28-TUMOR_peak_64650	chr22	23095093	23095600	+	25.94668	NA	Intergenic	Charlie6|DNA|hAT-Charlie	-69924	NR_030755	723778		NR_030755	miRBase:MI0003665	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
19-PTNLD28-TUMOR_peak_16627	chr11	2000095	2000534	+	25.91676	NA	Intergenic	Intergenic	10836	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44705	chr18	13280480	13280735	+	25.91676	NA	intron (NM_181482, intron 2 of 5)	intron (NM_181482, intron 2 of 5)	2503	NM_181481	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_14371	chr10	76052778	76052905	+	25.90618	NA	intron (NM_001123, intron 3 of 10)	AluJb|SINE|Alu	116594	NM_001202449	132	Hs.656586	NM_001123	HPRD:00039	ADK	AK	adenosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_59162	chr2	239730129	239730345	+	25.90618	NA	Intergenic	Intergenic	-26436	NM_057179	117581	Hs.422585	NM_057179	HPRD:09616	TWIST2	DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_108384	chrX	53292781	53293048	+	25.90618	NA	intron (NM_001111125, intron 2 of 14)	intron (NM_001111125, intron 2 of 14)	17882	NM_001243197	23096	Hs.496138	NM_015075	HPRD:10012	IQSEC2	BRAG1|MRX1	IQ motif and Sec7 domain 2	protein-coding
19-PTNLD28-TUMOR_peak_16243	chr10	130010273	130010468	+	25.90396	NA	Intergenic	Intergenic	-73844	NR_120619	101927381	Hs.523342	NR_120619		LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
19-PTNLD28-TUMOR_peak_33023	chr15	34816064	34816227	+	25.90396	NA	Intergenic	Intergenic	4427	NR_036050	100302160		NR_036050		MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
19-PTNLD28-TUMOR_peak_71653	chr3	149508121	149508387	+	25.90396	NA	intron (NM_001144960, intron 2 of 5)	intron (NM_001144960, intron 2 of 5)	2356	NM_001144960	389161	Hs.665988	NM_001144960	ENSG00000206199	ANKUB1	C3orf16	ankyrin repeat and ubiquitin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_84968	chr6	4299756	4299997	+	25.89392	NA	Intergenic	MLT2B3|LTR|ERVL	163570	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_57383	chr2	187615944	187616118	+	25.89392	NA	exon (NM_177454, exon 5 of 8)	exon (NM_177454, exon 5 of 8)	57242	NM_177454	165215	Hs.28872	NM_177454	HPRD:13907	FAM171B	KIAA1946	family with sequence similarity 171, member B	protein-coding
19-PTNLD28-TUMOR_peak_94099	chr7	97401516	97401718	+	25.89392	NA	Intergenic	Intergenic	40346	NM_013998	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_67264	chr3	26923342	26923490	+	25.89392	NA	Intergenic	L1PA3|LINE|L1	259116	NM_052953	116135	Hs.517868	NM_052953	HPRD:14318	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_48589	chr19	34672456	34672843	+	25.89177	NA	intron (NM_015578, intron 1 of 9)	L2|LINE|L2	9297	NM_001114093	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_95893	chr7	141354363	141354540	+	25.88226	NA	TTS (NM_018238)	TTS (NM_018238)	47502	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
19-PTNLD28-TUMOR_peak_16914	chr11	7597108	7597290	+	25.87300	NA	intron (NM_003621, intron 3 of 23)	intron (NM_003621, intron 3 of 23)	-21218	NM_001256568	8495	Hs.655714	NM_003621	HPRD:04391	PPFIBP2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding
19-PTNLD28-TUMOR_peak_93331	chr7	74144579	74144797	+	25.87300	NA	intron (NM_033001, intron 13 of 33)	intron (NM_033001, intron 13 of 33)	-1432	NR_110044	101926943	Hs.654772	NR_110044	ENSG00000232729	LOC101926943	-	uncharacterized LOC101926943	ncRNA
19-PTNLD28-TUMOR_peak_10581	chr1	228073473	228073827	+	25.85537	NA	Intergenic	Intergenic	55734	NR_049806	100847072		NR_049806		MIR5008	-	microRNA 5008	ncRNA
19-PTNLD28-TUMOR_peak_55135	chr2	114552667	114552958	+	25.84815	NA	Intergenic	LTR16A|LTR|ERVL	-38412	NM_025181	80255	Hs.608286	NM_025181	HPRD:11579	SLC35F5	-	solute carrier family 35, member F5	protein-coding
19-PTNLD28-TUMOR_peak_23141	chr12	13054440	13054678	+	25.83219	NA	intron (NM_003979, intron 1 of 3)	L2b|LINE|L2	10603	NM_003979	9052	Hs.631733	NM_003979		GPRC5A	GPCR5A|RAI3|RAIG1	G protein-coupled receptor, class C, group 5, member A	protein-coding
19-PTNLD28-TUMOR_peak_89125	chr6	112032772	112032973	+	25.81784	NA	intron (NM_153047, intron 2 of 10)	intron (NM_153047, intron 2 of 10)	8393	NM_153047	2534	Hs.390567	NM_002037	HPRD:00655	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_104228	chr9	87207673	87208142	+	25.81736	NA	Intergenic	MER103C|DNA|hAT-Charlie	-75466	NM_001291937	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_30158	chr14	50019159	50019330	+	25.81736	NA	Intergenic	AluY|SINE|Alu	33890	NM_001032	6235	Hs.156367	NM_001032	HPRD:04698	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
19-PTNLD28-TUMOR_peak_46295	chr18	73977804	73978103	+	25.81736	NA	Intergenic	Intergenic	143000	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
19-PTNLD28-TUMOR_peak_21250	chr11	113527830	113527953	+	25.81484	NA	Intergenic	L1PA3|LINE|L1	49204	NR_110047	80975	Hs.46720	NM_030770	HPRD:05995	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
19-PTNLD28-TUMOR_peak_85772	chr6	19121792	19122136	+	25.81484	NA	intron (NR_110860, intron 6 of 10)	PrimLTR79|LTR|ERV1	58747	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_21069	chr11	110079762	110080277	+	25.81200	NA	intron (NM_001260492, intron 14 of 15)	L1PA2|LINE|L1	87418	NM_001260495	5962	Hs.263671	NM_002906	HPRD:01534	RDX	DFNB24	radixin	protein-coding
19-PTNLD28-TUMOR_peak_30472	chr14	56355793	56356216	+	25.81200	NA	Intergenic	Intergenic	-92612	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
19-PTNLD28-TUMOR_peak_62598	chr20	62248538	62248720	+	25.81200	NA	intron (NM_012384, intron 2 of 9)	MLT1A|LTR|ERVL-MaLR	9752	NM_012384	26205	Hs.473286	NM_012384	HPRD:16245	GMEB2	P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_21263	chr11	113648783	113649038	+	25.80954	NA	Intergenic	Intergenic	-1608	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
19-PTNLD28-TUMOR_peak_86385	chr6	29629667	29629860	+	25.80301	NA	intron (NM_206810, intron 2 of 6).5	intron (NM_206810, intron 2 of 6).5	5005	NM_206809	4340	Hs.141308	NM_002433	HPRD:11831	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_56482	chr2	158372044	158372270	+	25.80301	NA	Intergenic	L1PA2|LINE|L1	-71553	NM_004288	9595	Hs.270	NM_004288	HPRD:09192	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_8201	chr1	172321546	172321853	+	25.79952	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-68129	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_70701	chr3	129065593	129066139	+	25.78069	NA	Intergenic	Intergenic	-30746	NM_006026	8971	Hs.75307	NM_006026	HPRD:04151	H1FX	H1X	H1 histone family, member X	protein-coding
19-PTNLD28-TUMOR_peak_19674	chr11	69402472	69402746	+	25.78031	NA	Intergenic	Intergenic	-53264	NM_053056	595	Hs.523852	NM_053056	HPRD:01346	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
19-PTNLD28-TUMOR_peak_60975	chr20	37287667	37287803	+	25.78031	NA	Intergenic	Intergenic	57158	NM_001164431	343578	Hs.451997	NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
19-PTNLD28-TUMOR_peak_108941	chrX	96818620	96818903	+	25.78031	NA	intron (NR_125391, intron 1 of 2)	CR1_Mam|LINE|CR1	773	NR_125391	10824	Hs.654372	NR_125391		DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109479	chrX	131295578	131295767	+	25.78031	NA	Intergenic	L1PA2|LINE|L1	-33622	NM_194277	90167	Hs.170776	NM_194277	HPRD:06624	FRMD7	NYS|NYS1|XIPAN	FERM domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_62238	chr20	55766086	55766251	+	25.78031	NA	intron (NM_001719, intron 3 of 6)	intron (NM_001719, intron 3 of 6)	-22584	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99052	chr8	67454123	67454533	+	25.78024	NA	Intergenic	Intergenic	48837	NM_152765	254778	Hs.268869	NM_152765	HPRD:14565	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_96813	chr7_gl000195_random	121106	121350	+	25.78024	NA	Intergenic	Intergenic	-34509	NM_001242480	389831	Hs.743984	NM_001242480		LOC389831	-	uncharacterized LOC389831	protein-coding
19-PTNLD28-TUMOR_peak_74501	chr4	10458385	10458575	+	25.76657	NA	intron (NM_053042, intron 1 of 2)	CpG	552	NM_053042	85460	Hs.455089	NM_053042	HPRD:13889	ZNF518B	-	zinc finger protein 518B	protein-coding
19-PTNLD28-TUMOR_peak_61372	chr20	44562394	44562604	+	25.76583	NA	promoter-TSS (NM_022104)	promoter-TSS (NM_022104)	-818	NM_022104	63935	Hs.472856	NM_022104	HPRD:12779	PCIF1	C20orf67|PPP1R121	PDX1 C-terminal inhibiting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_9680	chr1	205902777	205903249	+	25.76545	NA	intron (NM_134325, intron 2 of 21)	intron (NM_134325, intron 2 of 21)	9575	NM_134325	115019	Hs.164073	NM_052934	HPRD:12242	SLC26A9	-	solute carrier family 26 (anion exchanger), member 9	protein-coding
19-PTNLD28-TUMOR_peak_52506	chr2	45303389	45303504	+	25.73178	NA	Intergenic	L1PA2|LINE|L1	-66904	NM_016932	10736	Hs.101937	NM_016932	HPRD:05408	SIX2	-	SIX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_51536	chr2	23603683	23603859	+	25.72361	NA	Intergenic	Intergenic	-4527	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_62166	chr20	54579121	54579315	+	25.72171	NA	exon (NM_080617, exon 1 of 3)	exon (NM_080617, exon 1 of 3)	1310	NM_080617	140689	Hs.126141	NM_080617	HPRD:16685	CBLN4	CBLNL1	cerebellin 4 precursor	protein-coding
19-PTNLD28-TUMOR_peak_21757	chr11	122701608	122701934	+	25.72171	NA	Intergenic	HERVH-int|LTR|ERV1	-7484	NM_019604	56253	Hs.159523	NM_019604	HPRD:16760	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
19-PTNLD28-TUMOR_peak_11395	chr1	244394914	244395302	+	25.71198	NA	Intergenic	Intergenic	-120829	NM_001276349	200159	Hs.442703	NM_001012970	HPRD:13168	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
19-PTNLD28-TUMOR_peak_80793	chr5	76055455	76055631	+	25.70072	NA	Intergenic	Intergenic	43675	NM_001992	2149	Hs.482562	NM_001992	HPRD:01763	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II (thrombin) receptor	protein-coding
19-PTNLD28-TUMOR_peak_33985	chr15	64943739	64944079	+	25.70072	NA	intron (NM_015042, intron 2 of 8)	intron (NM_015042, intron 2 of 8)	51571	NM_001301302	4947	Hs.744924	NM_002537	HPRD:11966	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
19-PTNLD28-TUMOR_peak_77890	chr4	163444356	163444704	+	25.70072	NA	Intergenic	Intergenic	-359344	NM_001128427	56884	Hs.32452	NM_020116	HPRD:10998	FSTL5	-	follistatin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_72307	chr3	170860844	170861235	+	25.70072	NA	intron (NM_001161565, intron 12 of 30)	intron (NM_001161565, intron 12 of 30)	-36491	NR_030295	693154		NR_030295		MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
19-PTNLD28-TUMOR_peak_39472	chr16	89641082	89641316	+	25.69668	NA	promoter-TSS (NM_153636)	promoter-TSS (NM_153636)	-977	NM_014427	27132	Hs.461775	NM_014427	HPRD:05749	CPNE7	-	copine VII	protein-coding
19-PTNLD28-TUMOR_peak_37745	chr16	50227552	50227828	+	25.66737	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	40861	NM_001040285	64282	Hs.514342	NM_022447	HPRD:16119	PAPD5	TRF4-2	PAP associated domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_88552	chr6	83924986	83925127	+	25.66737	NA	intron (NM_002395, intron 13 of 13)	MER20|DNA|hAT-Charlie	-21401	NM_001199917	5238	Hs.661665	NM_015599	HPRD:01390	PGM3	AGM1|IMD23|PAGM|PGM 3	phosphoglucomutase 3	protein-coding
19-PTNLD28-TUMOR_peak_105851	chr9	123975609	123975784	+	25.66737	NA	Intergenic	Intergenic	-11331	NM_016322	51552	Hs.371563	NM_016322	HPRD:06693	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_79404	chr5	33602119	33602307	+	25.66737	NA	intron (NM_030955, intron 16 of 23)	intron (NM_030955, intron 16 of 23)	161331	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_52749	chr2	51230773	51231039	+	25.66737	NA	intron (NM_004801, intron 2 of 21)	GA-rich|Low_complexity|Low_complexity	28768	NM_004801	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_23543	chr12	27856703	27856891	+	25.66737	NA	Intergenic	Intergenic	-6909	NM_021821	60488	Hs.714076	NM_021821	HPRD:11373	MRPS35	MDS023|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding
19-PTNLD28-TUMOR_peak_89552	chr6	135078986	135079302	+	25.66737	NA	Intergenic	AluJr|SINE|Alu	192116	NM_170771	64577	Hs.486520	NM_022568	HPRD:06974	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_2469	chr1	37172889	37173125	+	25.66365	NA	Intergenic	Intergenic	-224092	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_106258	chr9	131033496	131033661	+	25.65421	NA	intron (NM_004486, intron 2 of 25)	intron (NM_004486, intron 2 of 25)	4690	NM_004486	2801	Hs.155827	NM_004486	HPRD:03989	GOLGA2	GM130	golgin A2	protein-coding
19-PTNLD28-TUMOR_peak_89684	chr6	139349666	139349947	+	25.65421	NA	promoter-TSS (NM_021243)	promoter-TSS (NM_021243)	-13	NM_021243	58527	Hs.600861	NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_56357	chr2	153263837	153263998	+	25.64652	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	72166	NM_052905	114793	Hs.654630	NM_052905	HPRD:13545	FMNL2	FHOD2	formin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_104710	chr9	97460359	97460618	+	25.64652	NA	Intergenic	Intergenic	-28463	NM_032823	84909	Hs.434253	NM_032823	HPRD:07476	C9orf3	AOPEP|AP-O|APO|C90RF3|ONPEP	chromosome 9 open reading frame 3	protein-coding
19-PTNLD28-TUMOR_peak_90377	chr6	160675831	160676121	+	25.64652	NA	intron (NM_003058, intron 2 of 10)	intron (NM_003058, intron 2 of 10)	3987	NM_003058	6582	Hs.436385	NM_003058	HPRD:04008	SLC22A2	OCT2	solute carrier family 22 (organic cation transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_74506	chr4	10531006	10531136	+	25.64652	NA	intron (NM_052964, intron 12 of 18)	intron (NM_052964, intron 12 of 18)	-72039	NM_053042	85460	Hs.455089	NM_053042	HPRD:13889	ZNF518B	-	zinc finger protein 518B	protein-coding
19-PTNLD28-TUMOR_peak_105028	chr9	103453404	103453619	+	25.64424	NA	Intergenic	L1PA2|LINE|L1	113150	NM_001018116	347273	Hs.99004	NM_001018116	HPRD:18599	MURC	CAVIN4|cavin-4	muscle-related coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_48428	chr19	30250975	30251334	+	25.64424	NA	Intergenic	Intergenic	-44458	NM_001256047	83636	Hs.529094	NM_031448		C19orf12	NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_2850	chr1	41958846	41959047	+	25.63824	NA	Intergenic	Intergenic	-8602	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_47968	chr19	17961280	17961635	+	25.63065	NA	Intergenic	Intergenic	-2616	NM_000215	3718	Hs.515247	NM_000215	HPRD:02547	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_19064	chr11	63342065	63342304	+	25.62903	NA	3' UTR (NM_007069, exon 4 of 4)	3' UTR (NM_007069, exon 4 of 4)	-11329	NM_017878	54979	Hs.272805	NM_017878	HPRD:13670	HRASLS2	PLA1/2-2	HRAS-like suppressor 2	protein-coding
19-PTNLD28-TUMOR_peak_12879	chr10	34090749	34090957	+	25.62903	NA	Intergenic	Intergenic	-29245	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_16811	chr11	4647504	4647824	+	25.62903	NA	Intergenic	Intergenic	-13281	NM_001004751	390038	Hs.553728	NM_001004751	HPRD:14995	OR51D1	OR11-14|OR51D1Q	olfactory receptor, family 51, subfamily D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_100693	chr8	126540999	126541274	+	25.62812	NA	Intergenic	Intergenic	96685	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_27210	chr12	131622417	131622612	+	25.59926	NA	intron (NM_198827, intron 23 of 24)	intron (NM_198827, intron 23 of 24)	-27042	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_103138	chr9	40672601	40672815	+	25.59926	NA	Intergenic	Intergenic	-27583	NM_001083124	727830	Hs.632078	NM_001083124	ENSG00000147926	SPATA31A3	FAM75A3	SPATA31 subfamily A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_70594	chr3	127773318	127773465	+	25.58237	NA	intron (NM_013336, intron 2 of 11)	intron (NM_013336, intron 2 of 11)	2179	NM_013336	29927	Hs.518236	NM_013336	HPRD:15316	SEC61A1	HSEC61|SEC61|SEC61A	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55989	chr2	138091056	138091496	+	25.58087	NA	intron (NM_001080427, intron 11 of 26)	intron (NM_001080427, intron 11 of 26)	342814	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_60949	chr20	36899588	36899846	+	25.57686	NA	intron (NR_104170, intron 1 of 1)	intron (NR_104170, intron 1 of 1)	-10543	NM_001029864	85449	Hs.472690	NM_001029864	ENSG00000149633	KIAA1755	-	KIAA1755	protein-coding
19-PTNLD28-TUMOR_peak_38050	chr16	57537330	57537636	+	25.57650	NA	Intergenic	Intergenic	-17098	NM_018110	55715	Hs.279832	NM_018110	HPRD:16316	DOK4	-	docking protein 4	protein-coding
19-PTNLD28-TUMOR_peak_73233	chr3	191439801	191440001	+	25.57650	NA	Intergenic	MER68|LTR|ERVL	260949	NM_001083308	152138	Hs.690618	NM_001083308	ENSG00000253548	PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_37791	chr16	50913834	50914179	+	25.57650	NA	Intergenic	Intergenic	-137663	NR_110913	101927334	Hs.555184	NR_110913		LOC101927334	-	uncharacterized LOC101927334	ncRNA
19-PTNLD28-TUMOR_peak_96384	chr7	151105947	151106218	+	25.57530	NA	promoter-TSS (NR_034013)	promoter-TSS (NR_034013)	-165	NR_034012	100131176	Hs.659231	NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40528	chr17	19078869	19078989	+	25.57530	NA	Intergenic	Intergenic	-16744	NM_001291905	388436	Hs.677375	NM_001291905		LOC388436	-	uncharacterized protein ENSP00000382042	protein-coding
19-PTNLD28-TUMOR_peak_22823	chr12	6982959	6983149	+	25.56416	NA	promoter-TSS (NM_032641)	promoter-TSS (NM_032641)	-533	NM_032641	84727	Hs.479856	NM_032641	HPRD:13610	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
19-PTNLD28-TUMOR_peak_29033	chr13	110521977	110522256	+	25.56214	NA	Intergenic	CpG	-83202	NM_003749	8660	Hs.442344	NM_003749	HPRD:02878	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
19-PTNLD28-TUMOR_peak_84183	chr5	174975819	174976394	+	25.56214	NA	Intergenic	LTR45|LTR|ERV1	70592	NM_022754	94081	Hs.369440	NM_022754	HPRD:18044	SFXN1	-	sideroflexin 1	protein-coding
19-PTNLD28-TUMOR_peak_11884	chr10	6609984	6610194	+	25.56214	NA	intron (NM_001282644, intron 1 of 17)	AluSz|SINE|Alu	12174	NM_001282644	5588	Hs.498570	NM_006257	HPRD:02710	PRKCQ	PRKCT|nPKC-theta	protein kinase C, theta	protein-coding
19-PTNLD28-TUMOR_peak_104743	chr9	97699910	97700069	+	25.56214	NA	intron (NM_001193329, intron 6 of 15)	L2c|LINE|L2	-127643	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_21515	chr11	118530246	118530520	+	25.56214	NA	intron (NM_001301065, intron 10 of 13)	intron (NM_001301065, intron 10 of 13)	15665	NR_106773	102466719		NR_106773		MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
19-PTNLD28-TUMOR_peak_10779	chr1	230404723	230404902	+	25.56214	NA	intron (NM_001291866, intron 14 of 15)	intron (NM_001291866, intron 14 of 15)	156862	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_102849	chr9	35477307	35477501	+	25.55627	NA	intron (NR_003581, intron 14 of 17)	intron (NR_003581, intron 14 of 17)	-12545	NM_014806	9853	Hs.493796	NM_014806	HPRD:18009	RUSC2	Iporin	RUN and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_23669	chr12	32287432	32287652	+	25.55627	NA	intron (NM_001003398, intron 1 of 8)	L3|LINE|CR1	27357	NM_001714	636	Hs.505202	NM_001714	HPRD:03730	BICD1	BICD	bicaudal D homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_56266	chr2	150590647	150590805	+	25.55627	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-146396	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_88912	chr6	103944493	103944650	+	25.55627	NA	Intergenic	L1PA3|LINE|L1	1363223	NR_104424	57531	Hs.434340	NM_020771	HPRD:17086	HACE1	-	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_49199	chr19	42377291	42377472	+	25.54493	NA	Intergenic	Intergenic	3684	NR_106855	102465478		NR_106855		MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
19-PTNLD28-TUMOR_peak_11020	chr1	234797115	234797294	+	25.54493	NA	Intergenic	Intergenic	32147	NR_033927	100302691	Hs.209162	NR_033927	ENSG00000224939	LINC00184	HANC|NCRNA00184	long intergenic non-protein coding RNA 184	ncRNA
19-PTNLD28-TUMOR_peak_45000	chr18	24120128	24120322	+	25.53703	NA	intron (NM_001258222, intron 1 of 4)	intron (NM_001258222, intron 1 of 4)	8275	NM_001142730	284252	Hs.526630	NM_198991	HPRD:11059	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_47542	chr19	13803057	13803231	+	25.53703	NA	Intergenic	Charlie24|DNA|hAT-Charlie	-55609	NM_030818	81576	Hs.24998	NM_030818	HPRD:11304	CCDC130	-	coiled-coil domain containing 130	protein-coding
19-PTNLD28-TUMOR_peak_70283	chr3	123977041	123977261	+	25.50896	NA	intron (NM_001024660, intron 3 of 59)	L2|LINE|L2	-116028	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_67116	chr3	22876602	22876820	+	25.49886	NA	Intergenic	LTR54|LTR|ERV1	-368073	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_91710	chr7	26118613	26118765	+	25.49886	NA	Intergenic	Intergenic	-73158	NM_004289	9603	Hs.404741	NM_004289	HPRD:09162	NFE2L3	NRF3	nuclear factor, erythroid 2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_96966	chr8	7276002	7276212	+	25.49886	NA	Intergenic	Intergenic	-1753	NM_001205266	100289462	Hs.740237	NM_001205266	ENSG00000177257	DEFB4B	DEFB4P	defensin, beta 4B	protein-coding
19-PTNLD28-TUMOR_peak_24476	chr12	53746468	53746713	+	25.49886	NA	Intergenic	Intergenic	-8013	NM_001300837	121340	Hs.209402	NM_152860	HPRD:05971	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_106060	chr9	127580932	127581264	+	25.49883	NA	Intergenic	Intergenic	17945	NM_001282715	169611	Hs.357004	NM_182487	HPRD:14876	OLFML2A	PRO34319	olfactomedin-like 2A	protein-coding
19-PTNLD28-TUMOR_peak_103385	chr9	47185631	47185927	+	25.47834	NA	Intergenic	L1MC4|LINE|L1	421988	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_2618	chr1	39558137	39558290	+	25.47834	NA	intron (NM_012090, intron 1 of 92)	MER91C|DNA|hAT-Tip100	8374	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_43887	chr17	78253815	78254099	+	25.47834	NA	intron (NM_020954, intron 3 of 16)	intron (NM_020954, intron 3 of 16)	19297	NM_020954	57674	Hs.195642	NM_020914	HPRD:10716	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_102344	chr9	18268505	18268735	+	25.44562	NA	Intergenic	Intergenic	-205459	NM_052866	92949	Hs.741483	NM_052866	HPRD:16462	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS-like 1	protein-coding
19-PTNLD28-TUMOR_peak_48680	chr19	35959705	35959894	+	25.44562	NA	Intergenic	Intergenic	19182	NM_005306	2867	Hs.248056	NM_005306	HPRD:04824	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_54363	chr2	98139782	98139942	+	25.44562	NA	exon (NM_025190, exon 36 of 44)	exon (NM_025190, exon 36 of 44)	-45038	NR_103732	100506076	Hs.732616	NR_103732		LOC100506076	-	uncharacterized LOC100506076	ncRNA
19-PTNLD28-TUMOR_peak_83430	chr5	154909673	154909906	+	25.44330	NA	Intergenic	MIR|SINE|MIR	516529	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
19-PTNLD28-TUMOR_peak_94685	chr7	105447151	105447334	+	25.43763	NA	intron (NM_152749, intron 2 of 3)	intron (NM_152749, intron 2 of 3)	69789	NM_020725	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_25281	chr12	71693866	71694064	+	25.43763	NA	Intergenic	Intergenic	-139585	NM_003667	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_74028	chr4	3882388	3882570	+	25.43593	NA	Intergenic	Intergenic	74669	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_82829	chr5	141990761	141990932	+	25.42181	NA	intron (NM_001257212, intron 2 of 3)	intron (NM_001257212, intron 2 of 3)	2880	NM_033137	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_46464	chr19	155228	155381	+	25.40991	NA	Intergenic	Intergenic	44625	NM_001005240	81099	Hs.572591	NM_001005240		OR4F17	OR4F11P|OR4F18|OR4F19	olfactory receptor, family 4, subfamily F, member 17	protein-coding
19-PTNLD28-TUMOR_peak_103245	chr9	43027692	43027919	+	25.40991	NA	non-coding (NR_026759, exon 5 of 5).2	non-coding (NR_026759, exon 5 of 5).2	5507	NR_026759	100133036	Hs.584289	NR_026759	ENSG00000223839	FAM95B1	-	family with sequence similarity 95, member B1	ncRNA
19-PTNLD28-TUMOR_peak_74241	chr4	7208321	7208485	+	25.40420	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	14029	NM_020777	57537	Hs.479099	NM_020777	HPRD:12099	SORCS2	-	sortilin-related VPS10 domain containing receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_53316	chr2	69951910	69952050	+	25.39943	NA	Intergenic	Intergenic	-17147	NM_001153	307	Hs.422986	NM_001153	HPRD:00112	ANXA4	ANX4|HEL-S-274|PIG28|ZAP36	annexin A4	protein-coding
19-PTNLD28-TUMOR_peak_53421	chr2	71902523	71902693	+	25.39943	NA	intron (NM_003494, intron 51 of 54)	intron (NM_003494, intron 51 of 54)	208776	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_57766	chr2	201606231	201606493	+	25.39943	NA	intron (NR_001557, intron 7 of 30)	intron (NR_001557, intron 7 of 30)	-6462	NR_037886	100507140	Hs.382116	NR_037886	ENSG00000237166	LOC100507140	-	uncharacterized LOC100507140	ncRNA
19-PTNLD28-TUMOR_peak_103116	chr9	39856927	39857162	+	25.39943	NA	Intergenic	MER67D|LTR|ERV1	-27898	NM_001085452	647060	Hs.575677	NM_001040065	ENSG00000204848	SPATA31A1	C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2	SPATA31 subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_88111	chr6	56355879	56356077	+	25.39943	NA	intron (NM_183380, intron 76 of 93)	intron (NM_183380, intron 76 of 93)	151716	NM_015548	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_103096	chr9	39327681	39327916	+	25.39943	NA	Intergenic	MER67D|LTR|ERV1	-27868	NM_001085452	647060	Hs.575677	NM_001040065	ENSG00000204848	SPATA31A1	C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2	SPATA31 subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_72933	chr3	186258413	186258607	+	25.39943	NA	intron (NM_017541, intron 1 of 2)	intron (NM_017541, intron 1 of 2)	3657	NM_017541	1427	Hs.376209	NM_017541		CRYGS	CRYG8|CTRCT20	crystallin, gamma S	protein-coding
19-PTNLD28-TUMOR_peak_39933	chr17	6882206	6882656	+	25.39943	NA	Intergenic	AluY|SINE|Alu	-16953	NM_000697	239	Hs.654431	NM_000697	HPRD:01066	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_53594	chr2	75053303	75053505	+	25.39943	NA	Intergenic	AluY|SINE|Alu	-6378	NM_000189	3099	Hs.406266	NM_000189	HPRD:03080	HK2	HKII|HXK2	hexokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_36583	chr16	18619835	18619996	+	25.39943	NA	Intergenic	L1PA3|LINE|L1	37345	NR_003569	653190	Hs.13188	NR_003569	ENSG00000256340	ABCC6P1	-	ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)	pseudo
19-PTNLD28-TUMOR_peak_100263	chr8	118922325	118922491	+	25.39487	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	201650	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_70162	chr3	122452202	122452333	+	25.39487	NA	Intergenic	L1PA4|LINE|L1	52595	NM_017554	54625	Hs.518203	NM_017554	HPRD:11421	PARP14	ARTD8|BAL2|PARP-14|pART8	poly (ADP-ribose) polymerase family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_85162	chr6	7425093	7425508	+	25.39487	NA	Intergenic	Intergenic	22420	NM_153005	83732	Hs.437474	NM_031480	HPRD:17978	RIOK1	AD034|RRP10|bA288G3.1	RIO kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_62542	chr20	61506944	61507154	+	25.38404	NA	Intergenic	ERVL-E-int|LTR|ERVL	-13934	NM_006602	10732	Hs.126248	NM_006602	HPRD:05297	TCFL5	CHA|E2BP-1|Figlb|bHLHe82	transcription factor-like 5 (basic helix-loop-helix)	protein-coding
19-PTNLD28-TUMOR_peak_3530	chr1	53326333	53326528	+	25.37811	NA	exon (NM_001004339, exon 4 of 14)	exon (NM_001004339, exon 4 of 14)	18247	NM_001004339	440590	Hs.658458	NM_001004339	HPRD:17399	ZYG11A	ZYG11	zyg-11 family member A, cell cycle regulator	protein-coding
19-PTNLD28-TUMOR_peak_93369	chr7	74631303	74631488	+	25.37811	NA	intron (NR_002206, intron 3 of 23).2	intron (NR_002206, intron 3 of 23).2	22064	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1156	chr1	17560288	17560548	+	25.37811	NA	intron (NM_013358, intron 11 of 15)	intron (NM_013358, intron 11 of 15)	-15175	NM_016233	51702	Hs.149195	NM_016233	HPRD:08419	PADI3	PAD3|PDI3	peptidyl arginine deiminase, type III	protein-coding
19-PTNLD28-TUMOR_peak_46879	chr19	5990536	5990770	+	25.36625	NA	intron (NR_046376, intron 1 of 3)	intron (NR_046376, intron 1 of 3)	12239	NR_046376	100128568	Hs.624525	NR_046376	ENSG00000266983	LOC100128568	-	uncharacterized LOC100128568	ncRNA
19-PTNLD28-TUMOR_peak_52790	chr2	54188710	54189228	+	25.35533	NA	intron (NM_014614, intron 1 of 46)	LTR10C|LTR|ERV1	9008	NM_014614	23198	Hs.413801	NM_014614	HPRD:09652	PSME4	PA200	proteasome (prosome, macropain) activator subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_81273	chr5	96406877	96407127	+	25.35533	NA	Intergenic	MER57B1|LTR|ERV1	71518	NM_153234	167410	Hs.656702	NM_153234	HPRD:08069	LIX1	C5orf11	Lix1 homolog (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_45946	chr18	56199650	56199839	+	25.35533	NA	intron (NM_052947, intron 5 of 12)	intron (NM_052947, intron 5 of 12)	-81360	NR_039899	100616357		NR_039899		MIR3591	-	microRNA 3591	ncRNA
19-PTNLD28-TUMOR_peak_39635	chr17	1553173	1553524	+	25.35172	NA	promoter-TSS (NM_031430)	promoter-TSS (NM_031430)	44	NM_031430	83547	Hs.534497	NM_031430	HPRD:09706	RILP	-	Rab interacting lysosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_42083	chr17	46876858	46877102	+	25.34531	NA	exon (NM_001130918, exon 6 of 16)	exon (NM_001130918, exon 6 of 16)	-5294	NM_173623	284076	Hs.91930	NM_173623	HPRD:08763	TTLL6	TTL.6	tubulin tyrosine ligase-like family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_4836	chr1	91630926	91631058	+	25.33688	NA	Intergenic	Intergenic	-143180	NM_032186	84146	Hs.173001	NM_016620	HPRD:15885	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
19-PTNLD28-TUMOR_peak_76657	chr4	113473880	113474080	+	25.33688	NA	intron (NM_018392, intron 22 of 27)	MLT1H|LTR|ERVL-MaLR	-36652	NM_024019	63973	Hs.744415	NM_024019	HPRD:06976	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
19-PTNLD28-TUMOR_peak_31675	chr14	91317420	91317577	+	25.33688	NA	Intergenic	AluY|SINE|Alu	-34737	NM_001010854	145567	Hs.655697	NM_001010854	HPRD:18503	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
19-PTNLD28-TUMOR_peak_71425	chr3	142838525	142838704	+	25.31644	NA	promoter-TSS (NM_004267)	promoter-TSS (NM_004267)	-4	NM_004267	9435	Hs.8786	NM_004267		CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_96619	chr7	155172931	155173130	+	25.31288	NA	Intergenic	Intergenic	-12402	NR_103545	338436	Hs.521326	NR_103545	ENSG00000204960	BLACE	-	B-cell acute lymphoblastic leukemia expressed	ncRNA
19-PTNLD28-TUMOR_peak_62071	chr20	52370023	52370361	+	25.31266	NA	Intergenic	Intergenic	122056	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_102174	chr9	10612769	10613153	+	25.31215	NA	promoter-TSS (NM_002839)	promoter-TSS (NM_002839)	-238	NM_002839	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_101732	chr8	145329396	145329600	+	25.30808	NA	Intergenic	Intergenic	8037	NM_001080514	642658	Hs.553250	NM_001008271	ENSG00000187786	SCX	SCXA|SCXB|bHLHa48	scleraxis basic helix-loop-helix transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_96442	chr7	151685246	151685611	+	25.30123	NA	intron (NR_033169, intron 6 of 9)	intron (NR_033169, intron 6 of 9)	31964	NR_033169	168391	Hs.647077	NM_145292	HPRD:13565	GALNTL5	GALNACT19|GALNT15|GalNAc-T5L	polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding
19-PTNLD28-TUMOR_peak_26198	chr12	109823134	109823466	+	25.30105	NA	Intergenic	AluJb|SINE|Alu	-3224	NM_001101421	283446	Hs.512008	NM_173597	HPRD:08227	MYO1H	-	myosin IH	protein-coding
19-PTNLD28-TUMOR_peak_65517	chr22	39077766	39078287	+	25.30105	NA	promoter-TSS (NM_020243)	promoter-TSS (NM_020243)	72	NM_020243	56993	Hs.595072	NM_020243	HPRD:06130	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_89995	chr6	150849879	150850069	+	25.30105	NA	Intergenic	Intergenic	-71025	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_97880	chr8	27976058	27976210	+	25.30105	NA	intron (NM_001284224, intron 5 of 12)	intron (NM_001284224, intron 5 of 12)	25550	NM_001284225	55140	Hs.491336	NM_018091	HPRD:10936	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_58615	chr2	224624374	224624578	+	25.30105	NA	intron (NR_110906, intron 3 of 3)	L1PA13|LINE|L1	77843	NR_110906	130340	Hs.632555	NM_178814	HPRD:16495	AP1S3	-	adaptor-related protein complex 1, sigma 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_35785	chr16	2244993	2245181	+	25.29591	NA	intron (NM_020764, intron 1 of 19)	MIRb|SINE|MIR	1378	NM_020764	57524	Hs.643537	NM_020764	HPRD:10809	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_48056	chr19	18485189	18485457	+	25.29591	NA	Intergenic	Intergenic	-11645	NM_004864	9518	Hs.616962	NM_004864	HPRD:05608	GDF15	GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
19-PTNLD28-TUMOR_peak_44448	chr18	8341652	8342222	+	25.29591	NA	intron (NM_001105244, intron 22 of 32)	intron (NM_001105244, intron 22 of 32)	25095	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
19-PTNLD28-TUMOR_peak_9491	chr1	204073501	204074045	+	25.28982	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	31527	NM_005686	9580	Hs.201671	NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY (sex determining region Y)-box 13	protein-coding
19-PTNLD28-TUMOR_peak_39546	chr16	90281823	90281980	+	25.28151	NA	Intergenic	Intergenic	-139563	NM_001098173	11105	Hs.406695	NM_052996	HPRD:17903	PRDM7	PFM4|ZNF910	PR domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_59357	chr2	243153798	243153997	+	25.26791	NA	Intergenic	TAR1|Satellite|telo	123053	NR_024437	728323	Hs.471887	NR_024437		LOC728323	-	uncharacterized LOC728323	ncRNA
19-PTNLD28-TUMOR_peak_25512	chr12	88692540	88692910	+	25.26562	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	156652	NM_181783	160418	Hs.331268	NM_181783	HPRD:10243	TMTC3	SMILE	transmembrane and tetratricopeptide repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_21846	chr11	124408003	124408323	+	25.26562	NA	Intergenic	Intergenic	5387	NM_001005195	219858	Hs.553634	NM_001005195	HPRD:17785	OR8B12	OR11-317	olfactory receptor, family 8, subfamily B, member 12	protein-coding
19-PTNLD28-TUMOR_peak_99846	chr8	103257532	103257751	+	25.26562	NA	intron (NR_125415, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	5962	NR_125415	101927221	Hs.492445	NR_125415		LOC101927221	-	uncharacterized LOC101927221	ncRNA
19-PTNLD28-TUMOR_peak_22159	chr11	130093094	130093815	+	25.25541	NA	Intergenic	MIR|SINE|MIR	63772	NM_021978	6768	Hs.504315	NM_021978	HPRD:06005	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
19-PTNLD28-TUMOR_peak_37766	chr16	50507384	50507826	+	25.23046	NA	Intergenic	Intergenic	-74636	NM_033119	85407	Hs.187578	NM_033119		NKD1	Naked1	naked cuticle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_67975	chr3	47302857	47303103	+	25.23011	NA	intron (NM_022342, intron 9 of 19)	intron (NM_022342, intron 9 of 19)	-21350	NM_025010	23276	Hs.517946	NM_025010	HPRD:10017	KLHL18	-	kelch-like family member 18	protein-coding
19-PTNLD28-TUMOR_peak_73899	chr4	2395442	2395621	+	25.23011	NA	intron (NM_001172656, intron 1 of 11)	intron (NM_001172656, intron 1 of 11)	24839	NM_001172658	57732	Hs.292056	NM_020972	HPRD:11701	ZFYVE28	LST2|LYST2	zinc finger, FYVE domain containing 28	protein-coding
19-PTNLD28-TUMOR_peak_30757	chr14	64876962	64877471	+	25.23011	NA	intron (NM_005956, intron 2 of 27)	AluJo|SINE|Alu	22457	NM_005956	4522	Hs.652308	NM_005956	HPRD:01403	MTHFD1	MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_60902	chr20	36339543	36339801	+	25.22905	NA	intron (NM_030877, intron 1 of 15)	intron (NM_030877, intron 1 of 15)	17315	NM_030877	56259	Hs.472667	NM_030877	HPRD:10850	CTNNBL1	C20orf33|NAP|P14L|PP8304|dJ633O20.1	catenin, beta like 1	protein-coding
19-PTNLD28-TUMOR_peak_3897	chr1	60747150	60747319	+	25.22905	NA	Intergenic	Intergenic	-207792	NM_152377	127795	Hs.47385	NM_152377	HPRD:11338	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_94828	chr7	108230402	108230654	+	25.22905	NA	Intergenic	Intergenic	-20316	NM_001287599	168451	Hs.707689	NM_182529	HPRD:15498	THAP5	-	THAP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_105500	chr9	115857695	115857870	+	25.22905	NA	Intergenic	LTR43|LTR|ERV1	16175	NR_024376	100128385	Hs.99052	NR_024376	ENSG00000225684	FAM225B	C9orf110|LINC00256B|NCRNA00256B	family with sequence similarity 225, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42618	chr17	57070054	57070390	+	25.22905	NA	intron (NM_001005207, intron 24 of 24)	MER21B|LTR|ERVL	114044	NM_015294	4591	Hs.579079	NM_015294	HPRD:05463	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
19-PTNLD28-TUMOR_peak_51343	chr2	17347875	17348042	+	25.22905	NA	Intergenic	Intergenic	351748	NM_001099218	729475	Hs.515802	NM_001099218	ENSG00000214842	RAD51AP2	-	RAD51 associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_53667	chr2	80059669	80059959	+	25.22563	NA	intron (NM_001282597, intron 3 of 18)	intron (NM_001282597, intron 3 of 18)	33895	NR_107047	102465877		NR_107047		MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
19-PTNLD28-TUMOR_peak_5217	chr1	101823044	101823256	+	25.20329	NA	Intergenic	Intergenic	-16699	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-31P	RNU6-31|RNU6-6	RNA, U6 small nuclear 31, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_89663	chr6	138609890	138610113	+	25.20329	NA	intron (NM_020340, intron 17 of 33)	intron (NM_020340, intron 17 of 33)	-70374	NM_021635	59351	Hs.302016	NM_021635	HPRD:16137	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
19-PTNLD28-TUMOR_peak_63139	chr21	32881792	32882015	+	25.20329	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	49387	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_33499	chr15	48537224	48537379	+	25.20329	NA	intron (NM_001184832, intron 11 of 26)	intron (NM_001184832, intron 11 of 26)	38803	NM_001184832	6557	Hs.123116	NM_000338	HPRD:02908	SLC12A1	BSC1|NKCC2	solute carrier family 12 (sodium/potassium/chloride transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_39879	chr17	5371925	5372500	+	25.17694	NA	5' UTR (NM_020162, exon 1 of 12)	5' UTR (NM_020162, exon 1 of 12)	168	NM_001199699	56919	Hs.250456	NM_020162	HPRD:13143	DHX33	DDX33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding
19-PTNLD28-TUMOR_peak_24398	chr12	53206649	53206818	+	25.17694	NA	intron (NM_002272, intron 1 of 8)	intron (NM_002272, intron 1 of 8)	1167	NM_002272	3851	Hs.654610	NM_002272	HPRD:00478	KRT4	CK-4|CK4|CYK4|K4|WSN1	keratin 4	protein-coding
19-PTNLD28-TUMOR_peak_87348	chr6	40327596	40327827	+	25.17694	NA	Intergenic	L2a|LINE|L2	-3966	NR_038887	401260	Hs.654837	NM_001001705		LINC00951	-	long intergenic non-protein coding RNA 951	ncRNA
19-PTNLD28-TUMOR_peak_6313	chr1	145456097	145456244	+	25.15949	NA	TTS (NM_032305)	TTS (NM_032305)	14217	NM_032305	84265	Hs.591456	NM_032305	HPRD:14546	POLR3GL	RPC32HOM|flj32422	polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like	protein-coding
19-PTNLD28-TUMOR_peak_19821	chr11	71600547	71600711	+	25.15582	NA	intron (NR_029192, intron 6 of 6)	HERVE-int|LTR|ERV1	11130	NM_001242853	100129216	Hs.740246	NM_001242853		LOC100129216	-	beta-defensin 131-like	protein-coding
19-PTNLD28-TUMOR_peak_101281	chr8	137627550	137628023	+	25.14867	NA	Intergenic	Intergenic	798045	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_71877	chr3	155892138	155892314	+	25.12234	NA	intron (NM_003471, intron 1 of 13)	intron (NM_003471, intron 1 of 13)	31475	NM_003471	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_66668	chr3	12576157	12576336	+	25.12234	NA	Intergenic	AluY|SINE|Alu	10717	NM_001195279	100129480	Hs.572974	NM_001195279		MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_107466	chrX	7511107	7511385	+	25.12234	NA	Intergenic	L1PA3|LINE|L1	-299057	NM_013452	26609	Hs.567503	NM_013452	HPRD:02206	VCX	VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1	variable charge, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_3874	chr1	60118833	60118972	+	25.12234	NA	intron (NM_001113411, intron 12 of 16)	L1PA2|LINE|L1	80066	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_96237	chr7	149553062	149553295	+	25.11087	NA	intron (NM_001099220, intron 5 of 7)	intron (NM_001099220, intron 5 of 7)	-16879	NM_145230	155066	Hs.556998	NM_145230	HPRD:12920	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase, H+ transporting V0 subunit e2	protein-coding
19-PTNLD28-TUMOR_peak_65856	chr22	44725145	44725294	+	25.10672	NA	Intergenic	Intergenic	-16488	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
19-PTNLD28-TUMOR_peak_77911	chr4	165063404	165063517	+	25.10672	NA	intron (NM_001166373, intron 1 of 7)	L1PA3|LINE|L1	55403	NM_012403	23520	Hs.661161	NM_012403		ANP32C	PP32R1	acidic (leucine-rich) nuclear phosphoprotein 32 family, member C	protein-coding
19-PTNLD28-TUMOR_peak_58712	chr2	228368222	228368450	+	25.10672	NA	intron (NM_004504, intron 2 of 12)	intron (NM_004504, intron 2 of 12)	31448	NM_001135189	3267	Hs.352962	NM_004504	HPRD:02918	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_30569	chr14	59331509	59331763	+	25.10672	NA	intron (NR_110547, intron 1 of 5)	intron (NR_110547, intron 1 of 5)	36630	NR_110547	102723742	Hs.232734	NR_110547		LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
19-PTNLD28-TUMOR_peak_54104	chr2	91816685	91816866	+	25.10174	NA	Intergenic	Intergenic	31200	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_44453	chr18	8601308	8601603	+	25.08841	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-7988	NM_001025300	201475	Hs.270074	NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_16432	chr11	85598	85751	+	25.08639	NA	Intergenic	Intergenic	46246	NR_028326	100133161	Hs.645398	NR_028326		LINC01001	-	long intergenic non-protein coding RNA 1001	ncRNA
19-PTNLD28-TUMOR_peak_19471	chr11	67113500	67113755	+	25.08639	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	7440	NM_001256870	57804	Hs.523829	NM_021173		POLD4	POLDS|p12	polymerase (DNA-directed), delta 4, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_3003	chr1	43884635	43884830	+	25.08500	NA	intron (NM_015284, intron 7 of 70)	MER58A|DNA|hAT-Charlie	29176	NM_015284	23334	Hs.643560	NM_015284	HPRD:11085	SZT2	C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B	seizure threshold 2 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_41052	chr17	33048398	33048708	+	25.08500	NA	Intergenic	MIR3|SINE|MIR	140785	NM_207313	124842	Hs.310482	NM_207313	HPRD:14030	TMEM132E	-	transmembrane protein 132E	protein-coding
19-PTNLD28-TUMOR_peak_2427	chr1	36714025	36714237	+	25.06802	NA	intron (NM_005119, intron 1 of 11)	AluJr|SINE|Alu	24114	NM_005119	9967	Hs.744057	NM_005119	HPRD:07543	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_84960	chr6	4156163	4156396	+	25.06802	NA	non-coding (NR_103764, exon 4 of 4)	non-coding (NR_103764, exon 4 of 4)	19973	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_99785	chr8	102196724	102196872	+	25.04422	NA	Intergenic	Intergenic	21162	NM_001267708	51123	Hs.374485	NM_016096	HPRD:13688	ZNF706	PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
19-PTNLD28-TUMOR_peak_86450	chr6	30174790	30175232	+	25.04422	NA	intron (NM_003449, intron 1 of 9).8	L2|LINE|L2	6260	NM_003449	7726	Hs.485041	NM_003449	HPRD:02901	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
19-PTNLD28-TUMOR_peak_84800	chr6	2589286	2589803	+	25.04422	NA	Intergenic	L1PB1|LINE|L1	45754	NM_152554	154386	Hs.680574	NM_152554		C6orf195	bA145H9.2	chromosome 6 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_63058	chr21	30449168	30449567	+	25.02005	NA	promoter-TSS (NM_001286623)	promoter-TSS (NM_001286623)	-425	NM_020152	56911	Hs.222802	NM_020152	HPRD:10764	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_15227	chr10	102045841	102046127	+	25.01733	NA	5' UTR (NM_001001342, exon 1 of 4)	5' UTR (NM_001001342, exon 1 of 4)	137	NM_001001342	282991	Hs.34906	NM_173809		BLOC1S2	BLOS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_2346	chr1	35753535	35753718	+	25.01665	NA	intron (NM_005095, intron 1 of 29)	L2|LINE|L2	19058	NM_005095	9202	Hs.269211	NM_005095	HPRD:10326	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger, MYM-type 4	protein-coding
19-PTNLD28-TUMOR_peak_39930	chr17	6772012	6772257	+	25.01665	NA	intron (NR_002710, intron 2 of 13)	intron (NR_002710, intron 2 of 13)	15239	NR_002710	245	Hs.378695	NR_002710		ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_57005	chr2	173850322	173850609	+	25.01665	NA	intron (NM_001282901, intron 6 of 24)	intron (NM_001282901, intron 6 of 24)	57532	NM_001282901	11069	Hs.470646	NM_007023	HPRD:06929	RAPGEF4	2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_100611	chr8	125605250	125605420	+	25.01665	NA	intron (NM_001282974, intron 3 of 13)	intron (NM_001282974, intron 3 of 13)	53992	NM_001278645	4715	Hs.15977	NM_005005	HPRD:03264	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa	protein-coding
19-PTNLD28-TUMOR_peak_16512	chr11	783639	783810	+	25.01665	NA	Intergenic	Intergenic	4270	NR_046316	171391	Hs.711081	NR_046316		NS3BP	-	NS3BP	ncRNA
19-PTNLD28-TUMOR_peak_96830	chr8	115028	115180	+	25.01340	NA	TTS (NM_001005504)	TTS (NM_001005504)	1920	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_62874	chr21	18835847	18836073	+	25.01091	NA	Intergenic	Intergenic	24752	NR_037585	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_63571	chr21	40509161	40509359	+	25.01091	NA	Intergenic	Intergenic	46180	NM_003720	8624	Hs.473838	NM_003720	HPRD:05598	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome (prosome, macropain) assembly chaperone 1	protein-coding
19-PTNLD28-TUMOR_peak_36678	chr16	20224385	20224671	+	25.01091	NA	Intergenic	Intergenic	114307	NM_001007242	2813	Hs.53985	NM_001502	HPRD:04279	GP2	ZAP75	glycoprotein 2 (zymogen granule membrane)	protein-coding
19-PTNLD28-TUMOR_peak_7971	chr1	167197367	167197531	+	25.01091	NA	intron (NM_001198786, intron 1 of 14)	intron (NM_001198786, intron 1 of 14)	7326	NR_037163	5451	Hs.283402	NM_002697	HPRD:01250	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_49236	chr19	42891227	42891659	+	25.00115	NA	intron (NM_032488, intron 3 of 3)	CpG	3001	NM_032488	84518	Hs.148590	NM_032488	HPRD:16729	CNFN	PLAC8L2	cornifelin	protein-coding
19-PTNLD28-TUMOR_peak_34315	chr15	71075919	71076106	+	25.00115	NA	Intergenic	AluJb|SINE|Alu	-20162	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_12804	chr10	32201324	32201520	+	24.99210	NA	intron (NM_001270695, intron 1 of 18)	intron (NM_001270695, intron 1 of 18)	-3568	NM_001270699	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_33667	chr15	56432260	56432388	+	24.99210	NA	intron (NM_022841, intron 4 of 8)	L1PA2|LINE|L1	103159	NM_022841	64864	Hs.745089	NM_022841	HPRD:07807	RFX7	RFXDC2	regulatory factor X, 7	protein-coding
19-PTNLD28-TUMOR_peak_28866	chr13	101471094	101471286	+	24.99210	NA	intron (NR_047687, intron 2 of 7)	intron (NR_047687, intron 2 of 7)	110611	NR_047687	100885778	Hs.602949	NR_047687	ENSG00000233009	NALCN-AS1	-	NALCN antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_110125	chrY	3312043	3312193	+	24.99210	NA	Intergenic	L1HS|LINE|L1	-135008	NM_139214	90655	Hs.112148	NM_139214	HPRD:18512	TGIF2LY	TGIFLY	TGFB-induced factor homeobox 2-like, Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_25878	chr12	103795321	103795483	+	24.99210	NA	non-coding (NR_103526, exon 3 of 11)	non-coding (NR_103526, exon 3 of 11)	94386	NR_103526	374470	Hs.534649	NM_198521	HPRD:13393	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
19-PTNLD28-TUMOR_peak_57283	chr2	182229931	182230100	+	24.99210	NA	Intergenic	MER5B|DNA|hAT-Charlie	-59636	NR_039637	100616213		NR_039637	miRBase:MI0016778	MIR4437	-	microRNA 4437	ncRNA
19-PTNLD28-TUMOR_peak_28726	chr13	96187603	96187857	+	24.99210	NA	intron (NM_182848, intron 1 of 4)	L2c|LINE|L2	-1566	NR_046533	100874194	Hs.569229	NR_046533	ENSG00000223392	CLDN10-AS1	-	CLDN10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_5292	chr1	108267254	108267657	+	24.99210	NA	intron (NM_006113, intron 15 of 26)	L2c|LINE|L2	-36329	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_109028	chrX	103122660	103122791	+	24.99210	NA	Intergenic	L1PA3|LINE|L1	-35513	NM_016370	51209	Hs.522736	NM_016370	HPRD:02237	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_52935	chr2	60487897	60488087	+	24.99210	NA	Intergenic	Intergenic	126588	NR_039631	100616473		NR_039631	miRBase:MI0016772	MIR4432	-	microRNA 4432	ncRNA
19-PTNLD28-TUMOR_peak_93622	chr7	79560120	79560372	+	24.99210	NA	Intergenic	L1PA11|LINE|L1	159674	NR_031667	100313772		NR_031667	miRBase:MI0006400	MIR548M	MIRN548M	microRNA 548m	ncRNA
19-PTNLD28-TUMOR_peak_11552	chr1	248416635	248416767	+	24.99210	NA	Intergenic	L1PA3|LINE|L1	14470	NM_017504	26245	Hs.381309	NM_017504	HPRD:14946	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	olfactory receptor, family 2, subfamily M, member 4	protein-coding
19-PTNLD28-TUMOR_peak_52519	chr2	45662521	45662771	+	24.99210	NA	intron (NM_018079, intron 16 of 20)	L1MEf|LINE|L1	175787	NM_018079	55133	Hs.14229	NM_018079	HPRD:07669	SRBD1	-	S1 RNA binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_106837	chr9	140156768	140156939	+	24.99210	NA	intron (NM_015456, intron 4 of 12)	LTR13|LTR|ERVK	7094	NM_015456	25920	Hs.521809	NM_015456	HPRD:10845	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
19-PTNLD28-TUMOR_peak_49243	chr19	42959937	42960174	+	24.99210	NA	intron (NR_073179, intron 1 of 1)	intron (NR_073179, intron 1 of 1)	-12919	NM_198477	284340	Hs.445586	NM_198477		CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	chemokine (C-X-C motif) ligand 17	protein-coding
19-PTNLD28-TUMOR_peak_25468	chr12	82062346	82062502	+	24.99210	NA	intron (NM_001220474, intron 2 of 30)	intron (NM_001220474, intron 2 of 30)	-70274	NM_001220478	8499	Hs.506216	NM_003625	HPRD:04392	PPFIA2	-	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_89607	chr6	137397777	137397970	+	24.99210	NA	Intergenic	Intergenic	-31556	NM_014432	53832	Hs.445868	NM_014432	HPRD:05729	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_69443	chr3	100228963	100229087	+	24.99210	NA	intron (NM_018004, intron 1 of 5)	L1PA3|LINE|L1	17562	NM_018004	55076	Hs.658956	NM_018004	HPRD:07647	TMEM45A	DERP7	transmembrane protein 45A	protein-coding
19-PTNLD28-TUMOR_peak_25102	chr12	67549737	67550070	+	24.99210	NA	Intergenic	AluJr|SINE|Alu	-59839	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_17882	chr11	33138207	33138403	+	24.99210	NA	intron (NM_001326, intron 3 of 20)	intron (NM_001326, intron 3 of 20)	40609	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	ncRNA
19-PTNLD28-TUMOR_peak_76296	chr4	95341190	95341410	+	24.99210	NA	Intergenic	Intergenic	-31708	NM_001011516	10611	Hs.480311	NM_006457	HPRD:05799	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
19-PTNLD28-TUMOR_peak_63006	chr21	28789358	28789592	+	24.99210	NA	intron (NR_049807, intron 3 of 4)	L1M3c|LINE|L1	-305223	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
19-PTNLD28-TUMOR_peak_45178	chr18	32318564	32318761	+	24.99210	NA	intron (NM_032978, intron 1 of 16)	intron (NM_032978, intron 1 of 16)	-17278	NM_001390	1837	Hs.643454	NM_001390	HPRD:03141	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_82423	chr5	137354633	137354793	+	24.99210	NA	exon (NM_016603, exon 3 of 23)	exon (NM_016603, exon 3 of 23)	14089	NM_016603	51306	Hs.567453	NM_016603	HPRD:06464	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13, member B	protein-coding
19-PTNLD28-TUMOR_peak_40128	chr17	8825853	8826118	+	24.99210	NA	intron (NM_001251851, intron 1 of 18)	intron (NM_001251851, intron 1 of 18)	-10151	NM_014308	23533	Hs.278901	NM_014308	HPRD:11433	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase, regulatory subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_98389	chr8	41228985	41229206	+	24.99210	NA	Intergenic	Intergenic	-62105	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16734	chr11	3361363	3361518	+	24.99210	NA	Intergenic	Intergenic	39012	NM_001242842	7748	Hs.386294	NM_007152	HPRD:03718	ZNF195	HRF1|ZNFP104	zinc finger protein 195	protein-coding
19-PTNLD28-TUMOR_peak_68603	chr3	58449360	58449700	+	24.99210	NA	Intergenic	Intergenic	-28293	NM_001128214	200845	Hs.13982	NM_153331	HPRD:13769	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_91962	chr7	34026977	34027156	+	24.99210	NA	intron (NM_133468, intron 7 of 15)	intron (NM_133468, intron 7 of 15)	82543	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_104618	chr9	95683709	95683864	+	24.99210	NA	Intergenic	Intergenic	-25815	NM_001083536	89846	Hs.411081	NM_033086	HPRD:10957	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_39922	chr17	6569462	6569632	+	24.99210	NA	Intergenic	Intergenic	8509	NR_045985	100652883	Hs.549540	NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_77861	chr4	159969365	159969678	+	24.99210	NA	Intergenic	Intergenic	-13188	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_9866	chr1	209212736	209213149	+	24.99210	NA	Intergenic	Intergenic	-389226	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_33376	chr15	44521417	44521592	+	24.99210	NA	Intergenic	LTR5A|LTR|ERVK	-34012	NR_104455	84978	Hs.578544	NM_032892	HPRD:17493	FRMD5	-	FERM domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_107629	chrX	14954820	14954985	+	24.99210	NA	Intergenic	L2c|LINE|L2	51489	NM_001177475	158747	Hs.744919	NM_152581	HPRD:06642	MOSPD2	-	motile sperm domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_17639	chr11	21493905	21494065	+	24.99210	NA	intron (NM_201551, intron 15 of 18)	intron (NM_201551, intron 15 of 18)	-720737	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_29419	chr14	22643045	22643244	+	24.99210	NA	Intergenic	LTR2B|LTR|ERV1	414999	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_108197	chrX	47662635	47662873	+	24.99210	NA	Intergenic	CpG	-33547	NM_007137	347344	Hs.114246	NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
19-PTNLD28-TUMOR_peak_88897	chr6	100952775	100952935	+	24.99210	NA	Intergenic	Intergenic	-41304	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_23441	chr12	25922161	25922306	+	24.99210	NA	Intergenic	Intergenic	104779	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	ncRNA
19-PTNLD28-TUMOR_peak_27846	chr13	36972262	36972478	+	24.99210	NA	Intergenic	Intergenic	-28053	NM_001142294	23111	Hs.440414	NM_015087	HPRD:06170	SPG20	SPARTIN|TAHCCP1	spastic paraplegia 20 (Troyer syndrome)	protein-coding
19-PTNLD28-TUMOR_peak_52276	chr2	39821000	39821162	+	24.99210	NA	intron (NR_037875, intron 5 of 5)	intron (NR_037875, intron 5 of 5)	-71557	NM_001167959	130733	Hs.40808	NM_152390	HPRD:14577	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
19-PTNLD28-TUMOR_peak_18581	chr11	54714933	54715065	+	24.99210	NA	Intergenic	L1PA2|LINE|L1	-314659	NM_024114	79097	Hs.195715	NM_024114	HPRD:15565	TRIM48	RNF101	tripartite motif containing 48	protein-coding
19-PTNLD28-TUMOR_peak_15896	chr10	120183432	120183595	+	24.99210	NA	Intergenic	Intergenic	66893	NR_108045	100506126	Hs.69494	NR_108045		LINC00867	-	long intergenic non-protein coding RNA 867	ncRNA
19-PTNLD28-TUMOR_peak_45814	chr18	51806357	51806788	+	24.99210	NA	intron (NM_007195, intron 4 of 9)	MSTB1|LTR|ERVL-MaLR	10723	NM_007195	11201	Hs.438533	NM_007195	HPRD:16094	POLI	RAD30B|RAD3OB	polymerase (DNA directed) iota	protein-coding
19-PTNLD28-TUMOR_peak_81148	chr5	91598208	91598350	+	24.99210	NA	Intergenic	L1PA2|LINE|L1	-919130	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_20703	chr11	95617603	95617855	+	24.99210	NA	intron (NM_201278, intron 3 of 16)	MIRb|SINE|MIR	39642	NM_001243571	8898	Hs.181326	NM_016156	HPRD:04650	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_38192	chr16	65104792	65104969	+	24.99210	NA	intron (NM_001797, intron 1 of 12)	intron (NM_001797, intron 1 of 12)	51039	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
19-PTNLD28-TUMOR_peak_76409	chr4	102314471	102314663	+	24.99210	NA	Intergenic	L1MEd|LINE|L1	45633	NR_033874	90024	Hs.534513	NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
19-PTNLD28-TUMOR_peak_87310	chr6	39345375	39345531	+	24.99210	NA	intron (NM_001289020, intron 15 of 21)	intron (NM_001289020, intron 15 of 21)	53697	NM_001289024	221458	Hs.588202	NM_145027	HPRD:10786	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
19-PTNLD28-TUMOR_peak_100118	chr8	111860449	111860608	+	24.99210	NA	Intergenic	Intergenic	179134	NR_125417	101927459	Hs.575543	NR_125416		LOC101927459	-	uncharacterized LOC101927459	ncRNA
19-PTNLD28-TUMOR_peak_18132	chr11	37464201	37464460	+	24.99210	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-844501	NM_001243786	5897	Hs.714519	NM_000536	HPRD:08913	RAG2	RAG-2	recombination activating gene 2	protein-coding
19-PTNLD28-TUMOR_peak_17677	chr11	24984870	24985005	+	24.99210	NA	intron (NM_001009909, intron 7 of 11)	L1PA3|LINE|L1	466421	NM_001252008	338645	Hs.144138	NM_001009909	HPRD:17348	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding
19-PTNLD28-TUMOR_peak_74618	chr4	15843578	15843717	+	24.99210	NA	intron (NM_001775, intron 7 of 7)	L1HS|LINE|L1	63716	NM_001775	952	Hs.479214	NM_001775		CD38	ADPRC 1|T10	CD38 molecule	protein-coding
19-PTNLD28-TUMOR_peak_99684	chr8	100675826	100675995	+	24.99210	NA	intron (NM_152564, intron 35 of 61)	MER104|DNA|TcMar-Tc2	-126821	NR_030596	100126309		NR_030596	miRBase:MI0005541	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
19-PTNLD28-TUMOR_peak_81047	chr5	86795940	86796125	+	24.99210	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-87182	NM_001239	902	Hs.292524	NM_001239	HPRD:09059	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
19-PTNLD28-TUMOR_peak_64284	chr22	18640077	18640359	+	24.99210	NA	intron (NM_017414, intron 1 of 10)	intron (NM_017414, intron 1 of 10)	7460	NM_017414	11274	Hs.38260	NM_017414	HPRD:06136	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding
19-PTNLD28-TUMOR_peak_13637	chr10	53029699	53029852	+	24.99210	NA	intron (NM_006258, intron 2 of 17)	intron (NM_006258, intron 2 of 17)	-29558	NR_030336	693190		NR_030336		MIR605	MIRN605|hsa-mir-605	microRNA 605	ncRNA
19-PTNLD28-TUMOR_peak_28178	chr13	48086495	48086798	+	24.99210	NA	Intergenic	MLT2A2|LTR|ERVL	488816	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_43189	chr17	69966479	69966739	+	24.99210	NA	Intergenic	L2a|LINE|L2	55511	NR_110876	102723505	Hs.547482	NR_110876		LOC102723505	-	uncharacterized LOC102723505	ncRNA
19-PTNLD28-TUMOR_peak_89822	chr6	145469631	145469895	+	24.99210	NA	Intergenic	LTR16A|LTR|ERVL	-586242	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
19-PTNLD28-TUMOR_peak_67103	chr3	22094415	22094549	+	24.99210	NA	Intergenic	L1MA8|LINE|L1	95851	NR_046876	100874221	Hs.160616	NR_046876		ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_107685	chrX	17565810	17566013	+	24.99210	NA	intron (NM_001291867, intron 1 of 8)	MLT1H2|LTR|ERVL-MaLR	11337	NR_046632	100873920	Hs.584577	NR_046632		NHS-AS1	-	NHS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62390	chr20	57595991	57596334	+	24.98852	NA	intron (NM_030773, intron 1 of 3)	intron (NM_030773, intron 1 of 3)	1853	NM_030773	81027	Hs.303023	NM_030773	HPRD:18243	TUBB1	-	tubulin, beta 1 class VI	protein-coding
19-PTNLD28-TUMOR_peak_73262	chr3	192212013	192212267	+	24.98852	NA	intron (NM_004113, intron 2 of 5)	L3|LINE|CR1	-85302	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_82484	chr5	138208818	138209254	+	24.98837	NA	exon (NM_015564, exon 2 of 2)	exon (NM_015564, exon 2 of 2)	-1883	NM_001290312	1495	Hs.445981	NM_001903	HPRD:00285	CTNNA1	CAP102	catenin (cadherin-associated protein), alpha 1, 102kDa	protein-coding
19-PTNLD28-TUMOR_peak_70902	chr3	133102130	133102249	+	24.98837	NA	intron (NM_023943, intron 4 of 5)	MIR3|SINE|MIR	-16650	NM_003571	8419	Hs.659862	NM_003571	HPRD:04444	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2, phakinin	protein-coding
19-PTNLD28-TUMOR_peak_102276	chr9	16032886	16033139	+	24.98837	NA	Intergenic	Intergenic	220093	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_55809	chr2	133062242	133062511	+	24.98837	NA	Intergenic	Intergenic	-46834	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
19-PTNLD28-TUMOR_peak_58001	chr2	206619621	206619852	+	24.98116	NA	intron (NM_003872, intron 12 of 16)	intron (NM_003872, intron 12 of 16)	72512	NM_201264	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_53333	chr2	70298042	70298254	+	24.95459	NA	intron (NR_033872, intron 4 of 10)	intron (NR_033872, intron 4 of 10)	15999	NR_033872	400960	Hs.683864	NR_033872	ENSG00000179818	PCBP1-AS1	-	PCBP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55204	chr2	118561439	118561965	+	24.95459	NA	Intergenic	L1PA3|LINE|L1	-10553	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_85738	chr6	18053834	18054088	+	24.95090	NA	Intergenic	Intergenic	-66107	NM_001243423	63971	Hs.94499	NM_022113	HPRD:09256	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
19-PTNLD28-TUMOR_peak_39103	chr16	84670583	84670732	+	24.95006	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-11474	NM_024731	79786	Hs.222731	NM_024731	HPRD:12675	KLHL36	C16orf44	kelch-like family member 36	protein-coding
19-PTNLD28-TUMOR_peak_8576	chr1	180580375	180580753	+	24.95006	NA	Intergenic	Intergenic	-20582	NM_001135669	9213	Hs.227656	NM_004736	HPRD:05574	XPR1	SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_55281	chr2	119981119	119981628	+	24.92964	NA	promoter-TSS (NM_182915)	promoter-TSS (NM_182915)	-11	NM_001008410	55240	Hs.647822	NM_018234	HPRD:10285	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2	STEAP family member 3, metalloreductase	protein-coding
19-PTNLD28-TUMOR_peak_36662	chr16	19864468	19864788	+	24.92455	NA	intron (NM_153208, intron 9 of 9)	intron (NM_153208, intron 9 of 9)	31523	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_44834	chr18	20109994	20110223	+	24.91699	NA	Intergenic	L1PA2|LINE|L1	-112230	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_90761	chr7	826168	826452	+	24.91699	NA	TTS (NM_017802)	TTS (NM_017802)	-28884	NM_001171946	23353	Hs.438072	NM_025154	HPRD:16257	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89143	chr6	112370349	112370544	+	24.91699	NA	Intergenic	Intergenic	-4832	NM_003880	8838	Hs.558428	NM_003880	HPRD:04550	WISP3	CCN6|LIBC|PPAC|PPD	WNT1 inducible signaling pathway protein 3	protein-coding
19-PTNLD28-TUMOR_peak_9135	chr1	200504807	200504991	+	24.91699	NA	Intergenic	Intergenic	84963	NM_014875	9928	Hs.3104	NM_014875	HPRD:06605	KIF14	-	kinesin family member 14	protein-coding
19-PTNLD28-TUMOR_peak_33438	chr15	45670339	45670864	+	24.91559	NA	exon (NM_001482, exon 1 of 9)	exon (NM_001482, exon 1 of 9)	379	NM_001482	2628	Hs.75335	NM_001482	HPRD:03838	GATM	AGAT|AT|CCDS3	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding
19-PTNLD28-TUMOR_peak_85229	chr6	8905942	8906393	+	24.91559	NA	Intergenic	Intergenic	253725	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_85432	chr6	12592922	12593176	+	24.91559	NA	Intergenic	Intergenic	-123988	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_1458	chr1	23778500	23778940	+	24.91559	NA	intron (NM_017707, intron 4 of 24)	intron (NM_017707, intron 4 of 24)	-27459	NM_003196	6920	Hs.446354	NM_003196	HPRD:16036	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A (SII), 3	protein-coding
19-PTNLD28-TUMOR_peak_74725	chr4	21449375	21449543	+	24.91347	NA	intron (NM_147182, intron 2 of 8)	MER44B|DNA|TcMar-Tigger	96820	NM_001035004	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_103816	chr9	74755609	74755787	+	24.91347	NA	intron (NM_001242507, intron 1 of 13)	intron (NM_001242507, intron 1 of 13)	-8569	NM_001242506	9615	Hs.494163	NM_004293	HPRD:08849	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_108551	chrX	64196104	64196467	+	24.91347	NA	non-coding (NR_045044, exon 1 of 5)	non-coding (NR_045044, exon 1 of 5)	128	NM_018684	55906	Hs.28249	NM_018684	HPRD:06584	ZC4H2	HCA127|KIAA1166|WRWF|WWS	zinc finger, C4H2 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_69884	chr3	113345755	113345979	+	24.91347	NA	intron (NM_017699, intron 24 of 24)	intron (NM_017699, intron 24 of 24)	32144	NR_039648	100616476		NR_039648		MIR4446	-	microRNA 4446	ncRNA
19-PTNLD28-TUMOR_peak_67224	chr3	25198285	25198452	+	24.90420	NA	Intergenic	Intergenic	-17455	NM_001290216	5915	Hs.654490	NM_000965	HPRD:07183	RARB	HAP|MCOPS12|NR1B2|RRB2	retinoic acid receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_54198	chr2	95781177	95781411	+	24.90420	NA	intron (NM_031902, intron 2 of 11)	intron (NM_031902, intron 2 of 11)	6460	NM_031902	64969	Hs.655259	NM_031902	HPRD:10099	MRPS5	MRP-S5|S5mt	mitochondrial ribosomal protein S5	protein-coding
19-PTNLD28-TUMOR_peak_67305	chr3	28877332	28877539	+	24.90420	NA	Intergenic	Intergenic	260666	NR_038840	645206	Hs.376725	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	ncRNA
19-PTNLD28-TUMOR_peak_33552	chr15	51121071	51121293	+	24.90420	NA	Intergenic	Intergenic	-63272	NM_032802	84888	Hs.401537	NM_032802	HPRD:09742	SPPL2A	IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
19-PTNLD28-TUMOR_peak_100000	chr8	107058089	107058433	+	24.90420	NA	intron (NR_125797, intron 1 of 4)	intron (NR_125797, intron 1 of 4)	14470	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89786	chr6	143748360	143748627	+	24.90420	NA	3' UTR (NM_001286259, exon 6 of 6)	3' UTR (NM_001286259, exon 6 of 6)	15321	NM_001286259	134637	Hs.709561	NM_182503		ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase, tRNA-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_68680	chr3	61809614	61809847	+	24.89808	NA	intron (NM_002841, intron 2 of 29)	AluY|SINE|Alu	262487	NM_002841	5793	Hs.595541	NM_002841		PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase, receptor type, G	protein-coding
19-PTNLD28-TUMOR_peak_54940	chr2	112062618	112062841	+	24.89808	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	15934	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_3197	chr1	46531152	46531314	+	24.89808	NA	intron (NM_003629, intron 5 of 9)	MLT1J|LTR|ERVL-MaLR	67147	NM_003629	8503	Hs.655387	NM_003629	HPRD:05831	PIK3R3	p55|p55-GAMMA	phosphoinositide-3-kinase, regulatory subunit 3 (gamma)	protein-coding
19-PTNLD28-TUMOR_peak_66859	chr3	14851261	14851479	+	24.89558	NA	Intergenic	L2c|LINE|L2	-9099	NM_152536	152273	Hs.412406	NM_152536	HPRD:13322	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_39176	chr16	85394067	85394238	+	24.88214	NA	Intergenic	Intergenic	-54221	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_104254	chr9	87827216	87827421	+	24.88214	NA	Intergenic	Intergenic	529626	NM_001286715	23287	Hs.719980	NM_015239	HPRD:08442	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_105695	chr9	119127448	119127729	+	24.86153	NA	intron (NM_002581, intron 18 of 21)	intron (NM_002581, intron 18 of 21)	35297	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19800	chr11	71414828	71415354	+	24.86153	NA	Intergenic	Intergenic	-83466	NM_018172	55199	Hs.567527	NM_018172	HPRD:13337	FAM86C1	FAM86C	family with sequence similarity 86, member C1	protein-coding
19-PTNLD28-TUMOR_peak_105970	chr9	125572656	125572843	+	24.83081	NA	Intergenic	Intergenic	10347	NM_080859	392392	Hs.632681	NM_080859	HPRD:14919	OR1K1	hg99	olfactory receptor, family 1, subfamily K, member 1	protein-coding
19-PTNLD28-TUMOR_peak_18597	chr11	56616795	56617032	+	24.82982	NA	intron (NR_110137, intron 1 of 2)	Tigger12|DNA|TcMar-Tigger	959	NR_110136	101927120	Hs.472675	NR_110136	ENSG00000255433	LOC101927120	-	uncharacterized LOC101927120	ncRNA
19-PTNLD28-TUMOR_peak_37294	chr16	30953307	30953636	+	24.82982	NA	exon (NM_001282351, exon 8 of 11)	exon (NM_001282351, exon 8 of 11)	-6934	NM_152288	93129	Hs.745104	NM_152288	HPRD:14431	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_54468	chr2	100630367	100630605	+	24.82945	NA	intron (NM_001025108, intron 2 of 23)	intron (NM_001025108, intron 2 of 23)	91559	NM_001025108	3899	Hs.444414	NM_002285	HPRD:03272	AFF3	LAF4|MLLT2-like	AF4/FMR2 family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_94680	chr7	105399674	105399912	+	24.82945	NA	TTS (NM_152749)	TTS (NM_152749)	-80184	NM_138495	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_45461	chr18	43383132	43383355	+	24.82492	NA	Intergenic	L1MEf|LINE|L1	-22302	NM_213602	284266	Hs.287692	NM_213602	HPRD:13011	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig-like lectin 15	protein-coding
19-PTNLD28-TUMOR_peak_17503	chr11	18350758	18350935	+	24.82325	NA	intron (NM_001142307, intron 2 of 15)	L2c|LINE|L2	7030	NM_005316	2965	Hs.577202	NM_005316	HPRD:01807	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH, polypeptide 1, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_13519	chr10	49907084	49907363	+	24.82325	NA	intron (NM_020945, intron 1 of 61)	intron (NM_020945, intron 1 of 61)	13705	NM_020945	57705	Hs.287379	NM_020945	ENSG00000128815	WDFY4	C10orf64	WDFY family member 4	protein-coding
19-PTNLD28-TUMOR_peak_87368	chr6	40775221	40775392	+	24.82325	NA	Intergenic	MLT2A2|LTR|ERVL	215713	NR_110873	101929555	Hs.552555	NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
19-PTNLD28-TUMOR_peak_88439	chr6	79493295	79493450	+	24.82325	NA	Intergenic	L1HS|LINE|L1	-83889	NM_001010844	134728	Hs.656212	NM_001010844	HPRD:17157	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_33650	chr15	55611168	55611548	+	24.82325	NA	5' UTR (NM_004855, exon 1 of 12)	5' UTR (NM_004855, exon 1 of 12)	225	NM_004855	9488	Hs.612814	NM_004855	HPRD:04988	PIGB	GPI-MT-III|PIG-B	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding
19-PTNLD28-TUMOR_peak_11130	chr1	236180202	236180341	+	24.81444	NA	intron (NM_002508, intron 10 of 19)	intron (NM_002508, intron 10 of 19)	48210	NM_002508	4811	Hs.356624	NM_002508	HPRD:00574	NID1	NID	nidogen 1	protein-coding
19-PTNLD28-TUMOR_peak_100358	chr8	120473993	120474165	+	24.81026	NA	Intergenic	L1PA3|LINE|L1	45527	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_73804	chr4	1124437	1124654	+	24.78964	NA	Intergenic	Intergenic	-7593	NR_033768	100379220	Hs.635208	NR_033768	ENSG00000215367	TMED11P	-	transmembrane emp24 protein transport domain containing 11, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62544	chr20	61532100	61532375	+	24.77729	NA	intron (NM_080797, intron 6 of 14)	intron (NM_080797, intron 6 of 14)	25666	NM_001193369	11083	Hs.517172	NM_022105	HPRD:10363	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
19-PTNLD28-TUMOR_peak_5524	chr1	111746313	111746840	+	24.75570	NA	intron (NM_001271833, intron 1 of 11)	CpG	584	NM_001271833	79961	Hs.557850	NM_024901		DENND2D	-	DENN/MADD domain containing 2D	protein-coding
19-PTNLD28-TUMOR_peak_92110	chr7	39793784	39794192	+	24.75214	NA	intron (NR_026999, intron 1 of 11)	LTR12C|LTR|ERV1	20821	NR_026999	349114	Hs.414183	NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
19-PTNLD28-TUMOR_peak_8641	chr1	181455011	181455251	+	24.75214	NA	intron (NM_001205293, intron 1 of 47)	CpG	2445	NM_001205294	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_79944	chr5	55354264	55354548	+	24.75214	NA	Intergenic	Intergenic	63411	NR_102755	441072	Hs.482141	NR_102755	ENSG00000227908	FLJ31104	-	uncharacterized LOC441072	ncRNA
19-PTNLD28-TUMOR_peak_71050	chr3	135646051	135646283	+	24.75151	NA	Intergenic	Intergenic	-38348	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_36363	chr16	12678504	12678955	+	24.75120	NA	Intergenic	Intergenic	-135449	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_79023	chr5	14352266	14352454	+	24.74702	NA	intron (NM_007118, intron 11 of 56)	intron (NM_007118, intron 11 of 56)	208531	NM_007118	7204	Hs.130031	NM_007118	HPRD:03537	TRIO	ARHGEF23|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_4006	chr1	62855820	62856008	+	24.74702	NA	Intergenic	Intergenic	-46061	NM_001017415	7398	Hs.35086	NM_003368	HPRD:04593	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_86708	chr6	32055453	32055638	+	24.73089	NA	intron (NM_019105, intron 6 of 43)	CpG	21606	NM_019105	7148	Hs.485104	NM_019105	HPRD:02993	TNXB	EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS	tenascin XB	protein-coding
19-PTNLD28-TUMOR_peak_31787	chr14	93570120	93570414	+	24.73009	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	11996	NM_001142593	3705	Hs.308122	NM_014216	HPRD:03501	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
19-PTNLD28-TUMOR_peak_54951	chr2	112212079	112212224	+	24.73009	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	40541	NR_015395	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_4279	chr1	68773290	68773469	+	24.73009	NA	Intergenic	Intergenic	-75095	NM_024911	79971	Hs.647659	NM_024911	HPRD:10980	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
19-PTNLD28-TUMOR_peak_104696	chr9	97137576	97137795	+	24.72949	NA	intron (NM_032558, intron 1 of 11)	intron (NM_032558, intron 1 of 11)	852	NM_032558	84641	Hs.555996	NM_032558	HPRD:07869	HIATL1	-	hippocampus abundant transcript-like 1	protein-coding
19-PTNLD28-TUMOR_peak_59713	chr20	8312070	8312254	+	24.70777	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	199250	NM_015192	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_31266	chr14	74684449	74684779	+	24.70777	NA	Intergenic	CpG	-21561	NM_182894	338917	Hs.449771	NM_182894	HPRD:08852	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_56836	chr2	169193401	169193604	+	24.70777	NA	Intergenic	Intergenic	-89397	NM_013233	27347	Hs.276271	NM_013233	HPRD:09627	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
19-PTNLD28-TUMOR_peak_88157	chr6	57284221	57284436	+	24.70777	NA	intron (NM_000947, intron 7 of 14)	intron (NM_000947, intron 7 of 14)	101913	NM_001282487	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	primase, DNA, polypeptide 2 (58kDa)	protein-coding
19-PTNLD28-TUMOR_peak_50529	chr19	58325358	58325557	+	24.69075	NA	intron (NM_024762, intron 1 of 2)	intron (NM_024762, intron 1 of 2)	824	NM_024762	79818	Hs.560727	NM_024762	HPRD:15835	ZNF552	-	zinc finger protein 552	protein-coding
19-PTNLD28-TUMOR_peak_32508	chr15	21995712	21996153	+	24.68402	NA	Intergenic	CpG	20946	NR_024387	646243	Hs.720910	NR_024387		CXADRP2	-	coxsackie virus and adenovirus receptor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_41309	chr17	37787641	37788002	+	24.68023	NA	intron (NM_001242464, intron 4 of 6)	intron (NM_001242464, intron 4 of 6)	3070	NM_181505	84152	Hs.286192	NM_032192	HPRD:05097	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding
19-PTNLD28-TUMOR_peak_55070	chr2	113943248	113943669	+	24.68012	NA	exon (NM_012455, exon 5 of 17)	exon (NM_012455, exon 5 of 17)	11898	NM_012455	23550	Hs.516306	NM_012455	HPRD:15191	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_24629	chr12	56130989	56131229	+	24.68012	NA	Intergenic	Intergenic	-5955	NM_005811	10220	Hs.600883	NM_005811	HPRD:04895	GDF11	BMP-11|BMP11	growth differentiation factor 11	protein-coding
19-PTNLD28-TUMOR_peak_14838	chr10	91134066	91134364	+	24.67653	NA	Intergenic	Intergenic	-3598	NM_001010987	439996	Hs.500491	NM_001010987	HPRD:17129	IFIT1B	IFIT1L|bA149I23.6	interferon-induced protein with tetratricopeptide repeats 1B	protein-coding
19-PTNLD28-TUMOR_peak_5570	chr1	112747321	112747456	+	24.67653	NA	Intergenic	L1PA3|LINE|L1	-191412	NM_018704	55917	Hs.744100	NM_018704	HPRD:10906	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_9033	chr1	196527662	196527839	+	24.67653	NA	intron (NM_001287819, intron 1 of 26)	intron (NM_001287819, intron 1 of 26)	23861	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_93805	chr7	87204978	87205128	+	24.67374	NA	intron (NM_000927, intron 5 of 28)	intron (NM_000927, intron 5 of 28)	-52676	NM_001134405	154661	Hs.411488	NM_138290	HPRD:15274	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_35827	chr16	2610792	2611129	+	24.66056	NA	intron (NM_001261816, intron 2 of 11)	intron (NM_001261816, intron 2 of 11)	22995	NM_002613	5170	Hs.459691	NM_002613	HPRD:05556	PDPK1	PDK1|PDPK2|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_3022	chr1	44024197	44024411	+	24.64332	NA	intron (NM_130440, intron 5 of 32)	intron (NM_130440, intron 5 of 32)	27757	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_68283	chr3	51720577	51720846	+	24.64164	NA	intron (NM_001243725, intron 3 of 4)	intron (NM_001243725, intron 3 of 4)	15068	NR_103463	51368	Hs.517864	NM_015926	HPRD:15492	TEX264	ZSIG11	testis expressed 264	protein-coding
19-PTNLD28-TUMOR_peak_32766	chr15	29960385	29960523	+	24.64160	NA	Intergenic	Intergenic	-97527	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_104357	chr9	90207508	90207882	+	24.64160	NA	intron (NM_001288729, intron 2 of 25)	intron (NM_001288729, intron 2 of 25)	94245	NM_001288729	1612	Hs.380277	NM_004938	HPRD:02902	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_109426	chrX	129095366	129095596	+	24.63766	NA	Intergenic	Intergenic	-43683	NM_021946	63035	Hs.496748	NM_021946	HPRD:06517	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21633	chr11	120144196	120144452	+	24.63766	NA	intron (NM_014352, intron 3 of 12)	intron (NM_014352, intron 3 of 12)	-7683	NR_038829	649133	Hs.568902	NR_038829	ENSG00000259541	LOC649133	-	uncharacterized LOC649133	ncRNA
19-PTNLD28-TUMOR_peak_44301	chr18	2980184	2980600	+	24.61693	NA	intron (NM_014646, intron 1 of 19)	intron (NM_014646, intron 1 of 19)	31553	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_109427	chrX	129116271	129116680	+	24.61131	NA	Intergenic	CpG	-22689	NM_021946	63035	Hs.496748	NM_021946	HPRD:06517	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_77492	chr4	148463788	148464032	+	24.60648	NA	non-coding (NR_045958, exon 7 of 7)	non-coding (NR_045958, exon 7 of 7)	61841	NM_001957	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_108412	chrX	54500957	54501213	+	24.60648	NA	intron (NM_004463, intron 1 of 17)	intron (NM_004463, intron 1 of 17)	21514	NM_004463	2245	Hs.709201	NM_004463	HPRD:02373	FGD1	AAS|FGDY|MRXS16|ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73178	chr3	190056658	190056832	+	24.60648	NA	Intergenic	LTR16A1|LTR|ERVL	-16510	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_71446	chr3	143363232	143363645	+	24.60648	NA	intron (NM_173653, intron 6 of 15)	intron (NM_173653, intron 6 of 15)	203935	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_35033	chr15	85977641	85977795	+	24.60648	NA	intron (NM_007200, intron 1 of 36)	L1PA2|LINE|L1	53871	NM_006738	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_4529	chr1	83285046	83285315	+	24.60648	NA	Intergenic	Intergenic	165425	NR_110632	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_72823	chr3	184521153	184521343	+	24.59650	NA	Intergenic	Intergenic	-8683	NM_001009921	23355	Hs.269263	NM_015303	HPRD:11111	VPS8	KIAA0804	vacuolar protein sorting 8 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_87033	chr6	35569117	35569603	+	24.58621	NA	intron (NM_001145775, intron 6 of 11)	intron (NM_001145775, intron 6 of 11)	63206	NR_049873	100847048		NR_049873	miRBase:MI0019295	MIR5690	-	microRNA 5690	ncRNA
19-PTNLD28-TUMOR_peak_81930	chr5	126054067	126054446	+	24.57570	NA	Intergenic	Intergenic	-58059	NM_005573	4001	Hs.89497	NM_005573	HPRD:01036	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding
19-PTNLD28-TUMOR_peak_78166	chr4	182892642	182892920	+	24.56467	NA	Intergenic	AluJr4|SINE|Alu	172887	NR_027107	90768	Hs.175465	NM_178838		MGC45800	-	uncharacterized LOC90768	ncRNA
19-PTNLD28-TUMOR_peak_21612	chr11	119938760	119939071	+	24.56467	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	69948	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_77897	chr4	164133433	164133693	+	24.56467	NA	Intergenic	L1PA3|LINE|L1	-45490	NM_001128931	92345	Hs.129095	NM_138386	HPRD:10054	NAF1	-	nuclear assembly factor 1 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_42749	chr17	60186919	60187114	+	24.56467	NA	Intergenic	Intergenic	-44373	NM_005121	9969	Hs.282678	NM_005121	HPRD:07229	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
19-PTNLD28-TUMOR_peak_13797	chr10	62206689	62206923	+	24.56467	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-57172	NM_020987	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_96114	chr7	144424055	144424182	+	24.56467	NA	intron (NM_022445, intron 3 of 8)	LTR13|LTR|ERVK	109028	NM_022445	27010	Hs.660232	NM_022445	HPRD:06967	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_100293	chr8	119427272	119427443	+	24.56467	NA	intron (NR_109794, intron 3 of 4)	intron (NR_109794, intron 3 of 4)	-205883	NR_038210	552860	Hs.571527	NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72189	chr3	167765034	167765273	+	24.56467	NA	intron (NM_014498, intron 2 of 15)	intron (NM_014498, intron 2 of 15)	48264	NM_014498	27333	Hs.143600	NM_014498	HPRD:08429	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_96541	chr7	153494497	153494754	+	24.54720	NA	Intergenic	Intergenic	-89557	NM_001039350	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_104058	chr9	82196658	82197019	+	24.54597	NA	intron (NR_104239, intron 4 of 20)	intron (NR_104239, intron 4 of 20)	10150	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4	transducin-like enhancer of split 4	protein-coding
19-PTNLD28-TUMOR_peak_1338	chr1	21821371	21821656	+	24.54597	NA	Intergenic	Intergenic	-14345	NM_001127501	249	Hs.75431	NM_000478	HPRD:01377	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding
19-PTNLD28-TUMOR_peak_77082	chr4	131484725	131485081	+	24.54597	NA	Intergenic	Intergenic	-792270	NR_110753	101927282	Hs.407480	NR_110753	ENSG00000246876	LOC101927282	-	uncharacterized LOC101927282	ncRNA
19-PTNLD28-TUMOR_peak_64375	chr22	19884197	19884731	+	24.54474	NA	intron (NM_001282512, intron 10 of 11)	intron (NM_001282512, intron 10 of 11)	-42002	NM_053004	54584	Hs.105642	NM_053004	HPRD:13591	GNB1L	DGCRK3|GY2|WDR14|WDVCF	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding
19-PTNLD28-TUMOR_peak_94136	chr7	97910067	97910321	+	24.54311	NA	promoter-TSS (NM_015379)	promoter-TSS (NM_015379)	-785	NM_015379	25798	Hs.567438	NM_015379	HPRD:16562	BRI3	I3	brain protein I3	protein-coding
19-PTNLD28-TUMOR_peak_16513	chr11	796164	796517	+	24.54311	NA	promoter-TSS (NM_024698)	promoter-TSS (NM_024698)	-77	NM_024698	79751	Hs.99486	NM_024698	HPRD:15356	SLC25A22	EIEE3|GC1|NET44	solute carrier family 25 (mitochondrial carrier: glutamate), member 22	protein-coding
19-PTNLD28-TUMOR_peak_9677	chr1	205860732	205860860	+	24.53867	NA	intron (NR_046097, intron 2 of 2)	HERVK9-int|LTR|ERVK	29589	NR_046097	284581		NR_046097		LOC284581	-	uncharacterized LOC284581	ncRNA
19-PTNLD28-TUMOR_peak_22540	chr12	3323786	3324126	+	24.51921	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	137435	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_52034	chr2	32710006	32710336	+	24.50586	NA	intron (NM_016252, intron 39 of 73)	L1MC4|LINE|L1	-47049	NR_030285	693143		NR_030285		MIR558	MIRN558|hsa-mir-558	microRNA 558	ncRNA
19-PTNLD28-TUMOR_peak_31375	chr14	76760187	76760419	+	24.50586	NA	Intergenic	Intergenic	-22827	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_38374	chr16	67850503	67850821	+	24.49204	NA	intron (NM_001288994, intron 2 of 10)	intron (NM_001288994, intron 2 of 10)	9881	NM_001288990	55815	Hs.632212	NM_018430	HPRD:09656	TSNAXIP1	TXI1	translin-associated factor X interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_57100	chr2	176464779	176465408	+	24.49204	NA	Intergenic	Intergenic	401925	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_54500	chr2	101369191	101369378	+	24.49204	NA	Intergenic	L2c|LINE|L2	-67329	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_101167	chr8	134779454	134779842	+	24.49031	NA	Intergenic	Intergenic	9947	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
19-PTNLD28-TUMOR_peak_66591	chr3	11197166	11197346	+	24.48134	NA	intron (NM_001098212, intron 1 of 1)	intron (NM_001098212, intron 1 of 1)	1042	NM_001098212	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_96324	chr7	150715357	150715552	+	24.47879	NA	non-coding (NR_073169, exon 7 of 18)	non-coding (NR_073169, exon 7 of 18)	6132	NR_073169	285973	Hs.707300	NM_173681	HPRD:08253	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
19-PTNLD28-TUMOR_peak_99521	chr8	94882045	94882212	+	24.46648	NA	Intergenic	Intergenic	46219	NR_039602	100616169		NR_039602	miRBase:MI0003840	MIR378D2	-	microRNA 378d-2	ncRNA
19-PTNLD28-TUMOR_peak_47820	chr19	16563295	16563417	+	24.46498	NA	intron (NM_001258374, intron 1 of 23)	FAM|SINE|Alu	19467	NM_001258374	58513	Hs.654639	NM_021235	HPRD:09445	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
19-PTNLD28-TUMOR_peak_40817	chr17	27234177	27234414	+	24.46383	NA	intron (NM_001033561, intron 13 of 14)	intron (NM_001033561, intron 13 of 14)	-4206	NM_144683	147015	Hs.631760	NM_144683	HPRD:14488	DHRS13	SDR7C5	dehydrogenase/reductase (SDR family) member 13	protein-coding
19-PTNLD28-TUMOR_peak_57895	chr2	203735545	203735786	+	24.46383	NA	intron (NM_138468, intron 1 of 13)	intron (NM_138468, intron 1 of 13)	530	NM_001288623	130026	Hs.516629	NM_138468	HPRD:12446	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_106120	chr9	129424030	129424343	+	24.46383	NA	intron (NM_002316, intron 2 of 7)	intron (NM_002316, intron 2 of 7)	47464	NM_002316	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_63243	chr21	34752284	34752437	+	24.46021	NA	Intergenic	MER34C2|LTR|ERV1	-22842	NM_005534	3460	Hs.634632	NM_005534	HPRD:00956	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
19-PTNLD28-TUMOR_peak_89647	chr6	138194528	138194723	+	24.45494	NA	intron (NM_001270508, intron 2 of 8)	intron (NM_001270508, intron 2 of 8)	-5255	NR_049793	100130476	Hs.598050	NR_049793	ENSG00000237499	LOC100130476	-	uncharacterized LOC100130476	ncRNA
19-PTNLD28-TUMOR_peak_21695	chr11	121448989	121449446	+	24.45494	NA	intron (NM_003105, intron 25 of 47)	intron (NM_003105, intron 25 of 47)	126305	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_12422	chr10	24264448	24264683	+	24.45494	NA	intron (NM_001098500, intron 1 of 18)	intron (NM_001098500, intron 1 of 18)	-233155	NM_001282767	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_67433	chr3	32822815	32823259	+	24.45494	NA	Intergenic	CpG	-36473	NM_001039111	131405	Hs.567678	NM_001039111		TRIM71	LIN-41|LIN41	tripartite motif containing 71, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_71961	chr3	157226316	157226648	+	24.45494	NA	Intergenic	Intergenic	-5067	NM_001167916	79674	Hs.658046	NM_024621	HPRD:07782	VEPH1	MELT|VEPH	ventricular zone expressed PH domain-containing 1	protein-coding
19-PTNLD28-TUMOR_peak_55231	chr2	119188527	119188683	+	24.45494	NA	Intergenic	Intergenic	171937	NR_110272	101927709	Hs.274529	NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
19-PTNLD28-TUMOR_peak_23020	chr12	10548378	10548594	+	24.45399	NA	intron (NM_001199805, intron 4 of 12)	intron (NM_001199805, intron 4 of 12)	-5833	NM_007360	22914	Hs.387787	NM_007360	HPRD:17240	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin-like receptor subfamily K, member 1	protein-coding
19-PTNLD28-TUMOR_peak_104679	chr9	96856805	96856923	+	24.45399	NA	intron (NM_152422, intron 4 of 8)	L1PA2|LINE|L1	10153	NM_001253829	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74992	chr4	39137005	39137183	+	24.45399	NA	intron (NR_106996, intron 1 of 3)	LTR41|LTR|ERVL	31574	NR_106996	102466247		NR_106996		MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
19-PTNLD28-TUMOR_peak_83043	chr5	147365281	147365513	+	24.45399	NA	Intergenic	Intergenic	-78138	NM_006846	11005	Hs.331555	NM_006846	HPRD:05423	SPINK5	LEKTI|LETKI|NETS|NS|VAKTI	serine peptidase inhibitor, Kazal type 5	protein-coding
19-PTNLD28-TUMOR_peak_48653	chr19	35632019	35632177	+	24.45356	NA	exon (NM_021902, exon 4 of 8)	exon (NM_021902, exon 4 of 8)	1560	NM_001278718	5348	Hs.442498	NM_005031	HPRD:03837	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_37447	chr16	33020940	33021108	+	24.44263	NA	Intergenic	Intergenic	-124561	NR_003083	386757	Hs.433146	NM_198857	HPRD:13479	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_38958	chr16	81300261	81300588	+	24.44263	NA	intron (NM_017429, intron 5 of 10)	intron (NM_017429, intron 5 of 10)	28128	NM_017429	53630	Hs.212172	NM_017429	HPRD:12042	BCO1	BCDO|BCDO1|BCMO|BCMO1|BCO	beta-carotene oxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_7890	chr1	165253789	165254023	+	24.44263	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	71572	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_7709	chr1	161535993	161536423	+	24.42945	NA	Intergenic	Intergenic	-14921	NM_201563	9103	Hs.656750	NM_201563		FCGR2C	CD32|CD32C|CDW32|FCG2|FCRIIC|IGFR2	Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_58071	chr2	208268622	208269120	+	24.42945	NA	Intergenic	Intergenic	-125745	NM_134442	1385	Hs.516646	NM_004379	HPRD:00442	CREB1	CREB	cAMP responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_35212	chr15	90931853	90932048	+	24.42492	NA	intron (NM_003870, intron 1 of 37)	CpG	477	NM_003870	8826	Hs.430551	NM_003870	HPRD:04541	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47276	chr19	11052836	11052970	+	24.42403	NA	Intergenic	Intergenic	13479	NM_138358	90580	Hs.164026	NM_138358	HPRD:14275	C19orf52	-	chromosome 19 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_7050	chr1	154259423	154259598	+	24.41577	NA	Intergenic	SVA_D|Other|Other	14471	NM_001018837	10456	Hs.199625	NM_006118	HPRD:12075	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
19-PTNLD28-TUMOR_peak_65411	chr22	37892775	37893013	+	24.41322	NA	intron (NM_014550, intron 12 of 19)	intron (NM_014550, intron 12 of 19)	-10416	NM_002405	4242	Hs.517603	NM_002405	HPRD:03988	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_53764	chr2	85402859	85403037	+	24.40940	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	42365	NM_031283	83439	Hs.516297	NM_031283	HPRD:06874	TCF7L1	TCF-3|TCF3	transcription factor 7-like 1 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_103054	chr9	38324073	38324251	+	24.40940	NA	Intergenic	SVA_F|Other|Other	-68499	NM_000692	219	Hs.436219	NM_000692	HPRD:00005	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
19-PTNLD28-TUMOR_peak_21955	chr11	126284573	126284760	+	24.40940	NA	TTS (NM_001254759)	TTS (NM_001254759)	8589	NM_001254759	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_56139	chr2	145147021	145147540	+	24.40652	NA	exon (NM_001171653, exon 9 of 9)	exon (NM_001171653, exon 9 of 9)	-57179	NM_001284234	79712	Hs.44780	NM_024659	HPRD:13615	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_36562	chr16	16844424	16844576	+	24.40652	NA	Intergenic	L1PA3|LINE|L1	371398	NM_001282511	101059953	Hs.636569	NM_001282511		NPIPA8	LCR16a9	nuclear pore complex interacting protein family, member A8	protein-coding
19-PTNLD28-TUMOR_peak_2601	chr1	39300987	39301176	+	24.40652	NA	Intergenic	Intergenic	24414	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_94682	chr7	105417824	105418187	+	24.40652	NA	intron (NM_152749, intron 3 of 3)	L2a|LINE|L2	-98396	NM_138495	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_93730	chr7	83684413	83684630	+	24.40652	NA	intron (NM_006080, intron 5 of 16)	L1PA3|LINE|L1	139696	NM_006080	10371	Hs.252451	NM_006080		SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
19-PTNLD28-TUMOR_peak_32104	chr14	102276554	102276747	+	24.39615	NA	intron (NM_178586, intron 1 of 12)	intron (NM_178586, intron 1 of 12)	510	NM_178587	5527	Hs.368264	NM_002719	HPRD:03385	PPP2R5C	B56G|PR61G	protein phosphatase 2, regulatory subunit B', gamma	protein-coding
19-PTNLD28-TUMOR_peak_3323	chr1	47998952	47999221	+	24.37234	NA	Intergenic	CpG	97397	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_76749	chr4	119345169	119345481	+	24.36944	NA	Intergenic	Intergenic	-71403	NM_003619	8492	Hs.445857	NM_003619	HPRD:05989	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine, 12 (neurotrypsin, motopsin)	protein-coding
19-PTNLD28-TUMOR_peak_38441	chr16	68765994	68766185	+	24.36687	NA	Intergenic	Intergenic	-5106	NM_004360	999	Hs.461086	NM_004360	HPRD:01885	CDH1	Arc-1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1, type 1, E-cadherin (epithelial)	protein-coding
19-PTNLD28-TUMOR_peak_64681	chr22	23657870	23658015	+	24.36600	NA	3' UTR (NM_021574, exon 22 of 22)	3' UTR (NM_021574, exon 22 of 22)	52988	NR_033408	26226	Hs.729589	NR_033408		FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_33702	chr15	57843980	57844208	+	24.36600	NA	Intergenic	Intergenic	-40008	NR_104368	145781	Hs.437256	NM_001018090		GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
19-PTNLD28-TUMOR_peak_108095	chrX	45305353	45305673	+	24.36504	NA	Intergenic	Intergenic	-59120	NR_104645	101927528	Hs.550772	NR_104644	ENSG00000229563	LINC01204	-	long intergenic non-protein coding RNA 1204	ncRNA
19-PTNLD28-TUMOR_peak_79958	chr5	55555091	55555253	+	24.36504	NA	Intergenic	LTR79|LTR|ERVL	-25986	NM_024669	79722	Hs.436214	NM_024669	HPRD:07758	ANKRD55	-	ankyrin repeat domain 55	protein-coding
19-PTNLD28-TUMOR_peak_66849	chr3	14675432	14675627	+	24.36504	NA	Intergenic	Intergenic	-17724	NM_016474	51244	Hs.517820	NM_016474	HPRD:12820	CCDC174	C3orf19	coiled-coil domain containing 174	protein-coding
19-PTNLD28-TUMOR_peak_5407	chr1	110230283	110230657	+	24.36504	NA	promoter-TSS (NM_000561)	promoter-TSS (NM_000561)	52	NM_000561	2944	Hs.301961	NM_000561	HPRD:00707	GSTM1	GST1|GSTM1-1|GSTM1a-1a|GSTM1b-1b|GTH4|GTM1|H-B|MU|MU-1	glutathione S-transferase mu 1	protein-coding
19-PTNLD28-TUMOR_peak_87724	chr6	45030217	45030350	+	24.36504	NA	intron (NM_003599, intron 3 of 10)	L1PA2|LINE|L1	135224	NR_030313	693171		NR_030313		MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
19-PTNLD28-TUMOR_peak_91163	chr7	6407684	6407818	+	24.36504	NA	Intergenic	HAL1|LINE|L1	-6375	NM_006908	5879	Hs.413812	NM_006908	HPRD:03627	RAC1	Rac-1|TC-25|p21-Rac1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	protein-coding
19-PTNLD28-TUMOR_peak_32773	chr15	30024248	30024403	+	24.36287	NA	intron (NM_001301025, intron 16 of 28)	MIRb|SINE|MIR	89426	NM_001301026	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2577	chr1	38884223	38884417	+	24.34454	NA	Intergenic	Intergenic	-203881	NR_038928	339442	Hs.434245	NR_038928	ENSG00000237290	LINC01343	-	long intergenic non-protein coding RNA 1343	ncRNA
19-PTNLD28-TUMOR_peak_56496	chr2	158956343	158956612	+	24.34454	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	-1905	NM_173355	151531	Hs.128427	NM_173355	HPRD:15627	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
19-PTNLD28-TUMOR_peak_36934	chr16	25000423	25000597	+	24.34454	NA	intron (NM_001006634, intron 1 of 19)	intron (NM_001006634, intron 1 of 19)	26189	NM_018054	55114	Hs.373793	NM_018054	HPRD:12207	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
19-PTNLD28-TUMOR_peak_16920	chr11	7687016	7687215	+	24.32701	NA	intron (NM_016229, intron 8 of 8)	intron (NM_016229, intron 8 of 8)	7706	NM_016229	51700	Hs.414362	NM_016229	HPRD:06435	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_1239	chr1	19986311	19986518	+	24.32701	NA	Intergenic	Intergenic	-5366	NM_000871	3362	Hs.22180	NM_000871	HPRD:03066	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_92312	chr7	44775126	44775326	+	24.32701	NA	Intergenic	L1MB8|LINE|L1	-12939	NM_001300959	83637	Hs.77978	NM_031449	HPRD:13225	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger, MIZ-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_43833	chr17	77720021	77720194	+	24.32701	NA	Intergenic	Intergenic	15242	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_31185	chr14	72943493	72944143	+	24.32617	NA	intron (NM_001204420, intron 11 of 15)	intron (NM_001204420, intron 11 of 15)	-39710	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_90151	chr6	155312407	155312638	+	24.32617	NA	Intergenic	Intergenic	-98901	NM_012454	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_16446	chr11	192125	192289	+	24.32448	NA	promoter-TSS (NM_145651)	promoter-TSS (NM_145651)	-873	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	secretoglobin, family 1C, member 1-like	protein-coding
19-PTNLD28-TUMOR_peak_68579	chr3	58038138	58038306	+	24.32448	NA	intron (NM_001457, intron 1 of 45)	MARNA|DNA|TcMar-Mariner	44095	NM_001164317	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_69132	chr3	75478802	75479008	+	24.31241	NA	intron (NR_024241, intron 3 of 7)	intron (NR_024241, intron 3 of 7)	5361	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86, member D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10676	chr1	228931429	228931613	+	24.30788	NA	Intergenic	Intergenic	60697	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_30180	chr14	50378435	50378620	+	24.30788	NA	Intergenic	Intergenic	18791	NM_001663	382	Hs.525330	NM_001663		ARF6	-	ADP-ribosylation factor 6	protein-coding
19-PTNLD28-TUMOR_peak_83933	chr5	171523243	171523538	+	24.30788	NA	intron (NM_005990, intron 8 of 18)	intron (NM_005990, intron 8 of 18)	-89513	NM_033645	23291	Hs.484138	NM_012300	HPRD:07294	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_8245	chr1	172909446	172909877	+	24.30788	NA	Intergenic	MER102b|DNA|hAT-Charlie	110442	NM_005092	8995	Hs.248197	NM_005092		TNFSF18	AITRL|GITRL|TL6|hGITRL	tumor necrosis factor (ligand) superfamily, member 18	protein-coding
19-PTNLD28-TUMOR_peak_99257	chr8	76236895	76237092	+	24.30788	NA	promoter-TSS (NR_103850)	promoter-TSS (NR_103850)	-17	NR_103849	101805492	Hs.571424	NR_103848		CASC9	LINC00981	cancer susceptibility candidate 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_40783	chr17	26890598	26890923	+	24.30788	NA	intron (NM_033198, intron 4 of 11)	intron (NM_033198, intron 4 of 11)	8127	NM_033198	94005	Hs.462550	NM_033198	HPRD:15135	PIGS	-	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding
19-PTNLD28-TUMOR_peak_19592	chr11	68214795	68214973	+	24.30788	NA	intron (NM_001291902, intron 22 of 22)	intron (NM_001291902, intron 22 of 22)	-13302	NM_001164163	55291	Hs.503022	NM_018312	HPRD:10703	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6, regulatory subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_85763	chr6	18504066	18504453	+	24.30543	NA	Intergenic	Intergenic	-67756	NR_030312	693125		NR_030312	miRBase:MI0003593	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
19-PTNLD28-TUMOR_peak_38701	chr16	74440544	74440790	+	24.30140	NA	Intergenic	CpG	14701	NM_001011880	497190	Hs.454670	NM_001011880	HPRD:17419	CLEC18B	MRCL2	C-type lectin domain family 18, member B	protein-coding
19-PTNLD28-TUMOR_peak_66283	chr3	5058344	5058537	+	24.29946	NA	Intergenic	L2c|LINE|L2	37343	NM_003670	8553	Hs.744856	NM_003670	HPRD:16050	BHLHE40	BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14	basic helix-loop-helix family, member e40	protein-coding
19-PTNLD28-TUMOR_peak_9648	chr1	205505882	205506425	+	24.29946	NA	Intergenic	Intergenic	19610	NR_027086	284578	Hs.537020	NR_027086		LOC284578	-	uncharacterized LOC284578	ncRNA
19-PTNLD28-TUMOR_peak_82785	chr5	141340256	141340588	+	24.29168	NA	Intergenic	Intergenic	-1795	NM_016580	51294	Hs.439474	NM_016580	HPRD:09287	PCDH12	VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
19-PTNLD28-TUMOR_peak_8280	chr1	173572490	173572796	+	24.29168	NA	promoter-TSS (NM_178527)	promoter-TSS (NM_178527)	-410	NM_178527	284525	Hs.494981	NM_178527	HPRD:15398	SLC9C2	SLC9A11	solute carrier family 9, member C2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_109111	chrX	107018941	107019247	+	24.29168	NA	promoter-TSS (NM_198057)	promoter-TSS (NM_198057)	-77	NM_198057	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_23142	chr12	13056911	13057102	+	24.28465	NA	intron (NM_003979, intron 1 of 3)	intron (NM_003979, intron 1 of 3)	-11757	NR_030345	693199		NR_030345	miRBase:MI0003627	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
19-PTNLD28-TUMOR_peak_38025	chr16	57302778	57302991	+	24.27956	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	15700	NM_015993	51090	Hs.632215	NM_015993	HPRD:11854	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
19-PTNLD28-TUMOR_peak_41864	chr17	44121745	44121938	+	24.27558	NA	intron (NM_015443, intron 7 of 14)	intron (NM_015443, intron 7 of 14)	45225	NM_001007532	246744	Hs.661831	NM_001007532	HPRD:06142	STH	MAPTIT	saitohin	protein-coding
19-PTNLD28-TUMOR_peak_9890	chr1	209829218	209829438	+	24.25939	NA	Intergenic	Intergenic	-3508	NM_000228	3914	Hs.497636	NM_000228	HPRD:01032	LAMB3	BM600-125KDA|LAM5|LAMNB1	laminin, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_51082	chr2	10575122	10575292	+	24.25873	NA	Intergenic	Intergenic	11768	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
19-PTNLD28-TUMOR_peak_61746	chr20	48636915	48637085	+	24.25309	NA	Intergenic	Intergenic	21166	NR_051976	100887755	Hs.195705	NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81649	chr5	114713149	114713563	+	24.25222	NA	Intergenic	Intergenic	-80898	NM_001040440	153733	Hs.436121	NM_152549	HPRD:11346	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
19-PTNLD28-TUMOR_peak_30308	chr14	52809690	52810360	+	24.24568	NA	Intergenic	Intergenic	29009	NM_000956	5732	Hs.2090	NM_000956	HPRD:08905	PTGER2	EP2	prostaglandin E receptor 2 (subtype EP2), 53kDa	protein-coding
19-PTNLD28-TUMOR_peak_5511	chr1	111459569	111459770	+	24.23629	NA	Intergenic	MLT2F|LTR|ERVL	43947	NM_000560	963	Hs.443057	NM_000560	HPRD:01054	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
19-PTNLD28-TUMOR_peak_73141	chr3	189542451	189542669	+	24.23629	NA	intron (NM_003722, intron 4 of 13)	intron (NM_003722, intron 4 of 13)	-5151	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
19-PTNLD28-TUMOR_peak_33689	chr15	57308223	57308465	+	24.23629	NA	intron (NM_207036, intron 3 of 20)	MER89-int|LTR|ERV1	97511	NM_207038	6938	Hs.511504	NM_003205	HPRD:02725	TCF12	CRS3|HEB|HTF4|HsT17266|bHLHb20	transcription factor 12	protein-coding
19-PTNLD28-TUMOR_peak_51442	chr2	20341185	20341483	+	24.22131	NA	Intergenic	Intergenic	83593	NM_002997	6382	Hs.224607	NM_002997	HPRD:01718	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
19-PTNLD28-TUMOR_peak_54221	chr2	95999671	96000032	+	24.21655	NA	intron (NM_013434, intron 2 of 8)	intron (NM_013434, intron 2 of 8)	-12917	NM_001034914	30818	Hs.437376	NM_013434	HPRD:05232	KCNIP3	CSEN|DREAM|KCHIP3	Kv channel interacting protein 3, calsenilin	protein-coding
19-PTNLD28-TUMOR_peak_55653	chr2	130516530	130516750	+	24.21655	NA	Intergenic	Intergenic	-164110	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_74418	chr4	9155482	9155805	+	24.21324	NA	Intergenic	Intergenic	-56740	NM_001256852	100287144	Hs.741130	NM_001256852	ENSG00000231396	USP17L10	-	ubiquitin specific peptidase 17-like family member 10	protein-coding
19-PTNLD28-TUMOR_peak_19885	chr11	72414289	72414571	+	24.21205	NA	intron (NM_001135190, intron 11 of 30)	intron (NM_001135190, intron 11 of 30)	18973	NM_015242	116985	Hs.503165	NM_015242	HPRD:09440	ARAP1	CENTD2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_71733	chr3	150886181	150886331	+	24.21057	NA	intron (NM_053002, intron 10 of 42)	intron (NM_053002, intron 10 of 42)	34732	NM_013308	29909	Hs.549152	NM_013308	HPRD:17071	GPR171	H963	G protein-coupled receptor 171	protein-coding
19-PTNLD28-TUMOR_peak_4183	chr1	67410418	67410829	+	24.21057	NA	intron (NM_001146113, intron 3 of 13)	AluJb|SINE|Alu	14697	NM_001077704	57708	Hs.605432	NM_020948	HPRD:11362	MIER1	ER1|MI-ER1	mesoderm induction early response 1, transcriptional regulator	protein-coding
19-PTNLD28-TUMOR_peak_80135	chr5	59929277	59929515	+	24.21057	NA	intron (NM_018369, intron 7 of 10)	MLT1H|LTR|ERVL-MaLR	66597	NM_001145208	55789	Hs.482233	NM_018369	HPRD:16794	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_98325	chr8	39758023	39758325	+	24.21057	NA	Intergenic	L1MEf|LINE|L1	-13154	NM_002164	3620	Hs.840	NM_002164		IDO1	IDO|IDO-1|INDO	indoleamine 2,3-dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_95387	chr7	131430492	131430668	+	24.18714	NA	Intergenic	Intergenic	-164399	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_83428	chr5	154860248	154860560	+	24.18714	NA	Intergenic	Intergenic	467144	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
19-PTNLD28-TUMOR_peak_80082	chr5	58218369	58218995	+	24.18546	NA	Intergenic	Intergenic	77077	NM_001197223	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_65390	chr22	37583979	37584194	+	24.18546	NA	intron (NM_031910, intron 1 of 2)	intron (NM_031910, intron 1 of 2)	244	NM_182486	114904	Hs.22011	NM_031910	HPRD:12718	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
19-PTNLD28-TUMOR_peak_847	chr1	12540875	12541067	+	24.18179	NA	intron (NM_015378, intron 67 of 69)	intron (NM_015378, intron 67 of 69)	-26329	NR_003025	677885	Hs.658450	NR_003025		SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
19-PTNLD28-TUMOR_peak_43715	chr17	76165588	76165779	+	24.16488	NA	intron (NM_004710, intron 1 of 3)	intron (NM_004710, intron 1 of 3)	1012	NM_004710	9144	Hs.464210	NM_004710	HPRD:04891	SYNGR2	-	synaptogyrin 2	protein-coding
19-PTNLD28-TUMOR_peak_91054	chr7	5184084	5184460	+	24.16469	NA	promoter-TSS (NR_034163)	promoter-TSS (NR_034163)	-95	NR_034163	645700	Hs.690815	NR_034163	ENSG00000159904	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_106124	chr9	129466966	129467143	+	24.16469	NA	Intergenic	L2c|LINE|L2	90332	NM_002316	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_41847	chr17	43797118	43797369	+	24.16469	NA	intron (NM_001256299, intron 3 of 14)	intron (NM_001256299, intron 3 of 14)	-64403	NM_001145146	1394	Hs.417628	NM_004382	HPRD:08830	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f	corticotropin releasing hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_43605	chr17	74864357	74864559	+	24.15946	NA	promoter-TSS (NM_001199172)	promoter-TSS (NM_001199172)	-340	NM_001199172	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_5692	chr1	115258940	115259122	+	24.15767	NA	TTS (NM_001242893)	TTS (NM_001242893)	484	NM_002524	4893	Hs.486502	NM_002524	HPRD:01273	NRAS	ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6	neuroblastoma RAS viral (v-ras) oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_89957	chr6	150284246	150284424	+	24.14246	NA	promoter-TSS (NM_025218)	promoter-TSS (NM_025218)	-808	NM_025218	80329	Hs.653255	NM_025218	HPRD:09297	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59430	chr20	1309585	1309955	+	24.13983	NA	5' UTR (NM_080489, exon 1 of 9)	5' UTR (NM_080489, exon 1 of 9)	109	NM_080489	27111	Hs.657015	NM_015685	HPRD:18032	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
19-PTNLD28-TUMOR_peak_86119	chr6	26249955	26250641	+	24.13259	NA	TTS (NM_021018)	TTS (NM_021018)	537	NM_021018	8968	Hs.247814	NM_021018	HPRD:11910	HIST1H3F	H3/i|H3FI	histone cluster 1, H3f	protein-coding
19-PTNLD28-TUMOR_peak_89847	chr6	147283570	147283917	+	24.12929	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-158783	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_40903	chr17	28892115	28892327	+	24.12929	NA	Intergenic	Intergenic	5637	NM_015594	26083	Hs.241421	NM_015594	HPRD:13162	TBC1D29	-	TBC1 domain family, member 29	protein-coding
19-PTNLD28-TUMOR_peak_78102	chr4	175628334	175628692	+	24.11380	NA	intron (NM_001042543, intron 5 of 8)	L3|LINE|CR1	121953	NM_001042543	8001	Hs.413099	NM_006529	HPRD:02688	GLRA3	-	glycine receptor, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_59839	chr20	11950972	11951323	+	24.11380	NA	Intergenic	Intergenic	52634	NM_014962	22903	Hs.709366	NM_014962	HPRD:12538	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_20022	chr11	74437707	74437877	+	24.11380	NA	intron (NM_001278473, intron 1 of 10)	intron (NM_001278473, intron 1 of 10)	4435	NM_001278473	25884	Hs.432379	NM_015424	HPRD:09881	CHRDL2	BNF1|CHL2|FKSG37	chordin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_10251	chr1	222991609	222991770	+	24.10496	NA	intron (NM_032890, intron 1 of 9)	Zaphod3|DNA|hAT-Tip100	3258	NM_032890	84976	Hs.528817	NM_032890	HPRD:06326	DISP1	DISPA	dispatched homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_84534	chr5	179760694	179760950	+	24.10059	NA	intron (NM_005110, intron 4 of 18)	intron (NM_005110, intron 4 of 18)	19493	NM_005110	9945	Hs.696497	NM_005110	HPRD:04842	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_26576	chr12	118541447	118541983	+	24.10059	NA	promoter-TSS (NM_019086)	promoter-TSS (NM_019086)	95	NM_019086	54621	Hs.187624	NM_019086	HPRD:07941	VSIG10	-	V-set and immunoglobulin domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_9849	chr1	208340183	208340406	+	24.09951	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	77371	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_1857	chr1	28718551	28718818	+	24.09951	NA	intron (NM_001048183, intron 1 of 13)	MER44C|DNA|TcMar-Tigger	22591	NM_001048183	65979	Hs.225641	NM_023923	HPRD:07816	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
19-PTNLD28-TUMOR_peak_95915	chr7	141685363	141685934	+	24.09403	NA	Intergenic	L1PA3|LINE|L1	-10031	NM_004668	8972	Hs.122785	NM_004668	HPRD:01104	MGAM	MG|MGA	maltase-glucoamylase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_24467	chr12	53661981	53662358	+	24.08469	NA	promoter-TSS (NM_012291)	promoter-TSS (NM_012291)	86	NM_012291	9700	Hs.153479	NM_012291	HPRD:06825	ESPL1	ESP1|SEPA	extra spindle pole bodies homolog 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_60565	chr20	31989252	31989479	+	24.06646	NA	promoter-TSS (NM_016082)	promoter-TSS (NM_016082)	10	NM_016082	51654	Hs.435952	NM_016082	HPRD:12189	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49792	chr19	49553734	49553914	+	24.06646	NA	Intergenic	Intergenic	-1456	NM_033183	94115	Hs.659014	NM_033183	HPRD:12311	CGB8	-	chorionic gonadotropin, beta polypeptide 8	protein-coding
19-PTNLD28-TUMOR_peak_95872	chr7	140732811	140733010	+	24.05754	NA	Intergenic	L1PA2|LINE|L1	-18129	NM_053035	51650	Hs.416207	NM_016071	HPRD:17598	MRPS33	MRP-S33|PTD003|S33mt	mitochondrial ribosomal protein S33	protein-coding
19-PTNLD28-TUMOR_peak_21151	chr11	111852778	111852998	+	24.05104	NA	intron (NM_001037954, intron 6 of 19)	intron (NM_001037954, intron 6 of 19)	4855	NM_033425	85458	Hs.655626	NM_033425	HPRD:16804	DIXDC1	CCD1	DIX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73490	chr3	195385744	195385893	+	24.04108	NA	intron (NR_003265, intron 1 of 14)	intron (NR_003265, intron 1 of 14)	908	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_56617	chr2	161226124	161226381	+	24.03047	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	38141	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	ncRNA
19-PTNLD28-TUMOR_peak_61045	chr20	38542029	38542178	+	24.03047	NA	Intergenic	L2a|LINE|L2	-91000	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_7933	chr1	166154264	166154441	+	24.02356	NA	Intergenic	Intergenic	-18394	NM_001017961	149297	Hs.133029	NM_001017961	HPRD:18557	FAM78B	-	family with sequence similarity 78, member B	protein-coding
19-PTNLD28-TUMOR_peak_35288	chr15	92517621	92517852	+	24.02356	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	120798	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_664	chr1	10115892	10116103	+	24.02356	NA	intron (NM_006048, intron 1 of 26)	AluSz|SINE|Alu	22956	NM_006048	10277	Hs.593974	NM_006048	HPRD:11659	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
19-PTNLD28-TUMOR_peak_91355	chr7	16256094	16256207	+	24.02356	NA	intron (NM_001101417, intron 7 of 8)	L1PA2|LINE|L1	6039	NR_038947	100506025	Hs.649029	NR_038946	ENSG00000229688	ISPD-AS1	-	ISPD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40614	chr17	20415240	20415423	+	24.01838	NA	Intergenic	Intergenic	-7520	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_9815	chr1	207567046	207567367	+	24.01836	NA	Intergenic	LTR3B_|LTR|ERVK	-60439	NM_001006658	1380	Hs.445757	NM_001877	HPRD:00399	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement component (3d/Epstein Barr virus) receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_56501	chr2	159208144	159208333	+	24.01836	NA	intron (NM_138803, intron 2 of 13)	L1PA2|LINE|L1	105027	NM_138803	130940	Hs.668597	NM_138803	HPRD:14046	CCDC148	-	coiled-coil domain containing 148	protein-coding
19-PTNLD28-TUMOR_peak_92997	chr7	67642011	67642326	+	24.01836	NA	Intergenic	Intergenic	156928	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_1423	chr1	23077246	23077448	+	24.01349	NA	intron (NM_004442, intron 1 of 15)	MIR|SINE|MIR	31337	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
19-PTNLD28-TUMOR_peak_21388	chr11	116596514	116596964	+	24.01257	NA	Intergenic	Intergenic	46975	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_59921	chr20	15795652	15795886	+	24.00513	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	618265	NM_001033087	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_48386	chr19	29457730	29458241	+	24.00513	NA	non-coding (NR_027318, exon 2 of 2)	non-coding (NR_027318, exon 2 of 2)	-1390	NR_110760	102724958	Hs.112651	NR_110760		LOC102724958	-	uncharacterized LOC102724958	ncRNA
19-PTNLD28-TUMOR_peak_11889	chr10	6764206	6764446	+	24.00513	NA	Intergenic	Intergenic	56816	NR_108074	100652997	Hs.255086	NR_108074		LINC00706	-	long intergenic non-protein coding RNA 706	ncRNA
19-PTNLD28-TUMOR_peak_40991	chr17	31239351	31239601	+	23.99558	NA	Intergenic	Intergenic	-15452	NM_015544	26022	Hs.3447	NM_015544	HPRD:13171	TMEM98	-	transmembrane protein 98	protein-coding
19-PTNLD28-TUMOR_peak_94151	chr7	98147926	98148316	+	23.99558	NA	Intergenic	Intergenic	-98476	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_3233	chr1	46912589	46912761	+	23.99097	NA	non-coding (NR_121680, exon 3 of 3)	non-coding (NR_121680, exon 3 of 3)	2701	NR_121680	101929651	Hs.638707	NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
19-PTNLD28-TUMOR_peak_61921	chr20	50116968	50117139	+	23.98311	NA	intron (NM_001258296, intron 3 of 10)	MIR3|SINE|MIR	42205	NM_001258297	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_1829	chr1	28450019	28450446	+	23.98311	NA	Intergenic	Intergenic	-35084	NM_001282560	2140	Hs.185774	NM_001990	HPRD:09042	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
19-PTNLD28-TUMOR_peak_19533	chr11	67567363	67567529	+	23.96954	NA	intron (NR_024249, intron 2 of 3)	intron (NR_024249, intron 2 of 3)	5361	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109282	chrX	118289410	118289735	+	23.92571	NA	Intergenic	Intergenic	-5030	NM_020721	57481	Hs.97594	NM_020721	ENSG00000250423	KIAA1210	-	KIAA1210	protein-coding
19-PTNLD28-TUMOR_peak_83651	chr5	160386844	160387056	+	23.92571	NA	Intergenic	Intergenic	-21317	NR_027111	285629	Hs.554279	NR_027111	ENSG00000253417	LOC285629	-	uncharacterized LOC285629	ncRNA
19-PTNLD28-TUMOR_peak_40826	chr17	27335025	27335208	+	23.92571	NA	Intergenic	Intergenic	-1658	NM_001290202	124925	Hs.21837	NM_178860	HPRD:18041	SEZ6	-	seizure related 6 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_34444	chr15	74234407	74234841	+	23.92571	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-14035	NR_040068	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37153	chr16	29711943	29712095	+	23.92569	NA	Intergenic	Intergenic	21578	NM_014298	23475	Hs.513484	NM_014298		QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_19250	chr11	65133806	65133999	+	23.92569	NA	Intergenic	Intergenic	11620	NM_145719	220359	Hs.632121	NM_145719	HPRD:18187	TIGD3	-	tigger transposable element derived 3	protein-coding
19-PTNLD28-TUMOR_peak_98076	chr8	32078200	32078371	+	23.92360	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	194551	NR_104156	100856811	Hs.97362	NR_104156		NRG1-IT1	-	NRG1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90275	chr6	158635294	158635502	+	23.92360	NA	Intergenic	Intergenic	46019	NM_207118	404672	Hs.356224	NM_207118	HPRD:10581	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2	general transcription factor IIH, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_80051	chr5	57151713	57151953	+	23.92360	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	43156	NR_109900	101928539	Hs.639385	NR_109900	ENSG00000249584	LOC101928539	-	uncharacterized LOC101928539	ncRNA
19-PTNLD28-TUMOR_peak_18375	chr11	46004617	46005001	+	23.92360	NA	intron (NM_001101802, intron 5 of 17)	intron (NM_001101802, intron 5 of 17)	60582	NM_001300721	120071	Hs.86543	NM_152312	HPRD:13618	GYLTL1B	LARGE2	glycosyltransferase-like 1B	protein-coding
19-PTNLD28-TUMOR_peak_93816	chr7	87770319	87770646	+	23.92360	NA	intron (NM_004194, intron 14 of 28)	LTR72|LTR|ERV1	-75493	NR_120517	102723885	Hs.489040	NR_120517		LOC102723885	-	uncharacterized LOC102723885	ncRNA
19-PTNLD28-TUMOR_peak_21014	chr11	108131814	108131972	+	23.92360	NA	intron (NM_000051, intron 16 of 62)	L1PA2|LINE|L1	38334	NM_000051	472	Hs.367437	NM_000051	HPRD:06347	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_85689	chr6	17043105	17043287	+	23.92360	NA	Intergenic	L1ME1|LINE|L1	-59293	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80726	chr5	74199258	74199475	+	23.92360	NA	Intergenic	MER74A|LTR|ERVL	-36703	NM_015566	26049	Hs.91662	NM_015566	ENSG00000198780	FAM169A	SLAP75	family with sequence similarity 169, member A	protein-coding
19-PTNLD28-TUMOR_peak_27963	chr13	41444115	41444302	+	23.92261	NA	intron (NR_038259, intron 1 of 5)	L1PA3|LINE|L1	51678	NR_038259	100616668	Hs.660718	NR_038258		TPTE2P5	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_57482	chr2	191656418	191656559	+	23.92261	NA	Intergenic	Intergenic	-89059	NM_001256310	2744	Hs.116448	NM_014905	HPRD:00700	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
19-PTNLD28-TUMOR_peak_26507	chr12	117393561	117393797	+	23.91909	NA	intron (NM_012174, intron 4 of 10)	intron (NM_012174, intron 4 of 10)	31463	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
19-PTNLD28-TUMOR_peak_103057	chr9	38371584	38371732	+	23.91909	NA	Intergenic	Intergenic	-21003	NM_000692	219	Hs.436219	NM_000692	HPRD:00005	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
19-PTNLD28-TUMOR_peak_95859	chr7	140511016	140511316	+	23.91909	NA	intron (NM_004333, intron 3 of 17)	LTR55|LTR|ERV	113398	NM_004333	673	Hs.550061	NM_004333	HPRD:01264	BRAF	B-RAF1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_18325	chr11	45392819	45393015	+	23.91909	NA	promoter-TSS (NR_122071)	promoter-TSS (NR_122071)	-31	NR_122071	399886	Hs.559970	NR_122071	HPRD:13453	LOC399886	-	uncharacterized LOC399886	ncRNA
19-PTNLD28-TUMOR_peak_67662	chr3	40639059	40639198	+	23.91909	NA	Intergenic	Intergenic	72759	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_14435	chr10	77909899	77910571	+	23.91780	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	367716	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_73450	chr3	194903222	194903365	+	23.90520	NA	intron (NM_152531, intron 2 of 3)	intron (NM_152531, intron 2 of 3)	34693	NR_102711	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_2157	chr1	33181578	33181804	+	23.90119	NA	Intergenic	Intergenic	-13330	NM_030786	81493	Hs.712631	NM_030786	HPRD:18134	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
19-PTNLD28-TUMOR_peak_91404	chr7	17445557	17445735	+	23.89042	NA	intron (NR_110015, intron 1 of 2)	L2|LINE|L2	31105	NR_110015	102659288	Hs.559488	NR_110014		LOC102659288	-	uncharacterized LOC102659288	ncRNA
19-PTNLD28-TUMOR_peak_47931	chr19	17707782	17708174	+	23.87148	NA	Intergenic	HERVH-int|LTR|ERV1	41467	NM_024656	79709	Hs.418795	NM_024656	HPRD:07986	COLGALT1	GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_101593	chr8	144212562	144212879	+	23.84972	NA	Intergenic	Intergenic	28737	NM_002347	4062	Hs.159590	NM_002347	HPRD:04691	LY6H	NMLY6	lymphocyte antigen 6 complex, locus H	protein-coding
19-PTNLD28-TUMOR_peak_99802	chr8	102449784	102450015	+	23.84830	NA	Intergenic	Intergenic	-54769	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_6376	chr1	146152965	146153156	+	23.84813	NA	intron (NR_104217, intron 2 of 17).2	intron (NR_104217, intron 2 of 17).2	-70427	NR_110864	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_103595	chr9	69883038	69883359	+	23.84725	NA	Intergenic	LTR10A|LTR|ERV1	-125414	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_20410	chr11	85812889	85813478	+	23.84725	NA	Intergenic	MIR3|SINE|MIR	-32260	NM_001206947	8301	Hs.163893	NM_007166	HPRD:04320	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
19-PTNLD28-TUMOR_peak_95330	chr7	130692269	130692495	+	23.84725	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	94159	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_57604	chr2	196850217	196850386	+	23.84725	NA	intron (NM_018897, intron 14 of 64)	intron (NM_018897, intron 14 of 64)	83235	NM_018897	56171	Hs.97403	NM_018897	HPRD:10914	DNAH7	-	dynein, axonemal, heavy chain 7	protein-coding
19-PTNLD28-TUMOR_peak_43269	chr17	71356259	71356515	+	23.84725	NA	intron (NM_001144952, intron 39 of 44)	intron (NM_001144952, intron 39 of 44)	-48244	NM_012121	23580	Hs.3903	NM_012121	HPRD:08383	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
19-PTNLD28-TUMOR_peak_39978	chr17	7316673	7316964	+	23.84725	NA	intron (NM_020795, intron 2 of 6)	intron (NM_020795, intron 2 of 6)	5316	NM_020795	57555	Hs.26229	NM_020795	HPRD:07348	NLGN2	-	neuroligin 2	protein-coding
19-PTNLD28-TUMOR_peak_23064	chr12	12008616	12009132	+	23.84725	NA	intron (NM_001987, intron 4 of 7)	intron (NM_001987, intron 4 of 7)	70233	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_48090	chr19	18748799	18749174	+	23.84505	NA	intron (NM_018316, intron 1 of 2)	intron (NM_018316, intron 1 of 2)	1148	NM_018316	55295	Hs.250632	NM_018316	HPRD:07728	KLHL26	-	kelch-like family member 26	protein-coding
19-PTNLD28-TUMOR_peak_46715	chr19	3276287	3276793	+	23.84271	NA	intron (NR_033342, intron 4 of 12)	intron (NR_033342, intron 4 of 12)	51057	NR_033342	60680	Hs.655747	NM_021938	HPRD:12535	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP, Elav-like family member 5	protein-coding
19-PTNLD28-TUMOR_peak_71005	chr3	134346784	134346979	+	23.84057	NA	intron (NM_178554, intron 4 of 10)	intron (NM_178554, intron 4 of 10)	22983	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_7423	chr1	157668080	157668303	+	23.84057	NA	exon (NM_052939, exon 4 of 15)	exon (NM_052939, exon 4 of 15)	2456	NM_052939	115352	Hs.292449	NM_052939	HPRD:07352	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|SPAP2	Fc receptor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_74452	chr4	9709784	9709914	+	23.83473	NA	Intergenic	Intergenic	-73409	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_49590	chr19	47799498	47799656	+	23.83006	NA	Intergenic	Intergenic	-13527	NM_001736	728	Hs.2161	NM_001736	HPRD:00224	C5AR1	C5A|C5AR|C5R1|CD88	complement component 5a receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_89761	chr6	143160130	143160311	+	23.83006	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	106118	NM_006734	3097	Hs.510172	NM_006734	HPRD:00881	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_76100	chr4	86053806	86054015	+	23.83006	NA	Intergenic	L1PA16|LINE|L1	165939	NR_015359	404201	Hs.720920	NM_205857	HPRD:13317	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_59680	chr20	6014971	6015379	+	23.83006	NA	exon (NM_019095, exon 6 of 7)	exon (NM_019095, exon 6 of 7)	19551	NM_152611	164312	Hs.149133	NM_152611	HPRD:12784	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
19-PTNLD28-TUMOR_peak_44636	chr18	12237123	12237491	+	23.83006	NA	Intergenic	Intergenic	-17011	NM_001279	1149	Hs.249129	NM_001279		CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
19-PTNLD28-TUMOR_peak_52783	chr2	53814665	53814780	+	23.83006	NA	Intergenic	L1PA3|LINE|L1	-180207	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_67979	chr3	47365826	47366004	+	23.83006	NA	intron (NM_025010, intron 3 of 9)	intron (NM_025010, intron 3 of 9)	-41578	NM_022342	64147	Hs.373947	NM_022342	HPRD:07444	KIF9	-	kinesin family member 9	protein-coding
19-PTNLD28-TUMOR_peak_82914	chr5	143353171	143353321	+	23.83006	NA	Intergenic	AluY|SINE|Alu	161520	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_10214	chr1	222170402	222170564	+	23.83006	NA	Intergenic	AluJb|SINE|Alu	-254965	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_74601	chr4	15402450	15402949	+	23.83006	NA	intron (NM_001135171, intron 1 of 2)	intron (NM_001135171, intron 1 of 2)	26524	NM_001135171	114905	Hs.153714	NM_031911	HPRD:16633	C1QTNF7	CTRP7|ZACRP7	C1q and tumor necrosis factor related protein 7	protein-coding
19-PTNLD28-TUMOR_peak_68136	chr3	49530507	49530701	+	23.81562	NA	intron (NM_001165928, intron 4 of 5)	AluJo|SINE|Alu	23039	NM_001177644	1605	Hs.76111	NM_004393	HPRD:00546	DAG1	156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9	dystroglycan 1 (dystrophin-associated glycoprotein 1)	protein-coding
19-PTNLD28-TUMOR_peak_42382	chr17	53464281	53464596	+	23.81562	NA	Intergenic	Intergenic	34903	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_83503	chr5	157422005	157422171	+	23.81562	NA	Intergenic	Intergenic	-135905	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_74921	chr4	37220867	37221218	+	23.81562	NA	Intergenic	Intergenic	22571	NR_039965	100616435		NR_039965	miRBase:MI0017449	MIR4801	-	microRNA 4801	ncRNA
19-PTNLD28-TUMOR_peak_71842	chr3	154783438	154783654	+	23.81562	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-13890	NM_000902	4311	Hs.307734	NM_000902	HPRD:00392	MME	CALLA|CD10|NEP|SFE	membrane metallo-endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_66287	chr3	5094678	5095272	+	23.79705	NA	Intergenic	Intergenic	-68955	NM_018184	55207	Hs.250009	NM_018184	HPRD:12483	ARL8B	ARL10C|Gie1	ADP-ribosylation factor-like 8B	protein-coding
19-PTNLD28-TUMOR_peak_34043	chr15	66198842	66199095	+	23.78175	NA	intron (NM_032445, intron 20 of 22)	intron (NM_032445, intron 20 of 22)	37171	NM_004663	8766	Hs.321541	NM_004663	HPRD:05715	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_9357	chr1	202594659	202594820	+	23.78053	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	17842	NM_001136504	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_67746	chr3	42881228	42881478	+	23.77814	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	30389	NM_001296	1238	Hs.146346	NM_001296	HPRD:09095	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_71206	chr3	138846117	138846284	+	23.77814	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	23173	NR_026783	60467	Hs.512673	NM_021812	HPRD:16559	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_7977	chr1	167411437	167411661	+	23.77814	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	76298	NM_198053	919	Hs.156445	NM_000734	HPRD:01729	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
19-PTNLD28-TUMOR_peak_38375	chr16	67866976	67867140	+	23.77814	NA	intron (NM_025082, intron 4 of 15)	intron (NM_025082, intron 4 of 15)	-9155	NM_020457	57215	Hs.632200	NM_020457	HPRD:11629	THAP11	CTG-B43a|CTG-B45d|RONIN	THAP domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_20453	chr11	86399457	86399693	+	23.77814	NA	Intergenic	Intergenic	-15897	NM_001161586	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_12032	chr10	12095597	12095827	+	23.77814	NA	Intergenic	Intergenic	-10543	NM_080599	26019	Hs.370689	NM_015542	HPRD:10405	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_73688	chr3	197633005	197633244	+	23.77750	NA	intron (NM_032263, intron 9 of 11)	intron (NM_032263, intron 9 of 11)	43672	NM_001134435	84223	Hs.591675	NM_032263	HPRD:13746	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
19-PTNLD28-TUMOR_peak_84864	chr6	3177078	3177250	+	23.77433	NA	Intergenic	Intergenic	18837	NR_038296	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	ncRNA
19-PTNLD28-TUMOR_peak_82752	chr5	141071688	141072082	+	23.75550	NA	Intergenic	CpG	-10085	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_81005	chr5	82228671	82228885	+	23.75550	NA	Intergenic	L1PA3|LINE|L1	-73123	NR_105016	102546175		NR_105016		LINC01338	-	long intergenic non-protein coding RNA 1338	ncRNA
19-PTNLD28-TUMOR_peak_38112	chr16	58155787	58156031	+	23.75550	NA	intron (NM_013242, intron 1 of 5)	intron (NM_013242, intron 1 of 5)	7387	NM_013242	29105	Hs.532755	NM_013242	HPRD:13616	CFAP20	C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
19-PTNLD28-TUMOR_peak_71384	chr3	141747271	141747530	+	23.75550	NA	intron (NM_001178139, intron 3 of 12)	intron (NM_001178139, intron 3 of 12)	107	NM_001178142	7029	Hs.379018	NM_006286	HPRD:03696	TFDP2	DP2	transcription factor Dp-2 (E2F dimerization partner 2)	protein-coding
19-PTNLD28-TUMOR_peak_53299	chr2	69799902	69800166	+	23.75550	NA	intron (NM_014911, intron 2 of 21)	intron (NM_014911, intron 2 of 21)	-52731	NR_003705	100124535	Hs.693447	NR_003705		SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
19-PTNLD28-TUMOR_peak_36682	chr16	20394775	20394952	+	23.73669	NA	intron (NM_174924, intron 3 of 11)	intron (NM_174924, intron 3 of 11)	21170	NM_174924	204474	Hs.376025	NM_174924	HPRD:15111	PDILT	PDIA7	protein disulfide isomerase-like, testis expressed	protein-coding
19-PTNLD28-TUMOR_peak_63510	chr21	39820610	39821051	+	23.73669	NA	intron (NM_001243432, intron 3 of 11)	intron (NM_001243432, intron 3 of 11)	49598	NM_001136155	2078	Hs.473819	NM_004449	HPRD:01298	ERG	erg-3|p55	v-ets avian erythroblastosis virus E26 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_56074	chr2	140675341	140675706	+	23.73669	NA	Intergenic	LTR67B|LTR|ERVL	1020629	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_987	chr1	15655733	15655911	+	23.71648	NA	intron (NM_052929, intron 13 of 30)	intron (NM_052929, intron 13 of 30)	-80569	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_103335	chr9	45792561	45792725	+	23.71560	NA	Intergenic	MER115|DNA|hAT-Tip100	-324300	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_50056	chr19	51685357	51685557	+	23.71560	NA	promoter-TSS (NR_110732)	promoter-TSS (NR_110732)	-235	NR_110732	101928517	Hs.707693	NR_110732	ENSG00000269072	LOC101928517	-	uncharacterized LOC101928517	ncRNA
19-PTNLD28-TUMOR_peak_97314	chr8	17020245	17020888	+	23.71560	NA	intron (NM_016353, intron 1 of 12)	intron (NM_016353, intron 1 of 12)	6730	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	zinc finger, DHHC-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_101723	chr8	145223811	145224047	+	23.71560	NA	intron (NM_001099281, intron 3 of 11)	intron (NM_001099281, intron 3 of 11)	20381	NM_001288814	727957	Hs.443139	NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat-like repeat family member 1	protein-coding
19-PTNLD28-TUMOR_peak_35736	chr16	1795288	1795885	+	23.71560	NA	intron (NM_015133, intron 5 of 31)	MER20|DNA|hAT-Charlie	10600	NR_036138	100423012		NR_036138		MIR3177	-	microRNA 3177	ncRNA
19-PTNLD28-TUMOR_peak_61619	chr20	47299098	47299562	+	23.71560	NA	intron (NM_020820, intron 10 of 39)	intron (NM_020820, intron 10 of 39)	145090	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_5213	chr1	101754102	101754271	+	23.71280	NA	Intergenic	Intergenic	51881	NM_001400	1901	Hs.154210	NM_001400	HPRD:03578	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_104378	chr9	90381711	90381962	+	23.71280	NA	Intergenic	MER31A|LTR|ERV1	-5994	NR_027917	392360	Hs.690450	NM_001023564	HPRD:18619	CTSL3P	CTSL3|HCTSL-s	cathepsin L family member 3, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_16371	chr10	134858024	134858337	+	23.71280	NA	Intergenic	Intergenic	42021	NR_111905	100128127	Hs.694139	NR_111905		LOC100128127	-	uncharacterized LOC100128127	ncRNA
19-PTNLD28-TUMOR_peak_55943	chr2	136783115	136783453	+	23.71280	NA	Intergenic	Intergenic	-40030	NM_001293312	1615	Hs.503787	NM_001349	HPRD:04361	DARS	HBSL|aspRS	aspartyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_3732	chr1	56555816	56555943	+	23.71280	NA	Intergenic	L1PA3|LINE|L1	489378	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_15313	chr10	103880198	103880609	+	23.71143	NA	promoter-TSS (NM_001113407)	promoter-TSS (NM_001113407)	-193	NM_001113407	8861	Hs.454418	NM_003893	HPRD:09144	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
19-PTNLD28-TUMOR_peak_18626	chr11	57062158	57062594	+	23.70893	NA	Intergenic	Intergenic	30037	NM_033396	85456	Hs.530730	NM_033396	HPRD:06164	TNKS1BP1	TAB182	tankyrase 1 binding protein 1, 182kDa	protein-coding
19-PTNLD28-TUMOR_peak_82940	chr5	145234308	145234561	+	23.70893	NA	Intergenic	Intergenic	18097	NM_001080516	643226	Hs.570895	NM_001080516	ENSG00000204928	GRXCR2	DFNB101	glutaredoxin, cysteine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_20559	chr11	91760011	91760307	+	23.70689	NA	Intergenic	L1PA2|LINE|L1	-325103	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_100262	chr8	118918218	118918403	+	23.70689	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	205748	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_97811	chr8	27115978	27116135	+	23.70689	NA	promoter-TSS (NM_001283053)	promoter-TSS (NM_001283053)	-100	NM_001283054	81551	Hs.201058	NM_030795	HPRD:18120	STMN4	RB3	stathmin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_77344	chr4	142557461	142558364	+	23.69564	NA	non-coding (NR_037840, exon 1 of 8)	non-coding (NR_037840, exon 1 of 8)	163	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_14647	chr10	83632058	83632191	+	23.69208	NA	Intergenic	Intergenic	-2946	NM_001165972	10718	Hs.125119	NM_001010848	HPRD:16115	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
19-PTNLD28-TUMOR_peak_75470	chr4	58098043	58098219	+	23.67105	NA	Intergenic	Intergenic	-121580	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_72315	chr3	170979377	170979544	+	23.67105	NA	intron (NM_001161565, intron 2 of 30)	intron (NM_001161565, intron 2 of 30)	-154912	NR_030295	693154		NR_030295		MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
19-PTNLD28-TUMOR_peak_87268	chr6	38738978	38739405	+	23.67105	NA	intron (NM_001206927, intron 12 of 92)	L1MB8|LINE|L1	56074	NM_001206927	1769	Hs.520106	NM_001371	HPRD:04515	DNAH8	ATPase|hdhc9	dynein, axonemal, heavy chain 8	protein-coding
19-PTNLD28-TUMOR_peak_24180	chr12	50468999	50469286	+	23.65919	NA	intron (NM_001256830, intron 1 of 9)	intron (NM_001256830, intron 1 of 9)	1774	NM_001256830	41	Hs.274361	NM_001095	HPRD:04182	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
19-PTNLD28-TUMOR_peak_42635	chr17	57435412	57435608	+	23.65919	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	-7934	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	ncRNA
19-PTNLD28-TUMOR_peak_24918	chr12	63025454	63025965	+	23.65756	NA	Intergenic	CpG	28243	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_62567	chr20	61866191	61866350	+	23.65756	NA	promoter-TSS (NM_022161)	promoter-TSS (NM_022161)	-965	NM_022161	79444	Hs.256126	NM_022161	HPRD:05761	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
19-PTNLD28-TUMOR_peak_31081	chr14	70295216	70295399	+	23.65756	NA	Intergenic	Intergenic	-31301	NM_003049	6554	Hs.952	NM_003049		SLC10A1	NTCP	solute carrier family 10 (sodium/bile acid cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_96309	chr7	150595338	150595512	+	23.65504	NA	Intergenic	Intergenic	45860	NM_001091	26	Hs.647097	NM_001091	HPRD:00088	AOC1	ABP|ABP1|DAO|DAO1|KAO	amine oxidase, copper containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71903	chr3	156349138	156349343	+	23.65343	NA	Intergenic	Intergenic	-42965	NM_015508	25976	Hs.744050	NM_015508	HPRD:18192	TIPARP	ARTD14|PARP7|pART14	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
19-PTNLD28-TUMOR_peak_36184	chr16	9615865	9616126	+	23.64990	NA	Intergenic	Intergenic	42253	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_88679	chr6	88875689	88876608	+	23.64990	NA	promoter-TSS (NM_001160259)	promoter-TSS (NM_001160259)	-381	NM_001160258	1268	Hs.75110	NM_016083	HPRD:00259	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_85644	chr6	16260974	16261242	+	23.64505	NA	intron (NM_006877, intron 4 of 8)	HERVH-int|LTR|ERV1	22297	NM_006877	2766	Hs.484741	NM_006877	HPRD:00754	GMPR	GMPR1	guanosine monophosphate reductase	protein-coding
19-PTNLD28-TUMOR_peak_93864	chr7	90040923	90041157	+	23.64466	NA	intron (NM_001185073, intron 2 of 2)	intron (NM_001185073, intron 2 of 2)	8392	NM_012129	9069	Hs.731917	NM_012129	HPRD:13064	CLDN12	-	claudin 12	protein-coding
19-PTNLD28-TUMOR_peak_47125	chr19	9316293	9316481	+	23.64466	NA	Intergenic	LTR13|LTR|ERVK	9160	NM_001005191	125958	Hs.446910	NM_001005191	HPRD:15073	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	olfactory receptor, family 7, subfamily D, member 4	protein-coding
19-PTNLD28-TUMOR_peak_32215	chr14	103820918	103821345	+	23.64466	NA	Intergenic	Intergenic	16945	NR_002964	677811	Hs.658237	NR_002964		SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
19-PTNLD28-TUMOR_peak_27769	chr13	33694093	33694286	+	23.64466	NA	intron (NM_178006, intron 7 of 13)	intron (NM_178006, intron 7 of 13)	66027	NM_001243466	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_77983	chr4	169526660	169526807	+	23.63573	NA	intron (NM_016081, intron 2 of 20)	intron (NM_016081, intron 2 of 20)	-26035	NM_001166109	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_5242	chr1	104243342	104243538	+	23.63240	NA	Intergenic	HERVE_a-int|LTR|ERV1	-4367	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_97449	chr8	19977201	19977545	+	23.61504	NA	Intergenic	Intergenic	63344	NM_001142325	6570	Hs.158322	NM_003053	HPRD:01897	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 (vesicular monoamine transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_29373	chr14	21505031	21505256	+	23.61504	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-2199	NM_001012264	440163	Hs.666729	NM_001012264	HPRD:17980	RNASE13	HEL-S-86p|RAL1	ribonuclease, RNase A family, 13 (non-active)	protein-coding
19-PTNLD28-TUMOR_peak_95921	chr7	141799278	141799421	+	23.61504	NA	intron (NM_004668, intron 43 of 47)	intron (NM_004668, intron 43 of 47)	-12200	NM_001293626	93432	Hs.647098	NM_001008748	ENSG00000257743	LOC93432	-	maltase-glucoamylase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_1252	chr1	20198799	20199094	+	23.61504	NA	Intergenic	Intergenic	-9942	NM_015207	23252	Hs.374987	NM_015207	ENSG00000169914	OTUD3	DUBA4	OTU deubiquitinase 3	protein-coding
19-PTNLD28-TUMOR_peak_106228	chr9	130785244	130785448	+	23.61140	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-42534	NM_001035254	399665	Hs.535972	NM_203305	HPRD:13262	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102, member A	protein-coding
19-PTNLD28-TUMOR_peak_1617	chr1	26034844	26035125	+	23.61140	NA	intron (NM_001289010, intron 2 of 11)	MER41B|LTR|ERV1	91025	NM_020379	57134	Hs.197043	NM_020379		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase, alpha, class 1C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_109276	chrX	118018588	118018903	+	23.61140	NA	Intergenic	LTR71A|LTR|ERV1	45226	NR_110393	101928287	Hs.496647	NR_110393	ENSG00000203650	LINC01285	-	long intergenic non-protein coding RNA 1285	ncRNA
19-PTNLD28-TUMOR_peak_61130	chr20	40153935	40154137	+	23.61140	NA	intron (NM_032221, intron 3 of 36)	intron (NM_032221, intron 3 of 36)	93097	NM_032221	84181	Hs.740645	NM_032221	HPRD:13049	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_14819	chr10	90791950	90792237	+	23.61140	NA	Intergenic	Intergenic	-31000	NR_039826	100616128		NR_039826		MIR4679-1	-	microRNA 4679-1	ncRNA
19-PTNLD28-TUMOR_peak_69003	chr3	72204770	72204984	+	23.61140	NA	intron (NR_038221, intron 1 of 2)	intron (NR_038221, intron 1 of 2)	4469	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
19-PTNLD28-TUMOR_peak_14797	chr10	89917737	89917889	+	23.61140	NA	Intergenic	Intergenic	294618	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
19-PTNLD28-TUMOR_peak_44504	chr18	9631871	9632119	+	23.61140	NA	Intergenic	Intergenic	16733	NR_110774	101927323	Hs.151204	NR_110773	ENSG00000263627	PPP4R1-AS1	-	PPP4R1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3936	chr1	61750063	61750220	+	23.60785	NA	intron (NM_001145511, intron 3 of 10)	intron (NM_001145511, intron 3 of 10)	-30951	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62358	chr20	57130240	57130440	+	23.60223	NA	intron (NR_034147, intron 6 of 6)	intron (NR_034147, intron 6 of 6)	39905	NR_034147	149773	Hs.685214	NR_034147	ENSG00000231290	APCDD1L-AS1	-	APCDD1L antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_24760	chr12	57607189	57607341	+	23.60163	NA	TTS (NM_002332)	TTS (NM_002332)	-3313	NM_007224	11247	Hs.745023	NM_007224	HPRD:06866	NXPH4	NPH4	neurexophilin 4	protein-coding
19-PTNLD28-TUMOR_peak_49535	chr19	47299497	47300016	+	23.59668	NA	Intergenic	Intergenic	-7914	NM_005628	6510	Hs.631582	NM_005628	HPRD:00173	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_107572	chrX	13046991	13047368	+	23.58785	NA	Intergenic	Intergenic	15738	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_85328	chr6	11216032	11216276	+	23.58448	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	16761	NM_182966	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_97598	chr8	22446500	22446837	+	23.56071	NA	intron (NM_176871, intron 5 of 9)	intron (NM_176871, intron 5 of 9)	8681	NM_176871	64236	Hs.632034	NM_021630	HPRD:17831	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
19-PTNLD28-TUMOR_peak_71682	chr3	150032440	150032784	+	23.55300	NA	intron (NR_110187, intron 1 of 1)	intron (NR_110187, intron 1 of 1)	8922	NR_110186	101928022	Hs.555199	NR_110186	ENSG00000243550	LINC01214	-	long intergenic non-protein coding RNA 1214	ncRNA
19-PTNLD28-TUMOR_peak_89013	chr6	108910645	108910905	+	23.55300	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	28706	NM_001455	2309	Hs.220950	NM_001455	HPRD:04061	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
19-PTNLD28-TUMOR_peak_76779	chr4	119903055	119903252	+	23.54604	NA	intron (NM_001128934, intron 1 of 4)	intron (NM_001128934, intron 1 of 4)	93157	NM_001128933	171024	Hs.655519	NM_133477	HPRD:15456	SYNPO2	-	synaptopodin 2	protein-coding
19-PTNLD28-TUMOR_peak_11193	chr1	237360893	237361055	+	23.54604	NA	intron (NM_001035, intron 1 of 104)	intron (NM_001035, intron 1 of 104)	155272	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_16078	chr10	125047469	125047663	+	23.54604	NA	Intergenic	Intergenic	133806	NM_004725	9184	Hs.418533	NM_004725	HPRD:04761	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
19-PTNLD28-TUMOR_peak_43065	chr17	65506190	65506364	+	23.54604	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	132880	NM_012417	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_80075	chr5	57762864	57763026	+	23.54604	NA	Intergenic	Intergenic	-6979	NM_001252226	10769	Hs.398157	NM_006622	HPRD:06118	PLK2	SNK|hPlk2|hSNK	polo-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_76268	chr4	91467332	91467619	+	23.54604	NA	intron (NM_207491, intron 5 of 7)	intron (NM_207491, intron 5 of 7)	311293	NM_207491	401145	Hs.654735	NM_207491	HPRD:17561	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20349	chr11	81791333	81791470	+	23.54604	NA	intron (NR_120571, intron 5 of 7)	intron (NR_120571, intron 5 of 7)	-189523	NR_036186	100422823		NR_036186	miRBase:MI0015831	MIR4300	-	microRNA 4300	ncRNA
19-PTNLD28-TUMOR_peak_50712	chr2	115456	115614	+	23.54604	NA	Intergenic	Intergenic	-68947	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_18557	chr11	51170143	51170268	+	23.54604	NA	Intergenic	L1PA2|LINE|L1	242243	NM_001005272	81318	Hs.554531	NM_001005272	HPRD:17719	OR4A5	OR11-111	olfactory receptor, family 4, subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_66666	chr3	12558680	12558866	+	23.54604	NA	intron (NM_001145394, intron 8 of 12)	AluSc8|SINE|Alu	28190	NM_001195279	100129480	Hs.572974	NM_001195279		MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_102618	chr9	31598074	31598256	+	23.54604	NA	Intergenic	Intergenic	-786436	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_99475	chr8	91411137	91411332	+	23.54604	NA	Intergenic	L1PA3|LINE|L1	177518	NR_051989	100874052	Hs.571514	NR_051989	ENSG00000253394	LINC00534	-	long intergenic non-protein coding RNA 534	ncRNA
19-PTNLD28-TUMOR_peak_36196	chr16	9948528	9948752	+	23.54604	NA	intron (NM_000833, intron 5 of 13)	intron (NM_000833, intron 5 of 13)	-290392	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_93600	chr7	78685452	78685650	+	23.54604	NA	intron (NM_001301128, intron 1 of 20)	AluJr|SINE|Alu	47247	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_58291	chr2	217173351	217173530	+	23.54604	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	63310	NM_020814	57574	Hs.170388	NM_020814	HPRD:16299	MARCH4	MARCH-IV|RNF174	membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_67037	chr3	18558005	18558129	+	23.54604	NA	intron (NR_125803, intron 4 of 6)	L1HS|LINE|L1	71338	NR_125803	101927777	Hs.543235	NR_125803		SATB1-AS1	-	SATB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83034	chr5	147143782	147143991	+	23.54604	NA	intron (NM_001270941, intron 1 of 21)	intron (NM_001270941, intron 1 of 21)	18525	NM_014790	9832	Hs.740461	NM_014790	HPRD:11090	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_109336	chrX	119683890	119684081	+	23.54604	NA	intron (NM_003588, intron 4 of 21)	intron (NM_003588, intron 4 of 21)	10832	NM_001079872	8450	Hs.102914	NM_003588	HPRD:02251	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
19-PTNLD28-TUMOR_peak_27122	chr12	127970189	127970338	+	23.54604	NA	Intergenic	HERVE-int|LTR|ERV1	-145646	NR_110057	101927616	Hs.637827	NR_110057	ENSG00000256362	LOC101927616	-	uncharacterized LOC101927616	ncRNA
19-PTNLD28-TUMOR_peak_23290	chr12	18318548	18318728	+	23.54604	NA	Intergenic	MER57-int|LTR|ERV1	-75511	NM_024730	79785	Hs.732831	NM_024730	HPRD:08659	RERGL	-	RERG/RAS-like	protein-coding
19-PTNLD28-TUMOR_peak_33061	chr15	36038412	36038603	+	23.54604	NA	intron (NR_038251, intron 2 of 2)	intron (NR_038251, intron 2 of 2)	-180550	NR_039735	100616293		NR_039735	miRBase:MI0016876	MIR4510	-	microRNA 4510	ncRNA
19-PTNLD28-TUMOR_peak_105448	chr9	114783077	114783221	+	23.54604	NA	intron (NR_036085, intron 3 of 3)	intron (NR_036085, intron 3 of 3)	88769	NR_039814	100616114		NR_039814		MIR4668	-	microRNA 4668	ncRNA
19-PTNLD28-TUMOR_peak_53890	chr2	86611062	86611308	+	23.54604	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-45979	NM_001164730	65055	Hs.368884	NM_022912	HPRD:07810	REEP1	C2orf23|HMN5B|SPG31	receptor accessory protein 1	protein-coding
19-PTNLD28-TUMOR_peak_65182	chr22	32401579	32401806	+	23.54604	NA	Intergenic	Intergenic	-37327	NM_000343	6523	Hs.1964	NM_000343	HPRD:01668	SLC5A1	D22S675|NAGT|SGLT1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_46167	chr18	65093026	65093294	+	23.54604	NA	Intergenic	LTR40a|LTR|ERVL	-90623	NR_033921	643542	Hs.652901	NR_033921	ENSG00000265533	LOC643542	-	uncharacterized LOC643542	ncRNA
19-PTNLD28-TUMOR_peak_18146	chr11	38702304	38702575	+	23.54604	NA	Intergenic	Intergenic	32031	NR_120553	101928536	Hs.144776	NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
19-PTNLD28-TUMOR_peak_37612	chr16	46707427	46707551	+	23.54604	NA	intron (NM_018206, intron 10 of 16)	intron (NM_018206, intron 10 of 16)	15655	NM_018206	55737	Hs.454528	NM_018206		VPS35	MEM3|PARK17	vacuolar protein sorting 35 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_76302	chr4	95461669	95461864	+	23.54604	NA	intron (NM_001011513, intron 3 of 12)	intron (NM_001011513, intron 3 of 12)	88758	NM_001011515	10611	Hs.480311	NM_006457	HPRD:05799	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
19-PTNLD28-TUMOR_peak_48564	chr19	33921694	33921825	+	23.54604	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	56329	NM_001252296	1054	Hs.429666	NM_001806	HPRD:00738	CEBPG	GPE1BP|IG/EBP-1	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding
19-PTNLD28-TUMOR_peak_41341	chr17	38195157	38195314	+	23.54604	NA	intron (NR_052017, intron 3 of 24)	intron (NR_052017, intron 3 of 24)	-11337	NR_102369	101340251		NR_102369		SNORD124	-	small nucleolar RNA, C/D box 124	snoRNA
19-PTNLD28-TUMOR_peak_27258	chr12	132486015	132486331	+	23.54604	NA	intron (NM_015409, intron 12 of 52)	LTR13|LTR|ERVK	-29596	NR_002979	677829	Hs.742405	NR_002979		SNORA49	ACA49	small nucleolar RNA, H/ACA box 49	snoRNA
19-PTNLD28-TUMOR_peak_85335	chr6	11263628	11263963	+	23.54604	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-30880	NM_001271033	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_30477	chr14	56486211	56486328	+	23.54604	NA	Intergenic	L1PA3|LINE|L1	-98824	NM_021255	57161	Hs.657926	NM_021255	HPRD:17835	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_71309	chr3	140700524	140700690	+	23.54604	NA	Intergenic	Intergenic	39945	NM_001104647	55186	Hs.144130	NM_018155	HPRD:07688	SLC25A36	PNC2	solute carrier family 25 (pyrimidine nucleotide carrier ), member 36	protein-coding
19-PTNLD28-TUMOR_peak_86085	chr6	26097643	26097805	+	23.54604	NA	Intergenic	Intergenic	-6452	NM_003542	8364	Hs.46423	NM_003542		HIST1H4C	H4/g|H4FG|dJ221C16.1	histone cluster 1, H4c	protein-coding
19-PTNLD28-TUMOR_peak_27587	chr13	28366580	28366754	+	23.54604	NA	promoter-TSS (NM_145657)	promoter-TSS (NM_145657)	-113	NM_145657	219409	Hs.351785	NM_145657		GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_35350	chr15	95790366	95790568	+	23.54604	NA	Intergenic	Intergenic	79862	NR_034095	400456	Hs.536404	NR_034095	ENSG00000248441	LINC01197	-	long intergenic non-protein coding RNA 1197	ncRNA
19-PTNLD28-TUMOR_peak_25942	chr12	104907439	104907953	+	23.54604	NA	intron (NM_018413, intron 1 of 2)	MSTB1|LTR|ERVL-MaLR	57004	NM_018413	50515	Hs.17569	NM_018413	HPRD:13055	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate (chondroitin 4) sulfotransferase 11	protein-coding
19-PTNLD28-TUMOR_peak_108118	chrX	46106973	46107186	+	23.54604	NA	Intergenic	Intergenic	80030	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_74675	chr4	18070787	18070925	+	23.54604	NA	Intergenic	Intergenic	-47373	NM_153686	254251	Hs.446201	NM_153686	HPRD:10088	LCORL	MLR1	ligand dependent nuclear receptor corepressor-like	protein-coding
19-PTNLD28-TUMOR_peak_102460	chr9	21789569	21789741	+	23.54604	NA	Intergenic	Intergenic	-12980	NM_002451	4507	Hs.193268	NM_002451	HPRD:01134	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
19-PTNLD28-TUMOR_peak_30227	chr14	50968428	50968641	+	23.54604	NA	intron (NM_006575, intron 3 of 31)	L2a|LINE|L2	30842	NM_006575	11183	Hs.130491	NM_006575	HPRD:05374	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_23761	chr12	38577530	38577750	+	23.54604	NA	Intergenic	L1M1|LINE|L1	-132917	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_9152	chr1	200772163	200772316	+	23.54604	NA	intron (NM_001297708, intron 2 of 16)	intron (NM_001297708, intron 2 of 16)	63553	NM_001297707	23271	Hs.23585	NM_203459	HPRD:11124	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin-associated protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_73477	chr3	195293796	195293951	+	23.54604	NA	Intergenic	Intergenic	17203	NM_001647	347	Hs.522555	NM_001647	HPRD:00134	APOD	-	apolipoprotein D	protein-coding
19-PTNLD28-TUMOR_peak_98927	chr8	59763512	59763670	+	23.54604	NA	intron (NM_014729, intron 4 of 8)	intron (NM_014729, intron 4 of 8)	-191187	NM_003580	8439	Hs.372000	NM_003580	HPRD:09117	NSMAF	FAN	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
19-PTNLD28-TUMOR_peak_104257	chr9	87863512	87863732	+	23.54604	NA	Intergenic	Intergenic	493322	NM_001286715	23287	Hs.719980	NM_015239	HPRD:08442	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_93684	chr7	81823435	81823619	+	23.54604	NA	intron (NM_000722, intron 3 of 38)	intron (NM_000722, intron 3 of 38)	185034	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
19-PTNLD28-TUMOR_peak_67468	chr3	34053640	34053886	+	23.54604	NA	Intergenic	Intergenic	213700	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_13270	chr10	45241517	45241698	+	23.54604	NA	Intergenic	MER4B|LTR|ERV1	-165157	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_29957	chr14	37233438	37233591	+	23.54604	NA	intron (NM_030631, intron 3 of 9)	LTR88c|LTR|Gypsy?	106741	NM_006194	5083	Hs.132576	NM_006194	HPRD:01336	PAX9	STHAG3	paired box 9	protein-coding
19-PTNLD28-TUMOR_peak_27201	chr12	131432795	131433016	+	23.54604	NA	Intergenic	LTR9|LTR|ERV1	-5547	NM_198827	283383	Hs.719239	NM_198827	HPRD:17061	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
19-PTNLD28-TUMOR_peak_79661	chr5	41270638	41270772	+	23.54604	NA	Intergenic	Intergenic	-9165	NM_001115131	729	Hs.481992	NM_000065	HPRD:01956	C6	-	complement component 6	protein-coding
19-PTNLD28-TUMOR_peak_68482	chr3	55569042	55569183	+	23.54604	NA	intron (NM_015576, intron 16 of 16)	intron (NM_015576, intron 16 of 16)	-47442	NM_003392	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_39737	chr17	3221637	3221923	+	23.54604	NA	Intergenic	Intergenic	8241	NR_024128	390756	Hs.632245	NM_001005334	HPRD:14957	OR3A4P	OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P	olfactory receptor, family 3, subfamily A, member 4 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109478	chrX	131267206	131267335	+	23.54604	NA	Intergenic	L1PA3|LINE|L1	-5220	NM_194277	90167	Hs.170776	NM_194277	HPRD:06624	FRMD7	NYS|NYS1|XIPAN	FERM domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_79976	chr5	55743175	55743352	+	23.54604	NA	Intergenic	Intergenic	34333	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_99116	chr8	70120985	70121176	+	23.54604	NA	Intergenic	Intergenic	-104655	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LOC100505718	-	uncharacterized LOC100505718	ncRNA
19-PTNLD28-TUMOR_peak_69999	chr3	117827775	117827912	+	23.54604	NA	Intergenic	Intergenic	-834080	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99696	chr8	101037359	101037591	+	23.54604	NA	intron (NM_015668, intron 14 of 27)	intron (NM_015668, intron 14 of 27)	80379	NM_001286693	26166	Hs.120021	NM_015668	HPRD:13155	RGS22	CT145|PRTD-NY2	regulator of G-protein signaling 22	protein-coding
19-PTNLD28-TUMOR_peak_3487	chr1	52126778	52126944	+	23.54604	NA	intron (NR_036662, intron 2 of 22)	intron (NR_036662, intron 2 of 22)	44315	NM_148906	114883	Hs.21938	NM_024586	HPRD:09479	OSBPL9	ORP-9|ORP9	oxysterol binding protein-like 9	protein-coding
19-PTNLD28-TUMOR_peak_5548	chr1	112247503	112247648	+	23.54604	NA	intron (NM_001010935, intron 7 of 8)	intron (NM_001010935, intron 7 of 8)	34471	NM_019099	55924	Hs.193406	NM_019099	HPRD:14246	FAM212B	C1orf183	family with sequence similarity 212, member B	protein-coding
19-PTNLD28-TUMOR_peak_107575	chrX	13119910	13120154	+	23.54604	NA	Intergenic	Intergenic	-57115	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_89783	chr6	143654325	143654494	+	23.54604	NA	intron (NM_001286587, intron 5 of 6)	intron (NM_001286587, intron 5 of 6)	109405	NM_001286259	134637	Hs.709561	NM_182503		ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase, tRNA-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_76147	chr4	87628207	87628615	+	23.54604	NA	intron (NM_080685, intron 7 of 47)	intron (NM_080685, intron 7 of 47)	112943	NM_080685	5783	Hs.436142	NM_006264	HPRD:02602	PTPN13	FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E	protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)	protein-coding
19-PTNLD28-TUMOR_peak_59721	chr20	8447491	8447714	+	23.54604	NA	intron (NM_015192, intron 3 of 31)	AluSz|SINE|Alu	334690	NM_015192	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_65788	chr22	43345227	43345392	+	23.54604	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	-2262	NM_007229	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_31504	chr14	81431545	81431742	+	23.54604	NA	intron (NM_001018036, intron 1 of 8)	LTR3B_|LTR|ERVK	9774	NM_000369	7253	Hs.160411	NM_000369	HPRD:04537	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_69524	chr3	105015496	105015655	+	23.54604	NA	Intergenic	L1PA3|LINE|L1	-69982	NM_001243283	214	Hs.591293	NM_001627	HPRD:03389	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_78472	chr4	189733916	189734079	+	23.54604	NA	Intergenic	Intergenic	357265	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_93668	chr7	80820447	80820603	+	23.54604	NA	Intergenic	ERVL-E-int|LTR|ERVL	-271858	NM_006379	10512	Hs.269109	NM_006379	HPRD:04034	SEMA3C	SEMAE|SemE	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
19-PTNLD28-TUMOR_peak_28730	chr13	96267273	96267466	+	23.54604	NA	intron (NM_014934, intron 10 of 21)	intron (NM_014934, intron 10 of 21)	29591	NM_014934	22873	Hs.656580	NM_014934	HPRD:16363	DZIP1	DZIP|DZIPt1	DAZ interacting zinc finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108999	chrX	102087693	102087860	+	23.54604	NA	intron (NR_038988, intron 4 of 7)	intron (NR_038988, intron 4 of 7)	63681	NR_038988	100287765	Hs.687084	NR_038988	ENSG00000223546	LINC00630	LL0XNC01-157D4.1|LL0XNC01-237H1.2	long intergenic non-protein coding RNA 630	ncRNA
19-PTNLD28-TUMOR_peak_50861	chr2	4690952	4691105	+	23.54604	NA	intron (NR_034134, intron 3 of 4)	L1PA2|LINE|L1	12784	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
19-PTNLD28-TUMOR_peak_25713	chr12	96894909	96895094	+	23.54604	NA	Intergenic	Intergenic	-100635	NM_001170464	5128	Hs.506415	NM_002595	HPRD:09141	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
19-PTNLD28-TUMOR_peak_38853	chr16	78706297	78706444	+	23.54604	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	573060	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_24921	chr12	63054557	63054886	+	23.53993	NA	intron (NM_020700, intron 9 of 9)	intron (NM_020700, intron 9 of 9)	57255	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_56547	chr2	159901348	159901530	+	23.53993	NA	intron (NM_001145909, intron 2 of 26)	intron (NM_001145909, intron 2 of 26)	76293	NM_033394	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_1071	chr1	16515579	16515804	+	23.53989	NA	Intergenic	Intergenic	23413	NM_153213	128272	Hs.591532	NM_153213	HPRD:10659	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding
19-PTNLD28-TUMOR_peak_91713	chr7	26196085	26196296	+	23.53728	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	4343	NM_004289	9603	Hs.404741	NM_004289	HPRD:09162	NFE2L3	NRF3	nuclear factor, erythroid 2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_10868	chr1	232281560	232281828	+	23.51948	NA	Intergenic	UCON17|Unknown|Unknown	-327431	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20940	chr11	105808108	105808392	+	23.51203	NA	intron (NM_000829, intron 14 of 16)	intron (NM_000829, intron 14 of 16)	84704	NM_032424	84437	Hs.266782	NM_032424	HPRD:11163	MSANTD4	KIAA1826	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
19-PTNLD28-TUMOR_peak_13184	chr10	43624803	43625042	+	23.51203	NA	3' UTR (NM_020975, exon 20 of 20)	3' UTR (NM_020975, exon 20 of 20)	-8971	NM_018590	55454	Hs.657569	NM_018590	HPRD:11348	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_104823	chr9	99437209	99437646	+	23.51203	NA	Intergenic	Intergenic	-19828	NM_153698	195827	Hs.44640	NM_153698		AAED1	C9orf21	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_11996	chr10	11387829	11388070	+	23.51203	NA	Intergenic	MER66C|LTR|ERV1	180956	NM_001083591	10659	Hs.309288	NM_006561	HPRD:03964	CELF2	BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_22802	chr12	6844813	6845105	+	23.50593	NA	Intergenic	L1MD2|LINE|L1	11510	NM_001164093	50813	Hs.530823	NM_016319	HPRD:16736	COPS7A	CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding
19-PTNLD28-TUMOR_peak_64029	chr21	46579055	46579215	+	23.50593	NA	intron (NR_027673, intron 3 of 12)	THE1B|LTR|ERVL-MaLR	84642	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_22388	chr12	719450	719636	+	23.50593	NA	promoter-TSS (NM_001294345)	promoter-TSS (NM_001294345)	36	NM_001294345	4815	Hs.655804	NM_016533	HPRD:09530	NINJ2	-	ninjurin 2	protein-coding
19-PTNLD28-TUMOR_peak_47284	chr19	11079507	11079745	+	23.49627	NA	intron (NM_003072, intron 1 of 34)	intron (NM_003072, intron 1 of 34)	7818	NM_001128849	6597	Hs.327527	NM_003072	HPRD:04459	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
19-PTNLD28-TUMOR_peak_10510	chr1	226735520	226735721	+	23.49595	NA	promoter-TSS (NM_001003665)	promoter-TSS (NM_001003665)	-881	NM_001003665	375057	Hs.116827	NM_001003665	HPRD:16821	C1orf95	-	chromosome 1 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_106818	chr9	140013226	140013555	+	23.49028	NA	Intergenic	LTR13|LTR|ERVK	-4195	NM_013379	29952	Hs.37916	NM_013379	HPRD:07634	DPP7	DPP2|DPPII|QPP	dipeptidyl-peptidase 7	protein-coding
19-PTNLD28-TUMOR_peak_5744	chr1	116021909	116022149	+	23.47658	NA	Intergenic	Intergenic	-141172	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_87938	chr6	52282537	52282675	+	23.47460	NA	Intergenic	Intergenic	-2388	NM_018100	114327	Hs.403171	NM_018100	HPRD:10583	EFHC1	EJM1|dJ304B14.2	EF-hand domain (C-terminal) containing 1	protein-coding
19-PTNLD28-TUMOR_peak_41211	chr17	36412162	36412531	+	23.47460	NA	intron (NR_036750, intron 1 of 11)	intron (NR_036750, intron 1 of 11)	910	NR_036750	440434	Hs.443837	NR_036750	ENSG00000174093	LOC440434	-	aminopeptidase puromycin sensitive pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1085	chr1	16712927	16713149	+	23.46411	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	19513	NR_073500	26099	Hs.252967	NM_001114600	HPRD:13213	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74818	chr4	25729266	25729685	+	23.46411	NA	Intergenic	Intergenic	71389	NM_001177999	10568	Hs.479372	NM_006424	HPRD:07251	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb	solute carrier family 34 (type II sodium/phosphate contransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_105423	chr9	114384964	114385177	+	23.46384	NA	Intergenic	Intergenic	-8562	NR_037148	548645	Hs.534196	NM_001015882	HPRD:18685	DNAJC25	bA16L21.2.1	DnaJ (Hsp40) homolog, subfamily C , member 25	protein-coding
19-PTNLD28-TUMOR_peak_60286	chr20	25046368	25046628	+	23.46384	NA	Intergenic	Intergenic	-7680	NM_001252677	84532	Hs.529353	NM_032501	HPRD:12413	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
19-PTNLD28-TUMOR_peak_35528	chr15	101782990	101783154	+	23.46159	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	9065	NM_014918	22856	Hs.110488	NM_014918	HPRD:10493	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_23402	chr12	24379975	24380216	+	23.46159	NA	non-coding (NR_120473, exon 2 of 2)	non-coding (NR_120473, exon 2 of 2)	3890	NR_120473	101928471	Hs.569156	NR_120472		LOC101928471	-	uncharacterized LOC101928471	ncRNA
19-PTNLD28-TUMOR_peak_27833	chr13	36587789	36587944	+	23.46159	NA	intron (NM_004734, intron 3 of 17)	L1PA2|LINE|L1	-72484	NR_031646	100302239		NR_031646		MIR548F5	MIR548F-5|MIRN548F5|hsa-mir-548f-5	microRNA 548f-5	ncRNA
19-PTNLD28-TUMOR_peak_28607	chr13	80850640	80850914	+	23.45568	NA	Intergenic	Intergenic	64309	NM_005842	10253	Hs.18676	NM_005842	HPRD:03916	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_90698	chr6	171045564	171045686	+	23.45540	NA	Intergenic	Intergenic	-151845	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_43991	chr17	79603422	79603637	+	23.44362	NA	promoter-TSS (NM_001290212)	promoter-TSS (NM_001290212)	609	NM_017921	55666	Hs.464333	NM_017921	HPRD:06975	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_74987	chr4	38869176	38869462	+	23.42664	NA	promoter-TSS (NR_033290)	promoter-TSS (NR_033290)	-35	NR_033290	92689	Hs.476517	NM_138389	HPRD:11282	FAM114A1	Noxp20	family with sequence similarity 114, member A1	protein-coding
19-PTNLD28-TUMOR_peak_2177	chr1	33263904	33264078	+	23.42664	NA	intron (NM_003680, intron 4 of 12)	intron (NM_003680, intron 4 of 12)	-19052	NM_001256121	64766	Hs.440880	NM_022753	HPRD:07803	S100PBP	S100PBPR	S100P binding protein	protein-coding
19-PTNLD28-TUMOR_peak_101184	chr8	135033665	135033859	+	23.42382	NA	Intergenic	L1MB2|LINE|L1	135023	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_61656	chr20	47892228	47892440	+	23.41818	NA	exon (NM_021035, exon 2 of 14)	exon (NM_021035, exon 2 of 14)	-2381	NR_003606	441951	Hs.356766	NR_003604	ENSG00000177410	ZFAS1	C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1	ZNFX1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10710	chr1	229301194	229301412	+	23.41327	NA	Intergenic	Intergenic	-105506	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_4126	chr1	65726706	65726840	+	23.41287	NA	Intergenic	Intergenic	-3604	NM_001256865	9829	Hs.647643	NM_014787	HPRD:16326	DNAJC6	DJC6|PARK19	DnaJ (Hsp40) homolog, subfamily C, member 6	protein-coding
19-PTNLD28-TUMOR_peak_23478	chr12	26492253	26492443	+	23.41287	NA	exon (NM_002223, exon 57 of 57)	exon (NM_002223, exon 57 of 57)	143842	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_87884	chr6	48795029	48795294	+	23.41287	NA	Intergenic	MER54B|LTR|ERVL	635880	NM_000255	4594	Hs.485527	NM_000255	HPRD:02014	MUT	MCM	methylmalonyl CoA mutase	protein-coding
19-PTNLD28-TUMOR_peak_40174	chr17	9804118	9804361	+	23.41287	NA	intron (NM_002903, intron 2 of 2)	intron (NM_002903, intron 2 of 2)	4445	NM_002903	5957	Hs.80539	NM_002903		RCVRN	RCV1	recoverin	protein-coding
19-PTNLD28-TUMOR_peak_53773	chr2	85515633	85515814	+	23.39125	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	39696	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_107743	chrX	20283418	20283639	+	23.39117	NA	intron (NM_004586, intron 1 of 21)	intron (NM_004586, intron 1 of 21)	1222	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_75820	chr4	78016616	78016756	+	23.38915	NA	Intergenic	Intergenic	-19561	NM_006835	10983	Hs.518827	NM_006835	HPRD:16690	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
19-PTNLD28-TUMOR_peak_75672	chr4	74975706	74975876	+	23.37807	NA	Intergenic	Intergenic	-10794	NM_002089	2920	Hs.75765	NM_002089	HPRD:00741	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	chemokine (C-X-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_55818	chr2	133157782	133158041	+	23.37417	NA	Intergenic	Intergenic	-16236	NM_001508	2863	Hs.432395	NM_001508	HPRD:04198	GPR39	-	G protein-coupled receptor 39	protein-coding
19-PTNLD28-TUMOR_peak_16120	chr10	126150300	126150873	+	23.37417	NA	intron (NM_001167880, intron 1 of 5)	CpG	245	NM_001167880	64077	Hs.527748	NM_022126	HPRD:17274	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_10069	chr1	217804337	217804509	+	23.37417	NA	promoter-TSS (NM_138796)	promoter-TSS (NM_138796)	21	NM_018040	55105	Hs.362343	NM_018040	HPRD:07657	GPATCH2	CT110|GPATC2|PPP1R30	G patch domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_80220	chr5	62113154	62113345	+	23.37417	NA	Intergenic	L1PA2|LINE|L1	238687	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_100030	chr8	107784445	107784628	+	23.37417	NA	Intergenic	AluY|SINE|Alu	-2064	NM_139166	137735	Hs.374668	NM_139166	HPRD:11608	ABRA	STARS	actin-binding Rho activating protein	protein-coding
19-PTNLD28-TUMOR_peak_11475	chr1	246001177	246001323	+	23.37417	NA	intron (NM_022743, intron 10 of 11)	intron (NM_022743, intron 10 of 11)	579464	NM_022743	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_41472	chr17	39873704	39874243	+	23.35722	NA	Intergenic	L2a|LINE|L2	5395	NM_000805	2520	Hs.2681	NM_000805	HPRD:00671	GAST	GAS	gastrin	protein-coding
19-PTNLD28-TUMOR_peak_15072	chr10	98623878	98624094	+	23.35160	NA	intron (NM_001170765, intron 2 of 7)	intron (NM_001170765, intron 2 of 7)	31274	NM_032440	84458	Hs.745068	NM_032440	HPRD:07609	LCOR	MLR2	ligand dependent nuclear receptor corepressor	protein-coding
19-PTNLD28-TUMOR_peak_1361	chr1	22249127	22249353	+	23.34829	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	14550	NM_001291860	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_5001	chr1	94715947	94716212	+	23.34829	NA	Intergenic	Intergenic	-12772	NM_004815	9411	Hs.483238	NM_004815		ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
19-PTNLD28-TUMOR_peak_1526	chr1	24444374	24444550	+	23.34230	NA	Intergenic	Intergenic	-5797	NM_152372	127294	Hs.523413	NM_152372	HPRD:08200	MYOM3	-	myomesin 3	protein-coding
19-PTNLD28-TUMOR_peak_27434	chr13	22793026	22793213	+	23.34217	NA	intron (NR_103810, intron 1 of 1)	intron (NR_103810, intron 1 of 1)	8695	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_64586	chr22	22110158	22110397	+	23.34217	NA	Intergenic	Intergenic	-20206	NM_013313	29799	Hs.517436	NM_013313	HPRD:16277	YPEL1	-	yippee-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_71797	chr3	152769260	152769460	+	23.34217	NA	Intergenic	Intergenic	-110641	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_33207	chr15	41074915	41075106	+	23.34217	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	12851	NM_001130448	643338	Hs.631715	NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_97437	chr8	19675455	19675882	+	23.32936	NA	intron (NM_018142, intron 1 of 16)	intron (NM_018142, intron 1 of 16)	750	NM_018142	55174	Hs.512627	NM_018142	HPRD:07686	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
19-PTNLD28-TUMOR_peak_102604	chr9	30198604	30199106	+	23.32717	NA	Intergenic	HERVL18-int|LTR|ERVL	209597	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_53342	chr2	70351907	70352471	+	23.32222	NA	non-coding (NR_024444, exon 1 of 2)	non-coding (NR_024444, exon 1 of 2)	259	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LOC100133985	-	uncharacterized LOC100133985	ncRNA
19-PTNLD28-TUMOR_peak_49674	chr19	48763232	48763626	+	23.32222	NA	Intergenic	LTR13|LTR|ERVK	-4226	NM_001184902	22900	Hs.446146	NM_014959	HPRD:16425	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_99831	chr8	102974370	102974709	+	23.31425	NA	intron (NM_001040624, intron 3 of 7)	intron (NM_001040624, intron 3 of 7)	162023	NM_001040624	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_97307	chr8	16801871	16802022	+	23.31425	NA	Intergenic	L1PA2|LINE|L1	57728	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_54781	chr2	109596664	109596848	+	23.31425	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	9072	NM_022336	10913	Hs.171971	NM_022336	HPRD:04974	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
19-PTNLD28-TUMOR_peak_76640	chr4	113004444	113004671	+	23.31425	NA	Intergenic	Intergenic	-61996	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_9691	chr1	206113628	206113850	+	23.30473	NA	Intergenic	MamRep1161|DNA|TcMar	-24701	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_77662	chr4	153904995	153905443	+	23.30183	NA	Intergenic	Intergenic	41084	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76792	chr4	120023913	120024064	+	23.28842	NA	Intergenic	Intergenic	-32951	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_44385	chr18	5962374	5962822	+	23.28842	NA	intron (NM_173464, intron 18 of 19)	MER5B|DNA|hAT-Charlie	-70495	NM_001080209	645369	Hs.346566	NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
19-PTNLD28-TUMOR_peak_51008	chr2	9894413	9894608	+	23.28662	NA	Intergenic	MIRb|SINE|MIR	-89061	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_92079	chr7	38541943	38542167	+	23.28526	NA	intron (NM_001635, intron 3 of 20)	LTR32|LTR|ERVL	129112	NM_001635	273	Hs.592182	NM_001635	HPRD:02687	AMPH	AMPH1	amphiphysin	protein-coding
19-PTNLD28-TUMOR_peak_40997	chr17	31297365	31297626	+	23.28526	NA	Intergenic	LTR18B|LTR|ERVL	-21387	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_52659	chr2	47540297	47540488	+	23.28526	NA	intron (NR_110207, intron 1 of 2)	L2a|LINE|L2	31821	NR_110207	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA
19-PTNLD28-TUMOR_peak_59328	chr2	242714180	242714477	+	23.28298	NA	Intergenic	Intergenic	-1912	NM_022134	64090	Hs.632556	NM_022134	HPRD:16303	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_93551	chr7	76935536	76935858	+	23.28298	NA	Intergenic	L1PB1|LINE|L1	-106547	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_40642	chr17	21143740	21143953	+	23.26351	NA	3' UTR (NM_152914, exon 3 of 3)	3' UTR (NM_152914, exon 3 of 3)	12732	NM_152914	256302	Hs.654713	NM_152914	HPRD:17527	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_1139	chr1	17287273	17287643	+	23.26351	NA	exon (NM_014675, exon 27 of 37)	exon (NM_014675, exon 27 of 37)	19715	NM_001135248	4237	Hs.389137	NM_002403	HPRD:01137	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86941	chr6	34452792	34452979	+	23.26108	NA	intron (NM_020804, intron 1 of 9)	intron (NM_020804, intron 1 of 9)	19047	NM_020804	29993	Hs.520087	NM_020804	HPRD:05936	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
19-PTNLD28-TUMOR_peak_63589	chr21	40909539	40909828	+	23.26108	NA	Intergenic	MER34C_|LTR|ERV1	75066	NR_026543	114041	Hs.375120	NM_153754	HPRD:09847	C21orf88	-	chromosome 21 open reading frame 88	ncRNA
19-PTNLD28-TUMOR_peak_62926	chr21	21725570	21725990	+	23.26108	NA	Intergenic	Intergenic	449646	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	ncRNA
19-PTNLD28-TUMOR_peak_70803	chr3	130545525	130545761	+	23.24308	NA	Intergenic	Intergenic	-23726	NM_001199182	27032	Hs.584884	NM_014382	HPRD:05089	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase, Ca++ transporting, type 2C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_5135	chr1	99862705	99862873	+	23.24308	NA	Intergenic	MIR|SINE|MIR	132941	NM_014839	9890	Hs.13245	NM_014839	HPRD:07425	LPPR4	LPR4|PHP1|PRG-1|PRG1	lipid phosphate phosphatase-related protein type 4	protein-coding
19-PTNLD28-TUMOR_peak_79615	chr5	39648989	39649183	+	23.24308	NA	Intergenic	Intergenic	128553	NR_104632	101926940	Hs.436359	NR_104632	ENSG00000271334	LOC101926940	-	uncharacterized LOC101926940	ncRNA
19-PTNLD28-TUMOR_peak_14221	chr10	73382027	73382191	+	23.24308	NA	intron (NM_001171930, intron 11 of 30)	intron (NM_001171930, intron 11 of 30)	97469	NM_001164375	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_46706	chr19	3136829	3137009	+	23.24308	NA	intron (NM_002068, intron 1 of 6)	intron (NM_002068, intron 1 of 6)	889	NM_002068	2769	Hs.73797	NM_002068	HPRD:00760	GNA15	GNA16	guanine nucleotide binding protein (G protein), alpha 15 (Gq class)	protein-coding
19-PTNLD28-TUMOR_peak_71837	chr3	154448119	154448448	+	23.24308	NA	Intergenic	Intergenic	-300779	NM_001038705	344758	Hs.688231	NM_001038705	ENSG00000174948	GPR149	IEDA|PGR10	G protein-coupled receptor 149	protein-coding
19-PTNLD28-TUMOR_peak_102796	chr9	34591735	34591929	+	23.24002	NA	Intergenic	CpG-26448	-1694	NM_001207011	1271	Hs.129966	NM_001842	HPRD:00348	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_34390	chr15	72651177	72651558	+	23.24002	NA	intron (NM_000520, intron 1 of 13)	intron (NM_000520, intron 1 of 13)	-17087	NR_027262	80072	Hs.591113	NM_025005	ENSG00000260339	HEXA-AS1	C15orf34	HEXA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31066	chr14	70149370	70149581	+	23.22002	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	71165	NM_014734	9766	Hs.440025	NM_014734	HPRD:10010	KIAA0247	-	KIAA0247	protein-coding
19-PTNLD28-TUMOR_peak_72895	chr3	185701383	185701595	+	23.21677	NA	Intergenic	Intergenic	23731	NR_033752	344887	Hs.128803	NR_033752	ENSG00000171658	LOC344887	-	NmrA-like family domain containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88742	chr6	90605115	90605290	+	23.21677	NA	exon (NM_032602, exon 1 of 1)	exon (NM_032602, exon 1 of 1)	1014	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_101023	chr8	132200883	132201247	+	23.21677	NA	Intergenic	Intergenic	-148230	NM_001115	114	Hs.591859	NM_001115	HPRD:00051	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_37209	chr16	30170018	30170277	+	23.21677	NA	Intergenic	SVA_A|Other|Other	-24584	NM_001193333	11151	Hs.415067	NM_007074	HPRD:05414	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin, actin binding protein, 1A	protein-coding
19-PTNLD28-TUMOR_peak_83623	chr5	159797438	159797746	+	23.21677	NA	promoter-TSS (NM_031908)	promoter-TSS (NM_031908)	56	NM_031908	114898	Hs.110062	NM_031908	HPRD:12715	C1QTNF2	CTRP2|zacrp2	C1q and tumor necrosis factor related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_71499	chr3	145843841	145844024	+	23.21677	NA	intron (NM_000935, intron 1 of 18)	intron (NM_000935, intron 1 of 18)	35350	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_20666	chr11	94840479	94840881	+	23.20493	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	17706	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_12065	chr10	12810498	12810762	+	23.20042	NA	intron (NM_020397, intron 4 of 9)	intron (NM_020397, intron 4 of 9)	-64503	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	ncRNA
19-PTNLD28-TUMOR_peak_29506	chr14	23651943	23652093	+	23.19709	NA	exon (NM_012244, exon 1 of 11)	exon (NM_012244, exon 1 of 11)	851	NM_012244	23428	Hs.596643	NM_012244	HPRD:11971	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
19-PTNLD28-TUMOR_peak_100399	chr8	121275422	121275759	+	23.19709	NA	intron (NM_021110, intron 24 of 47)	intron (NM_021110, intron 24 of 47)	138243	NM_021110	7373	Hs.409662	NM_021110	HPRD:00379	COL14A1	UND	collagen, type XIV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_77043	chr4	129314396	129314623	+	23.19709	NA	Intergenic	Intergenic	-104525	NM_006320	10424	Hs.507910	NM_006320	HPRD:09665	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
19-PTNLD28-TUMOR_peak_5883	chr1	117900792	117900963	+	23.19709	NA	Intergenic	L1PA3|LINE|L1	-9208	NM_006699	10905	Hs.435938	NM_006699		MAN1A2	MAN1B	mannosidase, alpha, class 1A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_3620	chr1	54547425	54547562	+	23.19709	NA	intron (NM_153035, intron 3 of 4)	intron (NM_153035, intron 3 of 4)	27741	NR_039942	100616315		NR_039942	miRBase:MI0017426	MIR4781	-	microRNA 4781	ncRNA
19-PTNLD28-TUMOR_peak_65558	chr22	39601445	39601599	+	23.19709	NA	Intergenic	Intergenic	35392	NM_033016	5155	Hs.1976	NM_002608	HPRD:01815	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_43331	chr17	72653670	72653868	+	23.19709	NA	Intergenic	Intergenic	-13487	NM_175738	326624	Hs.351413	NM_175738	HPRD:06702	RAB37	-	RAB37, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_7662	chr1	161179715	161179915	+	23.19709	NA	intron (NM_001166159, intron 6 of 12)	intron (NM_001166159, intron 6 of 12)	-5272	NM_004106	2207	Hs.433300	NM_004106	HPRD:00916	FCER1G	FCRG	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_850	chr1	12600084	12600659	+	23.19709	NA	Intergenic	CpG	33071	NR_003022	677882	Hs.658450	NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
19-PTNLD28-TUMOR_peak_4036	chr1	64058972	64059956	+	23.18287	NA	promoter-TSS (NM_001172819)	promoter-TSS (NM_001172819)	-16	NM_001172819	5236	Hs.1869	NM_002633	HPRD:01389	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
19-PTNLD28-TUMOR_peak_9421	chr1	203309326	203309455	+	23.18072	NA	TTS (NM_002023)	TTS (NM_002023)	11167	NM_002023	2331	Hs.519168	NM_002023	HPRD:02591	FMOD	FM|SLRR2E	fibromodulin	protein-coding
19-PTNLD28-TUMOR_peak_40812	chr17	27169487	27169945	+	23.18072	NA	5' UTR (NM_001288631, exon 1 of 4)	5' UTR (NM_001288631, exon 1 of 4)	141	NM_001077498	55731	Hs.564533	NM_018182	HPRD:07693	FAM222B	C17orf63	family with sequence similarity 222, member B	protein-coding
19-PTNLD28-TUMOR_peak_99238	chr8	75232692	75232909	+	23.18072	NA	intron (NM_020647, intron 1 of 5)	CpG	762	NM_020647	56704	Hs.657367	NM_020647	HPRD:07286	JPH1	JP-1|JP1	junctophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_56759	chr2	165770581	165770874	+	23.18072	NA	intron (NM_001199148, intron 8 of 10)	MIRc|SINE|MIR	41308	NM_001199148	151258	Hs.658702	NM_173512	HPRD:08267	SLC38A11	AVT2	solute carrier family 38, member 11	protein-coding
19-PTNLD28-TUMOR_peak_67501	chr3	36529647	36530101	+	23.18072	NA	intron (NM_003149, intron 5 of 10)	intron (NM_003149, intron 5 of 10)	107895	NM_003149	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_634	chr1	9762385	9762541	+	23.18072	NA	intron (NM_005026, intron 2 of 23)	L3|LINE|CR1	-47819	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	ncRNA
19-PTNLD28-TUMOR_peak_21278	chr11	114006634	114006881	+	23.18072	NA	intron (NM_001018011, intron 2 of 6)	intron (NM_001018011, intron 2 of 6)	75469	NM_001018011	7704	Hs.591945	NM_006006	HPRD:11762	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_66572	chr3	10975460	10975832	+	23.18072	NA	intron (NM_014229, intron 11 of 13)	intron (NM_014229, intron 11 of 13)	-58774	NM_003042	6529	Hs.443874	NM_003042	HPRD:00664	SLC6A1	GABATHG|GABATR|GAT1	solute carrier family 6 (neurotransmitter transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_88293	chr6	73498024	73498207	+	23.17172	NA	intron (NM_001160133, intron 1 of 14)	MIRb|SINE|MIR	157892	NR_120503	100507381	Hs.662412	NR_120503		KCNQ5-IT1	-	KCNQ5 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_71280	chr3	140105315	140105501	+	23.16628	NA	intron (NM_022131, intron 2 of 16)	LTR18B|LTR|ERVL	122223	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92137	chr7	41105349	41105567	+	23.13569	NA	Intergenic	Intergenic	-35744	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA
19-PTNLD28-TUMOR_peak_13939	chr10	68587227	68587454	+	23.13569	NA	intron (NM_013266, intron 7 of 17)	MIRc|SINE|MIR	-98452	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_45415	chr18	42262741	42262901	+	23.13149	NA	intron (NM_015559, intron 1 of 5)	intron (NM_015559, intron 1 of 5)	1958	NM_015559	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_30419	chr14	55556289	55556692	+	23.12046	NA	Intergenic	Intergenic	38128	NM_144578	93487	Hs.594338	NM_144578	HPRD:12647	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_4105	chr1	65422011	65422213	+	23.12046	NA	intron (NM_002227, intron 1 of 24)	L2a|LINE|L2	10075	NM_002227	3716	Hs.207538	NM_002227	HPRD:00992	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_81176	chr5	93356960	93357283	+	23.12046	NA	intron (NR_028080, intron 3 of 8)	MER21-int|LTR|ERVL	90283	NM_001163417	83989	Hs.600086	NM_032042	HPRD:13210	FAM172A	C5orf21	family with sequence similarity 172, member A	protein-coding
19-PTNLD28-TUMOR_peak_89631	chr6	137958358	137958653	+	23.12046	NA	Intergenic	Intergenic	101669	NR_121618	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_55198	chr2	118283396	118283587	+	23.12046	NA	Intergenic	L1PA2|LINE|L1	-288764	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_32006	chr14	100029574	100029785	+	23.10975	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	41048	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
19-PTNLD28-TUMOR_peak_92553	chr7	51021607	51021830	+	23.10962	NA	Intergenic	Intergenic	-160559	NM_001001555	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_68364	chr3	52865645	52865817	+	23.10962	NA	Intergenic	Intergenic	-1014	NM_001166449	3700	Hs.709406	NM_002218	HPRD:02781	ITIH4	GP120|H4P|IHRP|ITI-HC4|ITIHL1|PK-120|PK120	inter-alpha-trypsin inhibitor heavy chain family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_89297	chr6	121803238	121803410	+	23.10962	NA	Intergenic	Intergenic	46601	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_88133	chr6	56728278	56728427	+	23.10962	NA	intron (NM_001144769, intron 3 of 96)	intron (NM_001144769, intron 3 of 96)	-11638	NM_001144770	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_78139	chr4	179118117	179118381	+	23.10962	NA	Intergenic	LTR16B1|LTR|ERVL	-289159	NR_108092	101928656	Hs.508131	NR_108092		LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
19-PTNLD28-TUMOR_peak_29680	chr14	28787186	28787695	+	23.10115	NA	Intergenic	L1PA2|LINE|L1	447085	NR_125758	103695363	Hs.569360	NR_125758		FOXG1-AS1	-	FOXG1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_45687	chr18	47250054	47250488	+	23.10115	NA	Intergenic	Intergenic	89980	NM_006111	10449	Hs.200136	NM_006111	HPRD:10380	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_81570	chr5	112256730	112257026	+	23.09723	NA	exon (NM_005669, exon 2 of 5)	exon (NM_005669, exon 2 of 5)	1153	NM_005669	7905	Hs.429608	NM_005669	HPRD:15918	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
19-PTNLD28-TUMOR_peak_88906	chr6	102116500	102116749	+	23.09323	NA	intron (NM_021956, intron 3 of 15)	intron (NM_021956, intron 3 of 15)	269763	NM_021956	2898	Hs.98262	NM_021956	HPRD:00692	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate receptor, ionotropic, kainate 2	protein-coding
19-PTNLD28-TUMOR_peak_63876	chr21	45121005	45121267	+	23.08470	NA	Intergenic	L2a|LINE|L2	-17842	NM_003681	8566	Hs.284491	NM_003681	HPRD:01526	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
19-PTNLD28-TUMOR_peak_30974	chr14	69229825	69230136	+	23.08470	NA	Intergenic	Intergenic	30651	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_87083	chr6	36328320	36328507	+	23.07483	NA	intron (NM_001207039, intron 6 of 6)	intron (NM_001207039, intron 6 of 6)	-23751	NM_001010903	389384	Hs.162104	NM_001010903	HPRD:16824	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
19-PTNLD28-TUMOR_peak_68547	chr3	57582277	57582466	+	23.07446	NA	intron (NM_001660, intron 1 of 5)	intron (NM_001660, intron 1 of 5)	844	NM_001660	378	Hs.652183	NM_001660	HPRD:03107	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
19-PTNLD28-TUMOR_peak_50697	chr1_gl000192_random	534691	534854	+	23.07272	NA	Intergenic	L2c|LINE|L2	-66089	NR_120328	102724558	Hs.712738	NR_120328		LOC102724558	-	uncharacterized LOC102724558	ncRNA
19-PTNLD28-TUMOR_peak_83108	chr5	148851342	148851543	+	23.04739	NA	Intergenic	Intergenic	41233	NR_029686	406937		NR_029686	miRBase:MI0000461	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
19-PTNLD28-TUMOR_peak_24412	chr12	53273287	53273944	+	23.03529	NA	Intergenic	Intergenic	25253	NM_002273	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_27510	chr13	25129311	25129505	+	23.02942	NA	Intergenic	LTR13|LTR|ERVK	-24938	NR_002815	374491	Hs.406779	NR_002815		TPTE2P6	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_13421	chr10	47989301	47989589	+	23.02942	NA	Intergenic	Intergenic	-166498	NR_033407	1517	Hs.568350	NR_033407		CTSLP2	CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4	cathepsin L pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_29448	chr14	23122324	23122512	+	23.02942	NA	Intergenic	Intergenic	55271	NM_022060	63874	Hs.445665	NM_022060	HPRD:12406	ABHD4	ABH4	abhydrolase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_45862	chr18	54112699	54112954	+	23.02942	NA	Intergenic	Intergenic	193094	NM_004786	9352	Hs.114412	NM_004786		TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_3956	chr1	62107472	62107651	+	23.02942	NA	Intergenic	Intergenic	-12353	NR_073400	414927	Hs.123471	NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_101444	chr8	142127521	142127794	+	23.02693	NA	Intergenic	Intergenic	-11063	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_100436	chr8	122519335	122519609	+	23.02479	NA	Intergenic	Intergenic	-132114	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56828	chr2	169046407	169046563	+	23.02479	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	57620	NM_013233	27347	Hs.276271	NM_013233	HPRD:09627	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
19-PTNLD28-TUMOR_peak_41860	chr17	44000839	44001058	+	23.02479	NA	intron (NM_001123066, intron 1 of 14).2	intron (NM_001123066, intron 1 of 14).2	27799	NR_024560	100130148	Hs.669307	NR_024560		MAPT-IT1	-	MAPT intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_298	chr1	3663856	3664110	+	23.02479	NA	promoter-TSS (NR_033708)	promoter-TSS (NR_033708)	-46	NR_033709	57212	Hs.49658	NM_207306	HPRD:13803	TP73-AS1	KIAA0495|PDAM	TP73 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28185	chr13	48583488	48583785	+	23.02479	NA	Intergenic	L2|LINE|L2	-8174	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_67671	chr3	40810102	40810350	+	23.02479	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	243857	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_8190	chr1	172025458	172025587	+	23.02479	NA	intron (NM_001136127, intron 10 of 19)	L1PA3|LINE|L1	-82426	NR_036066	100422882		NR_036066		MIR3120	-	microRNA 3120	ncRNA
19-PTNLD28-TUMOR_peak_75448	chr4	57886707	57886901	+	23.02479	NA	intron (NM_000938, intron 16 of 24)	intron (NM_000938, intron 16 of 24)	41695	NM_000938	5431	Hs.602757	NM_000938	HPRD:15943	POLR2B	POL2RB|RPB2|hRPB140|hsRPB2	polymerase (RNA) II (DNA directed) polypeptide B, 140kDa	protein-coding
19-PTNLD28-TUMOR_peak_58922	chr2	234475199	234475535	+	23.02479	NA	Intergenic	CpG	-1131	NM_018218	55230	Hs.96513	NM_018218	HPRD:07166	USP40	-	ubiquitin specific peptidase 40	protein-coding
19-PTNLD28-TUMOR_peak_78729	chr5	4419490	4419710	+	23.02287	NA	Intergenic	Intergenic	-353994	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_70720	chr3	129268373	129268544	+	23.02287	NA	intron (NM_153833, intron 3 of 4)	L2c|LINE|L2	6401	NM_153833	132243	Hs.97358	NM_153833	HPRD:13621	H1FOO	osH1	H1 histone family, member O, oocyte-specific	protein-coding
19-PTNLD28-TUMOR_peak_53281	chr2	69365707	69365872	+	23.02287	NA	intron (NM_053034, intron 12 of 14)	intron (NM_053034, intron 12 of 14)	34975	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
19-PTNLD28-TUMOR_peak_74455	chr4	9764776	9764972	+	23.02201	NA	Intergenic	Intergenic	-18384	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_40757	chr17	26220026	26220504	+	23.02201	NA	intron (NM_001076680, intron 1 of 3)	CpG	144	NM_001076680	201229	Hs.687951	NM_001076680	ENSG00000232859	LYRM9	C17orf108	LYR motif containing 9	protein-coding
19-PTNLD28-TUMOR_peak_96211	chr7	149103785	149103947	+	23.02201	NA	Intergenic	Intergenic	54187	NM_015694	27153	Hs.38512	NM_015694	HPRD:13849	ZNF777	-	zinc finger protein 777	protein-coding
19-PTNLD28-TUMOR_peak_65870	chr22	44946562	44946757	+	23.02071	NA	Intergenic	LTR33C|LTR|ERVL	-18561	NR_028411	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_16345	chr10	134373951	134374268	+	23.02071	NA	intron (NM_005539, intron 1 of 15)	AluJr|SINE|Alu	22756	NM_005539	3632	Hs.523360	NM_005539	HPRD:02521	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_35095	chr15	88918583	88918764	+	23.01788	NA	Intergenic	Intergenic	91960	NM_022163	26589	Hs.534261	NM_022163	HPRD:14765	MRPL46	C15orf4|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding
19-PTNLD28-TUMOR_peak_64484	chr22	21104882	21105119	+	23.01788	NA	intron (NM_058004, intron 27 of 54)	intron (NM_058004, intron 27 of 54)	-16045	NM_002650	5297	Hs.529438	NM_002650	HPRD:08972	PI4KA	PI4K-ALPHA|PIK4CA|pi4K230	phosphatidylinositol 4-kinase, catalytic, alpha	protein-coding
19-PTNLD28-TUMOR_peak_5425	chr1	110395042	110395222	+	23.01788	NA	Intergenic	LTR17|LTR|ERV1	-58101	NM_000757	1435	Hs.173894	NM_000757	HPRD:00388	CSF1	CSF-1|MCSF	colony stimulating factor 1 (macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_39536	chr16	90172721	90173051	+	23.00775	NA	Intergenic	CpG	-30548	NM_001098173	11105	Hs.406695	NM_052996	HPRD:17903	PRDM7	PFM4|ZNF910	PR domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_67912	chr3	46150786	46151045	+	23.00775	NA	Intergenic	Intergenic	-81936	NM_005283	2829	Hs.248116	NM_005283	HPRD:02774	XCR1	CCXCR1|GPR5	chemokine (C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_46336	chr18	74777516	74777738	+	22.99688	NA	intron (NM_001025101, intron 3 of 8)	intron (NM_001025101, intron 3 of 8)	-48572	NM_001025092	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_5404	chr1	110202741	110202914	+	22.98187	NA	intron (NM_147148, intron 7 of 7)	intron (NM_147148, intron 7 of 7)	4129	NM_000850	2948	Hs.348387	NM_000850	HPRD:00706	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
19-PTNLD28-TUMOR_peak_19005	chr11	62381929	62382068	+	22.95194	NA	TTS (NM_012200)	TTS (NM_012200)	-1761	NM_001300794	256364	Hs.379785	NM_153265	HPRD:08193	EML3	ELP95	echinoderm microtubule associated protein like 3	protein-coding
19-PTNLD28-TUMOR_peak_18541	chr11	49228274	49228426	+	22.95065	NA	exon (NM_001193472, exon 2 of 19)	exon (NM_001193472, exon 2 of 19)	1872	NM_001014986	2346	Hs.654487	NM_004476	HPRD:02961	FOLH1	FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP	folate hydrolase (prostate-specific membrane antigen) 1	protein-coding
19-PTNLD28-TUMOR_peak_86614	chr6	31459760	31459938	+	22.94893	NA	Intergenic	Intergenic	-2809	NM_001289160	4277	Hs.731446	NM_005931	HPRD:03894	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
19-PTNLD28-TUMOR_peak_20573	chr11	92733788	92733957	+	22.94827	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	31083	NM_005959	4544	Hs.569039	NM_005959	HPRD:02882	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
19-PTNLD28-TUMOR_peak_41543	chr17	40700128	40700458	+	22.94827	NA	Intergenic	CpG	-3691	NM_000413	3292	Hs.654385	NM_000413		HSD17B1	EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding
19-PTNLD28-TUMOR_peak_5494	chr1	111066821	111067122	+	22.94827	NA	Intergenic	Intergenic	-5174	NM_005549	3744	Hs.248140	NM_005549	HPRD:03882	KCNA10	Kcn1|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_108270	chrX	48916451	48916648	+	22.94827	NA	promoter-TSS (NM_001163321)	promoter-TSS (NM_001163321)	52	NM_001163322	90060	Hs.522643	NM_033626	HPRD:06595	CCDC120	-	coiled-coil domain containing 120	protein-coding
19-PTNLD28-TUMOR_peak_93147	chr7	72590952	72591132	+	22.94698	NA	intron (NR_002206, intron 3 of 23)	intron (NR_002206, intron 3 of 23)	22025	NR_002206	2970	Hs.654705	NR_002206		GTF2IP1	WBSCR7	general transcription factor IIi, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_55883	chr2	134744125	134744291	+	22.94348	NA	Intergenic	Intergenic	-140488	NR_037450	100500878		NR_037450	miRBase:MI0016080	MIR3679	-	microRNA 3679	ncRNA
19-PTNLD28-TUMOR_peak_1418	chr1	23031076	23031241	+	22.93717	NA	Intergenic	Intergenic	-6173	NM_004442	2048	Hs.523329	NM_004442	HPRD:02997	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
19-PTNLD28-TUMOR_peak_53844	chr2	86041449	86041567	+	22.93717	NA	promoter-TSS (NR_038888)	promoter-TSS (NR_038888)	-745	NR_038888	284950	Hs.570227	NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
19-PTNLD28-TUMOR_peak_74469	chr4	9949209	9949620	+	22.93708	NA	intron (NM_001001290, intron 6 of 12)	MER74B|LTR|ERVL	73700	NM_020041	56606	Hs.656895	NM_020041	HPRD:05848	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_72365	chr3	172035837	172036066	+	22.93058	NA	intron (NM_001135095, intron 11 of 25)	intron (NM_001135095, intron 11 of 25)	130295	NM_198407	2693	Hs.130212	NM_004122	HPRD:03541	GHSR	-	growth hormone secretagogue receptor	protein-coding
19-PTNLD28-TUMOR_peak_88323	chr6	74161841	74162157	+	22.92816	NA	promoter-TSS (NM_138441)	promoter-TSS (NM_138441)	44	NM_138441	115004	Hs.658405	NM_138441		MB21D1	C6orf150|cGAS|h-cGAS	Mab-21 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_85584	chr6	15312858	15313016	+	22.92502	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	63851	NM_001267040	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_95617	chr7	136426730	136427004	+	22.92502	NA	Intergenic	LTR16E1|LTR|ERVL	-126532	NM_001006627	1129	Hs.535891	NM_000739	HPRD:00328	CHRM2	HM2	cholinergic receptor, muscarinic 2	protein-coding
19-PTNLD28-TUMOR_peak_81604	chr5	112666392	112666816	+	22.92502	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	-35992	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_109083	chrX	106399404	106399543	+	22.92502	NA	intron (NM_017681, intron 4 of 8)	L1PA2|LINE|L1	-37416	NM_001171080	55285	Hs.139053	NM_018301		RBM41	-	RNA binding motif protein 41	protein-coding
19-PTNLD28-TUMOR_peak_93102	chr7	71377560	71377741	+	22.92502	NA	intron (NM_031468, intron 5 of 6)	intron (NM_031468, intron 5 of 6)	424558	NM_001017440	83698	Hs.592750	NM_031468	HPRD:06209	CALN1	CABP8	calneuron 1	protein-coding
19-PTNLD28-TUMOR_peak_89256	chr6	118277583	118277830	+	22.92502	NA	intron (NM_001029858, intron 1 of 7)	intron (NM_001029858, intron 1 of 7)	49017	NM_001029858	222553	Hs.654841	NM_001029858	HPRD:18751	SLC35F1	C6orf169|dJ230I3.1	solute carrier family 35, member F1	protein-coding
19-PTNLD28-TUMOR_peak_88036	chr6	53583775	53583921	+	22.92502	NA	Intergenic	Intergenic	-53342	NM_001003760	401265	Hs.131064	NM_001003760	HPRD:13923	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch-like family member 31	protein-coding
19-PTNLD28-TUMOR_peak_65376	chr22	37344326	37344574	+	22.92502	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-16839	NR_038954	100506241	Hs.640023	NR_038954	ENSG00000215403	LL22NC01-81G9.3	-	uncharacterized protein FLJ39582-like	ncRNA
19-PTNLD28-TUMOR_peak_7904	chr1	165463894	165464623	+	22.91225	NA	intron (NR_026744, intron 5 of 6)	L2b|LINE|L2	-49220	NM_001005214	440699	Hs.664975	NM_001005214	HPRD:13396	LRRC52	-	leucine rich repeat containing 52	protein-coding
19-PTNLD28-TUMOR_peak_39189	chr16	85470962	85471289	+	22.90994	NA	Intergenic	Intergenic	-131194	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_38533	chr16	70222613	70222799	+	22.90994	NA	Intergenic	Intergenic	14778	NM_173619	283971	Hs.556045	NM_173619	HPRD:14587	CLEC18C	MRCL|MRCL3	C-type lectin domain family 18, member C	protein-coding
19-PTNLD28-TUMOR_peak_90267	chr6	158461434	158461758	+	22.88939	NA	intron (NM_003898, intron 4 of 26)	intron (NM_003898, intron 4 of 26)	23516	NM_001178088	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_54860	chr2	110873355	110873566	+	22.88939	NA	5' UTR (NM_005434, exon 1 of 4)	5' UTR (NM_005434, exon 1 of 4)	683	NM_005434	7851	Hs.185055	NM_005434	HPRD:15997	MALL	BENE	mal, T-cell differentiation protein-like	protein-coding
19-PTNLD28-TUMOR_peak_84386	chr5	177573497	177573757	+	22.88909	NA	intron (NM_001288795, intron 8 of 10)	intron (NM_001288795, intron 8 of 10)	7334	NM_017838	55651	Hs.744074	NM_017838	HPRD:07570	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_6817	chr1	151792795	151792999	+	22.88481	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	5656	NM_001001523	6097	Hs.256022	NM_005060	HPRD:04250	RORC	NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR-related orphan receptor C	protein-coding
19-PTNLD28-TUMOR_peak_42550	chr17	56076950	56077157	+	22.88481	NA	Intergenic	Intergenic	7654	NR_034041	6426	Hs.68714	NM_006924		SRSF1	ASF|SF2|SF2p33|SFRS1|SRp30a	serine/arginine-rich splicing factor 1	protein-coding
19-PTNLD28-TUMOR_peak_59201	chr2	240609909	240610148	+	22.87689	NA	Intergenic	Intergenic	-74526	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_68310	chr3	52079675	52079863	+	22.87598	NA	Intergenic	Intergenic	10692	NM_001947	1849	Hs.591664	NM_001947	HPRD:04125	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
19-PTNLD28-TUMOR_peak_49972	chr19	51059899	51060084	+	22.86571	NA	intron (NM_001080457, intron 1 of 2)	L2a|LINE|L2	11311	NM_001080457	94030	Hs.120873	NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4	leucine rich repeat containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_10122	chr1	220037387	220037533	+	22.86571	NA	Intergenic	L1PA3|LINE|L1	-9159	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_38583	chr16	70964804	70964933	+	22.86571	NA	intron (NM_001270974, intron 45 of 85)	L1MEf|LINE|L1	-129807	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_92074	chr7	38385246	38385473	+	22.86571	NA	intron (NR_040085, intron 1 of 3)	intron (NR_040085, intron 1 of 3)	4181	NR_040085	100506776	Hs.173034	NR_040085		TRG-AS1	-	T cell receptor gamma locus antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3795	chr1	58844608	58844787	+	22.85197	NA	Intergenic	L1PA2|LINE|L1	-128486	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_39010	chr16	82031382	82031581	+	22.85197	NA	3' UTR (NM_145168, exon 3 of 3)	3' UTR (NM_145168, exon 3 of 3)	13612	NM_145168	93517	Hs.87779	NM_145168	HPRD:17118	SDR42E1	-	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
19-PTNLD28-TUMOR_peak_109681	chrX	146229093	146229359	+	22.83672	NA	Intergenic	L1PA3|LINE|L1	83135	NR_030233	574511		NR_030233	miRBase:MI0003193	MIR506	MIRN506|hsa-mir-506	microRNA 506	ncRNA
19-PTNLD28-TUMOR_peak_24879	chr12	60464388	60464601	+	22.83672	NA	Intergenic	Intergenic	381376	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_71133	chr3	137689943	137690290	+	22.83672	NA	Intergenic	Intergenic	-27542	NM_001002026	51208	Hs.655324	NM_016369	HPRD:13066	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding
19-PTNLD28-TUMOR_peak_69752	chr3	111634883	111635085	+	22.83248	NA	intron (NM_001134437, intron 4 of 17)	intron (NM_001134437, intron 4 of 17)	56416	NM_001134439	90102	Hs.603252	NM_145753	HPRD:06611	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_72888	chr3	185647591	185647835	+	22.83244	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	8211	NM_001243879	6434	Hs.533122	NM_004593		TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_91749	chr7	28076918	28077164	+	22.82801	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-143035	NR_034097	100128081	Hs.434307	NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96586	chr7	154678458	154678728	+	22.82759	NA	intron (NM_001290252, intron 20 of 23)	intron (NM_001290252, intron 20 of 23)	-41634	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1OS	PAXIP1-AS2	PAXIP1 opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_40861	chr17	27944199	27944369	+	22.82759	NA	intron (NM_032854, intron 5 of 9)	CpG-10388	4157	NM_032854	84940	Hs.143046	NM_032854	HPRD:08607	CORO6	-	coronin 6	protein-coding
19-PTNLD28-TUMOR_peak_75858	chr4	78977625	78978166	+	22.82516	NA	promoter-TSS (NM_025074)	promoter-TSS (NM_025074)	-829	NM_025074	80144	Hs.369448	NM_020875	HPRD:06382	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_23039	chr12	11121475	11121854	+	22.82120	NA	intron (NR_037918, intron 4 of 9)	LTR1D|LTR|ERV1	17847	NM_176890	259296	Hs.688194	NM_176890	HPRD:18158	TAS2R50	T2R50|T2R51|TAS2R51	taste receptor, type 2, member 50	protein-coding
19-PTNLD28-TUMOR_peak_93043	chr7	69197333	69197530	+	22.82120	NA	intron (NM_001127231, intron 1 of 17)	intron (NM_001127231, intron 1 of 17)	133526	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_99953	chr8	105430317	105430491	+	22.82120	NA	intron (NM_001385, intron 7 of 9)	intron (NM_001385, intron 7 of 9)	48873	NM_001385	1807	Hs.443161	NM_001385	HPRD:01960	DPYS	DHP|DHPase	dihydropyrimidinase	protein-coding
19-PTNLD28-TUMOR_peak_63280	chr21	35339583	35339923	+	22.82120	NA	intron (NR_038883, intron 2 of 2)	intron (NR_038883, intron 2 of 2)	18523	NM_001288961	400863	Hs.729814	NM_207472		LOC400863	-	uncharactered LOC400863	protein-coding
19-PTNLD28-TUMOR_peak_99253	chr8	76037676	76037894	+	22.82120	NA	Intergenic	Intergenic	125396	NM_001286778	83690	Hs.436542	NM_031461	HPRD:16756	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30056	chr14	43961828	43962012	+	22.82120	NA	Intergenic	L1PA2|LINE|L1	1014579	NM_032135	84075	Hs.307086	NM_032135	HPRD:12638	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19-PTNLD28-TUMOR_peak_7800	chr1	163277387	163277589	+	22.82120	NA	intron (NM_001254748, intron 1 of 5)	intron (NM_001254748, intron 1 of 5)	14093	NR_045630	8490	Hs.24950	NM_003617	HPRD:04471	RGS5	MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129	regulator of G-protein signaling 5	protein-coding
19-PTNLD28-TUMOR_peak_80874	chr5	78397137	78397278	+	22.82120	NA	Intergenic	L1PA3|LINE|L1	-10397	NM_001713	635	Hs.80756	NM_001713	HPRD:04200	BHMT	BHMT1|HEL-S-61p	betaine--homocysteine S-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_6126	chr1	143646155	143646267	+	22.81908	NA	Intergenic	Intergenic	-26710	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_62443	chr20	59745022	59745304	+	22.81908	NA	Intergenic	Intergenic	-82319	NM_001794	1002	Hs.473231	NM_001794	HPRD:04304	CDH4	CAD4|R-CAD|RCAD	cadherin 4, type 1, R-cadherin (retinal)	protein-coding
19-PTNLD28-TUMOR_peak_23955	chr12	46824246	46824468	+	22.80561	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	46467	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_66290	chr3	5165088	5165428	+	22.80283	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	1328	NM_018184	55207	Hs.250009	NM_018184	HPRD:12483	ARL8B	ARL10C|Gie1	ADP-ribosylation factor-like 8B	protein-coding
19-PTNLD28-TUMOR_peak_95439	chr7	132299539	132299709	+	22.78818	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	33823	NM_181775	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_33952	chr15	64279001	64279340	+	22.78818	NA	intron (NM_014326, intron 2 of 11)	intron (NM_014326, intron 2 of 11)	58697	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
19-PTNLD28-TUMOR_peak_50284	chr19	54735656	54735824	+	22.78818	NA	intron (NM_006864, intron 7 of 12)	ERV3-16A3_I-int|LTR|ERVL	10870	NM_024318	79168	Hs.688335	NM_024318		LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding
19-PTNLD28-TUMOR_peak_36062	chr16	5083608	5084015	+	22.78818	NA	non-coding (NR_038913, exon 1 of 2)	non-coding (NR_038913, exon 1 of 2)	108	NR_038913	100507589	Hs.729936	NR_038913		NAGPA-AS1	-	NAGPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27567	chr13	27825335	27825723	+	22.78818	NA	promoter-TSS (NM_000982)	promoter-TSS (NM_000982)	-163	NM_000982	6144	Hs.381123	NM_000982	HPRD:04700	RPL21	HYPT12|L21	ribosomal protein L21	protein-coding
19-PTNLD28-TUMOR_peak_94286	chr7	99869759	99870042	+	22.78275	NA	promoter-TSS (NM_178831)	promoter-TSS (NM_178831)	-45	NR_028039	352954	Hs.556063	NM_178831	HPRD:17030	GATS	STAG3OS	GATS, stromal antigen 3 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_52252	chr2	39187473	39187675	+	22.76754	NA	promoter-TSS (NR_028386)	promoter-TSS (NR_028386)	-89	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	ncRNA
19-PTNLD28-TUMOR_peak_47159	chr19	10025429	10025642	+	22.76725	NA	intron (NM_058164, intron 1 of 5)	CpG	21535	NM_058164	93145	Hs.169743	NM_058164	HPRD:10127	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
19-PTNLD28-TUMOR_peak_61265	chr20	43367573	43367756	+	22.75829	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-6824	NM_022358	60598	Hs.528664	NM_022358		KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium channel, subfamily K, member 15	protein-coding
19-PTNLD28-TUMOR_peak_67983	chr3	47435719	47436283	+	22.75351	NA	intron (NM_015466, intron 1 of 24)	intron (NM_015466, intron 1 of 24)	13510	NM_015466	25930	Hs.25524	NM_015466	HPRD:05959	PTPN23	HD-PTP|HDPTP|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding
19-PTNLD28-TUMOR_peak_74838	chr4	26034262	26034503	+	22.75351	NA	Intergenic	Intergenic	118568	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_22152	chr11	130050498	130050658	+	22.74840	NA	intron (NM_021978, intron 1 of 18)	intron (NM_021978, intron 1 of 18)	20896	NM_021978	6768	Hs.504315	NM_021978	HPRD:06005	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
19-PTNLD28-TUMOR_peak_5296	chr1	108534354	108534696	+	22.74401	NA	intron (NR_046653, intron 1 of 2)	intron (NR_046653, intron 1 of 2)	-26980	NM_006113	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_15326	chr10	103995453	103995597	+	22.74401	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	5706	NM_005029	5309	Hs.137568	NM_005029	HPRD:04051	PITX3	ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired-like homeodomain 3	protein-coding
19-PTNLD28-TUMOR_peak_5643	chr1	113826661	113826805	+	22.74401	NA	Intergenic	Intergenic	-77858	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_50658	chr1_gl000192_random	170112	170269	+	22.73471	NA	intron (NR_103556, intron 37 of 45)	L1MEf|LINE|L1	237320	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_15922	chr10	120839596	120839806	+	22.72765	NA	intron (NM_003750, intron 1 of 21)	CpG	633	NM_003750	8661	Hs.523299	NM_003750	HPRD:03618	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3, subunit A	protein-coding
19-PTNLD28-TUMOR_peak_61384	chr20	44642769	44643092	+	22.72765	NA	intron (NM_004994, intron 11 of 12)	CpG-16712	5383	NM_004994	4318	Hs.297413	NM_004994	HPRD:00387	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_82260	chr5	133972935	133973165	+	22.72765	NA	Intergenic	Intergenic	-4517	NM_016103	51128	Hs.432984	NM_016103	HPRD:09647	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated, Ras related GTPase 1B	protein-coding
19-PTNLD28-TUMOR_peak_50534	chr19	58399954	58400494	+	22.72627	NA	5' UTR (NM_001144989, exon 1 of 3)	5' UTR (NM_001144989, exon 1 of 3)	218	NM_001144989	730051	Hs.634143	NM_001144989		ZNF814	-	zinc finger protein 814	protein-coding
19-PTNLD28-TUMOR_peak_16697	chr11	2951896	2952237	+	22.72021	NA	Intergenic	Intergenic	-1416	NM_003311	7262	Hs.154036	NM_003311	HPRD:03679	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology-like domain, family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_31872	chr14	95781100	95781215	+	22.71864	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	5088	NM_024734	79789	Hs.301478	NM_024734	HPRD:13076	CLMN	-	calmin (calponin-like, transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_68770	chr3	64210977	64211232	+	22.71864	NA	promoter-TSS (NM_198859)	promoter-TSS (NM_198859)	27	NM_198859	166336	Hs.148105	NM_198859	HPRD:16342	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_31738	chr14	92936647	92936782	+	22.71864	NA	intron (NM_153647, intron 13 of 17)	intron (NM_153647, intron 13 of 17)	-43411	NM_024832	79890	Hs.326822	NM_024832	HPRD:11494	RIN3	-	Ras and Rab interactor 3	protein-coding
19-PTNLD28-TUMOR_peak_84900	chr6	3473410	3473550	+	22.71864	NA	Intergenic	Intergenic	-16687	NM_015482	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_93821	chr7	87872714	87873122	+	22.71864	NA	Intergenic	Intergenic	-16610	NM_198901	6717	Hs.489040	NM_003130	HPRD:01680	SRI	CP-22|CP22|SCN|V19	sorcin	protein-coding
19-PTNLD28-TUMOR_peak_90066	chr6	151796811	151797105	+	22.71864	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-18217	NM_025059	80129	Hs.660044	NM_025059	HPRD:10797	CCDC170	C6orf97|bA282P11.1	coiled-coil domain containing 170	protein-coding
19-PTNLD28-TUMOR_peak_55926	chr2	135922065	135922327	+	22.71864	NA	exon (NM_012233, exon 23 of 24)	exon (NM_012233, exon 23 of 24)	112361	NM_001172435	22930	Hs.306327	NM_012233	HPRD:16002	RAB3GAP1	P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein subunit 1 (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_74839	chr4	26050277	26050485	+	22.71864	NA	Intergenic	Intergenic	134567	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_95706	chr7	138423551	138423746	+	22.71864	NA	intron (NM_130840, intron 14 of 20)	intron (NM_130840, intron 14 of 20)	35134	NM_130841	50617	Hs.98967	NM_020632	HPRD:05576	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase, H+ transporting, lysosomal V0 subunit a4	protein-coding
19-PTNLD28-TUMOR_peak_72463	chr3	176685418	176685598	+	22.71864	NA	Intergenic	LTR32|LTR|ERVL	-150719	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
19-PTNLD28-TUMOR_peak_33930	chr15	63674070	63674419	+	22.71864	NA	promoter-TSS (NM_001218)	promoter-TSS (NM_001218)	65	NM_001218	771	Hs.210995	NM_001218		CA12	CAXII|HsT18816	carbonic anhydrase XII	protein-coding
19-PTNLD28-TUMOR_peak_74853	chr4	26228548	26228831	+	22.71171	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	-92643	NM_203283	3516	Hs.479396	NM_005349	HPRD:00920	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
19-PTNLD28-TUMOR_peak_40823	chr17	27310760	27310949	+	22.71171	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	22227	NM_001098635	124925	Hs.21837	NM_178860	HPRD:18041	SEZ6	-	seizure related 6 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_36804	chr16	22598143	22598318	+	22.70681	NA	Intergenic	Intergenic	41211	NR_003676	653786	Hs.564945	NR_003676	ENSG00000257838	LOC653786	-	otoancorin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_83206	chr5	149894376	149894740	+	22.69895	NA	intron (NM_001543, intron 1 of 14)	intron (NM_001543, intron 1 of 14)	6884	NM_001543	3340	Hs.222055	NM_001543	HPRD:02912	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
19-PTNLD28-TUMOR_peak_86616	chr6	31463494	31463682	+	22.69791	NA	intron (NM_001289160, intron 1 of 5)	AluJr|SINE|Alu	930	NM_001289160	4277	Hs.731446	NM_005931	HPRD:03894	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
19-PTNLD28-TUMOR_peak_59266	chr2	241630223	241630432	+	22.68834	NA	promoter-TSS (NM_198998)	promoter-TSS (NM_198998)	-935	NM_198998	375318	Hs.534650	NM_198998	HPRD:16504	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
19-PTNLD28-TUMOR_peak_95205	chr7	129164431	129164666	+	22.68834	NA	Intergenic	AluJb|SINE|Alu	22228	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_87660	chr6	44064547	44064753	+	22.68834	NA	Intergenic	Intergenic	30541	NM_032111	64928	Hs.311190	NM_032111	HPRD:14741	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
19-PTNLD28-TUMOR_peak_82261	chr5	133983817	133984000	+	22.67839	NA	promoter-TSS (NM_001252231)	promoter-TSS (NM_001252231)	-567	NM_001252231	10802	Hs.595540	NM_021982	ENSG00000113615	SEC24A	-	SEC24 family member A	protein-coding
19-PTNLD28-TUMOR_peak_13680	chr10	54790023	54790241	+	22.67701	NA	Intergenic	LTR30|LTR|ERV1	-258672	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_105542	chr9	116412888	116413327	+	22.67367	NA	Intergenic	Intergenic	56673	NM_001276262	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_12068	chr10	12849401	12849658	+	22.65716	NA	intron (NM_020397, intron 6 of 9)	intron (NM_020397, intron 6 of 9)	-25604	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	ncRNA
19-PTNLD28-TUMOR_peak_108694	chrX	71238412	71238737	+	22.65232	NA	intron (NM_001013627, intron 1 of 7)	CpG	-25685	NR_002309	441502	Hs.449523	NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
19-PTNLD28-TUMOR_peak_18731	chr11	58783177	58783315	+	22.65232	NA	intron (NR_033853, intron 3 of 5)	L1PA3|LINE|L1	42679	NR_033853	283194		NR_033853	ENSG00000255240	LOC283194	-	uncharacterized LOC283194	ncRNA
19-PTNLD28-TUMOR_peak_72293	chr3	170601811	170601958	+	22.65232	NA	Intergenic	L1PA2|LINE|L1	-13839	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_75976	chr4	82646122	82646504	+	22.65232	NA	Intergenic	Intergenic	-253231	NM_001300736	153020	Hs.591696	NM_152545	HPRD:17955	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_9246	chr1	201583402	201583564	+	22.65232	NA	Intergenic	Intergenic	-33967	NM_020443	89796	Hs.585374	NM_020443	HPRD:10113	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
19-PTNLD28-TUMOR_peak_6426	chr1	146799249	146799510	+	22.64644	NA	Intergenic	L1PA3|LINE|L1	85088	NM_001256337	9557	Hs.191164	NM_004284	HPRD:09880	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_1604	chr1	25691153	25691398	+	22.63527	NA	intron (NM_138616, intron 6 of 6)	intron (NM_138616, intron 6 of 6)	26486	NM_014313	23585	Hs.705699	NM_014313	HPRD:05636	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
19-PTNLD28-TUMOR_peak_94502	chr7	102045125	102045313	+	22.63527	NA	intron (NM_024653, intron 4 of 5)	intron (NM_024653, intron 4 of 5)	8415	NM_024653	79706	Hs.722104	NM_024653	HPRD:11460	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1 (IL11 inducible)	protein-coding
19-PTNLD28-TUMOR_peak_77610	chr4	152727688	152728048	+	22.63527	NA	Intergenic	Intergenic	-45693	NM_004564	5188	Hs.119316	NM_004564	HPRD:04706	GATB	PET112|PET112L	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_105616	chr9	117444465	117444619	+	22.63527	NA	promoter-TSS (NM_001199233)	promoter-TSS (NM_001199233)	-173	NM_001199233	100505478	Hs.200101	NM_001199233		LOC100505478	-	uncharacterized LOC100505478	protein-coding
19-PTNLD28-TUMOR_peak_5148	chr1	100065258	100065546	+	22.63527	NA	Intergenic	Intergenic	-46029	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_42566	chr17	56267252	56267481	+	22.63527	NA	Intergenic	Intergenic	-2723	NM_000502	8288	Hs.279259	NM_000502	HPRD:00576	EPX	EPO|EPP|EPX-PEN	eosinophil peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_5288	chr1	108231090	108231324	+	22.63527	NA	promoter-TSS (NM_001079874)	promoter-TSS (NM_001079874)	-81	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_86598	chr6	31336282	31336516	+	22.62880	NA	Intergenic	L1ME3A|LINE|L1	-11410	NM_005514	3106	Hs.77961	NM_005514	HPRD:00828	HLA-B	AS|HLAB|SPDA1	major histocompatibility complex, class I, B	protein-coding
19-PTNLD28-TUMOR_peak_6868	chr1	152201408	152201598	+	22.62584	NA	Intergenic	L2|LINE|L2	-4831	NM_001009931	388697	Hs.490162	NM_001009931	HPRD:17114	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
19-PTNLD28-TUMOR_peak_21858	chr11	124628279	124628528	+	22.62584	NA	promoter-TSS (NR_120577)	promoter-TSS (NR_120577)	-627	NR_120577	101929340	Hs.173840	NR_120577		LOC101929340	-	uncharacterized LOC101929340	ncRNA
19-PTNLD28-TUMOR_peak_10797	chr1	230871302	230871507	+	22.62366	NA	Intergenic	Intergenic	-11726	NM_006615	10753	Hs.498021	NM_006615	HPRD:05909	CAPN9	GC36|nCL-4	calpain 9	protein-coding
19-PTNLD28-TUMOR_peak_37210	chr16	30194633	30194982	+	22.62366	NA	promoter-TSS (NM_001193333)	promoter-TSS (NM_001193333)	76	NM_007074	11151	Hs.415067	NM_007074	HPRD:05414	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin, actin binding protein, 1A	protein-coding
19-PTNLD28-TUMOR_peak_93921	chr7	91875164	91875941	+	22.62121	NA	promoter-TSS (NM_194455)	promoter-TSS (NM_194455)	4	NM_019004	54467	Hs.83293	NM_019004	ENSG00000001629	ANKIB1	-	ankyrin repeat and IBR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89014	chr6	108930461	108930726	+	22.61710	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	48524	NM_001455	2309	Hs.220950	NM_001455	HPRD:04061	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
19-PTNLD28-TUMOR_peak_4523	chr1	83004606	83004915	+	22.61710	NA	Intergenic	Intergenic	445845	NR_110632	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_52794	chr2	54271204	54271466	+	22.61710	NA	Intergenic	Intergenic	-71075	NM_138448	98	Hs.516173	NM_138448	HPRD:00028	ACYP2	ACYM|ACYP	acylphosphatase 2, muscle type	protein-coding
19-PTNLD28-TUMOR_peak_54539	chr2	101822133	101822265	+	22.60081	NA	Intergenic	Intergenic	-47146	NM_017546	55571	Hs.744080	NM_017546	HPRD:12812	CNOT11	C2orf29	CCR4-NOT transcription complex, subunit 11	protein-coding
19-PTNLD28-TUMOR_peak_10751	chr1	229797134	229797324	+	22.60081	NA	Intergenic	Intergenic	35248	NM_014777	9816	Hs.533628	NM_014777	HPRD:17178	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_68817	chr3	65582997	65583406	+	22.60081	NA	intron (NM_001033057, intron 2 of 22)	intron (NM_001033057, intron 2 of 22)	-296290	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90630	chr6	169614912	169615222	+	22.59476	NA	TTS (NM_003247)	TTS (NM_003247)	39142	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_2238	chr1	33925866	33926079	+	22.58634	NA	Intergenic	Intergenic	-12260	NM_145238	7579	Hs.442705	NM_145238	HPRD:15769	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_15447	chr10	105587978	105588154	+	22.58634	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	27098	NM_014631	9644	Hs.678727	NM_014631	HPRD:10228	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
19-PTNLD28-TUMOR_peak_101328	chr8	139685238	139685442	+	22.58634	NA	intron (NM_152888, intron 41 of 64)	intron (NM_152888, intron 41 of 64)	-176275	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_104209	chr9	86796718	86797385	+	22.58634	NA	Intergenic	Intergenic	118693	NR_110995	101927575	Hs.459826	NR_110995	ENSG00000227463	LOC101927575	-	uncharacterized LOC101927575	ncRNA
19-PTNLD28-TUMOR_peak_46808	chr19	4696718	4697092	+	22.58634	NA	intron (NM_139159, intron 11 of 21)	intron (NM_139159, intron 11 of 21)	17611	NM_001242901	100131094	Hs.678135	NM_001242901		DPP9-AS1	-	DPP9 antisense RNA 1	protein-coding
19-PTNLD28-TUMOR_peak_63194	chr21	33893301	33893615	+	22.58591	NA	Intergenic	Intergenic	64387	NM_144659	140290	Hs.728804	NM_018277		TCP10L	C21orf77|TCP10A-2	t-complex 10-like	protein-coding
19-PTNLD28-TUMOR_peak_84610	chr5	180673858	180674157	+	22.57962	NA	intron (NR_109909, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	466	NR_109909	101928649	Hs.723307	NR_109909		CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
19-PTNLD28-TUMOR_peak_75638	chr4	73184582	73184770	+	22.56098	NA	intron (NM_014243, intron 9 of 21)	intron (NM_014243, intron 9 of 21)	249840	NM_014243	9508	Hs.590919	NM_014243	HPRD:06893	ADAMTS3	ADAMTS-4	ADAM metallopeptidase with thrombospondin type 1 motif, 3	protein-coding
19-PTNLD28-TUMOR_peak_11901	chr10	6949910	6950369	+	22.56098	NA	Intergenic	Intergenic	128579	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
19-PTNLD28-TUMOR_peak_97652	chr8	22949951	22950232	+	22.56098	NA	intron (NR_046173, intron 2 of 3)	intron (NR_046173, intron 2 of 3)	8223	NR_046173	254896	Hs.735240	NR_046173		LOC254896	-	uncharacterized LOC254896	ncRNA
19-PTNLD28-TUMOR_peak_11098	chr1	235781208	235781491	+	22.56098	NA	intron (NM_001098721, intron 1 of 3)	intron (NM_001098721, intron 1 of 3)	31944	NM_001098722	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_73878	chr4	1941813	1942140	+	22.55974	NA	3' UTR (NM_007331, exon 11 of 11)	3' UTR (NM_007331, exon 11 of 11)	-34387	NR_003004	677770	Hs.676951	NR_003004		SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
19-PTNLD28-TUMOR_peak_35828	chr16	2643578	2643929	+	22.55974	NA	intron (NM_001261816, intron 11 of 11)	intron (NM_001261816, intron 11 of 11)	-9632	NR_015441	652276	Hs.720448	NR_015441	ENSG00000215154	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_9671	chr1	205760817	205760964	+	22.55974	NA	intron (NM_173854, intron 10 of 10)	intron (NM_173854, intron 10 of 10)	-16280	NM_001135664	8934	Hs.115325	NM_003929	HPRD:11962	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_1599	chr1	25653039	25653280	+	22.55974	NA	intron (NM_001282867, intron 9 of 9)	intron (NM_001282867, intron 9 of 9)	-11630	NM_014313	23585	Hs.705699	NM_014313	HPRD:05636	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
19-PTNLD28-TUMOR_peak_1407	chr1	22747064	22747202	+	22.55948	NA	Intergenic	Intergenic	-31211	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_39433	chr16	89268397	89268667	+	22.55137	NA	Intergenic	CpG	-2003	NM_001242757	146429	Hs.447544	NM_001242757		SLC22A31	-	solute carrier family 22, member 31	protein-coding
19-PTNLD28-TUMOR_peak_53081	chr2	64832149	64832321	+	22.55137	NA	Intergenic	Intergenic	-2211	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	ncRNA
19-PTNLD28-TUMOR_peak_47355	chr19	11769857	11770117	+	22.52685	NA	Intergenic	LTR43|LTR|ERV1	-14826	NR_028594	401898	Hs.672384	NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86396	chr6	29705844	29706119	+	22.52546	NA	non-coding (NR_026972, exon 4 of 6).6	non-coding (NR_026972, exon 4 of 6).6	10845	NR_026972	285830	Hs.646985	NM_001003807	HPRD:16938	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54520	chr2	101519405	101519623	+	22.52546	NA	intron (NM_002518, intron 1 of 20)	intron (NM_002518, intron 1 of 20)	74109	NR_110213	101927142	Hs.656556	NR_110213		LOC101927142	-	uncharacterized LOC101927142	ncRNA
19-PTNLD28-TUMOR_peak_86316	chr6	28367506	28367791	+	22.52546	NA	promoter-TSS (NM_001163391)	promoter-TSS (NM_001163391)	-104	NM_001163391	9753	Hs.134816	NM_014724		ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_53794	chr2	85671861	85671985	+	22.51843	NA	Intergenic	Intergenic	10005	NM_198482	284948	Hs.209542	NM_198482	HPRD:14156	SH2D6	-	SH2 domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_59934	chr20	16264113	16264342	+	22.51843	NA	intron (NM_024704, intron 25 of 25)	intron (NM_024704, intron 25 of 25)	289852	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_91854	chr7	30681825	30682022	+	22.51843	NA	Intergenic	L1PA2|LINE|L1	40218	NM_001202482	1395	Hs.546246	NM_001883		CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_94907	chr7	116166245	116166415	+	22.51843	NA	promoter-TSS (NM_001172897)	promoter-TSS (NM_001172897)	-17	NM_001172896	857	Hs.74034	NM_001753	HPRD:03028	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1, caveolae protein, 22kDa	protein-coding
19-PTNLD28-TUMOR_peak_57186	chr2	178450022	178450478	+	22.51843	NA	Intergenic	Intergenic	-32726	NM_152517	150737	Hs.447659	NM_152517		TTC30B	IFT70|fleer	tetratricopeptide repeat domain 30B	protein-coding
19-PTNLD28-TUMOR_peak_32458	chr15	20499096	20499249	+	22.51695	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	11175	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_90937	chr7	2664736	2664966	+	22.51695	NA	Intergenic	L1PA17|LINE|L1	-6752	NM_025250	80727	Hs.440899	NM_025250	HPRD:12333	TTYH3	-	tweety family member 3	protein-coding
19-PTNLD28-TUMOR_peak_68426	chr3	54030626	54030849	+	22.51678	NA	Intergenic	LTR88a|LTR|Gypsy?	-104748	NM_021237	58515	Hs.58471	NM_021237	HPRD:07448	SELK	HSPC297|SelK	selenoprotein K	protein-coding
19-PTNLD28-TUMOR_peak_65902	chr22	45468269	45468445	+	22.51678	NA	Intergenic	L2c|LINE|L2	-62548	NM_001135862	112885	Hs.254097	NM_138415	HPRD:13997	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
19-PTNLD28-TUMOR_peak_60631	chr20	32843503	32843632	+	22.51678	NA	Intergenic	LTR13|LTR|ERVK	-4604	NM_001672	434	Hs.659995	NM_001672	HPRD:02562	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
19-PTNLD28-TUMOR_peak_107401	chrX	3204339	3204574	+	22.51678	NA	Intergenic	Intergenic	14595	NR_038428	100129464	Hs.187816	NR_038428	ENSG00000228459	CXorf28	-	chromosome X open reading frame 28	ncRNA
19-PTNLD28-TUMOR_peak_34548	chr15	75448753	75449447	+	22.49533	NA	Intergenic	Intergenic	-45121	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_91295	chr7	12202094	12202295	+	22.49533	NA	Intergenic	Intergenic	-48654	NM_001134232	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_22164	chr11	130249253	130249428	+	22.49533	NA	Intergenic	LTR32|LTR|ERVL	49199	NM_007037	11095	Hs.271605	NM_007037	HPRD:05531	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif, 8	protein-coding
19-PTNLD28-TUMOR_peak_47770	chr19	15984691	15984895	+	22.49533	NA	Intergenic	LTR10F|LTR|ERV1	24137	NM_001082	8529	Hs.558423	NM_001082	HPRD:05112	CYP4F2	CPF2	cytochrome P450, family 4, subfamily F, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_103104	chr9	39412727	39413049	+	22.49195	NA	Intergenic	Intergenic	41826	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_99472	chr8	91013107	91013681	+	22.48460	NA	promoter-TSS (NM_001359)	promoter-TSS (NM_001359)	-186	NM_001359	1666	Hs.492212	NM_001359	HPRD:01959	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_104347	chr9	89987511	89987724	+	22.48346	NA	Intergenic	Intergenic	-124526	NM_001288731	1612	Hs.380277	NM_004938	HPRD:02902	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_65640	chr22	41040731	41040921	+	22.47097	NA	Intergenic	Intergenic	-8103	NM_001282661	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_44908	chr18	21096006	21096149	+	22.47097	NA	intron (NR_075075, intron 3 of 16)	intron (NR_075075, intron 3 of 16)	12643	NM_001276342	29919	Hs.464779	NM_013326	HPRD:12693	C18orf8	HsT2591|MIC1|Mic-1	chromosome 18 open reading frame 8	protein-coding
19-PTNLD28-TUMOR_peak_24222	chr12	51379088	51379286	+	22.47097	NA	TTS (NM_001174129)	TTS (NM_001174129)	23866	NM_001174130	4891	Hs.505545	NM_000617	HPRD:02750	SLC11A2	DCT1|DMT1|NRAMP2	solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_929	chr1	14440475	14440641	+	22.47097	NA	Intergenic	Intergenic	364682	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_24169	chr12	50353633	50353859	+	22.46522	NA	intron (NR_110589, intron 1 of 1)	intron (NR_110589, intron 1 of 1)	-1533	NM_001651	362	Hs.298023	NM_001651		AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
19-PTNLD28-TUMOR_peak_24401	chr12	53231337	53231498	+	22.45654	NA	TTS (NM_173352)	TTS (NM_173352)	-3340	NM_175834	338785	Hs.711471	NM_175834	HPRD:11183	KRT79	K6L|KRT6L	keratin 79	protein-coding
19-PTNLD28-TUMOR_peak_46847	chr19	5298475	5298811	+	22.45654	NA	intron (NM_130854, intron 1 of 32)	intron (NM_130854, intron 1 of 32)	42171	NM_002850	5802	Hs.744928	NM_002850	HPRD:03344	PTPRS	PTPSIGMA	protein tyrosine phosphatase, receptor type, S	protein-coding
19-PTNLD28-TUMOR_peak_93131	chr7	72424793	72425048	+	22.43798	NA	non-coding (NR_033323, exon 2 of 11)	non-coding (NR_033323, exon 2 of 11)	382	NR_033323	260294	Hs.510927	NM_148936	HPRD:15657	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NOP2/Sun domain family, member 5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_62902	chr21	19221524	19221721	+	22.43682	NA	intron (NR_024354, intron 1 of 2)	intron (NR_024354, intron 1 of 2)	-29919	NM_001100421	54149	Hs.293811	NM_017447	HPRD:10776	C21orf91	C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_55464	chr2	122787662	122787982	+	22.43362	NA	Intergenic	MIRb|SINE|MIR	274701	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_77248	chr4	141051869	141052104	+	22.41712	NA	intron (NM_018717, intron 1 of 5)	L2c|LINE|L2	23247	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_98221	chr8	37790538	37790693	+	22.41712	NA	Intergenic	MER21C|LTR|ERVL	7032	NM_152413	137362	Hs.380740	NM_152413	HPRD:14558	GOT1L1	-	glutamic-oxaloacetic transaminase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_104555	chr9	94065144	94065464	+	22.41712	NA	intron (NM_001698, intron 4 of 9)	intron (NM_001698, intron 4 of 9)	58902	NM_001698	549	Hs.175905	NM_001698	HPRD:08987	AUH	-	AU RNA binding protein/enoyl-CoA hydratase	protein-coding
19-PTNLD28-TUMOR_peak_110029	chrX	154209222	154209496	+	22.41712	NA	intron (NM_000132, intron 6 of 25)	intron (NM_000132, intron 6 of 25)	41639	NM_000132	2157	Hs.632836	NM_000132	HPRD:02384	F8	AHF|DXS1253E|F8B|F8C|FVIII|HEMA	coagulation factor VIII, procoagulant component	protein-coding
19-PTNLD28-TUMOR_peak_15017	chr10	97205068	97205251	+	22.41712	NA	intron (NM_001290294, intron 2 of 31)	intron (NM_001290294, intron 2 of 31)	-4222	NM_001290296	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27999	chr13	42355128	42355567	+	22.41712	NA	intron (NM_001009814, intron 19 of 25)	L2a|LINE|L2	179874	NM_001009814	23078	Hs.368282	NM_015058	HPRD:17194	VWA8	KIAA0564	von Willebrand factor A domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_24450	chr12	53517708	53517879	+	22.41712	NA	intron (NM_003578, intron 14 of 14)	intron (NM_003578, intron 14 of 14)	20519	NM_003578	8435	Hs.656544	NM_003578	HPRD:03202	SOAT2	ACACT2|ACAT2|ARGP2	sterol O-acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_69109	chr3	74894360	74894520	+	22.41712	NA	Intergenic	L1MB5|LINE|L1	-324097	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
19-PTNLD28-TUMOR_peak_55386	chr2	121453299	121453521	+	22.41352	NA	Intergenic	Intergenic	-101457	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_19966	chr11	73600126	73600426	+	22.41010	NA	intron (NM_001267805, intron 4 of 12)	intron (NM_001267805, intron 4 of 12)	12262	NM_001267803	80227	Hs.525017	NM_025155	HPRD:07761	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase-associated factor 1	protein-coding
19-PTNLD28-TUMOR_peak_100290	chr8	119358059	119358262	+	22.40873	NA	intron (NR_109794, intron 4 of 4)	intron (NR_109794, intron 4 of 4)	-234102	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_62562	chr20	61818024	61818190	+	22.38808	NA	Intergenic	Intergenic	8255	NR_029670	406909		NR_029670	miRBase:MI0000445	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	ncRNA
19-PTNLD28-TUMOR_peak_88262	chr6	72178796	72179178	+	22.38808	NA	Intergenic	Intergenic	48257	NR_121615	102724000	Hs.145785	NR_121615		LOC102724000	-	uncharacterized LOC102724000	ncRNA
19-PTNLD28-TUMOR_peak_108623	chrX	68219289	68219531	+	22.38530	NA	Intergenic	Intergenic	165955	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_108246	chrX	48660736	48661002	+	22.38191	NA	intron (NM_006044, intron 1 of 28)	intron (NM_006044, intron 1 of 28)	382	NM_006044	10013	Hs.6764	NM_006044	HPRD:02228	HDAC6	CPBHM|HD6|PPP1R90	histone deacetylase 6	protein-coding
19-PTNLD28-TUMOR_peak_29065	chr13	111064537	111064824	+	22.38188	NA	intron (NM_001846, intron 4 of 47)	intron (NM_001846, intron 4 of 47)	71375	NR_107040	102465872		NR_107040		MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
19-PTNLD28-TUMOR_peak_44652	chr18	12336347	12336579	+	22.38188	NA	intron (NM_006796, intron 16 of 16)	LTR8A|LTR|ERV1	28206	NM_032525	84617	Hs.193491	NM_032525	HPRD:11349	TUBB6	HsT1601|TUBB-5	tubulin, beta 6 class V	protein-coding
19-PTNLD28-TUMOR_peak_82376	chr5	136146179	136146389	+	22.38188	NA	Intergenic	Intergenic	-445120	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_83045	chr5	147391382	147391533	+	22.36860	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-52078	NM_006846	11005	Hs.331555	NM_006846	HPRD:05423	SPINK5	LEKTI|LETKI|NETS|NS|VAKTI	serine peptidase inhibitor, Kazal type 5	protein-coding
19-PTNLD28-TUMOR_peak_44262	chr18	2147514	2147695	+	22.36233	NA	Intergenic	Intergenic	423885	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_8739	chr1	183248333	183248590	+	22.35904	NA	intron (NM_170706, intron 7 of 10)	intron (NM_170706, intron 7 of 10)	25548	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_56537	chr2	159810489	159810801	+	22.35583	NA	Intergenic	Intergenic	-14501	NM_001145909	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89325	chr6	124123834	124124029	+	22.35583	NA	Intergenic	Intergenic	-1060	NM_153355	154215	Hs.656604	NM_153355	HPRD:18168	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Na+/K+ transporting ATPase interacting 2	protein-coding
19-PTNLD28-TUMOR_peak_21366	chr11	116183749	116183920	+	22.35583	NA	Intergenic	Intergenic	459880	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_42307	chr17	49134252	49134643	+	22.35583	NA	intron (NM_001130528, intron 2 of 29)	intron (NM_001130528, intron 2 of 29)	-10118	NM_001251971	9043	Hs.463439	NM_003971	HPRD:10398	SPAG9	CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
19-PTNLD28-TUMOR_peak_11810	chr10	5567985	5568188	+	22.35583	NA	3' UTR (NM_005185, exon 1 of 1)	3' UTR (NM_005185, exon 1 of 1)	123	NR_120496	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3674	chr1	55276252	55276379	+	22.35022	NA	intron (NM_001110533, intron 4 of 9)	intron (NM_001110533, intron 4 of 9)	4579	NM_152607	163747	Hs.376018	NM_152607	HPRD:08807	C1orf177	-	chromosome 1 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_9669	chr1	205744211	205744707	+	22.33617	NA	5' UTR (NM_001135664, exon 1 of 5)	5' UTR (NM_001135664, exon 1 of 5)	151	NM_001135662	8934	Hs.115325	NM_003929	HPRD:11962	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_96685	chr7	156724740	156724944	+	22.33617	NA	Intergenic	Intergenic	-17575	NM_138400	64434	Hs.15825	NM_138400	HPRD:18485	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
19-PTNLD28-TUMOR_peak_70385	chr3	124926506	124926665	+	22.33127	NA	intron (NM_024628, intron 2 of 13)	intron (NM_024628, intron 2 of 13)	3658	NM_001195483	84561	Hs.658514	NM_024628	HPRD:11563	SLC12A8	CCC9	solute carrier family 12, member 8	protein-coding
19-PTNLD28-TUMOR_peak_37012	chr16	28222459	28222629	+	22.32258	NA	intron (NM_001270940, intron 1 of 24)	intron (NM_001270940, intron 1 of 24)	695	NM_001270940	23214	Hs.460468	NM_015171	HPRD:10525	XPO6	EXP6|RANBP20	exportin 6	protein-coding
19-PTNLD28-TUMOR_peak_92926	chr7	65859769	65859983	+	22.32022	NA	intron (NR_026873, intron 3 of 4)	SVA_E|Other|Other	5519	NR_026873	285908	Hs.50755	NM_181722	HPRD:14160	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
19-PTNLD28-TUMOR_peak_21202	chr11	112458989	112459183	+	22.31914	NA	Intergenic	Intergenic	-32561	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_71723	chr3	150651355	150651713	+	22.31914	NA	intron (NM_001256819, intron 3 of 3)	intron (NM_001256819, intron 3 of 3)	10489	NM_052995	7401	Hs.745448	NM_052995	HPRD:05905	CLRN1	RP61|USH3|USH3A	clarin 1	protein-coding
19-PTNLD28-TUMOR_peak_40473	chr17	18472796	18473031	+	22.31914	NA	intron (NR_036647, intron 12 of 16)	intron (NR_036647, intron 12 of 16)	-42753	NR_026809	80039	Hs.674403	NM_024974	HPRD:07759	FAM106A	-	family with sequence similarity 106, member A	ncRNA
19-PTNLD28-TUMOR_peak_53226	chr2	67877969	67878191	+	22.31914	NA	Intergenic	Intergenic	174614	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_11332	chr1	243174264	243174437	+	22.31130	NA	Intergenic	Intergenic	90696	NR_029401	731275	Hs.722350	NR_029401		LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
19-PTNLD28-TUMOR_peak_13592	chr10	51777497	51777804	+	22.30602	NA	Intergenic	Intergenic	29572	NM_001077665	414189	Hs.536158	NM_001077665	ENSG00000204149	AGAP6	AGAP-6|CTGLF3|bA324H6.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 6	protein-coding
19-PTNLD28-TUMOR_peak_103196	chr9	41961354	41961553	+	22.29315	NA	non-coding (NR_003670, exon 3 of 3)	non-coding (NR_003670, exon 3 of 3)	-6377	NR_015363	389741	Hs.380240	NM_203448		GLIDR	LINC01172	glioblastoma down-regulated RNA	ncRNA
19-PTNLD28-TUMOR_peak_106479	chr9	134258682	134258936	+	22.29315	NA	Intergenic	Intergenic	-46668	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline-rich coiled-coil 2B	protein-coding
19-PTNLD28-TUMOR_peak_100296	chr8	119519273	119519505	+	22.29315	NA	intron (NR_109794, intron 2 of 4)	L2c|LINE|L2	-113851	NR_038210	552860	Hs.571527	NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4361	chr1	74475974	74476194	+	22.29315	NA	Intergenic	Intergenic	187787	NM_001105659	127255	Hs.644625	NM_145258	HPRD:14485	LRRIQ3	LRRC44	leucine-rich repeats and IQ motif containing 3	protein-coding
19-PTNLD28-TUMOR_peak_106395	chr9	132552720	132552951	+	22.29315	NA	Intergenic	Intergenic	-12597	NM_014506	27348	Hs.252682	NM_014506	HPRD:16270	TOR1B	DQ1	torsin family 1, member B (torsin B)	protein-coding
19-PTNLD28-TUMOR_peak_82034	chr5	130153897	130154017	+	22.29315	NA	Intergenic	L1PA3|LINE|L1	347084	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81257	chr5	96124109	96124361	+	22.29315	NA	exon (NM_016442, exon 11 of 20)	exon (NM_016442, exon 11 of 20)	19657	NM_001040458	51752	Hs.666524	NM_016442	HPRD:06015	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_63620	chr21	41925731	41926086	+	22.29315	NA	intron (NR_073202, intron 3 of 32)	intron (NR_073202, intron 3 of 32)	76785	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_9530	chr1	204413053	204413301	+	22.28925	NA	intron (NM_002646, intron 19 of 33)	intron (NM_002646, intron 19 of 33)	-32232	NM_032833	84919	Hs.304376	NM_032833	HPRD:17892	PPP1R15B	CREP	protein phosphatase 1, regulatory subunit 15B	protein-coding
19-PTNLD28-TUMOR_peak_4009	chr1	62892002	62892187	+	22.27710	NA	Intergenic	Intergenic	-9881	NM_001017415	7398	Hs.35086	NM_003368	HPRD:04593	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_65002	chr22	29866208	29866630	+	22.27574	NA	Intergenic	CpG	-9762	NM_021076	4744	Hs.198760	NM_021076	HPRD:01204	NEFH	NFH	neurofilament, heavy polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_16643	chr11	2223490	2223938	+	22.27574	NA	Intergenic	Intergenic	29421	NR_039834	100616126		NR_039834	miRBase:MI0017318	MIR4686	-	microRNA 4686	ncRNA
19-PTNLD28-TUMOR_peak_27813	chr13	34933343	34933736	+	22.27574	NA	Intergenic	Intergenic	281283	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA
19-PTNLD28-TUMOR_peak_78995	chr5	13977102	13977289	+	22.27574	NA	Intergenic	Intergenic	-32606	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_23626	chr12	31476802	31477411	+	22.26744	NA	promoter-TSS (NR_026806)	promoter-TSS (NR_026806)	-144	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
19-PTNLD28-TUMOR_peak_3668	chr1	55260289	55260740	+	22.26472	NA	intron (NM_001114108, intron 1 of 6)	MIRb|SINE|MIR	6427	NM_001114108	55001	Hs.16230	NM_017904	HPRD:07932	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
19-PTNLD28-TUMOR_peak_68387	chr3	53189833	53190128	+	22.26472	NA	Intergenic	Intergenic	-5243	NM_212539	5580	Hs.155342	NM_006254	HPRD:01501	PRKCD	CVID9|MAY1|PKCD|nPKC-delta	protein kinase C, delta	protein-coding
19-PTNLD28-TUMOR_peak_68640	chr3	59248877	59249257	+	22.26285	NA	Intergenic	Intergenic	-213352	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_87825	chr6	46950819	46951100	+	22.26048	NA	Intergenic	Intergenic	-28284	NM_015234	221395	Hs.362806	NM_015234	HPRD:11010	GPR116	KPG_001	G protein-coupled receptor 116	protein-coding
19-PTNLD28-TUMOR_peak_1404	chr1	22739125	22739326	+	22.25267	NA	Intergenic	Intergenic	-39119	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_61292	chr20	43696189	43696587	+	22.25267	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	33365	NM_002251	3787	Hs.117780	NM_002251	HPRD:04214	KCNS1	KV9.1	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_9786	chr1	207036670	207036966	+	22.24753	NA	Intergenic	Intergenic	-2336	NM_018724	50604	Hs.272373	NM_018724		IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
19-PTNLD28-TUMOR_peak_61144	chr20	40820971	40821270	+	22.24703	NA	intron (NM_133170, intron 17 of 31)	intron (NM_133170, intron 17 of 31)	-493003	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_73864	chr4	1777817	1777981	+	22.24424	NA	Intergenic	Intergenic	-17140	NM_000142	2261	Hs.1420	NM_000142	HPRD:00624	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_77799	chr4	157924971	157925199	+	22.24353	NA	Intergenic	Intergenic	-32539	NR_036641	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_464	chr1	7702939	7703134	+	22.24353	NA	intron (NM_015215, intron 7 of 22)	intron (NM_015215, intron 7 of 22)	-128293	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_86669	chr6	31819350	31819650	+	22.24158	NA	Intergenic	LTR24B|LTR|ERV1	11209	NM_000434	4758	Hs.520037	NM_000434	HPRD:09751	NEU1	NANH|NEU|SIAL1	sialidase 1 (lysosomal sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_47608	chr19	14259029	14259360	+	22.23739	NA	3' UTR (NM_014921, exon 23 of 23)	3' UTR (NM_014921, exon 23 of 23)	11230	NR_045214	100507373	Hs.720437	NR_045214	ENSG00000267169	LOC100507373	-	uncharacterized LOC100507373	ncRNA
19-PTNLD28-TUMOR_peak_75815	chr4	77993644	77993773	+	22.23739	NA	intron (NM_006835, intron 1 of 6)	AluJr|SINE|Alu	3417	NM_006835	10983	Hs.518827	NM_006835	HPRD:16690	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
19-PTNLD28-TUMOR_peak_48501	chr19	32834519	32835011	+	22.22275	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-1749	NM_014910	22847	Hs.205392	NM_014910	HPRD:11722	ZNF507	-	zinc finger protein 507	protein-coding
19-PTNLD28-TUMOR_peak_68600	chr3	58390267	58390452	+	22.22178	NA	intron (NM_001289100, intron 11 of 16)	MIRb|SINE|MIR	29207	NR_033384	5162	Hs.161357	NM_000925	HPRD:01530	PDHB	PDHBD|PDHE1-B|PHE1B	pyruvate dehydrogenase (lipoamide) beta	protein-coding
19-PTNLD28-TUMOR_peak_78455	chr4	188275952	188276184	+	22.22178	NA	intron (NR_038931, intron 1 of 4)	intron (NR_038931, intron 1 of 4)	150699	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	ncRNA
19-PTNLD28-TUMOR_peak_5279	chr1	108029112	108029282	+	22.22178	NA	Intergenic	Intergenic	201929	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_85008	chr6	4789514	4789736	+	22.22178	NA	intron (NM_004824, intron 1 of 6)	intron (NM_004824, intron 1 of 6)	12945	NM_004824	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_53614	chr2	75503670	75503832	+	22.22178	NA	Intergenic	Intergenic	-77106	NM_001058	6869	Hs.633301	NM_001058	HPRD:01208	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_66934	chr3	16090282	16090493	+	22.22178	NA	Intergenic	Intergenic	-125797	NM_054110	117248	Hs.411308	NM_054110	HPRD:13563	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_55576	chr2	128491795	128491993	+	22.22178	NA	intron (NM_018383, intron 7 of 21)	intron (NM_018383, intron 7 of 21)	33297	NM_032740	84826	Hs.345849	NM_032740	HPRD:14683	SFT2D3	-	SFT2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_65067	chr22	30700622	30701120	+	22.20965	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	-15255	NM_001037666	652968	Hs.444950	NM_001037666	ENSG00000239282	GATSL3	-	GATS protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_79584	chr5	38651021	38651275	+	22.20555	NA	intron (NR_103554, intron 6 of 8)	intron (NR_103554, intron 6 of 8)	-55641	NM_002310	3977	Hs.133421	NM_002310	HPRD:01048	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_69591	chr3	107616618	107616863	+	22.20555	NA	intron (NR_015394, intron 1 of 2)	intron (NR_015394, intron 1 of 2)	14688	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
19-PTNLD28-TUMOR_peak_60399	chr20	30090949	30091229	+	22.20555	NA	Intergenic	Intergenic	-11124	NM_030789	81502	Hs.373741	NM_030789	HPRD:06166	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1|dJ324O17.1	histocompatibility (minor) 13	protein-coding
19-PTNLD28-TUMOR_peak_99952	chr8	105412740	105412962	+	22.20555	NA	intron (NM_001385, intron 7 of 9)	intron (NM_001385, intron 7 of 9)	60827	NM_001257317	81501	Hs.652230	NM_030788	HPRD:07295	DCSTAMP	FIND|TM7SF4|hDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_2348	chr1	35764189	35764394	+	22.19568	NA	intron (NM_005095, intron 1 of 29)	LTR41|LTR|ERVL	29723	NM_005095	9202	Hs.269211	NM_005095	HPRD:10326	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger, MYM-type 4	protein-coding
19-PTNLD28-TUMOR_peak_66942	chr3	16166244	16166407	+	22.19568	NA	Intergenic	Intergenic	-49859	NM_054110	117248	Hs.411308	NM_054110	HPRD:13563	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_16533	chr11	925713	926129	+	22.19568	NA	5' UTR (NM_001242837, exon 1 of 22)	5' UTR (NM_001242837, exon 1 of 22)	112	NM_012305	161	Hs.19121	NM_012305	HPRD:06256	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor-related protein complex 2, alpha 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_26719	chr12	121498177	121498594	+	22.18986	NA	Intergenic	Intergenic	-21340	NM_198213	8638	Hs.118633	NM_003733	HPRD:04473	OASL	OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase-like	protein-coding
19-PTNLD28-TUMOR_peak_31906	chr14	96735388	96735658	+	22.18986	NA	Intergenic	Intergenic	12976	NM_000710	623	Hs.525572	NM_000710	HPRD:02639	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
19-PTNLD28-TUMOR_peak_18720	chr11	58555880	58556122	+	22.18986	NA	Intergenic	L1PA15-16|LINE|L1	55996	NM_145016	219970	Hs.254271	NM_145016	HPRD:16568	GLYATL2	BXMAS2-10|GATF-B	glycine-N-acyltransferase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_21473	chr11	117981881	117982235	+	22.18986	NA	intron (NM_001290094, intron 7 of 12)	intron (NM_001290094, intron 7 of 12)	-24550	NR_038318	100526771	Hs.627426	NR_038318	ENSG00000255274	TMPRSS4-AS1	-	TMPRSS4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29391	chr14	21732404	21732522	+	22.18558	NA	intron (NM_031314, intron 1 of 8)	intron (NM_031314, intron 1 of 8)	5175	NM_004500	3183	Hs.508848	NM_004500	HPRD:01243	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
19-PTNLD28-TUMOR_peak_38279	chr16	67011600	67011887	+	22.18558	NA	Intergenic	Intergenic	10365	NM_001185176	23491	Hs.268700	NM_012122	HPRD:07014	CES3	ES31	carboxylesterase 3	protein-coding
19-PTNLD28-TUMOR_peak_26399	chr12	113536327	113536580	+	22.18558	NA	TTS (NM_001193520)	TTS (NM_001193520)	36951	NM_001301202	8437	Hs.528693	NM_004658	HPRD:04986	RASAL1	RASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
19-PTNLD28-TUMOR_peak_47659	chr19	14647814	14647967	+	22.18137	NA	intron (NR_038103, intron 1 of 12)	intron (NR_038103, intron 1 of 12)	7511	NR_038103	9524	Hs.515642	NM_004868	HPRD:17076	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
19-PTNLD28-TUMOR_peak_93280	chr7	73752996	73753347	+	22.18137	NA	exon (NM_032421, exon 3 of 16)	exon (NM_032421, exon 3 of 16)	49366	NM_003388	7461	Hs.647018	NM_003388	HPRD:09140	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-GLY domain containing linker protein 2	protein-coding
19-PTNLD28-TUMOR_peak_84893	chr6	3422517	3422663	+	22.18137	NA	intron (NM_001286456, intron 1 of 3)	intron (NM_001286456, intron 1 of 3)	22657	NR_104448	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_36751	chr16	21782006	21782176	+	22.17618	NA	Intergenic	Intergenic	48404	NR_003370	730092	Hs.31290	NR_003370		RRN3P1	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_106802	chr9	139920131	139920334	+	22.17618	NA	intron (NM_212533, intron 1 of 48)	intron (NM_212533, intron 1 of 48)	-1684	NM_207511	401563	Hs.522509	NM_207511	HPRD:16942	C9orf139	-	chromosome 9 open reading frame 139	protein-coding
19-PTNLD28-TUMOR_peak_98008	chr8	29970925	29971187	+	22.17618	NA	intron (NM_001128208, intron 3 of 3)	intron (NM_001128208, intron 3 of 3)	18134	NM_015344	23484	Hs.146585	NM_015344	HPRD:09551	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript-like 1	protein-coding
19-PTNLD28-TUMOR_peak_12033	chr10	12109415	12109586	+	22.17137	NA	Intergenic	Intergenic	-1416	NM_018706	55526	Hs.104980	NM_018706	HPRD:09917	DHTKD1	AMOXAD|CMT2Q	dehydrogenase E1 and transketolase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_86510	chr6	30736813	30736987	+	22.13455	NA	Intergenic	Intergenic	-24573	NM_003897	8870	Hs.76095	NM_003897	HPRD:04295	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
19-PTNLD28-TUMOR_peak_101496	chr8	142454509	142454762	+	22.13390	NA	intron (NR_102363, intron 19 of 27)	intron (NR_102363, intron 19 of 27)	23147	NM_032611	11156	Hs.43666	NM_007079		PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
19-PTNLD28-TUMOR_peak_73673	chr3	197358973	197359091	+	22.12794	NA	Intergenic	LTR13|LTR|ERVK	-4280	NR_003266	220729	Hs.478854	NR_003266	ENSG00000214135	LOC220729	-	succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10339	chr1	224095858	224096053	+	22.12605	NA	Intergenic	Intergenic	-62281	NM_005426	7159	Hs.523968	NM_005426	HPRD:11803	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_31089	chr14	70394829	70395039	+	22.12520	NA	intron (NM_001034852, intron 1 of 11)	intron (NM_001034852, intron 1 of 11)	48820	NM_022137	64093	Hs.497349	NM_022137	HPRD:12244	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
19-PTNLD28-TUMOR_peak_55664	chr2	130649309	130649468	+	22.12520	NA	Intergenic	Intergenic	-31362	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_15485	chr10	106065411	106065765	+	22.12520	NA	Intergenic	Intergenic	-17534	NR_120622	101927472	Hs.670333	NR_120622		LOC101927472	-	uncharacterized LOC101927472	ncRNA
19-PTNLD28-TUMOR_peak_96135	chr7	146625983	146626162	+	22.12520	NA	intron (NM_014141, intron 3 of 23)	L1PA3|LINE|L1	-17836	NR_049838	100847078		NR_049838		MIR548AQ	-	microRNA 548aq	ncRNA
19-PTNLD28-TUMOR_peak_83568	chr5	159016026	159016423	+	22.12520	NA	Intergenic	Intergenic	-122940	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LOC285627	-	uncharacterized LOC285627	ncRNA
19-PTNLD28-TUMOR_peak_98796	chr8	55100601	55100831	+	22.12520	NA	Intergenic	HERVL40-int|LTR|ERVL	52935	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_48504	chr19	32849331	32849530	+	22.12520	NA	intron (NM_001136156, intron 4 of 6)	L2c|LINE|L2	12916	NM_001136156	22847	Hs.205392	NM_014910	HPRD:11722	ZNF507	-	zinc finger protein 507	protein-coding
19-PTNLD28-TUMOR_peak_28951	chr13	106631939	106632183	+	22.12520	NA	Intergenic	Intergenic	272882	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_25440	chr12	80474017	80474182	+	22.12520	NA	Intergenic	L1PA3|LINE|L1	-129134	NM_173591	283310	Hs.723594	NM_173591	HPRD:08815	OTOGL	C12orf64|DFNB84B	otogelin-like	protein-coding
19-PTNLD28-TUMOR_peak_87752	chr6	45642525	45642744	+	22.11922	NA	Intergenic	L1PA2|LINE|L1	252320	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_34128	chr15	67442850	67443077	+	22.11859	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	12604	NM_001145103	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_79986	chr5	55839923	55840135	+	22.11859	NA	intron (NM_001287053, intron 2 of 5)	MER117|DNA|hAT-Charlie	62030	NM_001287053	101928448	Hs.208052	NM_001287053		LOC101928448	-	uncharacterized LOC101928448	protein-coding
19-PTNLD28-TUMOR_peak_72996	chr3	186938102	186938246	+	22.11859	NA	intron (NM_001879, intron 15 of 15)	intron (NM_001879, intron 15 of 15)	-12757	NR_110052	101929106	Hs.640145	NR_110052	ENSG00000198491	LOC101929106	-	uncharacterized LOC101929106	ncRNA
19-PTNLD28-TUMOR_peak_84375	chr5	177502979	177503352	+	22.11859	NA	Intergenic	Intergenic	-37391	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_10012	chr1	213154535	213154783	+	22.11859	NA	intron (NM_001301056, intron 7 of 7)	intron (NM_001301056, intron 7 of 7)	30797	NM_001136475	79805	Hs.96885	NM_024749	HPRD:08574	VASH2	-	vasohibin 2	protein-coding
19-PTNLD28-TUMOR_peak_59999	chr20	17743938	17744087	+	22.11859	NA	Intergenic	Intergenic	63419	NM_001014977	140836	Hs.115366	NM_178477	HPRD:12759	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
19-PTNLD28-TUMOR_peak_14230	chr10	73496913	73497362	+	22.11859	NA	intron (NM_022124, intron 32 of 67)	MIRb|SINE|MIR	444	NM_001168390	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_85110	chr6	6834965	6835497	+	22.11759	NA	Intergenic	LTR16C|LTR|ERVL	-212172	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45699	chr18	47536279	47536464	+	22.11704	NA	intron (NM_001080467, intron 4 of 39)	intron (NM_001080467, intron 4 of 39)	116562	NR_036204	100422865		NR_036204		MIR4320	-	microRNA 4320	ncRNA
19-PTNLD28-TUMOR_peak_52000	chr2	31479066	31479335	+	22.11704	NA	intron (NM_014600, intron 3 of 5)	MIRb|SINE|MIR	22320	NM_014600	30845	Hs.368808	NM_014600		EHD3	PAST3	EH-domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_82859	chr5	142339984	142340167	+	22.11704	NA	intron (NM_015071, intron 11 of 22)	Tigger7|DNA|TcMar-Tigger	-91600	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27363	chr13	20945304	20945477	+	22.11704	NA	Intergenic	Intergenic	62595	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_96942	chr8	6893403	6893549	+	22.11678	NA	Intergenic	Intergenic	-6465	NR_073421	724068	Hs.690600	NR_073421	ENSG00000234178	DEFA11P	DEFAP3	defensin, alpha 11 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_28443	chr13	73414062	73414240	+	22.11678	NA	intron (NM_006346, intron 9 of 17)	intron (NM_006346, intron 9 of 17)	-57885	NM_014953	22894	Hs.744104	NM_014953	HPRD:06338	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
19-PTNLD28-TUMOR_peak_100072	chr8	109735189	109735393	+	22.11678	NA	Intergenic	Intergenic	64479	NM_153015	157753	Hs.99439	NM_153015		TMEM74	NET36	transmembrane protein 74	protein-coding
19-PTNLD28-TUMOR_peak_67627	chr3	39489474	39489616	+	22.11678	NA	Intergenic	Intergenic	-19519	NM_001278322	4336	Hs.121333	NM_182935	HPRD:02973	MOBP	-	myelin-associated oligodendrocyte basic protein	protein-coding
19-PTNLD28-TUMOR_peak_58398	chr2	219017592	219017734	+	22.11678	NA	Intergenic	Intergenic	14053	NM_000634	3577	Hs.194778	NM_000634	HPRD:00908	CXCR1	C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA	chemokine (C-X-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_64797	chr22	25164855	25165051	+	22.11678	NA	intron (NM_001008496, intron 1 of 20)	intron (NM_001008496, intron 1 of 20)	4485	NR_001283	7152	Hs.381281	NR_001283		TOP1P2	-	topoisomerase (DNA) I pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_21390	chr11	116613630	116613768	+	22.11678	NA	Intergenic	Intergenic	30015	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_99918	chr8	104220235	104220416	+	22.11678	NA	intron (NM_001024372, intron 1 of 1)	intron (NM_001024372, intron 1 of 1)	-35957	NR_109954	100499183	Hs.654812	NR_034092	ENSG00000247081	BAALC-AS1	-	BAALC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35062	chr15	86860675	86860900	+	22.11678	NA	promoter-TSS (NR_046012)	promoter-TSS (NR_046012)	-588	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108995	chrX	101975518	101975711	+	22.11678	NA	promoter-TSS (NM_001142525)	promoter-TSS (NM_001142525)	-28	NM_001142524	80823	Hs.4276	NM_030639	HPRD:10028	BHLHB9	GASP3|p60TRP	basic helix-loop-helix domain containing, class B, 9	protein-coding
19-PTNLD28-TUMOR_peak_39675	chr17	2048049	2048253	+	22.11678	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-56096	NM_001282326	23293	Hs.448342	NM_017575	HPRD:06502	SMG6	C17orf31|EST1A|SMG-6|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_20516	chr11	89334477	89334692	+	22.11678	NA	Intergenic	L1MA9|LINE|L1	-11805	NM_001143837	50507	Hs.371036	NM_016931	HPRD:09243	NOX4	KOX|KOX-1|RENOX	NADPH oxidase 4	protein-coding
19-PTNLD28-TUMOR_peak_89133	chr6	112229665	112229793	+	22.11678	NA	Intergenic	L1PA2|LINE|L1	-35074	NM_002037	2534	Hs.390567	NM_002037	HPRD:00655	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_25523	chr12	89413482	89413636	+	22.11678	NA	promoter-TSS (NR_038385)	promoter-TSS (NR_038385)	-90	NR_038385	728084	Hs.132563	NR_038385	ENSG00000246363	LOC728084	-	uncharacterized LOC728084	ncRNA
19-PTNLD28-TUMOR_peak_38158	chr16	59598648	59598778	+	22.11678	NA	Intergenic	L1PA2|LINE|L1	190382	NR_028471	644649	Hs.250392	NR_028471		APOOP5	-	apolipoprotein O pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_54634	chr2	104283849	104284162	+	22.11678	NA	Intergenic	Intergenic	740785	NR_037885	100287010	Hs.694603	NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
19-PTNLD28-TUMOR_peak_77801	chr4	157966820	157966963	+	22.11678	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-30386	NM_001166061	2743	Hs.32973	NM_000824	HPRD:11751	GLRB	HKPX2	glycine receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_97272	chr8	14660982	14661284	+	22.11678	NA	intron (NM_139167, intron 1 of 7)	L1PA3|LINE|L1	49886	NR_029875	494332		NR_029875		MIR383	MIRN383|hsa-mir-383	microRNA 383	ncRNA
19-PTNLD28-TUMOR_peak_79262	chr5	26476654	26476772	+	22.11678	NA	Intergenic	L1PA3|LINE|L1	561976	NM_016279	1007	Hs.272212	NM_016279	HPRD:13021	CDH9	-	cadherin 9, type 2 (T1-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_3929	chr1	61563099	61563297	+	22.11678	NA	intron (NM_001145511, intron 2 of 10)	intron (NM_001145511, intron 2 of 10)	15218	NM_001134673	4774	Hs.740757	NM_005595	HPRD:09007	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
19-PTNLD28-TUMOR_peak_4329	chr1	71365543	71365737	+	22.11678	NA	intron (NR_028293, intron 2 of 4)	intron (NR_028293, intron 2 of 4)	-146549	NR_038420	100132618	Hs.720513	NR_038420		ZRANB2-AS1	-	ZRANB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_17868	chr11	32860183	32860427	+	22.11678	NA	intron (NM_024081, intron 3 of 5)	intron (NM_024081, intron 3 of 5)	8824	NM_024081	79056	Hs.471695	NM_024081	HPRD:15187	PRRG4	PRGP4|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_8070	chr1	168572828	168572971	+	22.11678	NA	Intergenic	LTR88a|LTR|Gypsy?	27188	NM_002995	6375	Hs.546295	NM_002995	HPRD:02595	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	chemokine (C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_28932	chr13	105402850	105403053	+	22.11678	NA	Intergenic	Intergenic	-715265	NM_001161814	267012	Hs.381382	NM_172370	HPRD:07591	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
19-PTNLD28-TUMOR_peak_62843	chr21	17341909	17342146	+	22.11678	NA	Intergenic	Intergenic	-100815	NR_027790	388815	Hs.473394	NM_001005732	HPRD:10746	MIR99AHG	C21orf34|C21orf35|FLJ38295|LINC00478|MONC	mir-99a-let-7c cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_107432	chrX	5081131	5081271	+	22.11678	NA	Intergenic	LTR2B|LTR|ERV1	-529588	NR_110390	101928201	Hs.586488	NR_110390	ENSG00000236513	LOC101928201	-	uncharacterized LOC101928201	ncRNA
19-PTNLD28-TUMOR_peak_31579	chr14	87890099	87890210	+	22.11678	NA	Intergenic	L1PA3|LINE|L1	518032	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	ncRNA
19-PTNLD28-TUMOR_peak_16831	chr11	5571993	5572140	+	22.11678	NA	Intergenic	Intergenic	-5313	NM_001005289	390067	Hs.554540	NM_001005289	HPRD:15014	OR52H1	OR11-41|OR11-45	olfactory receptor, family 52, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_3432	chr1	50526120	50526292	+	22.11678	NA	intron (NM_001144777, intron 1 of 6)	intron (NM_001144777, intron 1 of 6)	12520	NM_001144777	1996	Hs.213050	NM_021952	HPRD:01343	ELAVL4	HUD|PNEM	ELAV like neuron-specific RNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_20034	chr11	74640919	74641038	+	22.11678	NA	intron (NM_001270380, intron 6 of 14)	intron (NM_001270380, intron 6 of 14)	19254	NM_001270380	143570	Hs.370145	NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
19-PTNLD28-TUMOR_peak_52903	chr2	57987071	57987367	+	22.11678	NA	Intergenic	Intergenic	-147567	NM_001288837	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_65307	chr22	36448788	36448929	+	22.11678	NA	Intergenic	Intergenic	-24273	NM_001082578	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_94833	chr7	109864776	109865041	+	22.11678	NA	Intergenic	Intergenic	-264638	NR_003024	442720	Hs.530096	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	eukaryotic translation initiation factor 3, subunit I pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_98092	chr8	32435639	32435878	+	22.11678	NA	intron (NM_013964, intron 1 of 11)	AluSx3|SINE|Alu	-17586	NM_001159999	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_58598	chr2	223846852	223847001	+	22.11678	NA	Intergenic	Intergenic	-69722	NM_080671	23704	Hs.348522	NM_080671	HPRD:09689	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_69027	chr3	72599155	72599367	+	22.11678	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-103487	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_79729	chr5	43389883	43390092	+	22.11678	NA	intron (NM_148672, intron 1 of 2)	intron (NM_148672, intron 1 of 2)	22501	NM_148672	56477	Hs.656904	NM_019846		CCL28	CCK1|MEC|SCYA28	chemokine (C-C motif) ligand 28	protein-coding
19-PTNLD28-TUMOR_peak_77405	chr4	145343091	145343301	+	22.11678	NA	Intergenic	L2c|LINE|L2	-223952	NM_022475	64399	Hs.507991	NM_022475		HHIP	HIP	hedgehog interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_64589	chr22	22171026	22171198	+	22.11678	NA	intron (NM_002745, intron 1 of 8)	L3|LINE|CR1	50858	NM_002745	5594	Hs.431850	NM_002745	HPRD:01496	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_108885	chrX	88041984	88042115	+	22.11678	NA	Intergenic	L1PA3|LINE|L1	39823	NM_001184771	53336	Hs.458292	NM_033048	HPRD:06474	CPXCR1	CT77	CPX chromosome region, candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_89729	chr6	141647598	141647862	+	22.11678	NA	Intergenic	MER44D|DNA|TcMar-Tigger	642779	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_76820	chr4	120762682	120762889	+	22.11678	NA	Intergenic	Intergenic	-37115	NR_110660	101927007	Hs.143958	NR_110660	ENSG00000250772	LINC01365	-	long intergenic non-protein coding RNA 1365	ncRNA
19-PTNLD28-TUMOR_peak_108603	chrX	67822567	67822700	+	22.11678	NA	Intergenic	L1PA4|LINE|L1	-44878	NM_001142503	9754	Hs.95140	NM_014725	HPRD:06730	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR-related lipid transfer (START) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_79794	chr5	49754228	49754366	+	22.11678	NA	Intergenic	L1PA3|LINE|L1	-17063	NM_198449	133418	Hs.561411	NM_198449	HPRD:13271	EMB	GP70	embigin	protein-coding
19-PTNLD28-TUMOR_peak_71447	chr3	143393281	143393504	+	22.11678	NA	intron (NM_173653, intron 5 of 15)	intron (NM_173653, intron 5 of 15)	173981	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_69700	chr3	110870401	110870562	+	22.11678	NA	intron (NM_001243288, intron 7 of 8)	intron (NM_001243288, intron 7 of 8)	79466	NM_001243288	25945	Hs.293917	NM_015480		PVRL3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRR3	poliovirus receptor-related 3	protein-coding
19-PTNLD28-TUMOR_peak_49411	chr19	46080433	46080636	+	22.11678	NA	intron (NM_025136, intron 1 of 1)	intron (NM_025136, intron 1 of 1)	7588	NM_001017989	80207	Hs.466945	NM_025136	HPRD:05956	OPA3	MGA3	optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	protein-coding
19-PTNLD28-TUMOR_peak_14010	chr10	70853164	70853307	+	22.11678	NA	intron (NR_036430, intron 1 of 1)	intron (NR_036430, intron 1 of 1)	5407	NR_036430	5552	Hs.1908	NM_002727	HPRD:01513	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
19-PTNLD28-TUMOR_peak_17668	chr11	23207178	23207447	+	22.11678	NA	Intergenic	HERVH-int|LTR|ERV1	233424	NR_107021	102465860		NR_107021		MIR8054	hsa-mir-8054	microRNA 8054	ncRNA
19-PTNLD28-TUMOR_peak_102529	chr9	26062333	26062520	+	22.11678	NA	Intergenic	Intergenic	-4247	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
19-PTNLD28-TUMOR_peak_18620	chr11	57023145	57023316	+	22.11678	NA	Intergenic	L1MB8|LINE|L1	-18303	NM_005161	187	Hs.438311	NM_005161	HPRD:02503	APLNR	AGTRL1|APJ|APJR|HG11	apelin receptor	protein-coding
19-PTNLD28-TUMOR_peak_59390	chr20	516707	516903	+	22.11678	NA	intron (NM_177559, intron 1 of 13)	intron (NM_177559, intron 1 of 13)	7677	NM_177560	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_93896	chr7	91111581	91111692	+	22.11678	NA	Intergenic	L1PA3|LINE|L1	217853	NM_003505	8321	Hs.94234	NM_003505	HPRD:04558	FZD1	-	frizzled class receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_89728	chr6	141424424	141424648	+	22.11678	NA	Intergenic	Intergenic	419585	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_75690	chr4	75533908	75534095	+	22.11678	NA	Intergenic	Intergenic	53410	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_28888	chr13	102301948	102302141	+	22.11678	NA	intron (NM_001271755, intron 6 of 9)	L2b|LINE|L2	159741	NM_001271756	9358	Hs.696554	NM_004791	HPRD:07253	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
19-PTNLD28-TUMOR_peak_80674	chr5	73463393	73463537	+	22.11678	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	140685	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_101295	chr8	138505180	138505329	+	22.11678	NA	Intergenic	Intergenic	-79423	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_68632	chr3	58984275	58984494	+	22.11678	NA	intron (NR_110820, intron 2 of 2)	intron (NR_110820, intron 2 of 2)	51331	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_75384	chr4	56245345	56245578	+	22.11678	NA	intron (NR_037969, intron 1 of 3)	LTR3B_|LTR|ERVK	6286	NR_037969	100506462	Hs.718667	NR_037969	ENSG00000249700	SRD5A3-AS1	-	SRD5A3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72431	chr3	174323395	174323508	+	22.11678	NA	Intergenic	L1PA3|LINE|L1	-253660	NM_207015	254827	Hs.565848	NM_207015	HPRD:16388	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_97312	chr8	16989147	16989323	+	22.11678	NA	Intergenic	LTR41|LTR|ERVL	-24601	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	zinc finger, DHHC-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_67499	chr3	36435141	36435349	+	22.11678	NA	intron (NM_003149, intron 1 of 10)	MLT1A0|LTR|ERVL-MaLR	13266	NM_003149	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_51151	chr2	11758249	11758380	+	22.11678	NA	intron (NM_014668, intron 21 of 32)	intron (NM_014668, intron 21 of 32)	52015	NM_012344	23620	Hs.131138	NM_012344	HPRD:05704	NTSR2	NTR2	neurotensin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_98702	chr8	50538402	50538656	+	22.11678	NA	Intergenic	Intergenic	-283820	NM_001287813	54212	Hs.584914	NM_018967	HPRD:16373	SNTG1	G1SYN|SYN4	syntrophin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_33007	chr15	34563860	34563985	+	22.11678	NA	intron (NM_001042497, intron 1 of 23)	intron (NM_001042497, intron 1 of 23)	46724	NM_001286420	51234	Hs.250905	NM_016454	HPRD:14233	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_72172	chr3	166381042	166381274	+	22.11678	NA	Intergenic	LTR10A|LTR|ERV1	716913	NM_001199202	79740	Hs.478143	NM_024687	HPRD:08015	ZBBX	-	zinc finger, B-box domain containing	protein-coding
19-PTNLD28-TUMOR_peak_17069	chr11	10161318	10161505	+	22.11678	NA	intron (NM_030962, intron 2 of 39)	intron (NM_030962, intron 2 of 39)	154343	NM_030962	81846	Hs.577252	NM_030962	HPRD:09649	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_82226	chr5	133681795	133682039	+	22.11678	NA	intron (NM_001300853, intron 3 of 12)	MER39|LTR|ERV1	20848	NM_016508	51265	Hs.719926	NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin-dependent kinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_91430	chr7	18392079	18392255	+	22.11678	NA	intron (NM_001204144, intron 2 of 12)	intron (NM_001204144, intron 2 of 12)	-143202	NM_001204146	9734	Hs.196054	NM_014707	HPRD:05944	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
19-PTNLD28-TUMOR_peak_23872	chr12	43732734	43732938	+	22.11678	NA	Intergenic	Intergenic	212888	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_101897	chr9	530804	530952	+	22.11678	NA	intron (NM_015158, intron 1 of 11)	AluJb|SINE|Alu	26183	NM_015158	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_77996	chr4	169781578	169781728	+	22.11678	NA	intron (NM_001166110, intron 1 of 11)	intron (NM_001166110, intron 1 of 11)	28497	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_33469	chr15	46906890	46907110	+	22.11678	NA	Intergenic	L1P1|LINE|L1	-569403	NM_001198999	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_24598	chr12	55371064	55371197	+	22.11678	NA	intron (NM_001136030, intron 1 of 10)	intron (NM_001136030, intron 1 of 10)	-3614	NM_001261844	9840	Hs.33187	NM_014796	ENSG00000135426	TESPA1	KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
19-PTNLD28-TUMOR_peak_26037	chr12	106682304	106682445	+	22.11678	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-14195	NM_001286262	255394	Hs.696047	NM_152772	HPRD:17555	TCP11L2	-	t-complex 11, testis-specific-like 2	protein-coding
19-PTNLD28-TUMOR_peak_89465	chr6	131689733	131689996	+	22.11678	NA	Intergenic	Intergenic	118565	NM_004842	9465	Hs.486483	NM_004842	HPRD:16065	AKAP7	AKAP15|AKAP18	A kinase (PRKA) anchor protein 7	protein-coding
19-PTNLD28-TUMOR_peak_8928	chr1	186919804	186919956	+	22.11678	NA	intron (NM_024420, intron 13 of 17)	intron (NM_024420, intron 13 of 17)	121848	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_1155	chr1	17494607	17494840	+	22.11678	NA	Intergenic	Intergenic	-36898	NM_013358	29943	Hs.412941	NM_013358	HPRD:06395	PADI1	HPAD10|PAD1|PDI|PDI1	peptidyl arginine deiminase, type I	protein-coding
19-PTNLD28-TUMOR_peak_17758	chr11	28588258	28588451	+	22.11678	NA	Intergenic	Intergenic	-89259	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_92575	chr7	51434872	51435015	+	22.11678	NA	Intergenic	Intergenic	-50428	NM_001287436	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_70887	chr3	132670576	132670707	+	22.11678	NA	Intergenic	L1HS|LINE|L1	-86491	NM_001136469	66000	Hs.191616	NM_023943	HPRD:11329	TMEM108	CT124	transmembrane protein 108	protein-coding
19-PTNLD28-TUMOR_peak_75537	chr4	65137433	65137920	+	22.11678	NA	Intergenic	Intergenic	137502	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
19-PTNLD28-TUMOR_peak_75716	chr4	76480612	76480758	+	22.11678	NA	promoter-TSS (NM_001257072)	promoter-TSS (NM_001257072)	-573	NM_178497	152816	Hs.24510	NM_178497	HPRD:08040	C4orf26	AI2A4	chromosome 4 open reading frame 26	protein-coding
19-PTNLD28-TUMOR_peak_15168	chr10	100134403	100134573	+	22.11678	NA	Intergenic	Intergenic	20576	NR_031619	100302133		NR_031619		MIR1287	MIRN1287|hsa-mir-1287	microRNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_82885	chr5	142735391	142735565	+	22.11678	NA	intron (NM_001018075, intron 2 of 8)	intron (NM_001018075, intron 2 of 8)	47776	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_69349	chr3	97266446	97266597	+	22.11678	NA	intron (NM_001080448, intron 11 of 17)	L1PA4|LINE|L1	108084	NM_001278300	285220	Hs.653244	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
19-PTNLD28-TUMOR_peak_74659	chr4	17331787	17332008	+	22.11678	NA	Intergenic	LTR82B|LTR|ERVL	181960	NM_000320	5860	Hs.75438	NM_000320	HPRD:02025	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
19-PTNLD28-TUMOR_peak_25450	chr12	80945714	80945934	+	22.11678	NA	intron (NM_001145026, intron 22 of 41)	MER5A|DNA|hAT-Charlie	107698	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
19-PTNLD28-TUMOR_peak_91916	chr7	32748088	32748209	+	22.11678	NA	intron (NR_036680, intron 2 of 16)	L1PA3|LINE|L1	10632	NR_036680	100129460	Hs.633705	NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_71199	chr3	138698636	138698845	+	22.11678	NA	Intergenic	Intergenic	26370	NM_001134659	729627	Hs.121314	NM_001134659	ENSG00000206260	PRR23A	-	proline rich 23A	protein-coding
19-PTNLD28-TUMOR_peak_95461	chr7	133431160	133431329	+	22.11678	NA	intron (NM_021807, intron 10 of 17)	intron (NM_021807, intron 10 of 17)	78397	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
19-PTNLD28-TUMOR_peak_88155	chr6	57200081	57200205	+	22.11678	NA	intron (NM_000947, intron 5 of 14)	L1PA3|LINE|L1	17728	NM_001282487	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	primase, DNA, polypeptide 2 (58kDa)	protein-coding
19-PTNLD28-TUMOR_peak_102578	chr9	27861968	27862109	+	22.11678	NA	Intergenic	Intergenic	-288174	NM_001256054	203228	Hs.493639	NM_018325	HPRD:12975	C9orf72	ALSFTD|FTDALS	chromosome 9 open reading frame 72	protein-coding
19-PTNLD28-TUMOR_peak_27887	chr13	39939208	39939531	+	22.11678	NA	intron (NM_005780, intron 3 of 3)	intron (NM_005780, intron 3 of 3)	237987	NM_005780	10186	Hs.507798	NM_005780	HPRD:09464	LHFP	-	lipoma HMGIC fusion partner	protein-coding
19-PTNLD28-TUMOR_peak_490	chr1	8100748	8100932	+	22.11678	NA	Intergenic	LTR16A|LTR|ERVL	-14447	NM_018948	54206	Hs.605445	NM_018948	HPRD:09218	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_12967	chr10	36312937	36313145	+	22.11678	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	245811	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_76234	chr4	89580630	89580760	+	22.11678	NA	intron (NM_014606, intron 10 of 25)	intron (NM_014606, intron 10 of 25)	38328	NM_153757	266812	Hs.12554	NM_153757	HPRD:17626	NAP1L5	DRLM	nucleosome assembly protein 1-like 5	protein-coding
19-PTNLD28-TUMOR_peak_81486	chr5	108804578	108804734	+	22.11678	NA	Intergenic	Intergenic	-58981	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_104282	chr9	88721910	88722051	+	22.11678	NA	Intergenic	Intergenic	-6864	NM_177937	51280	Hs.494337	NM_016548	HPRD:08428	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_70590	chr3	127689905	127690101	+	22.11678	NA	intron (NM_207335, intron 4 of 4)	intron (NM_207335, intron 4 of 4)	48101	NM_207335	166348	Hs.132087	NM_207335	HPRD:17001	KBTBD12	KLHDC6	kelch repeat and BTB (POZ) domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_35344	chr15	94649160	94649416	+	22.11678	NA	intron (NR_120320, intron 1 of 8)	intron (NR_120320, intron 1 of 8)	1879	NR_120320	101927112	Hs.134687	NR_120320	ENSG00000259724	LOC101927112	-	uncharacterized LOC101927112	ncRNA
19-PTNLD28-TUMOR_peak_32557	chr15	22923572	22923851	+	22.08728	NA	intron (NM_014608, intron 1 of 30)	intron (NM_014608, intron 1 of 30)	31062	NM_001287810	23191	Hs.26704	NM_014608	HPRD:05890	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16986	chr11	8742867	8743034	+	22.06849	NA	intron (NM_139157, intron 3 of 18)	intron (NM_139157, intron 3 of 18)	35964	NR_002977	677826	Hs.745552	NR_002977		SNORA45B	ACA3-2|SNORA45	small nucleolar RNA, H/ACA box 45B	snoRNA
19-PTNLD28-TUMOR_peak_40719	chr17	25574415	25574727	+	22.06304	NA	Intergenic	Intergenic	46451	NR_039748	100616277		NR_039748	miRBase:MI0016889	MIR4522	-	microRNA 4522	ncRNA
19-PTNLD28-TUMOR_peak_92951	chr7	66207381	66207548	+	22.06022	NA	intron (NM_001287060, intron 3 of 9)	L2c|LINE|L2	1821	NM_001287062	27342	Hs.530053	NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_86253	chr6	27721920	27722109	+	22.06022	NA	Intergenic	Intergenic	-7509	NR_038929	100131289	Hs.200573	NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
19-PTNLD28-TUMOR_peak_18754	chr11	59035120	59035497	+	22.05985	NA	Intergenic	Intergenic	-54814	NM_001039396	219972	Hs.744920	NM_001039396	ENSG00000197629	MPEG1	MPG1|MPS1|Mpg-1	macrophage expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_42802	chr17	61045935	61046096	+	22.05949	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-40883	NM_025185	26115	Hs.410889	NM_015623	ENSG00000170921	TANC2	ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
19-PTNLD28-TUMOR_peak_31122	chr14	71103010	71103255	+	22.05377	NA	intron (NR_110071, intron 1 of 2)	LTR10A|LTR|ERV1	4883	NR_110071	101928075	Hs.737532	NR_110071	ENSG00000245466	LOC101928075	-	uncharacterized LOC101928075	ncRNA
19-PTNLD28-TUMOR_peak_34149	chr15	68238353	68238518	+	22.05377	NA	Intergenic	Intergenic	-106052	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_65859	chr22	44743072	44743292	+	22.05377	NA	Intergenic	Intergenic	-34451	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
19-PTNLD28-TUMOR_peak_83210	chr5	149939450	149939626	+	22.04692	NA	Intergenic	L1MC4a|LINE|L1	-41104	NM_001166208	11346	Hs.435228	NM_007286	HPRD:12179	SYNPO	-	synaptopodin	protein-coding
19-PTNLD28-TUMOR_peak_31772	chr14	93452705	93452920	+	22.04692	NA	intron (NM_001142593, intron 5 of 10)	intron (NM_001142593, intron 5 of 10)	63367	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_9877	chr1	209577110	209577563	+	22.03973	NA	Intergenic	Intergenic	-24832	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_44717	chr18	13501281	13501537	+	22.03973	NA	intron (NM_181482, intron 4 of 5)	intron (NM_181482, intron 4 of 5)	41463	NR_049822	100847080		NR_049822		MIR5190	-	microRNA 5190	ncRNA
19-PTNLD28-TUMOR_peak_12920	chr10	35243169	35243380	+	22.03973	NA	Intergenic	Intergenic	119984	NM_001198779	8453	Hs.82919	NM_003591	HPRD:06786	CUL2	-	cullin 2	protein-coding
19-PTNLD28-TUMOR_peak_108119	chrX	46119969	46120455	+	22.03973	NA	Intergenic	Intergenic	66897	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_14019	chr10	70992184	70992392	+	22.03973	NA	promoter-TSS (NR_120648)	promoter-TSS (NR_120648)	-42	NR_120648	101928994	Hs.562925	NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
19-PTNLD28-TUMOR_peak_73243	chr3	191756595	191756784	+	22.03578	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-199730	NR_046596	100873986	Hs.581652	NR_046596		FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87970	chr6	52647663	52647904	+	22.03578	NA	Intergenic	Intergenic	-19422	NM_000846	2939	Hs.94107	NM_000846	HPRD:00709	GSTA2	GST2|GSTA2-2|GTA2|GTH2	glutathione S-transferase alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_3754	chr1	57176415	57176636	+	22.03578	NA	3' UTR (NM_006252, exon 9 of 9)	3' UTR (NM_006252, exon 9 of 9)	65535	NM_006252	5563	Hs.437039	NM_006252	HPRD:02735	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_75694	chr4	75585059	75585281	+	22.03578	NA	Intergenic	Intergenic	104579	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_104208	chr9	86785870	86786037	+	22.03578	NA	Intergenic	Intergenic	107595	NR_110995	101927575	Hs.459826	NR_110995	ENSG00000227463	LOC101927575	-	uncharacterized LOC101927575	ncRNA
19-PTNLD28-TUMOR_peak_104028	chr9	81077583	81077820	+	22.03578	NA	Intergenic	Intergenic	165710	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_102383	chr9	19457476	19457715	+	22.03400	NA	Intergenic	Intergenic	48670	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_17984	chr11	34318081	34318277	+	22.03400	NA	intron (NM_145804, intron 1 of 16)	L2a|LINE|L2	61376	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_103668	chr9	71663971	71664346	+	22.03400	NA	intron (NM_181425, intron 2 of 4)	intron (NM_181425, intron 2 of 4)	13679	NM_001161706	2395	Hs.20685	NM_000144	HPRD:06013	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
19-PTNLD28-TUMOR_peak_8337	chr1	175307180	175307399	+	22.03400	NA	intron (NM_003285, intron 18 of 22)	intron (NM_003285, intron 18 of 22)	-145060	NM_001162894	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_60153	chr20	22319071	22319216	+	22.03400	NA	Intergenic	L1MA9|LINE|L1	-55704	NR_110615	101929663	Hs.143562	NR_110615	ENSG00000225321	LINC01427	-	long intergenic non-protein coding RNA 1427	ncRNA
19-PTNLD28-TUMOR_peak_83794	chr5	168801798	168802044	+	22.03400	NA	Intergenic	L1PA7|LINE|L1	-73788	NM_003062	6586	Hs.552087	NM_003062	HPRD:04775	SLIT3	MEGF5|SLIL2|SLIT1|Slit-3|slit2	slit homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_93568	chr7	77137671	77137797	+	22.03400	NA	Intergenic	Intergenic	-29039	NM_002835	5782	Hs.61812	NM_002835	HPRD:02513	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding
19-PTNLD28-TUMOR_peak_40490	chr17	18849787	18850195	+	22.03178	NA	Intergenic	MER21A|LTR|ERVL	-3998	NM_001282417	125206	Hs.462418	NM_152351	HPRD:15394	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 (sodium/sugar cotransporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_13964	chr10	69615420	69615619	+	22.03178	NA	Intergenic	Intergenic	-17582	NM_021800	56521	Hs.260720	NM_021800	HPRD:06930	DNAJC12	JDP1	DnaJ (Hsp40) homolog, subfamily C, member 12	protein-coding
19-PTNLD28-TUMOR_peak_4095	chr1	65089460	65089726	+	22.03178	NA	intron (NM_020925, intron 4 of 26)	intron (NM_020925, intron 4 of 26)	44063	NR_039957	100616338		NR_039957		MIR4794	-	microRNA 4794	ncRNA
19-PTNLD28-TUMOR_peak_66141	chr22	51095037	51095448	+	22.03178	NA	Intergenic	AluJb|SINE|Alu	-17828	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
19-PTNLD28-TUMOR_peak_71128	chr3	137571213	137571603	+	22.03178	NA	Intergenic	Intergenic	80655	NR_109987	100507274	Hs.360349	NR_109987		LINC01210	-	long intergenic non-protein coding RNA 1210	ncRNA
19-PTNLD28-TUMOR_peak_33906	chr15	63311749	63312045	+	22.03178	NA	Intergenic	Intergenic	-22941	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_29689	chr14	30375545	30376049	+	22.03178	NA	intron (NM_002742, intron 1 of 17)	intron (NM_002742, intron 1 of 17)	21102	NM_002742	5587	Hs.508999	NM_002742	HPRD:05668	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
19-PTNLD28-TUMOR_peak_1583	chr1	25295567	25295869	+	22.03178	NA	Intergenic	Intergenic	-4217	NM_001031680	864	Hs.170019	NM_004350	HPRD:02565	RUNX3	AML2|CBFA3|PEBP2aC	runt-related transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_15810	chr10	116759875	116760189	+	22.03178	NA	Intergenic	AluSx1|SINE|Alu	5616	NR_120677	102724589		NR_120677		LOC102724589	-	uncharacterized LOC102724589	ncRNA
19-PTNLD28-TUMOR_peak_9120	chr1	200175605	200175771	+	22.03178	NA	Intergenic	Intergenic	163735	NM_001276464	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_62511	chr20	61196004	61196248	+	22.01681	NA	Intergenic	(GGCTG)n|Simple_repeat|Simple_repeat	34007	NR_029676	406923		NR_029676		MIR133A2	MIRN133A2	microRNA 133a-2	ncRNA
19-PTNLD28-TUMOR_peak_94375	chr7	100719044	100719283	+	22.01019	NA	Intergenic	L2|LINE|L2	-9623	NM_030961	81844	Hs.521092	NM_030961	HPRD:10284	TRIM56	RNF109	tripartite motif containing 56	protein-coding
19-PTNLD28-TUMOR_peak_101071	chr8	133490969	133491123	+	21.98803	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	1958	NM_004519	3786	Hs.374023	NM_004519	HPRD:09077	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel, KQT-like subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_12571	chr10	27541388	27541930	+	21.98803	NA	promoter-TSS (NR_003525)	promoter-TSS (NR_003525)	-424	NR_003525	387646	Hs.631829	NM_001006604	HPRD:17363	LRRC37A6P	-	leucine rich repeat containing 37, member A6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31795	chr14	93650998	93651667	+	21.98803	NA	promoter-TSS (NM_001098621)	promoter-TSS (NM_001098621)	36	NM_015676	26175	Hs.275352	NM_015676	ENSG00000153485	TMEM251	C14orf109	transmembrane protein 251	protein-coding
19-PTNLD28-TUMOR_peak_67747	chr3	42889325	42889555	+	21.97541	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	28193	NM_004391	1582	Hs.447793	NM_004391	HPRD:03705	CYP8B1	CP8B|CYP12	cytochrome P450, family 8, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_46652	chr19	2385267	2385575	+	21.97541	NA	Intergenic	Intergenic	-4363	NM_182973	360200	Hs.465560	NM_182973	HPRD:07124	TMPRSS9	-	transmembrane protease, serine 9	protein-coding
19-PTNLD28-TUMOR_peak_92709	chr7	56426713	56426885	+	21.97541	NA	Intergenic	AluSz|SINE|Alu	89269	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66348	chr3	7800254	7800530	+	21.96155	NA	Intergenic	Intergenic	-223421	NR_046606	100873937	Hs.570608	NR_046606		GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97207	chr8	12082267	12082562	+	21.96085	NA	Intergenic	HERVK-int|LTR|ERVK	-30790	NM_001083537	85002	Hs.675799	NM_001083537	HPRD:17515	FAM86B1	-	family with sequence similarity 86, member B1	protein-coding
19-PTNLD28-TUMOR_peak_83472	chr5	156938706	156939045	+	21.95730	NA	intron (NM_033274, intron 8 of 22)	intron (NM_033274, intron 8 of 22)	51848	NM_001099287	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_9617	chr1	205323916	205324533	+	21.95611	NA	intron (NM_001271863, intron 2 of 8)	MIRc|SINE|MIR	1904	NM_018203	55220	Hs.10414	NM_018203	HPRD:07696	KLHDC8A	-	kelch domain containing 8A	protein-coding
19-PTNLD28-TUMOR_peak_32479	chr15	20989040	20989481	+	21.95467	NA	Intergenic	CpG	-27780	NR_027992	606	Hs.657985	NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_66255	chr3	4792147	4792332	+	21.95119	NA	intron (NR_004428, intron 1 of 1)	intron (NR_004428, intron 1 of 1)	1035	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_38428	chr16	68563718	68564090	+	21.94949	NA	Intergenic	CpG	-9757	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_16957	chr11	8273952	8274186	+	21.94949	NA	intron (NM_001270428, intron 1 of 3)	MLT1F2|LTR|ERVL-MaLR	11356	NR_073006	4004	Hs.654426	NM_002315	HPRD:01738	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
19-PTNLD28-TUMOR_peak_62287	chr20	56084828	56085002	+	21.94949	NA	intron (NM_001269048, intron 4 of 5)	intron (NM_001269048, intron 4 of 5)	15008	NM_001269041	140690	Hs.131543	NM_080618	HPRD:09512	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor (zinc finger protein)-like	protein-coding
19-PTNLD28-TUMOR_peak_58889	chr2	233561706	233562723	+	21.94949	NA	intron (NM_001103148, intron 1 of 27)	CpG	199	NM_015575	26058	Hs.565319	NM_015575	HPRD:11639	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
19-PTNLD28-TUMOR_peak_82026	chr5	129625277	129625755	+	21.94949	NA	Intergenic	Intergenic	384993	NM_175856	337876	Hs.213137	NM_175856	HPRD:16766	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_108646	chrX	69308624	69308829	+	21.94853	NA	Intergenic	Intergenic	26385	NM_207320	139562	Hs.447381	NM_207320	HPRD:13681	OTUD6A	DUBA2|HSHIN6	OTU deubiquitinase 6A	protein-coding
19-PTNLD28-TUMOR_peak_94046	chr7	95571130	95571240	+	21.94853	NA	intron (NM_001278421, intron 5 of 15)	L1PA3|LINE|L1	169367	NM_001135556	1780	Hs.440364	NM_004411	HPRD:04798	DYNC1I1	DNCI1|DNCIC1	dynein, cytoplasmic 1, intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_46355	chr18	74946878	74947214	+	21.94853	NA	Intergenic	Intergenic	-14962	NM_001480	2587	Hs.272191	NM_001480		GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_75986	chr4	83189847	83189999	+	21.94853	NA	Intergenic	Intergenic	105226	NM_031369	3184	Hs.480073	NM_002138		HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	protein-coding
19-PTNLD28-TUMOR_peak_12152	chr10	14851388	14851626	+	21.94853	NA	Intergenic	Intergenic	28476	NM_001029954	441549	Hs.559067	NM_001029954		CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_36469	chr16	15135592	15135756	+	21.94853	NA	intron (NM_173474, intron 5 of 9)	intron (NM_173474, intron 5 of 9)	14262	NM_173474	123803	Hs.592045	NM_173474	HPRD:17649	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
19-PTNLD28-TUMOR_peak_102712	chr9	33447054	33447304	+	21.94456	NA	intron (NM_004925, intron 1 of 5)	intron (NM_004925, intron 1 of 5)	452	NM_004925	360	Hs.234642	NM_004925	HPRD:08970	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
19-PTNLD28-TUMOR_peak_92631	chr7	55188532	55188887	+	21.93776	NA	intron (NM_201284, intron 1 of 15)	intron (NM_201284, intron 1 of 15)	67933	NR_047551	100507500	Hs.720489	NR_047551	ENSG00000224057	EGFR-AS1	-	EGFR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_50015	chr19	51446750	51446982	+	21.93776	NA	3' UTR (NM_012427, exon 6 of 6)	3' UTR (NM_012427, exon 6 of 6)	9478	NM_012427	25818	Hs.50915	NM_012427	HPRD:05732	KLK5	KLK-L2|KLKL2|SCTE	kallikrein-related peptidase 5	protein-coding
19-PTNLD28-TUMOR_peak_13596	chr10	51934595	51934953	+	21.93735	NA	Intergenic	Intergenic	73596	NM_019893	56624	Hs.512645	NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	protein-coding
19-PTNLD28-TUMOR_peak_52368	chr2	43108946	43109155	+	21.93735	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-89299	NM_012205	23498	Hs.368805	NM_012205	HPRD:05158	HAAO	3-HAO|HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
19-PTNLD28-TUMOR_peak_25761	chr12	98884727	98884974	+	21.93735	NA	intron (NR_038383, intron 3 of 3)	intron (NR_038383, intron 3 of 3)	12783	NR_038383	643770	Hs.129589	NR_038383	ENSG00000245017	LOC643770	-	uncharacterized LOC643770	ncRNA
19-PTNLD28-TUMOR_peak_68655	chr3	59999065	59999213	+	21.93735	NA	intron (NM_001166243, intron 6 of 9)	intron (NM_001166243, intron 6 of 9)	-963424	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_71123	chr3	137357959	137358108	+	21.93061	NA	Intergenic	L1PA2|LINE|L1	-125101	NM_004189	8403	Hs.248184	NM_004189		SOX14	SOX28	SRY (sex determining region Y)-box 14	protein-coding
19-PTNLD28-TUMOR_peak_82358	chr5	135615196	135615334	+	21.93061	NA	intron (NM_001167577, intron 2 of 10)	intron (NM_001167577, intron 2 of 10)	85899	NM_020389	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_28548	chr13	78067149	78067437	+	21.93061	NA	Intergenic	Intergenic	-42516	NM_144777	8796	Hs.534699	NM_003843	HPRD:09161	SCEL	-	sciellin	protein-coding
19-PTNLD28-TUMOR_peak_75709	chr4	76106324	76106828	+	21.93061	NA	Intergenic	L1PB1|LINE|L1	-172710	NR_033964	441025	Hs.407667	NR_033964	ENSG00000251383	LOC441025	-	uncharacterized LOC441025	ncRNA
19-PTNLD28-TUMOR_peak_23333	chr12	20068403	20068552	+	21.93061	NA	Intergenic	Intergenic	-99142	NR_040098	100506393	Hs.658356	NR_040098	ENSG00000256287	LOC100506393	-	uncharacterized LOC100506393	ncRNA
19-PTNLD28-TUMOR_peak_30122	chr14	48370837	48371126	+	21.93061	NA	Intergenic	L1PA2|LINE|L1	-106764	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_8999	chr1	193190786	193191054	+	21.93061	NA	intron (NM_024529, intron 13 of 16)	intron (NM_024529, intron 13 of 16)	-35177	NM_003783	8707	Hs.518834	NM_003783	HPRD:04313	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_103860	chr9	75733939	75734123	+	21.93061	NA	Intergenic	Intergenic	-32750	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_98843	chr8	56131736	56131982	+	21.93061	NA	intron (NM_052898, intron 1 of 2)	intron (NM_052898, intron 1 of 2)	116842	NM_052898	114786	Hs.130197	NM_052898		XKR4	XRG4	XK, Kell blood group complex subunit-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_89208	chr6	116381931	116382142	+	21.92247	NA	promoter-TSS (NM_002031)	promoter-TSS (NM_002031)	-115	NM_002031	2444	Hs.89426	NM_002031		FRK	GTK|PTK5|RAK	fyn-related Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_61022	chr20	37920068	37920255	+	21.92247	NA	Intergenic	MER57B1|LTR|ERV1	-66770	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_41152	chr17	34957816	34958015	+	21.92247	NA	promoter-TSS (NM_024864)	promoter-TSS (NM_024864)	-110	NM_024864	79922	Hs.194864	NM_024864	HPRD:08656	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_96414	chr7	151392063	151392563	+	21.92037	NA	intron (NM_001040633, intron 3 of 15)	intron (NM_001040633, intron 3 of 15)	-62969	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_85507	chr6	13615936	13616246	+	21.92037	NA	TTS (NM_012241)	TTS (NM_012241)	532	NM_016167	51406	Hs.306242	NM_016167		NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7, 27kDa	protein-coding
19-PTNLD28-TUMOR_peak_34865	chr15	82960090	82960665	+	21.91157	NA	intron (NR_102747, intron 1 of 5)	LTR10G|LTR|ERV1	15627	NR_102747	727751	Hs.546614	NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12708	chr10	30291431	30291618	+	21.90461	NA	Intergenic	Intergenic	56964	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_43671	chr17	75544464	75544900	+	21.89319	NA	intron (NR_040050, intron 1 of 1)	intron (NR_040050, intron 1 of 1)	1659	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
19-PTNLD28-TUMOR_peak_3173	chr1	46109832	46109987	+	21.89319	NA	intron (NM_021639, intron 6 of 12)	intron (NM_021639, intron 6 of 12)	2448	NR_026768	728963	Hs.675157	NR_026768		RPS15AP10	RPS15A_4_42	ribosomal protein S15a pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_79131	chr5	16916637	16916868	+	21.89319	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	19633	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_87922	chr6	51928444	51928557	+	21.88459	NA	intron (NM_138694, intron 13 of 66)	MER20|DNA|hAT-Charlie	23923	NM_170724	5314	Hs.662050	NM_138694	HPRD:05987	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
19-PTNLD28-TUMOR_peak_28313	chr13	52769649	52769929	+	21.88459	NA	Intergenic	CpG	-1187	NR_002816	100887750	Hs.553878	NR_002816	ENSG00000243406	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_35574	chr15	102519765	102519983	+	21.87800	NA	promoter-TSS (NR_051985)	promoter-TSS (NR_051985)	-578	NR_051985	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9	pseudo
19-PTNLD28-TUMOR_peak_73999	chr4	3639505	3639648	+	21.87729	NA	Intergenic	L1MEc|LINE|L1	40006	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	ncRNA
19-PTNLD28-TUMOR_peak_9171	chr1	201055147	201055321	+	21.86374	NA	intron (NM_000069, intron 7 of 43)	intron (NM_000069, intron 7 of 43)	26460	NM_000069	779	Hs.1294	NM_000069	HPRD:00248	CACNA1S	CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding
19-PTNLD28-TUMOR_peak_78307	chr4	185470304	185470514	+	21.86374	NA	Intergenic	MER61A|LTR|ERV1	-74683	NM_002199	3660	Hs.654566	NM_002199	HPRD:00962	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
19-PTNLD28-TUMOR_peak_83157	chr5	149370331	149370616	+	21.86374	NA	Intergenic	Intergenic	-9696	NM_014983	22993	Hs.719189	NM_014983	ENSG00000113716	HMGXB3	HMGX3|SMF	HMG box domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_29769	chr14	32721417	32721574	+	21.86374	NA	Intergenic	Intergenic	-49020	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_10173	chr1	221259093	221259423	+	21.86374	NA	Intergenic	Intergenic	-205776	NR_046901	100873924	Hs.645593	NR_046901		HLX-AS1	-	HLX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24636	chr12	56274967	56275200	+	21.86374	NA	Intergenic	LTR41|LTR|ERVL	-38316	NM_001272101	4327	Hs.591033	NM_002429		MMP19	MMP18|RASI-1	matrix metallopeptidase 19	protein-coding
19-PTNLD28-TUMOR_peak_50002	chr19	51326687	51327302	+	21.86175	NA	promoter-TSS (NM_002257)	promoter-TSS (NM_002257)	49	NM_002257	3816	Hs.123107	NM_002257	HPRD:01003	KLK1	KLKR|Klk6|hK1	kallikrein 1	protein-coding
19-PTNLD28-TUMOR_peak_54570	chr2	102353305	102353725	+	21.85756	NA	intron (NM_145686, intron 2 of 30)	intron (NM_145686, intron 2 of 30)	38977	NM_145687	9448	Hs.701013	NM_004834	HPRD:05235	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_824	chr1	12128024	12128292	+	21.85253	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	4724	NM_001281430	943	Hs.1314	NM_001243	HPRD:01074	TNFRSF8	CD30|D1S166E|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_101373	chr8	141074073	141074503	+	21.85105	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	-358989	NM_001282534	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_106284	chr9	131316874	131317084	+	21.84421	NA	intron (NM_001195532, intron 1 of 54)	intron (NM_001195532, intron 1 of 54)	2142	NM_003127	6709	Hs.372331	NM_003127	HPRD:01684	SPTAN1	EIEE5|NEAS|SPTA2	spectrin, alpha, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_55650	chr2	130475357	130475738	+	21.84391	NA	Intergenic	Intergenic	-205203	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_25264	chr12	71209767	71210242	+	21.84391	NA	intron (NM_002849, intron 2 of 13)	intron (NM_002849, intron 2 of 13)	-27294	NM_001207015	5801	Hs.506076	NM_002849	HPRD:04169	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase, receptor type, R	protein-coding
19-PTNLD28-TUMOR_peak_78211	chr4	183859247	183859528	+	21.84391	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-20757	NM_001012732	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_46853	chr19	5564026	5564212	+	21.84391	NA	intron (NR_027064, intron 1 of 2)	intron (NR_027064, intron 1 of 2)	3886	NR_027064	257000	Hs.515575	NM_153375	HPRD:17859	TINCR	LINC00036|NCRNA00036|PLAC2	tissue differentiation-inducing non-protein coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_61150	chr20	40897333	40897497	+	21.84391	NA	intron (NM_007050, intron 13 of 30)	intron (NM_007050, intron 13 of 30)	-416708	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_76025	chr4	84014343	84014662	+	21.84391	NA	TTS (NM_001130715)	TTS (NM_001130715)	16510	NM_001130716	51316	Hs.546392	NM_016619	HPRD:06335	PLAC8	C15|DGIC|onzin	placenta-specific 8	protein-coding
19-PTNLD28-TUMOR_peak_101058	chr8	133132710	133132892	+	21.84391	NA	TTS (NM_004519)	TTS (NM_004519)	-15289	NM_001145095	10086	Hs.285026	NM_005712	HPRD:06823	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
19-PTNLD28-TUMOR_peak_52774	chr2	53538908	53539113	+	21.84391	NA	Intergenic	LTR88b|LTR|Gypsy?	-455919	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_66581	chr3	11101278	11101445	+	21.83728	NA	Intergenic	Intergenic	-40451	NR_046647	100874090	Hs.628542	NR_046647	ENSG00000232287	SLC6A1-AS1	-	SLC6A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26598	chr12	119626733	119627067	+	21.83415	NA	intron (NM_014365, intron 2 of 2)	intron (NM_014365, intron 2 of 2)	10305	NM_014365	26353	Hs.400095	NM_014365	HPRD:06420	HSPB8	CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22	heat shock 22kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_3724	chr1	56331594	56331808	+	21.83415	NA	Intergenic	AluSx|SINE|Alu	640387	NR_039618	100616272		NR_039618	miRBase:MI0016759	MIR4422	-	microRNA 4422	ncRNA
19-PTNLD28-TUMOR_peak_28299	chr13	52480017	52480178	+	21.82666	NA	Intergenic	Intergenic	43980	NM_031290	83446	Hs.120573	NM_031290	HPRD:13158	CCDC70	-	coiled-coil domain containing 70	protein-coding
19-PTNLD28-TUMOR_peak_9939	chr1	211794789	211795045	+	21.82666	NA	Intergenic	Intergenic	-42818	NM_021194	7779	Hs.519469	NM_021194		SLC30A1	ZNT1|ZRC1	solute carrier family 30 (zinc transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_56503	chr2	159251810	159251984	+	21.82666	NA	intron (NM_138803, intron 1 of 13)	intron (NM_138803, intron 1 of 13)	61368	NM_138803	130940	Hs.668597	NM_138803	HPRD:14046	CCDC148	-	coiled-coil domain containing 148	protein-coding
19-PTNLD28-TUMOR_peak_45866	chr18	54193229	54193397	+	21.82666	NA	Intergenic	L1PA3|LINE|L1	112607	NM_004786	9352	Hs.114412	NM_004786		TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_35129	chr15	89592525	89592713	+	21.82666	NA	Intergenic	L1PA3|LINE|L1	-38762	NM_007011	11057	Hs.122337	NM_007011	HPRD:09791	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_6059	chr1	121143742	121143904	+	21.82362	NA	Intergenic	L1PA3|LINE|L1	-4058	NR_104189	100873165	Hs.568525	NR_104189		SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100592	chr8	125388811	125388958	+	21.82133	NA	Intergenic	Intergenic	-3944	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
19-PTNLD28-TUMOR_peak_2551	chr1	38398537	38398695	+	21.82133	NA	intron (NM_005540, intron 6 of 23)	intron (NM_005540, intron 6 of 23)	-1153	NM_001297434	3633	Hs.449942	NM_005540	HPRD:00924	INPP5B	5PTase	inositol polyphosphate-5-phosphatase, 75kDa	protein-coding
19-PTNLD28-TUMOR_peak_1078	chr1	16562703	16563161	+	21.81742	NA	intron (NM_030907, intron 1 of 4)	intron (NM_030907, intron 1 of 4)	727	NM_030907	79363	Hs.546430	NM_030907	HPRD:14399	RSG1	C1orf89	REM2 and RAB-like small GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_66622	chr3	11632962	11633142	+	21.80808	NA	intron (NM_001284390, intron 4 of 6)	intron (NM_001284390, intron 4 of 6)	-9187	NM_001128220	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_72842	chr3	185060616	185060831	+	21.80808	NA	intron (NM_001242317, intron 2 of 12)	MLT1E1A|LTR|ERVL-MaLR	-20113	NM_004721	9175	Hs.591306	NM_004721	HPRD:05372	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_98602	chr8	48011989	48012563	+	21.80808	NA	Intergenic	L1PA2|LINE|L1	-88654	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_60528	chr20	31380209	31380420	+	21.80808	NA	intron (NM_006892, intron 8 of 22)	intron (NM_006892, intron 8 of 22)	12656	NM_175850	1789	Hs.643024	NM_006892	HPRD:04209	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA (cytosine-5-)-methyltransferase 3 beta	protein-coding
19-PTNLD28-TUMOR_peak_6327	chr1	145556693	145557140	+	21.80033	NA	intron (NM_144698, intron 3 of 13)	intron (NM_144698, intron 3 of 13)	7707	NM_144698	148741	Hs.710624	NM_144698	HPRD:08050	ANKRD35	-	ankyrin repeat domain 35	protein-coding
19-PTNLD28-TUMOR_peak_22350	chr12	253142	253314	+	21.79787	NA	intron (NR_033859, intron 2 of 9)	intron (NR_033859, intron 2 of 9)	5104	NR_033859	574538	Hs.589138	NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
19-PTNLD28-TUMOR_peak_99282	chr8	80677523	80677763	+	21.79279	NA	exon (NM_001040708, exon 5 of 5)	exon (NM_001040708, exon 5 of 5)	1067	NM_001282851	23462	Hs.234434	NM_012258	HPRD:04260	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|OAF1|hHRT1	hes-related family bHLH transcription factor with YRPW motif 1	protein-coding
19-PTNLD28-TUMOR_peak_102001	chr9	3827288	3827481	+	21.79279	NA	3' UTR (NM_152629, exon 10 of 10)	3' UTR (NM_152629, exon 10 of 10)	-71262	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_101377	chr8	141116465	141116693	+	21.79279	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	351282	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_35191	chr15	90735080	90735294	+	21.79279	NA	intron (NM_020210, intron 1 of 14)	intron (NM_020210, intron 1 of 14)	7035	NM_020210	10509	Hs.474935	NM_020210	HPRD:10217	SEMA4B	SEMAC|SemC	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
19-PTNLD28-TUMOR_peak_13442	chr10	48336157	48336383	+	21.78865	NA	Intergenic	Intergenic	-18819	NM_153034	118738	Hs.27788	NM_153034	HPRD:15801	ZNF488	-	zinc finger protein 488	protein-coding
19-PTNLD28-TUMOR_peak_101907	chr9	676858	677024	+	21.77993	NA	5' UTR (NM_001256876, exon 6 of 16)	5' UTR (NM_001256876, exon 6 of 16)	-29865	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_46154	chr18	64179139	64179426	+	21.77993	NA	intron (NM_021153, intron 9 of 11)	intron (NM_021153, intron 9 of 11)	92093	NR_073130	28513	Hs.42771	NM_021153	HPRD:04311	CDH19	CDH7|CDH7L2	cadherin 19, type 2	protein-coding
19-PTNLD28-TUMOR_peak_72283	chr3	170477912	170478132	+	21.77993	NA	Intergenic	Intergenic	110023	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_58449	chr2	219759281	219759463	+	21.77617	NA	TTS (NM_025216)	TTS (NM_025216)	14117	NM_025216	80326	Hs.121540	NM_025216	HPRD:16207	WNT10A	OODD|SSPS|STHAG4	wingless-type MMTV integration site family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_97614	chr8	22543234	22543487	+	21.76415	NA	Intergenic	Intergenic	6542	NM_001199880	1960	Hs.534313	NM_004430	HPRD:03881	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
19-PTNLD28-TUMOR_peak_22480	chr12	2467182	2467417	+	21.76415	NA	intron (NM_001129832, intron 3 of 47)	intron (NM_001129832, intron 3 of 47)	88357	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_18752	chr11	59034054	59034291	+	21.76078	NA	Intergenic	Intergenic	-53678	NM_001039396	219972	Hs.744920	NM_001039396	ENSG00000197629	MPEG1	MPG1|MPS1|Mpg-1	macrophage expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_90254	chr6	158402509	158403142	+	21.75758	NA	promoter-TSS (NM_003898)	promoter-TSS (NM_003898)	-63	NM_003898	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_44422	chr18	7317783	7318024	+	21.75132	NA	Intergenic	Intergenic	86766	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
19-PTNLD28-TUMOR_peak_25399	chr12	77572906	77573158	+	21.75132	NA	Intergenic	L1PA2|LINE|L1	-113672	NM_203394	144455	Hs.416375	NM_203394	HPRD:10929	E2F7	-	E2F transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_68384	chr3	53174938	53175098	+	21.75132	NA	Intergenic	Intergenic	-10548	NM_052859	91869	Hs.631910	NM_052859	HPRD:15239	RFT1	CDG1N	RFT1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_950	chr1	15092338	15092660	+	21.75132	NA	intron (NM_201628, intron 1 of 14)	LTR16C|LTR|ERVL	-158126	NM_001018000	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_99681	chr8	100025404	100025777	+	21.75132	NA	promoter-TSS (NM_015243)	promoter-TSS (NM_015243)	96	NM_152564	157680	Hs.191540	NM_015243	HPRD:06379	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_26477	chr12	116959071	116959325	+	21.74838	NA	Intergenic	Intergenic	-12029	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
19-PTNLD28-TUMOR_peak_53801	chr2	85698408	85698838	+	21.73837	NA	Intergenic	AluJr|SINE|Alu	36705	NM_198482	284948	Hs.209542	NM_198482	HPRD:14156	SH2D6	-	SH2 domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_43780	chr17	76732027	76732184	+	21.73696	NA	intron (NM_004762, intron 1 of 12)	intron (NM_004762, intron 1 of 12)	-12273	NM_001292018	9267	Hs.191215	NM_004762	HPRD:01630	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
19-PTNLD28-TUMOR_peak_59650	chr20	5046689	5046928	+	21.73174	NA	Intergenic	Intergenic	46925	NM_014145	29058	Hs.472024	NM_014145	HPRD:12762	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
19-PTNLD28-TUMOR_peak_93414	chr7	75188885	75189215	+	21.73174	NA	exon (NM_001243198, exon 14 of 29)	exon (NM_001243198, exon 14 of 29)	-31597	NR_028059	5387	Hs.659871	NM_005395	HPRD:17866	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_5901	chr1	118241076	118241328	+	21.73174	NA	Intergenic	Intergenic	92598	NM_017709	54855	Hs.356216	NM_017709	HPRD:13312	FAM46C	-	family with sequence similarity 46, member C	protein-coding
19-PTNLD28-TUMOR_peak_28183	chr13	48575363	48575579	+	21.73174	NA	promoter-TSS (NM_003850)	promoter-TSS (NM_003850)	-9	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_81142	chr5	91181458	91181684	+	21.73174	NA	Intergenic	Intergenic	-502422	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_62382	chr20	57480400	57480563	+	21.72965	NA	exon (NM_080426, exon 5 of 12)	exon (NM_080426, exon 5 of 12)	14055	NM_080426	2778	Hs.125898	NM_000516	HPRD:00761	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH	GNAS complex locus	protein-coding
19-PTNLD28-TUMOR_peak_83250	chr5	150455340	150455698	+	21.72965	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	5126	NM_001252385	10318	Hs.355141	NM_006058	HPRD:09216	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_24091	chr12	49318461	49318760	+	21.72856	NA	promoter-TSS (NM_001143781)	promoter-TSS (NM_001143781)	54	NM_001143781	51303	Hs.655103	NM_016594	HPRD:11170	FKBP11	FKBP19	FK506 binding protein 11, 19 kDa	protein-coding
19-PTNLD28-TUMOR_peak_5011	chr1	94801515	94801685	+	21.72856	NA	Intergenic	Intergenic	-82333	NM_002858	5825	Hs.700576	NM_002858	HPRD:01368	ABCD3	ABC43|PMP70|PXMP1|ZWS2	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding
19-PTNLD28-TUMOR_peak_27221	chr12	131749301	131749599	+	21.72856	NA	Intergenic	L1MA10|LINE|L1	-82565	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_95670	chr7	137638602	137638797	+	21.72622	NA	intron (NM_001243523, intron 1 of 3)	intron (NM_001243523, intron 1 of 3)	605	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
19-PTNLD28-TUMOR_peak_55646	chr2	130377173	130377354	+	21.72415	NA	Intergenic	Intergenic	-303487	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_51906	chr2	29732381	29732550	+	21.72415	NA	intron (NM_004304, intron 4 of 28)	intron (NM_004304, intron 4 of 28)	394173	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_64890	chr22	27234493	27234679	+	21.72415	NA	Intergenic	Intergenic	-64669	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_44543	chr18	10374706	10374945	+	21.72415	NA	Intergenic	Intergenic	39542	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
19-PTNLD28-TUMOR_peak_25821	chr12	101636718	101637264	+	21.72415	NA	Intergenic	Intergenic	-32975	NM_145913	160728	Hs.444536	NM_145913		SLC5A8	AIT|SMCT|SMCT1	solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_45311	chr18	36030943	36031200	+	21.72415	NA	Intergenic	HAL1|LINE|L1	793973	NR_036202	100422857		NR_036202	miRBase:MI0015847	MIR4318	-	microRNA 4318	ncRNA
19-PTNLD28-TUMOR_peak_24913	chr12	62878123	62878326	+	21.72415	NA	intron (NM_001278469, intron 2 of 35)	intron (NM_001278469, intron 2 of 35)	17627	NM_001278469	23041	Hs.389378	NM_015026	HPRD:11123	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_73845	chr4	1605900	1606085	+	21.71644	NA	Intergenic	Intergenic	79726	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_77209	chr4	140586786	140587002	+	21.71644	NA	promoter-TSS (NM_001204368)	promoter-TSS (NM_001204368)	-28	NM_001204368	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_95294	chr7	130404418	130404748	+	21.69797	NA	Intergenic	L2a|LINE|L2	14277	NM_138693	136259	Hs.125240	NM_138693	HPRD:13919	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
19-PTNLD28-TUMOR_peak_49389	chr19	45927602	45927864	+	21.69758	NA	promoter-TSS (NM_202001)	promoter-TSS (NM_202001)	-556	NM_001166049	2067	Hs.435981	NM_001983	HPRD:00533	ERCC1	COFS4|RAD10|UV20	excision repair cross-complementation group 1	protein-coding
19-PTNLD28-TUMOR_peak_44724	chr18	13797119	13797536	+	21.69668	NA	Intergenic	Intergenic	-28216	NM_005913	4161	Hs.248145	NM_005913	HPRD:08965	MC5R	MC2	melanocortin 5 receptor	protein-coding
19-PTNLD28-TUMOR_peak_81217	chr5	95116851	95117001	+	21.69668	NA	intron (NM_014899, intron 9 of 11)	intron (NM_014899, intron 9 of 11)	41651	NM_001243659	2745	Hs.28988	NM_002064	HPRD:02707	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_50544	chr19	58533407	58533578	+	21.69668	NA	Intergenic	Intergenic	-11942	NM_182572	284312	Hs.643437	NM_182572	HPRD:15897	ZSCAN1	MZF-1|ZNF915	zinc finger and SCAN domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_54417	chr2	99307883	99308077	+	21.69668	NA	intron (NM_012214, intron 2 of 15)	Tigger3b|DNA|TcMar-Tigger	-28044	NM_001160154	11320	Hs.177576	NM_012214	HPRD:06860	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	protein-coding
19-PTNLD28-TUMOR_peak_64847	chr22	25921889	25922078	+	21.69668	NA	Intergenic	LTR26|LTR|ERV1	-38878	NM_005160	157	Hs.657494	NM_005160	HPRD:00183	ADRBK2	BARK2|GRK3	adrenergic, beta, receptor kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_45511	chr18	44049476	44049808	+	21.69668	NA	Intergenic	Intergenic	49407	NM_001173129	125336	Hs.345877	NM_144612	HPRD:08316	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_98006	chr8	29952757	29953096	+	21.69484	NA	promoter-TSS (NM_001128208)	promoter-TSS (NM_001128208)	4	NM_015344	23484	Hs.146585	NM_015344	HPRD:09551	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript-like 1	protein-coding
19-PTNLD28-TUMOR_peak_83247	chr5	150439567	150439716	+	21.69484	NA	intron (NM_001258454, intron 5 of 17)	intron (NM_001258454, intron 5 of 17)	5051	NM_001258456	10318	Hs.355141	NM_006058	HPRD:09216	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_39722	chr17	2795936	2796187	+	21.68435	NA	intron (NM_015085, intron 2 of 24)	MLT1G|LTR|ERVL-MaLR	73128	NR_110818	101927911	Hs.626373	NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
19-PTNLD28-TUMOR_peak_103349	chr9	46178881	46179045	+	21.67098	NA	Intergenic	MER115|DNA|hAT-Tip100	62020	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_12324	chr10	21661951	21662162	+	21.67098	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	123514	NR_031736	100302129		NR_031736		MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
19-PTNLD28-TUMOR_peak_73004	chr3	187086927	187087182	+	21.67098	NA	intron (NM_022147, intron 1 of 1)	intron (NM_022147, intron 1 of 1)	886	NM_022147	64108	Hs.43388	NM_022147		RTP4	IFRG28|Z3CXXC4	receptor (chemosensory) transporter protein 4	protein-coding
19-PTNLD28-TUMOR_peak_80386	chr5	67557699	67557911	+	21.67098	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-26447	NM_181524	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_57376	chr2	187435361	187435712	+	21.66789	NA	Intergenic	AluJb|SINE|Alu	-19254	NM_002210	3685	Hs.436873	NM_002210	HPRD:01903	ITGAV	CD51|MSK8|VNRA|VTNR	integrin, alpha V	protein-coding
19-PTNLD28-TUMOR_peak_74929	chr4	37649813	37650051	+	21.65984	NA	intron (NM_001085400, intron 2 of 6)	intron (NM_001085400, intron 2 of 6)	38067	NM_001085399	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT-like 1	protein-coding
19-PTNLD28-TUMOR_peak_85011	chr6	4835918	4836052	+	21.65984	NA	promoter-TSS (NM_001143970)	promoter-TSS (NM_001143970)	-347	NM_001143970	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_59197	chr2	240530867	240531185	+	21.65656	NA	Intergenic	Intergenic	-153528	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_8040	chr1	168204583	168204722	+	21.65656	NA	intron (NM_199344, intron 4 of 7)	intron (NM_199344, intron 4 of 7)	9397	NM_199344	375035	Hs.645435	NM_199344		SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_42058	chr17	46599605	46599830	+	21.65656	NA	Intergenic	Intergenic	8555	NM_002144	3211	Hs.99992	NM_002144		HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
19-PTNLD28-TUMOR_peak_96463	chr7	152148529	152148713	+	21.65656	NA	Intergenic	AluYc|SINE|Alu	-12588	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
19-PTNLD28-TUMOR_peak_84860	chr6	3126711	3126882	+	21.65656	NA	intron (NR_026648, intron 3 of 8)	intron (NR_026648, intron 3 of 8)	7870	NM_004332	670	Hs.10136	NM_004332	HPRD:04403	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase-like (serine hydrolase)	protein-coding
19-PTNLD28-TUMOR_peak_31231	chr14	74058792	74059139	+	21.65656	NA	exon (NM_152331, exon 1 of 3)	exon (NM_152331, exon 1 of 3)	555	NM_152331	122970	Hs.49433	NM_152331		ACOT4	PTE-Ib|PTE1B|PTE2B	acyl-CoA thioesterase 4	protein-coding
19-PTNLD28-TUMOR_peak_104802	chr9	99093626	99093815	+	21.65656	NA	intron (NM_001286990, intron 6 of 8)	LTR59|LTR|ERV1	-29286	NM_000197	3293	Hs.477	NM_000197	HPRD:05716	HSD17B3	EDH17B3|SDR12C2	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding
19-PTNLD28-TUMOR_peak_6688	chr1	150521160	150521669	+	21.65006	NA	promoter-TSS (NM_019032)	promoter-TSS (NM_019032)	-431	NM_001288608	54507	Hs.516243	NM_019032	HPRD:08583	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS-like 4	protein-coding
19-PTNLD28-TUMOR_peak_70528	chr3	126877775	126877973	+	21.63920	NA	Intergenic	Intergenic	-34100	NM_001007534	285311	Hs.591284	NM_001007534	HPRD:16949	C3orf56	-	chromosome 3 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_5055	chr1	95439872	95440033	+	21.63920	NA	Intergenic	Intergenic	46368	NR_033998	729970	Hs.297988	NR_033998	ENSG00000235501	LOC729970	-	hCG2028352-like	ncRNA
19-PTNLD28-TUMOR_peak_60568	chr20	32021326	32021499	+	21.62559	NA	intron (NM_003098, intron 2 of 7)	intron (NM_003098, intron 2 of 7)	10286	NM_003098	6640	Hs.31121	NM_003098	HPRD:03009	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_27312	chr12	133532866	133533125	+	21.62559	NA	promoter-TSS (NM_001164715)	promoter-TSS (NM_001164715)	-103	NM_001164715	100289635	Hs.29698	NM_183238	ENSG00000196458	ZNF605	-	zinc finger protein 605	protein-coding
19-PTNLD28-TUMOR_peak_44267	chr18	2222924	2223114	+	21.62559	NA	Intergenic	L1ME3B|LINE|L1	348470	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_55201	chr2	118407167	118407328	+	21.62241	NA	Intergenic	L1PA3|LINE|L1	-165008	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_13248	chr10	44493591	44494001	+	21.62241	NA	Intergenic	Intergenic	89044	NR_033846	283033	Hs.730228	NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
19-PTNLD28-TUMOR_peak_67262	chr3	26825010	26825184	+	21.62241	NA	Intergenic	L1PA3|LINE|L1	160797	NM_052953	116135	Hs.517868	NM_052953	HPRD:14318	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_30435	chr14	55688778	55689000	+	21.62241	NA	Intergenic	Intergenic	-30493	NM_014750	9787	Hs.77695	NM_014750	HPRD:06490	DLGAP5	DLG7|HURP	discs, large (Drosophila) homolog-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_10407	chr1	225061334	225061510	+	21.62241	NA	Intergenic	Intergenic	-55934	NM_001145154	127602	Hs.133977	NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein, axonemal, heavy chain 14	protein-coding
19-PTNLD28-TUMOR_peak_59788	chr20	10579549	10579754	+	21.62241	NA	intron (NM_001009608, intron 5 of 7)	intron (NM_001009608, intron 5 of 7)	50692	NR_106930	102465525		NR_106930		MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
19-PTNLD28-TUMOR_peak_68753	chr3	63979379	63979732	+	21.62241	NA	intron (NM_001128149, intron 7 of 8)	MER5A1|DNA|hAT-Charlie	-10143	NR_038286	100507062	Hs.152536	NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_94879	chr7	113159647	113159924	+	21.62241	NA	Intergenic	LTR71A|LTR|ERV1	399297	NM_002711	5506	Hs.458309	NM_002711	HPRD:02950	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1, regulatory subunit 3A	protein-coding
19-PTNLD28-TUMOR_peak_67113	chr3	22784669	22784818	+	21.62241	NA	Intergenic	L1PA3|LINE|L1	-460041	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_97292	chr8	16528039	16528249	+	21.61454	NA	Intergenic	L1PA2|LINE|L1	331530	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_78320	chr4	185685875	185686080	+	21.61454	NA	intron (NM_001286711, intron 14 of 19)	intron (NM_001286711, intron 14 of 19)	-30691	NM_024629	79682	Hs.575032	NM_024629	HPRD:14722	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
19-PTNLD28-TUMOR_peak_94591	chr7	102988018	102988326	+	21.60863	NA	exon (NM_002803, exon 1 of 12)	exon (NM_002803, exon 1 of 12)	201	NM_001204453	5701	Hs.437366	NM_002803	HPRD:01105	PSMC2	MSS1|Nbla10058|S7	proteasome (prosome, macropain) 26S subunit, ATPase, 2	protein-coding
19-PTNLD28-TUMOR_peak_45602	chr18	45833281	45833452	+	21.60134	NA	Intergenic	Intergenic	-169686	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_12753	chr10	30931969	30932278	+	21.59424	NA	Intergenic	Intergenic	-13476	NM_183058	119180	Hs.522610	NM_183058	HPRD:14337	LYZL2	-	lysozyme-like 2	protein-coding
19-PTNLD28-TUMOR_peak_79963	chr5	55619455	55619629	+	21.58144	NA	Intergenic	MIR|SINE|MIR	-90356	NM_024669	79722	Hs.436214	NM_024669	HPRD:07758	ANKRD55	-	ankyrin repeat domain 55	protein-coding
19-PTNLD28-TUMOR_peak_1214	chr1	19577990	19578305	+	21.58144	NA	promoter-TSS (NM_015047)	promoter-TSS (NM_015047)	72	NM_016183	51154	Hs.463797	NM_016183	HPRD:12725	MRTO4	C1orf33|MRT4|dJ657E11.4	mRNA turnover 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_76415	chr4	102876210	102876350	+	21.58144	NA	intron (NM_001127507, intron 6 of 15)	intron (NM_001127507, intron 6 of 15)	141297	NM_001083907	55024	Hs.480400	NM_017935	HPRD:09819	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_43686	chr17	75818742	75819072	+	21.58144	NA	Intergenic	Intergenic	61262	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	ncRNA
19-PTNLD28-TUMOR_peak_5300	chr1	108668223	108668404	+	21.58144	NA	Intergenic	Intergenic	67118	NM_213651	29957	Hs.656870	NM_013386	HPRD:12290	SLC25A24	APC1|SCAMC-1	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	protein-coding
19-PTNLD28-TUMOR_peak_3326	chr1	48020675	48020876	+	21.58123	NA	Intergenic	Intergenic	119086	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_45465	chr18	43419482	43419694	+	21.58051	NA	intron (NM_213602, intron 4 of 5)	L2c|LINE|L2	14043	NM_213602	284266	Hs.287692	NM_213602	HPRD:13011	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig-like lectin 15	protein-coding
19-PTNLD28-TUMOR_peak_34129	chr15	67467216	67467693	+	21.58051	NA	intron (NM_005902, intron 5 of 8)	intron (NM_005902, intron 5 of 8)	8961	NM_001145104	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_6021	chr1	120685407	120685773	+	21.57737	NA	Intergenic	Intergenic	-73273	NM_024408	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_96490	chr7	152520525	152520737	+	21.57631	NA	intron (NR_073000, intron 7 of 10)	intron (NR_073000, intron 7 of 10)	63797	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_39087	chr16	84403689	84404160	+	21.57631	NA	intron (NM_014861, intron 1 of 26)	intron (NM_014861, intron 1 of 26)	1795	NM_001286527	9914	Hs.6168	NM_014861	HPRD:13812	ATP2C2	SPCA2	ATPase, Ca++ transporting, type 2C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_97635	chr8	22766592	22766764	+	21.56926	NA	intron (NM_144962, intron 3 of 6)	intron (NM_144962, intron 3 of 6)	18743	NM_144962	157310	Hs.491242	NM_144962	HPRD:11424	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine-binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_14440	chr10	78343439	78343651	+	21.56926	NA	Intergenic	HAL1b|LINE|L1	-304257	NR_120655	101929328	Hs.664552	NR_120655		KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61198	chr20	42449614	42449896	+	21.56926	NA	Intergenic	Intergenic	-93737	NM_001098797	84969	Hs.26608	NM_032883	HPRD:12734	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
19-PTNLD28-TUMOR_peak_78186	chr4	183413663	183413945	+	21.56926	NA	intron (NM_001080477, intron 2 of 26)	intron (NM_001080477, intron 2 of 26)	168667	NM_001080477	55714	Hs.130438	NM_001080477	ENSG00000218336	TENM3	MCOPCB9|ODZ3|TNM3|Ten-m3	teneurin transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_14695	chr10	86884327	86884692	+	21.56926	NA	Intergenic	Intergenic	74152	NR_120668	101929624	Hs.588831	NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
19-PTNLD28-TUMOR_peak_100954	chr8	131161677	131161858	+	21.56926	NA	intron (NM_018482, intron 13 of 29)	intron (NM_018482, intron 13 of 29)	-64753	NR_045385	100507117	Hs.106015	NR_045385		ASAP1-IT2	-	ASAP1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_29358	chr14	21289792	21290128	+	21.56926	NA	Intergenic	LTR8|LTR|ERV1	-18924	NM_198234	6035	Hs.78224	NM_002933	HPRD:01591	RNASE1	RAC1|RIB1|RNS1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_12138	chr10	14518846	14519166	+	21.56926	NA	Intergenic	Intergenic	40431	NR_031668	100302116		NR_031668	miRBase:MI0006401	MIR1265	MIRN1265|hsa-mir-1265	microRNA 1265	ncRNA
19-PTNLD28-TUMOR_peak_82911	chr5	143301154	143301447	+	21.56926	NA	Intergenic	Intergenic	109574	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_86744	chr6	32572393	32572569	+	21.56926	NA	Intergenic	Intergenic	-14868	NM_002124	3123	Hs.534322	NM_002124	HPRD:08349	HLA-DRB1	DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
19-PTNLD28-TUMOR_peak_69122	chr3	75343399	75343719	+	21.56926	NA	Intergenic	Intergenic	79932	NR_039646	100616394		NR_039646	miRBase:MI0016787	MIR4444-1	MIR4444|hsa-mir-4444-1	microRNA 4444-1	ncRNA
19-PTNLD28-TUMOR_peak_70278	chr3	123936510	123936675	+	21.56926	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	84816	NR_049798	100847021		NR_049798		MIR5002	-	microRNA 5002	ncRNA
19-PTNLD28-TUMOR_peak_101636	chr8	144630021	144630177	+	21.56448	NA	Intergenic	AluY|SINE|Alu	-5458	NM_001166237	79792	Hs.118983	NM_024736	HPRD:11014	GSDMD	DF5L|DFNA5L|GSDMDC1	gasdermin D	protein-coding
19-PTNLD28-TUMOR_peak_22753	chr12	6485868	6486061	+	21.56214	NA	intron (NM_001270987, intron 1 of 9)	intron (NM_001270987, intron 1 of 9)	559	NM_001159575	6337	Hs.591047	NM_001038	HPRD:02575	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel, non-voltage-gated 1 alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_61715	chr20	48334313	48334514	+	21.56174	NA	Intergenic	L2c|LINE|L2	-3992	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_34891	chr15	83223176	83223424	+	21.55725	NA	intron (NM_001288820, intron 3 of 9)	intron (NM_001288820, intron 3 of 9)	-14005	NR_111944	6218	Hs.433427	NM_001021	HPRD:01600	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17	ribosomal protein S17	protein-coding
19-PTNLD28-TUMOR_peak_103206	chr9	42243035	42243253	+	21.55725	NA	Intergenic	AluJb|SINE|Alu	-125159	NM_001012421	441430	Hs.632663	NM_001012421	HPRD:18652	ANKRD20A2	-	ankyrin repeat domain 20 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_53770	chr2	85488055	85488245	+	21.54853	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	67269	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_62569	chr20	61880625	61880814	+	21.54853	NA	intron (NM_152864, intron 2 of 6)	MER58A|DNA|hAT-Charlie	-4611	NR_024389	100192386	Hs.111539	NR_024389		FLJ16779	-	uncharacterized LOC100192386	ncRNA
19-PTNLD28-TUMOR_peak_96005	chr7	142636791	142636961	+	21.54310	NA	intron (NM_178829, intron 1 of 1)	intron (NM_178829, intron 1 of 1)	273	NM_178829	135927	Hs.239676	NM_178829	HPRD:12922	C7orf34	ctm-1	chromosome 7 open reading frame 34	protein-coding
19-PTNLD28-TUMOR_peak_31506	chr14	81440774	81441004	+	21.53808	NA	intron (NM_001018036, intron 1 of 8)	intron (NM_001018036, intron 1 of 8)	19020	NM_000369	7253	Hs.160411	NM_000369	HPRD:04537	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_65603	chr22	40100422	40100665	+	21.53808	NA	Intergenic	Intergenic	133785	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_20927	chr11	104915981	104916199	+	21.53808	NA	promoter-TSS (NM_052889)	promoter-TSS (NM_052889)	-39	NM_052889	114769	Hs.348365	NM_052889	HPRD:16740	CARD16	COP|COP1|PSEUDO-ICE	caspase recruitment domain family, member 16	protein-coding
19-PTNLD28-TUMOR_peak_35969	chr16	4263765	4264057	+	21.53605	NA	intron (NM_001098814, intron 1 of 5)	MIRc|SINE|MIR	28170	NM_001098814	6345	Hs.10041	NM_001098814	ENSG00000185739	SRL	-	sarcalumenin	protein-coding
19-PTNLD28-TUMOR_peak_24081	chr12	49208485	49209007	+	21.53376	NA	promoter-TSS (NM_001206916)	promoter-TSS (NM_001206916)	531	NM_001206917	784	Hs.250712	NM_000725	HPRD:11879	CACNB3	CAB3|CACNLB3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_103412	chr9	65981060	65981190	+	21.53269	NA	Intergenic	Intergenic	-471515	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_32626	chr15	25714601	25714876	+	21.53269	NA	Intergenic	Intergenic	-30563	NM_130839	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_102831	chr9	35051425	35051623	+	21.53269	NA	Intergenic	Intergenic	9055	NM_001287391	138724	Hs.148250	NM_203299	HPRD:14616	C9orf131	-	chromosome 9 open reading frame 131	protein-coding
19-PTNLD28-TUMOR_peak_83176	chr5	149590910	149591135	+	21.53269	NA	TTS (NM_014228)	TTS (NM_014228)	21502	NM_014228	6534	Hs.241597	NM_014228	HPRD:09371	SLC6A7	PROT	solute carrier family 6 (neurotransmitter transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_64217	chr22	17831297	17831498	+	21.53269	NA	Intergenic	L3|LINE|CR1	-9442	NM_001290046	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	cat eye syndrome chromosome region, candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_25718	chr12	97283450	97283614	+	21.53269	NA	Intergenic	Intergenic	-17469	NM_001135177	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_5306	chr1	108782162	108782340	+	21.52419	NA	intron (NM_001143989, intron 5 of 14)	intron (NM_001143989, intron 5 of 14)	4452	NM_001143989	148545	Hs.511849	NM_152488	HPRD:08144	NBPF4	-	neuroblastoma breakpoint family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_85939	chr6	24035333	24035765	+	21.52221	NA	Intergenic	LTR18B|LTR|ERVL	-90865	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_34942	chr15	84512360	84512571	+	21.52221	NA	intron (NM_001301110, intron 7 of 29)	intron (NM_001301110, intron 7 of 29)	189627	NM_001301110	57188	Hs.459162	NM_207517	HPRD:12426	ADAMTSL3	ADAMTSL-3	ADAMTS-like 3	protein-coding
19-PTNLD28-TUMOR_peak_59025	chr2	236688173	236688348	+	21.52221	NA	intron (NM_001037131, intron 6 of 17)	intron (NM_001037131, intron 6 of 17)	285527	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_72068	chr3	159590251	159590480	+	21.52221	NA	intron (NM_014575, intron 3 of 7)	intron (NM_014575, intron 3 of 7)	32715	NM_001197109	29970	Hs.134665	NM_014575	HPRD:15302	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21408	chr11	116952133	116952325	+	21.52221	NA	intron (NM_025164, intron 1 of 23)	AluY|SINE|Alu	16902	NM_025164	23387	Hs.167451	NM_025164	HPRD:11121	SIK3	QSK|SIK-3	SIK family kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_44477	chr18	9068456	9068707	+	21.50715	NA	Intergenic	Intergenic	-34047	NM_021074	4729	Hs.464572	NM_021074	HPRD:02757	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_19996	chr11	74041579	74041823	+	21.50715	NA	3' UTR (NM_173582, exon 14 of 14)	3' UTR (NM_173582, exon 14 of 14)	-18980	NM_001288748	283208	Hs.660541	NM_182904	HPRD:16413	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
19-PTNLD28-TUMOR_peak_51933	chr2	30388007	30388231	+	21.50376	NA	Intergenic	Intergenic	18369	NM_016061	51646	Hs.515890	NM_016061	HPRD:18312	YPEL5	-	yippee-like 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_71212	chr3	139018343	139018624	+	21.50376	NA	Intergenic	Intergenic	-44378	NM_020191	56945	Hs.745001	NM_020191	HPRD:10430	MRPS22	C3orf5|COXPD5|GIBT|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
19-PTNLD28-TUMOR_peak_48405	chr19	29950624	29950788	+	21.50376	NA	intron (NR_040029, intron 1 of 9)	L1PA2|LINE|L1	65953	NR_040029	284395	Hs.631601	NR_040029	ENSG00000264515	LOC284395	-	uncharacterized LOC284395	ncRNA
19-PTNLD28-TUMOR_peak_98252	chr8	38261707	38261875	+	21.50376	NA	intron (NM_001286819, intron 7 of 10)	intron (NM_001286819, intron 7 of 10)	17142	NM_001199660	137994	Hs.696457	NM_144652	HPRD:08060	LETM2	-	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_36797	chr16	22542157	22542320	+	21.50111	NA	intron (NM_001135865, intron 4 of 6)	intron (NM_001135865, intron 4 of 6)	-14781	NR_003676	653786	Hs.564945	NR_003676	ENSG00000257838	LOC653786	-	otoancorin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_42167	chr17	47965127	47965439	+	21.49594	NA	Intergenic	Intergenic	-39904	NM_001077504	255061	Hs.652130	NM_170685	HPRD:09701	TAC4	EK|HK-1|HK1|PPT-C	tachykinin 4 (hemokinin)	protein-coding
19-PTNLD28-TUMOR_peak_103570	chr9	69481416	69481635	+	21.49256	NA	Intergenic	LTR46|LTR|ERV1	99544	NM_001098805	728747	Hs.645502	NM_001098805	ENSG00000172014	ANKRD20A4	-	ankyrin repeat domain 20 family, member A4	protein-coding
19-PTNLD28-TUMOR_peak_38126	chr16	58447294	58447431	+	21.48915	NA	Intergenic	Intergenic	21064	NM_022770	64785	Hs.47125	NM_022770	HPRD:07842	GINS3	PSF3	GINS complex subunit 3 (Psf3 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_58742	chr2	230272003	230272277	+	21.48915	NA	intron (NM_139072, intron 9 of 12)	intron (NM_139072, intron 9 of 12)	-136083	NM_001100818	55022	Hs.745038	NM_017933	HPRD:07944	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80254	chr5	64236065	64236368	+	21.48915	NA	intron (NM_005869, intron 11 of 13)	L1PA7|LINE|L1	171471	NM_001297644	10283	Hs.371372	NM_005869	HPRD:11541	CWC27	NY-CO-10|SDCCAG10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_31793	chr14	93640296	93640817	+	21.48915	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	10693	NM_022151	64112	Hs.24719	NM_022151	HPRD:17580	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
19-PTNLD28-TUMOR_peak_40464	chr17	18335608	18335796	+	21.48100	NA	Intergenic	Intergenic	-7520	NR_073414	729252	Hs.585811	NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40742	chr17	25879508	25879709	+	21.47944	NA	intron (NM_014238, intron 3 of 20)	intron (NM_014238, intron 3 of 20)	-78566	NR_024043	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	lectin, galactoside-binding, soluble, 9	protein-coding
19-PTNLD28-TUMOR_peak_25275	chr12	71512286	71512444	+	21.47944	NA	Intergenic	L1PA2|LINE|L1	39414	NM_004616	7103	Hs.170563	NM_004616	HPRD:02865	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
19-PTNLD28-TUMOR_peak_80372	chr5	67185853	67186046	+	21.47944	NA	Intergenic	L1PA2|LINE|L1	-299755	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_52231	chr2	38770060	38770321	+	21.47944	NA	Intergenic	MER4C|LTR|ERV1	-27308	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
19-PTNLD28-TUMOR_peak_99545	chr8	95323070	95323541	+	21.47944	NA	Intergenic	Intergenic	-48758	NM_005261	2669	Hs.654463	NM_005261	HPRD:11553	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding
19-PTNLD28-TUMOR_peak_20639	chr11	94474637	94474803	+	21.47664	NA	Intergenic	Intergenic	-26788	NM_001301007	154810	Hs.503594	NM_130847	HPRD:12451	AMOTL1	JEAP	angiomotin like 1	protein-coding
19-PTNLD28-TUMOR_peak_90950	chr7	2797875	2798150	+	21.47664	NA	intron (NM_007353, intron 2 of 3)	Charlie1|DNA|hAT-Charlie	4762	NM_001282440	2768	Hs.487341	NM_007353	HPRD:05093	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
19-PTNLD28-TUMOR_peak_101837	chr8	146275637	146275921	+	21.47584	NA	Intergenic	LTR43|LTR|ERV1	-2045	NM_023080	65265	Hs.169615	NM_023080	HPRD:07951	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_94213	chr7	99069313	99069509	+	21.46937	NA	Intergenic	AluSx1|SINE|Alu	-1104	NM_001013258	285989	Hs.440384	NM_213603	HPRD:14161	ZNF789	-	zinc finger protein 789	protein-coding
19-PTNLD28-TUMOR_peak_28791	chr13	99136659	99136959	+	21.46565	NA	intron (NM_001032296, intron 2 of 10)	intron (NM_001032296, intron 2 of 10)	37570	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_16577	chr11	1552761	1553081	+	21.46408	NA	Intergenic	Intergenic	40229	NM_004420	1850	Hs.41688	NM_004420	HPRD:03617	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
19-PTNLD28-TUMOR_peak_64508	chr22	21363954	21364179	+	21.46408	NA	non-coding (NR_027051, exon 2 of 2)	non-coding (NR_027051, exon 2 of 2)	4510	NR_003608	113691	Hs.585006	NR_003608	HPRD:17517	TUBA3FP	-	tubulin, alpha 3f, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_17462	chr11	17408181	17408398	+	21.45899	NA	3' UTR (NM_001166290, exon 2 of 2)	3' UTR (NM_001166290, exon 2 of 2)	1917	NM_000525	3767	Hs.248141	NM_000525	HPRD:09022	KCNJ11	BIR|HHF2|IKATP|KIR6.2|PHHI|TNDM3	potassium inwardly-rectifying channel, subfamily J, member 11	protein-coding
19-PTNLD28-TUMOR_peak_39152	chr16	85182668	85182863	+	21.45331	NA	non-coding (NR_033984, exon 3 of 3)	non-coding (NR_033984, exon 3 of 3)	12009	NR_033984	400548	Hs.592054	NR_033984		LOC400548	-	uncharacterized LOC400548	ncRNA
19-PTNLD28-TUMOR_peak_87112	chr6	36624313	36624479	+	21.45331	NA	Intergenic	MER21C|LTR|ERVL	18507	NR_109836	101154753	Hs.741557	NR_109836		PANDAR	PANDA	promoter of CDKN1A antisense DNA damage activated RNA	ncRNA
19-PTNLD28-TUMOR_peak_68144	chr3	49675923	49676125	+	21.45170	NA	intron (NM_003458, intron 2 of 11)	intron (NM_003458, intron 2 of 11)	-35411	NM_001640	327	Hs.517969	NM_001640	HPRD:00034	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_97480	chr8	20699749	20699996	+	21.45170	NA	Intergenic	Intergenic	-131625	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	ncRNA
19-PTNLD28-TUMOR_peak_75777	chr4	77532851	77533044	+	21.45170	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	38226	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_26931	chr12	124247749	124247921	+	21.44201	NA	intron (NM_207437, intron 1 of 77)	intron (NM_207437, intron 1 of 77)	793	NM_207437	196385	Hs.622654	NM_207437	HPRD:13473	DNAH10	-	dynein, axonemal, heavy chain 10	protein-coding
19-PTNLD28-TUMOR_peak_96790	chr7	158808124	158808379	+	21.43892	NA	intron (NR_024394, intron 1 of 4)	intron (NR_024394, intron 1 of 4)	7206	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
19-PTNLD28-TUMOR_peak_86735	chr6	32430381	32430730	+	21.43337	NA	Intergenic	THE1B|LTR|ERVL-MaLR	22936	NM_019111	3122	Hs.520048	NM_019111	HPRD:00833	HLA-DRA	HLA-DRA1|MLRW	major histocompatibility complex, class II, DR alpha	protein-coding
19-PTNLD28-TUMOR_peak_52132	chr2	37179886	37180364	+	21.43337	NA	intron (NM_003162, intron 1 of 17)	intron (NM_003162, intron 1 of 17)	13490	NM_003162	6801	Hs.127486	NM_003162	HPRD:18124	STRN	SG2NA	striatin, calmodulin binding protein	protein-coding
19-PTNLD28-TUMOR_peak_88777	chr6	91183337	91183493	+	21.43337	NA	Intergenic	Intergenic	113605	NM_145333	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_104199	chr9	86571456	86571745	+	21.43244	NA	promoter-TSS (NM_032307)	promoter-TSS (NM_032307)	63	NM_032307	84267	Hs.208914	NM_032307	HPRD:12969	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_23856	chr12	43352198	43352511	+	21.42936	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-312054	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_100970	chr8	131370299	131370554	+	21.42936	NA	intron (NM_018482, intron 2 of 29)	CpG-26004	-61647	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_25641	chr12	95189389	95189573	+	21.42283	NA	Intergenic	Intergenic	-38693	NR_030171	574449		NR_030171	miRBase:MI0003131	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
19-PTNLD28-TUMOR_peak_105785	chr9	122731462	122731633	+	21.42283	NA	Intergenic	Intergenic	275781	NR_029604	406939		NR_029604	miRBase:MI0000262	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
19-PTNLD28-TUMOR_peak_15825	chr10	117840136	117840403	+	21.42283	NA	intron (NM_145793, intron 7 of 8)	MER21C|LTR|ERVL	191550	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_23769	chr12	38956838	38957161	+	21.42283	NA	Intergenic	L3|LINE|CR1	246442	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_12703	chr10	30269139	30269282	+	21.42283	NA	Intergenic	MER6A|DNA|TcMar-Tigger	79278	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_27500	chr13	24922952	24923185	+	21.42158	NA	Intergenic	ERVL-B4-int|LTR|ERVL	39352	NM_178540	338872	Hs.362854	NM_178540	HPRD:14659	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
19-PTNLD28-TUMOR_peak_65486	chr22	38624843	38625145	+	21.42158	NA	intron (NM_012264, intron 5 of 8)	intron (NM_012264, intron 5 of 8)	25967	NM_001161573	23764	Hs.517617	NM_012323	HPRD:05343	MAFF	U-MAF|hMafF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F	protein-coding
19-PTNLD28-TUMOR_peak_82641	chr5	139968897	139969032	+	21.42158	NA	Intergenic	Intergenic	24544	NM_080670	113829	Hs.406840	NM_080670	HPRD:11574	SLC35A4	-	solute carrier family 35, member A4	protein-coding
19-PTNLD28-TUMOR_peak_62342	chr20	56724857	56725062	+	21.42158	NA	Intergenic	Intergenic	-1024	NM_178456	128602	Hs.43977	NM_178456	HPRD:12787	C20orf85	LLC1|bA196N14.1	chromosome 20 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_29696	chr14	30832767	30833279	+	21.42158	NA	Intergenic	L1PA2|LINE|L1	-195306	NM_017769	55632	Hs.509008	NM_017769	HPRD:13851	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_966	chr1	15341106	15341331	+	21.42158	NA	intron (NM_001017999, intron 2 of 7)	intron (NM_001017999, intron 2 of 7)	68803	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_6159	chr1	143991112	143991282	+	21.41615	NA	Intergenic	Intergenic	-78037	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_15255	chr10	102790880	102791086	+	21.41615	NA	promoter-TSS (NM_030971)	promoter-TSS (NM_030971)	-13	NM_030971	81855	Hs.283844	NM_030971	HPRD:15329	SFXN3	BA108L7.2|SFX3	sideroflexin 3	protein-coding
19-PTNLD28-TUMOR_peak_20647	chr11	94523921	94524268	+	21.41326	NA	intron (NM_001301007, intron 1 of 11)	intron (NM_001301007, intron 1 of 11)	22586	NM_130847	154810	Hs.503594	NM_130847	HPRD:12451	AMOTL1	JEAP	angiomotin like 1	protein-coding
19-PTNLD28-TUMOR_peak_6206	chr1	144546087	144546230	+	21.41326	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	66561	NR_003242	767846	Hs.657186	NR_003242		PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_51097	chr2	10830488	10830674	+	21.41326	NA	promoter-TSS (NM_001261394)	promoter-TSS (NM_001261394)	-468	NR_048552	79954	Hs.222494	NM_024894	HPRD:07849	NOL10	PQBP5	nucleolar protein 10	protein-coding
19-PTNLD28-TUMOR_peak_83166	chr5	149432829	149433001	+	21.40635	NA	TTS (NM_005211)	TTS (NM_005211)	33288	NM_001288705	1436	Hs.586219	NM_005211	HPRD:01269	CSF1R	C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_52046	chr2	33171412	33171618	+	21.40635	NA	promoter-TSS (NM_206943)	promoter-TSS (NM_206943)	-854	NM_206943	4052	Hs.619315	NM_000627	HPRD:01039	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_75429	chr4	57332655	57332899	+	21.39699	NA	promoter-TSS (NM_006947)	promoter-TSS (NM_006947)	-985	NM_001267722	6731	Hs.237825	NM_006947		SRP72	BMFF|BMFS1|HEL103	signal recognition particle 72kDa	protein-coding
19-PTNLD28-TUMOR_peak_23897	chr12	45524719	45524967	+	21.39070	NA	Intergenic	Intergenic	56409	NR_001571	6090		NR_001571	ENSG00000252310	RNY5	Y5	RNA, Ro-associated Y5	ncRNA
19-PTNLD28-TUMOR_peak_42813	chr17	61484184	61484341	+	21.39070	NA	intron (NM_025185, intron 19 of 24)	intron (NM_025185, intron 19 of 24)	33945	NM_001017917	1534	Hs.355264	NM_001915	HPRD:02485	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
19-PTNLD28-TUMOR_peak_32615	chr15	25018226	25018512	+	21.39070	NA	Intergenic	CpG	-50425	NM_022807	6638	Hs.555970	NM_003097	HPRD:01653	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
19-PTNLD28-TUMOR_peak_90481	chr6	166774580	166774859	+	21.39070	NA	Intergenic	Intergenic	18600	NR_040022	100289495		NR_040022		LOC100289495	-	uncharacterized LOC100289495	ncRNA
19-PTNLD28-TUMOR_peak_95636	chr7	137277070	137277331	+	21.39070	NA	intron (NM_004717, intron 12 of 33)	intron (NM_004717, intron 12 of 33)	-248654	NM_002825	5764	Hs.371249	NM_002825	HPRD:01199	PTN	HARP|HBGF8|HBNF|NEGF1	pleiotrophin	protein-coding
19-PTNLD28-TUMOR_peak_100105	chr8	110987752	110988119	+	21.38230	NA	promoter-TSS (NM_014379)	promoter-TSS (NM_014379)	-976	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22360	chr12	323691	323858	+	21.37508	NA	promoter-TSS (NM_001122848)	promoter-TSS (NM_001122848)	-403	NM_001122848	6539	Hs.437174	NM_003044	HPRD:04358	SLC6A12	BGT-1|BGT1|GAT2	solute carrier family 6 (neurotransmitter transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_43228	chr17	70576763	70577059	+	21.37120	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	12032	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_77533	chr4	149908192	149908432	+	21.37120	NA	Intergenic	Intergenic	-544640	NM_001166104	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_13536	chr10	50279356	50279554	+	21.37120	NA	intron (NM_001031746, intron 4 of 7)	intron (NM_001031746, intron 4 of 7)	44122	NM_144984	196740	Hs.522928	NM_144984	HPRD:08503	VSTM4	C10orf72	V-set and transmembrane domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_16644	chr11	2229922	2230426	+	21.36019	NA	Intergenic	Intergenic	35881	NR_039834	100616126		NR_039834	miRBase:MI0017318	MIR4686	-	microRNA 4686	ncRNA
19-PTNLD28-TUMOR_peak_24543	chr12	54601645	54601805	+	21.36019	NA	Intergenic	Intergenic	-18947	NR_045039	23583	Hs.632721	NM_014311	HPRD:06376	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
19-PTNLD28-TUMOR_peak_79062	chr5	15366847	15367080	+	21.36019	NA	Intergenic	MamGyp-int|LTR|Gypsy	-100294	NR_109944	101929454	Hs.453273	NR_109944		LOC101929454	-	uncharacterized LOC101929454	ncRNA
19-PTNLD28-TUMOR_peak_87525	chr6	42709910	42710215	+	21.35821	NA	Intergenic	LTR33|LTR|ERVL	3822	NM_003192	6903	Hs.75064	NM_003192	HPRD:04276	TBCC	CFC	tubulin folding cofactor C	protein-coding
19-PTNLD28-TUMOR_peak_39983	chr17	7358796	7359054	+	21.35437	NA	intron (NM_000747, intron 9 of 10)	intron (NM_000747, intron 9 of 10)	10519	NM_000747	1140	Hs.330386	NM_000747	HPRD:01156	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|SCCMS	cholinergic receptor, nicotinic, beta 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_96293	chr7	150382685	150382877	+	21.35123	NA	promoter-TSS (NM_015660)	promoter-TSS (NM_015660)	-13	NM_015660	26157	Hs.647071	NM_015660	HPRD:16279	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
19-PTNLD28-TUMOR_peak_94921	chr7	116502382	116502980	+	21.35123	NA	exon (NM_006136, exon 1 of 10)	exon (NM_006136, exon 1 of 10)	118	NM_006136	830	Hs.446123	NM_006136		CAPZA2	CAPPA2|CAPZ	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_36770	chr16	22018874	22019109	+	21.35123	NA	promoter-TSS (NM_001164579)	promoter-TSS (NM_001164579)	-465	NM_001164579	730094	Hs.498890	NM_173501	ENSG00000185716	C16orf52	-	chromosome 16 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_36888	chr16	24100128	24100368	+	21.35123	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-166626	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_93148	chr7	72598655	72598816	+	21.34893	NA	non-coding (NR_003580, exon 8 of 24)	non-coding (NR_003580, exon 8 of 24)	29718	NR_002206	2970	Hs.654705	NR_002206		GTF2IP1	WBSCR7	general transcription factor IIi, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_87137	chr6	36816508	36816726	+	21.34893	NA	Intergenic	Intergenic	-9397	NM_020939	57699	Hs.657869	NM_020939	HPRD:05018	CPNE5	COPN5|CPN5	copine V	protein-coding
19-PTNLD28-TUMOR_peak_54843	chr2	110734001	110734174	+	21.34893	NA	Intergenic	Intergenic	-10470	NR_046111	440894	Hs.516403	NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
19-PTNLD28-TUMOR_peak_56559	chr2	160010027	160010310	+	21.34397	NA	intron (NM_001145909, intron 7 of 26)	intron (NM_001145909, intron 7 of 26)	-33178	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_61003	chr20	37709918	37710084	+	21.32480	NA	Intergenic	Intergenic	119020	NM_021931	60625	Hs.444520	NM_021931	HPRD:13145	DHX35	C20orf15|DDX35|KAIA0875	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding
19-PTNLD28-TUMOR_peak_88993	chr6	108169493	108169735	+	21.32480	NA	Intergenic	CpG	-24093	NM_198081	256380	Hs.486109	NM_198081		SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_14708	chr10	87863569	87863738	+	21.32480	NA	intron (NM_017551, intron 4 of 15)	intron (NM_017551, intron 4 of 15)	160892	NR_029907	442911		NR_029907		MIR346	MIRN346|hsa-mir-346|miR-346|miRNA346	microRNA 346	ncRNA
19-PTNLD28-TUMOR_peak_90009	chr6	151061260	151061570	+	21.32480	NA	intron (NM_001029884, intron 3 of 16)	intron (NM_001029884, intron 3 of 16)	-125400	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_75692	chr4	75550011	75550288	+	21.32480	NA	Intergenic	Intergenic	69558	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_102509	chr9	23769598	23769837	+	21.32480	NA	intron (NM_004432, intron 1 of 6)	intron (NM_004432, intron 1 of 6)	51761	NM_001171197	1993	Hs.166109	NM_004432	HPRD:03396	ELAVL2	HEL-N1|HELN1|HUB	ELAV like neuron-specific RNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91973	chr7	34360679	34361155	+	21.32480	NA	Intergenic	Intergenic	-336934	NM_001300934	387129	Hs.652373	NM_207172	HPRD:10547	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_80633	chr5	72815614	72815913	+	21.32480	NA	Intergenic	Intergenic	21513	NM_001207	689	Hs.591768	NM_001207	HPRD:03966	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_36001	chr16	4431192	4431416	+	21.31254	NA	exon (NM_138440, exon 2 of 2)	exon (NM_138440, exon 2 of 2)	9455	NM_138440	114990	Hs.372579	NM_138440	HPRD:10587	VASN	SLITL2	vasorin	protein-coding
19-PTNLD28-TUMOR_peak_58100	chr2	208693820	208694053	+	21.30225	NA	intron (NM_001080475, intron 7 of 7)	intron (NM_001080475, intron 7 of 7)	-59793	NM_003468	7855	Hs.17631	NM_003468	HPRD:03427	FZD5	C2orf31|HFZ5	frizzled class receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_39097	chr16	84616672	84616810	+	21.30225	NA	intron (NM_021149, intron 3 of 3)	MIR|SINE|MIR	34961	NM_021149	23406	Hs.289092	NM_021149	HPRD:09482	COTL1	CLP	coactosin-like F-actin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_98878	chr8	57032406	57032589	+	21.30225	NA	Intergenic	Intergenic	-5956	NM_005372	4342	Hs.533432	NM_005372	HPRD:01816	MOS	MSV	v-mos Moloney murine sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_110315	chrY	26471930	26472216	+	21.30225	NA	Intergenic	Intergenic	-111095	NR_001555	84559	Hs.531603	NR_001555	ENSG00000172332	GOLGA2P2Y	GOLGA2LY|GOLGA2LY1|GOLGA2P2	golgin A2 pseudogene 2, Y-linked	pseudo
19-PTNLD28-TUMOR_peak_108577	chrX	65859035	65859273	+	21.30225	NA	promoter-TSS (NM_021783)	promoter-TSS (NM_021783)	-14	NM_001199687	60401	Hs.302017	NM_021783	HPRD:02230	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_92561	chr7	51276492	51276655	+	21.30225	NA	intron (NM_001287436, intron 2 of 13)	SVA_D|Other|Other	107942	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_85537	chr6	14075324	14075719	+	21.30225	NA	Intergenic	Intergenic	-41966	NM_001251901	9308	Hs.595133	NM_004233	HPRD:05170	CD83	BL11|HB15	CD83 molecule	protein-coding
19-PTNLD28-TUMOR_peak_95875	chr7	140767262	140767415	+	21.29698	NA	Intergenic	L1HS|LINE|L1	-6694	NM_001195278	100507421	Hs.283851	NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
19-PTNLD28-TUMOR_peak_96278	chr7	150066199	150066515	+	21.29495	NA	intron (NM_001099696, intron 1 of 1)	intron (NM_001099696, intron 1 of 1)	478	NM_001099695	29803	Hs.647086	NM_013400	HPRD:17966	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
19-PTNLD28-TUMOR_peak_78620	chr5	923652	923842	+	21.29239	NA	Intergenic	Intergenic	30778	NM_004237	9319	Hs.436187	NM_004237	HPRD:05145	TRIP13	16E1BP	thyroid hormone receptor interactor 13	protein-coding
19-PTNLD28-TUMOR_peak_57183	chr2	178261504	178261684	+	21.29239	NA	intron (NM_003659, intron 1 of 19)	intron (NM_003659, intron 1 of 19)	4123	NM_003659	8540	Hs.516543	NM_003659	HPRD:04337	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY	alkylglycerone phosphate synthase	protein-coding
19-PTNLD28-TUMOR_peak_32237	chr14	104064119	104064253	+	21.29168	NA	Intergenic	Intergenic	-31339	NM_001130107	3831	Hs.20107	NM_005552	HPRD:02489	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
19-PTNLD28-TUMOR_peak_70626	chr3	128256009	128256293	+	21.29150	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	29473	NR_026954	90246	Hs.635164	NR_026954		LOC90246	-	uncharacterized LOC90246	ncRNA
19-PTNLD28-TUMOR_peak_97896	chr8	28198672	28198967	+	21.29150	NA	intron (NM_006228, intron 3 of 3)	intron (NM_006228, intron 3 of 3)	2654	NM_001284244	5368	Hs.88218	NM_006228	HPRD:03268	PNOC	PPNOC	prepronociceptin	protein-coding
19-PTNLD28-TUMOR_peak_100854	chr8	129069796	129070095	+	21.29150	NA	intron (NR_003367, intron 4 of 7)	intron (NR_003367, intron 4 of 7)	8547	NR_031612	100302175		NR_031612	miRBase:MI0006340	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_2236	chr1	33924273	33924422	+	21.29150	NA	Intergenic	Intergenic	-13885	NM_145238	7579	Hs.442705	NM_145238	HPRD:15769	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_92108	chr7	39781643	39781855	+	21.29150	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	8582	NR_026999	349114	Hs.414183	NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
19-PTNLD28-TUMOR_peak_7086	chr1	154568219	154568375	+	21.29150	NA	intron (NM_015841, intron 6 of 14)	Tigger3b|DNA|TcMar-Tigger	10479	NM_001193495	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_40492	chr17	18872945	18873135	+	21.28959	NA	intron (NM_001042450, intron 7 of 14)	intron (NM_001042450, intron 7 of 14)	17562	NM_001270648	125206	Hs.462418	NM_152351	HPRD:15394	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 (sodium/sugar cotransporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_69668	chr3	109271089	109271372	+	21.28959	NA	Intergenic	Intergenic	142393	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_20654	chr11	94681439	94681768	+	21.28792	NA	Intergenic	Intergenic	25173	NM_016403	51503	Hs.503597	NM_016403	HPRD:13703	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_63822	chr21	44537407	44537567	+	21.28792	NA	Intergenic	LTR13|LTR|ERVK	-9799	NM_001025204	7307	Hs.365116	NM_006758	HPRD:01871	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
19-PTNLD28-TUMOR_peak_30500	chr14	57579317	57579456	+	21.28792	NA	Intergenic	L1PA2|LINE|L1	-156220	NM_018229	55745	Hs.597349	NM_018229	HPRD:12630	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor-related protein complex 5, mu 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_6054	chr1	121120744	121120970	+	21.27778	NA	intron (NR_120535, intron 3 of 5).2	intron (NR_120535, intron 3 of 5).2	13705	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_73524	chr3	195624105	195624269	+	21.27003	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	-1755	NM_001010938	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_24022	chr12	48166957	48167117	+	21.25948	NA	promoter-TSS (NM_017842)	promoter-TSS (NM_017842)	70	NM_017842	55652	Hs.438867	NM_017842	HPRD:07916	SLC48A1	HRG-1|HRG1|hHRG-1	solute carrier family 48 (heme transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_48121	chr19	19080510	19080681	+	21.23983	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-28554	NM_004838	9454	Hs.720208	NM_004838	HPRD:07270	HOMER3	HOMER-3|VESL3	homer homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_3948	chr1	61911251	61911420	+	21.23786	NA	intron (NM_001145511, intron 10 of 10)	intron (NM_001145511, intron 10 of 10)	-192145	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39345	chr16	88349442	88349597	+	21.23786	NA	Intergenic	Intergenic	121632	NR_110944	101928880	Hs.634835	NR_110944	ENSG00000260420	LOC101928880	LA16c-444G7.2	uncharacterized LOC101928880	ncRNA
19-PTNLD28-TUMOR_peak_4983	chr1	94527113	94527393	+	21.23786	NA	intron (NM_000350, intron 13 of 49)	intron (NM_000350, intron 13 of 49)	59452	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_74381	chr4	8846350	8846511	+	21.23458	NA	Intergenic	AluSx1|SINE|Alu	27113	NM_018942	3166	Hs.104134	NM_018942	HPRD:00873	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_20220	chr11	77733471	77733906	+	21.22808	NA	intron (NM_001203261, intron 2 of 2)	intron (NM_001203261, intron 2 of 2)	632	NM_023930	65987	Hs.709780	NM_023930	HPRD:13764	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_17959	chr11	34050049	34050292	+	21.22808	NA	Intergenic	Intergenic	-23060	NM_005898	4076	Hs.471818	NM_005898	HPRD:03108	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_97138	chr8	10795331	10795495	+	21.22808	NA	intron (NM_173683, intron 1 of 2)	L1PA2|LINE|L1	97399	NR_030328	693183		NR_030328		MIR598	MIRN598|hsa-mir-598	microRNA 598	ncRNA
19-PTNLD28-TUMOR_peak_99173	chr8	72170461	72170633	+	21.22751	NA	intron (NM_001288574, intron 11 of 17)	intron (NM_001288574, intron 11 of 17)	98199	NM_172059	2138	Hs.491997	NM_000503	HPRD:03388	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_15901	chr10	120282399	120282639	+	21.22751	NA	Intergenic	Intergenic	72641	NM_004248	2834	Hs.248119	NM_004248	HPRD:02937	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_41912	chr17	44859672	44859901	+	21.22751	NA	intron (NM_030753, intron 1 of 4)	intron (NM_030753, intron 1 of 4)	36340	NM_030753	7473	Hs.445884	NM_030753	HPRD:01318	WNT3	INT4	wingless-type MMTV integration site family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_83829	chr5	169586232	169586419	+	21.22751	NA	Intergenic	Intergenic	39820	NR_108022	100507267	Hs.634846	NR_108022		LINC01187	CTB-27N1.1|KIDR	long intergenic non-protein coding RNA 1187	ncRNA
19-PTNLD28-TUMOR_peak_71731	chr3	150863919	150864112	+	21.22751	NA	intron (NM_053002, intron 4 of 42)	MER5A|DNA|hAT-Charlie	56973	NM_013308	29909	Hs.549152	NM_013308	HPRD:17071	GPR171	H963	G protein-coupled receptor 171	protein-coding
19-PTNLD28-TUMOR_peak_49179	chr19	42077027	42077265	+	21.22751	NA	intron (NM_001288773, intron 2 of 7)	intron (NM_001288773, intron 2 of 7)	-5385	NM_001098506	90273	Hs.655885	NM_033543	HPRD:10179	CEACAM21	CEACAM3|R29124_1	carcinoembryonic antigen-related cell adhesion molecule 21	protein-coding
19-PTNLD28-TUMOR_peak_88161	chr6	57492951	57493117	+	21.22751	NA	intron (NM_000947, intron 12 of 14)	intron (NM_000947, intron 12 of 14)	310619	NM_001282487	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	primase, DNA, polypeptide 2 (58kDa)	protein-coding
19-PTNLD28-TUMOR_peak_17024	chr11	9060786	9061003	+	21.22751	NA	intron (NM_001170690, intron 12 of 17)	L2a|LINE|L2	-35298	NM_020645	56675	Hs.523467	NM_020645	HPRD:14840	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_39639	chr17	1593707	1593886	+	21.22751	NA	Intergenic	SVA_F|Other|Other	-5620	NM_006445	10594	Hs.181368	NM_006445	HPRD:06295	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
19-PTNLD28-TUMOR_peak_56050	chr2	139479942	139480147	+	21.22125	NA	intron (NM_007226, intron 1 of 1)	L2a|LINE|L2	57767	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_63751	chr21	43771226	43771434	+	21.22125	NA	promoter-TSS (NM_005423)	promoter-TSS (NM_005423)	-122	NM_005423	7032	Hs.2979	NM_005423	HPRD:01682	TFF2	SML1|SP	trefoil factor 2	protein-coding
19-PTNLD28-TUMOR_peak_101036	chr8	132647863	132648030	+	21.22125	NA	Intergenic	L1PA3|LINE|L1	-268410	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75144	chr4	48256352	48256892	+	21.22125	NA	intron (NM_003215, intron 1 of 17)	intron (NM_003215, intron 1 of 17)	15192	NM_003215	7006	Hs.479670	NM_003215	HPRD:02786	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_4887	chr1	93399138	93399298	+	21.22125	NA	intron (NM_001252273, intron 1 of 4)	intron (NM_001252273, intron 1 of 4)	27861	NM_001252269	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_54250	chr2	96533183	96533340	+	21.21542	NA	Intergenic	Intergenic	-40532	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
19-PTNLD28-TUMOR_peak_31753	chr14	93192554	93192735	+	21.21542	NA	intron (NM_001008530, intron 3 of 14)	intron (NM_001008530, intron 3 of 14)	22403	NM_001008530	5641	Hs.18069	NM_005606	HPRD:04017	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
19-PTNLD28-TUMOR_peak_75447	chr4	57861685	57862017	+	21.21542	NA	intron (NM_000938, intron 6 of 24)	MLT1F2|LTR|ERVL-MaLR	16742	NM_000938	5431	Hs.602757	NM_000938	HPRD:15943	POLR2B	POL2RB|RPB2|hRPB140|hsRPB2	polymerase (RNA) II (DNA directed) polypeptide B, 140kDa	protein-coding
19-PTNLD28-TUMOR_peak_96467	chr7	152178984	152179157	+	21.21542	NA	Intergenic	Intergenic	17861	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
19-PTNLD28-TUMOR_peak_77208	chr4	140578237	140578411	+	21.21542	NA	Intergenic	Intergenic	-8598	NM_001204368	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_2434	chr1	36756370	36756669	+	21.21542	NA	intron (NM_005119, intron 5 of 11)	intron (NM_005119, intron 5 of 11)	-15475	NM_001162530	79729	Hs.524496	NM_024676	HPRD:08011	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
19-PTNLD28-TUMOR_peak_73678	chr3	197457063	197457262	+	21.21542	NA	intron (NM_001145642, intron 1 of 20)	MLT1K|LTR|ERVL-MaLR	6635	NM_014687	9711	Hs.478868	NM_014687	ENSG00000145016	KIAA0226	RUBICON|SCAR15	KIAA0226	protein-coding
19-PTNLD28-TUMOR_peak_98456	chr8	42109877	42110061	+	21.21542	NA	Intergenic	LTR9|LTR|ERV1	-18851	NM_001242778	3551	Hs.597664	NM_001556	HPRD:04462	IKBKB	IKK-beta|IKK2|IKKB|IMD15|NFKBIKB	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	protein-coding
19-PTNLD28-TUMOR_peak_42400	chr17	53661535	53661744	+	21.21542	NA	Intergenic	MIR|SINE|MIR	138586	NM_018286	55273	Hs.173233	NM_018286	HPRD:07719	TMEM100	-	transmembrane protein 100	protein-coding
19-PTNLD28-TUMOR_peak_80130	chr5	59680920	59681302	+	21.21278	NA	intron (NM_001165899, intron 1 of 16)	LTR16E1|LTR|ERVL	-102429	NR_024617	25859	Hs.146312	NM_001039499	HPRD:09230	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_35136	chr15	89710905	89711395	+	21.21278	NA	intron (NM_007011, intron 9 of 14)	intron (NM_007011, intron 9 of 14)	53772	NM_000326	6017	Hs.1933	NM_000326	HPRD:01572	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_87491	chr6	42165729	42165994	+	21.21278	NA	Intergenic	L2a|LINE|L2	-3167	NM_002098	2979	Hs.446529	NM_002098		GUCA1B	GCAP2|GUCA2|RP48	guanylate cyclase activator 1B (retina)	protein-coding
19-PTNLD28-TUMOR_peak_40245	chr17	13297608	13297983	+	21.21278	NA	Intergenic	Intergenic	207449	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_56143	chr2	145275181	145275342	+	21.21278	NA	intron (NM_014795, intron 1 of 9)	CpG-15610	-1920	NR_040248	100303491	Hs.560789	NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14416	chr10	77302808	77303005	+	21.21278	NA	Intergenic	Intergenic	133991	NR_110304	101929234	Hs.694695	NR_110304	ENSG00000272692	LOC101929234	-	uncharacterized LOC101929234	ncRNA
19-PTNLD28-TUMOR_peak_100889	chr8	129603583	129603784	+	21.21278	NA	Intergenic	Intergenic	-26758	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_5238	chr1	104193680	104193871	+	21.20789	NA	Intergenic	HERVE_a-int|LTR|ERV1	-4366	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_10954	chr1	234040312	234040671	+	21.19426	NA	promoter-TSS (NM_173508)	promoter-TSS (NM_173508)	33	NM_173508	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_36760	chr16	21851693	21851831	+	21.19363	NA	Intergenic	Intergenic	-21267	NR_003370	730092	Hs.31290	NR_003370		RRN3P1	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_11857	chr10	6099230	6099417	+	21.19288	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	5010	NM_000417	3559	Hs.231367	NM_000417	HPRD:00986	IL2RA	CD25|IDDM10|IL2R|TCGFR|p55	interleukin 2 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_48855	chr19	38495211	38495444	+	21.18703	NA	intron (NM_015073, intron 1 of 21)	MLT1K|LTR|ERVL-MaLR	97466	NM_015073	23094	Hs.655502	NM_015073	HPRD:18755	SIPA1L3	SPAL3	signal-induced proliferation-associated 1 like 3	protein-coding
19-PTNLD28-TUMOR_peak_101519	chr8	143253244	143253462	+	21.18703	NA	Intergenic	Intergenic	-4347	NR_039682	100616268		NR_039682	miRBase:MI0016823	MIR4472-1	-	microRNA 4472-1	ncRNA
19-PTNLD28-TUMOR_peak_5245	chr1	104287818	104288009	+	21.18126	NA	Intergenic	HERVE_a-int|LTR|ERV1	-4366	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_56271	chr2	150733694	150733915	+	21.16718	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-289474	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_105255	chr9	111263396	111263554	+	21.16718	NA	Intergenic	L1PA2|LINE|L1	354800	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_29291	chr14	20144883	20145058	+	21.16718	NA	Intergenic	Intergenic	37521	NM_001197287	79334	Hs.554706	NM_001197287		OR11H2	C14orf15|OR11H2P|OR11H8P	olfactory receptor, family 11, subfamily H, member 2	protein-coding
19-PTNLD28-TUMOR_peak_77688	chr4	154216291	154216471	+	21.16718	NA	intron (NM_015271, intron 5 of 11)	intron (NM_015271, intron 5 of 11)	13582	NR_001562	303	Hs.546235	NR_001562		ANXA2P1	ANX2L1|ANX2P1|LPC2A	annexin A2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_3246	chr1	47005753	47005947	+	21.16718	NA	intron (NR_038403, intron 1 of 7)	intron (NR_038403, intron 1 of 7)	1482	NR_038403	100507423	Hs.601863	NR_038403	ENSG00000269956	MKNK1-AS1	-	MKNK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_59564	chr20	3725694	3725876	+	21.15517	NA	intron (NM_001197327, intron 5 of 12)	intron (NM_001197327, intron 5 of 12)	12468	NM_001197327	116835	Hs.516854	NM_052970	HPRD:13683	HSPA12B	C20orf60|dJ1009E24.2	heat shock 70kD protein 12B	protein-coding
19-PTNLD28-TUMOR_peak_105263	chr9	111332020	111332212	+	21.15517	NA	Intergenic	Intergenic	286159	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_53076	chr2	64710120	64710309	+	21.15517	NA	Intergenic	MIRb|SINE|MIR	28887	NM_014181	29094	Hs.372208	NM_014181	HPRD:13708	LGALSL	GRP	lectin, galactoside-binding-like	protein-coding
19-PTNLD28-TUMOR_peak_17781	chr11	29802235	29802585	+	21.14361	NA	Intergenic	Intergenic	236167	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_82819	chr5	141826433	141826621	+	21.14361	NA	intron (NR_120664, intron 3 of 3)	MER41B|LTR|ERV1	121669	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA
19-PTNLD28-TUMOR_peak_36345	chr16	12183647	12183942	+	21.14361	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	113192	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_53464	chr2	73119962	73120096	+	21.14067	NA	TTS (NM_003124)	TTS (NM_003124)	5517	NM_003124	6697	Hs.301540	NM_003124	HPRD:01632	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
19-PTNLD28-TUMOR_peak_48116	chr19	19051050	19051349	+	21.13426	NA	promoter-TSS (NM_001145722)	promoter-TSS (NM_001145722)	-38	NM_001145721	9454	Hs.720208	NM_004838	HPRD:07270	HOMER3	HOMER-3|VESL3	homer homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_2923	chr1	42905702	42905905	+	21.13400	NA	intron (NM_001146192, intron 2 of 6)	intron (NM_001146192, intron 2 of 6)	16135	NM_001146192	84217	Hs.294009	NM_032257	HPRD:15740	ZMYND12	-	zinc finger, MYND-type containing 12	protein-coding
19-PTNLD28-TUMOR_peak_90633	chr6	169740585	169740933	+	21.13400	NA	Intergenic	Intergenic	-86550	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_91617	chr7	23449991	23450352	+	21.13400	NA	intron (NM_006547, intron 3 of 14)	intron (NM_006547, intron 3 of 14)	59824	NM_006547	10643	Hs.700696	NM_006547	HPRD:16306	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_61912	chr20	50045022	50045189	+	21.13400	NA	intron (NM_001258296, intron 9 of 10)	intron (NM_001258296, intron 9 of 10)	24409	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	ncRNA
19-PTNLD28-TUMOR_peak_14424	chr10	77524843	77525105	+	21.13400	NA	Intergenic	Intergenic	-17545	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_83177	chr5	149597818	149597960	+	21.13400	NA	Intergenic	Intergenic	28369	NM_014228	6534	Hs.241597	NM_014228	HPRD:09371	SLC6A7	PROT	solute carrier family 6 (neurotransmitter transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_90118	chr6	153352500	153352763	+	21.13142	NA	intron (NM_012419, intron 2 of 4)	MIRc|SINE|MIR	-28706	NM_001301047	54516	Hs.225836	NM_019041	HPRD:17613	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translational release factor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_33610	chr15	52669554	52669853	+	21.13142	NA	intron (NM_001142495, intron 18 of 39)	intron (NM_001142495, intron 18 of 39)	-81708	NM_018728	55930	Hs.487036	NM_018728	HPRD:11380	MYO5C	-	myosin VC	protein-coding
19-PTNLD28-TUMOR_peak_108985	chrX	101186553	101187203	+	21.13142	NA	5' UTR (NM_001282401, exon 1 of 9)	5' UTR (NM_001282401, exon 1 of 9)	161	NM_001011657	84460	Hs.496512	NM_001011657	HPRD:10029	ZMAT1	-	zinc finger, matrin-type 1	protein-coding
19-PTNLD28-TUMOR_peak_30120	chr14	48264233	48264466	+	21.13142	NA	promoter-TSS (NR_039996)	promoter-TSS (NR_039996)	-132	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_79499	chr5	36423088	36423363	+	21.13142	NA	Intergenic	L2a|LINE|L2	-121214	NM_145000	202151	Hs.729817	NM_145000	HPRD:08064	RANBP3L	-	RAN binding protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_41006	chr17	31491176	31491496	+	21.13142	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	128670	NM_183377	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_91056	chr7	5216762	5216964	+	21.12894	NA	Intergenic	Intergenic	-12972	NM_001033518	26100	Hs.122363	NM_015610	HPRD:15679	WIPI2	ATG18B|Atg21|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
19-PTNLD28-TUMOR_peak_60979	chr20	37335266	37335560	+	21.12894	NA	Intergenic	Intergenic	-17692	NM_080552	140679	Hs.179080	NM_080552	HPRD:18058	SLC32A1	VGAT|VIAAT	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_26816	chr12	122510447	122510776	+	21.12894	NA	Intergenic	HAL1|LINE|L1	-6023	NM_014938	22877	Hs.437153	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_24956	chr12	64256075	64256301	+	21.12894	NA	intron (NM_020762, intron 1 of 21)	intron (NM_020762, intron 1 of 21)	17647	NM_020762	57522	Hs.210751	NM_020762	HPRD:09406	SRGAP1	ARHGAP13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_30771	chr14	65016556	65016909	+	21.12894	NA	exon (NM_172365, exon 1 of 12)	exon (NM_172365, exon 1 of 12)	112	NM_172365	145376	Hs.144696	NM_172365	HPRD:08505	PPP1R36	C14orf50	protein phosphatase 1, regulatory subunit 36	protein-coding
19-PTNLD28-TUMOR_peak_53385	chr2	71088988	71089228	+	21.12894	NA	Intergenic	Intergenic	-26155	NM_015717	50489	Hs.199731	NM_015717	HPRD:07278	CD207	CLEC4K	CD207 molecule, langerin	protein-coding
19-PTNLD28-TUMOR_peak_6513	chr1	147833650	147833755	+	21.12201	NA	intron (NR_102404, intron 17 of 18).2	intron (NR_102404, intron 17 of 18).2	-26732	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_39407	chr16	88924244	88924404	+	21.10721	NA	promoter-TSS (NM_000512)	promoter-TSS (NM_000512)	818	NM_016209	51693	Hs.461722	NM_016209	HPRD:13711	TRAPPC2L	HSPC176	trafficking protein particle complex 2-like	protein-coding
19-PTNLD28-TUMOR_peak_8880	chr1	185648350	185648688	+	21.10686	NA	Intergenic	Intergenic	-50899	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
19-PTNLD28-TUMOR_peak_8637	chr1	181392778	181392953	+	21.10678	NA	Intergenic	Intergenic	-59821	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_27306	chr12	133405599	133405846	+	21.10678	NA	promoter-TSS (NM_001172557)	promoter-TSS (NM_001172557)	-296	NM_001172557	2802	Hs.507333	NM_005895	HPRD:03990	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
19-PTNLD28-TUMOR_peak_86901	chr6	33918379	33918530	+	21.10678	NA	Intergenic	Intergenic	49374	NR_031681	100302123		NR_031681	miRBase:MI0006415	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	ncRNA
19-PTNLD28-TUMOR_peak_31224	chr14	74004479	74004701	+	21.10678	NA	intron (NM_001037161, intron 1 of 2)	CpG	662	NM_001037161	641371	Hs.446685	NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_88588	chr6	85484542	85484736	+	21.10678	NA	Intergenic	CpG	-10685	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_102277	chr9	16039489	16039985	+	21.10191	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	213368	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_36414	chr16	14394804	14394980	+	21.09474	NA	Intergenic	Intergenic	-2932	NR_030177	574455		NR_030177	miRBase:MI0003137	MIR193B	MIRN193B	microRNA 193b	ncRNA
19-PTNLD28-TUMOR_peak_33948	chr15	64237605	64237867	+	21.09474	NA	intron (NM_014326, intron 4 of 11)	intron (NM_014326, intron 4 of 11)	17263	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
19-PTNLD28-TUMOR_peak_50966	chr2	9380987	9381133	+	21.09003	NA	intron (NM_003887, intron 1 of 27)	MER44C|DNA|TcMar-Tigger	34166	NM_003887	8853	Hs.555902	NM_003887	HPRD:04820	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
19-PTNLD28-TUMOR_peak_65860	chr22	44747737	44747970	+	21.09003	NA	Intergenic	Intergenic	-39122	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
19-PTNLD28-TUMOR_peak_94656	chr7	104994973	104995124	+	21.09003	NA	intron (NM_182692, intron 2 of 15)	intron (NM_182692, intron 2 of 15)	34329	NM_182692	6733	Hs.285197	NM_182691	HPRD:04280	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_72606	chr3	180319856	180320142	+	21.09003	NA	promoter-TSS (NM_001042601)	promoter-TSS (NM_001042601)	81	NM_001288582	151613	Hs.43213	NM_133462	HPRD:15579	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
19-PTNLD28-TUMOR_peak_24001	chr12	47671900	47672121	+	21.09003	NA	Intergenic	Intergenic	-61784	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32975	chr15	33534938	33535409	+	21.07708	NA	intron (NR_046005, intron 5 of 8)	MIR|SINE|MIR	4583	NR_046005	100652857	Hs.439998	NR_046005		TMCO5B	-	transmembrane and coiled-coil domains 5B, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26068	chr12	107450867	107451232	+	21.07243	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	36586	NM_004075	1407	Hs.151573	NM_004075	HPRD:09050	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_43786	chr17	76858231	76858695	+	21.07243	NA	intron (NM_003255, intron 3 of 4)	intron (NM_003255, intron 3 of 4)	-21494	NM_025090	57602	Hs.464243	NM_025090	HPRD:07164	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
19-PTNLD28-TUMOR_peak_13466	chr10	48714349	48714536	+	21.07243	NA	Intergenic	Intergenic	92543	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_33138	chr15	40347609	40348282	+	21.07243	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	16433	NR_040059	100131089	Hs.386000	NR_040059	ENSG00000248508	SRP14-AS1	-	SRP14 antisense RNA1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_34868	chr15	83002088	83002406	+	21.06587	NA	promoter-TSS (NR_120378)	promoter-TSS (NR_120378)	-657	NR_120378	102724034	Hs.694638	NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
19-PTNLD28-TUMOR_peak_66918	chr3	15674764	15674945	+	21.06580	NA	intron (NM_001281724, intron 3 of 5)	intron (NM_001281724, intron 3 of 5)	31378	NM_001281725	686	Hs.517830	NM_000060	HPRD:08359	BTD	-	biotinidase	protein-coding
19-PTNLD28-TUMOR_peak_88748	chr6	90708945	90709138	+	21.06580	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	104853	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_106658	chr9	137536694	137537199	+	21.06418	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	3295	NM_000093	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_73453	chr3	194918860	194919095	+	21.05641	NA	intron (NM_152531, intron 2 of 3)	intron (NM_152531, intron 2 of 3)	50377	NR_102711	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_801	chr1	11954086	11954233	+	21.05641	NA	Intergenic	Intergenic	32326	NM_138346	90231	Hs.520094	NM_138346	HPRD:14576	KIAA2013	-	KIAA2013	protein-coding
19-PTNLD28-TUMOR_peak_99815	chr8	102615914	102616155	+	21.05641	NA	intron (NM_024915, intron 8 of 15)	intron (NM_024915, intron 8 of 15)	111366	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_39724	chr17	2829413	2829615	+	21.05641	NA	intron (NM_015085, intron 3 of 24)	intron (NM_015085, intron 3 of 24)	39675	NR_110818	101927911	Hs.626373	NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
19-PTNLD28-TUMOR_peak_97513	chr8	21598298	21598488	+	21.04658	NA	intron (NM_001165038, intron 3 of 7)	L2c|LINE|L2	47953	NM_001495	2675	Hs.441202	NM_001495	HPRD:11801	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_30686	chr14	62135079	62135241	+	21.04342	NA	Intergenic	Intergenic	-26959	NM_181054	3091	Hs.597216	NM_001530	HPRD:04517	HIF1A	HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_79902	chr5	54286689	54286894	+	21.04342	NA	Intergenic	Intergenic	-5377	NM_001135604	11082	Hs.129944	NM_007036	HPRD:03310	ESM1	endocan	endothelial cell-specific molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_96953	chr8	7061722	7061982	+	21.04342	NA	Intergenic	Intergenic	59162	NR_027000	349196	Hs.559040	NM_001025473		LINC00965	-	long intergenic non-protein coding RNA 965	ncRNA
19-PTNLD28-TUMOR_peak_63178	chr21	33775585	33775767	+	21.04342	NA	Intergenic	Intergenic	-9069	NM_001286556	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_78626	chr5	981184	981352	+	21.04342	NA	Intergenic	Intergenic	16187	NR_104614	100506688	Hs.532063	NM_001242737		LOC100506688	-	uncharacterized LOC100506688	ncRNA
19-PTNLD28-TUMOR_peak_71359	chr3	141363748	141363982	+	21.04342	NA	Intergenic	Intergenic	-93186	NM_014245	9616	Hs.134623	NM_014245		RNF7	CKBBP1|ROC2|SAG	ring finger protein 7	protein-coding
19-PTNLD28-TUMOR_peak_85046	chr6	5695549	5695875	+	21.04342	NA	promoter-TSS (NR_110842)	promoter-TSS (NR_110842)	-207	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
19-PTNLD28-TUMOR_peak_73827	chr4	1411346	1411561	+	21.04342	NA	Intergenic	Zaphod3|DNA|hAT-Tip100	-11223	NM_001290079	54729	Hs.526396	NM_001290079		NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_74147	chr4	6112104	6112281	+	21.04342	NA	intron (NM_001099433, intron 2 of 20)	MLT1B|LTR|ERVL-MaLR	90126	NM_001099433	152789	Hs.479066	NM_144720	HPRD:11292	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_73347	chr3	193930640	193931072	+	21.04342	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	-6760	NR_125404	100505920	Hs.436654	NR_125403		LOC100505920	-	uncharacterized LOC100505920	ncRNA
19-PTNLD28-TUMOR_peak_81731	chr5	118670723	118670915	+	21.04342	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	1949	NM_001286814	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_58183	chr2	212084484	212084653	+	21.03653	NA	Intergenic	L1PA2|LINE|L1	602273	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_26710	chr12	121378418	121378837	+	21.03653	NA	Intergenic	AluY|SINE|Alu	31468	NR_024345	283460	Hs.612351	NM_178513	ENSG00000272214	HNF1A-AS1	C12orf27|NCRNA00262	HNF1A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_66165	chr3	587615	588030	+	21.03653	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-45966	NR_110118	101927215	Hs.650700	NR_110118	ENSG00000224957	LINC01266	-	long intergenic non-protein coding RNA 1266	ncRNA
19-PTNLD28-TUMOR_peak_100231	chr8	118045571	118045788	+	21.03653	NA	intron (NM_001172813, intron 2 of 10)	L1MB5|LINE|L1	82489	NM_001172815	169026	Hs.532270	NM_173851	HPRD:15370	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_109121	chrX	107520689	107520827	+	21.03653	NA	intron (NM_001287758, intron 3 of 45)	L1PA3|LINE|L1	160902	NM_001287760	1288	Hs.145586	NM_001847	HPRD:02364	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen, type IV, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_74877	chr4	27077290	27077788	+	21.03653	NA	Intergenic	L1PA2|LINE|L1	215226	NM_020860	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_55960	chr2	137005239	137005452	+	21.03026	NA	Intergenic	Intergenic	-129620	NM_003467	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_80596	chr5	72143859	72144242	+	21.03026	NA	5' UTR (NM_153188, exon 1 of 25)	5' UTR (NM_153188, exon 1 of 25)	120	NM_153188	3842	Hs.482497	NM_002270	HPRD:04210	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
19-PTNLD28-TUMOR_peak_24680	chr12	56558283	56558504	+	21.03026	NA	exon (NM_003075, exon 27 of 28)	exon (NM_003075, exon 27 of 28)	6348	NM_079423	4637	Hs.632717	NM_021019	HPRD:17618	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin, light chain 6, alkali, smooth muscle and non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_38518	chr16	69999637	69999840	+	21.02544	NA	Intergenic	CpG	14849	NM_001271197	348174	Hs.592064	NM_182619	HPRD:17360	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18, member A	protein-coding
19-PTNLD28-TUMOR_peak_94762	chr7	106820312	106820532	+	21.02511	NA	exon (NM_001244262, exon 2 of 11)	exon (NM_001244262, exon 2 of 11)	10962	NM_012257	26959	Hs.162032	NM_012257	HPRD:13634	HBP1	-	HMG-box transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_63963	chr21	45899608	45899787	+	21.02511	NA	Intergenic	LTR13|LTR|ERVK	24304	NM_030891	81543	Hs.326579	NM_030891	HPRD:11286	LRRC3	C21orf102	leucine rich repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_65959	chr22	46398744	46398904	+	21.01878	NA	Intergenic	Intergenic	-3672	NR_027240	730668	Hs.640071	NR_027240		LOC730668	-	dynein heavy chain -like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_4016	chr1	63153746	63154353	+	21.01188	NA	promoter-TSS (NM_001272002)	promoter-TSS (NM_001272002)	-10	NM_033407	85440	Hs.744927	NM_033407	HPRD:16833	DOCK7	EIEE23|ZIR2	dedicator of cytokinesis 7	protein-coding
19-PTNLD28-TUMOR_peak_46584	chr19	1383801	1384025	+	21.00208	NA	promoter-TSS (NM_024407)	promoter-TSS (NM_024407)	30	NM_024407	374291	Hs.211914	NM_024407		NDUFS7	CI-20|CI-20KD|MY017|PSST	NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)	protein-coding
19-PTNLD28-TUMOR_peak_90159	chr6	155479265	155479499	+	21.00208	NA	intron (NM_012454, intron 6 of 25)	intron (NM_012454, intron 6 of 25)	-58715	NM_001010927	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_67183	chr3	24136425	24136572	+	21.00208	NA	Intergenic	L1PA2|LINE|L1	8240	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
19-PTNLD28-TUMOR_peak_90688	chr6	170950530	170950679	+	20.99760	NA	Intergenic	Intergenic	-56824	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_18495	chr11	47869671	47870241	+	20.98489	NA	exon (NM_015231, exon 1 of 36)	exon (NM_015231, exon 1 of 36)	101	NM_015231	23279	Hs.744107	NM_015231	HPRD:16254	NUP160	-	nucleoporin 160kDa	protein-coding
19-PTNLD28-TUMOR_peak_14264	chr10	73790670	73790997	+	20.97852	NA	Intergenic	Intergenic	57698	NM_001244950	9806	Hs.523009	NM_014767	HPRD:12146	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
19-PTNLD28-TUMOR_peak_54345	chr2	97578573	97578767	+	20.97852	NA	intron (NM_001122646, intron 12 of 16)	intron (NM_001122646, intron 12 of 16)	-6173	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
19-PTNLD28-TUMOR_peak_67072	chr3	19989395	19989611	+	20.97390	NA	intron (NM_001292048, intron 1 of 5)	intron (NM_001292048, intron 1 of 5)	931	NM_004162	5868	Hs.475663	NM_004162	HPRD:01542	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_42171	chr17	47993075	47993225	+	20.96032	NA	Intergenic	Intergenic	-53412	NM_138281	1748	Hs.591167	NM_001934	HPRD:03553	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_57768	chr2	201630380	201630617	+	20.96032	NA	intron (NR_001557, intron 19 of 30)	MER21C|LTR|ERVL	-30598	NR_037886	100507140	Hs.382116	NR_037886	ENSG00000237166	LOC100507140	-	uncharacterized LOC100507140	ncRNA
19-PTNLD28-TUMOR_peak_46870	chr19	5880620	5880905	+	20.96032	NA	Intergenic	Intergenic	-10211	NM_002034	2527	Hs.631843	NM_002034	HPRD:00650	FUT5	FUC-TV	fucosyltransferase 5 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_32045	chr14	100574737	100574997	+	20.96032	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	43116	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_39091	chr16	84544888	84545207	+	20.96032	NA	Intergenic	Intergenic	-6759	NM_020947	57707	Hs.288274	NM_020947		TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_3738	chr1	56842370	56842677	+	20.96032	NA	Intergenic	Intergenic	202734	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_17535	chr11	18989442	18989763	+	20.95846	NA	Intergenic	Intergenic	-33053	NM_147199	259249	Hs.711459	NM_147199	HPRD:06246	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS-related GPR, member X1	protein-coding
19-PTNLD28-TUMOR_peak_50770	chr2	1084235	1084467	+	20.95846	NA	intron (NM_018968, intron 2 of 16)	intron (NM_018968, intron 2 of 16)	137797	NM_018968	54221	Hs.595069	NM_018968	HPRD:16374	SNTG2	G2SYN|SYN5	syntrophin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_26159	chr12	109058634	109058896	+	20.95846	NA	intron (NM_001105237, intron 3 of 10)	intron (NM_001105237, intron 3 of 10)	-31095	NM_003006	6404	Hs.591014	NM_003006	HPRD:02845	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
19-PTNLD28-TUMOR_peak_80420	chr5	68144051	68144225	+	20.95846	NA	Intergenic	Intergenic	-245638	NM_001251969	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_80790	chr5	75997176	75997440	+	20.95846	NA	intron (NM_001285460, intron 33 of 34)	intron (NM_001285460, intron 33 of 34)	-10920	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
19-PTNLD28-TUMOR_peak_11435	chr1	245237580	245237984	+	20.95846	NA	intron (NM_001290327, intron 4 of 7)	intron (NM_001290327, intron 4 of 7)	-80505	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_108601	chrX	67718660	67719102	+	20.95846	NA	5' UTR (NM_173834, exon 1 of 7)	5' UTR (NM_173834, exon 1 of 7)	257	NM_173834	286451	Hs.82719	NM_173834	HPRD:06639	YIPF6	FinGER6	Yip1 domain family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_46921	chr19	6633384	6633543	+	20.95846	NA	Intergenic	LTR13|LTR|ERVK	37136	NM_003807	8740	Hs.129708	NM_003807	HPRD:05157	TNFSF14	CD258|HVEML|LIGHT|LTg|TR2	tumor necrosis factor (ligand) superfamily, member 14	protein-coding
19-PTNLD28-TUMOR_peak_31153	chr14	71673599	71673796	+	20.95498	NA	Intergenic	Intergenic	-191357	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_95438	chr7	132265607	132265780	+	20.95498	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	-4370	NM_001105543	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_90900	chr7	2339512	2339721	+	20.94442	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	14483	NM_013321	29886	Hs.584900	NM_013321	HPRD:11592	SNX8	Mvp1	sorting nexin 8	protein-coding
19-PTNLD28-TUMOR_peak_82396	chr5	136731158	136731449	+	20.94246	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	103715	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_1563	chr1	24863073	24863292	+	20.94246	NA	3' UTR (NM_001251984, exon 4 of 4)	3' UTR (NM_001251984, exon 4 of 4)	19333	NR_109781	100506985	Hs.607088	NR_109781		LOC100506985	-	uncharacterized LOC100506985	ncRNA
19-PTNLD28-TUMOR_peak_68866	chr3	66872690	66872967	+	20.94246	NA	Intergenic	Intergenic	-175899	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_97123	chr8	10614339	10614623	+	20.94246	NA	Intergenic	Intergenic	-26397	NM_031439	83595	Hs.709543	NM_031439	HPRD:18087	SOX7	-	SRY (sex determining region Y)-box 7	protein-coding
19-PTNLD28-TUMOR_peak_48185	chr19	20070114	20070255	+	20.94246	NA	Intergenic	LTR13|LTR|ERVK	58462	NM_031218	81931	Hs.301059	NM_031218	HPRD:10334	ZNF93	HPF34|HTF34|TF34|ZNF505	zinc finger protein 93	protein-coding
19-PTNLD28-TUMOR_peak_40230	chr17	12516950	12517282	+	20.94246	NA	intron (NR_034145, intron 3 of 3)	Tigger10|DNA|TcMar-Tigger	-52091	NM_153604	93649	Hs.462257	NM_153604	HPRD:09362	MYOCD	MYCD	myocardin	protein-coding
19-PTNLD28-TUMOR_peak_44708	chr18	13375426	13375593	+	20.93200	NA	intron (NM_181482, intron 2 of 5)	intron (NM_181482, intron 2 of 5)	52024	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_104849	chr9	100069381	100069652	+	20.93200	NA	promoter-TSS (NM_020893)	promoter-TSS (NM_020893)	-394	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	BDAG1|C9orf174|KIAA1529	coiled-coil domain containing 180	protein-coding
19-PTNLD28-TUMOR_peak_908	chr1	13910175	13910861	+	20.92735	NA	exon (NM_006474, exon 1 of 6)	exon (NM_006474, exon 1 of 6)	266	NM_198389	10630	Hs.468675	NM_006474	HPRD:16398	PDPN	AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A	podoplanin	protein-coding
19-PTNLD28-TUMOR_peak_42910	chr17	62789002	62789234	+	20.92735	NA	intron (NR_024386, intron 7 of 10)	intron (NR_024386, intron 7 of 10)	-11001	NR_026899	146880	Hs.117853	NR_026899	ENSG00000215769	LOC146880	-	Rho GTPase activating protein 27 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_34961	chr15	84915170	84915498	+	20.92735	NA	Intergenic	Intergenic	10809	NM_001267536	643707	Hs.498345	NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family-like 4	protein-coding
19-PTNLD28-TUMOR_peak_80899	chr5	78990590	78990771	+	20.92712	NA	intron (NM_153610, intron 1 of 12)	intron (NM_153610, intron 1 of 12)	5021	NM_153610	202333	Hs.482625	NM_153610	HPRD:16728	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
19-PTNLD28-TUMOR_peak_68396	chr3	53288968	53289108	+	20.92712	NA	intron (NR_047580, intron 1 of 13)	intron (NR_047580, intron 1 of 13)	1092	NM_001135055	7086	Hs.89643	NM_001064	HPRD:06001	TKT	HEL107|TK|TKT1	transketolase	protein-coding
19-PTNLD28-TUMOR_peak_67138	chr3	23244521	23245090	+	20.92712	NA	promoter-TSS (NM_152653)	promoter-TSS (NM_152653)	21	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_35869	chr16	2957145	2957311	+	20.92657	NA	Intergenic	LTR13|LTR|ERVK	-4752	NM_032296	84256	Hs.655321	NM_020912	HPRD:13222	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_74175	chr4	6550389	6550518	+	20.90272	NA	intron (NM_001206994, intron 1 of 9)	ERV3-16A3_LTR|LTR|ERVL	6952	NM_001206995	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_104143	chr9	85497184	85497358	+	20.90272	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	180772	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_77868	chr4	160150371	160150547	+	20.90272	NA	Intergenic	Intergenic	-38539	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_90304	chr6	159158889	159159124	+	20.90272	NA	intron (NM_001242395, intron 9 of 15)	MIR3|SINE|MIR	26779	NR_037482	100500851		NR_037482	miRBase:MI0016424	MIR3918	-	microRNA 3918	ncRNA
19-PTNLD28-TUMOR_peak_66214	chr3	3741903	3742210	+	20.90272	NA	Intergenic	Intergenic	-99065	NM_020873	57633	Hs.163244	NM_020873	HPRD:14320	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_35832	chr16	2689066	2689403	+	20.89994	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	251	NR_024492	645644	Hs.597810	NR_024492		FLJ42627	-	uncharacterized LOC645644	ncRNA
19-PTNLD28-TUMOR_peak_101939	chr9	1224258	1224420	+	20.89630	NA	Intergenic	L1PA2|LINE|L1	173719	NM_181872	10655	Hs.59506	NM_006557	HPRD:16079	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_97119	chr8	10538503	10538740	+	20.89630	NA	intron (NM_001040032, intron 2 of 3)	intron (NM_001040032, intron 2 of 3)	8474	NM_001040032	203076	Hs.371776	NM_001040032	ENSG00000171060	C8orf74	-	chromosome 8 open reading frame 74	protein-coding
19-PTNLD28-TUMOR_peak_16915	chr11	7618215	7618434	+	20.89630	NA	promoter-TSS (NM_001256568)	promoter-TSS (NM_001256568)	-93	NM_001256568	8495	Hs.655714	NM_003621	HPRD:04391	PPFIBP2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding
19-PTNLD28-TUMOR_peak_77643	chr4	153602164	153602393	+	20.89630	NA	promoter-TSS (NM_152680)	promoter-TSS (NM_152680)	-961	NM_152680	201799	Hs.518900	NM_152680		TMEM154	-	transmembrane protein 154	protein-coding
19-PTNLD28-TUMOR_peak_96008	chr7	142654831	142655041	+	20.89336	NA	exon (NM_000420, exon 6 of 19)	exon (NM_000420, exon 6 of 19)	4567	NM_000420	3792	Hs.368588	NM_000420	HPRD:00194	KEL	CD238|ECE3	Kell blood group, metallo-endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_9168	chr1	200989459	200989603	+	20.87569	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	3297	NM_001252103	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19-PTNLD28-TUMOR_peak_79286	chr5	30429051	30429665	+	20.87437	NA	Intergenic	L1PA3|LINE|L1	-764404	NM_004932	1004	Hs.124776	NM_004932	HPRD:04305	CDH6	CAD6|KCAD	cadherin 6, type 2, K-cadherin (fetal kidney)	protein-coding
19-PTNLD28-TUMOR_peak_53956	chr2	87795730	87795917	+	20.87437	NA	intron (NR_024204, intron 3 of 3)	intron (NR_024204, intron 3 of 3)	40849	NR_024206	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
19-PTNLD28-TUMOR_peak_97653	chr8	22951788	22951964	+	20.87437	NA	intron (NR_046173, intron 2 of 3)	MER21C|LTR|ERVL	-8451	NM_003841	8794	Hs.655801	NM_003841	HPRD:04681	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain	protein-coding
19-PTNLD28-TUMOR_peak_3583	chr1	53951262	53951540	+	20.87437	NA	Intergenic	Intergenic	26329	NM_033067	63948	Hs.131654	NM_033067	HPRD:16828	DMRTB1	-	DMRT-like family B with proline-rich C-terminal, 1	protein-coding
19-PTNLD28-TUMOR_peak_35007	chr15	85711917	85712226	+	20.87437	NA	Intergenic	MER5A|DNA|hAT-Charlie	36447	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_32945	chr15	32993559	32993796	+	20.87437	NA	Intergenic	Intergenic	-16528	NM_001191323	26585	Hs.40098	NM_013372	HPRD:07048	GREM1	CKTSF1B1|CRAC1|DAND2|DRM|GREMLIN|HMPS|IHG-2	gremlin 1, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_74141	chr4	6000174	6000329	+	20.87437	NA	Intergenic	Intergenic	-75196	NR_039608	100616201		NR_039608	miRBase:MI0016749	MIR378D1	-	microRNA 378d-1	ncRNA
19-PTNLD28-TUMOR_peak_90972	chr7	3161646	3161781	+	20.87437	NA	Intergenic	L1PA3|LINE|L1	-78134	NM_032415	84433	Hs.648101	NM_032415	HPRD:06234	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_56058	chr2	139707166	139707476	+	20.87301	NA	Intergenic	Intergenic	52427	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_60438	chr20	30318608	30318853	+	20.86817	NA	Intergenic	AluY|SINE|Alu	-8074	NM_001191	598	Hs.516966	NM_001191	HPRD:02497	BCL2L1	BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS	BCL2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_63763	chr21	43854102	43854341	+	20.86817	NA	intron (NM_001001895, intron 8 of 13)	intron (NM_001001895, intron 8 of 13)	30250	NM_001001895	53347	Hs.473912	NM_018961	HPRD:06904	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
19-PTNLD28-TUMOR_peak_63915	chr21	45474698	45474872	+	20.86240	NA	intron (NM_003274, intron 4 of 22)	intron (NM_003274, intron 4 of 22)	42579	NM_003274	7109	Hs.126221	NM_003274	HPRD:03656	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
19-PTNLD28-TUMOR_peak_55824	chr2	133226420	133226768	+	20.86240	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	52447	NM_001508	2863	Hs.432395	NM_001508	HPRD:04198	GPR39	-	G protein-coupled receptor 39	protein-coding
19-PTNLD28-TUMOR_peak_62036	chr20	52112103	52112250	+	20.86240	NA	TTS (NM_001193421)	TTS (NM_001193421)	-57133	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_104917	chr9	101015905	101016092	+	20.86228	NA	intron (NM_018421, intron 1 of 12)	L2c|LINE|L2	2005	NR_051978	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_85277	chr6	10426383	10426931	+	20.85309	NA	Intergenic	Intergenic	-6860	NM_001042425	7020	Hs.519880	NM_003220	HPRD:00128	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	protein-coding
19-PTNLD28-TUMOR_peak_73571	chr3	196158136	196158310	+	20.85043	NA	intron (NM_015562, intron 1 of 10)	intron (NM_015562, intron 1 of 10)	1122	NM_015562	26043	Hs.518524	NM_015562		UBXN7	UBXD7	UBX domain protein 7	protein-coding
19-PTNLD28-TUMOR_peak_51419	chr2	20001915	20002224	+	20.85043	NA	Intergenic	Intergenic	-66546	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
19-PTNLD28-TUMOR_peak_6698	chr1	150582309	150582515	+	20.85043	NA	Intergenic	Intergenic	19197	NM_207045	2029	Hs.632456	NM_004436	HPRD:11927	ENSA	ARPP-19e	endosulfine alpha	protein-coding
19-PTNLD28-TUMOR_peak_89741	chr6	142335723	142335916	+	20.84930	NA	Intergenic	LTR30|LTR|ERV1	74117	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_78479	chr4	189910650	189910814	+	20.84930	NA	Intergenic	Intergenic	534000	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_72339	chr3	171547828	171548016	+	20.84930	NA	Intergenic	Intergenic	-13217	NM_001164436	389177	Hs.642307	NM_001164436	ENSG00000186329	TMEM212	-	transmembrane protein 212	protein-coding
19-PTNLD28-TUMOR_peak_109692	chrX	147297055	147297497	+	20.84930	NA	Intergenic	L3|LINE|CR1	234427	NM_152578	158521	Hs.128580	NM_152578	HPRD:06546	FMR1NB	CT37|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding
19-PTNLD28-TUMOR_peak_8868	chr1	185469190	185469335	+	20.84930	NA	Intergenic	ERVL-E-int|LTR|ERVL	128358	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
19-PTNLD28-TUMOR_peak_15704	chr10	114847030	114847434	+	20.84930	NA	intron (NM_001198526, intron 4 of 12)	intron (NM_001198526, intron 4 of 12)	137223	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_34083	chr15	66948391	66948624	+	20.84930	NA	intron (NR_110372, intron 1 of 4)	intron (NR_110372, intron 1 of 4)	-46167	NR_027654	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_2976	chr1	43703837	43704028	+	20.83230	NA	intron (NM_001195831, intron 22 of 23)	intron (NM_001195831, intron 22 of 23)	-31733	NM_144626	128218	Hs.104476	NM_144626	HPRD:14457	TMEM125	-	transmembrane protein 125	protein-coding
19-PTNLD28-TUMOR_peak_69547	chr3	106147399	106147765	+	20.83230	NA	Intergenic	Intergenic	-559695	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_40663	chr17	21333351	21333574	+	20.83230	NA	Intergenic	ERVL-E-int|LTR|ERVL	25014	NM_001194958	100134444	Hs.200629	NM_001194958		KCNJ18	KIR2.6|TTPP2	potassium inwardly-rectifying channel, subfamily J, member 18	protein-coding
19-PTNLD28-TUMOR_peak_63922	chr21	45536830	45537216	+	20.83102	NA	intron (NM_005049, intron 7 of 20)	intron (NM_005049, intron 7 of 20)	9815	NM_005049	5822	Hs.449076	NM_005049	HPRD:03279	PWP2	EHOC-17|PWP2H|UTP1	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_54210	chr2	95940103	95940280	+	20.83102	NA	promoter-TSS (NM_001165977)	promoter-TSS (NM_001165977)	-10	NM_144707	150696	Hs.437376	NM_144707	HPRD:17912	PROM2	PROML2	prominin 2	protein-coding
19-PTNLD28-TUMOR_peak_2067	chr1	32180678	32181433	+	20.82968	NA	Intergenic	Intergenic	-11287	NM_001856	1307	Hs.368921	NM_001856	HPRD:00381	COL16A1	447AA	collagen, type XVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_62881	chr21	18899805	18899965	+	20.82684	NA	intron (NM_001338, intron 1 of 6)	L2a|LINE|L2	14661	NM_001207063	1525	Hs.627078	NM_001338	HPRD:11804	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
19-PTNLD28-TUMOR_peak_51475	chr2	20765537	20765745	+	20.82684	NA	Intergenic	Intergenic	26667	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_13313	chr10	45906380	45906632	+	20.82684	NA	intron (NM_001256153, intron 3 of 13)	MER41B|LTR|ERV1	36882	NM_000698	240	Hs.89499	NM_000698	HPRD:01065	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_64979	chr22	29427460	29427590	+	20.82684	NA	promoter-TSS (NR_046851)	promoter-TSS (NR_046851)	-61	NR_046851	100874123	Hs.674708	NR_046851	ENSG00000177993	ZNRF3-AS1	-	ZNRF3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_17223	chr11	12290701	12290964	+	20.82475	NA	Intergenic	Intergenic	-17615	NM_032867	84953	Hs.128196	NM_032867	HPRD:08610	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_823	chr1	12127705	12127874	+	20.82475	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	4355	NM_001281430	943	Hs.1314	NM_001243	HPRD:01074	TNFRSF8	CD30|D1S166E|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_70473	chr3	125989005	125989281	+	20.81194	NA	Intergenic	Intergenic	87093	NM_014079	28999	Hs.272215	NM_014079	HPRD:07568	KLF15	KKLF	Kruppel-like factor 15	protein-coding
19-PTNLD28-TUMOR_peak_96945	chr8	6949346	6949781	+	20.80914	NA	Intergenic	CpG	-35304	NM_021010	1670	Hs.655233	NM_021010	HPRD:02720	DEFA5	DEF5|HD-5	defensin, alpha 5, Paneth cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_64161	chr22	16362032	16362183	+	20.80914	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-74170	NM_001136213	23784	Hs.581075	NM_001004053		POTEH	A26C3|ACTBL1|CT104.7|POTE22	POTE ankyrin domain family, member H	protein-coding
19-PTNLD28-TUMOR_peak_82158	chr5	132581314	132581527	+	20.80914	NA	intron (NM_015082, intron 7 of 15)	intron (NM_015082, intron 7 of 15)	181978	NR_031621	100302134		NR_031621		MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
19-PTNLD28-TUMOR_peak_24764	chr12	57636548	57636719	+	20.80812	NA	TTS (NM_001286257)	TTS (NM_001286257)	-2158	NM_020142	56901	Hs.75069	NM_020142	HPRD:14249	NDUFA4L2	NUOMS	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding
19-PTNLD28-TUMOR_peak_49625	chr19	48151756	48151993	+	20.80540	NA	intron (NM_015711, intron 1 of 14)	AluSq10|SINE|Alu	40421	NM_015711	29998	Hs.97244	NM_015711	HPRD:09296	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_69152	chr3	75707530	75707935	+	20.79305	NA	Intergenic	CpG	-5749	NR_037925	647476	Hs.274541	NR_037925		FLJ20518	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_107516	chrX	9875131	9875332	+	20.79305	NA	intron (NM_001649, intron 5 of 9)	intron (NM_001649, intron 5 of 9)	-60167	NM_001195081	100288814	Hs.722001	NM_001195081		LOC100288814	-	uncharacterized LOC100288814	protein-coding
19-PTNLD28-TUMOR_peak_70471	chr3	125978659	125978851	+	20.79305	NA	Intergenic	MamRep137|DNA|TcMar?	-78726	NM_001270364	10840	Hs.434435	NM_012190	HPRD:02594	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family, member L1	protein-coding
19-PTNLD28-TUMOR_peak_29217	chr13	114830840	114831037	+	20.79106	NA	intron (NM_007368, intron 2 of 23)	intron (NM_007368, intron 2 of 23)	67157	NM_007368	22821	Hs.593075	NM_007368	HPRD:05537	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
19-PTNLD28-TUMOR_peak_87736	chr6	45446121	45446313	+	20.79106	NA	intron (NM_001024630, intron 5 of 8)	MIRc|SINE|MIR	55903	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_12190	chr10	16874703	16875015	+	20.79106	NA	intron (NM_001081, intron 64 of 66)	intron (NM_001081, intron 64 of 66)	-15406	NM_012425	6251	Hs.524161	NM_012425	HPRD:01551	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47257	chr19	10870519	10870756	+	20.79052	NA	intron (NM_001005361, intron 2 of 20)	intron (NM_001005361, intron 2 of 20)	-20293	NR_039903	100616425		NR_039903		MIR4748	-	microRNA 4748	ncRNA
19-PTNLD28-TUMOR_peak_10636	chr1	228604444	228604603	+	20.78407	NA	promoter-TSS (NM_001134855)	promoter-TSS (NM_001134855)	60	NM_001024940	51127	Hs.121748	NM_016102	HPRD:05839	TRIM17	RBCC|RNF16|terf	tripartite motif containing 17	protein-coding
19-PTNLD28-TUMOR_peak_25368	chr12	76338039	76338589	+	20.76879	NA	Intergenic	Intergenic	87242	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_77186	chr4	140223293	140223512	+	20.76569	NA	intron (NM_057175, intron 1 of 19)	intron (NM_057175, intron 1 of 19)	303	NM_001184987	4717	Hs.84549	NM_002494	HPRD:11959	NDUFC1	KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa	protein-coding
19-PTNLD28-TUMOR_peak_60923	chr20	36623059	36623228	+	20.76496	NA	intron (NM_014657, intron 8 of 8)	intron (NM_014657, intron 8 of 8)	38690	NM_014657	9675	Hs.655481	NM_014657	HPRD:13799	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100453	chr8	123029682	123030007	+	20.75715	NA	Intergenic	L1PBa1|LINE|L1	-376214	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_101945	chr9	1574441	1574591	+	20.75715	NA	Intergenic	L1PA3|LINE|L1	-440703	NM_003070	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_4067	chr1	64485549	64485789	+	20.75715	NA	intron (NM_001083592, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	92219	NR_110666	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56801	chr2	167350761	167350935	+	20.75715	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-7367	NM_002976	6332	Hs.596087	NM_002976	HPRD:08355	SCN7A	NaG|Nav2.1|Nav2.2|SCN6A	sodium channel, voltage-gated, type VII, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_41176	chr17	35825251	35825409	+	20.75715	NA	intron (NM_001488, intron 10 of 15)	intron (NM_001488, intron 10 of 15)	-24621	NM_007026	11072	Hs.91448	NM_007026	HPRD:09427	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
19-PTNLD28-TUMOR_peak_41902	chr17	44750272	44750441	+	20.75715	NA	intron (NR_040116, intron 7 of 19)	intron (NR_040116, intron 7 of 19)	82256	NR_033799	728806	Hs.735097	NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_95743	chr7	138927847	138928011	+	20.75715	NA	intron (NM_173569, intron 2 of 17)	intron (NM_173569, intron 2 of 17)	11698	NM_173569	254048	Hs.153458	NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
19-PTNLD28-TUMOR_peak_60694	chr20	33814921	33815109	+	20.75715	NA	intron (NM_006690, intron 1 of 8)	CpG	476	NM_006690	10893	Hs.715494	NM_006690	HPRD:05338	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_66552	chr3	10689902	10690137	+	20.75715	NA	Intergenic	L2c|LINE|L2	-21527	NR_046766	100874325	Hs.143004	NR_046766		ATP2B2-IT2	-	ATP2B2 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_38318	chr16	67280397	67280850	+	20.75529	NA	intron (NM_013241, intron 1 of 21)	CpG	802	NM_013241	29109	Hs.95231	NM_013241	HPRD:06049	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16228	chr10	129704989	129705389	+	20.75146	NA	promoter-TSS (NM_006504)	promoter-TSS (NM_006504)	-136	NM_006504	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_66951	chr3	16281830	16282008	+	20.75146	NA	Intergenic	Intergenic	24577	NM_001047434	285381	Hs.388087	NM_206831		DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
19-PTNLD28-TUMOR_peak_9170	chr1	201012099	201012287	+	20.75146	NA	intron (NM_000069, intron 40 of 43)	intron (NM_000069, intron 40 of 43)	-19365	NM_001252102	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19-PTNLD28-TUMOR_peak_51046	chr2	10231380	10231739	+	20.75085	NA	Intergenic	LTR12C|LTR|ERV1	-11021	NM_001037160	192668	Hs.27092	NM_001037160	HPRD:18744	CYS1	-	cystin 1	protein-coding
19-PTNLD28-TUMOR_peak_94967	chr7	120418988	120419344	+	20.75085	NA	Intergenic	HERVH-int|LTR|ERV1	79011	NM_012338	23554	Hs.16529	NM_012338	HPRD:15509	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
19-PTNLD28-TUMOR_peak_63364	chr21	36666406	36667210	+	20.74415	NA	Intergenic	Intergenic	-245213	NM_001754	861	Hs.149261	NM_001754	HPRD:01043	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_37266	chr16	30758777	30758935	+	20.72895	NA	promoter-TSS (NM_001172432)	promoter-TSS (NM_001172432)	-764	NM_001172432	5261	Hs.65735	NM_000294	HPRD:01405	PHKG2	GSD9C	phosphorylase kinase, gamma 2 (testis)	protein-coding
19-PTNLD28-TUMOR_peak_13358	chr10	46947242	46947482	+	20.72895	NA	Intergenic	LTR78B|LTR|ERV1	23239	NM_031912	83849	Hs.696346	NM_031912	HPRD:12161	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
19-PTNLD28-TUMOR_peak_622	chr1	9621646	9621934	+	20.72442	NA	intron (NM_032315, intron 2 of 6)	intron (NM_032315, intron 2 of 6)	22262	NM_032315	84275	Hs.568613	NM_032315		SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 (pyrimidine nucleotide carrier), member 33	protein-coding
19-PTNLD28-TUMOR_peak_10328	chr1	223998404	223998572	+	20.72442	NA	intron (NM_001031685, intron 3 of 17)	intron (NM_001031685, intron 3 of 17)	35186	NM_001031685	7159	Hs.523968	NM_005426	HPRD:11803	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_75062	chr4	40910758	40910927	+	20.72442	NA	intron (NM_004307, intron 10 of 17)	intron (NM_004307, intron 10 of 17)	-51633	NM_001166053	323	Hs.479602	NM_004307	HPRD:04088	APBB2	FE65L|FE65L1	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28293	chr13	52371919	52372082	+	20.72442	NA	exon (NM_001270424, exon 3 of 10)	exon (NM_001270424, exon 3 of 10)	6298	NM_001031719	79758	Hs.266728	NM_024705	HPRD:07833	DHRS12	SDR40C1	dehydrogenase/reductase (SDR family) member 12	protein-coding
19-PTNLD28-TUMOR_peak_57067	chr2	175452346	175452611	+	20.72442	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-29678	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_42640	chr17	57449604	57450121	+	20.71039	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	6418	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	ncRNA
19-PTNLD28-TUMOR_peak_24421	chr12	53336569	53336744	+	20.71008	NA	intron (NM_001256293, intron 1 of 8)	intron (NM_001256293, intron 1 of 8)	-5999	NM_199187	3875	Hs.406013	NM_000224	HPRD:01020	KRT18	CYK18|K18	keratin 18	protein-coding
19-PTNLD28-TUMOR_peak_97308	chr8	16859030	16859489	+	20.70841	NA	exon (NM_019851, exon 1 of 3)	exon (NM_019851, exon 1 of 3)	415	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_76670	chr4	113848832	113848997	+	20.70841	NA	intron (NM_001127493, intron 2 of 46)	intron (NM_001127493, intron 2 of 46)	109675	NM_001127493	287	Hs.620557	NM_001148	HPRD:00110	ANK2	ANK-2|LQT4|brank-2	ankyrin 2, neuronal	protein-coding
19-PTNLD28-TUMOR_peak_4066	chr1	64472479	64472685	+	20.70841	NA	intron (NM_001083592, intron 1 of 6)	intron (NM_001083592, intron 1 of 6)	105306	NR_110666	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32534	chr15	22500141	22500493	+	20.70841	NA	Intergenic	Intergenic	-46248	NR_033735	646396	Hs.451294	NR_033735		REREP3	-	arginine-glutamic acid dipeptide (RE) repeats pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_49293	chr19	44598347	44598501	+	20.70841	NA	promoter-TSS (NM_013398)	promoter-TSS (NM_013398)	-58	NM_013398	7767	Hs.585869	NM_013398	HPRD:06094	ZNF224	BMZF-2|BMZF2|KOX22|ZNF255|ZNF27	zinc finger protein 224	protein-coding
19-PTNLD28-TUMOR_peak_33046	chr15	35598206	35598708	+	20.70841	NA	Intergenic	Intergenic	66108	NR_037507	100500904		NR_037507		MIR3942	-	microRNA 3942	ncRNA
19-PTNLD28-TUMOR_peak_14359	chr10	75716394	75716692	+	20.70841	NA	Intergenic	Intergenic	-34008	NM_001001791	414236	Hs.585453	NM_001001791	HPRD:16580	C10orf55	bA417O11.3	chromosome 10 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_102652	chr9	32723873	32724095	+	20.70841	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-59513	NM_212558	401498	Hs.522063	NM_212558		TMEM215	-	transmembrane protein 215	protein-coding
19-PTNLD28-TUMOR_peak_81727	chr5	118610101	118610297	+	20.70590	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	5812	NM_001286815	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_11372	chr1	244080593	244081063	+	20.70590	NA	non-coding (NR_033883, exon 1 of 12)	non-coding (NR_033883, exon 1 of 12)	124	NR_033883	339529	Hs.209374	NR_033883	ENSG00000226828	LOC339529	-	uncharacterized LOC339529	ncRNA
19-PTNLD28-TUMOR_peak_109088	chrX	106607989	106608109	+	20.70453	NA	Intergenic	L1PA2|LINE|L1	-157631	NM_032428	84443	Hs.496546	NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_15230	chr10	102193643	102193813	+	20.70453	NA	Intergenic	Intergenic	-29084	NM_003393	7479	Hs.421281	NM_003393	HPRD:03235	WNT8B	-	wingless-type MMTV integration site family, member 8B	protein-coding
19-PTNLD28-TUMOR_peak_91915	chr7	32742565	32742722	+	20.70453	NA	intron (NR_036680, intron 2 of 16)	L1PA2|LINE|L1	16137	NR_036680	100129460	Hs.633705	NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_12970	chr10	36689390	36689537	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	622233	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_89818	chr6	145337133	145337318	+	20.70453	NA	Intergenic	Intergenic	-718780	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
19-PTNLD28-TUMOR_peak_18780	chr11	59632647	59632789	+	20.70453	NA	intron (NM_001062, intron 1 of 8)	intron (NM_001062, intron 1 of 8)	1323	NM_001062	6947	Hs.2012	NM_001062	HPRD:01795	TCN1	HC|TC-1|TC1|TCI	transcobalamin I (vitamin B12 binding protein, R binder family)	protein-coding
19-PTNLD28-TUMOR_peak_108914	chrX	92840776	92840927	+	20.70453	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	87831	NM_004538	4675	Hs.21365	NM_004538	HPRD:02123	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_73009	chr3	187251634	187251920	+	20.70453	NA	Intergenic	Intergenic	136424	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_66914	chr3	15577393	15577535	+	20.70453	NA	Intergenic	Intergenic	-14206	NM_080539	8292	Hs.146735	NM_005677	HPRD:04328	COLQ	EAD	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_102469	chr9	21873969	21874119	+	20.70453	NA	Intergenic	Intergenic	71409	NM_002451	4507	Hs.193268	NM_002451	HPRD:01134	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
19-PTNLD28-TUMOR_peak_110292	chrY	14256021	14256156	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	277301	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_77561	chr4	151439848	151439999	+	20.70453	NA	intron (NM_006726, intron 41 of 57)	intron (NM_006726, intron 41 of 57)	-63154	NM_006439	10586	Hs.584852	NM_006439	HPRD:05075	MAB21L2	MCOPS14	mab-21-like 2 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_75504	chr4	60419553	60419725	+	20.70453	NA	Intergenic	Intergenic	-1943200	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_54754	chr2	109200492	109200682	+	20.70453	NA	intron (NM_001193483, intron 1 of 9)	intron (NM_001193483, intron 1 of 9)	-4170	NM_004987	3987	Hs.597715	NM_004987	HPRD:03978	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_23712	chr12	33380948	33381106	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	211727	NM_198992	341359	Hs.118703	NM_198992		SYT10	-	synaptotagmin X	protein-coding
19-PTNLD28-TUMOR_peak_97069	chr8	8775227	8775492	+	20.70453	NA	Intergenic	Intergenic	-24228	NM_004225	9258	Hs.379414	NM_004225	HPRD:12010	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
19-PTNLD28-TUMOR_peak_103339	chr9	45951386	45951561	+	20.70453	NA	Intergenic	LTR16B|LTR|ERVL	-165470	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_75588	chr4	69380914	69381118	+	20.70453	NA	Intergenic	L1PA2|LINE|L1	53229	NM_001077	7367	Hs.575083	NM_001077	HPRD:03545	UGT2B17	BMND12|UDPGT2B17	UDP glucuronosyltransferase 2 family, polypeptide B17	protein-coding
19-PTNLD28-TUMOR_peak_21264	chr11	113667476	113667630	+	20.70453	NA	Intergenic	Intergenic	17035	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
19-PTNLD28-TUMOR_peak_45172	chr18	32137731	32137936	+	20.70453	NA	intron (NM_032979, intron 1 of 16)	L1PA2|LINE|L1	-35449	NM_001198938	1837	Hs.643454	NM_001390	HPRD:03141	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_34316	chr15	71087752	71087913	+	20.70453	NA	Intergenic	Intergenic	-31982	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_88492	chr6	81233353	81233525	+	20.70453	NA	Intergenic	Intergenic	417095	NM_183050	594	Hs.654441	NM_000056	HPRD:02011	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_81232	chr5	95680596	95680715	+	20.70453	NA	Intergenic	Intergenic	87208	NM_001177875	5122	Hs.78977	NM_000439	HPRD:01201	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
19-PTNLD28-TUMOR_peak_9819	chr1	207713217	207713394	+	20.70453	NA	intron (NM_000651, intron 11 of 46)	intron (NM_000651, intron 11 of 46)	43832	NM_000573	1378	Hs.334019	NM_000573	HPRD:00398	CR1	C3BR|C4BR|CD35|KN	complement component (3b/4b) receptor 1 (Knops blood group)	protein-coding
19-PTNLD28-TUMOR_peak_40302	chr17	15732181	15732356	+	20.70453	NA	Intergenic	Intergenic	-11212	NR_110839	101928567	Hs.569757	NR_110839		LOC101928567	-	uncharacterized LOC101928567	ncRNA
19-PTNLD28-TUMOR_peak_52051	chr2	33202310	33202515	+	20.70453	NA	intron (NM_206943, intron 2 of 33)	L1PA15|LINE|L1	30043	NM_206943	4052	Hs.619315	NM_000627	HPRD:01039	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_33001	chr15	34447154	34447399	+	20.70453	NA	intron (NM_024713, intron 2 of 9)	LTR10A|LTR|ERV1	53002	NM_152595	161779	Hs.156317	NM_152595	HPRD:17839	PGBD4	-	piggyBac transposable element derived 4	protein-coding
19-PTNLD28-TUMOR_peak_89292	chr6	121483900	121484026	+	20.70453	NA	intron (NM_152730, intron 22 of 31)	L1HS|LINE|L1	171683	NR_104452	221322	Hs.121396	NM_152730	HPRD:12867	TBC1D32	BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	TBC1 domain family, member 32	protein-coding
19-PTNLD28-TUMOR_peak_5533	chr1	111948989	111949144	+	20.70453	NA	Intergenic	LTR41|LTR|ERVL	-16593	NR_029429	441897	Hs.568387	NR_029429	ENSG00000227179	PGCP1	-	progastricsin (pepsinogen C) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_28436	chr13	72754781	72755036	+	20.70453	NA	Intergenic	Intergenic	-313578	NM_004392	1602	Hs.129452	NM_004392	HPRD:16031	DACH1	DACH	dachshund family transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_85069	chr6	6367097	6367320	+	20.70453	NA	intron (NR_026970, intron 5 of 7)	intron (NR_026970, intron 5 of 7)	-46284	NM_000129	2162	Hs.335513	NM_000129	HPRD:00604	F13A1	F13A	coagulation factor XIII, A1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_99300	chr8	81161944	81162135	+	20.70453	NA	Intergenic	Intergenic	8415	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_63213	chr21	34199038	34199190	+	20.70453	NA	Intergenic	Intergenic	-13061	NM_019596	56245	Hs.517235	NM_019596		C21orf62	B37|C21orf120|PRED81	chromosome 21 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_93749	chr7	84373715	84373928	+	20.70453	NA	Intergenic	L1MEc|LINE|L1	212029	NR_110079	101927378	Hs.539042	NR_110079	ENSG00000235139	LOC101927378	-	uncharacterized LOC101927378	ncRNA
19-PTNLD28-TUMOR_peak_8288	chr1	173977151	173977298	+	20.70453	NA	Intergenic	Intergenic	-15014	NM_001300850	149041	Hs.30258	NM_172071	HPRD:13913	RC3H1	RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
19-PTNLD28-TUMOR_peak_69339	chr3	95424791	95425150	+	20.70453	NA	Intergenic	LTR12F|LTR|ERV1	-22933	NR_077228	100287639	Hs.591320	NR_077228	ENSG00000244681	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_36399	chr16	13960127	13960280	+	20.70453	NA	Intergenic	LTR16E1|LTR|ERVL	-53811	NM_005236	2072	Hs.567265	NM_005236	HPRD:00594	ERCC4	ERCC11|FANCQ|RAD1|XPF	excision repair cross-complementation group 4	protein-coding
19-PTNLD28-TUMOR_peak_5262	chr1	107163306	107163465	+	20.70453	NA	Intergenic	MER52A|LTR|ERV1	-435882	NM_018137	55170	Hs.26006	NM_018137	HPRD:10505	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_33008	chr15	34571637	34571843	+	20.70453	NA	intron (NM_001042495, intron 2 of 25)	intron (NM_001042495, intron 2 of 25)	39281	NM_005135	9990	Hs.510939	NM_005135		SLC12A6	ACCPN|KCC3|KCC3A|KCC3B	solute carrier family 12 (potassium/chloride transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_108549	chrX	63722530	63722662	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	-107263	NM_017677	55613	Hs.442892	NM_017677	HPRD:06664	MTMR8	-	myotubularin related protein 8	protein-coding
19-PTNLD28-TUMOR_peak_16295	chr10	132119709	132119850	+	20.70453	NA	Intergenic	LTR13|LTR|ERVK	185140	NM_001199868	10539	Hs.42644	NM_006541	HPRD:10153	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
19-PTNLD28-TUMOR_peak_23665	chr12	32213615	32213787	+	20.70453	NA	Intergenic	MER20B|DNA|hAT-Charlie	-46484	NM_001003398	636	Hs.505202	NM_001714	HPRD:03730	BICD1	BICD	bicaudal D homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_49415	chr19	46117622	46117770	+	20.70453	NA	intron (NM_001193268, intron 20 of 21)	intron (NM_001193268, intron 20 of 21)	-12230	NM_005282	2828	Hs.17170	NM_005282	HPRD:02773	GPR4	-	G protein-coupled receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_43119	chr17	66324843	66325127	+	20.70453	NA	intron (NM_001267727, intron 2 of 11)	intron (NM_001267727, intron 2 of 11)	37349	NM_001267727	22901	Hs.437249	NM_014960		ARSG	-	arylsulfatase G	protein-coding
19-PTNLD28-TUMOR_peak_25364	chr12	76160623	76160839	+	20.70453	NA	Intergenic	Intergenic	-255313	NM_007043	11103	Hs.645517	NM_007043	HPRD:11027	KRR1	HRB2|RIP-1	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_46122	chr18	61350504	61350644	+	20.70453	NA	Intergenic	Intergenic	-18964	NM_080475	89778	Hs.350958	NM_080475	HPRD:11547	SERPINB11	EPIPIN|SERPIN11	serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_85191	chr6	7892267	7892398	+	20.70453	NA	intron (NR_037616, intron 7 of 12)	L1MC5|LINE|L1	17978	NM_001145549	81567	Hs.150837	NM_022085	HPRD:18249	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
19-PTNLD28-TUMOR_peak_57346	chr2	184733542	184733784	+	20.70453	NA	Intergenic	Intergenic	-729430	NM_194250	91752	Hs.159528	NM_194250	HPRD:12804	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
19-PTNLD28-TUMOR_peak_79695	chr5	42889558	42889671	+	20.70453	NA	Intergenic	Intergenic	-77590	NM_001085486	6414	Hs.275775	NM_005410	HPRD:03286	SEPP1	SELP|SeP	selenoprotein P, plasma, 1	protein-coding
19-PTNLD28-TUMOR_peak_25405	chr12	78588289	78588463	+	20.70453	NA	intron (NM_001024383, intron 34 of 39)	intron (NM_001024383, intron 34 of 39)	363307	NM_014903	89795	Hs.655301	NM_014903	HPRD:10114	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding
19-PTNLD28-TUMOR_peak_35357	chr15	96313543	96313716	+	20.70453	NA	Intergenic	Intergenic	337307	NR_027133	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
19-PTNLD28-TUMOR_peak_99216	chr8	74432941	74433232	+	20.70453	NA	intron (NM_001164381, intron 12 of 13)	MLT1L|LTR|ERVL-MaLR	100777	NR_038406	100128126	Hs.679921	NR_038406	ENSG00000253302	STAU2-AS1	-	STAU2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4149	chr1	66719098	66719259	+	20.70453	NA	intron (NM_001297440, intron 3 of 15)	intron (NM_001297440, intron 3 of 15)	-78613	NM_001037339	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_69553	chr3	106530254	106530500	+	20.70453	NA	Intergenic	Intergenic	429108	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_24052	chr12	48431380	48431558	+	20.70453	NA	Intergenic	Intergenic	-33184	NM_033150	1280	Hs.408182	NM_001844	HPRD:00361	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen, type II, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_67508	chr3	36749162	36749380	+	20.70453	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	32081	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_57501	chr2	191895345	191895507	+	20.70453	NA	intron (NM_003151, intron 23 of 23)	intron (NM_003151, intron 23 of 23)	-16450	NM_139266	6772	Hs.642990	NM_007315	HPRD:02777	STAT1	CANDF7|ISGF-3|STAT91	signal transducer and activator of transcription 1, 91kDa	protein-coding
19-PTNLD28-TUMOR_peak_92095	chr7	39559583	39559746	+	20.70453	NA	Intergenic	Intergenic	-46311	NM_020192	57002	Hs.72168	NM_020192	HPRD:16669	YAE1D1	C7orf36	Yae1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_18527	chr11	48163191	48163332	+	20.70453	NA	intron (NM_002843, intron 11 of 24)	intron (NM_002843, intron 11 of 24)	-75101	NM_001005470	119765	Hs.553566	NM_001005470	HPRD:14960	OR4B1	OR11-106|OST208	olfactory receptor, family 4, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_38600	chr16	71284458	71284675	+	20.70453	NA	Intergenic	Intergenic	-19941	NM_001198543	54768	Hs.461229	NM_017558	HPRD:11042	HYDIN	CILD5|HYDIN1|HYDIN2|PPP1R31	HYDIN, axonemal central pair apparatus protein	protein-coding
19-PTNLD28-TUMOR_peak_94957	chr7	117951600	117951863	+	20.70453	NA	Intergenic	Intergenic	87019	NM_019644	56311	Hs.729340	NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
19-PTNLD28-TUMOR_peak_59676	chr20	5892257	5892449	+	20.70453	NA	intron (NM_001819, intron 1 of 4)	CpG	379	NM_001819	1114	Hs.516874	NM_001819	HPRD:07512	CHGB	SCG1	chromogranin B (secretogranin 1)	protein-coding
19-PTNLD28-TUMOR_peak_81087	chr5	89317087	89317286	+	20.70453	NA	Intergenic	Intergenic	-4649	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_17541	chr11	19092834	19093133	+	20.70453	NA	Intergenic	Intergenic	-10755	NM_054030	117194	Hs.350566	NM_054030	HPRD:06247	MRGPRX2	MGRG3|MRGX2	MAS-related GPR, member X2	protein-coding
19-PTNLD28-TUMOR_peak_9820	chr1	207731774	207731951	+	20.70453	NA	intron (NM_000651, intron 19 of 46)	intron (NM_000651, intron 19 of 46)	62389	NM_000573	1378	Hs.334019	NM_000573	HPRD:00398	CR1	C3BR|C4BR|CD35|KN	complement component (3b/4b) receptor 1 (Knops blood group)	protein-coding
19-PTNLD28-TUMOR_peak_17064	chr11	9944536	9944693	+	20.70453	NA	intron (NR_120539, intron 2 of 2)	LTR36|LTR|ERV1	83925	NR_120539	101928008	Hs.585524	NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
19-PTNLD28-TUMOR_peak_97165	chr8	11368436	11368603	+	20.70453	NA	intron (NM_001715, intron 1 of 12)	intron (NM_001715, intron 1 of 12)	16998	NM_001715	640	Hs.146591	NM_001715	HPRD:01866	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_46139	chr18	61646767	61646929	+	20.70453	NA	intron (NM_001031848, intron 2 of 6)	MER20|DNA|hAT-Charlie	9585	NM_198833	5271	Hs.368077	NM_002640	HPRD:03412	SERPINB8	CAP2|PI8	serpin peptidase inhibitor, clade B (ovalbumin), member 8	protein-coding
19-PTNLD28-TUMOR_peak_28396	chr13	62301945	62302141	+	20.70453	NA	Intergenic	Intergenic	301638	NR_046995	100874143	Hs.552684	NR_046995		LINC00358	-	long intergenic non-protein coding RNA 358	ncRNA
19-PTNLD28-TUMOR_peak_83544	chr5	158590495	158590617	+	20.70453	NA	intron (NM_001199382, intron 8 of 10)	intron (NM_001199382, intron 8 of 10)	44100	NM_001199382	153830	Hs.349306	NM_144726	HPRD:08113	RNF145	-	ring finger protein 145	protein-coding
19-PTNLD28-TUMOR_peak_98970	chr8	61936187	61936661	+	20.70453	NA	Intergenic	Intergenic	-56117	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_44282	chr18	2592758	2592924	+	20.70453	NA	intron (NM_006101, intron 10 of 16)	intron (NM_006101, intron 10 of 16)	21331	NM_006101	10403	Hs.414407	NM_006101	HPRD:06277	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
19-PTNLD28-TUMOR_peak_75603	chr4	71450311	71450593	+	20.70453	NA	Intergenic	Intergenic	-7523	NM_016519	258	Hs.272396	NM_016519	HPRD:03160	AMBN	-	ameloblastin (enamel matrix protein)	protein-coding
19-PTNLD28-TUMOR_peak_97152	chr8	11271339	11271487	+	20.70453	NA	intron (NR_026814, intron 3 of 6)	intron (NR_026814, intron 3 of 6)	45502	NR_026814	83656	Hs.583896	NM_054017	ENSG00000184608	C8orf12	-	chromosome 8 open reading frame 12	ncRNA
19-PTNLD28-TUMOR_peak_57300	chr2	182741379	182741680	+	20.70453	NA	Intergenic	L2a|LINE|L2	-14914	NM_001287504	6744	Hs.196983	NM_006751	HPRD:00353	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_40350	chr17	16905238	16905444	+	20.70453	NA	Intergenic	Intergenic	-29939	NM_012452	23495	Hs.158341	NM_012452	HPRD:05365	TNFRSF13B	CD267|CVID|CVID2|RYZN|TACI|TNFRSF14B	tumor necrosis factor receptor superfamily, member 13B	protein-coding
19-PTNLD28-TUMOR_peak_14526	chr10	80579875	80580046	+	20.70453	NA	Intergenic	Intergenic	247245	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93639	chr7	80146858	80147036	+	20.70453	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-5705	NM_001102386	346562	Hs.335049	NM_001102386	ENSG00000214415	GNAT3	GDCA	guanine nucleotide binding protein, alpha transducing 3	protein-coding
19-PTNLD28-TUMOR_peak_106454	chr9	133722947	133723196	+	20.70453	NA	intron (NM_005157, intron 1 of 10)	intron (NM_005157, intron 1 of 10)	12429	NM_005157	25	Hs.431048	NM_005157	HPRD:01809	ABL1	ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_13913	chr10	65459984	65460155	+	20.70453	NA	Intergenic	Intergenic	178946	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_23877	chr12	44223452	44223614	+	20.70453	NA	Intergenic	Intergenic	-6131	NM_001286211	84216	Hs.444668	NM_032256	HPRD:13193	TMEM117	-	transmembrane protein 117	protein-coding
19-PTNLD28-TUMOR_peak_62827	chr21	17039485	17039661	+	20.70453	NA	Intergenic	Intergenic	-62771	NM_013396	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_92573	chr7	51417890	51418141	+	20.70453	NA	Intergenic	Intergenic	-33500	NM_001287436	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_100157	chr8	115598016	115598175	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	1082144	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_44493	chr18	9454431	9454597	+	20.70453	NA	Intergenic	Intergenic	-21016	NM_006788	10928	Hs.528993	NM_006788	HPRD:09013	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82937	chr5	145041022	145041203	+	20.70453	NA	Intergenic	Intergenic	173820	NM_138492	153768	Hs.314261	NM_138492	HPRD:14479	PRELID2	-	PRELI domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_13688	chr10	55456839	55457077	+	20.70453	NA	Intergenic	Intergenic	-925498	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_43274	chr17	71559190	71559353	+	20.70453	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	80956	NM_001144952	54549	Hs.435719	NM_019064	HPRD:06239	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_18163	chr11	40295689	40295876	+	20.70453	NA	intron (NM_001258419, intron 4 of 6)	intron (NM_001258419, intron 4 of 6)	18898	NR_047674	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_67811	chr3	44754053	44754248	+	20.70453	NA	promoter-TSS (NM_033210)	promoter-TSS (NM_033210)	15	NM_001134441	91392	Hs.224843	NM_033210	HPRD:15810	ZNF502	-	zinc finger protein 502	protein-coding
19-PTNLD28-TUMOR_peak_72148	chr3	164078736	164079016	+	20.70453	NA	Intergenic	MER1B|DNA|hAT-Charlie	717407	NM_001041	6476	Hs.429596	NM_001041	HPRD:01962	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_81555	chr5	111828140	111828289	+	20.70453	NA	Intergenic	Intergenic	72934	NR_027706	54508	Hs.591264	NR_027706		EPB41L4A-AS2	-	EPB41L4A antisense RNA 2 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_98146	chr8	36347769	36348021	+	20.70453	NA	Intergenic	L1PA2|LINE|L1	-293947	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_62096	chr20	52621059	52621277	+	20.70453	NA	intron (NM_003657, intron 4 of 11)	intron (NM_003657, intron 4 of 11)	63856	NR_039913	100616225		NR_039913	miRBase:MI0017397	MIR4756	-	microRNA 4756	ncRNA
19-PTNLD28-TUMOR_peak_66786	chr3	14004755	14004932	+	20.70453	NA	intron (NR_002223, intron 1 of 2)	LTR10A|LTR|ERV1	26036	NR_002223	348825	Hs.529180	NR_002223	ENSG00000180438	TPRXL	-	tetra-peptide repeat homeobox-like	pseudo
19-PTNLD28-TUMOR_peak_8106	chr1	169515775	169515892	+	20.70453	NA	intron (NM_000130, intron 10 of 24)	intron (NM_000130, intron 10 of 24)	39936	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
19-PTNLD28-TUMOR_peak_57253	chr2	180715019	180715212	+	20.70453	NA	intron (NM_152520, intron 1 of 9)	L3|LINE|CR1	10520	NR_031659	100302172		NR_031659	miRBase:MI0006392	MIR1258	MIRN1258|hsa-mir-1258	microRNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_25557	chr12	91248235	91248495	+	20.70453	NA	Intergenic	Intergenic	-63435	NR_038868	439916	Hs.350600	NM_001039384	ENSG00000196243	LINC00615	C12orf37	long intergenic non-protein coding RNA 615	ncRNA
19-PTNLD28-TUMOR_peak_104616	chr9	95650356	95650508	+	20.70453	NA	non-coding (NR_111003, exon 4 of 4)	non-coding (NR_111003, exon 4 of 4)	5583	NR_111003	642943	Hs.643602	NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_77462	chr4	147143564	147143735	+	20.70453	NA	Intergenic	Intergenic	46814	NM_007080	11157	Hs.190520	NM_007080	HPRD:06286	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_103549	chr9	69114299	69114491	+	20.70453	NA	intron (NR_002836, intron 4 of 8)	intron (NR_002836, intron 4 of 8)	33459	NR_002836	595135	Hs.571593	NR_002836	ENSG00000227558	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_24208	chr12	50966167	50966303	+	20.70453	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	67467	NM_173602	57609	Hs.505516	NM_020849	HPRD:08751	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_23231	chr12	14989257	14989429	+	20.70453	NA	intron (NM_021071, intron 2 of 2)	MER44C|DNA|TcMar-Tigger	7070	NM_021071	420	Hs.591158	NM_021071		ART4	ARTC4|CD297|DO|DOK1	ADP-ribosyltransferase 4 (Dombrock blood group)	protein-coding
19-PTNLD28-TUMOR_peak_79925	chr5	54711004	54711170	+	20.70453	NA	intron (NM_015360, intron 24 of 26)	L1PREC2|LINE|L1	93667	NR_049869	100847019		NR_049869		MIR5687	-	microRNA 5687	ncRNA
19-PTNLD28-TUMOR_peak_101878	chr9	385960	386130	+	20.70453	NA	intron (NM_001190458, intron 21 of 45)	intron (NM_001190458, intron 21 of 45)	-84249	NM_001256876	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_102063	chr9	5186557	5186677	+	20.70453	NA	promoter-TSS (NM_007179)	promoter-TSS (NM_007179)	-999	NM_007179	11172	Hs.632648	NM_007179	HPRD:08401	INSL6	RIF1	insulin-like 6	protein-coding
19-PTNLD28-TUMOR_peak_31722	chr14	92463489	92463706	+	20.70453	NA	intron (NM_004239, intron 13 of 20)	intron (NM_004239, intron 13 of 20)	42806	NM_004239	9321	Hs.632339	NM_004239	HPRD:05143	TRIP11	ACG1A|CEV14|GMAP-210|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
19-PTNLD28-TUMOR_peak_13499	chr10	49614446	49614604	+	20.70453	NA	intron (NM_139049, intron 2 of 10)	intron (NM_139049, intron 2 of 10)	4870	NM_001278548	5599	Hs.138211	NM_002750	HPRD:03100	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_31572	chr14	86546295	86546438	+	20.70453	NA	intron (NR_110155, intron 2 of 3)	L1PA3|LINE|L1	145344	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA
19-PTNLD28-TUMOR_peak_82372	chr5	136021984	136022206	+	20.70453	NA	Intergenic	L1PA15-16|LINE|L1	-320931	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_49287	chr19	44488177	44488396	+	20.70453	NA	promoter-TSS (NM_001260488)	promoter-TSS (NM_001260488)	-36	NM_001260487	7711	Hs.279567	NM_003445	HPRD:04969	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
19-PTNLD28-TUMOR_peak_58256	chr2	215854030	215854187	+	20.70453	NA	non-coding (NR_103740, exon 28 of 55)	non-coding (NR_103740, exon 28 of 55)	42702	NM_015657	26154	Hs.134585	NM_015657	HPRD:07416	ABCA12	ARCI4A|ARCI4B|ICR2B|LI2	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
19-PTNLD28-TUMOR_peak_100156	chr8	115516712	115516840	+	20.70453	NA	Intergenic	L1PA2|LINE|L1	-1067534	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_29328	chr14	20999209	20999368	+	20.70453	NA	Intergenic	Intergenic	20657	NM_001012975	338879	Hs.451057	NM_001012975	HPRD:18495	RNASE10	RAH1|RNASE9	ribonuclease, RNase A family, 10 (non-active)	protein-coding
19-PTNLD28-TUMOR_peak_20807	chr11	100607048	100607280	+	20.70453	NA	intron (NM_152432, intron 1 of 23)	intron (NM_152432, intron 1 of 23)	48757	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_61165	chr20	41703973	41704116	+	20.70453	NA	intron (NM_133170, intron 1 of 31)	intron (NM_133170, intron 1 of 31)	114513	NM_007050	11122	Hs.526879	NM_007050	HPRD:06690	PTPRT	RPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding
19-PTNLD28-TUMOR_peak_62820	chr21	16922123	16922299	+	20.70453	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-180133	NM_013396	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_89802	chr6	144479367	144479529	+	20.70453	NA	intron (NM_003764, intron 1 of 1)	intron (NM_003764, intron 1 of 1)	7794	NM_003764	8676	Hs.118958	NM_003764		STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
19-PTNLD28-TUMOR_peak_9090	chr1	199092135	199092333	+	20.70453	NA	Intergenic	Intergenic	-104141	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
19-PTNLD28-TUMOR_peak_76293	chr4	95078448	95078581	+	20.70453	NA	Intergenic	SVA_F|Other|Other	-50245	NM_001128430	56916	Hs.410406	NM_020159	HPRD:11586	SMARCAD1	ADERM|ETL1|HEL1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
19-PTNLD28-TUMOR_peak_52282	chr2	39923237	39923482	+	20.70453	NA	intron (NM_152390, intron 1 of 3)	intron (NM_152390, intron 1 of 3)	30324	NM_152390	130733	Hs.40808	NM_152390	HPRD:14577	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
19-PTNLD28-TUMOR_peak_27539	chr13	26307220	26307359	+	20.70453	NA	intron (NM_016529, intron 25 of 36)	intron (NM_016529, intron 25 of 36)	317909	NM_001007538	387914	Hs.433791	NM_001007538	HPRD:16589	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
19-PTNLD28-TUMOR_peak_31842	chr14	94878088	94878316	+	20.70453	NA	Intergenic	LTR41|LTR|ERVL	-21173	NM_001127706	5265	Hs.525557	NM_000295	HPRD:02463	SERPINA1	A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1	protein-coding
19-PTNLD28-TUMOR_peak_1080	chr1	16581118	16581338	+	20.70453	NA	intron (NM_018994, intron 6 of 9)	intron (NM_018994, intron 6 of 9)	-17569	NM_030907	79363	Hs.546430	NM_030907	HPRD:14399	RSG1	C1orf89	REM2 and RAB-like small GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_107850	chrX	26280274	26280483	+	20.70453	NA	Intergenic	LTR39|LTR|ERV1	46092	NM_001271752	347541	Hs.224079	NM_001271752	ENSG00000188408	MAGEB5	CT3.3|MAGE-B5	melanoma antigen family B, 5	protein-coding
19-PTNLD28-TUMOR_peak_108775	chrX	74452267	74452399	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	-41561	NM_145052	139596	Hs.91612	NM_145052	HPRD:06640	UPRT	FUR1|UPP	uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_29676	chr14	28142682	28142872	+	20.70453	NA	Intergenic	L1PA3|LINE|L1	60983	NR_039992	100505967	Hs.668484	NR_039992	ENSG00000258548	LINC00645	-	long intergenic non-protein coding RNA 645	ncRNA
19-PTNLD28-TUMOR_peak_20794	chr11	100417533	100417656	+	20.70453	NA	Intergenic	MER91B|DNA|hAT-Tip100	-140813	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_107560	chrX	12719853	12720027	+	20.70453	NA	intron (NM_014728, intron 9 of 16)	intron (NM_014728, intron 9 of 16)	-89534	NM_002765	5634	Hs.654581	NM_002765	HPRD:02414	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
19-PTNLD28-TUMOR_peak_12590	chr10	28048855	28049064	+	20.70453	NA	intron (NR_121652, intron 1 of 1)	intron (NR_121652, intron 1 of 1)	-14181	NM_173576	283078	Hs.128193	NM_173576	HPRD:12577	MKX	C10orf48|IFRX|IRXL1	mohawk homeobox	protein-coding
19-PTNLD28-TUMOR_peak_25097	chr12	67456031	67456264	+	20.70453	NA	Intergenic	Intergenic	33917	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_91268	chr7	9069367	9069626	+	20.70453	NA	Intergenic	Intergenic	595911	NM_152745	30010	Hs.487564	NM_152745	HPRD:06867	NXPH1	NPH1	neurexophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_52083	chr2	35773419	35773597	+	20.70453	NA	Intergenic	Intergenic	809205	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_85044	chr6	5644827	5645050	+	20.70453	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	50567	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
19-PTNLD28-TUMOR_peak_84052	chr5	172756080	172756292	+	20.70453	NA	5' UTR (NM_003714, exon 1 of 4)	5' UTR (NM_003714, exon 1 of 4)	320	NM_003714	8614	Hs.233160	NM_003714	HPRD:04717	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
19-PTNLD28-TUMOR_peak_5835	chr1	117239328	117239518	+	20.70453	NA	intron (NM_001013643, intron 2 of 3)	intron (NM_001013643, intron 2 of 3)	2689	NM_001013643	388667	Hs.127851	NM_001013643	HPRD:18385	C1orf137	-	chromosome 1 open reading frame 137	protein-coding
19-PTNLD28-TUMOR_peak_7477	chr1	158553844	158554018	+	20.70453	NA	Intergenic	Intergenic	-4242	NM_001004477	128367	Hs.553589	NM_001004477	HPRD:14897	OR10X1	OR1-13|OR1-14|OR10X1P	olfactory receptor, family 10, subfamily X, member 1	protein-coding
19-PTNLD28-TUMOR_peak_107393	chrX	2944265	2944513	+	20.70453	NA	intron (NM_001011719, intron 6 of 8)	intron (NM_001011719, intron 6 of 8)	-13886	NM_001201538	416	Hs.101674	NM_004042	HPRD:02049	ARSF	ASF	arylsulfatase F	protein-coding
19-PTNLD28-TUMOR_peak_76989	chr4	126650860	126651011	+	20.70453	NA	Intergenic	AluJo|SINE|Alu	222521	NR_031746	100302267		NR_031746		MIR2054	hsa-mir-2054	microRNA 2054	ncRNA
19-PTNLD28-TUMOR_peak_73163	chr3	189806851	189807076	+	20.70453	NA	intron (NM_001134418, intron 1 of 14)	L1PA5|LINE|L1	31945	NM_018192	55214	Hs.374191	NM_018192	HPRD:17270	LEPREL1	MCVD|MLAT4|P3H2	leprecan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_56145	chr2	145341810	145341952	+	20.70453	NA	Intergenic	Intergenic	62446	NR_110570	101928455	Hs.333693	NR_110570	ENSG00000232606	LINC01412	-	long intergenic non-protein coding RNA 1412	ncRNA
19-PTNLD28-TUMOR_peak_11589	chr10	228481	228733	+	20.70453	NA	intron (NM_001202467, intron 1 of 11)	intron (NM_001202467, intron 1 of 11)	2673	NM_001202468	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_81370	chr5	102014084	102014258	+	20.70453	NA	Intergenic	Intergenic	-7003	NR_103753	285708	Hs.533011	NR_103753		LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA
19-PTNLD28-TUMOR_peak_80106	chr5	58779862	58780035	+	20.70453	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	102376	NM_006203	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_89842	chr6	146920020	146920171	+	20.70453	NA	promoter-TSS (NM_024694)	promoter-TSS (NM_024694)	-41	NM_024694	79747	Hs.720870	NM_024694	ENSG00000118492	ADGB	C6orf103	androglobin	protein-coding
19-PTNLD28-TUMOR_peak_53986	chr2	88337863	88338079	+	20.70453	NA	intron (NM_016618, intron 1 of 3)	LTR80A|LTR|ERVL	17277	NM_016618	51315	Hs.469254	NM_016618	HPRD:11269	KRCC1	CHBP2	lysine-rich coiled-coil 1	protein-coding
19-PTNLD28-TUMOR_peak_10085	chr1	218847766	218848066	+	20.70453	NA	Intergenic	Intergenic	231948	NR_125715	103611157	Hs.133379	NR_125715		TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_94007	chr7	94578894	94579131	+	20.70453	NA	intron (NM_017650, intron 2 of 15)	intron (NM_017650, intron 2 of 15)	39802	NM_001166161	55607	Hs.21816	NM_017650	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	protein phosphatase 1, regulatory subunit 9A	protein-coding
19-PTNLD28-TUMOR_peak_75437	chr4	57666388	57666580	+	20.70453	NA	Intergenic	Intergenic	21155	NR_073417	6691	Hs.98243	NM_021114	HPRD:10422	SPINK2	HUSI-II	serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)	protein-coding
19-PTNLD28-TUMOR_peak_20866	chr11	102450881	102451246	+	20.70453	NA	intron (NM_004771, intron 8 of 9)	intron (NM_004771, intron 8 of 9)	45000	NM_004771	9313	Hs.591946	NM_004771	HPRD:05218	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
19-PTNLD28-TUMOR_peak_77110	chr4	135549340	135549494	+	20.70453	NA	Intergenic	Intergenic	-426514	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_106545	chr9	135777338	135777588	+	20.70453	NA	intron (NM_001162427, intron 17 of 21)	MER119|DNA|hAT-Charlie	23173	NM_018956	11092	Hs.62595	NM_018956	HPRD:12986	C9orf9	-	chromosome 9 open reading frame 9	protein-coding
19-PTNLD28-TUMOR_peak_106501	chr9	134631100	134631240	+	20.70453	NA	Intergenic	Intergenic	-18245	NM_005312	2889	Hs.127897	NM_005312	HPRD:02627	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_103323	chr9	45565140	45565315	+	20.70453	NA	Intergenic	LTR16B|LTR|ERVL	-551716	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_99666	chr8	99466469	99466687	+	20.70453	NA	TTS (NM_001256313)	TTS (NM_001256313)	27328	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_75342	chr4	54809932	54810105	+	20.70453	NA	Intergenic	Intergenic	43431	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
19-PTNLD28-TUMOR_peak_10674	chr1	228881356	228881535	+	20.70453	NA	non-coding (NR_037962, exon 3 of 3)	non-coding (NR_037962, exon 3 of 3)	10621	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_17556	chr11	19254530	19254707	+	20.70453	NA	intron (NM_001256372, intron 6 of 12)	intron (NM_001256372, intron 6 of 12)	7889	NM_024680	79733	Hs.523526	NM_024680	HPRD:10981	E2F8	E2F-8	E2F transcription factor 8	protein-coding
19-PTNLD28-TUMOR_peak_109396	chrX	127154814	127155005	+	20.70453	NA	Intergenic	Intergenic	31473	NM_138289	139741	Hs.680125	NM_138289	HPRD:06439	ACTRT1	AIP1|ARIP1|ARPT1|HSD27	actin-related protein T1	protein-coding
19-PTNLD28-TUMOR_peak_17362	chr11	14358747	14358963	+	20.70453	NA	intron (NM_001177314, intron 1 of 5)	MER44D|DNA|TcMar-Tigger	21176	NM_001177315	22800	Hs.502004	NM_012250	HPRD:02518	RRAS2	TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
19-PTNLD28-TUMOR_peak_83877	chr5	170236702	170236837	+	20.70453	NA	intron (NM_014211, intron 9 of 9)	intron (NM_014211, intron 9 of 9)	26046	NM_014211	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_51399	chr2	19378050	19378252	+	20.70453	NA	Intergenic	MIR3|SINE|MIR	-170039	NR_039914	100616307		NR_039914	miRBase:MI0017398	MIR4757	-	microRNA 4757	ncRNA
19-PTNLD28-TUMOR_peak_81504	chr5	110287041	110287241	+	20.70453	NA	Intergenic	Intergenic	-118637	NR_045089	85480	Hs.389874	NM_033035	HPRD:06108	TSLP	-	thymic stromal lymphopoietin	protein-coding
19-PTNLD28-TUMOR_peak_59663	chr20	5344992	5345342	+	20.70453	NA	Intergenic	MER72|LTR|ERV1	-50152	NM_144773	128674	Hs.375029	NM_144773	HPRD:08453	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_72658	chr3	182401434	182401626	+	20.70453	NA	Intergenic	Intergenic	-109761	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_104701	chr9	97365678	97365843	+	20.70453	NA	exon (NM_000507, exon 7 of 7)	exon (NM_000507, exon 7 of 7)	-9646	NM_003837	8789	Hs.61255	NM_003837	HPRD:04322	FBP2	-	fructose-1,6-bisphosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_34167	chr15	68549122	68549706	+	20.69407	NA	Intergenic	MER45C|DNA|hAT-Tip100	-20727	NM_015322	10116	Hs.362733	NM_015322		FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog b (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_85312	chr6	11044325	11044608	+	20.67818	NA	promoter-TSS (NR_038962)	promoter-TSS (NR_038962)	158	NM_017770	54898	Hs.656436	NM_017770	HPRD:16857	ELOVL2	SSC2	ELOVL fatty acid elongase 2	protein-coding
19-PTNLD28-TUMOR_peak_28025	chr13	43467611	43467830	+	20.67818	NA	intron (NM_001002264, intron 11 of 12)	intron (NM_001002264, intron 11 of 12)	-81022	NR_125747	103689845	Hs.422131	NR_125747		LINC01050	-	long intergenic non-protein coding RNA 1050	ncRNA
19-PTNLD28-TUMOR_peak_44234	chr18	976290	976826	+	20.67818	NA	Intergenic	L1PA3|LINE|L1	71361	NM_001117	116	Hs.531719	NM_001117	HPRD:02369	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
19-PTNLD28-TUMOR_peak_61429	chr20	44980107	44980526	+	20.67445	NA	intron (NM_001281458, intron 9 of 10)	MER117|DNA|hAT-Charlie	12781	NM_015945	51006	Hs.593344	NM_015945	HPRD:15371	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 (GDP-fucose transporter), member C2	protein-coding
19-PTNLD28-TUMOR_peak_97765	chr8	26231606	26231853	+	20.66726	NA	Intergenic	AluJo|SINE|Alu	-8794	NM_004331	665	Hs.131226	NM_004331	HPRD:07288	BNIP3L	BNIP3a|NIX	BCL2/adenovirus E1B 19kDa interacting protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_56630	chr2	161431362	161431584	+	20.66726	NA	Intergenic	L2b|LINE|L2	-81155	NM_002897	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59834	chr20	11788146	11788296	+	20.66726	NA	Intergenic	L1ME1|LINE|L1	63142	NR_110635	728450	Hs.560990	NR_110635		LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
19-PTNLD28-TUMOR_peak_30694	chr14	62304384	62304579	+	20.66726	NA	Intergenic	Intergenic	75406	NM_003082	6617	Hs.179312	NM_003082	HPRD:08998	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex, polypeptide 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_24604	chr12	55495447	55495696	+	20.66726	NA	Intergenic	L1HS|LINE|L1	-27982	NM_001005243	441639	Hs.553827	NM_001005243	HPRD:15090	OR9K2	OR12-2	olfactory receptor, family 9, subfamily K, member 2	protein-coding
19-PTNLD28-TUMOR_peak_71639	chr3	149313985	149314318	+	20.66726	NA	intron (NM_015472, intron 2 of 6)	intron (NM_015472, intron 2 of 6)	61661	NM_001168280	25937	Hs.477921	NM_015472	HPRD:09580	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_63945	chr21	45717648	45717851	+	20.66461	NA	3' UTR (NM_000383, exon 14 of 14)	3' UTR (NM_000383, exon 14 of 14)	-2168	NM_002626	5211	Hs.255093	NM_002626	HPRD:01385	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver	protein-coding
19-PTNLD28-TUMOR_peak_21726	chr11	122395008	122395167	+	20.65781	NA	Intergenic	Intergenic	-131311	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_6582	chr1	149250640	149250974	+	20.65781	NA	Intergenic	Intergenic	-36323	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
19-PTNLD28-TUMOR_peak_87172	chr6	37094142	37094306	+	20.65781	NA	Intergenic	Intergenic	-43698	NM_002648	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_96015	chr7	142711133	142711274	+	20.64469	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	13016	NM_001001658	135924	Hs.553594	NM_001001658	HPRD:15088	OR9A2	-	olfactory receptor, family 9, subfamily A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_73395	chr3	194313870	194314056	+	20.64192	NA	intron (NM_138399, intron 9 of 10)	intron (NM_138399, intron 9 of 10)	8966	NR_047573	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61711	chr20	48315931	48316110	+	20.63604	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	14401	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_3159	chr1	45814671	45815433	+	20.63104	NA	intron (NM_007170, intron 5 of 10)	intron (NM_007170, intron 5 of 10)	-8910	NM_001048171	4595	Hs.271353	NM_012222	HPRD:05380	MUTYH	MYH	mutY homolog	protein-coding
19-PTNLD28-TUMOR_peak_23653	chr12	31926812	31927116	+	20.62971	NA	Intergenic	Intergenic	18211	NM_001013699	440093	Hs.448697	NM_001013699	HPRD:18443	H3F3C	H3.5	H3 histone, family 3C	protein-coding
19-PTNLD28-TUMOR_peak_78779	chr5	7816421	7816623	+	20.62802	NA	intron (NM_020546, intron 22 of 24)	LTR33|LTR|ERVL	35081	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_26047	chr12	106812443	106812581	+	20.62802	NA	intron (NM_001160708, intron 12 of 27)	intron (NM_001160708, intron 12 of 27)	60652	NM_001160708	55703	Hs.62696	NM_018082	HPRD:11447	POLR3B	C128|HLD8|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
19-PTNLD28-TUMOR_peak_5936	chr1	119544763	119544922	+	20.62802	NA	Intergenic	Intergenic	-12663	NM_152380	6913	Hs.146196	NM_152380	HPRD:16035	TBX15	TBX14	T-box 15	protein-coding
19-PTNLD28-TUMOR_peak_6418	chr1	146672952	146673118	+	20.62763	NA	exon (NM_001144829, exon 7 of 9)	exon (NM_001144829, exon 7 of 9)	23605	NR_002305	171423	Hs.658566	NR_002305		PDIA3P1	ERp60|GRP58P|PDIA3P	protein disulfide isomerase family A, member 3 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_23588	chr12	29949857	29950053	+	20.62763	NA	Intergenic	Intergenic	-12263	NM_175861	83857	Hs.401954	NM_175861	HPRD:12472	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_98106	chr8	32962373	32962716	+	20.62763	NA	Intergenic	Intergenic	368120	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_27456	chr13	24001617	24001879	+	20.62763	NA	non-coding (NR_103450, exon 2 of 2)	non-coding (NR_103450, exon 2 of 2)	6119	NM_014363	26278	Hs.159492	NM_014363	HPRD:05135	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
19-PTNLD28-TUMOR_peak_35267	chr15	92249689	92249906	+	20.62763	NA	Intergenic	Intergenic	-147141	NM_001145044	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_5155	chr1	100140272	100140491	+	20.62763	NA	intron (NM_017734, intron 3 of 7)	intron (NM_017734, intron 3 of 7)	-14230	NR_037516	100500863		NR_037516	miRBase:MI0016689	MIR548AA1	-	microRNA 548aa-1	ncRNA
19-PTNLD28-TUMOR_peak_8617	chr1	181135799	181135986	+	20.62763	NA	Intergenic	Intergenic	-69632	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_9477	chr1	203829531	203829729	+	20.62688	NA	Intergenic	MIRb|SINE|MIR	-1110	NM_003094	6635	Hs.334612	NM_003094		SNRPE	B-raf|HYPT11|SME|Sm-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
19-PTNLD28-TUMOR_peak_19491	chr11	67182680	67182815	+	20.61807	NA	promoter-TSS (NM_020811)	promoter-TSS (NM_020811)	-402	NM_020811	57571	Hs.502982	NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_86792	chr6	33048421	33048646	+	20.60929	NA	promoter-TSS (NM_001242525).2	promoter-TSS (NM_001242525).2	22	NM_001242524	3113	Hs.347270	NM_033554	HPRD:00835	HLA-DPA1	DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_83743	chr5	167828285	167828534	+	20.60399	NA	intron (NM_015238, intron 5 of 22)	intron (NM_015238, intron 5 of 22)	-85054	NM_002887	5917	Hs.654907	NM_002887	HPRD:00142	RARS	ArgRS|DALRD1	arginyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_29384	chr14	21572488	21572861	+	20.59752	NA	TTS (NM_001146683)	TTS (NM_001146683)	189	NM_001102454	51222	Hs.250493	NM_016423	HPRD:05435	ZNF219	ZFP219	zinc finger protein 219	protein-coding
19-PTNLD28-TUMOR_peak_35362	chr15	96807620	96807829	+	20.58991	NA	intron (NR_125738, intron 2 of 4)	MER5A|DNA|hAT-Charlie	-61433	NM_001145155	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_56064	chr2	140051731	140051996	+	20.58991	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	396969	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_107141	chrUn_gl000223	149540	149799	+	20.58991	NA	Intergenic	Intergenic	-29939	NM_001256280	7574	Hs.489608	NM_019591	HPRD:01922	ZNF26	HEL-179|KOX20	zinc finger protein 26	protein-coding
19-PTNLD28-TUMOR_peak_94707	chr7	105817097	105817518	+	20.58991	NA	Intergenic	Intergenic	-64214	NM_006754	6856	Hs.80919	NM_006754	HPRD:15459	SYPL1	H-SP1|SYPL	synaptophysin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_28269	chr13	51820807	51821193	+	20.58239	NA	intron (NM_145019, intron 3 of 4)	intron (NM_145019, intron 3 of 4)	24530	NM_145019	220108	Hs.71913	NM_145019	HPRD:08704	FAM124A	-	family with sequence similarity 124A	protein-coding
19-PTNLD28-TUMOR_peak_9258	chr1	201708701	201709172	+	20.58239	NA	promoter-TSS (NM_001167738)	promoter-TSS (NM_001167738)	-27	NM_001167738	89796	Hs.585374	NM_020443	HPRD:10113	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
19-PTNLD28-TUMOR_peak_88891	chr6	100744726	100745013	+	20.57848	NA	Intergenic	L2a|LINE|L2	166682	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_31681	chr14	91553879	91554136	+	20.57705	NA	Intergenic	LTR10C|LTR|ERV1	-26350	NM_024952	80017	Hs.309849	NM_024952	HPRD:16612	C14orf159	-	chromosome 14 open reading frame 159	protein-coding
19-PTNLD28-TUMOR_peak_47377	chr19	11973152	11973384	+	20.57705	NA	Intergenic	L1MC|LINE|L1	-3576	NM_152262	90594	Hs.528731	NM_152262	HPRD:11717	ZNF439	-	zinc finger protein 439	protein-coding
19-PTNLD28-TUMOR_peak_69444	chr3	100237939	100238146	+	20.57705	NA	intron (NM_018004, intron 1 of 5)	intron (NM_018004, intron 1 of 5)	26579	NM_018004	55076	Hs.658956	NM_018004	HPRD:07647	TMEM45A	DERP7	transmembrane protein 45A	protein-coding
19-PTNLD28-TUMOR_peak_59456	chr20	1741861	1742049	+	20.57705	NA	Intergenic	MER21B|LTR|ERVL	18437	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_14439	chr10	78063516	78063758	+	20.57705	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	521118	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_76182	chr4	88263505	88263676	+	20.57705	NA	intron (NM_016245, intron 5 of 6)	FLAM_C|SINE|Alu	-19532	NM_178135	345275	Hs.284414	NM_178135	HPRD:18023	HSD17B13	NIIL497|SCDR9|SDR16C3	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding
19-PTNLD28-TUMOR_peak_67581	chr3	38521422	38521567	+	20.57705	NA	intron (NM_001106, intron 7 of 10)	intron (NM_001106, intron 7 of 10)	-16269	NM_005107	9941	Hs.517897	NM_005107	HPRD:06813	EXOG	ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding
19-PTNLD28-TUMOR_peak_69043	chr3	72836915	72837090	+	20.57705	NA	intron (NM_018130, intron 10 of 10)	SVA_B|Other|Other	60596	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_103997	chr9	80071821	80071995	+	20.57705	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	9343	NR_121184	101927422	Hs.434324	NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53036	chr2	63948888	63949049	+	20.57705	NA	Intergenic	SVA_F|Other|Other	-119130	NM_001001521	7360	Hs.516217	NM_006759	HPRD:08934	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
19-PTNLD28-TUMOR_peak_96676	chr7	156561891	156562155	+	20.57705	NA	intron (NM_022458, intron 5 of 16)	intron (NM_022458, intron 5 of 16)	123879	NM_022458	64327	Hs.209989	NM_022458	HPRD:05700	LMBR1	ACHP|C7orf2|DIF14|PPD2|TPT|ZRS	limb development membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100773	chr8	127822207	127822395	+	20.57705	NA	Intergenic	Intergenic	-203098	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23095	chr12	12602627	12602844	+	20.57705	NA	intron (NM_001300742, intron 3 of 3)	intron (NM_001300742, intron 3 of 3)	92722	NM_058169	118426	Hs.720779	NM_058169	HPRD:17439	LOH12CR1	LOH1CR12	loss of heterozygosity, 12, chromosomal region 1	protein-coding
19-PTNLD28-TUMOR_peak_44816	chr18	19922683	19922879	+	20.57646	NA	Intergenic	Intergenic	75097	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_78569	chr5	252463	252589	+	20.57646	NA	intron (NM_004168, intron 13 of 14)	intron (NM_004168, intron 13 of 14)	19113	NR_104613	102467073	Hs.368328	NR_104613		LOC102467073	-	uncharacterized LOC102467073	ncRNA
19-PTNLD28-TUMOR_peak_1326	chr1	21655949	21656247	+	20.57147	NA	intron (NM_001113348, intron 1 of 18)	MIRb|SINE|MIR	15936	NM_001113348	1889	Hs.195080	NM_001397	HPRD:02690	ECE1	ECE	endothelin converting enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_63933	chr21	45627017	45627223	+	20.55295	NA	Intergenic	Intergenic	33767	NM_001283050	23308	Hs.14155	NM_015259	HPRD:05757	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell co-stimulator ligand	protein-coding
19-PTNLD28-TUMOR_peak_42567	chr17	56277469	56277649	+	20.54695	NA	intron (NM_000502, intron 9 of 12)	intron (NM_000502, intron 9 of 12)	7470	NM_000502	8288	Hs.279259	NM_000502	HPRD:00576	EPX	EPO|EPP|EPX-PEN	eosinophil peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_99668	chr8	99626773	99626894	+	20.54695	NA	intron (NM_001256313, intron 4 of 8)	L1PA2|LINE|L1	187583	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_80886	chr5	78497930	78498197	+	20.54695	NA	Intergenic	Intergenic	-33862	NM_152405	133746	Hs.482605	NM_152405	HPRD:05045	JMY	WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
19-PTNLD28-TUMOR_peak_70079	chr3	120088003	120088392	+	20.54695	NA	Intergenic	Intergenic	-20011	NM_001099678	116064	Hs.518084	NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
19-PTNLD28-TUMOR_peak_104050	chr9	81892135	81892324	+	20.54695	NA	Intergenic	Intergenic	-131648	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
19-PTNLD28-TUMOR_peak_74958	chr4	38206024	38206302	+	20.54695	NA	Intergenic	L3|LINE|CR1	84588	NM_001253915	23216	Hs.176503	NM_015173	HPRD:18161	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_35056	chr15	86422649	86422846	+	20.53026	NA	Intergenic	AmnSINE1|SINE|Deu	-84558	NM_022480	64410	Hs.498371	NM_022480	HPRD:07780	KLHL25	ENC-2|ENC2	kelch-like family member 25	protein-coding
19-PTNLD28-TUMOR_peak_56951	chr2	172455361	172455509	+	20.53026	NA	Intergenic	L1MC5|LINE|L1	76569	NM_001127383	79901	Hs.221941	NM_024843	HPRD:05764	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_12931	chr10	35484685	35485179	+	20.53026	NA	non-coding (NR_051971, exon 1 of 3)	non-coding (NR_051971, exon 1 of 3)	102	NR_051972	1390	Hs.200250	NM_001881	HPRD:00444	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
19-PTNLD28-TUMOR_peak_63625	chr21	42214003	42214155	+	20.53026	NA	intron (NR_073202, intron 1 of 32)	intron (NR_073202, intron 1 of 32)	4960	NM_001389	1826	Hs.397800	NM_001389	HPRD:03953	DSCAM	CHD2|CHD2-42|CHD2-52	Down syndrome cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_63590	chr21	40971580	40971876	+	20.53026	NA	intron (NR_026542, intron 2 of 2)	intron (NR_026542, intron 2 of 2)	13021	NR_026543	114041	Hs.375120	NM_153754	HPRD:09847	C21orf88	-	chromosome 21 open reading frame 88	ncRNA
19-PTNLD28-TUMOR_peak_89154	chr6	112651321	112651631	+	20.53026	NA	Intergenic	Intergenic	-17056	NM_001013734	442247	Hs.448264	NM_001013734	HPRD:18472	RFPL4B	RNF211	ret finger protein-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_13883	chr10	64684146	64684546	+	20.53026	NA	Intergenic	MER52C|LTR|ERV1	-105419	NM_001136178	1959	Hs.1395	NM_000399	HPRD:00551	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
19-PTNLD28-TUMOR_peak_47800	chr19	16358463	16358732	+	20.53026	NA	Intergenic	Intergenic	49932	NM_032493	8907	Hs.71040	NM_032493	HPRD:04639	AP1M1	AP47|CLAPM2|CLTNM|MU-1A	adaptor-related protein complex 1, mu 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_10561	chr1	227624796	227625029	+	20.53026	NA	Intergenic	AluJr|SINE|Alu	-119086	NM_003607	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_16245	chr10	130427722	130427926	+	20.52704	NA	Intergenic	Intergenic	343610	NR_120619	101927381	Hs.523342	NR_120619		LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
19-PTNLD28-TUMOR_peak_80814	chr5	76397220	76397466	+	20.52704	NA	intron (NR_024398, intron 2 of 3)	L2b|LINE|L2	-14313	NM_032367	84327	Hs.584988	NM_032367		ZBED3	-	zinc finger, BED-type containing 3	protein-coding
19-PTNLD28-TUMOR_peak_4163	chr1	66867030	66867228	+	20.52704	NA	Intergenic	LTR88a|LTR|Gypsy?	47068	NM_001297442	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_99548	chr8	95430048	95430244	+	20.52704	NA	intron (NM_012415, intron 3 of 14)	intron (NM_012415, intron 3 of 14)	19034	NM_001205263	25788	Hs.30561	NM_006550	HPRD:05049	RAD54B	RDH54	RAD54 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_26658	chr12	120763247	120763524	+	20.52704	NA	intron (NM_000928, intron 2 of 3)	intron (NM_000928, intron 2 of 3)	2207	NM_000928	5319	Hs.992	NM_000928	HPRD:01396	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2, group IB (pancreas)	protein-coding
19-PTNLD28-TUMOR_peak_23519	chr12	27536976	27537203	+	20.52704	NA	intron (NM_001248002, intron 4 of 15)	intron (NM_001248002, intron 4 of 15)	51302	NM_001248002	56938	Hs.445447	NM_020183		ARNTL2	BMAL2|CLIF|MOP9|PASD9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding
19-PTNLD28-TUMOR_peak_50993	chr2	9637319	9637453	+	20.52704	NA	intron (NM_003183, intron 13 of 18)	intron (NM_003183, intron 13 of 18)	22716	NM_001039613	285148	Hs.744980	NM_001039613		IAH1	-	isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_69661	chr3	108918759	108918899	+	20.52704	NA	Intergenic	L1HS|LINE|L1	21817	NR_026767	677779	Hs.618669	NM_001040054	ENSG00000214381	LINC00488	C3orf66	long intergenic non-protein coding RNA 488	ncRNA
19-PTNLD28-TUMOR_peak_69941	chr3	115049356	115049596	+	20.52704	NA	Intergenic	Intergenic	-183349	NM_015642	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_91662	chr7	24882479	24882785	+	20.52704	NA	intron (NM_145321, intron 10 of 20)	intron (NM_145321, intron 10 of 20)	49608	NR_104111	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_71477	chr3	144396072	144396278	+	20.52704	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	704008	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_86051	chr6	25490311	25490570	+	20.52704	NA	intron (NM_017640, intron 13 of 36)	intron (NM_017640, intron 13 of 36)	-161989	NM_006998	10590	Hs.116428	NM_006998	HPRD:10211	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
19-PTNLD28-TUMOR_peak_8312	chr1	174984521	174984690	+	20.52704	NA	intron (NM_022100, intron 2 of 2)	intron (NM_022100, intron 2 of 2)	7986	NM_022100	63931	Hs.654858	NM_022100	HPRD:14777	MRPS14	DJ262D12.2|HSMRPS14|MRP-S14|S14mt	mitochondrial ribosomal protein S14	protein-coding
19-PTNLD28-TUMOR_peak_100727	chr8	126924272	126924430	+	20.52704	NA	Intergenic	Intergenic	39090	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_109284	chrX	118407596	118407784	+	20.52704	NA	Intergenic	Intergenic	-17802	NR_110396	101928336		NR_110396	ENSG00000230392	LOC101928336	-	uncharacterized LOC101928336	ncRNA
19-PTNLD28-TUMOR_peak_18294	chr11	44976708	44976942	+	20.52652	NA	Intergenic	Intergenic	-3968	NM_001258324	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_39394	chr16	88839353	88839544	+	20.52461	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	11924	NM_001142864	9780	Hs.377001	NM_001142864	HPRD:10945	PIEZO1	DHS|FAM38A|Mib	piezo-type mechanosensitive ion channel component 1	protein-coding
19-PTNLD28-TUMOR_peak_92294	chr7	44583810	44583947	+	20.52303	NA	Intergenic	Intergenic	-2964	NM_013389	29881	Hs.567486	NM_013389	HPRD:09725	NPC1L1	NPC11L1	NPC1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_18464	chr11	47395585	47395717	+	20.52303	NA	intron (NM_003120, intron 2 of 4)	intron (NM_003120, intron 2 of 4)	4476	NM_003120	6688	Hs.502511	NM_003120	HPRD:01305	SPI1	OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_45967	chr18	56665746	56665923	+	20.52303	NA	Intergenic	Intergenic	-37137	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99839	chr8	103140727	103140950	+	20.52177	NA	Intergenic	LTR16D|LTR|ERVL	3178	NR_049859	100847001		NR_049859	miRBase:MI0019280	MIR5680	-	microRNA 5680	ncRNA
19-PTNLD28-TUMOR_peak_35688	chr16	1052810	1053162	+	20.52177	NA	Intergenic	Intergenic	21178	NM_014587	30812	Hs.243678	NM_014587	HPRD:16175	SOX8	-	SRY (sex determining region Y)-box 8	protein-coding
19-PTNLD28-TUMOR_peak_13251	chr10	44525704	44525877	+	20.52177	NA	Intergenic	Intergenic	121038	NR_033846	283033	Hs.730228	NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
19-PTNLD28-TUMOR_peak_6610	chr1	149615653	149616157	+	20.52177	NA	non-coding (NR_024584, exon 3 of 4)	non-coding (NR_024584, exon 3 of 4)	9988	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
19-PTNLD28-TUMOR_peak_48757	chr19	36561401	36561729	+	20.52116	NA	intron (NM_173636, intron 7 of 31)	intron (NM_173636, intron 7 of 31)	15782	NM_001083961	284403	Hs.116244	NM_173636	HPRD:10721	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
19-PTNLD28-TUMOR_peak_41592	chr17	41322266	41322523	+	20.51830	NA	promoter-TSS (NM_005899)	promoter-TSS (NM_005899)	26	NR_110868	101929767	Hs.640892	NR_110868	ENSG00000267002	LOC101929767	-	uncharacterized LOC101929767	ncRNA
19-PTNLD28-TUMOR_peak_72854	chr3	185270308	185270456	+	20.51008	NA	promoter-TSS (NM_139248)	promoter-TSS (NM_139248)	-13	NM_139248	200879	Hs.68864	NM_139248	HPRD:07392	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase, member H	protein-coding
19-PTNLD28-TUMOR_peak_80073	chr5	57754692	57754915	+	20.50387	NA	intron (NM_006622, intron 2 of 13)	intron (NM_006622, intron 2 of 13)	1163	NM_006622	10769	Hs.398157	NM_006622	HPRD:06118	PLK2	SNK|hPlk2|hSNK	polo-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_8852	chr1	185227048	185227205	+	20.49817	NA	intron (NM_017673, intron 16 of 18)	HY3|scRNA|scRNA	59335	NM_006469	10625	Hs.497183	NM_006469	HPRD:10004	IVNS1ABP	FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
19-PTNLD28-TUMOR_peak_78297	chr4	185339138	185339322	+	20.48774	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	56496	NM_002199	3660	Hs.654566	NM_002199	HPRD:00962	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
19-PTNLD28-TUMOR_peak_17640	chr11	21574610	21574840	+	20.48774	NA	intron (NM_001288713, intron 17 of 20)	intron (NM_001288713, intron 17 of 20)	-639997	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_58701	chr2	228253536	228253744	+	20.48774	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-9618	NM_024795	79853	Hs.156652	NM_024795	HPRD:08008	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
19-PTNLD28-TUMOR_peak_41891	chr17	44532570	44532739	+	20.48774	NA	Intergenic	Intergenic	-57422	NM_001006607	474170	Hs.646568	NM_001006607	HPRD:14227	LRRC37A2	LRRC37	leucine rich repeat containing 37, member A2	protein-coding
19-PTNLD28-TUMOR_peak_107672	chrX	16929395	16929671	+	20.48774	NA	Intergenic	L1ME3|LINE|L1	-35281	NM_004726	9185	Hs.186810	NM_004726	HPRD:02262	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_57714	chr2	200850425	200850614	+	20.48774	NA	Intergenic	Intergenic	-30060	NR_004862	129450	Hs.204619	NM_152382	HPRD:08232	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
19-PTNLD28-TUMOR_peak_32592	chr15	23729096	23729404	+	20.48774	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	78028	NR_039731	100616275		NR_039731	miRBase:MI0016872	MIR4508	-	microRNA 4508	ncRNA
19-PTNLD28-TUMOR_peak_110323	chrY	27490236	27490481	+	20.48774	NA	Intergenic	Intergenic	-111100	NR_001555	84559	Hs.531603	NR_001555	ENSG00000172332	GOLGA2P2Y	GOLGA2LY|GOLGA2LY1|GOLGA2P2	golgin A2 pseudogene 2, Y-linked	pseudo
19-PTNLD28-TUMOR_peak_64394	chr22	19971934	19972078	+	20.47898	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	20730	NR_039918	100616414		NR_039918		MIR4761	-	microRNA 4761	ncRNA
19-PTNLD28-TUMOR_peak_49339	chr19	45310385	45310683	+	20.47668	NA	Intergenic	Intergenic	-1782	NM_005581	4059	Hs.625725	NM_005581	HPRD:00197	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
19-PTNLD28-TUMOR_peak_48656	chr19	35645549	35645715	+	20.47531	NA	promoter-TSS (NM_144779)	promoter-TSS (NM_144779)	7	NM_014164	53827	Hs.333418	NM_014164	HPRD:09448	FXYD5	DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
19-PTNLD28-TUMOR_peak_292	chr1	3566579	3566792	+	20.46682	NA	promoter-TSS (NM_017818)	promoter-TSS (NM_017818)	-14	NM_017818	49856	Hs.31714	NM_017818	HPRD:06918	WRAP73	WDR8	WD repeat containing, antisense to TP73	protein-coding
19-PTNLD28-TUMOR_peak_38928	chr16	80773498	80773786	+	20.46682	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	64533	NM_152342	124359	Hs.373908	NM_152342	HPRD:10819	CDYL2	PCCP1	chromodomain protein, Y-like 2	protein-coding
19-PTNLD28-TUMOR_peak_983	chr1	15533027	15533245	+	20.46682	NA	intron (NM_018022, intron 1 of 2)	MIRb|SINE|MIR	-35016	NM_001278502	727684	Hs.667584	NM_001278501		C1orf195	-	chromosome 1 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_7659	chr1	161162414	161162589	+	20.46682	NA	intron (NM_005099, intron 7 of 8)	intron (NM_005099, intron 7 of 8)	6344	NM_005099	9507	Hs.211604	NM_005099		ADAMTS4	ADAMTS-2|ADAMTS-4|ADMP-1	ADAM metallopeptidase with thrombospondin type 1 motif, 4	protein-coding
19-PTNLD28-TUMOR_peak_23043	chr12	11651042	11651238	+	20.46481	NA	Intergenic	Intergenic	-49824	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
19-PTNLD28-TUMOR_peak_88153	chr6	57181422	57181799	+	20.46152	NA	promoter-TSS (NM_001282487)	promoter-TSS (NM_001282487)	-805	NM_000947	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	primase, DNA, polypeptide 2 (58kDa)	protein-coding
19-PTNLD28-TUMOR_peak_4440	chr1	78002524	78002784	+	20.45957	NA	intron (NM_012093, intron 13 of 13)	intron (NM_012093, intron 13 of 13)	145689	NM_015534	26009	Hs.480506	NM_015534	HPRD:15907	ZZZ3	ATAC1	zinc finger, ZZ-type containing 3	protein-coding
19-PTNLD28-TUMOR_peak_92407	chr7	46970046	46970283	+	20.45957	NA	Intergenic	Intergenic	651578	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_46375	chr18	76963364	76963518	+	20.45957	NA	intron (NM_198531, intron 9 of 29)	intron (NM_198531, intron 9 of 29)	134044	NM_198531	374868	Hs.465475	NM_198531	HPRD:16528	ATP9B	ATPASEP|ATPIIB|NEO1L|hMMR1	ATPase, class II, type 9B	protein-coding
19-PTNLD28-TUMOR_peak_66045	chr22	47439817	47440136	+	20.45669	NA	intron (NR_104292, intron 12 of 13)	intron (NR_104292, intron 12 of 13)	-128038	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71645	chr3	149366464	149366592	+	20.45669	NA	intron (NM_015472, intron 2 of 6)	intron (NM_015472, intron 2 of 6)	9284	NM_001168280	25937	Hs.477921	NM_015472	HPRD:09580	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_45848	chr18	53560124	53560662	+	20.45669	NA	intron (NR_110755, intron 3 of 3)	L1PA3|LINE|L1	27037	NR_110755	101927273	Hs.434335	NR_110755	ENSG00000260930	LOC101927273	-	uncharacterized LOC101927273	ncRNA
19-PTNLD28-TUMOR_peak_873	chr1	12963845	12964025	+	20.45669	NA	Intergenic	Intergenic	-12532	NM_001012277	441871		NM_001012277	HPRD:17409	PRAMEF7	-	PRAME family member 7	protein-coding
19-PTNLD28-TUMOR_peak_49349	chr19	45418322	45418640	+	20.45669	NA	intron (NM_001645, intron 2 of 3)	intron (NM_001645, intron 2 of 3)	560	NM_001645	341	Hs.110675	NM_001645	HPRD:00131	APOC1	-	apolipoprotein C-I	protein-coding
19-PTNLD28-TUMOR_peak_69737	chr3	111521174	111521538	+	20.43586	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	-56671	NM_001134438	90102	Hs.603252	NM_145753	HPRD:06611	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_18414	chr11	46638209	46638449	+	20.43586	NA	promoter-TSS (NM_001205119)	promoter-TSS (NM_001205119)	448	NM_173811	283254	Hs.714463	NM_173811		HARBI1	C11orf77	harbinger transposase derived 1	protein-coding
19-PTNLD28-TUMOR_peak_93973	chr7	93541071	93541269	+	20.43250	NA	TTS (NM_021955)	TTS (NM_021955)	5350	NM_021955	2792	Hs.732212	NM_021955	HPRD:01805	GNGT1	GNG1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_19952	chr11	73336840	73336988	+	20.42830	NA	Intergenic	Intergenic	-20309	NM_001130033	58473	Hs.445489	NM_021200	HPRD:09630	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding
19-PTNLD28-TUMOR_peak_12769	chr10	31142055	31142295	+	20.42830	NA	intron (NM_182755, intron 6 of 7)	intron (NM_182755, intron 6 of 7)	146271	NM_001143769	220929	Hs.660642	NM_182755	HPRD:11247	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
19-PTNLD28-TUMOR_peak_11787	chr10	5222392	5222610	+	20.42830	NA	intron (NR_027916, intron 1 of 7)	L1PA3|LINE|L1	4649	NR_027916	340811	Hs.282513	NM_001007536		AKR1CL1	-	aldo-keto reductase family 1, member C-like 1	pseudo
19-PTNLD28-TUMOR_peak_83079	chr5	148414962	148415105	+	20.42830	NA	intron (NM_024577, intron 8 of 16)	intron (NM_024577, intron 8 of 16)	27704	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_105673	chr9	118519755	118520074	+	20.42830	NA	Intergenic	Intergenic	-13396	NR_109805	101928775	Hs.522362	NR_109805		LOC101928775	-	uncharacterized LOC101928775	ncRNA
19-PTNLD28-TUMOR_peak_13824	chr10	62923233	62923489	+	20.42830	NA	Intergenic	Intergenic	147328	NR_108052	100507058	Hs.145227	NR_108052		LINC00845	-	long intergenic non-protein coding RNA 845	ncRNA
19-PTNLD28-TUMOR_peak_108236	chrX	48489859	48490059	+	20.42830	NA	Intergenic	Intergenic	33735	NM_001166426	64743	Hs.521973	NM_017883	HPRD:06753	WDR13	MG21	WD repeat domain 13	protein-coding
19-PTNLD28-TUMOR_peak_54936	chr2	112045343	112045484	+	20.42485	NA	Intergenic	Intergenic	33250	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_4206	chr1	68021261	68021437	+	20.40811	NA	Intergenic	Intergenic	-125226	NM_001018068	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41947	chr17	45375138	45375642	+	20.40811	NA	intron (NM_000212, intron 10 of 14)	intron (NM_000212, intron 10 of 14)	25589	NR_110881	102724508	Hs.661005	NR_110880		LOC102724508	-	uncharacterized LOC102724508	ncRNA
19-PTNLD28-TUMOR_peak_26343	chr12	112074160	112074329	+	20.39932	NA	Intergenic	Intergenic	-36764	NM_002973	6311	Hs.76253	NM_002973	HPRD:03307	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
19-PTNLD28-TUMOR_peak_8955	chr1	189588886	189589073	+	20.39932	NA	Intergenic	Intergenic	857780	NM_199051	339479	Hs.65765	NM_199051	HPRD:16782	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	bone morphogenetic protein/retinoic acid inducible neural-specific 3	protein-coding
19-PTNLD28-TUMOR_peak_18433	chr11	46958165	46958594	+	20.39932	NA	non-coding (NR_103472, exon 1 of 8)	non-coding (NR_103472, exon 1 of 8)	139	NR_103472	79096	Hs.368296	NM_024113	HPRD:08332	C11orf49	-	chromosome 11 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_52727	chr2	49230016	49230220	+	20.39932	NA	intron (NM_181446, intron 4 of 8)	intron (NM_181446, intron 4 of 8)	151548	NM_000145	2492	Hs.1428	NM_000145	HPRD:00639	FSHR	FSHRO|LGR1|ODG1	follicle stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_94149	chr7	98062740	98062886	+	20.39932	NA	Intergenic	Intergenic	-32386	NM_018842	55971	Hs.656063	NM_018842	HPRD:11270	BAIAP2L1	IRTKS	BAI1-associated protein 2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_7633	chr1	160959698	160960037	+	20.39822	NA	Intergenic	Intergenic	31266	NM_016946	50848	Hs.517293	NM_016946	HPRD:12038	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
19-PTNLD28-TUMOR_peak_37064	chr16	28754864	28755021	+	20.39684	NA	Intergenic	AluY|SINE|Alu	-8814	NM_001287250	100507607	Hs.710214	NM_001287250		NPIPB9	-	nuclear pore complex interacting protein family, member B9	protein-coding
19-PTNLD28-TUMOR_peak_87415	chr6	41396959	41397137	+	20.39263	NA	Intergenic	Intergenic	-73134	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_1223	chr1	19756681	19756899	+	20.39002	NA	intron (NM_001206540, intron 1 of 9)	intron (NM_001206540, intron 1 of 9)	54411	NM_001282162	832	Hs.432760	NM_004930	HPRD:11872	CAPZB	CAPB|CAPPB|CAPZ	capping protein (actin filament) muscle Z-line, beta	protein-coding
19-PTNLD28-TUMOR_peak_71671	chr3	149933851	149934260	+	20.38728	NA	Intergenic	Intergenic	-22251	NR_110168	101927992	Hs.534682	NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
19-PTNLD28-TUMOR_peak_24191	chr12	50618239	50618406	+	20.38728	NA	intron (NM_001113546, intron 3 of 10)	intron (NM_001113546, intron 3 of 10)	-1834	NM_001113547	51474	Hs.525419	NM_016357	HPRD:09755	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_53989	chr2	88469549	88469916	+	20.38728	NA	promoter-TSS (NM_001244678)	promoter-TSS (NM_001244678)	-82	NM_001244676	55258	Hs.739080	NM_018271	HPRD:07715	THNSL2	SOFAT|THS2|TSH2	threonine synthase-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_40982	chr17	30846502	30846736	+	20.38728	NA	intron (NM_015194, intron 21 of 21)	CpG	32514	NM_003885	8851	Hs.500015	NM_003885	HPRD:04586	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding
19-PTNLD28-TUMOR_peak_98220	chr8	37783002	37783282	+	20.38728	NA	Intergenic	Intergenic	14505	NM_152413	137362	Hs.380740	NM_152413	HPRD:14558	GOT1L1	-	glutamic-oxaloacetic transaminase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_3756	chr1	57223971	57224128	+	20.38728	NA	intron (NM_001004303, intron 6 of 19)	intron (NM_001004303, intron 6 of 19)	61320	NM_001004303	199920	Hs.437655	NM_001004303	HPRD:14120	C1orf168	-	chromosome 1 open reading frame 168	protein-coding
19-PTNLD28-TUMOR_peak_91785	chr7	29131392	29131549	+	20.38728	NA	intron (NM_031311, intron 6 of 12)	intron (NM_031311, intron 6 of 12)	-33179	NR_120523	101928168	Hs.666750	NR_120523		LOC101928168	-	uncharacterized LOC101928168	ncRNA
19-PTNLD28-TUMOR_peak_60237	chr20	24041793	24042111	+	20.38728	NA	Intergenic	Intergenic	-72536	NM_178311	92086	Hs.355394	NM_080920	HPRD:17037	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
19-PTNLD28-TUMOR_peak_106161	chr9	130186498	130186978	+	20.38728	NA	promoter-TSS (NM_001286697)	promoter-TSS (NM_001286697)	85	NM_001286698	7633	Hs.522399	NM_007135	HPRD:01931	ZNF79	pT7	zinc finger protein 79	protein-coding
19-PTNLD28-TUMOR_peak_60945	chr20	36824084	36824419	+	20.38728	NA	Intergenic	LTR16A2|LTR|ERVL	-30551	NM_198951	7052	Hs.517033	NM_004613	HPRD:01825	TGM2	G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC	transglutaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_59775	chr20	10301900	10302139	+	20.38728	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-101865	NR_040710	100131208	Hs.658178	NR_040710	ENSG00000227906	SNAP25-AS1	-	SNAP25 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75721	chr4	76621377	76621628	+	20.38728	NA	Intergenic	Intergenic	-22835	NM_203504	9908	Hs.303676	NM_012297	HPRD:06570	G3BP2	-	GTPase activating protein (SH3 domain) binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_20472	chr11	86635117	86635362	+	20.38728	NA	intron (NR_120592, intron 2 of 2)	intron (NR_120592, intron 2 of 2)	31201	NM_012193	8322	Hs.591968	NM_012193	HPRD:05203	FZD4	CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4	frizzled class receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_43723	chr17	76223017	76223241	+	20.38728	NA	Intergenic	Intergenic	-4262	NM_001204211	283999	Hs.632228	NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
19-PTNLD28-TUMOR_peak_41422	chr17	39216500	39216767	+	20.38728	NA	promoter-TSS (NM_001165252)	promoter-TSS (NM_001165252)	-289	NM_001165252	730755	Hs.406714	NM_001165252	ENSG00000212724	KRTAP2-3	KAP2.3|KRTAP2.3	keratin associated protein 2-3	protein-coding
19-PTNLD28-TUMOR_peak_63660	chr21	42832510	42832774	+	20.38683	NA	Intergenic	Intergenic	28665	NM_001282920	4599	Hs.517307	NM_002462	HPRD:00919	MX1	IFI-78K|IFI78|MX|MxA	MX dynamin-like GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_103221	chr9	42473983	42474201	+	20.38683	NA	non-coding (NR_026759, exon 5 of 5)	non-coding (NR_026759, exon 5 of 5)	5503	NR_026759	100133036	Hs.584289	NR_026759	ENSG00000223839	FAM95B1	-	family with sequence similarity 95, member B1	ncRNA
19-PTNLD28-TUMOR_peak_98633	chr8	48572897	48573064	+	20.38683	NA	intron (NM_001080394, intron 10 of 19)	intron (NM_001080394, intron 10 of 19)	77746	NM_005195	1052	Hs.440829	NM_005195		CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
19-PTNLD28-TUMOR_peak_100251	chr8	118723361	118723640	+	20.38565	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	190548	NM_080651	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_78929	chr5	10988097	10988275	+	20.38565	NA	intron (NR_109988, intron 19 of 21)	intron (NR_109988, intron 19 of 21)	-226799	NM_001291963	1611	Hs.75189	NM_004394	HPRD:02977	DAP	-	death-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_42611	chr17	56736795	56736957	+	20.38244	NA	intron (NM_198393, intron 1 of 32)	CpG	32540	NM_001201457	56155	Hs.390221	NM_031272	ENSG00000121101	TEX14	CT113	testis expressed 14	protein-coding
19-PTNLD28-TUMOR_peak_30399	chr14	55032665	55032886	+	20.38244	NA	Intergenic	CpG	-1555	NM_001161576	23034	Hs.98259	NM_015589	HPRD:10209	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_21621	chr11	120018379	120019147	+	20.35184	NA	Intergenic	Intergenic	-9900	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_43501	chr17	73906880	73907052	+	20.35180	NA	intron (NM_001080542, intron 28 of 28)	intron (NM_001080542, intron 28 of 28)	-5785	NM_032478	64978	Hs.442609	NM_032478	HPRD:14758	MRPL38	L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_37363	chr16	31495874	31496184	+	20.35162	NA	exon (NM_003041, exon 2 of 14)	exon (NM_003041, exon 2 of 14)	1590	NM_003041	6524	Hs.709195	NM_003041	HPRD:08919	SLC5A2	SGLT2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_87296	chr6	39182820	39183471	+	20.34964	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	14106	NM_003740	8645	Hs.444448	NM_003740	HPRD:04604	KCNK5	K2p5.1|TASK-2|TASK2	potassium channel, subfamily K, member 5	protein-coding
19-PTNLD28-TUMOR_peak_40332	chr17	16424678	16424848	+	20.33758	NA	Intergenic	Intergenic	-29258	NM_207387	388341	Hs.25425	NM_207387	HPRD:16939	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
19-PTNLD28-TUMOR_peak_19519	chr11	67418007	67418348	+	20.33758	NA	promoter-TSS (NM_080658)	promoter-TSS (NM_080658)	-47	NM_080658	91703	Hs.126265	NM_080658	HPRD:12422	ACY3	ACY-3|HCBP1	aspartoacylase (aminocyclase) 3	protein-coding
19-PTNLD28-TUMOR_peak_51109	chr2	10975557	10975732	+	20.33758	NA	intron (NM_001282705, intron 1 of 13)	intron (NM_001282705, intron 1 of 13)	2459	NM_001282705	10130	Hs.212102	NM_005742	HPRD:07504	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A, member 6	protein-coding
19-PTNLD28-TUMOR_peak_73487	chr3	195380597	195380762	+	20.33758	NA	Intergenic	LTR13|LTR|ERVK	-4231	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_40722	chr17	25621933	25622119	+	20.33758	NA	intron (NM_134265, intron 1 of 6)	intron (NM_134265, intron 1 of 6)	920	NM_134265	26118	Hs.446017	NM_015626	HPRD:15680	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59968	chr20	17324702	17324950	+	20.33758	NA	intron (NM_002594, intron 2 of 11)	intron (NM_002594, intron 2 of 11)	117229	NM_002594	5126	Hs.315186	NM_002594	HPRD:01202	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
19-PTNLD28-TUMOR_peak_3806	chr1	59038472	59038618	+	20.33118	NA	Intergenic	Intergenic	4621	NM_002353	4070	Hs.23582	NM_002353	HPRD:00672	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
19-PTNLD28-TUMOR_peak_1737	chr1	27371152	27371319	+	20.33005	NA	Intergenic	Intergenic	-31902	NM_052943	115572	Hs.632378	NM_052943	HPRD:16882	FAM46B	-	family with sequence similarity 46, member B	protein-coding
19-PTNLD28-TUMOR_peak_72632	chr3	181500145	181500318	+	20.33005	NA	Intergenic	HAL1|LINE|L1	70519	NM_003106	6657	Hs.518438	NM_003106	HPRD:08921	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
19-PTNLD28-TUMOR_peak_79282	chr5	28483788	28484030	+	20.33005	NA	Intergenic	LTR1D|LTR|ERV1	-443068	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_27427	chr13	22588682	22588943	+	20.33005	NA	Intergenic	Intergenic	-136513	NR_047040	100874182	Hs.148951	NR_047040		LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
19-PTNLD28-TUMOR_peak_6707	chr1	150785699	150785846	+	20.33005	NA	exon (NM_001668, exon 21 of 22)	exon (NM_001668, exon 21 of 22)	-4855	NM_000396	1513	Hs.632466	NM_000396	HPRD:03064	CTSK	CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD	cathepsin K	protein-coding
19-PTNLD28-TUMOR_peak_99939	chr8	104620687	104620830	+	20.33005	NA	intron (NM_001100117, intron 1 of 23)	L1PA2|LINE|L1	107782	NM_001100117	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_88131	chr6	56708759	56709214	+	20.32851	NA	promoter-TSS (NM_183380)	promoter-TSS (NM_183380)	-523	NM_183380	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_890	chr1	13403206	13403408	+	20.32409	NA	intron (NM_001099850, intron 1 of 2)	intron (NM_001099850, intron 1 of 2)	-5821	NM_001039361	343071	Hs.684629	NM_001039361	ENSG00000187545	PRAMEF10	-	PRAME family member 10	protein-coding
19-PTNLD28-TUMOR_peak_896	chr1	13624003	13624205	+	20.32409	NA	intron (NM_001099850, intron 1 of 2)	intron (NM_001099850, intron 1 of 2)	-5821	NM_001039361	343071	Hs.684629	NM_001039361	ENSG00000187545	PRAMEF10	-	PRAME family member 10	protein-coding
19-PTNLD28-TUMOR_peak_106129	chr9	129553761	129554103	+	20.32409	NA	Intergenic	LTR33|LTR|ERVL	-13353	NM_014007	23099	Hs.355581	NM_014007	HPRD:08346	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19-PTNLD28-TUMOR_peak_49822	chr19	49728172	49728412	+	20.32409	NA	Intergenic	Intergenic	67276	NM_017636	54795	Hs.467101	NM_017636	HPRD:09502	TRPM4	PFHB1B|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding
19-PTNLD28-TUMOR_peak_43645	chr17	75315442	75315629	+	20.31503	NA	promoter-TSS (NM_006640)	promoter-TSS (NM_006640)	-62	NM_006640	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_37758	chr16	50408692	50408887	+	20.31339	NA	Intergenic	Intergenic	-5944	NM_001173984	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_83388	chr5	153989998	153990302	+	20.31339	NA	Intergenic	CpG	-14518	NR_036094	100422950		NR_036094	miRBase:MI0014165	MIR3141	-	microRNA 3141	ncRNA
19-PTNLD28-TUMOR_peak_61537	chr20	46370669	46371044	+	20.31339	NA	intron (NM_198596, intron 2 of 20)	intron (NM_198596, intron 2 of 20)	43952	NM_018837	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_73293	chr3	192958904	192959403	+	20.31339	NA	promoter-TSS (NR_026877)	promoter-TSS (NR_026877)	236	NM_020386	57110	Hs.36761	NM_020386	HPRD:07577	HRASLS	A-C1|H-REV107|HRASLS1|HRSL1|HSD28	HRAS-like suppressor	protein-coding
19-PTNLD28-TUMOR_peak_99059	chr8	67594824	67594999	+	20.31339	NA	intron (NM_001204173, intron 2 of 18)	intron (NM_001204173, intron 2 of 18)	15124	NM_001204173	100533105	Hs.613417	NM_001204173		C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_66771	chr3	13849935	13850653	+	20.31339	NA	Intergenic	Intergenic	71324	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	wingless-type MMTV integration site family, member 7A	protein-coding
19-PTNLD28-TUMOR_peak_83622	chr5	159772449	159772586	+	20.31339	NA	Intergenic	Intergenic	25131	NM_031908	114898	Hs.110062	NM_031908	HPRD:12715	C1QTNF2	CTRP2|zacrp2	C1q and tumor necrosis factor related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_82989	chr5	146207984	146208198	+	20.31217	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	50257	NM_001271948	5521	Hs.627618	NM_181674	HPRD:05059	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
19-PTNLD28-TUMOR_peak_38755	chr16	75314234	75314409	+	20.31217	NA	Intergenic	Intergenic	-12370	NM_001170715	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_61097	chr20	39591685	39591876	+	20.31217	NA	Intergenic	Intergenic	-65682	NM_003286	7150	Hs.472737	NM_003286	HPRD:00535	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
19-PTNLD28-TUMOR_peak_32259	chr14	104468343	104468642	+	20.31217	NA	intron (NM_153046, intron 13 of 35)	AluJb|SINE|Alu	-59847	NM_001257268	647286	Hs.632325	NM_001257268	ENSG00000227729	RD3L	TDRD9-AS1|TDRD9AS1	retinal degeneration 3-like	protein-coding
19-PTNLD28-TUMOR_peak_42332	chr17	49800477	49800632	+	20.31217	NA	intron (NM_001082533, intron 5 of 9)	intron (NM_001082533, intron 5 of 9)	386478	NR_122104	440446	Hs.626751	NR_122104	HPRD:13466	LOC440446	-	uncharacterized LOC440446	ncRNA
19-PTNLD28-TUMOR_peak_2761	chr1	41078077	41078213	+	20.31217	NA	Intergenic	LTR41B|LTR|ERVL	53179	NM_014747	9783	Hs.654808	NM_014747	HPRD:17976	RIMS3	NIM3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
19-PTNLD28-TUMOR_peak_1954	chr1	30418279	30418499	+	20.31217	NA	Intergenic	Intergenic	92070	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_3882	chr1	60216445	60216640	+	20.31217	NA	intron (NM_001113411, intron 15 of 16)	intron (NM_001113411, intron 15 of 16)	-17574	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_28681	chr13	93896934	93897103	+	20.30840	NA	intron (NM_005708, intron 1 of 8)	L1PBa|LINE|L1	17940	NM_005708	10082	Hs.444329	NM_005708	HPRD:05099	GPC6	OMIMD1	glypican 6	protein-coding
19-PTNLD28-TUMOR_peak_8323	chr1	175145502	175145782	+	20.30840	NA	intron (NM_001162895, intron 1 of 2)	intron (NM_001162895, intron 1 of 2)	16307	NM_001162895	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_93806	chr7	87229971	87230461	+	20.30840	NA	5' UTR (NM_000927, exon 2 of 29)	5' UTR (NM_000927, exon 2 of 29)	-27513	NM_001134405	154661	Hs.411488	NM_138290	HPRD:15274	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_33342	chr15	43894492	43894666	+	20.30840	NA	intron (NM_153700, intron 23 of 28)	AluJb|SINE|Alu	9327	NM_020990	1159	Hs.741420	NM_020990	HPRD:00424	CKMT1B	CKMT|CKMT1|UMTCK	creatine kinase, mitochondrial 1B	protein-coding
19-PTNLD28-TUMOR_peak_24538	chr12	54560382	54560786	+	20.30840	NA	Intergenic	Intergenic	22157	NM_001243789	23583	Hs.632721	NM_014311	HPRD:06376	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
19-PTNLD28-TUMOR_peak_1445	chr1	23669781	23669957	+	20.30705	NA	intron (NM_001297620, intron 1 of 9)	intron (NM_001297620, intron 1 of 9)	988	NM_001102398	10236	Hs.373763	NM_005826	HPRD:06228	HNRNPR	HNRPR|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
19-PTNLD28-TUMOR_peak_6195	chr1	144481365	144481842	+	20.29608	NA	intron (NM_001278267, intron 52 of 130)	CpG	-117357	NM_001143883	653505	Hs.573713	NM_178230	ENSG00000255854	PPIAL4B	COAS-2|COAS2|PPIAL4|PPIAL4A	peptidylprolyl isomerase A (cyclophilin A)-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_47346	chr19	11692635	11692898	+	20.29608	NA	Intergenic	AluJb|SINE|Alu	-2965	NM_001111036	54	Hs.1211	NM_001611	HPRD:01374	ACP5	SPENCDI|TRAP	acid phosphatase 5, tartrate resistant	protein-coding
19-PTNLD28-TUMOR_peak_90706	chr7	42046	42261	+	20.29608	NA	Intergenic	LTR8A|LTR|ERV1	-107565	NR_108065	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
19-PTNLD28-TUMOR_peak_37147	chr16	29636462	29636597	+	20.29608	NA	Intergenic	L1M3|LINE|L1	-11491	NR_002593	81893	Hs.677169	NM_031211	HPRD:13964	SLC7A5P1	DC49|LAT1-3TM|MLAS|hLAT1-3TM	solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_34857	chr15	82815050	82815444	+	20.29608	NA	intron (NR_111962, intron 7 of 10)	intron (NR_111962, intron 7 of 10)	9618	NR_111943	6218	Hs.433427	NM_001021	HPRD:01600	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17	ribosomal protein S17	protein-coding
19-PTNLD28-TUMOR_peak_22853	chr12	7244599	7245257	+	20.29550	NA	intron (NM_001733, intron 1 of 8)	intron (NM_001733, intron 1 of 8)	115	NM_001733	715	Hs.524224	NM_001733		C1R	-	complement component 1, r subcomponent	protein-coding
19-PTNLD28-TUMOR_peak_16718	chr11	3181603	3181845	+	20.27995	NA	intron (NM_145638, intron 1 of 20)	CpG	4858	NM_020896	114879	Hs.436166	NM_020896	HPRD:09475	OSBPL5	OBPH1|ORP5	oxysterol binding protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_587	chr1	9304760	9305008	+	20.27995	NA	intron (NM_001282587, intron 1 of 4)	intron (NM_001282587, intron 1 of 4)	4981	NM_001282587	9563	Hs.463511	NM_004285	HPRD:00681	H6PD	CORTRD1|G6PDH|GDH	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding
19-PTNLD28-TUMOR_peak_90911	chr7	2439439	2440000	+	20.27865	NA	Intergenic	Intergenic	-3476	NM_001243795	55501	Hs.744987	NM_018641	HPRD:13056	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
19-PTNLD28-TUMOR_peak_21930	chr11	126016704	126017021	+	20.27738	NA	Intergenic	Intergenic	64725	NM_032795	84881	Hs.150458	NM_032795	HPRD:07862	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_6760	chr1	151273470	151273659	+	20.27738	NA	intron (NM_001198773, intron 9 of 12)	intron (NM_001198773, intron 9 of 12)	18773	NM_020832	57592	Hs.186756	NM_020832	HPRD:13859	ZNF687	-	zinc finger protein 687	protein-coding
19-PTNLD28-TUMOR_peak_78407	chr4	187181830	187182601	+	20.27738	NA	Intergenic	Intergenic	-4903	NM_000128	2160	Hs.1430	NM_000128	HPRD:07524	F11	FXI	coagulation factor XI	protein-coding
19-PTNLD28-TUMOR_peak_71214	chr3	139029329	139029482	+	20.27738	NA	Intergenic	Intergenic	-33456	NM_020191	56945	Hs.745001	NM_020191	HPRD:10430	MRPS22	C3orf5|COXPD5|GIBT|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
19-PTNLD28-TUMOR_peak_14595	chr10	81903895	81904369	+	20.27369	NA	intron (NM_001012973, intron 3 of 3)	intron (NM_001012973, intron 3 of 3)	11874	NM_001012973	219348	Hs.204947	NM_001012973		PLAC9	-	placenta-specific 9	protein-coding
19-PTNLD28-TUMOR_peak_56045	chr2	139402492	139402776	+	20.26138	NA	Intergenic	LTR10F|LTR|ERV1	135177	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_14290	chr10	74075442	74075741	+	20.26138	NA	Intergenic	Intergenic	39316	NM_001002762	54788	Hs.500013	NM_017626	HPRD:07086	DNAJB12	DJ10	DnaJ (Hsp40) homolog, subfamily B, member 12	protein-coding
19-PTNLD28-TUMOR_peak_36743	chr16	21550438	21550573	+	20.26138	NA	Intergenic	L1M3|LINE|L1	-18740	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_32758	chr15	29861127	29861257	+	20.25877	NA	intron (NM_015307, intron 1 of 10)	intron (NM_015307, intron 1 of 10)	1735	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_79807	chr5	50258821	50258992	+	20.25877	NA	Intergenic	Intergenic	7115	NR_104653	100287592	Hs.519298	NR_104653		LOC100287592	-	uncharacterized LOC100287592	ncRNA
19-PTNLD28-TUMOR_peak_73657	chr3	197228879	197229067	+	20.25877	NA	Intergenic	Intergenic	53885	NM_203314	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_82340	chr5	135347132	135347333	+	20.25877	NA	Intergenic	Intergenic	-17352	NM_000358	7045	Hs.369397	NM_000358	HPRD:03409	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor, beta-induced, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_103594	chr9	69842496	69842918	+	20.24190	NA	Intergenic	AluSx1|SINE|Alu	-84923	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_61481	chr20	45768702	45768861	+	20.24023	NA	intron (NM_005244, intron 9 of 15)	intron (NM_005244, intron 9 of 15)	-26828	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
19-PTNLD28-TUMOR_peak_78848	chr5	9790480	9790644	+	20.24023	NA	intron (NR_027112, intron 4 of 12)	Kanga1c|DNA|TcMar-Tc2	113374	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LOC285692	-	uncharacterized LOC285692	ncRNA
19-PTNLD28-TUMOR_peak_59265	chr2	241623154	241623369	+	20.24023	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	-944	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
19-PTNLD28-TUMOR_peak_81353	chr5	100427310	100427479	+	20.23322	NA	Intergenic	MLT1G1-int|LTR|ERVL-MaLR	-188405	NM_175052	7903	Hs.308628	NM_005668	HPRD:03970	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_23220	chr12	14783170	14783342	+	20.23322	NA	intron (NM_004963, intron 19 of 26)	intron (NM_004963, intron 19 of 26)	-62465	NM_024829	79887	Hs.131933	NM_024829		PLBD1	-	phospholipase B domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69172	chr3	77460578	77460759	+	20.23322	NA	intron (NM_001290065, intron 2 of 26)	L1MC4a|LINE|L1	313505	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout, axon guidance receptor, homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34031	chr15	65854392	65854583	+	20.23322	NA	intron (NM_016395, intron 5 of 10)	MER21A|LTR|ERVL	31660	NM_016395	51495	Hs.512973	NM_016395	HPRD:11037	PTPLAD1	B-IND1|BIND1|HACD3|HSPC121	protein tyrosine phosphatase-like A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_37932	chr16	55633148	55633296	+	20.23322	NA	Intergenic	L1PA3|LINE|L1	32638	NM_032330	84290	Hs.660027	NM_032330	HPRD:16682	CAPNS2	-	calpain, small subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_21520	chr11	118691155	118691454	+	20.23322	NA	Intergenic	Intergenic	-29332	NM_004397	1656	Hs.408461	NM_004397		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
19-PTNLD28-TUMOR_peak_35353	chr15	96100854	96101047	+	20.23322	NA	Intergenic	Intergenic	124628	NR_027133	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
19-PTNLD28-TUMOR_peak_20085	chr11	75258730	75258996	+	20.23322	NA	Intergenic	L2c|LINE|L2	-14238	NM_001207014	871	Hs.596449	NM_001235	HPRD:02968	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_16713	chr11	3113127	3113332	+	20.23004	NA	intron (NM_145638, intron 18 of 20)	intron (NM_145638, intron 18 of 20)	-34548	NM_139273	833	Hs.274873	NM_001751	HPRD:00464	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_82291	chr5	134557984	134558249	+	20.23004	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	25751	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_12602	chr10	28558882	28559217	+	20.23004	NA	intron (NM_173496, intron 2 of 18)	intron (NM_173496, intron 2 of 18)	12018	NM_173496	143098	Hs.499159	NM_173496	HPRD:14733	MPP7	-	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
19-PTNLD28-TUMOR_peak_57976	chr2	205849327	205849715	+	20.23004	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	439005	NM_057177	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_69101	chr3	74710928	74711121	+	20.22549	NA	Intergenic	Intergenic	-140681	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
19-PTNLD28-TUMOR_peak_69539	chr3	105601374	105601704	+	20.22549	NA	Intergenic	AluY|SINE|Alu	-13652	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_78282	chr4	185089634	185089899	+	20.22549	NA	intron (NM_153343, intron 1 of 7)	CpG	49348	NM_153343	133121	Hs.297814	NM_153343	HPRD:16863	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
19-PTNLD28-TUMOR_peak_37641	chr16	47882344	47882633	+	20.22549	NA	TTS (NR_110649)	TTS (NR_110649)	-10004	NR_110650	101927132	Hs.589404	NR_110650	ENSG00000261231	LOC101927132	-	uncharacterized LOC101927132	ncRNA
19-PTNLD28-TUMOR_peak_9963	chr1	212353115	212353324	+	20.22549	NA	Intergenic	Intergenic	102264	NR_036068	100422947		NR_036068		MIR3122	-	microRNA 3122	ncRNA
19-PTNLD28-TUMOR_peak_107527	chrX	10124756	10125072	+	20.22549	NA	promoter-TSS (NM_001830)	promoter-TSS (NM_001830)	-71	NM_001256944	1183	Hs.495674	NM_001830	HPRD:02362	CLCN4	CLC4|ClC-4|ClC-4A	chloride channel, voltage-sensitive 4	protein-coding
19-PTNLD28-TUMOR_peak_33706	chr15	57863287	57863484	+	20.22549	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-20717	NR_104368	145781	Hs.437256	NM_001018090		GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
19-PTNLD28-TUMOR_peak_5444	chr1	110560416	110560720	+	20.22549	NA	exon (NM_006621, exon 11 of 17)	exon (NM_006621, exon 11 of 17)	-13631	NM_001270768	85369	Hs.584996	NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_26799	chr12	122331922	122332109	+	20.21754	NA	intron (NM_001261400, intron 1 of 3)	intron (NM_001261400, intron 1 of 3)	5378	NM_002813	5715	Hs.131151	NM_002813	HPRD:04394	PSMD9	Rpn4|p27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding
19-PTNLD28-TUMOR_peak_60101	chr20	19984450	19984623	+	20.21754	NA	Intergenic	Intergenic	-13398	NM_181528	51126	Hs.368783	NM_016100	HPRD:07136	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_68698	chr3	62590088	62590297	+	20.21754	NA	intron (NM_183393, intron 6 of 26)	intron (NM_183393, intron 6 of 26)	-231002	NM_018008	55079	Hs.241523	NM_018008	HPRD:07596	FEZF2	FEZ|FEZL|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_100571	chr8	125053624	125053982	+	20.21754	NA	promoter-TSS (NR_040044)	promoter-TSS (NR_040044)	-780	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41525	chr17	40559604	40559800	+	20.21754	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	15636	NM_012232	284119	Hs.437191	NM_012232	HPRD:04433	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
19-PTNLD28-TUMOR_peak_96373	chr7	151012211	151012366	+	20.21754	NA	Intergenic	Intergenic	-26559	NM_016118	51667	Hs.647082	NM_016118	HPRD:07450	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin-like proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_6972	chr1	153513289	153513498	+	20.21547	NA	intron (NM_002962, intron 2 of 3)	intron (NM_002962, intron 2 of 3)	848	NM_002962	6276	Hs.2960	NM_002962	HPRD:01506	S100A5	S100D	S100 calcium binding protein A5	protein-coding
19-PTNLD28-TUMOR_peak_77280	chr4	141344342	141344634	+	20.20998	NA	intron (NM_004362, intron 1 of 14)	L1MB3|LINE|L1	4327	NM_001130675	1047	Hs.86368	NM_004362	HPRD:03513	CLGN	-	calmegin	protein-coding
19-PTNLD28-TUMOR_peak_2970	chr1	43638289	43638476	+	20.20998	NA	promoter-TSS (NM_001159936)	promoter-TSS (NM_001159936)	-141	NM_001159936	10969	Hs.346868	NM_006824	HPRD:16849	EBNA1BP2	EBP2|NOBP|P40	EBNA1 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_83935	chr5	171534659	171534825	+	20.20577	NA	intron (NM_005990, intron 5 of 18)	intron (NM_005990, intron 5 of 18)	80604	NM_005990	6793	Hs.744005	NM_005990	HPRD:06796	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_101397	chr8	141501770	141501939	+	20.20490	NA	Intergenic	Intergenic	-19543	NM_017444	54108	Hs.279704	NM_017444	HPRD:06275	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
19-PTNLD28-TUMOR_peak_6830	chr1	151943255	151943439	+	20.19959	NA	Intergenic	Intergenic	23367	NM_002966	6281	Hs.143873	NM_002966	HPRD:00232	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
19-PTNLD28-TUMOR_peak_73311	chr3	193534486	193534714	+	20.19390	NA	Intergenic	MER5B|DNA|hAT-Charlie	177427	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_45496	chr18	43861234	43861519	+	20.19390	NA	Intergenic	Intergenic	-52811	NM_152470	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_90280	chr6	158663705	158663864	+	20.19390	NA	Intergenic	Intergenic	-69908	NM_001007466	56995	Hs.486993	NM_020245	HPRD:18246	TULP4	TUSP	tubby like protein 4	protein-coding
19-PTNLD28-TUMOR_peak_21392	chr11	116658686	116659112	+	20.19390	NA	promoter-TSS (NM_003904)	promoter-TSS (NM_003904)	-160	NM_003904	8882	Hs.7165	NM_003904		ZPR1	ZNF259	ZPR1 zinc finger	protein-coding
19-PTNLD28-TUMOR_peak_20435	chr11	86222166	86222535	+	20.19390	NA	intron (NM_001014811, intron 3 of 13)	L2c|LINE|L2	136572	NM_021827	60494	Hs.144913	NM_021827	HPRD:08032	CCDC81	-	coiled-coil domain containing 81	protein-coding
19-PTNLD28-TUMOR_peak_61806	chr20	48995835	48996109	+	20.19390	NA	Intergenic	Intergenic	-58093	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_64405	chr22	20049020	20049257	+	20.19351	NA	exon (NM_001283116, exon 7 of 9)	exon (NM_001283116, exon 7 of 9)	-18617	NM_022720	54487	Hs.643452	NM_022720	HPRD:09913	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
19-PTNLD28-TUMOR_peak_24317	chr12	52577111	52577629	+	20.18376	NA	intron (NM_182507, intron 2 of 8)	intron (NM_182507, intron 2 of 8)	8414	NM_182507	144501	Hs.140978	NM_182507	HPRD:14068	KRT80	KB20	keratin 80	protein-coding
19-PTNLD28-TUMOR_peak_61724	chr20	48392924	48393138	+	20.17903	NA	Intergenic	Intergenic	-36219	NR_048538	23315	Hs.444202	NM_015266	HPRD:18062	SLC9A8	NHE-8|NHE8	solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8	protein-coding
19-PTNLD28-TUMOR_peak_41922	chr17	45021303	45021466	+	20.17903	NA	Intergenic	Intergenic	20898	NM_004287	9570	Hs.463278	NM_004287	HPRD:04937	GOSR2	Bos1|EPM6|GS27	golgi SNAP receptor complex member 2	protein-coding
19-PTNLD28-TUMOR_peak_17453	chr11	17285421	17285648	+	20.17135	NA	Intergenic	L2b|LINE|L2	-12752	NM_005013	4925	Hs.654599	NM_005013	HPRD:09726	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
19-PTNLD28-TUMOR_peak_74481	chr4	10041835	10042120	+	20.17135	NA	promoter-TSS (NM_001001290)	promoter-TSS (NM_001001290)	-105	NM_001001290	56606	Hs.656895	NM_020041	HPRD:05848	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_91946	chr7	33534885	33535173	+	20.17135	NA	intron (NM_198428, intron 19 of 22)	intron (NM_198428, intron 19 of 22)	365877	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_88350	chr6	74404931	74405096	+	20.16466	NA	promoter-TSS (NM_001159587)	promoter-TSS (NM_001159587)	-795	NM_001159587	135228	Hs.399891	NM_133493	HPRD:10590	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
19-PTNLD28-TUMOR_peak_61628	chr20	47448176	47448455	+	20.15848	NA	Intergenic	Intergenic	-3895	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_14034	chr10	71151022	71151201	+	20.15775	NA	intron (NM_033497, intron 17 of 20)	intron (NM_033497, intron 17 of 20)	25563	NM_001057	6865	Hs.88372	NM_001057	HPRD:01207	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_19169	chr11	64451935	64452249	+	20.15775	NA	intron (NM_138732, intron 5 of 19)	intron (NM_138732, intron 5 of 19)	38568	NM_138732	9379	Hs.372938	NM_015080	HPRD:11859	NRXN2	-	neurexin 2	protein-coding
19-PTNLD28-TUMOR_peak_74761	chr4	23932406	23932806	+	20.15775	NA	Intergenic	Intergenic	-40906	NM_013261	10891	Hs.527078	NM_013261	HPRD:05155	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_85551	chr6	14500151	14500360	+	20.15230	NA	Intergenic	Intergenic	-214570	NR_108096	102216342	Hs.563409	NR_108096		LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
19-PTNLD28-TUMOR_peak_1359	chr1	22231383	22231617	+	20.15230	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	32290	NM_001291860	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_37726	chr16	49910555	49910873	+	20.15230	NA	Intergenic	CpG	-18884	NM_001271620	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_30504	chr14	57810237	57810442	+	20.15230	NA	Intergenic	L1PA3|LINE|L1	-46932	NM_001011713	122830	Hs.165465	NM_001011713		NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_50044	chr19	51530800	51530982	+	20.15134	NA	promoter-TSS (NM_144947)	promoter-TSS (NM_144947)	-6	NM_144947	11012	Hs.57771	NM_006853	HPRD:05114	KLK11	PRSS20|TLSP	kallikrein-related peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_64005	chr21	46347543	46347847	+	20.14523	NA	intron (NR_038311, intron 4 of 4)	intron (NR_038311, intron 4 of 4)	1058	NM_001127491	3689	Hs.375957	NM_000211	HPRD:02506	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)	protein-coding
19-PTNLD28-TUMOR_peak_35462	chr15	100244707	100244922	+	20.13930	NA	intron (NM_001130927, intron 7 of 9)	intron (NM_001130927, intron 7 of 9)	28776	NM_001284418	145748	Hs.562568	NM_152449	HPRD:08153	LYSMD4	-	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_74925	chr4	37455072	37455604	+	20.13930	NA	promoter-TSS (NM_001104629)	promoter-TSS (NM_001104629)	-214	NM_001104629	55286	Hs.107527	NM_018302	HPRD:07725	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
19-PTNLD28-TUMOR_peak_75518	chr4	62328438	62328670	+	20.13930	NA	Intergenic	Intergenic	-34285	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_73226	chr3	191134911	191135094	+	20.13930	NA	Intergenic	Intergenic	-8311	NR_120606	103344926		NR_120606		LINCR-0002	-	uncharacterized LincR-0002	ncRNA
19-PTNLD28-TUMOR_peak_58573	chr2	223019776	223020345	+	20.13930	NA	Intergenic	L1PA2|LINE|L1	-142806	NM_153038	151278	Hs.350729	NM_153038	HPRD:08132	CCDC140	-	coiled-coil domain containing 140	protein-coding
19-PTNLD28-TUMOR_peak_52978	chr2	61935207	61935440	+	20.13930	NA	Intergenic	Intergenic	145955	NR_037710	84140	Hs.440466	NM_032180	ENSG00000170264	FAM161A	RP28	family with sequence similarity 161, member A	protein-coding
19-PTNLD28-TUMOR_peak_88942	chr6	106164452	106164593	+	20.13930	NA	Intergenic	L1PA3|LINE|L1	-313523	NM_002726	5550	Hs.436564	NM_002726	HPRD:02673	PREP	PE|PEP	prolyl endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_32699	chr15	28323464	28323732	+	20.13730	NA	intron (NM_001300984, intron 2 of 22)	MLT1F2|LTR|ERVL-MaLR	20860	NM_001300984	4948	Hs.654411	NM_000275	HPRD:01945	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
19-PTNLD28-TUMOR_peak_64932	chr22	28329201	28329491	+	20.13730	NA	intron (NR_026963, intron 1 of 4)	LTR71A|LTR|ERV1	-12746	NR_036169	100423034		NR_036169	miRBase:MI0014247	MIR3199-1	-	microRNA 3199-1	ncRNA
19-PTNLD28-TUMOR_peak_91805	chr7	29615066	29615306	+	20.13730	NA	Intergenic	Intergenic	11759	NM_175887	222171	Hs.91109	NM_175887	HPRD:14136	PRR15	-	proline rich 15	protein-coding
19-PTNLD28-TUMOR_peak_20709	chr11	95745298	95745596	+	20.13730	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-88076	NM_016156	8898	Hs.181326	NM_016156	HPRD:04650	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_67283	chr3	27753642	27753797	+	20.13730	NA	Intergenic	Intergenic	10487	NM_001278182	8320	Hs.591663	NM_005442	HPRD:07054	EOMES	TBR2	eomesodermin	protein-coding
19-PTNLD28-TUMOR_peak_36498	chr16	15587812	15587995	+	20.13677	NA	intron (NM_033201, intron 1 of 5)	intron (NM_033201, intron 1 of 5)	-8220	NM_001142469	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_81547	chr5	111652474	111652828	+	20.12998	NA	intron (NM_022140, intron 1 of 22)	MLT1H1|LTR|ERVL-MaLR	88671	NR_110559	101927023	Hs.571002	NR_110559		LOC101927023	-	uncharacterized LOC101927023	ncRNA
19-PTNLD28-TUMOR_peak_6646	chr1	149934068	149934207	+	20.12944	NA	intron (NM_020205, intron 6 of 11)	intron (NM_020205, intron 6 of 11)	-25346	NM_001145862	10903	Hs.425144	NM_006697	HPRD:16748	MTMR11	CRA	myotubularin related protein 11	protein-coding
19-PTNLD28-TUMOR_peak_82213	chr5	133519975	133520104	+	20.12944	NA	Intergenic	Intergenic	-7315	NM_006930	6500	Hs.171626	NM_006930		SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_92155	chr7	41982675	41982891	+	20.12944	NA	Intergenic	Intergenic	-240077	NM_002192	3624	Hs.583348	NM_002192		INHBA	EDF|FRP	inhibin, beta A	protein-coding
19-PTNLD28-TUMOR_peak_74139	chr4	5976086	5976368	+	20.12944	NA	Intergenic	MIR3|SINE|MIR	-51172	NR_039608	100616201		NR_039608	miRBase:MI0016749	MIR378D1	-	microRNA 378d-1	ncRNA
19-PTNLD28-TUMOR_peak_55602	chr2	129124323	129124606	+	20.11353	NA	Intergenic	Intergenic	-48293	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_10884	chr1	232674436	232674643	+	20.10734	NA	Intergenic	Intergenic	-23296	NM_020808	57568	Hs.745009	NM_020808	HPRD:15346	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
19-PTNLD28-TUMOR_peak_41520	chr17	40481506	40481778	+	20.10734	NA	exon (NM_003150, exon 13 of 24)	exon (NM_003150, exon 13 of 24)	41568	NM_001288720	6776	Hs.437058	NM_003152	HPRD:03301	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
19-PTNLD28-TUMOR_peak_105235	chr9	110796764	110797197	+	20.10102	NA	Intergenic	Intergenic	-544933	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_63943	chr21	45705507	45705681	+	20.10102	NA	promoter-TSS (NM_000383)	promoter-TSS (NM_000383)	-127	NM_000383	326	Hs.129829	NM_000383	HPRD:06301	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
19-PTNLD28-TUMOR_peak_79562	chr5	38258938	38259108	+	20.10102	NA	intron (NM_001205301, intron 1 of 22)	CpG	512	NM_152403	133584	Hs.20103	NM_152403	HPRD:13433	EGFLAM	AGRINL|AGRNL|PIKA	EGF-like, fibronectin type III and laminin G domains	protein-coding
19-PTNLD28-TUMOR_peak_75443	chr4	57843052	57843416	+	20.09914	NA	exon (NM_032313, exon 1 of 7)	exon (NM_032313, exon 1 of 7)	592	NM_032313	84273	Hs.8715	NM_032313		NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
19-PTNLD28-TUMOR_peak_70309	chr3	124271166	124271384	+	20.09851	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-32231	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_78232	chr4	184276674	184276929	+	20.09851	NA	Intergenic	Intergenic	-33222	NM_001185149	100132463	Hs.727475	NM_001185149	ENSG00000185758	CLDN24	CLDN21	claudin 24	protein-coding
19-PTNLD28-TUMOR_peak_55155	chr2	115163290	115163809	+	20.09851	NA	Intergenic	Intergenic	-36350	NM_020868	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_68428	chr3	54081039	54081308	+	20.09851	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-75520	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_74459	chr4	9837080	9837345	+	20.09851	NA	intron (NM_001001290, intron 11 of 12)	intron (NM_001001290, intron 11 of 12)	53954	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_68113	chr3	49384233	49384655	+	20.08815	NA	Intergenic	Intergenic	-6908	NM_003363	7375	Hs.77500	NM_003363	HPRD:04598	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
19-PTNLD28-TUMOR_peak_85617	chr6	15906082	15906428	+	20.08815	NA	Intergenic	Intergenic	-223062	NM_013262	29116	Hs.484738	NM_013262	HPRD:17621	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_70774	chr3	129863230	129863629	+	20.08815	NA	Intergenic	HERVE-int|LTR|ERV1	-33153	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31251	chr14	74262801	74263004	+	20.07498	NA	intron (NR_109995, intron 2 of 2)	intron (NR_109995, intron 2 of 2)	8839	NR_109995	100506476	Hs.287299	NR_109995		LOC100506476	-	uncharacterized LOC100506476	ncRNA
19-PTNLD28-TUMOR_peak_40288	chr17	15466460	15467173	+	20.07498	NA	non-coding (NR_037924, exon 1 of 6)	non-coding (NR_037924, exon 1 of 6)	129	NR_037924	100533496	Hs.164595	NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2-CDRT4	TVP23C-CDRT4 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_3985	chr1	62596895	62597046	+	20.07498	NA	intron (NM_176877, intron 41 of 42)	intron (NM_176877, intron 41 of 42)	-63504	NM_001164835	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63121	chr21	32637731	32637937	+	20.07498	NA	intron (NM_003253, intron 5 of 28)	intron (NM_003253, intron 5 of 28)	-227039	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_38975	chr16	81527349	81527571	+	20.07498	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-1494	NM_030629	80790	Hs.594095	NM_030629	HPRD:10839	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_2367	chr1	36192576	36192712	+	20.07498	NA	Intergenic	Intergenic	-7854	NM_152374	127703	Hs.112023	NM_152374	HPRD:08798	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
19-PTNLD28-TUMOR_peak_33221	chr15	41171145	41171308	+	20.07498	NA	Intergenic	Intergenic	-4739	NM_133639	171177	Hs.447901	NM_133639	HPRD:10191	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
19-PTNLD28-TUMOR_peak_33802	chr15	60095943	60096172	+	20.07498	NA	Intergenic	L1PA4|LINE|L1	-114415	NM_004330	663	Hs.592515	NM_004330	HPRD:04481	BNIP2	BNIP-2|NIP2	BCL2/adenovirus E1B 19kDa interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_28716	chr13	95951610	95951779	+	20.07024	NA	intron (NM_001105515, intron 1 of 20)	intron (NM_001105515, intron 1 of 20)	1993	NM_001105515	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_60940	chr20	36796473	36796645	+	20.07024	NA	Intergenic	Intergenic	-2859	NM_198951	7052	Hs.517033	NM_004613	HPRD:01825	TGM2	G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC	transglutaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_23145	chr12	13075129	13075426	+	20.06517	NA	Intergenic	Intergenic	6514	NR_030345	693199		NR_030345	miRBase:MI0003627	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
19-PTNLD28-TUMOR_peak_58444	chr2	219718611	219718766	+	20.06517	NA	Intergenic	L2b|LINE|L2	-5858	NM_006522	7475	Hs.29764	NM_006522	HPRD:05233	WNT6	-	wingless-type MMTV integration site family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_66565	chr3	10857670	10858203	+	20.06517	NA	promoter-TSS (NM_014229)	promoter-TSS (NM_014229)	19	NM_014229	6538	Hs.657405	NM_014229		SLC6A11	GAT-3|GAT3|GAT4	solute carrier family 6 (neurotransmitter transporter), member 11	protein-coding
19-PTNLD28-TUMOR_peak_92844	chr7	64034932	64035350	+	20.06517	NA	promoter-TSS (NR_077227)	promoter-TSS (NR_077227)	68	NR_077227	100128885	Hs.586332	NR_077227		LOC100128885	-	uncharacterized LOC100128885	ncRNA
19-PTNLD28-TUMOR_peak_66692	chr3	12823980	12824356	+	20.06517	NA	Intergenic	MER66D|LTR|ERV1	-13212	NM_001284406	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_68369	chr3	52901295	52901729	+	20.05651	NA	intron (NM_198563, intron 1 of 8)	intron (NM_198563, intron 1 of 8)	-20944	NR_107031	102465866		NR_107031		MIR8064	hsa-mir-8064	microRNA 8064	ncRNA
19-PTNLD28-TUMOR_peak_106235	chr9	130844543	130844795	+	20.05651	NA	intron (NM_001006641, intron 1 of 9)	intron (NM_001006641, intron 1 of 9)	-9074	NM_001265614	114789	Hs.5476	NM_052901	HPRD:10573	SLC25A25	MCSC|PCSCL|SCAMC-2	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	protein-coding
19-PTNLD28-TUMOR_peak_71812	chr3	153002983	153003394	+	20.05651	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	123187	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_24464	chr12	53645396	53645827	+	20.05651	NA	promoter-TSS (NM_032889)	promoter-TSS (NM_032889)	241	NM_001170790	84975	Hs.654660	NM_032889	HPRD:14416	MFSD5	hsMOT2	major facilitator superfamily domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_1777	chr1	27817025	27817206	+	20.05651	NA	promoter-TSS (NM_006990)	promoter-TSS (NM_006990)	-437	NM_001201404	10163	Hs.469244	NM_006990	HPRD:05796	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_79400	chr5	33479417	33479769	+	20.05444	NA	Intergenic	Intergenic	38711	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_48861	chr19	38570631	38570907	+	20.05444	NA	intron (NM_015073, intron 2 of 21)	intron (NM_015073, intron 2 of 21)	144121	NM_001289978	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_63812	chr21	44432798	44432947	+	20.05444	NA	intron (NM_004571, intron 4 of 10)	MIRb|SINE|MIR	38252	NM_004571	5316	Hs.431043	NM_004571	HPRD:03653	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_41130	chr17	34763970	34764134	+	20.05444	NA	intron (NM_032258, intron 13 of 13).2	AluSg|SINE|Alu	-7045	NM_001123392	729877	Hs.105891	NM_001123392	ENSG00000242384	TBC1D3H	-	TBC1 domain family, member 3H	protein-coding
19-PTNLD28-TUMOR_peak_21749	chr11	122636503	122636772	+	20.05444	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	-72618	NM_019604	56253	Hs.159523	NM_019604	HPRD:16760	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
19-PTNLD28-TUMOR_peak_98307	chr8	38814954	38815365	+	20.05444	NA	intron (NM_021623, intron 10 of 12)	intron (NM_021623, intron 10 of 12)	-16509	NM_153692	203100	Hs.661014	NM_153692	HPRD:08818	HTRA4	-	HtrA serine peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_88963	chr6	106994664	106995169	+	20.05444	NA	intron (NM_001624, intron 11 of 19)	intron (NM_001624, intron 11 of 19)	35186	NM_001624	202	Hs.724262	NM_001624	HPRD:18576	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
19-PTNLD28-TUMOR_peak_89356	chr6	125533602	125533806	+	20.05444	NA	intron (NM_001292026, intron 1 of 4)	intron (NM_001292026, intron 1 of 4)	58284	NM_001003395	7164	Hs.591347	NM_003287	HPRD:07236	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
19-PTNLD28-TUMOR_peak_109322	chrX	119378548	119378884	+	20.05444	NA	non-coding (NR_027131, exon 1 of 3)	non-coding (NR_027131, exon 1 of 3)	406	NR_027131	158801	Hs.442518	NM_173522	HPRD:06560	NKAPP1	CXorf42	NFKB activating protein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_47690	chr19	15181264	15181406	+	20.04256	NA	Intergenic	LTR7C|LTR|ERV1	-16542	NM_001004713	126370	Hs.631610	NM_001004713	HPRD:14915	OR1I1	OR19-20|OR1I1P|OR1I1Q	olfactory receptor, family 1, subfamily I, member 1	protein-coding
19-PTNLD28-TUMOR_peak_74510	chr4	10607392	10607650	+	20.04256	NA	intron (NM_052964, intron 2 of 18)	Tigger3b|DNA|TcMar-Tigger	78865	NM_052964	116449	Hs.678910	NM_052964		CLNK	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
19-PTNLD28-TUMOR_peak_65301	chr22	36291088	36291266	+	20.04256	NA	intron (NM_001082579, intron 2 of 13)	intron (NM_001082579, intron 2 of 13)	-54547	NM_014309	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_13238	chr10	44175070	44175353	+	20.04256	NA	Intergenic	Intergenic	-30885	NM_006973	7580	Hs.522885	NM_006973	HPRD:01924	ZNF32	KOX30	zinc finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_42900	chr17	62690399	62690657	+	20.04256	NA	Intergenic	L3|LINE|CR1	-32142	NM_022739	64750	Hs.515011	NM_022739		SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_68007	chr3	48031499	48031828	+	20.04256	NA	intron (NM_002375, intron 2 of 18)	intron (NM_002375, intron 2 of 18)	99106	NM_030885	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_26141	chr12	108851081	108851258	+	20.04256	NA	Intergenic	Intergenic	16297	NR_120483	102723562	Hs.455693	NR_120483		LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
19-PTNLD28-TUMOR_peak_94087	chr7	97123554	97123845	+	20.04256	NA	Intergenic	Intergenic	-237572	NM_003182	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_5252	chr1	105206944	105207109	+	20.04256	NA	Intergenic	L1PA3|LINE|L1	591381	NR_033990	100129138	Hs.514487	NR_033990	ENSG00000215869	LOC100129138	-	THAP domain containing, apoptosis associated protein 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_84161	chr5	174337340	174337497	+	20.04256	NA	Intergenic	Intergenic	85316	NR_046113	441116	Hs.533036	NM_001004348	HPRD:16911	FLJ16171	-	FLJ16171 protein	ncRNA
19-PTNLD28-TUMOR_peak_26425	chr12	113709750	113709934	+	20.04256	NA	intron (NM_017901, intron 7 of 27)	intron (NM_017901, intron 7 of 27)	-19486	NR_106820	102465457		NR_106820		MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
19-PTNLD28-TUMOR_peak_89617	chr6	137554877	137555399	+	20.03966	NA	Intergenic	Intergenic	-14571	NM_000416	3459	Hs.520414	NM_000416	HPRD:00127	IFNGR1	CD119|IFNGR	interferon gamma receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_16575	chr11	1507315	1507577	+	20.03966	NA	intron (NM_001172223, intron 1 of 4)	intron (NM_001172223, intron 1 of 4)	563	NM_001172223	81532	Hs.370360	NM_053005		MOB2	HCCA2	MOB kinase activator 2	protein-coding
19-PTNLD28-TUMOR_peak_92076	chr7	38407737	38408011	+	20.03966	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	26696	NR_040085	100506776	Hs.173034	NR_040085		TRG-AS1	-	T cell receptor gamma locus antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37818	chr16	52148303	52148617	+	20.03966	NA	Intergenic	Intergenic	29267	NR_104655	102467079	Hs.98466	NR_104655		LOC102467079	-	uncharacterized LOC102467079	ncRNA
19-PTNLD28-TUMOR_peak_88615	chr6	86385253	86385427	+	20.03568	NA	Intergenic	AluJo|SINE|Alu	1746	NR_002743	26799		NR_002743	ENSG00000203875	SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
19-PTNLD28-TUMOR_peak_19085	chr11	63609103	63609249	+	20.03330	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	2776	NM_001039469	2011	Hs.567261	NM_004954	HPRD:02753	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	MAP/microtubule affinity-regulating kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_23143	chr12	13063056	13063299	+	20.03159	NA	intron (NM_003979, intron 2 of 3)	intron (NM_003979, intron 2 of 3)	-5586	NR_030345	693199		NR_030345	miRBase:MI0003627	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
19-PTNLD28-TUMOR_peak_30411	chr14	55337223	55337676	+	20.03159	NA	intron (NM_001024070, intron 1 of 6)	L1PA4|LINE|L1	7462	NR_036194	100422984		NR_036194		MIR4308	-	microRNA 4308	ncRNA
19-PTNLD28-TUMOR_peak_21171	chr11	112120747	112121018	+	20.03159	NA	intron (NM_001145024, intron 3 of 3)	intron (NM_001145024, intron 3 of 3)	10701	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_6186	chr1	144301145	144301634	+	20.02081	NA	non-coding (NR_109754, exon 2 of 3)	non-coding (NR_109754, exon 2 of 3)	39370	NR_109754	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA
19-PTNLD28-TUMOR_peak_40353	chr17	16921997	16922272	+	20.00148	NA	Intergenic	Intergenic	-23940	NM_201274	23164	Hs.462341	NM_015134	HPRD:17591	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_87353	chr6	40459800	40460111	+	20.00148	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	95171	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_90157	chr6	155441155	155441422	+	19.99893	NA	intron (NM_012454, intron 1 of 25)	intron (NM_012454, intron 1 of 25)	29865	NM_012454	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_24130	chr12	49730763	49731016	+	19.99893	NA	promoter-TSS (NM_001008223)	promoter-TSS (NM_001008223)	82	NM_001008223	338761	Hs.380386	NM_001008223	HPRD:17350	C1QL4	C1QTNF11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding
19-PTNLD28-TUMOR_peak_27485	chr13	24627658	24627843	+	19.99893	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	73985	NM_001286792	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_101160	chr8	134687010	134687332	+	19.99893	NA	Intergenic	Intergenic	102424	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
19-PTNLD28-TUMOR_peak_82502	chr5	138484091	138484394	+	19.99893	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	49823	NM_022464	64374	Hs.483521	NM_022464	HPRD:12150	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_11169	chr1	236739365	236739556	+	19.99893	NA	intron (NM_018072, intron 22 of 44)	intron (NM_018072, intron 22 of 44)	28381	NM_018072	55127	Hs.708114	NM_018072	HPRD:17569	HEATR1	BAP28|UTP10	HEAT repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_50452	chr19	56697800	56697921	+	19.99893	NA	TTS (NM_001145546)	TTS (NM_001145546)	6561	NM_001080456	342933	Hs.132130	NM_001080456	ENSG00000197213	ZSCAN5B	ZNF371|ZNF495B	zinc finger and SCAN domain containing 5B	protein-coding
19-PTNLD28-TUMOR_peak_7455	chr1	158057201	158057398	+	19.98091	NA	intron (NM_001286349, intron 3 of 12)	intron (NM_001286349, intron 3 of 12)	53131	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_10827	chr1	231328426	231328922	+	19.98091	NA	intron (NM_001300889, intron 3 of 11)	intron (NM_001300889, intron 3 of 11)	-5301	NM_001256615	149373	Hs.632505	NM_001256615		LOC149373	-	uncharacterized LOC149373	protein-coding
19-PTNLD28-TUMOR_peak_37350	chr16	31440075	31440397	+	19.97006	NA	promoter-TSS (NM_005205)	promoter-TSS (NM_005205)	-487	NM_005205	1339	Hs.250760	NM_005205	HPRD:03598	COX6A2	COX6AH|COXVIAH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_56152	chr2	145469141	145469453	+	19.97006	NA	intron (NR_033870, intron 1 of 4)	intron (NR_033870, intron 1 of 4)	43763	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_63150	chr21	33153326	33153485	+	19.97006	NA	Intergenic	Intergenic	-48974	NM_001145444	57466	Hs.17255	NM_020706	HPRD:11551	SCAF4	SFRS15|SRA4	SR-related CTD-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_29933	chr14	36458418	36458775	+	19.97006	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-81037	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_41235	chr17	36612329	36612546	+	19.96809	NA	intron (NM_001199417, intron 1 of 23)	intron (NM_001199417, intron 1 of 23)	27717	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000225485	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
19-PTNLD28-TUMOR_peak_14976	chr10	95751639	95751862	+	19.96650	NA	Intergenic	Intergenic	-1996	NM_016341	51196	Hs.655033	NM_016341	HPRD:07087	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_41697	chr17	42285812	42286053	+	19.96650	NA	promoter-TSS (NR_106840)	promoter-TSS (NR_106840)	-725	NR_106840	102465469		NR_106840		MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
19-PTNLD28-TUMOR_peak_88129	chr6	56705805	56705998	+	19.95566	NA	intron (NM_001144769, intron 4 of 96)	intron (NM_001144769, intron 4 of 96)	2562	NM_183380	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_86311	chr6	28323550	28324135	+	19.95566	NA	intron (NM_001242894, intron 2 of 6)	HERVL18-int|LTR|ERVL	6151	NM_001242894	80317	Hs.380930	NM_024493	HPRD:11705	ZKSCAN3	ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47	zinc finger with KRAB and SCAN domains 3	protein-coding
19-PTNLD28-TUMOR_peak_92429	chr7	47448984	47449140	+	19.95566	NA	intron (NM_022748, intron 13 of 30)	intron (NM_022748, intron 13 of 30)	172680	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_90786	chr7	1013871	1014056	+	19.95566	NA	intron (NM_001031617, intron 1 of 2)	AluJr|SINE|Alu	1272	NM_001031617	90639	Hs.121593	NM_001031617		COX19	-	cytochrome c oxidase assembly homolog 19 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_37134	chr16	29499779	29499914	+	19.95177	NA	Intergenic	Intergenic	-20947	NR_002557	613038	Hs.569585	NR_002557	ENSG00000258130	LOC613038	-	coiled-coil domain containing 101 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_101979	chr9	2781010	2781177	+	19.94884	NA	Intergenic	LTR47A|LTR|ERVL	63037	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_69920	chr3	114270909	114271111	+	19.94884	NA	intron (NR_121662, intron 3 of 6)	AluJr|SINE|Alu	72043	NM_001164347	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_13318	chr10	45960503	45960736	+	19.94884	NA	intron (NM_001282866, intron 3 of 7)	intron (NM_001282866, intron 3 of 7)	-12050	NR_120674	102724323	Hs.559151	NR_120674		LOC102724323	-	uncharacterized LOC102724323	ncRNA
19-PTNLD28-TUMOR_peak_33805	chr15	60209837	60209975	+	19.94884	NA	Intergenic	Intergenic	-86515	NM_012182	27023	Hs.734475	NM_012182	HPRD:07017	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
19-PTNLD28-TUMOR_peak_5568	chr1	112553977	112554164	+	19.94884	NA	Intergenic	Intergenic	20880	NM_001270945	643355	Hs.279714	NM_001270945		LOC643355	-	uncharacterized LOC643355	protein-coding
19-PTNLD28-TUMOR_peak_31674	chr14	91316992	91317161	+	19.94884	NA	Intergenic	L3|LINE|CR1	-34315	NM_001010854	145567	Hs.655697	NM_001010854	HPRD:18503	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
19-PTNLD28-TUMOR_peak_41578	chr17	41069201	41069615	+	19.94884	NA	Intergenic	L5|LINE|RTE	16594	NM_001270397	2538	Hs.212293	NM_000151		G6PC	G6PC1|G6PT|GSD1|GSD1a	glucose-6-phosphatase, catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_98647	chr8	49013973	49014312	+	19.94884	NA	Intergenic	Intergenic	93147	NM_003350	7336	Hs.491695	NM_003350		UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding
19-PTNLD28-TUMOR_peak_109286	chrX	118544383	118544763	+	19.94884	NA	intron (NM_145305, intron 3 of 4)	AluSx1|SINE|Alu	11315	NM_145305	203427	Hs.496658	NM_145305	HPRD:06617	SLC25A43	-	solute carrier family 25, member 43	protein-coding
19-PTNLD28-TUMOR_peak_18006	chr11	34570937	34571152	+	19.93821	NA	Intergenic	Intergenic	-35697	NM_001243080	2001	Hs.11713	NM_001422	HPRD:05525	ELF5	ESE2	E74-like factor 5 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_94454	chr7	101383201	101383347	+	19.93821	NA	Intergenic	Intergenic	-75910	NM_001913	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_95427	chr7	132107341	132107507	+	19.93821	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	153899	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_87756	chr6	45682553	45682932	+	19.93821	NA	Intergenic	Intergenic	222592	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_99645	chr8	98881499	98881961	+	19.93821	NA	intron (NM_002380, intron 1 of 18)	CpG	419	NM_002380	4147	Hs.189445	NM_002380	HPRD:03660	MATN2	-	matrilin 2	protein-coding
19-PTNLD28-TUMOR_peak_74	chr1	873561	873853	+	19.93758	NA	intron (NM_152486, intron 5 of 13)	intron (NM_152486, intron 5 of 13)	12586	NM_152486	148398	Hs.335293	NM_152486	HPRD:10081	SAMD11	-	sterile alpha motif domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_72384	chr3	172325415	172325818	+	19.93758	NA	Intergenic	MLT2B4|LTR|ERVL	-84319	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_73889	chr4	2170312	2170503	+	19.92311	NA	intron (NM_181808, intron 11 of 23)	intron (NM_181808, intron 11 of 23)	60551	NM_181808	353497	Hs.368454	NM_181808	HPRD:17876	POLN	POL4P	polymerase (DNA directed) nu	protein-coding
19-PTNLD28-TUMOR_peak_102962	chr9	36936503	36936740	+	19.92311	NA	intron (NR_104000, intron 6 of 9)	intron (NR_104000, intron 6 of 9)	-43093	NR_039687	100616456		NR_039687		MIR4476	-	microRNA 4476	ncRNA
19-PTNLD28-TUMOR_peak_18845	chr11	61034168	61034471	+	19.92311	NA	intron (NM_152718, intron 16 of 19)	intron (NM_152718, intron 16 of 19)	25690	NM_014224	5222	Hs.432854	NM_014224	HPRD:01356	PGA5	-	pepsinogen 5, group I (pepsinogen A)	protein-coding
19-PTNLD28-TUMOR_peak_8618	chr1	181149198	181149483	+	19.92311	NA	Intergenic	Intergenic	-56184	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_37418	chr16	32630620	32630902	+	19.92311	NA	Intergenic	Intergenic	56687	NM_001205259	653550	Hs.592038	NM_001205259	ENSG00000205457	TP53TG3C	TP53TG3	TP53 target 3C	protein-coding
19-PTNLD28-TUMOR_peak_91302	chr7	12297335	12297573	+	19.92311	NA	Intergenic	L2|LINE|L2	46606	NM_018374	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_8572	chr1	180549503	180549702	+	19.92282	NA	Intergenic	Intergenic	21492	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_103685	chr9	71801766	71802396	+	19.92282	NA	intron (NM_201629, intron 1 of 20)	intron (NM_201629, intron 1 of 20)	13110	NM_001170630	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_52663	chr2	47572176	47572357	+	19.92282	NA	promoter-TSS (NR_110207)	promoter-TSS (NR_110207)	-53	NR_110208	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA
19-PTNLD28-TUMOR_peak_6564	chr1	148853715	148854087	+	19.92220	NA	intron (NR_104217, intron 2 of 17)	intron (NR_104217, intron 2 of 17)	47886	NM_001164261	645142	Hs.730589	NM_001164261	ENSG00000256374	PPIAL4D	-	peptidylprolyl isomerase A (cyclophilin A)-like 4D	protein-coding
19-PTNLD28-TUMOR_peak_29435	chr14	22897074	22897204	+	19.92220	NA	Intergenic	Intergenic	161004	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_50170	chr19	53446175	53446414	+	19.90641	NA	promoter-TSS (NR_037805)	promoter-TSS (NR_037805)	-447	NR_037805	399669	Hs.745445	NM_203307		ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_6701	chr1	150596644	150596918	+	19.90570	NA	3' UTR (NM_207044, exon 3 of 3)	3' UTR (NM_207044, exon 3 of 3)	4828	NM_207045	2029	Hs.632456	NM_004436	HPRD:11927	ENSA	ARPP-19e	endosulfine alpha	protein-coding
19-PTNLD28-TUMOR_peak_40828	chr17	27376073	27376288	+	19.90547	NA	intron (NM_016518, intron 2 of 7)	intron (NM_016518, intron 2 of 7)	6262	NM_016518	51268	Hs.462585	NM_016518	HPRD:17853	PIPOX	LPIPOX	pipecolic acid oxidase	protein-coding
19-PTNLD28-TUMOR_peak_101545	chr8	143703398	143703552	+	19.90547	NA	Intergenic	Intergenic	-7642	NM_015193	23237	Hs.40888	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_60369	chr20	29611577	29612068	+	19.90306	NA	promoter-TSS (NR_003579)	promoter-TSS (NR_003579)	-57	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_55124	chr2	114359580	114359706	+	19.89871	NA	promoter-TSS (NR_024005)	promoter-TSS (NR_024005)	-490	NR_024005	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
19-PTNLD28-TUMOR_peak_70424	chr3	125439165	125439755	+	19.89345	NA	Intergenic	HERVE-int|LTR|ERV1	69935	NR_031687	100302204		NR_031687	miRBase:MI0006421	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1	microRNA 548i-1	ncRNA
19-PTNLD28-TUMOR_peak_21300	chr11	114219082	114219279	+	19.89342	NA	Intergenic	HERV17-int|LTR|ERV1	31581	NR_120567	101928940	Hs.409846	NR_120567	ENSG00000256195	LOC101928940	-	uncharacterized LOC101928940	ncRNA
19-PTNLD28-TUMOR_peak_46802	chr19	4556100	4556489	+	19.89342	NA	intron (NM_032108, intron 5 of 16)	intron (NM_032108, intron 5 of 16)	3477	NM_032108	10501	Hs.465642	NM_020241	HPRD:12322	SEMA6B	SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding
19-PTNLD28-TUMOR_peak_59167	chr2	239870167	239870358	+	19.88675	NA	Intergenic	Intergenic	-22297	NR_034162	401039	Hs.516791	NM_001001698	HPRD:16969	FLJ43879	-	FLJ43879 protein	ncRNA
19-PTNLD28-TUMOR_peak_57646	chr2	198049776	198050275	+	19.88675	NA	intron (NM_001195144, intron 2 of 27)	intron (NM_001195144, intron 2 of 27)	117218	NR_046837	101927547	Hs.687027	NR_046837		ANKRD44-IT1	-	ANKRD44 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_39829	chr17	4699338	4699526	+	19.88675	NA	promoter-TSS (NM_001270481)	promoter-TSS (NM_001270481)	-7	NM_002798	5694	Hs.77060	NM_002798	HPRD:02630	PSMB6	DELTA|LMPY|Y	proteasome (prosome, macropain) subunit, beta type, 6	protein-coding
19-PTNLD28-TUMOR_peak_88605	chr6	86192884	86193062	+	19.88675	NA	intron (NM_002526, intron 3 of 8)	intron (NM_002526, intron 3 of 8)	33671	NM_002526	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_99015	chr8	66845821	66845997	+	19.88675	NA	Intergenic	L2b|LINE|L2	-87882	NM_033105	85479	Hs.491885	NM_033105	HPRD:07474	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
19-PTNLD28-TUMOR_peak_91696	chr7	25887399	25887560	+	19.88675	NA	Intergenic	Intergenic	-6849	NR_046486	100873753		NR_046486		RNU6-16P	RNU6-16	RNA, U6 small nuclear 16, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_72371	chr3	172194864	172195362	+	19.88675	NA	Intergenic	Intergenic	-28867	NM_004122	2693	Hs.130212	NM_004122	HPRD:03541	GHSR	-	growth hormone secretagogue receptor	protein-coding
19-PTNLD28-TUMOR_peak_59883	chr20	14200690	14201136	+	19.88675	NA	intron (NM_080676, intron 3 of 16)	L1PB1|LINE|L1	117400	NM_198391	23767	Hs.41296	NM_013281	HPRD:05313	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_66160	chr3	397410	397652	+	19.88675	NA	intron (NM_001253387, intron 10 of 26)	MIR|SINE|MIR	29947	NR_110739	101927193	Hs.677744	NR_110739		CHL1-AS1	-	CHL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_68286	chr3	51740863	51741031	+	19.88675	NA	promoter-TSS (NM_000839)	promoter-TSS (NM_000839)	-134	NM_001130063	2912	Hs.121510	NM_000839	HPRD:04977	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate receptor, metabotropic 2	protein-coding
19-PTNLD28-TUMOR_peak_9443	chr1	203495817	203495972	+	19.88675	NA	Intergenic	Intergenic	32623	NM_014359	26254	Hs.632468	NM_014359	HPRD:05498	OPTC	OPT	opticin	protein-coding
19-PTNLD28-TUMOR_peak_13453	chr10	48546826	48546998	+	19.88675	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-107774	NM_004962	2662	Hs.2171	NM_004962	HPRD:03218	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
19-PTNLD28-TUMOR_peak_94629	chr7	104431588	104431855	+	19.88675	NA	intron (NM_199000, intron 2 of 2)	intron (NM_199000, intron 2 of 2)	12818	NR_034141	645591	Hs.658835	NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55327	chr2	120996391	120996573	+	19.88655	NA	Intergenic	Intergenic	-13932	NM_002881	5899	Hs.469820	NM_002881	HPRD:01550	RALB	-	v-ral simian leukemia viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_18806	chr11	60681286	60681444	+	19.88655	NA	promoter-TSS (NM_024092)	promoter-TSS (NM_024092)	-6	NM_024092	79073	Hs.13662	NM_024092	HPRD:14687	TMEM109	-	transmembrane protein 109	protein-coding
19-PTNLD28-TUMOR_peak_86642	chr6	31686157	31686353	+	19.88383	NA	TTS (NM_025261).2	TTS (NM_025261).2	3122	NM_021246	58530	Hs.591792	NM_021246	HPRD:16192	LY6G6D	C6orf23|G6D|LY6-D|MEGT1|NG25	lymphocyte antigen 6 complex, locus G6D	protein-coding
19-PTNLD28-TUMOR_peak_22510	chr12	3067759	3068082	+	19.87949	NA	promoter-TSS (NM_003213)	promoter-TSS (NM_003213)	-558	NM_003213	7004	Hs.94865	NM_003213	HPRD:03421	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_3821	chr1	59280317	59280474	+	19.87949	NA	intron (NR_108106, intron 1 of 1)	CpG	29572	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_82256	chr5	133927103	133927268	+	19.87745	NA	Intergenic	Intergenic	41348	NM_001033503	51128	Hs.432984	NM_016103	HPRD:09647	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated, Ras related GTPase 1B	protein-coding
19-PTNLD28-TUMOR_peak_50415	chr19	56143073	56143319	+	19.87745	NA	Intergenic	L2a|LINE|L2	-7255	NM_203374	147808	Hs.53996	NM_203374	HPRD:14076	ZNF784	-	zinc finger protein 784	protein-coding
19-PTNLD28-TUMOR_peak_82203	chr5	133460818	133461190	+	19.87701	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	9654	NR_033449	6932	Hs.573153	NM_003202	HPRD:01797	TCF7	TCF-1	transcription factor 7 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_59478	chr20	1972878	1973319	+	19.87536	NA	intron (NM_001190899, intron 1 of 2)	intron (NM_001190899, intron 1 of 2)	354	NM_001190892	5173	Hs.22584	NM_024411	HPRD:08838	PDYN	ADCA|PENKB|SCA23	prodynorphin	protein-coding
19-PTNLD28-TUMOR_peak_3179	chr1	46195832	46196011	+	19.87536	NA	intron (NM_001145349, intron 3 of 9)	AluJb|SINE|Alu	20564	NM_001145349	3652	Hs.744252	NM_005897	HPRD:00940	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_26152	chr12	109011974	109012119	+	19.87536	NA	Intergenic	Intergenic	13808	NM_001206609	6404	Hs.591014	NM_003006	HPRD:02845	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
19-PTNLD28-TUMOR_peak_63910	chr21	45411626	45411942	+	19.87536	NA	Intergenic	Intergenic	-20422	NM_003274	7109	Hs.126221	NM_003274	HPRD:03656	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
19-PTNLD28-TUMOR_peak_39332	chr16	88227725	88227889	+	19.87536	NA	promoter-TSS (NR_110944)	promoter-TSS (NR_110944)	-80	NR_110944	101928880	Hs.634835	NR_110944	ENSG00000260420	LOC101928880	LA16c-444G7.2	uncharacterized LOC101928880	ncRNA
19-PTNLD28-TUMOR_peak_35384	chr15	98445703	98445988	+	19.86476	NA	Intergenic	Intergenic	-28186	NR_024173	91948	Hs.130423	NR_024172	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
19-PTNLD28-TUMOR_peak_65932	chr22	46001213	46001471	+	19.86476	NA	Intergenic	Intergenic	-66336	NM_001167621	25814	Hs.475125	NM_013236	HPRD:04624	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding
19-PTNLD28-TUMOR_peak_103022	chr9	37964127	37964301	+	19.86476	NA	intron (NM_003028, intron 3 of 5)	intron (NM_003028, intron 3 of 5)	-59864	NR_024873	92014	Hs.634120	NM_033412	HPRD:14370	SLC25A51	CG7943|MCART1	solute carrier family 25, member 51	protein-coding
19-PTNLD28-TUMOR_peak_19669	chr11	69354637	69354835	+	19.86476	NA	Intergenic	Intergenic	54407	NR_120545	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_2728	chr1	40707518	40707762	+	19.85603	NA	Intergenic	Intergenic	-5933	NM_001008740	127391	Hs.406265	NM_001008740	HPRD:18369	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
19-PTNLD28-TUMOR_peak_89900	chr6	148899415	148899702	+	19.85603	NA	Intergenic	Intergenic	-168713	NM_005715	10090	Hs.657370	NM_005715	HPRD:10298	UST	2OST	uronyl-2-sulfotransferase	protein-coding
19-PTNLD28-TUMOR_peak_63065	chr21	30527805	30528211	+	19.85603	NA	intron (NM_001286622, intron 7 of 8)	intron (NM_001286622, intron 7 of 8)	10128	NM_001286624	56911	Hs.222802	NM_020152	HPRD:10764	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_42472	chr17	55208394	55208558	+	19.85603	NA	Intergenic	Intergenic	45341	NM_001242902	8165	Hs.463506	NM_003488	HPRD:03905	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A kinase (PRKA) anchor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22560	chr12	3680588	3680757	+	19.85603	NA	intron (NM_001256536, intron 6 of 9)	intron (NM_001256536, intron 6 of 9)	80308	NM_019854	56341	Hs.504530	NM_019854	HPRD:11029	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_67810	chr3	44726878	44727237	+	19.85603	NA	Intergenic	CpG	-27078	NM_001134442	91392	Hs.224843	NM_033210	HPRD:15810	ZNF502	-	zinc finger protein 502	protein-coding
19-PTNLD28-TUMOR_peak_99322	chr8	81610867	81611150	+	19.85603	NA	intron (NM_001033723, intron 2 of 8)	intron (NM_001033723, intron 2 of 8)	176008	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
19-PTNLD28-TUMOR_peak_71551	chr3	147663787	147664060	+	19.85603	NA	Intergenic	Intergenic	524809	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_70667	chr3	128722718	128722912	+	19.85552	NA	exon (NM_024768, exon 2 of 8)	exon (NM_024768, exon 2 of 8)	2343	NM_024768	79825	Hs.134807	NM_024768	HPRD:08569	EFCC1	C3orf73|CCDC48	EF-hand and coiled-coil domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_106852	chr9	140318305	140318499	+	19.85291	NA	promoter-TSS (NM_017820)	promoter-TSS (NM_017820)	555	NM_006647	10811	Hs.495554	NM_006647	HPRD:17644	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
19-PTNLD28-TUMOR_peak_56556	chr2	159994089	159994620	+	19.84983	NA	intron (NM_001145909, intron 5 of 26)	intron (NM_001145909, intron 5 of 26)	-48992	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_97577	chr8	22246187	22246363	+	19.84948	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	21225	NM_001135153	23516	Hs.491232	NM_015359	HPRD:12288	SLC39A14	LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 (zinc transporter), member 14	protein-coding
19-PTNLD28-TUMOR_peak_96939	chr8	6758456	6758863	+	19.84820	NA	Intergenic	Intergenic	-23130	NM_005218	1672	Hs.32949	NM_005218	HPRD:03634	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_80696	chr5	73690768	73691045	+	19.84820	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	72595	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
19-PTNLD28-TUMOR_peak_21293	chr11	114151444	114151834	+	19.84546	NA	Intergenic	Intergenic	-14896	NM_006169	4837	Hs.503911	NM_006169	HPRD:02478	NNMT	-	nicotinamide N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_9362	chr1	202659023	202659211	+	19.82505	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	20434	NM_177402	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_47332	chr19	11529184	11529517	+	19.81904	NA	exon (NM_001035223, exon 2 of 19)	exon (NM_001035223, exon 2 of 19)	668	NM_001161616	57139	Hs.375142	NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator-like 3	protein-coding
19-PTNLD28-TUMOR_peak_51078	chr2	10567535	10568146	+	19.81904	NA	TTS (NM_001258359)	TTS (NM_001258359)	19135	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
19-PTNLD28-TUMOR_peak_26087	chr12	107796300	107796620	+	19.81259	NA	intron (NM_001018072, intron 1 of 16)	intron (NM_001018072, intron 1 of 16)	84263	NM_001018072	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_92241	chr7	44059877	44060256	+	19.81160	NA	Intergenic	LTR13|LTR|ERVK	-1318	NR_003655	84820	Hs.657028	NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15730	chr10	115472533	115472876	+	19.80697	NA	intron (NM_001267058, intron 1 of 5)	LTR9|LTR|ERV1	3600	NM_001267058	840	Hs.9216	NM_001227	HPRD:03457	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_34026	chr15	65677809	65678172	+	19.80697	NA	intron (NM_020962, intron 18 of 19)	intron (NM_020962, intron 18 of 19)	-7612	NM_004884	9543	Hs.128292	NM_004884	HPRD:09169	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily, DCC subclass, member 3	protein-coding
19-PTNLD28-TUMOR_peak_65683	chr22	41814092	41814349	+	19.80626	NA	Intergenic	Intergenic	28807	NM_016272	10766	Hs.474978	NM_016272	HPRD:09583	TOB2	TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
19-PTNLD28-TUMOR_peak_3842	chr1	59485974	59486132	+	19.80626	NA	promoter-TSS (NR_110626)	promoter-TSS (NR_110626)	-95	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
19-PTNLD28-TUMOR_peak_74329	chr4	8244027	8244197	+	19.80626	NA	Intergenic	Intergenic	-27380	NM_001297559	94031	Hs.479119	NM_053044	HPRD:08821	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_94396	chr7	100825815	100826062	+	19.80626	NA	Intergenic	Intergenic	-2381	NM_198571	375607	Hs.213044	NM_198571	HPRD:13434	NAT16	C7orf52	N-acetyltransferase 16 (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_16741	chr11	3438251	3438452	+	19.80610	NA	Intergenic	Intergenic	-25206	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88286	chr6	73331639	73332135	+	19.80586	NA	5' UTR (NM_001160130, exon 1 of 13)	5' UTR (NM_001160130, exon 1 of 13)	316	NM_001160134	56479	Hs.445324	NM_019842	HPRD:16241	KCNQ5	Kv7.5	potassium voltage-gated channel, KQT-like subfamily, member 5	protein-coding
19-PTNLD28-TUMOR_peak_100925	chr8	130688742	130689313	+	19.80586	NA	Intergenic	L2a|LINE|L2	110107	NM_031415	56169	Hs.133244	NM_031415	HPRD:12222	GSDMC	MLZE	gasdermin C	protein-coding
19-PTNLD28-TUMOR_peak_44508	chr18	9719386	9719702	+	19.80575	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	11316	NM_006868	11031	Hs.99528	NM_006868	HPRD:05751	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_81770	chr5	121412491	121412963	+	19.80575	NA	5' UTR (NM_001178102, exon 1 of 6)	5' UTR (NM_001178102, exon 1 of 6)	191	NM_001178102	4015	Hs.102267	NM_002317	HPRD:01087	LOX	-	lysyl oxidase	protein-coding
19-PTNLD28-TUMOR_peak_15682	chr10	114135851	114136073	+	19.80440	NA	promoter-TSS (NM_016234)	promoter-TSS (NM_016234)	6	NM_016234	51703	Hs.11638	NM_016234	HPRD:16139	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long-chain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_108411	chrX	54466492	54467039	+	19.80440	NA	promoter-TSS (NM_058163)	promoter-TSS (NM_058163)	-88	NM_058163	90121	Hs.522662	NM_058163	HPRD:06493	TSR2	DT1P1A10|WGG1	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_19987	chr11	73834049	73834218	+	19.80440	NA	exon (NM_015531, exon 8 of 31)	exon (NM_015531, exon 8 of 31)	47931	NM_001286577	26005	Hs.557938	NM_015531	HPRD:16811	C2CD3	-	C2 calcium-dependent domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_66142	chr22	51113306	51113720	+	19.80440	NA	exon (NM_033517, exon 2 of 22)	exon (NM_033517, exon 2 of 22)	443	NM_033517	85358	Hs.149035	NM_033517	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
19-PTNLD28-TUMOR_peak_102280	chr9	16062920	16063241	+	19.80440	NA	Intergenic	L2c|LINE|L2	190025	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_51054	chr2	10394843	10395109	+	19.80440	NA	Intergenic	Intergenic	-48054	NM_002149	3241	Hs.580427	NM_002149	HPRD:02564	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_62265	chr20	55964328	55964557	+	19.78115	NA	intron (NR_039970, intron 1 of 2)	CpG	-2012	NM_017495	55544	Hs.236361	NM_017495	HPRD:15268	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
19-PTNLD28-TUMOR_peak_32306	chr14	105348805	105348950	+	19.77328	NA	intron (NM_001112726, intron 6 of 18)	intron (NM_001112726, intron 6 of 18)	17227	NM_015005	283638	Hs.533721	NM_015005	HPRD:12388	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_29668	chr14	27245194	27245452	+	19.77328	NA	intron (NR_110033, intron 3 of 3)	intron (NR_110033, intron 3 of 3)	-33231	NR_110557	102724890	Hs.569381	NR_110556		LOC102724890	-	uncharacterized LOC102724890	ncRNA
19-PTNLD28-TUMOR_peak_68784	chr3	64470209	64470353	+	19.77328	NA	Intergenic	Intergenic	-76741	NR_110151	101929335	Hs.476604	NR_110150		ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8281	chr1	173609688	173609931	+	19.77328	NA	intron (NM_198493, intron 3 of 5)	HERVI-int|LTR|ERV1	5148	NM_001195190	730159	Hs.647757	NM_001195190		LOC730159	-	uncharacterized LOC730159	protein-coding
19-PTNLD28-TUMOR_peak_77991	chr4	169718374	169718633	+	19.77328	NA	intron (NM_016081, intron 10 of 20)	intron (NM_016081, intron 10 of 20)	-34653	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_80187	chr5	60983257	60983549	+	19.76402	NA	intron (NM_173667, intron 3 of 3)	intron (NM_173667, intron 3 of 3)	10856	NR_109910	101928651	Hs.662309	NR_109910	ENSG00000248529	LOC101928651	-	uncharacterized LOC101928651	ncRNA
19-PTNLD28-TUMOR_peak_108204	chrX	47886137	47886330	+	19.76402	NA	Intergenic	Intergenic	19063	NM_001079900	729201	Hs.319319	NM_001079900	ENSG00000171478	SPACA5B	-	sperm acrosome associated 5B	protein-coding
19-PTNLD28-TUMOR_peak_16852	chr11	6200737	6200975	+	19.76402	NA	Intergenic	L1P1|LINE|L1	-9300	NM_001004052	255725	Hs.690457	NM_001004052	HPRD:15006	OR52B2	OR11-70	olfactory receptor, family 52, subfamily B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_105070	chr9	104834752	104834915	+	19.76402	NA	Intergenic	Intergenic	-333971	NM_133445	116443	Hs.654783	NM_133445	HPRD:09443	GRIN3A	GluN3A|NMDAR-L|NR3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	protein-coding
19-PTNLD28-TUMOR_peak_30856	chr14	66892249	66892488	+	19.76402	NA	Intergenic	Intergenic	-60721	NR_110308	440184	Hs.412138	NM_001004331	HPRD:14708	LINC00238	C14orf53|NCRNA00238	long intergenic non-protein coding RNA 238	ncRNA
19-PTNLD28-TUMOR_peak_33153	chr15	40417239	40417432	+	19.76402	NA	Intergenic	Intergenic	-16250	NM_001003943	90427	Hs.591104	NM_033503	HPRD:05881	BMF	-	Bcl2 modifying factor	protein-coding
19-PTNLD28-TUMOR_peak_53815	chr2	85812212	85812656	+	19.76303	NA	intron (NM_006634, intron 1 of 2)	intron (NM_006634, intron 1 of 2)	903	NM_006634	10791	Hs.534373	NM_006634	HPRD:09513	VAMP5	-	vesicle-associated membrane protein 5	protein-coding
19-PTNLD28-TUMOR_peak_38956	chr16	81272091	81272372	+	19.76254	NA	promoter-TSS (NM_017429)	promoter-TSS (NM_017429)	-65	NM_017429	53630	Hs.212172	NM_017429	HPRD:12042	BCO1	BCDO|BCDO1|BCMO|BCMO1|BCO	beta-carotene oxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_82951	chr5	145317154	145317311	+	19.76006	NA	intron (NM_152550, intron 1 of 9)	intron (NM_152550, intron 1 of 9)	1106	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_57814	chr2	202119095	202119329	+	19.75865	NA	intron (NM_033355, intron 2 of 9)	intron (NM_033355, intron 2 of 9)	-3542	NM_001080125	841	Hs.599762	NM_001228	HPRD:03459	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_83171	chr5	149509372	149509771	+	19.75732	NA	intron (NM_002609, intron 9 of 22)	intron (NM_002609, intron 9 of 22)	-16636	NM_005211	1436	Hs.586219	NM_005211	HPRD:01269	CSF1R	C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_2471	chr1	37241054	37241489	+	19.75732	NA	Intergenic	Intergenic	258573	NM_000831	2899	Hs.128848	NM_000831	HPRD:00691	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate receptor, ionotropic, kainate 3	protein-coding
19-PTNLD28-TUMOR_peak_18644	chr11	57224912	57225081	+	19.75643	NA	Intergenic	Intergenic	-3014	NM_178570	349667	Hs.502618	NM_178570		RTN4RL2	NGRH1|NgR2	reticulon 4 receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_90301	chr6	159128258	159128449	+	19.75643	NA	intron (NM_001242395, intron 7 of 15)	intron (NM_001242395, intron 7 of 15)	57307	NM_001242394	94120	Hs.436977	NM_001009991	HPRD:15462	SYTL3	SLP3	synaptotagmin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_54335	chr2	97524522	97524713	+	19.75499	NA	promoter-TSS (NM_016466)	promoter-TSS (NM_016466)	-861	NM_016466	51239	Hs.709507	NM_016466	HPRD:14614	ANKRD39	-	ankyrin repeat domain 39	protein-coding
19-PTNLD28-TUMOR_peak_62604	chr20	62284586	62284809	+	19.75264	NA	promoter-TSS (NM_001276310)	promoter-TSS (NM_001276310)	266	NM_015894	50861	Hs.639609	NM_015894	HPRD:16324	STMN3	SCLIP	stathmin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_55665	chr2	130664530	130664743	+	19.75093	NA	Intergenic	Intergenic	-16114	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_94892	chr7	115850384	115850641	+	19.75093	NA	promoter-TSS (NM_015641)	promoter-TSS (NM_015641)	-35	NM_015641	26136	Hs.592286	NM_015641	HPRD:05833	TES	TESS|TESS-2	testis derived transcript (3 LIM domains)	protein-coding
19-PTNLD28-TUMOR_peak_93808	chr7	87255827	87256040	+	19.75058	NA	intron (NM_000927, intron 1 of 28)	(TA)n|Simple_repeat|Simple_repeat	-1796	NM_001134405	154661	Hs.411488	NM_138290	HPRD:15274	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_82304	chr5	134692316	134692474	+	19.75031	NA	intron (NM_001040158, intron 5 of 8)	intron (NM_001040158, intron 5 of 8)	42533	NM_138610	9555	Hs.420272	NM_004893	HPRD:13624	H2AFY	H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family, member Y	protein-coding
19-PTNLD28-TUMOR_peak_2540	chr1	38259548	38259965	+	19.75031	NA	promoter-TSS (NM_001113482)	promoter-TSS (NM_001113482)	-18	NM_001031740	149175	Hs.534562	NM_152496	HPRD:08713	MANEAL	-	mannosidase, endo-alpha-like	protein-coding
19-PTNLD28-TUMOR_peak_56953	chr2	172544155	172544679	+	19.75031	NA	intron (NM_001271787, intron 1 of 15)	CpG	235	NM_001271787	1781	Hs.546250	NM_001378	HPRD:04512	DYNC1I2	DNCI2|IC2	dynein, cytoplasmic 1, intermediate chain 2	protein-coding
19-PTNLD28-TUMOR_peak_19268	chr11	65236421	65236557	+	19.73504	NA	Intergenic	Intergenic	24560	NR_030343	693197		NR_030343	miRBase:MI0003625	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
19-PTNLD28-TUMOR_peak_18025	chr11	34701845	34702028	+	19.72233	NA	Intergenic	Intergenic	47925	NM_001206616	26298	Hs.653859	NM_012153		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
19-PTNLD28-TUMOR_peak_22999	chr12	10117361	10117693	+	19.72206	NA	intron (NM_001207010, intron 1 of 6)	HERVH-int|LTR|ERV1	-6481	NM_001300730	160364	Hs.190519	NM_138337	HPRD:14719	CLEC12A	CLL-1|CLL1|DCAL-2|MICL	C-type lectin domain family 12, member A	protein-coding
19-PTNLD28-TUMOR_peak_8131	chr1	170507427	170507613	+	19.72206	NA	intron (NM_152281, intron 1 of 4)	intron (NM_152281, intron 1 of 4)	6257	NM_152281	92344	Hs.183702	NM_152281	HPRD:12144	GORAB	GO|NTKLBP1|SCYL1BP1	golgin, RAB6-interacting	protein-coding
19-PTNLD28-TUMOR_peak_64075	chr21	47118502	47118852	+	19.72206	NA	Intergenic	Intergenic	137656	NR_038876	100129027	Hs.689591	NR_038876	ENSG00000205424	LOC100129027	-	uncharacterized LOC100129027	ncRNA
19-PTNLD28-TUMOR_peak_104130	chr9	84783517	84783798	+	19.72206	NA	Intergenic	Intergenic	179970	NM_001001670	389763	Hs.209545	NM_001001670	HPRD:13531	SPATA31D1	FAM75D1	SPATA31 subfamily D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_84939	chr6	3884278	3884558	+	19.72206	NA	Intergenic	Intergenic	34786	NM_012135	26240	Hs.140944	NM_012135	HPRD:16883	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
19-PTNLD28-TUMOR_peak_89944	chr6	150167511	150167752	+	19.72206	NA	intron (NM_032832, intron 2 of 6)	intron (NM_032832, intron 2 of 6)	-17003	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63833	chr21	44595706	44596080	+	19.71908	NA	Intergenic	Intergenic	6775	NM_000394	1409	Hs.184085	NM_000394	HPRD:00427	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
19-PTNLD28-TUMOR_peak_54304	chr2	97175197	97175363	+	19.71276	NA	Intergenic	Intergenic	-1434	NR_104346	93082	Hs.149219	NM_001080535	HPRD:14296	NEURL3	LINCR	neuralized E3 ubiquitin protein ligase 3	protein-coding
19-PTNLD28-TUMOR_peak_19775	chr11	70964273	70964692	+	19.70701	NA	Intergenic	Intergenic	-28640	NM_012309	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_38764	chr16	75467836	75468083	+	19.70701	NA	promoter-TSS (NM_006324)	promoter-TSS (NM_006324)	-572	NM_006324	10428	Hs.461361	NM_006324	HPRD:16282	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22697	chr12	6153367	6153537	+	19.70701	NA	intron (NM_000552, intron 18 of 51)	intron (NM_000552, intron 18 of 51)	80384	NM_000552	7450	Hs.440848	NM_000552	HPRD:01906	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
19-PTNLD28-TUMOR_peak_59429	chr20	1307971	1308202	+	19.70192	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	-1573	NM_001199784	27111	Hs.657015	NM_015685	HPRD:18032	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
19-PTNLD28-TUMOR_peak_62100	chr20	52678263	52678458	+	19.69950	NA	intron (NM_003657, intron 1 of 11)	intron (NM_003657, intron 1 of 11)	6664	NR_039913	100616225		NR_039913	miRBase:MI0017397	MIR4756	-	microRNA 4756	ncRNA
19-PTNLD28-TUMOR_peak_36019	chr16	4545215	4545386	+	19.69950	NA	promoter-TSS (NM_001127205)	promoter-TSS (NM_001127205)	-520	NM_001286270	3163	Hs.284279	NM_002134	HPRD:00783	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
19-PTNLD28-TUMOR_peak_46974	chr19	7571400	7571558	+	19.69950	NA	intron (NM_198534, intron 7 of 8)	intron (NM_198534, intron 7 of 8)	9034	NM_198534	374877	Hs.631862	NM_198534	HPRD:13420	C19orf45	-	chromosome 19 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_89064	chr6	110115020	110115254	+	19.69950	NA	intron (NM_014845, intron 21 of 22)	intron (NM_014845, intron 21 of 22)	102713	NM_014845	9896	Hs.529959	NM_014845	HPRD:11073	FIG4	ALS11|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_33754	chr15	58867342	58867555	+	19.69950	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-76514	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_90350	chr6	160114744	160114920	+	19.69950	NA	promoter-TSS (NM_000636)	promoter-TSS (NM_000636)	-479	NM_000636	6648	Hs.487046	NM_000636	HPRD:00938	SOD2	IPOB|MNSOD|MVCD6	superoxide dismutase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_70675	chr3	128806876	128807061	+	19.69950	NA	3' UTR (NM_001204888, exon 3 of 3)	3' UTR (NM_001204888, exon 3 of 3)	27358	NM_000174	2815	Hs.1144	NM_000174	HPRD:01432	GP9	CD42a|GPIX	glycoprotein IX (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_32132	chr14	102746241	102746614	+	19.69950	NA	intron (NM_014226, intron 2 of 11)	intron (NM_014226, intron 2 of 11)	25110	NM_001272011	5891	Hs.104119	NM_014226	HPRD:09310	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_11950	chr10	8431678	8431833	+	19.69950	NA	Intergenic	Intergenic	-121487	NR_108058	100507143	Hs.258979	NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
19-PTNLD28-TUMOR_peak_59622	chr20	4214838	4215152	+	19.69292	NA	intron (NM_000678, intron 1 of 1)	intron (NM_000678, intron 1 of 1)	14664	NM_000678	146	Hs.557	NM_000678	HPRD:00079	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
19-PTNLD28-TUMOR_peak_54187	chr2	95688984	95689147	+	19.69292	NA	Intergenic	Intergenic	-2335	NM_022439	4118	Hs.80395	NM_002371	HPRD:01789	MAL	-	mal, T-cell differentiation protein	protein-coding
19-PTNLD28-TUMOR_peak_85047	chr6	5729385	5729641	+	19.69004	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	-34008	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
19-PTNLD28-TUMOR_peak_90886	chr7	2214946	2215442	+	19.69004	NA	intron (NM_001013836, intron 10 of 18)	HAL1|LINE|L1	57389	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_3079	chr1	44620388	44620622	+	19.69004	NA	Intergenic	Intergenic	35983	NM_173484	128209	Hs.567674	NM_173484	HPRD:08272	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
19-PTNLD28-TUMOR_peak_89085	chr6	110858426	110858777	+	19.69004	NA	Intergenic	Intergenic	-60757	NM_033125	85413	Hs.520319	NM_033125	HPRD:12202	SLC22A16	CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 (organic cation/carnitine transporter), member 16	protein-coding
19-PTNLD28-TUMOR_peak_36300	chr16	11482038	11482192	+	19.68907	NA	Intergenic	Intergenic	42804	NM_152308	116028	Hs.347524	NM_152308	HPRD:14497	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19-PTNLD28-TUMOR_peak_84275	chr5	176493329	176493574	+	19.68907	NA	3' UTR (NM_012279, exon 7 of 7)	3' UTR (NM_012279, exon 7 of 7)	-20422	NM_002011	2264	Hs.165950	NM_002011	HPRD:00625	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_47844	chr19	16796114	16796370	+	19.68907	NA	intron (NM_024074, intron 4 of 5)	MER77|LTR|ERVL	24304	NM_024074	79041	Hs.436068	NM_024074		TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
19-PTNLD28-TUMOR_peak_46596	chr19	1566688	1567056	+	19.68907	NA	intron (NM_001174118, intron 1 of 2)	CpG	1185	NM_203304	399664	Hs.436495	NM_203304	HPRD:15254	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
19-PTNLD28-TUMOR_peak_51387	chr2	19085147	19085410	+	19.68907	NA	Intergenic	Intergenic	-314432	NM_001199088	93034	Hs.744358	NM_033253	HPRD:11405	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
19-PTNLD28-TUMOR_peak_73498	chr3	195442981	195443197	+	19.67809	NA	Intergenic	LTR10A|LTR|ERV1	-4664	NM_152673	200958	Hs.308992	NM_020790	HPRD:17615	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_7084	chr1	154531816	154532275	+	19.67809	NA	promoter-TSS (NM_017582)	promoter-TSS (NM_017582)	-925	NM_017582	55585	Hs.607928	NM_017582	HPRD:15601	UBE2Q1	GTAP|NICE-5|UBE2Q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding
19-PTNLD28-TUMOR_peak_31974	chr14	99360112	99360336	+	19.67363	NA	Intergenic	Intergenic	182274	NM_182560	283598	Hs.448754	NM_182560	HPRD:08075	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_28501	chr13	76279586	76279849	+	19.67363	NA	intron (NM_005358, intron 2 of 29)	intron (NM_005358, intron 2 of 29)	-55080	NM_015842	4008	Hs.207631	NM_005358	HPRD:05078	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
19-PTNLD28-TUMOR_peak_45318	chr18	36692287	36692690	+	19.67363	NA	Intergenic	Intergenic	-564197	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_88558	chr6	84406533	84406657	+	19.67363	NA	intron (NM_001256717, intron 2 of 29)	L2a|LINE|L2	11925	NM_001256718	9892	Hs.368046	NM_014841	HPRD:06391	SNAP91	AP180|CALM	synaptosomal-associated protein, 91kDa	protein-coding
19-PTNLD28-TUMOR_peak_31345	chr14	75954120	75954377	+	19.67363	NA	Intergenic	Intergenic	-34536	NM_006399	10538	Hs.509964	NM_006399	HPRD:09820	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper transcription factor, ATF-like	protein-coding
19-PTNLD28-TUMOR_peak_107708	chrX	18891308	18891530	+	19.67363	NA	Intergenic	Intergenic	-16995	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105957	chr9	125215388	125215696	+	19.67363	NA	Intergenic	MSTB|LTR|ERVL-MaLR	24663	NM_001004451	347168	Hs.632692	NM_001004451	HPRD:14916	OR1J1	OR9-18|hg32	olfactory receptor, family 1, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_75565	chr4	68158506	68158613	+	19.67363	NA	Intergenic	Intergenic	129159	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_55142	chr2	114616453	114616627	+	19.67363	NA	intron (NR_110174, intron 2 of 4)	intron (NR_110174, intron 2 of 4)	-30971	NR_102318	10096	Hs.433512	NM_005721	HPRD:05024	ACTR3	ARP3	ARP3 actin-related protein 3 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_35206	chr15	90895920	90896101	+	19.66832	NA	intron (NM_001004309, intron 1 of 3)	intron (NM_001004309, intron 1 of 3)	533	NM_001004309	342132	Hs.55307	NM_001004309		ZNF774	-	zinc finger protein 774	protein-coding
19-PTNLD28-TUMOR_peak_78542	chr4_gl000194_random	114979	115312	+	19.66832	NA	promoter-TSS (NR_046439)	promoter-TSS (NR_046439)	-72	NR_046439	727764	Hs.626311	NM_001190825		MAFIP	MIP|TEKT4P4|pp5644	MAFF interacting protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_93397	chr7	75039857	75040103	+	19.66588	NA	non-coding (NR_033322, exon 2 of 11)	non-coding (NR_033322, exon 2 of 11)	375	NR_033322	155400	Hs.436034	NM_001039575		NSUN5P1	NSUN5B|WBSCR20B	NOP2/Sun domain family, member 5 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_6579	chr1	149214838	149214981	+	19.65803	NA	Intergenic	LTR4|LTR|ERV1	-72221	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
19-PTNLD28-TUMOR_peak_18942	chr11	61815671	61815875	+	19.65803	NA	Intergenic	Intergenic	-75672	NM_001040694	3619	Hs.142179	NM_020238	HPRD:05103	INCENP	-	inner centromere protein antigens 135/155kDa	protein-coding
19-PTNLD28-TUMOR_peak_24379	chr12	52976734	52977031	+	19.64683	NA	Intergenic	Intergenic	-9273	NM_175053	121391	Hs.660125	NM_175053	HPRD:10504	KRT74	ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
19-PTNLD28-TUMOR_peak_60635	chr20	32886195	32886316	+	19.64366	NA	intron (NM_001161766, intron 1 of 9)	LTR13|LTR|ERVK	4960	NM_000687	191	Hs.388004	NM_000687	HPRD:01621	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
19-PTNLD28-TUMOR_peak_65821	chr22	43781802	43781964	+	19.64093	NA	Intergenic	Intergenic	-26137	NM_001044370	758	Hs.159538	NM_001044370	HPRD:03663	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63084	chr21	30795403	30795655	+	19.64093	NA	Intergenic	Intergenic	50708	NR_046564	100874322	Hs.326404	NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23999	chr12	47665108	47665269	+	19.64093	NA	Intergenic	Intergenic	-54962	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88732	chr6	90307832	90308026	+	19.64093	NA	intron (NM_001242811, intron 3 of 15)	intron (NM_001242811, intron 3 of 15)	31372	NM_001242814	22881	Hs.702213	NM_014942	HPRD:09798	ANKRD6	-	ankyrin repeat domain 6	protein-coding
19-PTNLD28-TUMOR_peak_44240	chr18	1047506	1047714	+	19.64093	NA	Intergenic	Intergenic	142413	NM_001117	116	Hs.531719	NM_001117	HPRD:02369	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
19-PTNLD28-TUMOR_peak_52418	chr2	43485011	43485205	+	19.64093	NA	intron (NM_022065, intron 36 of 37)	intron (NM_022065, intron 36 of 37)	30758	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_74126	chr4	5792055	5792240	+	19.64093	NA	intron (NM_153717, intron 12 of 20)	intron (NM_153717, intron 12 of 20)	79223	NM_153717	2121	Hs.646899	NM_014556	HPRD:05319	EVC	DWF-1|EVC1|EVCL	Ellis van Creveld syndrome	protein-coding
19-PTNLD28-TUMOR_peak_101452	chr8	142167314	142167525	+	19.63950	NA	intron (NM_014957, intron 8 of 22)	intron (NM_014957, intron 8 of 22)	28699	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_70177	chr3	122683801	122684207	+	19.63641	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	10977	NM_001256347	54437	Hs.210870	NM_018987	HPRD:15322	SEMA5B	SEMAG|SemG	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding
19-PTNLD28-TUMOR_peak_513	chr1	8319158	8319988	+	19.63346	NA	Intergenic	Intergenic	-58572	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_88318	chr6	74098554	74099019	+	19.63346	NA	Intergenic	Intergenic	-5499	NM_018665	55510	Hs.125507	NM_018665	HPRD:10448	DDX43	CT13|HAGE	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding
19-PTNLD28-TUMOR_peak_52193	chr2	38303362	38303711	+	19.63346	NA	promoter-TSS (NM_000104)	promoter-TSS (NM_000104)	-213	NM_000104	1545	Hs.154654	NM_000104	HPRD:03464	CYP1B1	CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450, family 1, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_28510	chr13	76362764	76363127	+	19.62766	NA	intron (NM_015842, intron 1 of 26)	intron (NM_015842, intron 1 of 26)	28148	NM_015842	4008	Hs.207631	NM_005358	HPRD:05078	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
19-PTNLD28-TUMOR_peak_6650	chr1	149974288	149974436	+	19.62766	NA	intron (NM_020205, intron 1 of 11)	intron (NM_020205, intron 1 of 11)	8324	NM_020205	56957	Hs.98322	NM_020205		OTUD7B	CEZANNE|ZA20D1	OTU deubiquitinase 7B	protein-coding
19-PTNLD28-TUMOR_peak_2008	chr1	31449069	31449321	+	19.62766	NA	intron (NM_001020658, intron 9 of 21)	intron (NM_001020658, intron 9 of 21)	-8111	NR_003066	692200		NR_003066		SNORD85	HBII-251	small nucleolar RNA, C/D box 85	snoRNA
19-PTNLD28-TUMOR_peak_94330	chr7	100224170	100224515	+	19.62766	NA	intron (NM_003227, intron 17 of 17)	CpG	6931	NM_001206855	7036	Hs.544932	NM_003227	HPRD:05282	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_66785	chr3	13974247	13974766	+	19.62638	NA	promoter-TSS (NR_036481)	promoter-TSS (NR_036481)	-47	NR_036481	100132526	Hs.637770	NR_036481	ENSG00000250439	FGD5P1	-	FYVE, RhoGEF and PH domain containing 5 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_103700	chr9	72027698	72027835	+	19.62638	NA	Intergenic	Intergenic	83525	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_48960	chr19	39452884	39453193	+	19.62638	NA	intron (NR_104026, intron 1 of 5)	LTR41|LTR|ERVL	-9711	NM_148169	115290	Hs.531770	NM_024907	HPRD:16436	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
19-PTNLD28-TUMOR_peak_41350	chr17	38267978	38268207	+	19.62500	NA	Intergenic	Intergenic	-10698	NM_001012241	339287	Hs.532786	NM_001012241	ENSG00000188895	MSL1	MSL-1|hMSL1	male-specific lethal 1 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_47068	chr19	8516913	8517048	+	19.62347	NA	intron (NM_001297418, intron 1 of 13)	intron (NM_001297418, intron 1 of 13)	7177	NM_031203	4670	Hs.465808	NM_005968	HPRD:01188	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
19-PTNLD28-TUMOR_peak_47522	chr19	13358730	13358928	+	19.62347	NA	intron (NM_001174080, intron 30 of 46)	LTR16C|LTR|ERVL	97547	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_45295	chr18	35157022	35157269	+	19.62347	NA	Intergenic	Intergenic	-11145	NM_020180	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_70543	chr3	127181227	127181402	+	19.62347	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-71801	NR_110147	101927123	Hs.526761	NR_110147	ENSG00000244215	LOC101927123	-	uncharacterized LOC101927123	ncRNA
19-PTNLD28-TUMOR_peak_75872	chr4	79455463	79455979	+	19.62347	NA	exon (NM_025074, exon 71 of 74)	exon (NM_025074, exon 71 of 74)	-17021	NM_005139	306	Hs.480042	NM_005139	HPRD:00111	ANXA3	ANX3	annexin A3	protein-coding
19-PTNLD28-TUMOR_peak_97672	chr8	23278480	23278681	+	19.62282	NA	Intergenic	HERVK3-int|LTR|ERVK	-16858	NM_002318	4017	Hs.626637	NM_002318	HPRD:09446	LOXL2	LOR2|WS9-14	lysyl oxidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_72795	chr3	184284925	184285114	+	19.61319	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	5432	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_22830	chr12	7043423	7043580	+	19.60949	NA	intron (NM_001007026, intron 3 of 9)	intron (NM_001007026, intron 3 of 9)	6021	NM_001940	1822	Hs.143766	NM_001940	HPRD:06311	ATN1	B37|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
19-PTNLD28-TUMOR_peak_31788	chr14	93581429	93582288	+	19.60945	NA	intron (NM_014216, intron 1 of 10)	CpG-7316	405	NM_001142593	3705	Hs.308122	NM_014216	HPRD:03501	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
19-PTNLD28-TUMOR_peak_19314	chr11	65487414	65488358	+	19.60945	NA	TTS (NM_001206833)	TTS (NM_001206833)	523	NM_032193	84153	Hs.718438	NM_032193	HPRD:16531	RNASEH2C	AGS3|AYP1	ribonuclease H2, subunit C	protein-coding
19-PTNLD28-TUMOR_peak_19192	chr11	64635497	64635830	+	19.60895	NA	intron (NM_001282445, intron 3 of 5)	intron (NM_001282445, intron 3 of 5)	10577	NM_006795	10938	Hs.523774	NM_006795	HPRD:09325	EHD1	H-PAST|HPAST1|PAST|PAST1	EH-domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_486	chr1	8078909	8079081	+	19.60119	NA	intron (NM_018948, intron 1 of 3)	L2|LINE|L2	7398	NM_018948	54206	Hs.605445	NM_018948	HPRD:09218	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_93350	chr7	74378653	74378843	+	19.60119	NA	Intergenic	L2c|LINE|L2	71861	NR_027776	5383	Hs.292996	NM_174930	HPRD:17867	PMS2P5	PMS2L5|PMS7	postmeiotic segregation increased 2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_54213	chr2	95943974	95944130	+	19.60119	NA	intron (NM_144707, intron 8 of 23)	intron (NM_144707, intron 8 of 23)	3851	NM_001165977	150696	Hs.437376	NM_144707	HPRD:17912	PROM2	PROML2	prominin 2	protein-coding
19-PTNLD28-TUMOR_peak_94749	chr7	106480838	106481029	+	19.59476	NA	Intergenic	Intergenic	-24790	NM_001282426	5294	Hs.32942	NM_002649	HPRD:03135	PIK3CG	PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma	protein-coding
19-PTNLD28-TUMOR_peak_15802	chr10	116616173	116616665	+	19.59476	NA	intron (NM_020940, intron 14 of 16)	intron (NM_020940, intron 14 of 16)	34916	NM_020940	57700	Hs.192619	NM_020940	HPRD:17219	FAM160B1	KIAA1600|bA106M7.3	family with sequence similarity 160, member B1	protein-coding
19-PTNLD28-TUMOR_peak_45629	chr18	46147754	46147923	+	19.59365	NA	intron (NM_014772, intron 2 of 11)	intron (NM_014772, intron 2 of 11)	-49133	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
19-PTNLD28-TUMOR_peak_65876	chr22	44979109	44979459	+	19.59061	NA	Intergenic	Intergenic	14064	NR_028409	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_88122	chr6	56614442	56614630	+	19.58357	NA	intron (NM_001144769, intron 4 of 96)	intron (NM_001144769, intron 4 of 96)	602	NR_046940	100873774		NR_046940	ENSG00000207203	RNU6-71P	RNU6-71	RNA, U6 small nuclear 71, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_22679	chr12	5854508	5854712	+	19.58357	NA	intron (NM_001278596, intron 11 of 25)	intron (NM_001278596, intron 11 of 25)	199815	NM_001278596	57101	Hs.148970	NM_020373	HPRD:11634	ANO2	C12orf3|TMEM16B	anoctamin 2, calcium activated chloride channel	protein-coding
19-PTNLD28-TUMOR_peak_27907	chr13	40373019	40373345	+	19.58357	NA	Intergenic	L1PA4|LINE|L1	-134910	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_65103	chr22	31113628	31113868	+	19.58357	NA	intron (NM_030758, intron 1 of 13)	intron (NM_030758, intron 1 of 13)	-13796	NR_036171	100422912		NR_036171		MIR3200	-	microRNA 3200	ncRNA
19-PTNLD28-TUMOR_peak_102135	chr9	7216332	7216555	+	19.58357	NA	Intergenic	L1PA6|LINE|L1	458802	NM_015061	23081	Hs.709425	NM_015061	HPRD:12016	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
19-PTNLD28-TUMOR_peak_70135	chr3	121977712	121977876	+	19.58357	NA	intron (NM_000388, intron 3 of 6)	intron (NM_000388, intron 3 of 6)	-66217	NM_005213	1475	Hs.518198	NM_005213	HPRD:01697	CSTA	AREI|STF1|STFA	cystatin A (stefin A)	protein-coding
19-PTNLD28-TUMOR_peak_34464	chr15	74419988	74420172	+	19.58357	NA	non-coding (NR_027073, exon 2 of 2)	non-coding (NR_027073, exon 2 of 2)	1539	NR_027073	283731	Hs.631696	NR_027073	ENSG00000248540	LOC283731	-	uncharacterized LOC283731	ncRNA
19-PTNLD28-TUMOR_peak_85233	chr6	9132018	9132183	+	19.58357	NA	Intergenic	Intergenic	479658	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_38189	chr16	64623822	64624017	+	19.58357	NA	Intergenic	MARNA|DNA|TcMar-Mariner	532000	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
19-PTNLD28-TUMOR_peak_40088	chr17	8204048	8204198	+	19.58357	NA	Intergenic	Intergenic	-5953	NM_201520	399512	Hs.118918	NM_201520	HPRD:13444	SLC25A35	-	solute carrier family 25, member 35	protein-coding
19-PTNLD28-TUMOR_peak_63654	chr21	42733761	42733995	+	19.57997	NA	promoter-TSS (NM_002463)	promoter-TSS (NM_002463)	-72	NM_002463	4600	Hs.926	NM_002463	HPRD:01001	MX2	MXB	MX dynamin-like GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_77797	chr4	157897360	157897548	+	19.57997	NA	Intergenic	Intergenic	-4908	NR_036641	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_29335	chr14	21092900	21093111	+	19.57997	NA	Intergenic	CpG	16845	NM_001001968	341799	Hs.513132	NM_001001968	HPRD:17779	OR6S1	OR14-37|OR6S1Q	olfactory receptor, family 6, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_995	chr1	15742542	15742937	+	19.57696	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	6348	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_6246	chr1	145032353	145032630	+	19.57696	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	7504	NM_001198832	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_1983	chr1	31173885	31174081	+	19.57696	NA	Intergenic	L2b|LINE|L2	-17636	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37494	chr16	33458255	33458400	+	19.57696	NA	Intergenic	Intergenic	104916	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76P	RNU6-76	RNA, U6 small nuclear 76, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_32073	chr14	100841708	100842135	+	19.57475	NA	promoter-TSS (NM_213646)	promoter-TSS (NM_213646)	6	NM_213646	7453	Hs.497599	NM_004184	HPRD:01845	WARS	GAMMA-2|IFI53|IFP53	tryptophanyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_50185	chr19	53606001	53606374	+	19.56985	NA	intron (NM_001102603, intron 1 of 6)	CpG	500	NM_198893	90338	Hs.655967	NM_033288	HPRD:11856	ZNF160	F11|HKr18|HZF5|KR18	zinc finger protein 160	protein-coding
19-PTNLD28-TUMOR_peak_45068	chr18	28500435	28500673	+	19.56061	NA	Intergenic	Intergenic	122227	NM_001941	1825	Hs.41690	NM_001941	HPRD:02604	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
19-PTNLD28-TUMOR_peak_8842	chr1	184985986	184986189	+	19.56061	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-28464	NM_007212	6045	Hs.591490	NM_007212	HPRD:07028	RNF2	BAP-1|BAP1|DING|HIPI3|RING1B|RING2	ring finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_40279	chr17	15255365	15255574	+	19.56061	NA	Intergenic	Intergenic	-10511	NM_031898	64518	Hs.414648	NM_031898	HPRD:18173	TEKT3	-	tektin 3	protein-coding
19-PTNLD28-TUMOR_peak_78205	chr4	183825733	183826045	+	19.56061	NA	intron (NM_001012732, intron 3 of 5)	L2c|LINE|L2	12741	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_65937	chr22	46041546	46041721	+	19.56061	NA	Intergenic	CpG	-26045	NM_001167621	25814	Hs.475125	NM_013236	HPRD:04624	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding
19-PTNLD28-TUMOR_peak_28161	chr13	47207614	47207917	+	19.56061	NA	intron (NM_001164211, intron 1 of 19)	L2c|LINE|L2	80469	NM_015116	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_13572	chr10	50873382	50873688	+	19.56061	NA	TTS (NM_001142933)	TTS (NM_001142933)	-14149	NM_182554	282966	Hs.131287	NM_182554		C10orf53	-	chromosome 10 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_102753	chr9	34073233	34073368	+	19.55704	NA	Intergenic	Intergenic	-24353	NM_018449	55833	Hs.493739	NM_018449	HPRD:06748	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_45038	chr18	25423727	25424232	+	19.55704	NA	Intergenic	Intergenic	333466	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_35363	chr15	96808314	96808487	+	19.55704	NA	intron (NR_125738, intron 2 of 4)	intron (NR_125738, intron 2 of 4)	-60757	NM_001145155	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_30292	chr14	52535642	52536007	+	19.55704	NA	5' UTR (NM_007361, exon 1 of 22)	5' UTR (NM_007361, exon 1 of 22)	122	NM_007361	22795	Hs.369840	NM_007361	HPRD:05654	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
19-PTNLD28-TUMOR_peak_101616	chr8	144397087	144397212	+	19.55368	NA	intron (NM_001258447, intron 12 of 13)	LTR13|LTR|ERVK	19912	NM_052963	116447	Hs.528574	NM_052963	HPRD:16214	TOP1MT	-	topoisomerase (DNA) I, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_101266	chr8	137071951	137072340	+	19.55368	NA	Intergenic	L1PA16|LINE|L1	602429	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_20483	chr11	87063918	87064106	+	19.55368	NA	Intergenic	Intergenic	315126	NR_033149	65084	Hs.188591	NM_022918		TMEM135	PMP52	transmembrane protein 135	protein-coding
19-PTNLD28-TUMOR_peak_14570	chr10	81158960	81159598	+	19.55368	NA	intron (NM_153367, intron 2 of 3)	intron (NM_153367, intron 2 of 3)	46104	NM_153367	219654	Hs.523080	NM_153367	HPRD:08299	ZCCHC24	C10orf56|Z3CXXC8	zinc finger, CCHC domain containing 24	protein-coding
19-PTNLD28-TUMOR_peak_14729	chr10	88295209	88295623	+	19.55368	NA	Intergenic	CpG	-13875	NM_015045	23063	Hs.203099	NM_015045	HPRD:11072	WAPAL	FOE|KIAA0261|WAPL	wings apart-like homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_42582	chr17	56416403	56416567	+	19.54289	NA	intron (NR_038416, intron 1 of 2)	intron (NR_038416, intron 1 of 2)	1922	NR_038417	100506779	Hs.718477	NR_038410	ENSG00000265148	BZRAP1-AS1	-	BZRAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16427	chr10	135523272	135523432	+	19.53206	NA	Intergenic	TAR1|Satellite|telo	-83053	NM_001080998	441581	Hs.690471	NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_28610	chr13	80915399	80915723	+	19.53182	NA	promoter-TSS (NM_005842)	promoter-TSS (NM_005842)	-475	NM_005842	10253	Hs.18676	NM_005842	HPRD:03916	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34219	chr15	69707087	69707446	+	19.53182	NA	intron (NM_138555, intron 1 of 22)	CpG	681	NM_001281301	9493	Hs.270845	NM_004856	HPRD:05455	KIF23	CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
19-PTNLD28-TUMOR_peak_92040	chr7	36698245	36698483	+	19.52411	NA	intron (NM_001177506, intron 4 of 21)	MER81|DNA|hAT-Blackjack	-58638	NR_046764	100874264	Hs.690994	NR_046764		AOAH-IT1	-	AOAH intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_74472	chr4	10001811	10002298	+	19.52411	NA	intron (NM_001001290, intron 3 of 12)	MLT1L|LTR|ERVL-MaLR	21060	NM_020041	56606	Hs.656895	NM_020041	HPRD:05848	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_72524	chr3	177545365	177545541	+	19.51228	NA	intron (NR_110826, intron 1 of 2)	intron (NR_110826, intron 1 of 2)	10800	NR_110826	102724550	Hs.570526	NR_110826		LOC102724550	-	uncharacterized LOC102724550	ncRNA
19-PTNLD28-TUMOR_peak_95826	chr7	140103705	140104141	+	19.50872	NA	promoter-TSS (NM_001008749)	promoter-TSS (NM_001008749)	80	NM_001008749	401409	Hs.583545	NM_001008749	HPRD:17946	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_94570	chr7	102678354	102678860	+	19.50604	NA	intron (NM_001287150, intron 2 of 18)	L1P2|LINE|L1	36408	NM_145032	222235	Hs.660029	NM_145032	HPRD:12364	FBXL13	Fbl13	F-box and leucine-rich repeat protein 13	protein-coding
19-PTNLD28-TUMOR_peak_9636	chr1	205457315	205457592	+	19.50300	NA	Intergenic	Intergenic	-16231	NM_212503	5129	Hs.445402	NM_002596	HPRD:01354	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin-dependent kinase 18	protein-coding
19-PTNLD28-TUMOR_peak_71144	chr3	137832279	137832509	+	19.50300	NA	promoter-TSS (NM_001170538)	promoter-TSS (NM_001170538)	-72	NM_001170538	199221	Hs.351403	NM_173543	HPRD:08145	DZIP1L	DZIP2	DAZ interacting zinc finger protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_30252	chr14	51387336	51387579	+	19.49461	NA	intron (NM_002863, intron 6 of 19)	intron (NM_002863, intron 6 of 19)	23791	NM_001163940	5836	Hs.282417	NM_002863	HPRD:01987	PYGL	GSD6	phosphorylase, glycogen, liver	protein-coding
19-PTNLD28-TUMOR_peak_21037	chr11	108518841	108519288	+	19.49461	NA	Intergenic	L1M1|LINE|L1	-16688	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_90303	chr6	159141605	159141919	+	19.49461	NA	intron (NM_001242394, intron 10 of 17)	MIR|SINE|MIR	44023	NR_037482	100500851		NR_037482	miRBase:MI0016424	MIR3918	-	microRNA 3918	ncRNA
19-PTNLD28-TUMOR_peak_23287	chr12	18008944	18009084	+	19.49461	NA	Intergenic	L1PA2|LINE|L1	182781	NR_039770	100616279		NR_039770		MIR3974	-	microRNA 3974	ncRNA
19-PTNLD28-TUMOR_peak_31694	chr14	91802206	91802352	+	19.49461	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	81909	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
19-PTNLD28-TUMOR_peak_77135	chr4	138974803	138974998	+	19.49461	NA	intron (NR_037866, intron 7 of 10)	intron (NR_037866, intron 7 of 10)	-35268	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36881	chr16	24021926	24022149	+	19.49461	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	174737	NM_212535	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_94157	chr7	98303858	98304108	+	19.49461	NA	Intergenic	Intergenic	57386	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_56398	chr2	154265314	154265473	+	19.49461	NA	Intergenic	MLT2A2|LTR|ERVL	69929	NM_019845	56475	Hs.100890	NM_019845	HPRD:18002	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
19-PTNLD28-TUMOR_peak_15463	chr10	105805336	105805472	+	19.49461	NA	intron (NM_000494, intron 33 of 55)	intron (NM_000494, intron 33 of 55)	2540	NR_030760	100126326		NR_030760		MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
19-PTNLD28-TUMOR_peak_67914	chr3	46152590	46152913	+	19.49421	NA	Intergenic	LTR71A|LTR|ERV1	-83772	NM_005283	2829	Hs.248116	NM_005283	HPRD:02774	XCR1	CCXCR1|GPR5	chemokine (C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_81272	chr5	96397808	96398287	+	19.49092	NA	Intergenic	Intergenic	80473	NM_153234	167410	Hs.656702	NM_153234	HPRD:08069	LIX1	C5orf11	Lix1 homolog (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_60182	chr20	22990372	22990618	+	19.49092	NA	Intergenic	Intergenic	-25562	NM_001052	6754	Hs.673846	NM_001052	HPRD:01676	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_60223	chr20	23735834	23736070	+	19.49092	NA	Intergenic	Intergenic	-4378	NM_001898	1469	Hs.123114	NM_001898	HPRD:00460	CST1	-	cystatin SN	protein-coding
19-PTNLD28-TUMOR_peak_34895	chr15	83378182	83378388	+	19.49092	NA	TTS (NR_034139)	TTS (NR_034139)	375	NM_001278511	8120	Hs.199593	NM_004644	HPRD:03699	AP3B2	NAPTB	adaptor-related protein complex 3, beta 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_14833	chr10	91087596	91087910	+	19.49092	NA	5' UTR (NM_001549, exon 1 of 2)	5' UTR (NM_001549, exon 1 of 2)	177	NM_001549	3437	Hs.47338	NM_001549	HPRD:05228	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G	interferon-induced protein with tetratricopeptide repeats 3	protein-coding
19-PTNLD28-TUMOR_peak_46429	chr18	77617123	77617415	+	19.49092	NA	Intergenic	Intergenic	-6399	NM_012283	26251	Hs.247905	NM_012283	HPRD:12036	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel, subfamily G, member 2	protein-coding
19-PTNLD28-TUMOR_peak_52587	chr2	46795993	46796520	+	19.48132	NA	non-coding (NR_104182, exon 2 of 2)	non-coding (NR_104182, exon 2 of 2)	11121	NR_104182	100506142	Hs.658541	NR_104182		LOC100506142	-	uncharacterized LOC100506142	ncRNA
19-PTNLD28-TUMOR_peak_68128	chr3	49493964	49494151	+	19.48132	NA	Intergenic	L2c|LINE|L2	-12079	NM_001177643	1605	Hs.76111	NM_004393	HPRD:00546	DAG1	156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9	dystroglycan 1 (dystrophin-associated glycoprotein 1)	protein-coding
19-PTNLD28-TUMOR_peak_71333	chr3	141056151	141056398	+	19.48132	NA	intron (NM_001080412, intron 1 of 7)	intron (NM_001080412, intron 1 of 7)	13219	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
19-PTNLD28-TUMOR_peak_90214	chr6	157547963	157548230	+	19.48132	NA	Intergenic	Intergenic	197195	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_71739	chr3	150960024	150960152	+	19.48132	NA	intron (NM_014879, intron 1 of 2)	L1PA2|LINE|L1	6910	NM_001081455	9934	Hs.2465	NM_014879	HPRD:08820	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding
19-PTNLD28-TUMOR_peak_67483	chr3	35705072	35705312	+	19.48132	NA	intron (NM_016300, intron 1 of 19)	intron (NM_016300, intron 1 of 19)	-15921	NM_001267618	10777	Hs.475902	NM_016300	HPRD:09265	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	cAMP-regulated phosphoprotein, 21kDa	protein-coding
19-PTNLD28-TUMOR_peak_72612	chr3	180598932	180599151	+	19.48104	NA	Intergenic	LTR9|LTR|ERV1	-11075	NR_109986	101928882	Hs.734668	NR_109986		LOC101928882	-	uncharacterized LOC101928882	ncRNA
19-PTNLD28-TUMOR_peak_34101	chr15	67143579	67143760	+	19.48104	NA	Intergenic	Intergenic	142739	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_103364	chr9	46580598	46580805	+	19.48104	NA	Intergenic	LTR16B|LTR|ERVL	-106856	NR_003674	387628	Hs.439341	NM_174950	HPRD:13402	KGFLP1	-	fibroblast growth factor 7 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_41657	chr17	41801458	41801651	+	19.48104	NA	Intergenic	Intergenic	34602	NM_025237	50964	Hs.349204	NM_025237	HPRD:05762	SOST	CDD|SOST1|VBCH	sclerostin	protein-coding
19-PTNLD28-TUMOR_peak_71355	chr3	141245668	141245855	+	19.48104	NA	intron (NM_006506, intron 3 of 23)	intron (NM_006506, intron 3 of 23)	39835	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_21534	chr11	118809309	118809592	+	19.48104	NA	Intergenic	L2|LINE|L2	-17558	NM_006760	7379	Hs.379613	NM_006760	HPRD:10295	UPK2	UP2|UPII	uroplakin 2	protein-coding
19-PTNLD28-TUMOR_peak_12509	chr10	25754838	25755227	+	19.48104	NA	intron (NM_020752, intron 4 of 10)	LTR12F|LTR|ERV1	-185609	NR_108068	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_18107	chr11	36442465	36442680	+	19.48104	NA	intron (NM_001160168, intron 2 of 5)	intron (NM_001160168, intron 2 of 5)	20025	NM_001160169	79899	Hs.19987	NM_024841	HPRD:07854	PRR5L	PROTOR2	proline rich 5 like	protein-coding
19-PTNLD28-TUMOR_peak_35	chr1	559314	559577	+	19.47489	NA	Intergenic	Intergenic	8348	NR_106781	102465432		NR_106781		MIR6723	hsa-mir-6723	microRNA 6723	ncRNA
19-PTNLD28-TUMOR_peak_64431	chr22	20360747	20360893	+	19.46852	NA	Intergenic	Intergenic	-16849	NM_001242313	728229	Hs.376511	NM_001242313		TMEM191B	-	transmembrane protein 191B	protein-coding
19-PTNLD28-TUMOR_peak_35817	chr16	2552880	2553185	+	19.46745	NA	3' UTR (NM_001199107, exon 8 of 8)	3' UTR (NM_001199107, exon 8 of 8)	-10695	NM_001198569	527	Hs.389107	NM_001694	HPRD:00162	ATP6V0C	ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3	ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c	protein-coding
19-PTNLD28-TUMOR_peak_66378	chr3	8667775	8667987	+	19.46745	NA	intron (NM_001256748, intron 9 of 11)	intron (NM_001256748, intron 9 of 11)	18603	NR_046358	51066	Hs.736935	NM_015931	HPRD:11267	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_14434	chr10	77909063	77909219	+	19.46355	NA	intron (NM_032024, intron 4 of 5)	MIRc|SINE|MIR	366622	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_15301	chr10	103600969	103601149	+	19.44587	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	-1448	NM_173194	30819	Hs.97044	NM_014591	HPRD:06880	KCNIP2	KCHIP2	Kv channel interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_41408	chr17	39059528	39059695	+	19.44587	NA	Intergenic	Intergenic	-18116	NM_019010	54474	Hs.84905	NM_019010	HPRD:12193	KRT20	CD20|CK-20|CK20|K20|KRT21	keratin 20	protein-coding
19-PTNLD28-TUMOR_peak_34182	chr15	68870036	68870578	+	19.44587	NA	Intergenic	Intergenic	-1001	NM_006091	10391	Hs.551213	NM_006091	HPRD:05416	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
19-PTNLD28-TUMOR_peak_3565	chr1	53806021	53806295	+	19.44587	NA	Intergenic	Intergenic	-12337	NM_001018054	7804	Hs.280387	NM_004631		LRP8	APOER2|HSZ75190|LRP-8|MCI1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding
19-PTNLD28-TUMOR_peak_61473	chr20	45618936	45619416	+	19.44154	NA	intron (NM_005244, intron 2 of 15)	intron (NM_005244, intron 2 of 15)	95913	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_93207	chr7	73226170	73226310	+	19.44120	NA	Intergenic	Intergenic	-18953	NM_001305	1364	Hs.647036	NM_001305	HPRD:04218	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
19-PTNLD28-TUMOR_peak_47478	chr19	13056967	13057184	+	19.44120	NA	intron (NR_072976, intron 1 of 7)	CpG	447	NM_001270363	5886	Hs.643267	NM_005053	HPRD:07191	RAD23A	HHR23A|HR23A	RAD23 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_33606	chr15	52554130	52554287	+	19.43954	NA	intron (NM_018728, intron 9 of 40)	intron (NM_018728, intron 9 of 40)	15189	NR_031670	100302202		NR_031670		MIR1266	MIRN1266|hsa-mir-1266	microRNA 1266	ncRNA
19-PTNLD28-TUMOR_peak_29289	chr14	20114611	20114833	+	19.43954	NA	Intergenic	Intergenic	67769	NM_001197287	79334	Hs.554706	NM_001197287		OR11H2	C14orf15|OR11H2P|OR11H8P	olfactory receptor, family 11, subfamily H, member 2	protein-coding
19-PTNLD28-TUMOR_peak_93471	chr7	75892314	75892508	+	19.43954	NA	intron (NM_001291831, intron 8 of 15)	intron (NM_001291831, intron 8 of 15)	-39464	NM_001540	3315	Hs.520973	NM_001540	HPRD:09076	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock 27kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41801	chr17	43325531	43325808	+	19.42742	NA	TTS (NM_005892)	TTS (NM_005892)	377	NR_024434	100133991	Hs.668927	NR_024434	ENSG00000267278	MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9237	chr1	201486739	201487091	+	19.42547	NA	Intergenic	LTR8|LTR|ERV1	-2117	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_7743	chr1	162025904	162026066	+	19.42547	NA	Intergenic	Intergenic	-13596	NM_001164757	9722	Hs.731942	NM_014697	HPRD:12023	NOS1AP	6330408P19Rik|CAPON	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_8584	chr1	180892782	180892952	+	19.41901	NA	intron (NM_020950, intron 3 of 8)	intron (NM_020950, intron 3 of 8)	10554	NM_020950	57710	Hs.734816	NM_020950		KIAA1614	-	KIAA1614	protein-coding
19-PTNLD28-TUMOR_peak_3478	chr1	52029854	52030105	+	19.41295	NA	Intergenic	Intergenic	-44984	NM_001981	2060	Hs.83722	NM_001981	HPRD:08968	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
19-PTNLD28-TUMOR_peak_105216	chr9	110465981	110466283	+	19.40964	NA	Intergenic	Intergenic	-214085	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_59239	chr2	241264945	241265195	+	19.40964	NA	Intergenic	Intergenic	-110045	NM_002081	2817	Hs.328232	NM_002081	HPRD:02671	GPC1	glypican	glypican 1	protein-coding
19-PTNLD28-TUMOR_peak_16855	chr11	6240603	6240912	+	19.40681	NA	intron (NM_032127, intron 6 of 11)	intron (NM_032127, intron 6 of 11)	13959	NM_173525	160298	Hs.278221	NM_173525	HPRD:14590	C11orf42	-	chromosome 11 open reading frame 42	protein-coding
19-PTNLD28-TUMOR_peak_50769	chr2	1066428	1066617	+	19.40681	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	119968	NM_018968	54221	Hs.595069	NM_018968	HPRD:16374	SNTG2	G2SYN|SYN5	syntrophin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_85111	chr6	6851389	6851585	+	19.40681	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-228428	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108576	chrX	65646525	65646650	+	19.40681	NA	Intergenic	L1PA3|LINE|L1	189285	NM_001242310	60401	Hs.302017	NM_021783	HPRD:02230	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_41566	chr17	40906818	40907115	+	19.40681	NA	non-coding (NR_024461, exon 4 of 4)	non-coding (NR_024461, exon 4 of 4)	-6246	NM_005854	10266	Hs.514193	NM_005854	HPRD:05516	RAMP2	-	receptor (G protein-coupled) activity modifying protein 2	protein-coding
19-PTNLD28-TUMOR_peak_82146	chr5	132307711	132308106	+	19.40681	NA	Intergenic	MER41B|LTR|ERV1	-8554	NM_014423	27125	Hs.519313	NM_014423	HPRD:09187	AFF4	AF5Q31|MCEF	AF4/FMR2 family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_68577	chr3	58018084	58018302	+	19.40681	NA	intron (NM_001457, intron 1 of 45)	intron (NM_001457, intron 1 of 45)	24066	NM_001164317	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_82956	chr5	145361560	145361714	+	19.40681	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	45511	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_28409	chr13	66923257	66923680	+	19.40187	NA	intron (NM_020403, intron 3 of 3)	intron (NM_020403, intron 3 of 3)	-475833	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_50868	chr2	5774776	5774896	+	19.40187	NA	intron (NR_110580, intron 4 of 4)	L2c|LINE|L2	56414	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
19-PTNLD28-TUMOR_peak_31687	chr14	91738814	91739214	+	19.40187	NA	exon (NM_001080414, exon 30 of 30)	exon (NM_001080414, exon 30 of 30)	-18790	NM_003485	8111	Hs.8882	NM_003485	HPRD:03241	GPR68	GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
19-PTNLD28-TUMOR_peak_51757	chr2	27750061	27750370	+	19.40187	NA	Intergenic	L1MD3|LINE|L1	30509	NM_001486	2646	Hs.89771	NM_001486	HPRD:02909	GCKR	FGQTL5|GKRP	glucokinase (hexokinase 4) regulator	protein-coding
19-PTNLD28-TUMOR_peak_22982	chr12	9472461	9472756	+	19.40187	NA	Intergenic	L2c|LINE|L2	36355	NR_024374	642846	Hs.447869	NR_024374	ENSG00000111788	LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
19-PTNLD28-TUMOR_peak_7456	chr1	158071891	158072044	+	19.40187	NA	Intergenic	L2c|LINE|L2	38463	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_72379	chr3	172281110	172281296	+	19.40183	NA	Intergenic	Intergenic	-39906	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_24912	chr12	62860981	62861302	+	19.40183	NA	intron (NM_001278469, intron 1 of 35)	intron (NM_001278469, intron 1 of 35)	544	NM_001278469	23041	Hs.389378	NM_015026	HPRD:11123	MON2	-	MON2 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_49128	chr19	41464922	41465177	+	19.39717	NA	Intergenic	LTR14C|LTR|ERVK	-32155	NM_000767	1555	Hs.1360	NM_000767	HPRD:00477	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450, family 2, subfamily B, polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_64341	chr22	19435663	19435914	+	19.39649	NA	promoter-TSS (NM_173793)	promoter-TSS (NM_173793)	-33	NM_173793	128977	Hs.659565	NM_173793	HPRD:14041	C22orf39	-	chromosome 22 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_91127	chr7	5826157	5826327	+	19.38837	NA	Intergenic	Intergenic	-4881	NM_207116	54476	Hs.487458	NM_019011	HPRD:15550	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
19-PTNLD28-TUMOR_peak_77155	chr4	139831775	139831937	+	19.38837	NA	Intergenic	Intergenic	-105057	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_34887	chr15	83199393	83199787	+	19.38837	NA	Intergenic	Intergenic	9618	NR_111943	6218	Hs.433427	NM_001021	HPRD:01600	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17	ribosomal protein S17	protein-coding
19-PTNLD28-TUMOR_peak_78586	chr5	431170	431305	+	19.38631	NA	intron (NM_020731, intron 9 of 11)	intron (NM_020731, intron 9 of 11)	12021	NM_138464	116349	Hs.446702	NM_138464	ENSG00000221990	C5orf55	-	chromosome 5 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_51108	chr2	10972501	10972702	+	19.38631	NA	promoter-TSS (NM_001282704)	promoter-TSS (NM_001282704)	10	NM_001282706	10130	Hs.212102	NM_005742	HPRD:07504	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A, member 6	protein-coding
19-PTNLD28-TUMOR_peak_69028	chr3	72640847	72641035	+	19.38631	NA	Intergenic	Intergenic	-145167	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_102003	chr9	3830390	3830547	+	19.38631	NA	intron (NM_001042413, intron 9 of 10)	MIR|SINE|MIR	-68178	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20287	chr11	78912630	78912825	+	19.38631	NA	intron (NM_001098816, intron 3 of 33)	L2b|LINE|L2	200426	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_2828	chr1	41838072	41838239	+	19.37937	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	10552	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_67938	chr3	46732412	46732546	+	19.37772	NA	intron (NM_147129, intron 1 of 25)	intron (NM_147129, intron 1 of 25)	2667	NM_001190707	259173	Hs.517937	NM_147129	HPRD:10643	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_11302	chr1	241755650	241755821	+	19.36879	NA	TTS (NM_014322)	TTS (NM_014322)	43497	NM_001821	1122	Hs.654545	NM_001821	HPRD:00341	CHML	REP2	choroideremia-like (Rab escort protein 2)	protein-coding
19-PTNLD28-TUMOR_peak_101196	chr8	135173566	135173716	+	19.36205	NA	Intergenic	Intergenic	274902	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_95781	chr7	139475695	139475913	+	19.36080	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	1889	NM_022740	28996	Hs.731417	NM_022740	HPRD:06039	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_74082	chr4	4595502	4595913	+	19.36064	NA	intron (NR_037888, intron 2 of 5)	intron (NR_037888, intron 2 of 5)	51849	NR_037888	100507266	Hs.276795	NR_037888	ENSG00000247708	STX18-AS1	-	STX18 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_511	chr1	8299156	8299352	+	19.36064	NA	Intergenic	AluSx|SINE|Alu	-78891	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11943	chr10	7852516	7853340	+	19.36064	NA	Intergenic	L1MB7|LINE|L1	-7539	NM_031923	83860	Hs.527688	NM_031923		TAF3	TAF140|TAFII-140|TAFII140	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa	protein-coding
19-PTNLD28-TUMOR_peak_16559	chr11	1260152	1260332	+	19.36064	NA	exon (NM_002458, exon 26 of 49)	exon (NM_002458, exon 26 of 49)	15947	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_2126	chr1	32739452	32739653	+	19.36064	NA	promoter-TSS (NM_001042771)	promoter-TSS (NM_001042771)	-160	NM_001042771	3932	Hs.470627	NM_005356	HPRD:01080	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_85056	chr6	5969237	5969409	+	19.36064	NA	Intergenic	Intergenic	34954	NM_001278711	51299	Hs.103291	NM_016588	HPRD:07592	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
19-PTNLD28-TUMOR_peak_103983	chr9	79527584	79528088	+	19.35805	NA	Intergenic	Intergenic	-6833	NM_015225	158471	Hs.262857	NM_015225	HPRD:12970	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_102864	chr9	35673367	35673655	+	19.35805	NA	promoter-TSS (NM_001216)	promoter-TSS (NM_001216)	-404	NM_001216	768	Hs.63287	NM_001216	HPRD:04417	CA9	CAIX|MN	carbonic anhydrase IX	protein-coding
19-PTNLD28-TUMOR_peak_29442	chr14	23067128	23067512	+	19.35805	NA	intron (NM_022060, intron 1 of 6)	intron (NM_022060, intron 1 of 6)	173	NM_022060	63874	Hs.445665	NM_022060	HPRD:12406	ABHD4	ABH4	abhydrolase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_41208	chr17	36387059	36387234	+	19.34444	NA	intron (NR_036750, intron 2 of 11)	HY3|scRNA|scRNA	26110	NR_036750	440434	Hs.443837	NR_036750	ENSG00000174093	LOC440434	-	aminopeptidase puromycin sensitive pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88581	chr6	85318582	85318777	+	19.33855	NA	Intergenic	L1HS|LINE|L1	155275	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_11454	chr1	245520571	245520818	+	19.33855	NA	intron (NM_018012, intron 2 of 14)	L2c|LINE|L2	202407	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_39500	chr16	89859382	89859500	+	19.33855	NA	intron (NM_001286167, intron 11 of 42)	LTR13|LTR|ERVK	23624	NM_001018112	2175	Hs.744083	NM_000135	HPRD:06186	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	Fanconi anemia, complementation group A	protein-coding
19-PTNLD28-TUMOR_peak_41384	chr17	38636007	38636343	+	19.33741	NA	intron (NM_032865, intron 9 of 12)	intron (NM_032865, intron 9 of 12)	21679	NM_032865	84951	Hs.438292	NM_032865	HPRD:12223	TNS4	CTEN	tensin 4	protein-coding
19-PTNLD28-TUMOR_peak_37167	chr16	29827977	29828222	+	19.32721	NA	TTS (NM_145239)	TTS (NM_145239)	571	NM_024516	79447	Hs.702841	NM_024516		PAGR1	C16orf53|GAS|PA1	PAXIP1 associated glutamate-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_66649	chr3	12199947	12200354	+	19.32665	NA	intron (NM_003256, intron 1 of 4)	intron (NM_003256, intron 1 of 4)	701	NM_003256	7079	Hs.591665	NM_003256	HPRD:03557	TIMP4	-	TIMP metallopeptidase inhibitor 4	protein-coding
19-PTNLD28-TUMOR_peak_61580	chr20	46815265	46815539	+	19.32665	NA	Intergenic	L2a|LINE|L2	-173252	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_58798	chr2	232063087	232063565	+	19.32665	NA	promoter-TSS (NM_001291656)	promoter-TSS (NM_001291656)	66	NM_025139	80210	Hs.471610	NM_025139	HPRD:07778	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
19-PTNLD28-TUMOR_peak_107922	chrX	37208542	37208679	+	19.32353	NA	promoter-TSS (NM_001173489)	promoter-TSS (NM_001173489)	27	NM_001173489	5638	Hs.190341	NM_000950	HPRD:05113	PRRG1	PRGP1	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding
19-PTNLD28-TUMOR_peak_92562	chr7	51293134	51293265	+	19.32353	NA	intron (NM_001287436, intron 1 of 13)	intron (NM_001287436, intron 1 of 13)	91316	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_53166	chr2	65949292	65949481	+	19.32353	NA	Intergenic	Intergenic	-289730	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_63608	chr21	41405536	41405730	+	19.32353	NA	intron (NR_073202, intron 32 of 32)	L1PA2|LINE|L1	166286	NM_006198	5121	Hs.80296	NM_006198	HPRD:03378	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
19-PTNLD28-TUMOR_peak_2252	chr1	34393946	34394146	+	19.32353	NA	intron (NM_052896, intron 4 of 69)	MIR|SINE|MIR	59489	NR_038372	402779	Hs.666207	NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9509	chr1	204283317	204283481	+	19.32290	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	45658	NM_014935	22874	Hs.253146	NM_014935	HPRD:09685	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing, family A member 6	protein-coding
19-PTNLD28-TUMOR_peak_17353	chr11	14103993	14104242	+	19.31991	NA	intron (NM_006108, intron 5 of 15)	intron (NM_006108, intron 5 of 15)	119933	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_98870	chr8	56901537	56901715	+	19.31991	NA	intron (NM_001111097, intron 10 of 12)	intron (NM_001111097, intron 10 of 12)	84834	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
19-PTNLD28-TUMOR_peak_7934	chr1	166166468	166166694	+	19.31991	NA	Intergenic	Intergenic	-30623	NM_001017961	149297	Hs.133029	NM_001017961	HPRD:18557	FAM78B	-	family with sequence similarity 78, member B	protein-coding
19-PTNLD28-TUMOR_peak_15153	chr10	99772474	99772764	+	19.31991	NA	intron (NM_018058, intron 1 of 14)	intron (NM_018058, intron 1 of 14)	17966	NM_001206528	55118	Hs.500736	NM_018058	HPRD:10447	CRTAC1	ASPIC|ASPIC1|CEP-68	cartilage acidic protein 1	protein-coding
19-PTNLD28-TUMOR_peak_94763	chr7	106842331	106842587	+	19.31991	NA	3' UTR (NM_006348, exon 22 of 22)	3' UTR (NM_006348, exon 22 of 22)	32999	NM_012257	26959	Hs.162032	NM_012257	HPRD:13634	HBP1	-	HMG-box transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_82052	chr5	130729206	130729413	+	19.31991	NA	3' UTR (NM_001038702, exon 5 of 5)	3' UTR (NM_001038702, exon 5 of 5)	129607	NM_020240	56990	Hs.508829	NM_020240	HPRD:16695	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
19-PTNLD28-TUMOR_peak_1246	chr1	20113556	20113748	+	19.31991	NA	intron (NM_181719, intron 2 of 15)	intron (NM_181719, intron 2 of 15)	12758	NM_181719	255104	Hs.656313	NM_181719	HPRD:14140	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_2365	chr1	36157524	36157690	+	19.31991	NA	Intergenic	Intergenic	27183	NM_152374	127703	Hs.112023	NM_152374	HPRD:08798	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
19-PTNLD28-TUMOR_peak_68630	chr3	58828347	58828483	+	19.31991	NA	intron (NM_198463, intron 12 of 15)	L1PA2|LINE|L1	18218	NR_110820	101929238	Hs.683953	NR_110820	ENSG00000242428	C3orf67-AS1	-	C3orf67 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38415	chr16	68362531	68362791	+	19.31991	NA	intron (NM_001290018, intron 5 of 18)	intron (NM_001290018, intron 5 of 18)	17644	NM_001290018	54496	Hs.653193	NM_019023	HPRD:15174	PRMT7	-	protein arginine methyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_83607	chr5	159592199	159592385	+	19.31991	NA	Intergenic	Intergenic	-22082	NM_001130958	2172	Hs.519719	NM_001445	HPRD:02689	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6, ileal	protein-coding
19-PTNLD28-TUMOR_peak_77694	chr4	154354229	154354554	+	19.31991	NA	Intergenic	Intergenic	-33107	NM_001131007	23240	Hs.732450	NM_015196	HPRD:13823	KIAA0922	TMEM131L	KIAA0922	protein-coding
19-PTNLD28-TUMOR_peak_100718	chr8	126698587	126698788	+	19.31991	NA	Intergenic	Intergenic	254236	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_36276	chr16	11143382	11143549	+	19.31991	NA	intron (NM_015226, intron 16 of 22)	intron (NM_015226, intron 16 of 22)	105120	NM_001243403	23274	Hs.35490	NM_015226	HPRD:17185	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16, member A	protein-coding
19-PTNLD28-TUMOR_peak_6940	chr1	153317285	153317432	+	19.31680	NA	intron (NM_020393, intron 4 of 8)	intron (NM_020393, intron 4 of 8)	3664	NM_020393	57115	Hs.58356	NM_020393	HPRD:16298	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB	peptidoglycan recognition protein 4	protein-coding
19-PTNLD28-TUMOR_peak_55704	chr2	131151010	131151190	+	19.31367	NA	Intergenic	Intergenic	35019	NR_046259	100216479	Hs.131740	NR_046258		FAR2P2	-	fatty acyl CoA reductase 2 pseudogene 2	ncRNA
19-PTNLD28-TUMOR_peak_48256	chr19	22709740	22709954	+	19.31165	NA	non-coding (NR_110427, exon 1 of 5)	non-coding (NR_110427, exon 1 of 5)	904	NR_110427	101929124	Hs.589610	NR_110427	ENSG00000260599	LOC101929124	-	uncharacterized LOC101929124	ncRNA
19-PTNLD28-TUMOR_peak_41889	chr17	44516200	44516380	+	19.31165	NA	Intergenic	MIR3|SINE|MIR	66111	NR_033799	728806	Hs.735097	NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_98941	chr8	60845039	60845316	+	19.31165	NA	Intergenic	Zaphod3|DNA|hAT-Tip100	348777	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
19-PTNLD28-TUMOR_peak_80116	chr5	59064417	59064646	+	19.31165	NA	promoter-TSS (NM_001197218)	promoter-TSS (NM_001197218)	-93	NM_001197218	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_88229	chr6	70876300	70876478	+	19.31165	NA	intron (NM_001858, intron 37 of 50)	intron (NM_001858, intron 37 of 50)	116522	NM_078485	1297	Hs.590892	NM_001851	HPRD:00367	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen, type IX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_89162	chr6	113241038	113241165	+	19.31165	NA	Intergenic	L1PA2|LINE|L1	572569	NM_001013734	442247	Hs.448264	NM_001013734	HPRD:18472	RFPL4B	RNF211	ret finger protein-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_104157	chr9	85814304	85814466	+	19.31165	NA	Intergenic	Intergenic	67817	NM_001244962	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_27964	chr13	41450272	41450500	+	19.31165	NA	intron (NR_038259, intron 1 of 5)	HERVE-int|LTR|ERV1	45500	NR_038259	100616668	Hs.660718	NR_038258		TPTE2P5	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_88356	chr6	74508414	74508634	+	19.31165	NA	intron (NM_133493, intron 23 of 32)	intron (NM_133493, intron 23 of 32)	-102670	NR_110889	101928489	Hs.660059	NR_110889		LOC101928489	-	uncharacterized LOC101928489	ncRNA
19-PTNLD28-TUMOR_peak_22871	chr12	7708495	7708612	+	19.31165	NA	Intergenic	Intergenic	-52139	NM_004244	9332	Hs.504641	NM_004244	HPRD:05708	CD163	M130|MM130	CD163 molecule	protein-coding
19-PTNLD28-TUMOR_peak_60656	chr20	33209600	33209793	+	19.31165	NA	intron (NM_080476, intron 6 of 11)	intron (NM_080476, intron 6 of 11)	55393	NM_080476	128869	Hs.253319	NM_080476	HPRD:12250	PIGU	CDC91L1|GAB1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding
19-PTNLD28-TUMOR_peak_81241	chr5	95918128	95918322	+	19.31165	NA	Intergenic	Intergenic	-79516	NM_001190442	831	Hs.436186	NM_001750	HPRD:00233	CAST	BS-17	calpastatin	protein-coding
19-PTNLD28-TUMOR_peak_68175	chr3	50010889	50011056	+	19.31165	NA	intron (NM_005777, intron 4 of 20)	MIR|SINE|MIR	33495	NM_001167582	10180	Hs.696735	NM_005777	HPRD:06054	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
19-PTNLD28-TUMOR_peak_89664	chr6	138668032	138668193	+	19.31165	NA	Intergenic	Intergenic	-57224	NM_014320	23593	Hs.486589	NM_014320		HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_55647	chr2	130444003	130444148	+	19.31165	NA	Intergenic	L1HS|LINE|L1	-236675	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_77776	chr4	157090223	157090512	+	19.31165	NA	Intergenic	LTR41B|LTR|ERVL	-215319	NM_001334	1519	Hs.75262	NM_001334	HPRD:02772	CTSO	CTSO1	cathepsin O	protein-coding
19-PTNLD28-TUMOR_peak_28586	chr13	80205514	80205743	+	19.31165	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	64766	NR_125772	103724388	Hs.434862	NR_125772		LINC01068	-	long intergenic non-protein coding RNA 1068	ncRNA
19-PTNLD28-TUMOR_peak_87851	chr6	47148482	47148662	+	19.31165	NA	Intergenic	HERVL-int|LTR|ERVL	129111	NM_014452	27242	Hs.443577	NM_014452	HPRD:05759	TNFRSF21	BM-018|CD358|DR6	tumor necrosis factor receptor superfamily, member 21	protein-coding
19-PTNLD28-TUMOR_peak_15563	chr10	111577942	111578145	+	19.31165	NA	Intergenic	L1HS|LINE|L1	105268	NM_001167604	7511	Hs.390623	NM_020383	HPRD:03899	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_32422	chr14	107210823	107211081	+	19.31165	NA	Intergenic	Intergenic	272507	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_104298	chr9	89109676	89110014	+	19.31165	NA	Intergenic	Intergenic	-140443	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_87861	chr6	47414804	47415002	+	19.31165	NA	Intergenic	MIRb|SINE|MIR	-30622	NM_012120	23607	Hs.485518	NM_012120	HPRD:05026	CD2AP	CMS	CD2-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_20312	chr11	79177579	79177734	+	19.31165	NA	Intergenic	Intergenic	-25961	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_88955	chr6	106787343	106787478	+	19.31165	NA	Intergenic	L2c|LINE|L2	-13715	NM_001286111	9474	Hs.486063	NM_004849	HPRD:16051	ATG5	APG5|APG5-LIKE|APG5L|ASP|hAPG5	autophagy related 5	protein-coding
19-PTNLD28-TUMOR_peak_103788	chr9	74202988	74203175	+	19.31165	NA	Intergenic	MIRc|SINE|MIR	180719	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_77563	chr4	151690497	151690653	+	19.31165	NA	intron (NM_006726, intron 34 of 57)	MLT2B4|LTR|ERVL	187498	NM_006439	10586	Hs.584852	NM_006439	HPRD:05075	MAB21L2	MCOPS14	mab-21-like 2 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_22996	chr12	10021940	10022518	+	19.31165	NA	5' UTR (NM_005127, exon 1 of 5)	5' UTR (NM_005127, exon 1 of 5)	229	NM_005127	9976	Hs.85201	NM_005127		CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2, member B	protein-coding
19-PTNLD28-TUMOR_peak_14692	chr10	86708529	86708713	+	19.31165	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	250040	NR_120668	101929624	Hs.588831	NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
19-PTNLD28-TUMOR_peak_40314	chr17	16232944	16233123	+	19.31165	NA	Intergenic	Intergenic	23779	NM_181716	201161	Hs.433422	NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
19-PTNLD28-TUMOR_peak_64945	chr22	28632993	28633379	+	19.31165	NA	intron (NM_001145418, intron 5 of 22)	CT-rich|Low_complexity|Low_complexity	-222671	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
19-PTNLD28-TUMOR_peak_85224	chr6	8686449	8686649	+	19.31165	NA	intron (NR_038980, intron 3 of 4)	intron (NR_038980, intron 3 of 4)	34107	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_25609	chr12	94018890	94019097	+	19.31165	NA	Intergenic	Intergenic	-52158	NM_003805	8738	Hs.38533	NM_003805	HPRD:04584	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
19-PTNLD28-TUMOR_peak_68877	chr3	67609710	67609946	+	19.31165	NA	intron (NM_003848, intron 2 of 10)	THE1D|LTR|ERVL-MaLR	95210	NM_003848	8801	Hs.644919	NM_003848	HPRD:06799	SUCLG2	GBETA	succinate-CoA ligase, GDP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_45804	chr18	51627295	51627501	+	19.31165	NA	Intergenic	Intergenic	121384	NR_002970	677819	Hs.655869	NR_002970		SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
19-PTNLD28-TUMOR_peak_28910	chr13	103809444	103809692	+	19.31165	NA	Intergenic	L4|LINE|RTE	-90372	NM_000452	6555	Hs.194783	NM_000452	HPRD:03189	SLC10A2	ASBT|IBAT|ISBT|NTCP2|PBAM	solute carrier family 10 (sodium/bile acid cotransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_89921	chr6	149629341	149629497	+	19.31165	NA	intron (NM_001292035, intron 1 of 5)	L1ME4a|LINE|L1	-9695	NM_001292034	23118	Hs.269775	NM_015093	HPRD:05483	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_38710	chr16	74743455	74743688	+	19.31165	NA	Intergenic	Intergenic	-8782	NM_001142497	197259	Hs.119878	NM_152649	HPRD:08752	MLKL	hMLKL	mixed lineage kinase domain-like	protein-coding
19-PTNLD28-TUMOR_peak_69056	chr3	73078545	73078757	+	19.31165	NA	intron (NM_174907, intron 2 of 8)	L2a|LINE|L2	-32159	NM_018029	55096	Hs.658858	NM_018029	HPRD:07654	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
19-PTNLD28-TUMOR_peak_53606	chr2	75290845	75290980	+	19.31165	NA	intron (NM_015727, intron 2 of 3)	intron (NM_015727, intron 2 of 3)	-27027	NR_049796	100846995		NR_049796	miRBase:MI0017866	MIR5000	-	microRNA 5000	ncRNA
19-PTNLD28-TUMOR_peak_34164	chr15	68497641	68497812	+	19.31165	NA	non-coding (NR_104583, exon 1 of 2)	non-coding (NR_104583, exon 1 of 2)	722	NR_104583	91860	Hs.709550	NM_033429		CALML4	NY-BR-20	calmodulin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_5686	chr1	115016127	115016274	+	19.31165	NA	intron (NM_033020, intron 1 of 18)	LTR10F|LTR|ERV1	37581	NM_015906	51592	Hs.26837	NM_015906	HPRD:10423	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
19-PTNLD28-TUMOR_peak_9084	chr1	198418545	198418721	+	19.31165	NA	Intergenic	Intergenic	91442	NM_133262	127124	Hs.127743	NM_133262	HPRD:16526	ATP6V1G3	ATP6G3|Vma10	ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3	protein-coding
19-PTNLD28-TUMOR_peak_41900	chr17	44733773	44733953	+	19.31165	NA	intron (NR_040116, intron 7 of 19)	MIR3|SINE|MIR	65763	NR_033799	728806	Hs.735097	NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_12380	chr10	23305684	23305878	+	19.31165	NA	intron (NM_173081, intron 16 of 18)	intron (NM_173081, intron 16 of 18)	-78646	NM_012228	22921	Hs.461420	NM_012228	HPRD:17606	MSRB2	CBS-1|CBS1|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
19-PTNLD28-TUMOR_peak_10555	chr1	227531829	227532012	+	19.31165	NA	Intergenic	Intergenic	-26094	NM_003607	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_77945	chr4	166701582	166701762	+	19.31165	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-37449	NR_121677	101928131	Hs.406479	NR_121677		LOC101928131	-	uncharacterized LOC101928131	ncRNA
19-PTNLD28-TUMOR_peak_78949	chr5	11792014	11792169	+	19.31165	NA	intron (NM_001288717, intron 1 of 20)	intron (NM_001288717, intron 1 of 20)	112064	NR_109988	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_57971	chr2	205556705	205556881	+	19.31165	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	146277	NM_057177	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_33577	chr15	51973586	51973789	+	19.31165	NA	5' UTR (NM_013243, exon 1 of 12)	5' UTR (NM_013243, exon 1 of 12)	137	NM_013243	29106	Hs.232618	NM_013243	HPRD:11538	SCG3	SGIII	secretogranin III	protein-coding
19-PTNLD28-TUMOR_peak_44797	chr18	19536121	19536259	+	19.31165	NA	Intergenic	L1MEf|LINE|L1	-124823	NR_110369	102723167	Hs.658808	NR_110369		MIR133A1HG	MIR1-2HG	MIR133A1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_76822	chr4	120971063	120971284	+	19.31165	NA	Intergenic	Intergenic	16840	NM_002358	4085	Hs.591697	NM_002358		MAD2L1	HSMAD2|MAD2	MAD2 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_67990	chr3	47612988	47613144	+	19.31165	NA	intron (NM_006574, intron 3 of 4)	intron (NM_006574, intron 3 of 4)	7293	NM_001206944	10675	Hs.45127	NM_006574		CSPG5	NGC	chondroitin sulfate proteoglycan 5 (neuroglycan C)	protein-coding
19-PTNLD28-TUMOR_peak_82318	chr5	134801938	134802102	+	19.31165	NA	Intergenic	Intergenic	-13931	NM_001099221	497189	Hs.552091	NM_001099221		TIFAB	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding
19-PTNLD28-TUMOR_peak_23810	chr12	41891214	41891479	+	19.31165	NA	intron (NM_013377, intron 1 of 7)	intron (NM_013377, intron 1 of 7)	59805	NM_013377	29951	Hs.380044	NM_013377	HPRD:15116	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
19-PTNLD28-TUMOR_peak_4611	chr1	85755289	85755588	+	19.31165	NA	Intergenic	MIR|SINE|MIR	-12851	NM_003921	8915	Hs.193516	NM_003921	HPRD:04625	BCL10	CARMEN|CIPER|CLAP|c-E10|mE10	B-cell CLL/lymphoma 10	protein-coding
19-PTNLD28-TUMOR_peak_75752	chr4	77262301	77262471	+	19.31165	NA	intron (NM_001042784, intron 17 of 23)	intron (NM_001042784, intron 17 of 23)	35207	NM_003943	8987	Hs.109590	NM_003943	HPRD:08460	STBD1	GENEX3414	starch binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_34059	chr15	66420731	66420960	+	19.31165	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	88274	NR_036196	100422905		NR_036196	miRBase:MI0015841	MIR4311	-	microRNA 4311	ncRNA
19-PTNLD28-TUMOR_peak_29674	chr14	27897116	27897277	+	19.31165	NA	Intergenic	LTR43|LTR|ERV1	-184598	NR_039992	100505967	Hs.668484	NR_039992	ENSG00000258548	LINC00645	-	long intergenic non-protein coding RNA 645	ncRNA
19-PTNLD28-TUMOR_peak_14412	chr10	77258288	77258488	+	19.31165	NA	Intergenic	Plat_L3|LINE|CR1	89473	NR_110304	101929234	Hs.694695	NR_110304	ENSG00000272692	LOC101929234	-	uncharacterized LOC101929234	ncRNA
19-PTNLD28-TUMOR_peak_89956	chr6	150275136	150275318	+	19.31165	NA	Intergenic	L1MC4a|LINE|L1	-9916	NM_025218	80329	Hs.653255	NM_025218	HPRD:09297	ULBP1	RAET1I	UL16 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_8841	chr1	184951255	184951529	+	19.31165	NA	Intergenic	Intergenic	-7674	NM_052966	116496	Hs.518662	NM_052966	HPRD:10725	FAM129A	C1orf24|NIBAN	family with sequence similarity 129, member A	protein-coding
19-PTNLD28-TUMOR_peak_51928	chr2	30294807	30294958	+	19.31165	NA	Intergenic	Intergenic	-74868	NM_001127400	51646	Hs.515890	NM_016061	HPRD:18312	YPEL5	-	yippee-like 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_59846	chr20	12152826	12153114	+	19.31165	NA	Intergenic	MER89|LTR|ERV1	254457	NM_014962	22903	Hs.709366	NM_014962	HPRD:12538	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_88227	chr6	70720638	70720798	+	19.31165	NA	intron (NM_001858, intron 11 of 50)	L1HS|LINE|L1	144270	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	collagen, type XIX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_59503	chr20	2332603	2332810	+	19.31165	NA	Intergenic	Intergenic	-28848	NM_198994	343641	Hs.452039	NM_198994	HPRD:15495	TGM6	SCA35|TG6|TGM3L|TGY|dJ734P14.3	transglutaminase 6	protein-coding
19-PTNLD28-TUMOR_peak_33572	chr15	51742293	51742453	+	19.31165	NA	exon (NM_001174117, exon 40 of 41)	exon (NM_001174117, exon 40 of 41)	108660	NM_181789	342035	Hs.526441	NM_181789	HPRD:12267	GLDN	CLOM|COLM|CRG-L2|CRGL2|UNC-112	gliomedin	protein-coding
19-PTNLD28-TUMOR_peak_18061	chr11	35536895	35537050	+	19.31165	NA	intron (NM_001282675, intron 2 of 12)	intron (NM_001282675, intron 2 of 12)	10607	NM_015430	25891	Hs.55044	NM_015430	HPRD:07104	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
19-PTNLD28-TUMOR_peak_76244	chr4	89945357	89945463	+	19.31165	NA	intron (NM_014883, intron 2 of 23)	intron (NM_014883, intron 2 of 23)	32936	NM_014883	10144	Hs.97270	NM_014883	HPRD:10944	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13, member A	protein-coding
19-PTNLD28-TUMOR_peak_104234	chr9	87454568	87454713	+	19.31165	NA	intron (NM_001018064, intron 11 of 16)	intron (NM_001018064, intron 11 of 16)	169348	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_93950	chr7	92533593	92533912	+	19.31165	NA	intron (NR_110087, intron 2 of 2)	intron (NR_110087, intron 2 of 2)	-67811	NM_001145306	1021	Hs.119882	NM_001259	HPRD:04533	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_28934	chr13	105500396	105500567	+	19.31165	NA	Intergenic	L1MCa|LINE|L1	-617735	NM_001161814	267012	Hs.381382	NM_172370	HPRD:07591	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
19-PTNLD28-TUMOR_peak_28886	chr13	102222722	102223099	+	19.31165	NA	intron (NM_001271754, intron 2 of 10)	MER57F|LTR|ERV1	80607	NM_001271756	9358	Hs.696554	NM_004791	HPRD:07253	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
19-PTNLD28-TUMOR_peak_57599	chr2	196501722	196501911	+	19.31165	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-19716	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_4486	chr1	79545584	79545767	+	19.31165	NA	Intergenic	Intergenic	-73180	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	EGF, latrophilin and seven transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59738	chr20	9093863	9094068	+	19.31165	NA	intron (NM_001172646, intron 1 of 37)	intron (NM_001172646, intron 1 of 37)	44264	NM_001172646	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_8377	chr1	176508303	176508513	+	19.31165	NA	intron (NM_021936, intron 1 of 4)	intron (NM_021936, intron 1 of 4)	76101	NM_021936	60676	Hs.187284	NM_020318	HPRD:10156	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
19-PTNLD28-TUMOR_peak_89485	chr6	132655524	132655666	+	19.31165	NA	intron (NM_015529, intron 4 of 11)	intron (NM_015529, intron 4 of 11)	67078	NM_015529	26002	Hs.6909	NM_015529	HPRD:10093	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase, DBH-like 1	protein-coding
19-PTNLD28-TUMOR_peak_106656	chr9	137516793	137516970	+	19.31165	NA	Intergenic	Intergenic	-16770	NM_001278074	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_101906	chr9	649454	649649	+	19.31165	NA	intron (NM_001256877, intron 2 of 12)	intron (NM_001256877, intron 2 of 12)	-57255	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_68875	chr3	67164288	67164491	+	19.31165	NA	Intergenic	Intergenic	-111499	NR_036234	100422941		NR_036234		MIR4272	-	microRNA 4272	ncRNA
19-PTNLD28-TUMOR_peak_23046	chr12	11661770	11661906	+	19.31165	NA	Intergenic	MER39|LTR|ERV1	-39126	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
19-PTNLD28-TUMOR_peak_75402	chr4	56732598	56732767	+	19.31165	NA	intron (NM_001024924, intron 4 of 18)	intron (NM_001024924, intron 4 of 18)	12866	NM_178237	55763	Hs.269665	NM_018261	HPRD:07615	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
19-PTNLD28-TUMOR_peak_56822	chr2	168719374	168719592	+	19.31165	NA	intron (NM_020981, intron 1 of 1)	intron (NM_020981, intron 1 of 1)	44301	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_83699	chr5	167170819	167170994	+	19.31165	NA	intron (NM_001122679, intron 2 of 28)	intron (NM_001122679, intron 2 of 28)	459063	NM_001122679	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23881	chr12	44290436	44290611	+	19.31165	NA	intron (NM_001286213, intron 2 of 6)	MLT1M|LTR|ERVL-MaLR	60859	NM_001286213	84216	Hs.444668	NM_032256	HPRD:13193	TMEM117	-	transmembrane protein 117	protein-coding
19-PTNLD28-TUMOR_peak_78125	chr4	177364407	177364542	+	19.31165	NA	Intergenic	Intergenic	123384	NM_021928	60559	Hs.42194	NM_021928	HPRD:08001	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75846	chr4	78718538	78718683	+	19.31165	NA	intron (NM_144571, intron 1 of 11)	Tigger7|DNA|TcMar-Tigger	21934	NM_001286790	246175	Hs.592519	NM_144571	HPRD:10841	CNOT6L	CCR4b	CCR4-NOT transcription complex, subunit 6-like	protein-coding
19-PTNLD28-TUMOR_peak_68075	chr3	48835179	48835347	+	19.31165	NA	intron (NM_004157, intron 2 of 10)	L1M6|LINE|L1	50007	NM_004157	5576	Hs.631923	NM_004157	HPRD:01484	PRKAR2A	PKR2|PRKAR2	protein kinase, cAMP-dependent, regulatory, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_66405	chr3	8887439	8887655	+	19.31165	NA	Intergenic	Intergenic	-76247	NM_000916	5021	Hs.2820	NM_000916	HPRD:01328	OXTR	OT-R	oxytocin receptor	protein-coding
19-PTNLD28-TUMOR_peak_106839	chr9	140181513	140181659	+	19.31165	NA	Intergenic	Intergenic	9306	NM_017723	54863	Hs.495541	NM_017723	HPRD:07886	TOR4A	C9orf167	torsin family 4, member A	protein-coding
19-PTNLD28-TUMOR_peak_56063	chr2	139934740	139934898	+	19.31165	NA	Intergenic	Intergenic	279925	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_45015	chr18	24443189	24443401	+	19.31165	NA	promoter-TSS (NM_004028)	promoter-TSS (NM_004028)	-720	NM_004028	361	Hs.315369	NM_001650	HPRD:02631	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
19-PTNLD28-TUMOR_peak_8871	chr1	185497496	185497752	+	19.31165	NA	Intergenic	Intergenic	99996	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
19-PTNLD28-TUMOR_peak_91330	chr7	14353306	14353485	+	19.31165	NA	intron (NM_004080, intron 22 of 24)	L1PA3|LINE|L1	-322345	NM_001163148	2115	Hs.22634	NM_004956	HPRD:02765	ETV1	ER81	ets variant 1	protein-coding
19-PTNLD28-TUMOR_peak_52117	chr2	36734627	36734753	+	19.31165	NA	intron (NM_016441, intron 8 of 16)	L2b|LINE|L2	90642	NM_001042548	9637	Hs.258563	NM_005102	HPRD:09213	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
19-PTNLD28-TUMOR_peak_104233	chr9	87438798	87438956	+	19.31165	NA	intron (NM_001018064, intron 11 of 16)	LTR16A2|LTR|ERVL	153585	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_8905	chr1	186409799	186410012	+	19.31165	NA	intron (NR_031642, intron 1 of 3)	intron (NR_031642, intron 1 of 3)	7951	NM_022576	5132	Hs.654381	NM_002597	HPRD:01373	PDC	MEKA|PHD|PhLOP|PhLP	phosducin	protein-coding
19-PTNLD28-TUMOR_peak_77804	chr4	158101468	158101627	+	19.31165	NA	Intergenic	L1PA3|LINE|L1	-40189	NM_000826	2891	Hs.32763	NM_000826	HPRD:04726	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2	glutamate receptor, ionotropic, AMPA 2	protein-coding
19-PTNLD28-TUMOR_peak_56652	chr2	161920292	161920446	+	19.31165	NA	Intergenic	Intergenic	-73097	NM_133484	10010	Hs.132257	NM_004180	HPRD:04870	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member-associated NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_20829	chr11	101557395	101557539	+	19.31165	NA	Intergenic	Plat_L3|LINE|CR1	-102808	NM_004621	7225	Hs.159003	NM_004621	HPRD:04710	TRPC6	FSGS2|TRP6	transient receptor potential cation channel, subfamily C, member 6	protein-coding
19-PTNLD28-TUMOR_peak_45475	chr18	43632154	43632370	+	19.31165	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	19988	NM_024430	9050	Hs.567384	NM_024430	HPRD:06687	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_14827	chr10	91020238	91020374	+	19.31165	NA	Intergenic	Intergenic	-8510	NM_000235	3988	Hs.643030	NM_000235	HPRD:02044	LIPA	CESD|LAL	lipase A, lysosomal acid, cholesterol esterase	protein-coding
19-PTNLD28-TUMOR_peak_25231	chr12	70332905	70333023	+	19.31165	NA	Intergenic	L1PA3|LINE|L1	160232	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_16080	chr10	125069432	125069564	+	19.31165	NA	Intergenic	Intergenic	155738	NM_004725	9184	Hs.418533	NM_004725	HPRD:04761	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
19-PTNLD28-TUMOR_peak_102207	chr9	13665797	13665983	+	19.31165	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-234562	NR_033863	401492	Hs.632651	NR_033863	ENSG00000270547	LINC01235	-	long intergenic non-protein coding RNA 1235	ncRNA
19-PTNLD28-TUMOR_peak_74722	chr4	21309237	21309639	+	19.31165	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-3909	NM_147183	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_100172	chr8	116588692	116588851	+	19.31165	NA	intron (NM_001282902, intron 4 of 5)	MIRc|SINE|MIR	91468	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_78332	chr4	185915777	185916048	+	19.31165	NA	Intergenic	Intergenic	-24083	NM_001300782	391723	Hs.531242	NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_31363	chr14	76297831	76298036	+	19.31165	NA	intron (NM_015072, intron 28 of 31)	intron (NM_015072, intron 28 of 31)	150432	NM_003239	7043	Hs.592317	NM_003239		TGFB3	ARVD|ARVD1|RNHF|TGF-beta3	transforming growth factor, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_106051	chr9	127474288	127474485	+	19.31165	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	18397	NR_029782	406956		NR_029782	miRBase:MI0000683	MIR181B2	MIRN181B2	microRNA 181b-2	ncRNA
19-PTNLD28-TUMOR_peak_91346	chr7	15930890	15931015	+	19.31165	NA	Intergenic	Intergenic	202949	NR_110094	101927524	Hs.386790	NR_110094		MEOX2-AS1	-	MEOX2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_62924	chr21	20980645	20980919	+	19.31165	NA	Intergenic	LTR38|LTR|ERV1	-848652	NR_109925	101927797	Hs.551743	NR_109925		LOC101927797	-	uncharacterized LOC101927797	ncRNA
19-PTNLD28-TUMOR_peak_19901	chr11	72643406	72643583	+	19.31165	NA	intron (NM_014824, intron 8 of 19)	L2b|LINE|L2	118043	NM_033388	89849	Hs.653186	NM_033388	HPRD:10959	ATG16L2	ATG16B|WDR80	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75481	chr4	59167654	59168080	+	19.31165	NA	Intergenic	LTR65|LTR|ERV1	-1191316	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_54688	chr2	106406702	106406893	+	19.31165	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	45277	NM_001004722	8440	Hs.529244	NM_003581	HPRD:05378	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_68735	chr3	63710737	63710921	+	19.31165	NA	Intergenic	Intergenic	72485	NM_001080537	132203	Hs.130704	NM_001080537		SNTN	S100A1L|S100AL|sentan	sentan, cilia apical structure protein	protein-coding
19-PTNLD28-TUMOR_peak_107843	chrX	25101912	25102048	+	19.31165	NA	Intergenic	Intergenic	-67915	NM_139058	170302	Hs.300304	NM_139058	HPRD:02307	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
19-PTNLD28-TUMOR_peak_59762	chr20	9959122	9959315	+	19.31165	NA	Intergenic	Intergenic	-7763	NR_109861	101929371	Hs.619265	NR_109861	ENSG00000243961	LOC101929371	-	uncharacterized LOC101929371	ncRNA
19-PTNLD28-TUMOR_peak_94902	chr7	116083215	116083371	+	19.31165	NA	Intergenic	Intergenic	-56362	NM_001206747	858	Hs.212332	NM_001233	HPRD:03029	CAV2	CAV	caveolin 2	protein-coding
19-PTNLD28-TUMOR_peak_110295	chrY	15676571	15676742	+	19.31165	NA	Intergenic	L1PA2|LINE|L1	-84106	NR_047601	7404	Hs.115277	NM_007125	HPRD:02451	UTY	KDM6AL|UTY1	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_9341	chr1	202501121	202501324	+	19.31165	NA	intron (NM_002481, intron 18 of 23)	MER41B|LTR|ERV1	-8020	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_89727	chr6	141300836	141301196	+	19.31165	NA	Intergenic	Intergenic	296065	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_31121	chr14	71091808	71091992	+	19.31165	NA	intron (NR_110071, intron 2 of 2)	LTR32|LTR|ERVL	16115	NR_110071	101928075	Hs.737532	NR_110071	ENSG00000245466	LOC101928075	-	uncharacterized LOC101928075	ncRNA
19-PTNLD28-TUMOR_peak_40947	chr17	30023206	30023512	+	19.31165	NA	Intergenic	Intergenic	120929	NR_029856	100126356		NR_029856	miRBase:MI0000769	MIR365B	MIR365-2|MIRN365-2|hsa-mir-365b	microRNA 365b	ncRNA
19-PTNLD28-TUMOR_peak_75909	chr4	80744398	80744621	+	19.31165	NA	Intergenic	Intergenic	-4116	NR_026555	118425	Hs.104215	NR_026555	HPRD:17035	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_27413	chr13	22102860	22103128	+	19.31165	NA	intron (NM_152726, intron 4 of 11)	L2c|LINE|L2	-69485	NR_104486	253832	Hs.564611	NM_153251		ZDHHC20	4933421L13Rik|DHHC-20	zinc finger, DHHC-type containing 20	protein-coding
19-PTNLD28-TUMOR_peak_102615	chr9	31443837	31444032	+	19.31165	NA	Intergenic	LTR2B|LTR|ERV1	-940667	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_77123	chr4	138089187	138089499	+	19.31165	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	364309	NM_019035	54510	Hs.591691	NM_019035	HPRD:12205	PCDH18	PCDH68L	protocadherin 18	protein-coding
19-PTNLD28-TUMOR_peak_103875	chr9	75962679	75962989	+	19.31165	NA	Intergenic	Intergenic	196053	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_21290	chr11	114103274	114103429	+	19.31165	NA	intron (NM_001018011, intron 4 of 6)	(GGCTG)n|Simple_repeat|Simple_repeat	-63184	NM_006169	4837	Hs.503911	NM_006169	HPRD:02478	NNMT	-	nicotinamide N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_34656	chr15	77873838	77874007	+	19.31165	NA	Intergenic	Intergenic	50947	NM_032808	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72562	chr3	178689521	178689681	+	19.31165	NA	Intergenic	Intergenic	100055	NM_152240	64393	Hs.371609	NM_022470	HPRD:07343	ZMAT3	PAG608|WIG-1|WIG1	zinc finger, matrin-type 3	protein-coding
19-PTNLD28-TUMOR_peak_24880	chr12	60495487	60495679	+	19.31165	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	412465	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_103066	chr9	38516368	38516500	+	19.31165	NA	Intergenic	Charlie1|DNA|hAT-Charlie	28935	NR_047651	100289137	Hs.732599	NR_047651		FAM95C	-	family with sequence similarity 95, member C	ncRNA
19-PTNLD28-TUMOR_peak_34933	chr15	84144388	84144524	+	19.31165	NA	intron (NR_125370, intron 1 of 9)	intron (NR_125370, intron 1 of 9)	28365	NR_026799	6457	Hs.270055	NM_003027	HPRD:04528	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_10138	chr1	220543847	220544024	+	19.31165	NA	Intergenic	Intergenic	-98092	NM_012414	25782	Hs.654849	NM_012414	HPRD:11471	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating protein subunit 2 (non-catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_18859	chr11	61153167	61153326	+	19.31165	NA	Intergenic	LTR41B|LTR|ERVL	-6586	NM_001173991	51259	Hs.26745	NM_016499	HPRD:14439	TMEM216	-	transmembrane protein 216	protein-coding
19-PTNLD28-TUMOR_peak_76385	chr4	100777408	100777565	+	19.31165	NA	intron (NM_014395, intron 4 of 8)	L2a|LINE|L2	38217	NR_024170	8649	Hs.433332	NM_021970	HPRD:04485	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
19-PTNLD28-TUMOR_peak_7615	chr1	160645334	160645614	+	19.31165	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-28373	NM_003037	6504	Hs.523660	NM_003037	HPRD:04603	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
19-PTNLD28-TUMOR_peak_109081	chrX	106379061	106379204	+	19.31165	NA	intron (NR_033676, intron 6 of 6)	Tigger7|DNA|TcMar-Tigger	-17075	NM_001171080	55285	Hs.139053	NM_018301		RBM41	-	RNA binding motif protein 41	protein-coding
19-PTNLD28-TUMOR_peak_16951	chr11	8214247	8214400	+	19.31165	NA	Intergenic	Intergenic	-23733	NR_045405	79608	Hs.231850	NM_024557	HPRD:17974	RIC3	AYST720|PRO1385	RIC3 acetylcholine receptor chaperone	protein-coding
19-PTNLD28-TUMOR_peak_68434	chr3	54248050	54248235	+	19.31165	NA	intron (NM_018398, intron 2 of 37)	intron (NM_018398, intron 2 of 37)	91449	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_59274	chr2	241790698	241790872	+	19.31165	NA	Intergenic	Intergenic	-17377	NM_000030	189	Hs.144567	NM_000030	HPRD:05048	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6	alanine-glyoxylate aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_28963	chr13	107098346	107098679	+	19.31165	NA	Intergenic	Intergenic	69601	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
19-PTNLD28-TUMOR_peak_76226	chr4	89460761	89460869	+	19.31165	NA	Intergenic	L1PA6|LINE|L1	-15863	NM_001042616	84992	Hs.26136	NM_001042616	HPRD:17492	PIGY	PIG-Y	phosphatidylinositol glycan anchor biosynthesis, class Y	protein-coding
19-PTNLD28-TUMOR_peak_109229	chrX	114817135	114817397	+	19.31165	NA	intron (NM_001282337, intron 1 of 17)	AluJb|SINE|Alu	-10553	NM_001136025	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_27872	chr13	38191318	38191601	+	19.31165	NA	Intergenic	Intergenic	-18478	NM_001135935	10631	Hs.136348	NM_006475	HPRD:12295	POSTN	OSF-2|OSF2|PDLPOSTN|PN|periostin	periostin, osteoblast specific factor	protein-coding
19-PTNLD28-TUMOR_peak_25447	chr12	80856089	80856213	+	19.31165	NA	intron (NM_001145026, intron 3 of 41)	L1PA3|LINE|L1	18025	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
19-PTNLD28-TUMOR_peak_87054	chr6	35861130	35861291	+	19.31165	NA	intron (NR_034069, intron 2 of 15)	AluJb|SINE|Alu	27747	NR_034069	6732	Hs.443861	NM_003137	HPRD:15992	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_57674	chr2	198678010	198678162	+	19.31165	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	8660	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1441	chr1	23504188	23504411	+	19.31165	NA	Intergenic	CpG	-8948	NM_033631	7798	Hs.257900	NM_033631	HPRD:03250	LUZP1	LUZP	leucine zipper protein 1	protein-coding
19-PTNLD28-TUMOR_peak_36868	chr16	23812795	23812965	+	19.31165	NA	Intergenic	Intergenic	-34420	NM_002738	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_109775	chrX	150321630	150321771	+	19.31165	NA	Intergenic	Intergenic	-14994	NR_036256	100422930		NR_036256	miRBase:MI0015902	MIR4330	-	microRNA 4330	ncRNA
19-PTNLD28-TUMOR_peak_67520	chr3	37011540	37011727	+	19.31165	NA	Intergenic	Intergenic	23162	NM_014805	9852	Hs.28020	NM_014805	HPRD:07445	EPM2AIP1	-	EPM2A (laforin) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63378	chr21	37021506	37021743	+	19.31165	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-68562	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_31807	chr14	94199568	94199762	+	19.31165	NA	intron (NM_178013, intron 4 of 4)	intron (NM_178013, intron 4 of 4)	55101	NM_178013	145270	Hs.432401	NM_178004	HPRD:17907	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
19-PTNLD28-TUMOR_peak_4040	chr1	64090783	64090895	+	19.31165	NA	intron (NM_001172818, intron 1 of 10)	intron (NM_001172818, intron 1 of 10)	1952	NM_001172818	5236	Hs.1869	NM_002633	HPRD:01389	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
19-PTNLD28-TUMOR_peak_59653	chr20	5081402	5081604	+	19.31165	NA	exon (NM_014145, exon 4 of 4)	exon (NM_014145, exon 4 of 4)	12230	NM_014145	29058	Hs.472024	NM_014145	HPRD:12762	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
19-PTNLD28-TUMOR_peak_12141	chr10	14579049	14579207	+	19.31165	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	35060	NM_001282699	83641	Hs.446315	NM_031453	HPRD:12575	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
19-PTNLD28-TUMOR_peak_105037	chr9	103855955	103856137	+	19.31165	NA	intron (NM_207299, intron 1 of 7)	intron (NM_207299, intron 1 of 7)	65015	NM_207299	54886	Hs.382683	NM_017753	HPRD:17906	LPPR1	PRG-3	lipid phosphate phosphatase-related protein type 1	protein-coding
19-PTNLD28-TUMOR_peak_88598	chr6	86113465	86113599	+	19.31165	NA	Intergenic	Intergenic	-45770	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_33336	chr15	43733126	43733380	+	19.31165	NA	intron (NM_001141979, intron 15 of 27)	intron (NM_001141979, intron 15 of 27)	52101	NM_001141980	7158	Hs.440968	NM_005657	HPRD:05569	TP53BP1	53BP1|p202	tumor protein p53 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109033	chrX	103217101	103217261	+	19.31165	NA	promoter-TSS (NM_194324)	promoter-TSS (NM_194324)	-19	NM_194324	286527	Hs.56145	NM_194324	HPRD:17546	TMSB15B	Tbeta15b	thymosin beta 15B	protein-coding
19-PTNLD28-TUMOR_peak_12381	chr10	23336731	23336891	+	19.31165	NA	Intergenic	Intergenic	-47616	NM_012228	22921	Hs.461420	NM_012228	HPRD:17606	MSRB2	CBS-1|CBS1|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
19-PTNLD28-TUMOR_peak_77950	chr4	167370711	167370822	+	19.31165	NA	Intergenic	L1HS|LINE|L1	576356	NM_012464	7092	Hs.106513	NM_012464	HPRD:07074	TLL1	ASD6|TLL	tolloid-like 1	protein-coding
19-PTNLD28-TUMOR_peak_65659	chr22	41397839	41398069	+	19.31165	NA	Intergenic	Intergenic	50603	NM_014248	9978	Hs.474949	NM_014248		RBX1	BA554C12.1|RNF75|ROC1	ring-box 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_93702	chr7	82440111	82440222	+	19.31165	NA	intron (NM_033026, intron 20 of 24)	intron (NM_033026, intron 20 of 24)	352031	NM_014510	27445	Hs.12376	NM_014510	HPRD:16078	PCLO	ACZ	piccolo presynaptic cytomatrix protein	protein-coding
19-PTNLD28-TUMOR_peak_99573	chr8	96110069	96110289	+	19.31165	NA	Intergenic	Intergenic	-24955	NR_037484	100500907		NR_037484	miRBase:MI0016426	MIR3150B	-	microRNA 3150b	ncRNA
19-PTNLD28-TUMOR_peak_58128	chr2	209849524	209849749	+	19.31165	NA	Intergenic	MIR|SINE|MIR	-439135	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_30655	chr14	61905728	61906062	+	19.31165	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	117734	NM_006255	5583	Hs.333907	NM_006255	HPRD:05669	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C, eta	protein-coding
19-PTNLD28-TUMOR_peak_34820	chr15	81784848	81784984	+	19.31165	NA	Intergenic	Intergenic	-118498	NM_001080532	342125	Hs.253489	NM_001080532		TMC3	-	transmembrane channel-like 3	protein-coding
19-PTNLD28-TUMOR_peak_53627	chr2	75867790	75867927	+	19.31165	NA	Intergenic	Intergenic	-6051	NM_014763	9801	Hs.44024	NM_014763		MRPL19	L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15	mitochondrial ribosomal protein L19	protein-coding
19-PTNLD28-TUMOR_peak_70477	chr3	126050487	126050603	+	19.31165	NA	Intergenic	L1PA2|LINE|L1	25691	NM_014079	28999	Hs.272215	NM_014079	HPRD:07568	KLF15	KKLF	Kruppel-like factor 15	protein-coding
19-PTNLD28-TUMOR_peak_72318	chr3	171035075	171035197	+	19.31165	NA	intron (NM_001161565, intron 2 of 30)	intron (NM_001161565, intron 2 of 30)	143061	NM_001161564	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_43271	chr17	71470515	71470695	+	19.31165	NA	intron (NM_001144952, intron 2 of 44)	intron (NM_001144952, intron 2 of 44)	-162462	NM_012121	23580	Hs.3903	NM_012121	HPRD:08383	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
19-PTNLD28-TUMOR_peak_31917	chr14	97050650	97050849	+	19.31165	NA	Intergenic	Intergenic	81547	NM_001293628	10914	Hs.253726	NM_032632	HPRD:10407	PAPOLA	PAP	poly(A) polymerase alpha	protein-coding
19-PTNLD28-TUMOR_peak_109129	chrX	108356980	108357093	+	19.31165	NA	Intergenic	L1PA2|LINE|L1	368249	NM_001522	2986	Hs.123074	NM_001522	HPRD:02078	GUCY2F	CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2	guanylate cyclase 2F, retinal	protein-coding
19-PTNLD28-TUMOR_peak_29997	chr14	39433939	39434106	+	19.31165	NA	Intergenic	Intergenic	-47936	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
19-PTNLD28-TUMOR_peak_79974	chr5	55717928	55718196	+	19.31165	NA	Intergenic	MIR3|SINE|MIR	59534	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_91246	chr7	7505185	7505314	+	19.31165	NA	intron (NM_001037763, intron 15 of 34)	L1HS|LINE|L1	70211	NM_001037763	340267	Hs.491104	NM_001037763	ENSG00000215018	COL28A1	COL28	collagen, type XXVIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_15182	chr10	100900902	100901147	+	19.31165	NA	intron (NM_001166246, intron 3 of 12)	intron (NM_001166246, intron 3 of 12)	94608	NM_001166244	60495	Hs.500750	NM_021828		HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2 (inactive)	protein-coding
19-PTNLD28-TUMOR_peak_30474	chr14	56405054	56405214	+	19.31165	NA	Intergenic	Intergenic	-141742	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
19-PTNLD28-TUMOR_peak_9845	chr1	208305454	208305861	+	19.31165	NA	intron (NM_025179, intron 4 of 31)	intron (NM_025179, intron 4 of 31)	112008	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_30641	chr14	61612085	61612386	+	19.30991	NA	Intergenic	Intergenic	136295	NM_001017970	161291	Hs.146180	NM_001017970	HPRD:18567	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
19-PTNLD28-TUMOR_peak_72301	chr3	170773254	170773429	+	19.30991	NA	Intergenic	Intergenic	-28573	NM_000340	6514	Hs.167584	NM_000340	HPRD:00685	SLC2A2	GLUT2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_19176	chr11	64530343	64530845	+	19.30928	NA	Intergenic	Intergenic	-2407	NM_001164716	5837	Hs.154084	NM_005609	HPRD:01986	PYGM	-	phosphorylase, glycogen, muscle	protein-coding
19-PTNLD28-TUMOR_peak_57729	chr2	201171194	201171971	+	19.30928	NA	5' UTR (NM_001100423, exon 1 of 13)	5' UTR (NM_001100423, exon 1 of 13)	226	NM_001100423	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_9224	chr1	201444328	201444585	+	19.30673	NA	Intergenic	Intergenic	-6157	NM_012396	23612	Hs.268557	NM_012396	HPRD:09519	PHLDA3	TIH1	pleckstrin homology-like domain, family A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_64293	chr22	18755707	18755859	+	19.30519	NA	Intergenic	Intergenic	23691	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99774	chr8	102100107	102100344	+	19.29795	NA	Intergenic	Intergenic	35943	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
19-PTNLD28-TUMOR_peak_94035	chr7	95174400	95174574	+	19.29795	NA	Intergenic	Intergenic	51438	NM_002612	5166	Hs.8364	NM_002612	HPRD:03957	PDK4	-	pyruvate dehydrogenase kinase, isozyme 4	protein-coding
19-PTNLD28-TUMOR_peak_26897	chr12	123591654	123591826	+	19.29795	NA	intron (NM_001300801, intron 1 of 24)	intron (NM_001300801, intron 1 of 24)	3235	NM_020845	57605	Hs.272759	NM_020845	HPRD:08335	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding
19-PTNLD28-TUMOR_peak_41379	chr17	38518969	38519151	+	19.29795	NA	3' UTR (NM_152219, exon 1 of 1)	3' UTR (NM_152219, exon 1 of 1)	1885	NM_152219	125111	Hs.444663	NM_152219		GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein, delta 3, 31.9kDa	protein-coding
19-PTNLD28-TUMOR_peak_49602	chr19	47917801	47917981	+	19.29795	NA	intron (NM_001301059, intron 6 of 12)	intron (NM_001301059, intron 6 of 12)	4894	NM_001301059	56917	Hs.380923	NM_020160	HPRD:14386	MEIS3	MRG2	Meis homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_51808	chr2	28454307	28454488	+	19.29795	NA	intron (NM_199193, intron 8 of 13)	intron (NM_199193, intron 8 of 13)	-24569	NR_120504	100505736	Hs.659540	NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
19-PTNLD28-TUMOR_peak_87903	chr6	49764632	49764834	+	19.29795	NA	Intergenic	L1PA3|LINE|L1	-9680	NM_138733	5232	Hs.367727	NM_138733	HPRD:01393	PGK2	HEL-S-272|PGKB|PGKPS|dJ417L20.2	phosphoglycerate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_65470	chr22	38430642	38430866	+	19.29795	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	-22508	NM_001039583	9463	Hs.180871	NM_012407	HPRD:16176	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
19-PTNLD28-TUMOR_peak_43776	chr17	76704667	76704847	+	19.29795	NA	intron (NM_001292019, intron 2 of 12)	intron (NM_001292019, intron 2 of 12)	8357	NM_001292019	9267	Hs.191215	NM_004762	HPRD:01630	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
19-PTNLD28-TUMOR_peak_41932	chr17	45307169	45307419	+	19.28839	NA	Intergenic	Intergenic	20580	NM_002476	4635	Hs.463300	NM_002476	HPRD:01176	MYL4	ALC1|AMLC|GT1	myosin, light chain 4, alkali; atrial, embryonic	protein-coding
19-PTNLD28-TUMOR_peak_102792	chr9	34552628	34552836	+	19.28839	NA	exon (NM_001842, exon 7 of 9)	exon (NM_001842, exon 7 of 9)	-15278	NR_024369	415056	Hs.734229	NR_024369		CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15411	chr10	105211795	105212246	+	19.28839	NA	non-coding (NR_024552, exon 1 of 4)	non-coding (NR_024552, exon 1 of 4)	142	NR_024552	51063	Hs.241545	NM_015916	HPRD:13301	CALHM2	FAM26B	calcium homeostasis modulator 2	protein-coding
19-PTNLD28-TUMOR_peak_18866	chr11	61255841	61256584	+	19.28549	NA	intron (NM_145017, intron 11 of 13)	L2b|LINE|L2	7627	NM_001170753	220004	Hs.729003	NM_145017	HPRD:16933	PPP1R32	C11orf66|IIIG9	protein phosphatase 1, regulatory subunit 32	protein-coding
19-PTNLD28-TUMOR_peak_109925	chrX	153236612	153236850	+	19.27625	NA	promoter-TSS (NM_005334)	promoter-TSS (NM_005334)	88	NM_005334	3054	Hs.83634	NM_005334	HPRD:02061	HCFC1	CFF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF	host cell factor C1	protein-coding
19-PTNLD28-TUMOR_peak_74127	chr4	5814755	5814912	+	19.27582	NA	3' UTR (NM_153717, exon 21 of 21)	3' UTR (NM_153717, exon 21 of 21)	74707	NM_001288662	1400	Hs.135270	NM_001313	HPRD:03913	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
19-PTNLD28-TUMOR_peak_17109	chr11	10676406	10676703	+	19.27582	NA	intron (NM_001206880, intron 1 of 19)	intron (NM_001206880, intron 1 of 19)	-2706	NM_001098579	10335	Hs.501898	NM_130385	HPRD:05242	MRVI1	IRAG|JAW1L	murine retrovirus integration site 1 homolog	protein-coding
19-PTNLD28-TUMOR_peak_27011	chr12	125238237	125238392	+	19.27205	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	110205	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_65202	chr22	33002279	33002470	+	19.26993	NA	intron (NM_001135774, intron 6 of 13)	intron (NM_001135774, intron 6 of 13)	131150	NM_001033024	25793	Hs.5912	NM_012179	HPRD:07292	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
19-PTNLD28-TUMOR_peak_75399	chr4	56707914	56708439	+	19.26993	NA	Intergenic	L1PA3|LINE|L1	-11640	NM_001024924	55763	Hs.269665	NM_018261	HPRD:07615	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
19-PTNLD28-TUMOR_peak_15841	chr10	118534343	118534639	+	19.26993	NA	Intergenic	Intergenic	-32406	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
19-PTNLD28-TUMOR_peak_101832	chr8	146246753	146247094	+	19.26993	NA	Intergenic	LTR5A|LTR|ERVK	-18638	NR_023392	286101	Hs.367856	NR_023392		ZNF252P	ZNF252	zinc finger protein 252, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80824	chr5	76578409	76578645	+	19.26993	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	71821	NM_001029852	8622	Hs.584830	NM_003719	HPRD:04546	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
19-PTNLD28-TUMOR_peak_73297	chr3	193118169	193118571	+	19.26993	NA	Intergenic	Intergenic	-21856	NM_198505	344905	Hs.658032	NM_198505	HPRD:18597	ATP13A5	-	ATPase type 13A5	protein-coding
19-PTNLD28-TUMOR_peak_38990	chr16	81756809	81756993	+	19.26993	NA	Intergenic	MER91B|DNA|hAT-Tip100	-55962	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_23209	chr12	14480754	14480923	+	19.26993	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-37728	NM_018179	55729	Hs.504856	NM_018179	HPRD:09811	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_47528	chr19	13509905	13510178	+	19.26993	NA	intron (NM_001174080, intron 3 of 46)	intron (NM_001174080, intron 3 of 46)	107233	NM_001127222	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_21508	chr11	118486056	118486318	+	19.26578	NA	intron (NM_001144759, intron 3 of 20)	intron (NM_001144759, intron 3 of 20)	7881	NM_001144758	23187	Hs.504062	NM_015157	HPRD:15128	PHLDB1	LL5A	pleckstrin homology-like domain, family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_73495	chr3	195428269	195428480	+	19.25775	NA	intron (NR_122105, intron 2 of 4)	intron (NR_122105, intron 2 of 4)	2102	NR_030296	693155		NR_030296	miRBase:MI0003577	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
19-PTNLD28-TUMOR_peak_65764	chr22	43045474	43045857	+	19.25059	NA	promoter-TSS (NM_000398)	promoter-TSS (NM_000398)	-260	NM_000398	1727	Hs.561064	NM_000398	HPRD:08942	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
19-PTNLD28-TUMOR_peak_84818	chr6	2818269	2818497	+	19.25059	NA	Intergenic	Intergenic	23900	NR_073111	1992	Hs.381167	NM_030666	HPRD:00555	SERPINB1	EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin peptidase inhibitor, clade B (ovalbumin), member 1	protein-coding
19-PTNLD28-TUMOR_peak_78604	chr5	671831	672208	+	19.24807	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	21491	NM_007030	11076	Hs.481466	NM_007030	HPRD:18522	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
19-PTNLD28-TUMOR_peak_84788	chr6	2449091	2449280	+	19.24777	NA	Intergenic	Intergenic	186113	NM_152554	154386	Hs.680574	NM_152554		C6orf195	bA145H9.2	chromosome 6 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_96070	chr7	143434194	143434370	+	19.24777	NA	Intergenic	Intergenic	20561	NM_178561	340307	Hs.676333	NM_178561	ENSG00000271321	CTAGE6	CTAGE6P	CTAGE family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_73814	chr4	1261613	1261991	+	19.24777	NA	Intergenic	LTR13|LTR|ERVK	18574	NR_033339	92070	Hs.561314	NM_052861		CTBP1-AS2	C4orf42|CTBP1-AS1	CTBP1 antisense RNA 2 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_1149	chr1	17417834	17418064	+	19.24777	NA	intron (NM_007365, intron 6 of 15)	L2b|LINE|L2	27999	NM_007365	11240	Hs.33455	NM_007365	HPRD:06396	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase, type II	protein-coding
19-PTNLD28-TUMOR_peak_3637	chr1	54789144	54789412	+	19.24777	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	82790	NM_001009955	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_65623	chr22	40766395	40766737	+	19.24777	NA	promoter-TSS (NM_015705)	promoter-TSS (NM_015705)	-29	NM_015705	27352	Hs.474914	NM_015705	HPRD:15285	SGSM3	MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5	small G protein signaling modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_66536	chr3	10412208	10412388	+	19.23859	NA	intron (NM_001001331, intron 12 of 22)	intron (NM_001001331, intron 12 of 22)	23948	NR_030614	100126334		NR_030614		MIR885	MIRN885|hsa-mir-885	microRNA 885	ncRNA
19-PTNLD28-TUMOR_peak_12545	chr10	26892285	26892465	+	19.23859	NA	Intergenic	MER44B|DNA|TcMar-Tigger	13581	NR_026793	645528	Hs.634511	NR_026793	ENSG00000233261	LINC00264	C10orf50|NCRNA00264|bA128B16.2	long intergenic non-protein coding RNA 264	ncRNA
19-PTNLD28-TUMOR_peak_69270	chr3	88080916	88081219	+	19.23859	NA	Intergenic	Intergenic	27079	NM_001008390	8545	Hs.444818	NM_003663	HPRD:04529	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_92415	chr7	47232702	47232905	+	19.23859	NA	Intergenic	Intergenic	388939	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_100170	chr8	116507081	116507333	+	19.23859	NA	intron (NM_001282902, intron 4 of 5)	intron (NM_001282902, intron 4 of 5)	173032	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_99520	chr8	94869871	94870117	+	19.23859	NA	Intergenic	Intergenic	58353	NR_039602	100616169		NR_039602	miRBase:MI0003840	MIR378D2	-	microRNA 378d-2	ncRNA
19-PTNLD28-TUMOR_peak_73944	chr4	2970275	2970470	+	19.23796	NA	intron (NM_005307, intron 1 of 13)	L2a|LINE|L2	5029	NM_001004056	2868	Hs.32959	NM_005307	HPRD:00656	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_23964	chr12	46941793	46942047	+	19.23542	NA	intron (NR_125380, intron 3 of 3)	intron (NR_125380, intron 3 of 3)	164030	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_103170	chr9	41466613	41466820	+	19.23542	NA	Intergenic	Intergenic	-33963	NM_015667	26165	Hs.123004	NM_015667	HPRD:12954	SPATA31A7	C9orf36A|FAM75A4|FAM75A7|SPATA31A4	SPATA31 subfamily A, member 7	protein-coding
19-PTNLD28-TUMOR_peak_74113	chr4	5497851	5498024	+	19.23542	NA	intron (NM_018401, intron 11 of 11)	L1PA3|LINE|L1	-28946	NM_005750	10141	Hs.177972	NM_005750	HPRD:12826	C4orf6	aC1	chromosome 4 open reading frame 6	protein-coding
19-PTNLD28-TUMOR_peak_91707	chr7	26092444	26092631	+	19.23542	NA	Intergenic	Intergenic	-99310	NM_004289	9603	Hs.404741	NM_004289	HPRD:09162	NFE2L3	NRF3	nuclear factor, erythroid 2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_45876	chr18	54821545	54822009	+	19.23413	NA	Intergenic	UCON10|Unknown|Unknown	7484	NM_001257964	284257	Hs.127882	NM_001257964	ENSG00000228075	BOD1L2	BOD1P|FAM44C	biorientation of chromosomes in cell division 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_95404	chr7	131769743	131769890	+	19.23413	NA	Intergenic	MER51A|LTR|ERV1	174837	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_28797	chr13	99218139	99218337	+	19.23413	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	11167	NM_001032296	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_31868	chr14	95721966	95722136	+	19.23413	NA	intron (NM_024734, intron 1 of 12)	Tigger9b|DNA|TcMar-Tigger	64194	NM_024734	79789	Hs.301478	NM_024734	HPRD:13076	CLMN	-	calmin (calponin-like, transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_65951	chr22	46315465	46315664	+	19.22914	NA	TTS (NM_058238)	TTS (NM_058238)	57444	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_93228	chr7	73352134	73352288	+	19.22914	NA	Intergenic	AluJo|SINE|Alu	76722	NM_182504	135886	Hs.647026	NM_182504	HPRD:15662	WBSCR28	-	Williams-Beuren syndrome chromosome region 28	protein-coding
19-PTNLD28-TUMOR_peak_29468	chr14	23322317	23322873	+	19.22914	NA	Intergenic	Intergenic	16853	NM_004995	4323	Hs.2399	NM_004995	HPRD:02856	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_46904	chr19	6378163	6378350	+	19.22914	NA	Intergenic	Intergenic	-2396	NM_004158	5623	Hs.248159	NM_004158	HPRD:04230	PSPN	PSP	persephin	protein-coding
19-PTNLD28-TUMOR_peak_61852	chr20	49327234	49327436	+	19.22244	NA	Intergenic	AluJo|SINE|Alu	-19268	NM_001290268	140876	Hs.372578	NM_080829	HPRD:12757	FAM65C	C20orf175|C20orf176|dJ530I15.2|dJ530I15.3	family with sequence similarity 65, member C	protein-coding
19-PTNLD28-TUMOR_peak_54789	chr2	109825997	109826204	+	19.22195	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-68056	NR_036223	100422863		NR_036223	miRBase:MI0015869	MIR4265	-	microRNA 4265	ncRNA
19-PTNLD28-TUMOR_peak_68114	chr3	49389294	49389529	+	19.22195	NA	Intergenic	Intergenic	6380	NM_201397	2876	Hs.76686	NM_000581	HPRD:11749	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_60817	chr20	35243204	35243437	+	19.22195	NA	intron (NM_032214, intron 6 of 7)	intron (NM_032214, intron 6 of 7)	9183	NR_026562	55969	Hs.584985	NM_018840	HPRD:12761	C20orf24	RIP5	chromosome 20 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_108175	chrX	47225521	47225980	+	19.21505	NA	Intergenic	Intergenic	-4249	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_60993	chr20	37522424	37522699	+	19.21092	NA	intron (NM_015568, intron 3 of 10)	intron (NM_015568, intron 3 of 10)	-32394	NM_030919	81610	Hs.726442	NM_030919	HPRD:12744	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83, member D	protein-coding
19-PTNLD28-TUMOR_peak_64111	chr21	47573124	47573558	+	19.21092	NA	intron (NM_006657, intron 2 of 14)	intron (NM_006657, intron 2 of 14)	2140	NM_006657	10841	Hs.415846	NM_006657	HPRD:08430	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
19-PTNLD28-TUMOR_peak_86302	chr6	28219425	28220194	+	19.21092	NA	5' UTR (NM_019110, exon 1 of 5)	5' UTR (NM_019110, exon 1 of 5)	193	NM_019110	387032	Hs.44720	NM_019110	HPRD:15768	ZKSCAN4	P1P373C6|ZNF307|ZNF427|ZSCAN36|p373c6.1	zinc finger with KRAB and SCAN domains 4	protein-coding
19-PTNLD28-TUMOR_peak_95898	chr7	141401345	141401652	+	19.20696	NA	intron (NM_001080392, intron 1 of 8)	CpG	455	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
19-PTNLD28-TUMOR_peak_88198	chr6	64928171	64928414	+	19.20008	NA	intron (NM_001292009, intron 31 of 43)	MER67B|LTR|ERV1	571861	NM_015153	23469	Hs.348921	NM_015153	HPRD:08477	PHF3	-	PHD finger protein 3	protein-coding
19-PTNLD28-TUMOR_peak_29030	chr13	110396140	110396429	+	19.20008	NA	Intergenic	Intergenic	15663	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
19-PTNLD28-TUMOR_peak_42826	chr17	61678099	61678440	+	19.20008	NA	promoter-TSS (NM_016360)	promoter-TSS (NM_016360)	38	NM_016360	51204	Hs.174134	NM_016360	HPRD:17421	TACO1	CCDC44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding
19-PTNLD28-TUMOR_peak_84820	chr6	2831743	2831910	+	19.20008	NA	TTS (NM_030666)	TTS (NM_030666)	10457	NR_073111	1992	Hs.381167	NM_030666	HPRD:00555	SERPINB1	EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin peptidase inhibitor, clade B (ovalbumin), member 1	protein-coding
19-PTNLD28-TUMOR_peak_65466	chr22	38329959	38330216	+	19.20008	NA	intron (NM_033386, intron 13 of 15)	intron (NM_033386, intron 13 of 15)	19567	NM_032561	84645	Hs.517612	NM_032561	HPRD:12799	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
19-PTNLD28-TUMOR_peak_22515	chr12	3091429	3091867	+	19.20008	NA	intron (NM_201443, intron 1 of 10)	intron (NM_201443, intron 1 of 10)	22900	NM_201443	7004	Hs.94865	NM_003213	HPRD:03421	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_75818	chr4	78014318	78014512	+	19.20008	NA	Intergenic	MER72|LTR|ERV1	-17290	NM_006835	10983	Hs.518827	NM_006835	HPRD:16690	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
19-PTNLD28-TUMOR_peak_29845	chr14	34608884	34609550	+	19.20008	NA	Intergenic	L1PA7|LINE|L1	-188933	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_66694	chr3	12838469	12838624	+	19.19669	NA	intron (NM_001162499, intron 1 of 14)	CpG	375	NM_001162499	23066	Hs.343664	NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_93927	chr7	92157027	92157286	+	19.18857	NA	promoter-TSS (NM_032120)	promoter-TSS (NM_032120)	689	NM_001282678	5189	Hs.164682	NM_000466	HPRD:03682	PEX1	PBD1A|PBD1B|ZWS|ZWS1	peroxisomal biogenesis factor 1	protein-coding
19-PTNLD28-TUMOR_peak_26776	chr12	122203597	122203723	+	19.18778	NA	intron (NM_001080825, intron 6 of 11)	intron (NM_001080825, intron 6 of 11)	27934	NM_019034	54509	Hs.644504	NM_019034	HPRD:15246	RHOF	ARHF|RIF	ras homolog family member F (in filopodia)	protein-coding
19-PTNLD28-TUMOR_peak_95362	chr7	131207377	131207770	+	19.18759	NA	intron (NM_001018111, intron 1 of 8)	L1MB8|LINE|L1	33803	NM_005397	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_87584	chr6	43422192	43422539	+	19.18215	NA	intron (NM_023932, intron 2 of 5)	intron (NM_023932, intron 2 of 5)	997	NM_023932	65989	Hs.337251	NM_023932	HPRD:16855	DLK2	DLK-2|EGFL9	delta-like 2 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_19957	chr11	73363409	73363641	+	19.17791	NA	intron (NM_001130034, intron 4 of 7)	intron (NM_001130034, intron 4 of 7)	3790	NM_001130036	58473	Hs.445489	NM_021200	HPRD:09630	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding
19-PTNLD28-TUMOR_peak_51171	chr2	11894354	11894580	+	19.17374	NA	intron (NM_145693, intron 1 of 19)	intron (NM_145693, intron 1 of 19)	7745	NM_145693	23175	Hs.467740	NM_145693	HPRD:09271	LPIN1	PAP1	lipin 1	protein-coding
19-PTNLD28-TUMOR_peak_22177	chr11	130319984	130320278	+	19.17374	NA	intron (NM_139055, intron 1 of 7)	CpG	1262	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_79217	chr5	21494434	21494633	+	19.17121	NA	intron (NR_027028, intron 4 of 5)	intron (NR_027028, intron 4 of 5)	34944	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_8392	chr1	176850208	176850368	+	19.17092	NA	intron (NM_001286164, intron 20 of 22)	intron (NM_001286164, intron 20 of 22)	148293	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	ncRNA
19-PTNLD28-TUMOR_peak_61639	chr20	47625836	47626038	+	19.17092	NA	intron (NM_006420, intron 26 of 38)	AluSz6|SINE|Alu	36656	NR_110624	102723483	Hs.209000	NR_110624		CSE1L-AS1	-	CSE1L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89759	chr6	143077427	143077753	+	19.17092	NA	intron (NM_006734, intron 9 of 9)	ERV3-16A3_LTR|LTR|ERVL	-118564	NR_027312	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
19-PTNLD28-TUMOR_peak_10981	chr1	234622667	234622962	+	19.17092	NA	Intergenic	Intergenic	-7965	NM_005646	6894	Hs.498115	NM_005646	HPRD:05445	TARBP1	TRM3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_71207	chr3	138865784	138865900	+	19.17092	NA	Intergenic	L1PA3|LINE|L1	42815	NR_026783	60467	Hs.512673	NM_021812	HPRD:16559	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_59519	chr20	2748792	2749261	+	19.17092	NA	Intergenic	Intergenic	32266	NM_019609	56265	Hs.659346	NM_019609	HPRD:07099	CPXM1	CPX1|CPXM	carboxypeptidase X (M14 family), member 1	protein-coding
19-PTNLD28-TUMOR_peak_76316	chr4	96097789	96097915	+	19.17092	NA	intron (NM_003728, intron 14 of 15)	L1PA3|LINE|L1	85210	NM_001256794	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_40010	chr17	7712565	7713027	+	19.17092	NA	intron (NM_020877, intron 62 of 84)	intron (NM_020877, intron 62 of 84)	-30439	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
19-PTNLD28-TUMOR_peak_24056	chr12	48512923	48513131	+	19.17092	NA	promoter-TSS (NM_000289)	promoter-TSS (NM_000289)	14	NM_000289	5213	Hs.75160	NM_000289	HPRD:01988	PFKM	ATP-PFK|GSD7|PFK-1|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
19-PTNLD28-TUMOR_peak_83070	chr5	148329715	148330048	+	19.17092	NA	Intergenic	Intergenic	112856	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_44846	chr18	20254349	20254519	+	19.17092	NA	Intergenic	Intergenic	112366	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_21169	chr11	112090593	112090731	+	19.17092	NA	Intergenic	Intergenic	-6426	NM_000317	5805	Hs.503860	NM_000317	HPRD:11840	PTS	PTPS	6-pyruvoyltetrahydropterin synthase	protein-coding
19-PTNLD28-TUMOR_peak_31526	chr14	81860060	81860274	+	19.17092	NA	intron (NM_001256430, intron 4 of 7)	intron (NM_001256430, intron 4 of 7)	33389	NM_033104	85439	Hs.14248	NM_033104	HPRD:10531	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
19-PTNLD28-TUMOR_peak_108143	chrX	46651449	46651647	+	19.17092	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-32941	NM_001257291	84679	Hs.91389	NM_032591		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
19-PTNLD28-TUMOR_peak_78950	chr5	11851582	11851766	+	19.17092	NA	intron (NM_001288717, intron 1 of 20)	intron (NM_001288717, intron 1 of 20)	52481	NR_109988	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_80900	chr5	78993732	78993839	+	19.17040	NA	intron (NM_153610, intron 1 of 12)	intron (NM_153610, intron 1 of 12)	8126	NM_153610	202333	Hs.482625	NM_153610	HPRD:16728	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
19-PTNLD28-TUMOR_peak_22812	chr12	6936687	6936824	+	19.16746	NA	promoter-TSS (NM_014262)	promoter-TSS (NM_014262)	-783	NM_014262	10536	Hs.631655	NM_014262	HPRD:10039	LEPREL2	GRCB|HSU47926|P3H3	leprecan-like 2	protein-coding
19-PTNLD28-TUMOR_peak_83820	chr5	169404223	169404449	+	19.15245	NA	intron (NM_001129891, intron 1 of 3)	intron (NM_001129891, intron 1 of 3)	3408	NM_001129891	100131897	Hs.721917	NM_001129891	ENSG00000204767	FAM196B	C5orf57	family with sequence similarity 196, member B	protein-coding
19-PTNLD28-TUMOR_peak_29647	chr14	25602069	25602267	+	19.15008	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-83073	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_22362	chr12	371965	372300	+	19.15008	NA	promoter-TSS (NM_016615)	promoter-TSS (NM_016615)	-93	NM_016615	6540	Hs.504398	NM_016615	HPRD:10239	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 (neurotransmitter transporter), member 13	protein-coding
19-PTNLD28-TUMOR_peak_62952	chr21	26313996	26314224	+	19.15008	NA	intron (NR_046198, intron 2 of 3)	MER74A|LTR|ERVL	101246	NR_046198	339622	Hs.616316	NR_046198	ENSG00000226983	LOC339622	-	uncharacterized LOC339622	ncRNA
19-PTNLD28-TUMOR_peak_65180	chr22	32373270	32373413	+	19.14296	NA	Intergenic	Intergenic	-32005	NM_015372	25775	Hs.627602	NM_015372	ENSG00000128254	C22orf24	HSN44A4A	chromosome 22 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_78731	chr5	4502203	4502437	+	19.14296	NA	Intergenic	L1HS|LINE|L1	-271274	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_102797	chr9	34603776	34603920	+	19.14296	NA	Intergenic	Intergenic	8262	NM_148178	138716	Hs.15961	NM_148178	HPRD:12948	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP 25kDa subunit-like	protein-coding
19-PTNLD28-TUMOR_peak_3933	chr1	61635939	61636253	+	19.14296	NA	intron (NM_001145511, intron 2 of 10)	intron (NM_001145511, intron 2 of 10)	83094	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42349	chr17	51539739	51540002	+	19.14296	NA	Intergenic	Intergenic	-360369	NM_032559	84643	Hs.226805	NM_032559	HPRD:10053	KIF2B	-	kinesin family member 2B	protein-coding
19-PTNLD28-TUMOR_peak_38740	chr16	75233357	75233512	+	19.14296	NA	Intergenic	Intergenic	7638	NM_001025200	440387	Hs.632211	NM_001025200	ENSG00000168928	CTRB2	-	chymotrypsinogen B2	protein-coding
19-PTNLD28-TUMOR_peak_9857	chr1	208483049	208483459	+	19.14296	NA	Intergenic	Intergenic	-65589	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_75559	chr4	67991855	67992152	+	19.14296	NA	Intergenic	MER44B|DNA|TcMar-Tigger	295715	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_33324	chr15	43511635	43511796	+	19.14296	NA	intron (NM_001114134, intron 1 of 12)	intron (NM_001114134, intron 1 of 12)	1608	NM_001114134	2038	Hs.368642	NM_000119	HPRD:01517	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
19-PTNLD28-TUMOR_peak_35525	chr15	101708391	101708680	+	19.14296	NA	Intergenic	Intergenic	83602	NM_014918	22856	Hs.110488	NM_014918	HPRD:10493	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_30216	chr14	50787865	50788047	+	19.14296	NA	intron (NR_033761, intron 2 of 5)	intron (NR_033761, intron 2 of 5)	8909	NR_033761	27109	Hs.438489	NM_015684	HPRD:12503	ATP5S	ATPW|FB|HSU79253	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)	protein-coding
19-PTNLD28-TUMOR_peak_89823	chr6	145693766	145694220	+	19.14296	NA	Intergenic	MER57C2|LTR|ERV1	-362012	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
19-PTNLD28-TUMOR_peak_14694	chr10	86865429	86865716	+	19.14296	NA	Intergenic	L2|LINE|L2	93089	NR_120668	101929624	Hs.588831	NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
19-PTNLD28-TUMOR_peak_72364	chr3	172023471	172023639	+	19.14296	NA	intron (NM_001135095, intron 9 of 25)	intron (NM_001135095, intron 9 of 25)	142691	NM_198407	2693	Hs.130212	NM_004122	HPRD:03541	GHSR	-	growth hormone secretagogue receptor	protein-coding
19-PTNLD28-TUMOR_peak_98411	chr8	41570442	41570779	+	19.14275	NA	intron (NM_020476, intron 16 of 41)	intron (NM_020476, intron 16 of 41)	-47806	NM_020480	286	Hs.654438	NM_000037	HPRD:01693	ANK1	ANK|SPH1|SPH2	ankyrin 1, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_76434	chr4	103422878	103423305	+	19.14275	NA	intron (NM_003998, intron 1 of 23)	CpG	605	NM_001165412	4790	Hs.618430	NM_003998	HPRD:01238	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
19-PTNLD28-TUMOR_peak_64166	chr22	16382251	16382478	+	19.13789	NA	Intergenic	Intergenic	67440	NM_001005239	81061	Hs.554706	NM_001005239		OR11H1	OR22-1	olfactory receptor, family 11, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_47344	chr19	11649462	11649846	+	19.13311	NA	promoter-TSS (NM_001299)	promoter-TSS (NM_001299)	75	NM_001299	1264	Hs.465929	NM_001299	HPRD:02884	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1, basic, smooth muscle	protein-coding
19-PTNLD28-TUMOR_peak_75819	chr4	78014633	78014814	+	19.13104	NA	Intergenic	Intergenic	-17598	NM_006835	10983	Hs.518827	NM_006835	HPRD:16690	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
19-PTNLD28-TUMOR_peak_10914	chr1	233336241	233336430	+	19.13104	NA	intron (NM_014801, intron 13 of 33)	intron (NM_014801, intron 13 of 33)	95124	NM_014801	80003	Hs.370605	NM_014801	HPRD:15108	PCNXL2	-	pecanex-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_93992	chr7	94023726	94023954	+	19.13104	NA	promoter-TSS (NM_000089)	promoter-TSS (NM_000089)	-33	NM_000089	1278	Hs.489142	NM_000089	HPRD:00363	COL1A2	OI4	collagen, type I, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_1700	chr1	26963099	26963517	+	19.13104	NA	Intergenic	MER41B|LTR|ERV1	-59214	NM_006015	8289	Hs.468972	NM_006015	HPRD:04319	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT rich interactive domain 1A (SWI-like)	protein-coding
19-PTNLD28-TUMOR_peak_35368	chr15	96888886	96889206	+	19.13104	NA	Intergenic	CpG	12477	NM_001145157	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_79368	chr5	32814831	32815065	+	19.13104	NA	Intergenic	Intergenic	103510	NM_001204375	4883	Hs.13528	NM_000908	HPRD:00167	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_64996	chr22	29724976	29725344	+	19.13104	NA	intron (NM_145730, intron 20 of 20)	intron (NM_145730, intron 20 of 20)	4087	NR_003686	100113380		NR_003686		SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
19-PTNLD28-TUMOR_peak_92866	chr7	64592793	64592946	+	19.13104	NA	Intergenic	Intergenic	94137	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_87135	chr6	36795425	36795577	+	19.10709	NA	intron (NM_020939, intron 1 of 20)	intron (NM_020939, intron 1 of 20)	11719	NM_020939	57699	Hs.657869	NM_020939	HPRD:05018	CPNE5	COPN5|CPN5	copine V	protein-coding
19-PTNLD28-TUMOR_peak_11116	chr1	235998575	235998796	+	19.10709	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	17675	NR_031718	100302139		NR_031718	miRBase:MI0007258	MIR1537	MIRN1537|hsa-mir-1537	microRNA 1537	ncRNA
19-PTNLD28-TUMOR_peak_47075	chr19	8625889	8626216	+	19.10709	NA	intron (NM_012335, intron 1 of 27)	AluJb|SINE|Alu	16279	NM_012335	4542	Hs.465818	NM_012335	HPRD:03282	MYO1F	-	myosin IF	protein-coding
19-PTNLD28-TUMOR_peak_53879	chr2	86450306	86450509	+	19.10709	NA	intron (NM_001164731, intron 5 of 5)	intron (NM_001164731, intron 5 of 5)	23851	NM_016622	51318	Hs.433439	NM_016622	HPRD:14755	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding
19-PTNLD28-TUMOR_peak_56797	chr2	167041352	167041600	+	19.09445	NA	intron (NR_110260, intron 3 of 11)	L2a|LINE|L2	-35834	NM_001202435	6323	Hs.22654	NM_006920	HPRD:01669	SCN1A	EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI	sodium channel, voltage-gated, type I, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_29182	chr13	114301836	114302264	+	19.09445	NA	Intergenic	Intergenic	10463	NM_000705	496	Hs.434202	NM_000705	HPRD:00669	ATP4B	ATP6B	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_476	chr1	8000878	8001098	+	19.09445	NA	5' UTR (NM_001561, exon 2 of 9)	5' UTR (NM_001561, exon 2 of 9)	2237	NM_001561	3604	Hs.86447	NM_001561		TNFRSF9	4-1BB|CD137|CDw137|ILA	tumor necrosis factor receptor superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_59397	chr20	633780	634280	+	19.09445	NA	promoter-TSS (NM_080725)	promoter-TSS (NM_080725)	-16	NM_080725	140809	Hs.516830	NM_080725	HPRD:12747	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
19-PTNLD28-TUMOR_peak_17079	chr11	10344581	10344765	+	19.09445	NA	intron (NR_103765, intron 1 of 3)	intron (NR_103765, intron 1 of 3)	14813	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
19-PTNLD28-TUMOR_peak_79803	chr5	50040662	50040910	+	19.09445	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	78014	NM_001178056	79668	Hs.369581	NM_024615	HPRD:07960	PARP8	ARTD16|pART16	poly (ADP-ribose) polymerase family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_89993	chr6	150836164	150836419	+	19.09445	NA	Intergenic	Intergenic	-84708	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_64800	chr22	25201956	25202427	+	19.09445	NA	promoter-TSS (NM_001098498)	promoter-TSS (NM_001098498)	55	NM_133454	129049	Hs.474397	NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_15821	chr10	117722050	117722438	+	19.09445	NA	Intergenic	Intergenic	309575	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_90560	chr6	168226409	168226639	+	19.09201	NA	non-coding (NR_027906, exon 1 of 2)	non-coding (NR_027906, exon 1 of 2)	952	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_23697	chr12	32909213	32909391	+	19.09103	NA	promoter-TSS (NM_001040436)	promoter-TSS (NM_001040436)	-415	NM_001040436	51067	Hs.505231	NM_015936	HPRD:13025	YARS2	MLASA2|MT-TYRRS|TYRRS	tyrosyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_39594	chr17	964283	964457	+	19.09103	NA	intron (NM_001282149, intron 5 of 17)	intron (NM_001282149, intron 5 of 17)	18016	NM_001282149	29	Hs.159306	NM_001092	HPRD:02649	ABR	MDB	active BCR-related	protein-coding
19-PTNLD28-TUMOR_peak_54371	chr2	98290373	98290850	+	19.08936	NA	intron (NR_038386, intron 2 of 9)	intron (NR_038386, intron 2 of 9)	4405	NR_038386	728537	Hs.469369	NR_038386	ENSG00000228486	LINC01125	-	long intergenic non-protein coding RNA 1125	ncRNA
19-PTNLD28-TUMOR_peak_31885	chr14	95974303	95974449	+	19.08936	NA	Intergenic	Intergenic	25590	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
19-PTNLD28-TUMOR_peak_30983	chr14	69273777	69274000	+	19.08936	NA	Intergenic	Intergenic	-10928	NM_001244701	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91587	chr7	22893736	22894234	+	19.08936	NA	Intergenic	CpG	-2247	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
19-PTNLD28-TUMOR_peak_74227	chr4	7076310	7076537	+	19.08851	NA	Intergenic	Intergenic	-6623	NM_025196	80273	Hs.443723	NM_025196		GRPEL1	HMGE	GrpE-like 1, mitochondrial (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_20017	chr11	74393454	74393655	+	19.08851	NA	Intergenic	Intergenic	37828	NR_039845	100616402		NR_039845		MIR4696	-	microRNA 4696	ncRNA
19-PTNLD28-TUMOR_peak_4858	chr1	92196427	92196698	+	19.08401	NA	intron (NM_001195684, intron 6 of 17)	intron (NM_001195684, intron 6 of 17)	155274	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_105127	chr9	107919427	107919793	+	19.06564	NA	Intergenic	Intergenic	-87284	NM_080546	23446	Hs.573495	NM_022109	HPRD:16197	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 (choline transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_78466	chr4	189203738	189203901	+	19.06564	NA	Intergenic	CpG	143221	NM_178556	339976	Hs.348618	NM_178556	HPRD:08774	TRIML1	RNF209	tripartite motif family-like 1	protein-coding
19-PTNLD28-TUMOR_peak_83272	chr5	150880407	150880603	+	19.06564	NA	Intergenic	Intergenic	21204	NR_106752	102465246		NR_106752		MIR6499	hsa-mir-6499	microRNA 6499	ncRNA
19-PTNLD28-TUMOR_peak_76593	chr4	111086703	111086860	+	19.06564	NA	intron (NM_001130721, intron 2 of 4)	MIRb|SINE|MIR	32990	NM_001130721	79071	Hs.412939	NM_024090	HPRD:13269	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
19-PTNLD28-TUMOR_peak_98837	chr8	55992371	55992734	+	19.06564	NA	Intergenic	LTR56|LTR|ERV1	-22465	NM_052898	114786	Hs.130197	NM_052898		XKR4	XRG4	XK, Kell blood group complex subunit-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_4768	chr1	89873070	89873418	+	19.06564	NA	promoter-TSS (NR_003133)	promoter-TSS (NR_003133)	6	NR_003133	400759	Hs.661968	NR_003133	ENSG00000225492	GBP1P1	-	guanylate binding protein 1, interferon-inducible pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_60616	chr20	32533581	32533781	+	19.06564	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-47777	NM_016732	22913	Hs.136947	NM_007367	HPRD:11480	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_97755	chr8	26101171	26101602	+	19.06564	NA	Intergenic	AluSz|SINE|Alu	-47621	NM_002717	5520	Hs.146339	NM_002717	HPRD:09223	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
19-PTNLD28-TUMOR_peak_56926	chr2	171784761	171785170	+	19.06475	NA	promoter-TSS (NM_001201428)	promoter-TSS (NM_001201428)	17	NM_001201428	26003	Hs.431317	NM_015530	HPRD:08303	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2, 55kDa	protein-coding
19-PTNLD28-TUMOR_peak_34110	chr15	67248635	67249040	+	19.06192	NA	Intergenic	Intergenic	-109358	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_63925	chr21	45567132	45567324	+	19.06192	NA	Intergenic	Intergenic	13734	NM_004649	8209	Hs.413482	NM_004649	HPRD:09044	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_8860	chr1	185318748	185319343	+	19.06192	NA	Intergenic	Intergenic	-14874	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule-associated protein 1 light chain 3 beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10021	chr1	213898359	213898864	+	19.06192	NA	Intergenic	Intergenic	-199481	NR_046189	100861504	Hs.742586	NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
19-PTNLD28-TUMOR_peak_19619	chr11	68759767	68760015	+	19.06192	NA	Intergenic	L2|LINE|L2	-11436	NM_198923	116512	Hs.527802	NM_198923	HPRD:06250	MRGPRD	MRGD|TGR7	MAS-related GPR, member D	protein-coding
19-PTNLD28-TUMOR_peak_57478	chr2	191630547	191630782	+	19.06192	NA	Intergenic	Intergenic	-114883	NM_001256310	2744	Hs.116448	NM_014905	HPRD:00700	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
19-PTNLD28-TUMOR_peak_100838	chr8	128902232	128902535	+	19.06192	NA	promoter-TSS (NR_003367)	promoter-TSS (NR_003367)	-491	NR_003367	5820	Hs.133107	NR_003367	ENSG00000249859	PVT1	LINC00079|NCRNA00079	Pvt1 oncogene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_369	chr1	6445902	6446073	+	19.06192	NA	promoter-TSS (NM_181864)	promoter-TSS (NM_181864)	-104	NM_181864	11332	Hs.126137	NM_007274	HPRD:12517	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_109726	chrX	149094651	149094814	+	19.04856	NA	Intergenic	MER11D|LTR|ERVK	11984	NM_001013845	541578	Hs.545950	NM_001013845	HPRD:18676	CXorf40B	-	chromosome X open reading frame 40B	protein-coding
19-PTNLD28-TUMOR_peak_97975	chr8	29492617	29492835	+	19.04856	NA	Intergenic	Intergenic	112899	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_5015	chr1	94947059	94947264	+	19.04856	NA	intron (NM_002858, intron 9 of 22)	MLT1L|LTR|ERVL-MaLR	60252	NM_001178096	2152	Hs.62192	NM_001993	HPRD:00603	F3	CD142|TF|TFA	coagulation factor III (thromboplastin, tissue factor)	protein-coding
19-PTNLD28-TUMOR_peak_25709	chr12	96851074	96851259	+	19.04856	NA	Intergenic	Intergenic	-56800	NM_001170464	5128	Hs.506415	NM_002595	HPRD:09141	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
19-PTNLD28-TUMOR_peak_17183	chr11	11834891	11835137	+	19.04856	NA	Intergenic	Intergenic	-27956	NM_001282659	55031	Hs.577256	NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
19-PTNLD28-TUMOR_peak_79095	chr5	16456180	16456349	+	19.04856	NA	intron (NM_033414, intron 4 of 5)	AluJb|SINE|Alu	9630	NM_033414	90441	Hs.60300	NM_033414	HPRD:12278	ZNF622	ZPR9	zinc finger protein 622	protein-coding
19-PTNLD28-TUMOR_peak_52299	chr2	40514442	40514667	+	19.04856	NA	intron (NM_001112800, intron 1 of 8)	intron (NM_001112800, intron 1 of 8)	142890	NM_001112801	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_42474	chr17	55244297	55244486	+	19.04856	NA	Intergenic	Intergenic	81256	NM_001242902	8165	Hs.463506	NM_003488	HPRD:03905	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A kinase (PRKA) anchor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21873	chr11	124832025	124832189	+	19.04856	NA	intron (NM_025004, intron 4 of 15)	intron (NM_025004, intron 4 of 15)	8090	NM_025004	80071	Hs.287555	NM_025004	HPRD:07820	CCDC15	-	coiled-coil domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_25536	chr12	89777834	89778208	+	19.04856	NA	Intergenic	Intergenic	-31385	NM_022652	1848	Hs.298654	NM_001946	HPRD:04124	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
19-PTNLD28-TUMOR_peak_66690	chr3	12795232	12795441	+	19.04778	NA	intron (NM_001284406, intron 1 of 11)	intron (NM_001284406, intron 1 of 11)	5472	NM_001284407	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_3638	chr1	54797119	54797329	+	19.04450	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	74844	NM_001009955	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_209	chr1	2145623	2145784	+	19.04326	NA	Intergenic	Intergenic	-1544	NM_001282670	199990	Hs.107101	NM_182533	HPRD:08707	C1orf86	FAAP20|FP7162	chromosome 1 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_75017	chr4	40059499	40059709	+	19.04326	NA	promoter-TSS (NR_027277)	promoter-TSS (NR_027277)	-785	NR_027277	344967	Hs.534633	NR_027277	ENSG00000205794	LOC344967	-	acyl-CoA thioesterase 7 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_27903	chr13	40318257	40318419	+	19.03883	NA	intron (NM_001145079, intron 18 of 18)	L1PA6|LINE|L1	-80066	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_63928	chr21	45592682	45593038	+	19.03717	NA	Intergenic	Intergenic	39366	NM_004649	8209	Hs.413482	NM_004649	HPRD:09044	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_74744	chr4	22516989	22517240	+	19.03717	NA	intron (NM_145290, intron 1 of 18)	CpG	563	NM_145290	166647	Hs.99195	NM_145290	HPRD:11011	GPR125	PGR21|TEM5L	G protein-coupled receptor 125	protein-coding
19-PTNLD28-TUMOR_peak_79977	chr5	55761204	55761477	+	19.03627	NA	intron (NR_104664, intron 2 of 4)	intron (NR_104664, intron 2 of 4)	16256	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_14626	chr10	82232252	82232497	+	19.03627	NA	intron (NM_030927, intron 1 of 8)	L1MC4|LINE|L1	18336	NM_001128309	81619	Hs.718943	NM_030927	HPRD:18196	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
19-PTNLD28-TUMOR_peak_68605	chr3	58472882	58473038	+	19.03627	NA	Intergenic	L2b|LINE|L2	-4863	NM_001128214	200845	Hs.13982	NM_153331	HPRD:13769	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_11688	chr10	3194155	3194505	+	19.03627	NA	intron (NM_014889, intron 14 of 26)	Tigger11a|DNA|TcMar-Tigger	10537	NR_038284	100507034	Hs.665365	NR_038284	ENSG00000237399	PITRM1-AS1	-	PITRM1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54882	chr2	111152481	111152618	+	19.03627	NA	Intergenic	Intergenic	-10436	NR_027244	151009	Hs.643369	NR_027244		LINC01106	-	long intergenic non-protein coding RNA 1106	ncRNA
19-PTNLD28-TUMOR_peak_93142	chr7	72568244	72568494	+	19.02851	NA	promoter-TSS (NR_003580)	promoter-TSS (NR_003580)	-643	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_3807	chr1	59039523	59039793	+	19.02203	NA	Intergenic	Intergenic	3508	NM_002353	4070	Hs.23582	NM_002353	HPRD:00672	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor-associated calcium signal transducer 2	protein-coding
19-PTNLD28-TUMOR_peak_87893	chr6	49509047	49509272	+	19.01919	NA	Intergenic	Intergenic	-8954	NM_001145652	135398	Hs.722010	NM_153344	HPRD:12852	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_43276	chr17	71583533	71583762	+	19.01919	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	56580	NM_001144952	54549	Hs.435719	NM_019064	HPRD:06239	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_99525	chr8	94911102	94911278	+	19.01919	NA	Intergenic	Intergenic	17157	NR_039602	100616169		NR_039602	miRBase:MI0003840	MIR378D2	-	microRNA 378d-2	ncRNA
19-PTNLD28-TUMOR_peak_94696	chr7	105691284	105691518	+	19.01919	NA	Intergenic	Intergenic	61390	NM_182715	6856	Hs.80919	NM_006754	HPRD:15459	SYPL1	H-SP1|SYPL	synaptophysin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_72247	chr3	169906995	169907159	+	19.01919	NA	Intergenic	Intergenic	-7540	NM_024947	80012	Hs.529592	NM_024947	HPRD:10149	PHC3	EDR3|HPH3	polyhomeotic homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_108763	chrX	73755703	73756121	+	19.01658	NA	Intergenic	CpG	78549	NM_183353	51132	Hs.653288	NM_016120	HPRD:02304	RLIM	NY-REN-43|RNF12	ring finger protein, LIM domain interacting	protein-coding
19-PTNLD28-TUMOR_peak_18038	chr11	35099339	35099536	+	19.01658	NA	Intergenic	Intergenic	60142	NR_120528	100507144	Hs.673491	NR_120528	ENSG00000255521	LOC100507144	-	uncharacterized LOC100507144	ncRNA
19-PTNLD28-TUMOR_peak_736	chr1	11035903	11036375	+	19.00459	NA	intron (NM_001170754, intron 2 of 12)	intron (NM_001170754, intron 2 of 12)	5955	NM_001170754	148345	Hs.127026	NM_173507	HPRD:08780	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
19-PTNLD28-TUMOR_peak_106134	chr9	129605163	129605862	+	19.00459	NA	Intergenic	AluSx1|SINE|Alu	-17432	NM_001099270	403341	Hs.177633	NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
19-PTNLD28-TUMOR_peak_5313	chr1	108997253	108997417	+	18.99702	NA	intron (NM_001143988, intron 5 of 14)	intron (NM_001143988, intron 5 of 14)	4431	NM_001143987	653149	Hs.712226	NM_001143987	ENSG00000186086	NBPF6	-	neuroblastoma breakpoint family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_43918	chr17	78916273	78916695	+	18.99353	NA	intron (NM_020761, intron 25 of 33)	intron (NM_020761, intron 25 of 33)	-49157	NM_024591	79643	Hs.514560	NM_024591	HPRD:08564	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
19-PTNLD28-TUMOR_peak_63630	chr21	42396425	42396812	+	18.99353	NA	Intergenic	Intergenic	123373	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_88443	chr6	79577033	79577688	+	18.99353	NA	promoter-TSS (NM_001010844)	promoter-TSS (NM_001010844)	99	NM_001010844	134728	Hs.656212	NM_001010844	HPRD:17157	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78757	chr5	6687286	6687457	+	18.99353	NA	intron (NR_103771, intron 2 of 2)	intron (NR_103771, intron 2 of 2)	20453	NR_103771	100505625	Hs.550028	NR_103771	ENSG00000248677	LOC100505625	-	uncharacterized LOC100505625	ncRNA
19-PTNLD28-TUMOR_peak_85780	chr6	19327677	19328223	+	18.99353	NA	Intergenic	Intergenic	-147239	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_1084	chr1	16705837	16706110	+	18.99353	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	12448	NR_073500	26099	Hs.252967	NM_001114600	HPRD:13213	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81316	chr5	98851511	98851974	+	18.99353	NA	Intergenic	Intergenic	-17952	NR_110562	102724855	Hs.519477	NR_110562		CTD-2151A2.1	-	uncharacterized LOC102724855	ncRNA
19-PTNLD28-TUMOR_peak_52321	chr2	42075356	42075574	+	18.99353	NA	Intergenic	Intergenic	-29230	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LOC388942	-	uncharacterized LOC388942	ncRNA
19-PTNLD28-TUMOR_peak_18322	chr11	45355244	45355471	+	18.99353	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-21565	NR_120557	101928812	Hs.444059	NR_120557	ENSG00000254427	LOC101928812	-	uncharacterized LOC101928812	ncRNA
19-PTNLD28-TUMOR_peak_99795	chr8	102312367	102312685	+	18.98935	NA	Intergenic	Intergenic	-68595	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	-	nascent-polypeptide-associated complex alpha polypeptide pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_14303	chr10	74447995	74448166	+	18.98935	NA	Intergenic	Intergenic	-3809	NR_073062	90550	Hs.591366	NM_138357	HPRD:10696	MCU	C10orf42|CCDC109A	mitochondrial calcium uniporter	protein-coding
19-PTNLD28-TUMOR_peak_5180	chr1	100820613	100820756	+	18.98823	NA	intron (NM_003672, intron 2 of 15)	intron (NM_003672, intron 2 of 15)	2661	NM_033312	8556	Hs.127411	NM_003672	HPRD:04614	CDC14A	cdc14|hCDC14	cell division cycle 14A	protein-coding
19-PTNLD28-TUMOR_peak_88516	chr6	82854748	82854900	+	18.98282	NA	Intergenic	Intergenic	102647	NM_015525	25998	Hs.306425	NM_015525	HPRD:12105	IBTK	BTBD26|BTKI	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_24224	chr12	51405812	51405971	+	18.98204	NA	intron (NM_001174125, intron 1 of 15)	intron (NM_001174125, intron 1 of 15)	-2838	NM_001174130	4891	Hs.505545	NM_000617	HPRD:02750	SLC11A2	DCT1|DMT1|NRAMP2	solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_1042	chr1	16365068	16365277	+	18.98204	NA	Intergenic	LTR16A1|LTR|ERVL	-5059	NM_000085	1188	Hs.352243	NM_000085	HPRD:03607	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride channel, voltage-sensitive Kb	protein-coding
19-PTNLD28-TUMOR_peak_12292	chr10	20820166	20820386	+	18.98204	NA	Intergenic	L1PA4|LINE|L1	-20623	NR_039822	100616383		NR_039822	miRBase:MI0017306	MIR4675	-	microRNA 4675	ncRNA
19-PTNLD28-TUMOR_peak_84326	chr5	176964840	176965010	+	18.98204	NA	exon (NM_001190946, exon 3 of 9)	exon (NM_001190946, exon 3 of 9)	16623	NR_024019	54540	Hs.484289	NM_019057	HPRD:07671	FAM193B	IRIZIO	family with sequence similarity 193, member B	protein-coding
19-PTNLD28-TUMOR_peak_42778	chr17	60757970	60758297	+	18.98204	NA	intron (NM_006039, intron 16 of 29)	CpG-10983	-40725	NR_036146	100422923		NR_036146		MIR548W	-	microRNA 548w	ncRNA
19-PTNLD28-TUMOR_peak_86314	chr6	28366569	28366742	+	18.98204	NA	intron (NR_028077, intron 1 of 5)	AluY|SINE|Alu	889	NR_028077	9753	Hs.134816	NM_014724		ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_74916	chr4	36290369	36290616	+	18.98204	NA	intron (NM_001170700, intron 1 of 8)	intron (NM_001170700, intron 1 of 8)	4848	NM_001170700	401124	Hs.363407	NM_001136536		DTHD1	-	death domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32351	chr14	105837272	105837390	+	18.98204	NA	intron (NM_001243127, intron 8 of 23)	intron (NM_001243127, intron 8 of 23)	-27589	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
19-PTNLD28-TUMOR_peak_71343	chr3	141145313	141145494	+	18.98204	NA	intron (NM_001080412, intron 7 of 7)	intron (NM_001080412, intron 7 of 7)	-60523	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_95104	chr7	127932520	127932674	+	18.98204	NA	Intergenic	L1PA3|LINE|L1	15219	NR_046216	157247	Hs.552129	NM_175880		MGC27345	-	uncharacterized protein MGC27345	ncRNA
19-PTNLD28-TUMOR_peak_20730	chr11	95921018	95921175	+	18.98204	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-153506	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_41396	chr17	38716509	38716831	+	18.98204	NA	intron (NM_001838, intron 1 of 2)	intron (NM_001838, intron 1 of 2)	5066	NM_001838	1236	Hs.370036	NM_001838	HPRD:02588	CCR7	BLR2|CD197|CDw197|CMKBR7|EBI1	chemokine (C-C motif) receptor 7	protein-coding
19-PTNLD28-TUMOR_peak_85769	chr6	18990636	18991022	+	18.98204	NA	Intergenic	Intergenic	189882	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_25697	chr12	96467193	96467544	+	18.98204	NA	Intergenic	Intergenic	-30070	NM_001256644	4048	Hs.524648	NM_000895	HPRD:01056	LTA4H	-	leukotriene A4 hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_4201	chr1	67944858	67945243	+	18.98204	NA	Intergenic	Intergenic	-48927	NM_001018068	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_60036	chr20	18384860	18385146	+	18.98204	NA	intron (NM_001099407, intron 13 of 20)	L1M4b|LINE|L1	25310	NR_034167	440757	Hs.120399	NM_001004344	HPRD:14632	LINC00851	DZANK1-AS1	long intergenic non-protein coding RNA 851	ncRNA
19-PTNLD28-TUMOR_peak_27284	chr12	133030226	133030505	+	18.98204	NA	Intergenic	Intergenic	-36792	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_74395	chr4	8963233	8963570	+	18.98084	NA	Intergenic	Intergenic	11924	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_85078	chr6	6558143	6558482	+	18.97992	NA	intron (NR_026970, intron 3 of 7)	L1MD2|LINE|L1	-30622	NM_004271	9450	Hs.653138	NM_004271		LY86	MD-1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
19-PTNLD28-TUMOR_peak_72900	chr3	185811970	185812113	+	18.97992	NA	intron (NM_004454, intron 5 of 12)	intron (NM_004454, intron 5 of 12)	14860	NM_004454	2119	Hs.43697	NM_004454	HPRD:09035	ETV5	ERM	ets variant 5	protein-coding
19-PTNLD28-TUMOR_peak_73704	chr3	197894561	197894706	+	18.97728	NA	exon (NM_001145248, exon 5 of 7)	exon (NM_001145248, exon 5 of 7)	15396	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_9736	chr1	206592757	206592922	+	18.97073	NA	intron (NM_001170637, intron 9 of 19)	intron (NM_001170637, intron 9 of 19)	35472	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_32177	chr14	103576168	103576409	+	18.97073	NA	intron (NM_001077594, intron 10 of 10)	intron (NM_001077594, intron 10 of 10)	9807	NM_001077594	91828	Hs.37712	NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3-like 4	protein-coding
19-PTNLD28-TUMOR_peak_2632	chr1	39624868	39625195	+	18.97073	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	75192	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_38315	chr16	67275108	67275341	+	18.97030	NA	intron (NM_013241, intron 1 of 21)	intron (NM_013241, intron 1 of 21)	6201	NM_013241	29109	Hs.95231	NM_013241	HPRD:06049	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_34471	chr15	74492777	74492982	+	18.96177	NA	intron (NM_001142617, intron 2 of 18)	intron (NM_001142617, intron 2 of 18)	2341	NM_022369	64220	Hs.24553	NM_022369	HPRD:18122	STRA6	MCOPCB8|MCOPS9	stimulated by retinoic acid 6	protein-coding
19-PTNLD28-TUMOR_peak_52241	chr2	38977565	38977809	+	18.96177	NA	intron (NM_001031684, intron 1 of 7)	CpG	949	NM_001031684	6432	Hs.309090	NM_006276	HPRD:08991	SRSF7	9G8|AAG3|SFRS7	serine/arginine-rich splicing factor 7	protein-coding
19-PTNLD28-TUMOR_peak_29991	chr14	39278024	39278304	+	18.95511	NA	intron (NR_039982, intron 4 of 4)	L1PB1|LINE|L1	107922	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
19-PTNLD28-TUMOR_peak_56326	chr2	152586876	152587093	+	18.95511	NA	intron (NM_001164508, intron 3 of 181)	intron (NM_001164508, intron 3 of 181)	4017	NM_001164508	4703	Hs.588655	NM_004543	HPRD:01196	NEB	NEB177D|NEM2	nebulin	protein-coding
19-PTNLD28-TUMOR_peak_15793	chr10	116444748	116444903	+	18.95511	NA	promoter-TSS (NM_001003408)	promoter-TSS (NM_001003408)	-411	NM_001003407	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45733	chr18	47876077	47876314	+	18.95511	NA	Intergenic	L1HS|LINE|L1	-25197	NM_145060	220134	Hs.134726	NM_145060	HPRD:12689	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_11233	chr1	239024649	239025248	+	18.95511	NA	Intergenic	MER51B|LTR|ERV1	-375631	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_20406	chr11	85753039	85753232	+	18.95511	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	27004	NM_001008660	8301	Hs.163893	NM_007166	HPRD:04320	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
19-PTNLD28-TUMOR_peak_88471	chr6	80280011	80280310	+	18.95511	NA	Intergenic	Intergenic	-33013	NM_001122769	167691	Hs.21945	NM_181714	HPRD:10791	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
19-PTNLD28-TUMOR_peak_40319	chr17	16301896	16302221	+	18.95511	NA	Intergenic	Intergenic	-16798	NM_016113	51393	Hs.279746	NM_016113	HPRD:05980	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_97417	chr8	19309999	19310262	+	18.95511	NA	intron (NM_001130518, intron 5 of 9)	intron (NM_001130518, intron 5 of 9)	138643	NM_001174159	63898	Hs.303208	NM_022071	HPRD:08340	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_38079	chr16	57841977	57842351	+	18.94444	NA	Intergenic	Intergenic	-2385	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_56948	chr2	172379810	172380440	+	18.94444	NA	intron (NM_001127383, intron 1 of 2)	CpG	1259	NM_001127383	79901	Hs.221941	NM_024843	HPRD:05764	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_58140	chr2	210291215	210291397	+	18.94444	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	2535	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_100932	chr8	130838510	130838687	+	18.94428	NA	Intergenic	Intergenic	-39464	NM_031415	56169	Hs.133244	NM_031415	HPRD:12222	GSDMC	MLZE	gasdermin C	protein-coding
19-PTNLD28-TUMOR_peak_42014	chr17	46064686	46065182	+	18.94428	NA	Intergenic	Intergenic	16612	NM_001278217	80279	Hs.20157	NM_025197	HPRD:12190	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_40322	chr17	16322488	16322685	+	18.94428	NA	intron (NM_016113, intron 2 of 14)	intron (NM_016113, intron 2 of 14)	3730	NM_016113	51393	Hs.279746	NM_016113	HPRD:05980	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_95716	chr7	138592319	138592617	+	18.94428	NA	intron (NM_001164665, intron 5 of 19)	intron (NM_001164665, intron 5 of 19)	73596	NM_020910	57670	Hs.605380	NM_020910	ENSG00000122778	KIAA1549	-	KIAA1549	protein-coding
19-PTNLD28-TUMOR_peak_80154	chr5	60474593	60474910	+	18.94428	NA	intron (NR_109908, intron 1 of 3)	intron (NR_109908, intron 1 of 3)	-16449	NM_001048249	643155	Hs.508479	NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
19-PTNLD28-TUMOR_peak_94118	chr7	97650908	97651077	+	18.94428	NA	Intergenic	Intergenic	-31576	NM_006188	4951	Hs.510456	NM_006188	HPRD:01274	OCM2	OCM	oncomodulin 2	protein-coding
19-PTNLD28-TUMOR_peak_33561	chr15	51329259	51329473	+	18.94428	NA	Intergenic	L1PA3|LINE|L1	68107	NM_207381	388121	Hs.306343	NM_207381	HPRD:13452	TNFAIP8L3	-	tumor necrosis factor, alpha-induced protein 8-like 3	protein-coding
19-PTNLD28-TUMOR_peak_98661	chr8	49320394	49320790	+	18.94049	NA	Intergenic	Intergenic	-143535	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_41802	chr17	43339329	43339741	+	18.94049	NA	promoter-TSS (NM_152343)	promoter-TSS (NM_152343)	-56	NM_152343	124783	Hs.412719	NM_152343	HPRD:08690	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
19-PTNLD28-TUMOR_peak_47941	chr19	17830815	17831044	+	18.93909	NA	intron (NM_018174, intron 1 of 6)	intron (NM_018174, intron 1 of 6)	626	NM_018174	55201	Hs.66048	NM_018174	HPRD:10461	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
19-PTNLD28-TUMOR_peak_24151	chr12	50020092	50020261	+	18.93024	NA	intron (NR_052006, intron 1 of 24)	intron (NR_052006, intron 1 of 24)	2773	NM_012272	25766	Hs.706827	NM_012272	HPRD:11044	PRPF40B	HYPC	PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_84908	chr6	3523599	3523886	+	18.92925	NA	Intergenic	Intergenic	-66949	NM_015482	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_65530	chr22	39162223	39162416	+	18.92579	NA	Intergenic	Intergenic	-10295	NM_015374	25777	Hs.517622	NM_015374	HPRD:15611	SUN2	UNC84B	Sad1 and UNC84 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24189	chr12	50596139	50596293	+	18.92579	NA	promoter-TSS (NM_001243775)	promoter-TSS (NM_001243775)	-900	NM_001243775	51474	Hs.525419	NM_016357	HPRD:09755	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_70213	chr3	123150673	123151074	+	18.92579	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	-15684	NM_001199642	111	Hs.593292	NM_183357	HPRD:08973	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
19-PTNLD28-TUMOR_peak_9854	chr1	208393099	208393307	+	18.92579	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	24462	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_33320	chr15	43460457	43460758	+	18.92579	NA	intron (NM_024956, intron 10 of 13)	L1M1|LINE|L1	-16859	NR_045998	23582	Hs.36794	NM_012142		CCNDBP1	DIP1|GCIP|HHM	cyclin D-type binding-protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16806	chr11	4514354	4514754	+	18.92281	NA	Intergenic	LTR13|LTR|ERVK	4445	NM_001005171	390036	Hs.553726	NM_001005171	HPRD:15018	OR52K1	OR11-8	olfactory receptor, family 52, subfamily K, member 1	protein-coding
19-PTNLD28-TUMOR_peak_10282	chr1	223432181	223432318	+	18.92281	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	105295	NM_017982	55061	Hs.497841	NM_017982	HPRD:07641	SUSD4	PRO222	sushi domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_109880	chrX	152805026	152805258	+	18.92028	NA	intron (NM_001001344, intron 1 of 19)	intron (NM_001001344, intron 1 of 19)	3562	NM_021949	492	Hs.533956	NM_021949	HPRD:02057	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase, Ca++ transporting, plasma membrane 3	protein-coding
19-PTNLD28-TUMOR_peak_85708	chr6	17580764	17581080	+	18.91922	NA	Intergenic	LTR12C|LTR|ERV1	-19596	NM_016255	51439	Hs.95260	NM_016255	HPRD:13316	FAM8A1	AHCP	family with sequence similarity 8, member A1	protein-coding
19-PTNLD28-TUMOR_peak_40727	chr17	25681533	25681767	+	18.90587	NA	Intergenic	Intergenic	60544	NM_134265	26118	Hs.446017	NM_015626	HPRD:15680	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72859	chr3	185293241	185293433	+	18.89941	NA	Intergenic	Intergenic	-10694	NM_021627	59343	Hs.401388	NM_021627		SENP2	AXAM2|SMT3IP2	SUMO1/sentrin/SMT3 specific peptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_36192	chr16	9759677	9759872	+	18.89941	NA	Intergenic	Intergenic	-101526	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_87339	chr6	40219531	40219749	+	18.89941	NA	Intergenic	MIR3|SINE|MIR	104105	NR_038887	401260	Hs.654837	NM_001001705		LINC00951	-	long intergenic non-protein coding RNA 951	ncRNA
19-PTNLD28-TUMOR_peak_73207	chr3	190418936	190419097	+	18.89941	NA	Intergenic	Intergenic	161449	NM_001146686	647309	Hs.518490	NM_001146686	ENSG00000205835	GMNC	GEMC1	geminin coiled-coil domain containing	protein-coding
19-PTNLD28-TUMOR_peak_8940	chr1	187623884	187624056	+	18.89941	NA	Intergenic	MIR|SINE|MIR	825938	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_17332	chr11	13797792	13797950	+	18.89941	NA	Intergenic	MER20|DNA|hAT-Charlie	107665	NM_032228	84188	Hs.501991	NM_032228	HPRD:14724	FAR1	MLSTD2|SDR10E1	fatty acyl CoA reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_109848	chrX	152404605	152404787	+	18.89941	NA	Intergenic	Intergenic	66437	NM_032882	84968	Hs.533301	NM_032882	HPRD:06637	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding
19-PTNLD28-TUMOR_peak_45394	chr18	41604198	41604595	+	18.89941	NA	Intergenic	L1HS|LINE|L1	507266	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_32673	chr15	27287663	27288057	+	18.89941	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	71431	NM_033223	2567	Hs.569475	NM_033223	HPRD:02579	GABRG3	-	gamma-aminobutyric acid (GABA) A receptor, gamma 3	protein-coding
19-PTNLD28-TUMOR_peak_33553	chr15	51146738	51147102	+	18.89941	NA	Intergenic	Intergenic	-53949	NM_007347	23431	Hs.413366	NM_007347	HPRD:06258	AP4E1	CPSQ4|SPG51	adaptor-related protein complex 4, epsilon 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_6941	chr1	153325048	153325185	+	18.89025	NA	Intergenic	Intergenic	-4094	NM_020393	57115	Hs.58356	NM_020393	HPRD:16298	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB	peptidoglycan recognition protein 4	protein-coding
19-PTNLD28-TUMOR_peak_92568	chr7	51384053	51384250	+	18.89025	NA	intron (NM_001287436, intron 1 of 13)	CpG	364	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_61872	chr20	49464885	49465056	+	18.87743	NA	intron (NM_198799, intron 4 of 4)	L2b|LINE|L2	53539	NM_001010974	55653	Hs.381178	NM_017843	HPRD:06314	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
19-PTNLD28-TUMOR_peak_101868	chr9	178367	178677	+	18.87743	NA	intron (NM_001145355, intron 1 of 15)	MIRc|SINE|MIR	553	NM_001145355	55871	Hs.531330	NM_018491	HPRD:16686	CBWD1	COBP	COBW domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_66869	chr3	14988629	14989150	+	18.87027	NA	promoter-TSS (NM_003298)	promoter-TSS (NM_003298)	123	NR_046254	100505641	Hs.517821	NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55983	chr2	137925326	137925482	+	18.86999	NA	intron (NM_001080427, intron 5 of 26)	intron (NM_001080427, intron 5 of 26)	176942	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_2793	chr1	41397860	41398039	+	18.86999	NA	Intergenic	Intergenic	-47022	NR_125440	1503	Hs.473087	NM_001905	HPRD:00465	CTPS1	CTPS|IMD24	CTP synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_105079	chr9	106004358	106004643	+	18.86999	NA	intron (NR_121578, intron 6 of 9)	intron (NR_121578, intron 6 of 9)	82815	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
19-PTNLD28-TUMOR_peak_25627	chr12	94954704	94954918	+	18.86999	NA	promoter-TSS (NR_049885)	promoter-TSS (NR_049885)	-754	NR_049885	100847031		NR_049885	miRBase:MI0019307	MIR5700	-	microRNA 5700	ncRNA
19-PTNLD28-TUMOR_peak_97145	chr8	11035280	11035718	+	18.86999	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	23376	NM_173683	286046	Hs.657083	NM_173683	HPRD:12926	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK, Kell blood group complex subunit-related family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_29605	chr14	24834934	24835160	+	18.86968	NA	Intergenic	Intergenic	-1070	NM_001198967	4776	Hs.77810	NM_004554	HPRD:09096	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	protein-coding
19-PTNLD28-TUMOR_peak_14225	chr10	73453286	73453424	+	18.86609	NA	intron (NM_001171930, intron 19 of 30)	MamRep4096|DNA|hAT?	26223	NM_001164375	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_14784	chr10	89577715	89578195	+	18.86609	NA	promoter-TSS (NM_032810)	promoter-TSS (NM_032810)	-38	NM_032810	84896	Hs.435948	NM_032810	HPRD:12499	ATAD1	AFDC1|THORASE	ATPase family, AAA domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_104922	chr9	101039393	101039662	+	18.86285	NA	Intergenic	AluJo|SINE|Alu	-21524	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_17716	chr11	27223614	27223850	+	18.86285	NA	intron (NR_125767, intron 2 of 4)	intron (NR_125767, intron 2 of 4)	16583	NR_125768	103695435	Hs.196133	NR_125766		BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31739	chr14	92938384	92938565	+	18.86285	NA	intron (NM_153647, intron 13 of 17)	MER74A|LTR|ERVL	-41651	NM_024832	79890	Hs.326822	NM_024832	HPRD:11494	RIN3	-	Ras and Rab interactor 3	protein-coding
19-PTNLD28-TUMOR_peak_98290	chr8	38706302	38706446	+	18.86285	NA	3' UTR (NM_006283, exon 13 of 13)	3' UTR (NM_006283, exon 13 of 13)	-52379	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_76940	chr4	124509368	124509539	+	18.86285	NA	Intergenic	Intergenic	-64487	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_30024	chr14	40817717	40817857	+	18.86285	NA	Intergenic	L1PA2|LINE|L1	-606129	NR_109758	644919	Hs.434414	NR_109757		LOC644919	-	uncharacterized LOC644919	ncRNA
19-PTNLD28-TUMOR_peak_83236	chr5	150226707	150226905	+	18.86285	NA	intron (NM_001145805, intron 1 of 1)	intron (NM_001145805, intron 1 of 1)	721	NM_001145805	345611	Hs.519680	NM_001145805	ENSG00000237693	IRGM	IFI1|IRGM1|LRG-47|LRG47	immunity-related GTPase family, M	protein-coding
19-PTNLD28-TUMOR_peak_75829	chr4	78275038	78275230	+	18.86285	NA	Intergenic	Intergenic	-157773	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_67962	chr3	47018489	47018685	+	18.85897	NA	promoter-TSS (NR_102269)	promoter-TSS (NR_102269)	-330	NM_001277074	151903	Hs.631918	NM_144716	HPRD:13007	CCDC12	-	coiled-coil domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_54619	chr2	103232418	103232548	+	18.85885	NA	Intergenic	Intergenic	-3683	NM_003048	6549	Hs.250083	NM_003048	HPRD:02756	SLC9A2	NHE2	solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2	protein-coding
19-PTNLD28-TUMOR_peak_40006	chr17	7620599	7621002	+	18.85885	NA	Intergenic	CpG	-2239	NM_020877	146754	Hs.367649	NM_020877	HPRD:17214	DNAH2	DNAHC2|DNHD3	dynein, axonemal, heavy chain 2	protein-coding
19-PTNLD28-TUMOR_peak_6348	chr1	145772294	145772470	+	18.85885	NA	intron (NR_036541, intron 10 of 13)	MER58A|DNA|hAT-Charlie	44716	NM_001201326	5174	Hs.444751	NM_002614	HPRD:04829	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69141	chr3	75568232	75568430	+	18.85885	NA	Intergenic	Intergenic	-84065	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86, member D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_68363	chr3	52832924	52833283	+	18.85885	NA	exon (NM_002217, exon 7 of 22)	exon (NM_002217, exon 7 of 22)	4319	NM_002217	3699	Hs.76716	NM_002217	HPRD:00891	ITIH3	H3P	inter-alpha-trypsin inhibitor heavy chain 3	protein-coding
19-PTNLD28-TUMOR_peak_23440	chr12	25877238	25877433	+	18.85885	NA	Intergenic	Intergenic	-75839	NM_001145727	160492	Hs.44647	NM_152590	HPRD:08768	LMNTD1	IFLTD1|PAS1C1	lamin tail domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_11092	chr1	235680459	235680739	+	18.85885	NA	Intergenic	Intergenic	-12818	NM_152490	148789	Hs.498143	NM_152490	HPRD:16533	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_33185	chr15	40799334	40799527	+	18.85885	NA	Intergenic	CpG	25319	NR_002208	359821	Hs.678598	NR_002208		MRPL42P5	-	mitochondrial ribosomal protein L42 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_107129	chrUn_gl000222	94549	95262	+	18.85885	NA	Intergenic	CpG	-5595	NR_037925	647476	Hs.274541	NR_037925		FLJ20518	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71008	chr3	134370498	134370704	+	18.84507	NA	promoter-TSS (NM_178554)	promoter-TSS (NM_178554)	-737	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_89686	chr6	139454446	139454688	+	18.84341	NA	Intergenic	MER51A|LTR|ERV1	-1682	NM_016217	51696	Hs.197644	NM_016217	HPRD:16265	HECA	HDC|HDCL|HHDC|dJ225E12.1	headcase homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_42759	chr17	60352884	60352988	+	18.84341	NA	promoter-TSS (NR_027486)	promoter-TSS (NR_027486)	80	NR_027486	440452	Hs.448884	NR_027486	ENSG00000188755	TBC1D3P2	-	TBC1 domain family, member 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_78317	chr4	185667745	185667924	+	18.84341	NA	Intergenic	Intergenic	-12548	NM_024629	79682	Hs.575032	NM_024629	HPRD:14722	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
19-PTNLD28-TUMOR_peak_17840	chr11	32333898	32334303	+	18.84133	NA	Intergenic	Intergenic	118263	NM_001198552	7490	Hs.591980	NM_000378	HPRD:06163	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
19-PTNLD28-TUMOR_peak_7347	chr1	156664020	156664241	+	18.84008	NA	Intergenic	Intergenic	11329	NM_001878	1382	Hs.405662	NM_001878	HPRD:08353	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_87394	chr6	41039590	41039783	+	18.83814	NA	intron (NM_145063, intron 1 of 5)	intron (NM_145063, intron 1 of 5)	502	NM_145063	221443	Hs.227457	NM_145063	HPRD:12849	OARD1	C6orf130|TARG1|dJ34B21.3	O-acyl-ADP-ribose deacylase 1	protein-coding
19-PTNLD28-TUMOR_peak_49440	chr19	46284902	46285291	+	18.83410	NA	intron (NM_001288764, intron 1 of 15)	intron (NM_001288764, intron 1 of 15)	719	NM_001081560	1760	Hs.631596	NM_004409	HPRD:05645	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_66834	chr3	14503339	14503497	+	18.82570	NA	intron (NR_103507, intron 6 of 13)	intron (NR_103507, intron 6 of 13)	59342	NM_001134368	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_10508	chr1	226683524	226683700	+	18.82570	NA	Intergenic	Intergenic	-52889	NM_001003665	375057	Hs.116827	NM_001003665	HPRD:16821	C1orf95	-	chromosome 1 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_3174	chr1	46113220	46113417	+	18.82570	NA	promoter-TSS (NR_026768)	promoter-TSS (NR_026768)	-961	NR_026768	728963	Hs.675157	NR_026768		RPS15AP10	RPS15A_4_42	ribosomal protein S15a pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_93368	chr7	74623628	74623774	+	18.82570	NA	non-coding (NR_003580, exon 8 of 24).2	non-coding (NR_003580, exon 8 of 24).2	29758	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_42190	chr17	48132459	48132692	+	18.82119	NA	promoter-TSS (NM_002204)	promoter-TSS (NM_002204)	528	NR_038230	284080	Hs.274864	NR_038230	ENSG00000246640	LOC284080	-	uncharacterized LOC284080	ncRNA
19-PTNLD28-TUMOR_peak_46875	chr19	5968071	5968290	+	18.81721	NA	intron (NM_001300865, intron 1 of 15)	intron (NM_001300865, intron 1 of 15)	10140	NM_001300865	8498	Hs.531752	NM_003624	HPRD:04508	RANBP3	-	RAN binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_53098	chr2	65034586	65034841	+	18.81721	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	56052	NR_110224	101927438	Hs.580313	NR_110224		LOC101927438	-	uncharacterized LOC101927438	ncRNA
19-PTNLD28-TUMOR_peak_91050	chr7	5111556	5111822	+	18.81721	NA	promoter-TSS (NR_015343)	promoter-TSS (NR_015343)	-2	NR_015343	389458	Hs.733005	NM_203393		RBAKDN	-	RBAK downstream neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_104567	chr9	94444070	94444265	+	18.81721	NA	Intergenic	Intergenic	-45540	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	ncRNA
19-PTNLD28-TUMOR_peak_17688	chr11	26306306	26306485	+	18.81721	NA	Intergenic	AluY|SINE|Alu	-47283	NM_031418	63982	Hs.91791	NM_031418	HPRD:15526	ANO3	C11orf25|DYT23|DYT24|TMEM16C	anoctamin 3	protein-coding
19-PTNLD28-TUMOR_peak_43993	chr17	79618723	79619003	+	18.81721	NA	intron (NR_026872, intron 1 of 2)	intron (NR_026872, intron 1 of 2)	4744	NR_026872	5148	Hs.654482	NM_002602	HPRD:08914	PDE6G	PDEG|RP57	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding
19-PTNLD28-TUMOR_peak_84972	chr6	4323147	4323378	+	18.81530	NA	Intergenic	L2a|LINE|L2	186956	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_10265	chr1	223307184	223307652	+	18.81183	NA	intron (NM_003268, intron 4 of 5)	MIRb|SINE|MIR	9206	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_34453	chr15	74281833	74281977	+	18.81111	NA	intron (NM_001256676, intron 2 of 6)	intron (NM_001256676, intron 2 of 6)	2784	NM_001256675	9399	Hs.194816	NM_004809	HPRD:16314	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_36331	chr16	12024370	12024516	+	18.81111	NA	Intergenic	Intergenic	-13924	NM_001130007	2935	Hs.528780	NM_002094	HPRD:00753	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
19-PTNLD28-TUMOR_peak_85117	chr6	6892120	6892741	+	18.80996	NA	Intergenic	Intergenic	-215400	NM_001168344	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_5420	chr1	110359186	110359432	+	18.80996	NA	Intergenic	Intergenic	-52665	NM_024526	79574	Hs.485352	NM_024526	HPRD:13277	EPS8L3	EPS8R3	EPS8-like 3	protein-coding
19-PTNLD28-TUMOR_peak_9847	chr1	208333307	208333531	+	18.79740	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	84246	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_43125	chr17	66432587	66432771	+	18.79740	NA	intron (NM_017983, intron 4 of 12)	intron (NM_017983, intron 4 of 12)	-11990	NR_030365	693220		NR_030365		MIR635	MIRN635|hsa-mir-635	microRNA 635	ncRNA
19-PTNLD28-TUMOR_peak_45278	chr18	34983054	34983451	+	18.79642	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	162748	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_94724	chr7	106133498	106133866	+	18.79642	NA	Intergenic	L1PA7|LINE|L1	167952	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_4800	chr1	90396180	90396310	+	18.79642	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	64280	NR_002830	492303	Hs.550796	NR_002830		GEMIN8P4	-	gem (nuclear organelle) associated protein 8 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_18441	chr11	47174707	47174881	+	18.79642	NA	intron (NM_001003676, intron 4 of 7)	intron (NM_001003676, intron 4 of 7)	23882	NM_001242832	84364	Hs.436204	NM_032389	HPRD:06069	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP-ribosylation factor GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_61117	chr20	39862106	39862271	+	18.79500	NA	intron (NM_015035, intron 2 of 3)	intron (NM_015035, intron 2 of 3)	64525	NR_106931	102466912		NR_106931		MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
19-PTNLD28-TUMOR_peak_39329	chr16	88184852	88185060	+	18.79188	NA	Intergenic	CpG	-42931	NR_110944	101928880	Hs.634835	NR_110944	ENSG00000260420	LOC101928880	LA16c-444G7.2	uncharacterized LOC101928880	ncRNA
19-PTNLD28-TUMOR_peak_11355	chr1	243636779	243637128	+	18.79188	NA	intron (NM_006642, intron 16 of 17)	intron (NM_006642, intron 16 of 17)	127475	NR_039824	100616343		NR_039824		MIR4677	-	microRNA 4677	ncRNA
19-PTNLD28-TUMOR_peak_60538	chr20	31556696	31556911	+	18.79188	NA	Intergenic	Intergenic	35436	NM_080675	140732	Hs.375186	NM_080675	HPRD:15422	SUN5	SPAG4L|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_35516	chr15	101458270	101458646	+	18.79188	NA	Intergenic	CpG	-1002	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_65813	chr22	43603909	43604092	+	18.79188	NA	intron (NM_173050, intron 20 of 21)	L2c|LINE|L2	-20863	NM_015140	23170	Hs.517670	NM_015140	HPRD:13782	TTLL12	dJ526I14.2	tubulin tyrosine ligase-like family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_64748	chr22	24585710	24585932	+	18.79188	NA	TTS (NM_019601)	TTS (NM_019601)	8377	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_86979	chr6	34994281	34994438	+	18.78857	NA	intron (NM_015245, intron 11 of 23)	L2a|LINE|L2	114828	NM_001261818	6954	Hs.435371	NM_018679	HPRD:01749	TCP11	D6S230E|FPPR	t-complex 11, testis-specific	protein-coding
19-PTNLD28-TUMOR_peak_12564	chr10	27443253	27443466	+	18.78590	NA	promoter-TSS (NM_032844)	promoter-TSS (NM_032844)	-10	NM_014263	10730	Hs.74647	NM_014263	HPRD:06981	YME1L1	FTSH|MEG4|PAMP|YME1L	YME1-like 1 ATPase	protein-coding
19-PTNLD28-TUMOR_peak_79123	chr5	16813203	16813403	+	18.77753	NA	intron (NM_012334, intron 3 of 40)	intron (NM_012334, intron 3 of 40)	123082	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_63293	chr21	35574290	35574521	+	18.77392	NA	Intergenic	CpG	21427	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
19-PTNLD28-TUMOR_peak_27962	chr13	41403409	41403560	+	18.77392	NA	intron (NR_038259, intron 4 of 5)	L1PA2|LINE|L1	18582	NR_030352	693206		NR_030352	miRBase:MI0003635	MIR621	MIRN621|hsa-mir-621	microRNA 621	ncRNA
19-PTNLD28-TUMOR_peak_50981	chr2	9546177	9546664	+	18.77392	NA	TTS (NM_001135191)	TTS (NM_001135191)	17223	NM_004763	9270	Hs.467662	NM_004763	HPRD:06194	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_31443	chr14	77780434	77780777	+	18.77146	NA	intron (NM_013382, intron 1 of 20)	LTR40c|LTR|ERVL	6620	NM_013382	29954	Hs.132989	NM_013382	HPRD:09592	POMT2	LGMD2N|MDDGA2|MDDGB2|MDDGC2	protein-O-mannosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_2470	chr1	37218742	37218878	+	18.77146	NA	Intergenic	Intergenic	-269895	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_29331	chr14	21040476	21040832	+	18.77146	NA	Intergenic	HERVL-int|LTR|ERVL	-11564	NM_001001673	390443	Hs.533972	NM_001001673	HPRD:17983	RNASE9	HEL128|RAK1|h461	ribonuclease, RNase A family, 9 (non-active)	protein-coding
19-PTNLD28-TUMOR_peak_100614	chr8	125667583	125667800	+	18.77146	NA	intron (NM_001282974, intron 3 of 13)	intron (NM_001282974, intron 3 of 13)	73057	NM_001282971	9788	Hs.336994	NM_014751	HPRD:12243	MTSS1	MIM|MIMA|MIMB	metastasis suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_84761	chr6	1833156	1833331	+	18.77146	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	222562	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_3903	chr1	60929643	60929866	+	18.77146	NA	Intergenic	Intergenic	361502	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_13895	chr10	64952654	64952865	+	18.77146	NA	exon (NM_032776, exon 16 of 26)	exon (NM_032776, exon 16 of 26)	59752	NM_030759	29982	Hs.449628	NM_030759	HPRD:11401	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_99375	chr8	85538474	85538673	+	18.77146	NA	intron (NM_001100392, intron 3 of 9)	intron (NM_001100392, intron 3 of 9)	-79589	NM_001287244	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_105318	chr9	112192388	112192541	+	18.77146	NA	intron (NM_002829, intron 10 of 25)	intron (NM_002829, intron 10 of 25)	-1141	NM_001145372	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_68535	chr3	57204261	57204482	+	18.77146	NA	Intergenic	CpG	-4968	NM_017563	54756	Hs.150725	NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
19-PTNLD28-TUMOR_peak_31814	chr14	94431760	94432029	+	18.77146	NA	intron (NM_001202429, intron 1 of 9)	intron (NM_001202429, intron 1 of 9)	-8127	NM_016150	51676	Hs.510327	NM_016150	HPRD:05768	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
19-PTNLD28-TUMOR_peak_15743	chr10	115742574	115742891	+	18.77146	NA	Intergenic	Intergenic	-61074	NM_000684	153	Hs.99913	NM_000684	HPRD:00181	ADRB1	ADRB1R|B1AR|BETA1AR|RHR	adrenoceptor beta 1	protein-coding
19-PTNLD28-TUMOR_peak_78735	chr5	4615957	4616084	+	18.75377	NA	Intergenic	L1PA2|LINE|L1	-157574	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_104848	chr9	100000394	100001100	+	18.75377	NA	promoter-TSS (NR_036529)	promoter-TSS (NR_036529)	39	NR_036528	57653	Hs.435629	NR_036527		LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
19-PTNLD28-TUMOR_peak_35240	chr15	91475031	91475207	+	18.75196	NA	exon (NM_198527, exon 3 of 4)	exon (NM_198527, exon 3 of 4)	680	NM_001286451	374659	Hs.349979	NM_198527	HPRD:14635	HDDC3	(ppGpp)ase|MESH1	HD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_82183	chr5	133303490	133303659	+	18.75092	NA	intron (NM_020199, intron 1 of 2)	intron (NM_020199, intron 1 of 2)	832	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_24664	chr12	56473562	56473969	+	18.75092	NA	promoter-TSS (NM_001982)	promoter-TSS (NM_001982)	-44	NM_001982	2065	Hs.118681	NM_001982	HPRD:01820	ERBB3	ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_104925	chr9	101077960	101078133	+	18.74679	NA	intron (NM_005458, intron 13 of 18)	intron (NM_005458, intron 13 of 18)	-60043	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_50008	chr19	51412669	51412887	+	18.74679	NA	intron (NM_004917, intron 1 of 4)	intron (NM_004917, intron 1 of 4)	1216	NM_004917	9622	Hs.218366	NM_004917	HPRD:04793	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein-related peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_58806	chr2	232265029	232265172	+	18.73662	NA	3' UTR (NM_145236, exon 2 of 2)	3' UTR (NM_145236, exon 2 of 2)	4765	NM_145236	93010	Hs.299329	NM_145236	HPRD:12512	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_83242	chr5	150414366	150414509	+	18.73662	NA	intron (NM_001258454, intron 15 of 17)	MIR|SINE|MIR	14438	NM_002084	2878	Hs.386793	NM_002084	HPRD:11750	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3 (plasma)	protein-coding
19-PTNLD28-TUMOR_peak_65934	chr22	46028630	46029249	+	18.73662	NA	Intergenic	Intergenic	-38739	NM_001167621	25814	Hs.475125	NM_013236	HPRD:04624	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding
19-PTNLD28-TUMOR_peak_3525	chr1	53245512	53245666	+	18.73614	NA	exon (NM_024646, exon 4 of 14)	exon (NM_024646, exon 4 of 14)	53458	NM_024646	79699	Hs.476280	NM_024646	HPRD:13356	ZYG11B	ZYG11	zyg-11 family member B, cell cycle regulator	protein-coding
19-PTNLD28-TUMOR_peak_42738	chr17	59582072	59582337	+	18.73614	NA	Intergenic	L2|LINE|L2	48397	NM_018488	9496	Hs.143907	NM_018488	HPRD:03424	TBX4	SPS	T-box 4	protein-coding
19-PTNLD28-TUMOR_peak_103082	chr9	38921382	38921553	+	18.73614	NA	Intergenic	Intergenic	300382	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_62115	chr20	52851631	52851850	+	18.73614	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	27238	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_45608	chr18	45883337	45883550	+	18.73614	NA	Intergenic	Intergenic	-181984	NM_014772	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_18227	chr11	44058977	44059160	+	18.73614	NA	Intergenic	Intergenic	-10463	NM_001031854	390110	Hs.558851	NM_001031854	ENSG00000205126	ACCSL	-	1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like	protein-coding
19-PTNLD28-TUMOR_peak_4058	chr1	64343563	64343775	+	18.73614	NA	intron (NM_001083592, intron 1 of 6)	intron (NM_001083592, intron 1 of 6)	103979	NM_001083592	4919	Hs.128753	NM_005012	HPRD:03821	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_67882	chr3	45709566	45709829	+	18.73614	NA	intron (NM_014240, intron 3 of 7)	intron (NM_014240, intron 3 of 7)	20677	NR_033947	644714	Hs.712889	NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56017	chr2	138817869	138818175	+	18.73614	NA	Intergenic	Intergenic	96214	NM_001024075	3176	Hs.42151	NM_006895	HPRD:05575	HNMT	HMT|HNMT-S1|HNMT-S2	histamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_93772	chr7	86227674	86228076	+	18.73614	NA	Intergenic	L1PA13|LINE|L1	-45355	NM_000840	2913	Hs.590575	NM_000840	HPRD:03070	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate receptor, metabotropic 3	protein-coding
19-PTNLD28-TUMOR_peak_1370	chr1	22290534	22290704	+	18.73614	NA	Intergenic	Intergenic	-12799	NM_007352	23436	Hs.728752	NM_007352	HPRD:06498	CELA3B	CBPP|E1|EL-1|ELA3B	chymotrypsin-like elastase family, member 3B	protein-coding
19-PTNLD28-TUMOR_peak_23228	chr12	14955965	14956160	+	18.73132	NA	promoter-TSS (NM_175874)	promoter-TSS (NM_175874)	339	NM_016312	51729	Hs.655138	NM_016312	HPRD:18293	WBP11	NPWBP|PPP1R165|SIPP1|WBP-11	WW domain binding protein 11	protein-coding
19-PTNLD28-TUMOR_peak_37491	chr16	33416514	33416627	+	18.72547	NA	Intergenic	AluJr|SINE|Alu	-117868	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_108170	chrX	47157324	47157716	+	18.72547	NA	Intergenic	AluJb|SINE|Alu	65206	NM_004651	8237	Hs.171501	NM_004651	HPRD:02081	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_66280	chr3	5044091	5044346	+	18.72540	NA	Intergenic	Intergenic	23121	NM_003670	8553	Hs.744856	NM_003670	HPRD:16050	BHLHE40	BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14	basic helix-loop-helix family, member e40	protein-coding
19-PTNLD28-TUMOR_peak_33979	chr15	64753619	64753872	+	18.72540	NA	Intergenic	Intergenic	-37874	NM_015042	23060	Hs.595451	NM_015042	HPRD:18754	ZNF609	-	zinc finger protein 609	protein-coding
19-PTNLD28-TUMOR_peak_93075	chr7	70193840	70194344	+	18.72540	NA	intron (NM_001127231, intron 6 of 17)	intron (NM_001127231, intron 6 of 17)	-403431	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_94732	chr7	106256600	106256883	+	18.72540	NA	Intergenic	Intergenic	44893	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_34815	chr15	81666256	81666681	+	18.72356	NA	promoter-TSS (NM_001080532)	promoter-TSS (NM_001080532)	-50	NM_001080532	342125	Hs.253489	NM_001080532		TMC3	-	transmembrane channel-like 3	protein-coding
19-PTNLD28-TUMOR_peak_83950	chr5	171834965	171835111	+	18.72356	NA	intron (NM_001017995, intron 2 of 12)	intron (NM_001017995, intron 2 of 12)	46489	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_34144	chr15	68177073	68177412	+	18.72356	NA	Intergenic	CpG	-44859	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_95173	chr7	128750692	128750986	+	18.72356	NA	Intergenic	L1M4b|LINE|L1	-15486	NR_002144	407835	Hs.592273	NR_002144		LOC407835	-	mitogen-activated protein kinase kinase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_39915	chr17	6478545	6478732	+	18.72356	NA	Intergenic	Intergenic	-18761	NM_031220	83394	Hs.183983	NM_031220	HPRD:07498	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
19-PTNLD28-TUMOR_peak_48441	chr19	30336532	30336750	+	18.72336	NA	Intergenic	L2|LINE|L2	33740	NM_001238	898	Hs.244723	NM_001238	HPRD:00455	CCNE1	CCNE	cyclin E1	protein-coding
19-PTNLD28-TUMOR_peak_103241	chr9	42877698	42877873	+	18.72264	NA	intron (NR_026558, intron 2 of 3)	AluSc|SINE|Alu	-18700	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	ncRNA
19-PTNLD28-TUMOR_peak_2779	chr1	41310945	41311217	+	18.72264	NA	Intergenic	Intergenic	16937	NM_133467	163732	Hs.355820	NM_133467	HPRD:06011	CITED4	-	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding
19-PTNLD28-TUMOR_peak_79109	chr5	16580495	16581064	+	18.72264	NA	intron (NM_001034850, intron 1 of 8)	intron (NM_001034850, intron 1 of 8)	-35256	NR_109946	101929524	Hs.734029	NR_109946		LOC101929524	-	uncharacterized LOC101929524	ncRNA
19-PTNLD28-TUMOR_peak_110017	chrX	153966409	153966585	+	18.72264	NA	intron (NR_104114, intron 1 of 8)	L3|LINE|CR1	12861	NM_001282283	139716	Hs.496982	NM_080612	HPRD:06571	GAB3	-	GRB2-associated binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_42981	chr17	63557590	63557818	+	18.71398	NA	promoter-TSS (NM_004655)	promoter-TSS (NM_004655)	36	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_6282	chr1	145233635	145233952	+	18.71072	NA	intron (NM_203458, intron 1 of 4)	intron (NM_203458, intron 1 of 4)	24680	NM_203458	388677	Hs.655156	NM_203458	HPRD:14833	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_75897	chr4	79697946	79698311	+	18.70797	NA	intron (NM_017593, intron 1 of 13)	intron (NM_017593, intron 1 of 13)	596	NM_198892	55589	Hs.146551	NM_017593	HPRD:09828	BMP2K	BIKE	BMP2 inducible kinase	protein-coding
19-PTNLD28-TUMOR_peak_95178	chr7	128808671	128809184	+	18.69891	NA	3' UTR (NM_178562, exon 8 of 8)	3' UTR (NM_178562, exon 8 of 8)	-19786	NM_005631	6608	Hs.437846	NM_005631	HPRD:03294	SMO	FZD11|Gx|SMOH	smoothened, frizzled class receptor	protein-coding
19-PTNLD28-TUMOR_peak_41516	chr17	40464324	40464624	+	18.69831	NA	TTS (NM_003150)	TTS (NM_003150)	24400	NM_001288720	6776	Hs.437058	NM_003152	HPRD:03301	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
19-PTNLD28-TUMOR_peak_27340	chr13	20368440	20368584	+	18.69831	NA	Intergenic	AluSx|SINE|Alu	-11353	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
19-PTNLD28-TUMOR_peak_30935	chr14	68832052	68832198	+	18.69577	NA	intron (NM_133510, intron 8 of 10)	intron (NM_133510, intron 8 of 10)	428506	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_12094	chr10	13391975	13392225	+	18.69207	NA	Intergenic	Intergenic	-1802	NM_012247	22929	Hs.124027	NM_012247	HPRD:02944	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
19-PTNLD28-TUMOR_peak_62090	chr20	52539594	52539852	+	18.68853	NA	Intergenic	Intergenic	-47475	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_38606	chr16	71446157	71446418	+	18.68097	NA	Intergenic	Intergenic	49830	NM_145911	7571	Hs.656643	NM_145911	HPRD:01915	ZNF23	KOX16|ZNF359|ZNF612|Zfp612	zinc finger protein 23	protein-coding
19-PTNLD28-TUMOR_peak_89469	chr6	131981405	131981656	+	18.68097	NA	intron (NM_005021, intron 6 of 24)	intron (NM_005021, intron 6 of 24)	23088	NM_005021	5169	Hs.486489	NM_005021	HPRD:03715	ENPP3	B10|CD203c|NPP3|PD-IBETA|PDNP3	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding
19-PTNLD28-TUMOR_peak_80786	chr5	75875123	75875339	+	18.68097	NA	intron (NM_001285460, intron 4 of 34)	intron (NM_001285460, intron 4 of 34)	-29689	NM_001285462	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91315	chr7	12713812	12713939	+	18.68097	NA	Intergenic	Intergenic	-12577	NM_001037164	10124	Hs.245540	NM_005738	HPRD:11987	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_87057	chr6	35938120	35938259	+	18.68097	NA	intron (NM_001193476, intron 10 of 19)	intron (NM_001193476, intron 10 of 19)	-49232	NM_003137	6732	Hs.443861	NM_003137	HPRD:15992	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_29007	chr13	109753065	109753317	+	18.68097	NA	exon (NM_001198950, exon 28 of 35)	exon (NM_001198950, exon 28 of 35)	66460	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99349	chr8	82339862	82339994	+	18.68097	NA	Intergenic	L1PA3|LINE|L1	19791	NM_002677	5375	Hs.571512	NM_002677	HPRD:01366	PMP2	FABP8|M-FABP|MP2|P2	peripheral myelin protein 2	protein-coding
19-PTNLD28-TUMOR_peak_22018	chr11	127909479	127909827	+	18.68097	NA	Intergenic	Intergenic	482552	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_76281	chr4	93226673	93226944	+	18.68097	NA	intron (NM_001510, intron 1 of 15)	CpG	1258	NM_001510	2895	Hs.162727	NM_001510	HPRD:06781	GRID2	GluD2	glutamate receptor, ionotropic, delta 2	protein-coding
19-PTNLD28-TUMOR_peak_82242	chr5	133841913	133842090	+	18.68095	NA	promoter-TSS (NR_105045)	promoter-TSS (NR_105045)	-242	NR_105045	101927934	Hs.535775	NR_105045	ENSG00000251169	LOC101927934	-	uncharacterized LOC101927934	ncRNA
19-PTNLD28-TUMOR_peak_95429	chr7	132115638	132115804	+	18.67652	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	145602	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_38381	chr16	67897037	67897399	+	18.67652	NA	intron (NM_005796, intron 1 of 4)	intron (NM_005796, intron 1 of 4)	-9708	NM_014329	23644	Hs.75682	NM_014329	HPRD:06911	EDC4	GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8	enhancer of mRNA decapping 4	protein-coding
19-PTNLD28-TUMOR_peak_43123	chr17	66409707	66410302	+	18.67652	NA	intron (NM_001278433, intron 1 of 10)	L1PA3|LINE|L1	240	NM_001278433	5573	Hs.280342	NM_002734	HPRD:01786	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1	protein kinase, cAMP-dependent, regulatory, type I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_106146	chr9	129747316	129747624	+	18.67652	NA	intron (NM_014636, intron 4 of 18)	MLT1H|LTR|ERVL-MaLR	22966	NM_001190728	9649	Hs.432842	NM_014636	HPRD:11479	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
19-PTNLD28-TUMOR_peak_66458	chr3	9441564	9441709	+	18.66994	NA	intron (NM_001292043, intron 1 of 24)	intron (NM_001292043, intron 1 of 24)	2252	NM_001292043	55209	Hs.288164	NM_018187	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_92134	chr7	41066999	41067275	+	18.66607	NA	Intergenic	Intergenic	-47600	NR_110831	101928744	Hs.639767	NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
19-PTNLD28-TUMOR_peak_16601	chr11	1776924	1777356	+	18.66607	NA	intron (NM_001909, intron 5 of 8)	intron (NM_001909, intron 5 of 8)	-5316	NM_001170820	402778	Hs.121575	NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
19-PTNLD28-TUMOR_peak_59464	chr20	1809165	1809392	+	18.65948	NA	Intergenic	Intergenic	-48886	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12727	chr10	30648674	30648844	+	18.65948	NA	Intergenic	Intergenic	8835	NR_106985	102466227		NR_106985		MIR7162	hsa-mir-7162	microRNA 7162	ncRNA
19-PTNLD28-TUMOR_peak_70219	chr3	123283012	123283251	+	18.65582	NA	intron (NM_198402, intron 3 of 6)	L2c|LINE|L2	20793	NM_198402	201562	Hs.705480	NM_198402		PTPLB	HACD2	protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	protein-coding
19-PTNLD28-TUMOR_peak_88830	chr6	95652266	95652439	+	18.65582	NA	Intergenic	L1PA2|LINE|L1	372975	NR_104136	101927288	Hs.616643	NR_047502		MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_566	chr1	9121464	9121638	+	18.65582	NA	intron (NM_003039, intron 1 of 11)	AluJr|SINE|Alu	8336	NM_001135585	6518	Hs.530003	NM_003039	HPRD:00690	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 (facilitated glucose/fructose transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_90606	chr6	168975536	168975900	+	18.65582	NA	intron (NM_022138, intron 7 of 12)	intron (NM_022138, intron 7 of 12)	133887	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_70608	chr3	127945775	127945971	+	18.65582	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	73560	NM_021937	60678	Hs.477498	NM_021937	HPRD:07409	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_20743	chr11	96012544	96013020	+	18.65582	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-61820	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_57732	chr2	201200523	201200706	+	18.65582	NA	intron (NM_001282743, intron 2 of 11)	Charlie7|DNA|hAT-Charlie	26941	NM_001282744	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_5038	chr1	95267626	95267996	+	18.65582	NA	intron (NR_104131, intron 1 of 4)	MER96|DNA|hAT	18026	NR_104131	101928079	Hs.596857	NR_104131		LINC01057	-	long intergenic non-protein coding RNA 1057	ncRNA
19-PTNLD28-TUMOR_peak_70747	chr3	129574768	129575015	+	18.65582	NA	intron (NM_001128224, intron 1 of 5)	L1MC4a|LINE|L1	24511	NM_001017395	23023	Hs.477547	NM_015008	HPRD:15518	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
19-PTNLD28-TUMOR_peak_68101	chr3	49169842	49170313	+	18.65149	NA	exon (NM_002292, exon 2 of 32)	exon (NM_002292, exon 2 of 32)	522	NM_002292	3913	Hs.439726	NM_002292	HPRD:01034	LAMB2	LAMS|NPHS5	laminin, beta 2 (laminin S)	protein-coding
19-PTNLD28-TUMOR_peak_65802	chr22	43500345	43500558	+	18.65117	NA	Intergenic	LTR13A|LTR|ERVK	-6303	NM_001197	638	Hs.475055	NM_001197	HPRD:04547	BIK	BIP1|BP4|NBK	BCL2-interacting killer (apoptosis-inducing)	protein-coding
19-PTNLD28-TUMOR_peak_62901	chr21	19220684	19220876	+	18.65117	NA	intron (NR_024354, intron 1 of 2)	MLT1H|LTR|ERVL-MaLR	-29077	NM_001100421	54149	Hs.293811	NM_017447	HPRD:10776	C21orf91	C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_97742	chr8	25593278	25593433	+	18.65117	NA	Intergenic	L1PA2|LINE|L1	276842	NM_152562	157313	Hs.33366	NM_152562	HPRD:13014	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
19-PTNLD28-TUMOR_peak_100651	chr8	126186980	126187249	+	18.65117	NA	intron (NM_173685, intron 4 of 7)	intron (NM_173685, intron 4 of 7)	83031	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_56990	chr2	173326853	173326996	+	18.65117	NA	intron (NM_001079818, intron 1 of 24)	intron (NM_001079818, intron 1 of 24)	34610	NM_001079818	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_52795	chr2	54308676	54309118	+	18.65117	NA	Intergenic	Intergenic	-33513	NM_138448	98	Hs.516173	NM_138448	HPRD:00028	ACYP2	ACYM|ACYP	acylphosphatase 2, muscle type	protein-coding
19-PTNLD28-TUMOR_peak_98409	chr8	41559290	41559710	+	18.65117	NA	intron (NM_020476, intron 21 of 41)	CpG	-36696	NM_020480	286	Hs.654438	NM_000037	HPRD:01693	ANK1	ANK|SPH1|SPH2	ankyrin 1, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_2256	chr1	34451368	34451568	+	18.65117	NA	intron (NM_052896, intron 3 of 69)	intron (NM_052896, intron 3 of 69)	116911	NR_038372	402779	Hs.666207	NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100239	chr8	118400773	118400979	+	18.65117	NA	Intergenic	Intergenic	-132076	NM_001282986	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_4001	chr1	62791412	62791616	+	18.64411	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6431	NM_181712	163782	Hs.283398	NM_181712	HPRD:14109	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
19-PTNLD28-TUMOR_peak_26201	chr12	109870303	109870807	+	18.64309	NA	intron (NM_001101421, intron 18 of 30)	intron (NM_001101421, intron 18 of 30)	44031	NM_001101421	283446	Hs.512008	NM_173597	HPRD:08227	MYO1H	-	myosin IH	protein-coding
19-PTNLD28-TUMOR_peak_85354	chr6	11429176	11429410	+	18.64309	NA	Intergenic	Intergenic	-46712	NR_073131	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_25927	chr12	104671213	104671435	+	18.63989	NA	intron (NM_001093771, intron 3 of 16)	AluJb|SINE|Alu	-9136	NM_182742	7296	Hs.654922	NM_003330	HPRD:03068	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_584	chr1	9294569	9294731	+	18.62453	NA	promoter-TSS (NM_004285)	promoter-TSS (NM_004285)	-213	NM_004285	9563	Hs.463511	NM_004285	HPRD:00681	H6PD	CORTRD1|G6PDH|GDH	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding
19-PTNLD28-TUMOR_peak_56214	chr2	149371529	149371761	+	18.62453	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-30915	NM_015630	26122	Hs.23270	NM_015630	HPRD:13274	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_106298	chr9	131464482	131464887	+	18.61993	NA	promoter-TSS (NM_013355)	promoter-TSS (NM_013355)	-118	NM_013355	29941	Hs.300485	NM_013355	HPRD:17856	PKN3	-	protein kinase N3	protein-coding
19-PTNLD28-TUMOR_peak_27049	chr12	125667827	125668103	+	18.61649	NA	Intergenic	Intergenic	118040	NM_023928	65985	Hs.656073	NM_023928	HPRD:12391	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_14562	chr10	81088553	81088691	+	18.61649	NA	Intergenic	Intergenic	-18598	NM_005729	10105	Hs.381072	NM_005729	HPRD:06839	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19-PTNLD28-TUMOR_peak_12719	chr10	30475472	30475806	+	18.61367	NA	Intergenic	Intergenic	-25142	NR_120653	101929279	Hs.559153	NR_120653		LOC101929279	-	uncharacterized LOC101929279	ncRNA
19-PTNLD28-TUMOR_peak_80709	chr5	73934096	73934273	+	18.60874	NA	intron (NM_001256574, intron 1 of 3)	intron (NM_001256574, intron 1 of 3)	-1664	NM_001292004	3074	Hs.69293	NM_000521	HPRD:06043	HEXB	ENC-1AS|HEL-248	hexosaminidase B (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_62996	chr21	28215331	28215511	+	18.60399	NA	intron (NM_006988, intron 1 of 8)	intron (NM_006988, intron 1 of 8)	2307	NM_006988	9510	Hs.643357	NM_006988	HPRD:05530	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif, 1	protein-coding
19-PTNLD28-TUMOR_peak_6002	chr1	120566757	120566916	+	18.60383	NA	intron (NM_024408, intron 2 of 33)	intron (NM_024408, intron 2 of 33)	45481	NM_001200001	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_78623	chr5	956980	957272	+	18.60277	NA	Intergenic	Intergenic	40329	NR_104614	100506688	Hs.532063	NM_001242737		LOC100506688	-	uncharacterized LOC100506688	ncRNA
19-PTNLD28-TUMOR_peak_35968	chr16	4263129	4263269	+	18.60277	NA	intron (NM_001098814, intron 1 of 5)	intron (NM_001098814, intron 1 of 5)	28882	NM_001098814	6345	Hs.10041	NM_001098814	ENSG00000185739	SRL	-	sarcalumenin	protein-coding
19-PTNLD28-TUMOR_peak_89951	chr6	150218456	150218793	+	18.59386	NA	intron (NR_045127, intron 2 of 2)	intron (NR_045127, intron 2 of 2)	-1429	NM_001243328	135250	Hs.511818	NM_139165	HPRD:16466	RAET1E	LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7	retinoic acid early transcript 1E	protein-coding
19-PTNLD28-TUMOR_peak_68342	chr3	52334037	52334445	+	18.59386	NA	Intergenic	Intergenic	-5917	NR_029677	406925		NR_029677	miRBase:MI0000452	MIR135A1	MIRN135-1|MIRN135A1	microRNA 135a-1	ncRNA
19-PTNLD28-TUMOR_peak_18641	chr11	57194900	57195133	+	18.59217	NA	promoter-TSS (NM_199329)	promoter-TSS (NM_199329)	37	NM_017611	29015	Hs.99962	NM_014096	HPRD:15391	SLC43A3	EEG1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43, member 3	protein-coding
19-PTNLD28-TUMOR_peak_23536	chr12	27724510	27724715	+	18.59170	NA	intron (NM_001198915, intron 1 of 26)	intron (NM_001198915, intron 1 of 26)	47567	NM_001198916	8496	Hs.172445	NM_003622	HPRD:04390	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
19-PTNLD28-TUMOR_peak_109244	chrX	115651192	115651372	+	18.59170	NA	Intergenic	L1PA3|LINE|L1	-57088	NM_001017978	203413	Hs.97892	NM_001017978	HPRD:18577	CT83	CXorf61|KK-LC-1|KKLC1	cancer/testis antigen 83	protein-coding
19-PTNLD28-TUMOR_peak_81185	chr5	93769575	93769787	+	18.59170	NA	intron (NM_001145678, intron 14 of 20)	intron (NM_001145678, intron 14 of 20)	184628	NM_173665	285600	Hs.425123	NM_173665	HPRD:11337	KIAA0825	C5orf36	KIAA0825	protein-coding
19-PTNLD28-TUMOR_peak_34044	chr15	66208955	66209211	+	18.59170	NA	intron (NM_032445, intron 17 of 22)	intron (NM_032445, intron 17 of 22)	47286	NM_004663	8766	Hs.321541	NM_004663	HPRD:05715	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_23657	chr12	32028343	32028590	+	18.59170	NA	Intergenic	Intergenic	-83291	NM_001013699	440093	Hs.448697	NM_001013699	HPRD:18443	H3F3C	H3.5	H3 histone, family 3C	protein-coding
19-PTNLD28-TUMOR_peak_43855	chr17	77965545	77965697	+	18.58797	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-40965	NM_001271846	125058	Hs.369819	NM_019020	HPRD:10261	TBC1D16	-	TBC1 domain family, member 16	protein-coding
19-PTNLD28-TUMOR_peak_5374	chr1	109913338	109913512	+	18.58797	NA	intron (NM_002959, intron 1 of 19)	L2c|LINE|L2	22554	NM_001205228	6272	Hs.485195	NM_002959	HPRD:03910	SORT1	Gp95|LDLCQ6|NT3	sortilin 1	protein-coding
19-PTNLD28-TUMOR_peak_20304	chr11	79130270	79130450	+	18.58797	NA	intron (NM_001098816, intron 1 of 33)	intron (NM_001098816, intron 1 of 33)	2910	NR_049841	100847000		NR_049841	miRBase:MI0019133	MIR5579	-	microRNA 5579	ncRNA
19-PTNLD28-TUMOR_peak_34540	chr15	75358424	75358686	+	18.58797	NA	Intergenic	LTR19C|LTR|ERV1	22945	NM_001301105	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_11910	chr10	7306517	7306697	+	18.58307	NA	intron (NM_001018039, intron 7 of 20)	intron (NM_001018039, intron 7 of 20)	144696	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_28573	chr13	79253499	79253741	+	18.57912	NA	Intergenic	L2c|LINE|L2	-20306	NM_024546	79596	Hs.567576	NM_024546	HPRD:12619	RNF219	C13orf7	ring finger protein 219	protein-coding
19-PTNLD28-TUMOR_peak_48387	chr19	29481641	29481980	+	18.57912	NA	Intergenic	Intergenic	-11652	NR_040036	100505835	Hs.176539	NR_040036	ENSG00000267014	LOC100505835	-	uncharacterized LOC100505835	ncRNA
19-PTNLD28-TUMOR_peak_44997	chr18	24040768	24041066	+	18.57912	NA	intron (NM_001258222, intron 3 of 4)	intron (NM_001258222, intron 3 of 4)	37958	NR_110762	100506787	Hs.734746	NR_110762		LOC100506787	-	uncharacterized LOC100506787	ncRNA
19-PTNLD28-TUMOR_peak_28329	chr13	53191350	53191863	+	18.57912	NA	promoter-TSS (NM_001011724)	promoter-TSS (NM_001011724)	1	NM_001011725	144983	Hs.447506	NM_001011724	HPRD:17300	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_30743	chr14	64526958	64527168	+	18.57912	NA	intron (NM_182914, intron 49 of 115)	L1M1|LINE|L1	-153796	NM_182913	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_102634	chr9	32379390	32379527	+	18.57912	NA	Intergenic	Intergenic	-5143	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_88473	chr6	80340848	80341088	+	18.57912	NA	promoter-TSS (NM_031469)	promoter-TSS (NM_031469)	-32	NM_031469	83699	Hs.302772	NM_031469	HPRD:15331	SH3BGRL2	-	SH3 domain binding glutamate-rich protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_46756	chr19	3818566	3818921	+	18.57912	NA	intron (NM_015174, intron 12 of 18)	MIRc|SINE|MIR	-16933	NM_002378	4145	Hs.631845	NM_002378	HPRD:02496	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_63478	chr21	39037671	39038221	+	18.57912	NA	intron (NM_002240, intron 3 of 3)	intron (NM_002240, intron 3 of 3)	245344	NM_001396	1859	Hs.368240	NM_001396	HPRD:09018	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	protein-coding
19-PTNLD28-TUMOR_peak_67128	chr3	23121480	23121640	+	18.57912	NA	Intergenic	Intergenic	-123224	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_79144	chr5	17037974	17038174	+	18.57623	NA	Intergenic	Intergenic	-101689	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_94954	chr7	117854237	117854642	+	18.57623	NA	Intergenic	CpG	-10273	NM_019644	56311	Hs.729340	NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
19-PTNLD28-TUMOR_peak_21279	chr11	114018813	114019040	+	18.57623	NA	intron (NM_001018011, intron 2 of 6)	intron (NM_001018011, intron 2 of 6)	87638	NM_001018011	7704	Hs.591945	NM_006006	HPRD:11762	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_9479	chr1	203840303	203840443	+	18.57623	NA	TTS (NM_003094)	TTS (NM_003094)	9633	NM_003094	6635	Hs.334612	NM_003094		SNRPE	B-raf|HYPT11|SME|Sm-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
19-PTNLD28-TUMOR_peak_58579	chr2	223363899	223364276	+	18.57623	NA	intron (NM_152386, intron 2 of 4)	intron (NM_152386, intron 2 of 4)	74765	NM_152386	130367	Hs.591604	NM_152386		SGPP2	SPP2	sphingosine-1-phosphate phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_24490	chr12	53902454	53902752	+	18.57623	NA	intron (NR_073163, intron 12 of 12)	intron (NR_073163, intron 12 of 12)	-1181	NM_003717	8620	Hs.733076	NM_003717	HPRD:06869	NPFF	FMRFAL	neuropeptide FF-amide peptide precursor	protein-coding
19-PTNLD28-TUMOR_peak_90218	chr6	157626239	157626690	+	18.57497	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	118827	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_53950	chr2	87760299	87760426	+	18.56932	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	5388	NR_024206	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
19-PTNLD28-TUMOR_peak_90921	chr7	2517360	2517513	+	18.56932	NA	Intergenic	Intergenic	-1419	NM_001291784	402635		NM_001291784		GRIFIN	-	galectin-related inter-fiber protein	protein-coding
19-PTNLD28-TUMOR_peak_11621	chr10	976622	976865	+	18.56629	NA	intron (NM_015155, intron 1 of 17)	intron (NM_015155, intron 1 of 17)	902	NM_015155	23185	Hs.159069	NM_015155	HPRD:13787	LARP4B	KIAA0217|LARP5	La ribonucleoprotein domain family, member 4B	protein-coding
19-PTNLD28-TUMOR_peak_68116	chr3	49395190	49395432	+	18.56629	NA	3' UTR (NM_201397, exon 1 of 1)	3' UTR (NM_201397, exon 1 of 1)	480	NM_201397	2876	Hs.76686	NM_000581	HPRD:11749	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_66480	chr3	9835144	9835383	+	18.56244	NA	promoter-TSS (NM_001278270)	promoter-TSS (NM_001278270)	462	NM_001198780	10093	Hs.323342	NM_005718	HPRD:10368	ARPC4	ARC20|P20-ARC	actin related protein 2/3 complex, subunit 4, 20kDa	protein-coding
19-PTNLD28-TUMOR_peak_37977	chr16	56661324	56661525	+	18.56244	NA	TTS (NM_175617)	TTS (NM_175617)	1839	NM_175617	4493	Hs.744893	NM_175617		MT1E	MT1|MTD	metallothionein 1E	protein-coding
19-PTNLD28-TUMOR_peak_68881	chr3	67948041	67948415	+	18.55695	NA	intron (NR_109992, intron 6 of 6)	intron (NR_109992, intron 6 of 6)	-92506	NM_001252216	407738	Hs.655061	NM_213609	HPRD:13294	FAM19A1	TAFA-1|TAFA1	family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	protein-coding
19-PTNLD28-TUMOR_peak_21683	chr11	121262782	121262932	+	18.55695	NA	Intergenic	Intergenic	-60055	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_49737	chr19	49160436	49160715	+	18.55693	NA	intron (NR_004401, intron 1 of 4)	MLT1I|LTR|ERVL-MaLR	-11124	NM_001217	770	Hs.428446	NM_001217	HPRD:05225	CA11	CARPX1	carbonic anhydrase XI	protein-coding
19-PTNLD28-TUMOR_peak_11571	chr1	249228532	249228859	+	18.55693	NA	Intergenic	LTR10C|LTR|ERV1	28253	NM_170725	267002	Hs.602037	NM_170725		PGBD2	-	piggyBac transposable element derived 2	protein-coding
19-PTNLD28-TUMOR_peak_5310	chr1	108922792	108922956	+	18.54840	NA	Intergenic	Intergenic	-70030	NM_001143988	653149	Hs.712226	NM_001143987	ENSG00000186086	NBPF6	-	neuroblastoma breakpoint family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_105295	chr9	111860872	111861212	+	18.54840	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	21183	NM_032012	23731	Hs.308074	NM_032012	HPRD:09866	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
19-PTNLD28-TUMOR_peak_9813	chr1	207490027	207490254	+	18.54840	NA	Intergenic	Intergenic	-4677	NM_000574	1604	Hs.126517	NM_000574	HPRD:00500	CD55	CR|CROM|DAF|TC	CD55 molecule, decay accelerating factor for complement (Cromer blood group)	protein-coding
19-PTNLD28-TUMOR_peak_23984	chr12	47377822	47378001	+	18.54840	NA	Intergenic	L1PA8|LINE|L1	-95475	NM_001281429	91523	Hs.560100	NM_138371	HPRD:17513	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_30980	chr14	69261233	69261437	+	18.54510	NA	promoter-TSS (NM_004926)	promoter-TSS (NM_004926)	-704	NM_001244698	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_97334	chr8	17486087	17486339	+	18.53322	NA	exon (NM_006207, exon 5 of 7)	exon (NM_006207, exon 5 of 7)	52271	NM_006207	5157	Hs.458573	NM_006207	HPRD:05206	PDGFRL	PDGRL|PRLTS	platelet-derived growth factor receptor-like	protein-coding
19-PTNLD28-TUMOR_peak_3387	chr1	48963885	48964061	+	18.53322	NA	Intergenic	Intergenic	-26093	NM_019073	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_386	chr1	6546606	6546769	+	18.52950	NA	promoter-TSS (NM_001042665)	promoter-TSS (NM_001042665)	-673	NM_001042665	57449	Hs.284232	NM_020631	HPRD:11104	PLEKHG5	CMTRIC|DSMA4|GEF720|Syx|Tech	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding
19-PTNLD28-TUMOR_peak_18285	chr11	44950456	44950653	+	18.52950	NA	intron (NM_130783, intron 8 of 8)	intron (NM_130783, intron 8 of 8)	21205	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_83211	chr5	149940622	149940753	+	18.52929	NA	Intergenic	Intergenic	-39955	NM_001166208	11346	Hs.435228	NM_007286	HPRD:12179	SYNPO	-	synaptopodin	protein-coding
19-PTNLD28-TUMOR_peak_91342	chr7	15587310	15587514	+	18.52929	NA	intron (NM_001004320, intron 2 of 12)	L1PA2|LINE|L1	14228	NM_001004320	392636	Hs.670634	NM_001004320	HPRD:13362	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding
19-PTNLD28-TUMOR_peak_103821	chr9	74909986	74910328	+	18.52929	NA	Intergenic	AluJb|SINE|Alu	-10195	NR_110953	100507540	Hs.54957	NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
19-PTNLD28-TUMOR_peak_66742	chr3	13537912	13538074	+	18.52929	NA	intron (NM_001136041, intron 3 of 9)	intron (NM_001136041, intron 3 of 9)	16149	NM_001136041	79885	Hs.744132	NM_024827	HPRD:09146	HDAC11	HD11	histone deacetylase 11	protein-coding
19-PTNLD28-TUMOR_peak_49372	chr19	45681065	45681318	+	18.52425	NA	promoter-TSS (NM_212550)	promoter-TSS (NM_212550)	310	NM_001270891	79090	Hs.466929	NM_024108	HPRD:14503	TRAPPC6A	TRS33	trafficking protein particle complex 6A	protein-coding
19-PTNLD28-TUMOR_peak_54544	chr2	101868374	101868520	+	18.52178	NA	promoter-TSS (NM_017546)	promoter-TSS (NM_017546)	-898	NM_017546	55571	Hs.744080	NM_017546	HPRD:12812	CNOT11	C2orf29	CCR4-NOT transcription complex, subunit 11	protein-coding
19-PTNLD28-TUMOR_peak_86434	chr6	30044245	30044421	+	18.51191	NA	promoter-TSS (NM_025236).2	promoter-TSS (NM_025236).2	-705	NM_025236	80352	Hs.121178	NM_025236	HPRD:09600	RNF39	HZF|HZFW|LIRF	ring finger protein 39	protein-coding
19-PTNLD28-TUMOR_peak_46029	chr18	57702306	57702478	+	18.50974	NA	Intergenic	L1PA2|LINE|L1	135200	NM_021127	5366	Hs.96	NM_021127	HPRD:12002	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
19-PTNLD28-TUMOR_peak_37834	chr16	53114670	53114959	+	18.50783	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	25869	NM_025134	80205	Hs.59159	NM_025134	HPRD:08570	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_49571	chr19	47660965	47661171	+	18.50783	NA	intron (NR_027280, intron 5 of 8)	intron (NR_027280, intron 5 of 8)	26953	NR_027280	10055	Hs.515500	NM_005500	HPRD:18010	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_14597	chr10	81918414	81918729	+	18.50783	NA	intron (NM_001278408, intron 14 of 16)	intron (NM_001278408, intron 14 of 16)	26313	NM_001012973	219348	Hs.204947	NM_001012973		PLAC9	-	placenta-specific 9	protein-coding
19-PTNLD28-TUMOR_peak_49350	chr19	45430445	45430604	+	18.50783	NA	intron (NR_028414, intron 2 of 3)	intron (NR_028414, intron 2 of 3)	464	NR_028414	342	Hs.110675	NR_028412	ENSG00000214855	APOC1P1	-	apolipoprotein C-I pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_89370	chr6	126026424	126026616	+	18.50783	NA	intron (NR_038906, intron 3 of 3)	HERVH-int|LTR|ERV1	31021	NR_038906	643623	Hs.520367	NR_038906	ENSG00000224506	LOC643623	-	uncharacterized LOC643623	ncRNA
19-PTNLD28-TUMOR_peak_88495	chr6	81317881	81318085	+	18.50783	NA	Intergenic	Intergenic	501639	NM_183050	594	Hs.654441	NM_000056	HPRD:02011	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_83915	chr5	171172735	171172897	+	18.50783	NA	Intergenic	Intergenic	-40060	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
19-PTNLD28-TUMOR_peak_39257	chr16	87271726	87271928	+	18.50783	NA	Intergenic	Intergenic	26106	NR_110939	101928708	Hs.585717	NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
19-PTNLD28-TUMOR_peak_47551	chr19	13892428	13892667	+	18.50449	NA	Intergenic	Intergenic	7290	NM_014047	28974	Hs.231616	NM_014047		C19orf53	LYDG10	chromosome 19 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_95495	chr7	134291205	134291384	+	18.50345	NA	Intergenic	L2|LINE|L2	-40237	NM_001724	669	Hs.198365	NM_001724	HPRD:01961	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
19-PTNLD28-TUMOR_peak_2596	chr1	39224573	39224940	+	18.50345	NA	Intergenic	Eulor9A|DNA|DNA	100739	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_13254	chr10	44607754	44607971	+	18.50345	NA	Intergenic	L1PA4|LINE|L1	-180336	NM_001258000	100130539	Hs.694626	NM_001258000		LOC100130539	-	uncharacterized LOC100130539	protein-coding
19-PTNLD28-TUMOR_peak_16339	chr10	134307072	134307254	+	18.50345	NA	Intergenic	Intergenic	-44190	NM_005539	3632	Hs.523360	NM_005539	HPRD:02521	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_30289	chr14	52512012	52512146	+	18.50345	NA	intron (NM_007361, intron 5 of 21)	intron (NM_007361, intron 5 of 21)	23867	NM_007361	22795	Hs.369840	NM_007361	HPRD:05654	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
19-PTNLD28-TUMOR_peak_23723	chr12	34279246	34279589	+	18.50345	NA	Intergenic	HERV15-int|LTR|ERV1	104201	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_12363	chr10	22792839	22792971	+	18.50345	NA	Intergenic	Intergenic	-66047	NR_036533	100499489	Hs.7444	NR_036533		LOC100499489	-	uncharacterized LOC100499489	ncRNA
19-PTNLD28-TUMOR_peak_97363	chr8	18031475	18031909	+	18.50345	NA	intron (NM_001291962, intron 2 of 5)	intron (NM_001291962, intron 2 of 5)	3721	NM_001160179	9	Hs.591847	NM_000662	HPRD:00149	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_86749	chr6	32632619	32632957	+	18.50086	NA	exon (NM_001243961, exon 2 of 6)	exon (NM_001243961, exon 2 of 6)	1678	NM_002123	3119	Hs.409934	NM_002123	HPRD:05054	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
19-PTNLD28-TUMOR_peak_95004	chr7	123168195	123168337	+	18.49799	NA	intron (NM_178827, intron 1 of 12)	L1PA3|LINE|L1	4736	NR_104244	154865	Hs.159650	NM_178827	HPRD:08194	IQUB	-	IQ motif and ubiquitin domain containing	protein-coding
19-PTNLD28-TUMOR_peak_32814	chr15	30538289	30538579	+	18.49799	NA	Intergenic	L1PA3|LINE|L1	50195	NR_026771	26082	Hs.652128	NR_026771	ENSG00000225930	DKFZP434L187	-	uncharacterized LOC26082	ncRNA
19-PTNLD28-TUMOR_peak_7760	chr1	162254936	162255317	+	18.49799	NA	intron (NM_001164757, intron 2 of 9)	intron (NM_001164757, intron 2 of 9)	-57210	NR_030283	693141		NR_030283		MIR556	MIRN556|hsa-mir-556	microRNA 556	ncRNA
19-PTNLD28-TUMOR_peak_71216	chr3	139036572	139036818	+	18.49799	NA	Intergenic	Intergenic	-26166	NM_020191	56945	Hs.745001	NM_020191	HPRD:10430	MRPS22	C3orf5|COXPD5|GIBT|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
19-PTNLD28-TUMOR_peak_73819	chr4	1303029	1303368	+	18.49799	NA	promoter-TSS (NM_001297433)	promoter-TSS (NM_001297433)	-33	NM_001297432	10296	Hs.139896	NM_005882	HPRD:08427	MAEA	EMLP|EMP|GID9|HLC-10|PIG5	macrophage erythroblast attacher	protein-coding
19-PTNLD28-TUMOR_peak_86560	chr6	31006391	31006661	+	18.49759	NA	Intergenic	ERVL-E-int|LTR|ERVL	-14701	NR_003948	285834	Hs.207528	NR_003948	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22	ncRNA
19-PTNLD28-TUMOR_peak_59099	chr2	238499029	238499245	+	18.49759	NA	non-coding (NR_033308, exon 1 of 5)	non-coding (NR_033308, exon 1 of 5)	632	NM_022449	64284	Hs.44278	NM_022449	HPRD:11468	RAB17	-	RAB17, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_25111	chr12	67835611	67835807	+	18.49756	NA	Intergenic	Intergenic	-78153	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
19-PTNLD28-TUMOR_peak_52466	chr2	44314377	44314674	+	18.49756	NA	Intergenic	CpG	-81417	NM_177969	5495	Hs.416769	NM_002706	HPRD:04796	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent, 1B	protein-coding
19-PTNLD28-TUMOR_peak_57015	chr2	174056438	174056637	+	18.49756	NA	intron (NM_016653, intron 7 of 19)	intron (NM_016653, intron 7 of 19)	90227	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MLK7-AS1	-	MLK7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8962	chr1	191175784	191176246	+	18.49756	NA	Intergenic	MER63A|DNA|hAT-Blackjack	581995	NR_033922	440704	Hs.518802	NR_033922	ENSG00000231175	LOC440704	-	uncharacterized LOC440704	ncRNA
19-PTNLD28-TUMOR_peak_14279	chr10	74003739	74004003	+	18.49756	NA	Intergenic	Intergenic	-26979	NR_045564	51008	Hs.500007	NM_015947		ASCC1	ASC1p50|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_102654	chr9	32729450	32729585	+	18.49756	NA	Intergenic	L1PA2|LINE|L1	-53980	NM_212558	401498	Hs.522063	NM_212558		TMEM215	-	transmembrane protein 215	protein-coding
19-PTNLD28-TUMOR_peak_51489	chr2	20874919	20875096	+	18.49756	NA	Intergenic	Intergenic	8583	NM_182828	151449	Hs.447688	NM_182828		GDF7	BMP12	growth differentiation factor 7	protein-coding
19-PTNLD28-TUMOR_peak_12066	chr10	12837401	12837554	+	18.49756	NA	intron (NM_020397, intron 6 of 9)	intron (NM_020397, intron 6 of 9)	-37656	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	ncRNA
19-PTNLD28-TUMOR_peak_54575	chr2	102419761	102419911	+	18.49756	NA	intron (NM_145686, intron 3 of 30)	intron (NM_145686, intron 3 of 30)	105298	NM_145687	9448	Hs.701013	NM_004834	HPRD:05235	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_23844	chr12	42983420	42983682	+	18.49756	NA	promoter-TSS (NM_153026)	promoter-TSS (NM_153026)	21	NM_153026	144165	Hs.524348	NM_153026	HPRD:16341	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_103746	chr9	72871306	72871445	+	18.49164	NA	intron (NR_039990, intron 2 of 3)	LTR19C|LTR|ERV1	2415	NR_039990	100507299	Hs.556816	NR_039990		SMC5-AS1	MAMDC2-AS2	SMC5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_3682	chr1	55365171	55365576	+	18.47933	NA	Intergenic	HERVH-int|LTR|ERV1	-12452	NM_014762	1718	Hs.498727	NM_014762	HPRD:05916	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
19-PTNLD28-TUMOR_peak_37719	chr16	49779436	49779641	+	18.47906	NA	intron (NM_015069, intron 2 of 7)	intron (NM_015069, intron 2 of 7)	77111	NM_015069	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_39280	chr16	87605107	87605394	+	18.47906	NA	Intergenic	Intergenic	-30191	NR_073379	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_62122	chr20	52908867	52909025	+	18.47906	NA	Intergenic	Intergenic	84444	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_37226	chr16	30367061	30367275	+	18.47204	NA	promoter-TSS (NM_006110)	promoter-TSS (NM_006110)	-486	NM_006110	10421	Hs.202677	NM_006110	HPRD:05127	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 (cytoplasmic tail) binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86290	chr6	28048908	28049033	+	18.47204	NA	5' UTR (NM_003447, exon 1 of 4)	5' UTR (NM_003447, exon 1 of 4)	488	NM_003447	7718	Hs.55481	NM_003447	HPRD:02903	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_86358	chr6	28909116	28909500	+	18.46853	NA	Intergenic	Intergenic	-2253	NR_103538	729583	Hs.453549	NR_103538		C6orf100	dJ25J6.5	chromosome 6 open reading frame 100	ncRNA
19-PTNLD28-TUMOR_peak_62640	chr20	62605122	62605457	+	18.46836	NA	TTS (NM_080621)	TTS (NM_080621)	-4066	NM_020713	57473	Hs.740578	NM_020713	HPRD:13840	ZNF512B	GM632	zinc finger protein 512B	protein-coding
19-PTNLD28-TUMOR_peak_101902	chr9	589853	590032	+	18.46836	NA	intron (NM_001256877, intron 2 of 12)	intron (NM_001256877, intron 2 of 12)	85247	NM_015158	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_38421	chr16	68509078	68509269	+	18.46481	NA	Intergenic	Intergenic	-26764	NM_018667	55512	Hs.368421	NM_018667	HPRD:16154	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	protein-coding
19-PTNLD28-TUMOR_peak_100019	chr8	107512090	107512350	+	18.46481	NA	intron (NM_001198532, intron 1 of 15)	intron (NM_001198532, intron 1 of 15)	52068	NM_001198532	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_36357	chr16	12435425	12435654	+	18.46481	NA	intron (NM_032167, intron 15 of 20)	MLT1J2|LTR|ERVL-MaLR	364937	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_94297	chr7	100004478	100004863	+	18.46481	NA	intron (NM_001258008, intron 11 of 15)	intron (NM_001258008, intron 11 of 15)	-21743	NM_001194992	56257	Hs.178011	NM_019606	HPRD:07889	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
19-PTNLD28-TUMOR_peak_34591	chr15	75978650	75978828	+	18.46481	NA	intron (NM_001897, intron 3 of 9)	intron (NM_001897, intron 3 of 9)	26450	NM_001897	1464	Hs.513044	NM_001897	HPRD:03105	CSPG4	HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
19-PTNLD28-TUMOR_peak_93258	chr7	73581500	73581674	+	18.46481	NA	Intergenic	L1MEe|LINE|L1	-7119	NM_031992	7458	Hs.520943	NM_022170	HPRD:11940	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
19-PTNLD28-TUMOR_peak_26261	chr12	110707437	110707663	+	18.46481	NA	Intergenic	Intergenic	-11482	NM_001681	488	Hs.506759	NM_001681	HPRD:00161	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
19-PTNLD28-TUMOR_peak_37667	chr16	48418418	48418751	+	18.46320	NA	intron (NM_003031, intron 1 of 1)	intron (NM_003031, intron 1 of 1)	645	NM_003031	6477	Hs.706828	NM_003031	HPRD:03736	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_31228	chr14	74036325	74036747	+	18.46097	NA	exon (NM_006821, exon 1 of 3)	exon (NM_006821, exon 1 of 3)	773	NM_006821	10965	Hs.446685	NM_006821	HPRD:10173	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_51031	chr2	10116162	10116420	+	18.46002	NA	intron (NM_198182, intron 8 of 15)	intron (NM_198182, intron 8 of 15)	24499	NM_198182	29841	Hs.418493	NM_198182	HPRD:18176	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_35603	chr16	318731	319006	+	18.46002	NA	non-coding (NR_104317, exon 13 of 14)	non-coding (NR_104317, exon 13 of 14)	7075	NM_183337	8786	Hs.65756	NM_003834	HPRD:04872	RGS11	RS11	regulator of G-protein signaling 11	protein-coding
19-PTNLD28-TUMOR_peak_101546	chr8	143705482	143705622	+	18.45694	NA	Intergenic	Intergenic	-9719	NM_015193	23237	Hs.40888	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_64331	chr22	19166991	19167173	+	18.45694	NA	promoter-TSS (NM_005984)	promoter-TSS (NM_005984)	-706	NR_046298	6576	Hs.111024	NM_005984	HPRD:01832	SLC25A1	CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_65339	chr22	36781990	36782721	+	18.44586	NA	intron (NM_002473, intron 1 of 40)	L2a|LINE|L2	1708	NM_002473	4627	Hs.474751	NM_002473	HPRD:01177	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin, heavy chain 9, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_88042	chr6	53637152	53637332	+	18.43890	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-22536	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_82643	chr5	139975909	139976143	+	18.43890	NA	Intergenic	MER21C|LTR|ERVL	31606	NM_080670	113829	Hs.406840	NM_080670	HPRD:11574	SLC35A4	-	solute carrier family 35, member A4	protein-coding
19-PTNLD28-TUMOR_peak_101049	chr8	132871756	132872033	+	18.43757	NA	Intergenic	Intergenic	-44462	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_11576	chr10	81813	82008	+	18.43729	NA	Intergenic	L1PA3|LINE|L1	13268	NM_177987	347688	Hs.532659	NM_177987		TUBB8	bA631M21.2	tubulin, beta 8 class VIII	protein-coding
19-PTNLD28-TUMOR_peak_67150	chr3	23691970	23692172	+	18.43729	NA	Intergenic	Intergenic	-155313	NM_182666	7324	Hs.164853	NM_003341	HPRD:04225	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
19-PTNLD28-TUMOR_peak_40992	chr17	31258742	31258924	+	18.43729	NA	intron (NM_001033504, intron 2 of 6)	intron (NM_001033504, intron 2 of 6)	3905	NM_001033504	26022	Hs.3447	NM_015544	HPRD:13171	TMEM98	-	transmembrane protein 98	protein-coding
19-PTNLD28-TUMOR_peak_14082	chr10	71662972	71663258	+	18.43729	NA	intron (NM_080800, intron 14 of 37)	intron (NM_080800, intron 14 of 37)	101471	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_35796	chr16	2346804	2347050	+	18.43729	NA	intron (NM_001089, intron 17 of 32)	intron (NM_001089, intron 17 of 32)	22306	NR_039868	100616241		NR_039868	miRBase:MI0017352	MIR4717	-	microRNA 4717	ncRNA
19-PTNLD28-TUMOR_peak_37387	chr16	32007724	32007960	+	18.42466	NA	Intergenic	Intergenic	122763	NM_001265588	10308	Hs.460645	NM_003414	HPRD:06883	ZNF267	HZF2	zinc finger protein 267	protein-coding
19-PTNLD28-TUMOR_peak_60634	chr20	32859810	32860075	+	18.42021	NA	Intergenic	Intergenic	11771	NM_001672	434	Hs.659995	NM_001672	HPRD:02562	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
19-PTNLD28-TUMOR_peak_34486	chr15	74677547	74677718	+	18.42021	NA	Intergenic	Intergenic	-17551	NM_000781	1583	Hs.303980	NM_000781	HPRD:00326	CYP11A1	CYP11A|CYPXIA1|P450SCC	cytochrome P450, family 11, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_100090	chr8	110374508	110374916	+	18.41895	NA	promoter-TSS (NM_177531)	promoter-TSS (NM_177531)	6	NM_177531	93035	Hs.170128	NM_177531	HPRD:09703	PKHD1L1	PKHDL1	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_94056	chr7	95914113	95914447	+	18.41895	NA	intron (NR_027662, intron 2 of 16)	intron (NR_027662, intron 2 of 16)	37179	NM_014251	10165	Hs.489190	NM_014251	HPRD:04837	SLC25A13	ARALAR2|CITRIN|CTLN2	solute carrier family 25 (aspartate/glutamate carrier), member 13	protein-coding
19-PTNLD28-TUMOR_peak_96525	chr7	153206944	153207129	+	18.41895	NA	Intergenic	L4|LINE|RTE	-97717	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_98144	chr8	36251401	36251700	+	18.41895	NA	Intergenic	L1PA2|LINE|L1	-390292	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_102670	chr9	33081309	33081552	+	18.41895	NA	Intergenic	Intergenic	-4716	NM_018225	55234	Hs.655351	NM_018225	HPRD:11588	SMU1	BWD|SMU-1|fSAP57	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_80342	chr5	66505074	66505353	+	18.41895	NA	Intergenic	Intergenic	-12596	NM_005582	4064	Hs.87205	NM_005582	HPRD:03749	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
19-PTNLD28-TUMOR_peak_51690	chr2	26944233	26944441	+	18.41895	NA	intron (NM_002246, intron 1 of 1)	intron (NM_002246, intron 1 of 1)	28756	NM_002246	3777	Hs.645288	NM_002246		KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium channel, subfamily K, member 3	protein-coding
19-PTNLD28-TUMOR_peak_56390	chr2	153947262	153947862	+	18.41895	NA	Intergenic	L1PB1|LINE|L1	373155	NR_024526	151188	Hs.643580	NM_152522	HPRD:12485	ARL6IP6	AIP-6|PFAAP1	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
19-PTNLD28-TUMOR_peak_29612	chr14	24868164	24868314	+	18.41856	NA	5' UTR (NM_025081, exon 1 of 9)	5' UTR (NM_025081, exon 1 of 9)	247	NM_025081	57523	Hs.288348	NM_025081	ENSG00000205978	NYNRIN	CGIN1|KIAA1305	NYN domain and retroviral integrase containing	protein-coding
19-PTNLD28-TUMOR_peak_42679	chr17	57947499	57947725	+	18.41856	NA	intron (NM_001193609, intron 5 of 7)	AluSz|SINE|Alu	22694	NM_001193612	51174	Hs.463638	NM_016261	HPRD:06297	TUBD1	TUBD	tubulin, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_59097	chr2	238483937	238484111	+	18.41856	NA	intron (NM_022449, intron 5 of 5)	intron (NM_022449, intron 5 of 5)	8807	NM_015893	51052	Hs.247710	NM_015893	HPRD:04046	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
19-PTNLD28-TUMOR_peak_44050	chr17	80022432	80022827	+	18.41856	NA	intron (NM_022156, intron 2 of 13)	intron (NM_022156, intron 2 of 13)	1068	NM_022156	64118	Hs.514599	NM_022156		DUS1L	DUS1|PP3111	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_97760	chr8	26150557	26150757	+	18.41767	NA	promoter-TSS (NM_001177591)	promoter-TSS (NM_001177591)	-75	NM_001177591	5520	Hs.146339	NM_002717	HPRD:09223	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
19-PTNLD28-TUMOR_peak_100971	chr8	131370719	131370889	+	18.41767	NA	intron (NM_018482, intron 2 of 29)	CpG-26004	-62025	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_70547	chr3	127263179	127263324	+	18.41767	NA	Intergenic	Intergenic	-6628	NR_125397	101927149	Hs.407798	NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
19-PTNLD28-TUMOR_peak_9241	chr1	201507933	201508587	+	18.41767	NA	Intergenic	CpG	19228	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_40547	chr17	19220189	19220383	+	18.41699	NA	intron (NM_014964, intron 7 of 10)	intron (NM_014964, intron 7 of 10)	-10712	NR_048576	100874018	Hs.621672	NR_048576	ENSG00000235397	EPN2-AS1	-	EPN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57623	chr2	197344185	197344489	+	18.41649	NA	intron (NM_020760, intron 1 of 28)	intron (NM_020760, intron 1 of 28)	112998	NM_020760	57520	Hs.654742	NM_020760	HPRD:17099	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_104247	chr9	87668176	87668379	+	18.41649	NA	Intergenic	Intergenic	382985	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_39673	chr17	2040708	2040921	+	18.41649	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-48759	NM_001282326	23293	Hs.448342	NM_017575	HPRD:06502	SMG6	C17orf31|EST1A|SMG-6|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_14523	chr10	80477061	80477287	+	18.41649	NA	Intergenic	Intergenic	350031	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14707	chr10	87850988	87851386	+	18.41649	NA	intron (NM_017551, intron 4 of 15)	L1PB1|LINE|L1	173358	NR_029907	442911		NR_029907		MIR346	MIRN346|hsa-mir-346|miR-346|miRNA346	microRNA 346	ncRNA
19-PTNLD28-TUMOR_peak_18328	chr11	45479231	45479420	+	18.41649	NA	Intergenic	Intergenic	86377	NR_122071	399886	Hs.559970	NR_122071	HPRD:13453	LOC399886	-	uncharacterized LOC399886	ncRNA
19-PTNLD28-TUMOR_peak_5802	chr1	116861642	116861860	+	18.41649	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-54044	NM_000701	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_5966	chr1	120156496	120156660	+	18.40108	NA	Intergenic	Intergenic	-14664	NR_036540	644242	Hs.515383	NR_036540	ENSG00000260941	LINC00622	-	long intergenic non-protein coding RNA 622	ncRNA
19-PTNLD28-TUMOR_peak_23972	chr12	47057213	47057383	+	18.40108	NA	Intergenic	L2a|LINE|L2	162482	NM_001143824	55089	Hs.446077	NM_018018	HPRD:12159	SLC38A4	ATA3|NAT3|PAAT	solute carrier family 38, member 4	protein-coding
19-PTNLD28-TUMOR_peak_18055	chr11	35325655	35325867	+	18.40108	NA	intron (NM_004171, intron 5 of 10)	intron (NM_004171, intron 5 of 10)	115344	NM_004171	6506	Hs.502338	NM_004171	HPRD:02625	SLC1A2	EAAT2|GLT-1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_82186	chr5	133328840	133329119	+	18.40108	NA	intron (NM_003374, intron 1 of 8)	L2b|LINE|L2	11678	NR_036624	7416	Hs.519320	NM_003374	HPRD:05137	VDAC1	PORIN|VDAC-1	voltage-dependent anion channel 1	protein-coding
19-PTNLD28-TUMOR_peak_61662	chr20	47937049	47937267	+	18.40108	NA	Intergenic	MIRb|SINE|MIR	39938	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
19-PTNLD28-TUMOR_peak_61531	chr20	46292573	46292912	+	18.40108	NA	intron (NM_198596, intron 15 of 20)	intron (NM_198596, intron 15 of 20)	122066	NM_018837	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_23065	chr12	12030933	12031416	+	18.40108	NA	intron (NM_001987, intron 5 of 7)	intron (NM_001987, intron 5 of 7)	47933	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_7075	chr1	154452425	154452556	+	18.39601	NA	3' UTR (NM_001010846, exon 6 of 6)	3' UTR (NM_001010846, exon 6 of 6)	22036	NM_001010846	126669	Hs.591481	NM_001010846	HPRD:17293	SHE	-	Src homology 2 domain containing E	protein-coding
19-PTNLD28-TUMOR_peak_94358	chr7	100486940	100487326	+	18.39448	NA	TTS (NM_001282449)	TTS (NM_001282449)	206	NM_001015072	402682	Hs.534845	NM_001015072	HPRD:18630	UFSP1	UFSP	UFM1-specific peptidase 1 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_10781	chr1	230443100	230443345	+	18.38418	NA	Intergenic	Intergenic	118452	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_63838	chr21	44615363	44615557	+	18.38268	NA	Intergenic	Intergenic	26342	NM_000394	1409	Hs.184085	NM_000394	HPRD:00427	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
19-PTNLD28-TUMOR_peak_61860	chr20	49356393	49356535	+	18.38206	NA	intron (NM_032521, intron 2 of 2)	intron (NM_032521, intron 2 of 2)	8383	NM_032521	84612	Hs.589848	NM_032521	HPRD:18703	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_61652	chr20	47836283	47836449	+	18.38154	NA	intron (NM_017895, intron 1 of 20)	intron (NM_017895, intron 1 of 20)	534	NM_017895	55661	Hs.65234	NM_017895	HPRD:10859	DDX27	DRS1|Drs1p|PP3241|RHLP|dJ686N3.1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding
19-PTNLD28-TUMOR_peak_94128	chr7	97756189	97756340	+	18.38063	NA	intron (NM_014916, intron 1 of 13)	intron (NM_014916, intron 1 of 13)	20067	NM_014916	22853	Hs.444179	NM_014916	HPRD:13994	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk	lemur tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_25493	chr12	85711934	85712208	+	18.38063	NA	Intergenic	L1PA2|LINE|L1	38035	NM_006982	8092	Hs.41683	NM_006982	HPRD:03316	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_63155	chr21	33205523	33205706	+	18.38063	NA	Intergenic	MER5A|DNA|hAT-Charlie	-40014	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_16739	chr11	3425520	3425724	+	18.37569	NA	intron (NR_024248, intron 7 of 10)	intron (NR_024248, intron 7 of 10)	-12477	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_2092	chr1	32408198	32408407	+	18.37205	NA	Intergenic	Intergenic	-4314	NM_080391	8073	Hs.470477	NM_003479	HPRD:03348	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
19-PTNLD28-TUMOR_peak_3837	chr1	59434125	59434616	+	18.37116	NA	Intergenic	Intergenic	-51778	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
19-PTNLD28-TUMOR_peak_38357	chr16	67571239	67571437	+	18.37116	NA	promoter-TSS (NM_001193524)	promoter-TSS (NM_001193524)	-27	NM_001193524	79567	Hs.152717	NM_024519	HPRD:08586	FAM65A	-	family with sequence similarity 65, member A	protein-coding
19-PTNLD28-TUMOR_peak_80909	chr5	79351667	79351962	+	18.37116	NA	exon (NM_003248, exon 3 of 22)	exon (NM_003248, exon 3 of 22)	20644	NM_003248	7060	Hs.211426	NM_003248	HPRD:02836	THBS4	TSP4	thrombospondin 4	protein-coding
19-PTNLD28-TUMOR_peak_2780	chr1	41314348	41314474	+	18.36881	NA	Intergenic	Intergenic	13607	NM_133467	163732	Hs.355820	NM_133467	HPRD:06011	CITED4	-	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding
19-PTNLD28-TUMOR_peak_73668	chr3	197331099	197331333	+	18.36881	NA	Intergenic	Intergenic	23536	NR_003266	220729	Hs.478854	NR_003266	ENSG00000214135	LOC220729	-	succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74398	chr4	8994694	8995187	+	18.36881	NA	Intergenic	LTR12C|LTR|ERV1	43463	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_108264	chrX	48858732	48859046	+	18.36739	NA	promoter-TSS (NM_020137)	promoter-TSS (NM_020137)	-214	NM_020137	56850	Hs.109929	NM_020137	HPRD:02325	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101905	chr9	614501	614710	+	18.36739	NA	intron (NM_001256877, intron 2 of 12)	MER20B|DNA|hAT-Charlie	-92201	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_45055	chr18	26274757	26275050	+	18.36739	NA	Intergenic	HERVH-int|LTR|ERV1	-517458	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_4965	chr1	94304977	94305180	+	18.36739	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-7310	NR_030621	100126348		NR_030621	miRBase:MI0005567	MIR760	MIRN760|hsa-mir-760	microRNA 760	ncRNA
19-PTNLD28-TUMOR_peak_38819	chr16	77448759	77449056	+	18.36739	NA	intron (NM_199355, intron 3 of 22)	intron (NM_199355, intron 3 of 22)	20104	NM_199355	170692	Hs.188746	NM_139054	HPRD:06333	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif, 18	protein-coding
19-PTNLD28-TUMOR_peak_16182	chr10	127513433	127513615	+	18.36739	NA	intron (NM_078469, intron 1 of 6)	intron (NM_078469, intron 1 of 6)	1420	NM_078468	56647	Hs.370292	NM_016567	HPRD:16542	BCCIP	TOK-1|TOK1	BRCA2 and CDKN1A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_55312	chr2	120460512	120460645	+	18.36739	NA	Intergenic	Intergenic	23835	NM_001105199	80775	Hs.439991	NM_030577	HPRD:14409	TMEM177	-	transmembrane protein 177	protein-coding
19-PTNLD28-TUMOR_peak_70588	chr3	127678857	127679014	+	18.36739	NA	intron (NM_207335, intron 3 of 4)	intron (NM_207335, intron 3 of 4)	37033	NM_207335	166348	Hs.132087	NM_207335	HPRD:17001	KBTBD12	KLHDC6	kelch repeat and BTB (POZ) domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_70094	chr3	120217873	120218077	+	18.36739	NA	Intergenic	Intergenic	-48057	NM_007085	11167	Hs.269512	NM_007085		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_49410	chr19	46051576	46051772	+	18.36739	NA	3' UTR (NM_025136, exon 2 of 2)	3' UTR (NM_025136, exon 2 of 2)	36448	NM_001017989	80207	Hs.466945	NM_025136	HPRD:05956	OPA3	MGA3	optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	protein-coding
19-PTNLD28-TUMOR_peak_108310	chrX	49760040	49760205	+	18.36739	NA	intron (NM_001127898, intron 3 of 14)	intron (NM_001127898, intron 3 of 14)	-7632	NR_030241	693124		NR_030241		MIR532	MIRN532|hsa-mir-532	microRNA 532	ncRNA
19-PTNLD28-TUMOR_peak_62880	chr21	18886540	18886709	+	18.36407	NA	intron (NM_001338, intron 1 of 6)	intron (NM_001338, intron 1 of 6)	1400	NM_001207063	1525	Hs.627078	NM_001338	HPRD:11804	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
19-PTNLD28-TUMOR_peak_64467	chr22	20862090	20862370	+	18.35007	NA	promoter-TSS (NM_001293237)	promoter-TSS (NM_001293237)	-105	NM_001293237	51586	Hs.517421	NM_015889	HPRD:12117	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
19-PTNLD28-TUMOR_peak_78534	chr4	191033508	191033776	+	18.35007	NA	Intergenic	HERVK-int|LTR|ERVK	47985	NR_121644	100419743		NR_121644		DBET	DBE-T	D4Z4 binding element transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_84833	chr6	2912016	2912217	+	18.34152	NA	Intergenic	Intergenic	-8570	NM_004155	5272	Hs.104879	NM_004155	HPRD:03480	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin peptidase inhibitor, clade B (ovalbumin), member 9	protein-coding
19-PTNLD28-TUMOR_peak_5070	chr1	95763212	95763682	+	18.34152	NA	Intergenic	L1PA3|LINE|L1	63736	NM_001278247	25950	Hs.483512	NM_015485	HPRD:11527	RWDD3	RSUME	RWD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_46161	chr18	64794700	64794874	+	18.34152	NA	Intergenic	SVA_D|Other|Other	45966	NR_049809	100847002		NR_049809	miRBase:MI0017879	MIR5011	-	microRNA 5011	ncRNA
19-PTNLD28-TUMOR_peak_20857	chr11	102261546	102261667	+	18.34152	NA	Intergenic	L1P4d|LINE|L1	43501	NM_001256163	329	Hs.696238	NM_001166	HPRD:03419	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_41972	chr17	45741801	45741977	+	18.34152	NA	intron (NM_001276453, intron 7 of 20)	intron (NM_001276453, intron 7 of 20)	13327	NM_001276453	3837	Hs.532793	NM_002265		KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin (importin) beta 1	protein-coding
19-PTNLD28-TUMOR_peak_26722	chr12	121548145	121548361	+	18.34152	NA	Intergenic	Intergenic	-22369	NR_033953	5027	Hs.729169	NM_002562	HPRD:03977	P2RX7	P2X7	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding
19-PTNLD28-TUMOR_peak_54607	chr2	102952899	102953202	+	18.34152	NA	promoter-TSS (NM_003856)	promoter-TSS (NM_003856)	-660	NM_003856	9173	Hs.66	NM_003856	HPRD:03123	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_42535	chr17	56018108	56018487	+	18.33798	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	14387	NM_001271875	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_2352	chr1	35917761	35918023	+	18.33740	NA	intron (NM_024874, intron 12 of 20)	intron (NM_024874, intron 12 of 20)	105145	NM_024874	79932	Hs.456507	NM_024874	HPRD:11164	KIAA0319L	-	KIAA0319-like	protein-coding
19-PTNLD28-TUMOR_peak_10197	chr1	221898354	221898559	+	18.33740	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	11786	NR_111939	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_25810	chr12	101381576	101382284	+	18.33740	NA	intron (NM_001286616, intron 7 of 26)	intron (NM_001286616, intron 7 of 26)	86506	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_83083	chr5	148452880	148453075	+	18.33740	NA	intron (NR_122044, intron 2 of 2)	intron (NR_122044, intron 2 of 2)	10097	NR_122044	255187	Hs.149321	NR_122044		LOC255187	-	uncharacterized LOC255187	ncRNA
19-PTNLD28-TUMOR_peak_45968	chr18	56666119	56666411	+	18.33740	NA	Intergenic	MIR|SINE|MIR	-36706	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109049	chrX	103675530	103675735	+	18.33107	NA	Intergenic	L2b|LINE|L2	-135364	NM_017416	26280	Hs.675519	NM_017416	HPRD:02231	IL1RAPL2	IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1	interleukin 1 receptor accessory protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_53087	chr2	64872223	64872430	+	18.33107	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	8720	NM_014755	9792	Hs.591569	NM_014755	HPRD:18040	SERTAD2	Sei-2|TRIP-Br2	SERTA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_75673	chr4	74982806	74983140	+	18.32961	NA	Intergenic	Intergenic	-17976	NM_002089	2920	Hs.75765	NM_002089	HPRD:00741	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	chemokine (C-X-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_43282	chr17	72033468	72033738	+	18.32961	NA	Intergenic	Intergenic	-166192	NM_000999	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_101555	chr8	143791644	143791952	+	18.32961	NA	intron (NR_038925, intron 1 of 2)	LTR13|LTR|ERVK	10269	NM_001160355	54742	Hs.69517	NM_017527		LY6K	CT97|HSJ001348|ly-6K	lymphocyte antigen 6 complex, locus K	protein-coding
19-PTNLD28-TUMOR_peak_17585	chr11	19595221	19595539	+	18.32961	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	-1477	NR_039706	100616118		NR_039706		MIR4486	-	microRNA 4486	ncRNA
19-PTNLD28-TUMOR_peak_16592	chr11	1650148	1650322	+	18.32961	NA	promoter-TSS (NM_001001480)	promoter-TSS (NM_001001480)	-798	NM_001001480	439915	Hs.653467	NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
19-PTNLD28-TUMOR_peak_77473	chr4	147585217	147585362	+	18.32961	NA	Intergenic	L1PA3|LINE|L1	25244	NM_004575	5458	Hs.266	NM_004575	HPRD:00220	POU4F2	BRN3.2|BRN3B|Brn-3b	POU class 4 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_41538	chr17	40679382	40679504	+	18.32961	NA	Intergenic	Intergenic	-8508	NM_000263	4669	Hs.50727	NM_000263	HPRD:02017	NAGLU	MPS-IIIB|MPS3B|NAG|UFHSD	N-acetylglucosaminidase, alpha	protein-coding
19-PTNLD28-TUMOR_peak_57974	chr2	205689799	205690066	+	18.32961	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	279416	NM_057177	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_100351	chr8	120374575	120374752	+	18.32961	NA	Intergenic	Intergenic	-53889	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_85585	chr6	15401009	15401181	+	18.32961	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	152009	NM_001267040	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_34676	chr15	78219153	78219287	+	18.32961	NA	promoter-TSS (NR_027024)	promoter-TSS (NR_027024)	-32	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_435	chr1	7418522	7418740	+	18.32961	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-412698	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_78733	chr5	4585179	4585362	+	18.32961	NA	Intergenic	Intergenic	-188324	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_19979	chr11	73675441	73675666	+	18.32431	NA	intron (NM_153614, intron 3 of 7)	intron (NM_153614, intron 3 of 7)	14189	NM_153614	374407	Hs.567888	NM_153614	HPRD:15573	DNAJB13	RSPH16A|TSARG5|TSARG6	DnaJ (Hsp40) homolog, subfamily B, member 13	protein-coding
19-PTNLD28-TUMOR_peak_4668	chr1	87223230	87223443	+	18.32266	NA	Intergenic	Intergenic	53083	NM_001206653	51100	Hs.136309	NM_016009	HPRD:15333	SH3GLB1	Bif-1|PPP1R70|dJ612B15.2	SH3-domain GRB2-like endophilin B1	protein-coding
19-PTNLD28-TUMOR_peak_48835	chr19	38146081	38147024	+	18.31924	NA	promoter-TSS (NM_014898)	promoter-TSS (NM_014898)	-239	NM_014898	22835	Hs.716719	NM_014898	HPRD:17201	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_38101	chr16	58034627	58034882	+	18.31277	NA	promoter-TSS (NM_001195302)	promoter-TSS (NM_001195302)	-523	NM_001204911	79650	Hs.408702	NM_024598	HPRD:07815	USB1	C16orf57|HVSL1|Mpn1|PN|hUsb1	U6 snRNA biogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_107299	chrUn_gl000232	27069	27220	+	18.31277	NA	NA	LTR41B|LTR|ERVL	NA	NA								
19-PTNLD28-TUMOR_peak_129	chr1	1227273	1227456	+	18.30790	NA	TTS (NM_001130413)	TTS (NM_001130413)	4186	NR_106784	102465434		NR_106784		MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
19-PTNLD28-TUMOR_peak_55412	chr2	121762653	121762898	+	18.29771	NA	Intergenic	L2a|LINE|L2	207908	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_3364	chr1	48492031	48492292	+	18.29771	NA	Intergenic	Intergenic	-29599	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_11747	chr10	3977335	3977648	+	18.29771	NA	Intergenic	Intergenic	-55861	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
19-PTNLD28-TUMOR_peak_13334	chr10	46526996	46527196	+	18.29771	NA	Intergenic	Intergenic	92962	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_33617	chr15	52860970	52861448	+	18.29771	NA	promoter-TSS (NM_006628)	promoter-TSS (NM_006628)	4	NM_006628	10776	Hs.512908	NM_006628	HPRD:09264	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP-regulated phosphoprotein, 19kDa	protein-coding
19-PTNLD28-TUMOR_peak_77196	chr4	140484706	140484924	+	18.29771	NA	Intergenic	Intergenic	-7238	NM_030648	80854	Hs.480792	NM_030648	HPRD:16226	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing (lysine methyltransferase) 7	protein-coding
19-PTNLD28-TUMOR_peak_80687	chr5	73569067	73569276	+	18.28807	NA	Intergenic	Intergenic	34979	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_43752	chr17	76386541	76386772	+	18.28456	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	11957	NM_024419	9489	Hs.654671	NM_024419	HPRD:17841	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_70363	chr3	124776126	124776264	+	18.28456	NA	Intergenic	Intergenic	-1393	NM_020733	57493	Hs.477420	NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_97173	chr8	11657845	11658147	+	18.28224	NA	intron (NM_001287744, intron 1 of 7)	LTR10C|LTR|ERV1	-2124	NM_001287745	2222	Hs.593928	NM_004462	HPRD:01694	FDFT1	DGPT|ERG9|SQS|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_86110	chr6	26215812	26216227	+	18.28166	NA	TTS (NM_003518)	TTS (NM_003518)	853	NM_003518	8339	Hs.591809	NM_003518	HPRD:11897	HIST1H2BG	H2B.1A|H2B/a|H2BFA|dJ221C16.8	histone cluster 1, H2bg	protein-coding
19-PTNLD28-TUMOR_peak_21939	chr11	126153339	126153667	+	18.27828	NA	intron (NM_001039661, intron 1 of 5)	intron (NM_001039661, intron 1 of 5)	521	NM_148910	114609	Hs.537126	NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	toll-interleukin 1 receptor (TIR) domain containing adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_14603	chr10	81966925	81967248	+	18.27678	NA	promoter-TSS (NR_038464)	promoter-TSS (NR_038464)	-380	NR_038464	439990	Hs.365566	NR_038464	ENSG00000237523	LINC00857	-	long intergenic non-protein coding RNA 857	ncRNA
19-PTNLD28-TUMOR_peak_31590	chr14	89017752	89017985	+	18.27426	NA	intron (NM_007039, intron 1 of 18)	CpG	3255	NM_007039	11099	Hs.437040	NM_007039	HPRD:04468	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding
19-PTNLD28-TUMOR_peak_36049	chr16	4962015	4962265	+	18.27426	NA	intron (NM_002705, intron 1 of 21)	L1MB7|LINE|L1	24996	NM_002705	5493	Hs.192233	NM_002705	HPRD:04187	PPL	-	periplakin	protein-coding
19-PTNLD28-TUMOR_peak_64283	chr22	18632460	18632970	+	18.27426	NA	promoter-TSS (NM_017414)	promoter-TSS (NM_017414)	-43	NM_017414	11274	Hs.38260	NM_017414	HPRD:06136	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding
19-PTNLD28-TUMOR_peak_26522	chr12	117626852	117627030	+	18.26984	NA	intron (NM_033624, intron 2 of 11)	intron (NM_033624, intron 2 of 11)	1359	NM_033624	23014	Hs.740376	NM_015002	HPRD:09948	FBXO21	FBX21	F-box protein 21	protein-coding
19-PTNLD28-TUMOR_peak_2802	chr1	41511414	41511773	+	18.26984	NA	intron (NM_001031694, intron 12 of 15)	intron (NM_001031694, intron 12 of 15)	-24166	NM_001168247	200172	Hs.194609	NM_144990	HPRD:08044	SLFNL1	-	schlafen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_64530	chr22	21570681	21570972	+	18.26984	NA	Intergenic	Intergenic	49634	NR_108107	642633		NM_201565		FAM230B	-	family with sequence similarity 230, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_27716	chr13	31407123	31407318	+	18.26483	NA	Intergenic	Intergenic	29877	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
19-PTNLD28-TUMOR_peak_44360	chr18	3711061	3711260	+	18.26483	NA	intron (NM_001242766, intron 4 of 10)	intron (NM_001242766, intron 4 of 10)	107425	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_7014	chr1	153740906	153741156	+	18.26483	NA	intron (NM_023015, intron 21 of 29)	intron (NM_023015, intron 21 of 29)	-6737	NM_024330	11000	Hs.438723	NM_024330	HPRD:11967	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_109045	chrX	103563478	103563653	+	18.26483	NA	Intergenic	MIR|SINE|MIR	-63966	NM_153448	80712	Hs.223782	NM_153448	HPRD:06503	ESX1	ESX1L|ESXR1	ESX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_8843	chr1	184986485	184986717	+	18.26483	NA	Intergenic	MER72B|LTR|ERV1	-27950	NM_007212	6045	Hs.591490	NM_007212	HPRD:07028	RNF2	BAP-1|BAP1|DING|HIPI3|RING1B|RING2	ring finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_97920	chr8	28474538	28474804	+	18.26483	NA	Intergenic	Intergenic	-84319	NR_073469	2137	Hs.491354	NM_001440	HPRD:09306	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin-like glycosyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_102145	chr9	7799750	7799931	+	18.26483	NA	promoter-TSS (NM_033428)	promoter-TSS (NM_033428)	-41	NM_033428	90871	Hs.7517	NM_033428	HPRD:12939	TMEM261	C9orf123	transmembrane protein 261	protein-coding
19-PTNLD28-TUMOR_peak_63235	chr21	34671785	34672033	+	18.26483	NA	Intergenic	Intergenic	-25305	NM_000629	3454	Hs.529400	NM_000629	HPRD:00126	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC	interferon (alpha, beta and omega) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_91813	chr7	29724386	29725083	+	18.26483	NA	promoter-TSS (NR_036482)	promoter-TSS (NR_036482)	20	NR_024278	646762	Hs.30579	NR_024278		LOC646762	-	uncharacterized LOC646762	ncRNA
19-PTNLD28-TUMOR_peak_23800	chr12	41091603	41091837	+	18.26483	NA	intron (NM_001843, intron 1 of 23)	intron (NM_001843, intron 1 of 23)	5476	NM_001843	1272	Hs.143434	NM_001843	HPRD:07189	CNTN1	F3|GP135|MYPCN	contactin 1	protein-coding
19-PTNLD28-TUMOR_peak_43886	chr17	78244786	78244959	+	18.26483	NA	intron (NM_020954, intron 2 of 16)	intron (NM_020954, intron 2 of 16)	10212	NM_020954	57674	Hs.195642	NM_020914	HPRD:10716	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_81729	chr5	118623583	118623757	+	18.26483	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	19283	NM_001286815	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_58017	chr2	206809309	206809629	+	18.26483	NA	Intergenic	Intergenic	141437	NM_017759	54891	Hs.445036	NM_017759	HPRD:07894	INO80D	-	INO80 complex subunit D	protein-coding
19-PTNLD28-TUMOR_peak_16156	chr10	126889641	126889989	+	18.26483	NA	Intergenic	Intergenic	-40191	NM_001083914	1488	Hs.501345	NM_001329	HPRD:04016	CTBP2	-	C-terminal binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_57951	chr2	205015580	205015787	+	18.26483	NA	Intergenic	LTR88a|LTR|Gypsy?	214212	NM_012092	29851	Hs.56247	NM_012092	HPRD:09196	ICOS	AILIM|CD278|CVID1	inducible T-cell co-stimulator	protein-coding
19-PTNLD28-TUMOR_peak_50594	chr19	59070894	59071107	+	18.26176	NA	promoter-TSS (NM_003969)	promoter-TSS (NM_003969)	447	NR_027334	100131691	Hs.743767	NR_027334	ENSG00000267858	LOC100131691	-	uncharacterized LOC100131691	ncRNA
19-PTNLD28-TUMOR_peak_100723	chr8	126781669	126781895	+	18.24406	NA	Intergenic	MIR|SINE|MIR	181659	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_100545	chr8	124683358	124683561	+	18.24406	NA	Intergenic	Intergenic	-18269	NM_001081675	340359	Hs.450252	NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch-like family member 38	protein-coding
19-PTNLD28-TUMOR_peak_98329	chr8	39853293	39853458	+	18.24406	NA	intron (NM_194294, intron 8 of 10)	LTR13|LTR|ERVK	60901	NM_194294	169355	Hs.676257	NM_194294	HPRD:14113	IDO2	INDOL1	indoleamine 2,3-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_70073	chr3	119963202	119963343	+	18.24406	NA	promoter-TSS (NM_001168271)	promoter-TSS (NM_001168271)	-130	NM_153002	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_3904	chr1	60949203	60949472	+	18.24406	NA	Intergenic	Intergenic	341919	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_104660	chr9	96312027	96312225	+	18.24406	NA	intron (NM_001286722, intron 11 of 17)	Charlie2b|DNA|hAT-Charlie	-26783	NM_005392	5253	Hs.211441	NM_005392	HPRD:05071	PHF2	CENP-35|GRC5|JHDM1E	PHD finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_25746	chr12	98306783	98307109	+	18.24406	NA	Intergenic	Intergenic	82280	NR_036189	100422924		NR_036189	miRBase:MI0015834	MIR4303	-	microRNA 4303	ncRNA
19-PTNLD28-TUMOR_peak_75511	chr4	61477548	61477790	+	18.24406	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-885170	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_83922	chr5	171334840	171334961	+	18.24406	NA	intron (NM_033644, intron 3 of 12)	intron (NM_033644, intron 3 of 12)	98977	NM_012300	23291	Hs.484138	NM_012300	HPRD:07294	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_91967	chr7	34194933	34195145	+	18.24406	NA	3' UTR (NM_133468, exon 16 of 16)	3' UTR (NM_133468, exon 16 of 16)	250516	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_23178	chr12	13492640	13492874	+	18.24406	NA	Intergenic	Intergenic	36922	NR_036555	283422	Hs.448717	NM_182558	HPRD:08166	C12orf36	-	chromosome 12 open reading frame 36	ncRNA
19-PTNLD28-TUMOR_peak_30152	chr14	49872078	49872344	+	18.24406	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	180923	NM_001032	6235	Hs.156367	NM_001032	HPRD:04698	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
19-PTNLD28-TUMOR_peak_108265	chrX	48887403	48887714	+	18.24406	NA	3' UTR (NM_001282142, exon 10 of 10)	3' UTR (NM_001282142, exon 10 of 10)	13485	NM_001282142	7030	Hs.730740	NM_006521	HPRD:02439	TFE3	RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
19-PTNLD28-TUMOR_peak_71936	chr3	156848218	156848535	+	18.23897	NA	Intergenic	MIRc|SINE|MIR	-7585	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
19-PTNLD28-TUMOR_peak_69933	chr3	114864937	114865090	+	18.23374	NA	intron (NM_015642, intron 1 of 9)	AmnSINE1|SINE|Deu	1114	NM_015642	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_95583	chr7	135541209	135541383	+	18.23103	NA	Intergenic	Intergenic	-107702	NM_205855	389558	Hs.55200	NM_205855	HPRD:15613	FAM180A	UNQ1940	family with sequence similarity 180, member A	protein-coding
19-PTNLD28-TUMOR_peak_40136	chr17	8954118	8954287	+	18.22868	NA	intron (NM_004822, intron 2 of 6)	intron (NM_004822, intron 2 of 6)	29343	NM_004822	9423	Hs.660885	NM_004822	HPRD:03368	NTN1	NTN1L	netrin 1	protein-coding
19-PTNLD28-TUMOR_peak_102978	chr9	37403922	37404158	+	18.22868	NA	Intergenic	LTR8|LTR|ERV1	-18667	NM_012203	9380	Hs.155742	NM_012203	HPRD:05052	GRHPR	GLXR|GLYD|PH2	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
19-PTNLD28-TUMOR_peak_28984	chr13	107638366	107638774	+	18.22868	NA	Intergenic	Intergenic	332342	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_85530	chr6	13925021	13925277	+	18.22868	NA	promoter-TSS (NM_001165033)	promoter-TSS (NM_001165033)	51	NM_152737	221687	Hs.111164	NM_152737	HPRD:15264	RNF182	-	ring finger protein 182	protein-coding
19-PTNLD28-TUMOR_peak_21211	chr11	112641336	112641537	+	18.22868	NA	Intergenic	Intergenic	-190533	NM_181351	4684	Hs.503878	NM_000615	HPRD:00301	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_106499	chr9	134609157	134609474	+	18.22868	NA	intron (NM_005312, intron 1 of 23)	intron (NM_005312, intron 1 of 23)	3610	NM_005312	2889	Hs.127897	NM_005312	HPRD:02627	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_78863	chr5	10111791	10111997	+	18.22868	NA	Intergenic	Intergenic	138127	NR_047669	134145	Hs.481569	NM_199133		FAM173B	JS-2	family with sequence similarity 173, member B	protein-coding
19-PTNLD28-TUMOR_peak_74801	chr4	25486118	25486364	+	18.22868	NA	Intergenic	Intergenic	107393	NM_013367	29945	Hs.152173	NM_013367	HPRD:09505	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_45149	chr18	30411763	30412122	+	18.22868	NA	Intergenic	Intergenic	-58968	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_9210	chr1	201354558	201354757	+	18.22231	NA	intron (NM_005558, intron 4 of 9)	intron (NM_005558, intron 4 of 9)	-7829	NM_001001432	7139	Hs.533613	NM_000364	HPRD:01844	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T type 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_15784	chr10	116384898	116385144	+	18.22083	NA	intron (NM_001003407, intron 1 of 21)	L3b|LINE|CR1	33037	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_34836	chr15	82554338	82554507	+	18.22083	NA	promoter-TSS (NM_001008226)	promoter-TSS (NM_001008226)	682	NM_024580	79631	Hs.459114	NM_024580	HPRD:07812	EFTUD1	FAM42A|HsT19294|RIA1	elongation factor Tu GTP binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58494	chr2	220257526	220257768	+	18.22083	NA	Intergenic	L2|LINE|L2	-4985	NM_012100	23549	Hs.258551	NM_012100	HPRD:09924	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_109968	chrX	153624851	153625133	+	18.21681	NA	Intergenic	AluJb|SINE|Alu	-1579	NM_001256580	6134	Hs.534404	NM_006013	HPRD:02421	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding
19-PTNLD28-TUMOR_peak_58414	chr2	219189767	219189931	+	18.21484	NA	intron (NM_022572, intron 1 of 8)	AluSx3|SINE|Alu	1947	NM_022572	25953	Hs.98475	NM_015488	HPRD:11369	PNKD	BRP17|DYT8|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2	paroxysmal nonkinesigenic dyskinesia	protein-coding
19-PTNLD28-TUMOR_peak_11391	chr1	244361192	244361743	+	18.21171	NA	Intergenic	Intergenic	144960	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_56397	chr2	154259838	154260462	+	18.21171	NA	Intergenic	L1PA2|LINE|L1	75172	NM_019845	56475	Hs.100890	NM_019845	HPRD:18002	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
19-PTNLD28-TUMOR_peak_60499	chr20	31109583	31109804	+	18.21171	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	11931	NR_110619	101929698	Hs.638392	NR_110619		LOC101929698	-	uncharacterized LOC101929698	ncRNA
19-PTNLD28-TUMOR_peak_108662	chrX	70287923	70288117	+	18.21171	NA	exon (NM_001256187, exon 1 of 3)	exon (NM_001256187, exon 1 of 3)	278	NM_001256188	29934	Hs.260750	NM_013346	HPRD:06719	SNX12	-	sorting nexin 12	protein-coding
19-PTNLD28-TUMOR_peak_30644	chr14	61620231	61620442	+	18.21171	NA	Intergenic	Intergenic	128194	NM_001017970	161291	Hs.146180	NM_001017970	HPRD:18567	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
19-PTNLD28-TUMOR_peak_90898	chr7	2322127	2322532	+	18.20769	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	-25117	NR_106895	102465503		NR_106895		MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
19-PTNLD28-TUMOR_peak_98634	chr8	48595547	48596030	+	18.20769	NA	intron (NR_104581, intron 8 of 16)	intron (NR_104581, intron 8 of 16)	54938	NM_005195	1052	Hs.440829	NM_005195		CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
19-PTNLD28-TUMOR_peak_41365	chr17	38375958	38376187	+	18.20769	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	498	NM_133264	147179	Hs.421622	NM_133264	HPRD:18304	WIPF2	WICH|WIRE	WAS/WASL interacting protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_67486	chr3	35780654	35781077	+	18.20769	NA	exon (NM_001267617, exon 16 of 19)	exon (NM_001267617, exon 16 of 19)	-5103	NR_029824	406916		NR_029824		MIR128-2	MIR128B|MIRN128-2|MIRN128B|mir-128b	microRNA 128-2	ncRNA
19-PTNLD28-TUMOR_peak_40650	chr17	21189760	21189969	+	18.20335	NA	intron (NM_145109, intron 1 of 11)	intron (NM_145109, intron 1 of 11)	-1484	NM_002756	5606	Hs.514012	NM_002756	HPRD:03816	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_72638	chr3	181776306	181776568	+	18.18881	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	106285	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_104253	chr9	87793455	87793815	+	18.18881	NA	Intergenic	LTR75|LTR|ERVL	508343	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_19547	chr11	67689444	67689630	+	18.18881	NA	Intergenic	LTR5A|LTR|ERVK	82058	NM_030930	81622	Hs.502989	NM_030930	HPRD:12191	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_40440	chr17	17936916	17937058	+	18.18881	NA	intron (NM_145691, intron 1 of 7)	intron (NM_145691, intron 1 of 7)	5493	NM_145691	91647	Hs.528889	NM_145691	HPRD:10599	ATPAF2	ATP12|ATP12p|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_95509	chr7	134422760	134422970	+	18.18881	NA	Intergenic	L1MEd|LINE|L1	-41299	NM_004342	800	Hs.490203	NM_004342	HPRD:00251	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
19-PTNLD28-TUMOR_peak_74646	chr4	16574895	16575734	+	18.18881	NA	intron (NM_001130834, intron 5 of 8)	intron (NM_001130834, intron 5 of 8)	48340	NR_049865	100847063		NR_049865		MIR548AX	-	microRNA 548ax	ncRNA
19-PTNLD28-TUMOR_peak_11054	chr1	235105832	235106026	+	18.18741	NA	Intergenic	Intergenic	185323	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_49895	chr19	50431901	50432167	+	18.18128	NA	promoter-TSS (NM_001193646)	promoter-TSS (NM_001193646)	75	NM_012068	22809	Hs.9754	NM_012068	HPRD:05906	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding
19-PTNLD28-TUMOR_peak_64351	chr22	19705574	19705924	+	18.17201	NA	promoter-TSS (NR_037612)	promoter-TSS (NR_037612)	-209	NM_001009939	5413	Hs.728762	NM_002688	HPRD:04100	SEPT5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1	septin 5	protein-coding
19-PTNLD28-TUMOR_peak_82208	chr5	133481628	133481786	+	18.17201	NA	3' UTR (NM_001134851, exon 9 of 9)	3' UTR (NM_001134851, exon 9 of 9)	30357	NR_033449	6932	Hs.573153	NM_003202	HPRD:01797	TCF7	TCF-1	transcription factor 7 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_31991	chr14	99740911	99741294	+	18.17201	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-3052	NM_001282237	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_69807	chr3	112359192	112359390	+	18.16998	NA	5' UTR (NM_199511, exon 1 of 8)	5' UTR (NM_199511, exon 1 of 8)	699	NM_199512	151887	Hs.477128	NM_199511	HPRD:10508	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
19-PTNLD28-TUMOR_peak_70445	chr3	125654084	125654386	+	18.16998	NA	intron (NM_001195223, intron 1 of 6)	intron (NM_001195223, intron 1 of 6)	1652	NM_001195223	200810	Hs.591299	NM_001015050	HPRD:18574	ALG1L	ALG1L1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_73222	chr3	191047056	191047917	+	18.16018	NA	exon (NM_178335, exon 1 of 12)	exon (NM_178335, exon 1 of 12)	612	NM_174908	152137	Hs.478682	NM_174908	HPRD:06463	CCDC50	C3orf6|DFNA44|YMER	coiled-coil domain containing 50	protein-coding
19-PTNLD28-TUMOR_peak_70515	chr3	126720903	126721441	+	18.16018	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	13735	NM_032242	5361	Hs.432329	NM_032242	HPRD:11868	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
19-PTNLD28-TUMOR_peak_60019	chr20	18038392	18038695	+	18.16018	NA	promoter-TSS (NM_021220)	promoter-TSS (NM_021220)	-22	NM_021220	58495	Hs.661013	NM_021220	HPRD:15780	OVOL2	EUROIMAGE566589|ZNF339	ovo-like zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_10690	chr1	229091511	229091802	+	18.16005	NA	Intergenic	Intergenic	220832	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_50359	chr19	55831226	55831396	+	18.16005	NA	intron (NM_001282011, intron 6 of 7)	intron (NM_001282011, intron 6 of 7)	5397	NM_001085488	284417	Hs.382625	NM_001085488	ENSG00000180061	TMEM150B	TMEM224	transmembrane protein 150B	protein-coding
19-PTNLD28-TUMOR_peak_25615	chr12	94198622	94198875	+	18.16005	NA	intron (NM_003805, intron 2 of 2)	intron (NM_003805, intron 2 of 2)	-67149	NR_110092	101928731	Hs.659971	NR_110092		LOC101928731	-	uncharacterized LOC101928731	ncRNA
19-PTNLD28-TUMOR_peak_71543	chr3	147290486	147290666	+	18.16005	NA	Intergenic	Intergenic	151462	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_57114	chr2	176953083	176953256	+	18.16005	NA	Intergenic	CpG	-4363	NM_000523	3239	Hs.152414	NM_000523	HPRD:00872	HOXD13	BDE|BDSD|HOX4I|SPD	homeobox D13	protein-coding
19-PTNLD28-TUMOR_peak_93916	chr7	91705920	91706111	+	18.15928	NA	intron (NM_147185, intron 28 of 49)	intron (NM_147185, intron 28 of 49)	57825	NM_000786	1595	Hs.417077	NM_000786	HPRD:03381	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450, family 51, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_16030	chr10	123886866	123887052	+	18.15928	NA	intron (NM_001291879, intron 1 of 16)	intron (NM_001291879, intron 1 of 16)	14405	NM_001291879	10579	Hs.501252	NM_006997	HPRD:05600	TACC2	AZU-1|ECTACC	transforming, acidic coiled-coil containing protein 2	protein-coding
19-PTNLD28-TUMOR_peak_75436	chr4	57624013	57624180	+	18.15928	NA	Intergenic	Intergenic	63543	NR_073417	6691	Hs.98243	NM_021114	HPRD:10422	SPINK2	HUSI-II	serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)	protein-coding
19-PTNLD28-TUMOR_peak_41045	chr17	32688591	32688783	+	18.15928	NA	intron (NM_002981, intron 2 of 2)	intron (NM_002981, intron 2 of 2)	1565	NM_002981	6346	Hs.72918	NM_002981	HPRD:01654	CCL1	I-309|P500|SCYA1|SISe|TCA3	chemokine (C-C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_37154	chr16	29721661	29721882	+	18.15928	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	31330	NM_014298	23475	Hs.513484	NM_014298		QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_81160	chr5	92635585	92636138	+	18.15928	NA	Intergenic	Intergenic	271188	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76867	chr4	122302119	122302351	+	18.15928	NA	promoter-TSS (NM_198179)	promoter-TSS (NM_198179)	-54	NM_198179	84109	Hs.368977	NM_198179		QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
19-PTNLD28-TUMOR_peak_319	chr1	4469393	4469534	+	18.15928	NA	Intergenic	L1MEe|LINE|L1	-2648	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	ncRNA
19-PTNLD28-TUMOR_peak_52526	chr2	45908920	45909107	+	18.15928	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	29970	NM_005400	5581	Hs.580351	NM_005400	HPRD:01500	PRKCE	PKCE|nPKC-epsilon	protein kinase C, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_51941	chr2	30448411	30448572	+	18.15920	NA	Intergenic	Intergenic	-5906	NM_030915	81606	Hs.567598	NM_030915	HPRD:13965	LBH	-	limb bud and heart development	protein-coding
19-PTNLD28-TUMOR_peak_72287	chr3	170527400	170527638	+	18.15920	NA	Intergenic	Intergenic	60526	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_47430	chr19	12758456	12758850	+	18.15920	NA	intron (NM_001173498, intron 21 of 23)	CpG	18938	NM_001173498	4125	Hs.356769	NM_000528	HPRD:02007	MAN2B1	LAMAN|MANB	mannosidase, alpha, class 2B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22696	chr12	6149250	6149420	+	18.15920	NA	intron (NM_000552, intron 18 of 51)	intron (NM_000552, intron 18 of 51)	84501	NM_000552	7450	Hs.440848	NM_000552	HPRD:01906	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
19-PTNLD28-TUMOR_peak_32942	chr15	32954936	32955072	+	18.15920	NA	intron (NM_001144757, intron 2 of 5)	MamRep1161|DNA|TcMar	21134	NM_003020	6447	Hs.156540	NM_003020	HPRD:01410	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V (7B2 protein)	protein-coding
19-PTNLD28-TUMOR_peak_109150	chrX	109247588	109247772	+	18.15060	NA	intron (NM_032227, intron 2 of 6)	intron (NM_032227, intron 2 of 6)	1338	NM_032227	84187	Hs.496572	NM_017698	HPRD:06539	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
19-PTNLD28-TUMOR_peak_103275	chr9	44178080	44178269	+	18.15060	NA	Intergenic	MER52A|LTR|ERV1	-206411	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_30989	chr14	69330031	69330279	+	18.14965	NA	Intergenic	Intergenic	-67195	NM_001244701	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_41410	chr17	39065674	39065887	+	18.14965	NA	Intergenic	Intergenic	-24285	NM_019010	54474	Hs.84905	NM_019010	HPRD:12193	KRT20	CD20|CK-20|CK20|K20|KRT21	keratin 20	protein-coding
19-PTNLD28-TUMOR_peak_74003	chr4	3681606	3681763	+	18.14965	NA	Intergenic	Intergenic	-2102	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	ncRNA
19-PTNLD28-TUMOR_peak_41063	chr17	33416353	33416545	+	18.14965	NA	promoter-TSS (NR_037713)	promoter-TSS (NR_037713)	-101	NR_037713	117584	Hs.13680	NM_057178	HPRD:11489	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_33253	chr15	41836181	41836693	+	18.14965	NA	promoter-TSS (NM_015540)	promoter-TSS (NM_015540)	38	NM_015540	26015	Hs.371045	NM_015540	HPRD:11522	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_3579	chr1	53910363	53910538	+	18.14965	NA	Intergenic	LTR13|LTR|ERVK	-4757	NR_002314	163742	Hs.99394	NR_002314	ENSG00000236253	SLC25A3P1	-	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_8088	chr1	169101874	169102011	+	18.14209	NA	TTS (NM_001677)	TTS (NM_001677)	25995	NM_001677	481	Hs.291196	NM_001677	HPRD:01663	ATP1B1	ATP1B	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_30969	chr14	69169951	69170124	+	18.14209	NA	Intergenic	Intergenic	90594	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_63238	chr21	34697657	34697958	+	18.13480	NA	intron (NM_000629, intron 1 of 10)	intron (NM_000629, intron 1 of 10)	593	NM_000629	3454	Hs.529400	NM_000629	HPRD:00126	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC	interferon (alpha, beta and omega) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_98128	chr8	33422459	33422594	+	18.12480	NA	intron (NM_024787, intron 1 of 5)	intron (NM_024787, intron 1 of 5)	2120	NM_024787	79845	Hs.151237	NM_024787	HPRD:11498	RNF122	-	ring finger protein 122	protein-coding
19-PTNLD28-TUMOR_peak_10613	chr1	228328931	228329114	+	18.12151	NA	intron (NM_000858, intron 2 of 8)	intron (NM_000858, intron 2 of 8)	1093	NM_000858	2987	Hs.376933	NM_000858	HPRD:00755	GUK1	GMK	guanylate kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86904	chr6	33928178	33928431	+	18.11804	NA	Intergenic	Intergenic	39524	NR_031681	100302123		NR_031681	miRBase:MI0006415	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	ncRNA
19-PTNLD28-TUMOR_peak_85996	chr6	24877490	24877660	+	18.11331	NA	promoter-TSS (NM_015864)	promoter-TSS (NM_015864)	18	NM_015864	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_25954	chr12	105186519	105186748	+	18.11331	NA	Intergenic	Intergenic	135839	NM_032148	84102	Hs.577463	NM_032148	HPRD:15389	SLC41A2	SLC41A1-L1	solute carrier family 41 (magnesium transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_85198	chr6	7992657	7993038	+	18.11331	NA	intron (NR_037616, intron 4 of 12)	intron (NR_037616, intron 4 of 12)	6512	NR_027712	206426	Hs.676966	NR_027712		PIP5K1P1	-	phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_45945	chr18	56161172	56161332	+	18.11331	NA	intron (NM_052947, intron 12 of 12)	intron (NM_052947, intron 12 of 12)	-42868	NR_039899	100616357		NR_039899		MIR3591	-	microRNA 3591	ncRNA
19-PTNLD28-TUMOR_peak_50821	chr2	1976340	1976476	+	18.11331	NA	intron (NM_015025, intron 8 of 24)	intron (NM_015025, intron 8 of 24)	-228089	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_65675	chr22	41748213	41748338	+	18.11331	NA	intron (NM_017590, intron 17 of 22)	L1MC4|LINE|L1	-15062	NM_001145398	7008	Hs.181159	NM_003216	HPRD:01783	TEF	-	thyrotrophic embryonic factor	protein-coding
19-PTNLD28-TUMOR_peak_33316	chr15	43398264	43398442	+	18.11331	NA	promoter-TSS (NM_174916)	promoter-TSS (NM_174916)	-67	NM_174916	197131	Hs.591121	NM_174916	HPRD:09342	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
19-PTNLD28-TUMOR_peak_80690	chr5	73621763	73622018	+	18.10665	NA	intron (NR_105010, intron 2 of 2)	intron (NR_105010, intron 2 of 2)	3579	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
19-PTNLD28-TUMOR_peak_54177	chr2	95523113	95523314	+	18.10665	NA	promoter-TSS (NR_003366)	promoter-TSS (NR_003366)	-393	NR_003366	729171	Hs.456852	NR_003366		ANKRD20A8P	ANKRD20B	ankyrin repeat domain 20 family, member A8, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_4990	chr1	94559607	94559907	+	18.10089	NA	intron (NM_000350, intron 6 of 49)	intron (NM_000350, intron 6 of 49)	26948	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_55339	chr2	121110321	121110563	+	18.09678	NA	Intergenic	Intergenic	6723	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_21948	chr11	126235874	126236319	+	18.09678	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	10307	NM_006278	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_24481	chr12	53775775	53776043	+	18.09442	NA	exon (NM_003109, exon 3 of 6)	exon (NM_003109, exon 3 of 6)	1481	NM_003109	6667	Hs.620754	NM_003109	HPRD:01796	SP1	-	Sp1 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_95886	chr7	141211524	141212072	+	18.09377	NA	Intergenic	Intergenic	-39280	NM_018238	55750	Hs.743318	NM_018238		AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
19-PTNLD28-TUMOR_peak_108915	chrX	92928242	92928784	+	18.09230	NA	promoter-TSS (NM_001171110)	promoter-TSS (NM_001171110)	169	NM_004538	4675	Hs.21365	NM_004538	HPRD:02123	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_72925	chr3	186153764	186153986	+	18.09230	NA	Intergenic	SVA_B|Other|Other	57575	NR_033844	253573	Hs.97386	NR_033844	ENSG00000224406	LOC253573	-	uncharacterized LOC253573	ncRNA
19-PTNLD28-TUMOR_peak_82710	chr5	140787461	140787817	+	18.09230	NA	promoter-TSS (NM_018926)	promoter-TSS (NM_018926)	-131	NM_018926	56100	Hs.368160	NM_018926	HPRD:09393	PCDHGB6	PCDH-GAMMA-B6	protocadherin gamma subfamily B, 6	protein-coding
19-PTNLD28-TUMOR_peak_20489	chr11	87334509	87335071	+	18.09230	NA	Intergenic	L1PA3|LINE|L1	573845	NM_022337	23682	Hs.591975	NM_022337	HPRD:05889	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_52427	chr2	43568096	43568457	+	18.09230	NA	intron (NM_022065, intron 30 of 37)	intron (NM_022065, intron 30 of 37)	113926	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_54778	chr2	109574491	109574777	+	18.09230	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	31194	NM_022336	10913	Hs.171971	NM_022336	HPRD:04974	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
19-PTNLD28-TUMOR_peak_82897	chr5	142936863	142937162	+	18.09230	NA	Intergenic	Intergenic	-121935	NM_001018075	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_18238	chr11	44323532	44323707	+	18.08769	NA	intron (NM_021926, intron 1 of 3)	intron (NM_021926, intron 1 of 3)	8097	NM_021926	60529	Hs.436055	NM_021926	HPRD:05661	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_33304	chr15	42840851	42841286	+	18.08769	NA	promoter-TSS (NM_153260)	promoter-TSS (NM_153260)	57	NM_001130447	55142	Hs.14347	NM_018097	HPRD:07675	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin-like complex, subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_95127	chr7	128249069	128249293	+	18.08769	NA	Intergenic	Intergenic	-32114	NR_024368	402483	Hs.722350	NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
19-PTNLD28-TUMOR_peak_85287	chr6	10519674	10519832	+	18.08769	NA	Intergenic	AluSx1|SINE|Alu	-1815	NM_145649	2651	Hs.519884	NM_001491	HPRD:02695	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
19-PTNLD28-TUMOR_peak_64494	chr22	21235610	21235860	+	18.08769	NA	intron (NM_004782, intron 3 of 4)	AluSq|SINE|Alu	22443	NM_004782	9342	Hs.108002	NM_004782	HPRD:11968	SNAP29	CEDNIK|SNAP-29	synaptosomal-associated protein, 29kDa	protein-coding
19-PTNLD28-TUMOR_peak_55144	chr2	114635614	114635825	+	18.08093	NA	intron (NR_110174, intron 1 of 4)	L2c|LINE|L2	-11792	NR_102318	10096	Hs.433512	NM_005721	HPRD:05024	ACTR3	ARP3	ARP3 actin-related protein 3 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_56870	chr2	170040656	170040972	+	18.07551	NA	intron (NM_004525, intron 50 of 78)	intron (NM_004525, intron 50 of 78)	103197	NM_001142271	10170	Hs.179608	NM_005771	HPRD:09916	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4	dehydrogenase/reductase (SDR family) member 9	protein-coding
19-PTNLD28-TUMOR_peak_25453	chr12	81125446	81125840	+	18.07551	NA	Intergenic	Intergenic	14935	NM_005593	4617	Hs.178023	NM_005593	HPRD:01168	MYF5	bHLHc2	myogenic factor 5	protein-coding
19-PTNLD28-TUMOR_peak_28348	chr13	53584962	53585172	+	18.07551	NA	Intergenic	Intergenic	-17809	NM_006418	10562	Hs.508113	NM_006418	HPRD:06580	OLFM4	GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD	olfactomedin 4	protein-coding
19-PTNLD28-TUMOR_peak_43678	chr17	75720951	75721104	+	18.07551	NA	non-coding (NR_104134, exon 2 of 2)	non-coding (NR_104134, exon 2 of 2)	3614	NR_104134	100132174	Hs.640110	NR_104134		LOC100132174	-	uncharacterized LOC100132174	ncRNA
19-PTNLD28-TUMOR_peak_21857	chr11	124618598	124619041	+	18.07551	NA	intron (NM_014312, intron 4 of 6)	MIRb|SINE|MIR	3290	NM_014312	23584	Hs.112377	NM_014312	HPRD:08390	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_101102	chr8	134115065	134115574	+	18.07551	NA	promoter-TSS (NM_001045557)	promoter-TSS (NM_001045557)	-9	NM_001282964	6503	Hs.75367	NM_006748	HPRD:03060	SLA	SLA1|SLAP	Src-like-adaptor	protein-coding
19-PTNLD28-TUMOR_peak_25731	chr12	97669112	97669373	+	18.07551	NA	Intergenic	Intergenic	-189557	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_35940	chr16	3848046	3848215	+	18.07551	NA	intron (NM_004380, intron 3 of 30)	L1MB7|LINE|L1	-80532	NM_001272049	10131	Hs.30345	NM_016292	HPRD:05868	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_13188	chr10	43640340	43640542	+	18.07551	NA	intron (NM_018590, intron 1 of 7)	L1ME1|LINE|L1	6548	NM_018590	55454	Hs.657569	NM_018590	HPRD:11348	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_39781	chr17	4133104	4133261	+	18.07551	NA	intron (NR_047571, intron 2 of 23)	MLT1F1|LTR|ERVL-MaLR	33960	NM_001257999	51479	Hs.696087	NM_016376	HPRD:09717	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_66757	chr3	13686289	13686446	+	18.07543	NA	Intergenic	MER21-int|LTR|ERVL	-5854	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
19-PTNLD28-TUMOR_peak_86633	chr6	31628471	31628684	+	18.07207	NA	promoter-TSS (NM_021184).2	promoter-TSS (NM_021184).2	-28	NM_021184	57827	Hs.247323	NM_021184	HPRD:12883	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_20600	chr11	93473286	93473512	+	18.07112	NA	intron (NM_024116, intron 1 of 5)	AluJb|SINE|Alu	1304	NM_024116	79101	Hs.355750	NM_024116	HPRD:14679	TAF1D	JOSD3|RAFI41|TAF(I)41|TAFI41	TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa	protein-coding
19-PTNLD28-TUMOR_peak_56788	chr2	166649651	166649861	+	18.07112	NA	intron (NM_004482, intron 1 of 10)	intron (NM_004482, intron 1 of 10)	1047	NM_004482	2591	Hs.170986	NM_004482	HPRD:03453	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_27217	chr12	131706856	131707063	+	18.05899	NA	Intergenic	MER4D|LTR|ERV1	57403	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_66693	chr3	12837985	12838373	+	18.05469	NA	promoter-TSS (NM_012298)	promoter-TSS (NM_012298)	8	NM_001162499	23066	Hs.343664	NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_44138	chr17	80735747	80735914	+	18.05469	NA	intron (NM_005993, intron 6 of 38)	LTR13|LTR|ERVK	25890	NM_005993	6904	Hs.464391	NM_005993	HPRD:05227	TBCD	SSD-1|tfcD	tubulin folding cofactor D	protein-coding
19-PTNLD28-TUMOR_peak_89668	chr6	138776259	138776462	+	18.05469	NA	intron (NM_020464, intron 3 of 6)	intron (NM_020464, intron 3 of 6)	-19929	NR_036099	100423001		NR_036099		MIR3145	-	microRNA 3145	ncRNA
19-PTNLD28-TUMOR_peak_75916	chr4	80993728	80994056	+	18.05469	NA	5' UTR (NM_001145794, exon 1 of 16)	5' UTR (NM_001145794, exon 1 of 16)	585	NM_001286781	118429	Hs.162963	NM_058172	HPRD:07452	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	anthrax toxin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_87295	chr6	39177065	39177612	+	18.04764	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	19913	NM_003740	8645	Hs.444448	NM_003740	HPRD:04604	KCNK5	K2p5.1|TASK-2|TASK2	potassium channel, subfamily K, member 5	protein-coding
19-PTNLD28-TUMOR_peak_64366	chr22	19837377	19837574	+	18.04376	NA	3' UTR (NM_024627, exon 3 of 3)	3' UTR (NM_024627, exon 3 of 3)	4896	NM_024627	79680	Hs.105642	NM_024627	HPRD:13382	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding
19-PTNLD28-TUMOR_peak_10809	chr1	231004523	231004957	+	18.04376	NA	promoter-TSS (NM_032800)	promoter-TSS (NM_032800)	-438	NM_032800	84886	Hs.520494	NM_032800	HPRD:13359	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
19-PTNLD28-TUMOR_peak_93111	chr7	72115241	72115422	+	18.03848	NA	intron (NM_001145440, intron 12 of 14)	intron (NM_001145440, intron 12 of 14)	-47543	NR_039794	100616331		NR_039794	miRBase:MI0017278	MIR4650-2	-	microRNA 4650-2	ncRNA
19-PTNLD28-TUMOR_peak_105106	chr9	107657897	107658125	+	18.03848	NA	intron (NM_005502, intron 2 of 49)	intron (NM_005502, intron 2 of 49)	32516	NM_005502	19	Hs.659274	NM_005502	HPRD:02501	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_70900	chr3	133014211	133014345	+	18.03848	NA	intron (NM_001282865, intron 2 of 3)	MIRc|SINE|MIR	-38313	NR_110812	101927455	Hs.570550	NR_110812	ENSG00000251011	TMEM108-AS1	-	TMEM108 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8810	chr1	184105326	184105436	+	18.03848	NA	Intergenic	L1PA4|LINE|L1	84596	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_412	chr1	6822234	6822462	+	18.03848	NA	Intergenic	Intergenic	-23036	NM_015215	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_8650	chr1	181713073	181713407	+	18.03848	NA	intron (NM_001205293, intron 25 of 47)	intron (NM_001205293, intron 25 of 47)	260554	NM_001205294	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_56976	chr2	173079875	173080483	+	18.03848	NA	Intergenic	Intergenic	-112701	NM_004405	1746	Hs.419	NM_004405	HPRD:00527	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_74091	chr4	4805340	4805560	+	18.03744	NA	Intergenic	Intergenic	-40714	NR_125765	103695434	Hs.550830	NR_125765		LINC01396	-	long intergenic non-protein coding RNA 1396	ncRNA
19-PTNLD28-TUMOR_peak_105567	chr9	116917642	116917768	+	18.03744	NA	promoter-TSS (NM_032888)	promoter-TSS (NM_032888)	-526	NM_032888	85301	Hs.494892	NM_032888		COL27A1	STLS	collagen, type XXVII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_31325	chr14	75721668	75721973	+	18.03581	NA	Intergenic	Intergenic	-23661	NM_005252	2353	Hs.25647	NM_005252	HPRD:01275	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_102808	chr9	34664373	34664575	+	18.02999	NA	Intergenic	Intergenic	-1785	NM_006664	10850	Hs.648124	NM_006664	HPRD:05321	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	chemokine (C-C motif) ligand 27	protein-coding
19-PTNLD28-TUMOR_peak_93557	chr7	76961305	76961468	+	18.02999	NA	intron (NM_017439, intron 19 of 30)	intron (NM_017439, intron 19 of 30)	-83129	NR_110073	101927243	Hs.547753	NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
19-PTNLD28-TUMOR_peak_98730	chr8	52810922	52811121	+	18.02999	NA	intron (NM_052937, intron 1 of 5)	intron (NM_052937, intron 1 of 5)	725	NM_001286782	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_10479	chr1	226303459	226303607	+	18.02710	NA	Intergenic	SVA_D|Other|Other	53105	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_80174	chr5	60746081	60746504	+	18.02710	NA	intron (NM_020928, intron 1 of 13)	AT_rich|Low_complexity|Low_complexity	118192	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_40772	chr17	26711373	26711928	+	18.02629	NA	intron (NM_015077, intron 4 of 9)	CpG	12967	NM_015077	23098	Hs.743510	NM_015077	ENSG00000004139	SARM1	MyD88-5|SAMD2|SARM	sterile alpha and TIR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_10464	chr1	226150023	226150380	+	18.02629	NA	Intergenic	Intergenic	-21118	NM_003240	7044	Hs.520187	NM_003240	HPRD:03526	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
19-PTNLD28-TUMOR_peak_92706	chr7	56355475	56355942	+	18.02629	NA	Intergenic	CpG	160360	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90826	chr7	1440646	1440904	+	18.02629	NA	Intergenic	LTR8A|LTR|ERV1	58334	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_59668	chr20	5515872	5516106	+	18.02495	NA	Intergenic	Intergenic	-25341	NR_109860	101929207	Hs.516871	NR_109860		LOC101929207	-	uncharacterized LOC101929207	ncRNA
19-PTNLD28-TUMOR_peak_95444	chr7	132500551	132500829	+	18.02495	NA	intron (NM_017812, intron 6 of 7)	MER117|DNA|hAT-Charlie	167137	NR_046323	286023	Hs.671875	NM_173682	HPRD:08276	FLJ40288	-	uncharacterized FLJ40288	ncRNA
19-PTNLD28-TUMOR_peak_31864	chr14	95691706	95691888	+	18.02495	NA	intron (NM_024734, intron 2 of 12)	intron (NM_024734, intron 2 of 12)	-67450	NM_030621	23405	Hs.87889	NM_030621	HPRD:05875	DICER1	DCR1|Dicer|HERNA|MNG1|RMSE2	dicer 1, ribonuclease type III	protein-coding
19-PTNLD28-TUMOR_peak_49551	chr19	47494340	47494708	+	18.02495	NA	intron (NM_004491, intron 4 of 5)	intron (NM_004491, intron 4 of 5)	-29619	NM_002517	4861	Hs.79564	NM_002517	HPRD:09136	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_23799	chr12	41086116	41086266	+	18.02495	NA	promoter-TSS (NM_001256063)	promoter-TSS (NM_001256063)	-53	NM_001256063	1272	Hs.143434	NM_001843	HPRD:07189	CNTN1	F3|GP135|MYPCN	contactin 1	protein-coding
19-PTNLD28-TUMOR_peak_1399	chr1	22659657	22659828	+	18.01987	NA	Intergenic	MIRc|SINE|MIR	-118602	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_78288	chr4	185186879	185187016	+	18.00722	NA	Intergenic	L1M6|LINE|L1	-47833	NM_153343	133121	Hs.297814	NM_153343	HPRD:16863	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
19-PTNLD28-TUMOR_peak_47134	chr19	9650713	9650917	+	18.00722	NA	Intergenic	HERVH-int|LTR|ERV1	-1494	NM_001300883	79088	Hs.594011	NM_024106	HPRD:15787	ZNF426	-	zinc finger protein 426	protein-coding
19-PTNLD28-TUMOR_peak_54965	chr2	112303457	112303955	+	18.00722	NA	Intergenic	Intergenic	-51014	NR_024373	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_30286	chr14	52456530	52456930	+	18.00722	NA	intron (NM_016039, intron 1 of 7)	intron (NM_016039, intron 1 of 7)	502	NM_016039	51637	Hs.534457	NM_016039	HPRD:16615	C14orf166	CGI99|CLE|CLE7|LCRP369|RLLM1	chromosome 14 open reading frame 166	protein-coding
19-PTNLD28-TUMOR_peak_70171	chr3	122612239	122612388	+	18.00298	NA	Intergenic	Intergenic	6953	NR_024618	100129550	Hs.61558	NR_024618	ENSG00000273033	LOC100129550	-	uncharacterized LOC100129550	ncRNA
19-PTNLD28-TUMOR_peak_52423	chr2	43532129	43532540	+	18.00298	NA	intron (NM_022065, intron 31 of 37)	intron (NM_022065, intron 31 of 37)	77984	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_98397	chr8	41400315	41400507	+	17.99236	NA	3' UTR (NM_032336, exon 8 of 8)	3' UTR (NM_032336, exon 8 of 8)	13686	NM_032336	84296	Hs.656996	NM_032336	HPRD:11583	GINS4	SLD5	GINS complex subunit 4 (Sld5 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_87320	chr6	39590549	39590793	+	17.99236	NA	intron (NM_001289020, intron 5 of 21)	MLT1J|LTR|ERVL-MaLR	102510	NM_001289021	221458	Hs.588202	NM_145027	HPRD:10786	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
19-PTNLD28-TUMOR_peak_84408	chr5	177804086	177804265	+	17.99236	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	-144352	NR_103509	85007	Hs.248746	NM_153373	HPRD:18482	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_41654	chr17	41771883	41772044	+	17.99236	NA	Intergenic	Intergenic	-32701	NM_001040002	4222	Hs.438	NM_004527	HPRD:02537	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_79265	chr5	26847114	26847470	+	17.99236	NA	Intergenic	Intergenic	191397	NM_016279	1007	Hs.272212	NM_016279	HPRD:13021	CDH9	-	cadherin 9, type 2 (T1-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_21556	chr11	119015673	119015852	+	17.99236	NA	Intergenic	Intergenic	-3988	NM_022169	64137	Hs.126378	NM_022169	HPRD:12130	ABCG4	WHITE2	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding
19-PTNLD28-TUMOR_peak_66312	chr3	5753438	5753850	+	17.99236	NA	Intergenic	Intergenic	-461704	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_17875	chr11	33021807	33022037	+	17.99236	NA	Intergenic	L1PA11|LINE|L1	-15488	NM_001077242	91614	Hs.280990	NM_139160	HPRD:11280	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_29962	chr14	37517845	37518283	+	17.99236	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	-96468	NR_039725	100616280		NR_039725		MIR4503	-	microRNA 4503	ncRNA
19-PTNLD28-TUMOR_peak_11997	chr10	11410182	11410349	+	17.98132	NA	Intergenic	Intergenic	164014	NM_001080491	9712	Hs.498661	NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_104744	chr9	97703801	97704022	+	17.98132	NA	intron (NM_001193329, intron 6 of 15)	intron (NM_001193329, intron 6 of 15)	-123721	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_52912	chr2	58468055	58468657	+	17.98132	NA	exon (NM_018062, exon 1 of 14)	exon (NM_018062, exon 1 of 14)	159	NM_001114636	55120	Hs.631890	NM_018062	HPRD:06997	FANCL	FAAP43|PHF9|POG	Fanconi anemia, complementation group L	protein-coding
19-PTNLD28-TUMOR_peak_66613	chr3	11540255	11540472	+	17.98132	NA	intron (NM_001136031, intron 17 of 17)	intron (NM_001136031, intron 17 of 17)	70035	NM_001128221	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_52561	chr2	46503711	46504091	+	17.98132	NA	Intergenic	Intergenic	-20640	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_95570	chr7	135399392	135399608	+	17.98132	NA	intron (NM_012450, intron 2 of 15)	intron (NM_012450, intron 2 of 15)	13433	NM_012450	26266	Hs.200022	NM_012450	HPRD:10372	SLC13A4	SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_21641	chr11	120195827	120196466	+	17.98132	NA	intron (NM_001198675, intron 1 of 1)	CpG	308	NM_001198674	219902	Hs.643516	NM_174926	HPRD:14461	TMEM136	-	transmembrane protein 136	protein-coding
19-PTNLD28-TUMOR_peak_7983	chr1	167509072	167509251	+	17.98132	NA	Intergenic	AluY|SINE|Alu	13895	NM_003851	8804	Hs.5710	NM_003851	HPRD:09897	CREG1	CREG	cellular repressor of E1A-stimulated genes 1	protein-coding
19-PTNLD28-TUMOR_peak_52337	chr2	42329854	42330068	+	17.98057	NA	Intergenic	Intergenic	54800	NM_138370	91461	Hs.408542	NM_138370	HPRD:18707	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_50500	chr19	57918008	57918177	+	17.98057	NA	Intergenic	L1M2|LINE|L1	-4437	NM_006959	7565	Hs.729403	NM_006959	HPRD:18323	ZNF17	HPF3|KOX10	zinc finger protein 17	protein-coding
19-PTNLD28-TUMOR_peak_82428	chr5	137371763	137371937	+	17.98057	NA	Intergenic	MER91B|DNA|hAT-Tip100	-3048	NM_001101801	51306	Hs.567453	NM_016603	HPRD:06464	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13, member B	protein-coding
19-PTNLD28-TUMOR_peak_101624	chr8	144465820	144465989	+	17.98057	NA	3' UTR (NM_052924, exon 15 of 15)	3' UTR (NM_052924, exon 15 of 15)	14879	NM_052924	114822	Hs.521912	NM_052924	HPRD:17973	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin, Rho GTPase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_96385	chr7	151123725	151124006	+	17.97934	NA	Intergenic	L4|LINE|RTE	6860	NR_037468	100500835		NR_037468		MIR3907	-	microRNA 3907	ncRNA
19-PTNLD28-TUMOR_peak_78588	chr5	442860	443326	+	17.97934	NA	promoter-TSS (NM_007277)	promoter-TSS (NM_007277)	165	NM_138464	116349	Hs.446702	NM_138464	ENSG00000221990	C5orf55	-	chromosome 5 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_18744	chr11	58940852	58941112	+	17.97409	NA	intron (NM_015177, intron 1 of 8)	CpG	1170	NM_015177	23220	Hs.523696	NM_015177	ENSG00000110042	DTX4	RNF155	deltex 4, E3 ubiquitin ligase	protein-coding
19-PTNLD28-TUMOR_peak_66755	chr3	13601793	13602028	+	17.96990	NA	intron (NM_001998, intron 1 of 16)	intron (NM_001998, intron 1 of 16)	-8330	NM_001165035	2199	Hs.198862	NM_001998	HPRD:00630	FBLN2	-	fibulin 2	protein-coding
19-PTNLD28-TUMOR_peak_44040	chr17	79961275	79961441	+	17.96711	NA	intron (NR_045351, intron 6 of 14)	intron (NR_045351, intron 6 of 14)	19427	NM_144998	201254	Hs.37616	NM_144998	HPRD:18121	STRA13	CENP-X|CENPX|D9|FAAP10|MHF2	stimulated by retinoic acid 13	protein-coding
19-PTNLD28-TUMOR_peak_73714	chr3	197944676	197944967	+	17.96581	NA	Intergenic	Intergenic	65584	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_24270	chr12	52221776	52221919	+	17.96512	NA	intron (NM_001013690, intron 1 of 1)	intron (NM_001013690, intron 1 of 1)	3854	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_69681	chr3	110245718	110245861	+	17.96512	NA	Intergenic	Intergenic	543017	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89219	chr6	116692830	116692984	+	17.96512	NA	intron (NM_013352, intron 1 of 5)	intron (NM_013352, intron 1 of 5)	797	NM_013352	29940	Hs.458358	NM_013352	HPRD:05807	DSE	DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
19-PTNLD28-TUMOR_peak_43313	chr17	72413488	72413615	+	17.96453	NA	Intergenic	MIR3|SINE|MIR	-14116	NM_022036	55890	Hs.446438	NM_018653		GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor, class C, group 5, member C	protein-coding
19-PTNLD28-TUMOR_peak_20582	chr11	92982683	92982872	+	17.96453	NA	Intergenic	Intergenic	-51636	NM_152313	120103	Hs.148766	NM_152313		SLC36A4	PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_76307	chr4	95720027	95720431	+	17.96453	NA	intron (NM_001203, intron 1 of 12)	intron (NM_001203, intron 1 of 12)	41101	NM_001203	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_55308	chr2	120399269	120399415	+	17.96453	NA	intron (NR_073132, intron 22 of 24)	intron (NR_073132, intron 22 of 24)	-37401	NM_001105198	80775	Hs.439991	NM_030577	HPRD:14409	TMEM177	-	transmembrane protein 177	protein-coding
19-PTNLD28-TUMOR_peak_101866	chr9	140112	140236	+	17.96453	NA	intron (NM_001145356, intron 9 of 13)	L1PA3|LINE|L1	-21757	NM_207305	2298	Hs.584759	NM_207305	HPRD:03056	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
19-PTNLD28-TUMOR_peak_43959	chr17	79353477	79353662	+	17.96453	NA	exon (NM_001272086, exon 3 of 4)	exon (NM_001272086, exon 3 of 4)	5591	NM_001272086	100130370	Hs.646594	NM_001272086		LOC100130370	-	uncharacterized LOC100130370	protein-coding
19-PTNLD28-TUMOR_peak_57340	chr2	183954104	183954431	+	17.96453	NA	intron (NM_080876, intron 3 of 3)	LTR16D|LTR|ERVL	10980	NM_080876	142679	Hs.132237	NM_080876	HPRD:13254	DUSP19	DUSP17|LMWDSP3|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding
19-PTNLD28-TUMOR_peak_48866	chr19	38664058	38664264	+	17.96453	NA	intron (NM_015073, intron 15 of 21)	intron (NM_015073, intron 15 of 21)	50729	NM_001289978	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_63439	chr21	38352935	38353255	+	17.96453	NA	5' UTR (NM_001242785, exon 1 of 12)	5' UTR (NM_001242785, exon 1 of 12)	169	NM_001242785	3141	Hs.371350	NM_000411	HPRD:08360	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
19-PTNLD28-TUMOR_peak_36729	chr16	21419245	21419380	+	17.96046	NA	intron (NM_130464, intron 5 of 11)	intron (NM_130464, intron 5 of 11)	17346	NM_130464	23117	Hs.611072	NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family, member B3	protein-coding
19-PTNLD28-TUMOR_peak_24881	chr12	60541900	60542158	+	17.95802	NA	Intergenic	Intergenic	458911	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_95433	chr7	132195512	132195707	+	17.95802	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	65714	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_86091	chr6	26141612	26142131	+	17.95802	NA	Intergenic	Intergenic	-14688	NM_005321	3008	Hs.248133	NM_005321	HPRD:07513	HIST1H1E	H1.4|H1E|H1F4|H1s-4|dJ221C16.5	histone cluster 1, H1e	protein-coding
19-PTNLD28-TUMOR_peak_48566	chr19	34012474	34012910	+	17.95802	NA	5' UTR (NM_001166056, exon 1 of 13)	5' UTR (NM_001166056, exon 1 of 13)	107	NM_001166057	5184	Hs.36473	NM_000285	HPRD:01358	PEPD	PROLIDASE	peptidase D	protein-coding
19-PTNLD28-TUMOR_peak_27859	chr13	37260133	37260389	+	17.95802	NA	intron (NM_203451, intron 1 of 1)	intron (NM_203451, intron 1 of 1)	12212	NM_203451	400120	Hs.422375	NM_203451	HPRD:14219	SERTM1	C13orf36	serine-rich and transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_35410	chr15	98865848	98866060	+	17.95802	NA	Intergenic	Intergenic	191657	NM_182562	283777	Hs.668070	NM_182562	HPRD:08265	FAM169B	-	family with sequence similarity 169, member B	protein-coding
19-PTNLD28-TUMOR_peak_67291	chr3	28100769	28101035	+	17.95802	NA	Intergenic	L1PA3|LINE|L1	-182222	NM_182523	152100	Hs.444724	NM_182523		CMC1	C3orf68	C-x(9)-C motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_98281	chr8	38614188	38614695	+	17.95802	NA	intron (NM_001146216, intron 1 of 12)	CpG	28737	NM_001146216	6867	Hs.279245	NM_006283	HPRD:10391	TACC1	Ga55	transforming, acidic coiled-coil containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40807	chr17	27083528	27083705	+	17.95802	NA	3' UTR (NM_001288631, exon 4 of 4)	3' UTR (NM_001288631, exon 4 of 4)	12593	NM_004295	9618	Hs.8375	NM_004295	HPRD:03915	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_84927	chr6	3767865	3768093	+	17.95802	NA	Intergenic	AluSg|SINE|Alu	-15733	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53128	chr2	65297395	65297855	+	17.95802	NA	intron (NM_015147, intron 2 of 6)	intron (NM_015147, intron 2 of 6)	14130	NM_015147	23177	Hs.709257	NM_015147	HPRD:13808	CEP68	KIAA0582	centrosomal protein 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_84464	chr5	178872593	178872877	+	17.95802	NA	Intergenic	Intergenic	-100304	NM_014244	9509	Hs.23871	NM_014244	HPRD:05173	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif, 2	protein-coding
19-PTNLD28-TUMOR_peak_42170	chr17	47988063	47988242	+	17.95162	NA	Intergenic	Intergenic	-58410	NM_138281	1748	Hs.591167	NM_001934	HPRD:03553	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_42096	chr17	47113074	47113625	+	17.95162	NA	intron (NM_001160423, intron 5 of 12)	CpG	38575	NM_001160423	10642	Hs.144936	NM_006546	HPRD:09752	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin-like growth factor 2 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_15982	chr10	122670918	122671069	+	17.95110	NA	intron (NR_049879, intron 3 of 4)	L1PA3|LINE|L1	-60302	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36695	chr16	20818101	20818349	+	17.94163	NA	promoter-TSS (NM_001142725)	promoter-TSS (NM_001142725)	-430	NM_001142725	112479	Hs.248437	NM_080663	HPRD:14456	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
19-PTNLD28-TUMOR_peak_57535	chr2	192543472	192543686	+	17.93883	NA	intron (NM_001031716, intron 1 of 5)	intron (NM_001031716, intron 1 of 5)	717	NR_045623	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_75863	chr4	79215208	79215378	+	17.93839	NA	intron (NM_001166133, intron 14 of 41)	intron (NM_001166133, intron 14 of 41)	236569	NM_001166133	80144	Hs.369448	NM_020875	HPRD:06382	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_59914	chr20	15594402	15594595	+	17.93839	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	416994	NM_001033087	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_21260	chr11	113601727	113601884	+	17.93839	NA	Intergenic	Intergenic	-24710	NM_001288752	80975	Hs.46720	NM_030770	HPRD:05995	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
19-PTNLD28-TUMOR_peak_46172	chr18	65218523	65218657	+	17.93839	NA	intron (NR_033921, intron 1 of 4)	intron (NR_033921, intron 1 of 4)	-34623	NM_032160	92126	Hs.124673	NM_032160	HPRD:10720	DSEL	C18orf4	dermatan sulfate epimerase-like	protein-coding
19-PTNLD28-TUMOR_peak_28577	chr13	79799729	79799977	+	17.93839	NA	Intergenic	Intergenic	180503	NM_001286632	64062	Hs.558528	NM_018605	HPRD:12611	RBM26	ARRS2|C13orf10|PPP1R132|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
19-PTNLD28-TUMOR_peak_83385	chr5	153963496	153963624	+	17.93839	NA	Intergenic	Intergenic	12072	NR_036094	100422950		NR_036094	miRBase:MI0014165	MIR3141	-	microRNA 3141	ncRNA
19-PTNLD28-TUMOR_peak_97376	chr8	18422493	18422657	+	17.93839	NA	intron (NM_015310, intron 14 of 15)	intron (NM_015310, intron 14 of 15)	173820	NM_000015	10	Hs.2	NM_000015	HPRD:02000	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_61389	chr20	44669664	44669833	+	17.93839	NA	intron (NM_001134771, intron 7 of 25)	intron (NM_001134771, intron 7 of 25)	11927	NM_020708	57468	Hs.21413	NM_020708	HPRD:09469	SLC12A5	KCC2	solute carrier family 12 (potassium/chloride transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_109373	chrX	123890873	123891027	+	17.93839	NA	intron (NM_001163278, intron 3 of 31)	L1PA3|LINE|L1	206716	NM_001163279	10178	Hs.23796	NM_014253	HPRD:06669	TENM1	ODZ1|ODZ3|TEN-M1|TNM|TNM1	teneurin transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45399	chr18	41729716	41729962	+	17.93839	NA	Intergenic	Intergenic	381823	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_76485	chr4	106540391	106540605	+	17.93839	NA	intron (NM_001242729, intron 3 of 13)	MLT1H|LTR|ERVL-MaLR	57750	NR_046840	100874374	Hs.668908	NR_046840		ARHGEF38-IT1	-	ARHGEF38 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_78100	chr4	175590522	175590712	+	17.93839	NA	intron (NM_001042543, intron 7 of 8)	intron (NM_001042543, intron 7 of 8)	-146568	NM_000860	3248	Hs.596913	NM_000860	HPRD:03406	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	hydroxyprostaglandin dehydrogenase 15-(NAD)	protein-coding
19-PTNLD28-TUMOR_peak_33052	chr15	35917184	35917338	+	17.93839	NA	intron (NR_038251, intron 1 of 2)	intron (NR_038251, intron 1 of 2)	-78857	NM_001141972	89978	Hs.107196	NM_080650	HPRD:14443	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
19-PTNLD28-TUMOR_peak_67507	chr3	36742528	36742697	+	17.93839	NA	Intergenic	Intergenic	38740	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_82299	chr5	134599082	134599260	+	17.93839	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	-15304	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_109325	chrX	119403303	119403514	+	17.93839	NA	intron (NM_001104545, intron 5 of 6)	intron (NM_001104545, intron 5 of 6)	18798	NM_001184742	10009	Hs.143604	NM_006777	HPRD:02269	ZBTB33	ZNF-kaiso|ZNF348	zinc finger and BTB domain containing 33	protein-coding
19-PTNLD28-TUMOR_peak_58308	chr2	217425826	217425953	+	17.93839	NA	Intergenic	FLAM_C|SINE|Alu	45772	NR_110392	101928232	Hs.694592	NR_110392	ENSG00000224391	LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
19-PTNLD28-TUMOR_peak_74592	chr4	14918726	14918930	+	17.93839	NA	intron (NR_038857, intron 7 of 7)	intron (NR_038857, intron 7 of 7)	84841	NR_038857	441009	Hs.535004	NR_038857	ENSG00000247624	CPEB2-AS1	-	CPEB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_21943	chr11	126188234	126188455	+	17.93839	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	14697	NM_014026	28960	Hs.504249	NM_014026	HPRD:16787	DCPS	DCS1|HINT-5|HINT5|HSL1	decapping enzyme, scavenger	protein-coding
19-PTNLD28-TUMOR_peak_94927	chr7	116772906	116773050	+	17.93839	NA	intron (NM_018412, intron 6 of 14)	L3|LINE|CR1	12668	NR_109981	93654	Hs.628891	NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_21717	chr11	122060002	122060213	+	17.93839	NA	intron (NR_024430, intron 1 of 3)	intron (NR_024430, intron 1 of 3)	13663	NR_024430	399959	Hs.44098	NR_024430	ENSG00000255248	MIR100HG	AGD1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_41056	chr17	33288408	33288617	+	17.93839	NA	promoter-TSS (NM_052857)	promoter-TSS (NM_052857)	16	NM_006584	10693	Hs.73072	NM_006584	HPRD:09873	CCT6B	CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303	chaperonin containing TCP1, subunit 6B (zeta 2)	protein-coding
19-PTNLD28-TUMOR_peak_39300	chr16	87818592	87818764	+	17.93839	NA	Intergenic	Intergenic	-5924	NR_120309	102724467	Hs.587857	NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
19-PTNLD28-TUMOR_peak_21591	chr11	119443332	119443513	+	17.93839	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-149176	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
19-PTNLD28-TUMOR_peak_42379	chr17	53405161	53405331	+	17.93839	NA	Intergenic	LTR32|LTR|ERVL	62925	NM_002126	3131	Hs.196952	NM_002126	HPRD:00797	HLF	-	hepatic leukemia factor	protein-coding
19-PTNLD28-TUMOR_peak_26739	chr12	121772703	121772866	+	17.93839	NA	intron (NM_016237, intron 7 of 16)	intron (NM_016237, intron 7 of 16)	17481	NM_016237	51433	Hs.7101	NM_016237	HPRD:10453	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_58678	chr2	227538116	227538433	+	17.93839	NA	Intergenic	Intergenic	-14765	NR_049887	100847053		NR_049887	miRBase:MI0019309	MIR5702	-	microRNA 5702	ncRNA
19-PTNLD28-TUMOR_peak_89916	chr6	149450906	149451174	+	17.93839	NA	Intergenic	Intergenic	-88719	NM_001292035	23118	Hs.269775	NM_015093	HPRD:05483	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_109613	chrX	137940737	137940914	+	17.93839	NA	intron (NM_001139500, intron 2 of 6)	intron (NM_001139500, intron 2 of 6)	8892	NM_001139502	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_12965	chr10	36202668	36202807	+	17.93839	NA	Intergenic	L1MC3|LINE|L1	135507	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_20358	chr11	82406847	82407054	+	17.93839	NA	Intergenic	Intergenic	37956	NM_175885	220382	Hs.448218	NM_175885	HPRD:14575	FAM181B	-	family with sequence similarity 181, member B	protein-coding
19-PTNLD28-TUMOR_peak_100908	chr8	130019660	130019839	+	17.93839	NA	Intergenic	Intergenic	233737	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_100115	chr8	111470089	111470322	+	17.93839	NA	Intergenic	L3|LINE|CR1	-483246	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_109399	chrX	127938617	127938810	+	17.93839	NA	Intergenic	AluY|SINE|Alu	718769	NM_001282874	6594	Hs.152292	NM_003069	HPRD:02055	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
19-PTNLD28-TUMOR_peak_66174	chr3	1232354	1232567	+	17.93839	NA	intron (NM_001289080, intron 2 of 22)	intron (NM_001289080, intron 2 of 22)	98118	NM_001289081	27255	Hs.387300	NM_014461	HPRD:06242	CNTN6	NB3	contactin 6	protein-coding
19-PTNLD28-TUMOR_peak_67943	chr3	46830394	46830525	+	17.93839	NA	Intergenic	L1HS|LINE|L1	-44214	NM_199183	377047	Hs.667712	NM_199183		PRSS45	TESSP5	protease, serine, 45	protein-coding
19-PTNLD28-TUMOR_peak_92121	chr7	40131851	40132125	+	17.93839	NA	intron (NM_031267, intron 12 of 13)	MIR|SINE|MIR	42263	NM_138701	136647	Hs.654989	NM_138701		MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_109093	chrX	106814919	106815140	+	17.93839	NA	intron (NM_032428, intron 13 of 15)	intron (NM_032428, intron 13 of 15)	-25978	NR_046750	100874122	Hs.600967	NR_046750		FRMPD3-AS1	-	FRMPD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45403	chr18	42144890	42145307	+	17.93839	NA	Intergenic	L1MEg|LINE|L1	-33436	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_107880	chrX	30639384	30639521	+	17.93839	NA	Intergenic	LTR41|LTR|ERVL	-32024	NM_203391	2710	Hs.1466	NM_000167	HPRD:08363	GK	GK1|GKD	glycerol kinase	protein-coding
19-PTNLD28-TUMOR_peak_95024	chr7	125666887	125667153	+	17.93839	NA	Intergenic	Intergenic	-762675	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
19-PTNLD28-TUMOR_peak_90119	chr6	153439860	153440029	+	17.93839	NA	intron (NM_012419, intron 1 of 4)	L2|LINE|L2	12445	NM_012419	26575	Hs.166313	NM_012419	HPRD:06223	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
19-PTNLD28-TUMOR_peak_35078	chr15	88021071	88021259	+	17.93839	NA	Intergenic	Intergenic	-98995	NR_026869	145978	Hs.350808	NM_152454	HPRD:08101	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
19-PTNLD28-TUMOR_peak_104082	chr9	83689257	83689434	+	17.93839	NA	Intergenic	Intergenic	614251	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_76628	chr4	112563371	112563497	+	17.93839	NA	Intergenic	Intergenic	-503119	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_23027	chr12	10787122	10787268	+	17.93839	NA	exon (NM_018423, exon 3 of 11)	exon (NM_018423, exon 3 of 11)	-20987	NM_018048	55110	Hs.104650	NM_018048		MAGOHB	MGN2|mago|magoh	mago-nashi homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_65169	chr22	32130636	32130843	+	17.93839	NA	intron (NM_173566, intron 2 of 8)	L3|LINE|CR1	15381	NM_173566	253143	Hs.438906	NM_173566	HPRD:14665	PRR14L	C22orf30	proline rich 14-like	protein-coding
19-PTNLD28-TUMOR_peak_32606	chr15	24571770	24572009	+	17.93839	NA	Intergenic	Intergenic	-156836	NR_026647	791115	Hs.560378	NR_026647	ENSG00000260551	PWRN2	NCRNA00199	Prader-Willi region non-protein coding RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_31943	chr14	98006325	98006476	+	17.93839	NA	intron (NR_110166, intron 3 of 4)	intron (NR_110166, intron 3 of 4)	81247	NR_110166	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_100114	chr8	111274255	111274556	+	17.93839	NA	Intergenic	Intergenic	-287446	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_79458	chr5	34924173	34924302	+	17.93839	NA	intron (NM_018321, intron 8 of 9)	intron (NM_018321, intron 8 of 9)	-5461	NM_194283	134218	Hs.131887	NM_194283	HPRD:14056	DNAJC21	DNAJA5|GS3|JJJ1	DnaJ (Hsp40) homolog, subfamily C, member 21	protein-coding
19-PTNLD28-TUMOR_peak_87262	chr6	38639777	38639930	+	17.93839	NA	Intergenic	MER20B|DNA|hAT-Charlie	31099	NM_006708	2739	Hs.268849	NM_006708	HPRD:00730	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
19-PTNLD28-TUMOR_peak_33512	chr15	49086917	49087076	+	17.93839	NA	intron (NM_001194998, intron 6 of 26)	intron (NM_001194998, intron 6 of 26)	16347	NM_001194998	22995	Hs.443005	NM_014985	HPRD:16778	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152kDa	protein-coding
19-PTNLD28-TUMOR_peak_25936	chr12	104765289	104765426	+	17.93839	NA	Intergenic	Intergenic	67847	NM_001008394	493861	Hs.659857	NM_001008394	HPRD:17415	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
19-PTNLD28-TUMOR_peak_83326	chr5	152271409	152271531	+	17.93839	NA	intron (NR_109877, intron 2 of 4)	L1HS|LINE|L1	80439	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19-PTNLD28-TUMOR_peak_99206	chr8	74241594	74241751	+	17.93839	NA	intron (NR_125388, intron 3 of 5)	MIR|SINE|MIR	27024	NR_125388	101926926	Hs.640090	NR_125388		LOC101926926	-	uncharacterized LOC101926926	ncRNA
19-PTNLD28-TUMOR_peak_17292	chr11	13119691	13119900	+	17.93839	NA	Intergenic	Intergenic	88825	NM_001080521	644943	Hs.134650	NM_001080521		RASSF10	-	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
19-PTNLD28-TUMOR_peak_10950	chr1	233926794	233927095	+	17.93839	NA	Intergenic	Intergenic	-113514	NM_173508	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_52257	chr2	39368943	39369318	+	17.93839	NA	Intergenic	Intergenic	-21526	NM_005633	6654	Hs.709893	NM_005633	HPRD:01681	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_69371	chr3	98361731	98361868	+	17.93839	NA	Intergenic	LTR2B|LTR|ERV1	-49344	NM_000097	1371	Hs.476982	NM_000097	HPRD:00417	CPOX	CPO|CPX|HCP	coproporphyrinogen oxidase	protein-coding
19-PTNLD28-TUMOR_peak_59404	chr20	736676	736901	+	17.93839	NA	Intergenic	LTR8|LTR|ERV1	12440	NM_033409	113278	Hs.283865	NM_033409	HPRD:09843	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 (riboflavin transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_74673	chr4	17850663	17850776	+	17.93839	NA	intron (NM_153686, intron 6 of 6)	L1P1|LINE|L1	38283	NM_022346	64151	Hs.567567	NM_022346	HPRD:12097	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex, subunit G	protein-coding
19-PTNLD28-TUMOR_peak_13578	chr10	51060281	51060448	+	17.93839	NA	intron (NM_003631, intron 13 of 17)	intron (NM_003631, intron 13 of 17)	-89939	NM_001143996	55753	Hs.17860	NM_018245	HPRD:07704	OGDHL	-	oxoglutarate dehydrogenase-like	protein-coding
19-PTNLD28-TUMOR_peak_33922	chr15	63510730	63510940	+	17.93839	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	29107	NM_016530	51762	Hs.389733	NM_016530	HPRD:11476	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_78253	chr4	184621681	184621848	+	17.93839	NA	intron (NM_199053, intron 25 of 30)	intron (NM_199053, intron 25 of 30)	41344	NM_199053	60684	Hs.443240	NM_021942	HPRD:10968	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
19-PTNLD28-TUMOR_peak_108092	chrX	44927920	44928099	+	17.93839	NA	intron (NR_111960, intron 15 of 27)	CT-rich|Low_complexity|Low_complexity	132137	NM_024689	79742	Hs.98321	NM_024689	HPRD:06524	CXorf36	4930578C19Rik|DIA1R|EPQL1862|PRO3743|bA435K1.1	chromosome X open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_110131	chrY	4734830	4735004	+	17.93839	NA	Intergenic	L1PA3|LINE|L1	-133350	NM_032971	83259	Hs.661308	NM_032971	HPRD:11847	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_109525	chrX	133776543	133776751	+	17.93839	NA	intron (NM_021796, intron 1 of 2)	L2c|LINE|L2	15866	NM_021796	10761	Hs.496811	NM_021796	HPRD:02245	PLAC1	CT92|OOSP2L	placenta-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_69448	chr3	100707105	100707299	+	17.93839	NA	intron (NM_015429, intron 1 of 34)	intron (NM_015429, intron 1 of 34)	5132	NM_015429	25890	Hs.477015	NM_015429	HPRD:09380	ABI3BP	NESHBP|TARSH	ABI family, member 3 (NESH) binding protein	protein-coding
19-PTNLD28-TUMOR_peak_104231	chr9	87326945	87327254	+	17.93839	NA	intron (NM_001007097, intron 6 of 12)	intron (NM_001007097, intron 6 of 12)	41807	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_21138	chr11	111712303	111712429	+	17.93839	NA	intron (NM_001077691, intron 9 of 14)	intron (NM_001077691, intron 9 of 14)	29638	NM_001077691	79796	Hs.745155	NM_024740		ALG9	CDG1L|DIBD1|LOH11CR1J	ALG9, alpha-1,2-mannosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_100539	chr8	124618719	124618853	+	17.93839	NA	Intergenic	Intergenic	46404	NM_001081675	340359	Hs.450252	NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch-like family member 38	protein-coding
19-PTNLD28-TUMOR_peak_72483	chr3	177096963	177097088	+	17.93839	NA	Intergenic	Intergenic	-62684	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_23213	chr12	14538079	14538312	+	17.93839	NA	5' UTR (NM_181352, exon 1 of 15)	5' UTR (NM_181352, exon 1 of 15)	197	NM_181352	55729	Hs.504856	NM_018179	HPRD:09811	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_39787	chr17	4231019	4231234	+	17.93839	NA	intron (NM_003342, intron 1 of 5)	intron (NM_003342, intron 1 of 5)	38843	NM_003342	7326	Hs.741319	NM_003342	HPRD:03340	UBE2G1	E217K|UBC7|UBE2G	ubiquitin-conjugating enzyme E2G 1	protein-coding
19-PTNLD28-TUMOR_peak_53646	chr2	77232800	77232967	+	17.93839	NA	intron (NR_110284, intron 3 of 3)	THE1B|LTR|ERVL-MaLR	19792	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
19-PTNLD28-TUMOR_peak_21233	chr11	113176563	113176685	+	17.93839	NA	Intergenic	Intergenic	-8627	NM_017868	54970	Hs.288772	NM_017868	HPRD:15577	TTC12	TPARM	tetratricopeptide repeat domain 12	protein-coding
19-PTNLD28-TUMOR_peak_22616	chr12	4881386	4881653	+	17.93839	NA	intron (NM_017417, intron 10 of 10)	intron (NM_017417, intron 10 of 10)	-36823	NM_002235	3742	Hs.306190	NM_002235	HPRD:08884	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel, shaker-related subfamily, member 6	protein-coding
19-PTNLD28-TUMOR_peak_57438	chr2	190591092	190591222	+	17.93839	NA	intron (NM_144708, intron 12 of 22)	FLAM_A|SINE|Alu	-36349	NR_102429	101409258	Hs.738558	NR_102429		OSGEPL1-AS1	-	OSGEPL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45665	chr18	46886175	46886412	+	17.93839	NA	intron (NM_017653, intron 6 of 16)	intron (NM_017653, intron 6 of 16)	100786	NM_017653	54808	Hs.162996	NM_017653	HPRD:08469	DYM	DMC|SMC	dymeclin	protein-coding
19-PTNLD28-TUMOR_peak_82225	chr5	133647221	133647431	+	17.93839	NA	intron (NM_001300853, intron 6 of 12)	intron (NM_001300853, intron 6 of 12)	55439	NM_016508	51265	Hs.719926	NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin-dependent kinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_59659	chr20	5186146	5186279	+	17.93839	NA	Intergenic	Intergenic	78805	NM_003818	8760	Hs.126857	NM_003818	HPRD:09150	CDS2	-	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding
19-PTNLD28-TUMOR_peak_99536	chr8	95021441	95021558	+	17.93839	NA	Intergenic	L1PA4|LINE|L1	92220	NM_001161781	54704	Hs.22265	NM_018444	HPRD:16185	PDP1	PDH|PDP|PDPC|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_109577	chrX	135152895	135153083	+	17.93839	NA	Intergenic	L2c|LINE|L2	-75872	NR_027621	2273	Hs.435369	NM_001449	HPRD:02157	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
19-PTNLD28-TUMOR_peak_4495	chr1	80841409	80841551	+	17.93839	NA	Intergenic	Intergenic	-1323975	NM_001297704	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_12682	chr10	30084880	30085063	+	17.93839	NA	Intergenic	Intergenic	-60241	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_35446	chr15	99752702	99752887	+	17.93839	NA	intron (NM_001288615, intron 8 of 13)	intron (NM_001288615, intron 8 of 13)	37030	NM_001288615	64927	Hs.513195	NM_022905	HPRD:07777	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
19-PTNLD28-TUMOR_peak_77342	chr4	142430653	142430769	+	17.93839	NA	Intergenic	L1PA4|LINE|L1	-127038	NM_172175	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_89747	chr6	142693594	142693775	+	17.93839	NA	intron (NM_001032394, intron 4 of 24)	intron (NM_001032394, intron 4 of 24)	70628	NM_001032395	57211	Hs.743302	NM_020455	HPRD:17059	GPR126	APG1|DREG|PS1TP2|VIGR	G protein-coupled receptor 126	protein-coding
19-PTNLD28-TUMOR_peak_11364	chr1	243822008	243822156	+	17.93839	NA	intron (NM_181690, intron 3 of 13)	AluJr|SINE|Alu	184502	NM_181690	10000	Hs.498292	NM_005465	HPRD:06441	AKT3	MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	v-akt murine thymoma viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_13577	chr10	51039512	51039716	+	17.93839	NA	intron (NM_003631, intron 16 of 17)	MER21C|LTR|ERVL	-69189	NM_001143996	55753	Hs.17860	NM_018245	HPRD:07704	OGDHL	-	oxoglutarate dehydrogenase-like	protein-coding
19-PTNLD28-TUMOR_peak_81313	chr5	98736370	98736545	+	17.93839	NA	Intergenic	Intergenic	-133237	NR_110562	102724855	Hs.519477	NR_110562		CTD-2151A2.1	-	uncharacterized LOC102724855	ncRNA
19-PTNLD28-TUMOR_peak_17783	chr11	29830721	29831006	+	17.93839	NA	Intergenic	L2|LINE|L2	207714	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_20785	chr11	100211711	100211948	+	17.93839	NA	exon (NM_001243270, exon 22 of 24)	exon (NM_001243270, exon 22 of 24)	-346578	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_72498	chr3	177216180	177216369	+	17.93839	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	56565	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_42350	chr17	51550065	51550249	+	17.93839	NA	Intergenic	Intergenic	-350082	NM_032559	84643	Hs.226805	NM_032559	HPRD:10053	KIF2B	-	kinesin family member 2B	protein-coding
19-PTNLD28-TUMOR_peak_109120	chrX	107374819	107375045	+	17.93839	NA	intron (NM_052936, intron 4 of 12)	intron (NM_052936, intron 4 of 12)	40033	NM_178270	115201	Hs.8763	NM_052936	HPRD:06455	ATG4A	APG4A|AUTL2	autophagy related 4A, cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_72181	chr3	167371677	167371842	+	17.93839	NA	promoter-TSS (NM_178824)	promoter-TSS (NM_178824)	-470	NM_178824	151790	Hs.213762	NM_178824	HPRD:08160	WDR49	-	WD repeat domain 49	protein-coding
19-PTNLD28-TUMOR_peak_1752	chr1	27577058	27577373	+	17.93839	NA	intron (NM_001276252, intron 1 of 15)	intron (NM_001276252, intron 1 of 15)	16208	NM_001276252	23038	Hs.469154	NM_015023	HPRD:10307	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_88990	chr6	107922234	107922404	+	17.93839	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	111002	NM_018013	55084	Hs.445244	NM_018013	HPRD:07650	SOBP	JXC1|MRAMS	sine oculis binding protein homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_29705	chr14	31176004	31176198	+	17.93839	NA	intron (NM_001283033, intron 15 of 21)	intron (NM_001283033, intron 15 of 21)	84576	NM_001257376	23256	Hs.369168	NM_016106	HPRD:10210	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_99970	chr8	106113125	106113270	+	17.93839	NA	Intergenic	Intergenic	-217950	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_35526	chr15	101741655	101741947	+	17.93839	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	50336	NM_014918	22856	Hs.110488	NM_014918	HPRD:10493	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_69962	chr3	115533743	115533871	+	17.93839	NA	intron (NM_002338, intron 6 of 6)	intron (NM_002338, intron 6 of 6)	191656	NM_001130064	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_9868	chr1	209269424	209269703	+	17.93839	NA	Intergenic	Intergenic	-332605	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_41402	chr17	38883849	38883998	+	17.93839	NA	Intergenic	Intergenic	-23921	NM_019016	192666	Hs.87383	NM_019016	HPRD:09668	KRT24	K24|KA24	keratin 24	protein-coding
19-PTNLD28-TUMOR_peak_82398	chr5	136806460	136806627	+	17.93839	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	28475	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_107430	chrX	4297248	4297426	+	17.93839	NA	Intergenic	LTR8|LTR|ERV1	254276	NR_110390	101928201	Hs.586488	NR_110390	ENSG00000236513	LOC101928201	-	uncharacterized LOC101928201	ncRNA
19-PTNLD28-TUMOR_peak_99466	chr8	90870185	90870372	+	17.93839	NA	Intergenic	Intergenic	-43818	NM_004337	734	Hs.436445	NM_004337	HPRD:06853	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
19-PTNLD28-TUMOR_peak_44863	chr18	20445384	20445620	+	17.93839	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-67793	NM_002894	5932	Hs.546282	NM_002894	HPRD:04990	RBBP8	COM1|CTIP|JWDS|RIM|SAE2|SCKL2	retinoblastoma binding protein 8	protein-coding
19-PTNLD28-TUMOR_peak_30128	chr14	48744552	48744699	+	17.93839	NA	Intergenic	L1M4b|LINE|L1	-480408	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_14428	chr10	77753443	77753640	+	17.93839	NA	intron (NM_032024, intron 1 of 5)	intron (NM_032024, intron 1 of 5)	211022	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_45150	chr18	30422716	30423020	+	17.93839	NA	Intergenic	LTR27|LTR|ERV1	-69894	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_63570	chr21	40497951	40498096	+	17.93839	NA	Intergenic	Intergenic	57417	NM_003720	8624	Hs.473838	NM_003720	HPRD:05598	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome (prosome, macropain) assembly chaperone 1	protein-coding
19-PTNLD28-TUMOR_peak_75152	chr4	48637385	48637603	+	17.93839	NA	intron (NM_015030, intron 3 of 63)	L2c|LINE|L2	144822	NM_015030	285527	Hs.595553	NM_015030	ENSG00000075539	FRYL	KIAA0826	FRY-like	protein-coding
19-PTNLD28-TUMOR_peak_1280	chr1	20753545	20753723	+	17.93839	NA	intron (NR_033887, intron 1 of 11)	intron (NR_033887, intron 1 of 11)	1653	NR_033887	339505	Hs.633269	NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
19-PTNLD28-TUMOR_peak_69222	chr3	82149633	82149800	+	17.93839	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-338766	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_77957	chr4	167772068	167772231	+	17.93839	NA	intron (NM_016950, intron 7 of 11)	L1HS|LINE|L1	383428	NM_001204353	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_107626	chrX	14866401	14866744	+	17.93839	NA	intron (NM_001018113, intron 7 of 9)	MER11D|LTR|ERVK	24612	NM_001018113	2187	Hs.554740	NM_152633	HPRD:06557	FANCB	FA2|FAAP90|FAAP95|FAB|FACB	Fanconi anemia, complementation group B	protein-coding
19-PTNLD28-TUMOR_peak_66224	chr3	3950555	3950692	+	17.93839	NA	Intergenic	L1PA4|LINE|L1	109502	NM_020873	57633	Hs.163244	NM_020873	HPRD:14320	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_63070	chr21	30560360	30560579	+	17.93839	NA	Intergenic	MLT2B4|LTR|ERVL	-5346	NR_027072	193629	Hs.720711	NM_138968	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA
19-PTNLD28-TUMOR_peak_54736	chr2	108010065	108010246	+	17.93839	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	432428	NR_024439	729121	Hs.386155	NR_024439	ENSG00000230651	RGPD4-AS1	-	RGPD4 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_81278	chr5	96575579	96575696	+	17.93839	NA	Intergenic	L1PA6|LINE|L1	-56632	NM_001159749	55781	Hs.27021	NM_018343	HPRD:10193	RIOK2	RIO2	RIO kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_87902	chr6	49644484	49644611	+	17.93839	NA	Intergenic	LTR26|LTR|ERV1	36756	NM_001142407	7180	Hs.2042	NM_003296	HPRD:01758	CRISP2	CRISP-2|CT36|GAPDL5|TPX1|TSP1	cysteine-rich secretory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_75415	chr4	57156049	57156378	+	17.93839	NA	intron (NM_020722, intron 3 of 10)	intron (NM_020722, intron 3 of 10)	97461	NM_001286669	132949	Hs.104347	NM_181806	HPRD:12398	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_29370	chr14	21482910	21483169	+	17.93839	NA	Intergenic	Intergenic	8506	NR_106774	102465428		NR_106774		MIR6717	hsa-mir-6717	microRNA 6717	ncRNA
19-PTNLD28-TUMOR_peak_72445	chr3	175382883	175383029	+	17.93839	NA	intron (NM_207015, intron 11 of 13)	intron (NM_207015, intron 11 of 13)	111165	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107578	chrX	13155998	13156126	+	17.93839	NA	Intergenic	L1PA3|LINE|L1	-93145	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_15651	chr10	113246515	113246694	+	17.93839	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	409814	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_97715	chr8	23981018	23981182	+	17.93839	NA	Intergenic	Intergenic	-170480	NM_021777	10863	Hs.174030	NM_014265	HPRD:08391	ADAM28	ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
19-PTNLD28-TUMOR_peak_18949	chr11	61938702	61938937	+	17.93839	NA	Intergenic	Intergenic	-18891	NM_006552	10648	Hs.202686	NM_006552	HPRD:18025	SCGB1D1	LIPA|LPHA|LPNA	secretoglobin, family 1D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22893	chr12	8043590	8043859	+	17.93839	NA	promoter-TSS (NM_001286237)	promoter-TSS (NM_001286237)	68	NM_001286237	144195	Hs.655169	NM_153449	HPRD:11573	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
19-PTNLD28-TUMOR_peak_12126	chr10	14368723	14368847	+	17.93839	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	4081	NM_018027	55691	Hs.330463	NM_018027	HPRD:13553	FRMD4A	FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_37678	chr16	48545681	48545881	+	17.93839	NA	Intergenic	Intergenic	98339	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51937	chr2	30431390	30431522	+	17.93839	NA	Intergenic	Intergenic	-22941	NM_030915	81606	Hs.567598	NM_030915	HPRD:13965	LBH	-	limb bud and heart development	protein-coding
19-PTNLD28-TUMOR_peak_70868	chr3	132071526	132071706	+	17.93839	NA	exon (NM_001099, exon 9 of 10)	exon (NM_001099, exon 9 of 10)	35405	NM_001134194	55	Hs.433060	NM_001099	HPRD:01378	ACPP	5'-NT|ACP-3|ACP3	acid phosphatase, prostate	protein-coding
19-PTNLD28-TUMOR_peak_15748	chr10	115911375	115911502	+	17.93839	NA	intron (NM_018017, intron 3 of 15)	MER44C|DNA|TcMar-Tigger	22500	NR_031747	100302224		NR_031747	miRBase:MI0010629	MIR2110	hsa-mir-2110	microRNA 2110	ncRNA
19-PTNLD28-TUMOR_peak_90342	chr6	159674093	159674305	+	17.93839	NA	intron (NM_032532, intron 17 of 22)	intron (NM_032532, intron 17 of 22)	-83160	NR_121668	101929122	Hs.134215	NR_121668		LOC101929122	-	uncharacterized LOC101929122	ncRNA
19-PTNLD28-TUMOR_peak_60319	chr20	25417832	25418228	+	17.93839	NA	intron (NM_021067, intron 5 of 6)	L1MB2|LINE|L1	29707	NM_021067	9837	Hs.658464	NM_021067	HPRD:11067	GINS1	PSF1	GINS complex subunit 1 (Psf1 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_66882	chr3	15187128	15187387	+	17.93839	NA	Intergenic	LTR5A|LTR|ERVK	-46602	NM_022340	64145	Hs.475565	NM_022340	HPRD:15732	ZFYVE20	Rabenosyn-5	zinc finger, FYVE domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_82924	chr5	143801085	143801232	+	17.93839	NA	intron (NM_020768, intron 3 of 3)	intron (NM_020768, intron 3 of 3)	250721	NM_020768	57528	Hs.661870	NM_020768		KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_93604	chr7	78853430	78853711	+	17.93839	NA	intron (NM_001301128, intron 1 of 20)	intron (NM_001301128, intron 1 of 20)	215266	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_100425	chr8	122101724	122101923	+	17.93839	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-277514	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_106047	chr9	127414956	127415195	+	17.93839	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-5640	NR_038975	100379345	Hs.660412	NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90107	chr6	153033666	153033779	+	17.93839	NA	intron (NM_025107, intron 1 of 1)	L1HS|LINE|L1	14692	NM_025107	80177	Hs.18160	NM_025107	HPRD:17617	MYCT1	MTLC	myc target 1	protein-coding
19-PTNLD28-TUMOR_peak_75337	chr4	54643568	54643707	+	17.93839	NA	Intergenic	Intergenic	184514	NR_046827	100873955	Hs.351074	NR_046827		LNX1-AS2	-	LNX1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_27918	chr13	40634459	40634718	+	17.93839	NA	Intergenic	Intergenic	-121358	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
19-PTNLD28-TUMOR_peak_46232	chr18	69663254	69663393	+	17.93839	NA	Intergenic	Intergenic	-417131	NR_038326	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	ncRNA
19-PTNLD28-TUMOR_peak_99299	chr8	81152945	81153151	+	17.93839	NA	promoter-TSS (NR_049894)	promoter-TSS (NR_049894)	-576	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_105404	chr9	113553442	113553678	+	17.93839	NA	intron (NM_001166281, intron 11 of 11)	L1HS|LINE|L1	122509	NM_001166280	4593	Hs.521653	NM_005592	HPRD:03190	MUSK	-	muscle, skeletal, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_42609	chr17	56720600	56720755	+	17.93839	NA	intron (NM_198393, intron 2 of 32)	L2b|LINE|L2	48739	NM_001201457	56155	Hs.390221	NM_031272	ENSG00000121101	TEX14	CT113	testis expressed 14	protein-coding
19-PTNLD28-TUMOR_peak_83415	chr5	154342179	154342364	+	17.93839	NA	intron (NM_001014990, intron 5 of 5)	intron (NM_001014990, intron 5 of 5)	21638	NM_014180	29093	Hs.483924	NM_014180	HPRD:14748	MRPL22	L22mt|MRP-L22|MRP-L25|RPML25	mitochondrial ribosomal protein L22	protein-coding
19-PTNLD28-TUMOR_peak_79416	chr5	33997513	33997721	+	17.93839	NA	intron (NM_014324, intron 4 of 4)	intron (NM_014324, intron 4 of 4)	10603	NM_203382	23600	Hs.508343	NM_014324	HPRD:05134	AMACR	AMACRD|CBAS4|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
19-PTNLD28-TUMOR_peak_92525	chr7	50504269	50504390	+	17.93839	NA	Intergenic	AluJr|SINE|Alu	13759	NM_001287496	63979	Hs.137516	NM_022116	HPRD:10958	FIGNL1	-	fidgetin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_35358	chr15	96343134	96343372	+	17.93839	NA	Intergenic	Intergenic	366931	NR_027133	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
19-PTNLD28-TUMOR_peak_103807	chr9	74421825	74421985	+	17.93839	NA	Intergenic	Intergenic	-38105	NM_001135820	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_108024	chrX	41113058	41113184	+	17.93839	NA	Intergenic	CpG	-79530	NM_001356	1654	Hs.743263	NM_001356	HPRD:02154	DDX3X	DBX|DDX14|DDX3|HLP2	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_27397	chr13	21699079	21699290	+	17.93839	NA	Intergenic	Intergenic	-15469	NM_005870	10284	Hs.524899	NM_005870	HPRD:04256	SAP18	2HOR0202|SAP18P	Sin3A-associated protein, 18kDa	protein-coding
19-PTNLD28-TUMOR_peak_83838	chr5	169694992	169695112	+	17.93839	NA	intron (NM_005565, intron 8 of 20)	intron (NM_005565, intron 8 of 20)	29770	NM_005565	3937	Hs.304475	NM_005565		LCP2	SLP-76|SLP76	lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	protein-coding
19-PTNLD28-TUMOR_peak_98946	chr8	61073372	61073482	+	17.93839	NA	Intergenic	L1PA3|LINE|L1	120527	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
19-PTNLD28-TUMOR_peak_106542	chr9	135682408	135682670	+	17.93839	NA	intron (NM_152572, intron 10 of 12)	intron (NM_152572, intron 10 of 12)	71659	NM_152572	158067	Hs.421340	NM_152572	HPRD:12991	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_99647	chr8	98941289	98941514	+	17.93839	NA	intron (NM_002380, intron 2 of 18)	intron (NM_002380, intron 2 of 18)	60090	NM_002380	4147	Hs.189445	NM_002380	HPRD:03660	MATN2	-	matrilin 2	protein-coding
19-PTNLD28-TUMOR_peak_107787	chrX	22264656	22265061	+	17.93839	NA	intron (NM_000444, intron 21 of 21)	intron (NM_000444, intron 21 of 21)	-26172	NM_152577	158506	Hs.132485	NM_152577	HPRD:06545	ZNF645	CT138|HAKAIL	zinc finger protein 645	protein-coding
19-PTNLD28-TUMOR_peak_66362	chr3	8308432	8308741	+	17.93839	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	234758	NR_033378	100288428	Hs.651576	NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_11998	chr10	11536889	11537185	+	17.93839	NA	intron (NM_001080491, intron 6 of 13)	LTR13|LTR|ERVK	37242	NM_001080491	9712	Hs.498661	NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_102632	chr9	32344562	32344729	+	17.93839	NA	Intergenic	Intergenic	-39956	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_38725	chr16	75063865	75064082	+	17.93839	NA	intron (NM_032268, intron 1 of 4)	AluSz|SINE|Alu	31058	NM_032268	84937	Hs.427284	NM_032268	HPRD:15893	ZNRF1	NIN283	zinc and ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_28937	chr13	106035063	106035187	+	17.93839	NA	Intergenic	L1HS|LINE|L1	-83091	NM_001161814	267012	Hs.381382	NM_172370	HPRD:07591	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
19-PTNLD28-TUMOR_peak_90102	chr6	152749427	152749563	+	17.93839	NA	exon (NM_033071, exon 37 of 146)	exon (NM_033071, exon 37 of 146)	47830	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25566	chr12	92474274	92474583	+	17.93839	NA	intron (NM_001256375, intron 1 of 4)	intron (NM_001256375, intron 1 of 4)	61061	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	C12orf79	-	chromosome 12 open reading frame 79	protein-coding
19-PTNLD28-TUMOR_peak_92020	chr7	36168321	36168501	+	17.93839	NA	Intergenic	Intergenic	-24425	NM_030636	80820	Hs.487994	NM_030636	HPRD:13884	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_18273	chr11	44782514	44782662	+	17.93839	NA	Intergenic	MIRb|SINE|MIR	-3388	NM_130783	90139	Hs.385634	NM_130783	HPRD:17435	TSPAN18	TSPAN	tetraspanin 18	protein-coding
19-PTNLD28-TUMOR_peak_76351	chr4	99388778	99388934	+	17.93839	NA	Intergenic	Intergenic	190956	NM_005723	10098	Hs.118118	NM_005723	HPRD:15513	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
19-PTNLD28-TUMOR_peak_81239	chr5	95828486	95828641	+	17.93839	NA	Intergenic	Intergenic	-59578	NM_000439	5122	Hs.78977	NM_000439	HPRD:01201	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
19-PTNLD28-TUMOR_peak_107548	chrX	11575336	11575520	+	17.93839	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	108393	NM_013427	395	Hs.435291	NM_001174	HPRD:02124	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
19-PTNLD28-TUMOR_peak_30842	chr14	65757642	65757866	+	17.93839	NA	Intergenic	Intergenic	44147	NR_039857	100616176		NR_039857	miRBase:MI0017341	MIR4708	-	microRNA 4708	ncRNA
19-PTNLD28-TUMOR_peak_24905	chr12	62642705	62643111	+	17.93839	NA	Intergenic	Intergenic	-11213	NM_001252079	9958	Hs.434951	NM_006313	HPRD:05293	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
19-PTNLD28-TUMOR_peak_97280	chr8	15501724	15501851	+	17.93839	NA	intron (NM_178234, intron 2 of 9)	intron (NM_178234, intron 2 of 9)	104191	NM_178234	7991	Hs.426324	NM_006765	HPRD:03228	TUSC3	D8S1992|M33|MRT22|MRT7|N33|OST3A	tumor suppressor candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_31624	chr14	90178878	90179016	+	17.93839	NA	Intergenic	7SK|RNA|RNA	-93453	NM_001085471	1112	Hs.434286	NM_005197	HPRD:07533	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19-PTNLD28-TUMOR_peak_105133	chr9	108026758	108027020	+	17.93839	NA	intron (NM_080546, intron 1 of 15)	HAL1|LINE|L1	19995	NM_001286730	23446	Hs.573495	NM_022109	HPRD:16197	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 (choline transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_4556	chr1	84700021	84700154	+	17.93839	NA	intron (NM_001242861, intron 10 of 10)	L1PA3|LINE|L1	52772	NM_001242862	5567	Hs.487325	NM_002731	HPRD:01482	PRKACB	PKA C-beta|PKACB	protein kinase, cAMP-dependent, catalytic, beta	protein-coding
19-PTNLD28-TUMOR_peak_96927	chr8	6658418	6658560	+	17.93839	NA	Intergenic	Intergenic	-34587	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA
19-PTNLD28-TUMOR_peak_45023	chr18	24958449	24958600	+	17.93839	NA	Intergenic	Intergenic	-193222	NM_031422	83539	Hs.44584	NM_031422	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
19-PTNLD28-TUMOR_peak_91889	chr7	31659667	31659831	+	17.93839	NA	intron (NM_194300, intron 8 of 12)	L1PA3|LINE|L1	-66882	NM_006658	10842	Hs.227011	NM_006658	HPRD:06820	PPP1R17	C7orf16|GSBS	protein phosphatase 1, regulatory subunit 17	protein-coding
19-PTNLD28-TUMOR_peak_14767	chr10	89008741	89008908	+	17.93839	NA	intron (NR_024397, intron 4 of 5)	Tigger3c|DNA|TcMar-Tigger	23619	NM_001099338	728118	Hs.710565	NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
19-PTNLD28-TUMOR_peak_28141	chr13	46785953	46786153	+	17.93839	NA	promoter-TSS (NM_001282460)	promoter-TSS (NM_001282460)	-25	NM_001282460	220416	Hs.267765	NM_001024609	HPRD:18580	LRRC63	-	leucine rich repeat containing 63	protein-coding
19-PTNLD28-TUMOR_peak_77148	chr4	139726009	139726203	+	17.93839	NA	Intergenic	Intergenic	-210807	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_45061	chr18	26977620	26977865	+	17.93839	NA	Intergenic	LTR29|LTR|ERV1	-901134	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	ncRNA
19-PTNLD28-TUMOR_peak_27572	chr13	27927343	27927641	+	17.93839	NA	Intergenic	Intergenic	-71189	NM_002097	2971	Hs.445977	NM_002097	HPRD:02916	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
19-PTNLD28-TUMOR_peak_16196	chr10	127779481	127779676	+	17.93839	NA	intron (NM_001288975, intron 11 of 18)	intron (NM_001288975, intron 11 of 18)	-117736	NR_102707	101410540	Hs.557889	NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14607	chr10	82040779	82040979	+	17.93839	NA	intron (NM_000429, intron 3 of 8)	intron (NM_000429, intron 3 of 8)	8555	NM_000429	4143	Hs.282670	NM_000429	HPRD:02013	MAT1A	MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_11365	chr1	243912119	243912251	+	17.93839	NA	intron (NM_181690, intron 1 of 13)	intron (NM_181690, intron 1 of 13)	94399	NM_181690	10000	Hs.498292	NM_005465	HPRD:06441	AKT3	MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	v-akt murine thymoma viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_76352	chr4	99547499	99547743	+	17.93839	NA	intron (NM_005723, intron 1 of 7)	L2a|LINE|L2	32191	NM_005723	10098	Hs.118118	NM_005723	HPRD:15513	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
19-PTNLD28-TUMOR_peak_81475	chr5	108419734	108419877	+	17.93839	NA	intron (NM_005246, intron 16 of 19)	L1ME3A|LINE|L1	325870	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_76652	chr4	113303189	113303490	+	17.93839	NA	intron (NM_001253884, intron 3 of 14)	intron (NM_001253884, intron 3 of 14)	84840	NM_025144	80216	Hs.652825	NM_025144	HPRD:09554	ALPK1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_89063	chr6	110026506	110026698	+	17.93839	NA	intron (NM_014845, intron 1 of 22)	intron (NM_014845, intron 1 of 22)	14178	NM_014845	9896	Hs.529959	NM_014845	HPRD:11073	FIG4	ALS11|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_109118	chrX	107279605	107280036	+	17.93839	NA	Intergenic	Intergenic	-8380	NM_182607	340547	Hs.177164	NM_182607	HPRD:06655	VSIG1	1700062D20Rik|GPA34|dJ889N15.1	V-set and immunoglobulin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_91663	chr7	24922705	24922830	+	17.93839	NA	intron (NR_104111, intron 1 of 21)	intron (NR_104111, intron 1 of 21)	9473	NR_104111	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_83314	chr5	151885086	151885252	+	17.93839	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-100329	NM_020167	56923	Hs.731911	NM_020167	HPRD:12003	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_88854	chr6	98395875	98396103	+	17.93839	NA	Intergenic	Intergenic	-76418	NR_031579	100302164		NR_031579	miRBase:MI0003939	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
19-PTNLD28-TUMOR_peak_88124	chr6	56637753	56637923	+	17.93839	NA	intron (NM_001144769, intron 4 of 96)	MLT1F2|LTR|ERVL-MaLR	-22700	NR_046940	100873774		NR_046940	ENSG00000207203	RNU6-71P	RNU6-71	RNA, U6 small nuclear 71, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_100590	chr8	125376591	125376705	+	17.93839	NA	intron (NM_194291, intron 1 of 6)	intron (NM_194291, intron 1 of 6)	8292	NM_194291	157378	Hs.187646	NM_194291		TMEM65	-	transmembrane protein 65	protein-coding
19-PTNLD28-TUMOR_peak_38179	chr16	63422413	63422582	+	17.93839	NA	Intergenic	L1PA2|LINE|L1	-1351758	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_56205	chr2	148946323	148946439	+	17.93839	NA	intron (NM_018328, intron 3 of 14)	L1HS|LINE|L1	-167208	NM_181742	5000	Hs.558364	NM_002552	HPRD:09118	ORC4	ORC4L|ORC4P	origin recognition complex, subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_57105	chr2	176709024	176709207	+	17.93839	NA	Intergenic	Intergenic	157903	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_12531	chr10	26370079	26370238	+	17.93839	NA	intron (NM_017433, intron 14 of 34)	L1PB1|LINE|L1	-135078	NM_000818	2572	Hs.231829	NM_000818	HPRD:11817	GAD2	GAD65	glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)	protein-coding
19-PTNLD28-TUMOR_peak_50471	chr19	57149383	57149648	+	17.93839	NA	Intergenic	CpG	-5012	NM_001193628	147670	Hs.336588	NM_001193628		SMIM17	-	small integral membrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_67095	chr3	21713899	21714078	+	17.93839	NA	intron (NM_024697, intron 1 of 7)	intron (NM_024697, intron 1 of 7)	78828	NM_024697	79750	Hs.21026	NM_024697	HPRD:07990	ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
19-PTNLD28-TUMOR_peak_52837	chr2	55226412	55226551	+	17.93839	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	10989	NM_007008	57142	Hs.637850	NM_007008	HPRD:07259	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
19-PTNLD28-TUMOR_peak_110140	chrY	7123009	7123200	+	17.93839	NA	Intergenic	L1PA2|LINE|L1	-18909	NR_028062	5616	Hs.584730	NM_002760	HPRD:08949	PRKY	PRKXP3|PRKYP	protein kinase, Y-linked, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80759	chr5	74976988	74977151	+	17.93839	NA	intron (NM_152408, intron 9 of 10)	MIR|SINE|MIR	31211	NM_152408	134359	Hs.432726	NM_152408	HPRD:08188	POC5	C5orf37	POC5 centriolar protein	protein-coding
19-PTNLD28-TUMOR_peak_88680	chr6	89058436	89058598	+	17.93839	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-182750	NM_001160258	1268	Hs.75110	NM_016083	HPRD:00259	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_49306	chr19	44952476	44952782	+	17.93839	NA	promoter-TSS (NR_103551)	promoter-TSS (NR_103551)	36	NR_103551	7772	Hs.709348	NM_014518	HPRD:18324	ZNF229	-	zinc finger protein 229	protein-coding
19-PTNLD28-TUMOR_peak_67431	chr3	32671801	32672044	+	17.93839	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-54715	NR_046352	25904	Hs.444851	NM_015442	HPRD:16731	CNOT10	-	CCR4-NOT transcription complex, subunit 10	protein-coding
19-PTNLD28-TUMOR_peak_97290	chr8	16508852	16508972	+	17.93839	NA	Intergenic	L1PA8|LINE|L1	350762	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_74746	chr4	22609102	22609253	+	17.93839	NA	Intergenic	LTR84b|LTR|ERVL	-85360	NR_102355	57733	Hs.653107	NM_020973	HPRD:09428	GBA3	CBG|CBGL1|GLUC|KLRP	glucosidase, beta, acid 3	protein-coding
19-PTNLD28-TUMOR_peak_97317	chr8	17083865	17084047	+	17.93839	NA	Intergenic	Cheshire|DNA|hAT-Charlie	20431	NM_013354	29883	Hs.645009	NM_013354	ENSG00000198791	CNOT7	CAF1|Caf1a|hCAF-1	CCR4-NOT transcription complex, subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_27128	chr12	128265954	128266368	+	17.93839	NA	Intergenic	Intergenic	-100001	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	ncRNA
19-PTNLD28-TUMOR_peak_99358	chr8	83481078	83481277	+	17.93839	NA	Intergenic	L1MEc|LINE|L1	-726656	NM_022133	64089	Hs.492121	NM_022133	HPRD:15411	SNX16	-	sorting nexin 16	protein-coding
19-PTNLD28-TUMOR_peak_39926	chr17	6659250	6659436	+	17.93839	NA	non-coding (NR_046397, exon 1 of 5)	non-coding (NR_046397, exon 1 of 5)	187	NR_046396	54739	Hs.441975	NM_017523	HPRD:06978	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
19-PTNLD28-TUMOR_peak_28692	chr13	94885787	94885962	+	17.93839	NA	intron (NM_005708, intron 4 of 8)	MER44B|DNA|TcMar-Tigger	-45629	NR_046535	100873972	Hs.670344	NR_046535		GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20734	chr11	95937164	95937294	+	17.93839	NA	intron (NM_032427, intron 1 of 4)	LTR33|LTR|ERVL	-137373	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_22001	chr11	127498164	127498347	+	17.93839	NA	Intergenic	Intergenic	357290	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
19-PTNLD28-TUMOR_peak_104491	chr9	92451800	92451984	+	17.93839	NA	Intergenic	Intergenic	197194	NR_024280	100129066	Hs.125947	NR_024280		UNQ6494	-	uncharacterized LOC100129066	ncRNA
19-PTNLD28-TUMOR_peak_29235	chr13	115109482	115109720	+	17.93839	NA	Intergenic	LTR10C|LTR|ERV1	29636	NM_032436	283489	Hs.7542	NM_032436	HPRD:10707	CHAMP1	C13orf8|CAMP|CHAMP|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_98979	chr8	62475852	62476024	+	17.93839	NA	intron (NM_004318, intron 17 of 24)	intron (NM_004318, intron 17 of 24)	126470	NM_001164752	444	Hs.332422	NM_004318	HPRD:08996	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
19-PTNLD28-TUMOR_peak_33840	chr15	61091126	61091296	+	17.93839	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	117443	NR_120318	100996876	Hs.511626	NR_120318		LOC100996876	-	uncharacterized LOC100996876	ncRNA
19-PTNLD28-TUMOR_peak_75064	chr4	40992693	40992909	+	17.93839	NA	intron (NM_004307, intron 6 of 17)	intron (NM_004307, intron 6 of 17)	-133592	NM_001166053	323	Hs.479602	NM_004307	HPRD:04088	APBB2	FE65L|FE65L1	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_72327	chr3	171302989	171303151	+	17.93839	NA	Intergenic	Intergenic	-124873	NM_001161562	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_93908	chr7	91401804	91402034	+	17.93839	NA	Intergenic	Intergenic	108115	NM_001301135	7978	Hs.532216	NM_006980	HPRD:08373	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
19-PTNLD28-TUMOR_peak_8425	chr1	177907192	177907342	+	17.93839	NA	intron (NM_033127, intron 18 of 25)	MER49|LTR|ERV1	31783	NM_033127	89866	Hs.149540	NM_033127	HPRD:11491	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_21337	chr11	115398563	115398712	+	17.93839	NA	Intergenic	Intergenic	-23396	NM_001301043	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_45332	chr18	37421466	37421845	+	17.93839	NA	Intergenic	CpG	-89696	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	ncRNA
19-PTNLD28-TUMOR_peak_3705	chr1	55606338	55606507	+	17.93839	NA	intron (NM_015306, intron 24 of 67)	intron (NM_015306, intron 24 of 67)	74617	NM_015306	23358	Hs.477009	NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
19-PTNLD28-TUMOR_peak_36518	chr16	15915748	15915946	+	17.93839	NA	intron (NM_002474, intron 3 of 40)	intron (NM_002474, intron 3 of 40)	35040	NM_001040114	4629	Hs.460109	NM_002474	HPRD:01174	MYH11	AAT4|FAA4|SMHC|SMMHC	myosin, heavy chain 11, smooth muscle	protein-coding
19-PTNLD28-TUMOR_peak_76398	chr4	101502594	101502792	+	17.93839	NA	Intergenic	Intergenic	-63443	NM_001159694	51705	Hs.152913	NM_016242	HPRD:12220	EMCN	EMCN2|MUC14	endomucin	protein-coding
19-PTNLD28-TUMOR_peak_67523	chr3	37137882	37138114	+	17.93839	NA	intron (NM_017724, intron 5 of 13)	intron (NM_017724, intron 5 of 13)	78098	NM_006309	9209	Hs.740522	NM_006309	HPRD:10061	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_59422	chr20	1223296	1223476	+	17.93839	NA	exon (NM_001136566, exon 9 of 14)	exon (NM_001136566, exon 9 of 14)	16622	NM_001136566	642636	Hs.713451	NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21-like 1 (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_45231	chr18	33719340	33719492	+	17.93839	NA	exon (NM_001242875, exon 6 of 23)	exon (NM_001242875, exon 6 of 23)	9579	NR_040110	55250	Hs.8739	NM_018255	HPRD:15443	ELP2	SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_9037	chr1	196692585	196692768	+	17.93839	NA	intron (NM_000186, intron 11 of 21)	L1PA15-16|LINE|L1	-51254	NM_021023	10878	Hs.709217	NM_021023	HPRD:05626	CFHR3	CFHL3|DOWN16|FHR-3|FHR3|HLF4	complement factor H-related 3	protein-coding
19-PTNLD28-TUMOR_peak_25616	chr12	94302726	94302907	+	17.93839	NA	Intergenic	Intergenic	-171217	NR_110092	101928731	Hs.659971	NR_110092		LOC101928731	-	uncharacterized LOC101928731	ncRNA
19-PTNLD28-TUMOR_peak_79851	chr5	52702559	52702741	+	17.93839	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-73614	NM_006350	10468	Hs.9914	NM_006350	HPRD:00641	FST	FS	follistatin	protein-coding
19-PTNLD28-TUMOR_peak_81600	chr5	112586439	112586578	+	17.93839	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	44104	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_88852	chr6	97945740	97945885	+	17.93839	NA	intron (NR_110757, intron 1 of 4)	intron (NR_110757, intron 1 of 4)	-83529	NR_031679	100302287		NR_031679		MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
19-PTNLD28-TUMOR_peak_93858	chr7	89927561	89927716	+	17.93839	NA	intron (NM_001160138, intron 16 of 22)	intron (NM_001160138, intron 16 of 22)	-36899	NR_110085	101927446	Hs.734999	NR_110085	ENSG00000105793	LOC101927446	-	uncharacterized LOC101927446	ncRNA
19-PTNLD28-TUMOR_peak_8475	chr1	178694925	178695094	+	17.93550	NA	intron (NM_001286247, intron 1 of 18)	CpG	727	NM_152663	55103	Hs.632485	NM_018037	HPRD:15206	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
19-PTNLD28-TUMOR_peak_41453	chr17	39735831	39736142	+	17.93389	NA	Intergenic	Intergenic	7161	NM_000526	3861	Hs.654380	NM_000526	HPRD:01017	KRT14	CK14|EBS3|EBS4|K14|NFJ	keratin 14	protein-coding
19-PTNLD28-TUMOR_peak_19910	chr11	72896357	72896500	+	17.92797	NA	Intergenic	Intergenic	-32915	NM_176072	5029	Hs.339	NM_002564	HPRD:02499	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y, G-protein coupled, 2	protein-coding
19-PTNLD28-TUMOR_peak_96488	chr7	152468465	152468724	+	17.92797	NA	intron (NR_073000, intron 1 of 10)	L1M7|LINE|L1	11760	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_54644	chr2	105716683	105716825	+	17.92797	NA	TTS (NM_182640)	TTS (NM_182640)	2648	NR_110227	101927492	Hs.469537	NR_110227		LOC101927492	-	uncharacterized LOC101927492	ncRNA
19-PTNLD28-TUMOR_peak_9745	chr1	206644480	206644623	+	17.92356	NA	5' UTR (NM_014002, exon 2 of 22)	5' UTR (NM_014002, exon 2 of 22)	965	NM_001193322	9641	Hs.321045	NM_014002	HPRD:05442	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	protein-coding
19-PTNLD28-TUMOR_peak_99528	chr8	94928651	94929204	+	17.92060	NA	promoter-TSS (NR_039602)	promoter-TSS (NR_039602)	-156	NM_018444	54704	Hs.22265	NM_018444	HPRD:16185	PDP1	PDH|PDP|PDPC|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_40027	chr17	7792569	7792738	+	17.92060	NA	intron (NM_001005273, intron 1 of 39)	intron (NM_001005273, intron 1 of 39)	484	NM_001005273	1107	Hs.25601	NM_005852	HPRD:09071	CHD3	Mi-2a|Mi2-ALPHA|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_35194	chr15	90776565	90776894	+	17.92060	NA	promoter-TSS (NM_001013657)	promoter-TSS (NM_001013657)	550	NM_006384	10519	Hs.715556	NM_006384		CIB1	CIB|CIBP|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1 (calmyrin)	protein-coding
19-PTNLD28-TUMOR_peak_2689	chr1	40283053	40283280	+	17.91785	NA	Intergenic	Intergenic	-28633	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
19-PTNLD28-TUMOR_peak_6936	chr1	153285287	153285550	+	17.91237	NA	Intergenic	Intergenic	-2224	NM_052891	114771	Hs.348266	NM_052891	HPRD:16297	PGLYRP3	PGRP-Ialpha|PGRPIA	peptidoglycan recognition protein 3	protein-coding
19-PTNLD28-TUMOR_peak_73252	chr3	191991543	191991736	+	17.91237	NA	intron (NR_046596, intron 3 of 4)	LFSINE_Vert|SINE|SINE	35220	NR_046596	100873986	Hs.581652	NR_046596		FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_50313	chr19	55336881	55337141	+	17.91237	NA	intron (NM_013289, intron 6 of 8)	intron (NM_013289, intron 6 of 8)	-7120	NM_001281971	3809	Hs.654608	NM_012314	HPRD:05387	KIR2DS4	CD158I|KIR1D|KIR2DS1|KIR412|KKA3|NKAT-8|NKAT8	killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4	protein-coding
19-PTNLD28-TUMOR_peak_15375	chr10	104489071	104489262	+	17.91237	NA	intron (NM_178858, intron 5 of 11)	intron (NM_178858, intron 5 of 11)	-14561	NM_001083913	54838	Hs.500897	NM_017787	HPRD:12567	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_89410	chr6	127914372	127914931	+	17.91237	NA	Intergenic	L1PA2|LINE|L1	16332	NM_001010905	352999	Hs.226268	NM_001010905	HPRD:17379	C6orf58	-	chromosome 6 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_110049	chrX	154563856	154564149	+	17.91237	NA	promoter-TSS (NM_001289)	promoter-TSS (NM_001289)	-12	NM_001289	1193	Hs.655445	NM_001289	HPRD:02139	CLIC2	CLIC2b|MRXS32|XAP121	chloride intracellular channel 2	protein-coding
19-PTNLD28-TUMOR_peak_53230	chr2	67999425	67999677	+	17.91237	NA	Intergenic	MIR3|SINE|MIR	53143	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_95210	chr7	129275524	129275687	+	17.91237	NA	intron (NM_001040110, intron 1 of 10)	L3|LINE|CR1	5686	NM_001040110	4899	Hs.654363	NM_005011	HPRD:02930	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_59195	chr2	240511224	240511386	+	17.91237	NA	Intergenic	Intergenic	-173249	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_67615	chr3	39290984	39291199	+	17.91237	NA	Intergenic	Intergenic	30436	NM_001337	1524	Hs.78913	NM_001337	HPRD:03277	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	chemokine (C-X3-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_55109	chr2	114195808	114196079	+	17.91237	NA	intron (NM_172003, intron 1 of 14)	MIRc|SINE|MIR	675	NM_172003	150472	Hs.531330	NM_172003	HPRD:16687	CBWD2	-	COBW domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_42193	chr17	48136688	48136924	+	17.91187	NA	intron (NM_005501, intron 1 of 24)	intron (NM_005501, intron 1 of 24)	3466	NM_002204	3675	Hs.265829	NM_002204	HPRD:05431	ITGA3	CD49C|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_97904	chr8	28234775	28234911	+	17.90684	NA	intron (NM_018660, intron 1 of 9)	AluJr|SINE|Alu	9134	NM_018660	55893	Hs.435535	NM_018660	HPRD:11711	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
19-PTNLD28-TUMOR_peak_9181	chr1	201192100	201192260	+	17.90684	NA	intron (NM_001164586, intron 20 of 23)	intron (NM_001164586, intron 20 of 23)	32227	NM_001164586	91156	Hs.519024	NM_178275	HPRD:16812	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71482	chr3	144842735	144843418	+	17.90684	NA	Intergenic	Intergenic	1036206	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_21916	chr11	125822976	125823179	+	17.90684	NA	Intergenic	Intergenic	48816	NM_013264	29118	Hs.420263	NM_013264	HPRD:06367	DDX25	GRTH	DEAD (Asp-Glu-Ala-Asp) box helicase 25	protein-coding
19-PTNLD28-TUMOR_peak_87876	chr6	47696874	47696998	+	17.90684	NA	Intergenic	Intergenic	30647	NM_153838	221393	Hs.150131	NM_153838	HPRD:17057	GPR115	PGR18	G protein-coupled receptor 115	protein-coding
19-PTNLD28-TUMOR_peak_35714	chr16	1353396	1353691	+	17.90684	NA	Intergenic	Intergenic	-5611	NM_194260	7329	Hs.302903	NM_003345	HPRD:09045	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
19-PTNLD28-TUMOR_peak_105143	chr9	108456563	108457061	+	17.90262	NA	promoter-TSS (NM_018112)	promoter-TSS (NM_018112)	6	NM_018112	55151	Hs.411925	NM_018112	HPRD:15538	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
19-PTNLD28-TUMOR_peak_92231	chr7	43944820	43945185	+	17.90262	NA	intron (NM_001077664, intron 1 of 5)	intron (NM_001077664, intron 1 of 5)	1229	NM_001204871	100534592	Hs.663312	NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_2795	chr1	41414474	41414839	+	17.89902	NA	Intergenic	Intergenic	-30315	NR_125440	1503	Hs.473087	NM_001905	HPRD:00465	CTPS1	CTPS|IMD24	CTP synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_99789	chr8	102253473	102253812	+	17.89373	NA	Intergenic	Intergenic	-35350	NM_001267709	51123	Hs.374485	NM_016096	HPRD:13688	ZNF706	PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
19-PTNLD28-TUMOR_peak_18727	chr11	58694996	58695141	+	17.89373	NA	promoter-TSS (NM_001220494)	promoter-TSS (NM_001220494)	-34	NM_001220494	92292	Hs.38085	NM_080661	HPRD:14447	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_24432	chr12	53386898	53387152	+	17.89373	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-13017	NM_001417	1975	Hs.648394	NM_001417	HPRD:04892	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
19-PTNLD28-TUMOR_peak_30181	chr14	50406947	50407180	+	17.89345	NA	Intergenic	Intergenic	-26054	NR_106724	102464828		NR_106724		MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
19-PTNLD28-TUMOR_peak_97802	chr8	26891063	26891204	+	17.89345	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-168211	NM_033303	148	Hs.709175	NM_000680	HPRD:00081	ADRA1A	ADRA1C|ADRA1L1|ALPHA1AAR	adrenoceptor alpha 1A	protein-coding
19-PTNLD28-TUMOR_peak_37307	chr16	31019575	31019715	+	17.89345	NA	intron (NM_052874, intron 1 of 9)	intron (NM_052874, intron 1 of 9)	2184	NM_052874	112755	Hs.542230	NM_052874	HPRD:18126	STX1B	STX1B1|STX1B2	syntaxin 1B	protein-coding
19-PTNLD28-TUMOR_peak_87401	chr6	41220845	41221088	+	17.89345	NA	Intergenic	MIR3|SINE|MIR	3851	NR_002794	221438	Hs.639392	NR_002794		TREML5P	TLT5|TREML2P|TREML2P1	triggering receptor expressed on myeloid cells-like 5, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_40964	chr17	30462568	30462853	+	17.89345	NA	Intergenic	LTR13|LTR|ERVK	-6763	NM_001033568	55288	Hs.655325	NM_018307	HPRD:15247	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
19-PTNLD28-TUMOR_peak_109530	chrX	133931122	133931367	+	17.89345	NA	promoter-TSS (NM_001170757)	promoter-TSS (NM_001170757)	18	NM_001170757	159090	Hs.404706	NM_145284	HPRD:06614	FAM122B	SPACIA2	family with sequence similarity 122B	protein-coding
19-PTNLD28-TUMOR_peak_86926	chr6	34216194	34216419	+	17.89223	NA	intron (NM_001008703, intron 1 of 4)	intron (NM_001008703, intron 1 of 4)	579	NM_001008703	221491	Hs.381300	NM_178508	HPRD:12834	C6orf1	LBH	chromosome 6 open reading frame 1	protein-coding
19-PTNLD28-TUMOR_peak_75450	chr4	57922109	57922280	+	17.88670	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-53734	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97849	chr8	27547639	27547799	+	17.88670	NA	Intergenic	Intergenic	-11475	NR_037417	100500858		NR_037417		MIR3622A	-	microRNA 3622a	ncRNA
19-PTNLD28-TUMOR_peak_1588	chr1	25524524	25524755	+	17.88670	NA	Intergenic	Intergenic	34374	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA-splicing factor	protein-coding
19-PTNLD28-TUMOR_peak_41927	chr17	45144670	45144962	+	17.88670	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-24737	NM_001288811	51326	Hs.559259	NM_016632	HPRD:17424	ARL17A	ARF1P2|ARL17P1	ADP-ribosylation factor-like 17A	protein-coding
19-PTNLD28-TUMOR_peak_62634	chr20	62580463	62580659	+	17.88547	NA	intron (NM_017859, intron 1 of 14)	intron (NM_017859, intron 1 of 14)	1966	NM_001193379	54963	Hs.504998	NM_017859	HPRD:15607	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_63119	chr21	32593020	32593262	+	17.87667	NA	intron (NM_003253, intron 9 of 28)	intron (NM_003253, intron 9 of 28)	-182346	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_61584	chr20	46845641	46845805	+	17.87605	NA	Intergenic	AluY|SINE|Alu	-142931	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_35986	chr16	4366912	4367273	+	17.87605	NA	Intergenic	Intergenic	11249	NR_110901	101926896	Hs.670300	NR_110901		LOC101926896	-	uncharacterized LOC101926896	ncRNA
19-PTNLD28-TUMOR_peak_104888	chr9	100570005	100570352	+	17.87605	NA	Intergenic	L2c|LINE|L2	-45359	NM_004473	2304	Hs.159234	NM_004473	HPRD:04014	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
19-PTNLD28-TUMOR_peak_82162	chr5	132628111	132628285	+	17.87278	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	135200	NR_031621	100302134		NR_031621		MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
19-PTNLD28-TUMOR_peak_32910	chr15	32584903	32585085	+	17.87278	NA	Intergenic	L1PA3|LINE|L1	110499	NM_001282493	653125		NM_001282493		GOLGA8K	-	golgin A8 family, member K	protein-coding
19-PTNLD28-TUMOR_peak_61869	chr20	49440703	49441003	+	17.87278	NA	intron (NM_017843, intron 2 of 5)	intron (NM_017843, intron 2 of 5)	29422	NM_001010974	55653	Hs.381178	NM_017843	HPRD:06314	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
19-PTNLD28-TUMOR_peak_24044	chr12	48343364	48343535	+	17.87278	NA	Intergenic	Intergenic	-13881	NM_001143842	79022	Hs.596726	NM_024056	HPRD:14690	TMEM106C	-	transmembrane protein 106C	protein-coding
19-PTNLD28-TUMOR_peak_66183	chr3	1995275	1995515	+	17.87278	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-145155	NM_175607	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_98889	chr8	57824476	57824694	+	17.86967	NA	Intergenic	Intergenic	81845	NM_017813	54928	Hs.438689	NM_017813	HPRD:06531	IMPAD1	GPAPP|IMP 3|IMP-3|IMPA3	inositol monophosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96996	chr8	7846314	7846616	+	17.86967	NA	intron (NR_027424, intron 6 of 6)	L1PBa|LINE|L1	8578	NR_003668	641517	Hs.616079	NM_001037380	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	defensin, beta 109, pseudogene 1B	pseudo
19-PTNLD28-TUMOR_peak_57202	chr2	178770900	178771133	+	17.86967	NA	intron (NM_001077197, intron 3 of 20)	intron (NM_001077197, intron 3 of 20)	16548	NM_001077358	50940	Hs.570273	NM_016953	HPRD:05391	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
19-PTNLD28-TUMOR_peak_81793	chr5	121956363	121956707	+	17.86967	NA	Intergenic	HERVH-int|LTR|ERV1	109720	NR_109881	101927379	Hs.536399	NR_109881	ENSG00000251538	LOC101927379	-	uncharacterized LOC101927379	ncRNA
19-PTNLD28-TUMOR_peak_65106	chr22	31159933	31160064	+	17.86967	NA	promoter-TSS (NM_001282740)	promoter-TSS (NM_001282740)	-242	NM_001282740	23762	Hs.517546	NM_030758	HPRD:09471	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_68319	chr3	52157208	52157407	+	17.86967	NA	intron (NM_015426, intron 8 of 10)	intron (NM_015426, intron 8 of 10)	31399	NM_001161581	25886	Hs.476306	NM_015426	HPRD:08523	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
19-PTNLD28-TUMOR_peak_4722	chr1	88646337	88646532	+	17.86967	NA	Intergenic	Intergenic	-503488	NM_006256	5586	Hs.440833	NM_006256	HPRD:03972	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
19-PTNLD28-TUMOR_peak_60795	chr20	35093938	35094122	+	17.86774	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	3844	NM_183006	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_4892	chr1	93425332	93425745	+	17.86451	NA	intron (NM_001252273, intron 1 of 4)	AluSx1|SINE|Alu	1541	NM_001252269	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_39613	chr17	1363653	1363845	+	17.86268	NA	Intergenic	Intergenic	-4188	NM_005206	1398	Hs.461896	NM_005206	HPRD:01267	CRK	CRKII|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_43759	chr17	76397374	76397665	+	17.86268	NA	intron (NR_111989, intron 5 of 8)	intron (NR_111989, intron 5 of 8)	22820	NM_024419	9489	Hs.654671	NM_024419	HPRD:17841	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_96931	chr8	6720422	6720668	+	17.86268	NA	Intergenic	Intergenic	14984	NM_005218	1672	Hs.32949	NM_005218	HPRD:03634	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_68245	chr3	50642526	50642780	+	17.85835	NA	Intergenic	Intergenic	6609	NM_013324	1154	Hs.655334	NM_013324	HPRD:03897	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2-containing protein	protein-coding
19-PTNLD28-TUMOR_peak_13383	chr10	47162194	47162511	+	17.85255	NA	intron (NM_001271702, intron 9 of 11).2	intron (NM_001271702, intron 9 of 11).2	-10952	NR_033957	643650	Hs.744313	NR_033957	ENSG00000223477	LINC00842	-	long intergenic non-protein coding RNA 842	ncRNA
19-PTNLD28-TUMOR_peak_42636	chr17	57439683	57439867	+	17.85255	NA	intron (NM_001005404, intron 2 of 4)	L4|LINE|RTE	-3669	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	ncRNA
19-PTNLD28-TUMOR_peak_5607	chr1	113265208	113265549	+	17.85255	NA	intron (NM_001004440, intron 2 of 4)	intron (NM_001004440, intron 2 of 4)	2189	NM_001004440	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_103645	chr9	70950861	70951122	+	17.85166	NA	Intergenic	Intergenic	-20824	NM_021965	5239	Hs.307835	NM_021965	HPRD:02990	PGM5	PGMRP	phosphoglucomutase 5	protein-coding
19-PTNLD28-TUMOR_peak_21518	chr11	118661705	118662023	+	17.85166	NA	promoter-TSS (NM_001257191)	promoter-TSS (NM_001257191)	108	NM_004397	1656	Hs.408461	NM_004397		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
19-PTNLD28-TUMOR_peak_65807	chr22	43538696	43539007	+	17.84675	NA	intron (NM_173467, intron 1 of 3)	intron (NM_173467, intron 1 of 3)	552	NM_173467	27349	Hs.349111	NM_014507	HPRD:14786	MCAT	FASN2C|MCT|MT|NET62|fabD	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_20908	chr11	103721247	103721377	+	17.84675	NA	TTS (NR_039842)	TTS (NR_039842)	678	NR_039842	100616457		NR_039842	miRBase:MI0017326	MIR4693	-	microRNA 4693	ncRNA
19-PTNLD28-TUMOR_peak_34920	chr15	83974128	83974412	+	17.83926	NA	Intergenic	Intergenic	-20802	NM_001717	646	Hs.459153	NM_001717	HPRD:11799	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
19-PTNLD28-TUMOR_peak_80597	chr5	72144623	72144829	+	17.83926	NA	intron (NM_153188, intron 2 of 24)	CpG-20775	796	NM_153188	3842	Hs.482497	NM_002270	HPRD:04210	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
19-PTNLD28-TUMOR_peak_67598	chr3	39167413	39167628	+	17.83926	NA	intron (NM_001105513, intron 10 of 27)	L2c|LINE|L2	-12177	NR_106880	102466743		NR_106880		MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
19-PTNLD28-TUMOR_peak_87306	chr6	39277772	39277950	+	17.83926	NA	intron (NM_031460, intron 2 of 4)	intron (NM_031460, intron 2 of 4)	4375	NM_031460	89822	Hs.162282	NM_031460	HPRD:09566	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium channel, subfamily K, member 17	protein-coding
19-PTNLD28-TUMOR_peak_86046	chr6	25360943	25361155	+	17.83257	NA	intron (NM_017640, intron 2 of 36)	intron (NM_017640, intron 2 of 36)	81393	NM_001173977	55604	Hs.649550	NM_017640	HPRD:11285	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
19-PTNLD28-TUMOR_peak_104160	chr9	85834581	85834821	+	17.83257	NA	Intergenic	Intergenic	47501	NM_001244962	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_74133	chr4	5902575	5902905	+	17.83119	NA	Intergenic	Intergenic	-7930	NM_001014809	1400	Hs.135270	NM_001313	HPRD:03913	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68011	chr3	48089708	48089882	+	17.83119	NA	intron (NM_002375, intron 1 of 18)	intron (NM_002375, intron 1 of 18)	40974	NM_030885	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_39011	chr16	82044866	82045163	+	17.83119	NA	promoter-TSS (NM_145168)	promoter-TSS (NM_145168)	79	NM_145168	93517	Hs.87779	NM_145168	HPRD:17118	SDR42E1	-	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
19-PTNLD28-TUMOR_peak_21655	chr11	120435712	120435952	+	17.83119	NA	intron (NM_001282470, intron 1 of 19)	CpG	637	NM_001282473	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_51767	chr2	27876388	27876525	+	17.83119	NA	exon (NM_001282731, exon 6 of 6)	exon (NM_001282731, exon 6 of 6)	-9882	NM_018158	22950	Hs.306000	NM_018158	HPRD:04038	SLC4A1AP	-	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_40258	chr17	13542554	13542793	+	17.83119	NA	Intergenic	MER41B|LTR|ERV1	-37429	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_10837	chr1	231543687	231544038	+	17.83119	NA	intron (NM_022051, intron 1 of 4)	intron (NM_022051, intron 1 of 4)	16928	NM_022051	54583	Hs.444450	NM_022051	HPRD:06971	EGLN1	C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia-inducible factor 1	protein-coding
19-PTNLD28-TUMOR_peak_95923	chr7	141830303	141830458	+	17.83119	NA	intron (NM_001293626, intron 3 of 47)	L2c|LINE|L2	18831	NM_001293626	93432	Hs.647098	NM_001008748	ENSG00000257743	LOC93432	-	maltase-glucoamylase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_46241	chr18	71852211	71852461	+	17.83119	NA	Intergenic	Intergenic	36590	NM_014177	29090	Hs.532835	NM_014177	HPRD:13706	TIMM21	C18orf55|TIM21	translocase of inner mitochondrial membrane 21 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_12875	chr10	33942608	33942751	+	17.83119	NA	Intergenic	L1MB4|LINE|L1	118929	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_71967	chr3	157290426	157290617	+	17.83119	NA	intron (NM_001130002, intron 4 of 4)	intron (NM_001130002, intron 4 of 4)	29388	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_80416	chr5	67977114	67977278	+	17.82946	NA	Intergenic	Intergenic	388800	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_65888	chr22	45135595	45135861	+	17.82792	NA	intron (NM_181334, intron 4 of 14)	AluSx|SINE|Alu	-12710	NM_181335	23779	Hs.102336	NM_181335	HPRD:06448	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
19-PTNLD28-TUMOR_peak_4736	chr1	89239326	89239521	+	17.82792	NA	intron (NM_006256, intron 6 of 21)	FRAM|SINE|Alu	-88536	NR_110682	101927891	Hs.637231	NR_110682	ENSG00000237505	PKN2-AS1	-	PKN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40768	chr17	26674348	26674555	+	17.82792	NA	TTS (NM_021137)	TTS (NM_021137)	10161	NM_001290145	26073	Hs.241543	NM_015584	HPRD:17874	POLDIP2	PDIP38|POLD4|p38	polymerase (DNA-directed), delta interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86928	chr6	34287324	34287656	+	17.82792	NA	intron (NM_001202470, intron 6 of 8)	MER21A|LTR|ERVL	-70605	NM_001287398	221491	Hs.381300	NM_178508	HPRD:12834	C6orf1	LBH	chromosome 6 open reading frame 1	protein-coding
19-PTNLD28-TUMOR_peak_16965	chr11	8364700	8365238	+	17.82792	NA	Intergenic	Intergenic	-74787	NM_001270428	4004	Hs.654426	NM_002315	HPRD:01738	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
19-PTNLD28-TUMOR_peak_51233	chr2	13024913	13025445	+	17.82792	NA	Intergenic	Intergenic	121959	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
19-PTNLD28-TUMOR_peak_95254	chr7	129775607	129775883	+	17.82792	NA	TTS (NM_014997)	TTS (NM_014997)	65396	NM_014997	23008	Hs.520710	NM_014997	HPRD:17182	KLHDC10	slim	kelch domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_59350	chr2	243017441	243017640	+	17.82792	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	-13304	NR_024437	728323	Hs.471887	NR_024437		LOC728323	-	uncharacterized LOC728323	ncRNA
19-PTNLD28-TUMOR_peak_70109	chr3	121151055	121151244	+	17.82792	NA	3' UTR (NM_199420, exon 30 of 30)	3' UTR (NM_199420, exon 30 of 30)	113704	NM_199420	10721	Hs.241517	NM_199420	HPRD:10375	POLQ	POLH|PRO0327	polymerase (DNA directed), theta	protein-coding
19-PTNLD28-TUMOR_peak_69760	chr3	111686583	111686817	+	17.82792	NA	intron (NM_001134437, intron 15 of 17)	intron (NM_001134437, intron 15 of 17)	-11023	NM_018394	55347	Hs.477115	NM_018394	HPRD:07751	ABHD10	-	abhydrolase domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_4859	chr1	92196949	92197257	+	17.82647	NA	intron (NM_001195684, intron 6 of 17)	intron (NM_001195684, intron 6 of 17)	154733	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_62029	chr20	52060987	52061163	+	17.82647	NA	intron (NM_173485, intron 2 of 2)	intron (NM_173485, intron 2 of 2)	-108234	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_72954	chr3	186501801	186502225	+	17.82416	NA	promoter-TSS (NR_002587)	promoter-TSS (NR_002587)	-572	NR_002587	619567		NR_002587		SNORD2	R39B|SNR39B	small nucleolar RNA, C/D box 2	snoRNA
19-PTNLD28-TUMOR_peak_71091	chr3	136491642	136491827	+	17.82077	NA	Intergenic	LTR16A|LTR|ERVL	-20489	NM_005862	10274	Hs.412586	NM_005862	HPRD:05076	STAG1	SA1|SCC3A	stromal antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_101421	chr8	141807105	141807273	+	17.82077	NA	intron (NM_153831, intron 12 of 31)	intron (NM_153831, intron 12 of 31)	-161543	NM_001164623	27161	Hs.743313	NM_012154	HPRD:06943	AGO2	EIF2C2|Q10	argonaute RISC catalytic component 2	protein-coding
19-PTNLD28-TUMOR_peak_79882	chr5	53953931	53954185	+	17.82077	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	45094	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_43088	chr17	65959195	65959640	+	17.82077	NA	intron (NM_182641, intron 24 of 27)	intron (NM_182641, intron 24 of 27)	30348	NM_181655	284018	Hs.90790	NM_181655	HPRD:14151	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_90215	chr6	157556798	157557334	+	17.82077	NA	Intergenic	CpG	188225	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_89101	chr6	111273537	111273867	+	17.82077	NA	Intergenic	LTR44|LTR|ERV1	-6061	NM_138408	112495	Hs.418520	NM_138408	HPRD:12886	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC, polypeptide 6, alpha 35kDa	protein-coding
19-PTNLD28-TUMOR_peak_58658	chr2	226895852	226896233	+	17.82077	NA	Intergenic	Intergenic	-111468	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
19-PTNLD28-TUMOR_peak_49727	chr19	49130438	49130623	+	17.82077	NA	intron (NM_001204160, intron 2 of 5)	intron (NM_001204160, intron 2 of 5)	2321	NM_001204160	56848	Hs.528006	NM_020126	HPRD:06157	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_94122	chr7	97715603	97715917	+	17.82077	NA	Intergenic	Intergenic	-20437	NM_014916	22853	Hs.444179	NM_014916	HPRD:13994	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk	lemur tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_84783	chr6	2382260	2382750	+	17.82077	NA	intron (NR_046229, intron 4 of 6)	intron (NR_046229, intron 4 of 6)	136518	NR_046229	100508120	Hs.188825	NR_046229		GMDS-AS1	-	GMDS antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_32866	chr15	31528743	31529012	+	17.81813	NA	Intergenic	Intergenic	-5827	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
19-PTNLD28-TUMOR_peak_35747	chr16	1973652	1973865	+	17.81813	NA	Intergenic	Intergenic	-5527	NM_001009606	64711	Hs.670144	NM_001009606	HPRD:17115	HS3ST6	HS3ST5	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_65541	chr22	39319907	39320164	+	17.81813	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-33492	NM_145699	200315	Hs.226307	NM_145699	HPRD:06168	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A	protein-coding
19-PTNLD28-TUMOR_peak_97163	chr8	11332119	11332348	+	17.81813	NA	Intergenic	Intergenic	-7957	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_63411	chr21	37693001	37693147	+	17.81438	NA	intron (NM_015358, intron 1 of 16)	intron (NM_015358, intron 1 of 16)	587	NM_015358	23515	Hs.421150	NM_015358	HPRD:10316	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_73634	chr3	197025847	197026008	+	17.81438	NA	promoter-TSS (NM_004087)	promoter-TSS (NM_004087)	216	NM_001290983	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_93374	chr7	74653978	74654224	+	17.80599	NA	promoter-TSS (NR_003580).2	promoter-TSS (NR_003580).2	-642	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90532	chr6	167681096	167681261	+	17.80557	NA	Intergenic	Intergenic	-23625	NM_001143947	54346	Hs.567508	NM_018974	HPRD:12148	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_71183	chr3	138543141	138543400	+	17.80108	NA	Intergenic	Intergenic	-65069	NM_006219	5291	Hs.239818	NM_006219		PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_66917	chr3	15671778	15671922	+	17.80108	NA	intron (NM_001281724, intron 2 of 5)	intron (NM_001281724, intron 2 of 5)	28374	NM_001281725	686	Hs.517830	NM_000060	HPRD:08359	BTD	-	biotinidase	protein-coding
19-PTNLD28-TUMOR_peak_21469	chr11	117945622	117945773	+	17.80108	NA	intron (NR_038318, intron 1 of 3)	intron (NR_038318, intron 1 of 3)	-2030	NM_019894	56649	Hs.161985	NM_019894		TMPRSS4	CAPH2|MT-SP2|TMPRSS3	transmembrane protease, serine 4	protein-coding
19-PTNLD28-TUMOR_peak_31999	chr14	99991234	99991447	+	17.80108	NA	intron (NM_001144995, intron 2 of 5)	intron (NM_001144995, intron 2 of 5)	43601	NM_001099402	8812	Hs.510409	NM_003858		CCNK	CPR4	cyclin K	protein-coding
19-PTNLD28-TUMOR_peak_10364	chr1	224370170	224370452	+	17.79371	NA	promoter-TSS (NM_003676)	promoter-TSS (NM_003676)	-599	NM_003676	8560	Hs.299878	NM_003676	HPRD:13133	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|MLD	delta(4)-desaturase, sphingolipid 1	protein-coding
19-PTNLD28-TUMOR_peak_106285	chr9	131320949	131321121	+	17.79234	NA	intron (NM_001195532, intron 1 of 54)	intron (NM_001195532, intron 1 of 54)	6198	NM_003127	6709	Hs.372331	NM_003127	HPRD:01684	SPTAN1	EIEE5|NEAS|SPTA2	spectrin, alpha, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_32630	chr15	25789237	25789465	+	17.78986	NA	Intergenic	Intergenic	-105176	NM_130839	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_55137	chr2	114588806	114589093	+	17.78986	NA	non-coding (NR_110174, exon 5 of 5)	non-coding (NR_110174, exon 5 of 5)	-58562	NR_102318	10096	Hs.433512	NM_005721	HPRD:05024	ACTR3	ARP3	ARP3 actin-related protein 3 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_95894	chr7	141362926	141363348	+	17.78910	NA	intron (NM_001080392, intron 8 of 8)	intron (NM_001080392, intron 8 of 8)	38816	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
19-PTNLD28-TUMOR_peak_42774	chr17	60706885	60707290	+	17.78871	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	2325	NM_006039	9902	Hs.7835	NM_006039	HPRD:10094	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor, C type 2	protein-coding
19-PTNLD28-TUMOR_peak_18306	chr11	45130015	45130161	+	17.78731	NA	intron (NR_046338, intron 2 of 7)	intron (NR_046338, intron 2 of 7)	14524	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_10726	chr1	229389059	229389300	+	17.78731	NA	Intergenic	L2a|LINE|L2	-17630	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_54941	chr2	112072901	112073041	+	17.78731	NA	Intergenic	Intergenic	5692	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_24555	chr12	54700928	54701171	+	17.78731	NA	Intergenic	Intergenic	-6228	NM_001261461	4778	Hs.75643	NM_006163	HPRD:09030	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
19-PTNLD28-TUMOR_peak_35900	chr16	3115200	3115421	+	17.78731	NA	promoter-TSS (NM_001012631)	promoter-TSS (NM_001012631)	-3	NM_004221	9235	Hs.943	NM_004221	HPRD:09346	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
19-PTNLD28-TUMOR_peak_33478	chr15	48009510	48009718	+	17.78731	NA	intron (NM_001198999, intron 4 of 19)	CpG	-1072	NM_153617	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_89129	chr6	112127843	112128082	+	17.78731	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-47628	NM_153048	2534	Hs.390567	NM_002037	HPRD:00655	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_46317	chr18	74398799	74399091	+	17.78731	NA	Intergenic	Intergenic	-3041	NR_122073	400661	Hs.514963	NR_122073		LOC400661	-	uncharacterized LOC400661	ncRNA
19-PTNLD28-TUMOR_peak_15482	chr10	106034566	106034983	+	17.77878	NA	promoter-TSS (NM_001191014)	promoter-TSS (NM_001191014)	-113	NM_001191014	119391	Hs.107384	NM_183239	HPRD:13614	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
19-PTNLD28-TUMOR_peak_82953	chr5	145345512	145345676	+	17.77878	NA	intron (NM_152550, intron 2 of 9)	L2b|LINE|L2	29468	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_108865	chrX	84258718	84258913	+	17.77878	NA	promoter-TSS (NM_198450)	promoter-TSS (NM_198450)	-83	NM_198450	139322	Hs.512181	NM_198450		APOOL	CXorf33|FAM121A|UNQ8193	apolipoprotein O-like	protein-coding
19-PTNLD28-TUMOR_peak_90491	chr6	166956160	166956312	+	17.77878	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-33315	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	ncRNA
19-PTNLD28-TUMOR_peak_44986	chr18	23770603	23770861	+	17.77878	NA	intron (NM_001025097, intron 6 of 6)	intron (NM_001025097, intron 6 of 6)	-36115	NR_121653	6875	Hs.369519	NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_88577	chr6	85176358	85176578	+	17.77878	NA	Intergenic	Intergenic	-239115	NM_014895	22832	Hs.485865	NM_014895	HPRD:10796	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162kDa	protein-coding
19-PTNLD28-TUMOR_peak_10079	chr1	218633359	218633543	+	17.77878	NA	Intergenic	Intergenic	17483	NR_125715	103611157	Hs.133379	NR_125715		TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_104492	chr9	92457320	92457523	+	17.77878	NA	Intergenic	L1ME2z|LINE|L1	202723	NR_024280	100129066	Hs.125947	NR_024280		UNQ6494	-	uncharacterized LOC100129066	ncRNA
19-PTNLD28-TUMOR_peak_60926	chr20	36678315	36678735	+	17.77878	NA	intron (NM_021215, intron 3 of 6)	L2c|LINE|L2	16577	NM_021215	58490	Hs.278839	NM_021215	HPRD:08513	RPRD1B	C20orf77|CREPT|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_3431	chr1	50513643	50513989	+	17.77878	NA	5' UTR (NM_001144777, exon 1 of 7)	5' UTR (NM_001144777, exon 1 of 7)	130	NM_001144777	1996	Hs.213050	NM_021952	HPRD:01343	ELAVL4	HUD|PNEM	ELAV like neuron-specific RNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_77941	chr4	166361787	166362023	+	17.77878	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	54511	NR_030304	693163		NR_030304		MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
19-PTNLD28-TUMOR_peak_8421	chr1	177749322	177749479	+	17.77878	NA	Intergenic	Intergenic	79741	NR_110722	101928778	Hs.573792	NR_110722	ENSG00000236720	LOC101928778	-	uncharacterized LOC101928778	ncRNA
19-PTNLD28-TUMOR_peak_44299	chr18	2961938	2962217	+	17.77878	NA	intron (NM_014646, intron 1 of 19)	L4|LINE|RTE	-15456	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine-rich domain (CHORD) containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31625	chr14	90239999	90240189	+	17.77878	NA	Intergenic	MLT2F|LTR|ERVL	-154600	NM_001085471	1112	Hs.434286	NM_005197	HPRD:07533	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19-PTNLD28-TUMOR_peak_89717	chr6	140783942	140784399	+	17.77878	NA	Intergenic	Intergenic	-220781	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_60123	chr20	20840961	20841144	+	17.77878	NA	Intergenic	Intergenic	-147786	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_57403	chr2	189163853	189163987	+	17.77878	NA	intron (NR_045563, intron 2 of 12)	LTR10A|LTR|ERV1	1701	NR_030287	693146		NR_030287	miRBase:MI0003567	MIR561	MIRN561|hsa-mir-561	microRNA 561	ncRNA
19-PTNLD28-TUMOR_peak_51935	chr2	30401727	30401846	+	17.77878	NA	Intergenic	Intergenic	32036	NM_016061	51646	Hs.515890	NM_016061	HPRD:18312	YPEL5	-	yippee-like 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_9416	chr1	203275648	203275891	+	17.77632	NA	intron (NM_006763, intron 1 of 1)	intron (NM_006763, intron 1 of 1)	1105	NM_006763	7832	Hs.519162	NM_006763	HPRD:03357	BTG2	PC3|TIS21	BTG family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_16294	chr10	131988453	131989029	+	17.76301	NA	Intergenic	CpG	54102	NM_001199868	10539	Hs.42644	NM_006541	HPRD:10153	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
19-PTNLD28-TUMOR_peak_72977	chr3	186701541	186701705	+	17.76250	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-38042	NM_003032	6480	Hs.207459	NM_003032	HPRD:00184	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	protein-coding
19-PTNLD28-TUMOR_peak_41814	chr17	43442014	43442278	+	17.76250	NA	Intergenic	Intergenic	-47716	NM_003954	9020	Hs.404183	NM_003954		MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_5825	chr1	117122008	117122170	+	17.76250	NA	exon (NM_001542, exon 10 of 11)	exon (NM_001542, exon 10 of 11)	-8374	NM_001144822	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_10775	chr1	230289651	230289872	+	17.76250	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	86819	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_71310	chr3	140730406	140730692	+	17.76250	NA	Intergenic	MER20B|DNA|hAT-Charlie	-40194	NM_080862	92369	Hs.655112	NM_080862	HPRD:18108	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_63214	chr21	34258579	34258944	+	17.75089	NA	Intergenic	LTR43B|LTR|ERV1	-72708	NM_019596	56245	Hs.517235	NM_019596		C21orf62	B37|C21orf120|PRED81	chromosome 21 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_19884	chr11	72395709	72395843	+	17.75089	NA	TTS (NM_001040118)	TTS (NM_001040118)	-10279	NM_002599	5138	Hs.503163	NM_002599	HPRD:04041	PDE2A	CGS-PDE|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding
19-PTNLD28-TUMOR_peak_41251	chr17	36823841	36824022	+	17.75089	NA	Intergenic	Intergenic	7256	NM_001130677	100170841	Hs.445574	NM_001130677	ENSG00000179294	C17orf96	PRR28	chromosome 17 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_85726	chr6	17971789	17971986	+	17.75089	NA	intron (NM_001243423, intron 2 of 2)	AluJb|SINE|Alu	15967	NM_001105568	63971	Hs.94499	NM_022113	HPRD:09256	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
19-PTNLD28-TUMOR_peak_22468	chr12	2289533	2289702	+	17.75089	NA	intron (NM_001129832, intron 3 of 47)	intron (NM_001129832, intron 3 of 47)	43030	NR_046578	100874234	Hs.372570	NR_046578	ENSG00000256025	CACNA1C-AS4	-	CACNA1C antisense RNA 4	ncRNA
19-PTNLD28-TUMOR_peak_82976	chr5	145921880	145922085	+	17.75089	NA	Intergenic	Intergenic	-26306	NM_194251	134391	Hs.483732	NM_194251		GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
19-PTNLD28-TUMOR_peak_47137	chr19	9707704	9707965	+	17.74866	NA	Intergenic	LTR10F|LTR|ERV1	-12625	NM_001008727	7675	Hs.501537	NM_001008727	HPRD:15952	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
19-PTNLD28-TUMOR_peak_34348	chr15	71739590	71739897	+	17.74866	NA	intron (NM_024817, intron 6 of 16)	AluSc|SINE|Alu	-99798	NM_001286429	79875	Hs.387057	NM_024817	HPRD:07835	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_51128	chr2	11190752	11190929	+	17.74866	NA	Intergenic	Intergenic	81462	NR_040080	285150	Hs.329841	NM_182586	HPRD:08158	FLJ33534	-	uncharacterized LOC285150	ncRNA
19-PTNLD28-TUMOR_peak_28539	chr13	77554312	77554474	+	17.74866	NA	Intergenic	CpG	-11666	NM_006493	1203	Hs.30213	NM_006493		CLN5	NCL	ceroid-lipofuscinosis, neuronal 5	protein-coding
19-PTNLD28-TUMOR_peak_49382	chr19	45901512	45901755	+	17.74866	NA	intron (NM_001142502, intron 1 of 12)	CpG-13933	6679	NM_006663	10848	Hs.466937	NM_006663	HPRD:09195	PPP1R13L	IASPP|NKIP1|RAI|RAI4	protein phosphatase 1, regulatory subunit 13 like	protein-coding
19-PTNLD28-TUMOR_peak_51154	chr2	11788390	11788748	+	17.74866	NA	Intergenic	Intergenic	21760	NM_012344	23620	Hs.131138	NM_012344	HPRD:05704	NTSR2	NTR2	neurotensin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_100369	chr8	120875446	120875624	+	17.74866	NA	Intergenic	Intergenic	-7365	NM_024094	79075	Hs.315167	NM_024094	HPRD:13123	DSCC1	DCC1	DNA replication and sister chromatid cohesion 1	protein-coding
19-PTNLD28-TUMOR_peak_90679	chr6	170787783	170787960	+	17.74866	NA	Intergenic	CpG	74546	NM_002793	5689	Hs.352768	NM_002793	HPRD:03603	PSMB1	HC5|PMSB1|PSC5	proteasome (prosome, macropain) subunit, beta type, 1	protein-coding
19-PTNLD28-TUMOR_peak_39906	chr17	6426777	6426901	+	17.74866	NA	intron (NM_001165966, intron 2 of 18)	intron (NM_001165966, intron 2 of 18)	33038	NM_001165966	83394	Hs.183983	NM_031220	HPRD:07498	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
19-PTNLD28-TUMOR_peak_100307	chr8	119809019	119809258	+	17.74866	NA	Intergenic	Intergenic	155245	NM_002546	4982	Hs.81791	NM_002546	HPRD:04032	TNFRSF11B	OCIF|OPG|TR1	tumor necrosis factor receptor superfamily, member 11b	protein-coding
19-PTNLD28-TUMOR_peak_52326	chr2	42155868	42156042	+	17.74866	NA	Intergenic	Intergenic	4908	NR_110263	101929723	Hs.369330	NR_110262		LOC101929723	-	uncharacterized LOC101929723	ncRNA
19-PTNLD28-TUMOR_peak_70943	chr3	133614390	133614827	+	17.74822	NA	promoter-TSS (NM_016577)	promoter-TSS (NM_016577)	83	NM_016577	51560	Hs.715344	NM_016577	HPRD:11474	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_60480	chr20	30791789	30792299	+	17.74721	NA	intron (NM_002657, intron 1 of 2)	intron (NM_002657, intron 1 of 2)	3502	NM_002657	5326	Hs.154104	NM_002657	HPRD:05333	PLAGL2	ZNF900	pleiomorphic adenoma gene-like 2	protein-coding
19-PTNLD28-TUMOR_peak_17212	chr11	12147461	12147606	+	17.74622	NA	intron (NM_001282668, intron 1 of 4)	intron (NM_001282668, intron 1 of 4)	-12404	NM_001282665	9645	Hs.501928	NM_014632	HPRD:10085	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_50685	chr1_gl000192_random	476652	476777	+	17.74607	NA	Intergenic	Intergenic	-8031	NR_120328	102724558	Hs.712738	NR_120328		LOC102724558	-	uncharacterized LOC102724558	ncRNA
19-PTNLD28-TUMOR_peak_101763	chr8	145649105	145649297	+	17.72858	NA	exon (NM_016208, exon 10 of 10)	exon (NM_016208, exon 10 of 10)	4745	NM_183057	51160	Hs.418175	NM_016208	HPRD:11675	VPS28	-	vacuolar protein sorting 28 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_3002	chr1	43880414	43880535	+	17.72779	NA	intron (NM_015284, intron 4 of 70)	intron (NM_015284, intron 4 of 70)	24918	NM_015284	23334	Hs.643560	NM_015284	HPRD:11085	SZT2	C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B	seizure threshold 2 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_36664	chr16	19890616	19890756	+	17.72779	NA	intron (NM_016235, intron 1 of 3)	intron (NM_016235, intron 1 of 3)	5465	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_101536	chr8	143534050	143534398	+	17.72779	NA	Intergenic	CpG	-11153	NM_001702	575	Hs.194654	NM_001702	HPRD:04062	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_42169	chr17	47979251	47979569	+	17.72779	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-54031	NM_001077504	255061	Hs.652130	NM_170685	HPRD:09701	TAC4	EK|HK-1|HK1|PPT-C	tachykinin 4 (hemokinin)	protein-coding
19-PTNLD28-TUMOR_peak_32854	chr15	31391290	31391435	+	17.72779	NA	intron (NM_001252024, intron 1 of 27)	intron (NM_001252024, intron 1 of 27)	2567	NM_001252030	4308	Hs.155942	NM_002420	HPRD:04656	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_106856	chr9	140348472	140348701	+	17.72779	NA	intron (NM_015537, intron 6 of 14)	(CGGGG)n|Simple_repeat|Simple_repeat	-4048	NR_106964	102466223		NR_106964		MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
19-PTNLD28-TUMOR_peak_87305	chr6	39271005	39271180	+	17.72779	NA	intron (NM_001135111, intron 4 of 5)	intron (NM_001135111, intron 4 of 5)	11144	NM_031460	89822	Hs.162282	NM_031460	HPRD:09566	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium channel, subfamily K, member 17	protein-coding
19-PTNLD28-TUMOR_peak_46508	chr19	743306	743794	+	17.72779	NA	intron (NM_002579, intron 8 of 8)	intron (NM_002579, intron 8 of 8)	-7596	NM_173481	126353	Hs.439180	NM_173481	HPRD:12695	MISP	C19orf21	mitotic spindle positioning	protein-coding
19-PTNLD28-TUMOR_peak_17189	chr11	11988095	11988276	+	17.70878	NA	intron (NM_001018057, intron 5 of 6)	intron (NM_001018057, intron 5 of 6)	42001	NM_001018057	27122	Hs.292156	NM_013253	HPRD:05659	DKK3	REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_44749	chr18	14934999	14935519	+	17.70878	NA	Intergenic	Intergenic	-11007	NR_104164	400644	Hs.514732	NR_104164	ENSG00000266554	LINC01443	-	long intergenic non-protein coding RNA 1443	ncRNA
19-PTNLD28-TUMOR_peak_48377	chr19	29353209	29353396	+	17.70878	NA	Intergenic	LTR8A|LTR|ERV1	-102736	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
19-PTNLD28-TUMOR_peak_2683	chr1	40254335	40254632	+	17.70735	NA	promoter-TSS (NM_001720)	promoter-TSS (NM_001720)	50	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
19-PTNLD28-TUMOR_peak_84865	chr6	3179030	3179228	+	17.70060	NA	Intergenic	Intergenic	16872	NR_038296	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	ncRNA
19-PTNLD28-TUMOR_peak_45904	chr18	55487014	55487234	+	17.70060	NA	Intergenic	Intergenic	-16797	NM_005603	5205	Hs.216623	NM_005603	HPRD:03867	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_4196	chr1	67855783	67856011	+	17.69781	NA	intron (NR_047583, intron 13 of 13)	intron (NR_047583, intron 13 of 13)	40226	NM_001018069	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79059	chr5	15292445	15292649	+	17.69781	NA	Intergenic	L1PA3|LINE|L1	-25878	NR_109944	101929454	Hs.453273	NR_109944		LOC101929454	-	uncharacterized LOC101929454	ncRNA
19-PTNLD28-TUMOR_peak_37790	chr16	50872098	50872312	+	17.69781	NA	Intergenic	MIR|SINE|MIR	96176	NM_001042412	1540	Hs.578973	NM_015247	HPRD:05427	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2	cylindromatosis (turban tumor syndrome)	protein-coding
19-PTNLD28-TUMOR_peak_94116	chr7	97642793	97643019	+	17.69781	NA	Intergenic	L1MEc|LINE|L1	-23490	NM_006188	4951	Hs.510456	NM_006188	HPRD:01274	OCM2	OCM	oncomodulin 2	protein-coding
19-PTNLD28-TUMOR_peak_69980	chr3	116654516	116654908	+	17.69781	NA	Intergenic	L2c|LINE|L2	14434	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_60160	chr20	22410793	22411043	+	17.68879	NA	Intergenic	Intergenic	-9637	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
19-PTNLD28-TUMOR_peak_66853	chr3	14715393	14715550	+	17.68879	NA	Intergenic	Intergenic	-1135	NM_001184957	84077	Hs.661452	NM_032137	HPRD:12821	C3orf20	-	chromosome 3 open reading frame 20	protein-coding
19-PTNLD28-TUMOR_peak_56392	chr2	153957840	153957979	+	17.68879	NA	Intergenic	Intergenic	377413	NM_019845	56475	Hs.100890	NM_019845	HPRD:18002	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
19-PTNLD28-TUMOR_peak_109862	chrX	152665635	152665809	+	17.68879	NA	Intergenic	Intergenic	-18059	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_58225	chr2	213930945	213931235	+	17.68879	NA	intron (NM_001079526, intron 4 of 8)	intron (NM_001079526, intron 4 of 8)	83968	NM_016260	22807	Hs.604950	NM_016260	HPRD:05872	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2 (Helios)	protein-coding
19-PTNLD28-TUMOR_peak_87273	chr6	38786531	38786742	+	17.68879	NA	intron (NM_001206927, intron 26 of 92)	intron (NM_001206927, intron 26 of 92)	103519	NM_001206927	1769	Hs.520106	NM_001371	HPRD:04515	DNAH8	ATPase|hdhc9	dynein, axonemal, heavy chain 8	protein-coding
19-PTNLD28-TUMOR_peak_89621	chr6	137580595	137580817	+	17.68879	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40139	NM_000416	3459	Hs.520414	NM_000416	HPRD:00127	IFNGR1	CD119|IFNGR	interferon gamma receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_88462	chr6	80146011	80146264	+	17.68879	NA	Intergenic	Intergenic	101010	NM_181714	167691	Hs.21945	NM_181714	HPRD:10791	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
19-PTNLD28-TUMOR_peak_59894	chr20	14447721	14447875	+	17.68879	NA	intron (NM_080676, intron 3 of 16)	L1PA4|LINE|L1	-87232	NR_104193	140848	Hs.570367	NR_104193		MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49028	chr19	40259045	40259207	+	17.68879	NA	Intergenic	LTR43B|LTR|ERV1	-8108	NM_001143832	342900	Hs.451638	NM_001143832	ENSG00000213921	LEUTX	-	leucine twenty homeobox	protein-coding
19-PTNLD28-TUMOR_peak_72179	chr3	167124789	167124935	+	17.68879	NA	Intergenic	Intergenic	-26777	NM_024687	79740	Hs.478143	NM_024687	HPRD:08015	ZBBX	-	zinc finger, B-box domain containing	protein-coding
19-PTNLD28-TUMOR_peak_16100	chr10	125809160	125809299	+	17.68879	NA	intron (NM_001270765, intron 1 of 5)	MER21C|LTR|ERVL	42711	NM_015892	51363	Hs.287537	NM_014863	HPRD:12203	CHST15	BRAG|GALNAC4S-6ST	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_20535	chr11	90138953	90139201	+	17.68879	NA	intron (NR_104190, intron 1 of 6)	L1HS|LINE|L1	149948	NR_039711	100616186		NR_039711	miRBase:MI0016852	MIR4490	-	microRNA 4490	ncRNA
19-PTNLD28-TUMOR_peak_19814	chr11	71503829	71504045	+	17.68788	NA	intron (NM_001099653, intron 3 of 4)	intron (NM_001099653, intron 3 of 4)	5380	NM_152563	55199	Hs.567527	NM_018172	HPRD:13337	FAM86C1	FAM86C	family with sequence similarity 86, member C1	protein-coding
19-PTNLD28-TUMOR_peak_6004	chr1	120587505	120587812	+	17.68788	NA	intron (NM_024408, intron 1 of 33)	intron (NM_024408, intron 1 of 33)	24659	NM_001200001	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_60080	chr20	19738922	19739107	+	17.68226	NA	Intergenic	CpG	-128151	NM_001242581	54453	Hs.472270	NM_018993	HPRD:15249	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
19-PTNLD28-TUMOR_peak_53361	chr2	70608429	70608678	+	17.68226	NA	Intergenic	Intergenic	-79333	NM_032822	84908	Hs.516077	NM_032822	HPRD:07866	FAM136A	-	family with sequence similarity 136, member A	protein-coding
19-PTNLD28-TUMOR_peak_22326	chr11_gl000202_random	11992	12212	+	17.68226	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_72251	chr3	169945949	169946310	+	17.68226	NA	intron (NM_002740, intron 1 of 17)	AluJb|SINE|Alu	5909	NM_002740	5584	Hs.478199	NM_002740	HPRD:02105	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C, iota	protein-coding
19-PTNLD28-TUMOR_peak_72894	chr3	185695283	185695453	+	17.67689	NA	intron (NR_033752, intron 5 of 5)	intron (NR_033752, intron 5 of 5)	17610	NR_033752	344887	Hs.128803	NR_033752	ENSG00000171658	LOC344887	-	NmrA-like family domain containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_9882	chr1	209741065	209741367	+	17.67689	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-15829	NM_020439	57172	Hs.199068	NM_020439	HPRD:10807	CAMK1G	CLICK3|CLICKIII|VWS1|dJ272L16.1	calcium/calmodulin-dependent protein kinase IG	protein-coding
19-PTNLD28-TUMOR_peak_96308	chr7	150574253	150574449	+	17.67689	NA	Intergenic	Intergenic	24786	NM_001091	26	Hs.647097	NM_001091	HPRD:00088	AOC1	ABP|ABP1|DAO|DAO1|KAO	amine oxidase, copper containing 1	protein-coding
19-PTNLD28-TUMOR_peak_8134	chr1	170532239	170532407	+	17.67689	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	31060	NM_152281	92344	Hs.183702	NM_152281	HPRD:12144	GORAB	GO|NTKLBP1|SCYL1BP1	golgin, RAB6-interacting	protein-coding
19-PTNLD28-TUMOR_peak_35833	chr16	2700566	2700748	+	17.67689	NA	Intergenic	Intergenic	11674	NR_024492	645644	Hs.597810	NR_024492		FLJ42627	-	uncharacterized LOC645644	ncRNA
19-PTNLD28-TUMOR_peak_75831	chr4	78288135	78288327	+	17.67689	NA	Intergenic	Intergenic	-144676	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_8922	chr1	186798000	186798259	+	17.67689	NA	promoter-TSS (NM_024420)	promoter-TSS (NM_024420)	97	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_17475	chr11	17620623	17620746	+	17.67689	NA	intron (NM_001277269, intron 29 of 54)	intron (NM_001277269, intron 29 of 54)	51764	NM_001292063	340990	Hs.688380	NM_198497	ENSG00000188162	OTOG	DFNB18B|MLEMP|OTGN	otogelin	protein-coding
19-PTNLD28-TUMOR_peak_24495	chr12	53973410	53973712	+	17.67689	NA	intron (NR_073163, intron 2 of 12)	intron (NR_073163, intron 2 of 12)	46219	NM_001206683	11016	Hs.12286	NM_006856	HPRD:06968	ATF7	ATFA	activating transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_84785	chr6	2397607	2397764	+	17.67689	NA	intron (NR_046229, intron 4 of 6)	intron (NR_046229, intron 4 of 6)	151698	NR_046229	100508120	Hs.188825	NR_046229		GMDS-AS1	-	GMDS antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_49606	chr19	47939995	47940184	+	17.67689	NA	intron (NM_015063, intron 8 of 9)	intron (NM_015063, intron 8 of 9)	-17304	NM_020160	56917	Hs.380923	NM_020160	HPRD:14386	MEIS3	MRG2	Meis homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_62865	chr21	18612006	18612667	+	17.67689	NA	Intergenic	Intergenic	-198872	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_68945	chr3	70430696	70430839	+	17.67689	NA	Intergenic	Intergenic	381872	NR_110000	101927152	Hs.382046	NR_110000	ENSG00000240405	LINC01212	-	long intergenic non-protein coding RNA 1212	ncRNA
19-PTNLD28-TUMOR_peak_25898	chr12	104302770	104302956	+	17.67689	NA	intron (NR_027249, intron 3 of 15)	L2a|LINE|L2	21126	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	GNN	-	Grp94 neighboring nucleotidase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102906	chr9	35923876	35924103	+	17.67504	NA	Intergenic	LTR54|LTR|ERV1	14509	NR_024283	158376	Hs.302677	NR_024283	ENSG00000235387	LINC00961	-	long intergenic non-protein coding RNA 961	ncRNA
19-PTNLD28-TUMOR_peak_98684	chr8	49647816	49648020	+	17.67122	NA	promoter-TSS (NR_024605)	promoter-TSS (NR_024605)	-48	NR_024605	79645	Hs.23245	NM_024593	HPRD:08565	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_44544	chr18	10398639	10398863	+	17.67122	NA	Intergenic	Intergenic	15616	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
19-PTNLD28-TUMOR_peak_35938	chr16	3740499	3740707	+	17.67122	NA	intron (NM_001272049, intron 1 of 16)	intron (NM_001272049, intron 1 of 16)	26995	NM_016292	10131	Hs.30345	NM_016292	HPRD:05868	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81032	chr5	84934721	84934866	+	17.67122	NA	Intergenic	L1PA3|LINE|L1	-643469	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	neuroblastoma breakpoint family, member 22, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_69636	chr3	108192699	108192883	+	17.67122	NA	intron (NM_014981, intron 13 of 41)	MER20B|DNA|hAT-Charlie	55378	NM_014981	22989	Hs.731060	NM_014981	ENSG00000144821	MYH15	-	myosin, heavy chain 15	protein-coding
19-PTNLD28-TUMOR_peak_73139	chr3	189497348	189497500	+	17.67122	NA	intron (NM_003722, intron 3 of 13)	intron (NM_003722, intron 3 of 13)	-10025	NM_001114980	8626	Hs.137569	NM_003722	HPRD:04469	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
19-PTNLD28-TUMOR_peak_18737	chr11	58903308	58903623	+	17.67122	NA	intron (NR_110184, intron 3 of 3)	intron (NR_110184, intron 3 of 3)	6816	NR_110184	101927204	Hs.659259	NR_110184	ENSG00000245571	LOC101927204	-	uncharacterized LOC101927204	ncRNA
19-PTNLD28-TUMOR_peak_33661	chr15	56285547	56286032	+	17.67122	NA	5' UTR (NM_006154, exon 1 of 29)	5' UTR (NM_006154, exon 1 of 29)	155	NM_006154	4734	Hs.1565	NM_006154	HPRD:03786	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_94066	chr7	96284165	96284343	+	17.67122	NA	intron (NR_038948, intron 2 of 4)	intron (NR_038948, intron 2 of 4)	9396	NR_038948	100506136	Hs.729869	NR_038948		LOC100506136	-	uncharacterized LOC100506136	ncRNA
19-PTNLD28-TUMOR_peak_25872	chr12	103273040	103273252	+	17.67122	NA	intron (NM_000277, intron 3 of 12)	intron (NM_000277, intron 3 of 12)	38235	NM_000277	5053	Hs.603740	NM_000277	HPRD:08943	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
19-PTNLD28-TUMOR_peak_88294	chr6	73571739	73572184	+	17.67122	NA	intron (NM_001160133, intron 1 of 14)	intron (NM_001160133, intron 1 of 14)	105515	NR_036244	100423005		NR_036244	miRBase:MI0015890	MIR4282	-	microRNA 4282	ncRNA
19-PTNLD28-TUMOR_peak_77670	chr4	154049160	154049292	+	17.67122	NA	Intergenic	Intergenic	-25044	NM_001130067	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_33690	chr15	57404439	57404719	+	17.67122	NA	intron (NM_207036, intron 5 of 20)	intron (NM_207036, intron 5 of 20)	-107076	NM_207040	6938	Hs.511504	NM_003205	HPRD:02725	TCF12	CRS3|HEB|HTF4|HsT17266|bHLHb20	transcription factor 12	protein-coding
19-PTNLD28-TUMOR_peak_92136	chr7	41098995	41099261	+	17.67122	NA	Intergenic	Intergenic	-42074	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA
19-PTNLD28-TUMOR_peak_44639	chr18	12271703	12271941	+	17.67122	NA	intron (NR_036468, intron 3 of 4)	CpG	17462	NR_036468	1149	Hs.249129	NM_001279		CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
19-PTNLD28-TUMOR_peak_107889	chrX	30975889	30976253	+	17.67122	NA	Intergenic	ERVL-E-int|LTR|ERVL	-68560	NM_152787	257397	Hs.188256	NM_152787	HPRD:06738	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_1225	chr1	19795989	19796169	+	17.67122	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	15122	NM_001282162	832	Hs.432760	NM_004930	HPRD:11872	CAPZB	CAPB|CAPPB|CAPZ	capping protein (actin filament) muscle Z-line, beta	protein-coding
19-PTNLD28-TUMOR_peak_19925	chr11	72975451	72975703	+	17.66896	NA	promoter-TSS (NM_176797)	promoter-TSS (NM_176797)	-20	NM_001277207	5031	Hs.16362	NM_004154	HPRD:03906	P2RY6	P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding
19-PTNLD28-TUMOR_peak_85286	chr6	10519261	10519393	+	17.66896	NA	Intergenic	Intergenic	-2241	NM_145649	2651	Hs.519884	NM_001491	HPRD:02695	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
19-PTNLD28-TUMOR_peak_15034	chr10	97573817	97574271	+	17.66896	NA	intron (NR_038444, intron 4 of 5)	intron (NR_038444, intron 4 of 5)	58371	NM_001164182	953	Hs.576612	NM_001776	HPRD:09047	ENTPD1	ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_24786	chr12	57983077	57983290	+	17.66711	NA	Intergenic	LTR13A|LTR|ERVK	-1759	NM_001146259	79837	Hs.745011	NM_024779	HPRD:15138	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding
19-PTNLD28-TUMOR_peak_105202	chr9	110246525	110246677	+	17.65924	NA	TTS (NM_004235)	TTS (NM_004235)	5446	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_46514	chr19	782619	782827	+	17.65495	NA	Intergenic	Intergenic	-14669	NM_031991	5725	Hs.172550	NM_002819	HPRD:02823	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_33816	chr15	60654964	60655220	+	17.65339	NA	intron (NM_001002857, intron 5 of 13)	AluSz6|SINE|Alu	35093	NM_001002858	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_97190	chr8	11871651	11871771	+	17.65113	NA	Intergenic	Intergenic	-17951	NM_001033019	613211	Hs.631852	NM_001033019		DEFB134	-	defensin, beta 134	protein-coding
19-PTNLD28-TUMOR_peak_103767	chr9	73215992	73216875	+	17.65113	NA	intron (NM_001007471, intron 19 of 24)	intron (NM_001007471, intron 19 of 24)	-186860	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_12440	chr10	24552275	24552482	+	17.65113	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	-12236	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_34119	chr15	67357898	67358201	+	17.65113	NA	promoter-TSS (NM_005902)	promoter-TSS (NM_005902)	-146	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_16193	chr10	127730949	127731193	+	17.65113	NA	intron (NM_001288974, intron 18 of 18)	MIRb|SINE|MIR	-69229	NR_102707	101410540	Hs.557889	NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58098	chr2	208670636	208670805	+	17.65113	NA	Intergenic	AluJr|SINE|Alu	-36577	NM_003468	7855	Hs.17631	NM_003468	HPRD:03427	FZD5	C2orf31|HFZ5	frizzled class receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_23202	chr12	14392290	14392629	+	17.63328	NA	Intergenic	Intergenic	-126107	NM_018179	55729	Hs.504856	NM_018179	HPRD:09811	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_95832	chr7	140192892	140193131	+	17.63328	NA	Intergenic	Intergenic	-13642	NM_001291663	23608	Hs.744883	NM_013446	HPRD:09673	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_66829	chr3	14483173	14483375	+	17.63328	NA	intron (NM_001134367, intron 10 of 22)	intron (NM_001134367, intron 10 of 22)	39198	NM_001134368	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_94091	chr7	97242967	97243199	+	17.63328	NA	Intergenic	L1HS|LINE|L1	-118188	NM_003182	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_49987	chr19	51208750	51208988	+	17.63328	NA	intron (NM_016148, intron 7 of 22)	MER20|DNA|hAT-Charlie	11326	NM_016148	50944	Hs.274255	NM_016148	HPRD:05413	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_20999	chr11	107713256	107713410	+	17.63044	NA	intron (NM_017515, intron 1 of 7)	AluSz6|SINE|Alu	16581	NM_017515	54733	Hs.524014	NM_017515	HPRD:15377	SLC35F2	HSNOV1	solute carrier family 35, member F2	protein-coding
19-PTNLD28-TUMOR_peak_60919	chr20	36615377	36615679	+	17.62683	NA	intron (NM_014657, intron 8 of 8)	intron (NM_014657, intron 8 of 8)	46305	NM_014657	9675	Hs.655481	NM_014657	HPRD:13799	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46137	chr18	61638146	61638375	+	17.61943	NA	intron (NM_198833, intron 1 of 6)	intron (NM_198833, intron 1 of 6)	997	NM_198833	5271	Hs.368077	NM_002640	HPRD:03412	SERPINB8	CAP2|PI8	serpin peptidase inhibitor, clade B (ovalbumin), member 8	protein-coding
19-PTNLD28-TUMOR_peak_46997	chr19	7918246	7918518	+	17.61067	NA	intron (NM_145245, intron 10 of 18)	intron (NM_145245, intron 10 of 18)	6996	NM_001159944	115704	Hs.26870	NM_145245	HPRD:10044	EVI5L	-	ecotropic viral integration site 5-like	protein-coding
19-PTNLD28-TUMOR_peak_66471	chr3	9746045	9746174	+	17.61012	NA	intron (NM_153635, intron 1 of 19)	CpG	599	NM_153635	151835	Hs.121335	NM_153635	HPRD:17307	CPNE9	-	copine family member IX	protein-coding
19-PTNLD28-TUMOR_peak_95857	chr7	140460441	140460577	+	17.61012	NA	intron (NM_004333, intron 13 of 17)	L1PA3|LINE|L1	-63632	NR_024454	100134713	Hs.534141	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95058	chr7	127269421	127269712	+	17.61012	NA	Intergenic	Intergenic	-13786	NM_006193	5078	Hs.129706	NM_006193	HPRD:01333	PAX4	KPD|MODY9	paired box 4	protein-coding
19-PTNLD28-TUMOR_peak_48283	chr19	23598441	23598621	+	17.61012	NA	Intergenic	Intergenic	-20169	NM_003430	7644	Hs.654471	NM_003430	HPRD:04916	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
19-PTNLD28-TUMOR_peak_18860	chr11	61159707	61160292	+	17.61012	NA	5' UTR (NM_016499, exon 1 of 5)	5' UTR (NM_016499, exon 1 of 5)	134	NM_016499	51259	Hs.26745	NM_016499	HPRD:14439	TMEM216	-	transmembrane protein 216	protein-coding
19-PTNLD28-TUMOR_peak_24773	chr12	57856507	57856734	+	17.60701	NA	intron (NM_001160045, intron 1 of 9)	intron (NM_001160045, intron 1 of 9)	2686	NM_001167609	2735	Hs.632702	NM_005269	HPRD:01311	GLI1	GLI	GLI family zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_86959	chr6	34682510	34682677	+	17.60701	NA	Intergenic	L1MC5|LINE|L1	-17966	NM_022758	64771	Hs.643498	NM_022758	HPRD:12837	C6orf106	FP852|dJ391O22.4	chromosome 6 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_81076	chr5	88609710	88610075	+	17.60600	NA	Intergenic	Intergenic	-409970	NM_001193347	4208	Hs.649965	NM_002397	HPRD:02809	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
19-PTNLD28-TUMOR_peak_7926	chr1	165883514	165883683	+	17.60600	NA	Intergenic	Intergenic	6440	NR_037431	100500832		NR_037431		MIR3658	-	microRNA 3658	ncRNA
19-PTNLD28-TUMOR_peak_8071	chr1	168578505	168578939	+	17.60600	NA	Intergenic	Intergenic	33011	NM_002995	6375	Hs.546295	NM_002995	HPRD:02595	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	chemokine (C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_78864	chr5	10118316	10118588	+	17.60600	NA	Intergenic	Intergenic	131569	NR_047669	134145	Hs.481569	NM_199133		FAM173B	JS-2	family with sequence similarity 173, member B	protein-coding
19-PTNLD28-TUMOR_peak_58097	chr2	208657040	208657205	+	17.60600	NA	Intergenic	Intergenic	-22979	NM_003468	7855	Hs.17631	NM_003468	HPRD:03427	FZD5	C2orf31|HFZ5	frizzled class receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_19365	chr11	65929409	65929659	+	17.60600	NA	intron (NM_018026, intron 1 of 23)	MLT1C|LTR|ERVL-MaLR	91710	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22109	chr11	129512955	129513201	+	17.60600	NA	Intergenic	Intergenic	-25914	NR_120582	101929557	Hs.385785	NR_120582		LINC01395	-	long intergenic non-protein coding RNA 1395	ncRNA
19-PTNLD28-TUMOR_peak_11120	chr1	236066407	236066634	+	17.60600	NA	Intergenic	MIRb|SINE|MIR	-19512	NM_001301365	1130	Hs.532411	NM_000081	HPRD:06060	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding
19-PTNLD28-TUMOR_peak_104279	chr9	88656925	88657093	+	17.60125	NA	intron (NM_177937, intron 5 of 9)	AluY|SINE|Alu	57501	NM_016548	51280	Hs.494337	NM_016548	HPRD:08428	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41038	chr17	32575558	32575819	+	17.60125	NA	Intergenic	Intergenic	-6608	NM_002982	6347	Hs.303649	NM_002982	HPRD:01149	CCL2	GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF	chemokine (C-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_70198	chr3	122823558	122823702	+	17.60009	NA	intron (NR_028444, intron 5 of 15)	intron (NR_028444, intron 5 of 15)	37774	NR_028444	10954	Hs.477352	NM_006810	HPRD:08334	PDIA5	PDIR	protein disulfide isomerase family A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_80932	chr5	79789431	79789619	+	17.60009	NA	intron (NM_205548, intron 1 of 5)	MER11A|LTR|ERVK	5725	NM_205548	167555	Hs.338182	NM_205548	HPRD:18272	FAM151B	UNQ9217	family with sequence similarity 151, member B	protein-coding
19-PTNLD28-TUMOR_peak_83831	chr5	169611177	169611299	+	17.60009	NA	Intergenic	Intergenic	14907	NR_108022	100507267	Hs.634846	NR_108022		LINC01187	CTB-27N1.1|KIDR	long intergenic non-protein coding RNA 1187	ncRNA
19-PTNLD28-TUMOR_peak_9858	chr1	208619083	208619478	+	17.60009	NA	Intergenic	L1PB3|LINE|L1	-201615	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_56230	chr2	149846527	149846681	+	17.60009	NA	intron (NR_111932, intron 8 of 19)	intron (NR_111932, intron 8 of 19)	42260	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
19-PTNLD28-TUMOR_peak_20505	chr11	88277588	88277846	+	17.60009	NA	intron (NM_001143831, intron 7 of 8)	intron (NM_001143831, intron 7 of 8)	39973	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29529	chr14	24101242	24101383	+	17.60009	NA	Intergenic	Intergenic	-4261	NM_182908	10202	Hs.272499	NM_005794	HPRD:07483	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase (SDR family) member 2	protein-coding
19-PTNLD28-TUMOR_peak_61042	chr20	38509616	38509769	+	17.60009	NA	Intergenic	Intergenic	-123411	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_109706	chrX	148552528	148552692	+	17.60009	NA	Intergenic	CpG	34274	NM_000202	3423	Hs.460960	NM_000202	HPRD:02402	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_105553	chr9	116669625	116669932	+	17.60009	NA	intron (NM_133374, intron 1 of 13)	intron (NM_133374, intron 1 of 13)	31216	NM_133374	114991	Hs.349208	NM_133374	HPRD:18719	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
19-PTNLD28-TUMOR_peak_532	chr1	8524531	8524789	+	17.60009	NA	intron (NM_012102, intron 12 of 23)	L2a|LINE|L2	-40913	NM_001042682	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_34623	chr15	76621451	76621597	+	17.60009	NA	Intergenic	Intergenic	-7623	NM_145805	64843	Hs.444677	NM_145805	HPRD:11053	ISL2	-	ISL LIM homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_97791	chr8	26512993	26513300	+	17.60009	NA	exon (NM_001386, exon 14 of 14)	exon (NM_001386, exon 14 of 14)	77225	NM_001244604	1808	Hs.593187	NM_001386	HPRD:03914	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_71929	chr3	156817231	156817459	+	17.60009	NA	non-coding (NR_034008, exon 2 of 3)	non-coding (NR_034008, exon 2 of 3)	9675	NR_034008	100498859	Hs.633655	NR_034008	ENSG00000241135	LINC00881	-	long intergenic non-protein coding RNA 881	ncRNA
19-PTNLD28-TUMOR_peak_7464	chr1	158117291	158117480	+	17.59524	NA	Intergenic	LTR78B|LTR|ERV1	-6955	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_77925	chr4	165597124	165597600	+	17.59257	NA	intron (NR_049864, intron 2 of 2)	L1P2|LINE|L1	-77921	NR_038834	100505989	Hs.328236	NR_038834	ENSG00000248771	LINC01207	-	long intergenic non-protein coding RNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_90167	chr6	155522937	155523221	+	17.59257	NA	intron (NM_012454, intron 13 of 25)	intron (NM_012454, intron 13 of 25)	-15018	NM_001010927	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_42827	chr17	61689723	61689843	+	17.59257	NA	Intergenic	Intergenic	-10018	NM_002401	4215	Hs.29282	NM_002401	HPRD:03965	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_16590	chr11	1616747	1616935	+	17.59257	NA	intron (NR_021489, intron 1 of 1)	intron (NR_021489, intron 1 of 1)	2683	NM_001004325	440021	Hs.633229	NM_001004325	HPRD:17249	KRTAP5-2	KRTAP5-8|KRTAP5.2	keratin associated protein 5-2	protein-coding
19-PTNLD28-TUMOR_peak_36304	chr16	11591297	11591541	+	17.59257	NA	Intergenic	Intergenic	32303	NR_110907	101927131	Hs.569654	NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
19-PTNLD28-TUMOR_peak_1189	chr1	19147309	19147467	+	17.59257	NA	Intergenic	Intergenic	38767	NM_152232	80834	Hs.553548	NM_152232	HPRD:06940	TAS1R2	GPR71|T1R2|TR2	taste receptor, type 1, member 2	protein-coding
19-PTNLD28-TUMOR_peak_62244	chr20	55819316	55819610	+	17.58686	NA	intron (NM_001719, intron 1 of 6)	intron (NM_001719, intron 1 of 6)	22244	NM_001719	655	Hs.473163	NM_001719	HPRD:00212	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
19-PTNLD28-TUMOR_peak_36461	chr16	14995364	14995992	+	17.58686	NA	TTS (NR_036145)	TTS (NR_036145)	313	NR_036143	100422886		NR_036143	miRBase:MI0014216	MIR3179-2	-	microRNA 3179-2	ncRNA
19-PTNLD28-TUMOR_peak_95957	chr7	142246165	142246381	+	17.57349	NA	Intergenic	Intergenic	-127858	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_58910	chr2	234119934	234120145	+	17.57349	NA	Intergenic	Intergenic	-40178	NM_001190266	55054	Hs.529322	NM_017974	HPRD:16498	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_20162	chr11	76411613	76411863	+	17.56950	NA	intron (NR_024042, intron 13 of 20)	intron (NR_024042, intron 13 of 20)	21095	NR_024042	390226	Hs.440026	NR_024042		GUCY2EP	GC-E|GCD|GUCY2E	guanylate cyclase 2E, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_59208	chr2	240673467	240673726	+	17.56950	NA	Intergenic	Intergenic	-10958	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_16834	chr11	5626134	5626468	+	17.56950	NA	intron (NM_001003818, intron 3 of 7)	intron (NM_001003818, intron 3 of 7)	8436	NM_001003818	117854	Hs.729048	NM_058166	HPRD:12123	TRIM6	RNF89	tripartite motif containing 6	protein-coding
19-PTNLD28-TUMOR_peak_49135	chr19	41537958	41538271	+	17.56950	NA	Intergenic	L2|LINE|L2	40910	NM_000767	1555	Hs.1360	NM_000767	HPRD:00477	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450, family 2, subfamily B, polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_110154	chrY	9983898	9984200	+	17.56950	NA	Intergenic	Intergenic	235642	NR_001540	252955	Hs.522846	NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis-specific transcript, Y-linked 23 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_39048	chr16	83988204	83988352	+	17.56662	NA	intron (NM_182981, intron 1 of 5)	intron (NM_182981, intron 1 of 5)	1451	NM_182981	29948	Hs.128055	NM_013370	HPRD:06412	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_53359	chr2	70588211	70588415	+	17.56143	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-59093	NM_032822	84908	Hs.516077	NM_032822	HPRD:07866	FAM136A	-	family with sequence similarity 136, member A	protein-coding
19-PTNLD28-TUMOR_peak_16146	chr10	126736700	126736949	+	17.56143	NA	intron (NM_001290214, intron 2 of 10)	intron (NM_001290214, intron 2 of 10)	-15385	NR_036178	100423041		NR_036178		MIR4296	-	microRNA 4296	ncRNA
19-PTNLD28-TUMOR_peak_60025	chr20	18201585	18201846	+	17.56143	NA	Intergenic	Intergenic	-67212	NM_001282996	7692	Hs.472221	NM_003434	HPRD:04964	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
19-PTNLD28-TUMOR_peak_39123	chr16	84874372	84874814	+	17.55447	NA	intron (NM_031476, intron 2 of 14)	L2b|LINE|L2	21006	NM_031476	83716	Hs.513779	NM_031476	HPRD:13186	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_2665	chr1	40041420	40041643	+	17.55306	NA	exon (NM_003819, exon 1 of 16)	exon (NM_003819, exon 1 of 16)	990	NM_001135654	8761	Hs.169900	NM_003819	HPRD:04557	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein, cytoplasmic 4 (inducible form)	protein-coding
19-PTNLD28-TUMOR_peak_100855	chr8	129071234	129071407	+	17.55207	NA	intron (NR_003367, intron 4 of 7)	intron (NR_003367, intron 4 of 7)	9922	NR_031612	100302175		NR_031612	miRBase:MI0006340	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_52989	chr2	62198054	62198207	+	17.55207	NA	intron (NM_152516, intron 1 of 2)	AluJb|SINE|Alu	65327	NM_152516	150684	Hs.468702	NM_152516		COMMD1	C2orf5|MURR1	copper metabolism (Murr1) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64212	chr22	17680088	17680557	+	17.55207	NA	intron (NM_001282227, intron 4 of 9)	intron (NM_001282227, intron 4 of 9)	351	NM_177405	51816	Hs.170310	NM_017424	HPRD:10462	CECR1	ADA2|ADGF|IDGFL|PAN|SNEDS	cat eye syndrome chromosome region, candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_9662	chr1	205633498	205633667	+	17.55207	NA	intron (NM_033102, intron 2 of 4)	intron (NM_033102, intron 2 of 4)	16048	NM_033102	85414	Hs.278695	NM_033102	HPRD:16312	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45, member 3	protein-coding
19-PTNLD28-TUMOR_peak_54184	chr2	95650756	95651201	+	17.55207	NA	Intergenic	Intergenic	-37891	NR_037597	442028	Hs.611545	NR_037597	ENSG00000259848	LOC442028	-	uncharacterized LOC442028	ncRNA
19-PTNLD28-TUMOR_peak_6583	chr1	149272977	149273091	+	17.55207	NA	Intergenic	MER66C|LTR|ERV1	-14096	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
19-PTNLD28-TUMOR_peak_87496	chr6	42246878	42247276	+	17.55207	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-61444	NM_018141	55173	Hs.380887	NM_018141	HPRD:14775	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
19-PTNLD28-TUMOR_peak_61467	chr20	45587756	45587941	+	17.54788	NA	intron (NM_005244, intron 1 of 15)	intron (NM_005244, intron 1 of 15)	64585	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_18596	chr11	56614589	56614777	+	17.54788	NA	Intergenic	Intergenic	-1271	NR_110137	101927120	Hs.472675	NR_110136	ENSG00000255433	LOC101927120	-	uncharacterized LOC101927120	ncRNA
19-PTNLD28-TUMOR_peak_5235	chr1	104068293	104069061	+	17.54788	NA	promoter-TSS (NM_017619)	promoter-TSS (NM_017619)	99	NM_017619	55599	Hs.632423	NM_017619	HPRD:15267	RNPC3	RBM40|RNP|SNRNP65	RNA-binding region (RNP1, RRM) containing 3	protein-coding
19-PTNLD28-TUMOR_peak_12878	chr10	34024574	34024834	+	17.54788	NA	Intergenic	Intergenic	36904	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_6383	chr1	146250871	146251033	+	17.54684	NA	intron (NR_104217, intron 2 of 17).2	intron (NR_104217, intron 2 of 17).2	-122905	NM_001278141	149013	Hs.666981	NM_001278141	ENSG00000186275	NBPF12	COAS1|KIAA1245	neuroblastoma breakpoint family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_3868	chr1	59964191	59964437	+	17.54684	NA	intron (NM_001113411, intron 6 of 16)	MER5A|DNA|hAT-Charlie	-16987	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_70234	chr3	123379222	123379389	+	17.54016	NA	intron (NM_053025, intron 23 of 33)	intron (NM_053025, intron 23 of 33)	-29186	NR_046629	100873940	Hs.667316	NR_046629		MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_30987	chr14	69291522	69291814	+	17.53579	NA	Intergenic	Intergenic	-28708	NM_001244701	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_92264	chr7	44190183	44190416	+	17.53579	NA	intron (NM_033507, intron 4 of 9)	intron (NM_033507, intron 4 of 9)	8588	NM_033507	2645	Hs.1270	NM_000162	HPRD:00680	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase (hexokinase 4)	protein-coding
19-PTNLD28-TUMOR_peak_92456	chr7	47675011	47675148	+	17.53579	NA	Intergenic	Intergenic	13542	NR_108090	101929086	Hs.563487	NR_108090	ENSG00000236078	LINC01447	-	long intergenic non-protein coding RNA 1447	ncRNA
19-PTNLD28-TUMOR_peak_83591	chr5	159399052	159399368	+	17.53579	NA	exon (NM_000679, exon 2 of 2)	exon (NM_000679, exon 2 of 2)	-36897	NM_001282500	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_64121	chr21	47689426	47689710	+	17.53579	NA	intron (NM_003906, intron 9 of 27)	intron (NM_003906, intron 9 of 27)	15740	NM_003906	8888	Hs.389037	NM_003906	HPRD:04483	MCM3AP	GANP|MAP80|SAC3	minichromosome maintenance complex component 3 associated protein	protein-coding
19-PTNLD28-TUMOR_peak_80153	chr5	60474176	60474366	+	17.53579	NA	intron (NR_109908, intron 1 of 3)	intron (NR_109908, intron 1 of 3)	-15969	NM_001048249	643155	Hs.508479	NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
19-PTNLD28-TUMOR_peak_15585	chr10	111930925	111931095	+	17.53579	NA	Intergenic	Intergenic	-36353	NM_130439	4601	Hs.602078	NM_005962	HPRD:02486	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
19-PTNLD28-TUMOR_peak_37107	chr16	29229995	29230251	+	17.53579	NA	Intergenic	CpG	-83485	NR_002939	440352	Hs.658149	NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_80155	chr5	60524535	60524803	+	17.53579	NA	intron (NR_109908, intron 3 of 3)	intron (NR_109908, intron 3 of 3)	-66367	NM_001048249	643155	Hs.508479	NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
19-PTNLD28-TUMOR_peak_89414	chr6	128812567	128812751	+	17.53579	NA	intron (NM_001291983, intron 1 of 18)	intron (NM_001291983, intron 1 of 18)	29160	NM_001291983	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_96200	chr7	149007296	149007666	+	17.53579	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	25109	NR_036573	155060	Hs.490512	NR_015357	HPRD:17309	LOC155060	-	AI894139 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_17040	chr11	9406409	9406986	+	17.53102	NA	intron (NM_006391, intron 1 of 24)	CpG	528	NM_006391	10527	Hs.744911	NM_006391	HPRD:09280	IPO7	Imp7|RANBP7	importin 7	protein-coding
19-PTNLD28-TUMOR_peak_18389	chr11	46260804	46260979	+	17.53102	NA	Intergenic	CpG	-38298	NM_052854	90993	Hs.405961	NM_052854	HPRD:16751	CREB3L1	OASIS	cAMP responsive element binding protein 3-like 1	protein-coding
19-PTNLD28-TUMOR_peak_98963	chr8	61862463	61862616	+	17.53102	NA	Intergenic	Intergenic	17768	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_78803	chr5	8934705	8934832	+	17.53102	NA	Intergenic	Intergenic	94924	NR_109932	101929284	Hs.403715	NR_109932	ENSG00000250198	LOC101929284	-	uncharacterized LOC101929284	ncRNA
19-PTNLD28-TUMOR_peak_13522	chr10	50009090	50009223	+	17.53102	NA	intron (NM_020945, intron 24 of 61)	intron (NM_020945, intron 24 of 61)	113124	NM_001006939	474354	Hs.202438	NM_001006939	HPRD:17450	LRRC18	UNQ933|UNQ9338|VKGE9338	leucine rich repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_78514	chr4	190767351	190768193	+	17.52442	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-94202	NM_004477	2483	Hs.203772	NM_004477	HPRD:03176	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_35584	chr16	127505	127786	+	17.52442	NA	promoter-TSS (NM_002434)	promoter-TSS (NM_002434)	-524	NM_002434	4350	Hs.459596	NM_002434	HPRD:06766	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine-DNA glycosylase	protein-coding
19-PTNLD28-TUMOR_peak_83163	chr5	149402353	149402534	+	17.51968	NA	intron (NM_014983, intron 6 of 19)	AluJb|SINE|Alu	-21713	NM_030953	81789	Hs.169333	NM_030953	HPRD:18190	TIGD6	-	tigger transposable element derived 6	protein-coding
19-PTNLD28-TUMOR_peak_48395	chr19	29684163	29684482	+	17.51414	NA	Intergenic	Intergenic	19814	NM_006003	7386	Hs.743307	NM_006003		UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_3411	chr1	49568553	49568771	+	17.51414	NA	intron (NM_032785, intron 4 of 13)	intron (NM_032785, intron 4 of 13)	-326115	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_52555	chr2	46344626	46344758	+	17.51414	NA	intron (NM_005400, intron 11 of 14)	intron (NM_005400, intron 11 of 14)	-179849	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63577	chr21	40693850	40694062	+	17.51414	NA	intron (NR_046655, intron 2 of 2)	L2a|LINE|L2	6323	NR_046655	100874093	Hs.588102	NR_046655	ENSG00000238141	BRWD1-AS1	-	BRWD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14909	chr10	93668595	93668811	+	17.51414	NA	exon (NM_152429, exon 2 of 2)	exon (NM_152429, exon 2 of 2)	555	NM_152429	143282	Hs.466120	NM_152429	HPRD:08499	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_38592	chr16	71035591	71035762	+	17.51414	NA	intron (NM_001270974, intron 23 of 85)	intron (NM_001270974, intron 23 of 85)	-200615	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_10395	chr1	224780817	224781051	+	17.51414	NA	Intergenic	AluJb|SINE|Alu	-23245	NM_152495	149111	Hs.731723	NM_152495	HPRD:08799	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
19-PTNLD28-TUMOR_peak_106904	chr9	141121390	141121522	+	17.51400	NA	exon (NM_001145249, exon 5 of 7)	exon (NM_001145249, exon 5 of 7)	14819	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	family with sequence similarity 157, member B	protein-coding
19-PTNLD28-TUMOR_peak_9099	chr1	199702435	199702577	+	17.51208	NA	Intergenic	Intergenic	-294224	NM_003822	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_6897	chr1	152715962	152716136	+	17.51208	NA	Intergenic	Intergenic	-14457	NM_001025231	448834	Hs.149386	NM_001025231	ENSG00000203786	KPRP	C1orf45	keratinocyte proline-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_83650	chr5	160365605	160365861	+	17.51208	NA	promoter-TSS (NR_027111)	promoter-TSS (NR_027111)	-100	NR_027111	285629	Hs.554279	NR_027111	ENSG00000253417	LOC285629	-	uncharacterized LOC285629	ncRNA
19-PTNLD28-TUMOR_peak_21823	chr11	123535994	123536231	+	17.51208	NA	Intergenic	Intergenic	-10797	NM_001040151	55800	Hs.4865	NM_018400	HPRD:10497	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium channel, voltage-gated, type III, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_56553	chr2	159975155	159975331	+	17.51208	NA	intron (NM_001145909, intron 4 of 26)	intron (NM_001145909, intron 4 of 26)	-68103	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_28667	chr13	92050723	92051318	+	17.51208	NA	5' UTR (NM_004466, exon 1 of 8)	5' UTR (NM_004466, exon 1 of 8)	147	NM_004466	2262	Hs.655675	NM_004466	HPRD:03902	GPC5	-	glypican 5	protein-coding
19-PTNLD28-TUMOR_peak_40976	chr17	30668985	30669331	+	17.51208	NA	promoter-TSS (NM_022344)	promoter-TSS (NM_022344)	70	NM_022344	64149	Hs.655257	NM_022344		C17orf75	NJMU-R1	chromosome 17 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_108195	chrX	47572242	47572467	+	17.51208	NA	intron (NR_033924, intron 1 of 3)	LTR19B|LTR|ERV1	5764	NR_033924	392459	Hs.562045	NR_033924	ENSG00000187893	CXXC1P1	CXorf25|NCRNA00236	CXXC finger protein 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_28180	chr13	48356511	48356655	+	17.51208	NA	Intergenic	L1PA2|LINE|L1	218879	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_41508	chr17	40346282	40346627	+	17.51208	NA	promoter-TSS (NM_001142623)	promoter-TSS (NM_001142623)	96	NM_001142622	84514	Hs.38039	NM_032484	HPRD:16352	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_102972	chr9	37100441	37100598	+	17.51208	NA	Intergenic	Intergenic	-19950	NR_110317	84186	Hs.654700	NM_032226	HPRD:15703	ZCCHC7	AIR1	zinc finger, CCHC domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_87168	chr6	37067303	37067492	+	17.51027	NA	Intergenic	U6|snRNA|snRNA	-70525	NM_002648	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_71497	chr3	145813768	145813893	+	17.50607	NA	intron (NM_000935, intron 7 of 18)	SVA_E|Other|Other	65452	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_64084	chr21	47240599	47240767	+	17.50607	NA	Intergenic	Intergenic	15650	NR_038876	100129027	Hs.689591	NR_038876	ENSG00000205424	LOC100129027	-	uncharacterized LOC100129027	ncRNA
19-PTNLD28-TUMOR_peak_11000	chr1	234690657	234690938	+	17.50607	NA	Intergenic	Intergenic	-23272	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
19-PTNLD28-TUMOR_peak_63276	chr21	35296407	35296616	+	17.50607	NA	Intergenic	Intergenic	-7005	NR_038883	100506334	Hs.532855	NR_038883	ENSG00000237945	LINC00649	-	long intergenic non-protein coding RNA 649	ncRNA
19-PTNLD28-TUMOR_peak_61527	chr20	46196783	46197035	+	17.50607	NA	intron (NM_001174088, intron 1 of 22)	intron (NM_001174088, intron 1 of 22)	66308	NM_001174088	8202	Hs.592142	NM_006534	HPRD:03570	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_27687	chr13	30996457	30996660	+	17.50607	NA	promoter-TSS (NR_125771)	promoter-TSS (NR_125771)	-177	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
19-PTNLD28-TUMOR_peak_4089	chr1	64950326	64950695	+	17.50607	NA	intron (NM_020925, intron 1 of 26)	L1MB3|LINE|L1	14034	NM_020925	57685	Hs.443891	NM_020925	HPRD:13874	CACHD1	-	cache domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_21769	chr11	122925116	122925281	+	17.50315	NA	Intergenic	Intergenic	7845	NM_006597	3312	Hs.180414	NM_006597	HPRD:07205	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock 70kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_46939	chr19	6862824	6863038	+	17.50315	NA	Intergenic	Intergenic	-24629	NM_001256254	2015	Hs.2375	NM_001974	HPRD:02733	EMR1	TM7LN3	egf-like module containing, mucin-like, hormone receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_11911	chr10	7342336	7342607	+	17.50315	NA	intron (NM_001018039, intron 4 of 20)	intron (NM_001018039, intron 4 of 20)	108832	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_83183	chr5	149682428	149682686	+	17.50315	NA	promoter-TSS (NM_001012301)	promoter-TSS (NM_001012301)	-32	NM_001012301	340075	Hs.591252	NM_001012301	HPRD:16510	ARSI	SPG66	arylsulfatase family, member I	protein-coding
19-PTNLD28-TUMOR_peak_103469	chr9	67050681	67050809	+	17.50315	NA	Intergenic	AluSc|SINE|Alu	-18673	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	ncRNA
19-PTNLD28-TUMOR_peak_1285	chr1	20834480	20834775	+	17.49484	NA	promoter-TSS (NM_024544)	promoter-TSS (NM_024544)	47	NM_024544	79594	Hs.10101	NM_024544	HPRD:07799	MUL1	C1orf166|GIDE|MAPL|MULAN|RNF218	mitochondrial E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_6337	chr1	145713678	145713890	+	17.49484	NA	intron (NR_103845, intron 1 of 3)	intron (NR_103845, intron 1 of 3)	1855	NR_103845	11126	Hs.488237	NM_007053	HPRD:06833	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
19-PTNLD28-TUMOR_peak_38987	chr16	81737203	81737368	+	17.49484	NA	intron (NM_198390, intron 17 of 20)	intron (NM_198390, intron 17 of 20)	38326	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
19-PTNLD28-TUMOR_peak_107075	chrUn_gl000217	31571	31700	+	17.49484	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_32900	chr15	32322434	32322618	+	17.49484	NA	promoter-TSS (NR_046324)	promoter-TSS (NR_046324)	-160	NM_000746	1139	Hs.511772	NM_000746		CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor, nicotinic, alpha 7 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_71521	chr3	146255485	146255635	+	17.49455	NA	intron (NM_021105, intron 1 of 8)	AluJb|SINE|Alu	7068	NM_021105	5359	Hs.130759	NM_021105	HPRD:08855	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
19-PTNLD28-TUMOR_peak_94453	chr7	101377214	101377365	+	17.49455	NA	Intergenic	Intergenic	-81895	NM_001913	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_1358	chr1	22223272	22223579	+	17.49455	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	40365	NM_001291860	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_109855	chrX	152552942	152553190	+	17.49455	NA	Intergenic	Intergenic	-46547	NM_001080485	10838	Hs.348963	NM_020636	ENSG00000063587	ZNF275	-	zinc finger protein 275	protein-coding
19-PTNLD28-TUMOR_peak_574	chr1	9175079	9175240	+	17.48870	NA	intron (NM_024980, intron 1 of 3)	intron (NM_024980, intron 1 of 3)	14070	NM_024980	80045	Hs.632367	NM_024980		GPR157	-	G protein-coupled receptor 157	protein-coding
19-PTNLD28-TUMOR_peak_86176	chr6	26597348	26597616	+	17.48682	NA	intron (NM_013375, intron 1 of 2)	CpG	311	NM_013375	29777	Hs.254406	NM_013375	HPRD:16469	ABT1	hABT1	activator of basal transcription 1	protein-coding
19-PTNLD28-TUMOR_peak_32967	chr15	33492655	33492802	+	17.48682	NA	Intergenic	Intergenic	-5794	NM_001277313	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_62626	chr20	62495299	62495831	+	17.47970	NA	Intergenic	MIR|SINE|MIR	-1016	NM_001243895	7165	Hs.473296	NM_003288	HPRD:11947	TPD52L2	D54	tumor protein D52-like 2	protein-coding
19-PTNLD28-TUMOR_peak_46738	chr19	3557549	3557789	+	17.47028	NA	promoter-TSS (NM_001287529)	promoter-TSS (NM_001287529)	-87	NM_001287529	126321	Hs.656901	NM_021731	HPRD:12704	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_51291	chr2	16059909	16060486	+	17.46968	NA	promoter-TSS (NR_125783)	promoter-TSS (NR_125783)	-324	NR_125783	103752554	Hs.269571	NR_125783		MYCNUT	MYCNUN|lncUSMycN	MYCN upstream transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_96024	chr7	142957008	142957135	+	17.46837	NA	Intergenic	L1MD3|LINE|L1	-3451	NM_001143679	373156	Hs.390667	NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_38309	chr16	67233465	67233673	+	17.46734	NA	TTS (NM_001950)	TTS (NM_001950)	541	NM_024712	79767	Hs.377416	NM_024712	HPRD:12104	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
19-PTNLD28-TUMOR_peak_59487	chr20	2113126	2113433	+	17.46607	NA	intron (NM_080836, intron 3 of 3)	intron (NM_080836, intron 3 of 3)	30751	NM_080836	140901	Hs.100057	NM_080836	HPRD:11612	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
19-PTNLD28-TUMOR_peak_21699	chr11	121505662	121505802	+	17.46607	NA	Intergenic	MamRep605|Unknown|Unknown	182820	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_102793	chr9	34560314	34560453	+	17.46607	NA	intron (NM_001207011, intron 4 of 9)	intron (NM_001207011, intron 4 of 9)	-7627	NR_024369	415056	Hs.734229	NR_024369		CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8656	chr1	181888124	181888534	+	17.46607	NA	Intergenic	Intergenic	142518	NM_001009992	127665	Hs.684328	NM_001009992	HPRD:18361	ZNF648	-	zinc finger protein 648	protein-coding
19-PTNLD28-TUMOR_peak_26721	chr12	121533849	121534012	+	17.46607	NA	Intergenic	Intergenic	-36692	NR_033953	5027	Hs.729169	NM_002562	HPRD:03977	P2RX7	P2X7	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding
19-PTNLD28-TUMOR_peak_83410	chr5	154230129	154230301	+	17.46607	NA	promoter-TSS (NM_032385)	promoter-TSS (NM_032385)	-2	NM_032385	10826	Hs.519694	NM_016348	HPRD:12832	FAXDC2	C5orf4	fatty acid hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_47591	chr19	14153912	14154057	+	17.46607	NA	intron (NM_004843, intron 6 of 13)	intron (NM_004843, intron 6 of 13)	11432	NM_004843	9466	Hs.132781	NM_004843	HPRD:09247	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_57577	chr2	196093414	196093792	+	17.46607	NA	Intergenic	L1PA3|LINE|L1	-427929	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_18496	chr11	47875448	47875613	+	17.46607	NA	Intergenic	AluSg4|SINE|Alu	-5473	NM_015231	23279	Hs.744107	NM_015231	HPRD:16254	NUP160	-	nucleoporin 160kDa	protein-coding
19-PTNLD28-TUMOR_peak_68225	chr3	50434046	50434247	+	17.46607	NA	intron (NM_001005505, intron 3 of 37)	intron (NM_001005505, intron 3 of 37)	31381	NR_111914	11068	Hs.149443	NM_007022	HPRD:06143	CYB561D2	101F6|TSP10|XXcos-LUCA11.4	cytochrome b561 family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_68861	chr3	66840120	66840508	+	17.46607	NA	Intergenic	Intergenic	-208413	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_48171	chr19	19738437	19738839	+	17.46208	NA	intron (NM_004720, intron 1 of 2)	CpG	401	NM_004720	9170	Hs.122575	NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_7844	chr1	164614259	164614462	+	17.45404	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	85763	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_5709	chr1	115632512	115632784	+	17.45404	NA	promoter-TSS (NM_005725)	promoter-TSS (NM_005725)	-527	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_7372	chr1	156818641	156818808	+	17.45404	NA	exon (NM_014215, exon 7 of 22)	exon (NM_014215, exon 7 of 22)	9988	NM_014215	3645	Hs.248138	NM_014215	HPRD:00976	INSRR	IRR	insulin receptor-related receptor	protein-coding
19-PTNLD28-TUMOR_peak_96831	chr8	149057	149187	+	17.45404	NA	Intergenic	AluSz|SINE|Alu	-32098	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_24377	chr12	52973996	52974163	+	17.45404	NA	Intergenic	Intergenic	-6470	NM_175053	121391	Hs.660125	NM_175053	HPRD:10504	KRT74	ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
19-PTNLD28-TUMOR_peak_13841	chr10	63664570	63664757	+	17.45404	NA	intron (NM_032199, intron 2 of 9)	intron (NM_032199, intron 2 of 9)	3650	NM_032199	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_21735	chr11	122516673	122516844	+	17.45404	NA	Intergenic	Intergenic	-9640	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_25141	chr12	68313295	68313702	+	17.45327	NA	Intergenic	Intergenic	-9517	NR_120456	101927922	Hs.450769	NR_120456		LINC01479	-	long intergenic non-protein coding RNA 1479	ncRNA
19-PTNLD28-TUMOR_peak_16442	chr11	178201	178417	+	17.45327	NA	Intergenic	MER21C|LTR|ERVL	-14771	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	secretoglobin, family 1C, member 1-like	protein-coding
19-PTNLD28-TUMOR_peak_42200	chr17	48178296	48179200	+	17.45327	NA	intron (NM_001199898, intron 3 of 11)	MIR|SINE|MIR	5689	NM_001199899	5164	Hs.256667	NM_002611	HPRD:03955	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase, isozyme 2	protein-coding
19-PTNLD28-TUMOR_peak_45321	chr18	37033904	37034239	+	17.44290	NA	intron (NR_024391, intron 3 of 3)	MLT1J2-int|LTR|ERVL-MaLR	-222614	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_102794	chr9	34578218	34578479	+	17.44290	NA	intron (NM_001842, intron 1 of 8)	intron (NM_001842, intron 1 of 8)	10338	NR_024369	415056	Hs.734229	NR_024369		CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35604	chr16	377268	377588	+	17.44290	NA	intron (NM_003502, intron 2 of 10)	intron (NM_003502, intron 2 of 10)	25248	NM_003502	8312	Hs.592082	NM_003502	HPRD:04819	AXIN1	AXIN|PPP1R49	axin 1	protein-coding
19-PTNLD28-TUMOR_peak_109549	chrX	134156430	134156876	+	17.44290	NA	promoter-TSS (NM_001078173)	promoter-TSS (NM_001078173)	-87	NM_001078173	441518	Hs.378813	NM_001078173	ENSG00000212747	FAM127C	CXX1c|MAR8B	family with sequence similarity 127, member C	protein-coding
19-PTNLD28-TUMOR_peak_76747	chr4	119321637	119321846	+	17.44290	NA	Intergenic	Intergenic	-47819	NM_003619	8492	Hs.445857	NM_003619	HPRD:05989	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine, 12 (neurotrypsin, motopsin)	protein-coding
19-PTNLD28-TUMOR_peak_39148	chr16	85148642	85149012	+	17.44290	NA	Intergenic	Intergenic	-2713	NM_198491	339145	Hs.125713	NM_198491	HPRD:13488	FAM92B	-	family with sequence similarity 92, member B	protein-coding
19-PTNLD28-TUMOR_peak_69765	chr3	111721306	111721516	+	17.44202	NA	intron (NM_001008272, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	3404	NM_001008273	29114	Hs.169330	NM_013259	HPRD:12136	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
19-PTNLD28-TUMOR_peak_77741	chr4	155798333	155798789	+	17.43690	NA	Intergenic	LTR18B|LTR|ERVL	95904	NM_001277173	166863	Hs.133095	NM_144979	HPRD:14517	RBM46	CT68	RNA binding motif protein 46	protein-coding
19-PTNLD28-TUMOR_peak_104551	chr9	93970321	93970651	+	17.43690	NA	Intergenic	Intergenic	-133072	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
19-PTNLD28-TUMOR_peak_27214	chr12	131686563	131686950	+	17.43690	NA	intron (NR_026670, intron 1 of 4)	MLT1I|LTR|ERVL-MaLR	37200	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_89229	chr6	116834631	116834999	+	17.43690	NA	intron (NM_153711, intron 1 of 1)	intron (NM_153711, intron 1 of 1)	2007	NM_153711	254228	Hs.660142	NM_153711		FAM26E	C6orf188|dJ493F7.3	family with sequence similarity 26, member E	protein-coding
19-PTNLD28-TUMOR_peak_49273	chr19	44191204	44191537	+	17.43690	NA	Intergenic	Intergenic	-16872	NM_001301037	5329	Hs.466871	NM_002659	HPRD:01421	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
19-PTNLD28-TUMOR_peak_101089	chr8	133876206	133876429	+	17.43690	NA	Intergenic	Intergenic	-2888	NM_003235	7038	Hs.654591	NM_003235	HPRD:01782	TG	AITD3|TGN	thyroglobulin	protein-coding
19-PTNLD28-TUMOR_peak_82057	chr5	131007981	131008352	+	17.43690	NA	exon (NM_133372, exon 14 of 18)	exon (NM_133372, exon 14 of 18)	-37237	NM_001164390	51735	Hs.483329	NM_016340	HPRD:11483	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
19-PTNLD28-TUMOR_peak_3557	chr1	53715378	53715749	+	17.43690	NA	intron (NM_004631, intron 17 of 18)	L2c|LINE|L2	-11281	NM_002370	4116	Hs.421576	NM_002370	HPRD:04005	MAGOH	MAGOH1|MAGOHA	mago-nashi homolog, proliferation-associated (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_85383	chr6	11851600	11851965	+	17.43690	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-72502	NM_032744	84830	Hs.126409	NM_032744	HPRD:12836	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
19-PTNLD28-TUMOR_peak_91909	chr7	32708860	32709131	+	17.43690	NA	intron (NR_036680, intron 5 of 16)	MER76|LTR|ERVL	49785	NR_036680	100129460	Hs.633705	NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_108468	chrX	57147621	57148136	+	17.43690	NA	5' UTR (NM_001282461, exon 1 of 3)	5' UTR (NM_001282461, exon 1 of 3)	101	NM_001006682	474343	Hs.460717	NM_001006681	HPRD:18662	SPIN2B	SPIN-2|SPIN-2B|SPIN2_duplicate|dJ323P24.2	spindlin family, member 2B	protein-coding
19-PTNLD28-TUMOR_peak_109857	chrX	152559037	152559305	+	17.43690	NA	Intergenic	L1MB5|LINE|L1	-40442	NM_001080485	10838	Hs.348963	NM_020636	ENSG00000063587	ZNF275	-	zinc finger protein 275	protein-coding
19-PTNLD28-TUMOR_peak_38114	chr16	58231933	58232160	+	17.43690	NA	promoter-TSS (NM_001896)	promoter-TSS (NM_001896)	-264	NM_001896	1459	Hs.82201	NM_001896	HPRD:00279	CSNK2A2	CK2A2|CSNK2A1	casein kinase 2, alpha prime polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_21789	chr11	123132280	123132464	+	17.43690	NA	Intergenic	Intergenic	-66365	NM_024769	79827	Hs.591949	NM_024769	HPRD:16513	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR-like membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_35954	chr16	4069363	4069756	+	17.43690	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	-69114	NR_120311	102724927	Hs.364739	NR_120311		LOC102724927	-	uncharacterized LOC102724927	ncRNA
19-PTNLD28-TUMOR_peak_38568	chr16	70730994	70731338	+	17.43495	NA	intron (NM_018052, intron 15 of 18)	intron (NM_018052, intron 15 of 18)	-11212	NM_138383	92154	Hs.432387	NM_138383	HPRD:14289	MTSS1L	ABBA-1	metastasis suppressor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_76531	chr4	108909077	108909368	+	17.43495	NA	Intergenic	LTR10C|LTR|ERV1	-1648	NM_001184705	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_103523	chr9	68408553	68408679	+	17.43191	NA	Intergenic	CpG	45759	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_87699	chr6	44425475	44425676	+	17.42803	NA	Intergenic	Intergenic	22197	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_42432	chr17	54671113	54671503	+	17.42803	NA	5' UTR (NM_005450, exon 1 of 1)	5' UTR (NM_005450, exon 1 of 1)	248	NM_005450	9241	Hs.248201	NM_005450	HPRD:04291	NOG	SYM1|SYNS1	noggin	protein-coding
19-PTNLD28-TUMOR_peak_2	chr1	11191	11400	+	17.42707	NA	promoter-TSS (NR_046018)	promoter-TSS (NR_046018)	-579	NR_046018	100287102	Hs.618434	NR_046018		DDX11L1	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1	pseudo
19-PTNLD28-TUMOR_peak_76379	chr4	100692083	100692239	+	17.42540	NA	Intergenic	L1PA3|LINE|L1	-45820	NM_014395	27071	Hs.436271	NM_014395	HPRD:05773	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides	protein-coding
19-PTNLD28-TUMOR_peak_107465	chrX	7416124	7416518	+	17.42540	NA	Intergenic	MER50B|LTR|ERV1	278849	NM_000351	412	Hs.522578	NM_000351	HPRD:02389	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase (microsomal), isozyme S	protein-coding
19-PTNLD28-TUMOR_peak_43381	chr17	73110249	73110648	+	17.42540	NA	intron (NM_024585, intron 2 of 2)	intron (NM_024585, intron 2 of 2)	4366	NM_024585	79637	Hs.413047	NM_024585	HPRD:08649	ARMC7	-	armadillo repeat containing 7	protein-coding
19-PTNLD28-TUMOR_peak_88677	chr6	88639640	88639841	+	17.42540	NA	Intergenic	Intergenic	-117767	NM_030960	81833	Hs.161241	NM_030960	HPRD:15419	SPACA1	SAMP32	sperm acrosome associated 1	protein-coding
19-PTNLD28-TUMOR_peak_76922	chr4	124220465	124220769	+	17.42540	NA	intron (NM_145207, intron 15 of 15)	intron (NM_145207, intron 15 of 15)	-97333	NM_199327	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_25063	chr12	66352290	66352462	+	17.42540	NA	intron (NM_003483, intron 4 of 4)	intron (NM_003483, intron 4 of 4)	65130	NR_106722	102464827		NR_106722		MIR6074	hsa-mir-6074	microRNA 6074	ncRNA
19-PTNLD28-TUMOR_peak_67802	chr3	44524192	44524542	+	17.42540	NA	Intergenic	MER70C|LTR|ERVL	-5205	NM_181489	353274	Hs.250481	NM_181489	HPRD:11719	ZNF445	ZKSCAN15|ZNF168|ZSCAN47	zinc finger protein 445	protein-coding
19-PTNLD28-TUMOR_peak_107362	chrX	2022348	2022497	+	17.42540	NA	Intergenic	Intergenic	288396	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_110098	chrY	1972348	1972497	+	17.42540	NA	Intergenic	Intergenic	288396	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_71357	chr3	141276953	141277102	+	17.42540	NA	intron (NM_006506, intron 7 of 23)	MIRc|SINE|MIR	71101	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_60692	chr20	33796317	33796437	+	17.42540	NA	Intergenic	Intergenic	-18162	NM_006690	10893	Hs.715494	NM_006690	HPRD:05338	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_46667	chr19	2507218	2507476	+	17.42540	NA	Intergenic	MIRc|SINE|MIR	31224	NM_015675	4616	Hs.110571	NM_015675	HPRD:05382	GADD45B	GADD45BETA|MYD118	growth arrest and DNA-damage-inducible, beta	protein-coding
19-PTNLD28-TUMOR_peak_69678	chr3	110159401	110159534	+	17.42540	NA	Intergenic	L1PA2|LINE|L1	629339	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63419	chr21	37882370	37882532	+	17.42540	NA	intron (NM_001146077, intron 2 of 2)	intron (NM_001146077, intron 2 of 2)	-30063	NM_001146079	23562	Hs.660278	NM_012130	HPRD:05727	CLDN14	DFNB29	claudin 14	protein-coding
19-PTNLD28-TUMOR_peak_49218	chr19	42681205	42681380	+	17.42540	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	40652	NM_001270615	162989	Hs.515432	NM_133328	HPRD:10868	DEDD2	FLAME-3	death effector domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_93859	chr7	89950424	89950644	+	17.42540	NA	Intergenic	CpG	-14003	NR_110085	101927446	Hs.734999	NR_110085	ENSG00000105793	LOC101927446	-	uncharacterized LOC101927446	ncRNA
19-PTNLD28-TUMOR_peak_20635	chr11	94356432	94356595	+	17.42540	NA	Intergenic	Intergenic	56039	NM_152431	143689	Hs.660188	NM_152431	HPRD:11435	PIWIL4	HIWI2|MIWI2	piwi-like RNA-mediated gene silencing 4	protein-coding
19-PTNLD28-TUMOR_peak_20457	chr11	86430889	86431112	+	17.42540	NA	Intergenic	Intergenic	-47322	NM_001161586	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_18363	chr11	45894396	45894572	+	17.42540	NA	intron (NM_001127457, intron 11 of 11)	intron (NM_001127457, intron 11 of 11)	-12563	NM_005456	9479	Hs.234249	NM_005456	HPRD:05223	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22458	chr12	1968844	1969069	+	17.42540	NA	intron (NM_172364, intron 19 of 37)	intron (NM_172364, intron 19 of 37)	39523	NM_001039029	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine-rich repeats and transmembrane domains 2	protein-coding
19-PTNLD28-TUMOR_peak_49029	chr19	40283749	40284117	+	17.42540	NA	Intergenic	Intergenic	16699	NM_001143832	342900	Hs.451638	NM_001143832	ENSG00000213921	LEUTX	-	leucine twenty homeobox	protein-coding
19-PTNLD28-TUMOR_peak_22202	chr11	130595939	130596398	+	17.42540	NA	Intergenic	Intergenic	53317	NM_001271983	283171	Hs.376151	NM_001271983	HPRD:08250	C11orf44	-	chromosome 11 open reading frame 44	protein-coding
19-PTNLD28-TUMOR_peak_9187	chr1	201237118	201237353	+	17.42049	NA	Intergenic	L1MB3|LINE|L1	-15345	NM_001005337	5317	Hs.497350	NM_000299	HPRD:03579	PKP1	B6P	plakophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_97528	chr8	21775949	21776316	+	17.41302	NA	Intergenic	Intergenic	-1048	NM_015024	23039	Hs.172685	NM_015024	HPRD:05846	XPO7	EXP7|RANBP16	exportin 7	protein-coding
19-PTNLD28-TUMOR_peak_40362	chr17	17108713	17108902	+	17.40563	NA	intron (NM_178836, intron 1 of 1)	CpG	839	NM_178836	201164	Hs.729079	NM_178836	HPRD:14126	PLD6	ZUC	phospholipase D family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_21947	chr11	126230622	126230754	+	17.40563	NA	intron (NM_006278, intron 1 of 10)	L2a|LINE|L2	4899	NM_006278	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_56603	chr2	161086244	161086413	+	17.40439	NA	Intergenic	Intergenic	-29504	NM_001282388	3694	Hs.470399	NM_000888	HPRD:00947	ITGB6	-	integrin, beta 6	protein-coding
19-PTNLD28-TUMOR_peak_41164	chr17	35278054	35278241	+	17.39987	NA	Intergenic	Intergenic	-16625	NM_005568	3975	Hs.443727	NM_005568	HPRD:09067	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_74893	chr4	30771752	30772183	+	17.39693	NA	intron (NM_032457, intron 1 of 2)	intron (NM_032457, intron 1 of 2)	49930	NM_032457	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_85367	chr6	11655926	11656047	+	17.39693	NA	Intergenic	Intergenic	117526	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_32627	chr15	25726534	25726944	+	17.39693	NA	Intergenic	Intergenic	-42564	NM_130839	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_43987	chr17	79545033	79545340	+	17.38960	NA	intron (NM_017921, intron 12 of 16)	intron (NM_017921, intron 12 of 16)	-25757	NM_025161	80233	Hs.313905	NM_025161	HPRD:07982	C17orf70	FAAP100	chromosome 17 open reading frame 70	protein-coding
19-PTNLD28-TUMOR_peak_98628	chr8	48437490	48437850	+	17.38960	NA	intron (NR_104581, intron 6 of 16)	intron (NR_104581, intron 6 of 16)	213056	NM_005195	1052	Hs.440829	NM_005195		CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
19-PTNLD28-TUMOR_peak_68277	chr3	51572596	51572980	+	17.38960	NA	Intergenic	CpG	-2808	NM_015106	23132	Hs.105399	NM_015106	HPRD:10018	RAD54L2	ARIP4|HSPC325|SRISNF2L	RAD54-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_7396	chr1	157133559	157133758	+	17.38960	NA	Intergenic	Intergenic	-25275	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_87933	chr6	52226413	52226583	+	17.38960	NA	promoter-TSS (NM_133367)	promoter-TSS (NM_133367)	-428	NM_133367	85315	Hs.239388	NM_133367	HPRD:07415	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member VIII	protein-coding
19-PTNLD28-TUMOR_peak_98038	chr8	30390049	30390277	+	17.38871	NA	intron (NM_001008712, intron 5 of 6)	intron (NM_001008712, intron 5 of 6)	-105954	NM_001206847	100507341	Hs.659493	NM_001206847	ENSG00000253457	SMIM18	-	small integral membrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_86224	chr6	27342294	27342578	+	17.38871	NA	intron (NR_024553, intron 1 of 4)	intron (NR_024553, intron 1 of 4)	717	NR_024553	7754	Hs.8198	NR_002722	ENSG00000204789	ZNF204P	ZNF184-Lp|ZNF204|ZNF315P|b24o18.1	zinc finger protein 204, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88057	chr6	53793873	53794929	+	17.38733	NA	Intergenic	Intergenic	-69287	NR_046832	100874282	Hs.571169	NR_046832	ENSG00000236996	MLIP-IT1	-	MLIP intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_25875	chr12	103355936	103356093	+	17.38054	NA	Intergenic	Intergenic	4562	NM_004316	429	Hs.703025	NM_004316	HPRD:00011	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_58552	chr2	221758235	221758421	+	17.38054	NA	Intergenic	Intergenic	678682	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_3373	chr1	48573229	48573513	+	17.38054	NA	intron (NR_026749, intron 9 of 9)	THE1D|LTR|ERVL-MaLR	74729	NR_026749	391037	Hs.585393	NR_026749		SKINTL	BTN12|SKINT1|SKINTP	Skint-like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88005	chr6	53057806	53057978	+	17.38054	NA	Intergenic	Intergenic	-44268	NM_003643	8521	Hs.28346	NM_003643	HPRD:04757	GCM1	GCMA|hGCMa	glial cells missing homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_41586	chr17	41158684	41159083	+	17.38020	NA	5' UTR (NM_005533, exon 1 of 7)	5' UTR (NM_005533, exon 1 of 7)	141	NM_005533	3430	Hs.632258	NM_005533	HPRD:02844	IFI35	IFP35	interferon-induced protein 35	protein-coding
19-PTNLD28-TUMOR_peak_96003	chr7	142613779	142613993	+	17.38020	NA	intron (NM_019841, intron 8 of 14)	intron (NM_019841, intron 8 of 14)	16934	NM_019841	56302	Hs.283369	NM_019841	HPRD:05981	TRPV5	CAT2|ECAC1|OTRPC3	transient receptor potential cation channel, subfamily V, member 5	protein-coding
19-PTNLD28-TUMOR_peak_24659	chr12	56448524	56448684	+	17.38020	NA	Intergenic	AluSc8|SINE|Alu	12918	NM_001029	6231	Hs.447562	NM_001029	HPRD:04743	RPS26	DBA10|S26	ribosomal protein S26	protein-coding
19-PTNLD28-TUMOR_peak_46896	chr19	6218688	6218857	+	17.38020	NA	intron (NM_005934, intron 6 of 11)	intron (NM_005934, intron 6 of 11)	61187	NM_005934	4298	Hs.10095	NM_005934		MLLT1	ENL|LTG19|YEATS1	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	protein-coding
19-PTNLD28-TUMOR_peak_31536	chr14	81929003	81929464	+	17.38020	NA	Intergenic	SVA_B|Other|Other	-12732	NR_109999	100506700	Hs.116304	NR_109999	ENSG00000258675	LOC100506700	-	uncharacterized LOC100506700	ncRNA
19-PTNLD28-TUMOR_peak_49638	chr19	48279840	48280080	+	17.37632	NA	Intergenic	L2a|LINE|L2	-1882	NM_003009	6415	Hs.631549	NM_003009	HPRD:08377	SEPW1	selW	selenoprotein W, 1	protein-coding
19-PTNLD28-TUMOR_peak_36056	chr16	4993205	4993549	+	17.36426	NA	Intergenic	Intergenic	-6241	NM_002705	5493	Hs.192233	NM_002705	HPRD:04187	PPL	-	periplakin	protein-coding
19-PTNLD28-TUMOR_peak_30738	chr14	64360428	64360768	+	17.36254	NA	intron (NM_182914, intron 1 of 115)	intron (NM_182914, intron 1 of 115)	40915	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_49951	chr19	50860406	50860637	+	17.36254	NA	Intergenic	Intergenic	8410	NM_004851	9476	Hs.512843	NM_004851	HPRD:07064	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
19-PTNLD28-TUMOR_peak_71746	chr3	151157297	151157646	+	17.36039	NA	intron (NM_178822, intron 5 of 5)	intron (NM_178822, intron 5 of 5)	1107	NM_001178145	285313	Hs.58561	NM_178822		IGSF10	CMF608	immunoglobulin superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_81628	chr5	113391022	113391358	+	17.36039	NA	Intergenic	CpG	-306826	NM_021614	3781	Hs.98280	NM_021614	HPRD:09323	KCNN2	KCa2.2|SK2|SKCA2|SKCa 2|hSK2	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
19-PTNLD28-TUMOR_peak_109854	chrX	152526019	152526201	+	17.36039	NA	Intergenic	Intergenic	-39994	NM_004988	4100	Hs.72879	NM_004988	HPRD:02059	MAGEA1	CT1.1|MAGE1	melanoma antigen family A, 1 (directs expression of antigen MZ2-E)	protein-coding
19-PTNLD28-TUMOR_peak_15502	chr10	106337053	106337223	+	17.36039	NA	Intergenic	Intergenic	-63721	NM_014978	22986	Hs.671950	NM_014978	HPRD:12100	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_99018	chr8	66886136	66886270	+	17.36039	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	-47588	NM_033105	85479	Hs.491885	NM_033105	HPRD:07474	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
19-PTNLD28-TUMOR_peak_75669	chr4	74964736	74965164	+	17.36039	NA	promoter-TSS (NM_002089)	promoter-TSS (NM_002089)	47	NM_002089	2920	Hs.75765	NM_002089	HPRD:00741	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	chemokine (C-X-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_72235	chr3	169564687	169564937	+	17.36039	NA	intron (NM_001277127, intron 8 of 8)	intron (NM_001277127, intron 8 of 8)	22911	NM_001277128	79782	Hs.411295	NM_024727	HPRD:08023	LRRC31	HEL-S-293	leucine rich repeat containing 31	protein-coding
19-PTNLD28-TUMOR_peak_37864	chr16	53807190	53807377	+	17.36039	NA	intron (NM_001080432, intron 1 of 8)	intron (NM_001080432, intron 1 of 8)	69408	NM_001080432	79068	Hs.528833	NM_001080432		FTO	ALKBH9	fat mass and obesity associated	protein-coding
19-PTNLD28-TUMOR_peak_13552	chr10	50637413	50637807	+	17.36039	NA	Intergenic	Intergenic	-33548	NM_001276451	644168	Hs.534530	NM_001080520		DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
19-PTNLD28-TUMOR_peak_75140	chr4	48175530	48175941	+	17.36039	NA	intron (NM_003215, intron 3 of 17)	intron (NM_003215, intron 3 of 17)	-39462	NM_003328	7294	Hs.479669	NM_003328	HPRD:02505	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_33398	chr15	44975577	44975928	+	17.36039	NA	Intergenic	L1PA7|LINE|L1	-6666	NM_001145112	197135	Hs.11594	NM_001145112	ENSG00000229474	PATL2	Pat1a|hPat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_108737	chrX	71996552	71996785	+	17.36039	NA	Intergenic	Intergenic	5816	NR_120499	100129407	Hs.512473	NR_034116	ENSG00000204119	LINC00684	DMRTC1-AS1	long intergenic non-protein coding RNA 684	ncRNA
19-PTNLD28-TUMOR_peak_98319	chr8	39122393	39122636	+	17.36039	NA	intron (NM_145004, intron 19 of 24)	L1MA5A|LINE|L1	-49668	NR_001448	255926	Hs.369765	NM_001040073	ENSG00000196115	ADAM5	ADAM5P|TMDCII	ADAM metallopeptidase domain 5, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_42848	chr17	61926203	61926384	+	17.35758	NA	Intergenic	CpG	-5942	NM_001098426	6603	Hs.250581	NM_003077	HPRD:03439	SMARCD2	BAF60B|CRACD2|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
19-PTNLD28-TUMOR_peak_107451	chrX	7049809	7050041	+	17.35758	NA	intron (NM_001135565, intron 1 of 4)	intron (NM_001135565, intron 1 of 4)	-15976	NR_039924	100616467		NR_039924	miRBase:MI0017408	MIR4767	-	microRNA 4767	ncRNA
19-PTNLD28-TUMOR_peak_994	chr1	15736314	15736625	+	17.35758	NA	promoter-TSS (NM_024329)	promoter-TSS (NM_024329)	78	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_29558	chr14	24601611	24601760	+	17.35463	NA	exon (NM_203402, exon 2 of 2)	exon (NM_203402, exon 2 of 2)	1010	NM_203402	161247	Hs.128060	NM_203402	HPRD:17312	FITM1	FIT1	fat storage-inducing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_24132	chr12	49737119	49737349	+	17.34958	NA	Intergenic	Intergenic	-3807	NM_024902	79962	Hs.659300	NM_024902	HPRD:08580	DNAJC22	wus	DnaJ (Hsp40) homolog, subfamily C, member 22	protein-coding
19-PTNLD28-TUMOR_peak_4087	chr1	64942380	64942598	+	17.33931	NA	intron (NM_020925, intron 1 of 26)	intron (NM_020925, intron 1 of 26)	6013	NM_020925	57685	Hs.443891	NM_020925	HPRD:13874	CACHD1	-	cache domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70836	chr3	131310344	131310491	+	17.33931	NA	intron (NM_001289112, intron 7 of 15)	intron (NM_001289112, intron 7 of 15)	-88557	NM_007208	11222	Hs.205163	NM_007208	HPRD:06175	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_21187	chr11	112323727	112323934	+	17.33931	NA	Intergenic	Intergenic	-29125	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
19-PTNLD28-TUMOR_peak_41012	chr17	31611160	31611352	+	17.33931	NA	intron (NM_001094, intron 1 of 9)	MamRep434|DNA|TcMar-Tigger	8750	NM_183377	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_9802	chr1	207155564	207155714	+	17.33931	NA	Intergenic	Intergenic	-11669	NM_001122979	83953	Hs.145519	NM_032029	HPRD:12020	FCAMR	CD351|FCA/MR	Fc receptor, IgA, IgM, high affinity	protein-coding
19-PTNLD28-TUMOR_peak_105777	chr9	122318410	122318567	+	17.33931	NA	Intergenic	Intergenic	-186749	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_56433	chr2	157149463	157149601	+	17.33931	NA	Intergenic	SVA_F|Other|Other	-38089	NR_110250	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_34419	chr15	73806222	73806426	+	17.33931	NA	intron (NM_001042367, intron 2 of 5)	L1PA2|LINE|L1	55560	NR_103844	101241892	Hs.656678	NR_103844		NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77948	chr4	167065857	167066052	+	17.33931	NA	Intergenic	Intergenic	271544	NM_012464	7092	Hs.106513	NM_012464	HPRD:07074	TLL1	ASD6|TLL	tolloid-like 1	protein-coding
19-PTNLD28-TUMOR_peak_58237	chr2	214276724	214276900	+	17.33931	NA	intron (NR_047659, intron 11 of 17)	LTR10F|LTR|ERV1	127709	NR_047659	79582	Hs.743365	NM_024532	HPRD:18089	SPAG16	PF20|WDR29	sperm associated antigen 16	protein-coding
19-PTNLD28-TUMOR_peak_16248	chr10	130653351	130653503	+	17.33931	NA	Intergenic	Intergenic	569213	NR_120619	101927381	Hs.523342	NR_120619		LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
19-PTNLD28-TUMOR_peak_93540	chr7	76864720	76864836	+	17.33931	NA	intron (NM_020879, intron 2 of 18)	L2b|LINE|L2	-35628	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_12283	chr10	20198319	20198683	+	17.33931	NA	intron (NM_001282736, intron 1 of 12)	intron (NM_001282736, intron 1 of 12)	93129	NM_032812	84898	Hs.99472	NM_032812	HPRD:08440	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_57922	chr2	204624432	204624656	+	17.33931	NA	Intergenic	L1MA3|LINE|L1	53346	NM_001243077	940	Hs.443123	NM_006139	HPRD:01727	CD28	Tp44	CD28 molecule	protein-coding
19-PTNLD28-TUMOR_peak_8150	chr1	171255415	171255722	+	17.33931	NA	TTS (NM_002021)	TTS (NM_002021)	-27918	NM_002022	2329	Hs.386502	NM_002022	HPRD:00632	FMO4	FMO2	flavin containing monooxygenase 4	protein-coding
19-PTNLD28-TUMOR_peak_58142	chr2	210338730	210338852	+	17.33931	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	50020	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_45216	chr18	33329718	33329910	+	17.33931	NA	Intergenic	MER41B|LTR|ERV1	95281	NM_020474	2589	Hs.514806	NM_020474	HPRD:03781	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_29396	chr14	21851618	21851854	+	17.33931	NA	intron (NM_007192, intron 1 of 25)	CpG	689	NM_007192	11198	Hs.213724	NM_007192	HPRD:16088	SUPT16H	CDC68|FACTP140|SPT16/CDC68	suppressor of Ty 16 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_12640	chr10	29430073	29430245	+	17.33931	NA	Intergenic	Intergenic	-147831	NM_032517	84569	Hs.558572	NM_032517	HPRD:14336	LYZL1	KAAG648|LYC2|PRO1278|bA534G20.1	lysozyme-like 1	protein-coding
19-PTNLD28-TUMOR_peak_99444	chr8	88240871	88241040	+	17.33931	NA	intron (NM_173538, intron 5 of 10)	L1PA3|LINE|L1	362279	NM_173538	168975	Hs.246284	NM_173538	HPRD:08192	CNBD1	-	cyclic nucleotide binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74454	chr4	9732519	9733092	+	17.33757	NA	Intergenic	Intergenic	-50453	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_22208	chr11	130652285	130652446	+	17.33757	NA	Intergenic	Intergenic	79640	NR_125383	100507431	Hs.375101	NR_125383		LOC100507431	-	uncharacterized LOC100507431	ncRNA
19-PTNLD28-TUMOR_peak_28748	chr13	97656818	97657068	+	17.33757	NA	Intergenic	MER45B|DNA|hAT-Tip100	-10339	NM_080818	27199	Hs.352218	NM_080818	HPRD:06082	OXGR1	GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_73667	chr3	197326021	197326323	+	17.33757	NA	Intergenic	Intergenic	-25978	NM_203315	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_65854	chr22	44701802	44702047	+	17.33757	NA	intron (NM_001099294, intron 1 of 4)	intron (NM_001099294, intron 1 of 4)	6807	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
19-PTNLD28-TUMOR_peak_82254	chr5	133922604	133922872	+	17.33576	NA	Intergenic	Intergenic	45795	NM_001033503	51128	Hs.432984	NM_016103	HPRD:09647	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated, Ras related GTPase 1B	protein-coding
19-PTNLD28-TUMOR_peak_51035	chr2	10146749	10147017	+	17.33576	NA	Intergenic	Intergenic	-36799	NM_003597	8462	Hs.12229	NM_003597	HPRD:04488	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
19-PTNLD28-TUMOR_peak_17440	chr11	17008089	17008635	+	17.33081	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	27601	NM_175058	144100	Hs.12332	NM_175058	HPRD:15142	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
19-PTNLD28-TUMOR_peak_39626	chr17	1480555	1480741	+	17.32850	NA	intron (NM_152346, intron 12 of 13)	intron (NM_152346, intron 12 of 13)	-14538	NM_006224	5306	Hs.429819	NM_006224	HPRD:02548	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein, alpha	protein-coding
19-PTNLD28-TUMOR_peak_83492	chr5	157205187	157205419	+	17.32850	NA	Intergenic	Intergenic	34548	NM_173491	134353	Hs.631954	NM_173491		LSM11	-	LSM11, U7 small nuclear RNA associated	protein-coding
19-PTNLD28-TUMOR_peak_33379	chr15	44588821	44589125	+	17.32850	NA	intron (NM_177974, intron 1 of 8)	intron (NM_177974, intron 1 of 8)	8064	NM_138423	113201	Hs.512867	NM_138423	HPRD:11018	CASC4	H63	cancer susceptibility candidate 4	protein-coding
19-PTNLD28-TUMOR_peak_101870	chr9	214696	215176	+	17.32850	NA	promoter-TSS (NM_203447)	promoter-TSS (NM_203447)	71	NM_203447	81704	Hs.132599	NM_203447	HPRD:10920	DOCK8	HEL-205|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
19-PTNLD28-TUMOR_peak_87721	chr6	44838754	44838967	+	17.32850	NA	intron (NM_003599, intron 10 of 10)	L1PA2|LINE|L1	326647	NR_030313	693171		NR_030313		MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
19-PTNLD28-TUMOR_peak_35778	chr16	2185388	2185531	+	17.32680	NA	TTS (NR_037467)	TTS (NR_037467)	440	NM_001009944	5310	Hs.75813	NM_000296	HPRD:03203	PKD1	PBP|Pc-1|TRPP1	polycystic kidney disease 1 (autosomal dominant)	protein-coding
19-PTNLD28-TUMOR_peak_43489	chr17	73868955	73869172	+	17.32418	NA	Intergenic	Intergenic	5593	NM_033452	91107	Hs.293660	NM_033452	HPRD:15564	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
19-PTNLD28-TUMOR_peak_104429	chr9	91391766	91391965	+	17.32345	NA	Intergenic	Intergenic	-31045	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_108647	chrX	69353040	69353363	+	17.32345	NA	promoter-TSS (NM_001551)	promoter-TSS (NM_001551)	-117	NM_001551	3476	Hs.496267	NM_001551	HPRD:02140	IGBP1	ALPHA-4|IBP1	immunoglobulin (CD79A) binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_33596	chr15	52394752	52395001	+	17.32345	NA	Intergenic	L2|LINE|L2	10096	NM_020396	10017	Hs.283672	NM_020396	HPRD:06071	BCL2L10	BCL-B|Boo|Diva	BCL2-like 10 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_101402	chr8	141563224	141563517	+	17.32345	NA	intron (NM_012154, intron 10 of 18)	AluJo|SINE|Alu	41289	NR_040712	54108	Hs.279704	NM_017444	HPRD:06275	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
19-PTNLD28-TUMOR_peak_96460	chr7	152131564	152131737	+	17.32192	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	1440	NM_170606	58508	Hs.647120	NM_021230	HPRD:06016	KMT2C	HALR|MLL3	lysine (K)-specific methyltransferase 2C	protein-coding
19-PTNLD28-TUMOR_peak_17906	chr11	33642323	33642581	+	17.32110	NA	intron (NM_012194, intron 15 of 19)	intron (NM_012194, intron 15 of 19)	78575	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
19-PTNLD28-TUMOR_peak_77211	chr4	140587321	140587604	+	17.32110	NA	intron (NM_001204367, intron 1 of 4)	intron (NM_001204367, intron 1 of 4)	540	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_14347	chr10	75634122	75634365	+	17.31880	NA	5' UTR (NM_001204492, exon 1 of 21)	5' UTR (NM_001204492, exon 1 of 21)	106	NM_001222	818	Hs.523045	NM_001222	HPRD:03672	CAMK2G	CAMK|CAMK-II|CAMKG	calcium/calmodulin-dependent protein kinase II gamma	protein-coding
19-PTNLD28-TUMOR_peak_9164	chr1	200973973	200974123	+	17.31880	NA	exon (NM_001252103, exon 6 of 34)	exon (NM_001252103, exon 6 of 34)	18780	NM_001252103	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19-PTNLD28-TUMOR_peak_61451	chr20	45279829	45280295	+	17.31880	NA	promoter-TSS (NM_022829)	promoter-TSS (NM_022829)	38	NM_001193342	64849	Hs.655498	NM_022829	HPRD:10450	SLC13A3	NADC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_86066	chr6	25991960	25992447	+	17.31240	NA	Intergenic	CpG	25837	NM_005325	3024	Hs.150206	NM_005325	HPRD:00820	HIST1H1A	H1.1|H1A|H1F1|HIST1	histone cluster 1, H1a	protein-coding
19-PTNLD28-TUMOR_peak_67187	chr3	24169873	24170464	+	17.30963	NA	intron (NM_001128176, intron 9 of 10)	MIRb|SINE|MIR	-22647	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
19-PTNLD28-TUMOR_peak_18915	chr11	61638692	61639007	+	17.30963	NA	Intergenic	Intergenic	6901	NR_106804	102465446		NR_106804		MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
19-PTNLD28-TUMOR_peak_9690	chr1	206107839	206108103	+	17.30963	NA	Intergenic	L3b|LINE|CR1	-30469	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_82450	chr5	137774627	137774934	+	17.30963	NA	promoter-TSS (NM_016606)	promoter-TSS (NM_016606)	90	NR_073448	51308	Hs.416090	NM_016606	HPRD:16655	REEP2	C5orf19|SGC32445|SPG72	receptor accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_9610	chr1	205288748	205288954	+	17.30414	NA	intron (NM_030952, intron 1 of 6)	intron (NM_030952, intron 1 of 6)	2032	NM_030952	81788	Hs.497512	NM_030952	HPRD:12172	NUAK2	SNARK	NUAK family, SNF1-like kinase, 2	protein-coding
19-PTNLD28-TUMOR_peak_17928	chr11	33746253	33746411	+	17.30286	NA	intron (NM_000611, intron 1 of 3)	intron (NM_000611, intron 1 of 3)	-1834	NM_001127227	966	Hs.278573	NM_000611		CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule, complement regulatory protein	protein-coding
19-PTNLD28-TUMOR_peak_8041	chr1	168254124	168254293	+	17.30286	NA	intron (NM_005149, intron 1 of 7)	intron (NM_005149, intron 1 of 7)	3930	NM_005149	9095	Hs.716656	NM_005149	HPRD:05214	TBX19	TBS19|TPIT|dJ747L4.1	T-box 19	protein-coding
19-PTNLD28-TUMOR_peak_91220	chr7	6989962	6990121	+	17.30286	NA	Intergenic	LTR2C|LTR|ERV1	-124115	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_48586	chr19	34662883	34663455	+	17.30286	NA	promoter-TSS (NM_001114093)	promoter-TSS (NM_001114093)	-183	NM_015578	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_26404	chr12	113580236	113580835	+	17.29984	NA	Intergenic	Intergenic	-6491	NM_001193520	8437	Hs.528693	NM_004658	HPRD:04986	RASAL1	RASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
19-PTNLD28-TUMOR_peak_101776	chr8	145733563	145733713	+	17.29984	NA	promoter-TSS (NM_138431)	promoter-TSS (NM_138431)	-914	NM_138431	113655	Hs.7678	NM_138431	HPRD:14003	MFSD3	-	major facilitator superfamily domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_78193	chr4	183730985	183731136	+	17.29109	NA	Intergenic	Intergenic	107570	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_68526	chr3	57041605	57041771	+	17.29109	NA	intron (NM_001128615, intron 2 of 12)	intron (NM_001128615, intron 2 of 12)	-52781	NM_181727	353324	Hs.129794	NM_181727	HPRD:15426	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
19-PTNLD28-TUMOR_peak_62635	chr20	62581337	62581566	+	17.28901	NA	intron (NM_017859, intron 1 of 14)	intron (NM_017859, intron 1 of 14)	1076	NM_001193379	54963	Hs.504998	NM_017859	HPRD:15607	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_40385	chr17	17478733	17478967	+	17.28560	NA	intron (NM_001267552, intron 2 of 7)	intron (NM_001267552, intron 2 of 7)	1929	NM_148173	10400	Hs.714193	NM_007169	HPRD:03862	PEMT	PEAMT|PEMPT|PEMT2|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_23432	chr12	25654592	25654844	+	17.28560	NA	intron (NM_001145729, intron 8 of 8)	intron (NM_001145729, intron 8 of 8)	51499	NM_001145728	160492	Hs.44647	NM_152590	HPRD:08768	LMNTD1	IFLTD1|PAS1C1	lamin tail domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_78124	chr4	177241616	177241807	+	17.28560	NA	intron (NM_021928, intron 1 of 4)	CpG	621	NM_021928	60559	Hs.42194	NM_021928	HPRD:08001	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_31162	chr14	71788862	71789027	+	17.28560	NA	Intergenic	Intergenic	-76110	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_97214	chr8	12278664	12278832	+	17.28560	NA	Intergenic	Intergenic	-3207	NR_073395	389633	Hs.650464	NR_036463		FAM90A25P	-	family with sequence similarity 90, member A7 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30563	chr14	59216028	59216204	+	17.28560	NA	Intergenic	Intergenic	-78890	NR_110547	102723742	Hs.232734	NR_110547		LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
19-PTNLD28-TUMOR_peak_66555	chr3	10780434	10780798	+	17.28447	NA	Intergenic	Intergenic	25261	NR_027102	285370	Hs.157613	NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
19-PTNLD28-TUMOR_peak_56217	chr2	149380755	149380944	+	17.28447	NA	Intergenic	Intergenic	-21711	NM_015630	26122	Hs.23270	NM_015630	HPRD:13274	EPC2	EPC-LIKE	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_42285	chr17	48929418	48929731	+	17.28447	NA	Intergenic	Intergenic	14141	NM_001243885	10140	Hs.703321	NM_005749	HPRD:09273	TOB1	APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
19-PTNLD28-TUMOR_peak_21782	chr11	123045482	123045792	+	17.28447	NA	intron (NM_024769, intron 1 of 6)	intron (NM_024769, intron 1 of 6)	20370	NM_024769	79827	Hs.591949	NM_024769	HPRD:16513	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR-like membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_58220	chr2	213793952	213794217	+	17.28447	NA	Intergenic	Intergenic	-3024	NR_039936	100616472		NR_039936		MIR4776-2	-	microRNA 4776-2	ncRNA
19-PTNLD28-TUMOR_peak_37634	chr16	47217124	47217266	+	17.28447	NA	intron (NM_030790, intron 14 of 17)	L1PA3|LINE|L1	39216	NR_110904	101927102	Hs.634652	NR_110903		LOC101927102	-	uncharacterized LOC101927102	ncRNA
19-PTNLD28-TUMOR_peak_72278	chr3	170444474	170444664	+	17.28447	NA	Intergenic	L2a|LINE|L2	-140706	NM_020949	57709	Hs.596660	NM_020949	HPRD:17222	SLC7A14	PPP1R142	solute carrier family 7, member 14	protein-coding
19-PTNLD28-TUMOR_peak_103202	chr9	42126240	42126448	+	17.28447	NA	Intergenic	LTR16B|LTR|ERVL	-106760	NR_003670	654466	Hs.536967	NM_001039113		KGFLP2	-	keratinocyte growth factor-like protein 2	pseudo
19-PTNLD28-TUMOR_peak_36615	chr16	19195605	19195822	+	17.28447	NA	intron (NM_016524, intron 5 of 7)	L1MD2|LINE|L1	16075	NM_016524	51760	Hs.258326	NM_016524		SYT17	-	synaptotagmin XVII	protein-coding
19-PTNLD28-TUMOR_peak_22508	chr12	3053886	3054114	+	17.28447	NA	Intergenic	Intergenic	-14478	NM_003213	7004	Hs.94865	NM_003213	HPRD:03421	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_99677	chr8	99904241	99904552	+	17.28447	NA	intron (NM_001256312, intron 1 of 12)	L2b|LINE|L2	50403	NM_001256312	6788	Hs.492333	NM_006281	HPRD:05433	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_4299	chr1	69441370	69441588	+	17.28447	NA	Intergenic	Intergenic	-478575	NM_001114120	55635	Hs.445098	NM_017779	HPRD:10879	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89472	chr6	132128747	132128909	+	17.28447	NA	promoter-TSS (NM_006208)	promoter-TSS (NM_006208)	-328	NM_006208	5167	Hs.527295	NM_006208	HPRD:01415	ENPP1	ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_11949	chr10	8374087	8374672	+	17.28447	NA	Intergenic	Intergenic	-64111	NR_108058	100507143	Hs.258979	NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
19-PTNLD28-TUMOR_peak_88734	chr6	90313586	90313721	+	17.28447	NA	intron (NM_001242814, intron 3 of 12)	AluJr|SINE|Alu	34563	NR_028493	57226	Hs.177275	NM_020466	HPRD:13146	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_97020	chr8	8086780	8086941	+	17.27173	NA	intron (NR_024362, intron 1 of 7)	intron (NR_024362, intron 1 of 7)	768	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96482	chr7	152406875	152407458	+	17.27170	NA	Intergenic	Intergenic	-33916	NM_005431	7516	Hs.647093	NM_005431	HPRD:02656	XRCC2	-	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding
19-PTNLD28-TUMOR_peak_71261	chr3	139741330	139741509	+	17.26695	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	87392	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_72760	chr3	184007236	184007582	+	17.26695	NA	intron (NM_014693, intron 12 of 18)	intron (NM_014693, intron 12 of 18)	-9477	NM_002808	5708	Hs.518464	NM_002808	HPRD:05870	PSMD2	P97|RPN1|S2|TRAP2	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding
19-PTNLD28-TUMOR_peak_18478	chr11	47560381	47560556	+	17.26695	NA	intron (NM_006560, intron 1 of 13)	intron (NM_006560, intron 1 of 13)	14324	NM_006560	10658	Hs.595333	NM_006560	HPRD:03046	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP, Elav-like family member 1	protein-coding
19-PTNLD28-TUMOR_peak_6218	chr1	144621409	144621617	+	17.26695	NA	exon (NM_001037501, exon 6 of 20).2	exon (NM_001037501, exon 6 of 20).2	6554	NR_102405	728841	Hs.445080	NM_001037501		NBPF8	NBPF8P	neuroblastoma breakpoint family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_45050	chr18	25758219	25758454	+	17.26625	NA	promoter-TSS (NM_001792)	promoter-TSS (NM_001792)	-891	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_50752	chr2	697354	697531	+	17.26154	NA	Intergenic	L1MC3|LINE|L1	-20003	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_52229	chr2	38755399	38755537	+	17.26052	NA	Intergenic	Intergenic	-12586	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
19-PTNLD28-TUMOR_peak_75953	chr4	82136161	82136435	+	17.26052	NA	promoter-TSS (NM_001282485)	promoter-TSS (NM_001282485)	-27	NM_001282485	5593	Hs.232044	NM_006259	HPRD:09034	PRKG2	PRKGR2|cGK2|cGKII	protein kinase, cGMP-dependent, type II	protein-coding
19-PTNLD28-TUMOR_peak_53053	chr2	64438005	64438272	+	17.26052	NA	Intergenic	L2a|LINE|L2	-5519	NR_033837	150992	Hs.272318	NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
19-PTNLD28-TUMOR_peak_53683	chr2	80744593	80744782	+	17.26052	NA	intron (NM_001282597, intron 9 of 18)	intron (NM_001282597, intron 9 of 18)	204183	NM_001282599	1496	Hs.167368	NM_004389	HPRD:00228	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin (cadherin-associated protein), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_30198	chr14	50490974	50491150	+	17.26052	NA	intron (NR_102736, intron 3 of 5)	intron (NR_102736, intron 3 of 5)	15540	NR_102736	100506499	Hs.728904	NR_102736		LOC100506499	-	uncharacterized LOC100506499	ncRNA
19-PTNLD28-TUMOR_peak_45928	chr18	55891375	55891549	+	17.26052	NA	intron (NM_001144966, intron 1 of 29)	intron (NM_001144966, intron 1 of 29)	2708	NM_001144966	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_82992	chr5	146258123	146258400	+	17.26052	NA	promoter-TSS (NM_001271948)	promoter-TSS (NM_001271948)	87	NM_001271948	5521	Hs.627618	NM_181674	HPRD:05059	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
19-PTNLD28-TUMOR_peak_29390	chr14	21712715	21713040	+	17.26052	NA	intron (NM_001077443, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	24761	NM_004500	3183	Hs.508848	NM_004500	HPRD:01243	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding
19-PTNLD28-TUMOR_peak_35515	chr15	101442685	101442970	+	17.26052	NA	intron (NM_000693, intron 9 of 12)	intron (NM_000693, intron 9 of 12)	-16633	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_50084	chr19	52191547	52191750	+	17.26045	NA	non-coding (NR_108100, exon 2 of 2)	non-coding (NR_108100, exon 2 of 2)	-4217	NR_029843	407056		NR_029843	miRBase:MI0000746	MIR99B	MIRN99B	microRNA 99b	ncRNA
19-PTNLD28-TUMOR_peak_41057	chr17	33307413	33307870	+	17.25718	NA	5' UTR (NM_013975, exon 1 of 20)	5' UTR (NM_013975, exon 1 of 20)	124	NM_013975	3980	Hs.100299	NM_002311	HPRD:02966	LIG3	LIG2	ligase III, DNA, ATP-dependent	protein-coding
19-PTNLD28-TUMOR_peak_8191	chr1	172137471	172137927	+	17.25718	NA	intron (NM_001136127, intron 14 of 19)	intron (NM_001136127, intron 14 of 19)	-23724	NR_103486	100628315	Hs.584880	NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_57703	chr2	200336215	200336460	+	17.25718	NA	promoter-TSS (NM_015265)	promoter-TSS (NM_015265)	-348	NM_015265	23314	Hs.516617	NM_015265	HPRD:12178	SATB2	GLSS	SATB homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_40181	chr17	10002366	10002700	+	17.25718	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-62469	NM_201432	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_34537	chr15	75350805	75351050	+	17.25718	NA	Intergenic	Intergenic	15317	NM_001301105	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_48727	chr19	36352088	36352295	+	17.25718	NA	intron (NM_199180, intron 9 of 14)	intron (NM_199180, intron 9 of 14)	4239	NM_199179	84063	Hs.145729	NM_032123	HPRD:08473	KIRREL2	FILTRIN|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_94251	chr7	99588633	99588800	+	17.25718	NA	Intergenic	Intergenic	10331	NR_036679	646282	Hs.721816	NR_036679	ENSG00000214313	AZGP1P1	-	alpha-2-glycoprotein 1, zinc-binding pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_39499	chr16	89831443	89831732	+	17.25718	NA	intron (NM_001286167, intron 27 of 42)	intron (NM_001286167, intron 27 of 42)	43635	NM_001113525	92822	Hs.290154	NM_152287	HPRD:12235	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
19-PTNLD28-TUMOR_peak_22231	chr11	131076623	131076903	+	17.25487	NA	Intergenic	L2c|LINE|L2	-163608	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_99629	chr8	98607359	98607570	+	17.25487	NA	Intergenic	L1PA3|LINE|L1	-48943	NM_178812	92140	Hs.377155	NM_178812	HPRD:17459	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
19-PTNLD28-TUMOR_peak_14539	chr10	80810782	80810950	+	17.25487	NA	intron (NR_024429, intron 3 of 7)	intron (NR_024429, intron 3 of 7)	16339	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31824	chr14	94503017	94503138	+	17.25487	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	10353	NM_023112	78990	Hs.278815	NM_023112	HPRD:07620	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
19-PTNLD28-TUMOR_peak_4170	chr1	67006443	67006693	+	17.25487	NA	intron (NM_032291, intron 1 of 24)	MIR3|SINE|MIR	6743	NM_032291	84251	Hs.132121	NM_032291	HPRD:10910	SGIP1	-	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_104687	chr9	96919318	96919534	+	17.25487	NA	Intergenic	Intergenic	-18813	NR_029476	406881		NR_029476	miRBase:MI0000060	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
19-PTNLD28-TUMOR_peak_107433	chrX	5398543	5398695	+	17.25487	NA	Intergenic	L1PA2|LINE|L1	746625	NM_001282146	57502	Hs.21107	NM_020742	HPRD:02336	NLGN4X	ASPGX2|AUTSX2|HLNX|HNL4X|NLGN4	neuroligin 4, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_30336	chr14	53498956	53499098	+	17.25487	NA	Intergenic	Intergenic	-81212	NM_006832	10979	Hs.509343	NM_006832	HPRD:06374	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
19-PTNLD28-TUMOR_peak_52235	chr2	38875307	38875485	+	17.25487	NA	Intergenic	LOR1a|LTR|ERV1	-17656	NM_138801	130589	Hs.435012	NM_138801	HPRD:13559	GALM	GLAT|HEL-S-63p|IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
19-PTNLD28-TUMOR_peak_108675	chrX	70586094	70586217	+	17.24708	NA	promoter-TSS (NR_104389)	promoter-TSS (NR_104389)	66	NR_104388	6872	Hs.158560	NM_004606	HPRD:02436	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa	protein-coding
19-PTNLD28-TUMOR_peak_108368	chrX	52953046	52953183	+	17.24708	NA	Intergenic	Intergenic	24705	NM_001099684	727866	Hs.6451	NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156, member B	protein-coding
19-PTNLD28-TUMOR_peak_107824	chrX	24072360	24073271	+	17.23420	NA	promoter-TSS (NM_001415)	promoter-TSS (NM_001415)	-250	NM_001415	1968	Hs.539684	NM_001415		EIF2S3	EIF2|EIF2G|EIF2gamma|eIF-2gA	eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	protein-coding
19-PTNLD28-TUMOR_peak_94657	chr7	105028264	105028680	+	17.23420	NA	intron (NM_182692, intron 2 of 15)	CpG	905	NM_182692	6733	Hs.285197	NM_182691	HPRD:04280	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_24761	chr12	57621524	57621758	+	17.23420	NA	Intergenic	Intergenic	-1715	NM_005412	6472	Hs.741179	NM_005412	HPRD:00717	SHMT2	GLYA|HEL-S-51e|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_35175	chr15	90548422	90548639	+	17.23420	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	3807	NM_198526	374655	Hs.459311	NM_198526	HPRD:13329	ZNF710	-	zinc finger protein 710	protein-coding
19-PTNLD28-TUMOR_peak_35630	chr16	643526	643754	+	17.23317	NA	intron (NM_001172663, intron 2 of 6)	intron (NM_001172663, intron 2 of 6)	3467	NM_021168	57799	Hs.459630	NM_021168	HPRD:10182	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_42926	chr17	62981371	62981531	+	17.23317	NA	Intergenic	Intergenic	-9748	NR_026903	201283	Hs.396447	NM_153032	HPRD:08720	AMZ2P1	-	archaelysin family metallopeptidase 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_97548	chr8	21985785	21985915	+	17.23243	NA	intron (NM_018411, intron 2 of 17)	intron (NM_018411, intron 2 of 17)	2715	NM_018411	55806	Hs.272367	NM_005144	HPRD:03808	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	hair growth associated	protein-coding
19-PTNLD28-TUMOR_peak_37715	chr16	49736111	49736345	+	17.23000	NA	intron (NM_015069, intron 3 of 7)	intron (NM_015069, intron 3 of 7)	120421	NM_015069	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_48651	chr19	35629908	35630106	+	17.22734	NA	promoter-TSS (NM_005031)	promoter-TSS (NM_005031)	110	NM_001278717	5348	Hs.442498	NM_005031	HPRD:03837	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_49508	chr19	47120400	47120547	+	17.21953	NA	Intergenic	Intergenic	7881	NM_000960	5739	Hs.458324	NM_000960	HPRD:08959	PTGIR	IP|PRIPR	prostaglandin I2 (prostacyclin) receptor (IP)	protein-coding
19-PTNLD28-TUMOR_peak_63106	chr21	32091855	32091987	+	17.21397	NA	promoter-TSS (NM_001164435)	promoter-TSS (NM_001164435)	-826	NM_001164435	100288323	Hs.580877	NM_001164435	ENSG00000231068	KRTAP21-3	-	keratin associated protein 21-3	protein-coding
19-PTNLD28-TUMOR_peak_96013	chr7	142700586	142700765	+	17.21397	NA	Intergenic	Intergenic	23544	NM_001001658	135924	Hs.553594	NM_001001658	HPRD:15088	OR9A2	-	olfactory receptor, family 9, subfamily A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_44182	chr17_gl000206_random	33861	33992	+	17.21397	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_51271	chr2	15854892	15855059	+	17.21397	NA	intron (NR_110201, intron 4 of 5)	THE1B|LTR|ERVL-MaLR	24069	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LOC101926966	-	uncharacterized LOC101926966	ncRNA
19-PTNLD28-TUMOR_peak_1241	chr1	20062426	20062577	+	17.21103	NA	intron (NM_181719, intron 13 of 15)	MLT1H2|LTR|ERVL-MaLR	63909	NM_181719	255104	Hs.656313	NM_181719	HPRD:14140	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_63013	chr21	28945133	28945311	+	17.21103	NA	intron (NR_049807, intron 2 of 4)	intron (NR_049807, intron 2 of 4)	-149476	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
19-PTNLD28-TUMOR_peak_74168	chr4	6495281	6495926	+	17.21103	NA	intron (NM_001206995, intron 2 of 9)	intron (NM_001206995, intron 2 of 9)	-21277	NM_020416	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_6960	chr1	153458253	153458655	+	17.20929	NA	Intergenic	Intergenic	-25317	NM_002963	6278	Hs.112408	NM_002963	HPRD:02645	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
19-PTNLD28-TUMOR_peak_15225	chr10	102027213	102027809	+	17.20928	NA	promoter-TSS (NM_018294)	promoter-TSS (NM_018294)	-74	NM_018294	55280	Hs.215502	NM_018294	HPRD:13101	CWF19L1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_77833	chr4	159461673	159461832	+	17.20928	NA	intron (NR_045583, intron 1 of 16)	MER41B|LTR|ERV1	18886	NR_045583	59350	Hs.591686	NM_021634	HPRD:05975	RXFP1	LGR7|RXFPR1	relaxin/insulin-like family peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_1147	chr1	17407884	17408176	+	17.20928	NA	intron (NM_007365, intron 10 of 15)	intron (NM_007365, intron 10 of 15)	-27365	NM_003000	6390	Hs.465924	NM_003000	HPRD:01707	SDHB	CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding
19-PTNLD28-TUMOR_peak_90450	chr6	165129312	165129579	+	17.20928	NA	Intergenic	L1PA3|LINE|L1	593666	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_45760	chr18	48362933	48363305	+	17.20928	NA	Intergenic	Intergenic	-11365	NM_001127174	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_90994	chr7	3599124	3599310	+	17.20928	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	258137	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_69689	chr3	110599995	110600253	+	17.20928	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	188682	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74526	chr4	11237279	11237421	+	17.20928	NA	Intergenic	L1PA2|LINE|L1	-133101	NR_030298	693157		NR_030298	miRBase:MI0003579	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
19-PTNLD28-TUMOR_peak_54954	chr2	112228550	112228689	+	17.20423	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	24073	NR_015395	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_71323	chr3	140951208	140951486	+	17.20423	NA	intron (NM_001282728, intron 1 of 6)	CpG	680	NM_001037172	92370	Hs.657887	NM_152282	HPRD:08675	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_94360	chr7	100489296	100489462	+	17.20053	NA	intron (NM_015831, intron 3 of 4)	intron (NM_015831, intron 3 of 4)	-2040	NM_001015072	402682	Hs.534845	NM_001015072	HPRD:18630	UFSP1	UFSP	UFM1-specific peptidase 1 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_61336	chr20	44079174	44079333	+	17.19575	NA	Intergenic	MIR3|SINE|MIR	-19141	NM_006103	10406	Hs.2719	NM_006103	HPRD:11684	WFDC2	EDDM4|HE4|WAP5|dJ461P17.6	WAP four-disulfide core domain 2	protein-coding
19-PTNLD28-TUMOR_peak_32633	chr15	25915163	25915418	+	17.19575	NA	Intergenic	Intergenic	178682	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	ncRNA
19-PTNLD28-TUMOR_peak_68576	chr3	58007248	58007391	+	17.19575	NA	intron (NM_001457, intron 1 of 45)	intron (NM_001457, intron 1 of 45)	13192	NM_001164317	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_80426	chr5	68338792	68339205	+	17.19575	NA	Intergenic	Intergenic	-50778	NM_001251969	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_79116	chr5	16667033	16667175	+	17.19575	NA	intron (NM_012334, intron 40 of 40)	intron (NM_012334, intron 40 of 40)	-49937	NM_001034850	54463	Hs.481704	NM_019000	HPRD:07879	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
19-PTNLD28-TUMOR_peak_78062	chr4	174130793	174131003	+	17.19575	NA	intron (NM_017423, intron 1 of 11)	intron (NM_017423, intron 1 of 11)	40994	NM_017423	51809	Hs.548088	NM_017423	HPRD:10386	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_77779	chr4	157211246	157211725	+	17.19575	NA	Intergenic	L1PA2|LINE|L1	-336437	NM_001334	1519	Hs.75262	NM_001334	HPRD:02772	CTSO	CTSO1	cathepsin O	protein-coding
19-PTNLD28-TUMOR_peak_76120	chr4	86781177	86781558	+	17.19575	NA	intron (NM_001287805, intron 1 of 7)	intron (NM_001287805, intron 1 of 7)	32321	NM_001287805	83478	Hs.444229	NM_031305	HPRD:09804	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
19-PTNLD28-TUMOR_peak_86871	chr6	33636784	33636979	+	17.19450	NA	exon (NM_002224, exon 18 of 58)	exon (NM_002224, exon 18 of 58)	42647	NM_032340	84300	Hs.745020	NM_032340	HPRD:12847	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_7032	chr1	153949678	153949969	+	17.19366	NA	5' UTR (NM_006694, exon 1 of 5)	5' UTR (NM_006694, exon 1 of 5)	628	NM_006694	10899	Hs.6396	NM_006694	HPRD:05240	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
19-PTNLD28-TUMOR_peak_95558	chr7	135286078	135286233	+	17.19366	NA	exon (NM_015135, exon 17 of 43)	exon (NM_015135, exon 17 of 43)	43493	NM_015135	23165	Hs.743250	NM_015135	HPRD:17653	NUP205	C7orf14	nucleoporin 205kDa	protein-coding
19-PTNLD28-TUMOR_peak_103137	chr9	40666541	40666748	+	17.19314	NA	Intergenic	Intergenic	-33647	NM_001083124	727830	Hs.632078	NM_001083124	ENSG00000147926	SPATA31A3	FAM75A3	SPATA31 subfamily A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_103083	chr9	38926683	38926831	+	17.19314	NA	Intergenic	Intergenic	305672	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_80968	chr5	81074588	81074766	+	17.19314	NA	Intergenic	Intergenic	-27605	NM_001256736	23635	Hs.102735	NM_012446		SSBP2	HSPC116|SOSS-B2	single-stranded DNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_29876	chr14	35162395	35162758	+	17.19314	NA	Intergenic	LTR1|LTR|ERV1	20447	NM_021914	1073	Hs.180141	NM_021914	HPRD:03262	CFL2	NEM7	cofilin 2 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_41305	chr17	37729763	37730255	+	17.19314	NA	Intergenic	CpG	34166	NM_006160	4761	Hs.322431	NM_006160		NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding
19-PTNLD28-TUMOR_peak_33753	chr15	58866881	58867190	+	17.19314	NA	Intergenic	Intergenic	-76101	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_73437	chr3	194788862	194788993	+	17.19314	NA	TTS (NM_152531)	TTS (NM_152531)	-26390	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98773	chr8	54531321	54531938	+	17.19314	NA	Intergenic	HERVK9-int|LTR|ERVK	223973	NM_213620	51606	Hs.491737	NM_015941	HPRD:10591	ATP6V1H	MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	protein-coding
19-PTNLD28-TUMOR_peak_108130	chrX	46404545	46405083	+	17.19314	NA	promoter-TSS (NM_001039891)	promoter-TSS (NM_001039891)	78	NM_001039891	641339	Hs.636105	NM_001039891	ENSG00000251192	ZNF674	MRX92|ZNF673B	zinc finger protein 674	protein-coding
19-PTNLD28-TUMOR_peak_57777	chr2	201728902	201729103	+	17.19196	NA	5' UTR (NM_001162407, exon 1 of 13)	5' UTR (NM_001162407, exon 1 of 13)	282	NM_001162407	1195	Hs.433732	NM_004071	HPRD:09058	CLK1	CLK|CLK/STY|STY	CDC-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_7201	chr1	155279292	155279514	+	17.18600	NA	intron (NM_001135821, intron 1 of 10)	intron (NM_001135821, intron 1 of 10)	698	NM_001135821	2224	Hs.335918	NM_002004	HPRD:00606	FDPS	FPPS|FPS	farnesyl diphosphate synthase	protein-coding
19-PTNLD28-TUMOR_peak_93810	chr7	87258223	87258555	+	17.18403	NA	intron (NM_001134406, intron 1 of 9)	CpG	660	NM_001134406	154661	Hs.411488	NM_138290	HPRD:15274	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_62968	chr21	26980658	26980833	+	17.18305	NA	promoter-TSS (NM_017446)	promoter-TSS (NM_017446)	-944	NM_080794	54148	Hs.420696	NM_017446	HPRD:11371	MRPL39	C21orf92|L39mt|MRP-L5|MRPL5|PRED22|PRED66|RPML5	mitochondrial ribosomal protein L39	protein-coding
19-PTNLD28-TUMOR_peak_45425	chr18	42403875	42404075	+	17.18305	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	143112	NM_015559	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_62944	chr21	25259970	25260209	+	17.17047	NA	Intergenic	LTR1|LTR|ERV1	433601	NR_109963	101927869	Hs.555591	NR_109963	ENSG00000224832	LOC101927869	-	uncharacterized LOC101927869	ncRNA
19-PTNLD28-TUMOR_peak_106507	chr9	134902409	134902663	+	17.17047	NA	intron (NM_001253881, intron 2 of 6)	intron (NM_001253881, intron 2 of 6)	52738	NM_001253882	9442	Hs.374262	NM_004269	HPRD:05438	MED27	CRAP34|CRSP34|CRSP8|TRAP37	mediator complex subunit 27	protein-coding
19-PTNLD28-TUMOR_peak_5512	chr1	111470175	111470315	+	17.17047	NA	Intergenic	MLT2F|LTR|ERVL	36321	NM_018372	55791	Hs.25245	NM_018372	HPRD:17975	LRIF1	C1orf103|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_48355	chr19	28514049	28514253	+	17.17047	NA	Intergenic	Intergenic	-229303	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
19-PTNLD28-TUMOR_peak_32856	chr15	31456563	31456734	+	17.17047	NA	Intergenic	L1MC4a|LINE|L1	-3172	NM_001252020	4308	Hs.155942	NM_002420	HPRD:04656	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_14289	chr10	74068390	74068561	+	17.17047	NA	Intergenic	Intergenic	34798	NM_019058	54541	Hs.744875	NM_019058	HPRD:09662	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_100287	chr8	119301694	119301910	+	17.17047	NA	intron (NR_109794, intron 4 of 4)	intron (NR_109794, intron 4 of 4)	-177744	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_21975	chr11	126609482	126609951	+	17.17047	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	83735	NR_120533	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
19-PTNLD28-TUMOR_peak_80632	chr5	72804435	72804674	+	17.17047	NA	Intergenic	Intergenic	10304	NM_001207	689	Hs.591768	NM_001207	HPRD:03966	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_13793	chr10	62052857	62053120	+	17.17047	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	96646	NM_020987	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_12386	chr10	23384254	23384779	+	17.16671	NA	promoter-TSS (NM_012228)	promoter-TSS (NM_012228)	89	NM_012228	22921	Hs.461420	NM_012228	HPRD:17606	MSRB2	CBS-1|CBS1|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
19-PTNLD28-TUMOR_peak_99213	chr8	74371047	74371204	+	17.16671	NA	intron (NM_001164381, intron 12 of 13)	intron (NM_001164381, intron 12 of 13)	38816	NR_038406	100128126	Hs.679921	NR_038406	ENSG00000253302	STAU2-AS1	-	STAU2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42162	chr17	47913631	47914037	+	17.16671	NA	Intergenic	L2b|LINE|L2	-9438	NM_001242791	729220	Hs.434138	NM_001242791		FLJ45513	-	uncharacterized LOC729220	protein-coding
19-PTNLD28-TUMOR_peak_50335	chr19	55582568	55582773	+	17.16217	NA	Intergenic	Intergenic	-1756	NM_138412	112724	Hs.327631	NM_138412	HPRD:17963	RDH13	SDR7C3	retinol dehydrogenase 13 (all-trans/9-cis)	protein-coding
19-PTNLD28-TUMOR_peak_5694	chr1	115299595	115299748	+	17.15871	NA	intron (NM_001007553, intron 1 of 19)	intron (NM_001007553, intron 1 of 19)	1000	NM_001242892	7812	Hs.69855	NM_007158	HPRD:15949	CSDE1	D1S155E|UNR	cold shock domain containing E1, RNA-binding	protein-coding
19-PTNLD28-TUMOR_peak_22799	chr12	6807108	6807246	+	17.15871	NA	intron (NM_153685, intron 2 of 5)	intron (NM_153685, intron 2 of 5)	2419	NM_001244015	196500	Hs.44067	NM_153685	HPRD:13205	PIANP	C12orf53|PANP|leda-1	PILR alpha associated neural protein	protein-coding
19-PTNLD28-TUMOR_peak_40083	chr17	8152611	8152776	+	17.15869	NA	promoter-TSS (NM_012393)	promoter-TSS (NM_012393)	97	NM_012393	5198	Hs.573976	NM_012393	HPRD:09072	PFAS	FGAMS|FGARAT|PURL	phosphoribosylformylglycinamidine synthase	protein-coding
19-PTNLD28-TUMOR_peak_47699	chr19	15241179	15241333	+	17.15745	NA	Intergenic	Intergenic	-4646	NM_006844	10994	Hs.78880	NM_006844	HPRD:16152	ILVBL	209L8|AHAS|ILV2H	ilvB (bacterial acetolactate synthase)-like	protein-coding
19-PTNLD28-TUMOR_peak_64751	chr22	24639684	24639882	+	17.15608	NA	intron (NM_001099781, intron 1 of 11)	intron (NM_001099781, intron 1 of 11)	1327	NM_004121	2687	Hs.437156	NM_004121	HPRD:00666	GGT5	GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_49013	chr19	39938992	39939135	+	17.15604	NA	intron (NM_003169, intron 1 of 28)	intron (NM_003169, intron 1 of 28)	2775	NM_003169	6829	Hs.631604	NM_003169	HPRD:03655	SUPT5H	SPT5|SPT5H|Tat-CT1	suppressor of Ty 5 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_35113	chr15	89440672	89440837	+	17.15604	NA	Intergenic	Intergenic	-1984	NM_178232	145864	Hs.447530	NM_178232	HPRD:13629	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
19-PTNLD28-TUMOR_peak_872	chr1	12924530	12924811	+	17.15568	NA	Intergenic	MER52D|LTR|ERV1	7729	NM_023014	65122	Hs.104991	NM_023014	HPRD:11273	PRAMEF2	DJ845O24.3	PRAME family member 2	protein-coding
19-PTNLD28-TUMOR_peak_5539	chr1	112058380	112058999	+	17.15568	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-11946	NM_000677	140	Hs.281342	NM_000677	HPRD:08984	ADORA3	A3AR|AD026|bA552M11.5	adenosine A3 receptor	protein-coding
19-PTNLD28-TUMOR_peak_53965	chr2	87945166	87945447	+	17.15568	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	16027	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_29715	chr14	31528084	31528272	+	17.15568	NA	intron (NM_001254728, intron 1 of 5)	intron (NM_001254728, intron 1 of 5)	32329	NM_001254728	11154	Hs.293411	NM_007077	HPRD:06257	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor-related protein complex 4, sigma 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_66377	chr3	8664732	8664847	+	17.15568	NA	intron (NM_001256748, intron 11 of 11)	intron (NM_001256748, intron 11 of 11)	21695	NR_046358	51066	Hs.736935	NM_015931	HPRD:11267	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_77374	chr4	143767407	143767586	+	17.15568	NA	5' UTR (NM_003866, exon 1 of 27)	5' UTR (NM_003866, exon 1 of 27)	108	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_5813	chr1	116961008	116961508	+	17.15568	NA	promoter-TSS (NR_027645)	promoter-TSS (NR_027645)	-14	NR_027646	84852	Hs.664752	NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2071	chr1	32202161	32202629	+	17.13932	NA	intron (NM_001294335, intron 20 of 32)	intron (NM_001294335, intron 20 of 32)	21941	NR_036216	100423028		NR_036216		MIR4254	-	microRNA 4254	ncRNA
19-PTNLD28-TUMOR_peak_45948	chr18	56252005	56252286	+	17.13482	NA	intron (NM_052947, intron 3 of 12)	intron (NM_052947, intron 3 of 12)	44044	NM_052947	115701	Hs.628152	NM_052947	HPRD:11019	ALPK2	HAK	alpha-kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_92987	chr7	67361816	67362014	+	17.13482	NA	Intergenic	Intergenic	-123325	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_57205	chr2	178838189	178838492	+	17.13482	NA	intron (NM_001077197, intron 3 of 20)	L1HS|LINE|L1	-50776	NM_001077358	50940	Hs.570273	NM_016953	HPRD:05391	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
19-PTNLD28-TUMOR_peak_12097	chr10	13425203	13425750	+	17.13482	NA	Intergenic	Intergenic	-35178	NM_012247	22929	Hs.124027	NM_012247	HPRD:02944	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
19-PTNLD28-TUMOR_peak_98015	chr8	30031389	30031607	+	17.13482	NA	intron (NM_006571, intron 2 of 6)	intron (NM_006571, intron 2 of 6)	17685	NM_006571	10671	Hs.158427	NM_006571	HPRD:09907	DCTN6	WS-3|WS3|p27	dynactin 6	protein-coding
19-PTNLD28-TUMOR_peak_65408	chr22	37851443	37851665	+	17.13482	NA	Intergenic	Intergenic	-28049	NR_110512	114794	Hs.344170	NM_052906	HPRD:17229	ELFN2	LRRC62|PPP1R29	extracellular leucine-rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_75469	chr4	58060618	58060830	+	17.13482	NA	intron (NR_034081, intron 2 of 4)	intron (NR_034081, intron 2 of 4)	-84173	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_35589	chr16	147016	147203	+	17.13473	NA	intron (NM_001243248, intron 8 of 12)	intron (NM_001243248, intron 8 of 12)	18940	NM_001015052	4350	Hs.459596	NM_002434	HPRD:06766	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine-DNA glycosylase	protein-coding
19-PTNLD28-TUMOR_peak_95126	chr7	128220017	128220203	+	17.13473	NA	Intergenic	Intergenic	-61185	NR_024368	402483	Hs.722350	NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
19-PTNLD28-TUMOR_peak_108740	chrX	72163710	72163941	+	17.13473	NA	promoter-TSS (NR_026595)	promoter-TSS (NR_026595)	-236	NR_026595	203429	Hs.592230	NM_152693		FAM226A	CXorf50|LINC00246A|NCRNA00246|NCRNA00246A	family with sequence similarity 226, member A (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_13990	chr10	70310631	70310778	+	17.13473	NA	Intergenic	Intergenic	-9413	NM_030625	80312	Hs.567594	NM_030625	HPRD:09694	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_16954	chr11	8263394	8263704	+	17.13473	NA	intron (NM_001270428, intron 1 of 3)	intron (NM_001270428, intron 1 of 3)	21876	NR_073006	4004	Hs.654426	NM_002315	HPRD:01738	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
19-PTNLD28-TUMOR_peak_7608	chr1	160398504	160398745	+	17.13473	NA	TTS (NM_020335)	TTS (NM_020335)	28260	NM_020335	57216	Hs.99477	NM_020335	HPRD:02758	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
19-PTNLD28-TUMOR_peak_59033	chr2	237297645	237297934	+	17.13473	NA	intron (NM_001270585, intron 11 of 18)	L1PA2|LINE|L1	114551	NM_001270585	79781	Hs.591594	NM_024726	HPRD:13743	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
19-PTNLD28-TUMOR_peak_35378	chr15	97962112	97962584	+	17.13473	NA	intron (NR_120324, intron 3 of 4)	L1PA4|LINE|L1	102693	NR_120324	101927286	Hs.611279	NR_120324		LOC101927286	-	uncharacterized LOC101927286	ncRNA
19-PTNLD28-TUMOR_peak_41567	chr17	40915568	40915699	+	17.13473	NA	TTS (NM_005854)	TTS (NM_005854)	-2358	NR_024461	100190938	Hs.655265	NR_024461	ENSG00000197291	RAMP2-AS1	-	RAMP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28368	chr13	57311191	57311379	+	17.13473	NA	Intergenic	Intergenic	-403767	NM_001130404	729233	Hs.723090	NM_001130404	ENSG00000204918	PRR20B	-	proline rich 20B	protein-coding
19-PTNLD28-TUMOR_peak_37953	chr16	56352280	56352494	+	17.13473	NA	intron (NM_138736, intron 3 of 7)	intron (NM_138736, intron 3 of 7)	72955	NR_037499	100500891		NR_037499		MIR3935	-	microRNA 3935	ncRNA
19-PTNLD28-TUMOR_peak_39259	chr16	87312350	87312483	+	17.13473	NA	intron (NR_104667, intron 3 of 4)	intron (NR_104667, intron 3 of 4)	13642	NR_104667	101928682	Hs.149004	NR_104667		LOC101928682	-	uncharacterized LOC101928682	ncRNA
19-PTNLD28-TUMOR_peak_66324	chr3	6531966	6532407	+	17.13473	NA	Intergenic	L1PA2|LINE|L1	314950	NR_110123	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_16144	chr10	126727353	126727522	+	17.13473	NA	intron (NM_001329, intron 3 of 10)	intron (NM_001329, intron 3 of 10)	-5998	NR_036178	100423041		NR_036178		MIR4296	-	microRNA 4296	ncRNA
19-PTNLD28-TUMOR_peak_64697	chr22	24059472	24059751	+	17.13473	NA	promoter-TSS (NR_024448)	promoter-TSS (NR_024448)	-1	NR_024448	91316	Hs.148656	NR_024448	ENSG00000228315	GUSBP11	-	glucuronidase, beta pseudogene 11	pseudo
19-PTNLD28-TUMOR_peak_58222	chr2	213805626	213805883	+	17.13187	NA	Intergenic	Intergenic	-14694	NR_039936	100616472		NR_039936		MIR4776-2	-	microRNA 4776-2	ncRNA
19-PTNLD28-TUMOR_peak_104533	chr9	93667444	93667680	+	17.13187	NA	Intergenic	HERVK13-int|LTR|ERVK	77860	NM_001174167	6850	Hs.371720	NM_003177	HPRD:02514	SYK	p72-Syk	spleen tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_7116	chr1	154827808	154828293	+	17.13187	NA	intron (NM_002249, intron 1 of 7)	Tigger3|DNA|TcMar-Tigger	4288	NM_170782	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_1735	chr1	27344846	27345083	+	17.12610	NA	Intergenic	Intergenic	-5631	NM_052943	115572	Hs.632378	NM_052943	HPRD:16882	FAM46B	-	family with sequence similarity 46, member B	protein-coding
19-PTNLD28-TUMOR_peak_96074	chr7	143462860	143463064	+	17.12610	NA	Intergenic	Intergenic	-8119	NM_178561	340307	Hs.676333	NM_178561	ENSG00000271321	CTAGE6	CTAGE6P	CTAGE family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_72706	chr3	183255289	183255487	+	17.12610	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	-11135	NR_046687	100874019		NR_046687		KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105765	chr9	122031342	122031484	+	17.12610	NA	intron (NM_014618, intron 2 of 7)	MIRb|SINE|MIR	100326	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_24758	chr12	57576807	57577061	+	17.12610	NA	intron (NM_002332, intron 34 of 88)	intron (NM_002332, intron 34 of 88)	-11353	NR_031597	100302201		NR_031597		MIR1228	MIRN1228|hsa-mir-1228	microRNA 1228	ncRNA
19-PTNLD28-TUMOR_peak_98136	chr8	33456971	33457555	+	17.12610	NA	5' UTR (NM_024025, exon 1 of 4)	5' UTR (NM_024025, exon 1 of 4)	176	NM_024025	78986	Hs.8719	NM_024025	HPRD:14421	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_59935	chr20	16264654	16264902	+	17.12610	NA	intron (NM_024704, intron 25 of 25)	MER65B|LTR|ERV1	289301	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_68568	chr3	57963545	57963763	+	17.11982	NA	Intergenic	Intergenic	-30473	NM_001457	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_96440	chr7	151629498	151629690	+	17.11982	NA	Intergenic	Intergenic	-23870	NM_145292	168391	Hs.647077	NM_145292	HPRD:13565	GALNTL5	GALNACT19|GALNT15|GalNAc-T5L	polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding
19-PTNLD28-TUMOR_peak_14617	chr10	82168073	82168367	+	17.11982	NA	promoter-TSS (NM_001243780)	promoter-TSS (NM_001243780)	-22	NM_032333	84293	Hs.500333	NM_032333	HPRD:12580	FAM213A	C10orf58|PAMM	family with sequence similarity 213, member A	protein-coding
19-PTNLD28-TUMOR_peak_61689	chr20	48178342	48178580	+	17.11982	NA	intron (NM_000961, intron 1 of 9)	MIR|SINE|MIR	6246	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_64010	chr21	46369748	46370028	+	17.11528	NA	intron (NM_058190, intron 2 of 5)	intron (NM_058190, intron 2 of 5)	9933	NM_058190	85395	Hs.410830	NM_058190	HPRD:10765	FAM207A	C21orf70	family with sequence similarity 207, member A	protein-coding
19-PTNLD28-TUMOR_peak_105051	chr9	104242048	104242287	+	17.11528	NA	non-coding (NR_121573, exon 3 of 4)	non-coding (NR_121573, exon 3 of 4)	7308	NM_032342	84302	Hs.655738	NM_032342		TMEM246	C9orf125	transmembrane protein 246	protein-coding
19-PTNLD28-TUMOR_peak_48952	chr19	39350696	39350879	+	17.11528	NA	Intergenic	LTR13A|LTR|ERVK	-7808	NM_001005335	3191	Hs.644906	NM_001533	HPRD:04360	HNRNPL	HNRPL|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
19-PTNLD28-TUMOR_peak_76936	chr4	124468345	124468587	+	17.10011	NA	Intergenic	Intergenic	-105474	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_82692	chr5	140593325	140593785	+	17.10011	NA	promoter-TSS (NM_018933)	promoter-TSS (NM_018933)	64	NM_018933	56123	Hs.283803	NM_018933	HPRD:06957	PCDHB13	PCDH-BETA13	protocadherin beta 13	protein-coding
19-PTNLD28-TUMOR_peak_109846	chrX	152371973	152372192	+	17.10011	NA	Intergenic	L1MB5|LINE|L1	33823	NM_032882	84968	Hs.533301	NM_032882	HPRD:06637	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding
19-PTNLD28-TUMOR_peak_92892	chr7	65103973	65104118	+	17.10011	NA	intron (NR_038378, intron 8 of 9)	intron (NR_038378, intron 8 of 9)	-8722	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
19-PTNLD28-TUMOR_peak_18542	chr11	49229839	49230189	+	17.10011	NA	5' UTR (NM_004476, exon 1 of 19)	5' UTR (NM_004476, exon 1 of 19)	208	NM_001014986	2346	Hs.654487	NM_004476	HPRD:02961	FOLH1	FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP	folate hydrolase (prostate-specific membrane antigen) 1	protein-coding
19-PTNLD28-TUMOR_peak_90049	chr6	151550446	151550713	+	17.10011	NA	Intergenic	MER41B|LTR|ERV1	-10555	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_61819	chr20	49077355	49077552	+	17.09702	NA	Intergenic	Intergenic	-49405	NM_002827	5770	Hs.417549	NM_002827	HPRD:01477	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
19-PTNLD28-TUMOR_peak_97851	chr8	27559255	27559415	+	17.09656	NA	promoter-TSS (NR_037418)	promoter-TSS (NR_037418)	-51	NR_037418	100500871		NR_037418	miRBase:MI0016014	MIR3622B	-	microRNA 3622b	ncRNA
19-PTNLD28-TUMOR_peak_77228	chr4	140738116	140738280	+	17.09082	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	151276	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_76708	chr4	115416737	115416922	+	17.08725	NA	Intergenic	LTR9B|LTR|ERV1	-102782	NM_001128174	7368	Hs.144197	NM_003360	HPRD:03186	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_97028	chr8	8130845	8131009	+	17.08725	NA	Intergenic	Intergenic	44835	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52834	chr2	55066739	55066992	+	17.08725	NA	intron (NM_001039753, intron 6 of 40)	intron (NM_001039753, intron 6 of 40)	114716	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
19-PTNLD28-TUMOR_peak_60742	chr20	34463551	34463734	+	17.08725	NA	intron (NM_016436, intron 9 of 17)	intron (NM_016436, intron 9 of 17)	78906	NM_033630	51282	Hs.584909	NM_016558		SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_85911	chr6	22221959	22222100	+	17.08725	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-74607	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	-	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_2590	chr1	39090126	39090293	+	17.08725	NA	Intergenic	Intergenic	235286	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_22461	chr12	2049304	2049464	+	17.08725	NA	Intergenic	Intergenic	-3642	NR_036546	100271702	Hs.737031	NR_036546	ENSG00000235049	LINC00940	-	long intergenic non-protein coding RNA 940	ncRNA
19-PTNLD28-TUMOR_peak_55626	chr2	129622374	129622520	+	17.08725	NA	intron (NR_110278, intron 1 of 2)	L1PA2|LINE|L1	273	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_57078	chr2	175613729	175613917	+	17.08725	NA	intron (NM_001039523, intron 8 of 9)	intron (NM_001039523, intron 8 of 9)	15377	NM_001039523	1134	Hs.434479	NM_000079	HPRD:00007	CHRNA1	ACHRA|ACHRD|CHRNA|CMS2A|FCCMS|SCCMS	cholinergic receptor, nicotinic, alpha 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_8441	chr1	178161888	178162129	+	17.08725	NA	intron (NM_170692, intron 1 of 17)	intron (NM_170692, intron 1 of 17)	-98880	NR_027982	100302401	Hs.736117	NR_027982	ENSG00000224687	RASAL2-AS1	-	RASAL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38258	chr16	66892974	66893148	+	17.08725	NA	Intergenic	Intergenic	14220	NM_001014435	766	Hs.37014	NM_005182	HPRD:00263	CA7	CAVII	carbonic anhydrase VII	protein-coding
19-PTNLD28-TUMOR_peak_33713	chr15	58208894	58209155	+	17.08725	NA	Intergenic	Intergenic	97271	NM_170697	8854	Hs.643455	NM_003888	HPRD:04733	ALDH1A2	RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_105383	chr9	113046068	113046719	+	17.08102	NA	Intergenic	Intergenic	-27473	NM_001244938	7295	Hs.435136	NM_003329	HPRD:01761	TXN	TRDX|TRX|TRX1	thioredoxin	protein-coding
19-PTNLD28-TUMOR_peak_87708	chr6	44589691	44589852	+	17.08102	NA	Intergenic	Intergenic	186393	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_27735	chr13	31746679	31747017	+	17.08102	NA	Intergenic	Intergenic	-10323	NM_001286505	10808	Hs.743267	NM_006644	HPRD:09990	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109410	chrX	128770242	128770595	+	17.08102	NA	Intergenic	Intergenic	18515	NM_017413	8862	Hs.303084	NM_017413	HPRD:02246	APLN	APEL|XNPEP2	apelin	protein-coding
19-PTNLD28-TUMOR_peak_55523	chr2	127534870	127535205	+	17.08102	NA	Intergenic	CpG	121526	NM_002101	2995	Hs.59138	NM_002101	HPRD:00193	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
19-PTNLD28-TUMOR_peak_74210	chr4	6931844	6932118	+	17.07460	NA	intron (NM_001113361, intron 2 of 13)	intron (NM_001113361, intron 2 of 13)	20486	NM_020773	57533	Hs.518611	NM_020773	HPRD:11623	TBC1D14	-	TBC1 domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_70753	chr3	129661175	129661402	+	17.07460	NA	Intergenic	Intergenic	-31948	NM_007117	7200	Hs.182231	NM_007117	HPRD:08944	TRH	Pro-TRH|TRF	thyrotropin-releasing hormone	protein-coding
19-PTNLD28-TUMOR_peak_89999	chr6	150911697	150911893	+	17.07460	NA	Intergenic	Intergenic	-9204	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_35624	chr16	585560	585797	+	17.07460	NA	TTS (NR_049852)	TTS (NR_049852)	362	NR_049852	100847028		NR_049852		MIR5587	-	microRNA 5587	ncRNA
19-PTNLD28-TUMOR_peak_86408	chr6	29815892	29816087	+	17.07460	NA	Intergenic	Intergenic	21233	NM_002127	3135	Hs.512152	NM_002127	HPRD:00834	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
19-PTNLD28-TUMOR_peak_23565	chr12	29301918	29302227	+	17.07460	NA	5' UTR (NM_001271783, exon 1 of 12)	5' UTR (NM_001271783, exon 1 of 12)	136	NM_001271783	55711	Hs.728955	NM_018099	HPRD:14723	FAR2	MLSTD1|SDR10E2	fatty acyl CoA reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_96266	chr7	150000002	150000387	+	17.07446	NA	promoter-TSS (NM_001164459)	promoter-TSS (NM_001164459)	-125	NM_001164459	653857	Hs.664579	NM_001164458	ENSG00000106526	ACTR3C	ARP11	ARP3 actin-related protein 3 homolog C (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_18634	chr11	57107819	57107977	+	17.07446	NA	intron (NM_002559, intron 1 of 11)	intron (NM_002559, intron 1 of 11)	2057	NM_002559	5024	Hs.146738	NM_002559		P2RX3	P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding
19-PTNLD28-TUMOR_peak_95703	chr7	138348458	138348849	+	17.07290	NA	intron (NM_001139456, intron 3 of 14)	intron (NM_001139456, intron 3 of 14)	316	NM_174959	136306	Hs.99414	NM_174959	HPRD:11235	SVOPL	-	SVOP-like	protein-coding
19-PTNLD28-TUMOR_peak_14592	chr10	81744663	81744844	+	17.07164	NA	Intergenic	L2c|LINE|L2	-35892	NM_003019	6441	Hs.253495	NM_003019	HPRD:01522	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
19-PTNLD28-TUMOR_peak_46912	chr19	6516016	6516597	+	17.07164	NA	Intergenic	Intergenic	-13447	NM_001289127	10382	Hs.110837	NM_006087	HPRD:04045	TUBB4A	DYT4|TUBB4|TUBB5|beta-5	tubulin, beta 4A class IVa	protein-coding
19-PTNLD28-TUMOR_peak_48735	chr19	36392250	36392436	+	17.06287	NA	promoter-TSS (NM_139239)	promoter-TSS (NM_139239)	-791	NM_139239	84807	Hs.466531	NM_139239	HPRD:18140	NFKBID	IkappaBNS|TA-NFKBH	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta	protein-coding
19-PTNLD28-TUMOR_peak_948	chr1	15068819	15069156	+	17.06104	NA	intron (NM_201628, intron 1 of 14)	intron (NM_201628, intron 1 of 14)	143774	NM_201628	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_100188	chr8	117314325	117314539	+	17.06104	NA	intron (NR_046215, intron 1 of 13)	intron (NR_046215, intron 1 of 13)	22865	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
19-PTNLD28-TUMOR_peak_57232	chr2	179923372	179923547	+	17.06104	NA	Intergenic	Intergenic	-8673	NM_173648	285025	Hs.324341	NM_173648	HPRD:08257	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
19-PTNLD28-TUMOR_peak_9081	chr1	198203682	198204258	+	17.06104	NA	intron (NM_133494, intron 2 of 9)	intron (NM_133494, intron 2 of 9)	77862	NM_133494	140609	Hs.24119	NM_133494	HPRD:06027	NEK7	-	NIMA-related kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_19164	chr11	64405510	64405701	+	17.06104	NA	intron (NM_138732, intron 15 of 19)	CpG	5182	NM_138734	9379	Hs.372938	NM_015080	HPRD:11859	NRXN2	-	neurexin 2	protein-coding
19-PTNLD28-TUMOR_peak_4643	chr1	86296010	86296164	+	17.06104	NA	intron (NM_152890, intron 43 of 59)	L1PA3|LINE|L1	-121971	NM_017953	54680	Hs.5111	NM_017953	HPRD:08630	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger, HIT-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_73152	chr3	189679426	189679772	+	17.06104	NA	intron (NM_001134418, intron 14 of 14)	intron (NM_001134418, intron 14 of 14)	131888	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
19-PTNLD28-TUMOR_peak_22622	chr12	4990829	4991317	+	17.06104	NA	Intergenic	Intergenic	-28000	NM_000217	3736	Hs.416139	NM_000217	HPRD:08885	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	protein-coding
19-PTNLD28-TUMOR_peak_63395	chr21	37485105	37485304	+	17.06104	NA	intron (NR_040084, intron 1 of 3)	intron (NR_040084, intron 1 of 3)	13734	NR_040084	100133286	Hs.728809	NR_040084	ENSG00000230212	LOC100133286	-	uncharacterized LOC100133286	ncRNA
19-PTNLD28-TUMOR_peak_35279	chr15	92435665	92435956	+	17.06104	NA	intron (NM_013272, intron 1 of 9)	intron (NM_013272, intron 1 of 9)	38872	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_59928	chr20	15911589	15911888	+	17.06104	NA	intron (NM_080676, intron 10 of 16)	intron (NM_080676, intron 10 of 16)	642341	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_104914	chr9	100994455	100994591	+	17.06104	NA	intron (NR_051978, intron 3 of 11)	intron (NR_051978, intron 3 of 11)	-3024	NR_106913	102465514		NR_106913		MIR6854	hsa-mir-6854	microRNA 6854	ncRNA
19-PTNLD28-TUMOR_peak_75167	chr4	49074401	49074509	+	17.06104	NA	Intergenic	L1PA3|LINE|L1	85796	NM_001286791	80157	Hs.479703	NM_025087	HPRD:08638	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_65758	chr22	43000538	43000810	+	17.06104	NA	intron (NR_103820, intron 1 of 8)	intron (NR_103820, intron 1 of 8)	10294	NR_103820	84271	Hs.505802	NM_032311	HPRD:17875	POLDIP3	PDIP46|SKAR	polymerase (DNA-directed), delta interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_25695	chr12	96441364	96441688	+	17.06104	NA	Intergenic	Intergenic	-4228	NM_001256644	4048	Hs.524648	NM_000895	HPRD:01056	LTA4H	-	leukotriene A4 hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_15767	chr10	116149275	116149435	+	17.06104	NA	intron (NM_001001936, intron 1 of 18)	intron (NM_001001936, intron 1 of 18)	15182	NM_001001936	84632	Hs.501106	NM_032550	HPRD:13902	AFAP1L2	KIAA1914|XB130	actin filament associated protein 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_104883	chr9	100476778	100477123	+	17.06104	NA	Intergenic	Intergenic	-17259	NM_000380	7507	Hs.654364	NM_000380	HPRD:02045	XPA	XP1|XPAC	xeroderma pigmentosum, complementation group A	protein-coding
19-PTNLD28-TUMOR_peak_82616	chr5	139682629	139683059	+	17.05987	NA	promoter-TSS (NM_002622)	promoter-TSS (NM_002622)	-155	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_58051	chr2	207872903	207873110	+	17.05987	NA	Intergenic	Intergenic	68728	NM_173077	130749	Hs.684103	NM_173077	HPRD:07098	CPO	-	carboxypeptidase O	protein-coding
19-PTNLD28-TUMOR_peak_67340	chr3	30397211	30397387	+	17.05987	NA	Intergenic	Intergenic	-250695	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_76275	chr4	92712607	92712760	+	17.05987	NA	Intergenic	L1PA2|LINE|L1	-512867	NM_001286838	2895	Hs.162727	NM_001510	HPRD:06781	GRID2	GluD2	glutamate receptor, ionotropic, delta 2	protein-coding
19-PTNLD28-TUMOR_peak_29942	chr14	36631123	36631428	+	17.05987	NA	intron (NR_049735, intron 2 of 3)	L1PA7|LINE|L1	14582	NR_049735	100886964	Hs.742592	NR_049735		PTCSC3	-	papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_8266	chr1	173399106	173399291	+	17.05987	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	47096	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_64616	chr22	22575574	22575739	+	17.05987	NA	Intergenic	Intergenic	-23544	NM_007128	7441	Hs.247979	NM_007128	HPRD:05505	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
19-PTNLD28-TUMOR_peak_49268	chr19	44124017	44124179	+	17.05987	NA	promoter-TSS (NM_182498)	promoter-TSS (NM_182498)	-84	NM_182498	126299	Hs.99093	NM_182498	HPRD:14671	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
19-PTNLD28-TUMOR_peak_49418	chr19	46135839	46136002	+	17.05987	NA	intron (NM_001193268, intron 9 of 21)	intron (NM_001193268, intron 9 of 21)	6425	NR_029886	442902		NR_029886		MIR330	MIRN330|hsa-mir-330	microRNA 330	ncRNA
19-PTNLD28-TUMOR_peak_108665	chrX	70315562	70315733	+	17.05987	NA	promoter-TSS (NM_001170931)	promoter-TSS (NM_001170931)	-352	NM_001170931	4303	Hs.584654	NM_005938	HPRD:02070	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
19-PTNLD28-TUMOR_peak_76888	chr4	122722354	122722706	+	17.05987	NA	promoter-TSS (NM_001034194)	promoter-TSS (NM_001034194)	58	NM_001034194	5393	Hs.91728	NM_005033	HPRD:07315	EXOSC9	PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
19-PTNLD28-TUMOR_peak_49093	chr19	41104567	41104726	+	17.05742	NA	intron (NM_001042544, intron 1 of 32)	intron (NM_001042544, intron 1 of 32)	1505	NM_001042544	8425	Hs.466766	NM_003573	HPRD:05274	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_7593	chr1	160231398	160231592	+	17.05742	NA	intron (NM_015726, intron 1 of 13)	intron (NM_015726, intron 1 of 13)	782	NR_028106	50717	Hs.632447	NM_015726	HPRD:18300	DCAF8	GAN2|H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
19-PTNLD28-TUMOR_peak_24310	chr12	52537451	52537632	+	17.04666	NA	Intergenic	Intergenic	48243	NM_182507	144501	Hs.140978	NM_182507	HPRD:14068	KRT80	KB20	keratin 80	protein-coding
19-PTNLD28-TUMOR_peak_85284	chr6	10510844	10511049	+	17.04529	NA	Intergenic	Intergenic	-10622	NM_145649	2651	Hs.519884	NM_001491	HPRD:02695	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
19-PTNLD28-TUMOR_peak_24876	chr12	60367260	60367576	+	17.04529	NA	Intergenic	Intergenic	284300	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_36887	chr16	24099422	24099588	+	17.04529	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-167369	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_74605	chr4	15480752	15481366	+	17.04529	NA	intron (NM_020785, intron 5 of 6)	intron (NM_020785, intron 5 of 6)	9570	NM_001164720	57545	Hs.590928	NM_020785	ENSG00000048342	CC2D2A	JBTS9|MKS6	coiled-coil and C2 domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_92161	chr7	42271968	42272155	+	17.04529	NA	intron (NM_000168, intron 1 of 14)	intron (NM_000168, intron 1 of 14)	4557	NM_000168	2737	Hs.21509	NM_000168	HPRD:01313	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_54503	chr2	101383309	101384083	+	17.04529	NA	Intergenic	Intergenic	-52917	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_43575	chr17	74603810	74604088	+	17.04529	NA	Intergenic	HERVH-int|LTR|ERV1	-21804	NM_006456	10610	Hs.592105	NM_006456	HPRD:10231	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_26039	chr12	106695571	106695764	+	17.04169	NA	promoter-TSS (NM_001286262)	promoter-TSS (NM_001286262)	-902	NM_001286262	255394	Hs.696047	NM_152772	HPRD:17555	TCP11L2	-	t-complex 11, testis-specific-like 2	protein-coding
19-PTNLD28-TUMOR_peak_106657	chr9	137533424	137533611	+	17.04169	NA	promoter-TSS (NM_000093)	promoter-TSS (NM_000093)	-134	NM_001278074	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_58415	chr2	219207944	219208321	+	17.03392	NA	intron (NM_022572, intron 6 of 8)	intron (NM_022572, intron 6 of 8)	1498	NR_106868	102466197		NR_106868		MIR6810	hsa-mir-6810	microRNA 6810	ncRNA
19-PTNLD28-TUMOR_peak_856	chr1	12654985	12655414	+	17.03109	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	-16148	NR_106788	102466722		NR_106788		MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
19-PTNLD28-TUMOR_peak_66930	chr3	15934452	15934723	+	17.03075	NA	Intergenic	MER5B|DNA|hAT-Charlie	19309	NR_030289	693148		NR_030289	miRBase:MI0003569	MIR563	MIRN563|hsa-mir-563	microRNA 563	ncRNA
19-PTNLD28-TUMOR_peak_90335	chr6	159527903	159528231	+	17.03075	NA	Intergenic	MER51E|LTR|ERV1	-61883	NM_054114	117289	Hs.529984	NM_054114	HPRD:18143	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_58513	chr2	220385851	220385992	+	17.03075	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	7029	NM_182847	55515	Hs.87469	NM_018674	HPRD:16231	ASIC4	ACCN4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding
19-PTNLD28-TUMOR_peak_91994	chr7	35087588	35087826	+	17.03075	NA	Intergenic	Intergenic	-10054	NM_015283	23333	Hs.408623	NM_015283	ENSG00000173852	DPY19L1	-	dpy-19-like 1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_36712	chr16	20956394	20956795	+	17.03075	NA	intron (NM_017539, intron 57 of 61)	MER41B|LTR|ERV1	44519	NM_001128302	57149	Hs.745012	NM_020424	HPRD:14254	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_24674	chr12	56545525	56545818	+	17.03075	NA	promoter-TSS (NM_002475)	promoter-TSS (NM_002475)	-533	NM_002475	140465	Hs.632731	NM_002475	HPRD:14721	MYL6B	MLC1SA	myosin, light chain 6B, alkali, smooth muscle and non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_58501	chr2	220306194	220306376	+	17.02821	NA	intron (NM_005876, intron 1 of 40)	intron (NM_005876, intron 1 of 40)	6585	NM_005876	10290	Hs.21639	NM_005876	HPRD:10653	SPEG	APEG-1|APEG1|BPEG|SPEGalpha|SPEGbeta	SPEG complex locus	protein-coding
19-PTNLD28-TUMOR_peak_94342	chr7	100342892	100343175	+	17.02821	NA	intron (NR_111918, intron 7 of 46)	intron (NR_111918, intron 7 of 46)	11784	NR_111917	7455	Hs.307004	NM_003386	HPRD:03846	ZAN	-	zonadhesin	protein-coding
19-PTNLD28-TUMOR_peak_34597	chr15	76016227	76016427	+	17.02629	NA	promoter-TSS (NM_175881)	promoter-TSS (NM_175881)	8	NM_175881	161753	Hs.144348	NM_175881	HPRD:11360	ODF3L1	-	outer dense fiber of sperm tails 3-like 1	protein-coding
19-PTNLD28-TUMOR_peak_22725	chr12	6343440	6343668	+	17.02629	NA	intron (NM_001769, intron 4 of 7)	HY1|scRNA|scRNA	34072	NM_001769	928	Hs.114286	NM_001769	HPRD:00880	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
19-PTNLD28-TUMOR_peak_25256	chr12	71055634	71055890	+	17.02629	NA	intron (NM_001207015, intron 10 of 12)	intron (NM_001207015, intron 10 of 12)	-24542	NM_001109754	5787	Hs.434375	NM_002837	HPRD:01474	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
19-PTNLD28-TUMOR_peak_34562	chr15	75574991	75575227	+	17.02629	NA	promoter-TSS (NM_001145224)	promoter-TSS (NM_001145224)	-73	NM_001145224	653643	Hs.672474	NM_001145224		GOLGA6D	-	golgin A6 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_86869	chr6	33601378	33601509	+	17.02359	NA	intron (NM_002224, intron 1 of 57)	CpG	12287	NM_002224	3710	Hs.65758	NM_002224	HPRD:00926	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_35578	chr16	63421	63935	+	17.02228	NA	non-coding (NR_045117, exon 3 of 3)	non-coding (NR_045117, exon 3 of 3)	2123	NR_045117	100287029	Hs.592089	NR_045117		DDX11L10	DDX11L1|DDX11P	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 10	pseudo
19-PTNLD28-TUMOR_peak_54474	chr2	100877280	100877406	+	17.01472	NA	Intergenic	Intergenic	52627	NR_103730	150577	Hs.434127	NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
19-PTNLD28-TUMOR_peak_3517	chr1	53128344	53128641	+	17.01472	NA	Intergenic	L2c|LINE|L2	29426	NM_001042693	348378	Hs.424589	NM_182621	HPRD:14678	FAM159A	PRO7171|WWLS2783	family with sequence similarity 159, member A	protein-coding
19-PTNLD28-TUMOR_peak_9201	chr1	201315800	201315970	+	17.01472	NA	Intergenic	Intergenic	30943	NM_001276346	7139	Hs.533613	NM_000364	HPRD:01844	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T type 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_85961	chr6	24401836	24401969	+	17.00999	NA	Intergenic	AluSx1|SINE|Alu	-1234	NM_001286266	57380	Hs.658612	NM_020662	HPRD:17603	MRS2	HPT|MRS2L	MRS2 magnesium transporter	protein-coding
19-PTNLD28-TUMOR_peak_32680	chr15	27438432	27438596	+	17.00510	NA	intron (NM_033223, intron 3 of 9)	L1PA3|LINE|L1	-32048	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	LOC101928869	-	uncharacterized LOC101928869	ncRNA
19-PTNLD28-TUMOR_peak_19015	chr11	62465277	62465508	+	17.00510	NA	intron (NM_001130702, intron 3 of 9)	AluY|SINE|Alu	-8021	NM_203422	221091	Hs.427449	NM_203422	HPRD:17322	LRRN4CL	-	LRRN4 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_90029	chr6	151212992	151213269	+	17.00510	NA	intron (NM_001242768, intron 7 of 27)	intron (NM_001242768, intron 7 of 27)	25661	NM_001242768	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_81156	chr5	92549341	92549457	+	17.00510	NA	Intergenic	L1PA2|LINE|L1	357650	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1836	chr1	28510002	28510164	+	17.00510	NA	intron (NM_001164721, intron 1 of 2)	AluJb|SINE|Alu	-6628	NM_001164723	5724	Hs.77542	NM_000952	HPRD:01422	PTAFR	PAFR	platelet-activating factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_57645	chr2	198039337	198039536	+	17.00510	NA	intron (NM_001195144, intron 2 of 27)	L2a|LINE|L2	127807	NR_046837	101927547	Hs.687027	NR_046837		ANKRD44-IT1	-	ANKRD44 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_8795	chr1	183925780	183926086	+	17.00510	NA	intron (NM_015101, intron 6 of 11)	intron (NM_015101, intron 6 of 11)	80930	NM_015101	23127	Hs.387995	NM_015101	HPRD:13583	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_77484	chr4	148250330	148250522	+	17.00510	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-151643	NM_001256283	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_9153	chr1	200785852	200786094	+	17.00510	NA	intron (NM_001297708, intron 4 of 16)	(TATG)n|Simple_repeat|Simple_repeat	-56110	NM_005298	2848	Hs.534316	NM_005298	HPRD:03707	GPR25	-	G protein-coupled receptor 25	protein-coding
19-PTNLD28-TUMOR_peak_15757	chr10	116026361	116026576	+	17.00510	NA	intron (NM_001272046, intron 5 of 13)	intron (NM_001272046, intron 5 of 13)	27455	NM_001272046	340706	Hs.197741	NM_198496		VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_4693	chr1	87715557	87715757	+	17.00510	NA	intron (NM_001290053, intron 3 of 3)	intron (NM_001290053, intron 3 of 3)	37305	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
19-PTNLD28-TUMOR_peak_35255	chr15	91678719	91678938	+	17.00510	NA	intron (NM_014848, intron 2 of 13)	intron (NM_014848, intron 2 of 13)	35289	NM_014848	9899	Hs.21754	NM_014848	HPRD:11765	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
19-PTNLD28-TUMOR_peak_76301	chr4	95428916	95429179	+	17.00510	NA	intron (NM_001256428, intron 2 of 11)	intron (NM_001256428, intron 2 of 11)	56039	NM_001011515	10611	Hs.480311	NM_006457	HPRD:05799	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
19-PTNLD28-TUMOR_peak_62274	chr20	56014503	56014759	+	17.00085	NA	Intergenic	Intergenic	48177	NM_001291780	55544	Hs.236361	NM_017495	HPRD:15268	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
19-PTNLD28-TUMOR_peak_47764	chr19	15946625	15946855	+	16.99923	NA	non-coding (NR_015379, exon 3 of 3)	non-coding (NR_015379, exon 3 of 3)	6983	NR_015379	652995	Hs.644234	NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1	urothelial cancer associated 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_797	chr1	11919424	11919583	+	16.99365	NA	promoter-TSS (NM_002521)	promoter-TSS (NM_002521)	-511	NM_002521	4879	Hs.219140	NM_002521	HPRD:08974	NPPB	BNP	natriuretic peptide B	protein-coding
19-PTNLD28-TUMOR_peak_52814	chr2	54749906	54750090	+	16.99365	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-6361	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
19-PTNLD28-TUMOR_peak_25879	chr12	103827967	103828219	+	16.99365	NA	intron (NM_198521, intron 2 of 5)	MLT1K|LTR|ERVL-MaLR	61695	NR_103526	374470	Hs.534649	NM_198521	HPRD:13393	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
19-PTNLD28-TUMOR_peak_52813	chr2	54747871	54748124	+	16.99365	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-8362	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
19-PTNLD28-TUMOR_peak_7735	chr1	161968631	161968880	+	16.99365	NA	intron (NM_015441, intron 5 of 7)	L2a|LINE|L2	25500	NM_001297713	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_18864	chr11	61228110	61228326	+	16.99365	NA	Intergenic	Intergenic	-20367	NM_145017	220004	Hs.729003	NM_145017	HPRD:16933	PPP1R32	C11orf66|IIIG9	protein phosphatase 1, regulatory subunit 32	protein-coding
19-PTNLD28-TUMOR_peak_61548	chr20	46486034	46486241	+	16.99365	NA	Intergenic	Intergenic	-70777	NM_198596	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_13308	chr10	45858079	45858234	+	16.99365	NA	Intergenic	L1PA6|LINE|L1	-11468	NM_001256154	240	Hs.89499	NM_000698	HPRD:01065	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_38474	chr16	69213542	69213904	+	16.99365	NA	Intergenic	Intergenic	-7327	NM_006750	6645	Hs.461117	NM_006750	HPRD:02491	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
19-PTNLD28-TUMOR_peak_70290	chr3	124011262	124011443	+	16.99365	NA	intron (NM_001024660, intron 5 of 59)	intron (NM_001024660, intron 5 of 59)	-81827	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_3277	chr1	47534996	47535172	+	16.99365	NA	intron (NM_178134, intron 2 of 11)	intron (NM_178134, intron 2 of 11)	1924	NM_178134	199974	Hs.176588	NM_178134	HPRD:13111	CYP4Z1	CYP4A20	cytochrome P450, family 4, subfamily Z, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_61953	chr20	50582955	50583185	+	16.99365	NA	Intergenic	Intergenic	-103618	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
19-PTNLD28-TUMOR_peak_85349	chr6	11414884	11415150	+	16.99365	NA	Intergenic	MER57D|LTR|ERV1	-32436	NR_073131	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_36027	chr16	4642178	4642462	+	16.99365	NA	exon (NM_001145011, exon 11 of 16)	exon (NM_001145011, exon 11 of 16)	22607	NM_145253	124402	Hs.513313	NM_145253	HPRD:14025	UBALD1	FAM100A	UBA-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_54374	chr2	98313810	98313976	+	16.99365	NA	intron (NR_038386, intron 7 of 9)	intron (NR_038386, intron 7 of 9)	-16138	NM_001079	7535	Hs.234569	NM_001079	HPRD:01495	ZAP70	SRK|STCD|STD|TZK|ZAP-70	zeta-chain (TCR) associated protein kinase 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_60572	chr20	32045040	32045288	+	16.99365	NA	Intergenic	Intergenic	-13466	NM_003098	6640	Hs.31121	NM_003098	HPRD:03009	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_14606	chr10	82011568	82011729	+	16.99365	NA	Intergenic	Intergenic	37786	NM_000429	4143	Hs.282670	NM_000429	HPRD:02013	MAT1A	MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_68581	chr3	58097682	58097870	+	16.99365	NA	intron (NM_001457, intron 17 of 45)	intron (NM_001457, intron 17 of 45)	98954	NM_004944	1776	Hs.476453	NM_004944	HPRD:03764	DNASE1L3	DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease I-like 3	protein-coding
19-PTNLD28-TUMOR_peak_19161	chr11	64334104	64334308	+	16.99365	NA	intron (NM_018484, intron 6 of 9)	intron (NM_018484, intron 6 of 9)	11108	NM_018484	55867	Hs.220844	NM_018484	HPRD:06161	SLC22A11	OAT4|hOAT4	solute carrier family 22 (organic anion/urate transporter), member 11	protein-coding
19-PTNLD28-TUMOR_peak_93416	chr7	75203002	75203235	+	16.99365	NA	exon (NM_001243198, exon 8 of 29)	exon (NM_001243198, exon 8 of 29)	-45665	NR_028059	5387	Hs.659871	NM_005395	HPRD:17866	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_45283	chr18	35024806	35025152	+	16.99363	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	121021	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_12448	chr10	24646376	24646557	+	16.99065	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	81852	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_7740	chr1	162003323	162003519	+	16.99065	NA	Intergenic	Intergenic	-9166	NM_015441	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_40186	chr17	10023141	10023347	+	16.99065	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	78624	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_90401	chr6	161610901	161611313	+	16.99065	NA	intron (NM_020133, intron 2 of 8)	intron (NM_020133, intron 2 of 8)	-28093	NR_024277	79992	Hs.664873	NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82473	chr5	138051802	138051903	+	16.98794	NA	Intergenic	AluSq2|SINE|Alu	-37233	NM_001290309	1495	Hs.445981	NM_001903	HPRD:00285	CTNNA1	CAP102	catenin (cadherin-associated protein), alpha 1, 102kDa	protein-coding
19-PTNLD28-TUMOR_peak_32129	chr14	102691870	102692019	+	16.98794	NA	non-coding (NR_073540, exon 4 of 5)	non-coding (NR_073540, exon 4 of 5)	15014	NR_073542	5891	Hs.104119	NM_014226	HPRD:09310	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_100496	chr8	123990500	123990661	+	16.98794	NA	Intergenic	L2a|LINE|L2	64083	NM_024295	79139	Hs.241576	NM_024295	HPRD:12302	DERL1	DER-1|DER1	derlin 1	protein-coding
19-PTNLD28-TUMOR_peak_20467	chr11	86523089	86523356	+	16.98794	NA	TTS (NM_007173)	TTS (NM_007173)	11940	NM_001293178	11098	Hs.25338	NM_007173	HPRD:07149	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine, 23	protein-coding
19-PTNLD28-TUMOR_peak_906	chr1	13857141	13857352	+	16.98794	NA	Intergenic	Intergenic	-17004	NM_001010847	126755	Hs.657356	NM_001010847	ENSG00000162494	LRRC38	-	leucine rich repeat containing 38	protein-coding
19-PTNLD28-TUMOR_peak_79033	chr5	14648763	14648904	+	16.98794	NA	Intergenic	Intergenic	-15950	NM_138348	90268	Hs.406335	NM_138348	HPRD:14266	OTULIN	FAM105B|GUM	OTU deubiquitinase with linear linkage specificity	protein-coding
19-PTNLD28-TUMOR_peak_109649	chrX	140500105	140500287	+	16.98794	NA	Intergenic	Intergenic	-90647	NR_037183	619455	Hs.590784	NR_037183		SPANXA2-OT1	CXorf18	SPANXA2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_11024	chr1	234843518	234843671	+	16.98794	NA	Intergenic	Intergenic	-16195	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_65255	chr22	35467894	35468050	+	16.98794	NA	intron (NM_001008494, intron 1 of 3)	intron (NM_001008494, intron 1 of 3)	5842	NM_001008494	91464	Hs.567637	NM_001008494	HPRD:17957	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_3162	chr1	45978385	45978559	+	16.98515	NA	intron (NM_181696, intron 5 of 5)	intron (NM_181696, intron 5 of 5)	9138	NM_002574	5052	Hs.180909	NM_002574	HPRD:01458	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
19-PTNLD28-TUMOR_peak_43484	chr17	73844644	73844958	+	16.98151	NA	intron (NM_012478, intron 3 of 7)	intron (NM_012478, intron 3 of 7)	-4003	NM_199242	201294	Hs.41045	NM_199242	HPRD:10598	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_29576	chr14	24707469	24707696	+	16.98093	NA	exon (NM_016576, exon 8 of 9)	exon (NM_016576, exon 8 of 9)	4298	NM_001099274	26277	Hs.496191	NM_012461	HPRD:16056	TINF2	DKCA3|TIN2	TERF1 (TRF1)-interacting nuclear factor 2	protein-coding
19-PTNLD28-TUMOR_peak_84840	chr6	2980820	2980972	+	16.98074	NA	Intergenic	Intergenic	-7305	NR_026855	401232	Hs.720158	NM_207495	HPRD:16819	LINC01011	DKFZP686I15217	long intergenic non-protein coding RNA 1011	ncRNA
19-PTNLD28-TUMOR_peak_32511	chr15	22082996	22083195	+	16.98074	NA	promoter-TSS (NM_001277304).2	promoter-TSS (NM_001277304).2	46	NR_110752	102724631	Hs.722659	NM_207355		LOC102724631	POTE-15|POTEB	POTE ankyrin domain family, member B-like	protein-coding
19-PTNLD28-TUMOR_peak_64445	chr22	20454892	20455017	+	16.98074	NA	Intergenic	Intergenic	6832	NM_015672	85376	Hs.115429	NM_015672	ENSG00000196622	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_88600	chr6	86132749	86133062	+	16.98074	NA	Intergenic	AluJb|SINE|Alu	-26397	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_45410	chr18	42231956	42232129	+	16.98009	NA	Intergenic	Intergenic	-28096	NM_001130110	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_71659	chr3	149687863	149688691	+	16.97894	NA	promoter-TSS (NR_036538)	promoter-TSS (NR_036538)	464	NM_002628	5217	Hs.91747	NM_002628	HPRD:01451	PFN2	D3S1319E|PFL	profilin 2	protein-coding
19-PTNLD28-TUMOR_peak_6743	chr1	151138929	151139166	+	16.97894	NA	promoter-TSS (NM_001136543)	promoter-TSS (NM_001136543)	549	NM_024041	79005	Hs.732060	NM_024041	HPRD:12162	SCNM1	-	sodium channel modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_34435	chr15	74091914	74092119	+	16.97894	NA	Intergenic	Intergenic	31461	NR_120352	101929221		NR_120352		LOC101929221	-	uncharacterized LOC101929221	ncRNA
19-PTNLD28-TUMOR_peak_92237	chr7	44025596	44025839	+	16.97634	NA	intron (NR_003655, intron 7 of 15)	intron (NR_003655, intron 7 of 15)	-14772	NM_175064	285955	Hs.645483	NM_175064	HPRD:11677	SPDYE1	Ringo1|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
19-PTNLD28-TUMOR_peak_62040	chr20	52196073	52196554	+	16.96637	NA	intron (NM_006526, intron 1 of 4)	MIR|SINE|MIR	3323	NM_006526	7764	Hs.155040	NM_006526	HPRD:04272	ZNF217	ZABC1	zinc finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_33729	chr15	58625226	58625518	+	16.96622	NA	Intergenic	Intergenic	-98803	NM_000236	3990	Hs.654472	NM_000236	HPRD:01058	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase, hepatic	protein-coding
19-PTNLD28-TUMOR_peak_113	chr1	1143470	1143624	+	16.96622	NA	Intergenic	Intergenic	-1458	NM_148901	8784	Hs.212680	NM_004195	HPRD:04879	TNFRSF18	AITR|CD357|GITR|GITR-D	tumor necrosis factor receptor superfamily, member 18	protein-coding
19-PTNLD28-TUMOR_peak_92705	chr7	56355255	56355390	+	16.95525	NA	Intergenic	AluSx|SINE|Alu	160746	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_101812	chr8	146055340	146055559	+	16.94580	NA	intron (NM_001282795, intron 3 of 4)	intron (NM_001282795, intron 3 of 4)	2546	NM_001282795	7553	Hs.493218	NM_003416	HPRD:01918	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
19-PTNLD28-TUMOR_peak_67060	chr3	19189473	19189744	+	16.94580	NA	promoter-TSS (NM_144633)	promoter-TSS (NM_144633)	-409	NM_144633	131096	Hs.475656	NM_144633	HPRD:10006	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
19-PTNLD28-TUMOR_peak_42500	chr17	55682644	55683093	+	16.94197	NA	intron (NR_110807, intron 2 of 2)	intron (NR_110807, intron 2 of 2)	2905	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_14591	chr10	81741776	81742311	+	16.94197	NA	Intergenic	CpG	-33182	NM_003019	6441	Hs.253495	NM_003019	HPRD:01522	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
19-PTNLD28-TUMOR_peak_43801	chr17	77001482	77001759	+	16.94197	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	4279	NM_001159773	124583	Hs.8859	NM_138793	HPRD:13003	CANT1	DBQD|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
19-PTNLD28-TUMOR_peak_63281	chr21	35348009	35348192	+	16.94197	NA	Intergenic	Intergenic	26870	NM_001288961	400863	Hs.729814	NM_207472		LOC400863	-	uncharactered LOC400863	protein-coding
19-PTNLD28-TUMOR_peak_34977	chr15	85176735	85177171	+	16.94197	NA	intron (NR_003654, intron 1 of 3)	CpG	2262	NR_004859	54581	Hs.658114	NM_022050	HPRD:18021	SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_11987	chr10	11059729	11060035	+	16.93621	NA	promoter-TSS (NM_006561)	promoter-TSS (NM_006561)	-11	NM_006561	10659	Hs.309288	NM_006561	HPRD:03964	CELF2	BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_27198	chr12	131355551	131355719	+	16.93621	NA	promoter-TSS (NM_001300796)	promoter-TSS (NM_001300796)	-904	NM_001300796	5901	Hs.10842	NM_006325		RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_38569	chr16	70741003	70741428	+	16.93621	NA	intron (NM_018052, intron 14 of 18)	intron (NM_018052, intron 14 of 18)	-21261	NM_138383	92154	Hs.432387	NM_138383	HPRD:14289	MTSS1L	ABBA-1	metastasis suppressor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_9173	chr1	201096015	201096184	+	16.93621	NA	Intergenic	Intergenic	-11599	NM_001270601	647219	Hs.143949	NM_001270601		ASCL5	bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
19-PTNLD28-TUMOR_peak_80182	chr5	60900556	60900775	+	16.93621	NA	Intergenic	Intergenic	-32971	NM_173667	285668	Hs.683866	NM_173667	HPRD:09962	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_84499	chr5	179263810	179263983	+	16.93585	NA	TTS (NM_016175)	TTS (NM_016175)	16054	NM_003900	8878	Hs.724025	NM_003900	HPRD:03319	SQSTM1	A170|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
19-PTNLD28-TUMOR_peak_19230	chr11	64949807	64950010	+	16.93480	NA	intron (NR_040008, intron 1 of 20)	intron (NR_040008, intron 1 of 20)	604	NM_005186	823	Hs.502842	NM_005186	HPRD:00253	CAPN1	CANP|CANP1|CANPL1|muCANP|muCL	calpain 1, (mu/I) large subunit	protein-coding
19-PTNLD28-TUMOR_peak_26914	chr12	123942683	123943250	+	16.93358	NA	intron (NR_104103, intron 1 of 1)	CpG	315	NM_022717	11066	Hs.632738	NM_007020		SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein 35kDa (U11/U12)	protein-coding
19-PTNLD28-TUMOR_peak_44843	chr18	20184767	20185004	+	16.93358	NA	Intergenic	Intergenic	181915	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_102119	chr9	6646508	6646639	+	16.93358	NA	promoter-TSS (NM_000170)	promoter-TSS (NM_000170)	-881	NM_000170	2731	Hs.584238	NM_000170	HPRD:01996	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
19-PTNLD28-TUMOR_peak_89669	chr6	138776559	138776757	+	16.93061	NA	intron (NM_020464, intron 3 of 6)	intron (NM_020464, intron 3 of 6)	-20227	NR_036099	100423001		NR_036099		MIR3145	-	microRNA 3145	ncRNA
19-PTNLD28-TUMOR_peak_97470	chr8	20292933	20293334	+	16.93061	NA	Intergenic	Intergenic	159849	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14255	chr10	73725005	73725164	+	16.92856	NA	intron (NM_004273, intron 1 of 2)	intron (NM_004273, intron 1 of 2)	964	NM_004273	9469	Hs.158304	NM_004273	HPRD:07052	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_84644	chr6	235986	236329	+	16.92856	NA	Intergenic	Intergenic	-55900	NR_104475	56940	Hs.29106	NM_020185	HPRD:13255	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
19-PTNLD28-TUMOR_peak_93593	chr7	77956087	77956300	+	16.92856	NA	intron (NM_001301128, intron 9 of 20)	LTR78B|LTR|ERV1	-20366	NR_003680	399670	Hs.568045	NR_003680	HPRD:14588	RPL13AP17	RPL13A_6_816	ribosomal protein L13a pseudogene 17	pseudo
19-PTNLD28-TUMOR_peak_103394	chr9	65543176	65543383	+	16.92856	NA	Intergenic	Intergenic	-33669	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_7967	chr1	167130645	167130793	+	16.92856	NA	Intergenic	MER41B|LTR|ERV1	34323	NR_110811	101928484	Hs.568496	NR_110811		LINC01363	RBSG4	long intergenic non-protein coding RNA 1363	ncRNA
19-PTNLD28-TUMOR_peak_31798	chr14	93701165	93701475	+	16.92856	NA	Intergenic	L2|LINE|L2	-27861	NM_032490	84520	Hs.20142	NM_032490	HPRD:16608	C14orf142	PNAS-127	chromosome 14 open reading frame 142	protein-coding
19-PTNLD28-TUMOR_peak_74000	chr4	3647014	3647280	+	16.92856	NA	Intergenic	Intergenic	32435	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	ncRNA
19-PTNLD28-TUMOR_peak_54557	chr2	102016632	102016852	+	16.92856	NA	intron (NM_001145664, intron 11 of 11)	MER31A|LTR|ERV1	-12777	NM_153836	200407	Hs.732289	NM_153836		CREG2	-	cellular repressor of E1A-stimulated genes 2	protein-coding
19-PTNLD28-TUMOR_peak_36188	chr16	9684078	9684221	+	16.92856	NA	Intergenic	L1HS|LINE|L1	-25901	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_98344	chr8	40059341	40059529	+	16.92856	NA	Intergenic	Intergenic	48448	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_30420	chr14	55561571	55561904	+	16.92856	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-34198	NM_001177388	3958	Hs.531081	NM_002306	HPRD:01090	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	lectin, galactoside-binding, soluble, 3	protein-coding
19-PTNLD28-TUMOR_peak_51157	chr2	11828357	11828833	+	16.92856	NA	intron (NM_001261428, intron 1 of 21)	intron (NM_001261428, intron 1 of 21)	10890	NM_001261428	23175	Hs.467740	NM_145693	HPRD:09271	LPIN1	PAP1	lipin 1	protein-coding
19-PTNLD28-TUMOR_peak_86455	chr6	30293530	30293821	+	16.92422	NA	promoter-TSS (NM_021253)	promoter-TSS (NM_021253)	236	NR_052012	414778	Hs.485041	NR_052012	ENSG00000270604	HCG17	LINC00046|NCRNA00046	HLA complex group 17 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_101186	chr8	135051601	135051769	+	16.92400	NA	Intergenic	L1PREC2|LINE|L1	152946	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_4190	chr1	67614909	67615117	+	16.92400	NA	Intergenic	Intergenic	-14359	NR_075077	400757	Hs.666621	NM_001013674	HPRD:18418	C1orf141	-	chromosome 1 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_48427	chr19	30221481	30221661	+	16.92400	NA	Intergenic	Intergenic	-14875	NM_001256047	83636	Hs.529094	NM_031448		C19orf12	NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_72103	chr3	160744516	160744734	+	16.92400	NA	intron (NM_139245, intron 2 of 3)	intron (NM_139245, intron 2 of 3)	78058	NM_033169	8706	Hs.418062	NM_003781	HPRD:09119	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)	protein-coding
19-PTNLD28-TUMOR_peak_79953	chr5	55471374	55471569	+	16.92400	NA	intron (NM_024669, intron 4 of 11)	intron (NM_024669, intron 4 of 11)	57715	NM_024669	79722	Hs.436214	NM_024669	HPRD:07758	ANKRD55	-	ankyrin repeat domain 55	protein-coding
19-PTNLD28-TUMOR_peak_17789	chr11	30134961	30135517	+	16.92400	NA	Intergenic	Intergenic	-96662	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_38190	chr16	64624521	64624720	+	16.92400	NA	Intergenic	L2a|LINE|L2	531299	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
19-PTNLD28-TUMOR_peak_25041	chr12	66089409	66089615	+	16.92400	NA	Intergenic	Intergenic	-53360	NR_120431	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_34008	chr15	65370361	65370481	+	16.92400	NA	exon (NM_001101362, exon 1 of 1)	exon (NM_001101362, exon 1 of 1)	1267	NM_001101362	390594	Hs.586890	NM_001101362	ENSG00000234438	KBTBD13	HCG1645727|NEM6	kelch repeat and BTB (POZ) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_82975	chr5	145912959	145913132	+	16.92400	NA	Intergenic	Intergenic	-17369	NM_194251	134391	Hs.483732	NM_194251		GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
19-PTNLD28-TUMOR_peak_104500	chr9	92746601	92746739	+	16.92400	NA	intron (NR_109791, intron 2 of 2)	intron (NR_109791, intron 2 of 2)	14972	NR_109791	101927847	Hs.584312	NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
19-PTNLD28-TUMOR_peak_41366	chr17	38407910	38408140	+	16.92400	NA	intron (NM_133264, intron 1 of 7)	MIRc|SINE|MIR	32451	NM_133264	147179	Hs.421622	NM_133264	HPRD:18304	WIPF2	WICH|WIRE	WAS/WASL interacting protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_20143	chr11	76270515	76270921	+	16.92400	NA	Intergenic	Intergenic	110326	NM_005512	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_20120	chr11	75569870	75570050	+	16.91555	NA	intron (NM_003369, intron 2 of 14)	intron (NM_003369, intron 2 of 14)	43748	NM_003369	7405	Hs.202470	NM_003369		UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
19-PTNLD28-TUMOR_peak_80232	chr5	63255251	63255397	+	16.91555	NA	TTS (NM_000524)	TTS (NM_000524)	2795	NM_000524	3350	Hs.247940	NM_000524		HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_100068	chr8	109588769	109589050	+	16.91555	NA	Intergenic	Intergenic	133056	NM_014673	9694	Hs.654351	NM_014673	HPRD:09657	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_68924	chr3	69439129	69439251	+	16.91555	NA	Intergenic	Intergenic	-3735	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_9623	chr1	205375347	205375564	+	16.91555	NA	intron (NR_037583, intron 2 of 3)	L1PA3|LINE|L1	15759	NM_001199052	93273	Hs.655520	NM_001001552	HPRD:13983	LEMD1	CT50|LEMP-1	LEM domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70788	chr3	130109043	130109164	+	16.91555	NA	intron (NM_153264, intron 6 of 39)	intron (NM_153264, intron 6 of 39)	44744	NR_022012	256076	Hs.205403	NM_153264	HPRD:08196	COL6A5	COL29A1|VWA4	collagen, type VI, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_109621	chrX	138277075	138277347	+	16.91555	NA	intron (NM_001139501, intron 2 of 7)	intron (NM_001139501, intron 2 of 7)	9974	NM_001139498	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_46142	chr18	61870144	61870461	+	16.91555	NA	intron (NR_033881, intron 2 of 9)	intron (NR_033881, intron 2 of 9)	-54042	NR_027245	221241	Hs.567778	NM_152728	HPRD:16624	LINC00305	C18orf20|HsT1235|NCRNA00305	long intergenic non-protein coding RNA 305	ncRNA
19-PTNLD28-TUMOR_peak_70944	chr3	133614921	133615126	+	16.91372	NA	promoter-TSS (NM_016577)	promoter-TSS (NM_016577)	-332	NM_016577	51560	Hs.715344	NM_016577	HPRD:11474	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_91402	chr7	17411924	17412106	+	16.91372	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2526	NR_110014	102659288	Hs.559488	NR_110014		LOC102659288	-	uncharacterized LOC102659288	ncRNA
19-PTNLD28-TUMOR_peak_79447	chr5	34687017	34687182	+	16.91372	NA	promoter-TSS (NM_001145523)	promoter-TSS (NM_001145523)	-565	NM_001145523	26064	Hs.431400	NM_015577	HPRD:09416	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
19-PTNLD28-TUMOR_peak_72359	chr3	171871184	171871365	+	16.91372	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	112930	NM_001135095	64778	Hs.744888	NM_022763	HPRD:10943	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_7157	chr1	155058243	155058462	+	16.90857	NA	intron (NM_004952, intron 2 of 4)	intron (NM_004952, intron 2 of 4)	7004	NM_004952	1944	Hs.516656	NM_004952	HPRD:03225	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin-A3	protein-coding
19-PTNLD28-TUMOR_peak_64608	chr22	22465058	22465215	+	16.90807	NA	Intergenic	Intergenic	-127896	NM_001282113	8940	Hs.436401	NM_003935	HPRD:04662	TOP3B	TOP3B1	topoisomerase (DNA) III beta	protein-coding
19-PTNLD28-TUMOR_peak_87126	chr6	36703414	36703816	+	16.90807	NA	Intergenic	L2c|LINE|L2	37987	NM_001257357	401258	Hs.485258	NM_207498		RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_40071	chr17	8090057	8090306	+	16.90328	NA	promoter-TSS (NR_039746)	promoter-TSS (NR_039746)	-82	NR_039746	100616406		NR_039746		MIR4521	-	microRNA 4521	ncRNA
19-PTNLD28-TUMOR_peak_34394	chr15	72767447	72767614	+	16.89937	NA	intron (NM_005744, intron 1 of 13)	CpG	863	NM_005744	25820	Hs.268787	NM_005744	HPRD:05730	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_51955	chr2	30569361	30569610	+	16.89937	NA	promoter-TSS (NR_122048)	promoter-TSS (NR_122048)	-27	NR_122048	285043	Hs.429119	NR_122048		LOC285043	-	uncharacterized LOC285043	ncRNA
19-PTNLD28-TUMOR_peak_60323	chr20	25529679	25530059	+	16.89633	NA	intron (NM_025176, intron 1 of 23)	intron (NM_025176, intron 1 of 23)	36284	NM_025176	22981	Hs.631508	NM_025176	HPRD:11120	NINL	NLP|dJ691N24.1	ninein-like	protein-coding
19-PTNLD28-TUMOR_peak_91069	chr7	5405640	5405898	+	16.89633	NA	intron (NM_001080495, intron 11 of 29)	MER20|DNA|hAT-Charlie	57408	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_17351	chr11	14051530	14051854	+	16.89633	NA	intron (NM_006108, intron 2 of 15)	intron (NM_006108, intron 2 of 15)	67508	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_65161	chr22	32042590	32042930	+	16.89633	NA	Intergenic	Intergenic	-15950	NM_014338	23761	Hs.420559	NM_014338	HPRD:17854	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_56477	chr2	158225446	158225654	+	16.89633	NA	Intergenic	L1PA2|LINE|L1	-41404	NM_001009959	57471	Hs.443894	NM_020711	HPRD:13838	ERMN	JN|KIAA1189|ermin	ermin, ERM-like protein	protein-coding
19-PTNLD28-TUMOR_peak_29158	chr13	113864273	113864472	+	16.89120	NA	exon (NM_001008895, exon 2 of 20)	exon (NM_001008895, exon 2 of 20)	553	NM_001008895	8451	Hs.339735	NM_003589	HPRD:07218	CUL4A	-	cullin 4A	protein-coding
19-PTNLD28-TUMOR_peak_67197	chr3	24276753	24276993	+	16.89120	NA	intron (NM_000461, intron 2 of 9)	intron (NM_000461, intron 2 of 9)	84058	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
19-PTNLD28-TUMOR_peak_33998	chr15	65186964	65187186	+	16.88994	NA	Intergenic	Intergenic	-17026	NM_182703	348094	Hs.207157	NM_182703	HPRD:14178	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_7708	chr1	161531198	161531372	+	16.88784	NA	Intergenic	MIR3|SINE|MIR	-10872	NM_001127593	2214	Hs.372679	NM_000569	HPRD:00903	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3|IMD20	Fc fragment of IgG, low affinity IIIa, receptor (CD16a)	protein-coding
19-PTNLD28-TUMOR_peak_10594	chr1	228187174	228187365	+	16.88784	NA	Intergenic	Intergenic	-7454	NM_033131	89780	Hs.336930	NM_033131	HPRD:05897	WNT3A	-	wingless-type MMTV integration site family, member 3A	protein-coding
19-PTNLD28-TUMOR_peak_31256	chr14	74300294	74300536	+	16.88784	NA	Intergenic	Intergenic	-18119	NM_001146154	145482	Hs.632344	NM_152444	HPRD:09782	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_60872	chr20	35943849	35944407	+	16.88784	NA	intron (NM_001003897, intron 2 of 2)	intron (NM_001003897, intron 2 of 2)	26077	NM_022077	63905	Hs.6126	NM_022077	HPRD:14356	MANBAL	-	mannosidase, beta A, lysosomal-like	protein-coding
19-PTNLD28-TUMOR_peak_55874	chr2	134599563	134599827	+	16.88784	NA	Intergenic	Intergenic	-273664	NM_207363	344148	Hs.537329	NM_207363	HPRD:16936	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_27025	chr12	125348203	125348518	+	16.88256	NA	5' UTR (NM_005505, exon 1 of 13)	5' UTR (NM_005505, exon 1 of 13)	159	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_53448	chr2	72442015	72442191	+	16.88256	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-67112	NM_019885	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_61233	chr20	42953078	42953412	+	16.88256	NA	Intergenic	Intergenic	-12553	NM_178491	140902	Hs.580807	NM_178491		R3HDML	dJ881L22.3	R3H domain containing-like	protein-coding
19-PTNLD28-TUMOR_peak_100996	chr8	131573642	131573852	+	16.88256	NA	Intergenic	Intergenic	-117841	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_21247	chr11	113448631	113448800	+	16.88256	NA	Intergenic	Intergenic	-102714	NM_000795	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_62286	chr20	56082585	56082850	+	16.88126	NA	exon (NM_001269048, exon 6 of 6)	exon (NM_001269048, exon 6 of 6)	17206	NM_001269041	140690	Hs.131543	NM_080618	HPRD:09512	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor (zinc finger protein)-like	protein-coding
19-PTNLD28-TUMOR_peak_96718	chr7	157146398	157146517	+	16.88126	NA	intron (NM_058246, intron 1 of 9)	AluJb|SINE|Alu	16746	NM_058246	10049	Hs.490745	NM_005494	HPRD:07107	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ (Hsp40) homolog, subfamily B, member 6	protein-coding
19-PTNLD28-TUMOR_peak_40938	chr17	29864906	29865278	+	16.88126	NA	3' UTR (NM_032932, exon 15 of 15)	3' UTR (NM_032932, exon 15 of 15)	3191	NR_039877	100616248		NR_039877	miRBase:MI0017361	MIR4724	-	microRNA 4724	ncRNA
19-PTNLD28-TUMOR_peak_88518	chr6	82958201	82958429	+	16.87735	NA	promoter-TSS (NM_001300906)	promoter-TSS (NM_001300906)	-844	NM_001300906	25998	Hs.306425	NM_015525	HPRD:12105	IBTK	BTBD26|BTKI	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_7195	chr1	155242659	155242885	+	16.87431	NA	intron (NM_003993, intron 1 of 12)	intron (NM_003993, intron 1 of 12)	548	NM_001294339	1196	Hs.73986	NM_001291	HPRD:04289	CLK2	-	CDC-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_73805	chr4	1161032	1161342	+	16.87374	NA	3' UTR (NM_001199021, exon 8 of 8)	3' UTR (NM_001199021, exon 8 of 8)	5470	NM_012445	10417	Hs.302963	NM_012445	HPRD:16174	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_70501	chr3	126500793	126501312	+	16.87297	NA	intron (NM_032343, intron 4 of 7)	intron (NM_032343, intron 4 of 7)	77989	NM_032343	84303	Hs.518119	NM_032343	HPRD:13047	CHCHD6	CHCM1|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_69891	chr3	113465577	113466178	+	16.87070	NA	promoter-TSS (NM_025146)	promoter-TSS (NM_025146)	11	NM_001690	523	Hs.477155	NM_001690	HPRD:06120	ATP6V1A	ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1	ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A	protein-coding
19-PTNLD28-TUMOR_peak_101598	chr8	144302582	144302765	+	16.86884	NA	Intergenic	Intergenic	7605	NM_178172	338328	Hs.426410	NM_178172	HPRD:17347	GPIHBP1	GPI-HBP1	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63639	chr21	42485266	42485783	+	16.86367	NA	Intergenic	Intergenic	34467	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_7047	chr1	154185855	154185986	+	16.86367	NA	intron (NM_138740, intron 2 of 4)	intron (NM_138740, intron 2 of 4)	-6728	NM_001127320	9898	Hs.490551	NM_014847	HPRD:06665	UBAP2L	NICE-4	ubiquitin associated protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_36673	chr16	20146504	20146824	+	16.86367	NA	Intergenic	Intergenic	-61564	NM_001002911	124274	Hs.446875	NM_001002911		GPR139	GPRg1|PGR3	G protein-coupled receptor 139	protein-coding
19-PTNLD28-TUMOR_peak_71405	chr3	142364388	142364554	+	16.86367	NA	intron (NM_002670, intron 1 of 15)	intron (NM_002670, intron 1 of 15)	-11268	NM_001172312	5357	Hs.203637	NM_002670	HPRD:04110	PLS1	-	plastin 1	protein-coding
19-PTNLD28-TUMOR_peak_29319	chr14	20895433	20895566	+	16.86367	NA	Intergenic	Intergenic	8302	NM_001109997	123103	Hs.556014	NM_001109997	ENSG00000185271	KLHL33	-	kelch-like family member 33	protein-coding
19-PTNLD28-TUMOR_peak_45614	chr18	45973029	45973234	+	16.86367	NA	Intergenic	Intergenic	-92296	NM_014772	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_106357	chr9	132194780	132195220	+	16.85667	NA	Intergenic	Intergenic	-55939	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
19-PTNLD28-TUMOR_peak_601	chr1	9406102	9406499	+	16.85667	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	53359	NM_025106	80176	Hs.8261	NM_025106	HPRD:18106	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_48308	chr19	24216951	24217117	+	16.85667	NA	intron (NM_001278663, intron 1 of 2)	intron (NM_001278663, intron 1 of 2)	827	NM_001278677	9534	Hs.434406	NM_004876	HPRD:05304	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
19-PTNLD28-TUMOR_peak_95359	chr7	131192756	131193077	+	16.85667	NA	intron (NM_001018111, intron 5 of 8)	intron (NM_001018111, intron 5 of 8)	48460	NM_005397	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_21323	chr11	114956607	114956850	+	16.85388	NA	Intergenic	Intergenic	407528	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_90751	chr7	579418	579626	+	16.84705	NA	Intergenic	Intergenic	19494	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	ncRNA
19-PTNLD28-TUMOR_peak_36597	chr16	18967392	18967711	+	16.84344	NA	Intergenic	LTR19C|LTR|ERV1	-27705	NM_024847	79905	Hs.187377	NM_024847	HPRD:15517	TMC7	-	transmembrane channel-like 7	protein-coding
19-PTNLD28-TUMOR_peak_17128	chr11	11004401	11004587	+	16.84344	NA	Intergenic	Intergenic	124730	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38452	chr16	68834253	68834616	+	16.84344	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	-43075	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_36488	chr16	15489512	15489680	+	16.84344	NA	promoter-TSS (NM_173803)	promoter-TSS (NM_173803)	-15	NM_173803	255027	Hs.720673	NM_173803		MPV17L	M-LPH|MLPH1|MLPH2|MPV17L1	MPV17 mitochondrial membrane protein-like	protein-coding
19-PTNLD28-TUMOR_peak_109772	chrX	150250885	150251125	+	16.84344	NA	Intergenic	CpG	-85689	NR_036256	100422930		NR_036256	miRBase:MI0015902	MIR4330	-	microRNA 4330	ncRNA
19-PTNLD28-TUMOR_peak_79207	chr5	20972594	20972973	+	16.84344	NA	Intergenic	Intergenic	-396801	NM_001291956	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_99097	chr8	68864528	68864855	+	16.84344	NA	promoter-TSS (NM_025170)	promoter-TSS (NM_025170)	88	NM_025170	80243	Hs.591867	NM_024870		PREX2	6230420N16Rik|DEP.2|DEPDC2|P-REX2|PPP1R129	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding
19-PTNLD28-TUMOR_peak_69490	chr3	101901096	101901306	+	16.84344	NA	Intergenic	Intergenic	241498	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_3734	chr1	56599579	56599898	+	16.84334	NA	Intergenic	Intergenic	445519	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_44727	chr18	13824051	13824291	+	16.84334	NA	Intergenic	CpG	-1372	NM_005913	4161	Hs.248145	NM_005913	HPRD:08965	MC5R	MC2	melanocortin 5 receptor	protein-coding
19-PTNLD28-TUMOR_peak_77601	chr4	152597593	152597805	+	16.84334	NA	intron (NM_004564, intron 11 of 12)	intron (NM_004564, intron 11 of 12)	84476	NM_004564	5188	Hs.119316	NM_004564	HPRD:04706	GATB	PET112|PET112L	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_3917	chr1	61340468	61340749	+	16.84334	NA	Intergenic	L2c|LINE|L2	-49352	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_4640	chr1	86146887	86147046	+	16.84334	NA	intron (NM_017953, intron 5 of 9)	intron (NM_017953, intron 5 of 9)	27150	NM_001170670	54680	Hs.5111	NM_017953	HPRD:08630	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger, HIT-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_92420	chr7	47375785	47376016	+	16.84334	NA	intron (NM_022748, intron 20 of 30)	MER63D|DNA|hAT-Blackjack	245842	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_59228	chr2	241144859	241145074	+	16.84334	NA	Intergenic	Intergenic	-64893	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_26114	chr12	108513111	108513304	+	16.84334	NA	Intergenic	MER54B|LTR|ERVL	-10304	NM_014653	9671	Hs.143591	NM_014653	HPRD:17196	WSCD2	-	WSC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_106475	chr9	134225554	134225725	+	16.84334	NA	Intergenic	L2b|LINE|L2	60558	NM_032728	84814	Hs.134292	NM_032728	HPRD:12972	PPAPDC3	C9orf67|NET39	phosphatidic acid phosphatase type 2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_89212	chr6	116531970	116532522	+	16.84334	NA	intron (NM_152729, intron 6 of 11)	MLT1G|LTR|ERVL-MaLR	43015	NM_021648	23270	Hs.284141	NM_021648	HPRD:18236	TSPYL4	dJ486I3.2	TSPY-like 4	protein-coding
19-PTNLD28-TUMOR_peak_22673	chr12	5606587	5606787	+	16.83783	NA	Intergenic	Intergenic	3389	NM_002527	4908	Hs.99171	NM_002527	HPRD:01219	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
19-PTNLD28-TUMOR_peak_93285	chr7	73808095	73808222	+	16.83783	NA	intron (NM_003388, intron 13 of 16)	intron (NM_003388, intron 13 of 16)	-59962	NM_005685	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_104351	chr9	90112432	90113030	+	16.83421	NA	promoter-TSS (NM_001288729)	promoter-TSS (NM_001288729)	135	NM_001288730	1612	Hs.380277	NM_004938	HPRD:02902	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_55610	chr2	129230809	129231548	+	16.83200	NA	Intergenic	Intergenic	-155007	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_28251	chr13	50656780	50656932	+	16.83200	NA	intron (NR_002605, intron 1 of 1)	intron (NR_002605, intron 1 of 1)	551	NR_109973	10301	Hs.591229	NM_005887	HPRD:16150	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_53108	chr2	65100643	65100840	+	16.82915	NA	Intergenic	Intergenic	-9976	NR_110224	101927438	Hs.580313	NR_110224		LOC101927438	-	uncharacterized LOC101927438	ncRNA
19-PTNLD28-TUMOR_peak_91768	chr7	28613614	28613812	+	16.82915	NA	intron (NM_182898, intron 5 of 10)	intron (NM_182898, intron 5 of 10)	-112008	NM_001011666	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_103950	chr9	78994533	78994801	+	16.82915	NA	Intergenic	Intergenic	14777	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_9979	chr1	212605698	212605851	+	16.82915	NA	promoter-TSS (NR_026598)	promoter-TSS (NR_026598)	-455	NR_026598	29937	Hs.461787	NM_013349	HPRD:11603	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_32019	chr14	100219203	100219369	+	16.82915	NA	Intergenic	MIRb|SINE|MIR	-40459	NM_004434	2009	Hs.12451	NM_004434	HPRD:03613	EML1	ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_21120	chr11	111412141	111412321	+	16.81684	NA	intron (NM_178834, intron 1 of 6)	intron (NM_178834, intron 1 of 6)	998	NM_178834	143903	Hs.503831	NM_178834	HPRD:17299	LAYN	-	layilin	protein-coding
19-PTNLD28-TUMOR_peak_50669	chr1_gl000192_random	243652	243776	+	16.81452	NA	intron (NR_103556, intron 17 of 45)	intron (NR_103556, intron 17 of 45)	163796	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_10270	chr1	223317213	223317535	+	16.81067	NA	promoter-TSS (NM_003268)	promoter-TSS (NM_003268)	-750	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_6939	chr1	153316698	153316951	+	16.81067	NA	intron (NM_020393, intron 4 of 8)	LTR16C|LTR|ERVL	4198	NM_020393	57115	Hs.58356	NM_020393	HPRD:16298	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB	peptidoglycan recognition protein 4	protein-coding
19-PTNLD28-TUMOR_peak_95140	chr7	128379767	128379993	+	16.80712	NA	intron (NR_074086, intron 1 of 4)	intron (NR_074086, intron 1 of 4)	534	NM_001199671	813	Hs.7753	NM_001219		CALU	-	calumenin	protein-coding
19-PTNLD28-TUMOR_peak_6614	chr1	149680034	149680251	+	16.80273	NA	Intergenic	Intergenic	-74108	NM_000566	2209	Hs.77424	NM_000566	HPRD:00904	FCGR1A	CD64|CD64A|FCRI|IGFR1	Fc fragment of IgG, high affinity Ia, receptor (CD64)	protein-coding
19-PTNLD28-TUMOR_peak_41784	chr17	43226644	43226797	+	16.80261	NA	exon (NM_006460, exon 1 of 1)	exon (NM_006460, exon 1 of 1)	2036	NM_006460	10614	Hs.586945	NM_006460	HPRD:09544	HEXIM1	CLP1|EDG1|HIS1|MAQ1	hexamethylene bis-acetamide inducible 1	protein-coding
19-PTNLD28-TUMOR_peak_24368	chr12	52888417	52888634	+	16.80261	NA	Intergenic	Intergenic	-1344	NM_005554	3853	Hs.700779	NM_005554	HPRD:01011	KRT6A	CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3	keratin 6A	protein-coding
19-PTNLD28-TUMOR_peak_99946	chr8	105235339	105235672	+	16.79926	NA	promoter-TSS (NM_001282882)	promoter-TSS (NM_001282882)	-58	NM_001282882	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_46874	chr19	5913968	5914303	+	16.79926	NA	promoter-TSS (NM_080590)	promoter-TSS (NM_080590)	-58	NM_004058	828	Hs.584744	NM_004058		CAPS	CAPS1	calcyphosine	protein-coding
19-PTNLD28-TUMOR_peak_70205	chr3	123005217	123005357	+	16.79926	NA	intron (NM_001199642, intron 20 of 20)	intron (NM_001199642, intron 20 of 20)	84513	NM_012430	26984	Hs.477361	NM_012430		SEC22A	SEC22L2	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_18822	chr11	60828865	60829323	+	16.79926	NA	Intergenic	Intergenic	-40836	NM_014207	921	Hs.58685	NM_014207	HPRD:01078	CD5	LEU1|T1	CD5 molecule	protein-coding
19-PTNLD28-TUMOR_peak_26596	chr12	119617506	119617727	+	16.79926	NA	intron (NM_014365, intron 1 of 2)	intron (NM_014365, intron 1 of 2)	1021	NM_014365	26353	Hs.400095	NM_014365	HPRD:06420	HSPB8	CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22	heat shock 22kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_77995	chr4	169753110	169753592	+	16.79926	NA	intron (NM_001166110, intron 1 of 11)	CpG	195	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_60564	chr20	31960289	31960481	+	16.79926	NA	intron (NM_001278167, intron 10 of 13)	intron (NM_001278167, intron 10 of 13)	28990	NM_016082	51654	Hs.435952	NM_016082	HPRD:12189	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108755	chrX	73512344	73512628	+	16.79926	NA	intron (NR_028379, intron 1 of 6)	CpG	923	NR_028379	100302692	Hs.349570	NR_028379	ENSG00000230590	FTX	LINC00182|MIR374AHG|NCRNA00182	FTX transcript, XIST regulator (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_86381	chr6	29571855	29572026	+	16.79926	NA	intron (NM_001470, intron 22 of 22).5	LTR16A1|LTR|ERVL	16257	NM_007160	7932	Hs.529493	NM_007160	HPRD:08367	OR2H2	FAT11|OLFR2|OLFR42B|OR2H3|dJ271M21.2|hs6M1-12	olfactory receptor, family 2, subfamily H, member 2	protein-coding
19-PTNLD28-TUMOR_peak_64464	chr22	20850799	20850973	+	16.79663	NA	promoter-TSS (NM_032775)	promoter-TSS (NM_032775)	-716	NM_032775	84861	Hs.517419	NM_032775	HPRD:07858	KLHL22	KELCHL	kelch-like family member 22	protein-coding
19-PTNLD28-TUMOR_peak_71327	chr3	140999572	140999857	+	16.79663	NA	intron (NM_152282, intron 6 of 7)	intron (NM_152282, intron 6 of 7)	-43341	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
19-PTNLD28-TUMOR_peak_99689	chr8	100872177	100872328	+	16.78254	NA	intron (NM_152564, intron 57 of 61)	intron (NM_152564, intron 57 of 61)	33990	NM_004374	1345	Hs.351875	NM_004374	HPRD:00494	COX6C	-	cytochrome c oxidase subunit VIc	protein-coding
19-PTNLD28-TUMOR_peak_2919	chr1	42845607	42845719	+	16.78254	NA	promoter-TSS (NM_173642)	promoter-TSS (NM_173642)	-805	NM_173642	284716	Hs.420244	NM_173642	HPRD:14656	RIMKLA	FAM80A|NAAGS|NAAGS-II	ribosomal modification protein rimK-like family member A	protein-coding
19-PTNLD28-TUMOR_peak_35329	chr15	93605205	93605374	+	16.78254	NA	intron (NM_001166286, intron 1 of 2)	intron (NM_001166286, intron 1 of 2)	11100	NM_001166286	56963	Hs.271277	NM_020211	HPRD:09560	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
19-PTNLD28-TUMOR_peak_35201	chr15	90858959	90859204	+	16.78254	NA	Intergenic	Intergenic	33598	NR_028287	23766	Hs.592014	NR_028287		GABARAPL3	ATG8D	GABA(A) receptors associated protein like 3, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_84385	chr5	177573084	177573229	+	16.78254	NA	exon (NM_001288794, exon 9 of 12)	exon (NM_001288794, exon 9 of 12)	7805	NM_017838	55651	Hs.744074	NM_017838	HPRD:07570	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_43023	chr17	64900884	64901279	+	16.78254	NA	Intergenic	Intergenic	27690	NM_145811	27091	Hs.278907	NM_014404	HPRD:05912	CACNG5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_102457	chr9	21688779	21688974	+	16.77959	NA	Intergenic	Intergenic	-113759	NM_002451	4507	Hs.193268	NM_002451	HPRD:01134	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
19-PTNLD28-TUMOR_peak_85357	chr6	11496547	11496680	+	16.77932	NA	Intergenic	Intergenic	-41847	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_93057	chr7	69924657	69924825	+	16.77932	NA	intron (NM_001127231, intron 5 of 17)	intron (NM_001127231, intron 5 of 17)	-672782	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_50278	chr19	54706015	54706147	+	16.77928	NA	intron (NM_001013, intron 3 of 4)	AluSz|SINE|Alu	1355	NM_001013	6203	Hs.467284	NM_001013	HPRD:04696	RPS9	S9	ribosomal protein S9	protein-coding
19-PTNLD28-TUMOR_peak_57582	chr2	196228876	196229033	+	16.77569	NA	Intergenic	Intergenic	-292578	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_50598	chr19	59098737	59098878	+	16.77569	NA	Intergenic	Intergenic	12041	NR_026052	65996	Hs.541177	NM_023939	HPRD:14527	CENPBD1P1	-	CENPBD1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_84146	chr5	174069882	174070153	+	16.77569	NA	Intergenic	Intergenic	-81558	NM_002449	4488	Hs.89404	NM_002449	HPRD:00421	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_27954	chr13	41309507	41309703	+	16.77569	NA	intron (NM_005830, intron 6 of 6)	L1PA2|LINE|L1	-7594	NR_031723	100313896		NR_031723	miRBase:MI0008190	MIR320D1	MIR320D-1|MIRN320D1	microRNA 320d-1	ncRNA
19-PTNLD28-TUMOR_peak_57489	chr2	191726172	191726344	+	16.77252	NA	Intergenic	Intergenic	-19289	NM_001256310	2744	Hs.116448	NM_014905	HPRD:00700	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
19-PTNLD28-TUMOR_peak_90149	chr6	155253929	155254097	+	16.77252	NA	Intergenic	Intergenic	-157410	NM_012454	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_107377	chrX	2517044	2517248	+	16.77252	NA	Intergenic	MER41B|LTR|ERV1	-10086	NR_106737	102464837		NR_106737		MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
19-PTNLD28-TUMOR_peak_110113	chrY	2467044	2467248	+	16.77252	NA	Intergenic	MER41B|LTR|ERV1	-10086	NR_106737	102464837		NR_106737		MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
19-PTNLD28-TUMOR_peak_90539	chr6	167785435	167785564	+	16.77252	NA	Intergenic	Intergenic	12499	NM_004610	6953	Hs.351	NM_004610		TCP10	TCP10A	t-complex 10	protein-coding
19-PTNLD28-TUMOR_peak_39717	chr17	2689697	2689923	+	16.77252	NA	Intergenic	Intergenic	-9922	NM_015085	23108	Hs.499659	NM_015085	HPRD:17028	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_99465	chr8	90771457	90771742	+	16.77238	NA	intron (NM_003821, intron 1 of 10)	intron (NM_003821, intron 1 of 10)	1624	NM_003821	8767	Hs.103755	NM_003821	HPRD:04585	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_24109	chr12	49524057	49524264	+	16.76818	NA	intron (NM_006082, intron 1 of 3)	CpG	1144	NM_006082	10376	Hs.524390	NM_006082	HPRD:03960	TUBA1B	K-ALPHA-1	tubulin, alpha 1b	protein-coding
19-PTNLD28-TUMOR_peak_19954	chr11	73357276	73357535	+	16.76818	NA	5' UTR (NM_001130033, exon 1 of 7)	5' UTR (NM_001130033, exon 1 of 7)	182	NM_021200	58473	Hs.445489	NM_021200	HPRD:09630	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding
19-PTNLD28-TUMOR_peak_44897	chr18	20934659	20934879	+	16.76387	NA	intron (NM_032933, intron 12 of 14)	intron (NM_032933, intron 12 of 14)	83156	NM_032933	85019	Hs.137562	NM_032933	HPRD:12692	TMEM241	C18orf45|hVVT	transmembrane protein 241	protein-coding
19-PTNLD28-TUMOR_peak_101791	chr8	145903739	145904065	+	16.76387	NA	Intergenic	Intergenic	-65014	NM_025251	80728	Hs.148988	NM_025251	HPRD:17224	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
19-PTNLD28-TUMOR_peak_9051	chr1	197191458	197191751	+	16.76387	NA	intron (NM_001257965, intron 1 of 14)	intron (NM_001257965, intron 1 of 14)	21012	NM_001257965	23418	Hs.126135	NM_012076	HPRD:05019	CRB1	LCA8|RP12	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding
19-PTNLD28-TUMOR_peak_12124	chr10	14227516	14227907	+	16.76387	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	111428	NR_120638	101928453	Hs.650212	NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA
19-PTNLD28-TUMOR_peak_85622	chr6	15969498	15969717	+	16.76387	NA	Intergenic	Intergenic	-159710	NM_013262	29116	Hs.484738	NM_013262	HPRD:17621	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_105336	chr9	112353400	112353549	+	16.76387	NA	Intergenic	Intergenic	-49594	NM_001037293	114299	Hs.591908	NM_053016	HPRD:17817	PALM2	AKAP2	paralemmin 2	protein-coding
19-PTNLD28-TUMOR_peak_48989	chr19	39728488	39728692	+	16.76387	NA	Intergenic	Intergenic	7021	NM_172139	282617	Hs.406744	NM_172139	HPRD:09587	IFNL3	IL-28B|IL28B|IL28C	interferon, lambda 3	protein-coding
19-PTNLD28-TUMOR_peak_3721	chr1	56247663	56247824	+	16.76387	NA	Intergenic	ERVL-int|LTR|ERVL	556429	NR_039618	100616272		NR_039618	miRBase:MI0016759	MIR4422	-	microRNA 4422	ncRNA
19-PTNLD28-TUMOR_peak_29658	chr14	26576068	26576220	+	16.76387	NA	Intergenic	L1PA3|LINE|L1	490816	NM_006491	4857	Hs.31588	NM_002515	HPRD:03693	NOVA1	Nova-1	neuro-oncological ventral antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_54489	chr2	101033629	101034157	+	16.76387	NA	5' UTR (NM_004854, exon 1 of 7)	5' UTR (NM_004854, exon 1 of 7)	237	NM_004854	9486	Hs.516370	NM_004854	HPRD:07332	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_79898	chr5	54191654	54191812	+	16.76387	NA	Intergenic	Intergenic	89681	NM_007036	11082	Hs.129944	NM_007036	HPRD:03310	ESM1	endocan	endothelial cell-specific molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_45036	chr18	25343418	25343568	+	16.76387	NA	Intergenic	Intergenic	413952	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_40558	chr17	19312889	19313184	+	16.76387	NA	Intergenic	MIRb|SINE|MIR	-1455	NM_007148	7732	Hs.189482	NM_007148	HPRD:03140	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
19-PTNLD28-TUMOR_peak_20499	chr11	88117588	88117740	+	16.76387	NA	Intergenic	L1MCc|LINE|L1	-46723	NM_001814	1075	Hs.128065	NM_001814	HPRD:03841	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
19-PTNLD28-TUMOR_peak_88910	chr6	102536501	102536667	+	16.76387	NA	Intergenic	L1PA3|LINE|L1	689723	NM_021956	2898	Hs.98262	NM_021956	HPRD:00692	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate receptor, ionotropic, kainate 2	protein-coding
19-PTNLD28-TUMOR_peak_75617	chr4	71817462	71817669	+	16.76387	NA	intron (NM_001244766, intron 2 of 6)	AluJo|SINE|Alu	-41700	NM_000788	1633	Hs.709	NM_000788	HPRD:00507	DCK	-	deoxycytidine kinase	protein-coding
19-PTNLD28-TUMOR_peak_85825	chr6	20187323	20187537	+	16.75521	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	25265	NR_073465	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16665	chr11	2555095	2555240	+	16.75140	NA	intron (NM_181798, intron 2 of 15)	intron (NM_181798, intron 2 of 15)	72483	NM_181798	3784	Hs.95162	NM_000218	HPRD:06341	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel, KQT-like subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22703	chr12	6178621	6178814	+	16.75140	NA	intron (NM_000552, intron 10 of 51)	intron (NM_000552, intron 10 of 51)	55119	NM_000552	7450	Hs.440848	NM_000552	HPRD:01906	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
19-PTNLD28-TUMOR_peak_22876	chr12	7791328	7791497	+	16.75140	NA	Intergenic	HUERS-P3-int|LTR|ERV1	27090	NM_001644	339	Hs.560	NM_001644	HPRD:02531	APOBEC1	APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_17037	chr11	9384949	9385154	+	16.74282	NA	Intergenic	Intergenic	-21118	NM_006391	10527	Hs.744911	NM_006391	HPRD:09280	IPO7	Imp7|RANBP7	importin 7	protein-coding
19-PTNLD28-TUMOR_peak_16695	chr11	2945748	2945891	+	16.74282	NA	intron (NM_002555, intron 10 of 10)	intron (NM_002555, intron 10 of 10)	4831	NM_003311	7262	Hs.154036	NM_003311	HPRD:03679	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology-like domain, family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_14338	chr10	75532372	75533006	+	16.74282	NA	TTS (NM_198597)	TTS (NM_198597)	640	NM_001284194	170384	Hs.588854	NM_173540	HPRD:13555	FUT11	-	fucosyltransferase 11 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_57129	chr2	177035344	177035579	+	16.73946	NA	intron (NM_006898, intron 2 of 2)	intron (NM_006898, intron 2 of 2)	6656	NM_006898	3232	Hs.93574	NM_006898	HPRD:00863	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
19-PTNLD28-TUMOR_peak_69616	chr3	107818194	107818349	+	16.73543	NA	Intergenic	Intergenic	-8336	NM_001777	961	Hs.446414	NM_001777	HPRD:03017	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
19-PTNLD28-TUMOR_peak_39218	chr16	85753856	85754055	+	16.73543	NA	intron (NM_206967, intron 2 of 3)	intron (NM_206967, intron 2 of 3)	21351	NR_031731	100302261		NR_031731	miRBase:MI0008331	MIR1910	MIRN1910|hsa-mir-1910	microRNA 1910	ncRNA
19-PTNLD28-TUMOR_peak_11178	chr1	237143869	237144078	+	16.73543	NA	Intergenic	L2a|LINE|L2	23745	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
19-PTNLD28-TUMOR_peak_83630	chr5	159894803	159895219	+	16.73543	NA	Intergenic	Intergenic	-6398	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
19-PTNLD28-TUMOR_peak_84551	chr5	180085459	180085783	+	16.73543	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-8997	NM_182925	2324	Hs.646917	NM_002020	HPRD:00636	FLT4	FLT41|LMPH1A|PCL|VEGFR3	fms-related tyrosine kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_65493	chr22	38702143	38702388	+	16.73543	NA	intron (NM_001289912, intron 6 of 14)	L1MC4a|LINE|L1	11148	NM_152221	1454	Hs.474833	NM_001894	HPRD:02919	CSNK1E	CKIepsilon|HCKIE	casein kinase 1, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_45833	chr18	52765088	52765272	+	16.73543	NA	Intergenic	Intergenic	26357	NR_110743	101927229	Hs.638474	NR_110743	ENSG00000267013	LOC101927229	-	uncharacterized LOC101927229	ncRNA
19-PTNLD28-TUMOR_peak_20566	chr11	92174019	92174376	+	16.73543	NA	intron (NM_001008781, intron 1 of 24)	intron (NM_001008781, intron 1 of 24)	88935	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_993	chr1	15733747	15733953	+	16.73395	NA	Intergenic	Intergenic	-2541	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_55049	chr2	113626852	113627072	+	16.73395	NA	Intergenic	Intergenic	-32606	NM_000576	3553	Hs.126256	NM_000576	HPRD:00985	IL1B	IL-1|IL1-BETA|IL1F2	interleukin 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_36655	chr16	19812652	19812777	+	16.73395	NA	intron (NM_153208, intron 8 of 9)	AluJb|SINE|Alu	-83222	NM_001012991	400506	Hs.585209	NM_001012991		KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine-rich nucleolar protein 1	protein-coding
19-PTNLD28-TUMOR_peak_34561	chr15	75566849	75567102	+	16.73395	NA	Intergenic	Intergenic	-8207	NM_001145224	653643	Hs.672474	NM_001145224		GOLGA6D	-	golgin A6 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_22612	chr12	4757694	4758545	+	16.73395	NA	promoter-TSS (NM_001278309)	promoter-TSS (NM_001278309)	94	NM_001278309	10566	Hs.98397	NM_006422	HPRD:05256	AKAP3	AKAP 110|AKAP110|CT82|FSP95|HEL159|PRKA3|SOB1	A kinase (PRKA) anchor protein 3	protein-coding
19-PTNLD28-TUMOR_peak_84122	chr5	173754409	173754590	+	16.73395	NA	Intergenic	Intergenic	-8858	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_86480	chr6	30565211	30565390	+	16.73395	NA	Intergenic	Intergenic	13191	NR_030615	100126314		NR_030615		MIR877	MIRN877|hsa-mir-877|miRNA877	microRNA 877	ncRNA
19-PTNLD28-TUMOR_peak_97640	chr8	22842837	22843033	+	16.73348	NA	Intergenic	LTR14|LTR|ERVK	-1995	NM_001160036	23221	Hs.372688	NM_015178	HPRD:06300	RHOBTB2	DBC2	Rho-related BTB domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83123	chr5	149016489	149016636	+	16.73348	NA	Intergenic	Intergenic	55427	NM_001001669	389337	Hs.256206	NM_001001669	HPRD:13454	ARHGEF37	-	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding
19-PTNLD28-TUMOR_peak_1591	chr1	25558877	25559062	+	16.73027	NA	promoter-TSS (NM_015484)	promoter-TSS (NM_015484)	44	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA-splicing factor	protein-coding
19-PTNLD28-TUMOR_peak_43687	chr17	75826639	75826779	+	16.73027	NA	Intergenic	Intergenic	53460	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	ncRNA
19-PTNLD28-TUMOR_peak_10499	chr1	226521202	226521394	+	16.72279	NA	Intergenic	Intergenic	-23849	NM_001270410	286826	Hs.120817	NM_173083	HPRD:13990	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
19-PTNLD28-TUMOR_peak_95780	chr7	139470894	139471042	+	16.72279	NA	intron (NM_022740, intron 1 of 14)	Tigger10|DNA|TcMar-Tigger	6725	NM_022740	28996	Hs.731417	NM_022740	HPRD:06039	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_64451	chr22	20621671	20621828	+	16.72279	NA	Intergenic	Intergenic	-126656	NM_003426	7625	Hs.517418	NM_003426	HPRD:01928	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
19-PTNLD28-TUMOR_peak_61930	chr20	50211603	50211833	+	16.72170	NA	Intergenic	Intergenic	-32348	NM_001258294	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_61993	chr20	51559821	51560046	+	16.72170	NA	Intergenic	Intergenic	-29013	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_40723	chr17	25646671	25647138	+	16.72170	NA	Intergenic	Intergenic	25798	NM_134265	26118	Hs.446017	NM_015626	HPRD:15680	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27760	chr13	33112450	33112770	+	16.72170	NA	intron (NM_033111, intron 1 of 9)	intron (NM_033111, intron 1 of 9)	322	NM_014887	10443	Hs.507680	NM_014887	HPRD:15119	N4BP2L2	92M18.3|CG005|PFAAP5	NEDD4 binding protein 2-like 2	protein-coding
19-PTNLD28-TUMOR_peak_30749	chr14	64763339	64763649	+	16.72170	NA	intron (NM_001291723, intron 1 of 8)	intron (NM_001291723, intron 1 of 8)	-2366	NM_001437	2100	Hs.660607	NM_001437	HPRD:03390	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2 (ER beta)	protein-coding
19-PTNLD28-TUMOR_peak_78254	chr4	184642395	184642766	+	16.71613	NA	Intergenic	Intergenic	62160	NM_199053	60684	Hs.443240	NM_021942	HPRD:10968	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
19-PTNLD28-TUMOR_peak_83217	chr5	150017230	150017415	+	16.71535	NA	intron (NM_001166208, intron 2 of 2)	intron (NM_001166208, intron 2 of 2)	-2885	NM_007286	11346	Hs.435228	NM_007286	HPRD:12179	SYNPO	-	synaptopodin	protein-coding
19-PTNLD28-TUMOR_peak_90852	chr7	1609581	1609827	+	16.71535	NA	promoter-TSS (NR_021487)	promoter-TSS (NR_021487)	-5	NR_027328	114796	Hs.436146	NR_021487	ENSG00000230487	PSMG3-AS1	-	PSMG3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_39956	chr17	7183995	7184400	+	16.70629	NA	promoter-TSS (NM_001042)	promoter-TSS (NM_001042)	-857	NM_001042	6517	Hs.380691	NM_001042	HPRD:00688	SLC2A4	GLUT4	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_67600	chr3	39174654	39174930	+	16.70629	NA	intron (NM_001105513, intron 19 of 27)	intron (NM_001105513, intron 19 of 27)	-4905	NR_106880	102466743		NR_106880		MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
19-PTNLD28-TUMOR_peak_72083	chr3	159943207	159943941	+	16.70629	NA	exon (NM_001168214, exon 1 of 1)	exon (NM_001168214, exon 1 of 1)	151	NM_001168214	401097	Hs.729755	NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
19-PTNLD28-TUMOR_peak_87007	chr6	35359465	35359630	+	16.70619	NA	intron (NM_001171819, intron 2 of 6)	MIR3|SINE|MIR	49212	NM_177435	5467	Hs.696032	NM_006238	HPRD:02679	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
19-PTNLD28-TUMOR_peak_103128	chr9	40175949	40176090	+	16.70194	NA	Intergenic	Intergenic	275673	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_40821	chr17	27295311	27295639	+	16.70194	NA	intron (NM_001290202, intron 4 of 16)	intron (NM_001290202, intron 4 of 16)	-16967	NM_001290131	57649	Hs.444173	NM_020889	HPRD:15123	PHF12	PF1	PHD finger protein 12	protein-coding
19-PTNLD28-TUMOR_peak_67376	chr3	31212854	31213066	+	16.70194	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-276807	NM_207359	339896	Hs.657052	NM_207359	HPRD:13557	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_81090	chr5	89504354	89504675	+	16.70194	NA	intron (NR_120601, intron 3 of 5)	L1PA2|LINE|L1	81374	NR_120601	101929495	Hs.346679	NR_120601	ENSG00000248555	LINC01339	-	long intergenic non-protein coding RNA 1339	ncRNA
19-PTNLD28-TUMOR_peak_63520	chr21	39877692	39877835	+	16.70194	NA	intron (NR_111949, intron 3 of 4)	intron (NR_111949, intron 3 of 4)	-7335	NM_182918	2078	Hs.473819	NM_004449	HPRD:01298	ERG	erg-3|p55	v-ets avian erythroblastosis virus E26 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_19704	chr11	69802426	69802628	+	16.70194	NA	Intergenic	Intergenic	107503	NR_120530	101928443	Hs.313468	NR_120529	ENSG00000248844	LOC101928443	-	uncharacterized LOC101928443	ncRNA
19-PTNLD28-TUMOR_peak_21192	chr11	112348664	112348884	+	16.70194	NA	Intergenic	Intergenic	-4181	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
19-PTNLD28-TUMOR_peak_36617	chr16	19285581	19285926	+	16.70194	NA	Intergenic	ERVL-int|LTR|ERVL	-11352	NM_001256720	728276	Hs.632180	NM_001256720		CLEC19A	-	C-type lectin domain family 19, member A	protein-coding
19-PTNLD28-TUMOR_peak_65535	chr22	39227267	39227449	+	16.70194	NA	intron (NM_014293, intron 1 of 4)	AluJb|SINE|Alu	12659	NM_014293	23467	Hs.91622	NM_014293	HPRD:14837	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
19-PTNLD28-TUMOR_peak_11471	chr1	245935218	245935536	+	16.70194	NA	intron (NM_022743, intron 10 of 11)	intron (NM_022743, intron 10 of 11)	617090	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_65125	chr22	31556089	31556272	+	16.70194	NA	promoter-TSS (NR_024210)	promoter-TSS (NR_024210)	42	NM_152267	91445	Hs.517553	NM_152267	HPRD:08790	RNF185	-	ring finger protein 185	protein-coding
19-PTNLD28-TUMOR_peak_47617	chr19	14367047	14367201	+	16.70194	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-50127	NM_014921	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_104202	chr9	86577795	86578056	+	16.69832	NA	Intergenic	Intergenic	-6262	NM_032307	84267	Hs.208914	NM_032307	HPRD:12969	C9orf64	-	chromosome 9 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_101672	chr8	144905745	144905936	+	16.69251	NA	intron (NM_001271097, intron 1 of 9)	intron (NM_001271097, intron 1 of 9)	5439	NM_001271100	22827	Hs.521924	NM_014281	HPRD:18051	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly-U binding splicing factor 60KDa	protein-coding
19-PTNLD28-TUMOR_peak_91567	chr7	22485057	22485370	+	16.68534	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	54688	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_24397	chr12	53199637	53199790	+	16.68495	NA	TTS (NM_002272)	TTS (NM_002272)	8187	NM_002272	3851	Hs.654610	NM_002272	HPRD:00478	KRT4	CK-4|CK4|CYK4|K4|WSN1	keratin 4	protein-coding
19-PTNLD28-TUMOR_peak_75697	chr4	75640993	75641246	+	16.68495	NA	Intergenic	Intergenic	78763	NM_001729	685	Hs.710156	NM_001729		BTC	-	betacellulin	protein-coding
19-PTNLD28-TUMOR_peak_80876	chr5	78415429	78415603	+	16.68495	NA	intron (NM_001713, intron 3 of 7)	MIRb|SINE|MIR	7912	NM_001713	635	Hs.80756	NM_001713	HPRD:04200	BHMT	BHMT1|HEL-S-61p	betaine--homocysteine S-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_101924	chr9	846778	847130	+	16.68495	NA	intron (NM_021951, intron 1 of 4)	intron (NM_021951, intron 1 of 4)	5264	NM_021951	1761	Hs.98586	NM_021951	HPRD:03885	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_86756	chr6	32758202	32758365	+	16.68495	NA	Intergenic	L2a|LINE|L2	26542	NM_002120	3112	Hs.1802	NM_002120	HPRD:08368	HLA-DOB	DOB	major histocompatibility complex, class II, DO beta	protein-coding
19-PTNLD28-TUMOR_peak_8169	chr1	171623591	171623896	+	16.68495	NA	Intergenic	Intergenic	-1970	NM_000261	4653	Hs.436037	NM_000261	HPRD:03387	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	myocilin, trabecular meshwork inducible glucocorticoid response	protein-coding
19-PTNLD28-TUMOR_peak_21721	chr11	122124684	122125118	+	16.68495	NA	Intergenic	Intergenic	-51131	NR_024430	399959	Hs.44098	NR_024430	ENSG00000255248	MIR100HG	AGD1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_25580	chr12	93115485	93115725	+	16.68495	NA	Intergenic	Intergenic	-14660	NM_001004330	440107	Hs.591013	NM_001004330	HPRD:17004	PLEKHG7	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 7	protein-coding
19-PTNLD28-TUMOR_peak_54385	chr2	98744140	98744335	+	16.68495	NA	intron (NM_144992, intron 5 of 27)	intron (NM_144992, intron 5 of 27)	40642	NM_144992	200403	Hs.269977	NM_144992	HPRD:14510	VWA3B	-	von Willebrand factor A domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_55402	chr2	121668551	121668801	+	16.67895	NA	intron (NM_005270, intron 1 of 12)	intron (NM_005270, intron 1 of 12)	113809	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_66014	chr22	46938319	46938439	+	16.67693	NA	Intergenic	Intergenic	-5312	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_63681	chr21	43080404	43080670	+	16.67217	NA	Intergenic	Intergenic	-18925	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
19-PTNLD28-TUMOR_peak_104605	chr9	95417325	95417532	+	16.67217	NA	intron (NM_022755, intron 3 of 12)	intron (NM_022755, intron 3 of 12)	15119	NM_022755	64768	Hs.459896	NM_022755	HPRD:10799	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding
19-PTNLD28-TUMOR_peak_20512	chr11	89051855	89052057	+	16.67217	NA	Intergenic	L1PA2|LINE|L1	140916	NM_000372	7299	Hs.503555	NM_000372	HPRD:06086	TYR	ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3	tyrosinase	protein-coding
19-PTNLD28-TUMOR_peak_20513	chr11	89052214	89052392	+	16.67217	NA	Intergenic	L1PA2|LINE|L1	141263	NM_000372	7299	Hs.503555	NM_000372	HPRD:06086	TYR	ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3	tyrosinase	protein-coding
19-PTNLD28-TUMOR_peak_3612	chr1	54448171	54448520	+	16.67217	NA	Intergenic	L1MEc|LINE|L1	35514	NM_001276395	388633	Hs.439583	NM_001010978		LDLRAD1	-	low density lipoprotein receptor class A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_22440	chr12	1739550	1739811	+	16.67217	NA	intron (NM_032642, intron 1 of 4)	CpG	1268	NM_032642	81029	Hs.306051	NM_030775	HPRD:05899	WNT5B	-	wingless-type MMTV integration site family, member 5B	protein-coding
19-PTNLD28-TUMOR_peak_93993	chr7	94024681	94024987	+	16.67217	NA	intron (NM_000089, intron 1 of 51)	intron (NM_000089, intron 1 of 51)	961	NM_000089	1278	Hs.489142	NM_000089	HPRD:00363	COL1A2	OI4	collagen, type I, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_7878	chr1	165132177	165132415	+	16.67015	NA	Intergenic	Intergenic	193182	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_63794	chr21	44216526	44216827	+	16.67015	NA	Intergenic	MER83C|LTR|ERV1	82709	NM_001260477	10785	Hs.248815	NM_018669	HPRD:09330	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
19-PTNLD28-TUMOR_peak_55705	chr2	131185234	131185465	+	16.67015	NA	non-coding (NR_046260, exon 1 of 4)	non-coding (NR_046260, exon 1 of 4)	770	NR_046259	100216479	Hs.131740	NR_046258		FAR2P2	-	fatty acyl CoA reductase 2 pseudogene 2	ncRNA
19-PTNLD28-TUMOR_peak_44887	chr18	20787535	20787778	+	16.67015	NA	intron (NR_023359, intron 3 of 6)	L2b|LINE|L2	51867	NM_138375	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_82456	chr5	137839568	137839747	+	16.67015	NA	Intergenic	Intergenic	37743	NM_001282185	2107	Hs.483494	NM_004730	HPRD:02616	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
19-PTNLD28-TUMOR_peak_93226	chr7	73319257	73319421	+	16.67015	NA	Intergenic	Intergenic	43850	NM_182504	135886	Hs.647026	NM_182504	HPRD:15662	WBSCR28	-	Williams-Beuren syndrome chromosome region 28	protein-coding
19-PTNLD28-TUMOR_peak_17190	chr11	11988377	11988622	+	16.67015	NA	intron (NM_001018057, intron 5 of 6)	intron (NM_001018057, intron 5 of 6)	41687	NM_001018057	27122	Hs.292156	NM_013253	HPRD:05659	DKK3	REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_87544	chr6	42938801	42939113	+	16.67015	NA	intron (NM_000287, intron 3 of 16)	intron (NM_000287, intron 3 of 16)	8024	NM_000287	5190	Hs.656425	NM_000287	HPRD:03293	PEX6	PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
19-PTNLD28-TUMOR_peak_2279	chr1	34892215	34892371	+	16.66969	NA	Intergenic	Intergenic	249740	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_21387	chr11	116578614	116578797	+	16.66414	NA	Intergenic	Intergenic	65009	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_27720	chr13	31444623	31444953	+	16.66414	NA	Intergenic	Intergenic	-11911	NR_103813	440132	Hs.729493	NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
19-PTNLD28-TUMOR_peak_3271	chr1	47323307	47323593	+	16.66414	NA	intron (NR_002788, intron 9 of 11)	intron (NR_002788, intron 9 of 11)	42697	NR_002788	163720	Hs.591431	NR_002788	ENSG00000154198	CYP4Z2P	-	cytochrome P450, family 4, subfamily Z, polypeptide 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_68152	chr3	49740965	49741156	+	16.66414	NA	intron (NM_022064, intron 21 of 38)	intron (NM_022064, intron 21 of 38)	14110	NM_022064	63891	Hs.553723	NM_022064	HPRD:11499	RNF123	KPC1	ring finger protein 123	protein-coding
19-PTNLD28-TUMOR_peak_109918	chrX	153176566	153176756	+	16.66414	NA	intron (NM_001164741, intron 13 of 22)	intron (NM_001164741, intron 13 of 22)	6132	NM_000054	554	Hs.567240	NM_000054	HPRD:02368	AVPR2	ADHR|DI1|DIR|DIR3|NDI|V2R	arginine vasopressin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_28794	chr13	99161085	99161258	+	16.66163	NA	intron (NM_001032296, intron 2 of 10)	intron (NM_001032296, intron 2 of 10)	13208	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_94174	chr7	98439102	98439340	+	16.66163	NA	Intergenic	Intergenic	28452	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_45788	chr18	49141421	49141952	+	16.66018	NA	Intergenic	Intergenic	223274	NR_040074	100287225	Hs.448920	NR_040074	ENSG00000227115	LOC100287225	-	uncharacterized LOC100287225	ncRNA
19-PTNLD28-TUMOR_peak_71776	chr3	151987688	151987842	+	16.65801	NA	promoter-TSS (NR_027038)	promoter-TSS (NR_027038)	-350	NR_027037	401093	Hs.725347	NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30192	chr14	50467583	50467820	+	16.64976	NA	intron (NM_001012706, intron 1 of 3)	intron (NM_001012706, intron 1 of 3)	6537	NM_001012706	283551	Hs.660867	NM_001012706	HPRD:13397	C14orf182	-	chromosome 14 open reading frame 182	protein-coding
19-PTNLD28-TUMOR_peak_45438	chr18	42915671	42915841	+	16.64665	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	122809	NM_001242692	8170	Hs.710927	NM_007163	HPRD:03366	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 (urea transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_36989	chr16	27651225	27651380	+	16.64665	NA	intron (NM_015202, intron 5 of 27)	intron (NM_015202, intron 5 of 27)	89834	NM_015202	23247	Hs.460459	NM_015202	HPRD:13806	KIAA0556	-	KIAA0556	protein-coding
19-PTNLD28-TUMOR_peak_86489	chr6	30640229	30640965	+	16.64665	NA	exon (NM_003587, exon 1 of 20).4	exon (NM_003587, exon 1 of 20).4	233	NM_001164239	8449	Hs.485060	NM_003587	HPRD:04555	DHX16	DBP2|DDX16|PRO2014|PRP8|PRPF2|Prp2	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding
19-PTNLD28-TUMOR_peak_107809	chrX	23760529	23760750	+	16.63780	NA	intron (NM_001033583, intron 1 of 14)	intron (NM_001033583, intron 1 of 14)	768	NM_001037171	23597	Hs.298885	NM_001033583	HPRD:06438	ACOT9	ACATE2|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
19-PTNLD28-TUMOR_peak_86949	chr6	34579010	34579137	+	16.63693	NA	intron (NM_022758, intron 2 of 3)	intron (NM_022758, intron 2 of 3)	-54963	NM_001252294	25803	Hs.485158	NM_012391	HPRD:12176	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_32839	chr15	31093486	31093615	+	16.63693	NA	Intergenic	Intergenic	-16689	NR_072991	390561	Hs.721293	NR_072991		HERC2P10	-	hect domain and RLD 2 pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_17631	chr11	20389267	20389422	+	16.63693	NA	TTS (NM_001098523)	TTS (NM_001098523)	3657	NM_001098523	10553	Hs.90753	NM_006410	HPRD:09288	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_39412	chr16	88991675	88991898	+	16.63287	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-14661	NM_001290330	100129697	Hs.689377	NM_001290330	ENSG00000205018	LOC100129697	-	uncharacterized LOC100129697	protein-coding
19-PTNLD28-TUMOR_peak_59517	chr20	2723735	2723968	+	16.63191	NA	intron (NM_001110514, intron 7 of 17)	intron (NM_001110514, intron 7 of 17)	50327	NM_001110514	57593	Hs.471955	NM_020833	ENSG00000088881	EBF4	COE4|O/E-4	early B-cell factor 4	protein-coding
19-PTNLD28-TUMOR_peak_85174	chr6	7559998	7560169	+	16.63191	NA	intron (NM_001008844, intron 4 of 23)	intron (NM_001008844, intron 4 of 23)	18213	NM_004415	1832	Hs.519873	NM_004415	HPRD:00513	DSP	DP|DPI|DPII	desmoplakin	protein-coding
19-PTNLD28-TUMOR_peak_62520	chr20	61318697	61318902	+	16.63191	NA	Intergenic	Intergenic	-20826	NR_024470	100127888	Hs.671273	NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22230	chr11	131065887	131066236	+	16.63191	NA	Intergenic	Intergenic	-174310	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_79359	chr5	32642803	32642934	+	16.63191	NA	Intergenic	Intergenic	57263	NM_006713	10923	Hs.229641	NM_006713	HPRD:02737	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_20054	chr11	75039719	75039986	+	16.63191	NA	intron (NM_004041, intron 1 of 15)	intron (NM_004041, intron 1 of 15)	6378	NR_029891	442900		NR_029891		MIR326	MIRN326|hsa-mir-326	microRNA 326	ncRNA
19-PTNLD28-TUMOR_peak_48878	chr19	38768202	38768375	+	16.63191	NA	intron (NM_001166103, intron 1 of 5)	intron (NM_001166103, intron 1 of 5)	13190	NM_021102	10653	Hs.31439	NM_021102	HPRD:05495	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type, 2	protein-coding
19-PTNLD28-TUMOR_peak_68609	chr3	58512411	58512632	+	16.63191	NA	intron (NM_003500, intron 9 of 14)	MIRb|SINE|MIR	10408	NM_003500	8309	Hs.444959	NM_003500	HPRD:09037	ACOX2	BCOX|BRCACOX|BRCOX|THCCox	acyl-CoA oxidase 2, branched chain	protein-coding
19-PTNLD28-TUMOR_peak_31890	chr14	96027396	96027620	+	16.63191	NA	Intergenic	Intergenic	26185	NM_016417	51218	Hs.744943	NM_016417		GLRX5	C14orf87|FLB4739|GRX5|PR01238|PRO1238	glutaredoxin 5	protein-coding
19-PTNLD28-TUMOR_peak_104407	chr9	91145042	91145202	+	16.63002	NA	Intergenic	Intergenic	-4894	NM_145283	158046	Hs.734507	NM_145283	HPRD:12938	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_80398	chr5	67640267	67640478	+	16.63002	NA	Intergenic	Intergenic	51976	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_87479	chr6	42073945	42074267	+	16.63002	NA	exon (NM_001164446, exon 4 of 5)	exon (NM_001164446, exon 4 of 5)	36609	NM_001164446	647024	Hs.444277	NM_001164446	ENSG00000188112	C6orf132	bA7K24.2	chromosome 6 open reading frame 132	protein-coding
19-PTNLD28-TUMOR_peak_71142	chr3	137800896	137801227	+	16.62756	NA	intron (NM_173543, intron 8 of 15)	intron (NM_173543, intron 8 of 15)	31261	NM_001170538	199221	Hs.351403	NM_173543	HPRD:08145	DZIP1L	DZIP2	DAZ interacting zinc finger protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_19853	chr11	71903114	71903293	+	16.61759	NA	promoter-TSS (NM_016729)	promoter-TSS (NM_016729)	30	NM_016729	2348	Hs.73769	NM_000802	HPRD:00638	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
19-PTNLD28-TUMOR_peak_33934	chr15	63773425	63773628	+	16.61759	NA	Intergenic	Intergenic	-23184	NR_046341	9960	Hs.458499	NM_006537		USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_2132	chr1	32807635	32807869	+	16.61759	NA	Intergenic	Intergenic	-5912	NR_052852	65108	Hs.75061	NM_023009	HPRD:04247	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS-like 1	protein-coding
19-PTNLD28-TUMOR_peak_80406	chr5	67834821	67835079	+	16.61759	NA	Intergenic	Intergenic	246554	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_51772	chr2	27906338	27906671	+	16.61679	NA	intron (NM_018158, intron 9 of 13)	MLT1B|LTR|ERVL-MaLR	-19797	NM_001282731	9913	Hs.6232	NM_014860	HPRD:18115	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	suppressor of Ty 7 (S. cerevisiae)-like	protein-coding
19-PTNLD28-TUMOR_peak_17347	chr11	13984010	13984370	+	16.61679	NA	promoter-TSS (NM_006108)	promoter-TSS (NM_006108)	6	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_51022	chr2	10035932	10036100	+	16.61679	NA	intron (NM_005680, intron 8 of 14)	intron (NM_005680, intron 8 of 14)	52445	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_76149	chr4	87776723	87776975	+	16.60918	NA	Intergenic	Intergenic	-6433	NM_197965	345274	Hs.452996	NM_197965	HPRD:11593	SLC10A6	SOAT	solute carrier family 10 (sodium/bile acid cotransporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_32636	chr15	25930103	25930243	+	16.60918	NA	intron (NM_024490, intron 16 of 20)	intron (NM_024490, intron 16 of 20)	163799	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	ncRNA
19-PTNLD28-TUMOR_peak_1898	chr1	29222834	29223025	+	16.60918	NA	intron (NM_001166007, intron 1 of 17)	intron (NM_001166007, intron 1 of 17)	9326	NM_001166007	2035	Hs.175437	NM_004437	HPRD:00558	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19-PTNLD28-TUMOR_peak_15085	chr10	99030399	99030541	+	16.60918	NA	promoter-TSS (NM_001256423)	promoter-TSS (NM_001256423)	-23	NM_001256423	84986	Hs.80305	NM_032900	HPRD:12475	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
19-PTNLD28-TUMOR_peak_86319	chr6	28457678	28457961	+	16.60918	NA	Intergenic	CpG	25751	NM_182701	257202	Hs.448570	NM_182701	HPRD:12132	GPX6	GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1	glutathione peroxidase 6 (olfactory)	protein-coding
19-PTNLD28-TUMOR_peak_51241	chr2	14239740	14239884	+	16.60679	NA	Intergenic	L1PA4|LINE|L1	301270	NR_103814	100499171	Hs.565606	NR_103814	ENSG00000230448	LINC00276	NCRNA00276	long intergenic non-protein coding RNA 276	ncRNA
19-PTNLD28-TUMOR_peak_5663	chr1	114347491	114347627	+	16.60679	NA	intron (NM_018364, intron 1 of 6)	intron (NM_018364, intron 1 of 6)	7511	NM_018364	54665	Hs.486285	NM_018364	HPRD:08561	RSBN1	ROSBIN	round spermatid basic protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11546	chr1	248069847	248070196	+	16.60679	NA	Intergenic	LTR37A|LTR|ERV1	11132	NM_001001957	343171	Hs.269151	NM_001001957	HPRD:17714	OR2W3	OR2W3P|OR2W8P|OST718	olfactory receptor, family 2, subfamily W, member 3	protein-coding
19-PTNLD28-TUMOR_peak_40898	chr17	28690732	28691193	+	16.60679	NA	Intergenic	Intergenic	-14980	NM_001304	1362	Hs.446079	NM_001304	HPRD:04375	CPD	GP180	carboxypeptidase D	protein-coding
19-PTNLD28-TUMOR_peak_76072	chr4	85246094	85246365	+	16.60679	NA	Intergenic	Intergenic	173158	NM_006168	4825	Hs.546270	NM_006168		NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_42376	chr17	53364434	53364796	+	16.60679	NA	intron (NM_002126, intron 2 of 3)	intron (NM_002126, intron 2 of 3)	22294	NM_002126	3131	Hs.196952	NM_002126	HPRD:00797	HLF	-	hepatic leukemia factor	protein-coding
19-PTNLD28-TUMOR_peak_70340	chr3	124545703	124545866	+	16.60679	NA	intron (NM_002213, intron 5 of 14)	intron (NM_002213, intron 5 of 14)	60360	NM_002213	3693	Hs.536663	NM_002213	HPRD:00949	ITGB5	-	integrin, beta 5	protein-coding
19-PTNLD28-TUMOR_peak_68690	chr3	62119831	62120265	+	16.60679	NA	intron (NM_002841, intron 6 of 29)	intron (NM_002841, intron 6 of 29)	184574	NR_038281	100506994	Hs.656620	NR_038281	ENSG00000241472	PTPRG-AS1	-	PTPRG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_79637	chr5	40587437	40587943	+	16.60679	NA	Intergenic	LTR82A|LTR|ERVL	-92342	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_40712	chr17	25372086	25372212	+	16.60679	NA	Intergenic	L1PA2|LINE|L1	248873	NR_039748	100616277		NR_039748	miRBase:MI0016889	MIR4522	-	microRNA 4522	ncRNA
19-PTNLD28-TUMOR_peak_109008	chrX	102565811	102566095	+	16.60679	NA	promoter-TSS (NM_032621)	promoter-TSS (NM_032621)	-15	NM_001168401	84707	Hs.398989	NM_032621	HPRD:06484	BEX2	BEX1|DJ79P11.1	brain expressed X-linked 2	protein-coding
19-PTNLD28-TUMOR_peak_103090	chr9	39078772	39079052	+	16.60679	NA	exon (NM_033655, exon 22 of 24)	exon (NM_033655, exon 22 of 24)	209388	NM_033655	79937	Hs.128474	NM_033655	HPRD:10842	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_29545	chr14	24483289	24483464	+	16.60679	NA	intron (NR_102687, intron 1 of 3)	HERVK-int|LTR|ERVK	7158	NR_102688	728635	Hs.647569	NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase (SDR family) member 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_78801	chr5	8897398	8897695	+	16.60679	NA	Intergenic	LTR41|LTR|ERVL	57702	NR_109932	101929284	Hs.403715	NR_109932	ENSG00000250198	LOC101929284	-	uncharacterized LOC101929284	ncRNA
19-PTNLD28-TUMOR_peak_47631	chr19	14477563	14477779	+	16.60543	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-14285	NM_078481	976	Hs.466039	NM_001784	HPRD:03130	CD97	TM7LN1	CD97 molecule	protein-coding
19-PTNLD28-TUMOR_peak_38261	chr16	66929230	66929357	+	16.59934	NA	Intergenic	Intergenic	14910	NM_020786	57546	Hs.632214	NM_020786	HPRD:15112	PDP2	PPM2C2	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_104600	chr9	95087351	95087743	+	16.59934	NA	promoter-TSS (NM_001286969)	promoter-TSS (NM_001286969)	-203	NM_001286969	401541	Hs.713775	NM_001012267		CENPP	CENP-P	centromere protein P	protein-coding
19-PTNLD28-TUMOR_peak_43507	chr17	73978616	73978789	+	16.59698	NA	intron (NM_001113324, intron 1 of 3)	AluJo|SINE|Alu	-3187	NM_001185039	51	Hs.464137	NM_004035	HPRD:02030	ACOX1	ACOX|PALMCOX|SCOX	acyl-CoA oxidase 1, palmitoyl	protein-coding
19-PTNLD28-TUMOR_peak_33345	chr15	43985511	43986210	+	16.59539	NA	intron (NM_001015001, intron 1 of 9)	CpG	776	NM_001015001	548596	Hs.654988	NM_001015001	HPRD:18683	CKMT1A	CKMT1	creatine kinase, mitochondrial 1A	protein-coding
19-PTNLD28-TUMOR_peak_466	chr1	7727698	7727877	+	16.58914	NA	intron (NM_015215, intron 9 of 22)	intron (NM_015215, intron 9 of 22)	-103542	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_7319	chr1	156519229	156519431	+	16.58914	NA	intron (NM_178229, intron 16 of 37)	AluJb|SINE|Alu	23066	NM_178229	128239	Hs.591495	NM_178229	HPRD:11051	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
19-PTNLD28-TUMOR_peak_85430	chr6	12585228	12585547	+	16.58914	NA	Intergenic	Intergenic	-131650	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_83200	chr5	149866178	149866447	+	16.58914	NA	promoter-TSS (NR_105061)	promoter-TSS (NR_105061)	-757	NR_105061	102546298	Hs.570892	NR_105061		LOC102546298	-	uncharacterized LOC102546298	ncRNA
19-PTNLD28-TUMOR_peak_91796	chr7	29327111	29327271	+	16.58591	NA	intron (NM_001293072, intron 1 of 12)	MIR|SINE|MIR	-78605	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
19-PTNLD28-TUMOR_peak_33464	chr15	46184517	46184708	+	16.58591	NA	Intergenic	L3|LINE|CR1	257674	NM_021199	58472	Hs.511251	NM_021199	HPRD:18102	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_109615	chrX	138007605	138007815	+	16.58591	NA	intron (NM_001139500, intron 2 of 6)	intron (NM_001139500, intron 2 of 6)	-57993	NM_001139502	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_59628	chr20	4493629	4493841	+	16.58591	NA	Intergenic	Intergenic	-173062	NM_001080121	5621	Hs.472010	NM_000311	HPRD:01453	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
19-PTNLD28-TUMOR_peak_108080	chrX	44259940	44260119	+	16.58591	NA	Intergenic	Intergenic	-57106	NM_025184	80258	Hs.521953	NM_025184		EFHC2	MRX74|dJ1158H2.1	EF-hand domain (C-terminal) containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24497	chr12	54052821	54053050	+	16.58591	NA	Intergenic	Intergenic	17174	NM_005176	517	Hs.524464	NM_005176	HPRD:04429	ATP5G2	ATP5A	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_51862	chr2	29044345	29044481	+	16.58591	NA	intron (NM_001008779, intron 2 of 4)	intron (NM_001008779, intron 2 of 4)	5550	NM_001008779	245711	Hs.511956	NM_182756	HPRD:18095	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
19-PTNLD28-TUMOR_peak_80784	chr5	75823479	75823873	+	16.58591	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-19558	NM_001285460	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_100213	chr8	117659139	117659255	+	16.58591	NA	intron (NM_003756, intron 6 of 7)	intron (NM_003756, intron 6 of 7)	108865	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_81453	chr5	107071924	107072079	+	16.58591	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-65405	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_88086	chr6	54879604	54879766	+	16.58591	NA	Intergenic	Intergenic	-159386	NM_001526	3062	Hs.151624	NM_001526	HPRD:08374	HCRTR2	OX2R	hypocretin (orexin) receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_30270	chr14	52031807	52031941	+	16.58591	NA	intron (NR_047477, intron 2 of 3)	intron (NR_047477, intron 2 of 3)	34796	NR_051990	100874185	Hs.578226	NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_66166	chr3	754998	755169	+	16.58591	NA	intron (NR_110118, intron 1 of 3)	intron (NR_110118, intron 1 of 3)	121295	NR_110118	101927215	Hs.650700	NR_110118	ENSG00000224957	LINC01266	-	long intergenic non-protein coding RNA 1266	ncRNA
19-PTNLD28-TUMOR_peak_72317	chr3	171013941	171014065	+	16.58591	NA	intron (NM_001161565, intron 2 of 30)	intron (NM_001161565, intron 2 of 30)	164194	NM_001161564	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_84983	chr6	4388941	4389139	+	16.58591	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-221759	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_30113	chr14	47747002	47747188	+	16.58591	NA	intron (NM_001113498, intron 2 of 16)	intron (NM_001113498, intron 2 of 16)	65354	NM_182830	161357	Hs.436380	NM_182830	HPRD:14352	MDGA2	MAMDC1|c14_5286	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
19-PTNLD28-TUMOR_peak_34187	chr15	68966396	68966578	+	16.58591	NA	intron (NM_006091, intron 2 of 11)	intron (NM_006091, intron 2 of 11)	42160	NM_001190457	10391	Hs.551213	NM_006091	HPRD:05416	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
19-PTNLD28-TUMOR_peak_30598	chr14	59921066	59921216	+	16.58591	NA	Intergenic	L2|LINE|L2	10918	NM_022571	64582	Hs.647573	NM_022571		GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
19-PTNLD28-TUMOR_peak_99095	chr8	68629058	68629239	+	16.58591	NA	intron (NM_020361, intron 1 of 10)	intron (NM_020361, intron 1 of 10)	29472	NM_020361	57094	Hs.658850	NM_020361	HPRD:09891	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
19-PTNLD28-TUMOR_peak_98854	chr8	56773605	56773788	+	16.58591	NA	Intergenic	MIRc|SINE|MIR	-18690	NM_001111097	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_67511	chr3	36934629	36934972	+	16.58591	NA	intron (NM_014831, intron 4 of 22)	intron (NM_014831, intron 4 of 22)	51748	NM_014831	9881	Hs.170999	NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71737	chr3	150945596	150945760	+	16.58591	NA	intron (NM_014879, intron 1 of 2)	MER20|DNA|hAT-Charlie	21320	NM_001081455	9934	Hs.2465	NM_014879	HPRD:08820	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding
19-PTNLD28-TUMOR_peak_68654	chr3	59843579	59843737	+	16.58591	NA	intron (NM_001166243, intron 8 of 9)	intron (NM_001166243, intron 8 of 9)	-807943	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_25791	chr12	100557796	100557949	+	16.58591	NA	TTS (NR_024261)	TTS (NR_024261)	9249	NR_036632	55592	Hs.524660	NM_017600	HPRD:13195	GOLGA2P5	GOLGA2B|GOLGA2L1	golgin A2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_46849	chr19	5404175	5404334	+	16.58591	NA	Intergenic	Intergenic	-51172	NM_181710	148066	Hs.126496	NM_181710	HPRD:15895	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
19-PTNLD28-TUMOR_peak_108801	chrX	75823079	75823201	+	16.58591	NA	Intergenic	L1PA3|LINE|L1	175094	NM_020932	57692	Hs.8453	NM_020932	HPRD:06583	MAGEE1	DAMAGE|HCA1	melanoma antigen family E, 1	protein-coding
19-PTNLD28-TUMOR_peak_23930	chr12	46466053	46466288	+	16.58591	NA	Intergenic	Intergenic	-81769	NM_004719	9169	Hs.210367	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
19-PTNLD28-TUMOR_peak_62103	chr20	52720043	52720199	+	16.58591	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-32817	NM_003657	8537	Hs.400556	NM_003657	HPRD:04273	BCAS1	AIBC1|NABC1	breast carcinoma amplified sequence 1	protein-coding
19-PTNLD28-TUMOR_peak_105468	chr9	115209719	115210035	+	16.58591	NA	intron (NM_001195822, intron 6 of 8)	intron (NM_001195822, intron 6 of 8)	-39371	NM_001287036	158405	Hs.656619	NM_133465	HPRD:11173	KIAA1958	-	KIAA1958	protein-coding
19-PTNLD28-TUMOR_peak_62962	chr21	26829789	26830003	+	16.58591	NA	Intergenic	Intergenic	-25883	NR_024027	54072	Hs.234016	NM_058184	HPRD:10748	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
19-PTNLD28-TUMOR_peak_53453	chr2	72595039	72595294	+	16.58591	NA	intron (NM_015189, intron 19 of 21)	L1MA2|LINE|L1	-220175	NM_019885	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_53021	chr2	63053440	63053579	+	16.58591	NA	intron (NM_015252, intron 6 of 24)	intron (NM_015252, intron 6 of 24)	119477	NM_001142614	23301	Hs.271667	NM_015252	HPRD:10109	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_52470	chr2	44363447	44363624	+	16.58591	NA	Intergenic	MER67C|LTR|ERV1	-32407	NM_177969	5495	Hs.416769	NM_002706	HPRD:04796	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent, 1B	protein-coding
19-PTNLD28-TUMOR_peak_89411	chr6	128178349	128178536	+	16.58591	NA	intron (NM_001164687, intron 1 of 5)	L2c|LINE|L2	43784	NM_001164685	387357	Hs.661756	NM_001010923	HPRD:16662	THEMIS	C6orf190|C6orf207|GASP|SPOT|TSEPA|bA325O24.3|bA325O24.4	thymocyte selection associated	protein-coding
19-PTNLD28-TUMOR_peak_79175	chr5	17680072	17680219	+	16.58591	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-292726	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_97462	chr8	20126134	20126454	+	16.58591	NA	Intergenic	Intergenic	-6990	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63366	chr21	36715431	36715644	+	16.58591	NA	Intergenic	MER34A|LTR|ERV1	237525	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_99598	chr8	97145123	97145289	+	16.58591	NA	Intergenic	Intergenic	27814	NM_001001557	392255	Hs.492277	NM_001001557	HPRD:11002	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|LCA17|MCOP4|MCOPCB6|SCDO4|SGM1	growth differentiation factor 6	protein-coding
19-PTNLD28-TUMOR_peak_100305	chr8	119755988	119756127	+	16.58591	NA	Intergenic	Intergenic	-121823	NR_109794	401474	Hs.359393	NM_207506	HPRD:15293	SAMD12	-	sterile alpha motif domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_53137	chr2	65593803	65593947	+	16.58591	NA	promoter-TSS (NM_001128210)	promoter-TSS (NM_001128210)	56	NM_001128210	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_13894	chr10	64926690	64926826	+	16.58591	NA	TTS (NM_032776)	TTS (NM_032776)	33751	NM_030759	29982	Hs.449628	NM_030759	HPRD:11401	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_25087	chr12	67056608	67056777	+	16.58591	NA	intron (NM_021150, intron 1 of 23)	L4|LINE|RTE	16233	NM_001178074	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_70960	chr3	133916632	133916761	+	16.58591	NA	intron (NM_001005861, intron 6 of 14)	intron (NM_001005861, intron 6 of 14)	52890	NM_002958	6259	Hs.654562	NM_002958	HPRD:02751	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_65184	chr22	32438955	32439233	+	16.58591	NA	promoter-TSS (NM_000343)	promoter-TSS (NM_000343)	75	NM_000343	6523	Hs.1964	NM_000343	HPRD:01668	SLC5A1	D22S675|NAGT|SGLT1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_91783	chr7	29020308	29020481	+	16.58591	NA	intron (NR_038965, intron 1 of 4)	intron (NR_038965, intron 1 of 4)	811	NR_038965	100506497	Hs.586328	NR_038965	ENSG00000272568	LOC100506497	-	uncharacterized LOC100506497	ncRNA
19-PTNLD28-TUMOR_peak_16101	chr10	125813591	125813759	+	16.58591	NA	intron (NM_001270765, intron 1 of 5)	intron (NM_001270765, intron 1 of 5)	38265	NM_015892	51363	Hs.287537	NM_014863	HPRD:12203	CHST15	BRAG|GALNAC4S-6ST	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_54642	chr2	105648986	105649220	+	16.58591	NA	intron (NR_110603, intron 1 of 2)	intron (NR_110603, intron 1 of 2)	-5380	NM_182640	64965	Hs.590900	NM_182640	HPRD:17602	MRPS9	MRP-S9|RPMS9|S9mt	mitochondrial ribosomal protein S9	protein-coding
19-PTNLD28-TUMOR_peak_16232	chr10	129743698	129743956	+	16.58591	NA	intron (NM_006504, intron 1 of 20)	intron (NM_006504, intron 1 of 20)	38502	NM_006504	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_83876	chr5	170218464	170218635	+	16.58591	NA	intron (NM_014211, intron 3 of 9)	intron (NM_014211, intron 3 of 9)	7826	NM_014211	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_42346	chr17	50905001	50905147	+	16.58591	NA	Intergenic	MER61-int|LTR|ERV1	-157806	NM_001243552	100506650	Hs.146556	NM_001243552	ENSG00000227011	C17orf112	-	chromosome 17 open reading frame 112	protein-coding
19-PTNLD28-TUMOR_peak_56881	chr2	170364268	170364428	+	16.58591	NA	Intergenic	Intergenic	-1864	NM_006063	10324	Hs.50550	NM_006063	HPRD:07610	KLHL41	KBTBD10|Krp1|NEM9|SARCOSIN	kelch-like family member 41	protein-coding
19-PTNLD28-TUMOR_peak_20266	chr11	78419571	78419744	+	16.58591	NA	intron (NM_001098816, intron 26 of 33)	intron (NM_001098816, intron 26 of 33)	-133748	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_79975	chr5	55727563	55727732	+	16.58591	NA	Intergenic	AluJr|SINE|Alu	49949	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_4659	chr1	87114042	87114196	+	16.58591	NA	non-coding (NR_024604, exon 12 of 15)	non-coding (NR_024604, exon 12 of 15)	14160	NR_024604	9629	Hs.673847	NM_004921	HPRD:05065	CLCA3P	CLCA3	chloride channel accessory 3, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52733	chr2	49536771	49536898	+	16.58591	NA	Intergenic	Intergenic	-155168	NM_181446	2492	Hs.1428	NM_000145	HPRD:00639	FSHR	FSHRO|LGR1|ODG1	follicle stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_82419	chr5	137289947	137290092	+	16.58591	NA	exon (NM_016603, exon 14 of 23)	exon (NM_016603, exon 14 of 23)	64894	NM_001300921	27039	Hs.716884	NM_014386	HPRD:05238	PKD2L2	TRPP5	polycystic kidney disease 2-like 2	protein-coding
19-PTNLD28-TUMOR_peak_4341	chr1	72256438	72256605	+	16.58591	NA	intron (NM_173808, intron 2 of 6)	intron (NM_173808, intron 2 of 6)	46174	NR_046218	100852409	Hs.681780	NR_046218		NEGR1-IT1	-	NEGR1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_109546	chrX	134125011	134125195	+	16.58591	NA	5' UTR (NM_001163438, exon 1 of 1)	5' UTR (NM_001163438, exon 1 of 1)	135	NM_001163438	644538	Hs.42239	NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
19-PTNLD28-TUMOR_peak_75684	chr4	75338930	75339113	+	16.58591	NA	Intergenic	Intergenic	28206	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_53222	chr2	67828146	67828312	+	16.58591	NA	Intergenic	L2c|LINE|L2	203787	NM_019002	54465	Hs.353022	NM_019002	HPRD:13282	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_53319	chr2	69983327	69983527	+	16.58591	NA	intron (NM_001153, intron 1 of 12)	intron (NM_001153, intron 1 of 12)	14300	NM_001153	307	Hs.422986	NM_001153	HPRD:00112	ANXA4	ANX4|HEL-S-274|PIG28|ZAP36	annexin A4	protein-coding
19-PTNLD28-TUMOR_peak_39609	chr17	1326225	1326472	+	16.58591	NA	3' UTR (NM_005206, exon 3 of 3)	3' UTR (NM_005206, exon 3 of 3)	-22792	NM_006761	7531	Hs.513851	NM_006761	HPRD:05457	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_77881	chr4	161286111	161286239	+	16.58591	NA	Intergenic	MER11D|LTR|ERVK	1097177	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_79209	chr5	21107657	21107766	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	-351878	NR_027026	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_55500	chr2	124715728	124715881	+	16.58591	NA	Intergenic	Intergenic	-67060	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_84670	chr6	722121	722290	+	16.58591	NA	Intergenic	Intergenic	-29064	NM_018303	55770	Hs.484412	NM_018303	HPRD:11544	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
19-PTNLD28-TUMOR_peak_29429	chr14	22848316	22848442	+	16.58591	NA	Intergenic	Intergenic	209764	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_1945	chr1	30293271	30293451	+	16.58591	NA	Intergenic	L1ME1|LINE|L1	217098	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_17759	chr11	28628616	28628808	+	16.58591	NA	Intergenic	Intergenic	-129617	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_89179	chr6	114011958	114012149	+	16.58591	NA	Intergenic	Intergenic	-166474	NM_002356	4082	Hs.519909	NM_002356	HPRD:07519	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
19-PTNLD28-TUMOR_peak_62848	chr21	17702780	17702937	+	16.58591	NA	intron (NR_027790, intron 4 of 7)	intron (NR_027790, intron 4 of 7)	136159	NR_027791	388815	Hs.473394	NM_001005732	HPRD:10746	MIR99AHG	C21orf34|C21orf35|FLJ38295|LINC00478|MONC	mir-99a-let-7c cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_17186	chr11	11938576	11938741	+	16.58591	NA	intron (NM_001282659, intron 8 of 27)	AluJo|SINE|Alu	75688	NM_017944	55031	Hs.577256	NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
19-PTNLD28-TUMOR_peak_44597	chr18	11733067	11733229	+	16.58591	NA	intron (NM_182978, intron 1 of 11)	intron (NM_182978, intron 1 of 11)	-18323	NM_001261443	2774	Hs.136295	NM_002071	HPRD:00758	GNAL	DYT25	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	protein-coding
19-PTNLD28-TUMOR_peak_28592	chr13	80357060	80357282	+	16.58591	NA	Intergenic	Intergenic	-21350	NR_125785	102724076	Hs.208617	NR_125785		LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
19-PTNLD28-TUMOR_peak_21232	chr11	113160374	113160573	+	16.58591	NA	Intergenic	Intergenic	-15850	NR_034101	100288346	Hs.661826	NR_034101	ENSG00000227487	NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA
19-PTNLD28-TUMOR_peak_100089	chr8	110367187	110367381	+	16.58591	NA	Intergenic	LTR58|LTR|ERV1	-7422	NM_177531	93035	Hs.170128	NM_177531	HPRD:09703	PKHD1L1	PKHDL1	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_3796	chr1	58863180	58863347	+	16.58591	NA	Intergenic	Intergenic	-147052	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_93780	chr7	86568657	86568778	+	16.58591	NA	intron (NM_001291991, intron 5 of 20)	intron (NM_001291991, intron 5 of 20)	26574	NM_152748	222223	Hs.208093	NM_152748	HPRD:13405	KIAA1324L	EIG121L	KIAA1324-like	protein-coding
19-PTNLD28-TUMOR_peak_79474	chr5	35777836	35777974	+	16.58591	NA	intron (NM_024867, intron 29 of 36)	intron (NM_024867, intron 29 of 36)	-79072	NM_002185	3575	Hs.591742	NM_002185	HPRD:00893	IL7R	CD127|CDW127|IL-7R-alpha|IL7RA|ILRA	interleukin 7 receptor	protein-coding
19-PTNLD28-TUMOR_peak_97741	chr8	25517859	25518012	+	16.58591	NA	Intergenic	L1PA3|LINE|L1	201422	NM_152562	157313	Hs.33366	NM_152562	HPRD:13014	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
19-PTNLD28-TUMOR_peak_92838	chr7	63784644	63784865	+	16.58591	NA	intron (NM_001170905, intron 1 of 3)	intron (NM_001170905, intron 1 of 3)	10503	NM_001170905	728927	Hs.386162	NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
19-PTNLD28-TUMOR_peak_44746	chr18	14887528	14887653	+	16.58591	NA	Intergenic	Intergenic	57425	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	ncRNA
19-PTNLD28-TUMOR_peak_103212	chr9	42322643	42322769	+	16.58591	NA	Intergenic	Intergenic	-45597	NM_001012421	441430	Hs.632663	NM_001012421	HPRD:18652	ANKRD20A2	-	ankyrin repeat domain 20 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_20881	chr11	102707152	102707294	+	16.58591	NA	non-coding (NR_038390, exon 8 of 8)	non-coding (NR_038390, exon 8 of 8)	7119	NM_002422	4314	Hs.375129	NM_002422	HPRD:01703	MMP3	CHDS6|MMP-3|SL-1|STMY|STMY1|STR1	matrix metallopeptidase 3 (stromelysin 1, progelatinase)	protein-coding
19-PTNLD28-TUMOR_peak_8408	chr1	177320545	177320767	+	16.58591	NA	Intergenic	Intergenic	180023	NM_021165	57795	Hs.495918	NM_021165	HPRD:13891	BRINP2	DBCCR1L2|FAM5B	bone morphogenetic protein/retinoic acid inducible neural-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_35431	chr15	99416978	99417328	+	16.58591	NA	intron (NM_001291858, intron 2 of 20)	intron (NM_001291858, intron 2 of 20)	89498	NR_039864	100616432		NR_039864		MIR4714	-	microRNA 4714	ncRNA
19-PTNLD28-TUMOR_peak_91817	chr7	29924140	29924280	+	16.58591	NA	intron (NM_001080529, intron 5 of 8)	CpG	78040	NM_001080529	644150	Hs.380698	NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_79271	chr5	27592476	27592645	+	16.58591	NA	Intergenic	Intergenic	120161	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
19-PTNLD28-TUMOR_peak_105981	chr9	125987781	125987926	+	16.58591	NA	intron (NR_033234, intron 1 of 18)	MLT1N2|LTR|ERVL-MaLR	42990	NM_018387	55342	Hs.287659	NM_018387	HPRD:10257	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
19-PTNLD28-TUMOR_peak_66531	chr3	10305669	10305812	+	16.58591	NA	intron (NM_014760, intron 3 of 7)	HAL1|LINE|L1	15563	NM_014760	9797	Hs.475401	NM_014760	HPRD:18712	TATDN2	-	TatD DNase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_77197	chr4	140506070	140506190	+	16.58591	NA	Intergenic	Intergenic	-28553	NM_030648	80854	Hs.480792	NM_030648	HPRD:16226	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing (lysine methyltransferase) 7	protein-coding
19-PTNLD28-TUMOR_peak_81082	chr5	88917777	88917911	+	16.58591	NA	Intergenic	L1PA3|LINE|L1	394693	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_51801	chr2	28200848	28201027	+	16.58591	NA	intron (NM_199193, intron 4 of 13)	MSTB|LTR|ERVL-MaLR	-18297	NR_036230	100422965		NR_036230		MIR4263	-	microRNA 4263	ncRNA
19-PTNLD28-TUMOR_peak_17182	chr11	11820497	11820610	+	16.58591	NA	Intergenic	Intergenic	-15784	NR_107037	102465870		NR_107037		MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
19-PTNLD28-TUMOR_peak_26454	chr12	116491801	116491946	+	16.58591	NA	intron (NM_015335, intron 4 of 30)	intron (NM_015335, intron 4 of 30)	94586	NR_030351	693205		NR_030351		MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
19-PTNLD28-TUMOR_peak_45129	chr18	29897315	29897502	+	16.58591	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	127421	NM_005925	4225	Hs.194777	NM_005925	HPRD:02667	MEP1B	-	meprin A, beta	protein-coding
19-PTNLD28-TUMOR_peak_56854	chr2	169818277	169818415	+	16.58591	NA	intron (NM_003742, intron 18 of 27)	intron (NM_003742, intron 18 of 27)	60596	NM_001081686	57818	Hs.283963	NM_021176		G6PC2	IGRP	glucose-6-phosphatase, catalytic, 2	protein-coding
19-PTNLD28-TUMOR_peak_99271	chr8	78853120	78853474	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	-575039	NM_181839	5569	Hs.433700	NM_006823	HPRD:05828	PKIA	PRKACN1	protein kinase (cAMP-dependent, catalytic) inhibitor alpha	protein-coding
19-PTNLD28-TUMOR_peak_104007	chr9	80408840	80409156	+	16.58591	NA	intron (NM_002072, intron 5 of 6)	intron (NM_002072, intron 5 of 6)	-145766	NM_004297	9630	Hs.657795	NM_004297	HPRD:05095	GNA14	-	guanine nucleotide binding protein (G protein), alpha 14	protein-coding
19-PTNLD28-TUMOR_peak_34824	chr15	82090686	82090858	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	247712	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_60978	chr20	37314633	37314753	+	16.58591	NA	Intergenic	Intergenic	-38412	NM_080552	140679	Hs.179080	NM_080552	HPRD:18058	SLC32A1	VGAT|VIAAT	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_83903	chr5	170998813	170998959	+	16.58591	NA	Intergenic	Intergenic	152219	NM_003862	8817	Hs.87191	NM_003862	HPRD:04766	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
19-PTNLD28-TUMOR_peak_90447	chr6	164530271	164530499	+	16.58591	NA	Intergenic	Intergenic	694710	NM_001301085	9444	Hs.510324	NM_006775	HPRD:06691	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing, RNA binding	protein-coding
19-PTNLD28-TUMOR_peak_83341	chr5	152941892	152942087	+	16.58591	NA	intron (NM_001258020, intron 3 of 16)	intron (NM_001258020, intron 3 of 16)	70257	NM_001258022	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_14678	chr10	86184535	86184774	+	16.58591	NA	promoter-TSS (NM_001284242)	promoter-TSS (NM_001284242)	-41	NM_001284243	54462	Hs.461988	NM_018999	HPRD:13832	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
19-PTNLD28-TUMOR_peak_56545	chr2	159887609	159887780	+	16.58591	NA	intron (NM_001145909, intron 2 of 26)	intron (NM_001145909, intron 2 of 26)	62548	NM_033394	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71460	chr3	143568848	143569000	+	16.58591	NA	Intergenic	Intergenic	-1551	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_71039	chr3	135232610	135232815	+	16.58591	NA	Intergenic	LTR8|LTR|ERV1	-451803	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_81146	chr5	91459695	91460057	+	16.58591	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-780727	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_105147	chr9	108663879	108664052	+	16.58591	NA	Intergenic	Intergenic	207159	NM_018112	55151	Hs.411925	NM_018112	HPRD:15538	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
19-PTNLD28-TUMOR_peak_79246	chr5	24135755	24135914	+	16.58591	NA	Intergenic	L1M4b|LINE|L1	509251	NM_006727	1008	Hs.92489	NM_006727	HPRD:05187	CDH10	-	cadherin 10, type 2 (T2-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_38922	chr16	80500395	80500553	+	16.58591	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-74380	NM_130897	83657	Hs.98849	NM_130897	HPRD:06204	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein, light chain, roadblock-type 2	protein-coding
19-PTNLD28-TUMOR_peak_44633	chr18	12214645	12214927	+	16.58591	NA	intron (NR_049896, intron 3 of 4)	intron (NR_049896, intron 3 of 4)	14008	NR_049896	497259	Hs.451609	NR_049896		C18orf61	-	uncharacterized LOC497259	ncRNA
19-PTNLD28-TUMOR_peak_81378	chr5	102192170	102192386	+	16.58591	NA	Intergenic	Intergenic	-9249	NR_033440	5066	Hs.369430	NM_000919	HPRD:01361	PAM	PAL|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
19-PTNLD28-TUMOR_peak_47564	chr19	13957388	13957538	+	16.58591	NA	Intergenic	Intergenic	-9990	NR_029495	407010		NR_029495	miRBase:MI0000079	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A	microRNA 23a	ncRNA
19-PTNLD28-TUMOR_peak_31498	chr14	81034412	81034820	+	16.58591	NA	intron (NM_152446, intron 19 of 23)	intron (NM_152446, intron 19 of 23)	-337219	NM_000793	1734	Hs.202354	NM_000793	HPRD:09027	DIO2	5DII|D2|DIOII|SelY|TXDI2	deiodinase, iodothyronine, type II	protein-coding
19-PTNLD28-TUMOR_peak_74886	chr4	29222435	29222717	+	16.58591	NA	Intergenic	Intergenic	401372	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	ncRNA
19-PTNLD28-TUMOR_peak_27098	chr12	127539156	127539353	+	16.58591	NA	intron (NR_104646, intron 1 of 6)	intron (NR_104646, intron 1 of 6)	5688	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_98031	chr8	30338439	30338595	+	16.58591	NA	intron (NM_001008712, intron 4 of 6)	intron (NM_001008712, intron 4 of 6)	-95600	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	RBPMS-AS1	-	RBPMS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19466	chr11	67071435	67071697	+	16.58591	NA	intron (NM_017857, intron 1 of 13)	CpG	647	NM_017857	54961	Hs.29173	NM_017857	HPRD:09488	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
19-PTNLD28-TUMOR_peak_34749	chr15	79932647	79932905	+	16.58591	NA	Intergenic	Intergenic	207918	NM_015206	23251	Hs.301654	NM_015206	HPRD:17206	KIAA1024	-	KIAA1024	protein-coding
19-PTNLD28-TUMOR_peak_14705	chr10	87636841	87636969	+	16.58591	NA	intron (NM_017551, intron 5 of 15)	L1PA4|LINE|L1	299417	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63223	chr21	34499549	34499898	+	16.58591	NA	Intergenic	Intergenic	-3717	NR_109961	101928107	Hs.382669	NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
19-PTNLD28-TUMOR_peak_106712	chr9	138863886	138864063	+	16.58591	NA	Intergenic	Intergenic	-10748	NM_016172	10422	Hs.9194	NM_016172	HPRD:12170	UBAC1	GBDR1|UBADC1	UBA domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_35149	chr15	89959642	89959785	+	16.58591	NA	Intergenic	Intergenic	38440	NR_015411	254559	Hs.136313	NR_015411		LINC00925	-	long intergenic non-protein coding RNA 925	ncRNA
19-PTNLD28-TUMOR_peak_108441	chrX	55650866	55651161	+	16.58591	NA	exon (NM_198451, exon 1 of 1)	exon (NM_198451, exon 1 of 1)	1180	NM_198451	139628	Hs.364260	NM_198451	HPRD:13552	FOXR2	FOXN6	forkhead box R2	protein-coding
19-PTNLD28-TUMOR_peak_58572	chr2	223006827	223006993	+	16.58591	NA	Intergenic	Intergenic	-155956	NM_153038	151278	Hs.350729	NM_153038	HPRD:08132	CCDC140	-	coiled-coil domain containing 140	protein-coding
19-PTNLD28-TUMOR_peak_28983	chr13	107587107	107587295	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	280973	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_89121	chr6	111919630	111919793	+	16.58591	NA	non-coding (NR_034109, exon 2 of 2)	non-coding (NR_034109, exon 2 of 2)	7766	NR_028338	10758	Hs.561514	NM_147200	HPRD:06129	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_76428	chr4	103301470	103301608	+	16.58591	NA	Intergenic	L1PA4|LINE|L1	-34884	NM_001135146	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_11195	chr1	237725683	237725834	+	16.58591	NA	intron (NM_001035, intron 27 of 104)	intron (NM_001035, intron 27 of 104)	-299717	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_4485	chr1	79518652	79518871	+	16.58591	NA	Intergenic	Intergenic	-46266	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	EGF, latrophilin and seven transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_82406	chr5	136996130	136996276	+	16.58591	NA	intron (NM_001257194, intron 7 of 14)	intron (NM_001257194, intron 7 of 14)	-12865	NR_030588	100126343		NR_030588		MIR874	MIRN874|hsa-mir-874	microRNA 874	ncRNA
19-PTNLD28-TUMOR_peak_15557	chr10	110822232	110822412	+	16.58591	NA	Intergenic	MER57C2|LTR|ERV1	-108093	NR_046928	100873762		NR_046928		RNU6-53P	RNU6-53	RNA, U6 small nuclear 53, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_56324	chr2	152560860	152560993	+	16.58591	NA	intron (NM_001164508, intron 13 of 181)	L1PA2|LINE|L1	30075	NM_001164508	4703	Hs.588655	NM_004543	HPRD:01196	NEB	NEB177D|NEM2	nebulin	protein-coding
19-PTNLD28-TUMOR_peak_81630	chr5	113521021	113521250	+	16.58591	NA	Intergenic	MER61A|LTR|ERV1	-176881	NM_021614	3781	Hs.98280	NM_021614	HPRD:09323	KCNN2	KCa2.2|SK2|SKCA2|SKCa 2|hSK2	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
19-PTNLD28-TUMOR_peak_426	chr1	7130533	7130706	+	16.58591	NA	intron (NM_015215, intron 3 of 22)	intron (NM_015215, intron 3 of 22)	285235	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_53717	chr2	84530175	84530300	+	16.58591	NA	Intergenic	Intergenic	12431	NR_003663	388965	Hs.664098	NM_001013648	HPRD:18390	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_14795	chr10	89870160	89870324	+	16.58591	NA	Intergenic	Intergenic	247047	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
19-PTNLD28-TUMOR_peak_102065	chr9	5269214	5269470	+	16.58591	NA	Intergenic	Intergenic	35269	NM_005059	6019	Hs.127032	NM_005059	HPRD:01561	RLN2	H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2	relaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_99596	chr8	96805231	96805411	+	16.58591	NA	intron (NR_038206, intron 3 of 4)	intron (NR_038206, intron 3 of 4)	155255	NR_036611	100500773	Hs.741582	NR_036611		LOC100500773	-	serine/arginine-rich splicing factor 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91942	chr7	33496764	33496936	+	16.58591	NA	intron (NM_198428, intron 19 of 22)	intron (NM_198428, intron 19 of 22)	327698	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_52919	chr2	58989387	58989629	+	16.58591	NA	intron (NR_033873, intron 2 of 13)	intron (NR_033873, intron 2 of 13)	241620	NR_033873	400955	Hs.503210	NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA
19-PTNLD28-TUMOR_peak_23313	chr12	19351334	19351556	+	16.58591	NA	intron (NM_001256470, intron 3 of 31)	L2a|LINE|L2	-6814	NM_001256787	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_50897	chr2	7847926	7848176	+	16.58591	NA	Intergenic	Intergenic	191735	NR_110256	101929551	Hs.116006	NR_110256		LOC101929551	-	uncharacterized LOC101929551	ncRNA
19-PTNLD28-TUMOR_peak_50620	chr19_gl000209_random	79503	79635	+	16.58591	NA	intron (NM_001083539, intron 6 of 8)	intron (NM_001083539, intron 6 of 8)	-7122	NM_020535	57292	Hs.740906	NM_020535		KIR2DL5A	CD158F|KIR2DL5|KIR2DL5.1|KIR2DL5.3	killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5A	protein-coding
19-PTNLD28-TUMOR_peak_25180	chr12	69291595	69291746	+	16.58591	NA	intron (NM_001005502, intron 2 of 8)	AluJb|SINE|Alu	35309	NM_001005502	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_88743	chr6	90650279	90650433	+	16.58591	NA	intron (NM_021813, intron 7 of 8)	intron (NM_021813, intron 7 of 8)	46168	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_63152	chr21	33176419	33176597	+	16.58591	NA	Intergenic	Intergenic	-69120	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_43003	chr17	64428094	64428299	+	16.58591	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-15224	NR_110822	101928001	Hs.650730	NR_110822	ENSG00000264630	LOC101928001	-	uncharacterized LOC101928001	ncRNA
19-PTNLD28-TUMOR_peak_42596	chr17	56524983	56525097	+	16.58591	NA	intron (NM_001080439, intron 5 of 5)	L1M1|LINE|L1	-30109	NM_017763	54894	Hs.584916	NM_017763	HPRD:07896	RNF43	RNF124|URCC	ring finger protein 43	protein-coding
19-PTNLD28-TUMOR_peak_92923	chr7	65746772	65747041	+	16.58591	NA	intron (NM_003596, intron 2 of 5)	intron (NM_003596, intron 2 of 5)	76647	NM_003596	8460	Hs.421194	NM_003596	HPRD:07216	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_68667	chr3	61167682	61167799	+	16.58591	NA	intron (NM_001166243, intron 2 of 9)	intron (NM_001166243, intron 2 of 9)	69393	NM_002012	2272	Hs.655995	NM_002012	HPRD:03096	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
19-PTNLD28-TUMOR_peak_99092	chr8	68507667	68507817	+	16.58591	NA	intron (NM_020361, intron 2 of 10)	L1PA3|LINE|L1	150878	NM_020361	57094	Hs.658850	NM_020361	HPRD:09891	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
19-PTNLD28-TUMOR_peak_33433	chr15	45535036	45535149	+	16.58591	NA	Intergenic	LTR14C|LTR|ERVK	-9336	NM_004212	9153	Hs.367833	NM_004212	HPRD:07069	SLC28A2	CNT2|HCNT2|HsT17153|SPNT1	solute carrier family 28 (concentrative nucleoside transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_102534	chr9	26614022	26614149	+	16.58591	NA	Intergenic	LTR13|LTR|ERVK	278741	NM_024828	79886	Hs.178357	NM_024828	HPRD:12981	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_106522	chr9	135128108	135128240	+	16.58591	NA	Intergenic	LTR13|LTR|ERVK	90840	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_12817	chr10	32338047	32338357	+	16.58591	NA	intron (NM_004521, intron 1 of 25)	intron (NM_004521, intron 1 of 25)	7169	NM_004521	3799	Hs.327736	NM_004521	HPRD:07214	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
19-PTNLD28-TUMOR_peak_21436	chr11	117254870	117255026	+	16.58591	NA	intron (NM_001271933, intron 13 of 31)	intron (NM_001271933, intron 13 of 31)	56377	NM_014956	22897	Hs.504009	NM_014956	HPRD:10854	CEP164	NPHP15	centrosomal protein 164kDa	protein-coding
19-PTNLD28-TUMOR_peak_36813	chr16	22910290	22910472	+	16.58591	NA	intron (NM_006043, intron 1 of 1)	intron (NM_006043, intron 1 of 1)	84521	NM_006043	9956	Hs.115830	NM_006043	HPRD:04957	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_60031	chr20	18257473	18257802	+	16.58591	NA	Intergenic	Intergenic	-11290	NM_001282996	7692	Hs.472221	NM_003434	HPRD:04964	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
19-PTNLD28-TUMOR_peak_415	chr1	6950073	6950185	+	16.58591	NA	intron (NM_015215, intron 3 of 22)	intron (NM_015215, intron 3 of 22)	104745	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_14799	chr10	90145338	90145566	+	16.58591	NA	intron (NM_001031709, intron 4 of 6)	intron (NM_001031709, intron 4 of 6)	197630	NM_018363	55328	Hs.149849	NM_018363	HPRD:07742	RNLS	C10orf59|RENALASE	renalase, FAD-dependent amine oxidase	protein-coding
19-PTNLD28-TUMOR_peak_65304	chr22	36317864	36318059	+	16.58591	NA	intron (NM_001082579, intron 2 of 13)	intron (NM_001082579, intron 2 of 13)	-81331	NM_014309	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_1542	chr1	24603937	24604219	+	16.58591	NA	Intergenic	MIR|SINE|MIR	-41734	NM_198173	57822	Hs.657920	NM_021180	HPRD:12210	GRHL3	SOM|TFCP2L4|VWS2	grainyhead-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_76769	chr4	119763265	119763519	+	16.58591	NA	Intergenic	Intergenic	-6066	NM_014822	9871	Hs.189641	NM_014822	HPRD:06218	SEC24D	-	SEC24 family member D	protein-coding
19-PTNLD28-TUMOR_peak_22963	chr12	8895141	8895347	+	16.58591	NA	intron (NR_123740, intron 2 of 8)	intron (NR_123740, intron 2 of 8)	42863	NM_020734	57494	Hs.504670	NM_020734	HPRD:13844	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
19-PTNLD28-TUMOR_peak_44963	chr18	22110676	22110882	+	16.58591	NA	Intergenic	Intergenic	70186	NM_021624	59340	Hs.287388	NM_021624	HPRD:06004	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
19-PTNLD28-TUMOR_peak_67488	chr3	35974465	35974647	+	16.58591	NA	Intergenic	Intergenic	188588	NR_029824	406916		NR_029824		MIR128-2	MIR128B|MIRN128-2|MIRN128B|mir-128b	microRNA 128-2	ncRNA
19-PTNLD28-TUMOR_peak_53376	chr2	70914068	70914256	+	16.58591	NA	intron (NM_017482, intron 9 of 12)	intron (NM_017482, intron 9 of 12)	80685	NM_001185054	119	Hs.188528	NM_001617	HPRD:00037	ADD2	ADDB	adducin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_67412	chr3	32367521	32367822	+	16.58591	NA	intron (NM_178868, intron 1 of 3)	intron (NM_178868, intron 1 of 3)	-65492	NM_138410	112616	Hs.440494	NM_138410	HPRD:06988	CMTM7	CKLFSF7	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_36369	chr16	12732964	12733187	+	16.58591	NA	Intergenic	Intergenic	-81103	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_71886	chr3	156025599	156025843	+	16.58591	NA	intron (NM_172159, intron 1 of 13)	L2a|LINE|L2	16945	NM_172159	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_100561	chr8	124845008	124845196	+	16.58591	NA	Intergenic	Intergenic	-19125	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_79467	chr5	35430988	35431181	+	16.58591	NA	Intergenic	Intergenic	-186905	NM_144722	79925	Hs.298863	NM_024867	HPRD:11181	SPEF2	CT122|KPL2	sperm flagellar 2	protein-coding
19-PTNLD28-TUMOR_peak_38579	chr16	70885374	70885501	+	16.58591	NA	intron (NM_001270974, intron 73 of 85)	L1PA16|LINE|L1	-50376	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_109089	chrX	106697651	106697809	+	16.58591	NA	Intergenic	L2a|LINE|L2	-67950	NM_032428	84443	Hs.496546	NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_5710	chr1	115642042	115642241	+	16.58591	NA	Intergenic	Intergenic	-10020	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_44457	chr18	8696852	8697010	+	16.58591	NA	intron (NR_120598, intron 1 of 1)	intron (NR_120598, intron 1 of 1)	10688	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_10104	chr1	219638707	219638841	+	16.58591	NA	Intergenic	Intergenic	290463	NM_001300772	127018	Hs.657617	NM_138794	HPRD:14335	LYPLAL1	-	lysophospholipase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91068	chr7	5367100	5367209	+	16.58591	NA	intron (NM_001080495, intron 19 of 29)	intron (NM_001080495, intron 19 of 29)	44593	NM_001040661	222962	Hs.4302	NM_153247	HPRD:15362	SLC29A4	ENT4|PMAT	solute carrier family 29 (equilibrative nucleoside transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_69215	chr3	81766139	81766413	+	16.58591	NA	intron (NM_000158, intron 1 of 15)	intron (NM_000158, intron 1 of 15)	44674	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_107654	chrX	16484894	16485036	+	16.58591	NA	Intergenic	Intergenic	-183316	NM_004057	795	Hs.639	NM_004057	HPRD:02360	S100G	CABP|CABP1|CABP9K|CALB3	S100 calcium binding protein G	protein-coding
19-PTNLD28-TUMOR_peak_69429	chr3	99749301	99749465	+	16.58591	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	-32324	NR_031662	100313938		NR_031662	miRBase:MI0006395	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
19-PTNLD28-TUMOR_peak_79089	chr5	16187905	16188078	+	16.58591	NA	Intergenic	LTR78|LTR|ERV1	-8094	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_39883	chr17	5624298	5624415	+	16.58591	NA	Intergenic	SVA_D|Other|Other	-51198	NR_040000	339166	Hs.736088	NR_040000	ENSG00000179314	LOC339166	-	uncharacterized LOC339166	ncRNA
19-PTNLD28-TUMOR_peak_89445	chr6	130339631	130339774	+	16.58591	NA	promoter-TSS (NM_032438)	promoter-TSS (NM_032438)	-26	NM_032438	84456	Hs.658051	NM_032438	HPRD:11222	L3MBTL3	MBT-1|MBT1	l(3)mbt-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_83467	chr5	156858936	156859136	+	16.58591	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-27991	NM_001172292	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_73072	chr3	188149373	188149626	+	16.58591	NA	intron (NM_001167671, intron 3 of 10)	MIR3|SINE|MIR	136955	NR_046623	100873917	Hs.674993	NR_046623		LPP-AS1	-	LPP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99450	chr8	88438018	88438141	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	448217	NM_152418	138009	Hs.371738	NM_152418	HPRD:08187	DCAF4L2	WDR21C	DDB1 and CUL4 associated factor 4-like 2	protein-coding
19-PTNLD28-TUMOR_peak_94162	chr7	98375101	98375248	+	16.58591	NA	Intergenic	Intergenic	92499	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_69297	chr3	89797258	89797368	+	16.58591	NA	Intergenic	L1PA3|LINE|L1	640639	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_44855	chr18	20354188	20354472	+	16.58591	NA	intron (NR_110782, intron 1 of 1)	intron (NR_110782, intron 1 of 1)	12470	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_76622	chr4	112245154	112245316	+	16.58591	NA	Intergenic	Intergenic	-681956	NM_001204399	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_43162	chr17	67729941	67730185	+	16.58591	NA	intron (NR_109971, intron 3 of 5)	intron (NR_109971, intron 3 of 5)	139935	NR_109972	101928122	Hs.579342	NR_109971	ENSG00000227517	LINC01483	-	long intergenic non-protein coding RNA 1483	ncRNA
19-PTNLD28-TUMOR_peak_75138	chr4	48096022	48096170	+	16.58591	NA	exon (NM_003328, exon 8 of 15)	exon (NM_003328, exon 8 of 15)	40177	NM_003328	7294	Hs.479669	NM_003328	HPRD:02505	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_105816	chr9	123425795	123425939	+	16.58591	NA	intron (NM_001080497, intron 1 of 5)	intron (NM_001080497, intron 1 of 5)	50898	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
19-PTNLD28-TUMOR_peak_90527	chr6	167596498	167596627	+	16.58591	NA	TTS (NM_001145121)	TTS (NM_001145121)	12481	NM_001145121	401285	Hs.691976	NM_001013683	HPRD:18427	TCP10L2	bA517H2.3	t-complex 10-like 2	protein-coding
19-PTNLD28-TUMOR_peak_21828	chr11	123578379	123578548	+	16.58591	NA	Intergenic	Intergenic	33900	NM_003455	7753	Hs.112556	NM_003455	HPRD:04577	ZNF202	ZKSCAN10|ZSCAN42	zinc finger protein 202	protein-coding
19-PTNLD28-TUMOR_peak_96922	chr8	6416484	6416627	+	16.58591	NA	intron (NM_001118887, intron 1 of 8)	intron (NM_001118887, intron 1 of 8)	4229	NM_001118888	285	Hs.583870	NM_001147	HPRD:03563	ANGPT2	AGPT2|ANG2	angiopoietin 2	protein-coding
19-PTNLD28-TUMOR_peak_83327	chr5	152373713	152373856	+	16.58591	NA	Intergenic	Intergenic	-21875	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19-PTNLD28-TUMOR_peak_20770	chr11	96740308	96740515	+	16.58591	NA	Intergenic	MER76-int|LTR|ERVL	-500370	NR_047481	100874053	Hs.742044	NR_047481		JRKL-AS1	-	JRKL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29439	chr14	23041570	23041697	+	16.58591	NA	intron (NM_001344, intron 2 of 2)	intron (NM_001344, intron 2 of 2)	16510	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_69618	chr3	107836230	107836375	+	16.58591	NA	Intergenic	MIRc|SINE|MIR	-7609	NR_110030	101929623	Hs.570653	NR_110028		LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
19-PTNLD28-TUMOR_peak_35297	chr15	92701823	92701987	+	16.58591	NA	intron (NM_013272, intron 9 of 9)	intron (NM_013272, intron 9 of 9)	-235235	NM_006011	8128	Hs.302341	NM_006011	HPRD:03969	ST8SIA2	HsT19690|SIAT8B|ST8SIA-II|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_102470	chr9	21936319	21936448	+	16.58591	NA	Intergenic	LTR23|LTR|ERV1	-30755	NR_024274	51198	Hs.721053	NM_016349	ENSG00000224854	C9orf53	bA149I2.3	chromosome 9 open reading frame 53	ncRNA
19-PTNLD28-TUMOR_peak_33924	chr15	63536722	63536882	+	16.58591	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-32947	NM_001145646	83464	Hs.511703	NM_031301	HPRD:06361	APH1B	APH-1B|PRO1328|PSFL|TAAV688	APH1B gamma secretase subunit	protein-coding
19-PTNLD28-TUMOR_peak_69488	chr3	101875339	101875510	+	16.58591	NA	Intergenic	Intergenic	215721	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_56464	chr2	157749000	157749279	+	16.58591	NA	Intergenic	Intergenic	-365201	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_39917	chr17	6511761	6511931	+	16.58591	NA	intron (NM_014804, intron 9 of 18)	intron (NM_014804, intron 9 of 18)	-32376	NM_032731	84817	Hs.408236	NM_032731	HPRD:11656	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_56833	chr2	169111199	169111343	+	16.58591	NA	Intergenic	Intergenic	-7166	NM_013233	27347	Hs.276271	NM_013233	HPRD:09627	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
19-PTNLD28-TUMOR_peak_31433	chr14	77600207	77600378	+	16.58591	NA	intron (NM_174976, intron 2 of 2)	intron (NM_174976, intron 2 of 2)	7842	NM_174976	283576	Hs.525485	NM_174976	HPRD:12655	ZDHHC22	C14orf59	zinc finger, DHHC-type containing 22	protein-coding
19-PTNLD28-TUMOR_peak_38160	chr16	60010938	60011076	+	16.58591	NA	intron (NR_110917, intron 1 of 3)	L1PA2|LINE|L1	121750	NR_110917	101927580	Hs.552235	NR_110917	ENSG00000261807	LOC101927580	-	uncharacterized LOC101927580	ncRNA
19-PTNLD28-TUMOR_peak_89690	chr6	139670708	139670903	+	16.58591	NA	Intergenic	Intergenic	24545	NM_001168389	10370	Hs.82071	NM_006079	HPRD:04245	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
19-PTNLD28-TUMOR_peak_28694	chr13	94982137	94982267	+	16.58591	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-141957	NR_046535	100873972	Hs.670344	NR_046535		GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105631	chr9	117749562	117749702	+	16.58591	NA	Intergenic	Intergenic	-56757	NM_001252290	944	Hs.494901	NM_001244		TNFSF8	CD153|CD30L|CD30LG	tumor necrosis factor (ligand) superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_64635	chr22	22918912	22919031	+	16.58591	NA	Intergenic	Intergenic	-17203	NM_206956	23532	Hs.30743	NM_006115	HPRD:05820	PRAME	CT130|MAPE|OIP-4|OIP4	preferentially expressed antigen in melanoma	protein-coding
19-PTNLD28-TUMOR_peak_102542	chr9	27059571	27059745	+	16.58591	NA	intron (NM_001099222, intron 18 of 19)	intron (NM_001099222, intron 18 of 19)	-49481	NM_000459	7010	Hs.89640	NM_000459	HPRD:02571	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK tyrosine kinase, endothelial	protein-coding
19-PTNLD28-TUMOR_peak_79258	chr5	25189717	25189835	+	16.58591	NA	Intergenic	Intergenic	-349084	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	ncRNA
19-PTNLD28-TUMOR_peak_19053	chr11	63117307	63117412	+	16.58591	NA	intron (NR_049833, intron 2 of 3)	L1PA3|LINE|L1	-19902	NM_080866	114571	Hs.502772	NM_080866	HPRD:06982	SLC22A9	HOAT4|OAT4|OAT7|UST3H|ust3	solute carrier family 22 (organic anion transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_76689	chr4	114567038	114567243	+	16.58591	NA	intron (NM_172114, intron 3 of 17)	intron (NM_172114, intron 3 of 17)	115943	NM_172127	817	Hs.144114	NM_001221	HPRD:09653	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
19-PTNLD28-TUMOR_peak_56204	chr2	148801973	148802193	+	16.58591	NA	intron (NM_018328, intron 2 of 14)	intron (NM_018328, intron 2 of 14)	-22910	NM_181742	5000	Hs.558364	NM_002552	HPRD:09118	ORC4	ORC4L|ORC4P	origin recognition complex, subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_9029	chr1	196330605	196330784	+	16.58591	NA	intron (NM_001287819, intron 14 of 26)	intron (NM_001287819, intron 14 of 26)	220917	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_32598	chr15	24114606	24114806	+	16.58591	NA	Intergenic	Intergenic	-182256	NM_002487	4692	Hs.50130	NM_002487	HPRD:03667	NDN	HsT16328|PWCR	necdin, melanoma antigen (MAGE) family member	protein-coding
19-PTNLD28-TUMOR_peak_56396	chr2	154244838	154245002	+	16.58591	NA	Intergenic	Intergenic	90402	NM_019845	56475	Hs.100890	NM_019845	HPRD:18002	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
19-PTNLD28-TUMOR_peak_25325	chr12	72913898	72914013	+	16.58591	NA	intron (NM_013381, intron 6 of 18)	L1PA3|LINE|L1	-246666	NR_026836	283392	Hs.363603	NM_001025457	HPRD:18764	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27997	chr13	42295106	42295303	+	16.58591	NA	intron (NM_001009814, intron 25 of 25)	intron (NM_001009814, intron 25 of 25)	-152673	NR_049803	100847026		NR_049803		MIR5006	-	microRNA 5006	ncRNA
19-PTNLD28-TUMOR_peak_33465	chr15	46604469	46604585	+	16.58591	NA	Intergenic	Intergenic	677589	NM_021199	58472	Hs.511251	NM_021199	HPRD:18102	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_100975	chr8	131432305	131432434	+	16.58591	NA	intron (NM_018482, intron 1 of 29)	intron (NM_018482, intron 1 of 29)	23537	NM_001247996	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_81759	chr5	119950300	119950445	+	16.58591	NA	intron (NM_016644, intron 2 of 2)	intron (NM_016644, intron 2 of 2)	150399	NM_001300783	51334	Hs.157461	NM_016644	HPRD:14239	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
19-PTNLD28-TUMOR_peak_98143	chr8	36135318	36135431	+	16.58591	NA	Intergenic	Intergenic	-506468	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_766	chr1	11610695	11611004	+	16.58591	NA	Intergenic	Intergenic	-58739	NR_104624	101929181	Hs.568616	NR_104624	ENSG00000235643	LOC101929181	-	uncharacterized LOC101929181	ncRNA
19-PTNLD28-TUMOR_peak_77277	chr4	141280966	141281251	+	16.58591	NA	intron (NM_001153635, intron 2 of 4)	MIR3|SINE|MIR	13438	NR_033939	100129858	Hs.660477	NR_033939	ENSG00000196951	SCOC-AS1	-	SCOC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21667	chr11	120856736	120857015	+	16.58591	NA	exon (NM_014619, exon 21 of 21)	exon (NM_014619, exon 21 of 21)	-37928	NM_001130047	219899	Hs.504136	NM_152715		TBCEL	El|LRRC35	tubulin folding cofactor E-like	protein-coding
19-PTNLD28-TUMOR_peak_34605	chr15	76116230	76116473	+	16.58591	NA	Intergenic	L2c|LINE|L2	-19276	NM_173469	92912	Hs.23033	NM_173469	HPRD:14294	UBE2Q2	-	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding
19-PTNLD28-TUMOR_peak_22600	chr12	4439523	4439629	+	16.58591	NA	intron (NM_020375, intron 1 of 5)	L1M5|LINE|L1	9217	NM_020375	57103	Hs.504545	NM_020375		C12orf5	FR2BP|TIGAR	chromosome 12 open reading frame 5	protein-coding
19-PTNLD28-TUMOR_peak_98902	chr8	58431636	58431885	+	16.58591	NA	Intergenic	Intergenic	239658	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
19-PTNLD28-TUMOR_peak_57572	chr2	194831448	194831619	+	16.58591	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-377460	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LOC101927406	-	uncharacterized LOC101927406	ncRNA
19-PTNLD28-TUMOR_peak_34234	chr15	69878391	69878524	+	16.58591	NA	Intergenic	Intergenic	24398	NR_026979	145837	Hs.410126	NR_026979		LOC145837	-	uncharacterized LOC145837	ncRNA
19-PTNLD28-TUMOR_peak_23403	chr12	24386900	24387108	+	16.58591	NA	intron (NR_120472, intron 4 of 4)	intron (NR_120472, intron 4 of 4)	10799	NR_120473	101928471	Hs.569156	NR_120472		LOC101928471	-	uncharacterized LOC101928471	ncRNA
19-PTNLD28-TUMOR_peak_5225	chr1	102462499	102462718	+	16.58591	NA	non-coding (NR_110210, exon 1 of 8)	non-coding (NR_110210, exon 1 of 8)	182	NM_001288823	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
19-PTNLD28-TUMOR_peak_107390	chrX	2807962	2808129	+	16.58591	NA	Intergenic	MER41A|LTR|ERV1	39371	NM_001669	414	Hs.528631	NM_001669	HPRD:02048	ARSD	ASD	arylsulfatase D	protein-coding
19-PTNLD28-TUMOR_peak_31817	chr14	94453990	94454123	+	16.58591	NA	Intergenic	Intergenic	-9560	NR_024182	256369	Hs.143845	NM_152777	HPRD:12651	LINC00521	C14orf48|c14_5713	long intergenic non-protein coding RNA 521	ncRNA
19-PTNLD28-TUMOR_peak_35137	chr15	89750136	89750300	+	16.58591	NA	Intergenic	Intergenic	14704	NM_000326	6017	Hs.1933	NM_000326	HPRD:01572	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_932	chr1	14517165	14517288	+	16.58591	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-407987	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_10032	chr1	214628076	214628227	+	16.58591	NA	intron (NM_005401, intron 2 of 18)	intron (NM_005401, intron 2 of 18)	96873	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_102598	chr9	29697110	29697277	+	16.58591	NA	Intergenic	Intergenic	-484195	NM_001258282	158038	Hs.662661	NM_152570	HPRD:08715	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28123	chr13	46386200	46386414	+	16.58591	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	39539	NM_198849	283514	Hs.368483	NM_198849	HPRD:14145	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_28097	chr13	45866399	45866661	+	16.58591	NA	Intergenic	Intergenic	45214	NR_002967	677814	Hs.374596	NR_002967		SNORA31	ACA31	small nucleolar RNA, H/ACA box 31	snoRNA
19-PTNLD28-TUMOR_peak_85674	chr6	16741408	16741586	+	16.58591	NA	intron (NM_001128164, intron 2 of 7)	intron (NM_001128164, intron 2 of 7)	20224	NM_001128164	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_25710	chr12	96861036	96861212	+	16.58591	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-66758	NM_001170464	5128	Hs.506415	NM_002595	HPRD:09141	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
19-PTNLD28-TUMOR_peak_22363	chr12	430920	431034	+	16.58591	NA	intron (NM_001042603, intron 17 of 27)	intron (NM_001042603, intron 17 of 27)	-58938	NM_016615	6540	Hs.504398	NM_016615	HPRD:10239	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 (neurotransmitter transporter), member 13	protein-coding
19-PTNLD28-TUMOR_peak_74593	chr4	14979520	14979750	+	16.58591	NA	intron (NR_038857, intron 7 of 7)	L2c|LINE|L2	24034	NR_038857	441009	Hs.535004	NR_038857	ENSG00000247624	CPEB2-AS1	-	CPEB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_57565	chr2	194382832	194383020	+	16.58591	NA	Intergenic	MER72B|LTR|ERV1	768355	NR_002769	64002	Hs.546994	NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1, prostate-specific transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_89835	chr6	146349479	146349595	+	16.58591	NA	promoter-TSS (NM_001278064)	promoter-TSS (NM_001278064)	619	NM_001278065	2911	Hs.32945	NM_000838	HPRD:05129	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCAR13	glutamate receptor, metabotropic 1	protein-coding
19-PTNLD28-TUMOR_peak_59701	chr20	7102226	7102343	+	16.58591	NA	Intergenic	L1HS|LINE|L1	132565	NR_110609	101929265	Hs.637730	NR_110609		LINC01428	-	long intergenic non-protein coding RNA 1428	ncRNA
19-PTNLD28-TUMOR_peak_30043	chr14	42456037	42456239	+	16.58591	NA	Intergenic	Intergenic	379374	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_25803	chr12	100879874	100880013	+	16.58591	NA	intron (NM_005123, intron 1 of 10)	MIRc|SINE|MIR	12392	NM_005123	9971	Hs.282735	NM_005123	HPRD:04827	NR1H4	BAR|FXR|HRR-1|HRR1|RIP14	nuclear receptor subfamily 1, group H, member 4	protein-coding
19-PTNLD28-TUMOR_peak_54444	chr2	99683161	99683342	+	16.58591	NA	intron (NM_182911, intron 14 of 19)	intron (NM_182911, intron 14 of 19)	74786	NM_182911	80705	Hs.120267	NM_025244	HPRD:06202	TSGA10	CEP4L|CT79	testis specific, 10	protein-coding
19-PTNLD28-TUMOR_peak_77129	chr4	138453402	138453800	+	16.58591	NA	promoter-TSS (NM_001300828)	promoter-TSS (NM_001300828)	51	NM_019035	54510	Hs.591691	NM_019035	HPRD:12205	PCDH18	PCDH68L	protocadherin 18	protein-coding
19-PTNLD28-TUMOR_peak_25960	chr12	105454580	105454782	+	16.58591	NA	intron (NM_001034173, intron 9 of 22)	intron (NM_001034173, intron 9 of 22)	23660	NR_027752	160428	Hs.42572	NM_001034173	HPRD:18742	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding
19-PTNLD28-TUMOR_peak_102335	chr9	17776843	17777066	+	16.58591	NA	intron (NM_003026, intron 3 of 8)	MER63A|DNA|hAT-Blackjack	198002	NM_003026	6456	Hs.75149	NM_003026	HPRD:05125	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3-domain GRB2-like 2	protein-coding
19-PTNLD28-TUMOR_peak_102137	chr9	7402176	7402321	+	16.58591	NA	Intergenic	Intergenic	397551	NM_033428	90871	Hs.7517	NM_033428	HPRD:12939	TMEM261	C9orf123	transmembrane protein 261	protein-coding
19-PTNLD28-TUMOR_peak_8783	chr1	183753513	183753797	+	16.58591	NA	intron (NM_001297670, intron 2 of 17)	intron (NM_001297670, intron 2 of 17)	-20560	NM_001297671	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
19-PTNLD28-TUMOR_peak_101029	chr8	132353291	132353523	+	16.58591	NA	Intergenic	Intergenic	-300572	NM_001115	114	Hs.591859	NM_001115	HPRD:00051	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_94917	chr7	116356775	116356924	+	16.58591	NA	intron (NM_001127500, intron 2 of 20)	intron (NM_001127500, intron 2 of 20)	44390	NM_001127500	4233	Hs.132966	NM_000245	HPRD:01280	MET	AUTS9|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_68749	chr3	63947613	63947780	+	16.58591	NA	intron (NM_001177387, intron 4 of 12)	intron (NM_001177387, intron 4 of 12)	-5724	NM_001128149	6314	Hs.476595	NM_000333	HPRD:06365	ATXN7	ADCAII|OPCA3|SCA7	ataxin 7	protein-coding
19-PTNLD28-TUMOR_peak_58714	chr2	228523073	228523203	+	16.58591	NA	Intergenic	Intergenic	-25102	NM_020161	56918	Hs.283092	NM_020161	HPRD:13208	C2orf83	-	chromosome 2 open reading frame 83	protein-coding
19-PTNLD28-TUMOR_peak_12614	chr10	28752707	28753016	+	16.58591	NA	Intergenic	ERVL-B4-int|LTR|ERVL	68422	NR_033805	220906	Hs.403253	NR_033805	ENSG00000254635	WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_81464	chr5	107797521	107797651	+	16.58591	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-79787	NM_001163315	64839	Hs.657225	NM_022824	HPRD:10950	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine-rich repeat protein 17	protein-coding
19-PTNLD28-TUMOR_peak_100918	chr8	130365144	130365493	+	16.58591	NA	Intergenic	Intergenic	-111832	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_104997	chr9	102873654	102873875	+	16.58591	NA	intron (NR_051962, intron 2 of 17)	intron (NR_051962, intron 2 of 17)	12262	NR_051962	27130	Hs.558477	NM_014425	HPRD:08356	INVS	INV|NPH2|NPHP2	inversin	protein-coding
19-PTNLD28-TUMOR_peak_82765	chr5	141193750	141193864	+	16.58591	NA	Intergenic	Intergenic	51960	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_52298	chr2	40478352	40478577	+	16.58591	NA	intron (NM_001112800, intron 1 of 8)	intron (NM_001112800, intron 1 of 8)	178980	NM_001112801	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_24006	chr12	47802003	47802304	+	16.58591	NA	Intergenic	MIR|SINE|MIR	-191927	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92361	chr7	45914489	45914658	+	16.58591	NA	Intergenic	Intergenic	-13386	NM_000596	3484	Hs.642938	NM_000596	HPRD:00897	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin-like growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_14432	chr10	77863122	77863302	+	16.58591	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	320693	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_23353	chr12	21036386	21036559	+	16.58591	NA	exon (NM_019844, exon 13 of 16)	exon (NM_019844, exon 13 of 16)	72834	NM_019844	28234	Hs.504966	NM_019844	HPRD:12021	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	solute carrier organic anion transporter family, member 1B3	protein-coding
19-PTNLD28-TUMOR_peak_92609	chr7	54841903	54842140	+	16.58591	NA	intron (NR_110040, intron 1 of 2)	intron (NR_110040, intron 1 of 2)	15015	NR_110040	100996654	Hs.127991	NR_110040		LOC100996654	-	uncharacterized LOC100996654	ncRNA
19-PTNLD28-TUMOR_peak_49668	chr19	48627217	48627400	+	16.58591	NA	intron (NM_001289064, intron 19 of 25)	intron (NM_001289064, intron 19 of 25)	-13199	NM_001159323	8605	Hs.631562	NM_003706	HPRD:04673	PLA2G4C	CPLA2-gamma	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding
19-PTNLD28-TUMOR_peak_34132	chr15	67707597	67707732	+	16.58591	NA	intron (NR_040051, intron 5 of 5)	intron (NR_040051, intron 5 of 5)	105647	NR_040055	100506686	Hs.656245	NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70173	chr3	122621161	122621490	+	16.58591	NA	Intergenic	AluJo|SINE|Alu	15965	NR_024618	100129550	Hs.61558	NR_024618	ENSG00000273033	LOC100129550	-	uncharacterized LOC100129550	ncRNA
19-PTNLD28-TUMOR_peak_9920	chr1	211056300	211056443	+	16.58591	NA	intron (NM_172362, intron 7 of 10)	intron (NM_172362, intron 7 of 10)	251086	NM_002238	3756	Hs.553187	NM_002238		KCNH1	EAG|EAG1|Kv10.1|h-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding
19-PTNLD28-TUMOR_peak_94857	chr7	112075349	112075496	+	16.58591	NA	intron (NM_001197080, intron 1 of 11)	intron (NM_001197080, intron 1 of 11)	12223	NM_001197080	3475	Hs.7879	NM_001550		IFRD1	PC4|TIS7	interferon-related developmental regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_31235	chr14	74129272	74129488	+	16.58591	NA	intron (NM_001201366, intron 5 of 8)	MLT1D|LTR|ERVL-MaLR	17802	NM_001201366	83544	Hs.271270	NM_031427	HPRD:16616	DNAL1	C14orf168|CILD16	dynein, axonemal, light chain 1	protein-coding
19-PTNLD28-TUMOR_peak_83709	chr5	167361677	167361847	+	16.58591	NA	intron (NM_001122679, intron 3 of 28)	intron (NM_001122679, intron 3 of 28)	297615	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_82005	chr5	128241348	128241460	+	16.58591	NA	Intergenic	Intergenic	-59806	NM_014031	28965	Hs.49765	NM_014031	HPRD:09173	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_63369	chr21	36772842	36772993	+	16.58591	NA	intron (NR_073512, intron 2 of 2)	intron (NR_073512, intron 2 of 2)	180145	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_33573	chr15	51892458	51892606	+	16.58591	NA	intron (NM_001174116, intron 1 of 42)	MER54A|LTR|ERVL	22435	NM_015263	23312	Hs.511386	NM_015263	HPRD:10188	DMXL2	RC3	Dmx-like 2	protein-coding
19-PTNLD28-TUMOR_peak_87798	chr6	46291153	46291388	+	16.58591	NA	intron (NM_001251973, intron 2 of 4)	intron (NM_001251973, intron 2 of 4)	2359	NM_005822	10231	Hs.440168	NM_005822	HPRD:05342	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
19-PTNLD28-TUMOR_peak_28418	chr13	67461328	67461473	+	16.58591	NA	intron (NR_046527, intron 4 of 5)	intron (NR_046527, intron 4 of 5)	62099	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_91487	chr7	20308552	20308722	+	16.58591	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-27694	NR_110117	101927769	Hs.256080	NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
19-PTNLD28-TUMOR_peak_68052	chr3	48586262	48586409	+	16.58591	NA	intron (NM_004567, intron 3 of 13)	intron (NM_004567, intron 3 of 13)	1119	NR_106881	102465494		NR_106881		MIR6823	hsa-mir-6823	microRNA 6823	ncRNA
19-PTNLD28-TUMOR_peak_28460	chr13	73822953	73823078	+	16.58591	NA	Intergenic	Intergenic	190085	NM_001730	688	Hs.508234	NM_001730	HPRD:04212	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_57699	chr2	200025509	200025686	+	16.58591	NA	Intergenic	Intergenic	297222	NM_001172509	23314	Hs.516617	NM_015265	HPRD:12178	SATB2	GLSS	SATB homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_35405	chr15	98721229	98721442	+	16.58591	NA	Intergenic	Intergenic	-89353	NR_120325	101927332		NR_120325		LOC101927332	-	uncharacterized LOC101927332	ncRNA
19-PTNLD28-TUMOR_peak_74913	chr4	35684360	35684482	+	16.58591	NA	Intergenic	L1PA3|LINE|L1	-561317	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
19-PTNLD28-TUMOR_peak_90376	chr6	160669689	160669850	+	16.58591	NA	intron (NM_003058, intron 4 of 10)	MER117|DNA|hAT-Charlie	10194	NM_003058	6582	Hs.436385	NM_003058	HPRD:04008	SLC22A2	OCT2	solute carrier family 22 (organic cation transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_71440	chr3	143247840	143247977	+	16.58591	NA	intron (NM_173653, intron 9 of 15)	intron (NM_173653, intron 9 of 15)	186820	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49437	chr19	46240343	46240504	+	16.58591	NA	Intergenic	AluSq2|SINE|Alu	-2465	NR_038267	388553	Hs.721835	NR_038267	ENSG00000237452	LOC388553	-	uncharacterized LOC388553	ncRNA
19-PTNLD28-TUMOR_peak_76423	chr4	103131560	103131689	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	113845	NM_001135148	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_77486	chr4	148292886	148293169	+	16.58591	NA	Intergenic	L1MC3|LINE|L1	-109042	NM_001256283	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_56942	chr2	172247536	172247701	+	16.58591	NA	intron (NM_024770, intron 2 of 9)	Tigger1|DNA|TcMar-Tigger	-43143	NM_025000	80067	Hs.659439	NM_025000	HPRD:08579	DCAF17	C2orf37	DDB1 and CUL4 associated factor 17	protein-coding
19-PTNLD28-TUMOR_peak_76250	chr4	90148225	90148388	+	16.58591	NA	Intergenic	Intergenic	80855	NM_198281	285513	Hs.605082	NM_198281		GPRIN3	GRIN3	GPRIN family member 3	protein-coding
19-PTNLD28-TUMOR_peak_15886	chr10	119597842	119597984	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	208201	NM_014904	22841	Hs.173656	NM_014904	HPRD:10548	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2 (class I)	protein-coding
19-PTNLD28-TUMOR_peak_75574	chr4	68838917	68839124	+	16.58591	NA	Intergenic	L1PA2|LINE|L1	-9788	NM_182606	339967	Hs.450110	NM_182606	HPRD:07123	TMPRSS11A	ECRG1	transmembrane protease, serine 11A	protein-coding
19-PTNLD28-TUMOR_peak_29067	chr13	111100756	111100887	+	16.58591	NA	intron (NM_001846, intron 18 of 47)	intron (NM_001846, intron 18 of 47)	59705	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92658	chr7	55601109	55601334	+	16.58591	NA	intron (NM_030796, intron 1 of 4)	intron (NM_030796, intron 1 of 4)	4188	NM_001284284	81552	Hs.488307	NM_030796	HPRD:08526	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61829	chr20	49151303	49151464	+	16.58591	NA	intron (NM_001278618, intron 1 of 8)	AluJr|SINE|Alu	24525	NM_001278618	5770	Hs.417549	NM_002827	HPRD:01477	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
19-PTNLD28-TUMOR_peak_91471	chr7	20123508	20123690	+	16.58591	NA	intron (NR_110114, intron 1 of 5)	LTR78|LTR|ERV1	56450	NR_110114	101927668	Hs.715900	NR_110114	ENSG00000243004	LOC101927668	-	uncharacterized LOC101927668	ncRNA
19-PTNLD28-TUMOR_peak_20934	chr11	105458856	105459035	+	16.58591	NA	Intergenic	Intergenic	-21855	NM_000829	2893	Hs.503743	NM_000829	HPRD:00694	GRIA4	GLUR4|GLUR4C|GLURD|GluA4	glutamate receptor, ionotropic, AMPA 4	protein-coding
19-PTNLD28-TUMOR_peak_99490	chr8	92261380	92261524	+	16.58591	NA	promoter-TSS (NM_134266)	promoter-TSS (NM_134266)	-64	NM_134266	115111	Hs.354013	NM_052832	HPRD:10533	SLC26A7	SUT2	solute carrier family 26 (anion exchanger), member 7	protein-coding
19-PTNLD28-TUMOR_peak_18248	chr11	44528015	44528161	+	16.58591	NA	Intergenic	Intergenic	-59053	NM_002231	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_74563	chr4	13666322	13666435	+	16.58591	NA	intron (NR_121681, intron 2 of 3)	L1PA3|LINE|L1	9575	NR_121681	101929071	Hs.543714	NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
19-PTNLD28-TUMOR_peak_50890	chr2	7532375	7532522	+	16.58591	NA	Intergenic	MIRb|SINE|MIR	-28944	NR_038432	100506274	Hs.177930	NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
19-PTNLD28-TUMOR_peak_102600	chr9	29966334	29966501	+	16.58591	NA	Intergenic	Intergenic	442035	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_65475	chr22	38541907	38542078	+	16.58591	NA	intron (NM_001004426, intron 2 of 15)	AluJb|SINE|Alu	-35316	NM_025045	80115	Hs.474822	NM_025045	HPRD:07997	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
19-PTNLD28-TUMOR_peak_105280	chr9	111648273	111648460	+	16.58591	NA	intron (NM_003640, intron 29 of 36)	MER76|LTR|ERVL	23858	NM_006687	10881	Hs.123530	NM_006687	HPRD:11976	ACTL7A	-	actin-like 7A	protein-coding
19-PTNLD28-TUMOR_peak_77086	chr4	132776739	132776880	+	16.58591	NA	Intergenic	LTR16B|LTR|ERVL	-1293661	NM_032961	57575	Hs.192859	NM_020815		PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
19-PTNLD28-TUMOR_peak_11242	chr1	239713592	239713736	+	16.58591	NA	Intergenic	L2c|LINE|L2	-78709	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	cholinergic receptor, muscarinic 3	protein-coding
19-PTNLD28-TUMOR_peak_104620	chr9	95709629	95709913	+	16.58591	NA	5' UTR (NM_001083536, exon 1 of 18)	5' UTR (NM_001083536, exon 1 of 18)	170	NM_001083536	89846	Hs.411081	NM_033086	HPRD:10957	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_35387	chr15	98452668	98452827	+	16.58591	NA	Intergenic	Intergenic	-35088	NR_024173	91948	Hs.130423	NR_024172	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
19-PTNLD28-TUMOR_peak_60015	chr20	17940386	17940515	+	16.58591	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	3139	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
19-PTNLD28-TUMOR_peak_109812	chrX	151297627	151297757	+	16.58591	NA	intron (NM_001204811, intron 2 of 3)	intron (NM_001204811, intron 2 of 3)	9358	NM_001251828	4109	Hs.18048	NM_021048	HPRD:02280	MAGEA10	CT1.10|MAGE10	melanoma antigen family A, 10	protein-coding
19-PTNLD28-TUMOR_peak_31645	chr14	90747651	90747849	+	16.58591	NA	intron (NM_017970, intron 12 of 13)	AluJb|SINE|Alu	24856	NM_002802	5700	Hs.356654	NM_002802	HPRD:04084	PSMC1	P26S4|S4|p56	proteasome (prosome, macropain) 26S subunit, ATPase, 1	protein-coding
19-PTNLD28-TUMOR_peak_58211	chr2	213650321	213650464	+	16.58591	NA	Intergenic	L1PA4|LINE|L1	-140589	NR_039935	100616267		NR_039935	miRBase:MI0017419	MIR4776-1	-	microRNA 4776-1	ncRNA
19-PTNLD28-TUMOR_peak_80536	chr5	70790120	70790307	+	16.58591	NA	intron (NM_018429, intron 11 of 38)	AluJb|SINE|Alu	38771	NM_018429	55814	Hs.258272	NM_018429	HPRD:06114	BDP1	HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
19-PTNLD28-TUMOR_peak_75928	chr4	81243997	81244171	+	16.58591	NA	Intergenic	Intergenic	-12790	NM_001206997	255119	Hs.527104	NM_152770	HPRD:14597	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
19-PTNLD28-TUMOR_peak_40210	chr17	11085770	11086096	+	16.58591	NA	Intergenic	Intergenic	-58807	NM_207386	388336	Hs.592124	NM_175903	HPRD:13507	SHISA6	-	shisa family member 6	protein-coding
19-PTNLD28-TUMOR_peak_76717	chr4	116034839	116035248	+	16.58591	NA	promoter-TSS (NM_022569)	promoter-TSS (NM_022569)	-11	NM_022569	64579	Hs.591700	NM_022569	HPRD:10116	NDST4	NDST-4|NHSST4	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	protein-coding
19-PTNLD28-TUMOR_peak_104308	chr9	89336825	89337002	+	16.58591	NA	Intergenic	Intergenic	225191	NM_002048	2619	Hs.65029	NM_002048	HPRD:00747	GAS1	-	growth arrest-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_34794	chr15	81227146	81227300	+	16.58591	NA	intron (NM_018689, intron 22 of 28)	L2|LINE|L2	54982	NM_015154	23184	Hs.578450	NM_015154	HPRD:12129	MESDC2	BOCA|MESD	mesoderm development candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_83551	chr5	158737621	158737865	+	16.58591	NA	Intergenic	Intergenic	19738	NM_002187	3593	Hs.674	NM_002187	HPRD:01194	IL12B	CLMF|CLMF2|IL-12B|NKSF|NKSF2	interleukin 12B	protein-coding
19-PTNLD28-TUMOR_peak_108925	chrX	95204729	95204946	+	16.58591	NA	Intergenic	Intergenic	388064	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_75391	chr4	56419667	56419880	+	16.58591	NA	Intergenic	MER51A|LTR|ERV1	-6697	NM_004898	9575	Hs.436975	NM_004898	HPRD:03508	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
19-PTNLD28-TUMOR_peak_45358	chr18	39772929	39773128	+	16.58591	NA	intron (NR_046455, intron 1 of 4)	MER44B|DNA|TcMar-Tigger	6395	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_68803	chr3	65005196	65005377	+	16.58591	NA	Intergenic	Intergenic	299603	NR_030317	693126		NR_030317	miRBase:MI0003598	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
19-PTNLD28-TUMOR_peak_94916	chr7	116346783	116346923	+	16.58591	NA	intron (NM_001127500, intron 2 of 20)	AmnSINE1|SINE|Deu	34394	NM_001127500	4233	Hs.132966	NM_000245	HPRD:01280	MET	AUTS9|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_75503	chr4	60419169	60419312	+	16.58591	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-1943599	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_21134	chr11	111648140	111648270	+	16.58591	NA	Intergenic	Intergenic	-11036	NM_181699	5519	Hs.269128	NM_002716	HPRD:04384	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2, regulatory subunit A, beta	protein-coding
19-PTNLD28-TUMOR_peak_28476	chr13	75000502	75000758	+	16.58591	NA	intron (NR_047005, intron 3 of 4)	L1HS|LINE|L1	7320	NR_047005	100874151	Hs.564552	NR_047005	ENSG00000226240	LINC00381	-	long intergenic non-protein coding RNA 381	ncRNA
19-PTNLD28-TUMOR_peak_43072	chr17	65604924	65605076	+	16.58591	NA	intron (NM_181671, intron 5 of 9)	L1MC4|LINE|L1	-109061	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_110027	chrX	154167782	154167932	+	16.58591	NA	intron (NM_000132, intron 13 of 25)	L1PA3|LINE|L1	-52124	NR_036260	100422977		NR_036260	miRBase:MI0015972	MIR1184-3	-	microRNA 1184-3	ncRNA
19-PTNLD28-TUMOR_peak_89328	chr6	124669460	124669629	+	16.58591	NA	intron (NM_001300740, intron 1 of 5)	L1PA4|LINE|L1	65393	NM_001300740	154215	Hs.656604	NM_153355	HPRD:18168	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Na+/K+ transporting ATPase interacting 2	protein-coding
19-PTNLD28-TUMOR_peak_91837	chr7	30358199	30358382	+	16.58591	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-28784	NR_037513	100500883		NR_037513		MIR550B1	-	microRNA 550b-1	ncRNA
19-PTNLD28-TUMOR_peak_104496	chr9	92522700	92522871	+	16.58591	NA	Intergenic	Intergenic	-208913	NR_109791	101927847	Hs.584312	NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
19-PTNLD28-TUMOR_peak_52770	chr2	53285799	53285954	+	16.58591	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-709053	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_71511	chr3	146031701	146031895	+	16.58591	NA	Intergenic	AluJr|SINE|Alu	-62832	NM_001128306	57088	Hs.477869	NM_020353	HPRD:07401	PLSCR4	TRA1	phospholipid scramblase 4	protein-coding
19-PTNLD28-TUMOR_peak_32075	chr14	100883880	100884074	+	16.58591	NA	intron (NM_001161476, intron 2 of 6)	intron (NM_001161476, intron 2 of 6)	41144	NM_024515	79446	Hs.497600	NM_024515	HPRD:14649	WDR25	C14orf67	WD repeat domain 25	protein-coding
19-PTNLD28-TUMOR_peak_109334	chrX	119631924	119632124	+	16.58591	NA	Intergenic	Intergenic	-28820	NM_013995	3920	Hs.496684	NM_002294	HPRD:02396	LAMP2	CD107b|LAMP-2|LAMPB|LGP110	lysosomal-associated membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_71854	chr3	155215830	155215960	+	16.58591	NA	intron (NM_014996, intron 13 of 21)	Tigger7|DNA|TcMar-Tigger	178210	NM_001130961	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_53196	chr2	66766696	66766869	+	16.58591	NA	intron (NM_002398, intron 8 of 12)	MIR|SINE|MIR	-34380	NR_110156	100507073	Hs.667940	NR_110156		LOC100507073	-	uncharacterized LOC100507073	ncRNA
19-PTNLD28-TUMOR_peak_69440	chr3	100181905	100182100	+	16.58591	NA	Intergenic	Intergenic	-29461	NM_018004	55076	Hs.658956	NM_018004	HPRD:07647	TMEM45A	DERP7	transmembrane protein 45A	protein-coding
19-PTNLD28-TUMOR_peak_88279	chr6	73073617	73073786	+	16.58591	NA	intron (NM_014989, intron 29 of 33)	intron (NM_014989, intron 29 of 33)	-2731	NM_001168411	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_42324	chr17	49469449	49469646	+	16.58591	NA	Intergenic	MLT2F|LTR|ERVL	55471	NR_122104	440446	Hs.626751	NR_122104	HPRD:13466	LOC440446	-	uncharacterized LOC440446	ncRNA
19-PTNLD28-TUMOR_peak_108141	chrX	46630393	46630526	+	16.58591	NA	Intergenic	Intergenic	-11852	NM_001257291	84679	Hs.91389	NM_032591		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
19-PTNLD28-TUMOR_peak_98861	chr8	56826460	56826604	+	16.58591	NA	intron (NM_001111097, intron 1 of 12)	intron (NM_001111097, intron 1 of 12)	34146	NM_002350	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_6152	chr1	143943412	143943786	+	16.57473	NA	Intergenic	Intergenic	-30439	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_22744	chr12	6454622	6454799	+	16.56869	NA	Intergenic	Intergenic	-3427	NM_001065	7132	Hs.279594	NM_001065	HPRD:01861	TNFRSF1A	CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60	tumor necrosis factor receptor superfamily, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_16632	chr11	2024197	2024382	+	16.56626	NA	Intergenic	Intergenic	-5224	NR_002196	283120	Hs.533566	NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2	H19, imprinted maternally expressed transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_44338	chr18	3579813	3579989	+	16.56626	NA	intron (NM_001242764, intron 5 of 9)	intron (NM_001242764, intron 5 of 9)	-14211	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70158	chr3	122398079	122398490	+	16.56582	NA	Intergenic	Intergenic	-1388	NM_017554	54625	Hs.518203	NM_017554	HPRD:11421	PARP14	ARTD8|BAL2|PARP-14|pART8	poly (ADP-ribose) polymerase family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_100013	chr8	107283428	107283623	+	16.56534	NA	intron (NM_018002, intron 1 of 15)	CpG	1119	NM_001198533	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_91679	chr7	25133015	25133208	+	16.56511	NA	Intergenic	MamRep38|DNA|hAT	31869	NM_018947	54205	Hs.437060	NM_018947		CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
19-PTNLD28-TUMOR_peak_42696	chr17	58165683	58165900	+	16.56511	NA	promoter-TSS (NR_030732)	promoter-TSS (NR_030732)	37	NR_030732	645638	Hs.463652	NR_030732	ENSG00000261040	WFDC21P	LNCDC|lnc-DC	WAP four-disulfide core domain 21, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_97375	chr8	18298989	18299242	+	16.56511	NA	Intergenic	Intergenic	50360	NM_000015	10	Hs.2	NM_000015	HPRD:02000	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_100004	chr8	107093111	107093490	+	16.56511	NA	Intergenic	Intergenic	-20569	NR_125797	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56569	chr2	160306773	160306962	+	16.56511	NA	intron (NM_013450, intron 4 of 36)	AluSz6|SINE|Alu	-163631	NM_001128212	151525	Hs.20848	NM_152528	HPRD:08773	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_19205	chr11	64764394	64764617	+	16.56511	NA	promoter-TSS (NM_138456)	promoter-TSS (NM_138456)	12	NM_138456	116071	Hs.124840	NM_138456	HPRD:14470	BATF2	SARI	basic leucine zipper transcription factor, ATF-like 2	protein-coding
19-PTNLD28-TUMOR_peak_43235	chr17	70636899	70637270	+	16.56511	NA	promoter-TSS (NR_033876)	promoter-TSS (NR_033876)	-473	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	ncRNA
19-PTNLD28-TUMOR_peak_32397	chr14	106518218	106518448	+	16.56511	NA	Intergenic	Intergenic	-79975	NR_002224	8755	Hs.662288	NR_002224	ENSG00000233988	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_38321	chr16	67302261	67302419	+	16.56511	NA	intron (NM_004594, intron 15 of 15)	AluJr|SINE|Alu	-9073	NM_015432	25894	Hs.188781	NM_015432	HPRD:10890	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding
19-PTNLD28-TUMOR_peak_91203	chr7	6855722	6855885	+	16.56511	NA	intron (NM_198097, intron 7 of 14)	intron (NM_198097, intron 7 of 14)	10123	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_46916	chr19	6538276	6538601	+	16.56511	NA	Intergenic	AluY|SINE|Alu	7428	NM_003811	8744	Hs.1524	NM_003811	HPRD:05861	TNFSF9	4-1BB-L|CD137L	tumor necrosis factor (ligand) superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_70544	chr3	127203625	127204063	+	16.56511	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	52779	NR_125397	101927149	Hs.407798	NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
19-PTNLD28-TUMOR_peak_24331	chr12	52611055	52611357	+	16.56502	NA	intron (NR_027358, intron 3 of 4)	intron (NR_027358, intron 3 of 4)	6492	NR_027358	283404	Hs.662443	NR_027358	ENSG00000258279	LINC00592	-	long intergenic non-protein coding RNA 592	ncRNA
19-PTNLD28-TUMOR_peak_74231	chr4	7086443	7086717	+	16.55269	NA	Intergenic	MER41A|LTR|ERV1	-16780	NM_025196	80273	Hs.443723	NM_025196		GRPEL1	HMGE	GrpE-like 1, mitochondrial (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_14387	chr10	76962566	76962753	+	16.55269	NA	Intergenic	MER115|DNA|hAT-Tip100	-7253	NM_001184823	7417	Hs.355927	NM_003375	HPRD:01904	VDAC2	POR	voltage-dependent anion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_36972	chr16	27338219	27338586	+	16.55269	NA	intron (NM_001257406, intron 1 of 9)	intron (NM_001257406, intron 1 of 9)	13172	NM_001257406	3566	Hs.513457	NM_000418	HPRD:00990	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
19-PTNLD28-TUMOR_peak_66019	chr22	46991913	46992212	+	16.55269	NA	Intergenic	Intergenic	-30596	NM_015124	23151	Hs.475150	NM_015124	HPRD:11107	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_29871	chr14	35098925	35099153	+	16.55269	NA	intron (NM_021249, intron 1 of 12)	CpG	276	NM_021249	58533	Hs.356647	NM_021249	HPRD:12086	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
19-PTNLD28-TUMOR_peak_101796	chr8	145926307	145926471	+	16.55269	NA	Intergenic	Intergenic	54581	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
19-PTNLD28-TUMOR_peak_10857	chr1	231968064	231968229	+	16.55269	NA	intron (NM_001164541, intron 9 of 9)	HERVH-int|LTR|ERV1	-13883	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_33792	chr15	59907222	59907424	+	16.55269	NA	intron (NM_004751, intron 1 of 2)	LTR50|LTR|ERVL	3341	NM_004751	9245	Hs.194710	NM_004751	HPRD:06018	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
19-PTNLD28-TUMOR_peak_83399	chr5	154120687	154120875	+	16.55269	NA	intron (NM_015315, intron 1 of 18)	MIR3|SINE|MIR	28319	NM_015315	23367	Hs.292078	NM_015315	HPRD:11225	LARP1	LARP	La ribonucleoprotein domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_31804	chr14	94157876	94158100	+	16.54953	NA	intron (NM_020818, intron 46 of 49)	intron (NM_020818, intron 46 of 49)	96778	NM_178013	145270	Hs.432401	NM_178004	HPRD:17907	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
19-PTNLD28-TUMOR_peak_81237	chr5	95769972	95770086	+	16.54953	NA	Intergenic	Intergenic	-1044	NM_000439	5122	Hs.78977	NM_000439	HPRD:01201	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
19-PTNLD28-TUMOR_peak_4250	chr1	68363263	68363641	+	16.54953	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	-64297	NM_018841	55970	Hs.431101	NM_018841	HPRD:13592	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
19-PTNLD28-TUMOR_peak_15384	chr10	104594835	104594963	+	16.54953	NA	intron (NM_000102, intron 2 of 7)	intron (NM_000102, intron 2 of 7)	2391	NM_000102	1586	Hs.438016	NM_000102	HPRD:01944	CYP17A1	CPT7|CYP17|P450C17|S17AH	cytochrome P450, family 17, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_97473	chr8	20400450	20400663	+	16.54953	NA	Intergenic	Intergenic	267272	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_50977	chr2	9505452	9505958	+	16.54953	NA	intron (NM_003887, intron 15 of 27)	intron (NM_003887, intron 15 of 27)	57938	NM_004763	9270	Hs.467662	NM_004763	HPRD:06194	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_23773	chr12	39193771	39194039	+	16.54953	NA	intron (NM_153634, intron 6 of 19)	L1HS|LINE|L1	105515	NM_153634	144402	Hs.40910	NM_153634	HPRD:16747	CPNE8	-	copine VIII	protein-coding
19-PTNLD28-TUMOR_peak_86773	chr6	32915730	32915990	+	16.54953	NA	TTS (NM_006120).6	TTS (NM_006120).6	5039	NM_006120	3108	Hs.728759	NM_006120	HPRD:00830	HLA-DMA	D6S222E|DMA|HLADM|RING6	major histocompatibility complex, class II, DM alpha	protein-coding
19-PTNLD28-TUMOR_peak_12761	chr10	31072931	31073297	+	16.54953	NA	Intergenic	Intergenic	91911	NR_036438	645954	Hs.408581	NR_036438	ENSG00000234814	SVILP1	-	supervillin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_65028	chr22	30178159	30178348	+	16.54381	NA	Intergenic	Intergenic	14895	NM_001003684	29796	Hs.284292	NM_013387	HPRD:13691	UQCR10	HSPC051|HSPC151|QCR9|UCCR7.2|UCRC	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding
19-PTNLD28-TUMOR_peak_46468	chr19	202086	202325	+	16.53556	NA	promoter-TSS (NR_028324)	promoter-TSS (NR_028324)	4	NR_028324	399844	Hs.356758	NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
19-PTNLD28-TUMOR_peak_3012	chr1	43991900	43992046	+	16.53542	NA	Intergenic	Intergenic	-4574	NM_002840	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_13980	chr10	70092480	70092723	+	16.53542	NA	promoter-TSS (NM_022129)	promoter-TSS (NM_022129)	83	NM_001033083	64081	Hs.198158	NM_022129	HPRD:14366	PBLD	MAWBP|MAWDBP	phenazine biosynthesis-like protein domain containing	protein-coding
19-PTNLD28-TUMOR_peak_99745	chr8	101788050	101788227	+	16.53199	NA	Intergenic	AluSz|SINE|Alu	-53823	NM_002568	26986	Hs.387804	NM_002568	HPRD:05247	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_109422	chrX	129059430	129059932	+	16.53199	NA	intron (NM_001166221, intron 11 of 13)	L3|LINE|CR1	19584	NM_006649	10813	Hs.458598	NM_006649	HPRD:06712	UTP14A	NYCO16|SDCCAG16|dJ537K23.3	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_93719	chr7	83277832	83278469	+	16.53199	NA	5' UTR (NM_012431, exon 1 of 17)	5' UTR (NM_012431, exon 1 of 17)	329	NM_012431	9723	Hs.528721	NM_012431	HPRD:11545	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
19-PTNLD28-TUMOR_peak_108148	chrX	46771671	46771948	+	16.53199	NA	promoter-TSS (NM_014735)	promoter-TSS (NM_014735)	-59	NM_014735	9767	Hs.371977	NM_014735	HPRD:06675	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
19-PTNLD28-TUMOR_peak_46944	chr19	7013731	7014042	+	16.53199	NA	Intergenic	Intergenic	-7460	NR_024372	497049	Hs.367930	NM_001011541		FLJ25758	-	MAP/microtubule affinity-regulating kinase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_57074	chr2	175584593	175584766	+	16.53199	NA	Intergenic	CpG	-37052	NM_001077269	7456	Hs.128067	NM_003387	HPRD:03835	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_86729	chr6	32212765	32212984	+	16.53199	NA	Intergenic	Intergenic	-21030	NM_004557	4855	Hs.436100	NM_004557	HPRD:01290	NOTCH4	INT3	notch 4	protein-coding
19-PTNLD28-TUMOR_peak_10864	chr1	232260083	232260308	+	16.53199	NA	Intergenic	L1MB5|LINE|L1	-305932	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_40773	chr17	26725488	26725830	+	16.53199	NA	3' UTR (NM_001242366, exon 5 of 5)	3' UTR (NM_001242366, exon 5 of 5)	7571	NM_080669	113235	Hs.446689	NM_080669	HPRD:14715	SLC46A1	G21|HCP1|PCFT	solute carrier family 46 (folate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_80391	chr5	67602554	67602776	+	16.53199	NA	Intergenic	Intergenic	14269	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_88684	chr6	89116652	89116786	+	16.53199	NA	Intergenic	L1PA3|LINE|L1	132369	NR_110867	101928936	Hs.533080	NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA
19-PTNLD28-TUMOR_peak_89291	chr6	121069911	121070106	+	16.53199	NA	Intergenic	L1PA3|LINE|L1	585638	NR_104452	221322	Hs.121396	NM_152730	HPRD:12867	TBC1D32	BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	TBC1 domain family, member 32	protein-coding
19-PTNLD28-TUMOR_peak_71368	chr3	141547828	141548149	+	16.53077	NA	Intergenic	Intergenic	-47482	NM_001679	483	Hs.477789	NM_001679	HPRD:03521	ATP1B3	ATPB-3|CD298	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_38343	chr16	67462170	67462282	+	16.53077	NA	Intergenic	Intergenic	-2810	NM_000196	3291	Hs.1376	NM_000196	HPRD:01958	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid (11-beta) dehydrogenase 2	protein-coding
19-PTNLD28-TUMOR_peak_79097	chr5	16467581	16467760	+	16.53026	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-1776	NM_033414	90441	Hs.60300	NM_033414	HPRD:12278	ZNF622	ZPR9	zinc finger protein 622	protein-coding
19-PTNLD28-TUMOR_peak_24124	chr12	49662503	49662713	+	16.52986	NA	intron (NM_032704, intron 1 of 3)	intron (NM_032704, intron 1 of 3)	3743	NM_032704	84790	Hs.652390	NM_032704	HPRD:06747	TUBA1C	TUBA6|bcm948	tubulin, alpha 1c	protein-coding
19-PTNLD28-TUMOR_peak_87212	chr6	37522294	37522530	+	16.52986	NA	TTS (NR_039669)	TTS (NR_039669)	786	NR_039669	100616413		NR_039669	miRBase:MI0016810	MIR4462	-	microRNA 4462	ncRNA
19-PTNLD28-TUMOR_peak_100689	chr8	126514005	126514644	+	16.52699	NA	Intergenic	Intergenic	69873	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86994	chr6	35262242	35262359	+	16.52544	NA	exon (NM_001292032, exon 12 of 13)	exon (NM_001292032, exon 12 of 13)	-3295	NM_022047	50619	Hs.15476	NM_022047	HPRD:10869	DEF6	IBP|SLAT|SWAP70L	differentially expressed in FDCP 6 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_7158	chr1	155064012	155064331	+	16.52544	NA	Intergenic	Intergenic	12823	NM_004952	1944	Hs.516656	NM_004952	HPRD:03225	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin-A3	protein-coding
19-PTNLD28-TUMOR_peak_7539	chr1	159859877	159860035	+	16.52544	NA	intron (NM_012337, intron 3 of 11)	intron (NM_012337, intron 3 of 11)	9950	NM_012337	25790	Hs.647705	NM_012337	HPRD:05514	CFAP45	CCDC19|NESG1	cilia and flagella associated protein 45	protein-coding
19-PTNLD28-TUMOR_peak_66109	chr22	50731886	50732093	+	16.52544	NA	intron (NM_012401, intron 2 of 36)	intron (NM_012401, intron 2 of 36)	14012	NM_012401	23654	Hs.3989	NM_012401	HPRD:05050	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
19-PTNLD28-TUMOR_peak_2228	chr1	33814355	33814528	+	16.52544	NA	intron (NM_198040, intron 8 of 13)	intron (NM_198040, intron 8 of 13)	1058	NM_004427	1912	Hs.524271	NM_004427	HPRD:10340	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_14151	chr10	72563504	72564107	+	16.52493	NA	Intergenic	Intergenic	-11899	NM_003901	8879	Hs.499984	NM_003901	HPRD:07224	SGPL1	S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
19-PTNLD28-TUMOR_peak_24148	chr12	49974406	49974548	+	16.52110	NA	Intergenic	Intergenic	-12549	NM_006337	10445	Hs.25313	NM_006337	HPRD:11298	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20048	chr11	74925491	74925668	+	16.52110	NA	Intergenic	Intergenic	-26371	NM_001195528	100507050	Hs.577323	NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein-like	protein-coding
19-PTNLD28-TUMOR_peak_12784	chr10	31475494	31475860	+	16.52110	NA	Intergenic	Intergenic	132347	NR_024284	220930	Hs.372654	NR_024284		ZEB1-AS1	-	ZEB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_101960	chr9	2157773	2158026	+	16.52110	NA	promoter-TSS (NM_001289399)	promoter-TSS (NM_001289399)	219	NM_001289398	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_80744	chr5	74759639	74759808	+	16.52110	NA	intron (NM_005713, intron 2 of 17)	LOR1a|LTR|ERV1	47731	NM_005713	10087	Hs.270437	NM_005713	HPRD:05246	COL4A3BP	CERT|CERTL|GPBP|STARD11	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding
19-PTNLD28-TUMOR_peak_81018	chr5	82864072	82864232	+	16.52110	NA	intron (NM_001126336, intron 10 of 12)	intron (NM_001126336, intron 10 of 12)	96659	NM_001164097	1462	Hs.643801	NM_004385	HPRD:00340	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
19-PTNLD28-TUMOR_peak_5537	chr1	112024350	112024530	+	16.52110	NA	Intergenic	Intergenic	7949	NM_001300835	128346	Hs.288010	NM_174896	HPRD:14495	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
19-PTNLD28-TUMOR_peak_25248	chr12	70876684	70876832	+	16.52110	NA	Intergenic	LTR23|LTR|ERV1	116696	NM_014505	27345	Hs.525529	NM_014505	HPRD:05564	KCNMB4	-	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding
19-PTNLD28-TUMOR_peak_8279	chr1	173539606	173539962	+	16.52110	NA	intron (NM_178527, intron 9 of 27)	L1MA2|LINE|L1	32449	NM_178527	284525	Hs.494981	NM_178527	HPRD:15398	SLC9C2	SLC9A11	solute carrier family 9, member C2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_46149	chr18	62956250	62956406	+	16.52110	NA	Intergenic	Intergenic	-461160	NM_033646	1005	Hs.657522	NM_004361	HPRD:12049	CDH7	CDH7L1	cadherin 7, type 2	protein-coding
19-PTNLD28-TUMOR_peak_42435	chr17	54731395	54731540	+	16.52110	NA	Intergenic	Intergenic	60407	NM_005450	9241	Hs.248201	NM_005450	HPRD:04291	NOG	SYM1|SYNS1	noggin	protein-coding
19-PTNLD28-TUMOR_peak_103905	chr9	77791076	77791227	+	16.52110	NA	Intergenic	Intergenic	87753	NM_012383	26578	Hs.494192	NM_012383	HPRD:17808	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_30692	chr14	62287053	62287233	+	16.52110	NA	Intergenic	Intergenic	58068	NM_003082	6617	Hs.179312	NM_003082	HPRD:08998	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex, polypeptide 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_23144	chr12	13069035	13069476	+	16.51668	NA	TTS (NR_030345)	TTS (NR_030345)	492	NR_030345	693199		NR_030345	miRBase:MI0003627	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
19-PTNLD28-TUMOR_peak_48915	chr19	39086871	39087544	+	16.51668	NA	intron (NM_007181, intron 25 of 31)	CpG-13665	21468	NM_007181	11184	Hs.95424	NM_007181	HPRD:03583	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_3824	chr1	59282038	59282248	+	16.51166	NA	intron (NR_108106, intron 1 of 1)	CpG	31320	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_73418	chr3	194493998	194494160	+	16.50664	NA	intron (NR_037891, intron 3 of 3)	intron (NR_037891, intron 3 of 3)	64929	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	ncRNA
19-PTNLD28-TUMOR_peak_47909	chr19	17534391	17534574	+	16.50510	NA	intron (NM_138401, intron 5 of 8)	intron (NM_138401, intron 5 of 8)	3826	NM_138401	93343	Hs.515243	NM_138401	HPRD:14298	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
19-PTNLD28-TUMOR_peak_52296	chr2	40467342	40467505	+	16.49632	NA	intron (NM_001112800, intron 1 of 8)	intron (NM_001112800, intron 1 of 8)	190021	NM_001112801	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_90591	chr6	168727738	168727907	+	16.49632	NA	Intergenic	MLT2B4|LTR|ERVL	-7388	NM_214462	168002	Hs.673059	NM_214462	HPRD:12345	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled-binding antagonist of beta-catenin 2	protein-coding
19-PTNLD28-TUMOR_peak_100764	chr8	127626772	127626981	+	16.49632	NA	Intergenic	Intergenic	-56165	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_104933	chr9	101192086	101192317	+	16.49632	NA	intron (NM_005458, intron 7 of 18)	L2a|LINE|L2	-174198	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_102535	chr9	26746740	26746877	+	16.49632	NA	Intergenic	MIRb|SINE|MIR	146018	NM_024828	79886	Hs.178357	NM_024828	HPRD:12981	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_75932	chr4	81393000	81393184	+	16.49632	NA	intron (NM_152770, intron 2 of 5)	intron (NM_152770, intron 2 of 5)	136218	NM_152770	255119	Hs.527104	NM_152770	HPRD:14597	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
19-PTNLD28-TUMOR_peak_93559	chr7	76977881	76978105	+	16.49632	NA	intron (NM_017439, intron 19 of 30)	intron (NM_017439, intron 19 of 30)	-66522	NR_110073	101927243	Hs.547753	NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
19-PTNLD28-TUMOR_peak_27751	chr13	32605266	32605910	+	16.49632	NA	non-coding (NR_103839, exon 1 of 4)	non-coding (NR_103839, exon 1 of 4)	151	NM_023037	10129	Hs.507669	NM_023037	HPRD:10821	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	furry homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78720	chr5	3311089	3311361	+	16.49632	NA	Intergenic	Intergenic	133276	NR_104617	102467074	Hs.575250	NR_104617		LINC01377	-	long intergenic non-protein coding RNA 1377	ncRNA
19-PTNLD28-TUMOR_peak_34478	chr15	74600278	74600387	+	16.49632	NA	intron (NM_025055, intron 11 of 18)	intron (NM_025055, intron 11 of 18)	-10550	NR_108023	80125	Hs.383206	NM_025055	HPRD:09959	CCDC33	CT61	coiled-coil domain containing 33	protein-coding
19-PTNLD28-TUMOR_peak_43202	chr17	70147747	70148024	+	16.49632	NA	Intergenic	Intergenic	30724	NM_000346	6662	Hs.647409	NM_000346	HPRD:06427	SOX9	CMD1|CMPD1|SRA1	SRY (sex determining region Y)-box 9	protein-coding
19-PTNLD28-TUMOR_peak_56378	chr2	153648583	153648829	+	16.49632	NA	Intergenic	MER50B|LTR|ERV1	74299	NR_024526	151188	Hs.643580	NM_152522	HPRD:12485	ARL6IP6	AIP-6|PFAAP1	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
19-PTNLD28-TUMOR_peak_3760	chr1	57263096	57263274	+	16.49632	NA	intron (NM_001004303, intron 1 of 19)	intron (NM_001004303, intron 1 of 19)	22184	NM_001004303	199920	Hs.437655	NM_001004303	HPRD:14120	C1orf168	-	chromosome 1 open reading frame 168	protein-coding
19-PTNLD28-TUMOR_peak_24725	chr12	57081976	57082489	+	16.49632	NA	promoter-TSS (NM_001282602)	promoter-TSS (NM_001282602)	-40	NM_001282605	10728	Hs.50425	NM_006601	HPRD:06138	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3 (cytosolic)	protein-coding
19-PTNLD28-TUMOR_peak_104384	chr9	90618940	90619102	+	16.49632	NA	Intergenic	Intergenic	-29326	NM_012119	23552	Hs.522274	NM_012119	HPRD:13010	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin-dependent kinase 20	protein-coding
19-PTNLD28-TUMOR_peak_97496	chr8	21121517	21121884	+	16.49632	NA	Intergenic	Intergenic	-34050	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_93007	chr7	67786065	67786238	+	16.49632	NA	Intergenic	MIRb|SINE|MIR	300911	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_62882	chr21	18909654	18909946	+	16.49632	NA	intron (NM_001338, intron 1 of 6)	intron (NM_001338, intron 1 of 6)	24576	NM_001207063	1525	Hs.627078	NM_001338	HPRD:11804	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
19-PTNLD28-TUMOR_peak_107695	chrX	17861053	17861201	+	16.49632	NA	intron (NM_001172743, intron 1 of 2)	intron (NM_001172743, intron 1 of 2)	17820	NR_033348	10742	Hs.446680	NM_021785	HPRD:02199	RAI2	-	retinoic acid induced 2	protein-coding
19-PTNLD28-TUMOR_peak_30988	chr14	69310778	69310958	+	16.49632	NA	Intergenic	Intergenic	-47908	NM_001244701	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_86795	chr6	33112276	33112563	+	16.49632	NA	Intergenic	Intergenic	32126	NR_001435	3116	Hs.665450	NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_43225	chr17	70536484	70536705	+	16.49632	NA	intron (NR_036488, intron 1 of 3)	CpG	52349	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_39315	chr16	87958223	87958446	+	16.49632	NA	intron (NM_001739, intron 2 of 6)	intron (NM_001739, intron 2 of 6)	11778	NM_001739	763	Hs.177446	NM_001739	HPRD:00262	CA5A	CA5|CA5AD|CAV|CAVA	carbonic anhydrase VA, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_102290	chr9	16192317	16192474	+	16.49632	NA	Intergenic	Intergenic	60710	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_92981	chr7	67218986	67219156	+	16.49632	NA	Intergenic	Intergenic	-266169	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_42892	chr17	62611218	62611382	+	16.49632	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	47086	NM_022739	64750	Hs.515011	NM_022739		SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_27912	chr13	40422426	40422547	+	16.49632	NA	Intergenic	L1PA5|LINE|L1	-184214	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_14599	chr10	81963442	81963616	+	16.49595	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	718	NM_001278408	311	Hs.530291	NM_001157	HPRD:03983	ANXA11	ANX11|CAP50	annexin A11	protein-coding
19-PTNLD28-TUMOR_peak_98859	chr8	56814156	56814582	+	16.48766	NA	intron (NM_001111097, intron 1 of 12)	intron (NM_001111097, intron 1 of 12)	21983	NM_002350	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_40286	chr17	15406175	15406776	+	16.48766	NA	exon (NM_145301, exon 6 of 6)	exon (NM_145301, exon 6 of 6)	-35550	NM_001204477	284040	Hs.164595	NM_173622	HPRD:08208	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_95417	chr7	131962160	131962308	+	16.48766	NA	intron (NM_020911, intron 4 of 31)	intron (NM_020911, intron 4 of 31)	299089	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_71003	chr3	134316499	134316708	+	16.48766	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	53261	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_15212	chr10	101690586	101690894	+	16.48766	NA	intron (NR_024130, intron 2 of 4)	intron (NR_024130, intron 2 of 4)	3774	NR_024130	100188954	Hs.656104	NR_024130		DNMBP-AS1	NCRNA00093|bA287G8.2	DNMBP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64281	chr22	18593507	18593702	+	16.48766	NA	5' UTR (NM_001193414, exon 1 of 5)	5' UTR (NM_001193414, exon 1 of 5)	151	NM_001193414	51807	Hs.137400	NM_018943	HPRD:05763	TUBA8	TUBAL2	tubulin, alpha 8	protein-coding
19-PTNLD28-TUMOR_peak_98454	chr8	42087340	42087565	+	16.48766	NA	Intergenic	Intergenic	-22258	NM_000930	5327	Hs.491582	NM_000930	HPRD:01419	PLAT	T-PA|TPA	plasminogen activator, tissue	protein-coding
19-PTNLD28-TUMOR_peak_61802	chr20	48976735	48976961	+	16.48766	NA	Intergenic	Intergenic	-38969	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_40191	chr17	10055278	10055717	+	16.48766	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	46371	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_74089	chr4	4782684	4782876	+	16.48766	NA	Intergenic	MIRb|SINE|MIR	-63384	NR_125765	103695434	Hs.550830	NR_125765		LINC01396	-	long intergenic non-protein coding RNA 1396	ncRNA
19-PTNLD28-TUMOR_peak_72610	chr3	180587883	180588059	+	16.48766	NA	promoter-TSS (NR_109986)	promoter-TSS (NR_109986)	-5	NR_109986	101928882	Hs.734668	NR_109986		LOC101928882	-	uncharacterized LOC101928882	ncRNA
19-PTNLD28-TUMOR_peak_61923	chr20	50123631	50124012	+	16.48699	NA	intron (NM_001258296, intron 3 of 10)	MIR|SINE|MIR	35437	NM_001258297	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_996	chr1	15745430	15745654	+	16.48699	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	9151	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_43115	chr17	66259357	66259483	+	16.48699	NA	intron (NM_014960, intron 1 of 11)	intron (NM_014960, intron 1 of 11)	4097	NM_014960	22901	Hs.437249	NM_014960		ARSG	-	arylsulfatase G	protein-coding
19-PTNLD28-TUMOR_peak_63248	chr21	34774903	34775246	+	16.48699	NA	promoter-TSS (NM_005534)	promoter-TSS (NM_005534)	-128	NM_005534	3460	Hs.634632	NM_005534	HPRD:00956	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
19-PTNLD28-TUMOR_peak_59857	chr20	12989536	12989666	+	16.48475	NA	promoter-TSS (NM_018327)	promoter-TSS (NM_018327)	-26	NM_018327	55304	Hs.425023	NM_018327	HPRD:12765	SPTLC3	C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b	serine palmitoyltransferase, long chain base subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_10318	chr1	223908769	223909032	+	16.48475	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	8781	NM_001748	824	Hs.350899	NM_001748	HPRD:00254	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2, (m/II) large subunit	protein-coding
19-PTNLD28-TUMOR_peak_42665	chr17	57906337	57906498	+	16.47751	NA	intron (NM_030938, intron 10 of 11)	AluSz|SINE|Alu	-12210	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
19-PTNLD28-TUMOR_peak_611	chr1	9501578	9501896	+	16.47462	NA	Intergenic	Intergenic	-12682	NR_104622	100506022	Hs.131775	NR_104622		LOC100506022	-	uncharacterized LOC100506022	ncRNA
19-PTNLD28-TUMOR_peak_33341	chr15	43885679	43886378	+	16.46943	NA	intron (NM_020990, intron 1 of 9)	CpG	776	NM_020990	1159	Hs.741420	NM_020990	HPRD:00424	CKMT1B	CKMT|CKMT1|UMTCK	creatine kinase, mitochondrial 1B	protein-coding
19-PTNLD28-TUMOR_peak_80491	chr5	69760003	69760368	+	16.46511	NA	intron (NR_027386, intron 3 of 5)	intron (NR_027386, intron 3 of 5)	-22143	NR_073404	441081	Hs.721548	NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102255	chr9	15295817	15296375	+	16.46511	NA	intron (NM_001168339, intron 1 of 19)	intron (NM_001168339, intron 1 of 19)	11262	NM_001168341	158219	Hs.563630	NM_152574	HPRD:10801	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
19-PTNLD28-TUMOR_peak_106848	chr9	140301418	140301672	+	16.46511	NA	intron (NR_104598, intron 1 of 10)	CpG	16169	NM_001286823	54932	Hs.495553	NM_017820	HPRD:07906	EXD3	mut-7	exonuclease 3'-5' domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_107735	chrX	19908243	19908419	+	16.46511	NA	Intergenic	Intergenic	-2587	NM_031892	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_86915	chr6	34122495	34122801	+	16.46511	NA	intron (NM_001256809, intron 1 of 8)	CpG	751	NM_001256809	2914	Hs.429018	NM_000841	HPRD:04978	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate receptor, metabotropic 4	protein-coding
19-PTNLD28-TUMOR_peak_12133	chr10	14447784	14448092	+	16.46252	NA	Intergenic	Intergenic	-30637	NR_031668	100302116		NR_031668	miRBase:MI0006401	MIR1265	MIRN1265|hsa-mir-1265	microRNA 1265	ncRNA
19-PTNLD28-TUMOR_peak_40659	chr17	21251960	21252242	+	16.45763	NA	Intergenic	Intergenic	-27598	NM_021012	3768	Hs.200629	NM_021012	HPRD:09083	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding
19-PTNLD28-TUMOR_peak_78389	chr4	186793970	186794192	+	16.45548	NA	intron (NM_021069, intron 1 of 20)	intron (NM_021069, intron 1 of 20)	-60671	NM_003603	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_14900	chr10	93449635	93449982	+	16.45548	NA	Intergenic	L2b|LINE|L2	-56950	NM_005398	5507	Hs.303090	NM_005398	HPRD:04298	PPP1R3C	PPP1R5	protein phosphatase 1, regulatory subunit 3C	protein-coding
19-PTNLD28-TUMOR_peak_29185	chr13	114445073	114445286	+	16.45548	NA	Intergenic	Intergenic	8883	NR_028064	100130386	Hs.704121	NM_001137672		LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
19-PTNLD28-TUMOR_peak_2903	chr1	42651819	42652059	+	16.45548	NA	intron (NM_014947, intron 11 of 12)	intron (NM_014947, intron 11 of 12)	-21544	NM_033553	2980	Hs.778	NM_033553	HPRD:00767	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A (guanylin)	protein-coding
19-PTNLD28-TUMOR_peak_42772	chr17	60601610	60601745	+	16.45548	NA	exon (NM_001284333, exon 6 of 23)	exon (NM_001284333, exon 6 of 23)	43203	NM_001284363	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_47403	chr19	12313202	12313365	+	16.45548	NA	intron (NR_104179, intron 1 of 1)	intron (NR_104179, intron 1 of 1)	7453	NR_104179	100289333	Hs.662603	NR_104179		LOC100289333	-	uncharacterized LOC100289333	ncRNA
19-PTNLD28-TUMOR_peak_25897	chr12	104275123	104275271	+	16.45548	NA	intron (NR_027249, intron 9 of 15)	L2b|LINE|L2	-40222	NM_001031701	51559	Hs.48428	NM_016575	HPRD:18241	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_70012	chr3	118601350	118601525	+	16.45548	NA	Intergenic	Intergenic	-60486	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42830	chr17	61724807	61725004	+	16.45548	NA	intron (NM_203351, intron 4 of 16)	intron (NM_203351, intron 4 of 16)	25104	NM_203351	4215	Hs.29282	NM_002401	HPRD:03965	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_54737	chr2	108024560	108024730	+	16.45548	NA	Intergenic	Intergenic	417938	NR_024439	729121	Hs.386155	NR_024439	ENSG00000230651	RGPD4-AS1	-	RGPD4 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_4110	chr1	65502651	65502830	+	16.45548	NA	Intergenic	AluJr|SINE|Alu	20785	NR_037443	100500854		NR_037443	miRBase:MI0016072	MIR3671	-	microRNA 3671	ncRNA
19-PTNLD28-TUMOR_peak_75848	chr4	78739736	78740058	+	16.44950	NA	intron (NM_144571, intron 1 of 11)	CpG	647	NM_001286790	246175	Hs.592519	NM_144571	HPRD:10841	CNOT6L	CCR4b	CCR4-NOT transcription complex, subunit 6-like	protein-coding
19-PTNLD28-TUMOR_peak_84994	chr6	4607200	4607580	+	16.44894	NA	Intergenic	Intergenic	-3409	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_92432	chr7	47492791	47493061	+	16.44894	NA	intron (NM_022748, intron 4 of 30)	intron (NM_022748, intron 4 of 30)	128816	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_97623	chr8	22608500	22608701	+	16.44839	NA	intron (NM_144962, intron 4 of 6)	intron (NM_144962, intron 4 of 6)	-57785	NM_004430	1960	Hs.534313	NM_004430	HPRD:03881	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
19-PTNLD28-TUMOR_peak_58346	chr2	218191331	218191634	+	16.44839	NA	intron (NR_026597, intron 9 of 12)	intron (NR_026597, intron 9 of 12)	429834	NR_026597	729582	Hs.572788	NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
19-PTNLD28-TUMOR_peak_49947	chr19	50822944	50823114	+	16.44839	NA	intron (NR_110912, intron 2 of 3)	L2b|LINE|L2	9605	NM_004977	3748	Hs.467146	NM_004977	HPRD:08886	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel, Shaw-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_86117	chr6	26240384	26241032	+	16.44839	NA	promoter-TSS (NM_003540)	promoter-TSS (NM_003540)	54	NM_003540	8361	Hs.247816	NM_003540		HIST1H4F	H4|H4/c|H4FC	histone cluster 1, H4f	protein-coding
19-PTNLD28-TUMOR_peak_15057	chr10	98346221	98346441	+	16.44366	NA	intron (NM_020123, intron 1 of 14)	CpG	478	NM_020123	56889	Hs.500674	NM_020123	HPRD:18073	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
19-PTNLD28-TUMOR_peak_41483	chr17	39967936	39968281	+	16.44366	NA	promoter-TSS (NM_021939)	promoter-TSS (NM_021939)	343	NM_006455	10609	Hs.446459	NM_006455	HPRD:10126	LEPREL4	NO55|NOL55|SC65	leprecan-like 4	protein-coding
19-PTNLD28-TUMOR_peak_13170	chr10	43447279	43447679	+	16.44308	NA	Intergenic	Intergenic	-45532	NR_049836	100847014		NR_049836	miRBase:MI0019116	MIR5100	-	microRNA 5100	ncRNA
19-PTNLD28-TUMOR_peak_12908	chr10	35028882	35029270	+	16.44308	NA	intron (NM_001184791, intron 1 of 20)	intron (NM_001184791, intron 1 of 20)	75177	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_74025	chr4	3853014	3853334	+	16.44044	NA	Intergenic	Intergenic	84878	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_84350	chr5	177199572	177199858	+	16.44044	NA	intron (NM_173663, intron 1 of 19)	L1HS|LINE|L1	7790	NM_173663	285596	Hs.368516	NM_173663	HPRD:14870	FAM153A	NY-REN-7	family with sequence similarity 153, member A	protein-coding
19-PTNLD28-TUMOR_peak_341	chr1	6118674	6118921	+	16.44044	NA	intron (NM_001199862, intron 2 of 15)	intron (NM_001199862, intron 2 of 15)	12623	NM_001199863	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_26170	chr12	109218060	109218300	+	16.43476	NA	intron (NM_001161330, intron 2 of 13)	AluSz|SINE|Alu	3147	NM_001161331	54434	Hs.199763	NM_018984	HPRD:09486	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_77859	chr4	159931752	159932009	+	16.43476	NA	intron (NM_152543, intron 1 of 4)	L3|LINE|CR1	24453	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_101571	chr8	144025072	144025222	+	16.43476	NA	Intergenic	Intergenic	-25888	NM_000498	1585	Hs.632054	NM_000498	HPRD:00492	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	cytochrome P450, family 11, subfamily B, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_64774	chr22	24899645	24899771	+	16.43476	NA	intron (NM_016327, intron 3 of 9)	MER54B|LTR|ERVL	8457	NM_016327	51733	Hs.731656	NM_016327	HPRD:09451	UPB1	BUP1	ureidopropionase, beta	protein-coding
19-PTNLD28-TUMOR_peak_20529	chr11	89828341	89828519	+	16.43476	NA	Intergenic	L1PA2|LINE|L1	9312	NM_001143975	642623	Hs.719885	NM_001143975		UBTFL1	C11orf27|HMGPI	upstream binding transcription factor, RNA polymerase I-like 1	protein-coding
19-PTNLD28-TUMOR_peak_53022	chr2	63062661	63062834	+	16.43476	NA	intron (NM_001142614, intron 6 of 22)	L1PA2|LINE|L1	128715	NM_001142614	23301	Hs.271667	NM_015252	HPRD:10109	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108138	chrX	46569861	46570159	+	16.43476	NA	intron (NM_001257291, intron 1 of 16)	intron (NM_001257291, intron 1 of 16)	48597	NM_032591	84679	Hs.91389	NM_032591		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
19-PTNLD28-TUMOR_peak_109384	chrX	125368864	125369005	+	16.43476	NA	Intergenic	L1PA3|LINE|L1	-68854	NM_001013628	340578	Hs.181867	NM_001013628		DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12-like 2	protein-coding
19-PTNLD28-TUMOR_peak_59778	chr20	10395723	10395971	+	16.43476	NA	intron (NM_170784, intron 2 of 5)	intron (NM_170784, intron 2 of 5)	16726	NM_018848	8195	Hs.472119	NM_018848	HPRD:05356	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
19-PTNLD28-TUMOR_peak_81568	chr5	112249113	112249333	+	16.43476	NA	intron (NM_005669, intron 2 of 4)	AluJb|SINE|Alu	8808	NM_005669	7905	Hs.429608	NM_005669	HPRD:15918	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
19-PTNLD28-TUMOR_peak_110111	chrY	2457302	2457539	+	16.43476	NA	Intergenic	Intergenic	-19812	NR_106737	102464837		NR_106737		MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
19-PTNLD28-TUMOR_peak_73543	chr3	195800236	195800351	+	16.43476	NA	intron (NM_001128148, intron 4 of 18)	AluJb|SINE|Alu	8668	NM_003234	7037	Hs.529618	NM_003234	HPRD:01812	TFRC	CD71|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
19-PTNLD28-TUMOR_peak_57704	chr2	200350667	200350920	+	16.43476	NA	Intergenic	Intergenic	-14804	NM_015265	23314	Hs.516617	NM_015265	HPRD:12178	SATB2	GLSS	SATB homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_107375	chrX	2507302	2507539	+	16.43476	NA	Intergenic	Intergenic	-19812	NR_106737	102464837		NR_106737		MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
19-PTNLD28-TUMOR_peak_109381	chrX	125243552	125243685	+	16.43476	NA	promoter-TSS (NR_110409)	promoter-TSS (NR_110409)	-127	NR_110409	101928495	Hs.545998	NR_110409	ENSG00000237208	LOC101928495	-	uncharacterized LOC101928495	ncRNA
19-PTNLD28-TUMOR_peak_10610	chr1	228297888	228298058	+	16.42887	NA	promoter-TSS (NM_181456)	promoter-TSS (NM_181456)	-960	NM_181454	128308	Hs.63236	NM_181441	HPRD:14773	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675	mitochondrial ribosomal protein L55	protein-coding
19-PTNLD28-TUMOR_peak_7221	chr1	155621093	155621514	+	16.42887	NA	Intergenic	HERV4_I-int|LTR|ERV1	28317	NM_001198899	55249	Hs.584927	NM_018253	HPRD:08485	YY1AP1	HCCA1|HCCA2|YAP|YY1AP	YY1 associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_1386	chr1	22544463	22544595	+	16.42844	NA	Intergenic	Intergenic	-75010	NM_030761	54361	Hs.25766	NM_030761	HPRD:04601	WNT4	SERKAL|WNT-4	wingless-type MMTV integration site family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_2291	chr1	35073502	35073659	+	16.42844	NA	Intergenic	Intergenic	-147068	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_42651	chr17	57583084	57583258	+	16.42844	NA	intron (NR_110813, intron 1 of 2)	ERV3-16A3_I-int|LTR|ERVL	21047	NR_110813	101927728	Hs.569720	NR_110813	ENSG00000265313	LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
19-PTNLD28-TUMOR_peak_76179	chr4	88157008	88157250	+	16.42844	NA	Intergenic	Intergenic	-15369	NM_001292007	57563	Hs.106601	NM_020803	HPRD:13928	KLHL8	-	kelch-like family member 8	protein-coding
19-PTNLD28-TUMOR_peak_39024	chr16	82315268	82315475	+	16.42844	NA	Intergenic	L2b|LINE|L2	-111542	NM_005792	10200	Hs.344400	NM_005792	HPRD:16111	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
19-PTNLD28-TUMOR_peak_2326	chr1	35351263	35351431	+	16.42844	NA	exon (NM_001080418, exon 5 of 10)	exon (NM_001080418, exon 5 of 10)	19637	NM_001080418	58512	Hs.733945	NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3	discs, large (Drosophila) homolog-associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_41044	chr17	32625274	32625384	+	16.42844	NA	Intergenic	L1PA2|LINE|L1	12642	NM_002986	6356	Hs.54460	NM_002986	HPRD:03098	CCL11	SCYA11	chemokine (C-C motif) ligand 11	protein-coding
19-PTNLD28-TUMOR_peak_95432	chr7	132159181	132159299	+	16.42844	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	102083	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_93221	chr7	73280590	73280751	+	16.42844	NA	TTS (NM_182504)	TTS (NM_182504)	5181	NM_182504	135886	Hs.647026	NM_182504	HPRD:15662	WBSCR28	-	Williams-Beuren syndrome chromosome region 28	protein-coding
19-PTNLD28-TUMOR_peak_50357	chr19	55803379	55803586	+	16.42844	NA	intron (NM_032430, intron 4 of 18)	intron (NM_032430, intron 4 of 18)	7948	NM_032430	84446	Hs.182081	NM_032430	HPRD:12533	BRSK1	hSAD1	BR serine/threonine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_103404	chr9	65805640	65805781	+	16.42844	NA	Intergenic	Intergenic	-296100	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_11781	chr10	5027136	5027512	+	16.42844	NA	Intergenic	L1PBa|LINE|L1	18882	NM_001135241	1646	Hs.460260	NM_001354	HPRD:11857	AKR1C2	AKR1C-pseudo|BABP|DD|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8|TDD	aldo-keto reductase family 1, member C2	protein-coding
19-PTNLD28-TUMOR_peak_58512	chr2	220374520	220374645	+	16.42844	NA	Intergenic	Intergenic	-4310	NM_182847	55515	Hs.87469	NM_018674	HPRD:16231	ASIC4	ACCN4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding
19-PTNLD28-TUMOR_peak_50931	chr2	8764194	8764405	+	16.42844	NA	Intergenic	Intergenic	-40377	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LOC101929567	-	uncharacterized LOC101929567	ncRNA
19-PTNLD28-TUMOR_peak_26129	chr12	108736823	108737080	+	16.42636	NA	Intergenic	Intergenic	-3857	NM_001142343	1240	Hs.197143	NM_004072	HPRD:03829	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemokine-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_77217	chr4	140661723	140662161	+	16.42636	NA	TTS (NM_001204367)	TTS (NM_001204367)	75020	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_26216	chr12	110108525	110108743	+	16.42636	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-43553	NM_032829	84915	Hs.661785	NM_032829	HPRD:07868	FAM222A	C12orf34	family with sequence similarity 222, member A	protein-coding
19-PTNLD28-TUMOR_peak_94428	chr7	101097005	101097292	+	16.42636	NA	intron (NM_133457, intron 3 of 12)	intron (NM_133457, intron 3 of 12)	91047	NM_001278563	136227	Hs.654854	NM_133457	HPRD:16405	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen, type XXVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_100486	chr8	123807356	123807543	+	16.42636	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	13548	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_33670	chr15	56538295	56538528	+	16.42636	NA	Intergenic	Intergenic	-2928	NM_022841	64864	Hs.745089	NM_022841	HPRD:07807	RFX7	RFXDC2	regulatory factor X, 7	protein-coding
19-PTNLD28-TUMOR_peak_38621	chr16	71660859	71661038	+	16.42636	NA	intron (NM_001017967, intron 1 of 2)	intron (NM_001017967, intron 1 of 2)	892	NM_001017967	91862	Hs.513706	NM_052858	HPRD:14365	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_102462	chr9	21803171	21803339	+	16.41969	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	620	NM_002451	4507	Hs.193268	NM_002451	HPRD:01134	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
19-PTNLD28-TUMOR_peak_21325	chr11	115033758	115033917	+	16.41424	NA	Intergenic	Intergenic	341404	NM_014333	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_106372	chr9	132359918	132360475	+	16.41424	NA	Intergenic	Intergenic	-10967	NM_001286796	28989	Hs.744027	NM_014064	HPRD:10628	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_36368	chr16	12712485	12712760	+	16.41424	NA	Intergenic	MER50|LTR|ERV1	-101556	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_14332	chr10	75489625	75489876	+	16.41424	NA	intron (NR_026592, intron 1 of 11)	intron (NR_026592, intron 1 of 11)	522	NR_026592	729096	Hs.709171	NR_026592		BMS1P4	BMS1LP4	BMS1 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_95671	chr7	137643447	137643626	+	16.41424	NA	TTS (NM_001243523)	TTS (NM_001243523)	5442	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
19-PTNLD28-TUMOR_peak_61692	chr20	48184493	48184654	+	16.41424	NA	intron (NM_000961, intron 1 of 9)	CpG	134	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_45695	chr18	47447181	47447517	+	16.41060	NA	intron (NM_001080467, intron 17 of 39)	intron (NM_001080467, intron 17 of 39)	106956	NR_117096	103091864	Hs.646459	NR_117096		SNHG22	SCARNA17HG	small nucleolar RNA host gene 22 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_66896	chr3	15361012	15361428	+	16.40321	NA	intron (NM_001018009, intron 2 of 8)	MLT1H1|LTR|ERVL-MaLR	12916	NM_004844	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_81998	chr5	127612616	127612799	+	16.40215	NA	intron (NM_001999, intron 58 of 64)	Tigger13a|DNA|TcMar-Tigger	193224	NR_046207	6558	Hs.162585	NM_001046	HPRD:06775	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_91289	chr7	12105745	12105923	+	16.40215	NA	Intergenic	LTR10A|LTR|ERV1	-145014	NM_001134232	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_42264	chr17	48703607	48703774	+	16.40215	NA	exon (NM_198380, exon 36 of 36)	exon (NM_198380, exon 36 of 36)	-8528	NM_001144070	8714	Hs.463421	NM_003786	HPRD:06826	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding
19-PTNLD28-TUMOR_peak_82824	chr5	141977692	141977943	+	16.40215	NA	intron (NM_033136, intron 2 of 2)	intron (NM_033136, intron 2 of 2)	15909	NM_033137	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_48105	chr19	18906504	18906733	+	16.40215	NA	Intergenic	Intergenic	-4504	NM_000095	1311	Hs.1584	NM_000095	HPRD:02632	COMP	EDM1|EPD1|MED|PSACH|THBS5	cartilage oligomeric matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_16618	chr11	1884824	1885033	+	16.40215	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	-1467	NM_001242932	4046	Hs.56729	NM_002339	HPRD:01083	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43506	chr17	73978213	73978375	+	16.39299	NA	intron (NM_001113324, intron 1 of 3)	MER39B|LTR|ERV1	-2779	NM_001185039	51	Hs.464137	NM_004035	HPRD:02030	ACOX1	ACOX|PALMCOX|SCOX	acyl-CoA oxidase 1, palmitoyl	protein-coding
19-PTNLD28-TUMOR_peak_4598	chr1	85513919	85514519	+	16.38478	NA	promoter-TSS (NM_018298)	promoter-TSS (NM_018298)	4	NM_001253693	55283	Hs.535239	NM_018298	HPRD:09585	MCOLN3	TRP-ML3|TRPML3	mucolipin 3	protein-coding
19-PTNLD28-TUMOR_peak_12626	chr10	28957662	28957861	+	16.38478	NA	Intergenic	CpG	-8663	NM_012342	25805	Hs.533336	NM_012342	HPRD:05117	BAMBI	NMA	BMP and activin membrane-bound inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_43052	chr17	65370851	65370991	+	16.38402	NA	Intergenic	Intergenic	-2476	NM_181671	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_72276	chr3	170385709	170385847	+	16.37999	NA	Intergenic	L1PA4|LINE|L1	-81915	NM_020949	57709	Hs.596660	NM_020949	HPRD:17222	SLC7A14	PPP1R142	solute carrier family 7, member 14	protein-coding
19-PTNLD28-TUMOR_peak_17222	chr11	12280183	12280362	+	16.37999	NA	intron (NM_001282665, intron 20 of 21)	intron (NM_001282665, intron 20 of 21)	-28175	NM_032867	84953	Hs.128196	NM_032867	HPRD:08610	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_48449	chr19	30941028	30941362	+	16.37999	NA	intron (NM_014717, intron 2 of 4)	intron (NM_014717, intron 2 of 4)	77867	NM_014717	9745	Hs.378901	NM_014717	HPRD:15825	ZNF536	-	zinc finger protein 536	protein-coding
19-PTNLD28-TUMOR_peak_40208	chr17	10672219	10672539	+	16.37999	NA	intron (NR_073458, intron 1 of 3)	MLT1G1|LTR|ERVL-MaLR	35037	NR_036581	100289255	Hs.306721	NR_036581	ENSG00000263429	LINC00675	-	long intergenic non-protein coding RNA 675	ncRNA
19-PTNLD28-TUMOR_peak_4766	chr1	89828878	89829014	+	16.37999	NA	promoter-TSS (NM_198460)	promoter-TSS (NM_198460)	-490	NM_198460	163351	Hs.254338	NM_198460		GBP6	-	guanylate binding protein family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_107954	chrX	38728186	38728602	+	16.37999	NA	Intergenic	Intergenic	-65258	NR_046706	100874211	Hs.662789	NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61417	chr20	44921842	44922040	+	16.37999	NA	intron (NM_021248, intron 1 of 11)	intron (NM_021248, intron 1 of 11)	15196	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_107901	chrX	32889753	32890165	+	16.37999	NA	intron (NM_004009, intron 2 of 78)	MamGypLTR2c|LTR|Gypsy	256585	NM_004010	1756	Hs.495912	NM_000109	HPRD:02303	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
19-PTNLD28-TUMOR_peak_30827	chr14	65486799	65486944	+	16.37999	NA	intron (NM_001202558, intron 5 of 12)	intron (NM_001202558, intron 5 of 12)	-24535	NR_039855	100616490		NR_039855		MIR4706	-	microRNA 4706	ncRNA
19-PTNLD28-TUMOR_peak_101567	chr8	143905769	143905911	+	16.37999	NA	Intergenic	Intergenic	-10377	NM_002066	2765	Hs.661218	NM_002066	HPRD:03844	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
19-PTNLD28-TUMOR_peak_49659	chr19	48455431	48455573	+	16.37829	NA	Intergenic	Intergenic	1949	NR_024221	100170226	Hs.467061	NR_024221		SNAR-C3	-	small ILF3/NF90-associated RNA C3	snRNA
19-PTNLD28-TUMOR_peak_39998	chr17	7487346	7487476	+	16.37420	NA	intron (NM_004870, intron 1 of 6)	CpG	446	NM_004870	9526	Hs.246381	NM_004870	HPRD:04951	MPDU1	CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15	mannose-P-dolichol utilization defect 1	protein-coding
19-PTNLD28-TUMOR_peak_38966	chr16	81437197	81437401	+	16.37314	NA	Intergenic	CpG	18676	NR_039871	100616150		NR_039871	miRBase:MI0017355	MIR4720	-	microRNA 4720	ncRNA
19-PTNLD28-TUMOR_peak_53853	chr2	86132332	86132823	+	16.37265	NA	Intergenic	Intergenic	16174	NR_110569	101928113	Hs.625888	NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_42898	chr17	62658833	62659016	+	16.37265	NA	promoter-TSS (NM_022739)	promoter-TSS (NM_022739)	-538	NM_022739	64750	Hs.515011	NM_022739		SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_95979	chr7	142478960	142479441	+	16.37255	NA	promoter-TSS (NM_002770)	promoter-TSS (NM_002770)	443	NR_001296	154754	Hs.449281	NR_001296	ENSG00000250606	PRSS3P2	T6|TRY6	protease, serine, 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_28785	chr13	99039014	99039284	+	16.36517	NA	intron (NM_005766, intron 8 of 26)	intron (NM_005766, intron 8 of 26)	135230	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_109582	chrX	135251405	135251898	+	16.36517	NA	promoter-TSS (NM_001167819)	promoter-TSS (NM_001167819)	-145	NM_001167819	2273	Hs.435369	NM_001449	HPRD:02157	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
19-PTNLD28-TUMOR_peak_90345	chr6	160015830	160015999	+	16.36517	NA	Intergenic	Intergenic	98439	NM_001024466	6648	Hs.487046	NM_000636	HPRD:00938	SOD2	IPOB|MNSOD|MVCD6	superoxide dismutase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_104478	chr9	92208700	92208984	+	16.36517	NA	Intergenic	Intergenic	-11085	NM_006705	10912	Hs.9701	NM_006705	HPRD:05383	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA-damage-inducible, gamma	protein-coding
19-PTNLD28-TUMOR_peak_88787	chr6	91595018	91595716	+	16.36517	NA	Intergenic	L1PB1|LINE|L1	-298347	NM_003188	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_38985	chr16	81643790	81643973	+	16.36336	NA	intron (NM_198390, intron 2 of 20)	intron (NM_198390, intron 2 of 20)	-1072	NR_106759	102465251		NR_106759		MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
19-PTNLD28-TUMOR_peak_60589	chr20	32281586	32281755	+	16.36336	NA	Intergenic	Intergenic	-7460	NM_005225	1869	Hs.654393	NM_005225	HPRD:01806	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_97013	chr8	8055803	8055935	+	16.36336	NA	Intergenic	HERVK-int|LTR|ERVK	-30223	NR_024361	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65444	chr22	38082258	38082618	+	16.36336	NA	promoter-TSS (NM_024313)	promoter-TSS (NM_024313)	94	NM_024313	79159	Hs.632778	NM_024313	HPRD:17537	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
19-PTNLD28-TUMOR_peak_87067	chr6	36097791	36098289	+	16.36292	NA	promoter-TSS (NR_072996)	promoter-TSS (NR_072996)	-221	NR_072996	5603	Hs.178695	NM_002754	HPRD:09113	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_77443	chr4	146540778	146541085	+	16.36292	NA	intron (NM_172250, intron 1 of 6)	intron (NM_172250, intron 1 of 6)	391	NM_172250	166785	Hs.452864	NM_172250	HPRD:07394	MMAA	cblA	methylmalonic aciduria (cobalamin deficiency) cblA type	protein-coding
19-PTNLD28-TUMOR_peak_22864	chr12	7341206	7341386	+	16.36292	NA	promoter-TSS (NM_001131025)	promoter-TSS (NM_001131025)	-463	NM_001131026	5830	Hs.567327	NM_000319	HPRD:02684	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1	peroxisomal biogenesis factor 5	protein-coding
19-PTNLD28-TUMOR_peak_55224	chr2	118943234	118943696	+	16.36292	NA	Intergenic	Intergenic	97415	NM_016133	51141	Hs.7089	NM_016133	HPRD:16361	INSIG2	-	insulin induced gene 2	protein-coding
19-PTNLD28-TUMOR_peak_63325	chr21	36072830	36073222	+	16.36292	NA	intron (NM_053277, intron 1 of 5)	intron (NM_053277, intron 1 of 5)	31338	NM_053277	54102	Hs.473695	NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
19-PTNLD28-TUMOR_peak_1721	chr1	27226492	27226739	+	16.36117	NA	exon (NM_022078, exon 1 of 7)	exon (NM_022078, exon 1 of 7)	347	NM_022078	63906	Hs.10903	NM_022078	HPRD:07772	GPATCH3	GPATC3	G patch domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_4765	chr1	89823956	89824107	+	16.36117	NA	Intergenic	Intergenic	-5405	NM_198460	163351	Hs.254338	NM_198460		GBP6	-	guanylate binding protein family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_79507	chr5	36495034	36495416	+	16.36117	NA	Intergenic	Intergenic	-111232	NM_001166696	6507	Hs.481918	NM_004172	HPRD:02523	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_34272	chr15	70458193	70458585	+	16.36117	NA	Intergenic	MER124|DNA?|DNA?	-68133	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_65455	chr22	38213754	38213949	+	16.36117	NA	TTS (NM_001171690)	TTS (NM_001171690)	-5538	NM_003614	8484	Hs.158353	NM_003614	HPRD:04736	GALR3	-	galanin receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_15083	chr10	99027550	99027718	+	16.36117	NA	intron (NM_001204300, intron 1 of 10)	THE1B-int|LTR|ERVL-MaLR	2813	NM_001256423	84986	Hs.80305	NM_032900	HPRD:12475	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
19-PTNLD28-TUMOR_peak_89065	chr6	110116265	110116442	+	16.36117	NA	intron (NM_014845, intron 21 of 22)	AluYb8|SINE|Alu	103929	NM_014845	9896	Hs.529959	NM_014845	HPRD:11073	FIG4	ALS11|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_102755	chr9	34079303	34079453	+	16.36117	NA	Intergenic	Intergenic	-30431	NM_018449	55833	Hs.493739	NM_018449	HPRD:06748	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_88310	chr6	73890817	73890994	+	16.36117	NA	intron (NM_001160133, intron 12 of 14)	intron (NM_001160133, intron 12 of 14)	-37668	NR_046621	100873997	Hs.741819	NR_046621	ENSG00000229154	KCNQ5-AS1	-	KCNQ5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99957	chr8	105655312	105655514	+	16.36117	NA	Intergenic	Intergenic	-54161	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_47213	chr19	10501414	10501619	+	16.35643	NA	TTS (NM_007065)	TTS (NM_007065)	-10268	NM_003331	7297	Hs.75516	NM_003331	HPRD:01490	TYK2	JTK1	tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_6597	chr1	149433555	149433764	+	16.35643	NA	Intergenic	MIR|SINE|MIR	64365	NR_027484	100132417	Hs.77424	NM_001128589		FCGR1C	CD64c|FCRIC|IGFR1|IGFRC	Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46401	chr18	77313155	77313401	+	16.35643	NA	Intergenic	Intergenic	-126523	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_11926	chr10	7603184	7603494	+	16.35559	NA	3' UTR (NM_030569, exon 15 of 15)	3' UTR (NM_030569, exon 15 of 15)	58297	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_95814	chr7	139942275	139942518	+	16.35559	NA	Intergenic	Intergenic	65335	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_3279	chr1	47573606	47574015	+	16.35559	NA	intron (NM_178134, intron 9 of 11)	intron (NM_178134, intron 9 of 11)	-29297	NM_001010969	284541	Hs.726474	NM_001010969		CYP4A22	-	cytochrome P450, family 4, subfamily A, polypeptide 22	protein-coding
19-PTNLD28-TUMOR_peak_11764	chr10	4719860	4720129	+	16.34987	NA	intron (NR_024475, intron 1 of 3)	intron (NR_024475, intron 1 of 3)	268	NR_024475	100216001	Hs.634869	NR_024475	ENSG00000231298	LINC00704	-	long intergenic non-protein coding RNA 704	ncRNA
19-PTNLD28-TUMOR_peak_67479	chr3	35435493	35435693	+	16.34987	NA	promoter-TSS (NR_110817)	promoter-TSS (NR_110817)	-78	NR_110817	101928135	Hs.550715	NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
19-PTNLD28-TUMOR_peak_4287	chr1	68908903	68909116	+	16.34987	NA	intron (NM_000329, intron 5 of 13)	MER20B|DNA|hAT-Charlie	6633	NM_000329	6121	Hs.2133	NM_000329	HPRD:01569	RPE65	BCO3|LCA2|RP20|mRPE65|rd12|sRPE65	retinal pigment epithelium-specific protein 65kDa	protein-coding
19-PTNLD28-TUMOR_peak_40969	chr17	30533091	30533393	+	16.34987	NA	intron (NM_001288758, intron 17 of 20)	AluSq|SINE|Alu	-54652	NR_002222	503640	Hs.631752	NR_002222		ARGFXP2	-	arginine-fifty homeobox pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_13261	chr10	44780087	44780391	+	16.34987	NA	Intergenic	Intergenic	-7959	NM_001258000	100130539	Hs.694626	NM_001258000		LOC100130539	-	uncharacterized LOC100130539	protein-coding
19-PTNLD28-TUMOR_peak_105560	chr9	116844898	116845015	+	16.34987	NA	Intergenic	Intergenic	-4204	NM_001633	259	Hs.436911	NM_001633	HPRD:01467	AMBP	A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI	alpha-1-microglobulin/bikunin precursor	protein-coding
19-PTNLD28-TUMOR_peak_30841	chr14	65749450	65749632	+	16.34987	NA	Intergenic	Intergenic	52360	NR_039857	100616176		NR_039857	miRBase:MI0017341	MIR4708	-	microRNA 4708	ncRNA
19-PTNLD28-TUMOR_peak_90470	chr6	166471579	166471860	+	16.34987	NA	Intergenic	Intergenic	-70192	NR_026860	90632	Hs.31917	NR_026860	ENSG00000223414	LINC00473	C6orf176|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA
19-PTNLD28-TUMOR_peak_9801	chr1	207142506	207142729	+	16.34987	NA	intron (NM_032029, intron 1 of 6)	intron (NM_032029, intron 1 of 6)	1353	NM_032029	83953	Hs.145519	NM_032029	HPRD:12020	FCAMR	CD351|FCA/MR	Fc receptor, IgA, IgM, high affinity	protein-coding
19-PTNLD28-TUMOR_peak_77234	chr4	140840761	140840888	+	16.34987	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	234409	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_48303	chr19	24166306	24166518	+	16.34987	NA	Intergenic	BSR/Beta|Satellite|Satellite	-49795	NM_001278661	9534	Hs.434406	NM_004876	HPRD:05304	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
19-PTNLD28-TUMOR_peak_86025	chr6	25070919	25071238	+	16.34987	NA	Intergenic	Intergenic	-28682	NM_001286446	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_66486	chr3	9904387	9904623	+	16.34895	NA	Intergenic	CpG	15991	NM_001199623	63924	Hs.567562	NM_022094	HPRD:13060	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death-inducing DFFA-like effector c	protein-coding
19-PTNLD28-TUMOR_peak_96788	chr7	158804118	158804245	+	16.34895	NA	intron (NR_024394, intron 1 of 4)	intron (NR_024394, intron 1 of 4)	3136	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
19-PTNLD28-TUMOR_peak_41821	chr17	43508257	43508417	+	16.34801	NA	promoter-TSS (NM_001282290)	promoter-TSS (NM_001282290)	-674	NM_001282290	201176	Hs.205326	NM_174919	HPRD:12477	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
19-PTNLD28-TUMOR_peak_20668	chr11	94880756	94880899	+	16.34773	NA	Intergenic	Intergenic	-2876	NR_110303	101929295	Hs.735838	NR_110303	ENSG00000245552	LOC101929295	-	uncharacterized LOC101929295	ncRNA
19-PTNLD28-TUMOR_peak_90702	chr7	20866	21006	+	16.34773	NA	Intergenic	Intergenic	-128782	NR_108065	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
19-PTNLD28-TUMOR_peak_68112	chr3	49378024	49378298	+	16.33515	NA	promoter-TSS (NM_199443)	promoter-TSS (NM_199443)	-625	NM_003363	7375	Hs.77500	NM_003363	HPRD:04598	USP4	UNP|Unph	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding
19-PTNLD28-TUMOR_peak_61812	chr20	49032653	49032906	+	16.33515	NA	Intergenic	MIR|SINE|MIR	-94079	NM_002827	5770	Hs.417549	NM_002827	HPRD:01477	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
19-PTNLD28-TUMOR_peak_77837	chr4	159584865	159585179	+	16.32972	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	8180	NM_001008393	201725	Hs.380920	NM_001008393	HPRD:17319	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_17477	chr11	17752679	17752882	+	16.32972	NA	Intergenic	Intergenic	-4715	NM_001112741	3746	Hs.552896	NM_004976	HPRD:15936	KCNC1	KV3.1|KV4|NGK2	potassium voltage-gated channel, Shaw-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_73034	chr3	187580287	187580856	+	16.32972	NA	Intergenic	L1PA2|LINE|L1	-117058	NM_001706	604	Hs.478588	NM_001706	HPRD:00180	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding
19-PTNLD28-TUMOR_peak_83202	chr5	149883059	149883280	+	16.32881	NA	intron (NM_001301063, intron 1 of 13)	intron (NM_001301063, intron 1 of 13)	-4505	NM_001543	3340	Hs.222055	NM_001543	HPRD:02912	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
19-PTNLD28-TUMOR_peak_39105	chr16	84681250	84681394	+	16.32488	NA	promoter-TSS (NM_024731)	promoter-TSS (NM_024731)	-809	NM_024731	79786	Hs.222731	NM_024731	HPRD:12675	KLHL36	C16orf44	kelch-like family member 36	protein-coding
19-PTNLD28-TUMOR_peak_74350	chr4	8474479	8474627	+	16.32304	NA	intron (NM_152544, intron 10 of 10)	intron (NM_152544, intron 10 of 10)	32021	NM_152544	152992	Hs.566191	NM_024950	HPRD:08760	TRMT44	C4orf23|METTL19|TRM44	tRNA methyltransferase 44 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_38344	chr16	67465151	67465554	+	16.32263	NA	exon (NM_000196, exon 1 of 5)	exon (NM_000196, exon 1 of 5)	316	NM_000196	3291	Hs.1376	NM_000196	HPRD:01958	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid (11-beta) dehydrogenase 2	protein-coding
19-PTNLD28-TUMOR_peak_109741	chrX	149590199	149590361	+	16.31301	NA	intron (NM_001177465, intron 1 of 4)	intron (NM_001177465, intron 1 of 4)	-23440	NM_001177466	10046	Hs.20136	NM_005491	HPRD:02126	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49336	chr19	45279729	45279899	+	16.31301	NA	Intergenic	Intergenic	-1312	NM_001130852	23624	Hs.466907	NM_012116	HPRD:09765	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_103473	chr9	67269546	67269731	+	16.31301	NA	TTS (NR_002817)	TTS (NR_002817)	19854	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_11827	chr10	5674190	5674688	+	16.31301	NA	Intergenic	Intergenic	34119	NR_037164	79754	Hs.445899	NM_024701	HPRD:10667	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
19-PTNLD28-TUMOR_peak_88315	chr6	74019476	74020188	+	16.31301	NA	5' UTR (NM_001251874, exon 1 of 5)	5' UTR (NM_001251874, exon 1 of 5)	106	NM_001251874	80759	Hs.433062	NM_030568	HPRD:10790	KHDC1	C6orf148|NDG1|bA257K9.4	KH homology domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_6461	chr1	147294093	147294663	+	16.31291	NA	Intergenic	Intergenic	-48912	NM_005266	2702	Hs.447968	NM_005266	HPRD:08699	GJA5	ATFB11|CX40	gap junction protein, alpha 5, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_39938	chr17	6925412	6925656	+	16.31291	NA	promoter-TSS (NM_181844)	promoter-TSS (NM_181844)	-835	NM_181844	255877	Hs.22575	NM_181844	HPRD:16414	BCL6B	BAZF|ZBTB28|ZNF62	B-cell CLL/lymphoma 6, member B	protein-coding
19-PTNLD28-TUMOR_peak_49909	chr19	50595840	50596035	+	16.30903	NA	promoter-TSS (NR_024214).2	promoter-TSS (NR_024214).2	-71	NR_024226	100169955	Hs.723094	NR_024226		SNAR-A9	-	small ILF3/NF90-associated RNA A9	snRNA
19-PTNLD28-TUMOR_peak_32482	chr15	21071841	21072202	+	16.30884	NA	promoter-TSS (NM_001277304)	promoter-TSS (NM_001277304)	-40	NR_110752	102724631	Hs.722659	NM_207355		LOC102724631	POTE-15|POTEB	POTE ankyrin domain family, member B-like	protein-coding
19-PTNLD28-TUMOR_peak_7324	chr1	156547824	156548134	+	16.30884	NA	Intergenic	Intergenic	-1540	NM_001105669	164118	Hs.447851	NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
19-PTNLD28-TUMOR_peak_93317	chr7	74020940	74021149	+	16.30884	NA	Intergenic	CpG	-50947	NM_032999	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_54958	chr2	112247177	112247317	+	16.30884	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	5445	NR_015395	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42639	chr17	57445124	57445266	+	16.30735	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	1751	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	ncRNA
19-PTNLD28-TUMOR_peak_92950	chr7	66206337	66206538	+	16.30735	NA	intron (NM_001287060, intron 3 of 9)	CpG	794	NM_001287062	27342	Hs.530053	NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_86590	chr6	31184064	31184353	+	16.30515	NA	Intergenic	LTR10B1|LTR|ERV1	18671	NR_026791	253018	Hs.659818	NR_026791	HPRD:13637	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82910	chr5	143273328	143273530	+	16.30515	NA	Intergenic	Intergenic	81703	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_18477	chr11	47545066	47545358	+	16.30515	NA	5' UTR (NM_001172639, exon 1 of 16)	5' UTR (NM_001172639, exon 1 of 16)	328	NM_001172639	10658	Hs.595333	NM_006560	HPRD:03046	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP, Elav-like family member 1	protein-coding
19-PTNLD28-TUMOR_peak_83455	chr5	156558907	156559271	+	16.30515	NA	Intergenic	MER21C|LTR|ERVL	10697	NM_001100816	9443	Hs.279902	NM_004270	HPRD:05439	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_9566	chr1	204761028	204761148	+	16.30515	NA	Intergenic	Intergenic	-36694	NM_015090	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_36725	chr16	21289580	21289723	+	16.30515	NA	5' UTR (NM_001888, exon 3 of 10)	5' UTR (NM_001888, exon 3 of 10)	-22519	NR_026675	400508	Hs.578949	NM_001101368		CRYM-AS1	NCRNA00169	CRYM antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14441	chr10	78343734	78343922	+	16.30515	NA	Intergenic	Intergenic	-303974	NR_120655	101929328	Hs.664552	NR_120655		KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97533	chr8	21894273	21894587	+	16.30503	NA	TTS (NM_182795)	TTS (NM_182795)	-5998	NM_003867	8822	Hs.248192	NM_003867		FGF17	FGF-13|HH20	fibroblast growth factor 17	protein-coding
19-PTNLD28-TUMOR_peak_88531	chr6	83268516	83268716	+	16.30503	NA	Intergenic	L1PA2|LINE|L1	194655	NM_001166392	7162	Hs.82128	NM_006670	HPRD:01837	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_84849	chr6	3036968	3037450	+	16.30503	NA	Intergenic	MER83A-int|LTR|ERV1	-12204	NR_033884	401233	Hs.441039	NM_001013680		HTATSF1P2	-	HIV-1 Tat specific factor 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_63224	chr21	34569323	34569483	+	16.30503	NA	Intergenic	MamSINE1|SINE|tRNA	-26862	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	C21orf54	-	chromosome 21 open reading frame 54	ncRNA
19-PTNLD28-TUMOR_peak_25411	chr12	79257538	79257835	+	16.30503	NA	promoter-TSS (NM_001291901)	promoter-TSS (NM_001291901)	-87	NM_001135805	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
19-PTNLD28-TUMOR_peak_68160	chr3	49840089	49840415	+	16.29761	NA	promoter-TSS (NM_203370)	promoter-TSS (NM_203370)	-435	NM_203370	389119	Hs.86674	NM_203370	HPRD:14210	FAM212A	C3orf54|INKA1	family with sequence similarity 212, member A	protein-coding
19-PTNLD28-TUMOR_peak_58837	chr2	232531647	232531864	+	16.29586	NA	Intergenic	Intergenic	-41480	NM_002823	5757	Hs.459927	NM_002823	HPRD:01778	PTMA	TMSA	prothymosin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_46795	chr19	4455007	4455357	+	16.29565	NA	intron (NM_025241, intron 1 of 10)	intron (NM_025241, intron 1 of 10)	113	NM_001171091	80700	Hs.435255	NM_025241	HPRD:18253	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
19-PTNLD28-TUMOR_peak_58447	chr2	219744762	219744945	+	16.29565	NA	promoter-TSS (NM_025216)	promoter-TSS (NM_025216)	-402	NM_025216	80326	Hs.121540	NM_025216	HPRD:16207	WNT10A	OODD|SSPS|STHAG4	wingless-type MMTV integration site family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_70520	chr3	126783816	126783998	+	16.29426	NA	Intergenic	Intergenic	76470	NM_032242	5361	Hs.432329	NM_032242	HPRD:11868	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
19-PTNLD28-TUMOR_peak_61968	chr20	50930041	50930205	+	16.29426	NA	Intergenic	Intergenic	-121599	NM_199427	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_83916	chr5	171182351	171182545	+	16.29426	NA	Intergenic	Intergenic	-30428	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
19-PTNLD28-TUMOR_peak_21460	chr11	117704150	117704496	+	16.29426	NA	intron (NM_001243598, intron 6 of 9)	intron (NM_001243598, intron 6 of 9)	-5516	NM_021603	486	Hs.731865	NM_001680	HPRD:03487	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_100107	chr8	111072725	111072883	+	16.29426	NA	Intergenic	LTR1|LTR|ERV1	-85845	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_104901	chr9	100772761	100773031	+	16.29426	NA	intron (NM_006401, intron 4 of 6)	L2b|LINE|L2	27407	NM_006401	10541	Hs.730654	NM_006401	HPRD:09803	ANP32B	APRIL|PHAPI2|SSP29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_109443	chrX	129307337	129307597	+	16.29426	NA	intron (NM_004794, intron 1 of 1)	intron (NM_004794, intron 1 of 1)	1694	NM_004794	9363	Hs.654356	NM_004794	HPRD:02272	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_56021	chr2	139025573	139025776	+	16.29426	NA	Intergenic	Intergenic	-233676	NM_001001664	339745	Hs.333297	NM_001001664	HPRD:11261	SPOPL	BTBD33	speckle-type POZ protein-like	protein-coding
19-PTNLD28-TUMOR_peak_65489	chr22	38657760	38657984	+	16.29426	NA	intron (NM_012264, intron 1 of 8)	intron (NM_012264, intron 1 of 8)	10798	NM_001195071	25829	Hs.182626	NM_012264	HPRD:12801	TMEM184B	C22orf5|FM08|HS5O6A	transmembrane protein 184B	protein-coding
19-PTNLD28-TUMOR_peak_109007	chrX	102510025	102510167	+	16.29426	NA	promoter-TSS (NM_153333)	promoter-TSS (NM_153333)	25	NM_153333	90843	Hs.389734	NM_153333	HPRD:06656	TCEAL8	WEX3	transcription elongation factor A (SII)-like 8	protein-coding
19-PTNLD28-TUMOR_peak_7620	chr1	160696707	160696883	+	16.29426	NA	Intergenic	Intergenic	-12052	NM_001282592	57823	Hs.517265	NM_021181	HPRD:09432	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
19-PTNLD28-TUMOR_peak_68920	chr3	69348552	69348833	+	16.29426	NA	intron (NM_015123, intron 4 of 22)	intron (NM_015123, intron 4 of 22)	86763	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_53313	chr2	69928788	69928998	+	16.29426	NA	Intergenic	L1M5|LINE|L1	-40234	NM_001153	307	Hs.422986	NM_001153	HPRD:00112	ANXA4	ANX4|HEL-S-274|PIG28|ZAP36	annexin A4	protein-coding
19-PTNLD28-TUMOR_peak_19912	chr11	72903411	72903643	+	16.29183	NA	Intergenic	Intergenic	-25816	NM_176072	5029	Hs.339	NM_002564	HPRD:02499	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y, G-protein coupled, 2	protein-coding
19-PTNLD28-TUMOR_peak_46629	chr19	2049904	2050175	+	16.28258	NA	intron (NM_199054, intron 2 of 13)	intron (NM_199054, intron 2 of 13)	1204	NM_199054	2872	Hs.515032	NM_017572	HPRD:05459	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_87897	chr6	49521160	49521336	+	16.28258	NA	Intergenic	Intergenic	3135	NM_001145652	135398	Hs.722010	NM_153344	HPRD:12852	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_15348	chr10	104209440	104209631	+	16.28258	NA	promoter-TSS (NR_038938)	promoter-TSS (NR_038938)	-39	NR_038938	100505761	Hs.656457	NR_038937	ENSG00000269609	RPARP-AS1	-	RPARP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_5379	chr1	109938844	109939074	+	16.27997	NA	intron (NM_002959, intron 1 of 19)	intron (NM_002959, intron 1 of 19)	1604	NM_002959	6272	Hs.485195	NM_002959	HPRD:03910	SORT1	Gp95|LDLCQ6|NT3	sortilin 1	protein-coding
19-PTNLD28-TUMOR_peak_99869	chr8	103740705	103740948	+	16.27817	NA	Intergenic	Intergenic	-72696	NM_005655	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_6920	chr1	153165312	153165428	+	16.27484	NA	Intergenic	Intergenic	-10536	NM_001010857	149018	Hs.125785	NM_001010857	HPRD:17303	LELP1	-	late cornified envelope-like proline-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_42658	chr17	57830920	57831056	+	16.27484	NA	intron (NM_030938, intron 5 of 11)	intron (NM_030938, intron 5 of 11)	46125	NM_030938	81671	Hs.444569	NM_030938	HPRD:15649	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_13193	chr10	43706529	43706694	+	16.27014	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	18576	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_53423	chr2	71970071	71970245	+	16.27014	NA	Intergenic	Intergenic	276326	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_51680	chr2	26863251	26863626	+	16.27014	NA	intron (NM_001029881, intron 1 of 6)	intron (NM_001029881, intron 1 of 6)	773	NM_001029881	130106	Hs.591579	NM_001029881	HPRD:18726	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
19-PTNLD28-TUMOR_peak_74371	chr4	8667578	8667772	+	16.26541	NA	Intergenic	Intergenic	73288	NM_001014448	8532	Hs.61995	NM_003652	HPRD:04376	CPZ	-	carboxypeptidase Z	protein-coding
19-PTNLD28-TUMOR_peak_44965	chr18	22147275	22147447	+	16.26541	NA	Intergenic	Intergenic	-60785	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LOC729950	-	uncharacterized LOC729950	ncRNA
19-PTNLD28-TUMOR_peak_90993	chr7	3592240	3592396	+	16.26541	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	251238	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_69766	chr3	111732460	111732635	+	16.26541	NA	3' UTR (NM_013259, exon 5 of 5)	3' UTR (NM_013259, exon 5 of 5)	14540	NM_001008273	29114	Hs.169330	NM_013259	HPRD:12136	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
19-PTNLD28-TUMOR_peak_57097	chr2	176279712	176279879	+	16.26541	NA	Intergenic	Intergenic	-233305	NM_001190329	518	Hs.429	NM_001689		ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_90182	chr6	156651934	156652103	+	16.26541	NA	Intergenic	L1HS|LINE|L1	-447046	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_76205	chr4	89064692	89064924	+	16.26541	NA	intron (NM_001257386, intron 1 of 15)	intron (NM_001257386, intron 1 of 15)	15203	NM_004827	9429	Hs.480218	NM_004827	HPRD:04783	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding
19-PTNLD28-TUMOR_peak_55216	chr2	118819083	118819258	+	16.26541	NA	Intergenic	MER20|DNA|hAT-Charlie	-26880	NM_016133	51141	Hs.7089	NM_016133	HPRD:16361	INSIG2	-	insulin induced gene 2	protein-coding
19-PTNLD28-TUMOR_peak_56791	chr2	166719423	166719624	+	16.26541	NA	non-coding (NR_045375, exon 2 of 4)	non-coding (NR_045375, exon 2 of 4)	8928	NR_045375	100506124	Hs.709870	NR_045375		LOC100506124	-	uncharacterized LOC100506124	ncRNA
19-PTNLD28-TUMOR_peak_69146	chr3	75642042	75642149	+	16.26541	NA	Intergenic	LTR5A|LTR|ERVK	-37819	NR_031714	100302212		NR_031714	miRBase:MI0006657	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
19-PTNLD28-TUMOR_peak_33899	chr15	63265105	63265349	+	16.26541	NA	Intergenic	Intergenic	-69611	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_69676	chr3	110062246	110062485	+	16.26541	NA	Intergenic	Intergenic	726441	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89527	chr6	134373473	134374028	+	16.26541	NA	promoter-TSS (NM_145176)	promoter-TSS (NM_145176)	39	NM_145176	154091	Hs.486508	NM_145176		SLC2A12	GLUT12|GLUT8	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_13459	chr10	48680194	48680336	+	16.26541	NA	Intergenic	L2b|LINE|L2	126720	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_25938	chr12	104802465	104802665	+	16.26541	NA	Intergenic	MIRc|SINE|MIR	-48127	NM_001173982	50515	Hs.17569	NM_018413	HPRD:13055	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate (chondroitin 4) sulfotransferase 11	protein-coding
19-PTNLD28-TUMOR_peak_90181	chr6	156651542	156651683	+	16.26541	NA	Intergenic	L1HS|LINE|L1	-447452	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_63442	chr21	38405282	38405458	+	16.26541	NA	Intergenic	Intergenic	26507	NM_018962	53820	Hs.254560	NM_018962	HPRD:10923	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
19-PTNLD28-TUMOR_peak_86250	chr6	27662032	27662497	+	16.26276	NA	non-coding (NR_038293, exon 1 of 3)	non-coding (NR_038293, exon 1 of 3)	406	NR_038292	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_59980	chr20	17543486	17543727	+	16.26276	NA	intron (NM_001278608, intron 2 of 9)	intron (NM_001278608, intron 2 of 9)	-4001	NM_001161705	631	Hs.129702	NM_001195	HPRD:04494	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1, filensin	protein-coding
19-PTNLD28-TUMOR_peak_67428	chr3	32611609	32611990	+	16.26276	NA	intron (NM_016141, intron 2 of 12)	CpG	567	NM_016141	51143	Hs.529495	NM_016141	HPRD:10917	DYNC1LI1	DNCLI1|LIC1	dynein, cytoplasmic 1, light intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_43234	chr17	70610221	70610375	+	16.26276	NA	intron (NR_033876, intron 3 of 4)	intron (NR_033876, intron 3 of 4)	-21355	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_65298	chr22	36236468	36236698	+	16.26276	NA	promoter-TSS (NM_001082577)	promoter-TSS (NM_001082577)	47	NM_001082577	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_14027	chr10	71093998	71094192	+	16.26276	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	15492	NM_000188	3098	Hs.370365	NM_000188	HPRD:00809	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_58886	chr2	233498177	233498492	+	16.26272	NA	5' UTR (NM_025202, exon 1 of 4)	5' UTR (NM_025202, exon 1 of 4)	127	NM_025202	80303	Hs.516769	NM_025202	HPRD:13265	EFHD1	MST133|MSTP133|SWS2	EF-hand domain family, member D1	protein-coding
19-PTNLD28-TUMOR_peak_35884	chr16	3045722	3045904	+	16.26272	NA	Intergenic	Intergenic	-3143	NR_110949	101929613	Hs.741644	NR_110947		LOC101929613	-	uncharacterized LOC101929613	ncRNA
19-PTNLD28-TUMOR_peak_35904	chr16	3162404	3162579	+	16.26272	NA	promoter-TSS (NM_003456)	promoter-TSS (NM_003456)	-72	NM_001042428	7755	Hs.592088	NM_003456	HPRD:04580	ZNF205	RhitH|ZNF210|Zfp13	zinc finger protein 205	protein-coding
19-PTNLD28-TUMOR_peak_48933	chr19	39218832	39219044	+	16.26270	NA	intron (NM_004924, intron 19 of 20)	intron (NM_004924, intron 19 of 20)	16176	NM_144691	147968	Hs.731775	NM_144691	HPRD:07007	CAPN12	-	calpain 12	protein-coding
19-PTNLD28-TUMOR_peak_1863	chr1	28763884	28764118	+	16.26043	NA	promoter-TSS (NM_023923)	promoter-TSS (NM_023923)	-660	NM_023923	65979	Hs.225641	NM_023923	HPRD:07816	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
19-PTNLD28-TUMOR_peak_44167	chr17	81185439	81185779	+	16.26043	NA	intron (NR_029406, intron 3 of 3)	LTR10C|LTR|ERV1	10943	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
19-PTNLD28-TUMOR_peak_27505	chr13	25085684	25085895	+	16.26043	NA	intron (NM_006437, intron 1 of 33)	intron (NM_006437, intron 1 of 33)	1159	NM_006437	143	Hs.744855	NM_006437	HPRD:09598	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_43652	chr17	75419861	75420048	+	16.26043	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	18803	NM_001293696	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_18469	chr11	47430718	47430884	+	16.24987	NA	intron (NM_001128225, intron 1 of 9)	intron (NM_001128225, intron 1 of 9)	755	NM_001128225	91252	Hs.523664	NM_152264	ENSG00000165915	SLC39A13	-	solute carrier family 39 (zinc transporter), member 13	protein-coding
19-PTNLD28-TUMOR_peak_61311	chr20	43940284	43940453	+	16.24474	NA	intron (NM_014276, intron 4 of 11)	CpG	-3199	NM_003833	8785	Hs.278489	NM_003833	HPRD:04873	MATN4	-	matrilin 4	protein-coding
19-PTNLD28-TUMOR_peak_38927	chr16	80752472	80752672	+	16.24474	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	85603	NM_152342	124359	Hs.373908	NM_152342	HPRD:10819	CDYL2	PCCP1	chromodomain protein, Y-like 2	protein-coding
19-PTNLD28-TUMOR_peak_101353	chr8	140474305	140474409	+	16.24474	NA	Intergenic	HERVK-int|LTR|ERVK	240942	NR_104210	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_90346	chr6	160016346	160016601	+	16.24474	NA	Intergenic	Intergenic	97880	NM_001024466	6648	Hs.487046	NM_000636	HPRD:00938	SOD2	IPOB|MNSOD|MVCD6	superoxide dismutase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_62975	chr21	27211211	27211468	+	16.24474	NA	Intergenic	Intergenic	-103374	NM_001685	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_1587	chr1	25472812	25473141	+	16.24474	NA	Intergenic	Intergenic	86037	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA-splicing factor	protein-coding
19-PTNLD28-TUMOR_peak_96402	chr7	151288024	151288249	+	16.24474	NA	intron (NM_001040633, intron 6 of 15)	ERVL-E-int|LTR|ERVL	41208	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_17782	chr11	29802880	29803045	+	16.24474	NA	Intergenic	Intergenic	235615	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_40425	chr17	17780890	17781143	+	16.24474	NA	intron (NM_001033551, intron 6 of 13)	intron (NM_001033551, intron 6 of 13)	-40691	NM_004176	6720	Hs.592123	NM_004176	HPRD:01701	SREBF1	SREBP-1c|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_10198	chr1	221898678	221898847	+	16.24474	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	11480	NR_111939	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_853	chr1	12616548	12616787	+	16.24474	NA	Intergenic	Intergenic	22384	NR_106788	102466722		NR_106788		MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
19-PTNLD28-TUMOR_peak_101262	chr8	136935459	136935764	+	16.24474	NA	Intergenic	Intergenic	465895	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_61398	chr20	44773161	44773547	+	16.24474	NA	Intergenic	L2b|LINE|L2	26448	NM_152854	958	Hs.472860	NM_001250	HPRD:00178	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule, TNF receptor superfamily member 5	protein-coding
19-PTNLD28-TUMOR_peak_74773	chr4	24474516	24474870	+	16.24474	NA	Intergenic	CpG	47220	NR_030299	693158		NR_030299	miRBase:MI0003580	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
19-PTNLD28-TUMOR_peak_2651	chr1	39857844	39858032	+	16.24446	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-17238	NM_015038	643314	Hs.658760	NM_015038	ENSG00000255103	KIAA0754	-	KIAA0754	protein-coding
19-PTNLD28-TUMOR_peak_49161	chr19	41833465	41833859	+	16.24318	NA	Intergenic	Intergenic	17568	NM_052848	90324	Hs.437497	NM_052848	HPRD:14467	CCDC97	-	coiled-coil domain containing 97	protein-coding
19-PTNLD28-TUMOR_peak_109937	chrX	153286721	153287073	+	16.24318	NA	TTS (NM_004992)	TTS (NM_004992)	-1457	NR_031757	100313781		NR_031757	miRBase:MI0012489	MIR718	hsa-mir-718	microRNA 718	ncRNA
19-PTNLD28-TUMOR_peak_72987	chr3	186781357	186781570	+	16.24283	NA	intron (NM_173216, intron 5 of 7)	intron (NM_173216, intron 5 of 7)	41798	NM_003032	6480	Hs.207459	NM_003032	HPRD:00184	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	protein-coding
19-PTNLD28-TUMOR_peak_42844	chr17	61912303	61912579	+	16.24283	NA	intron (NM_001098426, intron 5 of 12)	intron (NM_001098426, intron 5 of 12)	7397	NM_001199163	5705	Hs.79387	NM_002805	HPRD:03400	PSMC5	S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome (prosome, macropain) 26S subunit, ATPase, 5	protein-coding
19-PTNLD28-TUMOR_peak_35127	chr15	89559950	89560266	+	16.24283	NA	Intergenic	Intergenic	-71273	NM_007011	11057	Hs.122337	NM_007011	HPRD:09791	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_6955	chr1	153425041	153425165	+	16.23078	NA	Intergenic	Intergenic	8034	NM_002963	6278	Hs.112408	NM_002963	HPRD:02645	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
19-PTNLD28-TUMOR_peak_20375	chr11	83298717	83299255	+	16.23078	NA	intron (NM_001364, intron 14 of 22)	L1PA2|LINE|L1	94482	NM_001142702	1740	Hs.367656	NM_001364	HPRD:04663	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_95196	chr7	129041349	129041524	+	16.23078	NA	intron (NM_001130720, intron 6 of 16)	intron (NM_001130720, intron 6 of 16)	25952	NM_001130722	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_56459	chr2	157578303	157578599	+	16.23078	NA	Intergenic	HERVH-int|LTR|ERV1	285551	NM_000408	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_74968	chr4	38576189	38576421	+	16.23078	NA	Intergenic	Intergenic	-51504	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_83004	chr5	146771498	146771649	+	16.23078	NA	3' UTR (NM_001387, exon 14 of 14)	3' UTR (NM_001387, exon 14 of 14)	61687	NM_001387	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_60225	chr20	23779986	23780277	+	16.23078	NA	Intergenic	Intergenic	27181	NM_001322	1470	Hs.669305	NM_001322	HPRD:00461	CST2	-	cystatin SA	protein-coding
19-PTNLD28-TUMOR_peak_31135	chr14	71237302	71237514	+	16.23078	NA	intron (NM_001284231, intron 1 of 11)	intron (NM_001284231, intron 1 of 11)	12761	NM_001284232	4293	Hs.445496	NM_033141	HPRD:15965	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_99627	chr8	98565721	98566179	+	16.23078	NA	Intergenic	Intergenic	-90457	NM_178812	92140	Hs.377155	NM_178812	HPRD:17459	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
19-PTNLD28-TUMOR_peak_29503	chr14	23630220	23630405	+	16.23078	NA	intron (NM_012244, intron 3 of 10)	intron (NM_012244, intron 3 of 10)	-5645	NM_001267036	23428	Hs.596643	NM_012244	HPRD:11971	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
19-PTNLD28-TUMOR_peak_109867	chrX	152709104	152709277	+	16.22761	NA	TTS (NM_080701)	TTS (NM_080701)	2755	NM_080701	11219	Hs.644635	NM_080699	HPRD:02299	TREX2	-	three prime repair exonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_60854	chr20	35697266	35697400	+	16.22761	NA	intron (NM_183404, intron 2 of 20)	SVA_F|Other|Other	27070	NM_002895	5933	Hs.207745	NM_002895	HPRD:00312	RBL1	CP107|PRB1|p107	retinoblastoma-like 1	protein-coding
19-PTNLD28-TUMOR_peak_80179	chr5	60883026	60883263	+	16.22761	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-50492	NM_173667	285668	Hs.683866	NM_173667	HPRD:09962	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_3794	chr1	58844345	58844462	+	16.22761	NA	Intergenic	L1PA2|LINE|L1	-128192	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_69319	chr3	93708201	93708356	+	16.22761	NA	intron (NM_144996, intron 1 of 7)	intron (NM_144996, intron 1 of 7)	9295	NR_033427	200894	Hs.533086	NM_144996	HPRD:12334	ARL13B	ARL2L1|JBTS8	ADP-ribosylation factor-like 13B	protein-coding
19-PTNLD28-TUMOR_peak_52785	chr2	53994876	53995167	+	16.22761	NA	promoter-TSS (NM_001008708)	promoter-TSS (NM_001008708)	92	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_15723	chr10	115406642	115406881	+	16.22761	NA	exon (NM_001261463, exon 10 of 42)	exon (NM_001261463, exon 10 of 42)	17068	NM_198060	4892	Hs.268788	NM_006175	HPRD:04189	NRAP	N-RAP	nebulin-related anchoring protein	protein-coding
19-PTNLD28-TUMOR_peak_66350	chr3	7829657	7829869	+	16.22761	NA	Intergenic	Intergenic	228231	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
19-PTNLD28-TUMOR_peak_86828	chr6	33303337	33303498	+	16.22761	NA	Intergenic	AluJr|SINE|Alu	-12624	NM_001141970	1616	Hs.336916	NM_001350	HPRD:04424	DAXX	BING2|DAP6|EAP1	death-domain associated protein	protein-coding
19-PTNLD28-TUMOR_peak_55671	chr2	130737224	130737734	+	16.22761	NA	5' UTR (NM_032144, exon 1 of 1)	5' UTR (NM_032144, exon 1 of 1)	244	NM_032144	84084	Hs.591552	NM_032144	HPRD:15201	RAB6C	WTH3	RAB6C, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_102630	chr9	32217365	32217644	+	16.22761	NA	Intergenic	L1PA4|LINE|L1	-167097	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_75070	chr4	41216480	41216677	+	16.22749	NA	promoter-TSS (NM_173075)	promoter-TSS (NM_173075)	57	NM_001166050	323	Hs.479602	NM_004307	HPRD:04088	APBB2	FE65L|FE65L1	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28546	chr13	77903322	77903603	+	16.22749	NA	Intergenic	CpG	-2285	NM_015057	23077	Hs.591221	NM_015057	HPRD:10104	MYCBP2	PAM	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_79740	chr5	43510539	43510704	+	16.22295	NA	intron (NM_198566, intron 1 of 12)	SVA_C|Other|Other	4652	NM_198566	375444	Hs.661641	NM_198566	HPRD:13407	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
19-PTNLD28-TUMOR_peak_84562	chr5	180229336	180229656	+	16.22295	NA	intron (NM_001114617, intron 2 of 2)	CpG	552	NM_002406	4245	Hs.519818	NM_002406	HPRD:01189	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_6797	chr1	151551997	151552144	+	16.22295	NA	intron (NM_001301317, intron 11 of 13)	intron (NM_001301317, intron 11 of 13)	-32592	NM_030918	81609	Hs.192326	NM_030918	HPRD:11591	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
19-PTNLD28-TUMOR_peak_46068	chr18	59992415	59992753	+	16.22045	NA	promoter-TSS (NM_003839)	promoter-TSS (NM_003839)	64	NM_001270949	8792	Hs.204044	NM_003839	HPRD:04609	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_35967	chr16	4250333	4251005	+	16.22045	NA	intron (NM_001098814, intron 3 of 5)	intron (NM_001098814, intron 3 of 5)	41412	NM_001098814	6345	Hs.10041	NM_001098814	ENSG00000185739	SRL	-	sarcalumenin	protein-coding
19-PTNLD28-TUMOR_peak_10720	chr1	229345643	229346066	+	16.22045	NA	Intergenic	LTR64|LTR|ERV1	-60955	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_97361	chr8	17942225	17942567	+	16.21773	NA	promoter-TSS (NM_177924)	promoter-TSS (NM_177924)	19	NR_125429	101929066	Hs.648717	NR_125429	ENSG00000245281	LOC101929066	-	uncharacterized LOC101929066	ncRNA
19-PTNLD28-TUMOR_peak_20016	chr11	74392910	74393095	+	16.21668	NA	Intergenic	Intergenic	38380	NR_039845	100616402		NR_039845		MIR4696	-	microRNA 4696	ncRNA
19-PTNLD28-TUMOR_peak_81684	chr5	115420956	115421189	+	16.21668	NA	intron (NM_016144, intron 1 of 6)	CpG	345	NM_016144	51397	Hs.483136	NM_016144	HPRD:16734	COMMD10	PTD002	COMM domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_2118	chr1	32681332	32681467	+	16.21668	NA	TTS (NM_019118)	TTS (NM_019118)	6527	NM_019118	56063	Hs.272299	NM_019118	HPRD:15270	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
19-PTNLD28-TUMOR_peak_61435	chr20	45029020	45029196	+	16.21296	NA	intron (NM_133171, intron 1 of 21)	intron (NM_133171, intron 1 of 21)	6163	NM_182764	63916	Hs.210469	NM_022086	HPRD:12103	ELMO2	CED-12|CED12|ELMO-2	engulfment and cell motility 2	protein-coding
19-PTNLD28-TUMOR_peak_3164	chr1	45993335	45993472	+	16.21296	NA	Intergenic	Intergenic	-4841	NM_001202431	5052	Hs.180909	NM_002574	HPRD:01458	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
19-PTNLD28-TUMOR_peak_71637	chr3	149299589	149299953	+	16.20308	NA	intron (NM_015472, intron 2 of 6)	intron (NM_015472, intron 2 of 6)	76041	NM_001168280	25937	Hs.477921	NM_015472	HPRD:09580	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_48877	chr19	38757909	38758143	+	16.18963	NA	intron (NM_001166103, intron 1 of 5)	L2a|LINE|L2	2928	NM_021102	10653	Hs.31439	NM_021102	HPRD:05495	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type, 2	protein-coding
19-PTNLD28-TUMOR_peak_104606	chr9	95431373	95431567	+	16.18623	NA	intron (NM_022755, intron 1 of 12)	intron (NM_022755, intron 1 of 12)	1077	NM_022755	64768	Hs.459896	NM_022755	HPRD:10799	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding
19-PTNLD28-TUMOR_peak_12612	chr10	28700712	28700987	+	16.18498	NA	Intergenic	Intergenic	120434	NR_033805	220906	Hs.403253	NR_033805	ENSG00000254635	WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_84365	chr5	177381335	177381516	+	16.18498	NA	Intergenic	AluY|SINE|Alu	41818	NM_006261	5626	Hs.158301	NM_006261	HPRD:03325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_35856	chr16	2896848	2897028	+	16.18498	NA	Intergenic	MER87|LTR|ERV1	-4186	NR_026864	124221	Hs.434388	NM_178453	HPRD:07132	PRSS30P	Disp|TMPRSS8|TMPRSS8P	protease, serine, 30, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26688	chr12	121040323	121040521	+	16.18498	NA	Intergenic	LTR33|LTR|ERVL	-21221	NM_198202	51367	Hs.279913	NM_015918	HPRD:15158	POP5	HSPC004|RPP2|RPP20|hPop5	processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_81665	chr5	114937935	114938466	+	16.18498	NA	promoter-TSS (NM_021649)	promoter-TSS (NM_021649)	-24	NM_021649	353376	Hs.718838	NM_021649	HPRD:16313	TICAM2	MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM	toll-like receptor adaptor molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_77680	chr4	154144056	154144445	+	16.18486	NA	intron (NM_015271, intron 1 of 11)	CpG	18652	NM_015271	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_90184	chr6	156682600	156682929	+	16.18217	NA	Intergenic	L1PA2|LINE|L1	-416300	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_98183	chr8	37425147	37425386	+	16.18217	NA	Intergenic	Intergenic	-46362	NR_121621	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_87199	chr6	37349395	37349647	+	16.18217	NA	intron (NR_046399, intron 7 of 7)	intron (NR_046399, intron 7 of 7)	27773	NM_183078	9025	Hs.485278	NM_003958	HPRD:11521	RNF8	hRNF8	ring finger protein 8, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_33523	chr15	49688568	49688793	+	16.18217	NA	intron (NM_152647, intron 11 of 15)	L1PA2|LINE|L1	-26695	NM_002009	2252	Hs.567268	NM_002009		FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
19-PTNLD28-TUMOR_peak_33130	chr15	40187311	40187421	+	16.18217	NA	intron (NM_001271854, intron 1 of 3)	SVA_F|Other|Other	25727	NM_001271854	11245	Hs.37196	NM_007223	HPRD:13597	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
19-PTNLD28-TUMOR_peak_100069	chr8	109611704	109611950	+	16.18217	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	155974	NM_014673	9694	Hs.654351	NM_014673	HPRD:09657	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_109361	chrX	122952280	122952498	+	16.18217	NA	Intergenic	Intergenic	-41273	NM_001204401	331	Hs.356076	NM_001167	HPRD:02094	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
19-PTNLD28-TUMOR_peak_94100	chr7	97401901	97402086	+	16.18217	NA	Intergenic	Intergenic	40722	NM_013998	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_37604	chr16	46588384	46588681	+	16.18217	NA	intron (NR_026556, intron 4 of 16)	LTR13|LTR|ERVK	14477	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_101312	chr8	139128870	139129026	+	16.18217	NA	Intergenic	L1PA2|LINE|L1	380117	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_86829	chr6	33313019	33313251	+	16.17324	NA	Intergenic	Intergenic	-22342	NM_001141970	1616	Hs.336916	NM_001350	HPRD:04424	DAXX	BING2|DAP6|EAP1	death-domain associated protein	protein-coding
19-PTNLD28-TUMOR_peak_59102	chr2	238500240	238500507	+	16.17324	NA	promoter-TSS (NR_033308)	promoter-TSS (NR_033308)	-604	NR_033308	64284	Hs.44278	NM_022449	HPRD:11468	RAB17	-	RAB17, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_78788	chr5	7991349	7991506	+	16.17054	NA	Intergenic	L2c|LINE|L2	122210	NM_002454	4552	Hs.481551	NM_002454	HPRD:03979	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
19-PTNLD28-TUMOR_peak_32652	chr15	26150435	26150556	+	16.17054	NA	intron (NR_040082, intron 1 of 4)	intron (NR_040082, intron 1 of 4)	2988	NR_040082	100128714	Hs.587854	NR_040082	ENSG00000206187	LOC100128714	-	uncharacterized LOC100128714	ncRNA
19-PTNLD28-TUMOR_peak_31652	chr14	90865962	90866150	+	16.17054	NA	intron (NM_006888, intron 1 of 5)	AmnSINE1|SINE|Deu	2729	NM_006888	801	Hs.282410	NM_006888	HPRD:00241	CALM1	CALML2|CAMI|CPVT4|DD132|PHKD|caM	calmodulin 1 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_59292	chr2	242156845	242157305	+	16.16609	NA	intron (NM_001001891, intron 19 of 24)	CpG	29151	NM_001001891	50636	Hs.163909	NM_001001666	HPRD:16090	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
19-PTNLD28-TUMOR_peak_4350	chr1	73364918	73365074	+	16.16609	NA	Intergenic	L1PA2|LINE|L1	-406857	NR_110677	101927295	Hs.436589	NR_110676	ENSG00000233973	LINC01360	-	long intergenic non-protein coding RNA 1360	ncRNA
19-PTNLD28-TUMOR_peak_49282	chr19	44288613	44288858	+	16.16609	NA	Intergenic	Intergenic	-3326	NM_002250	3783	Hs.10082	NM_002250	HPRD:04130	KCNN4	IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding
19-PTNLD28-TUMOR_peak_83233	chr5	150163125	150163409	+	16.16609	NA	intron (NM_032947, intron 1 of 1)	intron (NM_032947, intron 1 of 1)	5759	NM_032947	85027	Hs.29444	NM_032947	HPRD:12212	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_26119	chr12	108536728	108537143	+	16.16609	NA	intron (NM_014653, intron 1 of 8)	intron (NM_014653, intron 1 of 8)	13424	NM_014653	9671	Hs.143591	NM_014653	HPRD:17196	WSCD2	-	WSC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_96934	chr8	6723052	6723217	+	16.16367	NA	Intergenic	Intergenic	12395	NM_005218	1672	Hs.32949	NM_005218	HPRD:03634	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_39298	chr16	87811525	87811728	+	16.16341	NA	intron (NR_120309, intron 1 of 3)	intron (NR_120309, intron 1 of 3)	1128	NR_120309	102724467	Hs.587857	NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
19-PTNLD28-TUMOR_peak_86956	chr6	34664120	34664506	+	16.16341	NA	exon (NM_024294, exon 1 of 5)	exon (NM_024294, exon 1 of 5)	314	NM_024294	64771	Hs.643498	NM_022758	HPRD:12837	C6orf106	FP852|dJ391O22.4	chromosome 6 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_107238	chrUn_gl000225	172717	172864	+	16.16325	NA	NA	L2c|LINE|L2	NA	NA								
19-PTNLD28-TUMOR_peak_15490	chr10	106109392	106109565	+	16.16325	NA	Intergenic	L2b|LINE|L2	3855	NR_108036	100505869	Hs.338140	NR_108036		CCDC147-AS1	-	CCDC147 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_71786	chr3	152368016	152368181	+	16.16325	NA	Intergenic	Intergenic	-184638	NM_002563	5028	Hs.654526	NM_002563	HPRD:03103	P2RY1	P2Y1	purinergic receptor P2Y, G-protein coupled, 1	protein-coding
19-PTNLD28-TUMOR_peak_746	chr1	11238101	11238609	+	16.16325	NA	intron (NM_004958, intron 28 of 57)	intron (NM_004958, intron 28 of 57)	-10991	NM_021146	10218	Hs.146559	NM_021146	HPRD:10818	ANGPTL7	AngX|CDT6|dJ647M16.1	angiopoietin-like 7	protein-coding
19-PTNLD28-TUMOR_peak_108583	chrX	66162689	66163230	+	16.16201	NA	Intergenic	L1PA2|LINE|L1	-303819	NM_001199687	60401	Hs.302017	NM_021783	HPRD:02230	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_87045	chr6	35705407	35705565	+	16.16201	NA	promoter-TSS (NR_027117)	promoter-TSS (NR_027117)	677	NM_001286574	221481	Hs.533066	NM_145028	HPRD:12901	ARMC12	C6orf81	armadillo repeat containing 12	protein-coding
19-PTNLD28-TUMOR_peak_105549	chr9	116571065	116571205	+	16.16201	NA	Intergenic	Intergenic	-67427	NM_133374	114991	Hs.349208	NM_133374	HPRD:18719	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
19-PTNLD28-TUMOR_peak_100100	chr8	110703710	110704266	+	16.16201	NA	promoter-TSS (NM_001099743)	promoter-TSS (NM_001099743)	32	NM_001099744	55638	Hs.390738	NM_017786	HPRD:07902	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
19-PTNLD28-TUMOR_peak_92458	chr7	47709203	47709360	+	16.16201	NA	Intergenic	Intergenic	14439	NM_001123065	401335	Hs.520816	NM_001123065	ENSG00000221845	C7orf65	-	chromosome 7 open reading frame 65	protein-coding
19-PTNLD28-TUMOR_peak_11721	chr10	3674034	3674523	+	16.16201	NA	Intergenic	Intergenic	153195	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_60068	chr20	19388414	19388758	+	16.16201	NA	intron (NM_020689, intron 2 of 16)	intron (NM_020689, intron 2 of 16)	-123346	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	ncRNA
19-PTNLD28-TUMOR_peak_84147	chr5	174082363	174082651	+	16.16201	NA	Intergenic	Intergenic	-69068	NM_002449	4488	Hs.89404	NM_002449	HPRD:00421	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_86982	chr6	35089022	35089347	+	16.16201	NA	intron (NM_001093728, intron 5 of 9)	AT_rich|Low_complexity|Low_complexity	20003	NM_001261818	6954	Hs.435371	NM_018679	HPRD:01749	TCP11	D6S230E|FPPR	t-complex 11, testis-specific	protein-coding
19-PTNLD28-TUMOR_peak_32762	chr15	29906268	29906475	+	16.16201	NA	Intergenic	Intergenic	-43444	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_85404	chr6	12211163	12211402	+	16.15757	NA	Intergenic	Intergenic	-79247	NM_001168319	1906	Hs.511899	NM_001955	HPRD:07030	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
19-PTNLD28-TUMOR_peak_83330	chr5	152527995	152528194	+	16.15757	NA	Intergenic	L1PA16|LINE|L1	-176185	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19-PTNLD28-TUMOR_peak_14453	chr10	79165585	79165742	+	16.15757	NA	intron (NM_001271519, intron 1 of 28)	intron (NM_001271519, intron 1 of 28)	231914	NM_001271520	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_72517	chr3	177476902	177477094	+	16.15757	NA	Intergenic	MER41B|LTR|ERV1	-57655	NR_110826	102724550	Hs.570526	NR_110826		LOC102724550	-	uncharacterized LOC102724550	ncRNA
19-PTNLD28-TUMOR_peak_103409	chr9	65893843	65894094	+	16.15757	NA	Intergenic	Intergenic	-384358	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_78899	chr5	10533456	10533715	+	16.15757	NA	Intergenic	Intergenic	-30745	NR_104606	101929412	Hs.508287	NR_104606	ENSG00000249396	LOC101929412	-	uncharacterized LOC101929412	ncRNA
19-PTNLD28-TUMOR_peak_103793	chr9	74280295	74280498	+	16.15757	NA	Intergenic	MSTC|LTR|ERVL-MaLR	103404	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_56861	chr2	169928090	169928274	+	16.15568	NA	promoter-TSS (NM_001142270)	promoter-TSS (NM_001142270)	-903	NM_001142270	10170	Hs.179608	NM_005771	HPRD:09916	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4	dehydrogenase/reductase (SDR family) member 9	protein-coding
19-PTNLD28-TUMOR_peak_96226	chr7	149412181	149412441	+	16.14895	NA	5' UTR (NM_032534, exon 1 of 17)	5' UTR (NM_032534, exon 1 of 17)	209	NM_001290187	84626	Hs.299560	NM_032534	HPRD:11167	KRBA1	-	KRAB-A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97023	chr8	8095757	8096070	+	16.14895	NA	non-coding (NR_024362, exon 8 of 8)	non-coding (NR_024362, exon 8 of 8)	9821	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_57302	chr2	182756851	182757495	+	16.14250	NA	intron (NR_109843, intron 1 of 17)	CpG	730	NM_001287505	6744	Hs.196983	NM_006751	HPRD:00353	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_76076	chr4	85425144	85425260	+	16.14250	NA	Intergenic	Intergenic	-5815	NM_006168	4825	Hs.546270	NM_006168		NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_65327	chr22	36721256	36721545	+	16.13877	NA	intron (NM_002473, intron 5 of 40)	intron (NM_002473, intron 5 of 40)	-38447	NR_106877	102465491		NR_106877		MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19-PTNLD28-TUMOR_peak_51786	chr2	27984451	27984658	+	16.13877	NA	Intergenic	Intergenic	-10030	NM_004891	9553	Hs.515879	NM_004891	HPRD:14753	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L	mitochondrial ribosomal protein L33	protein-coding
19-PTNLD28-TUMOR_peak_50696	chr1_gl000192_random	532954	533067	+	16.13866	NA	Intergenic	Intergenic	-64327	NR_120328	102724558	Hs.712738	NR_120328		LOC102724558	-	uncharacterized LOC102724558	ncRNA
19-PTNLD28-TUMOR_peak_17522	chr11	18785954	18786110	+	16.12566	NA	intron (NM_001278236, intron 3 of 14)	intron (NM_001278236, intron 3 of 14)	27357	NM_001278238	84867	Hs.79092	NM_006906	HPRD:01472	PTPN5	PTPSTEP|STEP	protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)	protein-coding
19-PTNLD28-TUMOR_peak_57605	chr2	196850587	196850848	+	16.12566	NA	intron (NM_018897, intron 14 of 64)	L2c|LINE|L2	82819	NM_018897	56171	Hs.97403	NM_018897	HPRD:10914	DNAH7	-	dynein, axonemal, heavy chain 7	protein-coding
19-PTNLD28-TUMOR_peak_54458	chr2	100253203	100253453	+	16.12566	NA	intron (NM_001025108, intron 12 of 23)	intron (NM_001025108, intron 12 of 23)	-146848	NM_001037872	51455	Hs.443077	NM_016316	HPRD:16202	REV1	REV1L	REV1, polymerase (DNA directed)	protein-coding
19-PTNLD28-TUMOR_peak_15684	chr10	114206504	114206789	+	16.12566	NA	promoter-TSS (NM_145206)	promoter-TSS (NM_145206)	26	NM_022494	64429	Hs.196990	NM_022494	HPRD:15721	ZDHHC6	ZNF376	zinc finger, DHHC-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_52826	chr2	54893503	54893795	+	16.12566	NA	intron (NM_003128, intron 34 of 35)	intron (NM_003128, intron 34 of 35)	-58500	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
19-PTNLD28-TUMOR_peak_31423	chr14	77534648	77534833	+	16.12566	NA	TTS (NR_110553)	TTS (NR_110553)	7794	NR_110553	102724190	Hs.562528	NR_110553		LOC102724190	-	uncharacterized LOC102724190	ncRNA
19-PTNLD28-TUMOR_peak_103312	chr9	45198950	45199186	+	16.12566	NA	Intergenic	Intergenic	-193778	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_29550	chr14	24527578	24527932	+	16.12566	NA	intron (NM_138360, intron 17 of 39)	intron (NM_138360, intron 17 of 39)	6549	NM_138360	90668	Hs.26135	NM_138360	HPRD:11278	LRRC16B	C14orf121|CARMIL3|crml-1	leucine rich repeat containing 16B	protein-coding
19-PTNLD28-TUMOR_peak_525	chr1	8472338	8472517	+	16.12493	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	11320	NM_001042682	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_92690	chr7	56131909	56132246	+	16.12493	NA	TTS (NM_001762)	TTS (NM_001762)	160	NM_001042469	25870	Hs.279696	NM_015411	HPRD:06400	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
19-PTNLD28-TUMOR_peak_55734	chr2	131800193	131800326	+	16.12493	NA	intron (NM_032995, intron 9 of 11)	intron (NM_032995, intron 9 of 11)	50745	NM_001009993	130074	Hs.534679	NM_001009993	HPRD:17295	FAM168B	MANI	family with sequence similarity 168, member B	protein-coding
19-PTNLD28-TUMOR_peak_28073	chr13	45010904	45011088	+	16.12493	NA	promoter-TSS (NM_006022)	promoter-TSS (NM_006022)	64	NM_006022	8848	Hs.436383	NM_006022		TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_19483	chr11	67142364	67142653	+	16.12473	NA	promoter-TSS (NM_001166212)	promoter-TSS (NM_001166212)	-860	NM_001166212	23529	Hs.502977	NM_013246	HPRD:09643	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin-like cytokine factor 1	protein-coding
19-PTNLD28-TUMOR_peak_18868	chr11	61273281	61273429	+	16.12400	NA	Intergenic	Intergenic	-2713	NR_039708	100616470		NR_039708	miRBase:MI0016849	MIR4488	-	microRNA 4488	ncRNA
19-PTNLD28-TUMOR_peak_11819	chr10	5637573	5637849	+	16.11808	NA	Intergenic	Intergenic	-69502	NR_120497	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81245	chr5	95992927	95993074	+	16.11808	NA	Intergenic	Intergenic	-4741	NM_001190442	831	Hs.436186	NM_001750	HPRD:00233	CAST	BS-17	calpastatin	protein-coding
19-PTNLD28-TUMOR_peak_3818	chr1	59250794	59250982	+	16.11750	NA	promoter-TSS (NR_034015)	promoter-TSS (NR_034015)	65	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_14333	chr10	75489989	75490472	+	16.11361	NA	promoter-TSS (NR_026592)	promoter-TSS (NR_026592)	42	NR_026592	729096	Hs.709171	NR_026592		BMS1P4	BMS1LP4	BMS1 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_57879	chr2	203293988	203294523	+	16.11361	NA	intron (NM_001204, intron 1 of 12)	intron (NM_001204, intron 1 of 12)	53205	NM_001204	659	Hs.471119	NM_001204	HPRD:02880	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_74414	chr4	9124591	9124745	+	16.11361	NA	Intergenic	HERVK-int|LTR|ERVK	-87715	NM_001256852	100287144	Hs.741130	NM_001256852	ENSG00000231396	USP17L10	-	ubiquitin specific peptidase 17-like family member 10	protein-coding
19-PTNLD28-TUMOR_peak_31128	chr14	71165140	71165316	+	16.11361	NA	promoter-TSS (NR_125769)	promoter-TSS (NR_125769)	-187	NR_125769	103695436	Hs.572296	NR_125769		LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
19-PTNLD28-TUMOR_peak_7121	chr1	154869485	154869791	+	16.11225	NA	Intergenic	Intergenic	-26884	NM_002249	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_107587	chrX	13505067	13505271	+	16.11225	NA	Intergenic	AluY|SINE|Alu	-82525	NM_001167890	25975	Hs.12844	NM_015507	HPRD:02212	EGFL6	MAEG|W80	EGF-like-domain, multiple 6	protein-coding
19-PTNLD28-TUMOR_peak_36628	chr16	19443147	19443592	+	16.11202	NA	intron (NM_001105249, intron 2 of 20)	intron (NM_001105249, intron 2 of 20)	14351	NM_001261841	79838	Hs.115838	NM_024780	HPRD:15516	TMC5	-	transmembrane channel-like 5	protein-coding
19-PTNLD28-TUMOR_peak_48529	chr19	33539887	33540136	+	16.11142	NA	intron (NM_033103, intron 1 of 14)	intron (NM_033103, intron 1 of 14)	15813	NM_033103	85415	Hs.466435	NM_033103	HPRD:10192	RHPN2	P76RBE|RHOBP	rhophilin, Rho GTPase binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_102880	chr9	35749602	35749762	+	16.11104	NA	promoter-TSS (NM_020944)	promoter-TSS (NM_020944)	405	NM_001080496	9827	Hs.493804	NM_001080496		RGP1	KIAA0258	RGP1 retrograde golgi transport homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_105534	chr9	116342898	116343277	+	16.10397	NA	promoter-TSS (NM_001282922)	promoter-TSS (NM_001282922)	-70	NM_001282922	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_3243	chr1	46993704	46993934	+	16.10218	NA	Intergenic	Intergenic	-10549	NR_038403	100507423	Hs.601863	NR_038403	ENSG00000269956	MKNK1-AS1	-	MKNK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21214	chr11	112655862	112656088	+	16.10020	NA	Intergenic	Intergenic	-175994	NM_181351	4684	Hs.503878	NM_000615	HPRD:00301	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_94918	chr7	116363942	116364100	+	16.09982	NA	intron (NM_001127500, intron 2 of 20)	L1PA2|LINE|L1	51562	NM_001127500	4233	Hs.132966	NM_000245	HPRD:01280	MET	AUTS9|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_20759	chr11	96197160	96197329	+	16.09982	NA	intron (NR_047481, intron 1 of 4)	intron (NR_047481, intron 1 of 4)	42797	NR_047481	100874053	Hs.742044	NR_047481		JRKL-AS1	-	JRKL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46234	chr18	70342766	70343068	+	16.09982	NA	Intergenic	Intergenic	-131194	NM_182511	147381	Hs.569851	NM_182511	HPRD:15970	CBLN2	-	cerebellin 2 precursor	protein-coding
19-PTNLD28-TUMOR_peak_77354	chr4	142804221	142804469	+	16.09982	NA	Intergenic	L1PA2|LINE|L1	246596	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_11194	chr1	237646196	237646371	+	16.09982	NA	intron (NM_001035, intron 17 of 104)	intron (NM_001035, intron 17 of 104)	-379192	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89423	chr6	128977143	128977537	+	16.09982	NA	Intergenic	Intergenic	-135521	NM_001291984	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_26001	chr12	106276135	106276573	+	16.09982	NA	Intergenic	Intergenic	175802	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_44089	chr17	80266951	80267231	+	16.09982	NA	Intergenic	Intergenic	8389	NM_006137	924	Hs.36972	NM_006137	HPRD:01732	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
19-PTNLD28-TUMOR_peak_93919	chr7	91818604	91818729	+	16.09982	NA	Intergenic	L1PA3|LINE|L1	-24076	NM_001161528	401387	Hs.671729	NM_001045475	ENSG00000240720	LRRD1	-	leucine-rich repeats and death domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_106477	chr9	134242213	134242420	+	16.09982	NA	Intergenic	LTR35A|LTR|ERV1	-63161	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline-rich coiled-coil 2B	protein-coding
19-PTNLD28-TUMOR_peak_8883	chr1	185703293	185703697	+	16.09982	NA	promoter-TSS (NM_031935)	promoter-TSS (NM_031935)	-188	NM_031935	83872	Hs.58877	NM_031935	HPRD:06509	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
19-PTNLD28-TUMOR_peak_44271	chr18	2247579	2247759	+	16.09982	NA	Intergenic	L1PA2|LINE|L1	323820	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_76481	chr4	106201554	106201997	+	16.09982	NA	TTS (NM_001127208)	TTS (NM_001127208)	133933	NM_001127208	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_26924	chr12	124103110	124103265	+	16.09982	NA	intron (NM_020936, intron 11 of 13)	intron (NM_020936, intron 11 of 13)	-15099	NM_001271868	2967	Hs.355348	NM_001516	HPRD:07531	GTF2H3	BTF2|P34|TFB4|TFIIH	general transcription factor IIH, polypeptide 3, 34kDa	protein-coding
19-PTNLD28-TUMOR_peak_17791	chr11	30177091	30177315	+	16.09982	NA	Intergenic	Intergenic	-75360	NM_000510	2488	Hs.36975	NM_000510	HPRD:00644	FSHB	-	follicle stimulating hormone, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_89908	chr6	149190109	149190293	+	16.09982	NA	intron (NM_005715, intron 1 of 7)	MIRb|SINE|MIR	95619	NR_038408	100128176	Hs.557541	NR_038408		LOC100128176	-	uncharacterized LOC100128176	ncRNA
19-PTNLD28-TUMOR_peak_77092	chr4	133739254	133739540	+	16.09982	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-331073	NM_032961	57575	Hs.192859	NM_020815		PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
19-PTNLD28-TUMOR_peak_14768	chr10	89061386	89061528	+	16.09982	NA	intron (NR_024397, intron 3 of 5)	intron (NR_024397, intron 3 of 5)	-40711	NR_029408	439994	Hs.651188	NR_029408		LOC439994	-	uncharacterized LOC439994	ncRNA
19-PTNLD28-TUMOR_peak_89246	chr6	117627662	117627844	+	16.09982	NA	intron (NM_002944, intron 41 of 42)	intron (NM_002944, intron 41 of 42)	41032	NM_153453	245806	Hs.99324	NM_153453	HPRD:18282	VGLL2	VGL2|VITO1	vestigial-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_30633	chr14	61227458	61227628	+	16.09982	NA	intron (NM_001177963, intron 1 of 6)	intron (NM_001177963, intron 1 of 6)	26084	NM_002431	4331	Hs.509523	NM_002431	HPRD:04042	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT CDK-activating kinase assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_64624	chr22	22676489	22676644	+	16.09982	NA	intron (NR_027293, intron 10 of 10)	intron (NR_027293, intron 10 of 10)	24103	NR_027293	96610	Hs.449601	NM_080926	HPRD:14302	BMS1P20	-	BMS1 pseudogene 20	pseudo
19-PTNLD28-TUMOR_peak_75366	chr4	55796390	55796790	+	16.09982	NA	Intergenic	Intergenic	195172	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_9872	chr1	209439919	209440538	+	16.09982	NA	Intergenic	L3|LINE|CR1	-161940	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_85942	chr6	24117356	24117519	+	16.09982	NA	Intergenic	Intergenic	-8977	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_78137	chr4	178621056	178621298	+	16.09982	NA	Intergenic	Intergenic	-28734	NR_028342	285501	Hs.722466	NM_001085490	ENSG00000231171	LINC01098	-	long intergenic non-protein coding RNA 1098	ncRNA
19-PTNLD28-TUMOR_peak_98872	chr8	56923286	56923410	+	16.09662	NA	3' UTR (NM_002350, exon 13 of 13)	3' UTR (NM_002350, exon 13 of 13)	63112	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
19-PTNLD28-TUMOR_peak_59420	chr20	1196890	1197090	+	16.09662	NA	Intergenic	LTR13A|LTR|ERVK	-9774	NM_001136566	642636	Hs.713451	NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21-like 1 (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_79049	chr5	15003670	15003870	+	16.09662	NA	Intergenic	Intergenic	-131883	NM_054027	56172	Hs.156727	NM_054027	HPRD:05509	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
19-PTNLD28-TUMOR_peak_50340	chr19	55652734	55652862	+	16.09662	NA	intron (NM_003283, intron 7 of 13)	intron (NM_003283, intron 7 of 13)	7924	NM_001126132	7138	Hs.631558	NM_003283	HPRD:01841	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T type 1 (skeletal, slow)	protein-coding
19-PTNLD28-TUMOR_peak_68527	chr3	57082011	57082439	+	16.09662	NA	intron (NM_001128615, intron 1 of 12)	intron (NM_001128615, intron 1 of 12)	-12244	NM_181727	353324	Hs.129794	NM_181727	HPRD:15426	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
19-PTNLD28-TUMOR_peak_64483	chr22	21071868	21072262	+	16.09662	NA	exon (NM_058004, exon 45 of 55)	exon (NM_058004, exon 45 of 55)	16663	NR_026815	84222	Hs.546454	NM_032262	HPRD:13197	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_2432	chr1	36745090	36745263	+	16.09662	NA	intron (NM_005119, intron 2 of 11)	intron (NM_005119, intron 2 of 11)	-26818	NM_001162530	79729	Hs.524496	NM_024676	HPRD:08011	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
19-PTNLD28-TUMOR_peak_103222	chr9	42544125	42544294	+	16.09662	NA	Intergenic	Intergenic	50692	NR_121572	100132541	Hs.646257	NR_121572		GXYLT1P3	-	glucoside xylosyltransferase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_15432	chr10	105456315	105456532	+	16.09662	NA	intron (NM_014631, intron 5 of 13)	intron (NM_014631, intron 5 of 13)	-50114	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29433	chr14	22888672	22888914	+	16.09662	NA	Intergenic	Intergenic	169350	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_107961	chrX	39472750	39473278	+	16.09662	NA	Intergenic	CpG	-221986	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
19-PTNLD28-TUMOR_peak_80971	chr5	81096729	81096907	+	16.09662	NA	Intergenic	Intergenic	-49746	NM_001256736	23635	Hs.102735	NM_012446		SSBP2	HSPC116|SOSS-B2	single-stranded DNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_21842	chr11	124337421	124337806	+	16.09662	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-26632	NM_012378	26493	Hs.351822	NM_012378	ENSG00000197125	OR8B8	TPCR85	olfactory receptor, family 8, subfamily B, member 8	protein-coding
19-PTNLD28-TUMOR_peak_39009	chr16	82011403	82011590	+	16.09662	NA	Intergenic	L1PA3|LINE|L1	33597	NM_145168	93517	Hs.87779	NM_145168	HPRD:17118	SDR42E1	-	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
19-PTNLD28-TUMOR_peak_73681	chr3	197477475	197477659	+	16.08903	NA	promoter-TSS (NM_001145642)	promoter-TSS (NM_001145642)	306	NR_027840	84248	Hs.277533	NM_032288		FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_86858	chr6	33558570	33558863	+	16.08529	NA	intron (NR_027908, intron 1 of 1)	intron (NR_027908, intron 1 of 1)	2399	NR_027908	401253	Hs.520075	NM_207497	HPRD:16966	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
19-PTNLD28-TUMOR_peak_44079	chr17	80231205	80231425	+	16.08475	NA	non-coding (NR_110578, exon 1 of 9)	non-coding (NR_110578, exon 1 of 9)	279	NM_139062	1453	Hs.631725	NM_001893	HPRD:02920	CSNK1D	ASPS|CKIdelta|FASPS2|HCKID	casein kinase 1, delta	protein-coding
19-PTNLD28-TUMOR_peak_37875	chr16	53938619	53938880	+	16.08466	NA	intron (NM_001080432, intron 7 of 8)	intron (NM_001080432, intron 7 of 8)	-134556	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49084	chr19	40993840	40994198	+	16.08466	NA	intron (NM_020971, intron 3 of 35)	intron (NM_020971, intron 3 of 35)	20893	NM_020971	57731	Hs.32706	NM_020971	HPRD:09372	SPTBN4	QV|SPNB4|SPTBN3	spectrin, beta, non-erythrocytic 4	protein-coding
19-PTNLD28-TUMOR_peak_31801	chr14	94013067	94013277	+	16.08466	NA	intron (NM_020818, intron 14 of 49)	MER31-int|LTR|ERV1	199635	NM_182971	341947	Hs.666459	NM_182971	HPRD:13090	COX8C	COX8-3	cytochrome c oxidase subunit VIIIC	protein-coding
19-PTNLD28-TUMOR_peak_78078	chr4	174443043	174443595	+	16.08466	NA	Intergenic	Intergenic	8059	NM_021973	9464	Hs.388245	NM_021973	HPRD:03872	HAND2	DHAND2|Hed|Thing2|bHLHa26|dHand	heart and neural crest derivatives expressed 2	protein-coding
19-PTNLD28-TUMOR_peak_14504	chr10	79963882	79964353	+	16.08466	NA	Intergenic	Intergenic	-44265	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
19-PTNLD28-TUMOR_peak_81111	chr5	90374909	90375155	+	16.08466	NA	intron (NR_003149, intron 86 of 89)	intron (NR_003149, intron 86 of 89)	235187	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77548	chr4	150928818	150929025	+	16.08466	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-70505	NM_001040260	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_49753	chr19	49251263	49251406	+	16.08337	NA	TTS (NM_000148)	TTS (NM_000148)	-1168	NM_182575	284359	Hs.400688	NM_182575	HPRD:14589	IZUMO1	IZUMO	izumo sperm-egg fusion 1	protein-coding
19-PTNLD28-TUMOR_peak_36242	chr16	10695377	10695648	+	16.07979	NA	Intergenic	Intergenic	-20973	NM_001424	2013	Hs.531561	NM_001424	HPRD:11893	EMP2	NPHS10|XMP	epithelial membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_94410	chr7	100926221	100926503	+	16.07979	NA	Intergenic	Intergenic	-25259	NR_110115	101927746	Hs.698373	NR_110115		LOC101927746	-	uncharacterized LOC101927746	ncRNA
19-PTNLD28-TUMOR_peak_96206	chr7	149083330	149083555	+	16.07879	NA	Intergenic	L1MEg|LINE|L1	74611	NM_015694	27153	Hs.38512	NM_015694	HPRD:13849	ZNF777	-	zinc finger protein 777	protein-coding
19-PTNLD28-TUMOR_peak_101413	chr8	141647600	141647722	+	16.07588	NA	Intergenic	Intergenic	-2015	NM_001164623	27161	Hs.743313	NM_012154	HPRD:06943	AGO2	EIF2C2|Q10	argonaute RISC catalytic component 2	protein-coding
19-PTNLD28-TUMOR_peak_9370	chr1	202830021	202830163	+	16.07536	NA	promoter-TSS (NR_002929)	promoter-TSS (NR_002929)	-790	NR_002929	148709	Hs.162880	NR_002929	ENSG00000234996	LOC148709	-	actin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10264	chr1	223302757	223303102	+	16.07536	NA	intron (NM_003268, intron 5 of 5)	intron (NM_003268, intron 5 of 5)	13695	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_8554	chr1	180198501	180198939	+	16.07536	NA	promoter-TSS (NM_033343)	promoter-TSS (NM_033343)	-713	NM_033343	89884	Hs.658487	NM_033343		LHX4	CPHD4	LIM homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_26993	chr12	125139929	125140057	+	16.06706	NA	Intergenic	L2b|LINE|L2	-87983	NM_001206654	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_14491	chr10	79719033	79719588	+	16.06706	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	32740	NR_024585	100128292	Hs.547908	NR_024585		DLG5-AS1	-	DLG5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_106510	chr9	135045233	135045417	+	16.06706	NA	intron (NM_032536, intron 2 of 7)	intron (NM_032536, intron 2 of 7)	7991	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_61738	chr20	48586516	48586741	+	16.06706	NA	Intergenic	Intergenic	-12885	NM_005985	6615	Hs.48029	NM_005985	HPRD:05025	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_84090	chr5	173222706	173222885	+	16.06605	NA	Intergenic	Intergenic	-4850	NR_108028	101928154	Hs.366725	NR_108028		LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
19-PTNLD28-TUMOR_peak_90023	chr6	151178817	151179117	+	16.06477	NA	Intergenic	LTR47B|LTR|ERVL	-7848	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_94467	chr7	101514104	101514346	+	16.06477	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	53343	NM_181552	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_52475	chr2	44518830	44519045	+	16.06477	NA	intron (NM_000341, intron 4 of 9)	intron (NM_000341, intron 4 of 9)	16340	NM_000341	6519	Hs.112916	NM_000341		SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 (amino acid transporter heavy chain), member 1	protein-coding
19-PTNLD28-TUMOR_peak_91921	chr7	32931318	32931443	+	16.05896	NA	promoter-TSS (NM_015483)	promoter-TSS (NM_015483)	88	NM_015483	25948	Hs.372541	NM_015483	HPRD:13756	KBTBD2	BKLHD1	kelch repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24842	chr12	58885050	58885347	+	16.05896	NA	Intergenic	Intergenic	290300	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_72694	chr3	183100252	183100421	+	16.05896	NA	intron (NM_015078, intron 2 of 29)	intron (NM_015078, intron 2 of 29)	45721	NM_015078	23101	Hs.208267	NM_015078	HPRD:08308	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
19-PTNLD28-TUMOR_peak_44162	chr17	81143519	81143650	+	16.05855	NA	Intergenic	Intergenic	-31082	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
19-PTNLD28-TUMOR_peak_13534	chr10	50261681	50261957	+	16.05855	NA	intron (NM_001031746, intron 5 of 7)	intron (NM_001031746, intron 5 of 7)	61758	NM_144984	196740	Hs.522928	NM_144984	HPRD:08503	VSTM4	C10orf72	V-set and transmembrane domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_66372	chr3	8540872	8541176	+	16.04946	NA	intron (NR_033378, intron 1 of 3)	intron (NR_033378, intron 1 of 3)	2320	NR_033378	100288428	Hs.651576	NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_66148	chr22	51234863	51235155	+	16.03856	NA	intron (NR_026981, intron 3 of 3)	LTR10C|LTR|ERV1	12852	NR_026982	284942	Hs.406135	NM_203302		RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
19-PTNLD28-TUMOR_peak_34963	chr15	84976547	84976802	+	16.03856	NA	promoter-TSS (NR_120379)	promoter-TSS (NR_120379)	-543	NR_120379	103171574	Hs.694638	NR_120379		LOC103171574	-	uncharacterized LOC103171574	ncRNA
19-PTNLD28-TUMOR_peak_44286	chr18	2656390	2656603	+	16.03503	NA	intron (NM_015295, intron 1 of 47)	CpG	610	NM_015295	23347	Hs.8118	NM_015295	ENSG00000101596	SMCHD1	-	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38979	chr16	81557010	81557445	+	16.03435	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-10280	NR_107008	102465840		NR_107008		MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
19-PTNLD28-TUMOR_peak_71555	chr3	148284465	148284567	+	16.03167	NA	Intergenic	HERVK-int|LTR|ERVK	-131142	NM_009585	185	Hs.477887	NM_000685	HPRD:00107	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_88466	chr6	80177879	80178051	+	16.03167	NA	Intergenic	Intergenic	69182	NM_181714	167691	Hs.21945	NM_181714	HPRD:10791	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
19-PTNLD28-TUMOR_peak_38551	chr16	70488194	70488506	+	16.03167	NA	promoter-TSS (NM_145059)	promoter-TSS (NM_145059)	-148	NM_145059	197258	Hs.7907	NM_145059	HPRD:16365	FUK	1110046B12Rik	fucokinase	protein-coding
19-PTNLD28-TUMOR_peak_104210	chr9	86833370	86833580	+	16.03167	NA	Intergenic	Intergenic	122219	NM_001199633	64078	Hs.535966	NM_022127	HPRD:12200	SLC28A3	CNT3	solute carrier family 28 (concentrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_31284	chr14	75050867	75051111	+	16.03167	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	28045	NM_000428	4053	Hs.512776	NM_000428	HPRD:03650	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_66004	chr22	46828509	46828674	+	16.03167	NA	intron (NM_014246, intron 5 of 34)	intron (NM_014246, intron 5 of 34)	97293	NM_001282783	55687	Hs.439524	NM_018006	HPRD:15571	TRMU	MTO2|MTU1|TRMT|TRMT1|TRNT1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_67484	chr3	35706018	35706165	+	16.03167	NA	intron (NM_016300, intron 1 of 19)	intron (NM_016300, intron 1 of 19)	-15022	NM_001267618	10777	Hs.475902	NM_016300	HPRD:09265	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	cAMP-regulated phosphoprotein, 21kDa	protein-coding
19-PTNLD28-TUMOR_peak_97954	chr8	29172283	29172471	+	16.03167	NA	Intergenic	Intergenic	33945	NM_057158	1846	Hs.417962	NM_001394	HPRD:04123	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
19-PTNLD28-TUMOR_peak_13531	chr10	50209430	50209727	+	16.03167	NA	Intergenic	L2a|LINE|L2	-15946	NR_036182	100422895		NR_036182	miRBase:MI0015827	MIR4294	-	microRNA 4294	ncRNA
19-PTNLD28-TUMOR_peak_50666	chr1_gl000192_random	231828	232069	+	16.03167	NA	intron (NR_103556, intron 17 of 45)	L1HS|LINE|L1	175562	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_21609	chr11	119875499	119875772	+	16.03167	NA	Intergenic	MER21C|LTR|ERVL	133228	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_30899	chr14	68205931	68206161	+	16.03167	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	37443	NM_152443	145226	Hs.415322	NM_152443	HPRD:10585	RDH12	LCA13|LCA3|RP53|SDR7C2	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_90531	chr6	167680384	167680724	+	16.02785	NA	Intergenic	Intergenic	-24249	NM_001143947	54346	Hs.567508	NM_018974	HPRD:12148	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_91086	chr7	5554365	5554563	+	16.02294	NA	Intergenic	AluJr|SINE|Alu	-1065	NM_024963	80028	Hs.623974	NM_024963	HPRD:07753	FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
19-PTNLD28-TUMOR_peak_104314	chr9	89407173	89407298	+	16.01814	NA	Intergenic	Intergenic	154869	NM_002048	2619	Hs.65029	NM_002048	HPRD:00747	GAS1	-	growth arrest-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_104573	chr9	94534261	94534462	+	16.01814	NA	intron (NM_004560, intron 2 of 8)	intron (NM_004560, intron 2 of 8)	-135734	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	ncRNA
19-PTNLD28-TUMOR_peak_45122	chr18	29738114	29738286	+	16.01814	NA	Intergenic	Intergenic	-31787	NM_005925	4225	Hs.194777	NM_005925	HPRD:02667	MEP1B	-	meprin A, beta	protein-coding
19-PTNLD28-TUMOR_peak_73045	chr3	187712626	187712760	+	16.01814	NA	Intergenic	Intergenic	-158968	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_100350	chr8	120366285	120366596	+	16.01814	NA	Intergenic	Intergenic	-62112	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_40281	chr17	15325894	15326209	+	16.01814	NA	Intergenic	L2a|LINE|L2	44874	NM_001204477	284040	Hs.164595	NM_173622	HPRD:08208	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_107707	chrX	18757860	18758347	+	16.01814	NA	intron (NM_152226, intron 6 of 17)	L1PA5|LINE|L1	-47297	NR_046642	100874004		NR_046642		PPEF1-AS1	-	PPEF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28847	chr13	100258946	100259201	+	16.01814	NA	intron (NR_104592, intron 1 of 9)	CpG	155	NM_206808	171425	Hs.655642	NM_206808	HPRD:10838	CLYBL	CLB	citrate lyase beta like	protein-coding
19-PTNLD28-TUMOR_peak_33503	chr15	48677805	48678004	+	16.01814	NA	Intergenic	Intergenic	53539	NM_001948	1854	Hs.527980	NM_001948	HPRD:03165	DUT	dUTPase	deoxyuridine triphosphatase	protein-coding
19-PTNLD28-TUMOR_peak_108847	chrX	82068737	82069056	+	16.01814	NA	Intergenic	Intergenic	-694373	NM_000307	5456	Hs.2229	NM_000307	HPRD:02076	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_25226	chr12	70273036	70273384	+	16.01814	NA	Intergenic	Intergenic	100478	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_52889	chr2	56676225	56676397	+	16.01814	NA	Intergenic	Intergenic	-263406	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_39681	chr17	2121818	2122057	+	16.01814	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-14035	NR_110888	101927839	Hs.665648	NR_110888		LOC101927839	-	uncharacterized LOC101927839	ncRNA
19-PTNLD28-TUMOR_peak_80849	chr5	77787002	77787213	+	16.01814	NA	intron (NM_005779, intron 4 of 4)	intron (NM_005779, intron 4 of 4)	-130742	NR_105014	728769	Hs.586193	NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86789	chr6	33041417	33041558	+	16.01639	NA	promoter-TSS (NM_033554).2	promoter-TSS (NM_033554).2	-33	NM_033554	3113	Hs.347270	NM_033554	HPRD:00835	HLA-DPA1	DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_71939	chr3	156855284	156855678	+	16.01639	NA	Intergenic	Intergenic	-14690	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
19-PTNLD28-TUMOR_peak_84190	chr5	175241791	175242120	+	16.01582	NA	intron (NM_006650, intron 2 of 4)	MLT1K|LTR|ERVL-MaLR	18345	NM_006650	10814	Hs.193235	NM_006650	HPRD:09234	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
19-PTNLD28-TUMOR_peak_45594	chr18	45748669	45748820	+	16.01582	NA	Intergenic	Intergenic	-85064	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_1834	chr1	28487368	28487698	+	16.01243	NA	intron (NM_001164722, intron 1 of 1)	intron (NM_001164722, intron 1 of 1)	15922	NM_000952	5724	Hs.77542	NM_000952	HPRD:01422	PTAFR	PAFR	platelet-activating factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_81071	chr5	88178890	88179211	+	16.01243	NA	promoter-TSS (NR_109941)	promoter-TSS (NR_109941)	-97	NR_109941	101929423	Hs.130138	NR_104031		MEF2C-AS1	CTC-454M9.1	MEF2C antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28962	chr13	107031433	107031662	+	16.01243	NA	Intergenic	Intergenic	2636	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
19-PTNLD28-TUMOR_peak_40729	chr17	25735588	25735761	+	16.01243	NA	Intergenic	L3|LINE|CR1	-9357	NR_033892	440419	Hs.385755	NR_033892	ENSG00000266433	TBC1D3P5	-	TBC1 domain family, member 3 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_81339	chr5	99416616	99416858	+	16.01243	NA	Intergenic	L2b|LINE|L2	307221	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_27694	chr13	31144144	31144371	+	16.01243	NA	Intergenic	Intergenic	-47573	NM_005800	10208	Hs.533831	NM_005800	HPRD:09833	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
19-PTNLD28-TUMOR_peak_98414	chr8	41609841	41610171	+	16.01243	NA	intron (NM_020476, intron 2 of 41)	L2c|LINE|L2	45134	NM_020475	286	Hs.654438	NM_000037	HPRD:01693	ANK1	ANK|SPH1|SPH2	ankyrin 1, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_89516	chr6	134159027	134159413	+	16.01243	NA	intron (NR_027030, intron 2 of 2)	CpG	16935	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
19-PTNLD28-TUMOR_peak_52333	chr2	42252319	42252491	+	16.01243	NA	Intergenic	Intergenic	-22756	NM_138370	91461	Hs.408542	NM_138370	HPRD:18707	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_78918	chr5	10735806	10736047	+	16.01243	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	25461	NM_004394	1611	Hs.75189	NM_004394	HPRD:02977	DAP	-	death-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_39753	chr17	3658370	3658582	+	16.00877	NA	exon (NM_002208, exon 12 of 31)	exon (NM_002208, exon 12 of 31)	31279	NM_031965	83903	Hs.534059	NM_031965	HPRD:17083	GSG2	HASPIN	germ cell associated 2 (haspin)	protein-coding
19-PTNLD28-TUMOR_peak_71203	chr3	138830784	138830988	+	16.00877	NA	intron (NR_026783, intron 2 of 2)	intron (NR_026783, intron 2 of 2)	7859	NR_026783	60467	Hs.512673	NM_021812	HPRD:16559	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_33932	chr15	63767116	63767332	+	16.00877	NA	Intergenic	Intergenic	-29486	NR_046341	9960	Hs.458499	NM_006537		USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_68859	chr3	66813723	66814014	+	16.00877	NA	Intergenic	Intergenic	-234859	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_108681	chrX	70751993	70752253	+	16.00877	NA	promoter-TSS (NM_181672)	promoter-TSS (NM_181672)	-789	NM_181673	8473	Hs.405410	NM_003605	HPRD:02222	OGT	HRNT1|O-GLCNAC	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
19-PTNLD28-TUMOR_peak_43532	chr17	74194888	74195069	+	16.00877	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	41412	NM_052916	114804	Hs.500643	NM_052916	HPRD:15259	RNF157	-	ring finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_14012	chr10	70939315	70939491	+	16.00687	NA	promoter-TSS (NM_003171)	promoter-TSS (NM_003171)	-590	NM_003171	6832	Hs.106469	NM_003171	HPRD:05493	SUPV3L1	SUV3	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_21156	chr11	111895443	111896325	+	16.00687	NA	5' UTR (NM_001931, exon 1 of 14)	5' UTR (NM_001931, exon 1 of 14)	346	NM_001931	1737	Hs.335551	NM_001931	HPRD:10578	DLAT	DLTA|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_45509	chr18	43998877	43999163	+	16.00586	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	84833	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_86370	chr6	28984460	28984868	+	16.00586	NA	Intergenic	CpG	-11627	NM_001010877	282890	Hs.148218	NM_001010877	HPRD:18325	ZNF311	zf31	zinc finger protein 311	protein-coding
19-PTNLD28-TUMOR_peak_101873	chr9	304258	304435	+	16.00586	NA	intron (NM_001193536, intron 3 of 46)	intron (NM_001193536, intron 3 of 46)	31298	NM_001193536	81704	Hs.132599	NM_203447	HPRD:10920	DOCK8	HEL-205|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
19-PTNLD28-TUMOR_peak_59547	chr20	3216671	3216844	+	16.00586	NA	intron (NM_001174090, intron 2 of 19)	intron (NM_001174090, intron 2 of 19)	1616	NM_032034	83959	Hs.105607	NM_032034	HPRD:15392	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	solute carrier family 4, sodium borate transporter, member 11	protein-coding
19-PTNLD28-TUMOR_peak_6125	chr1	143645717	143645897	+	16.00586	NA	Intergenic	Intergenic	-27114	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_43141	chr17	66596364	66596583	+	16.00249	NA	exon (NM_017565, exon 1 of 11)	exon (NM_017565, exon 1 of 11)	622	NM_001243746	54757	Hs.268874	NM_017565		FAM20A	AI1G|AIGFS|FP2747	family with sequence similarity 20, member A	protein-coding
19-PTNLD28-TUMOR_peak_73041	chr3	187690839	187691042	+	16.00249	NA	Intergenic	Intergenic	-180721	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_61720	chr20	48381720	48381925	+	16.00209	NA	Intergenic	Intergenic	-47428	NR_048538	23315	Hs.444202	NM_015266	HPRD:18062	SLC9A8	NHE-8|NHE8	solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8	protein-coding
19-PTNLD28-TUMOR_peak_6800	chr1	151566776	151566884	+	16.00141	NA	Intergenic	Intergenic	-17832	NM_030918	81609	Hs.192326	NM_030918	HPRD:11591	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
19-PTNLD28-TUMOR_peak_30402	chr14	55117133	55117292	+	15.98979	NA	intron (NM_001161576, intron 1 of 10)	intron (NM_001161576, intron 1 of 10)	82882	NM_015589	23034	Hs.98259	NM_015589	HPRD:10209	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_41933	chr17	45307515	45307739	+	15.98979	NA	Intergenic	MIR3|SINE|MIR	20913	NM_002476	4635	Hs.463300	NM_002476	HPRD:01176	MYL4	ALC1|AMLC|GT1	myosin, light chain 4, alkali; atrial, embryonic	protein-coding
19-PTNLD28-TUMOR_peak_23055	chr12	11802515	11802705	+	15.97470	NA	promoter-TSS (NM_001987)	promoter-TSS (NM_001987)	-178	NM_001987	2120	Hs.504765	NM_001987	HPRD:15976	ETV6	TEL|TEL/ABL	ets variant 6	protein-coding
19-PTNLD28-TUMOR_peak_68065	chr3	48732033	48732234	+	15.97470	NA	non-coding (NR_027437, exon 3 of 4)	non-coding (NR_027437, exon 3 of 4)	-8767	NM_184231	51517	Hs.655006	NM_016453	HPRD:09450	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
19-PTNLD28-TUMOR_peak_44304	chr18	3012905	3013481	+	15.97470	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-1248	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_90717	chr7	191520	191682	+	15.97270	NA	Intergenic	Intergenic	-1368	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	family with sequence similarity 20, member C	protein-coding
19-PTNLD28-TUMOR_peak_16475	chr11	444535	444710	+	15.97270	NA	Intergenic	Intergenic	-2611	NM_001012302	338440	Hs.501622	NM_001012302	HPRD:18214	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
19-PTNLD28-TUMOR_peak_74495	chr4	10117559	10117959	+	15.97264	NA	exon (NM_017491, exon 2 of 15)	exon (NM_017491, exon 2 of 15)	814	NM_005112	9948	Hs.128548	NM_005112	HPRD:09199	WDR1	AIP1|HEL-S-52|NORI-1	WD repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_16502	chr11	702950	703114	+	15.97264	NA	exon (NM_174940, exon 5 of 5)	exon (NM_174940, exon 5 of 5)	-3088	NM_022772	64787	Hs.55016	NM_022772	HPRD:10940	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
19-PTNLD28-TUMOR_peak_87241	chr6	37788112	37788291	+	15.97264	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	894	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_6289	chr1	145299719	145299883	+	15.97126	NA	exon (NM_001039703, exon 6 of 86)	exon (NM_001039703, exon 6 of 86)	6430	NM_001039703	100132406	Hs.714127	NM_001039703	ENSG00000163386	NBPF10	AB6|AG1|NBPF9	neuroblastoma breakpoint family, member 10	protein-coding
19-PTNLD28-TUMOR_peak_7245	chr1	155915756	155916270	+	15.97126	NA	TTS (NM_001162383)	TTS (NM_001162383)	4533	NM_181885	339403	Hs.449914	NM_181885	HPRD:16421	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin/insulin-like family peptide receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_3671	chr1	55266873	55267104	+	15.97047	NA	promoter-TSS (NM_017904)	promoter-TSS (NM_017904)	-47	NM_017904	55001	Hs.16230	NM_017904	HPRD:07932	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
19-PTNLD28-TUMOR_peak_95237	chr7	129599388	129599606	+	15.96898	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6697	NM_003344	7328	Hs.643548	NM_003344	HPRD:03052	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
19-PTNLD28-TUMOR_peak_37725	chr16	49891056	49891209	+	15.96783	NA	intron (NM_001271620, intron 1 of 7)	CpG	698	NM_001271620	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_65877	chr22	44982205	44982417	+	15.96783	NA	Intergenic	Intergenic	17091	NR_028409	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_92092	chr7	39467992	39468147	+	15.96741	NA	intron (NM_001166018, intron 7 of 10)	intron (NM_001166018, intron 7 of 10)	-22124	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109910	chrX	153140924	153141052	+	15.96741	NA	intron (NM_024003, intron 1 of 26)	intron (NM_024003, intron 1 of 26)	411	NM_024003	3897	Hs.522818	NM_000425	HPRD:02394	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_49283	chr19	44302639	44303289	+	15.96741	NA	exon (NM_001031749, exon 3 of 5)	exon (NM_001031749, exon 3 of 5)	1217	NM_001288763	284348	Hs.44289	NM_182573	HPRD:08084	LYPD5	PRO4356	LY6/PLAUR domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_83902	chr5	170970625	170970860	+	15.96741	NA	Intergenic	Intergenic	124075	NM_003862	8817	Hs.87191	NM_003862	HPRD:04766	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
19-PTNLD28-TUMOR_peak_29843	chr14	34595829	34596133	+	15.96741	NA	Intergenic	Intergenic	-175697	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_56015	chr2	138741131	138741578	+	15.96741	NA	intron (NM_006895, intron 2 of 5)	MER34A1|LTR|ERV1	19546	NM_001024075	3176	Hs.42151	NM_006895	HPRD:05575	HNMT	HMT|HNMT-S1|HNMT-S2	histamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_34831	chr15	82287880	82288063	+	15.96741	NA	Intergenic	L1PA2|LINE|L1	50513	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_80457	chr5	68904857	68905222	+	15.96738	NA	Intergenic	Intergenic	23989	NR_027439	100272216	Hs.662074	NR_027439		LOC100272216	-	uncharacterized LOC100272216	ncRNA
19-PTNLD28-TUMOR_peak_103551	chr9	69148517	69148700	+	15.96738	NA	promoter-TSS (NR_002836)	promoter-TSS (NR_002836)	-754	NR_002836	595135	Hs.571593	NR_002836	ENSG00000227558	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_71884	chr3	156002206	156002351	+	15.96738	NA	intron (NM_003471, intron 1 of 13)	L1HS|LINE|L1	-6498	NM_172159	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_59453	chr20	1713317	1713473	+	15.96738	NA	Intergenic	HERVH-int|LTR|ERV1	46997	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7325	chr1	156553953	156554125	+	15.96738	NA	intron (NM_001105669, intron 6 of 10)	intron (NM_001105669, intron 6 of 10)	4520	NM_001105669	164118	Hs.447851	NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
19-PTNLD28-TUMOR_peak_9165	chr1	200982330	200982553	+	15.96738	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	10387	NM_001252103	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19-PTNLD28-TUMOR_peak_40336	chr17	16440250	16440410	+	15.96738	NA	Intergenic	Intergenic	32190	NM_020653	57336	Hs.99724	NM_020653		ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
19-PTNLD28-TUMOR_peak_83429	chr5	154908923	154909332	+	15.96738	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	515867	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
19-PTNLD28-TUMOR_peak_40184	chr17	10017821	10018308	+	15.96738	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-78000	NM_201432	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_2783	chr1	41329392	41329592	+	15.95704	NA	Intergenic	Intergenic	-1474	NM_133467	163732	Hs.355820	NM_133467	HPRD:06011	CITED4	-	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding
19-PTNLD28-TUMOR_peak_93796	chr7	86948527	86948661	+	15.95278	NA	Intergenic	L1P3|LINE|L1	26214	NR_015381	11257	Hs.274329	NM_007233	HPRD:10276	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1	TP53 target 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_37507	chr16	33798561	33798748	+	15.95278	NA	Intergenic	Intergenic	163849	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
19-PTNLD28-TUMOR_peak_79909	chr5	54456822	54456988	+	15.95278	NA	exon (NM_001008397, exon 2 of 3)	exon (NM_001008397, exon 2 of 3)	921	NM_001008397	493869	Hs.289044	NM_001008397		GPX8	EPLA847|GPx-8|GSHPx-8|UNQ847	glutathione peroxidase 8 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_47030	chr19	8223511	8223616	+	15.95278	NA	Intergenic	Intergenic	-11178	NM_032447	84467	Hs.370362	NM_032447	HPRD:10538	FBN3	-	fibrillin 3	protein-coding
19-PTNLD28-TUMOR_peak_63505	chr21	39723934	39724118	+	15.95278	NA	Intergenic	Intergenic	-6028	NR_110545	102724678	Hs.635675	NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA
19-PTNLD28-TUMOR_peak_83080	chr5	148442095	148442358	+	15.95278	NA	promoter-TSS (NR_122044)	promoter-TSS (NR_122044)	511	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_22428	chr12	1605417	1605987	+	15.95076	NA	TTS (NM_178039)	TTS (NM_178039)	-3955	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
19-PTNLD28-TUMOR_peak_84889	chr6	3403497	3403715	+	15.95076	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	41641	NR_104448	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_91638	chr7	23752928	23753091	+	15.95076	NA	intron (NR_048542, intron 3 of 23)	Tigger3b|DNA|TcMar-Tigger	3064	NM_001260504	56164	Hs.309767	NM_031414	HPRD:10427	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
19-PTNLD28-TUMOR_peak_71695	chr3	150165449	150165844	+	15.95076	NA	intron (NM_014779, intron 2 of 3)	intron (NM_014779, intron 2 of 3)	38858	NM_014779	9819	Hs.722470	NM_014779	HPRD:11101	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_84398	chr5	177714782	177715100	+	15.94537	NA	intron (NM_173465, intron 5 of 28)	intron (NM_173465, intron 5 of 28)	-55118	NR_103509	85007	Hs.248746	NM_153373	HPRD:18482	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_37960	chr16	56391869	56392232	+	15.94493	NA	TTS (NM_020988)	TTS (NM_020988)	67400	NM_001144	267	Hs.295137	NM_001144	HPRD:09130	AMFR	GP78|RNF45	autocrine motility factor receptor, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_43970	chr17	79451367	79451575	+	15.94493	NA	Intergenic	CpG	28421	NR_037688	71	Hs.514581	NM_001614	HPRD:00017	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_46406	chr18	77337927	77338119	+	15.94420	NA	Intergenic	Intergenic	-101778	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_13437	chr10	48266857	48267151	+	15.94113	NA	intron (NM_001271702, intron 9 of 11)	intron (NM_001271702, intron 9 of 11)	11800	NM_001040084	653145	Hs.535306	NM_001040084	ENSG00000165390	ANXA8	ANX8	annexin A8	protein-coding
19-PTNLD28-TUMOR_peak_63872	chr21	45059820	45059998	+	15.94109	NA	intron (NM_007031, intron 4 of 8)	L1MD2|LINE|L1	19465	NM_007031	11077	Hs.406157	NM_007031	HPRD:05186	HSF2BP	-	heat shock transcription factor 2 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_95193	chr7	129007523	129007670	+	15.94109	NA	promoter-TSS (NM_001130723)	promoter-TSS (NM_001130723)	-368	NM_001130723	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_88085	chr6	54826702	54826965	+	15.94109	NA	Intergenic	L1PA3|LINE|L1	115264	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_99082	chr8	68305814	68305944	+	15.94109	NA	Intergenic	AluJr|SINE|Alu	-49967	NM_006421	10565	Hs.656902	NM_006421	HPRD:09163	ARFGEF1	ARFGEP1|BIG1|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_89337	chr6	125126080	125126288	+	15.94109	NA	intron (NM_001300740, intron 4 of 5)	L1PA3|LINE|L1	-157507	NM_001286398	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_60053	chr20	18812596	18812777	+	15.94109	NA	Intergenic	Intergenic	-1847	NM_001242671	100128496	Hs.664484	NM_001242671	ENSG00000149443	C20orf78	dJ1068E13.1	chromosome 20 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_53257	chr2	68656788	68656923	+	15.93801	NA	Intergenic	MER1B|DNA|hAT-Charlie	37535	NM_001024680	554251	Hs.164117	NM_001024680		FBXO48	-	F-box protein 48	protein-coding
19-PTNLD28-TUMOR_peak_70263	chr3	123698679	123698858	+	15.93801	NA	intron (NM_017578, intron 3 of 6)	intron (NM_017578, intron 3 of 6)	11431	NM_017578	54763	Hs.567516	NM_017578	HPRD:15269	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
19-PTNLD28-TUMOR_peak_104380	chr9	90477568	90477726	+	15.93801	NA	Intergenic	Intergenic	-3676	NR_040117	392364	Hs.689633	NR_040117		LOC392364	-	nuclear pore associated protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1167	chr1	17828889	17829215	+	15.93801	NA	Intergenic	Intergenic	-37278	NM_018125	55160	Hs.443460	NM_018125	HPRD:07679	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
19-PTNLD28-TUMOR_peak_30646	chr14	61655678	61656203	+	15.93801	NA	Intergenic	Intergenic	92590	NM_001017970	161291	Hs.146180	NM_001017970	HPRD:18567	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
19-PTNLD28-TUMOR_peak_98603	chr8	48044512	48044659	+	15.93801	NA	Intergenic	(CAAGC)n|Simple_repeat|Simple_repeat	-56345	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_20214	chr11	77589374	77589543	+	15.93801	NA	TTS (NM_033547)	TTS (NM_033547)	57250	NM_024684	28971	Hs.745040	NM_024684	HPRD:17924	AAMDC	C11orf67|CK067	adipogenesis associated, Mth938 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_58926	chr2	234620201	234620309	+	15.93801	NA	intron (NM_205862, intron 2 of 5)	intron (NM_205862, intron 2 of 5)	-1383	NM_019078	54579	Hs.554822	NM_019078	HPRD:07335	UGT1A5	UDPGT|UDPGT 1-5|UGT1E	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding
19-PTNLD28-TUMOR_peak_70898	chr3	132988606	132988810	+	15.93801	NA	intron (NM_001282865, intron 2 of 3)	intron (NM_001282865, intron 2 of 3)	-12743	NR_110812	101927455	Hs.570550	NR_110812	ENSG00000251011	TMEM108-AS1	-	TMEM108 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83514	chr5	157602045	157602199	+	15.93801	NA	Intergenic	Intergenic	234659	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_88274	chr6	72741777	72742103	+	15.93801	NA	intron (NM_014989, intron 2 of 33)	intron (NM_014989, intron 2 of 33)	145534	NM_014989	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_105398	chr9	113431781	113431983	+	15.93801	NA	intron (NM_001166281, intron 1 of 11)	intron (NM_001166281, intron 1 of 11)	831	NM_001166280	4593	Hs.521653	NM_005592	HPRD:03190	MUSK	-	muscle, skeletal, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_57823	chr2	202285194	202285537	+	15.93801	NA	5' UTR (NM_015049, exon 2 of 16)	5' UTR (NM_015049, exon 2 of 16)	30954	NM_015049	66008	Hs.152774	NM_015049	HPRD:09547	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking protein, kinesin binding 2	protein-coding
19-PTNLD28-TUMOR_peak_18153	chr11	39563232	39563774	+	15.93801	NA	Intergenic	L1M3b|LINE|L1	751177	NR_047674	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_88390	chr6	76044435	76044634	+	15.93801	NA	intron (NM_001300866, intron 4 of 6)	intron (NM_001300866, intron 4 of 6)	49804	NR_040081	100506804	Hs.743708	NR_040081		LOC100506804	-	uncharacterized LOC100506804	ncRNA
19-PTNLD28-TUMOR_peak_19995	chr11	74030324	74030514	+	15.93801	NA	intron (NR_120556, intron 3 of 6)	intron (NR_120556, intron 3 of 6)	-7698	NM_001288748	283208	Hs.660541	NM_182904	HPRD:16413	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
19-PTNLD28-TUMOR_peak_36718	chr16	21095046	21095418	+	15.93801	NA	intron (NM_017539, intron 19 of 61)	intron (NM_017539, intron 19 of 61)	-74680	NM_020422	57146	Hs.258212	NM_020422	HPRD:17428	TMEM159	PROMETHIN	transmembrane protein 159	protein-coding
19-PTNLD28-TUMOR_peak_68645	chr3	59466241	59466375	+	15.93801	NA	Intergenic	Intergenic	-430593	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_40883	chr17	28338993	28339146	+	15.93801	NA	intron (NR_026738, intron 7 of 15)	LTR13|LTR|ERVK	70446	NR_026738	374786	Hs.662411	NM_198529	HPRD:13528	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_77074	chr4	130067106	130067220	+	15.93801	NA	Intergenic	AluY|SINE|Alu	49881	NM_001099783	132321	Hs.567679	NM_173487	HPRD:14049	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_15320	chr10	103929306	103929694	+	15.93801	NA	Intergenic	AluY|SINE|Alu	17567	NM_001284389	9221	Hs.523238	NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_18927	chr11	61726629	61726780	+	15.93796	NA	intron (NM_001300786, intron 6 of 8)	intron (NM_001300786, intron 6 of 8)	8428	NM_002032	2495	Hs.524910	NM_002032	HPRD:00615	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin, heavy polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_7210	chr1	155531661	155531828	+	15.93401	NA	promoter-TSS (NR_027023)	promoter-TSS (NR_027023)	-28	NR_027023	645676	Hs.568693	NR_027023	ENSG00000235919	ASH1L-AS1	-	ASH1L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63388	chr21	37376829	37376999	+	15.93375	NA	promoter-TSS (NR_110419)	promoter-TSS (NR_110419)	51	NR_110418	101928269	Hs.589909	NR_110418	ENSG00000159216	LOC101928269	-	uncharacterized LOC101928269	ncRNA
19-PTNLD28-TUMOR_peak_20804	chr11	100558623	100558806	+	15.93375	NA	intron (NM_152432, intron 1 of 23)	intron (NM_152432, intron 1 of 23)	307	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_8043	chr1	168256501	168256660	+	15.93016	NA	intron (NM_005149, intron 1 of 7)	L2a|LINE|L2	6302	NM_005149	9095	Hs.716656	NM_005149	HPRD:05214	TBX19	TBS19|TPIT|dJ747L4.1	T-box 19	protein-coding
19-PTNLD28-TUMOR_peak_49171	chr19	41933117	41933489	+	15.92974	NA	5' UTR (NM_198540, exon 2 of 3)	5' UTR (NM_198540, exon 2 of 3)	1332	NM_198540	374907	Hs.441681	NM_198540	HPRD:12510	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_98812	chr8	55335036	55335190	+	15.92974	NA	Intergenic	Intergenic	-35382	NM_022454	64321	Hs.98367	NM_022454	HPRD:18085	SOX17	VUR3	SRY (sex determining region Y)-box 17	protein-coding
19-PTNLD28-TUMOR_peak_64816	chr22	25392468	25392633	+	15.92974	NA	Intergenic	LTR16A1|LTR|ERVL	-31391	NM_001145206	85379	Hs.419171	NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
19-PTNLD28-TUMOR_peak_16578	chr11	1553214	1553461	+	15.91911	NA	Intergenic	Intergenic	39813	NM_004420	1850	Hs.41688	NM_004420	HPRD:03617	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
19-PTNLD28-TUMOR_peak_92699	chr7	56242319	56242557	+	15.91911	NA	Intergenic	CpG	-58348	NM_001145712	389493	Hs.177948	NM_001145712	ENSG00000185290	NUPR1L	-	nuclear protein, transcriptional regulator, 1-like	protein-coding
19-PTNLD28-TUMOR_peak_86563	chr6	31036742	31036875	+	15.91911	NA	Intergenic	Intergenic	15581	NR_003948	285834	Hs.207528	NR_003948	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22	ncRNA
19-PTNLD28-TUMOR_peak_95384	chr7	131345309	131345661	+	15.91911	NA	Intergenic	AluJr|SINE|Alu	-104109	NM_001018111	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_91095	chr7	5596338	5596577	+	15.91857	NA	Intergenic	CpG	-26225	NM_001101	60	Hs.520640	NM_001101	HPRD:00032	ACTB	BRWS1|PS1TP5BP1	actin, beta	protein-coding
19-PTNLD28-TUMOR_peak_50240	chr19	54369516	54369726	+	15.91703	NA	5' UTR (NM_001020820, exon 1 of 3)	5' UTR (NM_001020820, exon 1 of 3)	209	NM_001290188	91663	Hs.380906	NM_138373	HPRD:14792	MYADM	SB135	myeloid-associated differentiation marker	protein-coding
19-PTNLD28-TUMOR_peak_382	chr1	6500297	6500554	+	15.91553	NA	exon (NM_031475, exon 3 of 13)	exon (NM_031475, exon 3 of 13)	-10469	NR_036218	100422975		NR_036218	miRBase:MI0015864	MIR4252	-	microRNA 4252	ncRNA
19-PTNLD28-TUMOR_peak_41871	chr17	44269991	44270250	+	15.91184	NA	promoter-TSS (NR_034172)	promoter-TSS (NR_034172)	46	NM_001193466	284058	Hs.648744	NM_015443	HPRD:11254	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_33950	chr15	64265047	64265393	+	15.90368	NA	intron (NM_014326, intron 3 of 11)	MLT1A0-int|LTR|ERVL-MaLR	44747	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
19-PTNLD28-TUMOR_peak_23706	chr12	33072535	33072760	+	15.90368	NA	Intergenic	Intergenic	-22867	NM_001005242	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_39600	chr17	1090432	1090705	+	15.90368	NA	promoter-TSS (NM_001159746)	promoter-TSS (NM_001159746)	48	NM_001159746	29	Hs.159306	NM_001092	HPRD:02649	ABR	MDB	active BCR-related	protein-coding
19-PTNLD28-TUMOR_peak_77031	chr4	129149302	129149581	+	15.90368	NA	Intergenic	Intergenic	60543	NM_006320	10424	Hs.507910	NM_006320	HPRD:09665	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
19-PTNLD28-TUMOR_peak_85973	chr6	24595742	24596019	+	15.90368	NA	intron (NM_001168376, intron 2 of 19)	intron (NM_001168376, intron 2 of 19)	-12425	NM_001252328	9856	Hs.26441	NM_014809	HPRD:18713	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
19-PTNLD28-TUMOR_peak_60868	chr20	35898147	35898365	+	15.90368	NA	Intergenic	Intergenic	-12957	NM_021081	2691	Hs.37023	NM_021081	HPRD:11752	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
19-PTNLD28-TUMOR_peak_59140	chr2	239129551	239130133	+	15.90368	NA	Intergenic	MER52C|LTR|ERV1	10476	NR_026925	151174	Hs.424165	NR_026925	ENSG00000186235	LOC151174	-	uncharacterized LOC151174	ncRNA
19-PTNLD28-TUMOR_peak_7968	chr1	167132201	167132365	+	15.90368	NA	Intergenic	Intergenic	32759	NR_110811	101928484	Hs.568496	NR_110811		LINC01363	RBSG4	long intergenic non-protein coding RNA 1363	ncRNA
19-PTNLD28-TUMOR_peak_25381	chr12	76713764	76713999	+	15.90368	NA	Intergenic	L1PA3|LINE|L1	28341	NM_024685	79738	Hs.96322	NM_024685	HPRD:08036	BBS10	C12orf58	Bardet-Biedl syndrome 10	protein-coding
19-PTNLD28-TUMOR_peak_33194	chr15	40886008	40886216	+	15.90045	NA	promoter-TSS (NM_144508)	promoter-TSS (NM_144508)	-335	NM_170589	57082	Hs.181855	NM_144508	HPRD:10634	CASC5	AF15Q14|CT29|D40|KNL1|PPP1R55|Spc7|hKNL-1|hSpc105	cancer susceptibility candidate 5	protein-coding
19-PTNLD28-TUMOR_peak_54984	chr2	112655538	112655707	+	15.90045	NA	promoter-TSS (NM_006343)	promoter-TSS (NM_006343)	-569	NM_006343	10461	Hs.306178	NM_006343	HPRD:05269	MERTK	MER|RP38|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_87124	chr6	36694441	36694723	+	15.90045	NA	intron (NM_001257357, intron 10 of 13)	AluSz|SINE|Alu	28954	NM_001257357	401258	Hs.485258	NM_207498		RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_83821	chr5	169407478	169407906	+	15.90045	NA	promoter-TSS (NM_001129891)	promoter-TSS (NM_001129891)	52	NM_001129891	100131897	Hs.721917	NM_001129891	ENSG00000204767	FAM196B	C5orf57	family with sequence similarity 196, member B	protein-coding
19-PTNLD28-TUMOR_peak_24332	chr12	52615683	52616167	+	15.90045	NA	intron (NR_027358, intron 4 of 4)	LTR50|LTR|ERVL	-11029	NM_005556	3855	Hs.411501	NM_005556	HPRD:01014	KRT7	CK7|K2C7|K7|SCL	keratin 7	protein-coding
19-PTNLD28-TUMOR_peak_41150	chr17	34948139	34948626	+	15.90045	NA	5' UTR (NM_024308, exon 1 of 7)	5' UTR (NM_024308, exon 1 of 7)	156	NM_024308	79154	Hs.462859	NM_024308	HPRD:08331	DHRS11	ARPG836|SDR24C1	dehydrogenase/reductase (SDR family) member 11	protein-coding
19-PTNLD28-TUMOR_peak_14042	chr10	71206456	71206624	+	15.89397	NA	Intergenic	L2b|LINE|L2	-4686	NM_012339	23555	Hs.499941	NM_012339	HPRD:15511	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
19-PTNLD28-TUMOR_peak_79015	chr5	14186319	14186448	+	15.89337	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	42554	NM_007118	7204	Hs.130031	NM_007118	HPRD:03537	TRIO	ARHGEF23|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_69197	chr3	79068510	79068852	+	15.89337	NA	promoter-TSS (NM_133631)	promoter-TSS (NM_133631)	-72	NM_133631	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_36422	chr16	14464128	14464363	+	15.89337	NA	Intergenic	Intergenic	61103	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_24838	chr12	58819311	58819771	+	15.89337	NA	Intergenic	Intergenic	355957	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_105454	chr9	114823534	114823806	+	15.89337	NA	intron (NM_001282640, intron 13 of 17)	intron (NM_001282640, intron 13 of 17)	113907	NM_022486	64420	Hs.494827	NM_022486	HPRD:15452	SUSD1	-	sushi domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43124	chr17	66432242	66432388	+	15.89337	NA	intron (NM_017983, intron 5 of 12)	intron (NM_017983, intron 5 of 12)	-11626	NR_030365	693220		NR_030365		MIR635	MIRN635|hsa-mir-635	microRNA 635	ncRNA
19-PTNLD28-TUMOR_peak_107747	chrX	20380063	20380232	+	15.89337	NA	Intergenic	Intergenic	-95397	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_77703	chr4	154514923	154515083	+	15.89337	NA	exon (NM_001131007, exon 19 of 35)	exon (NM_001131007, exon 19 of 35)	-90438	NM_003264	7097	Hs.519033	NM_003264		TLR2	CD282|TIL4	toll-like receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_106643	chr9	137298357	137298500	+	15.89256	NA	promoter-TSS (NM_001291921)	promoter-TSS (NM_001291921)	0	NM_001291921	6256	Hs.590886	NM_002957		RXRA	NR2B1	retinoid X receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_69894	chr3	113553958	113554114	+	15.89256	NA	Intergenic	L2|LINE|L2	-3645	NM_017577	54762	Hs.24583	NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
19-PTNLD28-TUMOR_peak_7041	chr1	154148948	154149115	+	15.89256	NA	intron (NM_152263, intron 2 of 9)	intron (NM_152263, intron 2 of 9)	1666	NM_001278191	7170	Hs.535581	NM_152263	HPRD:01840	TPM3	CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
19-PTNLD28-TUMOR_peak_9681	chr1	205905095	205905251	+	15.88086	NA	intron (NM_134325, intron 1 of 21)	intron (NM_134325, intron 1 of 21)	7415	NM_134325	115019	Hs.164073	NM_052934	HPRD:12242	SLC26A9	-	solute carrier family 26 (anion exchanger), member 9	protein-coding
19-PTNLD28-TUMOR_peak_26148	chr12	108957396	108957532	+	15.87325	NA	intron (NM_001301141, intron 1 of 5)	intron (NM_001301141, intron 1 of 5)	2225	NM_001301141	23479	Hs.615131	NM_014301	HPRD:14828	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
19-PTNLD28-TUMOR_peak_12362	chr10	22726188	22726552	+	15.87101	NA	non-coding (NR_036533, exon 1 of 1)	non-coding (NR_036533, exon 1 of 1)	488	NR_036533	100499489	Hs.7444	NR_036533		LOC100499489	-	uncharacterized LOC100499489	ncRNA
19-PTNLD28-TUMOR_peak_80450	chr5	68817083	68817264	+	15.87101	NA	intron (NM_001205254, intron 4 of 8)	L1ME3C|LINE|L1	17169	NM_001205255	100506658	Hs.592605	NM_002538	ENSG00000197822	OCLN	BLCPMG|PPP1R115	occludin	protein-coding
19-PTNLD28-TUMOR_peak_6465	chr1	147369230	147369524	+	15.87101	NA	Intergenic	Intergenic	-5569	NM_005267	2703	Hs.632441	NM_005267	HPRD:02939	GJA8	CAE|CAE1|CTRCT1|CX50|CZP1|MP70	gap junction protein, alpha 8, 50kDa	protein-coding
19-PTNLD28-TUMOR_peak_63754	chr21	43782881	43783321	+	15.87101	NA	intron (NM_003225, intron 2 of 2)	intron (NM_003225, intron 2 of 2)	3543	NM_003225	7031	Hs.162807	NM_003225	HPRD:00219	TFF1	BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2	trefoil factor 1	protein-coding
19-PTNLD28-TUMOR_peak_563	chr1	9065259	9065424	+	15.87031	NA	intron (NM_207420, intron 10 of 11)	intron (NM_207420, intron 10 of 11)	21063	NM_207420	155184	Hs.531239	NM_207420	HPRD:15365	SLC2A7	GLUT7	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_101190	chr8	135121845	135122036	+	15.87031	NA	Intergenic	AluJr|SINE|Alu	223201	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_26948	chr12	124534061	124534299	+	15.87031	NA	intron (NM_001204299, intron 2 of 4)	L2b|LINE|L2	76418	NM_001204299	100533183	Hs.432901	NM_001204299	ENSG00000255906	ZNF664-FAM101A	-	protein FAM101A	protein-coding
19-PTNLD28-TUMOR_peak_9131	chr1	200457739	200458055	+	15.87031	NA	Intergenic	Intergenic	-78711	NM_012482	23528	Hs.59757	NM_012482	HPRD:11702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
19-PTNLD28-TUMOR_peak_97663	chr8	23183445	23183616	+	15.87031	NA	intron (NM_002318, intron 6 of 13)	MIR3|SINE|MIR	-10191	NR_038323	100507156	Hs.661130	NR_038323	ENSG00000253837	LOC100507156	-	uncharacterized LOC100507156	ncRNA
19-PTNLD28-TUMOR_peak_26616	chr12	120444459	120444709	+	15.87031	NA	intron (NM_207311, intron 2 of 8)	L2a|LINE|L2	16936	NM_207311	92558	Hs.369763	NM_207311	HPRD:14292	CCDC64	BICDR-1|H_267D11.1	coiled-coil domain containing 64	protein-coding
19-PTNLD28-TUMOR_peak_103785	chr9	74061242	74061678	+	15.87031	NA	Intergenic	Intergenic	322340	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_24735	chr12	57234875	57235020	+	15.87031	NA	Intergenic	Intergenic	77945	NM_003725	8630	Hs.524513	NM_003725	HPRD:09431	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
19-PTNLD28-TUMOR_peak_61032	chr20	38153122	38153577	+	15.87031	NA	Intergenic	Intergenic	-299958	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_78874	chr5	10284233	10284351	+	15.86374	NA	intron (NM_138809, intron 4 of 5)	intron (NM_138809, intron 4 of 5)	23876	NM_138809	134147	Hs.192586	NM_138809		CMBL	JS-1	carboxymethylenebutenolidase homolog (Pseudomonas)	protein-coding
19-PTNLD28-TUMOR_peak_41478	chr17	39942191	39942612	+	15.86319	NA	intron (NM_002230, intron 1 of 13)	CpG	563	NM_002230	3728	Hs.514174	NM_002230	HPRD:01414	JUP	ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB	junction plakoglobin	protein-coding
19-PTNLD28-TUMOR_peak_71467	chr3	143772101	143772244	+	15.85824	NA	Intergenic	Intergenic	80005	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_102977	chr9	37215924	37216122	+	15.85824	NA	intron (NM_001289119, intron 2 of 8)	intron (NM_001289119, intron 2 of 8)	95428	NM_001289121	84186	Hs.654700	NM_032226	HPRD:15703	ZCCHC7	AIR1	zinc finger, CCHC domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_4028	chr1	63696468	63696670	+	15.85824	NA	intron (NR_038252, intron 4 of 11)	MLT1L|LTR|ERVL-MaLR	86332	NR_038252	199899	Hs.116210	NR_038252		LINC00466	-	long intergenic non-protein coding RNA 466	ncRNA
19-PTNLD28-TUMOR_peak_51795	chr2	28078427	28078686	+	15.85824	NA	intron (NM_001287580, intron 3 of 8)	intron (NM_001287580, intron 3 of 8)	34707	NM_001287580	64080	Hs.11916	NM_022128		RBKS	RBSK	ribokinase	protein-coding
19-PTNLD28-TUMOR_peak_32743	chr15	29314114	29314533	+	15.85824	NA	intron (NM_001130414, intron 2 of 12)	L1MA10|LINE|L1	100483	NM_001130414	321	Hs.618112	NM_005503	HPRD:04090	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_60220	chr20	23649157	23649432	+	15.85824	NA	Intergenic	Intergenic	20368	NM_001899	1472	Hs.654549	NM_001899	HPRD:00462	CST4	-	cystatin S	protein-coding
19-PTNLD28-TUMOR_peak_46346	chr18	74841143	74841402	+	15.85824	NA	intron (NM_001025101, intron 1 of 8)	intron (NM_001025101, intron 1 of 8)	3502	NM_001025100	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_12795	chr10	32034610	32034839	+	15.85824	NA	Intergenic	MamGyp-int|LTR|Gypsy	163130	NM_001270699	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_71506	chr3	145940547	145940780	+	15.85824	NA	intron (NM_020353, intron 1 of 8)	L2a|LINE|L2	27988	NM_001128305	57088	Hs.477869	NM_020353	HPRD:07401	PLSCR4	TRA1	phospholipid scramblase 4	protein-coding
19-PTNLD28-TUMOR_peak_98343	chr8	40049040	40049253	+	15.85824	NA	Intergenic	HAL1|LINE|L1	38159	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_13657	chr10	54068086	54068244	+	15.85824	NA	intron (NR_038277, intron 3 of 5)	intron (NR_038277, intron 3 of 5)	5723	NR_038277	100506939	Hs.584791	NR_038277		PRKG1-AS1	-	PRKG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97680	chr8	23329997	23330115	+	15.85824	NA	Intergenic	Intergenic	-14812	NM_001128930	9583	Hs.444389	NM_004901	HPRD:09618	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
19-PTNLD28-TUMOR_peak_62135	chr20	53266057	53266237	+	15.85824	NA	intron (NM_177959, intron 7 of 7)	intron (NM_177959, intron 7 of 7)	173890	NM_177959	55816	Hs.473133	NM_018431	HPRD:16317	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
19-PTNLD28-TUMOR_peak_69070	chr3	73468644	73468963	+	15.85824	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-101670	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_89343	chr6	125320343	125320574	+	15.85824	NA	intron (NR_104440, intron 2 of 6)	intron (NR_104440, intron 2 of 6)	15948	NR_104440	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_70855	chr3	131924517	131924719	+	15.85824	NA	Intergenic	Intergenic	-111593	NM_001099	55	Hs.433060	NM_001099	HPRD:01378	ACPP	5'-NT|ACP-3|ACP3	acid phosphatase, prostate	protein-coding
19-PTNLD28-TUMOR_peak_97458	chr8	20060823	20061010	+	15.85824	NA	intron (NM_001693, intron 1 of 13)	intron (NM_001693, intron 1 of 13)	6212	NM_001693	526	Hs.295917	NM_001693	HPRD:06088	ATP6V1B2	ATP6B1B2|ATP6B2|HO57|VATB|VPP3|Vma2	ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2	protein-coding
19-PTNLD28-TUMOR_peak_41920	chr17	45018287	45018417	+	15.85821	NA	3' UTR (NM_004287, exon 6 of 6)	3' UTR (NM_004287, exon 6 of 6)	17866	NM_004287	9570	Hs.463278	NM_004287	HPRD:04937	GOSR2	Bos1|EPM6|GS27	golgi SNAP receptor complex member 2	protein-coding
19-PTNLD28-TUMOR_peak_4315	chr1	70820063	70820244	+	15.85821	NA	promoter-TSS (NM_001036645)	promoter-TSS (NM_001036645)	264	NM_030816	81573	Hs.744989	NM_030816	HPRD:13176	ANKRD13C	dJ677H15.3	ankyrin repeat domain 13C	protein-coding
19-PTNLD28-TUMOR_peak_16004	chr10	123284747	123284949	+	15.85821	NA	intron (NR_073009, intron 4 of 16)	intron (NR_073009, intron 4 of 16)	68633	NM_001144913	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_40107	chr17	8382798	8383176	+	15.85645	NA	intron (NM_005964, intron 38 of 40)	intron (NM_005964, intron 38 of 40)	43817	NM_030808	81565	Hs.372123	NM_030808	HPRD:06340	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_3143	chr1	45478338	45478633	+	15.85335	NA	intron (NM_000374, intron 1 of 9)	intron (NM_000374, intron 1 of 9)	680	NR_036510	7389	Hs.78601	NM_000374	HPRD:01441	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_12736	chr10	30720395	30720613	+	15.85203	NA	Intergenic	Intergenic	-2446	NM_001244134	1326	Hs.432453	NM_005204	HPRD:01863	MAP3K8	COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_44957	chr18	21853671	21853842	+	15.85151	NA	intron (NM_080597, intron 15 of 27)	L2c|LINE|L2	-1560	NM_018030	114876	Hs.370725	NM_018030	HPRD:09472	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
19-PTNLD28-TUMOR_peak_86251	chr6	27720087	27720340	+	15.85151	NA	Intergenic	LTR41|LTR|ERVL	-9310	NR_038929	100131289	Hs.200573	NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
19-PTNLD28-TUMOR_peak_91144	chr7	6055455	6055715	+	15.85151	NA	intron (NM_006303, intron 2 of 3)	intron (NM_006303, intron 2 of 3)	6703	NM_006303	7965	Hs.301613	NM_006303	HPRD:02915	AIMP2	JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	protein-coding
19-PTNLD28-TUMOR_peak_78669	chr5	1420960	1421159	+	15.85151	NA	intron (NM_001044, intron 5 of 14)	intron (NM_001044, intron 5 of 14)	24484	NM_001044	6531	Hs.406	NM_001044	HPRD:00543	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 (neurotransmitter transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_105510	chr9	116065338	116065626	+	15.84849	NA	Intergenic	Intergenic	-4162	NM_145051	138065	Hs.729641	NM_145051	HPRD:10082	RNF183	-	ring finger protein 183	protein-coding
19-PTNLD28-TUMOR_peak_61979	chr20	51215726	51215916	+	15.84849	NA	Intergenic	L2|LINE|L2	-21556	NR_110038	101927700	Hs.434465	NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
19-PTNLD28-TUMOR_peak_20665	chr11	94837714	94837853	+	15.84171	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	14809	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59492	chr20	2188307	2188520	+	15.84080	NA	intron (NM_001287682, intron 1 of 1)	CpG	839	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
19-PTNLD28-TUMOR_peak_48643	chr19	35581514	35581641	+	15.84080	NA	intron (NR_024561, intron 1 of 3)	intron (NR_024561, intron 1 of 3)	15598	NR_024561	100128675	Hs.633989	NR_024561	ENSG00000227392	HPN-AS1	-	HPN antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90006	chr6	151007793	151007942	+	15.84080	NA	intron (NM_001029884, intron 2 of 16)	intron (NM_001029884, intron 2 of 16)	86868	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_34677	chr15	78236747	78237011	+	15.84080	NA	Intergenic	CpG	-17691	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96034	chr7	143018915	143019074	+	15.84080	NA	intron (NM_000083, intron 5 of 22)	intron (NM_000083, intron 5 of 22)	5775	NR_046453	1180	Hs.121483	NM_000083	HPRD:00320	CLCN1	CLC1	chloride channel, voltage-sensitive 1	protein-coding
19-PTNLD28-TUMOR_peak_107997	chrX	40327674	40327829	+	15.84080	NA	Intergenic	Intergenic	-112465	NM_005765	10159	Hs.495960	NM_005765	HPRD:06454	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_96299	chr7	150475925	150476107	+	15.84080	NA	Intergenic	Intergenic	21605	NM_001101314	28959	Hs.647090	NM_014020	HPRD:17443	TMEM176B	LR8	transmembrane protein 176B	protein-coding
19-PTNLD28-TUMOR_peak_37288	chr16	30908372	30908596	+	15.84080	NA	intron (NM_001142544, intron 1 of 2)	intron (NM_001142544, intron 1 of 2)	556	NM_001330	1489	Hs.483811	NM_001330	HPRD:02699	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
19-PTNLD28-TUMOR_peak_95546	chr7	135011513	135011666	+	15.84080	NA	Intergenic	Intergenic	94858	NM_182489	346673	Hs.592279	NM_182489	HPRD:18123	STRA8	-	stimulated by retinoic acid 8	protein-coding
19-PTNLD28-TUMOR_peak_86327	chr6	28565074	28565266	+	15.84080	NA	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-10058	NM_052923	114821	Hs.176980	NM_052923	HPRD:11720	ZBED9	Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	zinc finger, BED-type containing 9	protein-coding
19-PTNLD28-TUMOR_peak_1951	chr1	30404465	30404893	+	15.83643	NA	Intergenic	Intergenic	105780	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_70038	chr3	119076155	119076315	+	15.83643	NA	intron (NM_020754, intron 1 of 11)	L2b|LINE|L2	-34628	NR_046748	100874246	Hs.607097	NR_046748		ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109860	chrX	152599857	152600066	+	15.83643	NA	intron (NM_001080485, intron 1 of 4)	CpG	348	NM_001080485	10838	Hs.348963	NM_020636	ENSG00000063587	ZNF275	-	zinc finger protein 275	protein-coding
19-PTNLD28-TUMOR_peak_103079	chr9	38838365	38838601	+	15.83643	NA	Intergenic	Intergenic	217398	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_1196	chr1	19239695	19239904	+	15.83643	NA	intron (NM_001136265, intron 5 of 8)	intron (NM_001136265, intron 5 of 8)	-10506	NM_003748	8659	Hs.77448	NM_003748	HPRD:06009	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_83185	chr5	149699769	149700052	+	15.83205	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-17385	NM_001012301	340075	Hs.591252	NM_001012301	HPRD:16510	ARSI	SPG66	arylsulfatase family, member I	protein-coding
19-PTNLD28-TUMOR_peak_71904	chr3	156351282	156351467	+	15.82999	NA	Intergenic	Intergenic	-40831	NM_015508	25976	Hs.744050	NM_015508	HPRD:18192	TIPARP	ARTD14|PARP7|pART14	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
19-PTNLD28-TUMOR_peak_6008	chr1	120606428	120606544	+	15.82446	NA	intron (NM_024408, intron 1 of 33)	intron (NM_024408, intron 1 of 33)	5831	NM_001200001	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_100992	chr8	131553821	131554213	+	15.82346	NA	Intergenic	Intergenic	-98111	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_49406	chr19	46010569	46010787	+	15.82346	NA	promoter-TSS (NM_003370)	promoter-TSS (NM_003370)	-10	NM_003370	7408	Hs.515469	NM_003370	HPRD:03415	VASP	-	vasodilator-stimulated phosphoprotein	protein-coding
19-PTNLD28-TUMOR_peak_33778	chr15	59587208	59587397	+	15.82346	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	77769	NM_004998	4643	Hs.654506	NM_004998	HPRD:03281	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
19-PTNLD28-TUMOR_peak_68336	chr3	52284488	52284661	+	15.82346	NA	TTS (NM_001122870)	TTS (NM_001122870)	4388	NM_001122870	132160	Hs.373560	NM_144641	HPRD:12350	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent, 1M	protein-coding
19-PTNLD28-TUMOR_peak_9437	chr1	203474758	203474902	+	15.82084	NA	intron (NM_014359, intron 7 of 7)	intron (NM_014359, intron 7 of 7)	11559	NM_014359	26254	Hs.632468	NM_014359	HPRD:05498	OPTC	OPT	opticin	protein-coding
19-PTNLD28-TUMOR_peak_4946	chr1	94160496	94160683	+	15.81706	NA	intron (NM_001261408, intron 3 of 13)	intron (NM_001261408, intron 3 of 13)	-13195	NM_003567	8412	Hs.36958	NM_003567	HPRD:05268	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
19-PTNLD28-TUMOR_peak_44892	chr18	20839606	20840054	+	15.81471	NA	non-coding (NR_023359, exon 7 of 7)	non-coding (NR_023359, exon 7 of 7)	104041	NM_138375	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_61797	chr20	48956013	48956180	+	15.81237	NA	Intergenic	Intergenic	-18217	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_84222	chr5	175665098	175665241	+	15.81237	NA	promoter-TSS (NM_198567)	promoter-TSS (NM_198567)	-201	NM_198567	375484	Hs.719847	NM_198567	HPRD:13486	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO-interacting motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_9322	chr1	202183197	202183537	+	15.81063	NA	promoter-TSS (NM_001017404)	promoter-TSS (NM_001017404)	84	NM_001017404	59352	Hs.497402	NM_021636	HPRD:05974	LGR6	GPCR|VTS20631	leucine-rich repeat containing G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_84623	chr5	180843106	180843291	+	15.81017	NA	Intergenic	Intergenic	48910	NM_001005221	729759	Hs.632360	NM_001005221	HPRD:14971	OR4F29	OR7-21	olfactory receptor, family 4, subfamily F, member 29	protein-coding
19-PTNLD28-TUMOR_peak_23	chr1	416549	416734	+	15.81017	NA	Intergenic	Intergenic	48982	NM_001005277	81399	Hs.632360	NM_001005277	HPRD:14969	OR4F16	OR1-1|OR7-21	olfactory receptor, family 4, subfamily F, member 16	protein-coding
19-PTNLD28-TUMOR_peak_54851	chr2	110812576	110812885	+	15.80135	NA	Intergenic	LTR10D|LTR|ERV1	14889	NR_036225	100422994		NR_036225	miRBase:MI0015871	MIR4267	-	microRNA 4267	ncRNA
19-PTNLD28-TUMOR_peak_95343	chr7	130797318	130797494	+	15.80135	NA	intron (NM_001145354, intron 1 of 18)	AluJr|SINE|Alu	2551	NM_001145354	4289	Hs.44693	NM_013255	HPRD:16129	MKLN1	TWA2	muskelin 1, intracellular mediator containing kelch motifs	protein-coding
19-PTNLD28-TUMOR_peak_52541	chr2	46078843	46078982	+	15.80022	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	199869	NM_005400	5581	Hs.580351	NM_005400	HPRD:01500	PRKCE	PKCE|nPKC-epsilon	protein kinase C, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_86047	chr6	25389810	25389947	+	15.80022	NA	intron (NM_017640, intron 2 of 36)	intron (NM_017640, intron 2 of 36)	110222	NM_001173977	55604	Hs.649550	NM_017640	HPRD:11285	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
19-PTNLD28-TUMOR_peak_52974	chr2	61886670	61886832	+	15.80022	NA	Intergenic	Intergenic	-121333	NM_003400	7514	Hs.370770	NM_003400	HPRD:03975	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
19-PTNLD28-TUMOR_peak_92064	chr7	37941566	37942044	+	15.80022	NA	Intergenic	Intergenic	14720	NM_003014	6424	Hs.658169	NM_003014	HPRD:07357	SFRP4	FRP-4|FRPHE|sFRP-4	secreted frizzled-related protein 4	protein-coding
19-PTNLD28-TUMOR_peak_30600	chr14	59931598	59932141	+	15.80022	NA	exon (NM_022571, exon 1 of 1)	exon (NM_022571, exon 1 of 1)	190	NM_022571	64582	Hs.647573	NM_022571		GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
19-PTNLD28-TUMOR_peak_38664	chr16	72882694	72882856	+	15.80022	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	199499	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_4215	chr1	68092308	68092435	+	15.80022	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-58489	NM_001199741	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_84307	chr5	176831461	176831659	+	15.79842	NA	exon (NM_000505, exon 8 of 14)	exon (NM_000505, exon 8 of 14)	-3923	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
19-PTNLD28-TUMOR_peak_32054	chr14	100648619	100648819	+	15.79659	NA	Intergenic	Intergenic	-22707	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_2175	chr1	33257597	33257755	+	15.79659	NA	intron (NM_003680, intron 5 of 12)	intron (NM_003680, intron 5 of 12)	-25367	NM_001256121	64766	Hs.440880	NM_022753	HPRD:07803	S100PBP	S100PBPR	S100P binding protein	protein-coding
19-PTNLD28-TUMOR_peak_15428	chr10	105428485	105428639	+	15.79659	NA	intron (NM_014631, intron 6 of 13)	CpG	-77975	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18084	chr11	35965763	35966109	+	15.79659	NA	intron (NM_174902, intron 1 of 5)	CpG	324	NM_174902	143458	Hs.745134	NM_174902	HPRD:14063	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_42985	chr17	63630656	63630837	+	15.79659	NA	TTS (NM_001199165)	TTS (NM_001199165)	-73006	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_61888	chr20	49613557	49613726	+	15.79659	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	26034	NM_002237	3755	Hs.118695	NM_002237	HPRD:04809	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel, subfamily G, member 1	protein-coding
19-PTNLD28-TUMOR_peak_90058	chr6	151638414	151638552	+	15.79659	NA	intron (NM_005100, intron 3 of 4)	Plat_L3|LINE|CR1	-8183	NM_144497	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_28235	chr13	50069917	50070479	+	15.79659	NA	promoter-TSS (NM_001040444)	promoter-TSS (NM_001040444)	-330	NM_001040444	51131	Hs.369039	NM_016119	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
19-PTNLD28-TUMOR_peak_84868	chr6	3212031	3212326	+	15.79659	NA	Intergenic	Intergenic	15790	NM_178012	347733	Hs.300701	NM_178012	HPRD:14707	TUBB2B	PMGYSA|bA506K6.1	tubulin, beta 2B class IIb	protein-coding
19-PTNLD28-TUMOR_peak_82065	chr5	131400518	131400687	+	15.79659	NA	Intergenic	Intergenic	4255	NM_000588	3562	Hs.694	NM_000588	HPRD:00987	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
19-PTNLD28-TUMOR_peak_74047	chr4	4040757	4041043	+	15.79659	NA	Intergenic	Intergenic	-83752	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_8220	chr1	172447729	172447896	+	15.79089	NA	Intergenic	L2c|LINE|L2	25779	NM_001300760	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_70159	chr3	122398886	122399140	+	15.79089	NA	promoter-TSS (NM_017554)	promoter-TSS (NM_017554)	-659	NM_017554	54625	Hs.518203	NM_017554	HPRD:11421	PARP14	ARTD8|BAL2|PARP-14|pART8	poly (ADP-ribose) polymerase family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_47044	chr19	8376373	8376549	+	15.78916	NA	exon (NM_005001, exon 4 of 4)	exon (NM_005001, exon 4 of 4)	-3221	NM_001165895	51293	Hs.558499	NM_016579	HPRD:05929	CD320	8D6|8D6A|TCBLR	CD320 molecule	protein-coding
19-PTNLD28-TUMOR_peak_81066	chr5	88080904	88081045	+	15.78682	NA	intron (NM_001193347, intron 4 of 11)	intron (NM_001193347, intron 4 of 11)	38770	NM_001193349	4208	Hs.649965	NM_002397	HPRD:02809	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
19-PTNLD28-TUMOR_peak_81818	chr5	122796050	122796253	+	15.77947	NA	Intergenic	L2a|LINE|L2	-36865	NM_153223	153241	Hs.483209	NM_153223	HPRD:08769	CEP120	CCDC100	centrosomal protein 120kDa	protein-coding
19-PTNLD28-TUMOR_peak_95191	chr7	128972743	128972882	+	15.77947	NA	intron (NM_001130720, intron 1 of 16)	intron (NM_001130720, intron 1 of 16)	-35152	NM_001130723	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_102513	chr9	24218659	24219113	+	15.77947	NA	Intergenic	Intergenic	326788	NM_001271706	100129669	Hs.573530	NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
19-PTNLD28-TUMOR_peak_85888	chr6	21740180	21740328	+	15.77947	NA	intron (NR_015410, intron 2 of 11)	L2b|LINE|L2	73579	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_13266	chr10	44882090	44882235	+	15.77947	NA	Intergenic	CpG-2763	-1617	NM_001033886	6387	Hs.522891	NM_000609	HPRD:02904	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
19-PTNLD28-TUMOR_peak_93751	chr7	84671057	84671194	+	15.77947	NA	intron (NM_152754, intron 8 of 16)	intron (NM_152754, intron 8 of 16)	80122	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_16304	chr10	133836685	133836797	+	15.77947	NA	Intergenic	Intergenic	-41306	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_97193	chr8	11895756	11896005	+	15.77947	NA	Intergenic	HERVE-int|LTR|ERV1	33376	NM_001195257	100133267	Hs.581979	NM_001195257	ENSG00000233050	LOC100133267	-	defensin, beta 130-like	protein-coding
19-PTNLD28-TUMOR_peak_22946	chr12	8572068	8572192	+	15.77947	NA	Intergenic	HERVE-int|LTR|ERV1	-28782	NR_024420	389634	Hs.434403	NM_001012988	HPRD:18395	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
19-PTNLD28-TUMOR_peak_41658	chr17	41837834	41838003	+	15.77947	NA	Intergenic	Intergenic	-1762	NM_025237	50964	Hs.349204	NM_025237	HPRD:05762	SOST	CDD|SOST1|VBCH	sclerostin	protein-coding
19-PTNLD28-TUMOR_peak_46625	chr19	2005032	2005314	+	15.77947	NA	intron (NM_017797, intron 1 of 8)	L1M5|LINE|L1	10529	NM_017797	55643	Hs.465543	NM_017797	HPRD:12252	BTBD2	-	BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_100804	chr8	128598288	128598697	+	15.77947	NA	Intergenic	Intergenic	-104108	NR_117100	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_65810	chr22	43559876	43560169	+	15.77947	NA	TTS (NM_000714)	TTS (NM_000714)	12081	NM_001256530	706	Hs.202	NM_000714	HPRD:15913	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|mDRC|pk18	translocator protein (18kDa)	protein-coding
19-PTNLD28-TUMOR_peak_18401	chr11	46391116	46391242	+	15.77947	NA	intron (NM_001199268, intron 5 of 29)	intron (NM_001199268, intron 5 of 29)	-6773	NR_039837	100616368		NR_039837		MIR4688	-	microRNA 4688	ncRNA
19-PTNLD28-TUMOR_peak_34447	chr15	74257182	74257382	+	15.77947	NA	Intergenic	Intergenic	27407	NM_001256675	9399	Hs.194816	NM_004809	HPRD:16314	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_67865	chr3	45527752	45527969	+	15.77947	NA	intron (NM_015340, intron 11 of 21)	intron (NM_015340, intron 11 of 21)	23177	NR_048543	100885795	Hs.641094	NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15668	chr10	113943259	113943639	+	15.77947	NA	promoter-TSS (NM_020918)	promoter-TSS (NM_020918)	88	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_63246	chr21	34768186	34768440	+	15.77947	NA	Intergenic	Intergenic	-6889	NM_005534	3460	Hs.634632	NM_005534	HPRD:00956	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
19-PTNLD28-TUMOR_peak_27114	chr12	127778195	127778372	+	15.77947	NA	Intergenic	LTR16D2|LTR|ERVL	46334	NR_110057	101927616	Hs.637827	NR_110057	ENSG00000256362	LOC101927616	-	uncharacterized LOC101927616	ncRNA
19-PTNLD28-TUMOR_peak_38276	chr16	66988108	66988229	+	15.77947	NA	Intergenic	Intergenic	-6964	NM_001185177	23491	Hs.268700	NM_012122	HPRD:07014	CES3	ES31	carboxylesterase 3	protein-coding
19-PTNLD28-TUMOR_peak_70829	chr3	131254564	131254734	+	15.77947	NA	intron (NM_001289112, intron 15 of 15)	MER5A1|DNA|hAT-Charlie	-32789	NM_007208	11222	Hs.205163	NM_007208	HPRD:06175	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_19165	chr11	64420707	64420877	+	15.77947	NA	intron (NM_138732, intron 10 of 19)	intron (NM_138732, intron 10 of 19)	-10005	NM_138734	9379	Hs.372938	NM_015080	HPRD:11859	NRXN2	-	neurexin 2	protein-coding
19-PTNLD28-TUMOR_peak_10535	chr1	226994813	226994955	+	15.77947	NA	Intergenic	Intergenic	-63389	NM_012486	5664	Hs.25363	NM_000447	HPRD:02860	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
19-PTNLD28-TUMOR_peak_4499	chr1	81410424	81410837	+	15.77947	NA	Intergenic	L1HS|LINE|L1	-754825	NM_001297704	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_7670	chr1	161251955	161252158	+	15.77947	NA	intron (NM_001102566, intron 1 of 2)	SVA_D|Other|Other	23539	NM_001102566	654790	Hs.433150	NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_33942	chr15	63902477	63902771	+	15.77947	NA	intron (NM_003922, intron 77 of 77)	intron (NM_003922, intron 77 of 77)	-9598	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48581	chr19	34534962	34535262	+	15.77820	NA	Intergenic	MER77|LTR|ERVL	-128240	NM_015578	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_62460	chr20	60663647	60663802	+	15.77820	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-22858	NM_003185	6874	Hs.18857	NM_003185	HPRD:11797	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_99385	chr8	86157624	86158469	+	15.77820	NA	5' UTR (NM_198584, exon 1 of 7)	5' UTR (NM_198584, exon 1 of 7)	330	NM_198584	377677	Hs.127189	NM_198584	HPRD:12992	CA13	CAXIII	carbonic anhydrase XIII	protein-coding
19-PTNLD28-TUMOR_peak_28117	chr13	46219204	46219759	+	15.77820	NA	Intergenic	L1PA2|LINE|L1	-29607	NM_182542	220081	Hs.668747	NM_182542	HPRD:08729	ERICH6B	FAM194B	glutamate-rich 6B	protein-coding
19-PTNLD28-TUMOR_peak_49195	chr19	42320939	42321267	+	15.77820	NA	Intergenic	L1MD2|LINE|L1	20581	NM_001815	1084	Hs.11	NM_001815	HPRD:16450	CEACAM3	CD66D|CEA|CGM1|W264|W282	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding
19-PTNLD28-TUMOR_peak_30267	chr14	51915796	51916033	+	15.77820	NA	Intergenic	Intergenic	-39925	NM_001042481	122786	Hs.434914	NM_152330	HPRD:12646	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_33073	chr15	37196536	37196718	+	15.77820	NA	intron (NR_051953, intron 8 of 11)	intron (NR_051953, intron 8 of 11)	-17893	NR_024264	145845	Hs.302693	NM_001101327		LOC145845	-	uncharacterized LOC145845	ncRNA
19-PTNLD28-TUMOR_peak_65895	chr22	45216604	45216763	+	15.77820	NA	intron (NM_001017526, intron 6 of 12)	intron (NM_001017526, intron 6 of 12)	68245	NM_001017526	23779	Hs.102336	NM_181335	HPRD:06448	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
19-PTNLD28-TUMOR_peak_72512	chr3	177332844	177333118	+	15.77820	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	173272	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_17087	chr11	10416403	10416648	+	15.77820	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-55343	NM_001172431	272	Hs.501890	NM_000480	HPRD:00041	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_15102	chr10	99210798	99210972	+	15.77632	NA	intron (NM_001287803, intron 2 of 11)	intron (NM_001287803, intron 2 of 11)	4997	NM_198043	84287	Hs.76662	NM_032327	HPRD:15712	ZDHHC16	APH2|DHHC-16	zinc finger, DHHC-type containing 16	protein-coding
19-PTNLD28-TUMOR_peak_97844	chr8	27503963	27504264	+	15.77632	NA	intron (NM_016240, intron 1 of 5)	intron (NM_016240, intron 1 of 5)	12536	NM_016240	51435	Hs.128856	NM_016240	HPRD:04104	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_55032	chr2	113472961	113473094	+	15.77632	NA	Intergenic	Intergenic	49227	NM_152515	150468	Hs.434250	NM_152515		CKAP2L	-	cytoskeleton associated protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_18989	chr11	62323734	62323917	+	15.77328	NA	Intergenic	Intergenic	3953	NR_037427	100500804		NR_037427		MIR3654	-	microRNA 3654	ncRNA
19-PTNLD28-TUMOR_peak_355	chr1	6305216	6305548	+	15.77016	NA	exon (NM_001024598, exon 4 of 4)	exon (NM_001024598, exon 4 of 4)	1130	NM_001024598	390992	Hs.532677	NM_001024598	HPRD:18618	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_70259	chr3	123590963	123591170	+	15.77016	NA	intron (NM_053025, intron 2 of 33)	MER58B|DNA|hAT-Charlie	12083	NM_053026	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_50115	chr19	52693500	52693780	+	15.76973	NA	intron (NM_014225, intron 1 of 14)	CpG	585	NM_014225	5518	Hs.467192	NM_014225		PPP2R1A	PP2A-Aalpha|PP2AAALPHA|PR65A	protein phosphatase 2, regulatory subunit A, alpha	protein-coding
19-PTNLD28-TUMOR_peak_13245	chr10	44357770	44358010	+	15.76892	NA	intron (NR_038268, intron 2 of 4)	MIR|SINE|MIR	3031	NR_038268	100506835	Hs.462615	NR_038268	ENSG00000226808	LINC00840	-	long intergenic non-protein coding RNA 840	ncRNA
19-PTNLD28-TUMOR_peak_90820	chr7	1215824	1215984	+	15.76892	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	15483	NR_110070	101927021	Hs.529566	NR_110065		LOC101927021	-	uncharacterized LOC101927021	ncRNA
19-PTNLD28-TUMOR_peak_41738	chr17	42852302	42852633	+	15.76828	NA	intron (NM_002390, intron 14 of 26)	CpG	15899	NM_002390	4185	Hs.6088	NM_002390	HPRD:01114	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
19-PTNLD28-TUMOR_peak_45148	chr18	30383594	30383859	+	15.75142	NA	Intergenic	Intergenic	-30752	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_56238	chr2	149939399	149939532	+	15.74499	NA	intron (NM_177964, intron 1 of 6)	intron (NM_177964, intron 1 of 6)	44484	NM_177964	130576	Hs.357567	NM_177964	HPRD:14045	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_79914	chr5	54516337	54516847	+	15.74499	NA	exon (NM_001190787, exon 7 of 7)	exon (NM_001190787, exon 7 of 7)	6551	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
19-PTNLD28-TUMOR_peak_70284	chr3	123979460	123979604	+	15.74499	NA	intron (NM_001024660, intron 3 of 59)	MER115|DNA|hAT-Tip100	-113647	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_30449	chr14	55913683	55913879	+	15.74499	NA	Intergenic	Intergenic	-6518	NM_199047	387332	Hs.528278	NM_199047		TBPL2	TBP2|TRF3	TATA box binding protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_70432	chr3	125509981	125510164	+	15.74499	NA	promoter-TSS (NR_031687)	promoter-TSS (NR_031687)	-677	NR_031687	100302204		NR_031687	miRBase:MI0006421	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1	microRNA 548i-1	ncRNA
19-PTNLD28-TUMOR_peak_90945	chr7	2720634	2720836	+	15.74499	NA	intron (NM_133463, intron 1 of 6)	intron (NM_133463, intron 1 of 6)	1579	NM_133463	155185	Hs.42221	NM_133463	HPRD:17232	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_97228	chr8	12379642	12379862	+	15.74499	NA	intron (NR_040091, intron 5 of 6)	HERVS71-int|LTR|ERV1	85230	NR_040092	100506990	Hs.656893	NR_040091		LOC100506990	-	uncharacterized LOC100506990	ncRNA
19-PTNLD28-TUMOR_peak_92526	chr7	50514356	50514517	+	15.74499	NA	exon (NM_001287493, exon 3 of 3)	exon (NM_001287493, exon 3 of 3)	3652	NM_001287496	63979	Hs.137516	NM_022116	HPRD:10958	FIGNL1	-	fidgetin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_84934	chr6	3825705	3826023	+	15.73781	NA	Intergenic	MER58A|DNA|hAT-Charlie	-23768	NM_012135	26240	Hs.140944	NM_012135	HPRD:16883	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
19-PTNLD28-TUMOR_peak_61427	chr20	44978870	44979040	+	15.73781	NA	3' UTR (NM_015945, exon 10 of 10)	3' UTR (NM_015945, exon 10 of 10)	14142	NM_015945	51006	Hs.593344	NM_015945	HPRD:15371	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 (GDP-fucose transporter), member C2	protein-coding
19-PTNLD28-TUMOR_peak_47018	chr19	8053213	8053469	+	15.73150	NA	intron (NM_001419, intron 2 of 5)	L2|LINE|L2	17188	NM_001419	1994	Hs.184492	NM_001419	HPRD:16025	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_31836	chr14	94808660	94808915	+	15.73150	NA	Intergenic	Intergenic	-19099	NM_001756	866	Hs.532635	NM_001756	HPRD:00419	SERPINA6	CBG	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6	protein-coding
19-PTNLD28-TUMOR_peak_71432	chr3	143048501	143049003	+	15.73073	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	-12336	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36811	chr16	22824624	22824918	+	15.73073	NA	Intergenic	CpG	-1089	NM_006043	9956	Hs.115830	NM_006043	HPRD:04957	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_94834	chr7	110013690	110013893	+	15.73073	NA	Intergenic	Intergenic	-413521	NR_003024	442720	Hs.530096	NR_003024	ENSG00000237064	EIF3IP1	RG208K23	eukaryotic translation initiation factor 3, subunit I pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_19718	chr11	69986258	69986443	+	15.73073	NA	intron (NR_030691, intron 11 of 24)	MER41C|LTR|ERV1	54834	NR_030691	55107	Hs.503074	NM_018043	HPRD:18202	ANO1	DOG1|ORAOV2|TAOS2|TMEM16A	anoctamin 1, calcium activated chloride channel	protein-coding
19-PTNLD28-TUMOR_peak_36817	chr16	23013881	23014240	+	15.73073	NA	Intergenic	Intergenic	146531	NM_020718	57478	Hs.183817	NM_020718	HPRD:15634	USP31	-	ubiquitin specific peptidase 31	protein-coding
19-PTNLD28-TUMOR_peak_83417	chr5	154377296	154377623	+	15.73073	NA	Intergenic	Intergenic	-15801	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
19-PTNLD28-TUMOR_peak_49570	chr19	47655978	47656187	+	15.73073	NA	intron (NR_027280, intron 3 of 8)	intron (NR_027280, intron 3 of 8)	21967	NR_027280	10055	Hs.515500	NM_005500	HPRD:18010	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_5255	chr1	105391789	105392106	+	15.73073	NA	Intergenic	L1HS|LINE|L1	776302	NR_033990	100129138	Hs.514487	NR_033990	ENSG00000215869	LOC100129138	-	THAP domain containing, apoptosis associated protein 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103139	chr9	40697607	40697775	+	15.73073	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2600	NM_001083124	727830	Hs.632078	NM_001083124	ENSG00000147926	SPATA31A3	FAM75A3	SPATA31 subfamily A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_100858	chr8	129090038	129090208	+	15.73073	NA	intron (NR_003367, intron 5 of 7)	intron (NR_003367, intron 5 of 7)	28725	NR_031612	100302175		NR_031612	miRBase:MI0006340	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_79227	chr5	22214318	22214445	+	15.73073	NA	intron (NM_004061, intron 3 of 14)	intron (NM_004061, intron 3 of 14)	71920	NR_003921	5369	Hs.247975	NM_031887	HPRD:15940	PMCHL1	-	pro-melanin-concentrating hormone-like 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_79681	chr5	42311387	42311575	+	15.73073	NA	Intergenic	Intergenic	-112396	NM_000163	2690	Hs.125180	NM_000163	HPRD:02971	GHR	GHBP	growth hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_70962	chr3	133931864	133932053	+	15.73073	NA	intron (NM_001005861, intron 2 of 14)	intron (NM_001005861, intron 2 of 14)	37628	NM_002958	6259	Hs.654562	NM_002958	HPRD:02751	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_4676	chr1	87299372	87299590	+	15.73073	NA	Intergenic	Intergenic	80626	NM_004261	9403	Hs.362728	NM_004261	HPRD:09376	SEP15	-	15 kDa selenoprotein	protein-coding
19-PTNLD28-TUMOR_peak_41019	chr17	31755703	31756152	+	15.73073	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	104852	NR_037584	100506677	Hs.652571	NR_037584		AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
19-PTNLD28-TUMOR_peak_103666	chr9	71638615	71638906	+	15.73073	NA	Intergenic	LTR33A|LTR|ERVL	-9721	NM_002732	5568	Hs.158029	NM_002732	HPRD:01483	PRKACG	KAPG|PKACg	protein kinase, cAMP-dependent, catalytic, gamma	protein-coding
19-PTNLD28-TUMOR_peak_39585	chr17	882744	883028	+	15.72891	NA	exon (NM_022463, exon 1 of 8)	exon (NM_022463, exon 1 of 8)	112	NM_022463	64359	Hs.527989	NM_022463	HPRD:14858	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
19-PTNLD28-TUMOR_peak_10476	chr1	226285639	226286071	+	15.72891	NA	Intergenic	MER4A|LTR|ERV1	35427	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_40060	chr17	8056916	8057111	+	15.72785	NA	Intergenic	Intergenic	-1260	NM_002616	5187	Hs.445534	NM_002616	HPRD:03774	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_82846	chr5	142206736	142207170	+	15.72510	NA	intron (NM_015071, intron 1 of 22)	MIRb|SINE|MIR	41522	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_959	chr1	15272105	15272367	+	15.72510	NA	promoter-TSS (NM_001017999)	promoter-TSS (NM_001017999)	-179	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_35114	chr15	89443966	89444137	+	15.72510	NA	intron (NM_005928, intron 6 of 7)	intron (NM_005928, intron 6 of 7)	-5281	NM_178232	145864	Hs.447530	NM_178232	HPRD:13629	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
19-PTNLD28-TUMOR_peak_70656	chr3	128523739	128523880	+	15.72510	NA	intron (NM_004637, intron 3 of 5)	intron (NM_004637, intron 3 of 5)	66575	NR_034179	653712	Hs.653243	NR_034179	ENSG00000231305	LOC653712	-	intraflagellar transport 122 homolog (Chlamydomonas) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_45920	chr18	55845848	55846048	+	15.72510	NA	intron (NM_001243960, intron 2 of 28)	intron (NM_001243960, intron 2 of 28)	-16674	NM_001144970	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_104672	chr9	96773513	96773657	+	15.72334	NA	Intergenic	Intergenic	-19491	NM_177995	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59559	chr20	3657365	3657556	+	15.72334	NA	intron (NM_001282447, intron 3 of 21)	intron (NM_001282447, intron 3 of 21)	5318	NM_025220	80332	Hs.173716	NM_025220	HPRD:06173	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
19-PTNLD28-TUMOR_peak_91074	chr7	5458754	5458941	+	15.72199	NA	intron (NM_001080495, intron 2 of 29)	CpG	4330	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_64197	chr22	17386905	17387014	+	15.71902	NA	Intergenic	Intergenic	78595	NR_003607	27437	Hs.143955	NR_003607	ENSG00000229027	HSFY1P1	CECR8|HSFYL1|HSFYP1|NCRNA00016	heat shock transcription factor, Y-linked 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_67572	chr3	38199159	38199323	+	15.71615	NA	Intergenic	Intergenic	-7785	NM_005109	9943	Hs.475970	NM_005109	HPRD:06809	OXSR1	OSR1	oxidative stress responsive 1	protein-coding
19-PTNLD28-TUMOR_peak_24583	chr12	54944048	54944235	+	15.71606	NA	intron (NM_001288769, intron 1 of 14)	intron (NM_001288769, intron 1 of 14)	277	NM_001288769	5153	Hs.530871	NM_000924	HPRD:01388	PDE1B	PDE1B1|PDES1B	phosphodiesterase 1B, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_17986	chr11	34329997	34330192	+	15.71606	NA	intron (NM_145804, intron 1 of 16)	Tigger15a|DNA|TcMar-Tigger	49461	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_66553	chr3	10745642	10745879	+	15.71606	NA	Intergenic	MER74A|LTR|ERVL	60117	NR_027102	285370	Hs.157613	NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
19-PTNLD28-TUMOR_peak_29786	chr14	33178377	33178653	+	15.71606	NA	intron (NM_004274, intron 9 of 13)	intron (NM_004274, intron 9 of 13)	-229944	NM_001164749	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_76919	chr4	123866333	123866574	+	15.71606	NA	intron (NM_145207, intron 8 of 15)	L1PA4|LINE|L1	22228	NM_145207	166378	Hs.709648	NM_145207	HPRD:11595	SPATA5	AFG2|SPAF	spermatogenesis associated 5	protein-coding
19-PTNLD28-TUMOR_peak_77719	chr4	155004402	155004610	+	15.71606	NA	Intergenic	Intergenic	-294278	NM_003013	6423	Hs.481022	NM_003013	HPRD:16041	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled-related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_19446	chr11	66800431	66800562	+	15.71606	NA	intron (NM_001177880, intron 2 of 7)	intron (NM_001177880, intron 2 of 7)	9680	NM_177963	91683	Hs.287636	NM_177963		SYT12	SYT11|sytXII	synaptotagmin XII	protein-coding
19-PTNLD28-TUMOR_peak_80606	chr5	72416335	72416643	+	15.71606	NA	5' UTR (NM_001161342, exon 1 of 4)	5' UTR (NM_001161342, exon 1 of 4)	101	NM_173490	134285	Hs.162246	NM_173490	HPRD:14057	TMEM171	PRP2	transmembrane protein 171	protein-coding
19-PTNLD28-TUMOR_peak_33583	chr15	52121754	52122403	+	15.71606	NA	intron (NM_014547, intron 1 of 9)	CpG	253	NM_014547	29766	Hs.4998	NM_014547	HPRD:10389	TMOD3	UTMOD	tropomodulin 3 (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_61381	chr20	44615991	44616157	+	15.71606	NA	Intergenic	Intergenic	-15241	NM_022095	63925	Hs.174193	NM_022095	HPRD:11709	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
19-PTNLD28-TUMOR_peak_57548	chr2	192719137	192719542	+	15.70169	NA	Intergenic	Intergenic	-7333	NM_004657	8436	Hs.26530	NM_004657	HPRD:09470	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding
19-PTNLD28-TUMOR_peak_7807	chr1	163566724	163566935	+	15.70169	NA	Intergenic	MER4E|LTR|ERV1	-173848	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15576	chr10	111827817	111827987	+	15.70169	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-59763	NR_038943	100505933	Hs.604103	NR_038943		ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69809	chr3	112361884	112362051	+	15.70169	NA	Intergenic	Intergenic	-1977	NM_199511	151887	Hs.477128	NM_199511	HPRD:10508	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
19-PTNLD28-TUMOR_peak_45088	chr18	28810533	28810783	+	15.70169	NA	Intergenic	Intergenic	-67839	NM_004948	1823	Hs.567260	NM_004948	HPRD:00511	DSC1	CDHF1|DG2/DG3	desmocollin 1	protein-coding
19-PTNLD28-TUMOR_peak_63897	chr21	45231999	45232445	+	15.70169	NA	non-coding (NR_026961, exon 1 of 2)	non-coding (NR_026961, exon 1 of 2)	226	NR_026961	284837	Hs.592159	NM_194310	HPRD:11256	LOC284837	-	uncharacterized LOC284837	ncRNA
19-PTNLD28-TUMOR_peak_25503	chr12	88055716	88056060	+	15.70169	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	122600	NR_033410	400058	Hs.572212	NR_033410		MKRN9P	MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3	makorin ring finger protein 9, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_21772	chr11	122942983	122943145	+	15.70169	NA	TTS (NM_024769)	TTS (NM_024769)	-10021	NM_153201	3312	Hs.180414	NM_006597	HPRD:07205	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock 70kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_31426	chr14	77554703	77554908	+	15.70169	NA	Intergenic	Intergenic	-9773	NM_033426	85457	Hs.709066	NM_033426	HPRD:13890	CIPC	KIAA1737	CLOCK-interacting pacemaker	protein-coding
19-PTNLD28-TUMOR_peak_89052	chr6	109742065	109742211	+	15.70169	NA	intron (NR_104429, intron 5 of 8)	intron (NR_104429, intron 5 of 8)	-19793	NM_003080	6610	Hs.55235	NM_003080	HPRD:04608	SMPD2	ISC1|NSMASE|NSMASE1	sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)	protein-coding
19-PTNLD28-TUMOR_peak_52923	chr2	59528989	59529215	+	15.70169	NA	Intergenic	Intergenic	84259	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LOC101927285	-	uncharacterized LOC101927285	ncRNA
19-PTNLD28-TUMOR_peak_57242	chr2	180319655	180319842	+	15.70169	NA	intron (NM_152520, intron 6 of 9)	Tigger3b|DNA|TcMar-Tigger	107567	NM_001113398	151126	Hs.655005	NM_152520	HPRD:15823	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
19-PTNLD28-TUMOR_peak_90917	chr7	2484105	2484444	+	15.70169	NA	intron (NR_108066, intron 1 of 1)	intron (NR_108066, intron 1 of 1)	6876	NR_108066	101927181	Hs.288853	NR_108066		LOC101927181	-	uncharacterized LOC101927181	ncRNA
19-PTNLD28-TUMOR_peak_110051	chrX	154664705	154664851	+	15.70169	NA	Intergenic	L1PA10|LINE|L1	-22400	NR_036049	100302111		NR_036049		MIR1184-1	MIR1184|MIRN1184|hsa-mir-1184|hsa-mir-1184-1	microRNA 1184-1	ncRNA
19-PTNLD28-TUMOR_peak_94226	chr7	99216455	99216586	+	15.69865	NA	intron (NM_145115, intron 2 of 7)	L2c|LINE|L2	1949	NM_145115	221785	Hs.446297	NM_145115	HPRD:15807	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
19-PTNLD28-TUMOR_peak_95752	chr7	139116319	139116481	+	15.69865	NA	Intergenic	Intergenic	-4128	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
19-PTNLD28-TUMOR_peak_8904	chr1	186345152	186345300	+	15.69854	NA	promoter-TSS (NM_003292)	promoter-TSS (NM_003292)	336	NM_001164245	54953	Hs.371210	NM_017847	HPRD:12723	C1orf27	ODR4|TTG1|odr-4	chromosome 1 open reading frame 27	protein-coding
19-PTNLD28-TUMOR_peak_38540	chr16	70333105	70333878	+	15.69390	NA	intron (NM_001257175, intron 1 of 8)	intron (NM_001257175, intron 1 of 8)	429	NM_007242	11269	Hs.221761	NM_007242	HPRD:05781	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
19-PTNLD28-TUMOR_peak_67368	chr3	31050481	31050730	+	15.69390	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-114452	NM_207359	339896	Hs.657052	NM_207359	HPRD:13557	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_8457	chr1	178471001	178471130	+	15.69390	NA	Intergenic	Intergenic	-11147	NM_001170722	84066	Hs.534501	NM_032126	HPRD:13169	TEX35	C1orf49|TSC24	testis expressed 35	protein-coding
19-PTNLD28-TUMOR_peak_86900	chr6	33901285	33901521	+	15.69390	NA	Intergenic	AluJo|SINE|Alu	34491	NR_106982	102466816		NR_106982		MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
19-PTNLD28-TUMOR_peak_61327	chr20	44002576	44002751	+	15.68915	NA	intron (NM_014477, intron 4 of 4)	intron (NM_014477, intron 4 of 4)	4294	NM_014477	27296	Hs.710271	NM_014477	HPRD:12733	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
19-PTNLD28-TUMOR_peak_75490	chr4	60072633	60072797	+	15.68915	NA	Intergenic	L1PA3|LINE|L1	-2096164	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_48847	chr19	38424343	38424506	+	15.68868	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	26563	NM_015073	23094	Hs.655502	NM_015073	HPRD:18755	SIPA1L3	SPAL3	signal-induced proliferation-associated 1 like 3	protein-coding
19-PTNLD28-TUMOR_peak_73520	chr3	195621539	195621773	+	15.68618	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	776	NM_001010938	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_32954	chr15	33245126	33245286	+	15.68188	NA	intron (NM_001277313, intron 9 of 20)	intron (NM_001277313, intron 9 of 20)	115027	NM_001103184	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_7513	chr1	159181288	159181533	+	15.68188	NA	Intergenic	Intergenic	6361	NM_001122951	2532	Hs.153381	NM_002036	HPRD:00192	ACKR1	CCBP1|CD234|DARC|Dfy|FY|GPD|GpFy|WBCQ1	atypical chemokine receptor 1 (Duffy blood group)	protein-coding
19-PTNLD28-TUMOR_peak_64640	chr22	22995707	22995848	+	15.68188	NA	Intergenic	Intergenic	6995	NM_199127	91227	Hs.450000	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_76830	chr4	121843315	121843560	+	15.68188	NA	intron (NM_001300824, intron 1 of 13)	CpG	584	NM_018699	11107	Hs.666782	NM_018699	HPRD:17902	PRDM5	BCS2|PFM2	PR domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_22097	chr11	129304593	129304997	+	15.68178	NA	intron (NM_003658, intron 1 of 3)	intron (NM_003658, intron 1 of 3)	58914	NM_003658	8538	Hs.591944	NM_003658	HPRD:16074	BARX2	-	BARX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_15070	chr10	98592651	98592843	+	15.68178	NA	promoter-TSS (NM_032440)	promoter-TSS (NM_032440)	35	NM_032440	84458	Hs.745068	NM_032440	HPRD:07609	LCOR	MLR2	ligand dependent nuclear receptor corepressor	protein-coding
19-PTNLD28-TUMOR_peak_44894	chr18	20861801	20862264	+	15.68178	NA	Intergenic	Intergenic	126243	NM_138375	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_21854	chr11	124610536	124610760	+	15.68106	NA	intron (NM_006176, intron 1 of 3)	intron (NM_006176, intron 1 of 3)	819	NM_006176	4900	Hs.524116	NM_006176	HPRD:03828	NRGN	RC3|hng	neurogranin (protein kinase C substrate, RC3)	protein-coding
19-PTNLD28-TUMOR_peak_70084	chr3	120137865	120138037	+	15.68106	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	-23375	NR_029584	406975		NR_029584		MIR198	MIRN198|miR-198	microRNA 198	ncRNA
19-PTNLD28-TUMOR_peak_86437	chr6	30065786	30065954	+	15.67012	NA	Intergenic	Intergenic	14997	NM_007028	11074	Hs.493275	NM_007028	HPRD:10281	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
19-PTNLD28-TUMOR_peak_51890	chr2	29456320	29456620	+	15.66720	NA	exon (NM_004304, exon 14 of 29)	exon (NM_004304, exon 14 of 29)	118178	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_39133	chr16	85004215	85004516	+	15.66720	NA	Intergenic	Intergenic	40776	NM_017740	55625	Hs.461610	NM_017740	HPRD:15722	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger, DHHC-type containing 7	protein-coding
19-PTNLD28-TUMOR_peak_93379	chr7	74785664	74785804	+	15.66720	NA	intron (NR_027776, intron 5 of 5)	intron (NR_027776, intron 5 of 5)	81775	NM_001145064	729438	Hs.647031	NM_001145064		GATSL2	GATSL1	GATS protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_43697	chr17	75920915	75921406	+	15.66720	NA	Intergenic	Intergenic	-40991	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	ncRNA
19-PTNLD28-TUMOR_peak_106217	chr9	130725553	130725782	+	15.66547	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-12674	NM_203305	399665	Hs.535972	NM_203305	HPRD:13262	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102, member A	protein-coding
19-PTNLD28-TUMOR_peak_109959	chrX	153601034	153601285	+	15.66462	NA	intron (NM_001110556, intron 1 of 47)	intron (NM_001110556, intron 1 of 47)	1847	NM_001110556	2316	Hs.195464	NM_001456	HPRD:02060	FLNA	ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A, alpha	protein-coding
19-PTNLD28-TUMOR_peak_62526	chr20	61404333	61404825	+	15.66381	NA	TTS (NR_046225)	TTS (NR_046225)	3629	NR_046224	100652730	Hs.254951	NR_046224		LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
19-PTNLD28-TUMOR_peak_48244	chr19	22193738	22193886	+	15.66206	NA	promoter-TSS (NM_007153)	promoter-TSS (NM_007153)	-67	NM_007153	7757	Hs.732975	NM_007153		ZNF208	PMIDP|ZNF95	zinc finger protein 208	protein-coding
19-PTNLD28-TUMOR_peak_33489	chr15	48298193	48298700	+	15.66206	NA	Intergenic	Intergenic	-114723	NM_205850	283652	Hs.710240	NM_205850	HPRD:18055	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_98975	chr8	62185990	62186119	+	15.66206	NA	Intergenic	L1PA2|LINE|L1	-14471	NM_173519	157807	Hs.591874	NM_173519	HPRD:14581	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
19-PTNLD28-TUMOR_peak_57892	chr2	203672249	203672489	+	15.66206	NA	intron (NM_001288622, intron 9 of 12)	L1M1|LINE|L1	21588	NM_001288624	130026	Hs.516629	NM_138468	HPRD:12446	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_7982	chr1	167503172	167503342	+	15.66206	NA	Intergenic	Intergenic	-15410	NM_000734	919	Hs.156445	NM_000734	HPRD:01729	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
19-PTNLD28-TUMOR_peak_90608	chr6	169041940	169042103	+	15.66206	NA	intron (NM_022138, intron 9 of 12)	intron (NM_022138, intron 9 of 12)	200190	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_73018	chr3	187387855	187388129	+	15.66206	NA	exon (NM_001048, exon 1 of 2)	exon (NM_001048, exon 1 of 2)	209	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_54354	chr2	97643730	97643908	+	15.66206	NA	intron (NM_001122646, intron 1 of 16)	intron (NM_001122646, intron 1 of 16)	8482	NM_001122646	51252	Hs.107922	NM_016490	HPRD:14235	FAM178B	-	family with sequence similarity 178, member B	protein-coding
19-PTNLD28-TUMOR_peak_2262	chr1	34558019	34558210	+	15.66206	NA	intron (NM_052896, intron 1 of 69)	L1PA3|LINE|L1	72761	NM_001281956	114784	Hs.656915	NM_052896	HPRD:13094	CSMD2	dJ1007G16.1|dJ1007G16.2|dJ947L8.1	CUB and Sushi multiple domains 2	protein-coding
19-PTNLD28-TUMOR_peak_71738	chr3	150959601	150959770	+	15.65418	NA	intron (NM_014879, intron 1 of 2)	L1PA2|LINE|L1	7313	NM_001081455	9934	Hs.2465	NM_014879	HPRD:08820	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding
19-PTNLD28-TUMOR_peak_87534	chr6	42768256	42768551	+	15.65418	NA	Intergenic	AluSz6|SINE|Alu	-20391	NM_015349	23506	Hs.658033	NM_015349	HPRD:17180	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
19-PTNLD28-TUMOR_peak_61974	chr20	51109815	51110179	+	15.65418	NA	Intergenic	Intergenic	-127380	NR_110038	101927700	Hs.434465	NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
19-PTNLD28-TUMOR_peak_16202	chr10	127941914	127942131	+	15.65418	NA	intron (NM_001288975, intron 3 of 18)	intron (NM_001288975, intron 3 of 18)	135105	NM_001288975	8038	Hs.594351	NM_003474	HPRD:04092	ADAM12	ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA	ADAM metallopeptidase domain 12	protein-coding
19-PTNLD28-TUMOR_peak_107803	chrX	23311066	23311457	+	15.65418	NA	promoter-TSS (NR_073010)	promoter-TSS (NR_073010)	2	NR_073010	100873065	Hs.742479	NR_046436	ENSG00000233067	PTCHD1-AS	DDX53-AS1|PTCHD1AS1|PTCHD1AS2	PTCHD1 antisense RNA (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_60819	chr20	35260100	35260266	+	15.65418	NA	intron (NM_032214, intron 5 of 7)	L2c|LINE|L2	14436	NM_175077	84174	Hs.713578	NM_032214	HPRD:05955	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding
19-PTNLD28-TUMOR_peak_79345	chr5	32302986	32303417	+	15.65418	NA	intron (NM_001294343, intron 1 of 14)	intron (NM_001294343, intron 1 of 14)	9913	NM_001040446	54545	Hs.481836	NM_019061	HPRD:05933	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_4542	chr1	83647879	83648127	+	15.65418	NA	Intergenic	L1PA2|LINE|L1	-196112	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_19548	chr11	67698660	67698823	+	15.65418	NA	Intergenic	Intergenic	72854	NM_030930	81622	Hs.502989	NM_030930	HPRD:12191	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_8671	chr1	182150474	182150656	+	15.65418	NA	Intergenic	MIR3|SINE|MIR	-119718	NM_001009992	127665	Hs.684328	NM_001009992	HPRD:18361	ZNF648	-	zinc finger protein 648	protein-coding
19-PTNLD28-TUMOR_peak_109017	chrX	102879724	102879940	+	15.65418	NA	Intergenic	Intergenic	-3816	NM_001006640	9338	Hs.95243	NM_004780	HPRD:02211	TCEAL1	SIIR|WEX9|p21|pp21	transcription elongation factor A (SII)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_13316	chr10	45915968	45916206	+	15.65338	NA	intron (NM_001256153, intron 4 of 13)	intron (NM_001256153, intron 4 of 13)	32482	NR_120674	102724323	Hs.559151	NR_120674		LOC102724323	-	uncharacterized LOC102724323	ncRNA
19-PTNLD28-TUMOR_peak_31998	chr14	99988863	99988981	+	15.64905	NA	intron (NM_001144995, intron 2 of 5)	intron (NM_001144995, intron 2 of 5)	41183	NM_001099402	8812	Hs.510409	NM_003858		CCNK	CPR4	cyclin K	protein-coding
19-PTNLD28-TUMOR_peak_51829	chr2	28729125	28729250	+	15.64905	NA	intron (NM_001170585, intron 1 of 56)	intron (NM_001170585, intron 1 of 56)	10249	NM_153021	151056	Hs.444933	NM_153021	HPRD:15141	PLB1	PLB|PLB/LIP|hPLB	phospholipase B1	protein-coding
19-PTNLD28-TUMOR_peak_76751	chr4	119386976	119387283	+	15.64300	NA	Intergenic	Intergenic	-50366	NR_003135	645455	Hs.408293	NM_153243	ENSG00000154608	CEP170P1	CEP170L|FAM68B|KIAA0470L	centrosomal protein 170kDa pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_73821	chr4	1331147	1331667	+	15.64300	NA	intron (NM_001297431, intron 5 of 6)	intron (NM_001297431, intron 5 of 6)	-9697	NM_020894	57654	Hs.380475	NM_020894	HPRD:17216	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
19-PTNLD28-TUMOR_peak_57684	chr2	198815566	198815767	+	15.64300	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	146240	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C-like 1	protein-coding
19-PTNLD28-TUMOR_peak_87473	chr6	42043227	42043502	+	15.64300	NA	intron (NM_138572, intron 7 of 8)	intron (NM_138572, intron 7 of 8)	25113	NM_138572	129685	Hs.520122	NM_138572	HPRD:18167	TAF8	43|II|TAF|TAFII-43|TAFII43|TBN	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_53969	chr2	87962543	87962680	+	15.64280	NA	Intergenic	Intergenic	33332	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_88039	chr6	53599901	53600059	+	15.63852	NA	Intergenic	L1MEd|LINE|L1	-59798	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_68398	chr3	53289846	53290220	+	15.63852	NA	promoter-TSS (NM_001064)	promoter-TSS (NM_001064)	97	NM_001135055	7086	Hs.89643	NM_001064	HPRD:06001	TKT	HEL107|TK|TKT1	transketolase	protein-coding
19-PTNLD28-TUMOR_peak_51493	chr2	21023784	21023962	+	15.63852	NA	promoter-TSS (NR_104233)	promoter-TSS (NR_104233)	-983	NM_001282722	60526	Hs.187823	NM_021925	HPRD:07113	C2orf43	-	chromosome 2 open reading frame 43	protein-coding
19-PTNLD28-TUMOR_peak_14766	chr10	88964708	88964967	+	15.63523	NA	Intergenic	LTR78|LTR|ERV1	-20368	NM_001099338	728118	Hs.710565	NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
19-PTNLD28-TUMOR_peak_17346	chr11	13964520	13964692	+	15.63523	NA	Intergenic	Intergenic	-19578	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_25787	chr12	100535536	100535665	+	15.63523	NA	intron (NM_001006947, intron 1 of 12)	intron (NM_001006947, intron 1 of 12)	1042	NM_001006947	23074	Hs.620701	NM_015054	HPRD:13811	UHRF1BP1L	SHIP164	UHRF1 binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_47636	chr19	14513208	14513408	+	15.63523	NA	intron (NM_001025160, intron 10 of 18)	intron (NM_001025160, intron 10 of 18)	16887	NM_005804	10212	Hs.311609	NM_005804	HPRD:10861	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	protein-coding
19-PTNLD28-TUMOR_peak_7875	chr1	165122074	165122243	+	15.63523	NA	Intergenic	Intergenic	203320	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_62620	chr20	62463490	62463961	+	15.63402	NA	Intergenic	CpG	24296	NR_110081	101928604	Hs.676054	NR_110081		ZBTB46-AS1	-	ZBTB46 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38272	chr16	66968131	66968385	+	15.63264	NA	promoter-TSS (NR_046109)	promoter-TSS (NR_046109)	68	NM_016062	51647	Hs.9825	NM_016062	HPRD:13033	FAM96B	MIP18	family with sequence similarity 96, member B	protein-coding
19-PTNLD28-TUMOR_peak_62243	chr20	55819017	55819219	+	15.62645	NA	intron (NM_001719, intron 1 of 6)	intron (NM_001719, intron 1 of 6)	22589	NM_001719	655	Hs.473163	NM_001719	HPRD:00212	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
19-PTNLD28-TUMOR_peak_43477	chr17	73746019	73746186	+	15.62645	NA	intron (NM_001005619, intron 26 of 38)	intron (NM_001005619, intron 26 of 38)	15178	NM_000154	2584	Hs.407966	NM_000154	HPRD:05057	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_3338	chr1	48176261	48176462	+	15.62645	NA	Intergenic	CpG	274672	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_54484	chr2	100967180	100967488	+	15.62469	NA	Intergenic	Intergenic	-28139	NM_198461	164832	Hs.21380	NM_198461	HPRD:13503	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_92385	chr7	46326095	46326226	+	15.62469	NA	Intergenic	L1MB1|LINE|L1	-365289	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_4911	chr1	93804012	93804174	+	15.62469	NA	non-coding (NR_034089, exon 5 of 9)	non-coding (NR_034089, exon 5 of 9)	7275	NR_034089	100131564	Hs.732666	NR_034089		LOC100131564	-	uncharacterized LOC100131564	ncRNA
19-PTNLD28-TUMOR_peak_65714	chr22	42299010	42299226	+	15.62469	NA	exon (NM_004599, exon 17 of 19)	exon (NM_004599, exon 17 of 19)	2170	NR_029507	407039		NR_029507		MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A	microRNA 33a	ncRNA
19-PTNLD28-TUMOR_peak_94633	chr7	104563483	104563625	+	15.62469	NA	intron (NR_027374, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	3538	NR_027374	723809	Hs.124316	NR_027374		LHFPL3-AS2	-	LHFPL3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_4039	chr1	64081566	64081735	+	15.62469	NA	intron (NM_001172819, intron 1 of 10)	intron (NM_001172819, intron 1 of 10)	-7237	NM_001172818	5236	Hs.1869	NM_002633	HPRD:01389	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
19-PTNLD28-TUMOR_peak_27419	chr13	22292038	22292198	+	15.62469	NA	Intergenic	Intergenic	46903	NM_002010	2254	Hs.111	NM_002010	HPRD:02951	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
19-PTNLD28-TUMOR_peak_105158	chr9	109470164	109470348	+	15.62469	NA	Intergenic	Intergenic	91917	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234229	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
19-PTNLD28-TUMOR_peak_70500	chr3	126471148	126471370	+	15.62469	NA	intron (NM_032343, intron 4 of 7)	intron (NM_032343, intron 4 of 7)	48196	NM_032343	84303	Hs.518119	NM_032343	HPRD:13047	CHCHD6	CHCM1|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_29969	chr14	37825553	37825705	+	15.62469	NA	intron (NM_138731, intron 10 of 13)	L1PA2|LINE|L1	158511	NM_001195296	145282	Hs.660396	NM_138731	HPRD:06029	MIPOL1	-	mirror-image polydactyly 1	protein-coding
19-PTNLD28-TUMOR_peak_14832	chr10	91061651	91062002	+	15.62469	NA	5' UTR (NM_001547, exon 1 of 2)	5' UTR (NM_001547, exon 1 of 2)	120	NM_001547	3433	Hs.437609	NM_001547	HPRD:00913	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon-induced protein with tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_39644	chr17	1620855	1620987	+	15.62414	NA	intron (NM_001163673, intron 1 of 9)	intron (NM_001163673, intron 1 of 9)	1104	NM_001163673	124997	Hs.234572	NM_152348	HPRD:08748	WDR81	CAMRQ2|PPP1R166	WD repeat domain 81	protein-coding
19-PTNLD28-TUMOR_peak_79885	chr5	53999023	53999261	+	15.62227	NA	promoter-TSS (NR_104659)	promoter-TSS (NR_104659)	10	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_105131	chr9	108007820	108007993	+	15.62225	NA	intron (NM_080546, intron 1 of 15)	CpG	1012	NM_001286730	23446	Hs.573495	NM_022109	HPRD:16197	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 (choline transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_106067	chr9	127625698	127626217	+	15.61316	NA	Intergenic	Intergenic	-1717	NM_007209	11224	Hs.182825	NM_007209	HPRD:10200	RPL35	L35	ribosomal protein L35	protein-coding
19-PTNLD28-TUMOR_peak_102421	chr9	20678965	20679104	+	15.61160	NA	intron (NM_017794, intron 2 of 45)	L2a|LINE|L2	5715	NR_121601	101929548	Hs.668302	NR_121601		FOCAD-AS1	-	FOCAD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29228	chr13	115000273	115000572	+	15.61160	NA	promoter-TSS (NM_003903)	promoter-TSS (NM_003903)	60	NM_001078645	8881	Hs.374127	NM_003903	HPRD:04587	CDC16	ANAPC6|APC6|CUT9	cell division cycle 16	protein-coding
19-PTNLD28-TUMOR_peak_105614	chr9	117439766	117439968	+	15.61160	NA	intron (NM_001199233, intron 1 of 4)	intron (NM_001199233, intron 1 of 4)	4502	NM_001199233	100505478	Hs.200101	NM_001199233		LOC100505478	-	uncharacterized LOC100505478	protein-coding
19-PTNLD28-TUMOR_peak_30457	chr14	56168447	56168613	+	15.61160	NA	Intergenic	L2b|LINE|L2	-64433	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_58904	chr2	233916348	233916637	+	15.61160	NA	Intergenic	Intergenic	-8185	NM_001017915	3635	Hs.262886	NM_005541	HPRD:09033	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase, 145kDa	protein-coding
19-PTNLD28-TUMOR_peak_96993	chr8	7771071	7771230	+	15.61160	NA	Intergenic	Intergenic	-12709	NM_001193630	100132396	Hs.546691	NM_001193630	ENSG00000215356	ZNF705B	-	zinc finger protein 705B	protein-coding
19-PTNLD28-TUMOR_peak_87351	chr6	40387193	40387371	+	15.61160	NA	intron (NM_020737, intron 2 of 2)	MLT1H2|LTR|ERVL-MaLR	41119	NR_024015	732253	Hs.180197	NR_024015	ENSG00000204091	TDRG1	LINC00532	testis development related 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_63752	chr21	43776318	43776454	+	15.61160	NA	Intergenic	AluSx|SINE|Alu	-5178	NM_005423	7032	Hs.2979	NM_005423	HPRD:01682	TFF2	SML1|SP	trefoil factor 2	protein-coding
19-PTNLD28-TUMOR_peak_12096	chr10	13424919	13425065	+	15.61160	NA	Intergenic	Intergenic	-34694	NM_012247	22929	Hs.124027	NM_012247	HPRD:02944	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
19-PTNLD28-TUMOR_peak_16798	chr11	4117229	4117381	+	15.61082	NA	intron (NM_001033, intron 1 of 18)	AluJr4|SINE|Alu	1381	NM_001033	6240	Hs.445705	NM_001033	HPRD:01588	RRM1	R1|RIR1|RR1	ribonucleotide reductase M1	protein-coding
19-PTNLD28-TUMOR_peak_37716	chr16	49736942	49737110	+	15.61082	NA	intron (NM_015069, intron 3 of 7)	intron (NM_015069, intron 3 of 7)	119623	NM_015069	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_68248	chr3	50653496	50653680	+	15.61057	NA	promoter-TSS (NM_004635)	promoter-TSS (NM_004635)	-974	NM_004635	7867	Hs.234521	NM_004635	HPRD:03678	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_93537	chr7	76691969	76692117	+	15.60905	NA	Intergenic	Intergenic	23246	NR_028058	100132832	Hs.292996	NM_001129851		PMS2P9	PMS2L17|PMS2LP1|PMSR5	postmeiotic segregation increased 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_46979	chr19	7600256	7600616	+	15.60905	NA	promoter-TSS (NM_001166114)	promoter-TSS (NM_001166114)	-153	NM_001166114	10908	Hs.631863	NM_006702	HPRD:04432	PNPLA6	BNHS|NTE|NTEMND|SPG39|iPLA2delta|sws	patatin-like phospholipase domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_58767	chr2	231276318	231276779	+	15.59952	NA	Intergenic	Intergenic	-4323	NM_003113	6672	Hs.369056	NM_003113	HPRD:06844	SP100	lysp100b	SP100 nuclear antigen	protein-coding
19-PTNLD28-TUMOR_peak_27347	chr13	20534291	20534466	+	15.59952	NA	intron (NM_197968, intron 2 of 24)	intron (NM_197968, intron 2 of 24)	1404	NM_001190965	7750	Hs.507433	NM_003453	HPRD:03745	ZMYM2	FIM|MYM|RAMP|SCLL|ZNF198	zinc finger, MYM-type 2	protein-coding
19-PTNLD28-TUMOR_peak_19295	chr11	65344932	65345152	+	15.59718	NA	intron (NM_001099409, intron 1 of 18)	intron (NM_001099409, intron 1 of 18)	1533	NM_001099409	254102	Hs.502867	NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_85703	chr6	17471371	17471546	+	15.59535	NA	intron (NM_006366, intron 4 of 12)	intron (NM_006366, intron 4 of 12)	40038	NR_110855	101928491	Hs.622876	NR_110855		LOC101928491	-	uncharacterized LOC101928491	ncRNA
19-PTNLD28-TUMOR_peak_50746	chr2	676059	676256	+	15.59535	NA	intron (NM_152834, intron 1 of 4)	intron (NM_152834, intron 1 of 4)	1282	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_4971	chr1	94344090	94344246	+	15.59535	NA	intron (NM_014597, intron 1 of 6)	intron (NM_014597, intron 1 of 6)	594	NM_014597	30836	Hs.85769	NM_014597		DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_100532	chr8	124550846	124551075	+	15.59535	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	2533	NM_058229	114907	Hs.403933	NM_058229	HPRD:05966	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
19-PTNLD28-TUMOR_peak_94465	chr7	101459168	101459305	+	15.59535	NA	promoter-TSS (NM_001202543)	promoter-TSS (NM_001202543)	52	NM_001202545	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_8564	chr1	180511433	180511539	+	15.59535	NA	Intergenic	Intergenic	-16624	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_76330	chr4	96836354	96836460	+	15.59369	NA	Intergenic	L1PA2|LINE|L1	75168	NM_005390	5161	Hs.131361	NM_005390	HPRD:01531	PDHA2	PDHAL	pyruvate dehydrogenase (lipoamide) alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_34345	chr15	71668240	71668586	+	15.59369	NA	intron (NM_024817, intron 5 of 16)	MER117|DNA|hAT-Charlie	-171128	NM_001286429	79875	Hs.387057	NM_024817	HPRD:07835	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_17529	chr11	18929102	18929219	+	15.59369	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	27389	NM_147199	259249	Hs.711459	NM_147199	HPRD:06246	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS-related GPR, member X1	protein-coding
19-PTNLD28-TUMOR_peak_68763	chr3	64129132	64129319	+	15.59369	NA	intron (NM_198859, intron 7 of 7)	intron (NM_198859, intron 7 of 7)	40079	NR_046701	100874242	Hs.668874	NR_046701		PRICKLE2-AS2	-	PRICKLE2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_812	chr1	12021311	12021592	+	15.59369	NA	intron (NM_000302, intron 10 of 18)	AluJr|SINE|Alu	-18787	NM_001127660	9927	Hs.376681	NM_014874	HPRD:08495	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
19-PTNLD28-TUMOR_peak_286	chr1	3530067	3530240	+	15.59369	NA	Intergenic	Intergenic	-2094	NM_001409	1953	Hs.593645	NM_001409		MEGF6	EGFL3	multiple EGF-like-domains 6	protein-coding
19-PTNLD28-TUMOR_peak_65761	chr22	43017656	43017877	+	15.59369	NA	intron (NM_001171660, intron 8 of 8)	intron (NM_001171660, intron 8 of 8)	6515	NR_029422	267010	Hs.574857	NR_029422	ENSG00000270022	RNU12	RNU12-1|RNU12L|RNU12P|dJ222E13.7	RNA, U12 small nuclear	snRNA
19-PTNLD28-TUMOR_peak_89794	chr6	144011022	144011277	+	15.59369	NA	intron (NM_001100165, intron 1 of 11)	HAL1|LINE|L1	12047	NM_001100165	9749	Hs.102471	NM_014721	HPRD:16378	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_41983	chr17	45879820	45880000	+	15.59299	NA	Intergenic	Intergenic	19237	NM_145798	114881	Hs.463320	NM_017731	HPRD:09477	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
19-PTNLD28-TUMOR_peak_56775	chr2	166351191	166351363	+	15.59299	NA	5' UTR (NM_001172173, exon 2 of 7)	5' UTR (NM_001172173, exon 2 of 7)	25120	NM_001172173	80034	Hs.470479	NM_024969	HPRD:18144	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
19-PTNLD28-TUMOR_peak_60443	chr20	30396297	30396557	+	15.59299	NA	Intergenic	Intergenic	-10751	NM_033118	85366	Hs.86092	NM_033118	HPRD:05953	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_30905	chr14	68335784	68336074	+	15.59299	NA	intron (NM_133510, intron 5 of 10)	L1PA3|LINE|L1	49433	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_5130	chr1	99729842	99730319	+	15.59299	NA	exon (NM_001166252, exon 1 of 6)	exon (NM_001166252, exon 1 of 6)	232	NM_014839	9890	Hs.13245	NM_014839	HPRD:07425	LPPR4	LPR4|PHP1|PRG-1|PRG1	lipid phosphate phosphatase-related protein type 4	protein-coding
19-PTNLD28-TUMOR_peak_32944	chr15	32976470	32976684	+	15.59299	NA	intron (NM_003020, intron 3 of 5)	intron (NM_003020, intron 3 of 5)	-33628	NM_001191323	26585	Hs.40098	NM_013372	HPRD:07048	GREM1	CKTSF1B1|CRAC1|DAND2|DRM|GREMLIN|HMPS|IHG-2	gremlin 1, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_102242	chr9	14693262	14693649	+	15.59299	NA	promoter-TSS (NM_178566)	promoter-TSS (NM_178566)	25	NM_178566	340481	Hs.649522	NM_178566	HPRD:15716	ZDHHC21	9130404H11Rik|DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger, DHHC-type containing 21	protein-coding
19-PTNLD28-TUMOR_peak_86008	chr6	24939523	24939713	+	15.59299	NA	intron (NM_001286446, intron 1 of 13)	MER34A|LTR|ERV1	-3338	NM_001286445	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_34581	chr15	75867341	75867466	+	15.59299	NA	intron (NM_002833, intron 1 of 12)	AluY|SINE|Alu	4229	NM_002833	5780	Hs.445775	NM_002833	HPRD:02864	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding
19-PTNLD28-TUMOR_peak_48006	chr19	18181024	18181373	+	15.59299	NA	TTS (NM_153701)	TTS (NM_153701)	16615	NM_153701	3594	Hs.567294	NM_005535	HPRD:03363	IL12RB1	CD212|IL-12R-BETA1|IL12RB	interleukin 12 receptor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_6019	chr1	120674408	120674873	+	15.59253	NA	Intergenic	Intergenic	-62323	NM_024408	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_97978	chr8	29526911	29527066	+	15.59253	NA	Intergenic	Intergenic	78637	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_87423	chr6	41467013	41467263	+	15.59253	NA	Intergenic	Intergenic	-3044	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_36553	chr16	16434969	16435419	+	15.59143	NA	intron (NR_036447, intron 27 of 30)	intron (NR_036447, intron 27 of 30)	12032	NR_107060	102465908		NR_107060		MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
19-PTNLD28-TUMOR_peak_102710	chr9	33443058	33443291	+	15.59143	NA	intron (NM_004925, intron 3 of 5)	intron (NM_004925, intron 3 of 5)	4457	NM_004925	360	Hs.234642	NM_004925	HPRD:08970	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
19-PTNLD28-TUMOR_peak_58384	chr2	218846135	218846355	+	15.58902	NA	Intergenic	Intergenic	-37449	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_94595	chr7	103087688	103087862	+	15.58902	NA	intron (NR_110141, intron 2 of 3)	intron (NR_110141, intron 2 of 3)	-1151	NM_206885	375611	Hs.585146	NM_198999	HPRD:09224	SLC26A5	DFNB61|PRES	solute carrier family 26 (anion exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_6434	chr1	146975688	146975860	+	15.58420	NA	intron (NR_038423, intron 3 of 3)	intron (NR_038423, intron 3 of 3)	13925	NR_038423	100289211	Hs.323484	NR_038423		LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
19-PTNLD28-TUMOR_peak_15373	chr10	104473482	104473787	+	15.57606	NA	promoter-TSS (NM_178858)	promoter-TSS (NM_178858)	556	NM_004311	403	Hs.182215	NM_004311	HPRD:05260	ARL3	ARFL3	ADP-ribosylation factor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_30425	chr14	55578135	55578334	+	15.56914	NA	Intergenic	Intergenic	-17701	NM_001177388	3958	Hs.531081	NM_002306	HPRD:01090	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	lectin, galactoside-binding, soluble, 3	protein-coding
19-PTNLD28-TUMOR_peak_63804	chr21	44338338	44338527	+	15.56914	NA	Intergenic	Intergenic	25054	NM_021075	4731	Hs.473937	NM_021075		NDUFV3	CI-10k|CI-9KD	NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa	protein-coding
19-PTNLD28-TUMOR_peak_11102	chr1	235812317	235812496	+	15.56914	NA	intron (NM_001098721, intron 1 of 3)	CpG	887	NM_001098722	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_68099	chr3	49157008	49157140	+	15.56914	NA	intron (NM_001199160, intron 1 of 26)	intron (NM_001199160, intron 1 of 26)	1297	NM_001199160	10869	Hs.255596	NM_006677	HPRD:18278	USP19	ZMYND9	ubiquitin specific peptidase 19	protein-coding
19-PTNLD28-TUMOR_peak_86700	chr6	32008677	32008836	+	15.56908	NA	TTS (NM_032470).2	TTS (NM_032470).2	2663	NM_001128590	1589	Hs.654479	NM_000500	HPRD:01942	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450, family 21, subfamily A, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_60700	chr20	33871567	33872171	+	15.56686	NA	intron (NM_181468, intron 2 of 5)	intron (NM_181468, intron 2 of 5)	651	NM_001267810	3692	Hs.743992	NM_002212	HPRD:04221	EIF6	CAB|EIF3A|ITGB4BP|b(2)gcn|eIF-6|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding
19-PTNLD28-TUMOR_peak_18963	chr11	62162424	62162833	+	15.56686	NA	Intergenic	Intergenic	-23879	NM_003357	7356	Hs.523732	NM_003357	HPRD:01884	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
19-PTNLD28-TUMOR_peak_35572	chr15	102516966	102517254	+	15.56265	NA	TTS (NR_003659)	TTS (NR_003659)	2186	NR_034090	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9	pseudo
19-PTNLD28-TUMOR_peak_34670	chr15	78161724	78162023	+	15.55626	NA	Intergenic	Intergenic	-48631	NM_001301186	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96059	chr7	143216667	143216880	+	15.55626	NA	non-coding (NR_033897, exon 5 of 5)	non-coding (NR_033897, exon 5 of 5)	41807	NM_176883	259287	Hs.650648	NM_176883	HPRD:18151	TAS2R41	T2R41|T2R59	taste receptor, type 2, member 41	protein-coding
19-PTNLD28-TUMOR_peak_102289	chr9	16191852	16191991	+	15.55626	NA	Intergenic	Intergenic	61184	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_88018	chr6	53331277	53331439	+	15.55626	NA	Intergenic	Intergenic	78569	NM_001197115	2729	Hs.654465	NM_001498	HPRD:06032	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase, catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_109103	chrX	106960078	106960438	+	15.55626	NA	promoter-TSS (NM_001015881)	promoter-TSS (NM_001015881)	33	NM_004089	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_27554	chr13	27050112	27050681	+	15.55626	NA	Intergenic	Intergenic	-81444	NM_001291965	10810	Hs.618732	NM_006646	HPRD:05458	WASF3	Brush-1|SCAR3|WAVE3	WAS protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_32298	chr14	105270155	105270343	+	15.55454	NA	3' UTR (NM_001137601, exon 2 of 2)	3' UTR (NM_001137601, exon 2 of 2)	3316	NM_001137601	100128927	Hs.170853	NM_001137601		ZBTB42	ZNF925	zinc finger and BTB domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_54693	chr2	106669674	106669816	+	15.55258	NA	Intergenic	Intergenic	-12368	NM_032411	84417	Hs.43125	NM_032411	HPRD:13261	C2orf40	ECRG4	chromosome 2 open reading frame 40	protein-coding
19-PTNLD28-TUMOR_peak_109598	chrX	135992149	135992570	+	15.55258	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-29420	NM_001164803	27316	Hs.380118	NM_002139	HPRD:02186	RBMX	HNRNPG|HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_12144	chr10	14596903	14597056	+	15.55258	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	17209	NM_001282699	83641	Hs.446315	NM_031453	HPRD:12575	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
19-PTNLD28-TUMOR_peak_108561	chrX	64864878	64865021	+	15.55258	NA	Intergenic	Intergenic	-22562	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_22273	chr11	133511106	133511318	+	15.55258	NA	Intergenic	L1PA2|LINE|L1	-108809	NM_001012393	4978	Hs.4817	NM_002545	HPRD:07198	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
19-PTNLD28-TUMOR_peak_39388	chr16	88810284	88810440	+	15.55202	NA	non-coding (NR_120387, exon 2 of 3)	non-coding (NR_120387, exon 2 of 3)	1187	NR_120387	339059	Hs.449817	NR_120387	HPRD:08282	LOC339059	-	uncharacterized LOC339059	ncRNA
19-PTNLD28-TUMOR_peak_96691	chr7	156744428	156744539	+	15.54896	NA	intron (NM_138400, intron 1 of 10)	AluY|SINE|Alu	2066	NM_138400	64434	Hs.15825	NM_138400	HPRD:18485	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
19-PTNLD28-TUMOR_peak_34839	chr15	82592712	82592938	+	15.54826	NA	intron (NR_045529, intron 2 of 23)	intron (NR_045529, intron 2 of 23)	7204	NR_045529	390660	Hs.640255	NR_045529	ENSG00000259785	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_45314	chr18	36521235	36521392	+	15.54826	NA	Intergenic	LTR12F|LTR|ERV1	-735372	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_83343	chr5	153008632	153008883	+	15.54826	NA	intron (NM_001258020, intron 3 of 16)	intron (NM_001258020, intron 3 of 16)	137025	NM_001258022	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_3398	chr1	49120272	49120479	+	15.54826	NA	intron (NM_032785, intron 7 of 13)	intron (NM_032785, intron 7 of 13)	122172	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_72138	chr3	162437554	162437753	+	15.54826	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	583436	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_15816	chr10	117604170	117604381	+	15.54826	NA	intron (NM_207303, intron 27 of 28)	intron (NM_207303, intron 27 of 28)	427544	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_18086	chr11	36056563	36056707	+	15.54826	NA	intron (NM_174902, intron 1 of 5)	L2b|LINE|L2	24987	NR_039769	100616311		NR_039769		MIR3973	-	microRNA 3973	ncRNA
19-PTNLD28-TUMOR_peak_25251	chr12	70983872	70983984	+	15.54826	NA	exon (NM_001109754, exon 8 of 34)	exon (NM_001109754, exon 8 of 34)	19696	NM_002837	5787	Hs.434375	NM_002837	HPRD:01474	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
19-PTNLD28-TUMOR_peak_103097	chr9	39353071	39353210	+	15.54826	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2526	NM_001085452	647060	Hs.575677	NM_001040065	ENSG00000204848	SPATA31A1	C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2	SPATA31 subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_99187	chr8	73227832	73228100	+	15.54826	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-64097	NR_033867	392232	Hs.454043	NR_033867	ENSG00000250979	LOC392232	-	transient receptor potential cation channel, subfamily A, member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_37810	chr16	51914785	51914940	+	15.54826	NA	Intergenic	Intergenic	118432	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LOC101927364	-	uncharacterized LOC101927364	ncRNA
19-PTNLD28-TUMOR_peak_59157	chr2	239552776	239552959	+	15.54826	NA	Intergenic	Intergenic	-88727	NR_037809	151171	Hs.652076	NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
19-PTNLD28-TUMOR_peak_60823	chr20	35383089	35383236	+	15.54826	NA	intron (NM_001145316, intron 10 of 10)	intron (NM_001145316, intron 10 of 10)	-8621	NM_022477	57446	Hs.437338	NM_022477	HPRD:12007	NDRG3	-	NDRG family member 3	protein-coding
19-PTNLD28-TUMOR_peak_35119	chr15	89475842	89476081	+	15.54826	NA	Intergenic	Intergenic	-19298	NM_001114614	4240	Hs.3745	NM_005928	HPRD:03789	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule-EGF factor 8 protein	protein-coding
19-PTNLD28-TUMOR_peak_102851	chr9	35510935	35511340	+	15.54826	NA	intron (NM_014806, intron 1 of 11)	intron (NM_014806, intron 1 of 11)	21188	NR_052015	9853	Hs.493796	NM_014806	HPRD:18009	RUSC2	Iporin	RUN and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28594	chr13	80396751	80396906	+	15.54826	NA	Intergenic	L1PA3|LINE|L1	18307	NR_125785	102724076	Hs.208617	NR_125785		LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
19-PTNLD28-TUMOR_peak_99813	chr8	102575389	102575575	+	15.54826	NA	intron (NM_024915, intron 4 of 15)	intron (NM_024915, intron 4 of 15)	70814	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_51358	chr2	18011943	18012262	+	15.54826	NA	Intergenic	Intergenic	14316	NM_001105569	343930	Hs.705359	NM_001105569	ENSG00000151379	MSGN1	MSOG	mesogenin 1	protein-coding
19-PTNLD28-TUMOR_peak_67706	chr3	42122157	42122316	+	15.54826	NA	Intergenic	Intergenic	-10510	NM_001042646	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_10042	chr1	214731439	214731636	+	15.54826	NA	Intergenic	Intergenic	-6513	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_95120	chr7	128163428	128163623	+	15.54255	NA	Intergenic	Intergenic	46742	NM_018396	55798	Hs.433213	NM_018396	HPRD:09705	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
19-PTNLD28-TUMOR_peak_5635	chr1	113749185	113749368	+	15.54239	NA	promoter-TSS (NR_038846)	promoter-TSS (NR_038846)	-401	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_20171	chr11	76499824	76500025	+	15.54239	NA	intron (NM_015516, intron 1 of 1)	intron (NM_015516, intron 1 of 1)	5639	NM_015516	25987	Hs.8361	NM_015516	HPRD:12152	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19-PTNLD28-TUMOR_peak_27856	chr13	37107918	37108293	+	15.54239	NA	Intergenic	MER89|LTR|ERV1	101696	NM_003914	8900	Hs.417050	NM_003914	HPRD:04946	CCNA1	CT146	cyclin A1	protein-coding
19-PTNLD28-TUMOR_peak_70777	chr3	129898261	129898459	+	15.54239	NA	Intergenic	HERVS71-int|LTR|ERV1	-33303	NR_027898	646300	Hs.170475	NR_027898		COL6A4P2	COL6A4	collagen, type VI, alpha 4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_843	chr1	12507373	12507608	+	15.54239	NA	intron (NM_015378, intron 65 of 69)	MIR|SINE|MIR	-59810	NR_003025	677885	Hs.658450	NR_003025		SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
19-PTNLD28-TUMOR_peak_90731	chr7	361054	361268	+	15.54206	NA	Intergenic	MIRb|SINE|MIR	31025	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
19-PTNLD28-TUMOR_peak_11109	chr1	235869587	235869758	+	15.54206	NA	intron (NM_001301365, intron 44 of 52)	MER39|LTR|ERV1	-55618	NM_001098721	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_43519	chr17	74099139	74099687	+	15.54206	NA	intron (NM_001282313, intron 1 of 18)	intron (NM_001282313, intron 1 of 18)	239	NM_001282313	23265	Hs.514496	NM_015219	HPRD:16292	EXOC7	2-5-3p|EX070|EXO70|EXOC1|Exo70p|YJL085W	exocyst complex component 7	protein-coding
19-PTNLD28-TUMOR_peak_35831	chr16	2661929	2662157	+	15.54206	NA	intron (NR_015441, intron 2 of 3)	intron (NR_015441, intron 2 of 3)	8658	NR_015441	652276	Hs.720448	NR_015441	ENSG00000215154	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_84099	chr5	173281223	173281490	+	15.54206	NA	Intergenic	Intergenic	-33975	NM_030627	80315	Hs.127126	NM_030627	HPRD:16746	CPEB4	-	cytoplasmic polyadenylation element binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_60163	chr20	22443750	22444081	+	15.54206	NA	Intergenic	Intergenic	-42634	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
19-PTNLD28-TUMOR_peak_87367	chr6	40758787	40759147	+	15.54206	NA	Intergenic	Intergenic	-203841	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_63892	chr21	45202688	45202863	+	15.54206	NA	Intergenic	Intergenic	-6519	NM_000100	1476	Hs.695	NM_000100		CSTB	CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B (stefin B)	protein-coding
19-PTNLD28-TUMOR_peak_69856	chr3	112930316	112930481	+	15.54138	NA	promoter-TSS (NM_033254)	promoter-TSS (NM_033254)	-977	NM_033254	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_92244	chr7	44076050	44076190	+	15.53557	NA	intron (NR_024116, intron 5 of 8)	intron (NR_024116, intron 5 of 8)	-2528	NR_072981	255031	Hs.633978	NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
19-PTNLD28-TUMOR_peak_16330	chr10	134235071	134235275	+	15.53477	NA	Intergenic	Intergenic	-23541	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_87827	chr6	46953785	46953958	+	15.53425	NA	Intergenic	AluJb|SINE|Alu	-31196	NM_015234	221395	Hs.362806	NM_015234	HPRD:11010	GPR116	KPG_001	G protein-coupled receptor 116	protein-coding
19-PTNLD28-TUMOR_peak_72713	chr3	183411787	183412116	+	15.53425	NA	Intergenic	L2|LINE|L2	-3655	NM_018023	55689	Hs.632575	NM_018023	HPRD:07652	YEATS2	-	YEATS domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_31750	chr14	93153323	93153665	+	15.53217	NA	intron (NM_024832, intron 9 of 9)	CpG	61553	NM_001008530	5641	Hs.18069	NM_005606	HPRD:04017	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
19-PTNLD28-TUMOR_peak_65536	chr22	39239319	39239601	+	15.53217	NA	exon (NM_014293, exon 1 of 5)	exon (NM_014293, exon 1 of 5)	557	NM_014293	23467	Hs.91622	NM_014293	HPRD:14837	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
19-PTNLD28-TUMOR_peak_98891	chr8	57906363	57906833	+	15.53217	NA	promoter-TSS (NM_017813)	promoter-TSS (NM_017813)	-168	NM_017813	54928	Hs.438689	NM_017813	HPRD:06531	IMPAD1	GPAPP|IMP 3|IMP-3|IMPA3	inositol monophosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_45268	chr18	34889132	34889262	+	15.53217	NA	intron (NM_001025089, intron 3 of 11)	MIRb|SINE|MIR	256803	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_21830	chr11	123692879	123693017	+	15.53217	NA	Intergenic	L1MCc|LINE|L1	-15891	NM_001005325	390261	Hs.557924	NM_001005325	HPRD:15065	OR6M1	OR11-271	olfactory receptor, family 6, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11447	chr1	245462147	245462391	+	15.53217	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	143982	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_66593	chr3	11238169	11238420	+	15.53217	NA	intron (NM_001098212, intron 1 of 1)	intron (NM_001098212, intron 1 of 1)	-29375	NM_001098211	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_95157	chr7	128529370	128529515	+	15.53217	NA	TTS (NM_199349)	TTS (NM_199349)	21331	NM_001135914	375616	Hs.371746	NM_199349		KCP	CRIM2|KCP1|NET67	kielin/chordin-like protein	protein-coding
19-PTNLD28-TUMOR_peak_74807	chr4	25591928	25592093	+	15.53217	NA	Intergenic	MER51B|LTR|ERV1	-65425	NM_001177998	10568	Hs.479372	NM_006424	HPRD:07251	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb	solute carrier family 34 (type II sodium/phosphate contransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_53101	chr2	65065989	65066338	+	15.53217	NA	Intergenic	Intergenic	24602	NR_110224	101927438	Hs.580313	NR_110224		LOC101927438	-	uncharacterized LOC101927438	ncRNA
19-PTNLD28-TUMOR_peak_41517	chr17	40474897	40475071	+	15.53217	NA	intron (NM_139276, intron 20 of 23)	intron (NM_139276, intron 20 of 23)	34910	NM_001288720	6776	Hs.437058	NM_003152	HPRD:03301	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
19-PTNLD28-TUMOR_peak_75886	chr4	79565994	79566113	+	15.52967	NA	Intergenic	Intergenic	-1095	NR_038308	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_98962	chr8	61861484	61861700	+	15.52967	NA	Intergenic	Intergenic	18715	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_33940	chr15	63891606	63891983	+	15.52967	NA	intron (NM_203373, intron 1 of 1)	intron (NM_203373, intron 1 of 1)	1232	NR_034080	100130855	Hs.631163	NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_104359	chr9	90209698	90209903	+	15.52963	NA	intron (NM_001288729, intron 2 of 25)	intron (NM_001288729, intron 2 of 25)	96350	NM_001288729	1612	Hs.380277	NM_004938	HPRD:02902	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_90691	chr6	171000745	171000930	+	15.52963	NA	Intergenic	Intergenic	-107057	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_40200	chr17	10521519	10521670	+	15.52627	NA	intron (NR_125367, intron 10 of 10)	intron (NR_125367, intron 10 of 10)	39032	NM_002470	4621	Hs.440895	NM_002470	HPRD:01172	MYH3	HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin, heavy chain 3, skeletal muscle, embryonic	protein-coding
19-PTNLD28-TUMOR_peak_102126	chr9	6852333	6852539	+	15.52627	NA	intron (NM_001146696, intron 5 of 17)	MIR3|SINE|MIR	94795	NM_015061	23081	Hs.709425	NM_015061	HPRD:12016	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
19-PTNLD28-TUMOR_peak_91405	chr7	17448263	17448448	+	15.52627	NA	intron (NR_110015, intron 1 of 2)	intron (NR_110015, intron 1 of 2)	33814	NR_110015	102659288	Hs.559488	NR_110014		LOC102659288	-	uncharacterized LOC102659288	ncRNA
19-PTNLD28-TUMOR_peak_97651	chr8	22941789	22941965	+	15.52627	NA	promoter-TSS (NR_046173)	promoter-TSS (NR_046173)	9	NR_046173	254896	Hs.735240	NR_046173		LOC254896	-	uncharacterized LOC254896	ncRNA
19-PTNLD28-TUMOR_peak_4567	chr1	84944876	84945044	+	15.52627	NA	promoter-TSS (NM_025065)	promoter-TSS (NM_025065)	40	NM_025065	80135	Hs.481202	NM_025065		RPF1	BXDC5	ribosome production factor 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55150	chr2	114779996	114780196	+	15.52627	NA	Intergenic	MLT2C2|LTR|ERVL	-42535	NR_034130	100499194	Hs.662336	NR_034130		LOC100499194	-	uncharacterized LOC100499194	ncRNA
19-PTNLD28-TUMOR_peak_21659	chr11	120555727	120555847	+	15.52627	NA	intron (NM_001282470, intron 2 of 19)	intron (NM_001282470, intron 2 of 19)	120592	NM_001282473	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_84007	chr5	172234273	172234464	+	15.52627	NA	Intergenic	Intergenic	-26855	NM_001031711	57222	Hs.509163	NM_020462	HPRD:13836	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
19-PTNLD28-TUMOR_peak_8117	chr1	169750610	169750776	+	15.52627	NA	Intergenic	MER4D|LTR|ERV1	13368	NM_033418	92342	Hs.33922	NM_033418	HPRD:14713	METTL18	AsTP2|C1orf156|HPM1	methyltransferase like 18	protein-coding
19-PTNLD28-TUMOR_peak_56296	chr2	151377820	151378070	+	15.52627	NA	Intergenic	Intergenic	-33736	NM_001254738	390	Hs.6838	NM_005168	HPRD:04233	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
19-PTNLD28-TUMOR_peak_85142	chr6	7204225	7204487	+	15.52627	NA	intron (NM_001003698, intron 6 of 11)	intron (NM_001003698, intron 6 of 11)	96270	NM_001003699	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46323	chr18	74514091	74514399	+	15.52627	NA	intron (NR_040024, intron 2 of 2)	CpG	20006	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	ncRNA
19-PTNLD28-TUMOR_peak_100645	chr8	126130725	126131018	+	15.52627	NA	intron (NM_173685, intron 3 of 7)	intron (NM_173685, intron 3 of 7)	26788	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61728	chr20	48428570	48428722	+	15.52576	NA	promoter-TSS (NM_015266)	promoter-TSS (NM_015266)	-604	NR_048538	23315	Hs.444202	NM_015266	HPRD:18062	SLC9A8	NHE-8|NHE8	solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8	protein-coding
19-PTNLD28-TUMOR_peak_96826	chr8	66375	66536	+	15.51518	NA	Intergenic	Intergenic	50569	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_41904	chr17	44803607	44803775	+	15.51518	NA	intron (NR_040116, intron 14 of 19)	intron (NR_040116, intron 14 of 19)	92435	NM_030753	7473	Hs.445884	NM_030753	HPRD:01318	WNT3	INT4	wingless-type MMTV integration site family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_7846	chr1	164620917	164621113	+	15.51009	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	92418	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_59324	chr2	242672104	242672241	+	15.51009	NA	Intergenic	LTR13|LTR|ERVK	-1822	NM_001287249	728294	Hs.516813	NM_152783	HPRD:14502	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_80842	chr5	77591597	77591751	+	15.51009	NA	Intergenic	Intergenic	-1095	NM_001271769	8546	Hs.532091	NM_003664	HPRD:04551	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor-related protein complex 3, beta 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_64184	chr22	17024311	17024554	+	15.51009	NA	Intergenic	Intergenic	49268	NM_014406	150160	Hs.128342	NM_014406	HPRD:16708	CCT8L2	CESK1	chaperonin containing TCP1, subunit 8 (theta)-like 2	protein-coding
19-PTNLD28-TUMOR_peak_24163	chr12	50261455	50261640	+	15.51009	NA	3' UTR (NM_012306, exon 12 of 12)	3' UTR (NM_012306, exon 12 of 12)	-24635	NM_181708	144233	Hs.142736	NM_181708		BCDIN3D	-	BCDIN3 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_14991	chr10	96163404	96163646	+	15.50656	NA	intron (NM_015188, intron 1 of 12)	intron (NM_015188, intron 1 of 12)	1339	NM_015188	23232	Hs.500598	NM_015188	ENSG00000108239	TBC1D12	-	TBC1 domain family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_72967	chr3	186620012	186620284	+	15.50656	NA	Intergenic	AluJb|SINE|Alu	-28167	NM_173216	6480	Hs.207459	NM_003032	HPRD:00184	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	protein-coding
19-PTNLD28-TUMOR_peak_79602	chr5	39075046	39075245	+	15.50656	NA	promoter-TSS (NM_152756)	promoter-TSS (NM_152756)	-635	NM_001285439	253260	Hs.407926	NM_152756	HPRD:10682	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR, complex 2	protein-coding
19-PTNLD28-TUMOR_peak_6233	chr1	144967177	144967502	+	15.50656	NA	intron (NM_001002810, intron 1 of 3)	intron (NM_001002810, intron 1 of 3)	27694	NM_001002810	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_99841	chr8	103145438	103145578	+	15.50151	NA	Intergenic	L1PA3|LINE|L1	7848	NR_049859	100847001		NR_049859	miRBase:MI0019280	MIR5680	-	microRNA 5680	ncRNA
19-PTNLD28-TUMOR_peak_39752	chr17	3641912	3642207	+	15.50151	NA	intron (NM_002208, intron 20 of 30)	intron (NM_002208, intron 20 of 30)	14862	NM_031965	83903	Hs.534059	NM_031965	HPRD:17083	GSG2	HASPIN	germ cell associated 2 (haspin)	protein-coding
19-PTNLD28-TUMOR_peak_60543	chr20	31687780	31688024	+	15.50151	NA	intron (NM_182519, intron 11 of 15)	intron (NM_182519, intron 11 of 15)	18584	NM_182519	149954	Hs.38961	NM_182519	HPRD:16645	BPIFB4	C20orf186|LPLUNC4|RY2G5|dJ726C3.5	BPI fold containing family B, member 4	protein-coding
19-PTNLD28-TUMOR_peak_28925	chr13	104968046	104968233	+	15.50151	NA	Intergenic	MIRb|SINE|MIR	-1033291	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_80914	chr5	79477571	79477773	+	15.50151	NA	intron (NM_178276, intron 2 of 12)	LTR62|LTR|ERVL	74226	NM_001174072	256987	Hs.288232	NM_178276	HPRD:12828	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19-PTNLD28-TUMOR_peak_12493	chr10	25252732	25252847	+	15.50151	NA	Intergenic	Intergenic	-11216	NM_001282786	56952	Hs.405619	NM_020200	HPRD:17917	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4660	chr1	87150174	87150362	+	15.50151	NA	Intergenic	L1HS|LINE|L1	-19985	NM_016009	51100	Hs.136309	NM_016009	HPRD:15333	SH3GLB1	Bif-1|PPP1R70|dJ612B15.2	SH3-domain GRB2-like endophilin B1	protein-coding
19-PTNLD28-TUMOR_peak_57776	chr2	201727310	201727545	+	15.49868	NA	intron (NR_027855, intron 1 of 11)	intron (NR_027855, intron 1 of 11)	1857	NM_001162407	1195	Hs.433732	NM_004071	HPRD:09058	CLK1	CLK|CLK/STY|STY	CDC-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_40263	chr17	14205928	14206126	+	15.49868	NA	intron (NM_006041, intron 1 of 1)	CpG	-1030	NR_026880	84815	Hs.597458	NM_032729		MGC12916	-	uncharacterized protein MGC12916	ncRNA
19-PTNLD28-TUMOR_peak_77550	chr4	150999225	150999602	+	15.49641	NA	promoter-TSS (NR_036614)	promoter-TSS (NR_036614)	-13	NM_001040260	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_103354	chr9	46325218	46325359	+	15.49641	NA	Intergenic	MER115|DNA|hAT-Tip100	62085	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_2275	chr1	34845631	34845815	+	15.49641	NA	Intergenic	L2a|LINE|L2	203170	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_9748	chr1	206654640	206654788	+	15.49199	NA	intron (NM_001193321, intron 12 of 20)	intron (NM_001193321, intron 12 of 20)	6568	NR_106919	102466202		NR_106919		MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
19-PTNLD28-TUMOR_peak_16762	chr11	3585059	3585208	+	15.49199	NA	Intergenic	Intergenic	-62557	NR_002720	7221	Hs.131910	NR_002720	ENSG00000182048	TRPC2	-	transient receptor potential cation channel, subfamily C, member 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_55325	chr2	120989965	120990178	+	15.49199	NA	Intergenic	Intergenic	-9087	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
19-PTNLD28-TUMOR_peak_77463	chr4	147162671	147163012	+	15.49199	NA	Intergenic	Intergenic	66006	NM_007080	11157	Hs.190520	NM_007080	HPRD:06286	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_72918	chr3	186079800	186080145	+	15.49199	NA	promoter-TSS (NM_001346)	promoter-TSS (NM_001346)	51	NM_001080745	1608	Hs.683449	NM_001346	HPRD:03510	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase, gamma 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_96326	chr7	150723089	150723239	+	15.49168	NA	Intergenic	Intergenic	-1578	NM_173681	285973	Hs.707300	NM_173681	HPRD:08253	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
19-PTNLD28-TUMOR_peak_90055	chr6	151603011	151603271	+	15.49013	NA	intron (NM_005100, intron 2 of 4)	intron (NM_005100, intron 2 of 4)	42007	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_46444	chr18	77771900	77772042	+	15.49013	NA	Intergenic	LTR14C|LTR|ERVK	-22375	NM_001171967	79863	Hs.728931	NM_024805		RBFA	C18orf22|HsT169	ribosome binding factor A (putative)	protein-coding
19-PTNLD28-TUMOR_peak_54339	chr2	97539942	97540453	+	15.48999	NA	Intergenic	Intergenic	-4462	NM_017789	54910	Hs.516220	NM_017789	HPRD:07257	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding
19-PTNLD28-TUMOR_peak_24158	chr12	50221298	50221581	+	15.47817	NA	promoter-TSS (NR_027500)	promoter-TSS (NR_027500)	769	NM_001037806	57701	Hs.143067	NM_001037806	ENSG00000167566	NCKAP5L	KIAA1602	NCK-associated protein 5-like	protein-coding
19-PTNLD28-TUMOR_peak_70512	chr3	126700994	126701821	+	15.47817	NA	Intergenic	CpG	-6030	NM_032242	5361	Hs.432329	NM_032242	HPRD:11868	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
19-PTNLD28-TUMOR_peak_50653	chr1_gl000192_random	90563	90704	+	15.47253	NA	Intergenic	L1PA16|LINE|L1	316877	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_103181	chr9	41641392	41641516	+	15.47253	NA	Intergenic	Intergenic	-31910	NR_003528	401509	Hs.449445	NM_001032297	ENSG00000198416	ZNF658B	-	zinc finger protein 658B, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91955	chr7	33881282	33881492	+	15.47253	NA	Intergenic	L2c|LINE|L2	-63136	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_78945	chr5	11725069	11725343	+	15.47253	NA	intron (NM_001288717, intron 2 of 20)	intron (NM_001288717, intron 2 of 20)	-136177	NM_001288716	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_22279	chr11	133679473	133679768	+	15.47253	NA	intron (NR_120444, intron 2 of 2)	intron (NR_120444, intron 2 of 2)	651	NR_120444	646522	Hs.560000	NR_120444		LOC646522	-	uncharacterized LOC646522	ncRNA
19-PTNLD28-TUMOR_peak_24917	chr12	63019055	63019318	+	15.47253	NA	Intergenic	Intergenic	21720	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_69968	chr3	115769958	115770222	+	15.47253	NA	intron (NM_002338, intron 2 of 6)	intron (NM_002338, intron 2 of 6)	-308781	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	uncharacterized LOC101926903	ncRNA
19-PTNLD28-TUMOR_peak_29824	chr14	34407926	34408119	+	15.47253	NA	intron (NM_022073, intron 1 of 4)	intron (NM_022073, intron 1 of 4)	12262	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_97808	chr8	27089326	27089801	+	15.47253	NA	Intergenic	Intergenic	26393	NM_001283053	81551	Hs.201058	NM_030795	HPRD:18120	STMN4	RB3	stathmin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_24068	chr12	48947532	48948029	+	15.47253	NA	Intergenic	L1PA4|LINE|L1	16049	NM_002289	3906	Hs.72938	NM_002289	HPRD:01024	LALBA	-	lactalbumin, alpha-	protein-coding
19-PTNLD28-TUMOR_peak_75825	chr4	78111357	78111510	+	15.47253	NA	Intergenic	Intergenic	33076	NM_004354	901	Hs.740456	NM_004354	HPRD:04438	CCNG2	-	cyclin G2	protein-coding
19-PTNLD28-TUMOR_peak_23351	chr12	20821155	20821368	+	15.47253	NA	intron (NM_001244683, intron 14 of 14)	L1PA3|LINE|L1	-27028	NM_001145945	53919	Hs.47261	NM_017435	HPRD:08342	SLCO1C1	OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14	solute carrier organic anion transporter family, member 1C1	protein-coding
19-PTNLD28-TUMOR_peak_103106	chr9	39496374	39496498	+	15.47253	NA	Intergenic	Intergenic	-31910	NR_003528	401509	Hs.449445	NM_001032297	ENSG00000198416	ZNF658B	-	zinc finger protein 658B, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_40195	chr17	10147441	10147812	+	15.47253	NA	Intergenic	L3|LINE|CR1	-45758	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_28697	chr13	95024567	95024745	+	15.47253	NA	intron (NM_005708, intron 6 of 8)	L1PA3|LINE|L1	107280	NM_001922	1638	Hs.301865	NM_001922	HPRD:01864	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
19-PTNLD28-TUMOR_peak_24542	chr12	54595238	54595406	+	15.47253	NA	Intergenic	Intergenic	-12544	NR_045039	23583	Hs.632721	NM_014311	HPRD:06376	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
19-PTNLD28-TUMOR_peak_80648	chr5	73092648	73092804	+	15.47253	NA	intron (NM_001080479, intron 9 of 36)	intron (NM_001080479, intron 9 of 36)	-16617	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_85463	chr6	13214300	13214431	+	15.47253	NA	intron (NM_030948, intron 8 of 14)	U1|snRNA|snRNA	81453	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_105275	chr9	111539243	111539426	+	15.47253	NA	Intergenic	MER72|LTR|ERV1	78941	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_45279	chr18	34988942	34989104	+	15.47253	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	156977	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_106204	chr9	130590741	130590910	+	15.47179	NA	intron (NM_001278138, intron 3 of 14)	intron (NM_001278138, intron 3 of 14)	18621	NM_001278138	2022	Hs.76753	NM_000118	HPRD:00565	ENG	END|HHT1|ORW1	endoglin	protein-coding
19-PTNLD28-TUMOR_peak_48597	chr19	34761060	34761401	+	15.47179	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	15774	NM_014686	9710	Hs.330073	NM_014686	HPRD:11077	KIAA0355	-	KIAA0355	protein-coding
19-PTNLD28-TUMOR_peak_15213	chr10	101691104	101691291	+	15.47179	NA	intron (NR_024130, intron 2 of 4)	intron (NR_024130, intron 2 of 4)	4231	NR_024130	100188954	Hs.656104	NR_024130		DNMBP-AS1	NCRNA00093|bA287G8.2	DNMBP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61534	chr20	46354165	46354402	+	15.47179	NA	intron (NM_198596, intron 3 of 20)	MER20B|DNA|hAT-Charlie	60525	NM_018837	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_81950	chr5	126542069	126542267	+	15.47179	NA	Intergenic	Intergenic	-84288	NM_001256545	84466	Hs.438709	NM_032446	HPRD:14384	MEGF10	EMARDD	multiple EGF-like-domains 10	protein-coding
19-PTNLD28-TUMOR_peak_27024	chr12	125332084	125332534	+	15.47179	NA	intron (NM_001082959, intron 1 of 11)	intron (NM_001082959, intron 1 of 11)	16210	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_37821	chr16	52384103	52384516	+	15.47179	NA	Intergenic	Intergenic	196497	NM_001080430	27324	Hs.460789	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
19-PTNLD28-TUMOR_peak_6958	chr1	153446835	153447157	+	15.47179	NA	Intergenic	Intergenic	-13859	NM_002963	6278	Hs.112408	NM_002963	HPRD:02645	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
19-PTNLD28-TUMOR_peak_76034	chr4	84140886	84141202	+	15.47179	NA	Intergenic	Intergenic	65023	NM_015697	27235	Hs.144304	NM_015697	HPRD:13062	COQ2	CL640|COQ10D1|MSA1	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_8247	chr1	172955841	172955966	+	15.47179	NA	Intergenic	L1PA2|LINE|L1	64200	NM_005092	8995	Hs.248197	NM_005092		TNFSF18	AITRL|GITRL|TL6|hGITRL	tumor necrosis factor (ligand) superfamily, member 18	protein-coding
19-PTNLD28-TUMOR_peak_28784	chr13	99037197	99037375	+	15.47179	NA	intron (NM_005766, intron 7 of 26)	intron (NM_005766, intron 7 of 26)	137093	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_102778	chr9	34430900	34431226	+	15.47179	NA	intron (NM_001184945, intron 1 of 5)	intron (NM_001184945, intron 1 of 5)	27505	NM_147202	203259	Hs.493771	NM_147202	HPRD:12950	FAM219A	C9orf25|bA573M23.5	family with sequence similarity 219, member A	protein-coding
19-PTNLD28-TUMOR_peak_1070	chr1	16514275	16514476	+	15.46927	NA	Intergenic	Intergenic	24729	NM_153213	128272	Hs.591532	NM_153213	HPRD:10659	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding
19-PTNLD28-TUMOR_peak_69139	chr3	75552668	75552790	+	15.46927	NA	Intergenic	HERVS71-int|LTR|ERV1	-68463	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86, member D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_70050	chr3	119419469	119419666	+	15.46785	NA	Intergenic	Intergenic	-2302	NM_033364	89876	Hs.341906	NM_033364	HPRD:10782	MAATS1	AAT1|AAT1alpha|C3orf15|CaM-IP2|SPATA26	MYCBP-associated, testis expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_53626	chr2	75835525	75835781	+	15.46759	NA	Intergenic	Intergenic	-38256	NM_014763	9801	Hs.44024	NM_014763		MRPL19	L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15	mitochondrial ribosomal protein L19	protein-coding
19-PTNLD28-TUMOR_peak_49345	chr19	45351423	45351616	+	15.46395	NA	intron (NM_002856, intron 1 of 5)	intron (NM_002856, intron 1 of 5)	2126	NM_001042724	5819	Hs.655455	NM_002856	HPRD:02879	PVRL2	CD112|HVEB|PRR2|PVRR2	poliovirus receptor-related 2 (herpesvirus entry mediator B)	protein-coding
19-PTNLD28-TUMOR_peak_78267	chr4	184729294	184729534	+	15.45914	NA	Intergenic	Intergenic	-97095	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_97345	chr8	17650854	17651047	+	15.45914	NA	intron (NM_001001924, intron 1 of 14)	intron (NM_001001924, intron 1 of 14)	7476	NM_001001924	57509	Hs.7946	NM_020749	HPRD:11376	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_67531	chr3	37254640	37254819	+	15.45914	NA	Intergenic	Intergenic	-29953	NM_002078	2803	Hs.344151	NM_002078	HPRD:03941	GOLGA4	GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
19-PTNLD28-TUMOR_peak_28499	chr13	76268985	76269206	+	15.45914	NA	intron (NM_005358, intron 2 of 29)	intron (NM_005358, intron 2 of 29)	-58965	NR_120412	101927155	Hs.564550	NR_120410	ENSG00000261105	LMO7-AS1	UCHL3-AS1	LMO7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63415	chr21	37792348	37792530	+	15.45914	NA	Intergenic	Intergenic	34750	NM_005441	8208	Hs.75238	NM_005441		CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1, subunit B (p60)	protein-coding
19-PTNLD28-TUMOR_peak_85682	chr6	16781672	16781849	+	15.45914	NA	Intergenic	Intergenic	-20039	NM_000332	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_1592	chr1	25559685	25559856	+	15.45073	NA	promoter-TSS (NM_015484)	promoter-TSS (NM_015484)	-757	NM_207170	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA-splicing factor	protein-coding
19-PTNLD28-TUMOR_peak_73554	chr3	195919453	195919776	+	15.45073	NA	Intergenic	G-rich|Low_complexity|Low_complexity	18686	NM_001039617	131540	Hs.111591	NM_144637	HPRD:15714	ZDHHC19	DHHC19	zinc finger, DHHC-type containing 19	protein-coding
19-PTNLD28-TUMOR_peak_3333	chr1	48150894	48151125	+	15.44715	NA	Intergenic	Intergenic	249320	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_2842	chr1	41933892	41934132	+	15.44715	NA	Intergenic	Intergenic	16332	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_12996	chr10	38383599	38383838	+	15.44232	NA	intron (NM_003421, intron 1 of 6)	CpG	454	NM_001007094	7587	Hs.292575	NM_003421	HPRD:18508	ZNF37A	KOX21|ZNF37	zinc finger protein 37A	protein-coding
19-PTNLD28-TUMOR_peak_93420	chr7	75278862	75279195	+	15.44232	NA	intron (NM_005338, intron 1 of 30)	intron (NM_005338, intron 1 of 30)	89262	NM_005338	3092	Hs.329266	NM_005338	HPRD:03461	HIP1	HIP-I|ILWEQ	huntingtin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_30664	chr14	61980721	61980890	+	15.44232	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	56107	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_24079	chr12	49189689	49189866	+	15.44232	NA	Intergenic	Intergenic	6418	NR_110020	100506125	Hs.306727	NR_110019	ENSG00000257660	LOC100506125	-	uncharacterized LOC100506125	ncRNA
19-PTNLD28-TUMOR_peak_42114	chr17	47338391	47338611	+	15.44185	NA	Intergenic	Intergenic	12896	NR_034161	124871	Hs.446890	NM_001007529	HPRD:16950	FLJ40194	-	uncharacterized FLJ40194	ncRNA
19-PTNLD28-TUMOR_peak_66444	chr3	9295248	9295434	+	15.44185	NA	Intergenic	Intergenic	-3972	NM_001033117	9901	Hs.654743	NM_014850	HPRD:12108	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
19-PTNLD28-TUMOR_peak_72663	chr3	182510726	182511175	+	15.44185	NA	promoter-TSS (NM_014616)	promoter-TSS (NM_014616)	-341	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_6959	chr1	153456262	153456496	+	15.43796	NA	Intergenic	Intergenic	-23242	NM_002963	6278	Hs.112408	NM_002963	HPRD:02645	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
19-PTNLD28-TUMOR_peak_105835	chr9	123638255	123639034	+	15.43796	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	962	NM_001286843	26147	Hs.460124	NM_015651	HPRD:17846	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
19-PTNLD28-TUMOR_peak_86695	chr6	31975942	31976099	+	15.43791	NA	TTS (NM_032470)	TTS (NM_032470)	2607	NR_040090	1590	Hs.654479	NR_040090	ENSG00000204338	CYP21A1P	CYP21A|CYP21P|P450c21A	cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95896	chr7	141374548	141374775	+	15.43786	NA	intron (NM_001080392, intron 3 of 8)	LTR84b|LTR|ERVL	27292	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding
19-PTNLD28-TUMOR_peak_29198	chr13	114563601	114564035	+	15.43786	NA	intron (NM_000820, intron 2 of 14)	intron (NM_000820, intron 2 of 14)	3228	NM_000820	2621	Hs.646346	NM_000820	HPRD:02705	GAS6	AXLLG|AXSF	growth arrest-specific 6	protein-coding
19-PTNLD28-TUMOR_peak_35882	chr16	3035696	3036311	+	15.43724	NA	Intergenic	Intergenic	-3052	NR_033861	283875	Hs.620489	NR_033861	ENSG00000262152	LINC00514	LA16c-380H5.1	long intergenic non-protein coding RNA 514	ncRNA
19-PTNLD28-TUMOR_peak_30880	chr14	68000473	68000669	+	15.43724	NA	intron (NM_020715, intron 1 of 28)	intron (NM_020715, intron 1 of 28)	563	NM_020715	57475	Hs.594236	NM_020715	HPRD:17862	PLEKHH1	-	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_28304	chr13	52585822	52586169	+	15.42562	NA	promoter-TSS (NM_000053)	promoter-TSS (NM_000053)	-365	NM_000053	540	Hs.492280	NM_000053	HPRD:06050	ATP7B	PWD|WC1|WD|WND	ATPase, Cu++ transporting, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_75612	chr4	71704925	71705367	+	15.42562	NA	promoter-TSS (NM_001098477)	promoter-TSS (NM_001098477)	74	NM_001098477	2926	Hs.309763	NM_002092	HPRD:07276	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
19-PTNLD28-TUMOR_peak_40915	chr17	29152875	29153032	+	15.42562	NA	Intergenic	Intergenic	-1175	NR_073118	51379	Hs.649372	NM_015986	HPRD:16757	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor-like factor 3	protein-coding
19-PTNLD28-TUMOR_peak_58217	chr2	213784073	213784304	+	15.41165	NA	Intergenic	Intergenic	-6793	NR_039935	100616267		NR_039935	miRBase:MI0017419	MIR4776-1	-	microRNA 4776-1	ncRNA
19-PTNLD28-TUMOR_peak_52067	chr2	33880780	33880949	+	15.41165	NA	Intergenic	MER52-int|LTR|ERV1	-56502	NM_015475	25940	Hs.468140	NM_015475	HPRD:16808	FAM98A	-	family with sequence similarity 98, member A	protein-coding
19-PTNLD28-TUMOR_peak_39283	chr16	87622489	87622652	+	15.41165	NA	Intergenic	Intergenic	-12871	NR_073379	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_91680	chr7	25133939	25134075	+	15.41165	NA	Intergenic	Intergenic	30973	NM_018947	54205	Hs.437060	NM_018947		CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
19-PTNLD28-TUMOR_peak_95125	chr7	128177555	128177772	+	15.41165	NA	Intergenic	Intergenic	60880	NM_018396	55798	Hs.433213	NM_018396	HPRD:09705	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
19-PTNLD28-TUMOR_peak_51652	chr2	26367829	26368105	+	15.41165	NA	Intergenic	Intergenic	-27993	NM_001168241	150946	Hs.187912	NM_001168241	ENSG00000157833	GAREML	FAM59B	GRB2 associated, regulator of MAPK1-like	protein-coding
19-PTNLD28-TUMOR_peak_71367	chr3	141517388	141517615	+	15.41165	NA	intron (NM_139209, intron 2 of 3)	intron (NM_139209, intron 2 of 3)	20458	NM_139209	131890	Hs.680654	NM_139209		GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_15051	chr10	98135143	98135463	+	15.41165	NA	intron (NM_012465, intron 18 of 20)	intron (NM_012465, intron 18 of 20)	-16181	NM_033207	93377	Hs.12449	NM_033207	HPRD:15521	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
19-PTNLD28-TUMOR_peak_63307	chr21	35855839	35856100	+	15.41165	NA	intron (NM_001270402, intron 1 of 2)	MER89|LTR|ERV1	-23733	NM_001270405	3753	Hs.121495	NM_000219	HPRD:01442	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel, Isk-related family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_93011	chr7	67935871	67936130	+	15.41165	NA	Intergenic	Intergenic	450760	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_106621	chr9	136930982	136931126	+	15.41146	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	2087	NM_007371	8019	Hs.522472	NM_007371	HPRD:03327	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_24806	chr12	58230707	58231134	+	15.41146	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	9827	NM_005730	10106	Hs.524530	NM_005730	HPRD:12281	CTDSP2	OS4|PSR2|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_42199	chr17	48177884	48178044	+	15.40962	NA	intron (NM_001199898, intron 3 of 11)	intron (NM_001199898, intron 3 of 11)	4905	NM_001199899	5164	Hs.256667	NM_002611	HPRD:03955	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase, isozyme 2	protein-coding
19-PTNLD28-TUMOR_peak_87812	chr6	46703047	46703347	+	15.40705	NA	promoter-TSS (NM_005084)	promoter-TSS (NM_005084)	-46	NM_005084	7941	Hs.584823	NM_005084	HPRD:03407	PLA2G7	LDL-PLA2|LP-PLA2|PAFAD|PAFAH	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding
19-PTNLD28-TUMOR_peak_90360	chr6	160249087	160249549	+	15.40512	NA	Intergenic	MSTA|LTR|ERVL-MaLR	28037	NM_001271862	154197	Hs.349077	NM_173516	HPRD:17868	PNLDC1	-	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_40588	chr17	19803984	19804464	+	15.40512	NA	Intergenic	Intergenic	-32985	NM_001142610	9706	Hs.168762	NM_014683	HPRD:10556	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_40383	chr17	17470249	17470672	+	15.40512	NA	intron (NM_001267552, intron 2 of 7)	intron (NM_001267552, intron 2 of 7)	10319	NM_148173	10400	Hs.714193	NM_007169	HPRD:03862	PEMT	PEAMT|PEMPT|PEMT2|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_43074	chr17	65633109	65633260	+	15.40512	NA	intron (NM_181671, intron 6 of 9)	L2c|LINE|L2	-80877	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_6178	chr1	144146801	144146906	+	15.40512	NA	promoter-TSS (NM_001278267)	promoter-TSS (NM_001278267)	42	NM_001278267	100288142	Hs.445080	NM_001278267	ENSG00000203832	NBPF20	-	neuroblastoma breakpoint family, member 20	protein-coding
19-PTNLD28-TUMOR_peak_4382	chr1	76080488	76080710	+	15.40512	NA	Intergenic	CpG	-3800	NM_152697	204962	Hs.654821	NM_152697	HPRD:14580	SLC44A5	CTL5	solute carrier family 44, member 5	protein-coding
19-PTNLD28-TUMOR_peak_7667	chr1	161226046	161226227	+	15.40512	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-2381	NM_001102566	654790	Hs.433150	NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_22039	chr11	128323412	128323657	+	15.40512	NA	Intergenic	L2b|LINE|L2	68671	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_26679	chr12	120966692	120967075	+	15.40512	NA	promoter-TSS (NM_032314)	promoter-TSS (NM_032314)	81	NM_032314	84274	Hs.17250	NM_032314	HPRD:17560	COQ5	-	coenzyme Q5 homolog, methyltransferase (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_48931	chr19	39209868	39210201	+	15.40479	NA	intron (NM_004924, intron 11 of 20)	intron (NM_004924, intron 11 of 20)	25080	NM_144691	147968	Hs.731775	NM_144691	HPRD:07007	CAPN12	-	calpain 12	protein-coding
19-PTNLD28-TUMOR_peak_62263	chr20	55936721	55936850	+	15.40364	NA	intron (NM_001015885, intron 4 of 11)	intron (NM_001015885, intron 4 of 11)	-1907	NM_001190472	100462983	Hs.727477	NM_001190472	ENSG00000256222	MTRNR2L3	HN3	MT-RNR2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_43111	chr17	66229029	66229183	+	15.39804	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-15039	NM_001033570	51321	Hs.293560	NM_016627	HPRD:14237	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_28349	chr13	53775320	53775683	+	15.39804	NA	Intergenic	CpG	-49466	NR_125788	102723875	Hs.149083	NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
19-PTNLD28-TUMOR_peak_41573	chr17	40961413	40961582	+	15.39804	NA	TTS (NM_003766)	TTS (NM_003766)	10643	NM_173478	124817	Hs.12272	NM_173478		CNTD1	CNTD	cyclin N-terminal domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_60540	chr20	31659080	31659330	+	15.39804	NA	intron (NM_182658, intron 12 of 14)	intron (NM_182658, intron 12 of 14)	-10113	NM_182519	149954	Hs.38961	NM_182519	HPRD:16645	BPIFB4	C20orf186|LPLUNC4|RY2G5|dJ726C3.5	BPI fold containing family B, member 4	protein-coding
19-PTNLD28-TUMOR_peak_97945	chr8	28982991	28983488	+	15.39804	NA	intron (NM_015254, intron 26 of 39)	Plat_L3|LINE|CR1	137371	NM_015254	23303	Hs.444767	NM_015254	HPRD:09556	KIF13B	GAKIN	kinesin family member 13B	protein-coding
19-PTNLD28-TUMOR_peak_66392	chr3	8772430	8772715	+	15.39804	NA	Intergenic	Intergenic	-2914	NM_033337	859	Hs.98303	NM_001234	HPRD:03154	CAV3	LGMD1C|LQT9|VIP-21|VIP21	caveolin 3	protein-coding
19-PTNLD28-TUMOR_peak_28950	chr13	106631567	106631757	+	15.39804	NA	Intergenic	Intergenic	272483	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_26383	chr12	113059430	113059568	+	15.39804	NA	Intergenic	L1PA2|LINE|L1	-170050	NM_014954	22895	Hs.21239	NM_014954	HPRD:15273	RPH3A	-	rabphilin 3A	protein-coding
19-PTNLD28-TUMOR_peak_68393	chr3	53254034	53254169	+	15.39804	NA	Intergenic	Intergenic	36029	NM_001135055	7086	Hs.89643	NM_001064	HPRD:06001	TKT	HEL107|TK|TKT1	transketolase	protein-coding
19-PTNLD28-TUMOR_peak_89534	chr6	134427002	134427413	+	15.39804	NA	Intergenic	Intergenic	11611	NR_037938	387065	Hs.571061	NR_037938		HMGA1P7	HMGA1L7	high mobility group AT-hook 1 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_72366	chr3	172050427	172050559	+	15.39804	NA	intron (NM_001135095, intron 13 of 25)	intron (NM_001135095, intron 13 of 25)	115753	NM_198407	2693	Hs.130212	NM_004122	HPRD:03541	GHSR	-	growth hormone secretagogue receptor	protein-coding
19-PTNLD28-TUMOR_peak_8418	chr1	177647703	177647971	+	15.39804	NA	Intergenic	Intergenic	-21822	NR_110722	101928778	Hs.573792	NR_110722	ENSG00000236720	LOC101928778	-	uncharacterized LOC101928778	ncRNA
19-PTNLD28-TUMOR_peak_103061	chr9	38424370	38424526	+	15.39804	NA	promoter-TSS (NM_001007563)	promoter-TSS (NM_001007563)	-4	NM_001007563	347252	Hs.349705	NM_001007563		IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_13156	chr10	42971015	42971713	+	15.39804	NA	intron (NR_026827, intron 1 of 4)	CpG	425	NR_026827	84856	Hs.55977	NM_032770	HPRD:17516	LINC00839	-	long intergenic non-protein coding RNA 839	ncRNA
19-PTNLD28-TUMOR_peak_89805	chr6	144586658	144586790	+	15.39299	NA	Intergenic	Intergenic	-26149	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_72845	chr3	185081210	185081551	+	15.39299	NA	intron (NM_004721, intron 1 of 13)	intron (NM_004721, intron 1 of 13)	544	NM_004721	9175	Hs.591306	NM_004721	HPRD:05372	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_101103	chr8	134121864	134122160	+	15.39299	NA	intron (NM_003235, intron 43 of 47)	intron (NM_003235, intron 43 of 47)	-6702	NM_001282964	6503	Hs.75367	NM_006748	HPRD:03060	SLA	SLA1|SLAP	Src-like-adaptor	protein-coding
19-PTNLD28-TUMOR_peak_7367	chr1	156767200	156767343	+	15.39299	NA	intron (NM_005973, intron 6 of 6)	intron (NM_005973, intron 6 of 6)	-18271	NM_001007792	4914	Hs.406293	NM_002529	HPRD:01869	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic tyrosine kinase, receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_85378	chr6	11784711	11784853	+	15.39299	NA	Intergenic	L1MA8|LINE|L1	-5502	NM_032744	84830	Hs.126409	NM_032744	HPRD:12836	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
19-PTNLD28-TUMOR_peak_63653	chr21	42688534	42688963	+	15.39299	NA	promoter-TSS (NM_058186)	promoter-TSS (NM_058186)	87	NM_206964	54097	Hs.473877	NM_058186		FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER	family with sequence similarity 3, member B	protein-coding
19-PTNLD28-TUMOR_peak_64211	chr22	17679668	17679837	+	15.39299	NA	intron (NM_001282227, intron 4 of 9)	intron (NM_001282227, intron 4 of 9)	921	NM_177405	51816	Hs.170310	NM_017424	HPRD:10462	CECR1	ADA2|ADGF|IDGFL|PAN|SNEDS	cat eye syndrome chromosome region, candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_82753	chr5	141081739	141081967	+	15.39299	NA	Intergenic	Intergenic	-20053	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_51186	chr2	12309220	12309531	+	15.39299	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	162133	NR_110196	100506457	Hs.197824	NR_110196	ENSG00000224184	LOC100506457	-	uncharacterized LOC100506457	ncRNA
19-PTNLD28-TUMOR_peak_55323	chr2	120889999	120890124	+	15.39299	NA	intron (NM_020909, intron 18 of 24)	intron (NM_020909, intron 18 of 24)	90923	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
19-PTNLD28-TUMOR_peak_3074	chr1	44569076	44569400	+	15.39299	NA	Intergenic	CpG	-15284	NM_173484	128209	Hs.567674	NM_173484	HPRD:08272	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
19-PTNLD28-TUMOR_peak_84268	chr5	176328840	176329055	+	15.39292	NA	Intergenic	Intergenic	-2614	NM_002115	3101	Hs.411695	NM_002115	HPRD:00806	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
19-PTNLD28-TUMOR_peak_104330	chr9	89691790	89692086	+	15.39292	NA	Intergenic	Intergenic	8202	NR_036691	494127	Hs.626316	NR_036691		LOC494127	-	NFYC pseudogene	pseudo
19-PTNLD28-TUMOR_peak_97137	chr8	10785995	10786225	+	15.39292	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	88574	NR_125432	101929229	Hs.129800	NR_125432		LOC101929229	-	uncharacterized LOC101929229	ncRNA
19-PTNLD28-TUMOR_peak_30775	chr14	65103514	65103672	+	15.39292	NA	Intergenic	Intergenic	-67600	NM_015549	26030	Hs.509637	NM_015549	HPRD:17861	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
19-PTNLD28-TUMOR_peak_63782	chr21	44050852	44051069	+	15.39292	NA	Intergenic	ERVL-E-int|LTR|ERVL	-22902	NM_001001571	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_98375	chr8	40958614	40958839	+	15.39292	NA	Intergenic	Intergenic	-203383	NM_001135731	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_75297	chr4	53525378	53525747	+	15.39292	NA	promoter-TSS (NM_022832)	promoter-TSS (NM_022832)	-11	NR_125363	643783	Hs.631514	NR_125363	ENSG00000248866	USP46-AS1	-	USP46 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88093	chr6	55733660	55734016	+	15.39292	NA	intron (NM_021073, intron 1 of 6)	intron (NM_021073, intron 1 of 6)	6537	NM_021073	653	Hs.296648	NM_021073	HPRD:00210	BMP5	-	bone morphogenetic protein 5	protein-coding
19-PTNLD28-TUMOR_peak_44721	chr18	13654051	13654381	+	15.39292	NA	Intergenic	Intergenic	12459	NM_001276251	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_50915	chr2	8470256	8470606	+	15.39292	NA	Intergenic	Intergenic	-1882	NR_034135	339789	Hs.565619	NM_207358	HPRD:14171	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
19-PTNLD28-TUMOR_peak_82523	chr5	138781281	138781549	+	15.39292	NA	Intergenic	Intergenic	-6201	NM_152686	202052	Hs.483537	NM_152686	HPRD:07130	DNAJC18	-	DnaJ (Hsp40) homolog, subfamily C, member 18	protein-coding
19-PTNLD28-TUMOR_peak_83143	chr5	149213945	149214067	+	15.39292	NA	intron (NM_133263, intron 5 of 11)	intron (NM_133263, intron 5 of 11)	62503	NM_001172699	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_103416	chr9	66110000	66110214	+	15.39292	NA	Intergenic	CpG	-347182	NR_121647	103352539	Hs.351215	NR_121647		LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
19-PTNLD28-TUMOR_peak_23852	chr12	43138593	43138969	+	15.39292	NA	Intergenic	Intergenic	-98481	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_75615	chr4	71767818	71768198	+	15.39292	NA	promoter-TSS (NM_001244767)	promoter-TSS (NM_001244767)	-49	NM_001244767	92597	Hs.691454	NM_173468	HPRD:17582	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
19-PTNLD28-TUMOR_peak_23848	chr12	43091953	43092376	+	15.39292	NA	Intergenic	Intergenic	-51864	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_21103	chr11	111169709	111170104	+	15.38385	NA	promoter-TSS (NM_001136105)	promoter-TSS (NM_001136105)	-70	NM_001136105	120376	Hs.31409	NM_001136105	ENSG00000214290	COLCA2	C11orf93|CASC13	colorectal cancer associated 2	protein-coding
19-PTNLD28-TUMOR_peak_106194	chr9	130504782	130505324	+	15.38385	NA	intron (NM_001252334, intron 8 of 11)	intron (NM_001252334, intron 8 of 11)	-7425	NM_001252018	27433	Hs.444106	NM_130459	HPRD:16271	TOR2A	TORP1	torsin family 2, member A	protein-coding
19-PTNLD28-TUMOR_peak_48020	chr19	18272127	18272525	+	15.37693	NA	intron (NR_073517, intron 6 of 15)	(CGGGG)n|Simple_repeat|Simple_repeat	8338	NM_005027	5296	Hs.371344	NM_005027	HPRD:04404	PIK3R2	MPPH|P85B|p85|p85-BETA	phosphoinositide-3-kinase, regulatory subunit 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_55975	chr2	137522042	137522305	+	15.37270	NA	Intergenic	Intergenic	-226289	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_5283	chr1	108075058	108075216	+	15.36951	NA	Intergenic	Intergenic	155989	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_58882	chr2	233453669	233453880	+	15.36894	NA	Intergenic	L2b|LINE|L2	-16993	NM_001243252	80303	Hs.516769	NM_025202	HPRD:13265	EFHD1	MST133|MSTP133|SWS2	EF-hand domain family, member D1	protein-coding
19-PTNLD28-TUMOR_peak_3177	chr1	46153757	46154135	+	15.36055	NA	promoter-TSS (NM_016486)	promoter-TSS (NM_016486)	99	NM_016486	51249	Hs.699548	NM_016486		TMEM69	C1orf154	transmembrane protein 69	protein-coding
19-PTNLD28-TUMOR_peak_2055	chr1	32059711	32059831	+	15.35991	NA	Intergenic	Intergenic	16025	NM_001204415	64129	Hs.199368	NM_022164	HPRD:07122	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4616	chr1	85796128	85796275	+	15.35991	NA	intron (NM_012137, intron 4 of 5)	intron (NM_012137, intron 4 of 5)	-53614	NM_003921	8915	Hs.193516	NM_003921	HPRD:04625	BCL10	CARMEN|CIPER|CLAP|c-E10|mE10	B-cell CLL/lymphoma 10	protein-coding
19-PTNLD28-TUMOR_peak_27615	chr13	29325329	29325450	+	15.35991	NA	Intergenic	AluJb|SINE|Alu	-32239	NM_181785	283537	Hs.117167	NM_181785	HPRD:14146	SLC46A3	FKSG16	solute carrier family 46, member 3	protein-coding
19-PTNLD28-TUMOR_peak_43621	chr17	75085316	75085465	+	15.35991	NA	promoter-TSS (NR_003013)	promoter-TSS (NR_003013)	1	NR_003013	677781	Hs.720923	NR_003013	ENSG00000234912	SCARNA16	ACA47	small Cajal body-specific RNA 16	ncRNA
19-PTNLD28-TUMOR_peak_47863	chr19	17133100	17133353	+	15.35991	NA	intron (NM_015692, intron 1 of 41)	L2c|LINE|L2	4399	NM_015692	27151	Hs.631644	NM_015692	HPRD:09892	CPAMD8	K-CAP|VIP	C3 and PZP-like, alpha-2-macroglobulin domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_46348	chr18	74844655	74844856	+	15.35678	NA	promoter-TSS (NM_001025100)	promoter-TSS (NM_001025100)	19	NM_001025100	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_109056	chrX	104166323	104166589	+	15.35246	NA	intron (NM_017416, intron 2 of 10)	L1PA15-16|LINE|L1	298921	NM_031274	56157	Hs.567543	NM_031274	HPRD:02257	TEX13A	-	testis expressed 13A	protein-coding
19-PTNLD28-TUMOR_peak_90047	chr6	151482034	151482425	+	15.35246	NA	Intergenic	Intergenic	-78905	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_69818	chr3	112415175	112415389	+	15.35246	NA	Intergenic	Intergenic	52884	NR_110017	101929694	Hs.385630	NR_110017	ENSG00000240893	LOC101929694	-	uncharacterized LOC101929694	ncRNA
19-PTNLD28-TUMOR_peak_22040	chr11	128333482	128333651	+	15.35246	NA	intron (NM_001143820, intron 8 of 9)	intron (NM_001143820, intron 8 of 9)	58639	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_27333	chr13	20175954	20176357	+	15.35246	NA	Intergenic	CpG	-31633	NM_017520	54737	Hs.269654	NM_017520	HPRD:13682	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
19-PTNLD28-TUMOR_peak_88847	chr6	97386867	97387402	+	15.35246	NA	intron (NR_104421, intron 1 of 8)	Charlie26a|DNA|hAT-Charlie	14638	NR_104421	114792	Hs.45056	NM_052904	HPRD:13898	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch-like family member 32	protein-coding
19-PTNLD28-TUMOR_peak_9389	chr1	203087073	203087199	+	15.35246	NA	Intergenic	Intergenic	-9700	NM_000674	134	Hs.77867	NM_000674	HPRD:00042	ADORA1	RDC7	adenosine A1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_103492	chr9	67593123	67593362	+	15.35246	NA	Intergenic	Intergenic	-185881	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_3971	chr1	62353708	62353864	+	15.35228	NA	intron (NM_176877, intron 22 of 42)	intron (NM_176877, intron 22 of 42)	145637	NM_176877	10207	Hs.478125	NM_005799	HPRD:04434	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_55738	chr2	131862498	131862641	+	15.35228	NA	non-coding (NR_049790, exon 1 of 6)	non-coding (NR_049790, exon 1 of 6)	149	NM_017958	55041	Hs.469944	NM_017958	HPRD:15144	PLEKHB2	EVT2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
19-PTNLD28-TUMOR_peak_104840	chr9	99822064	99822235	+	15.34356	NA	Intergenic	Intergenic	-20224	NM_001201575	1515	Hs.610096	NM_001333		CTSV	CATL2|CTSL2|CTSU	cathepsin V	protein-coding
19-PTNLD28-TUMOR_peak_7954	chr1	166921695	166921907	+	15.34356	NA	intron (NM_199351, intron 3 of 9)	intron (NM_199351, intron 3 of 9)	22760	NM_199351	387597	Hs.444835	NM_199351	HPRD:12724	ILDR2	C1orf32|dJ782G3.1	immunoglobulin-like domain containing receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_26225	chr12	110213167	110213311	+	15.34356	NA	Intergenic	Intergenic	-1947	NR_026662	84983	Hs.675961	NM_032897	ENSG00000255650	FAM222A-AS1	-	FAM222A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_94276	chr7	99766167	99766366	+	15.34356	NA	TTS (NM_152742)	TTS (NM_152742)	107	NM_024637	79690	Hs.44856	NM_024637	HPRD:12195	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_43812	chr17	77083785	77083985	+	15.34356	NA	3' UTR (NM_001042573, exon 14 of 14)	3' UTR (NM_001042573, exon 14 of 14)	12866	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
19-PTNLD28-TUMOR_peak_86555	chr6	30978539	30978684	+	15.34177	NA	intron (NM_001198815, intron 2 of 4).6	intron (NM_001198815, intron 2 of 4).6	4882	NM_001198815	100507679	Hs.582967	NM_001198815	ENSG00000261272	MUC22	PBMUCL1	mucin 22	protein-coding
19-PTNLD28-TUMOR_peak_55334	chr2	121070479	121071195	+	15.34177	NA	Intergenic	Intergenic	-32882	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_67126	chr3	23115307	23115450	+	15.33920	NA	Intergenic	Intergenic	-129406	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_42863	chr17	62083254	62083488	+	15.33920	NA	intron (NM_001099787, intron 2 of 4)	L2a|LINE|L2	912	NM_000873	3384	Hs.431460	NM_000873	HPRD:00888	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_29850	chr14	34697329	34697446	+	15.33920	NA	Intergenic	Intergenic	234081	NM_138288	171546	Hs.740577	NM_138288	HPRD:16610	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase, small subunit A	protein-coding
19-PTNLD28-TUMOR_peak_65044	chr22	30423196	30423487	+	15.33920	NA	3' UTR (NM_153050, exon 20 of 20)	3' UTR (NM_153050, exon 20 of 20)	20303	NR_106876	102466742		NR_106876		MIR6818	hsa-mir-6818	microRNA 6818	ncRNA
19-PTNLD28-TUMOR_peak_12084	chr10	13141473	13142000	+	15.33544	NA	promoter-TSS (NM_021980)	promoter-TSS (NM_021980)	37	NM_001282658	83643	Hs.498720	NM_031455	HPRD:13008	CCDC3	-	coiled-coil domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_185	chr1	1837792	1837923	+	15.33544	NA	Intergenic	Intergenic	-8409	NM_138705	163688	Hs.85902	NM_138705	HPRD:12997	CALML6	CAGLP	calmodulin-like 6	protein-coding
19-PTNLD28-TUMOR_peak_90947	chr7	2727708	2727868	+	15.33544	NA	promoter-TSS (NM_001284355)	promoter-TSS (NM_001284355)	-48	NM_001284355	155185	Hs.42221	NM_133463	HPRD:17232	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_64595	chr22	22291403	22291577	+	15.33543	NA	intron (NM_014634, intron 3 of 7)	intron (NM_014634, intron 3 of 7)	15760	NM_014634	9647	Hs.112728	NM_014634	HPRD:10163	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent, 1F	protein-coding
19-PTNLD28-TUMOR_peak_51745	chr2	27594226	27594405	+	15.33434	NA	promoter-TSS (NM_015636)	promoter-TSS (NM_015636)	952	NR_049784	9784	Hs.278569	NM_014748	HPRD:05812	SNX17	-	sorting nexin 17	protein-coding
19-PTNLD28-TUMOR_peak_95991	chr7	142564183	142564321	+	15.33383	NA	exon (NM_001280794, exon 9 of 19)	exon (NM_001280794, exon 9 of 19)	3738	NM_001280795	2051	Hs.380089	NM_004445	HPRD:04133	EPHB6	HEP	EPH receptor B6	protein-coding
19-PTNLD28-TUMOR_peak_1706	chr1	27024678	27024878	+	15.33271	NA	intron (NM_006015, intron 1 of 19)	intron (NM_006015, intron 1 of 19)	2256	NM_139135	8289	Hs.468972	NM_006015	HPRD:04319	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT rich interactive domain 1A (SWI-like)	protein-coding
19-PTNLD28-TUMOR_peak_15128	chr10	99474362	99474754	+	15.32972	NA	3' UTR (NM_031484, exon 1 of 2)	3' UTR (NM_031484, exon 1 of 2)	1093	NM_031484	83742	Hs.744073	NM_031484	HPRD:14364	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_82377	chr5	136147353	136147508	+	15.32680	NA	Intergenic	Intergenic	-446266	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_96358	chr7	150909851	150910010	+	15.32680	NA	3' UTR (NM_007189, exon 15 of 15)	3' UTR (NM_007189, exon 15 of 15)	14530	NM_005692	10061	Hs.654958	NM_005692	HPRD:12403	ABCF2	ABC28|EST133090|HUSSY18	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding
19-PTNLD28-TUMOR_peak_59054	chr2	237735476	237735684	+	15.32680	NA	Intergenic	MER21C|LTR|ERVL	257200	NM_020311	57007	Hs.471751	NM_020311	HPRD:09882	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_86052	chr6	25652358	25652731	+	15.32680	NA	5' UTR (NM_006998, exon 1 of 11)	5' UTR (NM_006998, exon 1 of 11)	115	NM_006998	10590	Hs.116428	NM_006998	HPRD:10211	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
19-PTNLD28-TUMOR_peak_50580	chr19	58971571	58971707	+	15.32680	NA	Intergenic	LTR49-int|LTR|ERV1	-6773	NM_014347	25799	Hs.515660	NM_014347	HPRD:11708	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
19-PTNLD28-TUMOR_peak_70305	chr3	124233685	124233852	+	15.32680	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-69738	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_105157	chr9	109460323	109460779	+	15.32680	NA	Intergenic	Intergenic	82212	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234229	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
19-PTNLD28-TUMOR_peak_67379	chr3	31292018	31292185	+	15.32680	NA	Intergenic	LTR78|LTR|ERV1	-281892	NM_178862	201595	Hs.475812	NM_178862		STT3B	CDG1X|SIMP|STT3-B	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_39075	chr16	84300115	84300232	+	15.32680	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-26817	NM_172347	93107	Hs.335877	NM_133490		KCNG4	KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding
19-PTNLD28-TUMOR_peak_61443	chr20	45173786	45173989	+	15.32680	NA	intron (NM_080721, intron 2 of 2)	intron (NM_080721, intron 2 of 2)	5326	NM_080721	128506	Hs.526636	NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_88760	chr6	90914011	90914404	+	15.32415	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	92420	NM_021813	60468	Hs.269764	NM_021813	HPRD:12012	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_9387	chr1	203060090	203060300	+	15.32415	NA	Intergenic	Intergenic	-5029	NM_002479	4656	Hs.2830	NM_002479	HPRD:01167	MYOG	MYF4|bHLHc3|myf-4	myogenin (myogenic factor 4)	protein-coding
19-PTNLD28-TUMOR_peak_67653	chr3	40518458	40518878	+	15.32415	NA	promoter-TSS (NM_001145083)	promoter-TSS (NM_001145083)	35	NM_001145083	285267	Hs.407159	NM_173656	HPRD:15877	ZNF619	-	zinc finger protein 619	protein-coding
19-PTNLD28-TUMOR_peak_86447	chr6	30137913	30138030	+	15.32415	NA	intron (NM_033229, intron 4 of 6).3	intron (NM_033229, intron 4 of 6).3	6988	NM_033229	89870	Hs.591789	NM_033229	HPRD:15551	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
19-PTNLD28-TUMOR_peak_101988	chr9	2984537	2984792	+	15.32415	NA	Intergenic	Intergenic	-140534	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_37087	chr16	29032071	29032312	+	15.32415	NA	Intergenic	L1ME3C|LINE|L1	35804	NM_014387	27040	Hs.632179	NM_014387	HPRD:03832	LAT	LAT1|pp36	linker for activation of T cells	protein-coding
19-PTNLD28-TUMOR_peak_80297	chr5	65465468	65465613	+	15.32415	NA	intron (NM_001077199, intron 7 of 11)	intron (NM_001077199, intron 7 of 11)	24877	NM_139168	140890	Hs.49367	NM_139168	HPRD:18043	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamine/lysine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_73192	chr3	190142318	190142705	+	15.32415	NA	Intergenic	AluSx1|SINE|Alu	25154	NM_207316	131920	Hs.335321	NM_207316	HPRD:15621	TMEM207	UNQ846	transmembrane protein 207	protein-coding
19-PTNLD28-TUMOR_peak_42991	chr17	63851477	63851646	+	15.32415	NA	intron (NM_145036, intron 20 of 26)	intron (NM_145036, intron 20 of 26)	-28900	NM_001037325	201134	Hs.408676	NM_145036	HPRD:11336	CEP112	CCDC46|MACOCO	centrosomal protein 112kDa	protein-coding
19-PTNLD28-TUMOR_peak_97340	chr8	17591843	17592140	+	15.32415	NA	intron (NM_001001924, intron 3 of 14)	intron (NM_001001924, intron 3 of 14)	-11907	NM_001166393	57509	Hs.7946	NM_020749	HPRD:11376	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_31474	chr14	78447156	78447764	+	15.32415	NA	Intergenic	CpG	181034	NM_020421	57143	Hs.413208	NM_020421	HPRD:10630	ADCK1	-	aarF domain containing kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_107825	chrX	24099782	24100145	+	15.32415	NA	Intergenic	AluJr|SINE|Alu	26898	NM_001415	1968	Hs.539684	NM_001415		EIF2S3	EIF2|EIF2G|EIF2gamma|eIF-2gA	eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	protein-coding
19-PTNLD28-TUMOR_peak_55589	chr2	128827343	128827588	+	15.32415	NA	Intergenic	Intergenic	-21289	NM_020120	56886	Hs.743306	NM_020120	HPRD:12064	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_94114	chr7	97602636	97602800	+	15.32392	NA	Intergenic	MER51E|LTR|ERV1	-1080	NR_002822	389538	Hs.655977	NR_002822		MGC72080	-	MGC72080 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_70441	chr3	125640714	125640891	+	15.31646	NA	intron (NR_024251, intron 3 of 4)	intron (NR_024251, intron 3 of 4)	5358	NR_024251	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_14321	chr10	75349428	75349565	+	15.31500	NA	Intergenic	Intergenic	-14063	NM_152586	159195	Hs.657355	NM_152586	HPRD:15641	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
19-PTNLD28-TUMOR_peak_59571	chr20	3762041	3762212	+	15.31500	NA	promoter-TSS (NM_015417)	promoter-TSS (NM_015417)	-24	NM_015417	25876	Hs.72620	NM_015417	HPRD:09839	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
19-PTNLD28-TUMOR_peak_43027	chr17	64941792	64941921	+	15.31500	NA	Intergenic	Intergenic	-19124	NM_014405	27092	Hs.514423	NM_014405	HPRD:05911	CACNG4	-	calcium channel, voltage-dependent, gamma subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_105609	chr9	117373908	117374274	+	15.31500	NA	intron (NM_153045, intron 1 of 8)	intron (NM_153045, intron 1 of 8)	385	NM_153045	203197	Hs.522357	NM_153045	HPRD:12988	C9orf91	-	chromosome 9 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_91869	chr7	30945685	30945917	+	15.31500	NA	Intergenic	Intergenic	-5614	NM_198098	358	Hs.76152	NM_000385	HPRD:00140	AQP1	AQP-CHIP|CHIP28|CO	aquaporin 1 (Colton blood group)	protein-coding
19-PTNLD28-TUMOR_peak_82064	chr5	131348370	131348519	+	15.31500	NA	promoter-TSS (NM_001205248)	promoter-TSS (NM_001205248)	-683	NM_001205250	23305	Hs.14945	NM_015256	HPRD:09190	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long-chain family member 6	protein-coding
19-PTNLD28-TUMOR_peak_75883	chr4	79550072	79550397	+	15.30870	NA	Intergenic	MER77B|LTR|ERVL	-16914	NR_038308	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_57869	chr2	203104179	203104362	+	15.30870	NA	promoter-TSS (NM_003352)	promoter-TSS (NM_003352)	-948	NM_003352	7341	Hs.81424	NM_003352	HPRD:03554	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin-like modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_6040	chr1	120855819	120856010	+	15.30241	NA	TTS (NM_001100910)	TTS (NM_001100910)	16909	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_84493	chr5	179233792	179233992	+	15.30110	NA	promoter-TSS (NM_014275)	promoter-TSS (NM_014275)	60	NM_014275	11282	Hs.567419	NM_014275	HPRD:05190	MGAT4B	GNT-IV|GNT-IVB	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_53674	chr2	80332260	80332413	+	15.30021	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	199151	NM_178839	347730	Hs.591580	NM_178839	HPRD:14323	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_47212	chr19	10499618	10499915	+	15.30021	NA	Intergenic	Intergenic	-8518	NM_003331	7297	Hs.75516	NM_003331	HPRD:01490	TYK2	JTK1	tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_61999	chr20	51590217	51590350	+	15.30021	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	1337	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_90810	chr7	1163414	1163760	+	15.29638	NA	intron (NM_001134395, intron 2 of 4)	intron (NM_001134395, intron 2 of 4)	14306	NM_001134396	84310	Hs.653258	NM_032350	HPRD:14413	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
19-PTNLD28-TUMOR_peak_5414	chr1	110318173	110318325	+	15.29638	NA	Intergenic	Intergenic	-11605	NM_024526	79574	Hs.485352	NM_024526	HPRD:13277	EPS8L3	EPS8R3	EPS8-like 3	protein-coding
19-PTNLD28-TUMOR_peak_109930	chrX	153254091	153254308	+	15.29517	NA	Intergenic	Intergenic	-7572	NR_036175	100422877		NR_036175		MIR3202-2	-	microRNA 3202-2	ncRNA
19-PTNLD28-TUMOR_peak_20127	chr11	75918645	75918905	+	15.29515	NA	Intergenic	CpG	-1201	NM_004626	7481	Hs.108219	NM_004626	HPRD:04741	WNT11	HWNT11	wingless-type MMTV integration site family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_89561	chr6	135232765	135232963	+	15.29515	NA	Intergenic	Intergenic	38396	NM_170771	64577	Hs.486520	NM_022568	HPRD:06974	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_108166	chrX	47142376	47142719	+	15.29494	NA	Intergenic	Intergenic	50233	NM_004651	8237	Hs.171501	NM_004651	HPRD:02081	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_35561	chr15	102307291	102307499	+	15.29376	NA	Intergenic	Intergenic	-38528	NM_001005326	390648	Hs.553399	NM_001005326	HPRD:11415	OR4F6	OR15-15|OR4F12	olfactory receptor, family 4, subfamily F, member 6	protein-coding
19-PTNLD28-TUMOR_peak_15939	chr10	121138125	121138546	+	15.29376	NA	TTS (NR_039829)	TTS (NR_039829)	851	NR_039829	100616398		NR_039829		MIR4681	-	microRNA 4681	ncRNA
19-PTNLD28-TUMOR_peak_99382	chr8	86089895	86090255	+	15.29376	NA	intron (NM_001083588, intron 1 of 7)	CpG	456	NM_001951	1875	Hs.445758	NM_001951	HPRD:02983	E2F5	E2F-5	E2F transcription factor 5, p130-binding	protein-coding
19-PTNLD28-TUMOR_peak_59728	chr20	8737853	8738183	+	15.29376	NA	intron (NM_015192, intron 24 of 31)	intron (NM_015192, intron 24 of 31)	-311683	NM_001172646	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_5854	chr1	117515353	117515702	+	15.29376	NA	intron (NM_020440, intron 6 of 8)	intron (NM_020440, intron 6 of 8)	-28845	NM_004258	9398	Hs.654598	NM_004258	HPRD:05154	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
19-PTNLD28-TUMOR_peak_101658	chr8	144815509	144816029	+	15.28724	NA	promoter-TSS (NR_039810)	promoter-TSS (NR_039810)	145	NM_198488	286077	Hs.67776	NM_198488	HPRD:13521	FAM83H	AI3	family with sequence similarity 83, member H	protein-coding
19-PTNLD28-TUMOR_peak_2812	chr1	41703903	41704394	+	15.28640	NA	intron (NM_001172218, intron 1 of 15)	L2c|LINE|L2	3667	NM_001172218	22955	Hs.571874	NM_012236	HPRD:11540	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_64033	chr21	46668983	46669140	+	15.28594	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	38750	NM_133635	23275	Hs.592164	NM_015227	HPRD:09846	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_78195	chr4	183739664	183739848	+	15.28594	NA	Intergenic	LTR7Y|LTR|ERV1	98874	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_78499	chr4	190223916	190224128	+	15.28594	NA	Intergenic	Intergenic	-356738	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_93425	chr7	75391881	75392080	+	15.28594	NA	Intergenic	Intergenic	-23690	NM_001243198	3092	Hs.329266	NM_005338	HPRD:03461	HIP1	HIP-I|ILWEQ	huntingtin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_95426	chr7	132078552	132078870	+	15.27688	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	182612	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_32785	chr15	30212868	30213030	+	15.27547	NA	intron (NM_001301025, intron 2 of 28)	intron (NM_001301025, intron 2 of 28)	48053	NM_001301025	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_1480	chr1	24069476	24070037	+	15.27000	NA	promoter-TSS (NM_003198)	promoter-TSS (NM_003198)	-100	NM_003198	6924	Hs.15535	NM_003198	HPRD:02873	TCEB3	EloA|SIII|SIII p110|TCEB3A	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	protein-coding
19-PTNLD28-TUMOR_peak_25322	chr12	72665722	72666155	+	15.27000	NA	promoter-TSS (NM_013381)	promoter-TSS (NM_013381)	-591	NM_013381	29953	Hs.199814	NM_013381	HPRD:09506	TRHDE	PAP-II|PGPEP2|TRH-DE	thyrotropin-releasing hormone degrading enzyme	protein-coding
19-PTNLD28-TUMOR_peak_97500	chr8	21298275	21298429	+	15.27000	NA	Intergenic	MER82|DNA|TcMar-Tigger	142602	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_24818	chr12	58287629	58287877	+	15.26773	NA	Intergenic	Intergenic	42194	NR_038269	100506844	Hs.90286	NR_038269		LOC100506844	-	uncharacterized LOC100506844	ncRNA
19-PTNLD28-TUMOR_peak_48025	chr19	18285135	18285351	+	15.26773	NA	intron (NM_006332, intron 1 of 6)	intron (NM_006332, intron 1 of 6)	653	NM_006332	10437	Hs.14623	NM_006332	HPRD:05234	IFI30	GILT|IFI-30|IP30	interferon, gamma-inducible protein 30	protein-coding
19-PTNLD28-TUMOR_peak_80599	chr5	72248028	72248182	+	15.26348	NA	Intergenic	Intergenic	-3703	NM_138782	115548	Hs.165762	NM_138782	HPRD:13319	FCHO2	-	FCH domain only 2	protein-coding
19-PTNLD28-TUMOR_peak_39797	chr17	4379843	4380050	+	15.26128	NA	intron (NM_182538, intron 8 of 11)	intron (NM_182538, intron 8 of 11)	-22183	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_85866	chr6	21228751	21228918	+	15.26128	NA	intron (NM_017774, intron 15 of 15)	intron (NM_017774, intron 15 of 15)	283289	NR_103790	100874531	Hs.112750	NR_103790		LINC00581	-	long intergenic non-protein coding RNA 581	ncRNA
19-PTNLD28-TUMOR_peak_76921	chr4	124177254	124177468	+	15.26128	NA	intron (NM_145207, intron 15 of 15)	intron (NM_145207, intron 15 of 15)	-140589	NM_199327	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_10513	chr1	226796554	226796672	+	15.26128	NA	3' UTR (NM_001003665, exon 4 of 4)	3' UTR (NM_001003665, exon 4 of 4)	60112	NM_001003665	375057	Hs.116827	NM_001003665	HPRD:16821	C1orf95	-	chromosome 1 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_19984	chr11	73737963	73738140	+	15.26128	NA	intron (NM_001286577, intron 32 of 32)	MIRb|SINE|MIR	-17769	NM_022803	7352	Hs.101337	NM_003356	HPRD:03623	UCP3	SLC25A9	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding
19-PTNLD28-TUMOR_peak_37499	chr16	33647102	33647217	+	15.26128	NA	Intergenic	Intergenic	-83916	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76P	RNU6-76	RNA, U6 small nuclear 76, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_53013	chr2	62798316	62798532	+	15.26128	NA	Intergenic	Intergenic	-64820	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_43012	chr17	64551823	64552147	+	15.26128	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-139013	NR_110822	101928001	Hs.650730	NR_110822	ENSG00000264630	LOC101928001	-	uncharacterized LOC101928001	ncRNA
19-PTNLD28-TUMOR_peak_16179	chr10	127475502	127475670	+	15.26128	NA	Intergenic	Intergenic	-11196	NM_147191	118856	Hs.314141	NM_147191	HPRD:07003	MMP21	MMP-21	matrix metallopeptidase 21	protein-coding
19-PTNLD28-TUMOR_peak_97115	chr8	10447777	10447948	+	15.26128	NA	Intergenic	Intergenic	64755	NM_178857	94137	Hs.33538	NM_178857	HPRD:10546	RP1L1	DCDC4B	retinitis pigmentosa 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_28159	chr13	47177390	47177700	+	15.26128	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	50249	NM_015116	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49085	chr19	41018667	41018932	+	15.26128	NA	exon (NM_020971, exon 14 of 36)	exon (NM_020971, exon 14 of 36)	-17596	NM_025213	57731	Hs.32706	NM_020971	HPRD:09372	SPTBN4	QV|SPNB4|SPTBN3	spectrin, beta, non-erythrocytic 4	protein-coding
19-PTNLD28-TUMOR_peak_30385	chr14	54753928	54754505	+	15.26128	NA	Intergenic	Intergenic	-109457	NM_001130851	1033	Hs.84113	NM_005192	HPRD:00450	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin-dependent kinase inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_30471	chr14	56328767	56328893	+	15.26128	NA	Intergenic	L1P1|LINE|L1	-65438	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
19-PTNLD28-TUMOR_peak_24359	chr12	52789696	52789877	+	15.26128	NA	intron (NM_033033, intron 7 of 8)	intron (NM_033033, intron 7 of 8)	-10369	NM_033045	3890	Hs.272336	NM_033045	HPRD:09098	KRT84	HB4|KRTHB4	keratin 84	protein-coding
19-PTNLD28-TUMOR_peak_58112	chr2	209119128	209119495	+	15.26048	NA	promoter-TSS (NR_046452)	promoter-TSS (NR_046452)	-129	NM_001282386	3417	Hs.593422	NM_005896	HPRD:00984	IDH1	HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding
19-PTNLD28-TUMOR_peak_90895	chr7	2292753	2292917	+	15.25886	NA	3' UTR (NM_013321, exon 11 of 11)	3' UTR (NM_013321, exon 11 of 11)	4377	NR_106895	102465503		NR_106895		MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
19-PTNLD28-TUMOR_peak_84936	chr6	3839549	3839751	+	15.25886	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-9982	NM_012135	26240	Hs.140944	NM_012135	HPRD:16883	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
19-PTNLD28-TUMOR_peak_39405	chr16	88897670	88898469	+	15.25886	NA	intron (NM_000512, intron 9 of 13)	CpG	-19727	NM_001030018	353	Hs.28914	NM_000485	HPRD:00029	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_7185	chr1	155196824	155196971	+	15.25751	NA	intron (NR_002188, intron 1 of 12)	L2c|LINE|L2	428	NR_002188	2630	Hs.719930	NR_002188	ENSG00000160766	GBAP1	GBAP	glucosidase, beta, acid pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_26795	chr12	122250333	122250543	+	15.25678	NA	intron (NM_015048, intron 5 of 16)	intron (NM_015048, intron 5 of 16)	7800	NM_015048	23067	Hs.507122	NM_015048	ENSG00000139718	SETD1B	KMT2G|Set1B	SET domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_56561	chr2	160012377	160012537	+	15.25646	NA	intron (NM_001145909, intron 7 of 26)	intron (NM_001145909, intron 7 of 26)	-30889	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_22794	chr12	6747436	6747842	+	15.25646	NA	intron (NM_032489, intron 9 of 9)	intron (NM_032489, intron 9 of 9)	-2342	NM_020400	57121	Hs.155538	NM_020400	HPRD:09495	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_19972	chr11	73661993	73662169	+	15.25646	NA	5' UTR (NM_153614, exon 1 of 8)	5' UTR (NM_153614, exon 1 of 8)	717	NM_153614	374407	Hs.567888	NM_153614	HPRD:15573	DNAJB13	RSPH16A|TSARG5|TSARG6	DnaJ (Hsp40) homolog, subfamily B, member 13	protein-coding
19-PTNLD28-TUMOR_peak_38702	chr16	74440904	74441447	+	15.25646	NA	Intergenic	CpG	14193	NM_001011880	497190	Hs.454670	NM_001011880	HPRD:17419	CLEC18B	MRCL2	C-type lectin domain family 18, member B	protein-coding
19-PTNLD28-TUMOR_peak_49480	chr19	46768629	46768760	+	15.25502	NA	intron (NR_046936, intron 3 of 3)	intron (NR_046936, intron 3 of 3)	-31609	NM_152795	64344	Hs.420830	NM_022462	HPRD:17104	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_107837	chrX	24665443	24665582	+	15.25502	NA	promoter-TSS (NM_004845)	promoter-TSS (NM_004845)	-57	NM_001163265	9468	Hs.660708	NM_004845	HPRD:05376	PCYT1B	CCTB|CTB	phosphate cytidylyltransferase 1, choline, beta	protein-coding
19-PTNLD28-TUMOR_peak_64645	chr22	23035404	23035594	+	15.25502	NA	Intergenic	Intergenic	46717	NM_199127	91227	Hs.450000	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_68489	chr3	55914501	55914663	+	15.25502	NA	intron (NM_015576, intron 13 of 16)	intron (NM_015576, intron 13 of 16)	-27960	NR_037502	100500875		NR_037502		MIR3938	-	microRNA 3938	ncRNA
19-PTNLD28-TUMOR_peak_93907	chr7	91388684	91388846	+	15.25502	NA	Intergenic	L1PA7|LINE|L1	121269	NM_001301135	7978	Hs.532216	NM_006980	HPRD:08373	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
19-PTNLD28-TUMOR_peak_81758	chr5	119940657	119940817	+	15.25502	NA	intron (NM_016644, intron 2 of 2)	L1PA16|LINE|L1	140764	NM_001300783	51334	Hs.157461	NM_016644	HPRD:14239	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
19-PTNLD28-TUMOR_peak_102449	chr9	21549569	21549696	+	15.25502	NA	intron (NR_027054, intron 1 of 3)	intron (NR_027054, intron 1 of 3)	10065	NR_027054	554202	Hs.458096	NR_027054		MIR31HG	-	MIR31 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20496	chr11	87979978	87980132	+	15.25502	NA	Intergenic	Intergenic	-71420	NM_022337	23682	Hs.591975	NM_022337	HPRD:05889	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_97956	chr8	29197813	29198015	+	15.25502	NA	intron (NM_001394, intron 1 of 3)	intron (NM_001394, intron 1 of 3)	8408	NM_057158	1846	Hs.417962	NM_001394	HPRD:04123	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
19-PTNLD28-TUMOR_peak_76900	chr4	123414536	123414671	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	-36953	NM_000586	3558	Hs.89679	NM_000586		IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
19-PTNLD28-TUMOR_peak_69227	chr3	83667725	83667878	+	15.25502	NA	Intergenic	LTR14C|LTR|ERVK	1250925	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
19-PTNLD28-TUMOR_peak_44435	chr18	7784250	7784456	+	15.25502	NA	intron (NM_001105244, intron 2 of 32)	MER65C|LTR|ERV1	217039	NM_001105244	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_46046	chr18	59182164	59182328	+	15.25502	NA	intron (NM_031891, intron 5 of 10)	L1HS|LINE|L1	24471	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_31489	chr14	79597967	79598088	+	15.25502	NA	intron (NR_073547, intron 14 of 20)	L1PA3|LINE|L1	-147655	NM_138970	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_66338	chr3	7424476	7424618	+	15.25502	NA	intron (NM_181874, intron 4 of 10)	intron (NM_181874, intron 4 of 10)	152424	NR_046606	100873937	Hs.570608	NR_046606		GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69411	chr3	99418748	99418924	+	15.25502	NA	intron (NM_001850, intron 2 of 4)	MER5A1|DNA|hAT-Charlie	61396	NM_001850	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_93021	chr7	68394809	68395019	+	15.25502	NA	Intergenic	L2c|LINE|L2	667567	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_23686	chr12	32607077	32607250	+	15.25502	NA	Intergenic	Intergenic	-47878	NM_139241	121512	Hs.117835	NM_139241	HPRD:16891	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_104845	chr9	99967916	99968078	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	-32711	NR_036527	57653	Hs.435629	NR_036527		LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
19-PTNLD28-TUMOR_peak_33075	chr15	37307326	37307478	+	15.25502	NA	intron (NM_001220482, intron 9 of 12)	intron (NM_001220482, intron 9 of 12)	-42300	NR_107030	102466875		NR_107030		MIR8063	hsa-mir-8063	microRNA 8063	ncRNA
19-PTNLD28-TUMOR_peak_59827	chr20	11482774	11482961	+	15.25502	NA	Intergenic	LTR16E2|LTR|ERVL	-228836	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_57889	chr2	203623471	203623639	+	15.25502	NA	intron (NM_173511, intron 6 of 7)	intron (NM_173511, intron 6 of 7)	70402	NM_001288624	130026	Hs.516629	NM_138468	HPRD:12446	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_66317	chr3	6247939	6248193	+	15.25502	NA	Intergenic	Intergenic	599070	NR_110123	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_31492	chr14	79995530	79995733	+	15.25502	NA	intron (NM_001272020, intron 2 of 5)	LTR2B|LTR|ERV1	249949	NR_073546	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_108926	chrX	95229917	95230321	+	15.25502	NA	Intergenic	L1PBa1|LINE|L1	362782	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99343	chr8	82178827	82178967	+	15.25502	NA	Intergenic	Intergenic	-13821	NM_001444	2171	Hs.408061	NM_001444	HPRD:05524	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5 (psoriasis-associated)	protein-coding
19-PTNLD28-TUMOR_peak_93832	chr7	87986696	87986865	+	15.25502	NA	Intergenic	Intergenic	-50552	NM_001205315	79689	Hs.521008	NM_024636	HPRD:11637	STEAP4	STAMP2|TIARP|TNFAIP9	STEAP family member 4	protein-coding
19-PTNLD28-TUMOR_peak_109147	chrX	109090619	109090956	+	15.25502	NA	Intergenic	Intergenic	-114166	NM_004458	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_81393	chr5	102905106	102905318	+	15.25502	NA	Intergenic	LTR16C|LTR|ERVL	-6710	NM_031438	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_16087	chr10	125454556	125454899	+	15.25502	NA	3' UTR (NM_153442, exon 3 of 3)	3' UTR (NM_153442, exon 3 of 3)	28856	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
19-PTNLD28-TUMOR_peak_1277	chr1	20693725	20693871	+	15.25502	NA	intron (NR_033887, intron 10 of 11)	L2a|LINE|L2	61489	NR_033887	339505	Hs.633269	NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
19-PTNLD28-TUMOR_peak_68448	chr3	54663252	54663359	+	15.25502	NA	intron (NM_018398, intron 10 of 37)	MIRb|SINE|MIR	10579	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_30263	chr14	51750184	51750363	+	15.25502	NA	Intergenic	Intergenic	43387	NM_030755	81542	Hs.125221	NM_030755		TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin-related transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27103	chr12	127600116	127600232	+	15.25502	NA	Intergenic	Intergenic	-55232	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_62910	chr21	19520073	19520231	+	15.25502	NA	intron (NM_001204176, intron 2 of 6)	MLT1L|LTR|ERVL-MaLR	-96998	NM_024944	140578	Hs.283725	NM_024944	HPRD:06261	CHODL	C21orf68|MT75	chondrolectin	protein-coding
19-PTNLD28-TUMOR_peak_12267	chr10	19927636	19927776	+	15.25502	NA	intron (NM_001142308, intron 36 of 39)	intron (NM_001142308, intron 36 of 39)	89773	NR_120646	101928834	Hs.676482	NR_120646	ENSG00000233968	LOC101928834	-	uncharacterized LOC101928834	ncRNA
19-PTNLD28-TUMOR_peak_12516	chr10	26047024	26047180	+	15.25502	NA	Intergenic	Intergenic	106461	NR_108067	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_32021	chr14	100246232	100246368	+	15.25502	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-13445	NM_004434	2009	Hs.12451	NM_004434	HPRD:03613	EML1	ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_20115	chr11	75514357	75514519	+	15.25502	NA	Intergenic	Intergenic	-11774	NM_003369	7405	Hs.202470	NM_003369		UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
19-PTNLD28-TUMOR_peak_77214	chr4	140619582	140619752	+	15.25502	NA	intron (NM_001204366, intron 3 of 5)	CpG	32745	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_102435	chr9	21111028	21111196	+	15.25502	NA	Intergenic	Intergenic	31032	NM_002177	3467	Hs.73010	NM_002177	HPRD:00944	IFNW1	-	interferon, omega 1	protein-coding
19-PTNLD28-TUMOR_peak_60610	chr20	32481283	32481418	+	15.25502	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	82240	NM_176812	128866	Hs.472471	NM_176812	HPRD:16642	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
19-PTNLD28-TUMOR_peak_28138	chr13	46700796	46700982	+	15.25502	NA	3' UTR (NM_002298, exon 16 of 16)	3' UTR (NM_002298, exon 16 of 16)	-21678	NM_001278541	1361	Hs.512937	NM_001872	HPRD:04374	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2 (plasma)	protein-coding
19-PTNLD28-TUMOR_peak_57368	chr2	187212241	187212455	+	15.25502	NA	Intergenic	Intergenic	-138537	NM_018471	55854	Hs.741180	NM_018471	HPRD:13988	ZC3H15	HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
19-PTNLD28-TUMOR_peak_103512	chr9	68175240	68175379	+	15.25502	NA	Intergenic	LTR16B|LTR|ERVL	248514	NM_001012419	441425	Hs.632663	NM_001012419	HPRD:17405	ANKRD20A3	-	ankyrin repeat domain 20 family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_13835	chr10	63541923	63542058	+	15.25502	NA	Intergenic	Intergenic	-119023	NM_032199	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_95554	chr7	135235063	135235191	+	15.25502	NA	Intergenic	Intergenic	-7535	NM_015135	23165	Hs.743250	NM_015135	HPRD:17653	NUP205	C7orf14	nucleoporin 205kDa	protein-coding
19-PTNLD28-TUMOR_peak_30203	chr14	50548386	50548527	+	15.25502	NA	Intergenic	Intergenic	10905	NM_001014830	196913	Hs.406934	NM_001014830	HPRD:18572	C14orf183	-	chromosome 14 open reading frame 183	protein-coding
19-PTNLD28-TUMOR_peak_102417	chr9	20640535	20640694	+	15.25502	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-17694	NM_017794	54914	Hs.136247	NM_017794	HPRD:11162	FOCAD	KIAA1797	focadhesin	protein-coding
19-PTNLD28-TUMOR_peak_97090	chr8	9661442	9661642	+	15.25502	NA	Intergenic	HERVH-int|LTR|ERV1	62360	NR_030327	693182		NR_030327		MIR597	MIRN597|hsa-mir-597	microRNA 597	ncRNA
19-PTNLD28-TUMOR_peak_99320	chr8	81599430	81599678	+	15.25502	NA	exon (NM_001033723, exon 4 of 9)	exon (NM_001033723, exon 4 of 9)	187462	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
19-PTNLD28-TUMOR_peak_107625	chrX	14827805	14827915	+	15.25502	NA	Intergenic	L1PA6|LINE|L1	63324	NM_001018113	2187	Hs.554740	NM_152633	HPRD:06557	FANCB	FA2|FAAP90|FAAP95|FAB|FACB	Fanconi anemia, complementation group B	protein-coding
19-PTNLD28-TUMOR_peak_45167	chr18	31733757	31733947	+	15.25502	NA	intron (NM_001198546, intron 1 of 9)	MLT1J1|LTR|ERVL-MaLR	68582	NM_001198547	8715	Hs.514795	NM_003787	HPRD:04657	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
19-PTNLD28-TUMOR_peak_95071	chr7	127538179	127538374	+	15.25502	NA	intron (NM_014390, intron 13 of 23)	intron (NM_014390, intron 13 of 23)	-99286	NR_027330	27099	Hs.657377	NM_014411		SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_94966	chr7	120224015	120224292	+	15.25502	NA	intron (NM_012281, intron 1 of 5)	intron (NM_012281, intron 1 of 5)	274024	NM_012338	23554	Hs.16529	NM_012338	HPRD:15509	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
19-PTNLD28-TUMOR_peak_28169	chr13	47378547	47378718	+	15.25502	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-7265	NM_001984	2098	Hs.432491	NM_001984	HPRD:00588	ESD	FGH	esterase D	protein-coding
19-PTNLD28-TUMOR_peak_57026	chr2	174455112	174455351	+	15.25502	NA	Intergenic	Intergenic	235670	NM_145810	83879	Hs.470654	NM_031942	HPRD:09874	CDCA7	JPO1	cell division cycle associated 7	protein-coding
19-PTNLD28-TUMOR_peak_68460	chr3	55085609	55085754	+	15.25502	NA	intron (NM_018398, intron 35 of 37)	L1PA2|LINE|L1	-123609	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_12263	chr10	19790033	19790175	+	15.25502	NA	intron (NM_001142308, intron 31 of 39)	L2a|LINE|L2	227375	NR_120646	101928834	Hs.676482	NR_120646	ENSG00000233968	LOC101928834	-	uncharacterized LOC101928834	ncRNA
19-PTNLD28-TUMOR_peak_52482	chr2	44776357	44776473	+	15.25502	NA	TTS (NR_039629)	TTS (NR_039629)	244	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_1256	chr1	20275646	20275805	+	15.25502	NA	Intergenic	LTR79|LTR|ERVL	-25615	NM_014589	30814	Hs.272372	NM_014589		PLA2G2E	GIIE sPLA2|sPLA2-IIE	phospholipase A2, group IIE	protein-coding
19-PTNLD28-TUMOR_peak_68748	chr3	63946230	63946403	+	15.25502	NA	intron (NM_001177387, intron 4 of 12)	L2a|LINE|L2	-7104	NM_001128149	6314	Hs.476595	NM_000333	HPRD:06365	ATXN7	ADCAII|OPCA3|SCA7	ataxin 7	protein-coding
19-PTNLD28-TUMOR_peak_38821	chr16	77565669	77565920	+	15.25502	NA	Intergenic	LTR16E1|LTR|ERVL	-96783	NM_199355	170692	Hs.188746	NM_139054	HPRD:06333	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif, 18	protein-coding
19-PTNLD28-TUMOR_peak_38558	chr16	70595573	70595777	+	15.25502	NA	exon (NM_012426, exon 17 of 26)	exon (NM_012426, exon 17 of 26)	-18123	NM_001172771	146433	Hs.461214	NM_152456	HPRD:14582	IL34	C16orf77|IL-34	interleukin 34	protein-coding
19-PTNLD28-TUMOR_peak_103669	chr9	71669203	71669342	+	15.25502	NA	intron (NM_181425, intron 3 of 4)	intron (NM_181425, intron 3 of 4)	18793	NM_001161706	2395	Hs.20685	NM_000144	HPRD:06013	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
19-PTNLD28-TUMOR_peak_25089	chr12	67082743	67082886	+	15.25502	NA	Intergenic	Intergenic	-9889	NM_021150	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_99678	chr8	99913747	99913956	+	15.25502	NA	intron (NM_001256312, intron 1 of 12)	intron (NM_001256312, intron 1 of 12)	40948	NM_001256312	6788	Hs.492333	NM_006281	HPRD:05433	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_27625	chr13	29937244	29937389	+	15.25502	NA	intron (NM_001033602, intron 6 of 13)	intron (NM_001033602, intron 6 of 13)	-65461	NM_015233	23281	Hs.22287	NM_015233		MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated tumor suppressor candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_28543	chr13	77866020	77866212	+	15.25502	NA	intron (NM_015057, intron 2 of 82)	intron (NM_015057, intron 2 of 82)	35061	NM_015057	23077	Hs.591221	NM_015057	HPRD:10104	MYCBP2	PAM	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_93833	chr7	88294041	88294354	+	15.25502	NA	Intergenic	Intergenic	-94556	NM_181646	219578	Hs.684410	NM_181646	HPRD:08721	ZNF804B	-	zinc finger protein 804B	protein-coding
19-PTNLD28-TUMOR_peak_107618	chrX	14152041	14152420	+	15.25502	NA	Intergenic	Intergenic	-104195	NM_001042480	54960	Hs.592237	NM_017856	HPRD:06533	GEMIN8	FAM51A1	gem (nuclear organelle) associated protein 8	protein-coding
19-PTNLD28-TUMOR_peak_81465	chr5	107978101	107978238	+	15.25502	NA	Intergenic	MER20|DNA|hAT-Charlie	85793	NR_046368	100652853	Hs.133009	NR_046368	ENSG00000272523	LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
19-PTNLD28-TUMOR_peak_97736	chr8	25177512	25177642	+	15.25502	NA	intron (NM_024940, intron 15 of 51)	MIRc|SINE|MIR	-25341	NR_106936	102465527		NR_106936		MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
19-PTNLD28-TUMOR_peak_45320	chr18	36994329	36994533	+	15.25502	NA	intron (NR_024391, intron 3 of 3)	intron (NR_024391, intron 3 of 3)	-262254	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_68673	chr3	61613552	61613802	+	15.25502	NA	intron (NM_002841, intron 1 of 29)	intron (NM_002841, intron 1 of 29)	66434	NM_002841	5793	Hs.595541	NM_002841		PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase, receptor type, G	protein-coding
19-PTNLD28-TUMOR_peak_41050	chr17	33036086	33036424	+	15.25502	NA	Intergenic	Intergenic	128487	NM_207313	124842	Hs.310482	NM_207313	HPRD:14030	TMEM132E	-	transmembrane protein 132E	protein-coding
19-PTNLD28-TUMOR_peak_7976	chr1	167370609	167370806	+	15.25502	NA	exon (NM_002697, exon 13 of 16)	exon (NM_002697, exon 13 of 16)	72426	NM_001198783	5451	Hs.283402	NM_002697	HPRD:01250	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_16994	chr11	8808963	8809132	+	15.25502	NA	intron (NR_120590, intron 4 of 4)	intron (NR_120590, intron 4 of 4)	18722	NR_120590	102724784	Hs.613276	NR_120590		LOC102724784	-	uncharacterized LOC102724784	ncRNA
19-PTNLD28-TUMOR_peak_79408	chr5	33631986	33632116	+	15.25502	NA	intron (NM_030955, intron 12 of 23)	intron (NM_030955, intron 12 of 23)	191169	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_81841	chr5	123529180	123529448	+	15.25502	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	244899	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_101214	chr8	135563745	135564019	+	15.25502	NA	intron (NM_001029939, intron 12 of 16)	intron (NM_001029939, intron 12 of 16)	-46432	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49023	chr19	40054153	40054300	+	15.25502	NA	Intergenic	L1M1|LINE|L1	-23388	NM_153232	163126	Hs.18949	NM_153232		EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
19-PTNLD28-TUMOR_peak_44456	chr18	8685721	8685911	+	15.25502	NA	Intergenic	Intergenic	21803	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_48381	chr19	29381308	29381463	+	15.25502	NA	Intergenic	Intergenic	-74653	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
19-PTNLD28-TUMOR_peak_15706	chr10	114859736	114859993	+	15.25502	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	149855	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_52264	chr2	39697215	39697325	+	15.25502	NA	intron (NR_037875, intron 3 of 5)	intron (NR_037875, intron 3 of 5)	32713	NR_037875	728730	Hs.655344	NR_037875	ENSG00000231312	LOC728730	-	uncharacterized LOC728730	ncRNA
19-PTNLD28-TUMOR_peak_77924	chr4	165569446	165569578	+	15.25502	NA	intron (NR_049864, intron 2 of 2)	intron (NR_049864, intron 2 of 2)	-105771	NR_038834	100505989	Hs.328236	NR_038834	ENSG00000248771	LINC01207	-	long intergenic non-protein coding RNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_108875	chrX	86225100	86225226	+	15.25502	NA	Intergenic	L1PA2|LINE|L1	-547552	NM_019117	56062	Hs.49075	NM_019117	HPRD:02283	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_78127	chr4	177414253	177414383	+	15.25502	NA	Intergenic	Intergenic	173228	NM_021928	60559	Hs.42194	NM_021928	HPRD:08001	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_43178	chr17	68546409	68546587	+	15.25502	NA	Intergenic	L1HS|LINE|L1	380822	NM_000891	3759	Hs.1547	NM_000891	HPRD:02815	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92165	chr7	42332570	42332867	+	15.25502	NA	Intergenic	Intergenic	-56100	NM_000168	2737	Hs.21509	NM_000168	HPRD:01313	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_57571	chr2	194698776	194698897	+	15.25502	NA	Intergenic	L1PA5|LINE|L1	-510157	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LOC101927406	-	uncharacterized LOC101927406	ncRNA
19-PTNLD28-TUMOR_peak_27947	chr13	41172841	41172976	+	15.25502	NA	intron (NM_002015, intron 1 of 2)	MER5A1|DNA|hAT-Charlie	67826	NM_002015	2308	Hs.370666	NM_002015	HPRD:00645	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
19-PTNLD28-TUMOR_peak_38116	chr16	58270423	58270547	+	15.25502	NA	Intergenic	LTR33|LTR|ERVL	-13355	NM_001142302	29070	Hs.11614	NM_014157	HPRD:07121	CCDC113	-	coiled-coil domain containing 113	protein-coding
19-PTNLD28-TUMOR_peak_65154	chr22	31957366	31957526	+	15.25502	NA	intron (NM_001007467, intron 8 of 32)	intron (NM_001007467, intron 8 of 32)	60071	NR_106959	102465666		NR_106959		MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
19-PTNLD28-TUMOR_peak_79830	chr5	52107003	52107153	+	15.25502	NA	intron (NM_181501, intron 1 of 28)	MIR3|SINE|MIR	22942	NM_181501	3672	Hs.644352	NM_181501		ITGA1	CD49a|VLA1	integrin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_88146	chr6	56962519	56962687	+	15.25502	NA	intron (NM_001257273, intron 2 of 3)	intron (NM_001257273, intron 2 of 3)	7775	NM_015555	26036	Hs.485628	NM_015555	HPRD:10332	ZNF451	COASTER|dJ417I1.1	zinc finger protein 451	protein-coding
19-PTNLD28-TUMOR_peak_94868	chr7	112308656	112308870	+	15.25502	NA	intron (NR_110158, intron 5 of 7)	intron (NR_110158, intron 5 of 7)	46327	NR_110158	101928012	Hs.521131	NR_110158	ENSG00000223646	LOC101928012	-	uncharacterized LOC101928012	ncRNA
19-PTNLD28-TUMOR_peak_59005	chr2	236303192	236303407	+	15.25502	NA	Intergenic	Intergenic	-99434	NM_001037131	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_58198	chr2	213195141	213195328	+	15.25502	NA	intron (NM_005235, intron 1 of 27)	AluJr|SINE|Alu	95850	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
19-PTNLD28-TUMOR_peak_59526	chr20	2903636	2903991	+	15.25502	NA	promoter-TSS (NM_080841)	promoter-TSS (NM_080841)	-40	NM_080841	5786	Hs.269577	NM_002836	HPRD:01476	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase, receptor type, A	protein-coding
19-PTNLD28-TUMOR_peak_31111	chr14	70784679	70784839	+	15.25502	NA	Intergenic	Intergenic	41689	NM_001204090	51241	Hs.709581	NM_016468	HPRD:16591	COX16	C14orf112	COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_31502	chr14	81421274	81421574	+	15.25502	NA	promoter-TSS (NM_000369)	promoter-TSS (NM_000369)	-445	NM_001018036	7253	Hs.160411	NM_000369	HPRD:04537	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_107698	chrX	17872288	17872686	+	15.25502	NA	intron (NM_001172743, intron 1 of 2)	intron (NM_001172743, intron 1 of 2)	6460	NR_033348	10742	Hs.446680	NM_021785	HPRD:02199	RAI2	-	retinoic acid induced 2	protein-coding
19-PTNLD28-TUMOR_peak_107772	chrX	21765644	21765849	+	15.25502	NA	intron (NR_045617, intron 2 of 5)	intron (NR_045617, intron 2 of 5)	10532	NM_014332	23676	Hs.86492	NM_014332	HPRD:02204	SMPX	DFN6|DFNX4	small muscle protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_59629	chr20	4527549	4527711	+	15.25502	NA	Intergenic	Intergenic	-139167	NM_001080121	5621	Hs.472010	NM_000311	HPRD:01453	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
19-PTNLD28-TUMOR_peak_91899	chr7	32467404	32467551	+	15.25502	NA	Intergenic	CpG	30629	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1210	chr1	19530029	19530174	+	15.25502	NA	intron (NM_020765, intron 1 of 105)	intron (NM_020765, intron 1 of 105)	6645	NM_020765	23352	Hs.148078	NM_020765	HPRD:10184	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
19-PTNLD28-TUMOR_peak_29100	chr13	111607517	111607809	+	15.25502	NA	Intergenic	MER89|LTR|ERV1	-40209	NM_001286721	55608	Hs.525163	NM_017664	HPRD:12455	ANKRD10	-	ankyrin repeat domain 10	protein-coding
19-PTNLD28-TUMOR_peak_45763	chr18	48417863	48418087	+	15.25502	NA	intron (NM_001168335, intron 1 of 13)	LTR49-int|LTR|ERV1	12543	NM_002396	4200	Hs.233119	NM_002396		ME2	ODS1	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_21711	chr11	121909390	121909592	+	15.25502	NA	Intergenic	Intergenic	61061	NR_029671	406911		NR_029671	miRBase:MI0000446	MIR125B1	MIRN125B1	microRNA 125b-1	ncRNA
19-PTNLD28-TUMOR_peak_77608	chr4	152709313	152709483	+	15.25502	NA	Intergenic	Intergenic	-27223	NM_004564	5188	Hs.119316	NM_004564	HPRD:04706	GATB	PET112|PET112L	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_25019	chr12	65330112	65330245	+	15.25502	NA	intron (NR_033988, intron 2 of 2)	intron (NR_033988, intron 2 of 2)	52624	NR_033988	400046	Hs.591032	NR_033988	ENSG00000255693	FLJ41278	-	uncharacterized LOC400046	ncRNA
19-PTNLD28-TUMOR_peak_77702	chr4	154500700	154500856	+	15.25502	NA	intron (NM_015196, intron 7 of 34)	AluJb|SINE|Alu	-104663	NM_003264	7097	Hs.519033	NM_003264		TLR2	CD282|TIL4	toll-like receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_68594	chr3	58258023	58258137	+	15.25502	NA	intron (NM_020676, intron 5 of 8)	intron (NM_020676, intron 5 of 8)	-33892	NR_049758	11102	Hs.446320	NM_007042	HPRD:18001	RPP14	P14	ribonuclease P/MRP 14kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_45262	chr18	34756530	34756807	+	15.25502	NA	intron (NM_020776, intron 9 of 9)	intron (NM_020776, intron 9 of 9)	-347489	NM_015476	25941	Hs.436636	NM_015476	HPRD:12684	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_38670	chr16	72972809	72972958	+	15.25502	NA	intron (NM_001164766, intron 2 of 8)	intron (NM_001164766, intron 2 of 8)	109391	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_85835	chr6	20292026	20292165	+	15.25502	NA	Intergenic	Intergenic	-79400	NM_001080480	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_35439	chr15	99613575	99613823	+	15.25502	NA	Intergenic	MIR|SINE|MIR	-31587	NM_015286	23336	Hs.207106	NM_015286	HPRD:07305	SYNM	DMN|SYN	synemin, intermediate filament protein	protein-coding
19-PTNLD28-TUMOR_peak_33839	chr15	60966165	60966390	+	15.25502	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-7491	NR_120319	100996876	Hs.511626	NR_120318		LOC100996876	-	uncharacterized LOC100996876	ncRNA
19-PTNLD28-TUMOR_peak_34782	chr15	81001963	81002161	+	15.25502	NA	intron (NM_021214, intron 1 of 2)	L2|LINE|L2	14410	NM_021214	58489	Hs.459072	NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C	protein-coding
19-PTNLD28-TUMOR_peak_89578	chr6	136257902	136258039	+	15.25502	NA	intron (NM_018945, intron 1 of 12)	intron (NM_018945, intron 1 of 12)	85136	NM_018945	27115	Hs.744230	NM_018945	HPRD:06870	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
19-PTNLD28-TUMOR_peak_75534	chr4	64398639	64398863	+	15.25502	NA	Intergenic	L1PA2|LINE|L1	876427	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
19-PTNLD28-TUMOR_peak_97727	chr8	24272607	24272745	+	15.25502	NA	intron (NR_125808, intron 1 of 5)	intron (NR_125808, intron 1 of 5)	-25833	NM_003817	8756	Hs.116147	NM_003817	HPRD:07391	ADAM7	ADAM 7|ADAM-7|EAPI|GP-83|GP83	ADAM metallopeptidase domain 7	protein-coding
19-PTNLD28-TUMOR_peak_35077	chr15	88007463	88007582	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	-112638	NR_026869	145978	Hs.350808	NM_152454	HPRD:08101	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
19-PTNLD28-TUMOR_peak_81112	chr5	90397734	90397918	+	15.25502	NA	intron (NR_003149, intron 86 of 89)	intron (NR_003149, intron 86 of 89)	212393	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_71588	chr3	148991014	148991155	+	15.25502	NA	Intergenic	Intergenic	-51252	NR_046371	1356	Hs.558314	NM_000096	HPRD:00317	CP	CP-2	ceruloplasmin (ferroxidase)	protein-coding
19-PTNLD28-TUMOR_peak_105773	chr9	122160697	122160949	+	15.25502	NA	Intergenic	L2b|LINE|L2	-29084	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_27359	chr13	20832667	20832798	+	15.25502	NA	Intergenic	Intergenic	-26198	NM_001110219	10804	Hs.511757	NM_006783	HPRD:05107	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	gap junction protein, beta 6, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_39929	chr17	6766273	6766489	+	15.25502	NA	intron (NR_002710, intron 2 of 13)	L1PA15|LINE|L1	9486	NR_002710	245	Hs.378695	NR_002710		ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_71859	chr3	155382829	155383108	+	15.25502	NA	intron (NM_014996, intron 1 of 21)	MLT1J2|LTR|ERVL-MaLR	11137	NM_001130961	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_65451	chr22	38187933	38188086	+	15.25502	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-13105	NM_005318	3005	Hs.745024	NM_005318	HPRD:00819	H1F0	H10|H1FV	H1 histone family, member 0	protein-coding
19-PTNLD28-TUMOR_peak_81422	chr5	105506927	105507161	+	15.25502	NA	Intergenic	Intergenic	839671	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_108751	chrX	73137280	73137439	+	15.25502	NA	Intergenic	Intergenic	-26800	NR_024582	554203	Hs.648316	NR_024582	ENSG00000225470	JPX	DCBALD06|ENOX|LINC00183|NCRNA00183	JPX transcript, XIST activator (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_1179	chr1	18124646	18124819	+	15.25502	NA	intron (NM_030812, intron 1 of 2)	intron (NM_030812, intron 1 of 2)	42924	NM_030812	81569	Hs.2149	NM_030812	HPRD:11274	ACTL8	CT57	actin-like 8	protein-coding
19-PTNLD28-TUMOR_peak_27464	chr13	24173638	24173858	+	15.25502	NA	intron (NM_148957, intron 3 of 9)	MER4B|LTR|ERV1	20249	NM_001204458	55504	Hs.149168	NM_018647	HPRD:05838	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	tumor necrosis factor receptor superfamily, member 19	protein-coding
19-PTNLD28-TUMOR_peak_14619	chr10	82204562	82204680	+	15.25502	NA	Intergenic	Intergenic	-9417	NM_030927	81619	Hs.718943	NM_030927	HPRD:18196	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
19-PTNLD28-TUMOR_peak_109079	chrX	106361755	106362181	+	15.25502	NA	promoter-TSS (NM_018301)	promoter-TSS (NM_018301)	89	NM_018301	55285	Hs.139053	NM_018301		RBM41	-	RNA binding motif protein 41	protein-coding
19-PTNLD28-TUMOR_peak_70800	chr3	130478711	130478919	+	15.25502	NA	Intergenic	Intergenic	-13119	NM_014602	30849	Hs.149032	NM_014602	HPRD:04010	PIK3R4	VPS15|p150	phosphoinositide-3-kinase, regulatory subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_40358	chr17	17013340	17013467	+	15.25502	NA	intron (NM_015134, intron 3 of 22)	MSTB1|LTR|ERVL-MaLR	67329	NM_015134	23164	Hs.462341	NM_015134	HPRD:17591	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_93602	chr7	78806298	78806423	+	15.25502	NA	intron (NM_001301128, intron 1 of 20)	intron (NM_001301128, intron 1 of 20)	168056	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_104088	chr9	83814649	83814792	+	15.25502	NA	Intergenic	Intergenic	488876	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_83336	chr5	152752455	152752647	+	15.25502	NA	Intergenic	Intergenic	-117533	NM_001258020	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_20697	chr11	95449027	95449196	+	15.25502	NA	Intergenic	Intergenic	73843	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_15271	chr10	102950842	102951094	+	15.25502	NA	non-coding (NR_120620, exon 4 of 6)	non-coding (NR_120620, exon 4 of 6)	14889	NR_120620	101927396	Hs.551648	NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
19-PTNLD28-TUMOR_peak_109403	chrX	128691020	128691146	+	15.25502	NA	intron (NM_001587, intron 4 of 22)	intron (NM_001587, intron 4 of 22)	16831	NM_000276	4952	Hs.126357	NM_000276	HPRD:02395	OCRL	INPP5F|LOCR|NPHL2|OCRL-1|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding
19-PTNLD28-TUMOR_peak_52920	chr2	59049926	59050049	+	15.25502	NA	intron (NR_033873, intron 2 of 13)	LTR13A|LTR|ERVK	302099	NR_033873	400955	Hs.503210	NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA
19-PTNLD28-TUMOR_peak_84412	chr5	177880379	177880529	+	15.25502	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	137102	NM_173465	91522	Hs.660026	NM_173465	HPRD:16733	COL23A1	-	collagen, type XXIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_108137	chrX	46558274	46558456	+	15.25502	NA	intron (NM_001257291, intron 1 of 16)	intron (NM_001257291, intron 1 of 16)	60242	NM_032591	84679	Hs.91389	NM_032591		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
19-PTNLD28-TUMOR_peak_99365	chr8	85031250	85031542	+	15.25502	NA	Intergenic	Intergenic	-64057	NM_001100393	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_56901	chr2	171298266	171298512	+	15.25502	NA	intron (NR_045684, intron 22 of 34)	MER41B|LTR|ERV1	-90936	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
19-PTNLD28-TUMOR_peak_74928	chr4	37630682	37630881	+	15.25502	NA	intron (NM_001085400, intron 6 of 6)	intron (NM_001085400, intron 6 of 6)	44926	NM_018302	55286	Hs.107527	NM_018302	HPRD:07725	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
19-PTNLD28-TUMOR_peak_70014	chr3	118668317	118668476	+	15.25502	NA	intron (NM_152538, intron 3 of 8)	intron (NM_152538, intron 3 of 8)	6473	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51578	chr2	24925752	24925929	+	15.25502	NA	intron (NM_147233, intron 9 of 20)	intron (NM_147233, intron 9 of 20)	-90335	NM_001199803	79172	Hs.731569	NM_024322	HPRD:14414	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
19-PTNLD28-TUMOR_peak_33480	chr15	48042727	48042897	+	15.25502	NA	intron (NM_153619, intron 1 of 17)	intron (NM_153619, intron 1 of 17)	32126	NM_024966	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_69179	chr3	77955308	77955605	+	15.25502	NA	Intergenic	Intergenic	808293	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout, axon guidance receptor, homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44926	chr18	21365037	21365320	+	15.25502	NA	intron (NM_198129, intron 12 of 74)	LTR67B|LTR|ERVL	-87806	NM_001127718	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_45917	chr18	55789238	55789442	+	15.25502	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-27225	NM_001144969	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_77981	chr4	169519437	169519649	+	15.25502	NA	intron (NM_016081, intron 2 of 20)	intron (NM_016081, intron 2 of 20)	-33225	NM_001166109	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_109733	chrX	149201054	149201264	+	15.25502	NA	Intergenic	Intergenic	94393	NR_027456	100272228	Hs.496916	NR_027456	ENSG00000235703	LINC00894	-	long intergenic non-protein coding RNA 894	ncRNA
19-PTNLD28-TUMOR_peak_109715	chrX	148634447	148634589	+	15.25502	NA	Intergenic	MER11D|LTR|ERVK	8452	NM_001171909	91966	Hs.534641	NM_178124	HPRD:06625	CXorf40A	CXorf40|EOLA1	chromosome X open reading frame 40A	protein-coding
19-PTNLD28-TUMOR_peak_99113	chr8	69999162	69999413	+	15.25502	NA	intron (NR_039986, intron 1 of 4)	LTR75|LTR|ERVL	17138	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LOC100505718	-	uncharacterized LOC100505718	ncRNA
19-PTNLD28-TUMOR_peak_63028	chr21	29515116	29515289	+	15.25502	NA	Intergenic	THE1D|LTR|ERVL-MaLR	129520	NR_027246	246705	Hs.505079	NM_145180	HPRD:10778	LINC00314	C21orf94|NCRNA00314	long intergenic non-protein coding RNA 314	ncRNA
19-PTNLD28-TUMOR_peak_38161	chr16	60557068	60557200	+	15.25502	NA	Intergenic	L1PA2|LINE|L1	-163467	NM_001282301	729159		NM_001282301		LOC729159	-	UPF0607 protein ENSP00000381418-like	protein-coding
19-PTNLD28-TUMOR_peak_79234	chr5	23209118	23209254	+	15.25502	NA	Intergenic	LTR41|LTR|ERVL	-298538	NM_020227	56979	Hs.283096	NM_020227	HPRD:17905	PRDM9	MEISETZ|MSBP3|PFM6|PRMD9|ZNF899	PR domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_30909	chr14	68509373	68509520	+	15.25502	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	222950	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_94870	chr7	112410261	112410385	+	15.25502	NA	intron (NM_001287497, intron 5 of 5)	intron (NM_001287497, intron 5 of 5)	20155	NM_022484	64418	Hs.606345	NM_022484		TMEM168	-	transmembrane protein 168	protein-coding
19-PTNLD28-TUMOR_peak_110326	chrY	28400515	28400671	+	15.25502	NA	Intergenic	Intergenic	525956	NR_002176	474148	Hs.511777	NR_002176		TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_95007	chr7	123197827	123198000	+	15.25502	NA	promoter-TSS (NM_001282419)	promoter-TSS (NM_001282419)	45	NM_001282422	4698	Hs.651219	NM_005000	HPRD:03398	NDUFA5	B13|CI-13KD-B|CI-13kB|NUFM|UQOR13	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding
19-PTNLD28-TUMOR_peak_20788	chr11	100316271	100316452	+	15.25502	NA	Intergenic	Intergenic	-242046	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_102418	chr9	20646787	20646972	+	15.25502	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-11429	NM_017794	54914	Hs.136247	NM_017794	HPRD:11162	FOCAD	KIAA1797	focadhesin	protein-coding
19-PTNLD28-TUMOR_peak_46673	chr19	2702636	2702874	+	15.25502	NA	promoter-TSS (NM_052847)	promoter-TSS (NM_052847)	-9	NM_052847	2788	Hs.515544	NM_052847	HPRD:07638	GNG7	-	guanine nucleotide binding protein (G protein), gamma 7	protein-coding
19-PTNLD28-TUMOR_peak_62973	chr21	27173964	27174127	+	15.25502	NA	Intergenic	Intergenic	-66080	NM_001685	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_108660	chrX	69898808	69899004	+	15.25502	NA	intron (NM_001003811, intron 15 of 30)	SVA_D|Other|Other	-223062	NR_109801	100873930	Hs.571699	NR_046586		DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_12488	chr10	25201274	25201417	+	15.25502	NA	intron (NM_001282786, intron 3 of 7)	L1ME1|LINE|L1	40228	NM_020200	56952	Hs.405619	NM_020200	HPRD:17917	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_91372	chr7	16748779	16748974	+	15.25502	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-44475	NM_014399	27075	Hs.364544	NM_014399	HPRD:15510	TSPAN13	NET-6|NET6|TM4SF13	tetraspanin 13	protein-coding
19-PTNLD28-TUMOR_peak_89098	chr6	111238566	111238703	+	15.25502	NA	Intergenic	HERVK9-int|LTR|ERVK	-41129	NM_138408	112495	Hs.418520	NM_138408	HPRD:12886	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC, polypeptide 6, alpha 35kDa	protein-coding
19-PTNLD28-TUMOR_peak_79836	chr5	52259566	52259794	+	15.25502	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-25476	NM_002203	3673	Hs.482077	NM_002203	HPRD:01893	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_109040	chrX	103416899	103417073	+	15.25502	NA	intron (NM_207318, intron 1 of 5)	AluJb|SINE|Alu	5830	NM_207318	139231	Hs.496535	NM_207318	HPRD:10045	FAM199X	CXorf39	family with sequence similarity 199, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_89444	chr6	130280633	130280846	+	15.25502	NA	Intergenic	MER52D|LTR|ERV1	-58989	NM_032438	84456	Hs.658051	NM_032438	HPRD:11222	L3MBTL3	MBT-1|MBT1	l(3)mbt-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_13907	chr10	65263972	65264209	+	15.25502	NA	Intergenic	L2a|LINE|L2	-17033	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_88275	chr6	72842195	72842406	+	15.25502	NA	intron (NM_014989, intron 4 of 33)	MIR|SINE|MIR	-80214	NM_001168407	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_14922	chr10	94327842	94327944	+	15.25502	NA	intron (NM_004969, intron 1 of 24)	L2b|LINE|L2	5959	NM_004969	3416	Hs.500546	NM_004969	HPRD:00894	IDE	INSULYSIN	insulin-degrading enzyme	protein-coding
19-PTNLD28-TUMOR_peak_83511	chr5	157546975	157547121	+	15.25502	NA	Intergenic	Intergenic	-260865	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_27705	chr13	31293390	31293539	+	15.25502	NA	intron (NM_001204406, intron 1 of 5)	intron (NM_001204406, intron 1 of 5)	5849	NM_001204406	241	Hs.507658	NM_001629	HPRD:04742	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
19-PTNLD28-TUMOR_peak_31737	chr14	92891531	92891752	+	15.25502	NA	intron (NM_153647, intron 3 of 17)	MLT1B|LTR|ERVL-MaLR	-88484	NM_024832	79890	Hs.326822	NM_024832	HPRD:11494	RIN3	-	Ras and Rab interactor 3	protein-coding
19-PTNLD28-TUMOR_peak_109010	chrX	102617536	102617688	+	15.25502	NA	Intergenic	Intergenic	6232	NM_001006613	51186	Hs.533287	NM_016303	HPRD:06621	WBP5	TCEAL9|WEX6	WW domain binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_106071	chr9	127772830	127772937	+	15.25502	NA	intron (NM_001144877, intron 9 of 17)	L1PA3|LINE|L1	-69497	NM_002077	2800	Hs.59504	NM_002077	HPRD:03934	GOLGA1	golgin-97	golgin A1	protein-coding
19-PTNLD28-TUMOR_peak_53454	chr2	72789168	72789315	+	15.25502	NA	intron (NM_015189, intron 7 of 21)	intron (NM_015189, intron 7 of 21)	263936	NM_015189	23233	Hs.303454	NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
19-PTNLD28-TUMOR_peak_28080	chr13	45462889	45463003	+	15.25502	NA	Intergenic	AluJb|SINE|Alu	-79180	NR_038433	144817	Hs.585616	NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
19-PTNLD28-TUMOR_peak_25365	chr12	76209229	76209460	+	15.25502	NA	Intergenic	Intergenic	216212	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_12610	chr10	28682964	28683136	+	15.25502	NA	Intergenic	Intergenic	-104771	NR_107053	102465880		NR_107053		MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
19-PTNLD28-TUMOR_peak_93750	chr7	84654695	84655006	+	15.25502	NA	intron (NM_152754, intron 10 of 16)	intron (NM_152754, intron 10 of 16)	96397	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_14811	chr10	90611531	90611695	+	15.25502	NA	5' UTR (NM_144590, exon 1 of 6)	5' UTR (NM_144590, exon 1 of 6)	119	NM_144590	118932	Hs.217484	NM_144590		ANKRD22	-	ankyrin repeat domain 22	protein-coding
19-PTNLD28-TUMOR_peak_89746	chr6	142634512	142634699	+	15.25502	NA	intron (NM_001032394, intron 2 of 24)	intron (NM_001032394, intron 2 of 24)	11549	NM_001032395	57211	Hs.743302	NM_020455	HPRD:17059	GPR126	APG1|DREG|PS1TP2|VIGR	G protein-coupled receptor 126	protein-coding
19-PTNLD28-TUMOR_peak_91354	chr7	16211709	16211911	+	15.25502	NA	intron (NM_001101417, intron 8 of 8)	intron (NM_001101417, intron 8 of 8)	-38301	NR_038946	100506025	Hs.649029	NR_038946	ENSG00000229688	ISPD-AS1	-	ISPD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53905	chr2	86873578	86873735	+	15.25502	NA	intron (NM_001198954, intron 2 of 7)	L2a|LINE|L2	-22656	NM_005667	7844	Hs.469199	NM_005667	HPRD:03939	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
19-PTNLD28-TUMOR_peak_15887	chr10	119598212	119598324	+	15.25502	NA	Intergenic	L1PA2|LINE|L1	207846	NM_014904	22841	Hs.173656	NM_014904	HPRD:10548	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2 (class I)	protein-coding
19-PTNLD28-TUMOR_peak_51619	chr2	25745123	25745280	+	15.25502	NA	intron (NM_183360, intron 9 of 19)	intron (NM_183360, intron 9 of 19)	127890	NM_001256308	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_78161	chr4	182742933	182743051	+	15.25502	NA	Intergenic	Intergenic	322676	NR_027107	90768	Hs.175465	NM_178838		MGC45800	-	uncharacterized LOC90768	ncRNA
19-PTNLD28-TUMOR_peak_25748	chr12	98334579	98334693	+	15.25502	NA	Intergenic	Intergenic	54590	NR_036189	100422924		NR_036189	miRBase:MI0015834	MIR4303	-	microRNA 4303	ncRNA
19-PTNLD28-TUMOR_peak_108631	chrX	68353884	68354080	+	15.25502	NA	Intergenic	L2|LINE|L2	31383	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_21001	chr11	107720655	107720834	+	15.25502	NA	intron (NM_017515, intron 1 of 7)	intron (NM_017515, intron 1 of 7)	9170	NM_017515	54733	Hs.524014	NM_017515	HPRD:15377	SLC35F2	HSNOV1	solute carrier family 35, member F2	protein-coding
19-PTNLD28-TUMOR_peak_29424	chr14	22757558	22757714	+	15.25502	NA	Intergenic	LTR81A|LTR|Gypsy	300507	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_13328	chr10	46492827	46492992	+	15.25502	NA	Intergenic	Intergenic	127149	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_105304	chr9	112016290	112016477	+	15.25502	NA	intron (NM_018424, intron 11 of 15)	intron (NM_018424, intron 11 of 15)	66861	NM_019114	54566	Hs.591901	NM_018424	HPRD:09940	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
19-PTNLD28-TUMOR_peak_107863	chrX	28225282	28225443	+	15.25502	NA	Intergenic	L1PA2|LINE|L1	-225796	NM_001017930	139425	Hs.447365	NM_001017930	HPRD:18551	DCAF8L1	WDR42B	DDB1 and CUL4 associated factor 8-like 1	protein-coding
19-PTNLD28-TUMOR_peak_26705	chr12	121287750	121287870	+	15.25502	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	54345	NM_139015	121665	Hs.507087	NM_139015	HPRD:09744	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
19-PTNLD28-TUMOR_peak_25959	chr12	105446899	105447083	+	15.25502	NA	intron (NM_001034173, intron 10 of 22)	intron (NM_001034173, intron 10 of 22)	31350	NR_027752	160428	Hs.42572	NM_001034173	HPRD:18742	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding
19-PTNLD28-TUMOR_peak_56304	chr2	151487551	151487786	+	15.25502	NA	intron (NR_110244, intron 2 of 4)	intron (NR_110244, intron 2 of 4)	2257	NR_110245	101929282	Hs.126866	NR_110244		LOC101929282	-	uncharacterized LOC101929282	ncRNA
19-PTNLD28-TUMOR_peak_92123	chr7	40240495	40240622	+	15.25502	NA	intron (NM_024728, intron 6 of 14)	intron (NM_024728, intron 6 of 14)	65983	NM_001193312	79783	Hs.586313	NM_024728	HPRD:09859	SUGCT	C7orf10|DERP13|ORF19	succinyl-CoA:glutarate-CoA transferase	protein-coding
19-PTNLD28-TUMOR_peak_81410	chr5	104246695	104246864	+	15.25502	NA	Intergenic	LTR16A|LTR|ERVL	-188396	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_75401	chr4	56725992	56726193	+	15.25502	NA	intron (NM_001024924, intron 2 of 18)	MSTA|LTR|ERVL-MaLR	6276	NM_178237	55763	Hs.269665	NM_018261	HPRD:07615	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
19-PTNLD28-TUMOR_peak_15774	chr10	116239153	116239447	+	15.25502	NA	intron (NM_001003407, intron 8 of 21)	intron (NM_001003407, intron 8 of 21)	47385	NM_006720	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11957	chr10	8886227	8886454	+	15.25502	NA	Intergenic	HAL1|LINE|L1	-431236	NR_108039	100507163	Hs.649223	NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
19-PTNLD28-TUMOR_peak_88888	chr6	100505051	100505212	+	15.25502	NA	intron (NR_038384, intron 2 of 2)	intron (NR_038384, intron 2 of 2)	-63017	NM_032503	84539	Hs.591342	NM_032503	HPRD:12088	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin-concentrating hormone receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_64658	chr22	23298150	23298325	+	15.25502	NA	Intergenic	Intergenic	68277	NM_001178126	100423062	Hs.449585	NM_001178126	ENSG00000254709	IGLL5	-	immunoglobulin lambda-like polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_15209	chr10	101605646	101605839	+	15.25502	NA	intron (NM_000392, intron 29 of 31)	intron (NM_000392, intron 29 of 31)	63387	NM_000392	1244	Hs.368243	NM_000392	HPRD:03065	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding
19-PTNLD28-TUMOR_peak_739	chr1	11097781	11097914	+	15.25502	NA	exon (NM_006610, exon 7 of 11)	exon (NM_006610, exon 7 of 11)	9449	NM_006610	10747	Hs.655645	NM_006610	HPRD:05484	MASP2	MAP19|MASP-2|MASP1P1|sMAP	mannan-binding lectin serine peptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_74534	chr4	11637183	11637361	+	15.25502	NA	Intergenic	MIRb|SINE|MIR	-206735	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_99241	chr8	75314311	75314436	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	51755	NR_046346	54332	Hs.168950	NM_018972	HPRD:05963	GDAP1	CMT4|CMT4A|CMTRIA	ganglioside induced differentiation associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_28806	chr13	99325461	99325688	+	15.25502	NA	Intergenic	Intergenic	79355	NM_005073	6564	Hs.436893	NM_005073	HPRD:02768	SLC15A1	HPECT1|HPEPT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_29080	chr13	111243019	111243189	+	15.25502	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-24703	NR_040104	55739	Hs.408324	NM_018210	HPRD:07698	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_17490	chr11	18014581	18014768	+	15.25502	NA	intron (NR_104041, intron 6 of 9)	intron (NR_104041, intron 6 of 9)	20035	NM_012139	26297	Hs.32470	NM_012139	HPRD:06926	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_74586	chr4	14728489	14728954	+	15.25502	NA	Intergenic	Intergenic	274948	NR_038857	441009	Hs.535004	NR_038857	ENSG00000247624	CPEB2-AS1	-	CPEB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_43241	chr17	70784961	70785294	+	15.25502	NA	intron (NM_139177, intron 6 of 9)	intron (NM_139177, intron 6 of 9)	-148516	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	ncRNA
19-PTNLD28-TUMOR_peak_25358	chr12	75958291	75958475	+	15.25502	NA	Intergenic	Intergenic	-52965	NM_007043	11103	Hs.645517	NM_007043	HPRD:11027	KRR1	HRB2|RIP-1	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_77647	chr4	153650776	153650929	+	15.25502	NA	Intergenic	Intergenic	-49535	NM_152680	201799	Hs.518900	NM_152680		TMEM154	-	transmembrane protein 154	protein-coding
19-PTNLD28-TUMOR_peak_109420	chrX	129011074	129011289	+	15.25502	NA	Intergenic	Intergenic	-28916	NM_001166221	10813	Hs.458598	NM_006649	HPRD:06712	UTP14A	NYCO16|SDCCAG16|dJ537K23.3	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_15484	chr10	106052851	106053002	+	15.25502	NA	intron (NM_183239, intron 5 of 6)	intron (NM_183239, intron 5 of 6)	18039	NM_001191015	119391	Hs.107384	NM_183239	HPRD:13614	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
19-PTNLD28-TUMOR_peak_73221	chr3	190976705	190977081	+	15.25502	NA	Intergenic	LTR49-int|LTR|ERV1	46571	NM_198184	344901	Hs.526794	NM_198184	HPRD:17809	OSTN	MUSCLIN	osteocrin	protein-coding
19-PTNLD28-TUMOR_peak_15018	chr10	97268565	97268812	+	15.25502	NA	intron (NM_001290294, intron 1 of 31)	intron (NM_001290294, intron 1 of 31)	52489	NM_015385	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81051	chr5	87310815	87310999	+	15.25502	NA	Intergenic	L1PA4|LINE|L1	253789	NM_001289008	153396	Hs.379972	NM_153354	HPRD:14555	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
19-PTNLD28-TUMOR_peak_5092	chr1	97324313	97324459	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	136192	NR_125356	58155	Hs.596061	NM_021190	HPRD:12233	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_102941	chr9	36407225	36407361	+	15.25502	NA	Intergenic	Intergenic	-6098	NM_194330	152006	Hs.333503	NM_022781	HPRD:11519	RNF38	-	ring finger protein 38	protein-coding
19-PTNLD28-TUMOR_peak_108796	chrX	75548617	75548744	+	15.25502	NA	Intergenic	L1HS|LINE|L1	-99366	NM_020932	57692	Hs.8453	NM_020932	HPRD:06583	MAGEE1	DAMAGE|HCA1	melanoma antigen family E, 1	protein-coding
19-PTNLD28-TUMOR_peak_72421	chr3	173650580	173650714	+	15.25502	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-12061	NR_046664	100874010	Hs.624265	NR_046664		NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43616	chr17	75052424	75052559	+	15.25502	NA	Intergenic	CpG	-32234	NM_001204408	6397	Hs.464184	NM_003003	HPRD:03295	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_58438	chr2	219596435	219596577	+	15.25502	NA	intron (NM_014640, intron 2 of 19)	intron (NM_014640, intron 2 of 19)	20938	NM_014640	9654	Hs.471405	NM_014640	HPRD:15586	TTLL4	-	tubulin tyrosine ligase-like family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_74604	chr4	15471363	15471590	+	15.25502	NA	promoter-TSS (NM_020785)	promoter-TSS (NM_020785)	-13	NM_001080522	57545	Hs.590928	NM_020785	ENSG00000048342	CC2D2A	JBTS9|MKS6	coiled-coil and C2 domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_15142	chr10	99609787	99609924	+	15.25502	NA	promoter-TSS (NR_108035)	promoter-TSS (NR_108035)	-140	NM_001010917	401647	Hs.567524	NM_001010917	HPRD:16579	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_29051	chr13	110874533	110874815	+	15.25502	NA	intron (NM_001845, intron 2 of 51)	intron (NM_001845, intron 2 of 51)	84822	NM_001845	1282	Hs.17441	NM_001845	HPRD:00359	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_77901	chr4	164271933	164272087	+	15.25502	NA	exon (NM_006174, exon 4 of 4)	exon (NM_006174, exon 4 of 4)	6919	NM_006174	4889	Hs.519058	NM_006174	HPRD:03591	NPY5R	NPY5-R|NPYR5|NPYY5-R	neuropeptide Y receptor Y5	protein-coding
19-PTNLD28-TUMOR_peak_57529	chr2	192491408	192491532	+	15.25502	NA	Intergenic	Intergenic	-51328	NM_001254736	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58863	chr2	232940702	232940837	+	15.25502	NA	intron (NR_046477, intron 5 of 18)	MIRb|SINE|MIR	114476	NR_046476	129563	Hs.732236	NM_152383	HPRD:14619	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_30406	chr14	55158408	55158542	+	15.25502	NA	intron (NM_001161576, intron 1 of 10)	intron (NM_001161576, intron 1 of 10)	-63031	NM_001161577	23034	Hs.98259	NM_015589	HPRD:10209	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_104124	chr9	84476717	84476840	+	15.25502	NA	Intergenic	Intergenic	-51574	NR_026851	347127	Hs.215235	NM_198509	ENSG00000240632	SPATA31D5P	FAM75D5|FAM75D5P	SPATA31 subfamily D, member 5, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99160	chr8	71446820	71446977	+	15.25502	NA	Intergenic	Intergenic	63529	NR_110653	101926892	Hs.367827	NR_110653	ENSG00000253967	LOC101926892	-	uncharacterized LOC101926892	ncRNA
19-PTNLD28-TUMOR_peak_30488	chr14	56958076	56958217	+	15.25502	NA	Intergenic	Intergenic	-88365	NM_017799	54916	Hs.497253	NM_017799	HPRD:12624	TMEM260	C14orf101	transmembrane protein 260	protein-coding
19-PTNLD28-TUMOR_peak_65664	chr22	41424904	41425134	+	15.25502	NA	Intergenic	ERVL-E-int|LTR|ERVL	-63498	NR_031694	100302237		NR_031694	miRBase:MI0006428	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
19-PTNLD28-TUMOR_peak_89753	chr6	142872697	142872894	+	15.25502	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	86178	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
19-PTNLD28-TUMOR_peak_81457	chr5	107229435	107229676	+	15.25502	NA	intron (NM_001163315, intron 7 of 8)	intron (NM_001163315, intron 7 of 8)	-222959	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_66602	chr3	11296707	11296878	+	15.25502	NA	intron (NM_000861, intron 2 of 2)	LTR10B1|LTR|ERV1	2407	NM_000861	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_77317	chr4	142023548	142023760	+	15.25502	NA	intron (NM_020724, intron 1 of 6)	intron (NM_020724, intron 1 of 6)	30962	NM_020724	57484	Hs.659104	NM_020724	HPRD:15258	RNF150	-	ring finger protein 150	protein-coding
19-PTNLD28-TUMOR_peak_109183	chrX	110498600	110498729	+	15.25502	NA	intron (NM_014289, intron 2 of 12)	intron (NM_014289, intron 2 of 12)	15110	NM_014289	827	Hs.496593	NM_014289	HPRD:02145	CAPN6	CANPX|CAPNX|CalpM|DJ914P14.1	calpain 6	protein-coding
19-PTNLD28-TUMOR_peak_53707	chr2	83575047	83575197	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	491195	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_110294	chrY	15296392	15296529	+	15.25502	NA	Intergenic	L1PA2|LINE|L1	279761	NM_004660	8653	Hs.99120	NM_004660	HPRD:02452	DDX3Y	DBY	DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_77244	chr4	141004494	141004628	+	15.25502	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	70672	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_431	chr1	7268032	7268213	+	15.25502	NA	intron (NM_015215, intron 4 of 22)	intron (NM_015215, intron 4 of 22)	422738	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_51800	chr2	28178001	28178214	+	15.25502	NA	intron (NM_199193, intron 4 of 13)	intron (NM_199193, intron 4 of 13)	-41127	NR_036230	100422965		NR_036230		MIR4263	-	microRNA 4263	ncRNA
19-PTNLD28-TUMOR_peak_10463	chr1	226120947	226121067	+	15.25502	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	8076	NM_001172425	7044	Hs.520187	NM_003240	HPRD:03526	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
19-PTNLD28-TUMOR_peak_82464	chr5	137958873	137958996	+	15.25502	NA	Intergenic	AluJb|SINE|Alu	-47616	NM_004134	3313	Hs.184233	NM_004134	HPRD:02770	HSPA9	CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74	heat shock 70kDa protein 9 (mortalin)	protein-coding
19-PTNLD28-TUMOR_peak_14272	chr10	73857524	73857707	+	15.25502	NA	intron (NM_001198800, intron 9 of 9)	intron (NM_001198800, intron 9 of 9)	-8825	NM_001134434	9806	Hs.523009	NM_014767	HPRD:12146	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
19-PTNLD28-TUMOR_peak_85914	chr6	22448716	22448899	+	15.25502	NA	Intergenic	Intergenic	-120871	NM_138574	154150	Hs.629246	NM_138574	HPRD:17935	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_87077	chr6	36282078	36282289	+	15.25502	NA	Intergenic	Intergenic	22479	NM_001010903	389384	Hs.162104	NM_001010903	HPRD:16824	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
19-PTNLD28-TUMOR_peak_54783	chr2	109648070	109648239	+	15.25502	NA	Intergenic	CpG	-42326	NM_022336	10913	Hs.171971	NM_022336	HPRD:04974	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
19-PTNLD28-TUMOR_peak_85257	chr6	10147322	10147455	+	15.25502	NA	Intergenic	L1M6|LINE|L1	-265163	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4518	chr1	82627412	82627564	+	15.25502	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	361406	NM_012302	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_105042	chr9	104095937	104096067	+	15.25502	NA	Intergenic	AluJr|SINE|Alu	49799	NM_001127610	570	Hs.284712	NM_001701	HPRD:08376	BAAT	BACAT|BAT	bile acid CoA:amino acid N-acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_9038	chr1	196712547	196712686	+	15.25502	NA	exon (NM_000186, exon 20 of 22)	exon (NM_000186, exon 20 of 22)	-31314	NM_021023	10878	Hs.709217	NM_021023	HPRD:05626	CFHR3	CFHL3|DOWN16|FHR-3|FHR3|HLF4	complement factor H-related 3	protein-coding
19-PTNLD28-TUMOR_peak_12982	chr10	37824892	37825106	+	15.25502	NA	Intergenic	Intergenic	66860	NM_001190489	100288485	Hs.727092	NM_001190489	ENSG00000256892	MTRNR2L7	HN7	MT-RNR2-like 7	protein-coding
19-PTNLD28-TUMOR_peak_16172	chr10	127300487	127300662	+	15.25502	NA	Intergenic	Intergenic	37634	NR_023362	100169752	Hs.652647	NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109020	chrX	102893692	102893877	+	15.25502	NA	Intergenic	Intergenic	9892	NM_001006639	9338	Hs.95243	NM_004780	HPRD:02211	TCEAL1	SIIR|WEX9|p21|pp21	transcription elongation factor A (SII)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_14810	chr10	90595439	90595643	+	15.25502	NA	intron (NM_144590, intron 1 of 5)	intron (NM_144590, intron 1 of 5)	16191	NM_144590	118932	Hs.217484	NM_144590		ANKRD22	-	ankyrin repeat domain 22	protein-coding
19-PTNLD28-TUMOR_peak_46159	chr18	64772055	64772206	+	15.25502	NA	Intergenic	Intergenic	23309	NR_049809	100847002		NR_049809	miRBase:MI0017879	MIR5011	-	microRNA 5011	ncRNA
19-PTNLD28-TUMOR_peak_17412	chr11	16533108	16533277	+	15.25502	NA	Intergenic	Intergenic	-35257	NM_033326	55553	Hs.368226	NM_017508	HPRD:06267	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
19-PTNLD28-TUMOR_peak_6429	chr1	146861772	146861917	+	15.25502	NA	intron (NR_038423, intron 3 of 3)	L1P4d|LINE|L1	127855	NR_038423	100289211	Hs.323484	NR_038423		LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
19-PTNLD28-TUMOR_peak_89660	chr6	138555628	138555789	+	15.25502	NA	intron (NM_020340, intron 5 of 33)	intron (NM_020340, intron 5 of 33)	-16081	NM_021635	59351	Hs.302016	NM_021635	HPRD:16137	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
19-PTNLD28-TUMOR_peak_88342	chr6	74350224	74350348	+	15.25502	NA	intron (NM_012434, intron 3 of 10)	MIRc|SINE|MIR	13451	NM_012434	26503	Hs.597422	NM_012434	HPRD:05058	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (acidic sugar transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_78050	chr4	172522360	172522555	+	15.25502	NA	Intergenic	Intergenic	-212118	NM_001034845	442117	Hs.386236	NM_001034845	ENSG00000174473	GALNTL6	GALNACT20|GALNT17|GalNAc-T6L	polypeptide N-acetylgalactosaminyltransferase-like 6	protein-coding
19-PTNLD28-TUMOR_peak_20694	chr11	95413838	95413963	+	15.25502	NA	Intergenic	MIR3|SINE|MIR	109054	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_92489	chr7	48339329	48339483	+	15.25502	NA	intron (NM_152701, intron 23 of 61)	intron (NM_152701, intron 23 of 61)	128349	NM_152701	154664	Hs.226568	NM_152701	HPRD:07422	ABCA13	-	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
19-PTNLD28-TUMOR_peak_61034	chr20	38234618	38234887	+	15.25502	NA	Intergenic	LTR16A|LTR|ERVL	-381361	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_76479	chr4	106132171	106132333	+	15.25502	NA	intron (NM_017628, intron 2 of 2)	L2a|LINE|L2	64410	NM_001127208	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_5074	chr1	96522738	96522850	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	316887	NR_110693	101928241	Hs.514137	NR_110693	ENSG00000231987	LOC101928241	-	uncharacterized LOC101928241	ncRNA
19-PTNLD28-TUMOR_peak_30621	chr14	60952609	60952893	+	15.25502	NA	promoter-TSS (NM_174978)	promoter-TSS (NM_174978)	13	NM_174978	317761	Hs.335754	NM_174978	HPRD:08504	C14orf39	Six6os1	chromosome 14 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_60169	chr20	22672438	22672688	+	15.25502	NA	Intergenic	Intergenic	-84408	NR_109883	101929685	Hs.563018	NR_109883		LINC01384	-	long intergenic non-protein coding RNA 1384	ncRNA
19-PTNLD28-TUMOR_peak_93030	chr7	68828208	68828458	+	15.25502	NA	Intergenic	L1PB2|LINE|L1	234148	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_38489	chr16	69451611	69451881	+	15.25502	NA	Intergenic	Intergenic	-6752	NM_030579	80777	Hs.461131	NM_030579	HPRD:13106	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
19-PTNLD28-TUMOR_peak_29820	chr14	34318490	34318656	+	15.25502	NA	Intergenic	Intergenic	101711	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_77772	chr4	156708340	156708503	+	15.25502	NA	intron (NM_001291951, intron 5 of 14)	intron (NM_001291951, intron 5 of 14)	28296	NM_001291954	2983	Hs.77890	NM_000857	HPRD:00769	GUCY1B3	GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B1	guanylate cyclase 1, soluble, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_11905	chr10	7195806	7195916	+	15.25502	NA	Intergenic	Intergenic	255442	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_27748	chr13	32539937	32540171	+	15.25502	NA	Intergenic	Intergenic	-65383	NM_023037	10129	Hs.507669	NM_023037	HPRD:10821	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	furry homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78953	chr5	12250644	12250847	+	15.25502	NA	Intergenic	MER77|LTR|ERVL	-324224	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_24892	chr12	61431694	61431882	+	15.25502	NA	Intergenic	Intergenic	1154832	NM_178539	338811	Hs.269745	NM_178539	HPRD:16876	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	protein-coding
19-PTNLD28-TUMOR_peak_28119	chr13	46233113	46233303	+	15.25502	NA	Intergenic	Intergenic	42111	NR_125786	103752581		NR_125786		LINC01055	-	long intergenic non-protein coding RNA 1055	ncRNA
19-PTNLD28-TUMOR_peak_80223	chr5	62182897	62183107	+	15.25502	NA	Intergenic	Intergenic	308440	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_44462	chr18	8730485	8730678	+	15.25502	NA	intron (NM_015210, intron 4 of 16)	intron (NM_015210, intron 4 of 16)	13212	NM_015210	23255	Hs.707920	NM_015210	HPRD:11110	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_109369	chrX	123197947	123198157	+	15.25502	NA	intron (NM_001042751, intron 20 of 33)	intron (NM_001042751, intron 20 of 33)	102496	NM_006603	10735	Hs.496710	NM_006603	HPRD:05077	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_108240	chrX	48562452	48562708	+	15.25502	NA	intron (NM_001282166, intron 3 of 5)	intron (NM_001282166, intron 3 of 5)	7456	NM_003173	6839	Hs.522639	NM_003173	HPRD:02221	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_109240	chrX	115364166	115364315	+	15.25502	NA	Intergenic	Intergenic	62282	NM_000686	186	Hs.405348	NM_000686	HPRD:02071	AGTR2	AT2|ATGR2|MRX88	angiotensin II receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_110311	chrY	25562244	25562400	+	15.25502	NA	Intergenic	Intergenic	196718	NM_001005786	57055	Hs.592257	NM_020363	HPRD:11848	DAZ2	pDP1678	deleted in azoospermia 2	protein-coding
19-PTNLD28-TUMOR_peak_88475	chr6	80404737	80404885	+	15.25502	NA	intron (NM_031469, intron 2 of 3)	L2c|LINE|L2	-46825	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro-associated Y4	ncRNA
19-PTNLD28-TUMOR_peak_26583	chr12	118620125	118620383	+	15.25502	NA	intron (NM_016281, intron 14 of 20)	MER20|DNA|hAT-Charlie	46384	NM_002567	5037	Hs.433863	NM_002567	HPRD:06850	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_88366	chr6	75119316	75119449	+	15.25502	NA	intron (NR_110856, intron 2 of 3)	intron (NR_110856, intron 2 of 3)	340215	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_31857	chr14	95334377	95334531	+	15.25502	NA	Intergenic	Intergenic	-97955	NM_173849	145258	Hs.440438	NM_173849	HPRD:15928	GSC	SAMS	goosecoid homeobox	protein-coding
19-PTNLD28-TUMOR_peak_16094	chr10	125629906	125630155	+	15.25502	NA	intron (NM_198148, intron 2 of 13)	intron (NM_198148, intron 2 of 13)	21470	NM_198148	119587	Hs.656887	NM_198148	HPRD:08517	CPXM2	CPX2|UNQ676	carboxypeptidase X (M14 family), member 2	protein-coding
19-PTNLD28-TUMOR_peak_82021	chr5	129188575	129188698	+	15.25502	NA	Intergenic	Intergenic	-51887	NM_175856	337876	Hs.213137	NM_175856	HPRD:16766	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_104784	chr9	98663904	98664067	+	15.25502	NA	intron (NM_020207, intron 3 of 18)	intron (NM_020207, intron 3 of 18)	-25726	NR_023390	100128782	Hs.494549	NR_023389	ENSG00000175611	LINC00476	C9orf130|NAG11	long intergenic non-protein coding RNA 476	ncRNA
19-PTNLD28-TUMOR_peak_93727	chr7	83631791	83631942	+	15.25502	NA	intron (NM_006080, intron 11 of 16)	intron (NM_006080, intron 11 of 16)	192351	NM_006080	10371	Hs.252451	NM_006080		SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
19-PTNLD28-TUMOR_peak_79560	chr5	38193296	38193442	+	15.25502	NA	Intergenic	Intergenic	-65142	NM_001205301	133584	Hs.20103	NM_152403	HPRD:13433	EGFLAM	AGRINL|AGRNL|PIKA	EGF-like, fibronectin type III and laminin G domains	protein-coding
19-PTNLD28-TUMOR_peak_23274	chr12	16482665	16482815	+	15.25502	NA	Intergenic	Intergenic	-17336	NM_145792	4257	Hs.389700	NM_020300	HPRD:00705	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding
19-PTNLD28-TUMOR_peak_107820	chrX	23907740	23907927	+	15.25502	NA	intron (NM_024122, intron 1 of 8)	AluY|SINE|Alu	18224	NR_026545	79135	Hs.495851	NM_024122	HPRD:06657	APOO	FAM121B	apolipoprotein O	protein-coding
19-PTNLD28-TUMOR_peak_27603	chr13	28755606	28755839	+	15.25502	NA	intron (NM_175854, intron 4 of 18)	intron (NM_175854, intron 4 of 18)	-42411	NR_029383	100288730	Hs.123191	NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33654	chr15	55996118	55996499	+	15.25502	NA	intron (NM_173814, intron 2 of 19)	intron (NM_173814, intron 2 of 19)	38869	NM_173814	283659	Hs.130957	NM_173814	HPRD:18765	PRTG	IGDCC5	protogenin	protein-coding
19-PTNLD28-TUMOR_peak_33868	chr15	62637273	62637405	+	15.25502	NA	Intergenic	Intergenic	2111	NR_106733	102464834		NR_106733		MIR6085	hsa-mir-6085	microRNA 6085	ncRNA
19-PTNLD28-TUMOR_peak_44228	chr18	864924	865079	+	15.25502	NA	Intergenic	Intergenic	-39943	NM_001099733	116	Hs.531719	NM_001117	HPRD:02369	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
19-PTNLD28-TUMOR_peak_45130	chr18	29929841	29929994	+	15.25502	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	120530	NM_022751	64762	Hs.444314	NM_022751	HPRD:12685	GAREM	C18orf11|FAM59A|Gm944	GRB2 associated, regulator of MAPK1	protein-coding
19-PTNLD28-TUMOR_peak_23347	chr12	20618972	20619178	+	15.25502	NA	intron (NM_000921, intron 1 of 15)	intron (NM_000921, intron 1 of 15)	96896	NM_000921	5139	Hs.386791	NM_000921	HPRD:00441	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
19-PTNLD28-TUMOR_peak_80143	chr5	60106594	60106763	+	15.25502	NA	intron (NM_001297618, intron 1 of 8)	intron (NM_001297618, intron 1 of 8)	33423	NM_024930	79993	Hs.274256	NM_024930	HPRD:18700	ELOVL7	-	ELOVL fatty acid elongase 7	protein-coding
19-PTNLD28-TUMOR_peak_11143	chr1	236397323	236397450	+	15.25502	NA	intron (NM_019891, intron 8 of 15)	intron (NM_019891, intron 8 of 15)	47953	NM_019891	56605	Hs.558519	NM_019891	HPRD:13279	ERO1LB	-	ERO1-like beta (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_29800	chr14	33776970	33777185	+	15.25502	NA	intron (NM_173159, intron 3 of 11)	intron (NM_173159, intron 3 of 11)	368618	NM_173159	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_14419	chr10	77400683	77400843	+	15.25502	NA	Intergenic	Intergenic	-141756	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_47405	chr19	12335640	12335830	+	15.25502	NA	Intergenic	LTR19A|LTR|ERV1	29905	NR_104179	100289333	Hs.662603	NR_104179		LOC100289333	-	uncharacterized LOC100289333	ncRNA
19-PTNLD28-TUMOR_peak_56110	chr2	143577068	143577299	+	15.25502	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-58012	NM_003937	8942	Hs.470126	NM_003937	HPRD:08940	KYNU	-	kynureninase	protein-coding
19-PTNLD28-TUMOR_peak_62947	chr21	26088713	26088892	+	15.25502	NA	Intergenic	Intergenic	-124062	NR_046198	339622	Hs.616316	NR_046198	ENSG00000226983	LOC339622	-	uncharacterized LOC339622	ncRNA
19-PTNLD28-TUMOR_peak_85764	chr6	18534143	18534319	+	15.25502	NA	Intergenic	Intergenic	-37784	NR_030312	693125		NR_030312	miRBase:MI0003593	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
19-PTNLD28-TUMOR_peak_35333	chr15	93779414	93779709	+	15.25502	NA	Intergenic	Intergenic	-147118	NM_020211	56963	Hs.271277	NM_020211	HPRD:09560	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
19-PTNLD28-TUMOR_peak_44263	chr18	2168194	2168343	+	15.25502	NA	Intergenic	MER39B|LTR|ERV1	403221	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_83018	chr5	146883605	146883810	+	15.25502	NA	intron (NM_001197294, intron 1 of 13)	intron (NM_001197294, intron 1 of 13)	5912	NM_001197294	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_25784	chr12	99994307	99994441	+	15.25502	NA	intron (NM_152788, intron 9 of 25)	intron (NM_152788, intron 9 of 25)	-47154	NM_153364	196472	Hs.591011	NM_153364	HPRD:17539	FAM71C	-	family with sequence similarity 71, member C	protein-coding
19-PTNLD28-TUMOR_peak_110127	chrY	3903913	3904173	+	15.25502	NA	Intergenic	LTR4|LTR|ERV1	456917	NM_139214	90655	Hs.112148	NM_139214	HPRD:18512	TGIF2LY	TGIFLY	TGFB-induced factor homeobox 2-like, Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_35058	chr15	86565205	86565417	+	15.25502	NA	Intergenic	Intergenic	94637	NR_120368	101929701	Hs.132570	NR_120368		LOC101929701	-	uncharacterized LOC101929701	ncRNA
19-PTNLD28-TUMOR_peak_9909	chr1	210484603	210484772	+	15.25502	NA	Intergenic	Intergenic	-16909	NM_001170564	55733	Hs.58650	NM_018194	HPRD:12041	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_34352	chr15	71969200	71969385	+	15.25502	NA	intron (NM_001286429, intron 2 of 11)	L1MB4|LINE|L1	14586	NR_120346	101929173	Hs.680593	NR_120346		LOC101929173	-	uncharacterized LOC101929173	ncRNA
19-PTNLD28-TUMOR_peak_59626	chr20	4446910	4447085	+	15.25502	NA	Intergenic	Intergenic	-217338	NM_000678	146	Hs.557	NM_000678	HPRD:00079	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
19-PTNLD28-TUMOR_peak_56497	chr2	158971773	158972034	+	15.25502	NA	intron (NM_173355, intron 3 of 6)	intron (NM_173355, intron 3 of 6)	13521	NM_173355	151531	Hs.128427	NM_173355	HPRD:15627	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
19-PTNLD28-TUMOR_peak_88865	chr6	99643955	99644124	+	15.25502	NA	Intergenic	Intergenic	153492	NM_032511	84553	Hs.573245	NM_032511	HPRD:12866	FAXC	C6orf168|dJ273F20	failed axon connections homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_73370	chr3	194193156	194193317	+	15.25502	NA	Intergenic	Intergenic	-4268	NM_024524	79572	Hs.529609	NM_024524	HPRD:10636	ATP13A3	AFURS1	ATPase type 13A3	protein-coding
19-PTNLD28-TUMOR_peak_107761	chrX	20820271	20820442	+	15.25502	NA	Intergenic	LTR16C|LTR|ERVL	-535606	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_81083	chr5	89031059	89031197	+	15.25502	NA	Intergenic	Intergenic	281409	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_40244	chr17	13250916	13251077	+	15.25502	NA	Intergenic	LTR10F|LTR|ERV1	254248	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_9961	chr1	212261909	212262135	+	15.25502	NA	intron (NM_001286229, intron 11 of 12)	L2c|LINE|L2	11067	NR_036068	100422947		NR_036068		MIR3122	-	microRNA 3122	ncRNA
19-PTNLD28-TUMOR_peak_109511	chrX	132860270	132860644	+	15.25502	NA	intron (NM_001164617, intron 3 of 8)	intron (NM_001164617, intron 3 of 8)	259216	NM_001164617	2719	Hs.644108	NM_004484	HPRD:02074	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
19-PTNLD28-TUMOR_peak_42395	chr17	53603829	53603969	+	15.25502	NA	Intergenic	MIR|SINE|MIR	-104558	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_59784	chr20	10501868	10502001	+	15.25502	NA	intron (NM_001009608, intron 2 of 7)	HAL1|LINE|L1	85983	NM_001009608	128710	Hs.668782	NM_001009608	HPRD:12516	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_67123	chr3	23083923	23084129	+	15.25502	NA	Intergenic	Intergenic	-160758	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_25553	chr12	90699302	90699450	+	15.25502	NA	Intergenic	Intergenic	596644	NR_028138	338758	Hs.601766	NR_028138	ENSG00000271614	LINC00936	-	long intergenic non-protein coding RNA 936	ncRNA
19-PTNLD28-TUMOR_peak_4436	chr1	77813428	77813582	+	15.25502	NA	intron (NM_012093, intron 6 of 13)	intron (NM_012093, intron 6 of 13)	65218	NM_012093	26289	Hs.559718	NM_012093	HPRD:10472	AK5	AK6	adenylate kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_89858	chr6	147769517	147769682	+	15.25502	NA	Intergenic	LTR9B|LTR|ERV1	-60229	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_52911	chr2	58398762	58398867	+	15.25502	NA	intron (NM_018062, intron 7 of 13)	L1PA3|LINE|L1	69701	NM_001114636	55120	Hs.631890	NM_018062	HPRD:06997	FANCL	FAAP43|PHF9|POG	Fanconi anemia, complementation group L	protein-coding
19-PTNLD28-TUMOR_peak_23214	chr12	14547451	14547607	+	15.25502	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	9531	NM_181352	55729	Hs.504856	NM_018179	HPRD:09811	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_18410	chr11	46559524	46559642	+	15.25502	NA	intron (NM_001267782, intron 8 of 19)	intron (NM_001267782, intron 8 of 19)	53331	NM_017749	55626	Hs.654644	NM_017749	HPRD:10975	AMBRA1	DCAF3|WDR94	autophagy/beclin-1 regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_97059	chr8	8492894	8493083	+	15.25502	NA	Intergenic	Intergenic	-66678	NM_194284	137075	Hs.183617	NM_194284	HPRD:13069	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
19-PTNLD28-TUMOR_peak_50881	chr2	7100878	7101069	+	15.25502	NA	intron (NM_014746, intron 2 of 8)	intron (NM_014746, intron 2 of 8)	-42160	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80126	chr5	59628563	59628700	+	15.25502	NA	intron (NM_001165899, intron 1 of 16)	intron (NM_001165899, intron 1 of 16)	-154909	NR_024617	25859	Hs.146312	NM_001039499	HPRD:09230	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_29854	chr14	34739654	34739878	+	15.25502	NA	Intergenic	Intergenic	191702	NM_138288	171546	Hs.740577	NM_138288	HPRD:16610	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase, small subunit A	protein-coding
19-PTNLD28-TUMOR_peak_82389	chr5	136522929	136523069	+	15.25502	NA	intron (NM_004598, intron 3 of 10)	intron (NM_004598, intron 3 of 10)	312019	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_80782	chr5	75727503	75727652	+	15.25502	NA	intron (NM_006633, intron 1 of 35)	AluSc|SINE|Alu	28497	NM_006633	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_100175	chr8	116765450	116765627	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	-84283	NM_014112	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_89454	chr6	130838593	130838771	+	15.25502	NA	Intergenic	Intergenic	80420	NM_052913	114801	Hs.591341	NM_052913	HPRD:13901	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
19-PTNLD28-TUMOR_peak_60317	chr20	25379835	25380073	+	15.25502	NA	Intergenic	HERVK3-int|LTR|ERVK	-8336	NM_001042472	26090	Hs.441550	NM_015600	HPRD:07094	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2	abhydrolase domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_8352	chr1	175638835	175639012	+	15.25502	NA	intron (NM_003285, intron 1 of 22)	intron (NM_003285, intron 1 of 22)	73829	NM_003285	7143	Hs.659864	NM_003285	HPRD:03589	TNR	TN-R	tenascin R	protein-coding
19-PTNLD28-TUMOR_peak_31960	chr14	98587306	98587441	+	15.25502	NA	Intergenic	Intergenic	-142912	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	ncRNA
19-PTNLD28-TUMOR_peak_16066	chr10	124621267	124621419	+	15.25502	NA	intron (NR_037911, intron 1 of 2)	L2a|LINE|L2	-15652	NM_022034	50624	Hs.647182	NM_022034	HPRD:06476	CUZD1	ERG-1|UO-44	CUB and zona pellucida-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_14809	chr10	90467535	90467675	+	15.25502	NA	Intergenic	Intergenic	-16696	NM_001080518	643414	Hs.632092	NM_001080518	ENSG00000204021	LIPK	LIPL2|bA186O14.2	lipase, family member K	protein-coding
19-PTNLD28-TUMOR_peak_51340	chr2	17096634	17096900	+	15.25502	NA	Intergenic	HERVL-int|LTR|ERVL	-249633	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_8885	chr1	185819618	185819776	+	15.25502	NA	intron (NM_031935, intron 2 of 106)	intron (NM_031935, intron 2 of 106)	116014	NM_031935	83872	Hs.58877	NM_031935	HPRD:06509	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
19-PTNLD28-TUMOR_peak_27690	chr13	31019841	31020140	+	15.25502	NA	Intergenic	CpG	20091	NM_002128	3146	Hs.434102	NM_002128	HPRD:01228	HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
19-PTNLD28-TUMOR_peak_97981	chr8	29545522	29545672	+	15.25502	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	60028	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_18526	chr11	48151362	48151518	+	15.25502	NA	intron (NM_002843, intron 7 of 24)	MLT1J|LTR|ERVL-MaLR	-86922	NM_001005470	119765	Hs.553566	NM_001005470	HPRD:14960	OR4B1	OR11-106|OST208	olfactory receptor, family 4, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_12140	chr10	14541021	14541176	+	15.25502	NA	Intergenic	Intergenic	62523	NR_031668	100302116		NR_031668	miRBase:MI0006401	MIR1265	MIRN1265|hsa-mir-1265	microRNA 1265	ncRNA
19-PTNLD28-TUMOR_peak_12296	chr10	21055913	21056085	+	15.25502	NA	Intergenic	L3|LINE|CR1	130532	NM_006393	10529	Hs.5025	NM_006393	HPRD:10403	NEBL	LASP2|LNEBL	nebulette	protein-coding
19-PTNLD28-TUMOR_peak_17323	chr11	13461726	13461879	+	15.25502	NA	promoter-TSS (NM_001297742)	promoter-TSS (NM_001297742)	24	NM_001297742	84280	Hs.332382	NM_032320	HPRD:17045	BTBD10	GMRP-1|GMRP1	BTB (POZ) domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_39008	chr16	81995545	81995760	+	15.25502	NA	3' UTR (NM_002661, exon 33 of 33)	3' UTR (NM_002661, exon 33 of 33)	49441	NM_145168	93517	Hs.87779	NM_145168	HPRD:17118	SDR42E1	-	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
19-PTNLD28-TUMOR_peak_57754	chr2	201491926	201492116	+	15.25502	NA	intron (NM_001159, intron 19 of 34)	intron (NM_001159, intron 19 of 34)	41290	NM_001159	316	Hs.406238	NM_001159	HPRD:07537	AOX1	AO|AOH1	aldehyde oxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_57637	chr2	197836753	197836914	+	15.25502	NA	Intergenic	MER115|DNA|hAT-Tip100	-45379	NM_024989	80055	Hs.229988	NM_024989	HPRD:10147	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_98377	chr8	40997426	40997562	+	15.25502	NA	Intergenic	Intergenic	169496	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59823	chr20	11382626	11382765	+	15.25502	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-128664	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_4431	chr1	77592034	77592168	+	15.25502	NA	intron (NM_005482, intron 9 of 10)	L1MC4|LINE|L1	66273	NR_106978	102466995		NR_106978		MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
19-PTNLD28-TUMOR_peak_35332	chr15	93716754	93716923	+	15.25502	NA	Intergenic	Intergenic	-84395	NM_020211	56963	Hs.271277	NM_020211	HPRD:09560	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
19-PTNLD28-TUMOR_peak_98766	chr8	54331408	54331649	+	15.25502	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-167271	NM_001282904	4986	Hs.106795	NM_000912	HPRD:01309	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor, kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_80228	chr5	62558125	62558257	+	15.25502	NA	Intergenic	L1ME1|LINE|L1	683629	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_14378	chr10	76684136	76684293	+	15.25502	NA	intron (NM_001256469, intron 3 of 17)	intron (NM_001256469, intron 3 of 17)	98043	NM_012330	23522	Hs.35758	NM_012330	HPRD:07065	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
19-PTNLD28-TUMOR_peak_74770	chr4	24268613	24268853	+	15.25502	NA	Intergenic	Intergenic	253180	NR_030299	693158		NR_030299	miRBase:MI0003580	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
19-PTNLD28-TUMOR_peak_24820	chr12	58299260	58299386	+	15.25502	NA	Intergenic	Intergenic	30624	NR_038269	100506844	Hs.90286	NR_038269		LOC100506844	-	uncharacterized LOC100506844	ncRNA
19-PTNLD28-TUMOR_peak_74079	chr4	4557749	4557874	+	15.25502	NA	intron (NR_037888, intron 2 of 5)	intron (NR_037888, intron 2 of 5)	13953	NR_037888	100507266	Hs.276795	NR_037888	ENSG00000247708	STX18-AS1	-	STX18 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_77019	chr4	128918750	128918926	+	15.25502	NA	intron (NM_001039717, intron 4 of 10)	intron (NM_001039717, intron 4 of 10)	-31699	NM_152778	256471	Hs.480701	NM_152778	HPRD:14557	MFSD8	CLN7	major facilitator superfamily domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_59393	chr20	531396	531571	+	15.25502	NA	Intergenic	L2a|LINE|L2	-7001	NM_001895	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_96577	chr7	154229928	154230171	+	15.25502	NA	intron (NM_001290252, intron 3 of 23)	MER39|LTR|ERV1	227752	NM_001290252	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_4491	chr1	80176872	80177005	+	15.25502	NA	Intergenic	MLT1C-int|LTR|ERVL-MaLR	-704443	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	EGF, latrophilin and seven transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81812	chr5	122545409	122545581	+	15.25502	NA	Intergenic	Intergenic	120654	NM_001136239	93166	Hs.135118	NM_001136239	ENSG00000061455	PRDM6	-	PR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_53635	chr2	76156630	76156765	+	15.25502	NA	Intergenic	AluYa5|SINE|Alu	-218586	NM_001201335	6936	Hs.303808	NM_003203	HPRD:01791	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_54586	chr2	102637158	102637370	+	15.25502	NA	intron (NR_048564, intron 5 of 8)	intron (NR_048564, intron 5 of 8)	21840	NR_048564	7850	Hs.25333	NM_004633	HPRD:00995	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor, type II	protein-coding
19-PTNLD28-TUMOR_peak_45095	chr18	28881217	28881417	+	15.25502	NA	Intergenic	Intergenic	-16735	NM_001942	1828	Hs.2633	NM_001942	HPRD:00515	DSG1	CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1	desmoglein 1	protein-coding
19-PTNLD28-TUMOR_peak_109702	chrX	148415961	148416107	+	15.25502	NA	Intergenic	L1PA3|LINE|L1	170850	NM_000202	3423	Hs.460960	NM_000202	HPRD:02402	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_42895	chr17	62645347	62645554	+	15.25502	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	12936	NM_022739	64750	Hs.515011	NM_022739		SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_67333	chr3	30140150	30140286	+	15.25502	NA	Intergenic	Intergenic	-164571	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31709	chr14	92199440	92199719	+	15.25502	NA	Intergenic	Intergenic	-1166	NM_024764	79820	Hs.131755	NM_024764	HPRD:16613	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_3711	chr1	55939944	55940113	+	15.25502	NA	Intergenic	Intergenic	248714	NR_039618	100616272		NR_039618	miRBase:MI0016759	MIR4422	-	microRNA 4422	ncRNA
19-PTNLD28-TUMOR_peak_34947	chr15	84711616	84711763	+	15.25502	NA	Intergenic	L1P1|LINE|L1	-37250	NR_036652	648809	Hs.585157	NR_036652		EFTUD1P1	FAM42B|HsT19321	elongation factor Tu GTP binding domain containing 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_29949	chr14	37039379	37039534	+	15.25502	NA	Intergenic	Intergenic	12330	NM_014360	26257	Hs.234763	NM_014360		NKX2-8	NKX2.8|NKX2H|Nkx2-9	NK2 homeobox 8	protein-coding
19-PTNLD28-TUMOR_peak_109850	chrX	152419641	152419809	+	15.25502	NA	Intergenic	Intergenic	66391	NM_004988	4100	Hs.72879	NM_004988	HPRD:02059	MAGEA1	CT1.1|MAGE1	melanoma antigen family A, 1 (directs expression of antigen MZ2-E)	protein-coding
19-PTNLD28-TUMOR_peak_99331	chr8	81806063	81806313	+	15.25502	NA	Intergenic	CpG	-19172	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
19-PTNLD28-TUMOR_peak_62965	chr21	26934421	26934587	+	15.25502	NA	promoter-TSS (NR_001458)	promoter-TSS (NR_001458)	47	NR_001458	114614	Hs.697120	NR_001458	ENSG00000234883	MIR155HG	BIC|MIRHG2|NCRNA00172	MIR155 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_98003	chr8	29917369	29917474	+	15.25502	NA	Intergenic	ERVL-B4-int|LTR|ERVL	23303	NM_016127	51669	Hs.521487	NM_016127	HPRD:08651	SARAF	FOAP-7|TMEM66|XTP3	store-operated calcium entry-associated regulatory factor	protein-coding
19-PTNLD28-TUMOR_peak_45836	chr18	52901993	52902153	+	15.25502	NA	intron (NM_001243236, intron 8 of 12)	intron (NM_001243236, intron 8 of 12)	67779	NM_001243236	6925	Hs.605153	NM_003199	HPRD:03780	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_69216	chr3	81784066	81784233	+	15.25502	NA	intron (NM_000158, intron 1 of 15)	Tigger7|DNA|TcMar-Tigger	26801	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_55847	chr2	133737998	133738184	+	15.25502	NA	intron (NM_207481, intron 7 of 17)	MIRc|SINE|MIR	-285676	NR_110294	101928161	Hs.661917	NR_110294	ENSG00000226953	LOC101928161	-	uncharacterized LOC101928161	ncRNA
19-PTNLD28-TUMOR_peak_88181	chr6	64226192	64226525	+	15.25502	NA	Intergenic	Intergenic	-55559	NM_003463	7803	Hs.227777	NM_003463	HPRD:03349	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
19-PTNLD28-TUMOR_peak_4562	chr1	84813925	84814237	+	15.25502	NA	intron (NM_001010971, intron 3 of 3)	intron (NM_001010971, intron 3 of 3)	45747	NM_001134664	148418	Hs.591445	NM_001010971	HPRD:17302	SAMD13	-	sterile alpha motif domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_87248	chr6	38025851	38026101	+	15.25502	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	238669	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_79858	chr5	53309499	53309667	+	15.25502	NA	intron (NM_019087, intron 4 of 4)	LTR8A|LTR|ERV1	-62154	NR_030307	693166		NR_030307		MIR581	MIRN581|hsa-mir-581	microRNA 581	ncRNA
19-PTNLD28-TUMOR_peak_28482	chr13	75504655	75504799	+	15.25502	NA	Intergenic	Intergenic	309790	NR_027466	647288	Hs.567920	NR_027466	ENSG00000214249	CTAGE11P	-	CTAGE family, member 11, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89645	chr6	138172918	138173069	+	15.25502	NA	intron (NR_049793, intron 3 of 3)	intron (NR_049793, intron 3 of 3)	-15332	NM_001270508	7128	Hs.211600	NM_006290	HPRD:01857	TNFAIP3	A20|OTUD7C|TNFA1P2	tumor necrosis factor, alpha-induced protein 3	protein-coding
19-PTNLD28-TUMOR_peak_27127	chr12	128259419	128259644	+	15.25502	NA	Intergenic	Intergenic	-106631	NR_033987	400087	Hs.524846	NR_033987		FLJ37505	-	uncharacterized LOC400087	ncRNA
19-PTNLD28-TUMOR_peak_105356	chr9	112794174	112794320	+	15.25502	NA	intron (NM_007203, intron 7 of 10)	intron (NM_007203, intron 7 of 10)	-16631	NM_001004065	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|PRKA2	A kinase (PRKA) anchor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_33662	chr15	56320726	56320967	+	15.25502	NA	Intergenic	Intergenic	-34902	NM_006154	4734	Hs.1565	NM_006154	HPRD:03786	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_88991	chr6	107945839	107946018	+	15.25502	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	107672	NM_001286409	256380	Hs.486109	NM_198081		SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_79802	chr5	50023011	50023175	+	15.25502	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	60321	NM_001178056	79668	Hs.369581	NM_024615	HPRD:07960	PARP8	ARTD16|pART16	poly (ADP-ribose) polymerase family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_105083	chr9	106127121	106127333	+	15.25502	NA	Intergenic	Intergenic	-39912	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
19-PTNLD28-TUMOR_peak_100141	chr8	113922104	113922254	+	15.25502	NA	intron (NM_198124, intron 11 of 71)	intron (NM_198124, intron 11 of 71)	266457	NR_031745	100302225		NR_031745	miRBase:MI0010487	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA
19-PTNLD28-TUMOR_peak_97048	chr8	8345083	8345285	+	15.25502	NA	Intergenic	L1MDa|LINE|L1	-105840	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_85246	chr6	9540914	9541072	+	15.25502	NA	Intergenic	Intergenic	-871558	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52156	chr2	37788855	37789050	+	15.25502	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	110390	NM_006449	10602	Hs.369574	NM_006449	HPRD:09364	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
19-PTNLD28-TUMOR_peak_11913	chr10	7353274	7353569	+	15.25502	NA	intron (NM_001018039, intron 4 of 20)	intron (NM_001018039, intron 4 of 20)	97882	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_108840	chrX	80457243	80457610	+	15.25502	NA	promoter-TSS (NM_030763)	promoter-TSS (NM_030763)	15	NM_030763	79366	Hs.282204	NM_030763	HPRD:02310	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_28320	chr13	52936715	52936868	+	15.25502	NA	Intergenic	Intergenic	28361	NR_120400	103191607		NR_120400		LOC103191607	-	uncharacterized LOC103191607	ncRNA
19-PTNLD28-TUMOR_peak_37934	chr16	55657117	55657433	+	15.25502	NA	Intergenic	Intergenic	-32267	NM_001172501	6530	Hs.78036	NM_001043	HPRD:01232	SLC6A2	NAT1|NET|NET1|SLC6A5	solute carrier family 6 (neurotransmitter transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_23278	chr12	16535928	16536187	+	15.25502	NA	Intergenic	L1PA4|LINE|L1	29706	NM_145764	4257	Hs.389700	NM_020300	HPRD:00705	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding
19-PTNLD28-TUMOR_peak_81280	chr5	96736295	96736622	+	15.25502	NA	Intergenic	LTR48|LTR|ERV1	-103942	NR_105028	102546227	Hs.582516	NR_105028		LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA
19-PTNLD28-TUMOR_peak_7607	chr1	160386245	160386569	+	15.25376	NA	intron (NM_020335, intron 3 of 7)	intron (NM_020335, intron 3 of 7)	16043	NM_020335	57216	Hs.99477	NM_020335	HPRD:02758	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
19-PTNLD28-TUMOR_peak_102356	chr9	18890391	18890645	+	15.25376	NA	intron (NM_001040272, intron 25 of 28)	intron (NM_001040272, intron 25 of 28)	142738	NM_001287050	158297	Hs.731593	NM_153707	HPRD:16676	FAM154A	C9orf138	family with sequence similarity 154, member A	protein-coding
19-PTNLD28-TUMOR_peak_56586	chr2	160817089	160817265	+	15.25376	NA	intron (NM_001007267, intron 20 of 26)	intron (NM_001007267, intron 20 of 26)	-55910	NM_001198759	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_32682	chr15	27470080	27470280	+	15.25376	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-63714	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	LOC101928869	-	uncharacterized LOC101928869	ncRNA
19-PTNLD28-TUMOR_peak_58161	chr2	210892943	210893172	+	15.25376	NA	intron (NM_152519, intron 11 of 14)	intron (NM_152519, intron 11 of 14)	-1589	NR_110291	101928020	Hs.635556	NR_110291	ENSG00000229127	LOC101928020	-	uncharacterized LOC101928020	ncRNA
19-PTNLD28-TUMOR_peak_109542	chrX	134082805	134083184	+	15.25376	NA	Intergenic	MER49|LTR|ERV1	-33697	NM_019556	56180	Hs.590789	NM_019556	HPRD:06483	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_66904	chr3	15410100	15410415	+	15.25376	NA	Intergenic	Intergenic	-27356	NM_001018009	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_87504	chr6	42372317	42372436	+	15.25376	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	47413	NM_001297573	55809	Hs.485392	NM_018415	HPRD:11647	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_74771	chr4	24331877	24332131	+	15.25376	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	189909	NR_030299	693158		NR_030299	miRBase:MI0003580	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
19-PTNLD28-TUMOR_peak_36717	chr16	21087958	21088212	+	15.25376	NA	intron (NM_017539, intron 20 of 61)	LTR54B|LTR|ERV1	-81827	NM_020422	57146	Hs.258212	NM_020422	HPRD:17428	TMEM159	PROMETHIN	transmembrane protein 159	protein-coding
19-PTNLD28-TUMOR_peak_34860	chr15	82890041	82890267	+	15.25376	NA	intron (NR_045529, intron 2 of 23).2	intron (NR_045529, intron 2 of 23).2	7208	NR_045529	390660	Hs.640255	NR_045529	ENSG00000259785	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_411	chr1	6812354	6812695	+	15.25376	NA	Intergenic	LTR71A|LTR|ERV1	24937	NR_104621	100505887	Hs.250839	NR_104620	ENSG00000228750	LOC100505887	-	uncharacterized LOC100505887	ncRNA
19-PTNLD28-TUMOR_peak_105588	chr9	117107083	117107286	+	15.25159	NA	intron (NM_030767, intron 18 of 21)	intron (NM_030767, intron 18 of 21)	15115	NM_000608	5005	Hs.719954	NM_000608	HPRD:00725	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
19-PTNLD28-TUMOR_peak_91511	chr7	20825017	20825182	+	15.24934	NA	exon (NM_182700, exon 2 of 2)	exon (NM_182700, exon 2 of 2)	1409	NM_198956	221833	Hs.195922	NM_182700		SP8	BTD	Sp8 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_99731	chr8	101539932	101540087	+	15.24934	NA	intron (NM_198401, intron 5 of 5)	AluJo|SINE|Alu	31930	NM_001270378	157567	Hs.530199	NM_198401	HPRD:14103	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
19-PTNLD28-TUMOR_peak_105901	chr9	124419493	124419792	+	15.24934	NA	intron (NM_032552, intron 1 of 16)	intron (NM_032552, intron 1 of 16)	-85422	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_70446	chr3	125655168	125655320	+	15.24831	NA	intron (NM_001195223, intron 1 of 6)	intron (NM_001195223, intron 1 of 6)	643	NM_001195223	200810	Hs.591299	NM_001015050	HPRD:18574	ALG1L	ALG1L1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_62499	chr20	60984976	60985210	+	15.24131	NA	TTS (NM_080833)	TTS (NM_080833)	-2754	NM_031215	81928	Hs.301040	NM_031215	HPRD:12994	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
19-PTNLD28-TUMOR_peak_106362	chr9	132245178	132245447	+	15.24131	NA	Intergenic	CpG	-5627	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
19-PTNLD28-TUMOR_peak_1565	chr1	24877981	24878178	+	15.23803	NA	intron (NR_109781, intron 2 of 2)	intron (NR_109781, intron 2 of 2)	4436	NR_109781	100506985	Hs.607088	NR_109781		LOC100506985	-	uncharacterized LOC100506985	ncRNA
19-PTNLD28-TUMOR_peak_105363	chr9	112835188	112835344	+	15.23803	NA	intron (NM_001004065, intron 1 of 3)	intron (NM_001004065, intron 1 of 3)	24388	NM_001198656	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|PRKA2	A kinase (PRKA) anchor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_4204	chr1	68001214	68001404	+	15.23803	NA	Intergenic	Intergenic	-105186	NM_001018068	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_18042	chr11	35110367	35110525	+	15.23803	NA	Intergenic	LTR88b|LTR|Gypsy?	49133	NR_120528	100507144	Hs.673491	NR_120528	ENSG00000255521	LOC100507144	-	uncharacterized LOC100507144	ncRNA
19-PTNLD28-TUMOR_peak_61556	chr20	46551117	46551279	+	15.23803	NA	Intergenic	Intergenic	-60772	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
19-PTNLD28-TUMOR_peak_61936	chr20	50294830	50295202	+	15.23803	NA	intron (NM_006045, intron 9 of 27)	intron (NM_006045, intron 9 of 27)	89892	NM_006045	10079	Hs.649234	NM_006045	HPRD:18541	ATP9A	ATPIIA	ATPase, class II, type 9A	protein-coding
19-PTNLD28-TUMOR_peak_51141	chr2	11484447	11485293	+	15.23725	NA	promoter-TSS (NM_004850)	promoter-TSS (NM_004850)	-159	NM_004850	9475	Hs.681743	NM_004850	HPRD:04922	ROCK2	ROCK-II	Rho-associated, coiled-coil containing protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_82112	chr5	131792291	131792468	+	15.23725	NA	intron (NR_045116, intron 3 of 3)	intron (NR_045116, intron 3 of 3)	34086	NM_002198	3659	Hs.436061	NM_002198	HPRD:00961	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_58743	chr2	230273156	230273433	+	15.23583	NA	intron (NM_139072, intron 9 of 12)	intron (NM_139072, intron 9 of 12)	-137237	NM_001100818	55022	Hs.745038	NM_017933	HPRD:07944	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_41228	chr17	36585352	36585574	+	15.23583	NA	intron (NM_001199417, intron 1 of 23)	intron (NM_001199417, intron 1 of 23)	743	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000225485	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
19-PTNLD28-TUMOR_peak_5040	chr1	95285603	95285968	+	15.23583	NA	promoter-TSS (NM_001258342)	promoter-TSS (NM_001258342)	52	NR_104131	101928079	Hs.596857	NR_104131		LINC01057	-	long intergenic non-protein coding RNA 1057	ncRNA
19-PTNLD28-TUMOR_peak_5308	chr1	108815135	108815866	+	15.23583	NA	Intergenic	CpG	-28797	NM_001143989	148545	Hs.511849	NM_152488	HPRD:08144	NBPF4	-	neuroblastoma breakpoint family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_71710	chr3	150481751	150481900	+	15.23199	NA	promoter-TSS (NM_005067)	promoter-TSS (NM_005067)	-562	NM_005067	6478	Hs.477959	NM_005067	HPRD:03737	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_58914	chr2	234322306	234322466	+	15.22861	NA	intron (NM_152879, intron 3 of 29)	intron (NM_152879, intron 3 of 29)	25586	NM_003648	8527	Hs.471675	NM_003648	HPRD:03492	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
19-PTNLD28-TUMOR_peak_102933	chr9	36258374	36258660	+	15.22861	NA	promoter-TSS (NM_001190384)	promoter-TSS (NM_001190384)	-21	NM_001190384	10020	Hs.5920	NM_005476	HPRD:04825	GNE	DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
19-PTNLD28-TUMOR_peak_16377	chr10	134923748	134923952	+	15.22861	NA	intron (NM_001083909, intron 5 of 6)	intron (NM_001083909, intron 5 of 6)	8100	NM_001291085	84435	Hs.435183	NM_032422	HPRD:17058	GPR123	-	G protein-coupled receptor 123	protein-coding
19-PTNLD28-TUMOR_peak_104191	chr9	86432373	86433198	+	15.22861	NA	promoter-TSS (NM_001135953)	promoter-TSS (NM_001135953)	-33	NM_001135953	80318	Hs.522255	NM_025211	HPRD:17042	GKAP1	GKAP42	G kinase anchoring protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47258	chr19	10871039	10871209	+	15.22861	NA	intron (NM_001005361, intron 2 of 20)	intron (NM_001005361, intron 2 of 20)	-19806	NR_039903	100616425		NR_039903		MIR4748	-	microRNA 4748	ncRNA
19-PTNLD28-TUMOR_peak_62079	chr20	52445363	52445494	+	15.22783	NA	Intergenic	Intergenic	46820	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_82850	chr5	142240747	142240909	+	15.22783	NA	intron (NR_046680, intron 3 of 5)	intron (NR_046680, intron 3 of 5)	7647	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35582	chr16	121500	121673	+	15.22147	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	1043	NM_022450	64285	Hs.744992	NM_022450	HPRD:07027	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44153	chr17	81041565	81041823	+	15.22147	NA	intron (NM_001004431, intron 1 of 3)	intron (NM_001004431, intron 1 of 3)	4127	NM_001004431	284207	Hs.378821	NM_001004431	HPRD:11255	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
19-PTNLD28-TUMOR_peak_13560	chr10	50758657	50758815	+	15.22147	NA	Intergenic	LTR8|LTR|ERV1	-11152	NM_001277059	101243544	Hs.49063	NM_001277058	ENSG00000243251	ERCC6-PGBD3	CPFP|CSB-PGBD3	ERCC6-PGBD3 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_3192	chr1	46390523	46390784	+	15.22147	NA	intron (NM_015112, intron 4 of 28)	MLT1B|LTR|ERVL-MaLR	121368	NM_015112	23139	Hs.319481	NM_015112	HPRD:11294	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_22503	chr12	2986802	2986978	+	15.22080	NA	promoter-TSS (NM_021953)	promoter-TSS (NM_021953)	525	NM_001252500	83695	Hs.198853	NM_001252499	HPRD:17487	RHNO1	C12orf32|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
19-PTNLD28-TUMOR_peak_103729	chr9	72635204	72635512	+	15.22080	NA	Intergenic	L1PBa1|LINE|L1	-23139	NM_153267	256691	Hs.547172	NM_153267	HPRD:14353	MAMDC2	-	MAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_47271	chr19	11026446	11026599	+	15.20077	NA	intron (NM_199141, intron 6 of 15)	intron (NM_199141, intron 6 of 15)	12835	NM_024029	78992	Hs.720136	NM_024029	HPRD:11332	YIPF2	FinGER2	Yip1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_71345	chr3	141171003	141171142	+	15.20077	NA	Intergenic	L2b|LINE|L2	-34854	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_106054	chr9	127533850	127534080	+	15.20077	NA	promoter-TSS (NM_001489)	promoter-TSS (NM_001489)	-376	NM_001278546	2649	Hs.20131	NM_001489	HPRD:04147	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6, group A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_87471	chr6	42016388	42016781	+	15.20070	NA	promoter-TSS (NM_001136126)	promoter-TSS (NM_001136126)	48	NM_001136126	896	Hs.534307	NM_001760	HPRD:00452	CCND3	-	cyclin D3	protein-coding
19-PTNLD28-TUMOR_peak_5642	chr1	113809546	113809686	+	15.19956	NA	Intergenic	L2a|LINE|L2	-60741	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_40959	chr17	30387806	30388062	+	15.19956	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	20579	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_69536	chr3	105546883	105547064	+	15.19956	NA	intron (NM_170662, intron 3 of 18)	MLT1J|LTR|ERVL-MaLR	40914	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_11811	chr10	5580548	5580709	+	15.19956	NA	Intergenic	Intergenic	-12419	NR_120497	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57857	chr2	202980501	202980695	+	15.19956	NA	intron (NM_001277372, intron 11 of 21)	intron (NM_001277372, intron 11 of 21)	42620	NM_001277372	100652824	Hs.686898	NM_001080445		LOC100652824	-	uncharacterized protein KIAA2012	protein-coding
19-PTNLD28-TUMOR_peak_106550	chr9	135897830	135897995	+	15.19956	NA	Intergenic	Intergenic	-8150	NM_001286709	9328	Hs.495417	NM_012087	HPRD:16077	GTF3C5	TFIIIC63|TFIIICepsilon|TFiiiC2-63	general transcription factor IIIC, polypeptide 5, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_48429	chr19	30262737	30262879	+	15.19956	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-40093	NM_001238	898	Hs.244723	NM_001238	HPRD:00455	CCNE1	CCNE	cyclin E1	protein-coding
19-PTNLD28-TUMOR_peak_15971	chr10	122125478	122125639	+	15.19956	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-90908	NM_001030059	196051	Hs.40479	NM_001030059	HPRD:18745	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_68080	chr3	48935970	48936442	+	15.19956	NA	exon (NM_000387, exon 1 of 9)	exon (NM_000387, exon 1 of 9)	220	NM_000387	788	Hs.13845	NM_000387	HPRD:01953	SLC25A20	CAC|CACT	solute carrier family 25 (carnitine/acylcarnitine translocase), member 20	protein-coding
19-PTNLD28-TUMOR_peak_347	chr1	6208745	6209008	+	15.19956	NA	intron (NM_015557, intron 9 of 41)	CpG	31318	NM_015557	26038	Hs.522898	NM_015557	HPRD:10828	CHD5	CHD-5	chromodomain helicase DNA binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_13283	chr10	45403646	45403978	+	15.19956	NA	intron (NR_033842, intron 2 of 7)	intron (NR_033842, intron 2 of 7)	-2952	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_80166	chr5	60626787	60627039	+	15.19643	NA	Intergenic	CpG	-1187	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_22639	chr12	5205589	5205735	+	15.19418	NA	Intergenic	Intergenic	52577	NM_002234	3741	Hs.150208	NM_002234	HPRD:08888	KCNA5	ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding
19-PTNLD28-TUMOR_peak_45034	chr18	25330038	25330249	+	15.19418	NA	Intergenic	Intergenic	427302	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_99127	chr8	70468557	70468742	+	15.19418	NA	intron (NM_015170, intron 3 of 22)	MLT1J2|LTR|ERVL-MaLR	63621	NM_001128205	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_65899	chr22	45371571	45371708	+	15.19418	NA	intron (NM_001284296, intron 2 of 13)	intron (NM_001284296, intron 2 of 13)	33235	NM_001284296	112885	Hs.254097	NM_138415	HPRD:13997	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
19-PTNLD28-TUMOR_peak_28593	chr13	80384862	80385171	+	15.19418	NA	Intergenic	Intergenic	6495	NR_125785	102724076	Hs.208617	NR_125785		LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
19-PTNLD28-TUMOR_peak_36272	chr16	11057976	11058133	+	15.19418	NA	intron (NM_015226, intron 3 of 22)	intron (NM_015226, intron 3 of 22)	19709	NM_001243403	23274	Hs.35490	NM_015226	HPRD:17185	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16, member A	protein-coding
19-PTNLD28-TUMOR_peak_91239	chr7	7275723	7276037	+	15.19418	NA	intron (NM_020156, intron 2 of 3)	intron (NM_020156, intron 2 of 3)	-18905	NR_108073	101927354	Hs.520664	NR_108073		LOC101927354	-	uncharacterized LOC101927354	ncRNA
19-PTNLD28-TUMOR_peak_11202	chr1	237957514	237957643	+	15.19418	NA	intron (NM_001035, intron 95 of 104)	intron (NM_001035, intron 95 of 104)	-67897	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99292	chr8	80996617	80996756	+	15.19418	NA	intron (NM_001025253, intron 1 of 7)	intron (NM_001025253, intron 1 of 7)	-3620	NM_001287140	7163	Hs.368433	NM_005079	HPRD:04963	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
19-PTNLD28-TUMOR_peak_72273	chr3	170235131	170235300	+	15.19418	NA	intron (NM_020949, intron 2 of 7)	intron (NM_020949, intron 2 of 7)	68648	NM_020949	57709	Hs.596660	NM_020949	HPRD:17222	SLC7A14	PPP1R142	solute carrier family 7, member 14	protein-coding
19-PTNLD28-TUMOR_peak_66911	chr3	15547035	15547207	+	15.19418	NA	intron (NM_005677, intron 1 of 16)	intron (NM_005677, intron 1 of 16)	-6742	NM_080538	8292	Hs.146735	NM_005677	HPRD:04328	COLQ	EAD	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_28283	chr13	52138525	52138712	+	15.19418	NA	Intergenic	Intergenic	11893	NR_039852	100616423		NR_039852	miRBase:MI0017336	MIR4703	-	microRNA 4703	ncRNA
19-PTNLD28-TUMOR_peak_90073	chr6	152002129	152002571	+	15.19418	NA	Intergenic	Intergenic	-9281	NM_001122742	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_21204	chr11	112491394	112491572	+	15.19418	NA	Intergenic	Intergenic	-64958	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_75880	chr4	79522263	79522455	+	15.19418	NA	intron (NM_005139, intron 10 of 12)	intron (NM_005139, intron 10 of 12)	-44789	NR_038308	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_56255	chr2	150279559	150279737	+	15.19202	NA	intron (NM_194317, intron 1 of 4)	intron (NM_194317, intron 1 of 4)	92619	NM_194317	130574	Hs.21929	NM_194317	HPRD:14676	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_70965	chr3	133968936	133969402	+	15.19202	NA	intron (NM_001005861, intron 1 of 14)	CpG	417	NM_002958	6259	Hs.654562	NM_002958	HPRD:02751	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_90899	chr7	2338753	2339062	+	15.19202	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	15192	NM_013321	29886	Hs.584900	NM_013321	HPRD:11592	SNX8	Mvp1	sorting nexin 8	protein-coding
19-PTNLD28-TUMOR_peak_73610	chr3	196696608	196696964	+	15.19202	NA	Intergenic	CpG-19308	-1044	NM_025163	80235	Hs.518403	NM_025163	HPRD:18076	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding
19-PTNLD28-TUMOR_peak_6734	chr1	151031224	151031361	+	15.18477	NA	promoter-TSS (NM_006818)	promoter-TSS (NM_006818)	833	NM_020239	56882	Hs.22065	NM_020239	HPRD:16694	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
19-PTNLD28-TUMOR_peak_63398	chr21	37507700	37508384	+	15.18330	NA	intron (NM_001236, intron 1 of 2)	CpG	779	NM_001236	874	Hs.154510	NM_001236	HPRD:07222	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
19-PTNLD28-TUMOR_peak_80510	chr5	70314322	70314671	+	15.18314	NA	intron (NM_004536, intron 3 of 16)	intron (NM_004536, intron 3 of 16)	6445	NM_022892	4671	Hs.654500	NM_004536	ENSG00000249437	NAIP	BIRC1|NLRB1|psiNAIP	NLR family, apoptosis inhibitory protein	protein-coding
19-PTNLD28-TUMOR_peak_35563	chr15	102417998	102418123	+	15.18314	NA	Intergenic	Intergenic	35738	NR_046417	390651	Hs.578689	NR_046417	ENSG00000214344	OR4F13P	GPCRLTM7	olfactory receptor, family 4, subfamily F, member 13 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_108275	chrX	48937464	48937991	+	15.18314	NA	promoter-TSS (NM_001029896)	promoter-TSS (NM_001029896)	-163	NM_001029896	11152	Hs.632807	NM_007075	HPRD:06597	WDR45	NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
19-PTNLD28-TUMOR_peak_17091	chr11	10472343	10472895	+	15.18314	NA	intron (NM_000480, intron 1 of 14)	CpG	395	NM_000480	272	Hs.501890	NM_000480	HPRD:00041	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_40345	chr17	16764569	16764697	+	15.18284	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-28486	NR_029392	400578	Hs.723586	NR_029392	ENSG00000227300	KRT16P2	-	keratin 16 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_103071	chr9	38672463	38672742	+	15.18147	NA	Intergenic	Intergenic	51517	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_10062	chr1	216659378	216659675	+	15.18147	NA	Intergenic	L1PA2|LINE|L1	-62788	NM_007123	7399	Hs.655974	NM_007123	HPRD:02042	USH2A	RP39|US2|USH2|dJ1111A8.1	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
19-PTNLD28-TUMOR_peak_55981	chr2	137833698	137833836	+	15.18147	NA	intron (NM_001080427, intron 2 of 26)	L1PA4|LINE|L1	85305	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_96608	chr7	155114362	155114533	+	15.18147	NA	Intergenic	LTR16D|LTR|ERVL	24961	NM_005542	3638	Hs.520819	NM_005542	HPRD:03633	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
19-PTNLD28-TUMOR_peak_72700	chr3	183187060	183187541	+	15.18147	NA	Intergenic	Intergenic	21861	NR_038301	100505687	Hs.551751	NR_038301	ENSG00000240024	LINC00888	-	long intergenic non-protein coding RNA 888	ncRNA
19-PTNLD28-TUMOR_peak_8184	chr1	171882689	171883052	+	15.18147	NA	intron (NM_001136127, intron 1 of 19)	intron (NM_001136127, intron 1 of 19)	72252	NM_001136127	26052	Hs.654775	NM_015569	HPRD:13241	DNM3	Dyna III	dynamin 3	protein-coding
19-PTNLD28-TUMOR_peak_79857	chr5	52856442	52856911	+	15.18147	NA	intron (NM_002495, intron 1 of 4)	CpG	211	NM_002495	4724	Hs.528222	NM_002495	HPRD:04073	NDUFS4	AQDQ|CI-18	NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)	protein-coding
19-PTNLD28-TUMOR_peak_23554	chr12	28185794	28186092	+	15.18147	NA	Intergenic	Intergenic	-61027	NM_198965	5744	Hs.591159	NM_002820	HPRD:01348	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone-like hormone	protein-coding
19-PTNLD28-TUMOR_peak_77917	chr4	165272353	165272489	+	15.18147	NA	intron (NM_001166373, intron 1 of 7)	L1PA2|LINE|L1	31986	NM_001166373	55016	Hs.592804	NM_017923	HPRD:07940	MARCH1	MARCH-I|RNF171	membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_91151	chr7	6215390	6215528	+	15.18147	NA	intron (NM_004227, intron 5 of 12)	AluSx1|SINE|Alu	70909	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
19-PTNLD28-TUMOR_peak_79410	chr5	33828142	33828286	+	15.18147	NA	intron (NM_030955, intron 2 of 23)	L1ME5|LINE|L1	63910	NM_030955	81792	Hs.12680	NM_030955	HPRD:05862	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif, 12	protein-coding
19-PTNLD28-TUMOR_peak_25353	chr12	75874392	75874683	+	15.18147	NA	promoter-TSS (NM_006851)	promoter-TSS (NM_006851)	24	NM_006851	11010	Hs.205558	NM_006851		GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis-related 1	protein-coding
19-PTNLD28-TUMOR_peak_61194	chr20	42306677	42306883	+	15.18147	NA	intron (NM_001278610, intron 2 of 12)	SVA_D|Other|Other	11121	NM_001278610	4605	Hs.179718	NM_002466	HPRD:03247	MYBL2	B-MYB|BMYB	v-myb avian myeloblastosis viral oncogene homolog-like 2	protein-coding
19-PTNLD28-TUMOR_peak_103117	chr9	39882325	39882464	+	15.18147	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2548	NM_001085452	647060	Hs.575677	NM_001040065	ENSG00000204848	SPATA31A1	C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2	SPATA31 subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_74584	chr4	14667354	14667526	+	15.18147	NA	Intergenic	L1PA2|LINE|L1	336229	NR_038857	441009	Hs.535004	NR_038857	ENSG00000247624	CPEB2-AS1	-	CPEB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_87822	chr6	46900363	46900517	+	15.18147	NA	intron (NM_015234, intron 1 of 20)	intron (NM_015234, intron 1 of 20)	-10726	NM_001098518	221395	Hs.362806	NM_015234	HPRD:11010	GPR116	KPG_001	G protein-coupled receptor 116	protein-coding
19-PTNLD28-TUMOR_peak_76796	chr4	120060513	120060761	+	15.18147	NA	intron (NM_016599, intron 2 of 5)	intron (NM_016599, intron 2 of 5)	3698	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_77315	chr4	141949180	141949601	+	15.18147	NA	intron (NM_020724, intron 1 of 6)	intron (NM_020724, intron 1 of 6)	105226	NM_020724	57484	Hs.659104	NM_020724	HPRD:15258	RNF150	-	ring finger protein 150	protein-coding
19-PTNLD28-TUMOR_peak_102014	chr9	4127034	4127248	+	15.18147	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	25042	NM_152629	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_83009	chr5	146807440	146807776	+	15.18147	NA	intron (NM_001197294, intron 1 of 13)	intron (NM_001197294, intron 1 of 13)	25652	NM_001387	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_89027	chr6	109156542	109156672	+	15.18036	NA	Intergenic	Intergenic	-13012	NM_001286609	84071	Hs.645481	NM_032131	HPRD:09809	ARMC2	bA787I22.1	armadillo repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_32271	chr14	104637715	104638064	+	15.18036	NA	intron (NM_015656, intron 5 of 14)	intron (NM_015656, intron 5 of 14)	32829	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
19-PTNLD28-TUMOR_peak_7779	chr1	162792154	162792396	+	15.18036	NA	Intergenic	CpG	31779	NM_016371	51478	Hs.492925	NM_016371	HPRD:05996	HSD17B7	PRAP|SDR37C1	hydroxysteroid (17-beta) dehydrogenase 7	protein-coding
19-PTNLD28-TUMOR_peak_84697	chr6	1124225	1124571	+	15.18036	NA	Intergenic	Intergenic	-22831	NR_027115	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
19-PTNLD28-TUMOR_peak_81021	chr5	83018260	83018419	+	15.18036	NA	Intergenic	CpG	-1443	NM_001884	1404	Hs.2799	NM_001884	HPRD:00275	HAPLN1	CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38390	chr16	67995431	67995843	+	15.18036	NA	intron (NM_001145962, intron 1 of 22)	intron (NM_001145962, intron 1 of 22)	2331	NM_001145963	6560	Hs.10094	NM_005072	HPRD:04987	SLC12A4	KCC1	solute carrier family 12 (potassium/chloride transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_94990	chr7	121878613	121879152	+	15.18036	NA	Intergenic	L1PA2|LINE|L1	-64830	NR_036484	154860	Hs.664204	NR_036484	ENSG00000230316	FEZF1-AS1	-	FEZF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_84214	chr5	175560338	175560610	+	15.18036	NA	Intergenic	Intergenic	13922	NR_038402	100507387	Hs.368516	NR_038402	ENSG00000182230	LOC100507387	-	uncharacterized LOC100507387	ncRNA
19-PTNLD28-TUMOR_peak_26600	chr12	120033788	120034134	+	15.18036	NA	intron (NM_001136534, intron 1 of 2)	intron (NM_001136534, intron 1 of 2)	2697	NM_001136534	387890	Hs.530965	NM_001136534	ENSG00000224982	TMEM233	DSPB2|IFITMD2	transmembrane protein 233	protein-coding
19-PTNLD28-TUMOR_peak_40273	chr17	14942761	14943014	+	15.18036	NA	Intergenic	Intergenic	8595	NR_033371	94150	Hs.147654	NR_033371	ENSG00000259944	CDRT7	LINC00025|NCRNA00025	CMT1A duplicated region transcript 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77965	chr4	168817367	168817548	+	15.18036	NA	Intergenic	LTR2B|LTR|ERV1	-196231	NM_007193	11199	Hs.188401	NM_007193	HPRD:09724	ANXA10	ANX14	annexin A10	protein-coding
19-PTNLD28-TUMOR_peak_49337	chr19	45280856	45281205	+	15.18018	NA	promoter-TSS (NM_012116)	promoter-TSS (NM_012116)	-96	NM_001130852	23624	Hs.466907	NM_012116	HPRD:09765	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_72624	chr3	181418338	181418491	+	15.18018	NA	intron (NR_075089, intron 3 of 3)	intron (NR_075089, intron 3 of 3)	-11298	NM_003106	6657	Hs.518438	NM_003106	HPRD:08921	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
19-PTNLD28-TUMOR_peak_51497	chr2	21215298	21215435	+	15.18018	NA	Intergenic	Intergenic	51579	NM_000384	338	Hs.120759	NM_000384	HPRD:00133	APOB	FLDB|LDLCQ4	apolipoprotein B	protein-coding
19-PTNLD28-TUMOR_peak_73040	chr3	187686747	187686996	+	15.18018	NA	Intergenic	Intergenic	-184790	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_96472	chr7	152219119	152219278	+	15.17058	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	57989	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
19-PTNLD28-TUMOR_peak_57806	chr2	202083650	202083759	+	15.17058	NA	3' UTR (NM_032976, exon 9 of 9)	3' UTR (NM_032976, exon 9 of 9)	-14462	NM_033355	841	Hs.599762	NM_001228	HPRD:03459	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_84442	chr5	178287341	178287511	+	15.17027	NA	intron (NM_058230, intron 1 of 4)	CpG	472	NM_058230	117608	Hs.724051	NM_058230		ZNF354B	KID2	zinc finger protein 354B	protein-coding
19-PTNLD28-TUMOR_peak_7188	chr1	155210982	155211139	+	15.16779	NA	promoter-TSS (NM_001171812)	promoter-TSS (NM_001171812)	6	NM_001171812	2629	Hs.282997	NM_000157	HPRD:06973	GBA	GBA1|GCB|GLUC	glucosidase, beta, acid	protein-coding
19-PTNLD28-TUMOR_peak_37423	chr16	32699121	32699278	+	15.15672	NA	Intergenic	Intergenic	-11749	NR_110910	24150	Hs.592038	NM_015369		TP53TG3	P53TG3|TP53TG3A	TP53 target 3	protein-coding
19-PTNLD28-TUMOR_peak_43364	chr17	72990717	72990864	+	15.15672	NA	intron (NM_014603, intron 1 of 4)	AluJb|SINE|Alu	7063	NM_014603	30850	Hs.78358	NM_014603	HPRD:11041	CDR2L	HUMPPA	cerebellar degeneration-related protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_8103	chr1	169498085	169498320	+	15.15650	NA	intron (NM_000130, intron 16 of 24)	intron (NM_000130, intron 16 of 24)	-42994	NM_006996	10560	Hs.30246	NM_006996	HPRD:04897	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_96936	chr8	6734815	6735340	+	15.15304	NA	intron (NM_005218, intron 1 of 1)	intron (NM_005218, intron 1 of 1)	452	NM_005218	1672	Hs.32949	NM_005218	HPRD:03634	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_61563	chr20	46608147	46608427	+	15.15304	NA	TTS (NR_110027)	TTS (NR_110027)	-3683	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
19-PTNLD28-TUMOR_peak_70308	chr3	124269372	124269521	+	15.15304	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-34060	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_37765	chr16	50491454	50491831	+	15.15304	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-88797	NM_001173984	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_74177	chr4	6564668	6564827	+	15.15304	NA	intron (NM_001206994, intron 1 of 9)	intron (NM_001206994, intron 1 of 9)	580	NM_001206994	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_71608	chr3	149108632	149108821	+	15.14995	NA	Intergenic	LTR16A|LTR|ERVL	-13158	NM_014220	4071	Hs.351316	NM_014220	HPRD:01854	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding
19-PTNLD28-TUMOR_peak_76811	chr4	120376890	120377162	+	15.14995	NA	intron (NR_037630, intron 1 of 8)	intron (NR_037630, intron 1 of 8)	1088	NR_037630	645513	Hs.677546	NR_037630	ENSG00000245958	LOC645513	-	uncharacterized LOC645513	ncRNA
19-PTNLD28-TUMOR_peak_15923	chr10	120840059	120840469	+	15.14523	NA	promoter-TSS (NM_003750)	promoter-TSS (NM_003750)	70	NM_003750	8661	Hs.523299	NM_003750	HPRD:03618	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3, subunit A	protein-coding
19-PTNLD28-TUMOR_peak_15347	chr10	104195609	104195741	+	15.14523	NA	promoter-TSS (NR_030169)	promoter-TSS (NR_030169)	-594	NR_030169	574447		NR_030169	miRBase:MI0003129	MIR146B	MIRN146B|miRNA146B	microRNA 146b	ncRNA
19-PTNLD28-TUMOR_peak_50013	chr19	51437047	51437183	+	15.14252	NA	Intergenic	L1ME5|LINE|L1	19229	NM_012427	25818	Hs.50915	NM_012427	HPRD:05732	KLK5	KLK-L2|KLKL2|SCTE	kallikrein-related peptidase 5	protein-coding
19-PTNLD28-TUMOR_peak_43388	chr17	73151313	73151576	+	15.14252	NA	promoter-TSS (NM_001002032)	promoter-TSS (NM_001002032)	-666	NM_001288611	51155	Hs.532803	NM_016185	HPRD:13665	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_13252	chr10	44542049	44542261	+	15.14006	NA	Intergenic	Intergenic	137403	NR_033846	283033	Hs.730228	NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
19-PTNLD28-TUMOR_peak_72692	chr3	183025186	183025523	+	15.14006	NA	intron (NM_015078, intron 10 of 29)	intron (NM_015078, intron 10 of 29)	54322	NM_032047	84002	Hs.718506	NM_032047	HPRD:12511	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_40411	chr17	17684418	17684733	+	15.13887	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-1732	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_22101	chr11	129323405	129323655	+	15.13887	NA	Intergenic	Intergenic	77649	NM_003658	8538	Hs.591944	NM_003658	HPRD:16074	BARX2	-	BARX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_57997	chr2	206579553	206579750	+	15.13887	NA	intron (NM_003872, intron 2 of 16)	intron (NM_003872, intron 2 of 16)	32427	NM_201264	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_2360	chr1	36038824	36039219	+	15.13887	NA	promoter-TSS (NM_178548)	promoter-TSS (NM_178548)	50	NM_178548	339488	Hs.567844	NM_178548	HPRD:18174	TFAP2E	AP2E	transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)	protein-coding
19-PTNLD28-TUMOR_peak_73883	chr4	2047538	2047718	+	15.13887	NA	Intergenic	Intergenic	3851	NM_001141936	401115	Hs.446474	NM_001141936	ENSG00000243449	C4orf48	CHR4_55	chromosome 4 open reading frame 48	protein-coding
19-PTNLD28-TUMOR_peak_100827	chr8	128832650	128832900	+	15.13700	NA	Intergenic	Intergenic	24567	NR_031609	100302185		NR_031609	miRBase:MI0006337	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
19-PTNLD28-TUMOR_peak_61833	chr20	49204600	49204911	+	15.13700	NA	intron (NM_080829, intron 20 of 21)	intron (NM_080829, intron 20 of 21)	2432	NR_030375	693230		NR_030375	miRBase:MI0003660	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
19-PTNLD28-TUMOR_peak_35323	chr15	93449992	93450276	+	15.13700	NA	intron (NM_001271, intron 2 of 38)	Tigger12c|DNA|TcMar-Tigger	2505	NR_036136	100422995		NR_036136		MIR3175	-	microRNA 3175	ncRNA
19-PTNLD28-TUMOR_peak_102964	chr9	36970617	36970764	+	15.13554	NA	intron (NM_001280553, intron 4 of 7)	intron (NM_001280553, intron 4 of 7)	63786	NM_001280548	5079	Hs.654464	NM_016734	HPRD:01334	PAX5	ALL3|BSAP	paired box 5	protein-coding
19-PTNLD28-TUMOR_peak_65862	chr22	44759532	44759737	+	15.13554	NA	Intergenic	Intergenic	-50903	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
19-PTNLD28-TUMOR_peak_104804	chr9	99106891	99106997	+	15.13554	NA	intron (NR_104627, intron 7 of 12)	intron (NR_104627, intron 7 of 12)	39048	NR_104627	11046	Hs.494556	NM_007001	HPRD:16456	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2	protein-coding
19-PTNLD28-TUMOR_peak_45516	chr18	44238296	44238479	+	15.13554	NA	Intergenic	Intergenic	-1391	NM_144612	125336	Hs.345877	NM_144612	HPRD:08316	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_26932	chr12	124265376	124265797	+	15.13554	NA	intron (NM_207437, intron 5 of 77)	intron (NM_207437, intron 5 of 77)	18544	NM_207437	196385	Hs.622654	NM_207437	HPRD:13473	DNAH10	-	dynein, axonemal, heavy chain 10	protein-coding
19-PTNLD28-TUMOR_peak_100054	chr8	108509471	108509825	+	15.13554	NA	exon (NM_001146, exon 1 of 9)	exon (NM_001146, exon 1 of 9)	606	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_56334	chr2	152748260	152748524	+	15.13554	NA	intron (NM_001005746, intron 2 of 13)	intron (NM_001005746, intron 2 of 13)	-63383	NM_012097	26225	Hs.470233	NM_012097		ARL5A	ARFLP5|ARL5	ADP-ribosylation factor-like 5A	protein-coding
19-PTNLD28-TUMOR_peak_101341	chr8	139948491	139948715	+	15.13554	NA	Intergenic	Intergenic	-22367	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_68758	chr3	64017545	64017686	+	15.13554	NA	Intergenic	Intergenic	-7929	NM_001271780	9861	Hs.152536	NM_014814	HPRD:18370	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding
19-PTNLD28-TUMOR_peak_64495	chr22	21239907	21240247	+	15.13554	NA	intron (NM_004782, intron 4 of 4)	intron (NM_004782, intron 4 of 4)	26785	NM_004782	9342	Hs.108002	NM_004782	HPRD:11968	SNAP29	CEDNIK|SNAP-29	synaptosomal-associated protein, 29kDa	protein-coding
19-PTNLD28-TUMOR_peak_19049	chr11	62725997	62726339	+	15.13554	NA	Intergenic	Intergenic	26327	NM_153278	9356	Hs.369252	NM_004790	HPRD:12125	SLC22A6	HOAT1|OAT1|PAHT|ROAT1	solute carrier family 22 (organic anion transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_91533	chr7	21656772	21657058	+	15.13554	NA	intron (NM_001277115, intron 22 of 81)	intron (NM_001277115, intron 22 of 81)	74082	NM_001277115	8701	Hs.520245	NM_001277115	HPRD:09134	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein, axonemal, heavy chain 11	protein-coding
19-PTNLD28-TUMOR_peak_13183	chr10	43606256	43606434	+	15.13554	NA	intron (NM_020630, intron 6 of 18)	intron (NM_020630, intron 6 of 18)	-27548	NM_018590	55454	Hs.657569	NM_018590	HPRD:11348	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_15916	chr10	120760260	120760564	+	15.13554	NA	Intergenic	Intergenic	-28816	NM_199461	340719	Hs.591918	NM_199461	HPRD:16302	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_8594	chr1	181013699	181013991	+	15.13554	NA	intron (NM_001195035, intron 2 of 4)	MER115|DNA|hAT-Tip100	11284	NM_001194999	3140	Hs.13500	NM_001531	HPRD:09012	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
19-PTNLD28-TUMOR_peak_99725	chr8	101502669	101502863	+	15.13554	NA	Intergenic	Intergenic	69173	NM_001270378	157567	Hs.530199	NM_198401	HPRD:14103	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
19-PTNLD28-TUMOR_peak_30186	chr14	50429428	50429646	+	15.13200	NA	Intergenic	Intergenic	-3580	NR_106724	102464828		NR_106724		MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
19-PTNLD28-TUMOR_peak_19163	chr11	64387154	64387470	+	15.13073	NA	intron (NM_138734, intron 6 of 6)	intron (NM_138734, intron 6 of 6)	23475	NM_138734	9379	Hs.372938	NM_015080	HPRD:11859	NRXN2	-	neurexin 2	protein-coding
19-PTNLD28-TUMOR_peak_98062	chr8	31288505	31288805	+	15.13073	NA	Intergenic	MER31B|LTR|ERV1	-208613	NM_013962	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_39571	chr17	738689	738892	+	15.13073	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	28561	NM_001205319	64359	Hs.527989	NM_022463	HPRD:14858	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
19-PTNLD28-TUMOR_peak_54805	chr2	110271747	110271923	+	15.13073	NA	Intergenic	Intergenic	99948	NM_178584	151011	Hs.469615	NM_144710	HPRD:15325	SEPT10	-	septin 10	protein-coding
19-PTNLD28-TUMOR_peak_67883	chr3	45718570	45718955	+	15.13073	NA	TTS (NR_033947)	TTS (NR_033947)	11612	NR_033947	644714	Hs.712889	NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69094	chr3	74003800	74003966	+	15.13073	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-329811	NM_015009	23024	Hs.743998	NM_015009	HPRD:15115	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_59666	chr20	5509707	5509849	+	15.12235	NA	Intergenic	Intergenic	-19130	NR_109860	101929207	Hs.516871	NR_109860		LOC101929207	-	uncharacterized LOC101929207	ncRNA
19-PTNLD28-TUMOR_peak_106209	chr9	130666911	130667155	+	15.12235	NA	intron (NR_104629, intron 1 of 5)	intron (NR_104629, intron 1 of 5)	594	NR_104629	30815	Hs.109672	NM_013443	HPRD:18111	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_54929	chr2	111983594	111983769	+	15.12235	NA	Intergenic	Intergenic	94982	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_1939	chr1	30176472	30176666	+	15.12235	NA	Intergenic	Intergenic	333890	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_42178	chr17	48065423	48065612	+	15.12235	NA	Intergenic	Intergenic	7071	NM_005220	1747	Hs.134194	NM_005220	HPRD:02752	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_33916	chr15	63414369	63414750	+	15.12235	NA	intron (NM_001288585, intron 1 of 4)	CpG	560	NM_171846	114294	Hs.410388	NM_032857	HPRD:07466	LACTB	G24|MRPL56	lactamase, beta	protein-coding
19-PTNLD28-TUMOR_peak_92031	chr7	36352145	36352789	+	15.12235	NA	Intergenic	Intergenic	54315	NM_001199707	23366	Hs.6224	NM_015314	HPRD:17197	KIAA0895	-	KIAA0895	protein-coding
19-PTNLD28-TUMOR_peak_55433	chr2	122118244	122118422	+	15.12235	NA	intron (NM_001142274, intron 35 of 37)	intron (NM_001142274, intron 35 of 37)	-75555	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_94362	chr7	100499589	100499828	+	15.12235	NA	Intergenic	Intergenic	-6116	NM_001282449	43	Hs.154495	NM_000665	HPRD:00010	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
19-PTNLD28-TUMOR_peak_96234	chr7	149550359	149550579	+	15.12121	NA	intron (NM_001099220, intron 5 of 7)	intron (NM_001099220, intron 5 of 7)	14960	NM_001099220	643641	Hs.731923	NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
19-PTNLD28-TUMOR_peak_24243	chr12	51702118	51702276	+	15.11267	NA	intron (NM_001290007, intron 2 of 12)	intron (NM_001290007, intron 2 of 12)	15785	NM_001290008	51411	Hs.14770	NM_016293	HPRD:05805	BIN2	BRAP-1	bridging integrator 2	protein-coding
19-PTNLD28-TUMOR_peak_25853	chr12	102848959	102849116	+	15.11267	NA	intron (NM_001111285, intron 2 of 3)	intron (NM_001111285, intron 2 of 3)	23392	NM_001111284	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_29772	chr14	32811484	32811636	+	15.11267	NA	intron (NM_004274, intron 1 of 13)	L2|LINE|L2	13081	NM_004274	9472	Hs.509083	NM_004274	HPRD:05257	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
19-PTNLD28-TUMOR_peak_45619	chr18	46002364	46002509	+	15.11267	NA	Intergenic	Intergenic	-62991	NM_014772	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_71850	chr3	155100341	155100446	+	15.11267	NA	Intergenic	Intergenic	-88904	NR_037902	100507537	Hs.518341	NR_037902	ENSG00000240045	LOC100507537	-	uncharacterized LOC100507537	ncRNA
19-PTNLD28-TUMOR_peak_63598	chr21	41109712	41109926	+	15.11267	NA	Intergenic	MER21B|LTR|ERVL	-7515	NM_001080444	150084	Hs.422120	NM_001080444	ENSG00000183067	IGSF5	GSF5|JAM4	immunoglobulin superfamily, member 5	protein-coding
19-PTNLD28-TUMOR_peak_52455	chr2	43986363	43986660	+	15.11267	NA	intron (NM_172069, intron 27 of 29)	L2a|LINE|L2	-14667	NM_016008	51626	Hs.371597	NM_015522	HPRD:13116	DYNC2LI1	D2LIC|LIC3	dynein, cytoplasmic 2, light intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_90003	chr6	150989600	150989804	+	15.11267	NA	intron (NM_001029884, intron 2 of 16)	intron (NM_001029884, intron 2 of 16)	68703	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_100023	chr8	107593138	107593284	+	15.11267	NA	intron (NM_018002, intron 3 of 15)	intron (NM_018002, intron 3 of 15)	-76825	NM_181354	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_5077	chr1	96836476	96836598	+	15.11267	NA	intron (NR_110693, intron 1 of 5)	intron (NR_110693, intron 1 of 5)	3144	NR_110693	101928241	Hs.514137	NR_110693	ENSG00000231987	LOC101928241	-	uncharacterized LOC101928241	ncRNA
19-PTNLD28-TUMOR_peak_93922	chr7	91884735	91884888	+	15.11267	NA	intron (NM_019004, intron 1 of 19)	intron (NM_019004, intron 1 of 19)	9263	NM_019004	54467	Hs.83293	NM_019004	ENSG00000001629	ANKIB1	-	ankyrin repeat and IBR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16254	chr10	130730849	130730996	+	15.11267	NA	Intergenic	Intergenic	-534532	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_60389	chr20	29920968	29921091	+	15.11267	NA	Intergenic	L1PA3|LINE|L1	-24641	NM_001037731	245930	Hs.580703	NM_001037731	ENSG00000215545	DEFB116	DEFB-16	defensin, beta 116	protein-coding
19-PTNLD28-TUMOR_peak_53873	chr2	86307132	86307265	+	15.11267	NA	intron (NM_015425, intron 9 of 33)	intron (NM_015425, intron 9 of 33)	26080	NM_015425	25885	Hs.531818	NM_015425	HPRD:10161	POLR1A	A190|RPA1|RPA194|RPO1-4|RPO14	polymerase (RNA) I polypeptide A, 194kDa	protein-coding
19-PTNLD28-TUMOR_peak_76399	chr4	101659667	101659806	+	15.11267	NA	Intergenic	Intergenic	-63466	NR_046811	100874275	Hs.136318	NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
19-PTNLD28-TUMOR_peak_3609	chr1	54417448	54417672	+	15.11267	NA	intron (NM_001256409, intron 2 of 8)	intron (NM_001256409, intron 2 of 8)	5561	NM_001256409	115353	Hs.40094	NM_052940	HPRD:14711	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding
19-PTNLD28-TUMOR_peak_56989	chr2	173319957	173320099	+	15.11267	NA	intron (NM_001079818, intron 1 of 24)	intron (NM_001079818, intron 1 of 24)	27714	NM_001079818	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_60241	chr20	24081129	24081537	+	15.11086	NA	Intergenic	Intergenic	-99070	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	FLJ33581	-	uncharacterized LOC400839	ncRNA
19-PTNLD28-TUMOR_peak_49401	chr19	45981771	45981961	+	15.11086	NA	Intergenic	tRNA-SeC(e)-TGA|tRNA|tRNA	10613	NM_006732	2354	Hs.590958	NM_006732	HPRD:01270	FOSB	AP-1|G0S3|GOS3|GOSB	FBJ murine osteosarcoma viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_37653	chr16	48151506	48151662	+	15.10958	NA	intron (NM_033226, intron 11 of 28)	intron (NM_033226, intron 11 of 28)	29097	NM_033226	94160	Hs.410111	NM_033226	HPRD:06128	ABCC12	MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
19-PTNLD28-TUMOR_peak_23415	chr12	25133365	25133625	+	15.10958	NA	Intergenic	AluJb|SINE|Alu	16878	NM_001101339	196415	Hs.434453	NM_001101339	ENSG00000226397	C12orf77	-	chromosome 12 open reading frame 77	protein-coding
19-PTNLD28-TUMOR_peak_74665	chr4	17551133	17551473	+	15.10958	NA	Intergenic	AluY|SINE|Alu	-27624	NM_015907	51056	Hs.570791	NM_015907	HPRD:07516	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_78056	chr4	173919728	173920118	+	15.10958	NA	intron (NM_001034845, intron 10 of 12)	L2c|LINE|L2	-169981	NM_017423	51809	Hs.548088	NM_017423	HPRD:10386	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_106794	chr9	139858867	139859087	+	15.10958	NA	Intergenic	Intergenic	12209	NM_178536	286256	Hs.440519	NM_178536	HPRD:13978	LCN12	-	lipocalin 12	protein-coding
19-PTNLD28-TUMOR_peak_38089	chr16	57897561	57897715	+	15.10958	NA	Intergenic	Intergenic	53089	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_88635	chr6	87433522	87433918	+	15.10958	NA	Intergenic	L2a|LINE|L2	-213304	NM_000865	3354	Hs.1611	NM_000865	HPRD:01635	HTR1E	5-HT1E	5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_7907	chr1	165519252	165519392	+	15.10958	NA	intron (NM_001005214, intron 1 of 1)	intron (NM_001005214, intron 1 of 1)	5844	NM_001005214	440699	Hs.664975	NM_001005214	HPRD:13396	LRRC52	-	leucine rich repeat containing 52	protein-coding
19-PTNLD28-TUMOR_peak_34155	chr15	68309632	68309859	+	15.10958	NA	Intergenic	LTR35|LTR|ERV1	-36827	NM_016166	8554	Hs.162458	NM_016166	HPRD:16029	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT, 1	protein-coding
19-PTNLD28-TUMOR_peak_101884	chr9	427061	427323	+	15.10958	NA	intron (NM_001193536, intron 33 of 46)	intron (NM_001193536, intron 33 of 46)	-43102	NM_001256876	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_90869	chr7	1915073	1915193	+	15.10958	NA	intron (NM_001013836, intron 18 of 18)	intron (NM_001013836, intron 18 of 18)	-31244	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	ncRNA
19-PTNLD28-TUMOR_peak_86216	chr6	27182551	27182692	+	15.10958	NA	Intergenic	AluSx|SINE|Alu	-32881	NM_005865	10279	Hs.274407	NM_005865	HPRD:06205	PRSS16	TSSP	protease, serine, 16 (thymus)	protein-coding
19-PTNLD28-TUMOR_peak_103910	chr9	77853328	77853542	+	15.10958	NA	Intergenic	HERVL18-int|LTR|ERVL	150037	NM_012383	26578	Hs.494192	NM_012383	HPRD:17808	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_65156	chr22	31998448	31998671	+	15.10958	NA	intron (NM_001007467, intron 16 of 32)	intron (NM_001007467, intron 16 of 32)	18958	NR_106959	102465666		NR_106959		MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
19-PTNLD28-TUMOR_peak_55295	chr2	120176807	120177038	+	15.10958	NA	Intergenic	MER34A1|LTR|ERV1	-12524	NM_183240	140738	Hs.26216	NM_183240	HPRD:15536	TMEM37	PR|PR1	transmembrane protein 37	protein-coding
19-PTNLD28-TUMOR_peak_94617	chr7	103893306	103893469	+	15.10958	NA	Intergenic	LTR16A|LTR|ERVL	-44892	NM_002553	5001	Hs.432948	NM_002553	HPRD:09086	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex, subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_102890	chr9	35814558	35814837	+	15.10841	NA	intron (NM_032593, intron 1 of 4)	CpG	345	NM_032593	84681	Hs.70573	NM_032593	HPRD:17106	HINT2	HIT-17	histidine triad nucleotide binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18928	chr11	61729147	61729602	+	15.10841	NA	intron (NM_001300787, intron 8 of 9)	intron (NM_001300787, intron 8 of 9)	5758	NM_002032	2495	Hs.524910	NM_002032	HPRD:00615	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin, heavy polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_94430	chr7	101129733	101130003	+	15.10772	NA	intron (NM_133457, intron 3 of 12)	intron (NM_133457, intron 3 of 12)	82418	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_43059	chr17	65427439	65427635	+	15.10772	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	54140	NM_012417	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_98072	chr8	31679130	31679305	+	15.10558	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	181949	NM_013962	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_59461	chr20	1789882	1790078	+	15.10558	NA	Intergenic	Intergenic	-29588	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_9776	chr1	206867807	206868216	+	15.10558	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	9646	NM_004759	9261	Hs.643566	NM_004759	HPRD:11882	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_10799	chr1	230907839	230907982	+	15.10423	NA	intron (NM_016452, intron 7 of 18)	intron (NM_016452, intron 7 of 18)	24749	NM_016452	10753	Hs.498021	NM_006615	HPRD:05909	CAPN9	GC36|nCL-4	calpain 9	protein-coding
19-PTNLD28-TUMOR_peak_43267	chr17	71338318	71338480	+	15.09859	NA	intron (NM_001144952, intron 44 of 44)	intron (NM_001144952, intron 44 of 44)	-30256	NM_012121	23580	Hs.3903	NM_012121	HPRD:08383	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
19-PTNLD28-TUMOR_peak_67832	chr3	45079249	45079482	+	15.09859	NA	Intergenic	Intergenic	11606	NM_003278	7123	Hs.476092	NM_003278	HPRD:01759	CLEC3B	TN|TNA	C-type lectin domain family 3, member B	protein-coding
19-PTNLD28-TUMOR_peak_36630	chr16	19448601	19448877	+	15.09859	NA	intron (NM_001105249, intron 2 of 20)	MLT1K|LTR|ERVL-MaLR	-19033	NM_024780	79838	Hs.115838	NM_024780	HPRD:15516	TMC5	-	transmembrane channel-like 5	protein-coding
19-PTNLD28-TUMOR_peak_49871	chr19	50230773	50231003	+	15.09859	NA	Intergenic	LTR1C|LTR|ERV1	35627	NM_021733	60385	Hs.515858	NM_021733	HPRD:09748	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis-specific serine kinase substrate	protein-coding
19-PTNLD28-TUMOR_peak_19745	chr11	70414637	70414872	+	15.09660	NA	intron (NR_110766, intron 2 of 8)	intron (NR_110766, intron 2 of 8)	-62445	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_94669	chr7	105292924	105293100	+	15.09660	NA	intron (NM_138495, intron 2 of 9)	intron (NM_138495, intron 2 of 9)	26597	NM_138495	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_39629	chr17	1531685	1531832	+	15.09660	NA	promoter-TSS (NM_001284498)	promoter-TSS (NM_001284498)	-89	NM_001284498	124935	Hs.160550	NM_152346	HPRD:15390	SLC43A2	LAT4	solute carrier family 43 (amino acid system L transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_2856	chr1	41968640	41968831	+	15.09150	NA	Intergenic	Intergenic	-18391	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_34449	chr15	74274097	74274706	+	15.09148	NA	Intergenic	Intergenic	10288	NM_001256675	9399	Hs.194816	NM_004809	HPRD:16314	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_82207	chr5	133476249	133476493	+	15.08602	NA	intron (NR_033449, intron 3 of 7)	intron (NR_033449, intron 3 of 7)	25021	NR_033449	6932	Hs.573153	NM_003202	HPRD:01797	TCF7	TCF-1	transcription factor 7 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_86501	chr6	30705319	30705573	+	15.08602	NA	intron (NM_005803, intron 8 of 12)	L2a|LINE|L2	5007	NM_005803	10211	Hs.179986	NM_005803	HPRD:06105	FLOT1	-	flotillin 1	protein-coding
19-PTNLD28-TUMOR_peak_5866	chr1	117710112	117710327	+	15.08602	NA	intron (NR_045603, intron 2 of 5)	L1M5|LINE|L1	36239	NM_001253849	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_14207	chr10	73138199	73138393	+	15.08147	NA	Intergenic	LTR16C|LTR|ERVL	-18395	NM_001171931	64072	Hs.656032	NM_022124	HPRD:05699	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
19-PTNLD28-TUMOR_peak_53401	chr2	71319739	71320212	+	15.07878	NA	Intergenic	LTR12C|LTR|ERV1	24567	NM_017567	55577	Hs.7036	NM_017567	HPRD:08441	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
19-PTNLD28-TUMOR_peak_36342	chr16	12156625	12156821	+	15.07878	NA	intron (NM_032167, intron 9 of 20)	MIRb|SINE|MIR	86121	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_40736	chr17	25821684	25821982	+	15.07878	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	22797	NM_014238	8844	Hs.133534	NM_014238		KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
19-PTNLD28-TUMOR_peak_2575	chr1	38708928	38709085	+	15.07878	NA	Intergenic	Intergenic	-28567	NR_038928	339442	Hs.434245	NR_038928	ENSG00000237290	LINC01343	-	long intergenic non-protein coding RNA 1343	ncRNA
19-PTNLD28-TUMOR_peak_86321	chr6	28505394	28505783	+	15.07878	NA	Intergenic	Intergenic	11799	NM_003996	2880	Hs.248129	NM_001509	HPRD:11941	GPX5	HEL-S-75p	glutathione peroxidase 5 (epididymal androgen-related protein)	protein-coding
19-PTNLD28-TUMOR_peak_95697	chr7	138124145	138124277	+	15.07878	NA	Intergenic	LTR10F|LTR|ERV1	-20868	NM_003852	8805	Hs.490287	NM_003852	HPRD:04556	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
19-PTNLD28-TUMOR_peak_105699	chr9	119152307	119152450	+	15.07878	NA	intron (NM_002581, intron 21 of 21)	L2c|LINE|L2	10507	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102960	chr9	36873359	36873525	+	15.07200	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	-9137	NR_039766	100616278		NR_039766		MIR4540	-	microRNA 4540	ncRNA
19-PTNLD28-TUMOR_peak_17941	chr11	33851106	33851320	+	15.07200	NA	Intergenic	Intergenic	40158	NM_001142316	4005	Hs.34560	NM_005574	HPRD:01586	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2 (rhombotin-like 1)	protein-coding
19-PTNLD28-TUMOR_peak_9661	chr1	205628106	205628276	+	15.07200	NA	3' UTR (NM_033102, exon 5 of 5)	3' UTR (NM_033102, exon 5 of 5)	21439	NM_033102	85414	Hs.278695	NM_033102	HPRD:16312	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45, member 3	protein-coding
19-PTNLD28-TUMOR_peak_100108	chr8	111072996	111073457	+	15.07200	NA	Intergenic	HUERS-P2-int|LTR|ERV1	-86267	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_8484	chr1	178766375	178766580	+	15.07200	NA	intron (NM_001286247, intron 4 of 18)	intron (NM_001286247, intron 4 of 18)	72195	NM_152663	55103	Hs.632485	NM_018037	HPRD:15206	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
19-PTNLD28-TUMOR_peak_39060	chr16	84099283	84099382	+	15.07200	NA	exon (NM_003791, exon 18 of 23)	exon (NM_003791, exon 18 of 23)	-23570	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38, member 8	protein-coding
19-PTNLD28-TUMOR_peak_58561	chr2	222308890	222309078	+	15.07200	NA	intron (NM_004438, intron 9 of 17)	intron (NM_004438, intron 9 of 17)	128026	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_103888	chr9	77112112	77112269	+	15.07200	NA	promoter-TSS (NM_006914)	promoter-TSS (NM_006914)	-62	NM_006914	6096	Hs.494178	NM_006914	HPRD:09062	RORB	NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1	RAR-related orphan receptor B	protein-coding
19-PTNLD28-TUMOR_peak_107697	chrX	17864272	17864472	+	15.07200	NA	intron (NM_001172743, intron 1 of 2)	MER81|DNA|hAT-Blackjack	14575	NR_033348	10742	Hs.446680	NM_021785	HPRD:02199	RAI2	-	retinoic acid induced 2	protein-coding
19-PTNLD28-TUMOR_peak_106717	chr9	138977724	138978101	+	15.07200	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	9219	NM_144653	138151	Hs.112895	NM_144653	HPRD:09831	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2, BEN and BTB (POZ) domain containing	protein-coding
19-PTNLD28-TUMOR_peak_84760	chr6	1798061	1798270	+	15.07200	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	187484	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_87418	chr6	41431151	41431303	+	15.07200	NA	Intergenic	MamRep38|DNA|hAT	-38955	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_7538	chr1	159852370	159852531	+	15.07103	NA	intron (NM_012337, intron 7 of 11)	intron (NM_012337, intron 7 of 11)	17456	NM_012337	25790	Hs.647705	NM_012337	HPRD:05514	CFAP45	CCDC19|NESG1	cilia and flagella associated protein 45	protein-coding
19-PTNLD28-TUMOR_peak_94819	chr7	108095995	108096397	+	15.07103	NA	intron (NM_005010, intron 1 of 27)	CpG	645	NM_001193584	4897	Hs.21422	NM_005010	HPRD:07207	NRCAM	-	neuronal cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_65791	chr22	43376599	43376720	+	15.07103	NA	intron (NM_001184970, intron 1 of 10)	SVA_E|Other|Other	-20772	NM_001184971	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_53351	chr2	70484702	70484885	+	15.07008	NA	promoter-TSS (NM_016297)	promoter-TSS (NM_016297)	-438	NM_016297	51449	Hs.567502	NM_016297	HPRD:11422	PCYOX1	PCL1	prenylcysteine oxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_82954	chr5	145354907	145355186	+	15.06535	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	38920	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_41433	chr17	39595683	39596060	+	15.06535	NA	intron (NM_006771, intron 2 of 6)	MIRb|SINE|MIR	1725	NM_006771	8687	Hs.248188	NM_006771	HPRD:05176	KRT38	HA8|KRTHA8|hHa8	keratin 38	protein-coding
19-PTNLD28-TUMOR_peak_48900	chr19	38901922	38902211	+	15.06535	NA	intron (NM_001146202, intron 13 of 16)	intron (NM_001146202, intron 13 of 16)	8291	NM_174905	147965	Hs.355162	NM_174905	HPRD:14077	FAM98C	-	family with sequence similarity 98, member C	protein-coding
19-PTNLD28-TUMOR_peak_32881	chr15	31656663	31656950	+	15.06535	NA	intron (NM_015995, intron 1 of 1)	MIRb|SINE|MIR	37723	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_30844	chr14	65819978	65820191	+	15.06535	NA	Intergenic	LTR33|LTR|ERVL	-18183	NR_039857	100616176		NR_039857	miRBase:MI0017341	MIR4708	-	microRNA 4708	ncRNA
19-PTNLD28-TUMOR_peak_90881	chr7	2103362	2103518	+	15.06535	NA	intron (NM_001013836, intron 12 of 18)	intron (NM_001013836, intron 12 of 18)	169143	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_61328	chr20	44031680	44031832	+	15.06501	NA	intron (NR_003189, intron 3 of 5)	AluJr|SINE|Alu	-2877	NM_001197139	55861	Hs.730643	NM_018478	HPRD:12763	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_104910	chr9	100954427	100954605	+	15.06034	NA	intron (NM_052820, intron 1 of 11)	CpG	440	NM_052820	7464	Hs.113094	NM_003389	HPRD:03695	CORO2A	CLIPINB|IR10|WDR2	coronin, actin binding protein, 2A	protein-coding
19-PTNLD28-TUMOR_peak_87186	chr6	37178285	37178534	+	15.05804	NA	Intergenic	Intergenic	40487	NM_001243186	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_91257	chr7	8302004	8302339	+	15.05804	NA	promoter-TSS (NM_001136020)	promoter-TSS (NM_001136020)	71	NM_001276478	3382	Hs.487561	NM_004968	HPRD:00971	ICA1	ICA69|ICAp69	islet cell autoantigen 1, 69kDa	protein-coding
19-PTNLD28-TUMOR_peak_41613	chr17	41445645	41445811	+	15.05804	NA	Intergenic	Intergenic	20538	NR_027412	100130581	Hs.546897	NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
19-PTNLD28-TUMOR_peak_17531	chr11	18946971	18947266	+	15.05804	NA	Intergenic	L1PA8|LINE|L1	9431	NM_147199	259249	Hs.711459	NM_147199	HPRD:06246	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS-related GPR, member X1	protein-coding
19-PTNLD28-TUMOR_peak_48959	chr19	39443275	39443540	+	15.05804	NA	promoter-TSS (NM_148169)	promoter-TSS (NM_148169)	-80	NM_148169	115290	Hs.531770	NM_024907	HPRD:16436	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
19-PTNLD28-TUMOR_peak_6346	chr1	145758626	145759004	+	15.05804	NA	intron (NM_002614, intron 7 of 9)	intron (NM_002614, intron 7 of 9)	31149	NM_001201326	5174	Hs.444751	NM_002614	HPRD:04829	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23630	chr12	31522620	31522865	+	15.05804	NA	Intergenic	Intergenic	-43583	NM_001135812	58516	Hs.505154	NM_021238	HPRD:16588	FAM60A	C12orf14|TERA	family with sequence similarity 60, member A	protein-coding
19-PTNLD28-TUMOR_peak_63114	chr21	32369076	32369321	+	15.05804	NA	Intergenic	Intergenic	41597	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_59462	chr20	1790488	1790742	+	15.05804	NA	Intergenic	L2a|LINE|L2	-30223	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_34397	chr15	72929085	72929703	+	15.05804	NA	Intergenic	CpG	-17644	NM_018652	55889	Hs.546408	NM_018652		GOLGA6B	GOLGA|GOLGA6D	golgin A6 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_19670	chr11	69354973	69355157	+	15.05804	NA	Intergenic	Intergenic	54736	NR_120545	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_29216	chr13	114812867	114813122	+	15.05804	NA	intron (NM_007368, intron 3 of 23)	L1ME1|LINE|L1	85101	NM_007368	22821	Hs.593075	NM_007368	HPRD:05537	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
19-PTNLD28-TUMOR_peak_52661	chr2	47562319	47562481	+	15.05804	NA	intron (NR_110208, intron 1 of 4)	intron (NR_110208, intron 1 of 4)	9813	NR_110207	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA
19-PTNLD28-TUMOR_peak_5209	chr1	101704348	101704547	+	15.05290	NA	5' UTR (NM_001400, exon 2 of 2)	5' UTR (NM_001400, exon 2 of 2)	2142	NM_001400	1901	Hs.154210	NM_001400	HPRD:03578	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_87185	chr6	37175900	37176039	+	15.05290	NA	Intergenic	L2a|LINE|L2	38047	NM_001243186	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_103359	chr9	46380905	46381107	+	15.05290	NA	Intergenic	Intergenic	6367	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_61274	chr20	43490343	43490506	+	15.05290	NA	Intergenic	MIR3|SINE|MIR	-23816	NM_139323	7529	Hs.643544	NM_003404	HPRD:03184	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta	protein-coding
19-PTNLD28-TUMOR_peak_36066	chr16	5130399	5130561	+	15.05290	NA	intron (NM_019109, intron 9 of 12)	intron (NM_019109, intron 9 of 12)	8670	NM_019109	56052	Hs.592086	NM_019109		ALG1	CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_39630	chr17	1532057	1532418	+	15.05290	NA	promoter-TSS (NM_001284498)	promoter-TSS (NM_001284498)	-57	NM_152346	124935	Hs.160550	NM_152346	HPRD:15390	SLC43A2	LAT4	solute carrier family 43 (amino acid system L transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_93469	chr7	75880312	75880750	+	15.05290	NA	intron (NM_001291831, intron 3 of 15)	intron (NM_001291831, intron 3 of 15)	49320	NM_001291831	222183	Hs.511025	NM_001039212	HPRD:08219	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
19-PTNLD28-TUMOR_peak_35980	chr16	4343950	4344142	+	15.05110	NA	Intergenic	Intergenic	-21045	NM_003223	7023	Hs.513305	NM_003223	HPRD:11795	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
19-PTNLD28-TUMOR_peak_63808	chr21	44362454	44362597	+	15.05110	NA	Intergenic	LTR10A|LTR|ERV1	-32095	NM_001286258	5316	Hs.431043	NM_004571	HPRD:03653	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_41588	chr17	41174342	41174530	+	15.05110	NA	promoter-TSS (NM_006373)	promoter-TSS (NM_006373)	23	NM_006373	10493	Hs.514199	NM_006373	HPRD:05220	VAT1	VATI	vesicle amine transport 1	protein-coding
19-PTNLD28-TUMOR_peak_20845	chr11	102138420	102138606	+	15.05110	NA	Intergenic	Intergenic	-49668	NM_182962	330	Hs.127799	NM_001165	HPRD:03426	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_99873	chr8	103750368	103750617	+	15.05110	NA	Intergenic	Intergenic	-82362	NM_005655	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_43314	chr17	72423348	72423522	+	15.04719	NA	Intergenic	Intergenic	-4232	NM_022036	55890	Hs.446438	NM_018653		GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor, class C, group 5, member C	protein-coding
19-PTNLD28-TUMOR_peak_87119	chr6	36647046	36647311	+	15.04715	NA	intron (NM_001220778, intron 1 of 2)	CpG	691	NM_001220778	1026	Hs.370771	NM_000389	HPRD:00298	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin-dependent kinase inhibitor 1A (p21, Cip1)	protein-coding
19-PTNLD28-TUMOR_peak_80344	chr5	66530593	66530988	+	15.03856	NA	Intergenic	Intergenic	-38173	NM_005582	4064	Hs.87205	NM_005582	HPRD:03749	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
19-PTNLD28-TUMOR_peak_60057	chr20	18882864	18883309	+	15.03856	NA	Intergenic	Intergenic	-72247	NM_001242671	100128496	Hs.664484	NM_001242671	ENSG00000149443	C20orf78	dJ1068E13.1	chromosome 20 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_15459	chr10	105683202	105683638	+	15.03856	NA	Intergenic	L2|LINE|L2	-5375	NM_024928	79991	Hs.62314	NM_024928		OBFC1	AAF-44|AAF44|RPA-32|STN1|bA541N10.2	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
19-PTNLD28-TUMOR_peak_109207	chrX	112145583	112145818	+	15.03856	NA	Intergenic	Intergenic	-61657	NM_133265	154796	Hs.528051	NM_133265	HPRD:02327	AMOT	-	angiomotin	protein-coding
19-PTNLD28-TUMOR_peak_83499	chr5	157339697	157339965	+	15.03856	NA	Intergenic	Intergenic	-53648	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_33581	chr15	52043382	52043970	+	15.03856	NA	promoter-TSS (NM_001142885)	promoter-TSS (NM_001142885)	-26	NM_001143917	256586	Hs.603629	NM_153374	HPRD:17531	LYSMD2	-	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_27138	chr12	128663522	128663754	+	15.03856	NA	Intergenic	Intergenic	60876	NR_104648	101927694	Hs.524849	NR_104648	ENSG00000256659	LOC101927694	-	uncharacterized LOC101927694	ncRNA
19-PTNLD28-TUMOR_peak_4801	chr1	90403785	90404126	+	15.03856	NA	Intergenic	Intergenic	56570	NR_002830	492303	Hs.550796	NR_002830		GEMIN8P4	-	gem (nuclear organelle) associated protein 8 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_28260	chr13	50985355	50985863	+	15.03856	NA	intron (NR_109974, intron 3 of 6)	intron (NR_109974, intron 3 of 6)	115976	NR_125753	103689915	Hs.722230	NR_125753		DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80885	chr5	78489682	78489883	+	15.03856	NA	Intergenic	Intergenic	-42143	NM_152405	133746	Hs.482605	NM_152405	HPRD:05045	JMY	WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
19-PTNLD28-TUMOR_peak_5152	chr1	100116436	100116577	+	15.03820	NA	intron (NM_017734, intron 1 of 7)	intron (NM_017734, intron 1 of 7)	5075	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_105535	chr9	116344176	116344347	+	15.03820	NA	intron (NM_001282922, intron 1 of 7)	intron (NM_001282922, intron 1 of 7)	1104	NM_001282922	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_42815	chr17	61511182	61511329	+	15.03252	NA	3' UTR (NM_001915, exon 6 of 6)	3' UTR (NM_001915, exon 6 of 6)	6952	NM_001017917	1534	Hs.355264	NM_001915	HPRD:02485	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
19-PTNLD28-TUMOR_peak_76819	chr4	120651388	120651515	+	15.03243	NA	Intergenic	Intergenic	74219	NR_110660	101927007	Hs.143958	NR_110660	ENSG00000250772	LINC01365	-	long intergenic non-protein coding RNA 1365	ncRNA
19-PTNLD28-TUMOR_peak_81694	chr5	115844007	115844201	+	15.03243	NA	intron (NM_020796, intron 1 of 18)	intron (NM_020796, intron 1 of 18)	60910	NR_109879	101927233	Hs.732850	NR_109879		SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27179	chr12	130630270	130630484	+	15.03243	NA	Intergenic	Intergenic	15846	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_59068	chr2	238132021	238132465	+	15.03243	NA	Intergenic	LTR16A1|LTR|ERVL	138159	NM_006710	10920	Hs.531713	NM_006710		COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_30705	chr14	63002693	63002810	+	15.03243	NA	Intergenic	L1HS|LINE|L1	-396060	NR_104063	101954204	Hs.607093	NR_104063		LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
19-PTNLD28-TUMOR_peak_4188	chr1	67578218	67578418	+	15.03243	NA	intron (NM_001276352, intron 5 of 8)	AluJb|SINE|Alu	22336	NM_001276352	400757	Hs.666621	NM_001013674	HPRD:18418	C1orf141	-	chromosome 1 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_52426	chr2	43540578	43540786	+	15.03243	NA	intron (NM_022065, intron 31 of 37)	intron (NM_022065, intron 31 of 37)	86332	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_52869	chr2	56020790	56020928	+	15.03243	NA	Intergenic	L1PA4|LINE|L1	-99814	NM_033109	87178	Hs.388733	NM_033109	HPRD:18493	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_22391	chr12	794583	794925	+	15.03243	NA	Intergenic	Intergenic	-21847	NM_016533	4815	Hs.655804	NM_016533	HPRD:09530	NINJ2	-	ninjurin 2	protein-coding
19-PTNLD28-TUMOR_peak_88467	chr6	80235455	80235800	+	15.03243	NA	intron (NM_181714, intron 1 of 8)	LTR18B|LTR|ERVL	11520	NM_181714	167691	Hs.21945	NM_181714	HPRD:10791	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
19-PTNLD28-TUMOR_peak_23019	chr12	10547404	10547509	+	15.03243	NA	intron (NM_001199805, intron 4 of 12)	LTR5A|LTR|ERVK	-4803	NM_007360	22914	Hs.387787	NM_007360	HPRD:17240	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin-like receptor subfamily K, member 1	protein-coding
19-PTNLD28-TUMOR_peak_71972	chr3	157335992	157336226	+	15.03243	NA	Intergenic	Intergenic	74976	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_69763	chr3	111708067	111708181	+	15.03243	NA	intron (NR_073570, intron 3 of 3)	intron (NR_073570, intron 3 of 3)	-9462	NM_013259	29114	Hs.169330	NM_013259	HPRD:12136	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
19-PTNLD28-TUMOR_peak_88204	chr6	66813996	66814311	+	15.03243	NA	Intergenic	Intergenic	316381	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	solute carrier family 25, member 51 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_41114	chr17	34503794	34503917	+	15.03121	NA	Intergenic	Intergenic	20292	NM_001001437	414062	Hs.454713	NM_001001437	HPRD:14426	CCL3L3	464.2|D17S1718|G0S19-2|LD78|LD78BETA|SCYA3L|SCYA3L1	chemokine (C-C motif) ligand 3-like 3	protein-coding
19-PTNLD28-TUMOR_peak_22927	chr12	8390040	8390290	+	15.02953	NA	intron (NR_120454, intron 1 of 2)	intron (NR_120454, intron 1 of 2)	2154	NR_120455	101927905	Hs.621425	NR_120454		LOC101927905	-	uncharacterized LOC101927905	ncRNA
19-PTNLD28-TUMOR_peak_69532	chr3	105330530	105330676	+	15.02733	NA	Intergenic	LTR8A|LTR|ERV1	245046	NM_001243280	214	Hs.591293	NM_001627	HPRD:03389	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_22381	chr12	656190	656354	+	15.02733	NA	intron (NM_173593, intron 7 of 19)	intron (NM_173593, intron 7 of 19)	63307	NM_001294345	4815	Hs.655804	NM_016533	HPRD:09530	NINJ2	-	ninjurin 2	protein-coding
19-PTNLD28-TUMOR_peak_105338	chr9	112366530	112366709	+	15.02733	NA	Intergenic	Intergenic	-36449	NM_001037293	114299	Hs.591908	NM_053016	HPRD:17817	PALM2	AKAP2	paralemmin 2	protein-coding
19-PTNLD28-TUMOR_peak_35710	chr16	1304089	1304229	+	15.02733	NA	Intergenic	Intergenic	-2114	NM_012217	23430	Hs.677789	NM_012217	HPRD:08345	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
19-PTNLD28-TUMOR_peak_61603	chr20	47116982	47117152	+	15.02733	NA	Intergenic	Intergenic	128413	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_66031	chr22	47158174	47158650	+	15.02733	NA	promoter-TSS (NM_001284304)	promoter-TSS (NM_001284304)	-102	NM_001284303	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_95858	chr7	140473035	140473161	+	15.02733	NA	intron (NM_004333, intron 13 of 17)	HAL1|LINE|L1	-76221	NR_024454	100134713	Hs.534141	NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90715	chr7	149907	150235	+	15.02309	NA	non-coding (NR_108065, exon 1 of 2)	non-coding (NR_108065, exon 1 of 2)	353	NR_108064	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
19-PTNLD28-TUMOR_peak_42292	chr17	48968197	48968368	+	15.02309	NA	Intergenic	FAM|SINE|Alu	-22943	NM_001243877	10140	Hs.703321	NM_005749	HPRD:09273	TOB1	APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
19-PTNLD28-TUMOR_peak_39267	chr16	87428196	87428337	+	15.02241	NA	intron (NM_022818, intron 1 of 3)	intron (NM_022818, intron 1 of 3)	2465	NM_022818	81631	Hs.356061	NM_022818	HPRD:14358	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
19-PTNLD28-TUMOR_peak_64149	chr22	16159878	16160171	+	15.01767	NA	intron (NR_122113, intron 7 of 7)	intron (NR_122113, intron 7 of 7)	-2042	NR_073460	101101776	Hs.617315	NR_073460		BMS1P17	LINC00516	BMS1 pseudogene 17	pseudo
19-PTNLD28-TUMOR_peak_51530	chr2	23510083	23510366	+	15.01092	NA	Intergenic	Intergenic	-98074	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_101912	chr9	696822	696952	+	15.01092	NA	intron (NM_001256877, intron 3 of 12)	intron (NM_001256877, intron 3 of 12)	-9919	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_78750	chr5	6349535	6349911	+	15.01092	NA	Intergenic	Intergenic	-12318	NR_028351	401172	Hs.376760	NM_001001702	HPRD:16934	FLJ33360	-	FLJ33360 protein	ncRNA
19-PTNLD28-TUMOR_peak_70245	chr3	123442516	123442689	+	15.01092	NA	intron (NM_053025, intron 12 of 33)	intron (NM_053025, intron 12 of 33)	34111	NR_046629	100873940	Hs.667316	NR_046629		MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_15116	chr10	99355865	99356070	+	15.01092	NA	TTS (NR_049868)	TTS (NR_049868)	992	NR_049868	100847017		NR_049868	miRBase:MI0019289	MIR5692C2	-	microRNA 5692c-2	ncRNA
19-PTNLD28-TUMOR_peak_68199	chr3	50283740	50283909	+	15.00953	NA	promoter-TSS (NM_001166425)	promoter-TSS (NM_001166425)	-502	NM_001166425	2771	Hs.77269	NM_002070	HPRD:00764	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_39170	chr16	85368461	85368611	+	15.00953	NA	Intergenic	MER34C2|LTR|ERV1	-28605	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_59674	chr20	5730908	5731071	+	15.00923	NA	promoter-TSS (NM_152504)	promoter-TSS (NM_152504)	-54	NM_152504	149840	Hs.529340	NM_152504	HPRD:08681	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
19-PTNLD28-TUMOR_peak_38334	chr16	67360687	67360922	+	15.00923	NA	promoter-TSS (NM_001100915)	promoter-TSS (NM_001100915)	57	NM_018296	55282	Hs.125139	NM_018296	HPRD:08558	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
19-PTNLD28-TUMOR_peak_74991	chr4	39046021	39046617	+	15.00923	NA	promoter-TSS (NM_001171654)	promoter-TSS (NM_001171654)	-132	NM_001171654	51088	Hs.272251	NM_015990	HPRD:10477	KLHL5	-	kelch-like family member 5	protein-coding
19-PTNLD28-TUMOR_peak_10526	chr1	226911428	226911600	+	15.00923	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	15362	NM_002221	3707	Hs.528087	NM_002221	HPRD:00942	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
19-PTNLD28-TUMOR_peak_44858	chr18	20408203	20408391	+	15.00923	NA	Intergenic	L2a|LINE|L2	-41497	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_65693	chr22	41939910	41940216	+	15.00923	NA	exon (NM_138338, exon 2 of 7)	exon (NM_138338, exon 2 of 7)	430	NM_138338	171568	Hs.712617	NM_138338	HPRD:15157	POLR3H	RPC22.9|RPC8	polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)	protein-coding
19-PTNLD28-TUMOR_peak_36923	chr16	24845873	24846039	+	15.00923	NA	Intergenic	Intergenic	-11228	NM_001258413	115584	Hs.164118	NM_052944	ENSG00000158865	SLC5A11	KST1|RKST1|SGLT6|SMIT2	solute carrier family 5 (sodium/inositol cotransporter), member 11	protein-coding
19-PTNLD28-TUMOR_peak_41361	chr17	38347840	38348222	+	15.00923	NA	intron (NM_016339, intron 10 of 14)	MER91A|DNA|hAT-Tip100	-1818	NR_106927	102465523		NR_106927		MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
19-PTNLD28-TUMOR_peak_50814	chr2	1754628	1754846	+	15.00923	NA	Intergenic	L3|LINE|CR1	-6418	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_32855	chr15	31421554	31421725	+	15.00923	NA	intron (NM_001252020, intron 1 of 26)	intron (NM_001252020, intron 1 of 26)	-27710	NM_002420	4308	Hs.155942	NM_002420	HPRD:04656	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_99914	chr8	104152942	104153222	+	15.00923	NA	5' UTR (NM_024812, exon 1 of 3)	5' UTR (NM_024812, exon 1 of 3)	161	NM_001024372	79870	Hs.533446	NM_024812	HPRD:09422	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_87074	chr6	36236184	36236452	+	15.00923	NA	intron (NM_173676, intron 1 of 7)	intron (NM_173676, intron 1 of 7)	-1919	NM_001145717	285848	Hs.407002	NM_173676	HPRD:17869	PNPLA1	ARCI10|dJ50J22.1	patatin-like phospholipase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_100874	chr8	129326794	129327131	+	15.00923	NA	Intergenic	Intergenic	164600	NR_031613	100302281		NR_031613	miRBase:MI0006341	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
19-PTNLD28-TUMOR_peak_86305	chr6	28249231	28249541	+	15.00923	NA	promoter-TSS (NM_001184743)	promoter-TSS (NM_001184743)	72	NM_032507	84547	Hs.144527	NM_032507	HPRD:11426	PGBD1	HUCEP-4|SCAND4|dJ874C20.4	piggyBac transposable element derived 1	protein-coding
19-PTNLD28-TUMOR_peak_89067	chr6	110213752	110213977	+	15.00923	NA	Intergenic	HERV3-int|LTR|ERV1	-85595	NM_005284	2830	Hs.46332	NM_005284	HPRD:02775	GPR6	-	G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_16799	chr11	4196935	4197506	+	15.00890	NA	Intergenic	L1PA3|LINE|L1	-11162	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	ncRNA
19-PTNLD28-TUMOR_peak_27730	chr13	31622727	31622947	+	15.00890	NA	Intergenic	Intergenic	113321	NM_001286503	10808	Hs.743267	NM_006644	HPRD:09990	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109203	chrX	112094510	112094963	+	15.00890	NA	Intergenic	Intergenic	-10693	NM_133265	154796	Hs.528051	NM_133265	HPRD:02327	AMOT	-	angiomotin	protein-coding
19-PTNLD28-TUMOR_peak_56288	chr2	151323346	151323605	+	15.00890	NA	Intergenic	Intergenic	20734	NM_005168	390	Hs.6838	NM_005168	HPRD:04233	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
19-PTNLD28-TUMOR_peak_58379	chr2	218808743	218808956	+	15.00890	NA	promoter-TSS (NM_022648)	promoter-TSS (NM_022648)	-53	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_98025	chr8	30256538	30256668	+	15.00890	NA	intron (NM_001008712, intron 1 of 6)	intron (NM_001008712, intron 1 of 6)	-13686	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	RBPMS-AS1	-	RBPMS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30221	chr14	50844383	50844721	+	15.00890	NA	intron (NM_001282236, intron 2 of 8)	ERVL-B4-int|LTR|ERVL	18090	NM_004196	8814	Hs.280881	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
19-PTNLD28-TUMOR_peak_109822	chrX	151955707	151955891	+	15.00890	NA	Intergenic	Intergenic	-17559	NM_005362	4102	Hs.417816	NM_005362	HPRD:02166	MAGEA3	CT1.3|HIP8|HYPD|MAGE3|MAGEA6	melanoma antigen family A, 3	protein-coding
19-PTNLD28-TUMOR_peak_96517	chr7	153115235	153115387	+	15.00890	NA	Intergenic	Intergenic	-5992	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_22359	chr12	323033	323318	+	15.00630	NA	promoter-TSS (NM_003044)	promoter-TSS (NM_003044)	196	NM_001206931	6539	Hs.437174	NM_003044	HPRD:04358	SLC6A12	BGT-1|BGT1|GAT2	solute carrier family 6 (neurotransmitter transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_62146	chr20	53776666	53776829	+	15.00568	NA	Intergenic	MER77|LTR|ERVL	-262834	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_6256	chr1	145096246	145096545	+	14.99915	NA	promoter-TSS (NM_004892)	promoter-TSS (NM_004892)	-12	NM_004892	9554	Hs.632438	NM_004892		SEC22B	ERS-24|SEC22L1	SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_73663	chr3	197277364	197277525	+	14.99856	NA	intron (NM_203315, intron 1 of 6)	intron (NM_203315, intron 1 of 6)	5414	NM_203314	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_50145	chr19	53167164	53167302	+	14.99536	NA	intron (NM_001277949, intron 1 of 4)	AluSx|SINE|Alu	-25589	NM_001277952	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_92306	chr7	44678867	44679063	+	14.99536	NA	intron (NM_001003941, intron 2 of 8)	intron (NM_001003941, intron 2 of 8)	32844	NM_002541	4967	Hs.488181	NM_002541	HPRD:08938	OGDH	AKGDH|E1k|OGDC	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding
19-PTNLD28-TUMOR_peak_98655	chr8	49229195	49229352	+	14.99536	NA	Intergenic	AmnSINE1|SINE|Deu	-234854	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_32554	chr15	22891997	22892148	+	14.98096	NA	promoter-TSS (NM_014608)	promoter-TSS (NM_014608)	-577	NM_014608	23191	Hs.26704	NM_014608	HPRD:05890	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81976	chr5	127228475	127229047	+	14.97579	NA	Intergenic	Intergenic	190005	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
19-PTNLD28-TUMOR_peak_87209	chr6	37503549	37503743	+	14.97579	NA	Intergenic	CpG	19552	NR_039669	100616413		NR_039669	miRBase:MI0016810	MIR4462	-	microRNA 4462	ncRNA
19-PTNLD28-TUMOR_peak_52940	chr2	60777543	60777736	+	14.97261	NA	intron (NM_022893, intron 1 of 3)	CpG	2994	NM_018014	53335	Hs.370549	NM_018014	HPRD:05949	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_37785	chr16	50753068	50753554	+	14.97261	NA	intron (NM_001293557, intron 5 of 10)	intron (NM_001293557, intron 5 of 10)	20050	NM_001293557	64127	Hs.592072	NM_022162	HPRD:05810	NOD2	ACUG|BLAU|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1	nucleotide-binding oligomerization domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_9527	chr1	204400575	204400688	+	14.96820	NA	intron (NM_002646, intron 29 of 33)	intron (NM_002646, intron 29 of 33)	-19686	NM_032833	84919	Hs.304376	NM_032833	HPRD:17892	PPP1R15B	CREP	protein phosphatase 1, regulatory subunit 15B	protein-coding
19-PTNLD28-TUMOR_peak_51355	chr2	17824580	17824711	+	14.96820	NA	intron (NM_003385, intron 2 of 3)	intron (NM_003385, intron 2 of 3)	102838	NM_003385	7447	Hs.444212	NM_003385	HPRD:02890	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_102009	chr9	4035721	4036057	+	14.96820	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	116294	NM_152629	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_13672	chr10	54714277	54714473	+	14.96820	NA	Intergenic	HERVS71-int|LTR|ERV1	-182915	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_23632	chr12	31543998	31544468	+	14.96820	NA	intron (NM_144973, intron 19 of 20)	L2a|LINE|L2	-65074	NM_001135812	58516	Hs.505154	NM_021238	HPRD:16588	FAM60A	C12orf14|TERA	family with sequence similarity 60, member A	protein-coding
19-PTNLD28-TUMOR_peak_53020	chr2	62952519	62952760	+	14.96820	NA	intron (NM_015252, intron 2 of 24)	L1PA13|LINE|L1	18607	NM_001142614	23301	Hs.271667	NM_015252	HPRD:10109	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_44661	chr18	12597871	12598063	+	14.96820	NA	intron (NM_020148, intron 2 of 15)	intron (NM_020148, intron 2 of 15)	58764	NM_001128627	56907	Hs.515283	NM_020148	HPRD:11600	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_106312	chr9	131636826	131637051	+	14.96820	NA	intron (NM_001287390, intron 1 of 14)	Tigger6a|DNA|TcMar-Tigger	7416	NM_001287390	883	Hs.495250	NM_004059	HPRD:02769	CCBL1	GTK|KAT1|KATI	cysteine conjugate-beta lyase, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_69076	chr3	73543175	73543352	+	14.96820	NA	intron (NM_015009, intron 3 of 9)	MLT1K|LTR|ERVL-MaLR	-27210	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_55110	chr2	114204651	114204846	+	14.96820	NA	intron (NM_172003, intron 4 of 14)	AluJo|SINE|Alu	9480	NM_172003	150472	Hs.531330	NM_172003	HPRD:16687	CBWD2	-	COBW domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_108571	chrX	65152531	65152819	+	14.96820	NA	Intergenic	LTR10F|LTR|ERV1	-86037	NR_029637	407008		NR_029637	miRBase:MI0000300	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
19-PTNLD28-TUMOR_peak_102386	chr9	19471888	19472058	+	14.96820	NA	Intergenic	Intergenic	63048	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_61299	chr20	43765634	43765856	+	14.96773	NA	Intergenic	LTR16B|LTR|ERVL	-12639	NM_080869	128488	Hs.352180	NM_080869	HPRD:15674	WFDC12	C20orf122|SWAM2|WAP2|dJ211D12.4	WAP four-disulfide core domain 12	protein-coding
19-PTNLD28-TUMOR_peak_47534	chr19	13724238	13724489	+	14.96626	NA	Intergenic	Intergenic	-107089	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_65954	chr22	46356452	46356702	+	14.96626	NA	intron (NM_058238, intron 1 of 3)	intron (NM_058238, intron 1 of 3)	16431	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_87494	chr6	42192369	42192485	+	14.96626	NA	TTS (NM_001297573)	TTS (NM_001297573)	-6794	NM_018141	55173	Hs.380887	NM_018141	HPRD:14775	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
19-PTNLD28-TUMOR_peak_107385	chrX	2628294	2628480	+	14.96413	NA	intron (NM_001277710, intron 1 of 10).2	intron (NM_001277710, intron 1 of 10).2	19159	NM_001122898	4267	Hs.653349	NM_002414	HPRD:02434	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
19-PTNLD28-TUMOR_peak_90074	chr6	152084595	152084748	+	14.96413	NA	intron (NM_001122742, intron 2 of 9)	intron (NM_001122742, intron 2 of 9)	-42137	NM_001291230	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_27261	chr12	132568541	132568683	+	14.96413	NA	promoter-TSS (NR_003290)	promoter-TSS (NR_003290)	-216	NR_003290	347918	Hs.122115	NM_182613	HPRD:13413	EP400NL	-	EP400 N-terminal like	pseudo
19-PTNLD28-TUMOR_peak_2555	chr1	38461454	38461874	+	14.96413	NA	TTS (NM_001243878)	TTS (NM_001243878)	-5903	NM_006802	10946	Hs.77897	NM_006802	HPRD:10411	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a, subunit 3, 60kDa	protein-coding
19-PTNLD28-TUMOR_peak_110121	chrY	2578294	2578480	+	14.96413	NA	intron (NM_001277710, intron 1 of 10)	intron (NM_001277710, intron 1 of 10)	19159	NM_001122898	4267	Hs.653349	NM_002414	HPRD:02434	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
19-PTNLD28-TUMOR_peak_18919	chr11	61658092	61658240	+	14.96253	NA	intron (NM_021727, intron 1 of 11)	intron (NM_021727, intron 1 of 11)	851	NM_021727	3995	Hs.21765	NM_021727	HPRD:07547	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
19-PTNLD28-TUMOR_peak_58002	chr2	206622875	206622996	+	14.95810	NA	intron (NM_003872, intron 12 of 16)	intron (NM_003872, intron 12 of 16)	75711	NM_201264	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_83278	chr5	150969543	150969805	+	14.95810	NA	Intergenic	Intergenic	-21169	NM_001447	2196	Hs.591255	NM_001447	HPRD:05041	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT atypical cadherin 2	protein-coding
19-PTNLD28-TUMOR_peak_49129	chr19	41466384	41466580	+	14.95810	NA	Intergenic	Intergenic	-30722	NM_000767	1555	Hs.1360	NM_000767	HPRD:00477	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450, family 2, subfamily B, polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_19532	chr11	67555977	67556275	+	14.95810	NA	Intergenic	Intergenic	16681	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64923	chr22	28116995	28117155	+	14.95810	NA	Intergenic	Intergenic	80411	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_71991	chr3	158048730	158048950	+	14.95810	NA	intron (NM_001271834, intron 4 of 8)	THE1B|LTR|ERVL-MaLR	220999	NM_016625	51319	Hs.591283	NM_016625	HPRD:18006	RSRC1	SFRS21|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding
19-PTNLD28-TUMOR_peak_85127	chr6	7051691	7051931	+	14.95606	NA	Intergenic	CpG	-56019	NM_001168344	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40259	chr17	13965610	13965801	+	14.95278	NA	intron (NR_049718, intron 1 of 2)	intron (NR_049718, intron 1 of 2)	-7014	NM_001303	1352	Hs.462278	NM_001303	HPRD:03673	COX10	-	cytochrome c oxidase assembly homolog 10 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_4772	chr1	89981776	89981881	+	14.95278	NA	Intergenic	Intergenic	-8569	NM_001134476	23507	Hs.482017	NM_015350	HPRD:18145	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_52846	chr2	55390442	55390656	+	14.95278	NA	Intergenic	Intergenic	-68490	NM_001135592	6233	Hs.311640	NM_002954	HPRD:01878	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80	ribosomal protein S27a	protein-coding
19-PTNLD28-TUMOR_peak_97339	chr8	17557194	17557340	+	14.95278	NA	intron (NM_001001924, intron 6 of 14)	intron (NM_001001924, intron 6 of 14)	-2021	NM_020749	57509	Hs.7946	NM_020749	HPRD:11376	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_31215	chr14	73715396	73715522	+	14.95278	NA	intron (NM_173462, intron 5 of 25)	AluJb|SINE|Alu	11254	NM_173462	89932	Hs.509909	NM_173462	HPRD:15099	PAPLN	-	papilin, proteoglycan-like sulfated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_99992	chr8	106743046	106743240	+	14.95278	NA	intron (NM_012082, intron 5 of 7)	intron (NM_012082, intron 5 of 7)	329588	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23405	chr12	24632012	24632307	+	14.95278	NA	intron (NM_152989, intron 1 of 17)	L2b|LINE|L2	83224	NM_152989	6660	Hs.657542	NM_006940	HPRD:18086	SOX5	L-SOX5|L-SOX5B|L-SOX5F	SRY (sex determining region Y)-box 5	protein-coding
19-PTNLD28-TUMOR_peak_66519	chr3	10215604	10215812	+	14.95278	NA	intron (NM_001570, intron 1 of 12)	intron (NM_001570, intron 1 of 12)	9145	NM_001570	3656	Hs.449207	NM_001570	HPRD:04491	IRAK2	IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_71026	chr3	134911828	134912010	+	14.95278	NA	intron (NM_004441, intron 11 of 15)	intron (NM_004441, intron 11 of 15)	397820	NM_004441	2047	Hs.116092	NM_004441	HPRD:02790	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
19-PTNLD28-TUMOR_peak_85815	chr6	19860600	19860766	+	14.95278	NA	Intergenic	Intergenic	23082	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_62377	chr20	57445440	57445701	+	14.95278	NA	intron (NM_001077490, intron 1 of 12)	intron (NM_001077490, intron 1 of 12)	17534	NM_001077490	2778	Hs.125898	NM_000516	HPRD:00761	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH	GNAS complex locus	protein-coding
19-PTNLD28-TUMOR_peak_65252	chr22	35313254	35313489	+	14.95278	NA	Intergenic	Intergenic	-148759	NM_001008494	91464	Hs.567637	NM_001008494	HPRD:17957	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_24279	chr12	52288852	52288972	+	14.95278	NA	Intergenic	Intergenic	7119	NM_182608	341405	Hs.433492	NM_182608	HPRD:12465	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
19-PTNLD28-TUMOR_peak_47235	chr19	10704644	10704951	+	14.95278	NA	Intergenic	Intergenic	-6806	NM_001300887	10053	Hs.18894	NM_005498	HPRD:06296	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor-related protein complex 1, mu 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_77916	chr4	165163265	165163371	+	14.95278	NA	intron (NM_001166373, intron 1 of 7)	L1PA2|LINE|L1	-44455	NM_012403	23520	Hs.661161	NM_012403		ANP32C	PP32R1	acidic (leucine-rich) nuclear phosphoprotein 32 family, member C	protein-coding
19-PTNLD28-TUMOR_peak_92263	chr7	44180908	44181158	+	14.95241	NA	promoter-TSS (NM_021223)	promoter-TSS (NM_021223)	-117	NM_021223	58498	Hs.75636	NM_021223	HPRD:10105	MYL7	MYL2A|MYLC2A	myosin, light chain 7, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_22692	chr12	6075182	6075344	+	14.95241	NA	intron (NM_000552, intron 47 of 51)	intron (NM_000552, intron 47 of 51)	-19865	NM_001278597	57101	Hs.148970	NM_020373	HPRD:11634	ANO2	C12orf3|TMEM16B	anoctamin 2, calcium activated chloride channel	protein-coding
19-PTNLD28-TUMOR_peak_66600	chr3	11282243	11282593	+	14.95241	NA	intron (NM_001098211, intron 1 of 1)	intron (NM_001098211, intron 1 of 1)	-11967	NM_000861	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_60977	chr20	37302905	37303160	+	14.95241	NA	Intergenic	CpG	-50073	NM_080552	140679	Hs.179080	NM_080552	HPRD:18058	SLC32A1	VGAT|VIAAT	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_75105	chr4	42907661	42907925	+	14.95241	NA	intron (NM_001080476, intron 1 of 3)	intron (NM_001080476, intron 1 of 3)	12510	NM_001080476	389207	Hs.162559	NM_001080476	ENSG00000215203	GRXCR1	DFNB25|PPP1R88	glutaredoxin, cysteine rich 1	protein-coding
19-PTNLD28-TUMOR_peak_349	chr1	6230972	6231093	+	14.95241	NA	intron (NM_015557, intron 1 of 41)	intron (NM_015557, intron 1 of 41)	9162	NM_015557	26038	Hs.522898	NM_015557	HPRD:10828	CHD5	CHD-5	chromodomain helicase DNA binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_59475	chr20	1924420	1924643	+	14.95241	NA	Intergenic	L2b|LINE|L2	48705	NM_001040023	140885	Hs.581021	NM_080792	HPRD:03912	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal-regulatory protein alpha	protein-coding
19-PTNLD28-TUMOR_peak_78786	chr5	7927974	7928157	+	14.95241	NA	Intergenic	Intergenic	58848	NM_002454	4552	Hs.481551	NM_002454	HPRD:03979	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
19-PTNLD28-TUMOR_peak_70092	chr3	120215230	120215393	+	14.94667	NA	Intergenic	Intergenic	-45393	NM_007085	11167	Hs.269512	NM_007085		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31291	chr14	75116439	75116584	+	14.94667	NA	Intergenic	Intergenic	-37477	NM_000428	4053	Hs.512776	NM_000428	HPRD:03650	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_7991	chr1	167633456	167633641	+	14.94667	NA	intron (NM_052862, intron 1 of 6)	intron (NM_052862, intron 1 of 6)	34074	NM_052862	92241	Hs.493867	NM_052862	HPRD:10077	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_8355	chr1	175777178	175777528	+	14.94667	NA	Intergenic	AluY|SINE|Alu	-64601	NM_003285	7143	Hs.659864	NM_003285	HPRD:03589	TNR	TN-R	tenascin R	protein-coding
19-PTNLD28-TUMOR_peak_70609	chr3	127997906	127998070	+	14.94667	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	125675	NM_021937	60678	Hs.477498	NM_021937	HPRD:07409	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_15422	chr10	105314718	105314928	+	14.94667	NA	intron (NM_004210, intron 1 of 5)	intron (NM_004210, intron 1 of 5)	-37624	NR_120675	102724341	Hs.599425	NR_120675		NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109246	chrX	115949593	115949940	+	14.94667	NA	Intergenic	HERVH-int|LTR|ERV1	-355572	NM_001017978	203413	Hs.97892	NM_001017978	HPRD:18577	CT83	CXorf61|KK-LC-1|KKLC1	cancer/testis antigen 83	protein-coding
19-PTNLD28-TUMOR_peak_29060	chr13	111007526	111008122	+	14.94667	NA	intron (NM_001846, intron 3 of 47)	intron (NM_001846, intron 3 of 47)	14519	NR_107040	102465872		NR_107040		MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
19-PTNLD28-TUMOR_peak_99842	chr8	103209445	103209908	+	14.94667	NA	Intergenic	Intergenic	41383	NM_001172477	50484	Hs.512592	NM_015713	HPRD:05276	RRM2B	MTDPS8A|MTDPS8B|P53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding
19-PTNLD28-TUMOR_peak_41174	chr17	35806271	35806492	+	14.94667	NA	intron (NM_001488, intron 8 of 15)	intron (NM_001488, intron 8 of 15)	39069	NM_001488	6871	Hs.500066	NM_001488	HPRD:03784	TADA2A	ADA2|ADA2A|TADA2L|hADA2	transcriptional adaptor 2A	protein-coding
19-PTNLD28-TUMOR_peak_105587	chr9	117101525	117101638	+	14.94667	NA	intron (NM_030767, intron 21 of 21)	intron (NM_030767, intron 21 of 21)	9512	NM_000608	5005	Hs.719954	NM_000608	HPRD:00725	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
19-PTNLD28-TUMOR_peak_21239	chr11	113345172	113345521	+	14.94667	NA	intron (NM_016574, intron 1 of 6)	CpG	655	NM_016574	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_103763	chr9	73099518	73099707	+	14.94667	NA	Intergenic	Intergenic	-70039	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_87121	chr6	36650640	36650842	+	14.94589	NA	intron (NM_001220778, intron 1 of 2)	intron (NM_001220778, intron 1 of 2)	4254	NM_001220778	1026	Hs.370771	NM_000389	HPRD:00298	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin-dependent kinase inhibitor 1A (p21, Cip1)	protein-coding
19-PTNLD28-TUMOR_peak_16435	chr11	119930	120053	+	14.94026	NA	Intergenic	AluSz|SINE|Alu	11929	NR_028326	100133161	Hs.645398	NR_028326		LINC01001	-	long intergenic non-protein coding RNA 1001	ncRNA
19-PTNLD28-TUMOR_peak_104950	chr9	101573402	101573608	+	14.94026	NA	intron (NM_024642, intron 1 of 9)	intron (NM_024642, intron 1 of 9)	3524	NM_024642	79695	Hs.47099	NM_024642	HPRD:13561	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
19-PTNLD28-TUMOR_peak_59136	chr2	239075092	239075284	+	14.93812	NA	intron (NM_001291832, intron 7 of 7)	intron (NM_001291832, intron 7 of 7)	7539	NM_001291832	151176	Hs.24951	NM_152521		FAM132B	C1QTNF15|CTRP15	family with sequence similarity 132, member B	protein-coding
19-PTNLD28-TUMOR_peak_50428	chr19	56179451	56179602	+	14.93812	NA	intron (NM_001012478, intron 7 of 11)	intron (NM_001012478, intron 7 of 11)	-7035	NM_013333	29924	Hs.279953	NM_013333	HPRD:06270	EPN1	-	epsin 1	protein-coding
19-PTNLD28-TUMOR_peak_10478	chr1	226297873	226298560	+	14.93729	NA	Intergenic	CpG	47788	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_26937	chr12	124456291	124456477	+	14.93596	NA	intron (NM_025140, intron 1 of 4)	intron (NM_025140, intron 1 of 4)	779	NM_025140	80212	Hs.713131	NM_025140	HPRD:16919	CCDC92	-	coiled-coil domain containing 92	protein-coding
19-PTNLD28-TUMOR_peak_53947	chr2	87752494	87752699	+	14.93510	NA	Intergenic	MIR|SINE|MIR	-2378	NR_024204	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
19-PTNLD28-TUMOR_peak_72765	chr3	184034054	184034223	+	14.93350	NA	intron (NM_001291157, intron 4 of 32)	intron (NM_001291157, intron 4 of 32)	1186	NM_182917	1981	Hs.433750	NM_004953	HPRD:06774	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma, 1	protein-coding
19-PTNLD28-TUMOR_peak_59394	chr20	536584	537203	+	14.92487	NA	Intergenic	L2b|LINE|L2	-12411	NM_001895	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_59561	chr20	3667539	3668020	+	14.92487	NA	3' UTR (NM_023068, exon 21 of 21)	3' UTR (NM_023068, exon 21 of 21)	-5001	NM_153202	80332	Hs.173716	NM_025220	HPRD:06173	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
19-PTNLD28-TUMOR_peak_63073	chr21	30604185	30604413	+	14.92487	NA	intron (NR_027072, intron 1 of 1)	LTR8|LTR|ERV1	38484	NR_027072	193629	Hs.720711	NM_138968	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA
19-PTNLD28-TUMOR_peak_46299	chr18	74157148	74157513	+	14.92487	NA	intron (NM_014643, intron 2 of 7)	intron (NM_014643, intron 2 of 7)	49816	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
19-PTNLD28-TUMOR_peak_96204	chr7	149066695	149066899	+	14.92487	NA	Intergenic	MER31A|LTR|ERV1	84425	NR_036573	155060	Hs.490512	NR_015357	HPRD:17309	LOC155060	-	AI894139 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_70266	chr3	123736439	123736668	+	14.92487	NA	Intergenic	Intergenic	-26354	NM_017578	54763	Hs.567516	NM_017578	HPRD:15269	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
19-PTNLD28-TUMOR_peak_72930	chr3	186220416	186221053	+	14.92336	NA	Intergenic	Intergenic	-9284	NR_033844	253573	Hs.97386	NR_033844	ENSG00000224406	LOC253573	-	uncharacterized LOC253573	ncRNA
19-PTNLD28-TUMOR_peak_43442	chr17	73561219	73561501	+	14.92336	NA	TTS (NM_001015002)	TTS (NM_001015002)	-22779	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
19-PTNLD28-TUMOR_peak_49392	chr19	45946716	45947092	+	14.92108	NA	Intergenic	CpG	-19727	NM_001166049	2067	Hs.435981	NM_001983	HPRD:00533	ERCC1	COFS4|RAD10|UV20	excision repair cross-complementation group 1	protein-coding
19-PTNLD28-TUMOR_peak_70817	chr3	130936187	130936483	+	14.92108	NA	intron (NM_001146003, intron 13 of 15)	Tigger3d|DNA|TcMar-Tigger	-144354	NR_002949	152195	Hs.380350	NM_194289	HPRD:14093	NUDT16P1	NUDT16P	nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_94319	chr7	100161634	100161771	+	14.92108	NA	intron (NM_006076, intron 10 of 11)	intron (NM_006076, intron 10 of 11)	9568	NM_001168682	100316904	Hs.633863	NM_001168682	ENSG00000205307	SAP25	-	Sin3A-associated protein, 25kDa	protein-coding
19-PTNLD28-TUMOR_peak_22698	chr12	6156603	6156797	+	14.91746	NA	intron (NM_000552, intron 16 of 51)	L2c|LINE|L2	77136	NM_000552	7450	Hs.440848	NM_000552	HPRD:01906	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
19-PTNLD28-TUMOR_peak_83780	chr5	168566939	168567085	+	14.91746	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	123686	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	ncRNA
19-PTNLD28-TUMOR_peak_70288	chr3	123991397	123991629	+	14.91746	NA	intron (NM_001024660, intron 5 of 59)	intron (NM_001024660, intron 5 of 59)	-101666	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_68706	chr3	62861878	62862037	+	14.91746	NA	promoter-TSS (NM_003716)	promoter-TSS (NM_003716)	-893	NM_183393	8618	Hs.654933	NM_003716	HPRD:05236	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
19-PTNLD28-TUMOR_peak_58221	chr2	213804856	213805168	+	14.91746	NA	Intergenic	Intergenic	-13952	NR_039936	100616472		NR_039936		MIR4776-2	-	microRNA 4776-2	ncRNA
19-PTNLD28-TUMOR_peak_101026	chr8	132294931	132295096	+	14.91746	NA	Intergenic	Intergenic	-242178	NM_001115	114	Hs.591859	NM_001115	HPRD:00051	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_94437	chr7	101182227	101182501	+	14.91746	NA	intron (NM_133457, intron 4 of 12)	intron (NM_133457, intron 4 of 12)	29922	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_49394	chr19	45954186	45954341	+	14.91176	NA	Intergenic	CpG	-16990	NM_001114171	2354	Hs.590958	NM_006732	HPRD:01270	FOSB	AP-1|G0S3|GOS3|GOSB	FBJ murine osteosarcoma viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_7919	chr1	165738411	165738669	+	14.91176	NA	promoter-TSS (NM_001256164)	promoter-TSS (NM_001256164)	374	NR_125374	100147773	Hs.633824	NR_125374		LOC100147773	-	uncharacterized LOC100147773	ncRNA
19-PTNLD28-TUMOR_peak_49335	chr19	45277532	45277734	+	14.91176	NA	Intergenic	L1ME3C|LINE|L1	-3493	NM_001130852	23624	Hs.466907	NM_012116	HPRD:09765	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_29176	chr13	114147739	114147886	+	14.90754	NA	intron (NM_017905, intron 1 of 12)	intron (NM_017905, intron 1 of 12)	2504	NM_017905	55002	Hs.317593	NM_017905	HPRD:12612	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
19-PTNLD28-TUMOR_peak_100531	chr8	124549895	124550225	+	14.90747	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	3433	NM_058229	114907	Hs.403933	NM_058229	HPRD:05966	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
19-PTNLD28-TUMOR_peak_13926	chr10	65825997	65826166	+	14.89855	NA	Intergenic	LTR13A|LTR|ERVK	544958	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_58389	chr2	218874979	218875135	+	14.89855	NA	Intergenic	CpG	-24600	NR_034176	285180	Hs.570069	NM_198483	HPRD:13539	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_91310	chr7	12609876	12610190	+	14.89855	NA	promoter-TSS (NM_001112706)	promoter-TSS (NM_001112706)	-170	NM_001112706	85477	Hs.633359	NM_033128	HPRD:11539	SCIN	-	scinderin	protein-coding
19-PTNLD28-TUMOR_peak_100662	chr8	126304263	126304406	+	14.89855	NA	intron (NM_173685, intron 5 of 7)	MLT1J2|LTR|ERVL-MaLR	-138229	NM_025195	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_58047	chr2	207854221	207854340	+	14.89855	NA	Intergenic	Intergenic	50002	NM_173077	130749	Hs.684103	NM_173077	HPRD:07098	CPO	-	carboxypeptidase O	protein-coding
19-PTNLD28-TUMOR_peak_98809	chr8	55294564	55295066	+	14.89855	NA	Intergenic	Intergenic	-75680	NM_022454	64321	Hs.98367	NM_022454	HPRD:18085	SOX17	VUR3	SRY (sex determining region Y)-box 17	protein-coding
19-PTNLD28-TUMOR_peak_79973	chr5	55679758	55680344	+	14.89855	NA	Intergenic	L1PA12|LINE|L1	97545	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_49802	chr19	49601127	49601332	+	14.89855	NA	intron (NM_003089, intron 4 of 9)	intron (NM_003089, intron 4 of 9)	12832	NM_003089	6625	Hs.467097	NM_003089	HPRD:01617	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein 70kDa (U1)	protein-coding
19-PTNLD28-TUMOR_peak_109266	chrX	117554494	117554732	+	14.89855	NA	intron (NM_001184966, intron 11 of 17)	intron (NM_001184966, intron 11 of 17)	34256	NR_031685	100302214		NR_031685		MIR1277	MIRN1277|hsa-mir-1277	microRNA 1277	ncRNA
19-PTNLD28-TUMOR_peak_99306	chr8	81203925	81204066	+	14.89855	NA	Intergenic	Intergenic	50371	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_67145	chr3	23591077	23591331	+	14.89855	NA	intron (NR_039621, intron 2 of 2)	intron (NR_039621, intron 2 of 2)	215578	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	ncRNA
19-PTNLD28-TUMOR_peak_35338	chr15	94219061	94219233	+	14.89855	NA	Intergenic	L1PA2|LINE|L1	-180642	NR_120321	101927153	Hs.371900	NR_120321	ENSG00000258476	LOC101927153	-	uncharacterized LOC101927153	ncRNA
19-PTNLD28-TUMOR_peak_64884	chr22	27075091	27075223	+	14.89855	NA	intron (NR_110543, intron 1 of 5)	intron (NR_110543, intron 1 of 5)	6351	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_41727	chr17	42610968	42611182	+	14.89855	NA	Intergenic	Intergenic	-23737	NM_001466	2535	Hs.142912	NM_001466		FZD2	Fz2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_49298	chr19	44716399	44716807	+	14.89855	NA	promoter-TSS (NM_001289171)	promoter-TSS (NM_001289171)	-78	NM_001289166	7770	Hs.298089	NM_182490	HPRD:15752	ZNF227	-	zinc finger protein 227	protein-coding
19-PTNLD28-TUMOR_peak_82592	chr5	139494163	139494461	+	14.89832	NA	exon (NM_005859, exon 1 of 1)	exon (NM_005859, exon 1 of 1)	604	NM_005859	5813	Hs.443121	NM_005859		PURA	PUR-ALPHA|PUR1|PURALPHA	purine-rich element binding protein A	protein-coding
19-PTNLD28-TUMOR_peak_3471	chr1	51797021	51797186	+	14.89832	NA	promoter-TSS (NM_001297662)	promoter-TSS (NM_001297662)	-867	NM_001297662	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
19-PTNLD28-TUMOR_peak_104398	chr9	90928464	90928791	+	14.89832	NA	Intergenic	MER34A1|LTR|ERV1	-74670	NM_006717	10927	Hs.146804	NM_006717	HPRD:18096	SPIN1	SPIN	spindlin 1	protein-coding
19-PTNLD28-TUMOR_peak_40799	chr17	27055151	27055345	+	14.89783	NA	promoter-TSS (NM_178170)	promoter-TSS (NM_178170)	-584	NM_178170	284086	Hs.448468	NM_178170		NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA-related kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_108612	chrX	68114553	68114713	+	14.89639	NA	Intergenic	CpG	65793	NM_004429	1947	Hs.144700	NM_004429	HPRD:02072	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin-B1	protein-coding
19-PTNLD28-TUMOR_peak_51653	chr2	26401792	26402138	+	14.89639	NA	intron (NM_001168241, intron 2 of 5)	CpG	-1620	NM_001191033	150946	Hs.187912	NM_001168241	ENSG00000157833	GAREML	FAM59B	GRB2 associated, regulator of MAPK1-like	protein-coding
19-PTNLD28-TUMOR_peak_80402	chr5	67746116	67746561	+	14.89639	NA	Intergenic	Intergenic	157942	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_15801	chr10	116581358	116582073	+	14.89639	NA	5' UTR (NM_001135051, exon 1 of 17)	5' UTR (NM_001135051, exon 1 of 17)	212	NM_020940	57700	Hs.192619	NM_020940	HPRD:17219	FAM160B1	KIAA1600|bA106M7.3	family with sequence similarity 160, member B1	protein-coding
19-PTNLD28-TUMOR_peak_14282	chr10	74023443	74023652	+	14.89639	NA	Intergenic	AluSx|SINE|Alu	-10130	NM_019058	54541	Hs.744875	NM_019058	HPRD:09662	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_85344	chr6	11367387	11367645	+	14.89639	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	15065	NM_001142393	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_101362	chr8	140922561	140922923	+	14.89639	NA	intron (NM_031466, intron 19 of 22)	intron (NM_031466, intron 19 of 22)	-207443	NM_001282534	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_82175	chr5	133153717	133153963	+	14.89639	NA	Intergenic	Intergenic	150566	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_101851	chr9	13997	14207	+	14.89436	NA	TTS (NM_182905)	TTS (NM_182905)	2115	NR_051986	100287596	Hs.719844	NR_051986		DDX11L5	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5	pseudo
19-PTNLD28-TUMOR_peak_102865	chr9	35680848	35681055	+	14.88433	NA	intron (NM_001216, intron 10 of 10)	intron (NM_001216, intron 10 of 10)	7036	NM_001216	768	Hs.63287	NM_001216	HPRD:04417	CA9	CAIX|MN	carbonic anhydrase IX	protein-coding
19-PTNLD28-TUMOR_peak_52866	chr2	55969276	55969572	+	14.88433	NA	Intergenic	L1PA3|LINE|L1	-48379	NM_033109	87178	Hs.388733	NM_033109	HPRD:18493	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_5821	chr1	117051790	117052211	+	14.88433	NA	Intergenic	Intergenic	61715	NR_026665	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_52972	chr2	61863116	61863263	+	14.88433	NA	Intergenic	HERV16-int|LTR|ERVL	-97771	NM_003400	7514	Hs.370770	NM_003400	HPRD:03975	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
19-PTNLD28-TUMOR_peak_58276	chr2	216870959	216871286	+	14.88433	NA	intron (NM_018000, intron 1 of 4)	intron (NM_018000, intron 1 of 4)	7224	NM_018000	55686	Hs.620391	NM_018000		MREG	DSU|WDT2	melanoregulin	protein-coding
19-PTNLD28-TUMOR_peak_105572	chr9	116986236	116986387	+	14.88433	NA	intron (NM_032888, intron 14 of 60)	MER117|DNA|hAT-Charlie	14597	NR_030255	619556		NR_030255		MIR455	MIRN455|hsa-mir-455	microRNA 455	ncRNA
19-PTNLD28-TUMOR_peak_7902	chr1	165414201	165414576	+	14.88433	NA	non-coding (NR_033824, exon 1 of 2)	non-coding (NR_033824, exon 1 of 2)	204	NM_001256570	6258	Hs.26550	NM_006917	HPRD:01579	RXRG	NR2B3|RXRC	retinoid X receptor, gamma	protein-coding
19-PTNLD28-TUMOR_peak_8379	chr1	176529087	176529270	+	14.88433	NA	intron (NM_021936, intron 2 of 4)	intron (NM_021936, intron 2 of 4)	96871	NM_021936	60676	Hs.187284	NM_020318	HPRD:10156	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
19-PTNLD28-TUMOR_peak_69256	chr3	87138779	87138989	+	14.88433	NA	intron (NR_104153, intron 1 of 2)	intron (NR_104153, intron 1 of 2)	454	NR_104153	100846978	Hs.570649	NR_047469		LINC00506	-	long intergenic non-protein coding RNA 506	ncRNA
19-PTNLD28-TUMOR_peak_97099	chr8	9911698	9911849	+	14.88433	NA	promoter-TSS (NM_001135670)	promoter-TSS (NM_001135670)	-6	NM_012331	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_103686	chr9	71815116	71815236	+	14.88433	NA	intron (NM_201629, intron 1 of 20)	L2b|LINE|L2	-4751	NM_001170415	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_42853	chr17	61960119	61960279	+	14.88433	NA	promoter-TSS (NM_022556)	promoter-TSS (NM_022556)	-897	NM_022558	2689	Hs.406754	NM_002059	HPRD:00750	GH2	GH-V|GHL|GHV|hGH-V	growth hormone 2	protein-coding
19-PTNLD28-TUMOR_peak_19827	chr11	71710947	71711175	+	14.88408	NA	promoter-TSS (NM_001145055)	promoter-TSS (NM_001145055)	88	NM_001145055	10068	Hs.591967	NM_005699	HPRD:04984	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_65980	chr22	46501403	46501767	+	14.88146	NA	intron (NR_027033, intron 4 of 5)	intron (NR_027033, intron 4 of 5)	-7044	NR_029478	406883		NR_029478	miRBase:MI0000062	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
19-PTNLD28-TUMOR_peak_6287	chr1	145285241	145285489	+	14.87741	NA	3' UTR (NM_203458, exon 5 of 5)	3' UTR (NM_203458, exon 5 of 5)	-4405	NR_104217	101929780	Hs.534675	NR_104217		NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family, member 25, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91205	chr7	6869019	6869132	+	14.87540	NA	Intergenic	Intergenic	-3149	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_23446	chr12	26082170	26082485	+	14.87436	NA	Intergenic	Intergenic	28191	NR_038227	100506451	Hs.560092	NR_038227		RASSF8-AS1	-	RASSF8 atnisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25913	chr12	104508499	104508791	+	14.87436	NA	Intergenic	Intergenic	23395	NM_006166	4801	Hs.84928	NM_006166	HPRD:01794	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y, beta	protein-coding
19-PTNLD28-TUMOR_peak_33716	chr15	58358625	58358743	+	14.87436	NA	promoter-TSS (NM_001206897)	promoter-TSS (NM_001206897)	-563	NM_003888	8854	Hs.643455	NM_003888	HPRD:04733	ALDH1A2	RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_43169	chr17	68085932	68086061	+	14.87436	NA	intron (NM_018658, intron 1 of 4)	intron (NM_018658, intron 1 of 4)	14630	NM_018658	3773	Hs.463985	NM_018658	HPRD:16146	KCNJ16	BIR9|KIR5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
19-PTNLD28-TUMOR_peak_21986	chr11	126797608	126797780	+	14.87436	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	-12948	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_24894	chr12	61688060	61688170	+	14.87436	NA	Intergenic	L1PA3|LINE|L1	898505	NM_178539	338811	Hs.269745	NM_178539	HPRD:16876	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	protein-coding
19-PTNLD28-TUMOR_peak_97440	chr8	19794544	19794721	+	14.87436	NA	Intergenic	Intergenic	-1950	NM_000237	4023	Hs.180878	NM_000237	HPRD:01999	LPL	HDLCQ11|LIPD	lipoprotein lipase	protein-coding
19-PTNLD28-TUMOR_peak_53508	chr2	73981136	73981259	+	14.87436	NA	Intergenic	LTR13|LTR|ERVK	-16680	NM_016058	51002	Hs.157401	NM_016058	ENSG00000144034	TPRKB	-	TP53RK binding protein	protein-coding
19-PTNLD28-TUMOR_peak_33886	chr15	63074348	63074645	+	14.87436	NA	intron (NM_015059, intron 41 of 55)	intron (NM_015059, intron 41 of 55)	-41660	NR_029709	406965		NR_029709		MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190	microRNA 190a	ncRNA
19-PTNLD28-TUMOR_peak_71290	chr3	140212227	140212376	+	14.87436	NA	intron (NM_022131, intron 8 of 16)	intron (NM_022131, intron 8 of 16)	15330	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80413	chr5	67952902	67953118	+	14.87436	NA	Intergenic	Intergenic	364614	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_55588	chr2	128821109	128821234	+	14.87436	NA	Intergenic	Intergenic	-27583	NM_020120	56886	Hs.743306	NM_020120	HPRD:12064	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_4159	chr1	66817115	66817600	+	14.87436	NA	intron (NM_001297440, intron 7 of 15)	intron (NM_001297440, intron 7 of 15)	-2704	NM_001297442	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_82862	chr5	142382533	142382851	+	14.87436	NA	intron (NM_015071, intron 11 of 22)	intron (NM_015071, intron 11 of 22)	-134217	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_91851	chr7	30590727	30590952	+	14.87436	NA	intron (NR_038889, intron 6 of 6)	intron (NR_038889, intron 6 of 6)	26556	NR_038889	401320	Hs.561708	NR_038889	ENSG00000196295	LOC401320	-	uncharacterized LOC401320	ncRNA
19-PTNLD28-TUMOR_peak_72695	chr3	183103898	183104050	+	14.87436	NA	intron (NM_015078, intron 2 of 29)	intron (NM_015078, intron 2 of 29)	42083	NM_015078	23101	Hs.208267	NM_015078	HPRD:08308	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
19-PTNLD28-TUMOR_peak_10455	chr1	226033616	226033728	+	14.87436	NA	TTS (NM_000120)	TTS (NM_000120)	20670	NM_000120	2052	Hs.89649	NM_000120	HPRD:00581	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1, microsomal (xenobiotic)	protein-coding
19-PTNLD28-TUMOR_peak_72442	chr3	175042527	175042845	+	14.87436	NA	intron (NM_207015, intron 5 of 13)	intron (NM_207015, intron 5 of 13)	-44643	NR_039952	100616395		NR_039952		MIR4789	-	microRNA 4789	ncRNA
19-PTNLD28-TUMOR_peak_27840	chr13	36767349	36767596	+	14.87436	NA	intron (NM_001282147, intron 4 of 6)	intron (NM_001282147, intron 4 of 6)	21280	NM_001282147	54937	Hs.124519	NM_017826	HPRD:07910	SOHLH2	SPATA28|TEB1|bHLHe81	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding
19-PTNLD28-TUMOR_peak_78377	chr4	186631807	186632072	+	14.87137	NA	intron (NM_001145672, intron 1 of 20)	intron (NM_001145672, intron 1 of 20)	-53816	NM_001145674	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_64296	chr22	18788609	18788803	+	14.87137	NA	Intergenic	Intergenic	-9232	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26519	chr12	117593110	117593312	+	14.87137	NA	intron (NM_033624, intron 11 of 11)	intron (NM_033624, intron 11 of 11)	35089	NM_033624	23014	Hs.740376	NM_015002	HPRD:09948	FBXO21	FBX21	F-box protein 21	protein-coding
19-PTNLD28-TUMOR_peak_95314	chr7	130615025	130615365	+	14.87137	NA	Intergenic	Intergenic	16972	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_46549	chr19	1101852	1102112	+	14.86525	NA	Intergenic	Intergenic	-1943	NM_001039847	2879	Hs.433951	NM_002085	HPRD:11819	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
19-PTNLD28-TUMOR_peak_92942	chr7	66120175	66120364	+	14.85564	NA	intron (NR_110037, intron 1 of 3)	CpG	763	NR_110037	100996437	Hs.667408	NR_110037		LOC100996437	-	uncharacterized LOC100996437	ncRNA
19-PTNLD28-TUMOR_peak_19511	chr11	67351654	67351986	+	14.84917	NA	intron (NM_000852, intron 2 of 6)	CpG-4453	754	NM_000852	2950	Hs.523836	NM_000852	HPRD:00614	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
19-PTNLD28-TUMOR_peak_49151	chr19	41732074	41732473	+	14.84917	NA	promoter-TSS (NM_001278599)	promoter-TSS (NM_001278599)	-387	NM_001278599	558	Hs.590970	NM_001699	HPRD:00171	AXL	JTK11|UFO	AXL receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_107951	chrX	38663183	38663484	+	14.84917	NA	promoter-TSS (NR_046706)	promoter-TSS (NR_046706)	-197	NR_046706	100874211	Hs.662789	NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_84031	chr5	172380797	172381059	+	14.84917	NA	TTS (NR_026683)	TTS (NR_026683)	4850	NR_026683	100268168	Hs.519766	NR_026682	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
19-PTNLD28-TUMOR_peak_44035	chr17	79934422	79934832	+	14.84730	NA	promoter-TSS (NM_024083)	promoter-TSS (NM_024083)	-799	NR_045351	79058	Hs.298351	NM_024083	HPRD:06947	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	alveolar soft part sarcoma chromosome region, candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_44837	chr18	20131509	20131692	+	14.84730	NA	Intergenic	Intergenic	-133722	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_34331	chr15	71407155	71407961	+	14.84730	NA	5' UTR (NM_001102658, exon 1 of 4)	5' UTR (NM_001102658, exon 1 of 4)	281	NM_001102658	196993	Hs.646533	NM_001102658	ENSG00000225362	CT62	-	cancer/testis antigen 62	protein-coding
19-PTNLD28-TUMOR_peak_45670	chr18	47018150	47018442	+	14.84296	NA	promoter-TSS (NM_001199355)	promoter-TSS (NM_001199355)	-197	NR_002572	26790		NR_002572	ENSG00000271982	SNORD58B	RNU58B|U58b	small nucleolar RNA, C/D box 58B	snoRNA
19-PTNLD28-TUMOR_peak_109981	chrX	153685856	153686147	+	14.84296	NA	promoter-TSS (NM_017514)	promoter-TSS (NM_017514)	-620	NM_017514	55558	Hs.632839	NM_017514	HPRD:02062	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
19-PTNLD28-TUMOR_peak_67976	chr3	47323096	47323366	+	14.84296	NA	intron (NM_022342, intron 1 of 19)	intron (NM_022342, intron 1 of 19)	-1099	NM_025010	23276	Hs.517946	NM_025010	HPRD:10017	KLHL18	-	kelch-like family member 18	protein-coding
19-PTNLD28-TUMOR_peak_67829	chr3	45049732	45049970	+	14.84296	NA	intron (NR_023353, intron 5 of 6)	intron (NR_023353, intron 5 of 6)	-17908	NM_003278	7123	Hs.476092	NM_003278	HPRD:01759	CLEC3B	TN|TNA	C-type lectin domain family 3, member B	protein-coding
19-PTNLD28-TUMOR_peak_72590	chr3	179371249	179371436	+	14.84296	NA	intron (NM_003940, intron 1 of 20)	CpG	409	NM_003940	8975	Hs.175322	NM_003940	HPRD:04666	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
19-PTNLD28-TUMOR_peak_26824	chr12	122667548	122667791	+	14.84075	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	2	NM_001098519	254050	Hs.374856	NM_152759	HPRD:14601	LRRC43	-	leucine rich repeat containing 43	protein-coding
19-PTNLD28-TUMOR_peak_66145	chr22	51195158	51195398	+	14.84075	NA	promoter-TSS (NR_026981)	promoter-TSS (NR_026981)	-236	NR_026981	284942	Hs.406135	NM_203302		RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
19-PTNLD28-TUMOR_peak_72075	chr3	159750043	159750245	+	14.84075	NA	TTS (NR_104132)	TTS (NR_104132)	11708	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
19-PTNLD28-TUMOR_peak_43631	chr17	75213279	75213488	+	14.84075	NA	TTS (NM_001144001)	TTS (NM_001144001)	32088	NM_001144001	6397	Hs.464184	NM_003003	HPRD:03295	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_35521	chr15	101548583	101548870	+	14.84075	NA	intron (NM_024652, intron 6 of 33)	CpG	89266	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_48035	chr19	18342089	18342311	+	14.84075	NA	intron (NM_000923, intron 2 of 15)	intron (NM_000923, intron 2 of 15)	-4915	NM_001098818	5143	Hs.132584	NM_000923	HPRD:02529	PDE4C	DPDE1	phosphodiesterase 4C, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_95318	chr7	130644500	130644931	+	14.84015	NA	non-coding (NR_109852, exon 5 of 6)	non-coding (NR_109852, exon 5 of 6)	46492	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_100962	chr8	131276572	131276776	+	14.83806	NA	intron (NM_018482, intron 3 of 29)	intron (NM_018482, intron 3 of 29)	32105	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49264	chr19	44099381	44099508	+	14.83806	NA	exon (NM_001007561, exon 2 of 3)	exon (NM_001007561, exon 2 of 3)	843	NM_001007561	126298	Hs.6217	NM_001007561	HPRD:17161	IRGQ	IRGQ1	immunity-related GTPase family, Q	protein-coding
19-PTNLD28-TUMOR_peak_44274	chr18	2304489	2304684	+	14.83806	NA	Intergenic	Intergenic	266903	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_84225	chr5	175666388	175666541	+	14.83806	NA	intron (NM_198567, intron 1 of 8)	intron (NM_198567, intron 1 of 8)	1094	NM_198567	375484	Hs.719847	NM_198567	HPRD:13486	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO-interacting motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61449	chr20	45197240	45197583	+	14.82960	NA	intron (NM_001011554, intron 11 of 13)	intron (NM_001011554, intron 11 of 13)	-18198	NM_080721	128506	Hs.526636	NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_31763	chr14	93312832	93313086	+	14.82960	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	52383	NM_005113	9950	Hs.104320	NM_005113	HPRD:06079	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
19-PTNLD28-TUMOR_peak_15765	chr10	116132021	116132267	+	14.82960	NA	intron (NM_001001936, intron 1 of 18)	intron (NM_001001936, intron 1 of 18)	32393	NM_001001936	84632	Hs.501106	NM_032550	HPRD:13902	AFAP1L2	KIAA1914|XB130	actin filament associated protein 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_22496	chr12	2893114	2893477	+	14.82960	NA	Intergenic	Intergenic	-10813	NM_002014	2288	Hs.524183	NM_002014		FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FK506 binding protein 4, 59kDa	protein-coding
19-PTNLD28-TUMOR_peak_58723	chr2	228661082	228661459	+	14.82960	NA	Intergenic	Intergenic	-17288	NM_004591	6364	Hs.75498	NM_004591	HPRD:03571	CCL20	CKb4|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	chemokine (C-C motif) ligand 20	protein-coding
19-PTNLD28-TUMOR_peak_43025	chr17	64911284	64911469	+	14.82960	NA	Intergenic	Intergenic	37985	NM_145811	27091	Hs.278907	NM_014404	HPRD:05912	CACNG5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_18032	chr11	34852258	34852490	+	14.82960	NA	Intergenic	Intergenic	-85303	NM_001135024	8050	Hs.502315	NM_003477	HPRD:02002	PDHX	DLDBP|E3BP|OPDX|PDX1|proX	pyruvate dehydrogenase complex, component X	protein-coding
19-PTNLD28-TUMOR_peak_68762	chr3	64095103	64095365	+	14.82960	NA	intron (NM_198859, intron 7 of 7)	intron (NM_198859, intron 7 of 7)	6088	NR_046701	100874242	Hs.668874	NR_046701		PRICKLE2-AS2	-	PRICKLE2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_86154	chr6	26501965	26502134	+	14.82960	NA	exon (NM_001732, exon 2 of 7)	exon (NM_001732, exon 2 of 7)	554	NM_001732	696	Hs.153058	NM_001732	HPRD:03365	BTN1A1	BT|BTN|BTN1	butyrophilin, subfamily 1, member A1	protein-coding
19-PTNLD28-TUMOR_peak_105710	chr9	119370543	119370747	+	14.82960	NA	intron (NM_198187, intron 4 of 8)	L1MEc|LINE|L1	78849	NM_198186	23245	Hs.601562	NM_014010	HPRD:12498	ASTN2	bA67K19.1	astrotactin 2	protein-coding
19-PTNLD28-TUMOR_peak_107131	chrUn_gl000222	134648	134836	+	14.82492	NA	Intergenic	CpG	-45432	NR_037925	647476	Hs.274541	NR_037925		FLJ20518	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1539	chr1	24562809	24562983	+	14.82492	NA	Intergenic	Intergenic	36166	NR_027087	284632	Hs.638906	NR_027087	ENSG00000230023	LOC284632	-	uncharacterized LOC284632	ncRNA
19-PTNLD28-TUMOR_peak_61581	chr20	46815746	46815926	+	14.82392	NA	Intergenic	Intergenic	-172818	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_46530	chr19	984260	984390	+	14.82392	NA	promoter-TSS (NM_024100)	promoter-TSS (NM_024100)	-3	NM_024100	57418	Hs.325321	NM_024100	HPRD:18296	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
19-PTNLD28-TUMOR_peak_52557	chr2	46392130	46392418	+	14.82392	NA	intron (NM_005400, intron 14 of 14)	intron (NM_005400, intron 14 of 14)	-132267	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_17422	chr11	16807178	16807333	+	14.82392	NA	Intergenic	Intergenic	47107	NM_014267	10944	Hs.645792	NM_014267		C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_73981	chr4	3453814	3454016	+	14.82392	NA	Intergenic	LTR24C|LTR|ERV1	10255	NM_001528	3083	Hs.104	NM_001528	HPRD:05184	HGFAC	HGFA	HGF activator	protein-coding
19-PTNLD28-TUMOR_peak_991	chr1	15672437	15672699	+	14.82392	NA	intron (NM_052929, intron 17 of 30)	L3|LINE|CR1	-63823	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_51443	chr2	20366495	20366617	+	14.82322	NA	Intergenic	Intergenic	58371	NM_002997	6382	Hs.224607	NM_002997	HPRD:01718	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
19-PTNLD28-TUMOR_peak_63278	chr21	35303664	35303869	+	14.82322	NA	non-coding (NR_038883, exon 1 of 3)	non-coding (NR_038883, exon 1 of 3)	250	NR_038883	100506334	Hs.532855	NR_038883	ENSG00000237945	LINC00649	-	long intergenic non-protein coding RNA 649	ncRNA
19-PTNLD28-TUMOR_peak_36890	chr16	24121296	24121421	+	14.82322	NA	intron (NM_212535, intron 7 of 16)	SVA_F|Other|Other	-145516	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_56343	chr2	152919068	152919619	+	14.82322	NA	intron (NM_001005746, intron 2 of 13)	intron (NM_001005746, intron 2 of 13)	35892	NM_001005746	785	Hs.120725	NM_000726	HPRD:09057	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
19-PTNLD28-TUMOR_peak_19980	chr11	73685067	73685245	+	14.82322	NA	TTS (NM_003355)	TTS (NM_003355)	8733	NM_003355	7351	Hs.80658	NM_003355		UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding
19-PTNLD28-TUMOR_peak_13967	chr10	69847541	69847675	+	14.82322	NA	Intergenic	Intergenic	-12505	NM_001278185	26091	Hs.51891	NM_015601	HPRD:13646	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
19-PTNLD28-TUMOR_peak_69997	chr3	117716171	117716547	+	14.82322	NA	Intergenic	CpG	-945564	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28212	chr13	49637769	49638002	+	14.82322	NA	intron (NR_103528, intron 2 of 25)	LTR23|LTR|ERV1	-46554	NM_014923	22862	Hs.508010	NM_014923	HPRD:13548	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_85725	chr6	17965709	17965901	+	14.82322	NA	intron (NM_001243423, intron 2 of 2)	intron (NM_001243423, intron 2 of 2)	22049	NM_001105568	63971	Hs.94499	NM_022113	HPRD:09256	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
19-PTNLD28-TUMOR_peak_101331	chr8	139739751	139739883	+	14.82322	NA	intron (NM_152888, intron 23 of 64)	intron (NM_152888, intron 23 of 64)	186419	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_24308	chr12	52526524	52526998	+	14.82322	NA	Intergenic	MER58A|DNA|hAT-Charlie	39408	NR_120440	26628	Hs.524431	NR_120437		OR7E47P	OR7E141	olfactory receptor, family 7, subfamily E, member 47 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_2944	chr1	43388746	43388918	+	14.82088	NA	Intergenic	Intergenic	-35888	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	-	SLC2A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_59771	chr20	10198153	10198376	+	14.82088	NA	intron (NR_040710, intron 1 of 4)	CpG	-1213	NM_003081	6616	Hs.167317	NM_003081	HPRD:02637	SNAP25	RIC-4|RIC4|SEC9|SNAP|SNAP-25|bA416N4.2|dJ1068F16.2	synaptosomal-associated protein, 25kDa	protein-coding
19-PTNLD28-TUMOR_peak_6881	chr1	152420702	152421160	+	14.82088	NA	Intergenic	L2a|LINE|L2	-34181	NM_016190	49860	Hs.242057	NM_016190	HPRD:12720	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
19-PTNLD28-TUMOR_peak_52791	chr2	54196545	54196692	+	14.81975	NA	intron (NM_014614, intron 1 of 46)	intron (NM_014614, intron 1 of 46)	1359	NM_014614	23198	Hs.413801	NM_014614	HPRD:09652	PSME4	PA200	proteasome (prosome, macropain) activator subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_75751	chr4	77228297	77228457	+	14.81555	NA	intron (NM_003943, intron 1 of 1)	CpG	1198	NM_003943	8987	Hs.109590	NM_003943	HPRD:08460	STBD1	GENEX3414	starch binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_24080	chr12	49205050	49205253	+	14.81103	NA	Intergenic	Intergenic	-3064	NM_001206917	784	Hs.250712	NM_000725	HPRD:11879	CACNB3	CAB3|CACNLB3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_61784	chr20	48883542	48883771	+	14.80898	NA	promoter-TSS (NM_001278655)	promoter-TSS (NM_001278655)	-367	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
19-PTNLD28-TUMOR_peak_84085	chr5	173190020	173190154	+	14.80898	NA	Intergenic	AluJb|SINE|Alu	-16875	NR_108027	101928136	Hs.449267	NR_108027		LINC01484	-	long intergenic non-protein coding RNA 1484	ncRNA
19-PTNLD28-TUMOR_peak_29469	chr14	23340279	23340693	+	14.80405	NA	promoter-TSS (NM_014045)	promoter-TSS (NM_014045)	-474	NM_014045	26020	Hs.525232	NM_014045	HPRD:14311	LRP10	LRP9|MST087	low density lipoprotein receptor-related protein 10	protein-coding
19-PTNLD28-TUMOR_peak_57789	chr2	201980827	201981645	+	14.80405	NA	intron (NM_001202517, intron 1 of 8)	CpG	359	NM_001127184	8837	Hs.390736	NM_003879	HPRD:04671	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD-like apoptosis regulator	protein-coding
19-PTNLD28-TUMOR_peak_43212	chr17	70383739	70383893	+	14.79622	NA	Intergenic	Intergenic	205127	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_97118	chr8	10530020	10530211	+	14.79622	NA	promoter-TSS (NM_001040032)	promoter-TSS (NM_001040032)	-32	NM_001040032	203076	Hs.371776	NM_001040032	ENSG00000171060	C8orf74	-	chromosome 8 open reading frame 74	protein-coding
19-PTNLD28-TUMOR_peak_99848	chr8	103329630	103329781	+	14.79622	NA	intron (NM_015902, intron 14 of 58)	L1PA3|LINE|L1	78026	NR_125415	101927221	Hs.492445	NR_125415		LOC101927221	-	uncharacterized LOC101927221	ncRNA
19-PTNLD28-TUMOR_peak_43618	chr17	75065040	75065267	+	14.79622	NA	Intergenic	Intergenic	-19572	NM_001204408	6397	Hs.464184	NM_003003	HPRD:03295	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75881	chr4	79533669	79533797	+	14.79622	NA	Intergenic	Intergenic	-33415	NR_038308	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_85696	chr6	17179572	17179747	+	14.79622	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	77170	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_100361	chr8	120566463	120566745	+	14.79622	NA	Intergenic	AluYf4|SINE|Alu	38644	NR_045555	5168	Hs.190977	NM_006209	HPRD:03037	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_69014	chr3	72349091	72349243	+	14.79622	NA	Intergenic	Intergenic	146607	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_52517	chr2	45514218	45514432	+	14.79622	NA	Intergenic	Intergenic	-32245	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
19-PTNLD28-TUMOR_peak_29679	chr14	28658032	28658203	+	14.79622	NA	Intergenic	L1PA2|LINE|L1	576323	NR_039992	100505967	Hs.668484	NR_039992	ENSG00000258548	LINC00645	-	long intergenic non-protein coding RNA 645	ncRNA
19-PTNLD28-TUMOR_peak_99648	chr8	99049399	99049548	+	14.79622	NA	TTS (NM_030583)	TTS (NM_030583)	4972	NR_002581	26775	Hs.684855	NR_002581		SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
19-PTNLD28-TUMOR_peak_35489	chr15	101056005	101056271	+	14.79622	NA	intron (NM_001290341, intron 3 of 13)	intron (NM_001290341, intron 3 of 13)	28393	NM_001290342	204219	Hs.662371	NM_178842	HPRD:13961	CERS3	ARCI9|LASS3	ceramide synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_86755	chr6	32753765	32753903	+	14.79622	NA	Intergenic	Intergenic	-22504	NM_001300790	3120	Hs.731563	NM_182549	HPRD:09983	HLA-DQB2	HLA-DQB1|HLA-DXB	major histocompatibility complex, class II, DQ beta 2	protein-coding
19-PTNLD28-TUMOR_peak_62227	chr20	55560502	55560615	+	14.79622	NA	Intergenic	Intergenic	-228194	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62403	chr20	57782813	57783074	+	14.79622	NA	intron (NM_178457, intron 3 of 4)	intron (NM_178457, intron 3 of 4)	16868	NM_178457	128611	Hs.473204	NM_178457	ENSG00000124203	ZNF831	C20orf174|dJ492J12.1	zinc finger protein 831	protein-coding
19-PTNLD28-TUMOR_peak_56097	chr2	142212911	142213078	+	14.79622	NA	intron (NM_018557, intron 3 of 90)	intron (NM_018557, intron 3 of 90)	676276	NM_018557	53353	Hs.656461	NM_018557	HPRD:16383	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_89943	chr6	150161793	150161958	+	14.79622	NA	intron (NM_032832, intron 3 of 6)	intron (NM_032832, intron 3 of 6)	-22759	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42960	chr17	63431080	63431317	+	14.79582	NA	Intergenic	Intergenic	126542	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_575	chr1	9188763	9189052	+	14.79582	NA	exon (NM_024980, exon 1 of 4)	exon (NM_024980, exon 1 of 4)	322	NM_024980	80045	Hs.632367	NM_024980		GPR157	-	G protein-coupled receptor 157	protein-coding
19-PTNLD28-TUMOR_peak_95184	chr7	128865109	128865361	+	14.79582	NA	exon (NM_015328, exon 1 of 17)	exon (NM_015328, exon 1 of 17)	380	NM_015328	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_47247	chr19	10772695	10772859	+	14.79582	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	7840	NM_004516	3609	Hs.465885	NM_004516	HPRD:04420	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80	interleukin enhancer binding factor 3, 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_28194	chr13	48877414	48877999	+	14.78555	NA	promoter-TSS (NM_000321)	promoter-TSS (NM_000321)	91	NR_046414	100862704	Hs.374221	NR_046414	ENSG00000231473	LINC00441	-	long intergenic non-protein coding RNA 441	ncRNA
19-PTNLD28-TUMOR_peak_18341	chr11	45676899	45677257	+	14.78555	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	10128	NM_003654	8534	Hs.104576	NM_003654		CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_88210	chr6	69344935	69345302	+	14.78555	NA	promoter-TSS (NM_001704)	promoter-TSS (NM_001704)	-514	NM_001704	577	Hs.13261	NM_001704	HPRD:04064	BAI3	-	brain-specific angiogenesis inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_60014	chr20	17919746	17919930	+	14.78555	NA	Intergenic	Intergenic	23751	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
19-PTNLD28-TUMOR_peak_18794	chr11	60534929	60535123	+	14.78555	NA	exon (NM_001098835, exon 3 of 7)	exon (NM_001098835, exon 3 of 7)	10686	NR_103481	219995	Hs.207465	NM_152717	HPRD:17532	MS4A15	-	membrane-spanning 4-domains, subfamily A, member 15	protein-coding
19-PTNLD28-TUMOR_peak_61148	chr20	40857402	40857553	+	14.78555	NA	intron (NM_133170, intron 16 of 31)	L2a|LINE|L2	-456646	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_6445	chr1	147090128	147090455	+	14.78555	NA	intron (NM_004326, intron 7 of 9)	intron (NM_004326, intron 7 of 9)	52343	NM_016361	51205	Hs.562154	NM_016361		ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
19-PTNLD28-TUMOR_peak_8147	chr1	171220530	171220787	+	14.78555	NA	intron (NM_001282693, intron 1 of 8)	HERVK22-int|LTR|ERVK	3048	NM_001282694	2326	Hs.1424	NM_002021	HPRD:00631	FMO1	-	flavin containing monooxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_49338	chr19	45303812	45303985	+	14.78555	NA	TTS (NM_012116)	TTS (NM_012116)	-8418	NM_005581	4059	Hs.625725	NM_005581	HPRD:00197	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
19-PTNLD28-TUMOR_peak_105514	chr9	116111700	116112236	+	14.78555	NA	exon (NM_017688, exon 1 of 6)	exon (NM_017688, exon 1 of 6)	156	NM_017688	54836	Hs.614517	NM_017688	HPRD:16566	BSPRY	-	B-box and SPRY domain containing	protein-coding
19-PTNLD28-TUMOR_peak_2446	chr1	36850690	36850908	+	14.78035	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	729	NM_001282547	83931	Hs.471768	NM_032017	HPRD:11359	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
19-PTNLD28-TUMOR_peak_68067	chr3	48732809	48733080	+	14.78032	NA	intron (NM_001005910, intron 1 of 2)	intron (NM_001005910, intron 1 of 2)	-9578	NM_184231	51517	Hs.655006	NM_016453	HPRD:09450	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
19-PTNLD28-TUMOR_peak_62359	chr20	57133610	57133827	+	14.77916	NA	intron (NR_034147, intron 6 of 6)	intron (NR_034147, intron 6 of 6)	43283	NR_034147	149773	Hs.685214	NR_034147	ENSG00000231290	APCDD1L-AS1	-	APCDD1L antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_105190	chr9	110103518	110103682	+	14.77916	NA	Intergenic	Intergenic	56550	NM_001244713	5887	Hs.521640	NM_002874	HPRD:06772	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55599	chr2	129079416	129079725	+	14.77837	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-3399	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_87391	chr6	41006990	41007310	+	14.77484	NA	promoter-TSS (NM_173561)	promoter-TSS (NM_173561)	-212	NM_173561	222643	Hs.158357	NM_173561	HPRD:09844	UNC5CL	MUXA|ZUD	unc-5 homolog C (C. elegans)-like	protein-coding
19-PTNLD28-TUMOR_peak_105020	chr9	103349746	103350007	+	14.77484	NA	3' UTR (NM_001018116, exon 2 of 2)	3' UTR (NM_001018116, exon 2 of 2)	9515	NM_001018116	347273	Hs.99004	NM_001018116	HPRD:18599	MURC	CAVIN4|cavin-4	muscle-related coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_27248	chr12	132335876	132336085	+	14.77402	NA	3' UTR (NM_016155, exon 10 of 10)	3' UTR (NM_016155, exon 10 of 10)	23039	NM_016155	4326	Hs.709245	NM_016155	HPRD:03793	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_51594	chr2	25326196	25326400	+	14.77402	NA	intron (NM_014971, intron 3 of 22)	MIR3|SINE|MIR	61325	NM_014971	22979	Hs.4892	NM_014971		EFR3B	KIAA0953	EFR3 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_80231	chr5	62858934	62859330	+	14.77402	NA	Intergenic	Intergenic	398987	NM_000524	3350	Hs.247940	NM_000524		HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_83175	chr5	149570247	149570407	+	14.77402	NA	intron (NM_014228, intron 1 of 13)	intron (NM_014228, intron 1 of 13)	807	NM_014228	6534	Hs.241597	NM_014228	HPRD:09371	SLC6A7	PROT	solute carrier family 6 (neurotransmitter transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_87177	chr6	37112256	37112451	+	14.77402	NA	Intergenic	Intergenic	-25569	NM_002648	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_35989	chr16	4373079	4373695	+	14.76356	NA	Intergenic	Intergenic	4954	NR_110901	101926896	Hs.670300	NR_110901		LOC101926896	-	uncharacterized LOC101926896	ncRNA
19-PTNLD28-TUMOR_peak_21257	chr11	113560645	113560817	+	14.76356	NA	intron (NR_110046, intron 9 of 10)	intron (NR_110046, intron 9 of 10)	16364	NR_110047	80975	Hs.46720	NM_030770	HPRD:05995	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
19-PTNLD28-TUMOR_peak_57886	chr2	203500716	203500859	+	14.76356	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	886	NM_173511	150864	Hs.471130	NM_173511	HPRD:12445	FAM117B	ALS2CR13	family with sequence similarity 117, member B	protein-coding
19-PTNLD28-TUMOR_peak_58450	chr2	219760123	219760290	+	14.76254	NA	Intergenic	Intergenic	14951	NM_025216	80326	Hs.121540	NM_025216	HPRD:16207	WNT10A	OODD|SSPS|STHAG4	wingless-type MMTV integration site family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_57073	chr2	175562050	175562188	+	14.76206	NA	Intergenic	MER20|DNA|hAT-Charlie	-14492	NM_001077269	7456	Hs.128067	NM_003387	HPRD:03835	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_12404	chr10	23664294	23664634	+	14.76206	NA	Intergenic	MER21A|LTR|ERVL	-30692	NM_153714	256815	Hs.522360	NM_153714	HPRD:12585	C10orf67	-	chromosome 10 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_39561	chr17	501230	501370	+	14.76206	NA	intron (NM_018289, intron 11 of 17)	SVA_D|Other|Other	116796	NM_001128159	55275	Hs.461819	NM_018289	HPRD:07720	VPS53	HCCS1|PCH2E|hVps53L|pp13624	vacuolar protein sorting 53 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_17809	chr11	31346761	31346955	+	14.76206	NA	intron (NM_181807, intron 3 of 8)	intron (NM_181807, intron 3 of 8)	44499	NM_181807	341019	Hs.127405	NM_181807	HPRD:12158	DCDC1	-	doublecortin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_17537	chr11	18995853	18996022	+	14.76206	NA	Intergenic	Intergenic	-39388	NM_147199	259249	Hs.711459	NM_147199	HPRD:06246	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS-related GPR, member X1	protein-coding
19-PTNLD28-TUMOR_peak_85559	chr6	14713270	14713439	+	14.76206	NA	Intergenic	Intergenic	-427669	NR_108096	102216342	Hs.563409	NR_108096		LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
19-PTNLD28-TUMOR_peak_19524	chr11	67469398	67469627	+	14.76156	NA	Intergenic	HERVK11-int|LTR|ERVK	-20827	NM_001031615	222	Hs.87539	NM_000695	HPRD:03559	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family, member B2	protein-coding
19-PTNLD28-TUMOR_peak_56746	chr2	165594270	165594429	+	14.76156	NA	intron (NM_001278460, intron 3 of 13)	intron (NM_001278460, intron 3 of 13)	-50062	NR_033309	100337591	Hs.664357	NR_033309		SNORA70F	U70F	small nucleolar RNA, H/ACA box 70F	snoRNA
19-PTNLD28-TUMOR_peak_109294	chrX	118699247	118699518	+	14.76156	NA	promoter-TSS (NM_022101)	promoter-TSS (NM_022101)	-10	NM_001170569	63932	Hs.248572	NM_022101	HPRD:06541	CXorf56	-	chromosome X open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_32032	chr14	100463616	100463940	+	14.76156	NA	Intergenic	Intergenic	-67973	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_30951	chr14	69002173	69002388	+	14.76156	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	258351	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_44859	chr18	20411455	20411711	+	14.76156	NA	Intergenic	Intergenic	-44783	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_59079	chr2	238263681	238263892	+	14.76156	NA	intron (NM_057167, intron 22 of 42)	intron (NM_057167, intron 22 of 42)	59064	NM_057167	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_101822	chr8	146120790	146121022	+	14.76156	NA	intron (NM_021061, intron 1 of 5)	intron (NM_021061, intron 1 of 5)	5940	NM_001109689	58500	Hs.532277	NM_021061	HPRD:15758	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
19-PTNLD28-TUMOR_peak_106993	chrUn_gl000212	90598	90834	+	14.76156	NA	Intergenic	Intergenic	66667	NR_027278	26080	Hs.448583	NR_027278		FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230, member C	ncRNA
19-PTNLD28-TUMOR_peak_3978	chr1	62438828	62439055	+	14.76156	NA	intron (NM_176877, intron 27 of 42)	intron (NM_176877, intron 27 of 42)	-221533	NM_001164835	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74924	chr4	37454692	37454893	+	14.76156	NA	promoter-TSS (NM_001104629)	promoter-TSS (NM_001104629)	-760	NM_001104629	55286	Hs.107527	NM_018302	HPRD:07725	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
19-PTNLD28-TUMOR_peak_27914	chr13	40463295	40463851	+	14.76156	NA	Intergenic	Intergenic	-225301	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_9163	chr1	200948851	200948960	+	14.76156	NA	intron (NM_017596, intron 28 of 33)	intron (NM_017596, intron 28 of 33)	43923	NM_001252103	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19-PTNLD28-TUMOR_peak_64422	chr22	20267877	20268037	+	14.76156	NA	Intergenic	Intergenic	-12141	NM_023004	65078	Hs.30868	NM_023004	HPRD:16123	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
19-PTNLD28-TUMOR_peak_105330	chr9	112282878	112283006	+	14.76156	NA	Intergenic	Intergenic	-22349	NM_001145368	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_52409	chr2	43434769	43434974	+	14.76156	NA	Intergenic	Intergenic	18874	NM_006887	678	Hs.503093	NM_006887	HPRD:18319	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_22531	chr12	3232210	3232746	+	14.76042	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	45957	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_68208	chr3	50329145	50329290	+	14.75522	NA	intron (NM_006764, intron 1 of 11)	intron (NM_006764, intron 1 of 11)	809	NM_006764	7866	Hs.315177	NM_006764	HPRD:04101	IFRD2	IFNRP|SKMc15|SM15	interferon-related developmental regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_43127	chr17	66452475	66452647	+	14.75522	NA	intron (NM_017983, intron 1 of 12)	intron (NM_017983, intron 1 of 12)	1092	NM_017983	55062	Hs.463964	NM_017983	HPRD:08540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
19-PTNLD28-TUMOR_peak_15593	chr10	112065980	112066134	+	14.75380	NA	Intergenic	Intergenic	-1350	NM_005871	10285	Hs.632093	NM_005871		SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_62666	chr20	62855773	62855957	+	14.75380	NA	intron (NM_004535, intron 16 of 22)	intron (NM_004535, intron 16 of 22)	-31183	NM_018257	55251	Hs.744845	NM_018257	HPRD:12764	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_19435	chr11	66648421	66648634	+	14.75380	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	23651	NM_024036	78999	Hs.209979	NM_024036	HPRD:14310	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_60968	chr20	37246259	37246394	+	14.75380	NA	intron (NM_001164431, intron 1 of 14)	intron (NM_001164431, intron 1 of 14)	15749	NM_001164431	343578	Hs.451997	NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
19-PTNLD28-TUMOR_peak_95977	chr7	142469624	142469720	+	14.75278	NA	Intergenic	Intergenic	-9085	NR_001296	154754	Hs.449281	NR_001296	ENSG00000250606	PRSS3P2	T6|TRY6	protease, serine, 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_86586	chr6	31170527	31170870	+	14.74569	NA	non-coding (NR_026791, exon 2 of 2).3	non-coding (NR_026791, exon 2 of 2).3	5161	NR_026791	253018	Hs.659818	NR_026791	HPRD:13637	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_83116	chr5	148944385	148944550	+	14.74139	NA	Intergenic	Intergenic	-13352	NM_001892	1452	Hs.529862	NM_001892	HPRD:02739	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_14	chr1	237705	237849	+	14.74088	NA	Intergenic	Intergenic	-86115	NR_028325	100132062	Hs.722350	NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
19-PTNLD28-TUMOR_peak_72912	chr3	185973784	185974063	+	14.73824	NA	intron (NM_001080744, intron 16 of 23)	intron (NM_001080744, intron 16 of 23)	106100	NM_001080745	1608	Hs.683449	NM_001346	HPRD:03510	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase, gamma 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_95493	chr7	134274504	134274710	+	14.73824	NA	Intergenic	HERV17-int|LTR|ERV1	40758	NM_001080538	441282	Hs.729418	NM_001080538	ENSG00000227471	AKR1B15	AKR1B10L, AK1R1B7	aldo-keto reductase family 1, member B15	protein-coding
19-PTNLD28-TUMOR_peak_22778	chr12	6657252	6657554	+	14.73521	NA	intron (NM_001039670, intron 7 of 9)	intron (NM_001039670, intron 7 of 9)	7846	NM_080730	25900	Hs.15243	NM_015438	HPRD:09988	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
19-PTNLD28-TUMOR_peak_41129	chr17	34756836	34756977	+	14.73407	NA	promoter-TSS (NM_001291462)	promoter-TSS (NM_001291462)	87	NM_001291462	101060321	Hs.454716	NM_001291462		LOC101060321	-	TBC1 domain family member-like	protein-coding
19-PTNLD28-TUMOR_peak_39200	chr16	85554507	85554700	+	14.73361	NA	Intergenic	Intergenic	-90426	NM_001134473	23199	Hs.461647	NM_014615	HPRD:11066	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_69025	chr3	72536414	72536838	+	14.73361	NA	Intergenic	Intergenic	-40852	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_80171	chr5	60705469	60705667	+	14.73361	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	77468	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_2592	chr1	39196814	39196983	+	14.73361	NA	Intergenic	MER5A1|DNA|hAT-Charlie	128597	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_39120	chr16	84862908	84863102	+	14.73100	NA	intron (NM_031476, intron 1 of 14)	intron (NM_031476, intron 1 of 14)	9418	NM_031476	83716	Hs.513779	NM_031476	HPRD:13186	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_90662	chr6	170494426	170494693	+	14.73100	NA	Intergenic	Intergenic	77098	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
19-PTNLD28-TUMOR_peak_88190	chr6	64308534	64308720	+	14.73100	NA	Intergenic	LTR33C|LTR|ERVL	26710	NM_003463	7803	Hs.227777	NM_003463	HPRD:03349	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
19-PTNLD28-TUMOR_peak_44825	chr18	20008243	20008539	+	14.73100	NA	Intergenic	Intergenic	-10513	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_52498	chr2	45186164	45186323	+	14.73100	NA	Intergenic	Intergenic	17206	NM_005413	6496	Hs.567336	NM_005413	HPRD:04756	SIX3	HPE2	SIX homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_22525	chr12	3183105	3183320	+	14.72511	NA	Intergenic	Intergenic	-3309	NM_001168320	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_32146	chr14	102993961	102994135	+	14.72511	NA	Intergenic	(CAGGG)n|Simple_repeat|Simple_repeat	-11933	NR_036192	100422954		NR_036192	miRBase:MI0015837	MIR4309	-	microRNA 4309	ncRNA
19-PTNLD28-TUMOR_peak_96390	chr7	151146738	151146930	+	14.72511	NA	Intergenic	L1ME1|LINE|L1	-9735	NM_144727	155051	Hs.647104	NM_144727	HPRD:16761	CRYGN	-	crystallin, gamma N	protein-coding
19-PTNLD28-TUMOR_peak_105198	chr9	110184602	110184745	+	14.72419	NA	intron (NR_121581, intron 7 of 7)	intron (NR_121581, intron 7 of 7)	44193	NR_121581	101928720	Hs.125496	NR_121581		LINC01509	-	long intergenic non-protein coding RNA 1509	ncRNA
19-PTNLD28-TUMOR_peak_20153	chr11	76348562	76348965	+	14.72419	NA	Intergenic	Intergenic	32281	NM_005512	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_90059	chr6	151638708	151639046	+	14.72419	NA	intron (NM_005100, intron 3 of 4)	intron (NM_005100, intron 3 of 4)	-7789	NM_144497	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_24361	chr12	52817747	52818051	+	14.72419	NA	TTS (NM_004693)	TTS (NM_004693)	10211	NM_004693	9119	Hs.697046	NM_004693	HPRD:11057	KRT75	K6HF|KB18|PFB	keratin 75	protein-coding
19-PTNLD28-TUMOR_peak_96192	chr7	148906728	148906907	+	14.72419	NA	intron (NM_003575, intron 4 of 7)	MIRc|SINE|MIR	14240	NM_003575	8427	Hs.729056	NM_003575	HPRD:04549	ZNF282	HUB1	zinc finger protein 282	protein-coding
19-PTNLD28-TUMOR_peak_38009	chr16	57019608	57019732	+	14.72419	NA	Intergenic	Intergenic	23835	NM_001286085	1071	Hs.89538	NM_000078	HPRD:00325	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein, plasma	protein-coding
19-PTNLD28-TUMOR_peak_56646	chr2	161809104	161809372	+	14.71943	NA	Intergenic	Intergenic	-184228	NM_133484	10010	Hs.132257	NM_004180	HPRD:04870	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member-associated NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_82535	chr5	138973286	138973564	+	14.71943	NA	intron (NM_181838, intron 2 of 7)	AluJr4|SINE|Alu	32674	NM_181838	7322	Hs.108332	NM_003339	HPRD:04268	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
19-PTNLD28-TUMOR_peak_87223	chr6	37647724	37647973	+	14.71943	NA	intron (NM_153487, intron 1 of 16)	intron (NM_153487, intron 1 of 16)	17918	NM_153487	266727	Hs.437993	NM_153487	HPRD:14374	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
19-PTNLD28-TUMOR_peak_61196	chr20	42396380	42396582	+	14.71943	NA	Intergenic	Intergenic	-40839	NM_176791	149699	Hs.447626	NM_176791	HPRD:12778	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_58746	chr2	230353750	230354071	+	14.71943	NA	intron (NM_139072, intron 6 of 12)	intron (NM_139072, intron 6 of 12)	-217853	NM_001100818	55022	Hs.745038	NM_017933	HPRD:07944	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83818	chr5	169372887	169373215	+	14.71943	NA	intron (NM_001129891, intron 1 of 3)	intron (NM_001129891, intron 1 of 3)	34693	NM_001129891	100131897	Hs.721917	NM_001129891	ENSG00000204767	FAM196B	C5orf57	family with sequence similarity 196, member B	protein-coding
19-PTNLD28-TUMOR_peak_46061	chr18	59568679	59568854	+	14.71943	NA	Intergenic	Intergenic	-8462	NM_173557	220441	Hs.165062	NM_173557		RNF152	-	ring finger protein 152	protein-coding
19-PTNLD28-TUMOR_peak_51897	chr2	29540011	29540332	+	14.71943	NA	intron (NM_004304, intron 8 of 28)	intron (NM_004304, intron 8 of 28)	201879	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_105341	chr9	112414533	112414683	+	14.71943	NA	intron (NM_001037293, intron 1 of 6)	MSTB|LTR|ERVL-MaLR	11540	NM_001037293	114299	Hs.591908	NM_053016	HPRD:17817	PALM2	AKAP2	paralemmin 2	protein-coding
19-PTNLD28-TUMOR_peak_94901	chr7	116049346	116049483	+	14.71943	NA	Intergenic	L1PA3|LINE|L1	-90241	NM_001206747	858	Hs.212332	NM_001233	HPRD:03029	CAV2	CAV	caveolin 2	protein-coding
19-PTNLD28-TUMOR_peak_27723	chr13	31487266	31487577	+	14.71943	NA	intron (NM_032849, intron 1 of 4)	AluJr|SINE|Alu	7109	NM_032849	84935	Hs.147880	NM_032849	HPRD:07872	MEDAG	AWMS3|C13orf33|MEDA-4|MEDA4|hAWMS3	mesenteric estrogen-dependent adipogenesis	protein-coding
19-PTNLD28-TUMOR_peak_10958	chr1	234118651	234118874	+	14.71943	NA	intron (NM_173508, intron 2 of 7)	L2a|LINE|L2	78304	NM_173508	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_48272	chr19	23299660	23299889	+	14.71943	NA	promoter-TSS (NM_001277403)	promoter-TSS (NM_001277403)	-3	NM_001277403	100129543	Hs.427120	NM_001277403	ENSG00000183850	ZNF730	-	zinc finger protein 730	protein-coding
19-PTNLD28-TUMOR_peak_22060	chr11	128642811	128642950	+	14.71943	NA	exon (NM_002017, exon 4 of 9)	exon (NM_002017, exon 4 of 9)	69549	NM_000220	3758	Hs.527830	NM_000220	HPRD:08981	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_78	chr1	902085	902454	+	14.71787	NA	intron (NM_032129, intron 2 of 15)	CpG-20	392	NM_032129	84069	Hs.528691	NM_032129	HPRD:13190	PLEKHN1	-	pleckstrin homology domain containing, family N member 1	protein-coding
19-PTNLD28-TUMOR_peak_40513	chr17	19009486	19009631	+	14.71787	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	13032	NM_001291904	79999	Hs.677375	NM_024934		LOC79999	-	uncharacterized LOC79999	protein-coding
19-PTNLD28-TUMOR_peak_21730	chr11	122451347	122451489	+	14.71184	NA	Intergenic	Intergenic	-74980	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_7394	chr1	157124722	157124940	+	14.71184	NA	Intergenic	Intergenic	-16448	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_1590	chr1	25558492	25558760	+	14.71184	NA	exon (NM_015484, exon 2 of 7)	exon (NM_015484, exon 2 of 7)	387	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA-splicing factor	protein-coding
19-PTNLD28-TUMOR_peak_14070	chr10	71566949	71567188	+	14.71184	NA	intron (NM_080800, intron 1 of 37)	intron (NM_080800, intron 1 of 37)	5424	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_49323	chr19	45227256	45227477	+	14.71184	NA	Intergenic	Intergenic	-24612	NM_005178	602	Hs.31210	NM_005178	HPRD:00179	BCL3	BCL4|D19S37	B-cell CLL/lymphoma 3	protein-coding
19-PTNLD28-TUMOR_peak_48954	chr19	39353293	39353476	+	14.71184	NA	Intergenic	LTR35A|LTR|ERV1	-10405	NM_001005335	3191	Hs.644906	NM_001533	HPRD:04360	HNRNPL	HNRPL|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
19-PTNLD28-TUMOR_peak_28470	chr13	74708490	74708649	+	14.71184	NA	promoter-TSS (NM_007249)	promoter-TSS (NM_007249)	-503	NM_007249	11278	Hs.373857	NM_007249	HPRD:06336	KLF12	AP-2rep|AP2REP	Kruppel-like factor 12	protein-coding
19-PTNLD28-TUMOR_peak_25056	chr12	66272457	66272621	+	14.70979	NA	intron (NR_120478, intron 1 of 2)	intron (NR_120478, intron 1 of 2)	2819	NR_120478	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
19-PTNLD28-TUMOR_peak_41120	chr17	34591838	34591970	+	14.70979	NA	promoter-TSS (NM_032258).3	promoter-TSS (NM_032258).3	78	NM_001291462	101060321	Hs.454716	NM_001291462		LOC101060321	-	TBC1 domain family member-like	protein-coding
19-PTNLD28-TUMOR_peak_100721	chr8	126712960	126713124	+	14.70979	NA	Intergenic	Intergenic	250399	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_42176	chr17	48046348	48046581	+	14.70708	NA	promoter-TSS (NM_138281)	promoter-TSS (NM_138281)	-98	NM_138281	1748	Hs.591167	NM_001934	HPRD:03553	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_33408	chr15	45121843	45122146	+	14.70708	NA	Intergenic	Intergenic	93434	NM_001301145	140691	Hs.745248	NM_080745	HPRD:11518	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
19-PTNLD28-TUMOR_peak_29378	chr14	21539572	21539889	+	14.70698	NA	promoter-TSS (NM_001282211)	promoter-TSS (NM_001282211)	-699	NM_001282211	57447	Hs.525205	NM_016250	HPRD:17630	NDRG2	SYLD	NDRG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_43609	chr17	74965187	74965365	+	14.70264	NA	Intergenic	CpG	96547	NM_198955	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_62671	chr20	62927627	62927751	+	14.70264	NA	intron (NR_040415, intron 2 of 2)	AluSz|SINE|Alu	5951	NR_040415	140849	Hs.745565	NR_040415		LINC00266-1	C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3	long intergenic non-protein coding RNA 266-1	ncRNA
19-PTNLD28-TUMOR_peak_32161	chr14	103393765	103393935	+	14.70264	NA	intron (NM_030943, intron 3 of 11)	intron (NM_030943, intron 3 of 11)	4857	NM_030943	81693	Hs.534494	NM_030943	HPRD:09314	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_24171	chr12	50360894	50361446	+	14.70264	NA	Intergenic	Intergenic	-4463	NR_110589	101927318	Hs.668233	NR_110589		LOC101927318	-	uncharacterized LOC101927318	ncRNA
19-PTNLD28-TUMOR_peak_89868	chr6	148513082	148513228	+	14.70215	NA	Intergenic	Intergenic	-150574	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_55127	chr2	114371769	114371915	+	14.70215	NA	intron (NR_000029, intron 2 of 2)	LTR10C|LTR|ERV1	-10548	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
19-PTNLD28-TUMOR_peak_97914	chr8	28277164	28277299	+	14.70176	NA	Intergenic	Intergenic	-33254	NM_018660	55893	Hs.435535	NM_018660	HPRD:11711	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
19-PTNLD28-TUMOR_peak_29787	chr14	33179691	33179845	+	14.70176	NA	intron (NM_004274, intron 9 of 13)	intron (NM_004274, intron 9 of 13)	-228691	NM_001164749	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_26295	chr12	111087202	111087728	+	14.70176	NA	TTS (NM_001173975)	TTS (NM_001173975)	35553	NM_001173975	79600	Hs.211511	NM_024549	HPRD:08636	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
19-PTNLD28-TUMOR_peak_92513	chr7	49888130	49888322	+	14.70176	NA	intron (NM_198570, intron 3 of 3)	intron (NM_198570, intron 3 of 3)	74969	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_40372	chr17	17290481	17290618	+	14.70176	NA	Intergenic	Intergenic	83869	NM_020201	56953	Hs.513977	NM_020201	HPRD:12009	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_1961	chr1	30556827	30557028	+	14.70176	NA	Intergenic	Intergenic	-46468	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_11459	chr1	245573277	245573437	+	14.70176	NA	intron (NM_018012, intron 3 of 14)	intron (NM_018012, intron 3 of 14)	255070	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_40747	chr17	25957888	25958299	+	14.70176	NA	promoter-TSS (NM_002308)	promoter-TSS (NM_002308)	-81	NR_024043	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	lectin, galactoside-binding, soluble, 9	protein-coding
19-PTNLD28-TUMOR_peak_74372	chr4	8677195	8677411	+	14.70176	NA	Intergenic	Intergenic	82916	NM_001014448	8532	Hs.61995	NM_003652	HPRD:04376	CPZ	-	carboxypeptidase Z	protein-coding
19-PTNLD28-TUMOR_peak_68691	chr3	62169721	62169977	+	14.70176	NA	intron (NM_002841, intron 8 of 29)	intron (NM_002841, intron 8 of 29)	134773	NR_038281	100506994	Hs.656620	NR_038281	ENSG00000241472	PTPRG-AS1	-	PTPRG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1017	chr1	16121625	16122154	+	14.69574	NA	Intergenic	LTR37A|LTR|ERV1	12305	NM_001089591	440567	Hs.568229	NM_001089591		UQCRHL	-	ubiquinol-cytochrome c reductase hinge protein-like	protein-coding
19-PTNLD28-TUMOR_peak_375	chr1	6482929	6483130	+	14.69574	NA	Intergenic	Intergenic	-1819	NM_031475	83715	Hs.744222	NM_031475	HPRD:06962	ESPN	DFNB36	espin	protein-coding
19-PTNLD28-TUMOR_peak_48685	chr19	36004576	36004721	+	14.69574	NA	promoter-TSS (NM_001190348)	promoter-TSS (NM_001190348)	-88	NM_001126057	93099	Hs.417795	NM_033317	HPRD:12387	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
19-PTNLD28-TUMOR_peak_82124	chr5	131841920	131842057	+	14.69390	NA	Intergenic	L1MEf|LINE|L1	-15523	NM_002198	3659	Hs.436061	NM_002198	HPRD:00961	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_56478	chr2	158330176	158330369	+	14.69390	NA	Intergenic	Intergenic	-29668	NM_004288	9595	Hs.270	NM_004288	HPRD:09192	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_86916	chr6	34131668	34131846	+	14.69390	NA	Intergenic	Intergenic	-8358	NM_001256809	2914	Hs.429018	NM_000841	HPRD:04978	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate receptor, metabotropic 4	protein-coding
19-PTNLD28-TUMOR_peak_2253	chr1	34432483	34432702	+	14.69390	NA	intron (NM_052896, intron 3 of 69)	Tigger12|DNA|TcMar-Tigger	98035	NR_038372	402779	Hs.666207	NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22065	chr11	128754740	128754861	+	14.69390	NA	Intergenic	Intergenic	-6513	NM_000890	3762	Hs.444595	NM_000890		KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding
19-PTNLD28-TUMOR_peak_8397	chr1	177017401	177017746	+	14.69390	NA	intron (NM_001286164, intron 2 of 22)	intron (NM_001286164, intron 2 of 22)	-18992	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	ncRNA
19-PTNLD28-TUMOR_peak_70775	chr3	129874467	129874568	+	14.69390	NA	Intergenic	MER91C|DNA|hAT-Tip100	-44241	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_101890	chr9	479430	479610	+	14.69390	NA	intron (NM_001256876, intron 3 of 15)	MIRb|SINE|MIR	9226	NM_001256876	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_39895	chr17	6358756	6358992	+	14.69390	NA	exon (NM_001165966, exon 19 of 19)	exon (NM_001165966, exon 19 of 19)	11139	NM_019013	54478	Hs.592116	NM_019013	HPRD:07649	FAM64A	CATS|RCS1	family with sequence similarity 64, member A	protein-coding
19-PTNLD28-TUMOR_peak_296	chr1	3605045	3605237	+	14.69390	NA	intron (NM_001204188, intron 3 of 11)	intron (NM_001204188, intron 3 of 11)	-2095	NM_001204190	7161	Hs.192132	NM_005427	HPRD:03587	TP73	P73	tumor protein p73	protein-coding
19-PTNLD28-TUMOR_peak_66856	chr3	14832863	14833281	+	14.69390	NA	Intergenic	Intergenic	-27397	NM_152536	152273	Hs.412406	NM_152536	HPRD:13322	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_90619	chr6	169337158	169337440	+	14.69390	NA	Intergenic	Intergenic	316910	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_106014	chr9	126511978	126512152	+	14.69390	NA	intron (NM_020946, intron 5 of 21)	intron (NM_020946, intron 5 of 21)	180352	NM_020946	57706	Hs.744995	NM_020946	HPRD:17221	DENND1A	FAM31A|KIAA1608	DENN/MADD domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_38826	chr16	77608700	77609272	+	14.69390	NA	Intergenic	Intergenic	-139975	NM_199355	170692	Hs.188746	NM_139054	HPRD:06333	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif, 18	protein-coding
19-PTNLD28-TUMOR_peak_40482	chr17	18657802	18658112	+	14.69390	NA	intron (NR_051988, intron 5 of 13)	intron (NR_051988, intron 5 of 13)	10631	NM_001267586	10517	Hs.592128	NM_031456	HPRD:06851	FBXW10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD repeat domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_76730	chr4	118006288	118006819	+	14.69390	NA	5' UTR (NM_152402, exon 1 of 1)	5' UTR (NM_152402, exon 1 of 1)	183	NM_152402	133022	Hs.570737	NM_152402	HPRD:11643	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_68402	chr3	53404747	53405344	+	14.69390	NA	Intergenic	L1PA2|LINE|L1	-23391	NM_001290207	55802	Hs.476353	NM_018403	HPRD:06113	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
19-PTNLD28-TUMOR_peak_104876	chr9	100348761	100348903	+	14.69390	NA	intron (NM_001166116, intron 8 of 9)	L1PA2|LINE|L1	-46873	NM_002486	4686	Hs.595669	NM_002486	HPRD:02717	NCBP1	CBP80|NCBP|Sto1	nuclear cap binding protein subunit 1, 80kDa	protein-coding
19-PTNLD28-TUMOR_peak_92661	chr7	55620436	55620610	+	14.69390	NA	promoter-TSS (NM_001284282)	promoter-TSS (NM_001284282)	-57	NM_001284282	81552	Hs.488307	NM_030796	HPRD:08526	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20297	chr11	79074359	79074573	+	14.68837	NA	intron (NM_001098816, intron 1 of 33)	intron (NM_001098816, intron 1 of 33)	38687	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_63346	chr21	36419560	36419717	+	14.68837	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	1957	NM_001754	861	Hs.149261	NM_001754	HPRD:01043	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_44222	chr18	697841	698088	+	14.68837	NA	intron (NM_202758, intron 2 of 14)	AluJb|SINE|Alu	14553	NM_202758	55556	Hs.658550	NM_017512	ENSG00000132199	ENOSF1	HSRTSBETA|RTS|TYMSAS	enolase superfamily member 1	protein-coding
19-PTNLD28-TUMOR_peak_39919	chr17	6544045	6544463	+	14.68837	NA	promoter-TSS (NM_014804)	promoter-TSS (NM_014804)	-7	NM_014804	9851	Hs.28070	NM_014804	HPRD:11106	KIAA0753	-	KIAA0753	protein-coding
19-PTNLD28-TUMOR_peak_66705	chr3	12989403	12989560	+	14.68837	NA	intron (NM_001134382, intron 1 of 14)	intron (NM_001134382, intron 1 of 14)	19717	NM_014869	9922	Hs.475506	NM_014869	HPRD:11052	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
19-PTNLD28-TUMOR_peak_27177	chr12	130613114	130613274	+	14.67863	NA	Intergenic	Intergenic	33029	NR_033834	440119	Hs.288262	NR_033834	ENSG00000250208	FZD10-AS1	-	FZD10 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_103078	chr9	38807930	38808415	+	14.67655	NA	Intergenic	ERVL-B4-int|LTR|ERVL	187087	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_47234	chr19	10697865	10698066	+	14.67655	NA	promoter-TSS (NM_005498)	promoter-TSS (NM_005498)	26	NM_005498	10053	Hs.18894	NM_005498	HPRD:06296	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor-related protein complex 1, mu 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_21430	chr11	117171067	117171380	+	14.67655	NA	intron (NM_138972, intron 1 of 8)	intron (NM_138972, intron 1 of 8)	-4837	NM_001207049	23621	Hs.504003	NM_012104	HPRD:07255	BACE1	ASP2|BACE|HSPC104	beta-site APP-cleaving enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_36886	chr16	24087593	24088078	+	14.67655	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-179039	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_53417	chr2	71772895	71773051	+	14.67655	NA	intron (NM_001130987, intron 17 of 55)	L1ME4a|LINE|L1	79141	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_65178	chr22	32366216	32366342	+	14.67655	NA	Intergenic	Intergenic	-24943	NM_015372	25775	Hs.627602	NM_015372	ENSG00000128254	C22orf24	HSN44A4A	chromosome 22 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_19237	chr11	65047329	65047502	+	14.67655	NA	intron (NM_002689, intron 7 of 17)	intron (NM_002689, intron 7 of 17)	17983	NM_002689	23649	Hs.201897	NM_002689		POLA2	-	polymerase (DNA directed), alpha 2, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_76041	chr4	84279711	84279829	+	14.67655	NA	Intergenic	Intergenic	-23464	NM_006665	10855	Hs.44227	NM_006665	HPRD:05286	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
19-PTNLD28-TUMOR_peak_63554	chr21	40372485	40372762	+	14.67655	NA	Intergenic	Intergenic	-22923	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LOC101928435	-	uncharacterized LOC101928435	ncRNA
19-PTNLD28-TUMOR_peak_9766	chr1	206763482	206763616	+	14.67655	NA	TTS (NM_182665)	TTS (NM_182665)	22355	NM_006893	1939	Hs.497581	NM_006893	HPRD:01057	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
19-PTNLD28-TUMOR_peak_75924	chr4	81187594	81187917	+	14.67655	NA	promoter-TSS (NM_004464)	promoter-TSS (NM_004464)	13	NM_033143	2250	Hs.37055	NM_004464	HPRD:01307	FGF5	HBGF-5|Smag-82|TCMGLY	fibroblast growth factor 5	protein-coding
19-PTNLD28-TUMOR_peak_21759	chr11	122753451	122753667	+	14.67655	NA	5' UTR (NM_199124, exon 1 of 4)	5' UTR (NM_199124, exon 1 of 4)	323	NM_199124	79864	Hs.164705	NM_024806	HPRD:08035	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
19-PTNLD28-TUMOR_peak_73967	chr4	3313649	3313810	+	14.67655	NA	Intergenic	MIR3|SINE|MIR	-2145	NM_198229	6002	Hs.527061	NM_002926	HPRD:03943	RGS12	-	regulator of G-protein signaling 12	protein-coding
19-PTNLD28-TUMOR_peak_35826	chr16	2601365	2601591	+	14.67655	NA	intron (NM_001261816, intron 1 of 11)	intron (NM_001261816, intron 1 of 11)	13513	NM_002613	5170	Hs.459691	NM_002613	HPRD:05556	PDPK1	PDK1|PDPK2|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_26024	chr12	106527546	106527709	+	14.67478	NA	intron (NM_014840, intron 1 of 6)	L2b|LINE|L2	6184	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_1835	chr1	28496539	28496867	+	14.67478	NA	intron (NM_001164722, intron 1 of 1)	L2b|LINE|L2	6752	NM_000952	5724	Hs.77542	NM_000952	HPRD:01422	PTAFR	PAFR	platelet-activating factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_34124	chr15	67418026	67418164	+	14.67478	NA	promoter-TSS (NM_001145102)	promoter-TSS (NM_001145102)	41	NM_001145102	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_95571	chr7	135401575	135401742	+	14.67478	NA	intron (NM_012450, intron 2 of 15)	L3|LINE|CR1	11275	NM_012450	26266	Hs.200022	NM_012450	HPRD:10372	SLC13A4	SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_40564	chr17	19411219	19411523	+	14.67478	NA	Intergenic	CpG	-25796	NM_018242	55244	Hs.232054	NM_018242	HPRD:07703	SLC47A1	MATE1	solute carrier family 47 (multidrug and toxin extrusion), member 1	protein-coding
19-PTNLD28-TUMOR_peak_67631	chr3	39620971	39621251	+	14.67478	NA	Intergenic	HERVH-int|LTR|ERV1	77554	NM_001278323	4336	Hs.121333	NM_182935	HPRD:02973	MOBP	-	myelin-associated oligodendrocyte basic protein	protein-coding
19-PTNLD28-TUMOR_peak_643	chr1	9884265	9884417	+	14.67476	NA	5' UTR (NM_014944, exon 1 of 18)	5' UTR (NM_014944, exon 1 of 18)	209	NM_001009566	22883	Hs.29665	NM_014944	HPRD:10837	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
19-PTNLD28-TUMOR_peak_60754	chr20	34637436	34637562	+	14.67352	NA	non-coding (NR_027451, exon 1 of 1)	non-coding (NR_027451, exon 1 of 1)	1383	NR_027451	647979	Hs.743232	NR_027451	ENSG00000260032	LINC00657	-	long intergenic non-protein coding RNA 657	ncRNA
19-PTNLD28-TUMOR_peak_62873	chr21	18827832	18827958	+	14.67352	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	16687	NR_037585	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_26695	chr12	121106922	121107250	+	14.67020	NA	Intergenic	Intergenic	-17863	NM_014730	9761	Hs.744910	NM_014730	HPRD:13781	MLEC	KIAA0152	malectin	protein-coding
19-PTNLD28-TUMOR_peak_82232	chr5	133772280	133772519	+	14.66902	NA	Intergenic	Intergenic	-1661	NR_105044	102546229		NR_105044		LOC102546229	-	uncharacterized LOC102546229	ncRNA
19-PTNLD28-TUMOR_peak_231	chr1	2344359	2344514	+	14.66430	NA	promoter-TSS (NM_002617)	promoter-TSS (NM_002617)	-426	NM_153818	5192	Hs.732228	NM_002617	HPRD:04175	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
19-PTNLD28-TUMOR_peak_32574	chr15	23207797	23208785	+	14.66422	NA	promoter-TSS (NR_003521)	promoter-TSS (NR_003521)	66	NR_003521	339005	Hs.212670	NR_003521	ENSG00000187667	WHAMMP3	WHAMML1|WHDC1L1	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_92400	chr7	46694607	46694790	+	14.66132	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-733827	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_62495	chr20	60961631	60961768	+	14.65192	NA	promoter-TSS (NM_001024)	promoter-TSS (NM_001024)	-422	NM_001024	6227	Hs.190968	NM_001024	HPRD:01605	RPS21	HLDF|S21	ribosomal protein S21	protein-coding
19-PTNLD28-TUMOR_peak_109865	chrX	152678119	152678277	+	14.65044	NA	Intergenic	L2a|LINE|L2	-5583	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_2484	chr1	37454687	37455143	+	14.64551	NA	intron (NM_000831, intron 1 of 15)	intron (NM_000831, intron 1 of 15)	44929	NM_000831	2899	Hs.128848	NM_000831	HPRD:00691	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate receptor, ionotropic, kainate 3	protein-coding
19-PTNLD28-TUMOR_peak_62517	chr20	61293852	61294043	+	14.64312	NA	TTS (NR_024470)	TTS (NR_024470)	4026	NR_024470	100127888	Hs.671273	NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52765	chr2	53161512	53161936	+	14.64312	NA	Intergenic	Intergenic	-833205	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_58239	chr2	214341326	214341703	+	14.64312	NA	intron (NR_047659, intron 11 of 17)	LTR27B|LTR|ERV1	192411	NR_047659	79582	Hs.743365	NM_024532	HPRD:18089	SPAG16	PF20|WDR29	sperm associated antigen 16	protein-coding
19-PTNLD28-TUMOR_peak_68228	chr3	50473612	50473800	+	14.64312	NA	intron (NM_001005505, intron 2 of 37)	intron (NM_001005505, intron 2 of 37)	67322	NM_001174051	9254	Hs.476273	NM_006030	HPRD:06154	CACNA2D2	CACNA2D	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_105153	chr9	109245096	109245308	+	14.64312	NA	Intergenic	Intergenic	-118007	NR_107048	102465995		NR_107048		MIR8081	hsa-mir-8081	microRNA 8081	ncRNA
19-PTNLD28-TUMOR_peak_1485	chr1	24083293	24083437	+	14.64312	NA	intron (NM_003198, intron 9 of 10)	intron (NM_003198, intron 9 of 10)	13509	NM_003198	6924	Hs.15535	NM_003198	HPRD:02873	TCEB3	EloA|SIII|SIII p110|TCEB3A	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	protein-coding
19-PTNLD28-TUMOR_peak_109604	chrX	136836600	136836783	+	14.64312	NA	Intergenic	Intergenic	188345	NM_003413	7547	Hs.111227	NM_003413	HPRD:02225	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
19-PTNLD28-TUMOR_peak_77850	chr4	159778169	159778266	+	14.64312	NA	intron (NM_020840, intron 8 of 16)	intron (NM_020840, intron 8 of 16)	88035	NM_020840	57600	Hs.652441	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_9852	chr1	208374682	208374890	+	14.64312	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	42879	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_4847	chr1	92048213	92048409	+	14.64312	NA	Intergenic	Intergenic	81646	NM_001134420	8317	Hs.533573	NM_003503	HPRD:10345	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
19-PTNLD28-TUMOR_peak_4307	chr1	70353721	70353885	+	14.64312	NA	intron (NM_020794, intron 5 of 24)	L1PA2|LINE|L1	-31202	NR_023916	5301	Hs.654711	NR_023916		PIN1P1	PIN1L	peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_96124	chr7	144712760	144712949	+	14.64312	NA	Intergenic	Intergenic	-179708	NM_001042482	27010	Hs.660232	NM_022445	HPRD:06967	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_9162	chr1	200901010	200901199	+	14.64312	NA	Intergenic	Intergenic	37155	NM_001142569	55765	Hs.518997	NM_018265	HPRD:07712	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_27685	chr13	30982452	30982859	+	14.64312	NA	Intergenic	CpG	13726	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
19-PTNLD28-TUMOR_peak_20870	chr11	102483803	102483977	+	14.64312	NA	intron (NM_004771, intron 2 of 9)	intron (NM_004771, intron 2 of 9)	12173	NM_004771	9313	Hs.591946	NM_004771	HPRD:05218	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
19-PTNLD28-TUMOR_peak_33664	chr15	56332781	56333130	+	14.64312	NA	Intergenic	Intergenic	-47011	NM_006154	4734	Hs.1565	NM_006154	HPRD:03786	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_79903	chr5	54300666	54300875	+	14.64312	NA	Intergenic	Intergenic	19227	NR_104662	102467081		NR_104662		LOC102467081	-	uncharacterized LOC102467081	ncRNA
19-PTNLD28-TUMOR_peak_34935	chr15	84167616	84167832	+	14.64312	NA	intron (NM_001301109, intron 4 of 11)	intron (NM_001301109, intron 4 of 11)	51633	NR_026799	6457	Hs.270055	NM_003027	HPRD:04528	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_52476	chr2	44519730	44519954	+	14.64310	NA	intron (NM_000341, intron 4 of 9)	L2c|LINE|L2	17245	NM_000341	6519	Hs.112916	NM_000341		SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 (amino acid transporter heavy chain), member 1	protein-coding
19-PTNLD28-TUMOR_peak_3280	chr1	47575203	47575382	+	14.64310	NA	intron (NM_178134, intron 9 of 11)	intron (NM_178134, intron 9 of 11)	-27815	NM_001010969	284541	Hs.726474	NM_001010969		CYP4A22	-	cytochrome P450, family 4, subfamily A, polypeptide 22	protein-coding
19-PTNLD28-TUMOR_peak_108656	chrX	69654278	69654682	+	14.64310	NA	Intergenic	CpG	-10225	NM_021120	1741	Hs.721586	NM_020730	HPRD:02177	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR	discs, large homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_49962	chr19	50964556	50964714	+	14.64310	NA	intron (NM_004533, intron 24 of 27)	L1MB5|LINE|L1	-15099	NM_175063	284361	Hs.448941	NM_175063	HPRD:14153	EMC10	C19orf63|HSM1|HSS1	ER membrane protein complex subunit 10	protein-coding
19-PTNLD28-TUMOR_peak_95928	chr7	142003531	142003636	+	14.64310	NA	Intergenic	Intergenic	-31515	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66041	chr22	47332335	47332546	+	14.64310	NA	intron (NR_104292, intron 10 of 13)	intron (NR_104292, intron 10 of 13)	-20502	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9583	chr1	205042121	205042281	+	14.64310	NA	exon (NM_005076, exon 22 of 23)	exon (NM_005076, exon 22 of 23)	11387	NM_203376	388730	Hs.146928	NM_203376	HPRD:14205	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
19-PTNLD28-TUMOR_peak_3590	chr1	54147842	54148012	+	14.64310	NA	intron (NM_147193, intron 1 of 9)	L2b|LINE|L2	51950	NM_147193	148979	Hs.306691	NM_147193	HPRD:13581	GLIS1	-	GLIS family zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_96636	chr7	155391560	155391686	+	14.64159	NA	Intergenic	Intergenic	-45580	NM_053043	155435	Hs.591815	NM_053043	HPRD:17310	RBM33	PRR8	RNA binding motif protein 33	protein-coding
19-PTNLD28-TUMOR_peak_28746	chr13	97646400	97647172	+	14.64159	NA	promoter-TSS (NM_080818)	promoter-TSS (NM_080818)	-182	NM_080818	27199	Hs.352218	NM_080818	HPRD:06082	OXGR1	GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_42729	chr17	59433853	59433995	+	14.64159	NA	intron (NM_017679, intron 22 of 23)	intron (NM_017679, intron 22 of 23)	43043	NR_125749	103689912	Hs.410998	NR_125749		TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87284	chr6	39070144	39070303	+	14.64159	NA	Intergenic	Intergenic	12642	NM_018322	55776	Hs.58382	NM_018322	HPRD:12892	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_56431	chr2	157055775	157056486	+	14.64159	NA	intron (NR_110250, intron 1 of 3)	intron (NR_110250, intron 1 of 3)	55313	NR_110249	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_4606	chr1	85690847	85690980	+	14.64159	NA	Intergenic	Intergenic	-24185	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_75707	chr4	76052062	76052278	+	14.64159	NA	Intergenic	L1PA2|LINE|L1	-156598	NR_121617	100507388	Hs.570765	NR_121617	ENSG00000249717	LOC100507388	-	uncharacterized LOC100507388	ncRNA
19-PTNLD28-TUMOR_peak_103243	chr9	42957615	42957785	+	14.64159	NA	Intergenic	Intergenic	50697	NR_121572	100132541	Hs.646257	NR_121572		GXYLT1P3	-	glucoside xylosyltransferase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_86703	chr6	32043670	32043815	+	14.63986	NA	intron (NM_019105, intron 11 of 43)	intron (NM_019105, intron 11 of 43)	-29837	NM_032470	7148	Hs.485104	NM_019105	HPRD:02993	TNXB	EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS	tenascin XB	protein-coding
19-PTNLD28-TUMOR_peak_11059	chr1	235134256	235134469	+	14.63755	NA	Intergenic	Intergenic	156890	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_2404	chr1	36599213	36599442	+	14.63702	NA	Intergenic	Intergenic	-8642	NM_005202	1296	Hs.353001	NM_005202	HPRD:08347	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen, type VIII, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_52284	chr2	39951945	39952365	+	14.63572	NA	Intergenic	Intergenic	54261	NM_025264	80745	Hs.468254	NM_025264	HPRD:15506	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_60702	chr20	33891757	33891928	+	14.63572	NA	exon (NM_001184977, exon 8 of 8)	exon (NM_001184977, exon 8 of 8)	-11617	NM_178468	128876	Hs.592149	NM_178468	HPRD:12743	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83, member C	protein-coding
19-PTNLD28-TUMOR_peak_66507	chr3	10049140	10049299	+	14.63131	NA	TTS (NR_103821)	TTS (NR_103821)	3560	NM_001008737	401052	Hs.662766	NM_001008737		LOC401052	-	uncharacterized LOC401052	protein-coding
19-PTNLD28-TUMOR_peak_54188	chr2	95696356	95696502	+	14.63020	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	5029	NM_022438	4118	Hs.80395	NM_002371	HPRD:01789	MAL	-	mal, T-cell differentiation protein	protein-coding
19-PTNLD28-TUMOR_peak_39308	chr16	87900342	87900594	+	14.62906	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	2632	NM_003486	8140	Hs.513797	NM_003486	HPRD:02552	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	solute carrier family 7 (amino acid transporter light chain, L system), member 5	protein-coding
19-PTNLD28-TUMOR_peak_86692	chr6	31960642	31960857	+	14.62859	NA	intron (NM_001002029, intron 15 of 40)	G-rich|Low_complexity|Low_complexity	10915	NM_001002029	721	Hs.534847	NM_001002029	HPRD:00402	C4B	C4B1|C4B12|C4B2|C4B3|C4B5|C4BD|C4B_2|C4F|CH|CO4|CPAMD3	complement component 4B (Chido blood group)	protein-coding
19-PTNLD28-TUMOR_peak_78206	chr4	183837991	183838255	+	14.62859	NA	intron (NM_001921, intron 1 of 5)	CpG	507	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_86697	chr6	31993380	31993595	+	14.62859	NA	intron (NM_001002029, intron 15 of 40).2	G-rich|Low_complexity|Low_complexity	10915	NM_007293	720	Hs.534847	NM_007293	HPRD:00401	C4A	C4|C4A2|C4A3|C4A4|C4A6|C4AD|C4S|CO4|CPAMD2|RG	complement component 4A (Rodgers blood group)	protein-coding
19-PTNLD28-TUMOR_peak_41635	chr17	41622050	41622220	+	14.62859	NA	intron (NM_001261437, intron 3 of 11)	intron (NM_001261437, intron 3 of 11)	1170	NM_001986	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_98427	chr8	41753515	41753652	+	14.62680	NA	intron (NM_001142446, intron 1 of 42)	CpG	697	NM_001142446	286	Hs.654438	NM_000037	HPRD:01693	ANK1	ANK|SPH1|SPH2	ankyrin 1, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_28015	chr13	42999412	42999620	+	14.62680	NA	Intergenic	L1HS|LINE|L1	-137356	NM_033012	8600	Hs.333791	NM_003701	HPRD:04031	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TRANCE|hRANKL2|sOdf	tumor necrosis factor (ligand) superfamily, member 11	protein-coding
19-PTNLD28-TUMOR_peak_105697	chr9	119139826	119139956	+	14.62680	NA	exon (NM_002581, exon 20 of 22)	exon (NM_002581, exon 20 of 22)	22994	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82874	chr5	142534745	142534928	+	14.62680	NA	intron (NM_015071, intron 20 of 22)	intron (NM_015071, intron 20 of 22)	248418	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_31084	chr14	70340702	70340915	+	14.62680	NA	Intergenic	Intergenic	-5306	NM_001034852	64093	Hs.497349	NM_022137	HPRD:12244	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding
19-PTNLD28-TUMOR_peak_79558	chr5	38175006	38175166	+	14.62680	NA	Intergenic	L1PA3|LINE|L1	-83425	NM_001205301	133584	Hs.20103	NM_152403	HPRD:13433	EGFLAM	AGRINL|AGRNL|PIKA	EGF-like, fibronectin type III and laminin G domains	protein-coding
19-PTNLD28-TUMOR_peak_49825	chr19	49769736	49769919	+	14.62680	NA	Intergenic	LTR13|LTR|ERVK	42298	NR_036209	100422979		NR_036209		MIR4324	-	microRNA 4324	ncRNA
19-PTNLD28-TUMOR_peak_100187	chr8	117256129	117256361	+	14.62680	NA	intron (NR_046215, intron 4 of 13)	intron (NR_046215, intron 4 of 13)	81052	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
19-PTNLD28-TUMOR_peak_36021	chr16	4556527	4556661	+	14.62680	NA	intron (NM_001286270, intron 4 of 7)	intron (NM_001286270, intron 4 of 7)	10735	NM_001127205	3163	Hs.284279	NM_002134	HPRD:00783	HMOX2	HO-2	heme oxygenase (decycling) 2	protein-coding
19-PTNLD28-TUMOR_peak_52650	chr2	47432744	47432963	+	14.62680	NA	intron (NR_110208, intron 3 of 4)	intron (NR_110208, intron 3 of 4)	-29113	NM_001743	805	Hs.468442	NM_001743	HPRD:00242	CALM2	CAMII|PHKD|PHKD2	calmodulin 2 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_31211	chr14	73652177	73652307	+	14.62680	NA	intron (NM_000021, intron 5 of 11)	SVA_F|Other|Other	49099	NM_007318	5663	Hs.3260	NM_000021	HPRD:00087	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
19-PTNLD28-TUMOR_peak_55238	chr2	119476496	119476878	+	14.62583	NA	Intergenic	Intergenic	-116145	NR_110272	101927709	Hs.274529	NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
19-PTNLD28-TUMOR_peak_54270	chr2	96804326	96804664	+	14.62583	NA	promoter-TSS (NM_001002036)	promoter-TSS (NM_001002036)	-320	NM_001002036	431705	Hs.447993	NM_001002036	HPRD:16396	ASTL	SAS1B	astacin-like metallo-endopeptidase (M12 family)	protein-coding
19-PTNLD28-TUMOR_peak_77259	chr4	141110201	141110378	+	14.62583	NA	Intergenic	Intergenic	-35056	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_66733	chr3	13460974	13461896	+	14.62583	NA	intron (NM_024923, intron 1 of 39)	CpG	384	NM_024923	23225	Hs.475525	NM_024923	HPRD:06368	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
19-PTNLD28-TUMOR_peak_107084	chrUn_gl000218	58292	58409	+	14.62583	NA	intron (NR_037871, intron 2 of 4)	CpG	-3301	NR_027420	389834	Hs.720653	NR_027420		LOC389834	-	ankyrin repeat domain 57 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_104869	chr9	100305918	100306128	+	14.62583	NA	intron (NM_001166116, intron 2 of 9)	intron (NM_001166116, intron 2 of 9)	42102	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_99527	chr8	94918624	94918858	+	14.62583	NA	Intergenic	Intergenic	9606	NR_039602	100616169		NR_039602	miRBase:MI0003840	MIR378D2	-	microRNA 378d-2	ncRNA
19-PTNLD28-TUMOR_peak_16105	chr10	125853055	125853252	+	14.62583	NA	promoter-TSS (NM_001270764)	promoter-TSS (NM_001270764)	-30	NM_001270765	51363	Hs.287537	NM_014863	HPRD:12203	CHST15	BRAG|GALNAC4S-6ST	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_86845	chr6	33454132	33454486	+	14.62583	NA	Intergenic	SVA_D|Other|Other	31953	NM_152735	221504	Hs.591805	NM_152735	HPRD:15695	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_100700	chr8	126581693	126582357	+	14.62295	NA	Intergenic	Intergenic	137574	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_93307	chr7	73976162	73976511	+	14.62295	NA	intron (NM_005685, intron 22 of 26)	intron (NM_005685, intron 22 of 26)	-95655	NM_032999	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_6956	chr1	153438335	153438451	+	14.62295	NA	Intergenic	Intergenic	-5256	NM_002963	6278	Hs.112408	NM_002963	HPRD:02645	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
19-PTNLD28-TUMOR_peak_2716	chr1	40544338	40544517	+	14.62295	NA	intron (NM_001142604, intron 3 of 5)	intron (NM_001142604, intron 3 of 5)	18715	NM_001142604	5538	Hs.3873	NM_000310	HPRD:07203	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_87904	chr6	49764936	49765185	+	14.62295	NA	Intergenic	L1PA3|LINE|L1	-10007	NM_138733	5232	Hs.367727	NM_138733	HPRD:01393	PGK2	HEL-S-272|PGKB|PGKPS|dJ417L20.2	phosphoglycerate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_24574	chr12	54812843	54813109	+	14.62295	NA	promoter-TSS (NM_002205)	promoter-TSS (NM_002205)	74	NM_002205	3678	Hs.505654	NM_002205	HPRD:00627	ITGA5	CD49e|FNRA|VLA5A	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_18062	chr11	35547211	35547388	+	14.62295	NA	5' UTR (NM_015430, exon 1 of 12)	5' UTR (NM_015430, exon 1 of 12)	280	NM_015430	25891	Hs.55044	NM_015430	HPRD:07104	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
19-PTNLD28-TUMOR_peak_32267	chr14	104582648	104582826	+	14.62295	NA	Intergenic	Intergenic	-1005	NR_029620	406986		NR_029620	miRBase:MI0000283	MIR203A	MIR203|MIRN203|hsa-mir-203a|miR-203|miRNA203	microRNA 203a	ncRNA
19-PTNLD28-TUMOR_peak_40782	chr17	26879586	26879793	+	14.62295	NA	promoter-TSS (NM_005148)	promoter-TSS (NM_005148)	-43	NM_005148	9094	Hs.410455	NM_005148	HPRD:04927	UNC119	HRG4|IMD13|POC7|POC7A	unc-119 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_80327	chr5	66124529	66124688	+	14.62295	NA	promoter-TSS (NM_015183)	promoter-TSS (NM_015183)	4	NM_015183	375449	Hs.595458	NM_015183	HPRD:14195	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
19-PTNLD28-TUMOR_peak_72745	chr3	183904155	183904438	+	14.62100	NA	exon (NM_018358, exon 2 of 21)	exon (NM_018358, exon 2 of 21)	433	NM_018358	55324	Hs.361323	NM_018358	HPRD:12404	ABCF3	EST201864	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding
19-PTNLD28-TUMOR_peak_73857	chr4	1728001	1728203	+	14.62100	NA	intron (NM_006342, intron 3 of 15)	intron (NM_006342, intron 3 of 15)	4885	NM_006342	10460	Hs.104019	NM_006342	HPRD:05601	TACC3	ERIC-1|ERIC1	transforming, acidic coiled-coil containing protein 3	protein-coding
19-PTNLD28-TUMOR_peak_65977	chr22	46480841	46481075	+	14.61303	NA	promoter-TSS (NR_027033)	promoter-TSS (NR_027033)	-919	NR_027033	400931	Hs.235838	NM_207477	HPRD:16929	MIRLET7BHG	linc-Ppara	MIRLET7B host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82609	chr5	139624189	139624356	+	14.60644	NA	TTS (NM_002622)	TTS (NM_002622)	58417	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_9535	chr1	204463184	204463535	+	14.60644	NA	Intergenic	CpG	-3885	NM_002646	5287	Hs.497487	NM_002646	HPRD:04160	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_6224	chr1	144811725	144811857	+	14.59832	NA	intron (NM_001037675, intron 7 of 20)	intron (NM_001037675, intron 7 of 20)	120574	NM_001002811	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_78628	chr5	993788	993924	+	14.59832	NA	intron (NR_104614, intron 1 of 1)	intron (NR_104614, intron 1 of 1)	3599	NR_104614	100506688	Hs.532063	NM_001242737		LOC100506688	-	uncharacterized LOC100506688	ncRNA
19-PTNLD28-TUMOR_peak_86135	chr6	26322303	26322636	+	14.59832	NA	Intergenic	Intergenic	-36742	NM_003543	8365	Hs.591790	NM_003543	HPRD:11919	HIST1H4H	H4/h|H4FH	histone cluster 1, H4h	protein-coding
19-PTNLD28-TUMOR_peak_60859	chr20	35771256	35771408	+	14.59832	NA	intron (NM_213632, intron 9 of 11)	intron (NM_213632, intron 9 of 11)	-36124	NM_002951	6185	Hs.370895	NM_002951	HPRD:01609	RPN2	RIBIIR|RPN-II|RPNII|SWP1	ribophorin II	protein-coding
19-PTNLD28-TUMOR_peak_33278	chr15	42186155	42186456	+	14.59454	NA	promoter-TSS (NM_016642)	promoter-TSS (NM_016642)	-30	NM_016642	51332	Hs.709819	NM_016642	HPRD:10438	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin, beta, non-erythrocytic 5	protein-coding
19-PTNLD28-TUMOR_peak_47105	chr19	9119549	9119789	+	14.59056	NA	Intergenic	Intergenic	-27651	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	mucin 16, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_93529	chr7	76595196	76595341	+	14.59054	NA	Intergenic	Intergenic	-14871	NR_023383	441263	Hs.675888	NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11|PMS2P11|PMSR6	DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene	pseudo
19-PTNLD28-TUMOR_peak_3701	chr1	55529875	55530362	+	14.58865	NA	non-coding (NR_110451, exon 10 of 10)	non-coding (NR_110451, exon 10 of 10)	24223	NR_110451	255738	Hs.18844	NM_174936	HPRD:07080	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
19-PTNLD28-TUMOR_peak_41437	chr17	39656350	39656584	+	14.58727	NA	TTS (NM_002274)	TTS (NM_002274)	5398	NM_002274	3860	Hs.654550	NM_002274	HPRD:01016	KRT13	CK13|K13|WSN2	keratin 13	protein-coding
19-PTNLD28-TUMOR_peak_71230	chr3	139197190	139197399	+	14.58727	NA	intron (NR_121609, intron 3 of 4)	L1MEd|LINE|L1	-1942	NM_004164	5948	Hs.655516	NM_004164	HPRD:07184	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2, cellular	protein-coding
19-PTNLD28-TUMOR_peak_89537	chr6	134499546	134499850	+	14.58727	NA	promoter-TSS (NM_001143677)	promoter-TSS (NM_001143677)	-688	NM_001143677	6446	Hs.510078	NM_005627	HPRD:04264	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_22953	chr12	8811100	8811249	+	14.58727	NA	intron (NM_001297710, intron 2 of 7)	intron (NM_001297710, intron 2 of 7)	4310	NM_001297709	8076	Hs.512842	NM_003480	HPRD:03063	MFAP5	MAGP-2|MAGP2|MFAP-5|MP25	microfibrillar associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_1838	chr1	28523610	28523763	+	14.58727	NA	Intergenic	Intergenic	-3239	NM_001164722	5724	Hs.77542	NM_000952	HPRD:01422	PTAFR	PAFR	platelet-activating factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_62652	chr20	62689243	62689384	+	14.58727	NA	intron (NM_198723, intron 1 of 10)	intron (NM_198723, intron 1 of 10)	874	NM_198723	6919	Hs.505004	NM_003195	HPRD:16069	TCEA2	TFIIS	transcription elongation factor A (SII), 2	protein-coding
19-PTNLD28-TUMOR_peak_109800	chrX	150999471	150999724	+	14.58727	NA	Intergenic	Intergenic	-81764	NM_001011548	4103	Hs.37107	NM_002362	HPRD:02167	MAGEA4	CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B	melanoma antigen family A, 4	protein-coding
19-PTNLD28-TUMOR_peak_24619	chr12	56074938	56075162	+	14.58727	NA	promoter-TSS (NM_152637)	promoter-TSS (NM_152637)	-280	NM_152637	196410	Hs.51483	NM_152637	HPRD:14458	METTL7B	ALDI	methyltransferase like 7B	protein-coding
19-PTNLD28-TUMOR_peak_92419	chr7	47367770	47367931	+	14.58212	NA	intron (NM_022748, intron 20 of 30)	intron (NM_022748, intron 20 of 30)	253892	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_35464	chr15	100337518	100337695	+	14.58212	NA	intron (NR_003260, intron 4 of 4)	intron (NR_003260, intron 4 of 4)	9526	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_44861	chr18	20428578	20428727	+	14.58212	NA	Intergenic	Intergenic	-61852	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_1170	chr1	17852917	17853074	+	14.58212	NA	Intergenic	MIRb|SINE|MIR	-13335	NM_018125	55160	Hs.443460	NM_018125	HPRD:07679	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
19-PTNLD28-TUMOR_peak_85394	chr6	12008837	12009025	+	14.58098	NA	Intergenic	Intergenic	-3793	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_67360	chr3	30730744	30730899	+	14.57683	NA	intron (NM_001024847, intron 7 of 7)	intron (NM_001024847, intron 7 of 7)	82827	NM_003242	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_34134	chr15	67813261	67813800	+	14.57683	NA	promoter-TSS (NR_040056)	promoter-TSS (NR_040056)	8	NM_001143936	145853	Hs.438385	NM_001143936	ENSG00000189227	C15orf61	-	chromosome 15 open reading frame 61	protein-coding
19-PTNLD28-TUMOR_peak_34526	chr15	75248588	75249220	+	14.57683	NA	exon (NM_017793, exon 1 of 1)	exon (NM_017793, exon 1 of 1)	871	NM_017793	54913	Hs.8562	NM_017793		RPP25	-	ribonuclease P/MRP 25kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_53579	chr2	74787698	74788000	+	14.57683	NA	intron (NM_138804, intron 8 of 10)	intron (NM_138804, intron 8 of 10)	6337	NM_001381	1796	Hs.103854	NM_001381	HPRD:04228	DOK1	P62DOK	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	protein-coding
19-PTNLD28-TUMOR_peak_2754	chr1	40942857	40943197	+	14.57683	NA	promoter-TSS (NM_198494)	promoter-TSS (NM_198494)	-275	NM_198494	339559	Hs.434385	NM_198494	HPRD:15883	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_363	chr1	6403611	6403835	+	14.57683	NA	intron (NM_181866, intron 2 of 8)	intron (NM_181866, intron 2 of 8)	15281	NM_181866	11332	Hs.126137	NM_007274	HPRD:12517	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_95156	chr7	128523761	128523994	+	14.57663	NA	intron (NM_001135914, intron 28 of 36)	intron (NM_001135914, intron 28 of 36)	17413	NM_001195150	100130705	Hs.641532	NM_001195150		LOC100130705	-	uncharacterized LOC100130705	protein-coding
19-PTNLD28-TUMOR_peak_41789	chr17	43249343	43249557	+	14.57512	NA	Intergenic	Intergenic	11186	NM_144608	124790	Hs.56382	NM_144608	HPRD:08129	HEXIM2	-	hexamethylene bis-acetamide inducible 2	protein-coding
19-PTNLD28-TUMOR_peak_106363	chr9	132245715	132246129	+	14.57482	NA	Intergenic	MIRb|SINE|MIR	-5017	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
19-PTNLD28-TUMOR_peak_100291	chr8	119360997	119361207	+	14.57311	NA	intron (NR_109794, intron 4 of 4)	intron (NR_109794, intron 4 of 4)	-237044	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_87561	chr6	43089418	43089547	+	14.57311	NA	intron (NM_001270398, intron 1 of 19)	intron (NM_001270398, intron 1 of 19)	44930	NM_001270398	5754	Hs.90572	NM_002821	HPRD:03534	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_55683	chr2	130913619	130913877	+	14.57035	NA	intron (NM_017951, intron 13 of 19)	intron (NM_017951, intron 13 of 19)	-11041	NM_207310	91409	Hs.29383	NM_207310	HPRD:08534	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
19-PTNLD28-TUMOR_peak_7906	chr1	165513086	165513389	+	14.56905	NA	promoter-TSS (NM_001005214)	promoter-TSS (NM_001005214)	-241	NM_001005214	440699	Hs.664975	NM_001005214	HPRD:13396	LRRC52	-	leucine rich repeat containing 52	protein-coding
19-PTNLD28-TUMOR_peak_37381	chr16	31891899	31892146	+	14.56905	NA	intron (NM_001265588, intron 2 of 4)	intron (NM_001265588, intron 2 of 4)	6943	NM_001265588	10308	Hs.460645	NM_003414	HPRD:06883	ZNF267	HZF2	zinc finger protein 267	protein-coding
19-PTNLD28-TUMOR_peak_83746	chr5	167840148	167840356	+	14.56905	NA	intron (NM_015238, intron 8 of 22)	intron (NM_015238, intron 8 of 22)	-73211	NM_002887	5917	Hs.654907	NM_002887	HPRD:00142	RARS	ArgRS|DALRD1	arginyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_73365	chr3	194102240	194102585	+	14.56905	NA	Intergenic	Intergenic	-11940	NM_001135057	131578	Hs.288467	NM_130830	HPRD:10058	LRRC15	LIB	leucine rich repeat containing 15	protein-coding
19-PTNLD28-TUMOR_peak_101795	chr8	145925560	145926085	+	14.56905	NA	Intergenic	CpG	55148	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
19-PTNLD28-TUMOR_peak_60273	chr20	24929653	24929913	+	14.56905	NA	promoter-TSS (NM_003650)	promoter-TSS (NM_003650)	-83	NM_003650	8530	Hs.143212	NM_003650	HPRD:04458	CST7	CMAP	cystatin F (leukocystatin)	protein-coding
19-PTNLD28-TUMOR_peak_78582	chr5	350447	350720	+	14.56905	NA	intron (NM_020731, intron 2 of 11)	intron (NM_020731, intron 2 of 11)	46292	NM_001242412	57491	Hs.50823	NM_020731	HPRD:07356	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
19-PTNLD28-TUMOR_peak_66357	chr3	8019019	8019214	+	14.56905	NA	intron (NR_110131, intron 2 of 3)	intron (NR_110131, intron 2 of 3)	38878	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
19-PTNLD28-TUMOR_peak_26563	chr12	118247430	118247602	+	14.56830	NA	intron (NM_173598, intron 3 of 19)	L2a|LINE|L2	158512	NM_173598	283455	Hs.375836	NM_173598	HPRD:13952	KSR2	-	kinase suppressor of ras 2	protein-coding
19-PTNLD28-TUMOR_peak_25201	chr12	69724886	69725180	+	14.56830	NA	Intergenic	HERVK22-int|LTR|ERVK	-17101	NM_000239	4069	Hs.524579	NM_000239	HPRD:01085	LYZ	LZM	lysozyme	protein-coding
19-PTNLD28-TUMOR_peak_53282	chr2	69371218	69371467	+	14.56830	NA	intron (NM_053034, intron 12 of 14)	intron (NM_053034, intron 12 of 14)	40528	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
19-PTNLD28-TUMOR_peak_1846	chr1	28623263	28623592	+	14.56830	NA	Intergenic	Intergenic	-32086	NM_001127350	54797	Hs.479911	NM_017638	HPRD:17476	MED18	p28b	mediator complex subunit 18	protein-coding
19-PTNLD28-TUMOR_peak_40169	chr17	9720598	9720724	+	14.56830	NA	Intergenic	Intergenic	-8720	NM_004246	9340	Hs.248202	NM_004246		GLP2R	-	glucagon-like peptide 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_102626	chr9	32148649	32148790	+	14.56830	NA	Intergenic	LTR13|LTR|ERVK	-235882	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_57137	chr2	177338015	177338148	+	14.56830	NA	Intergenic	MIRb|SINE|MIR	127699	NR_031648	100302142		NR_031648		MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
19-PTNLD28-TUMOR_peak_104691	chr9	96975891	96976078	+	14.56830	NA	Intergenic	Intergenic	-9136	NR_046163	158257	Hs.652626	NR_046163	ENSG00000230262	MIRLET7DHG	-	MIRLET7D host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_45054	chr18	26161548	26161870	+	14.56830	NA	Intergenic	Intergenic	-404264	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_45290	chr18	35117962	35118077	+	14.56830	NA	intron (NM_001025087, intron 1 of 12)	intron (NM_001025087, intron 1 of 12)	27981	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_94565	chr7	102523544	102523916	+	14.56830	NA	intron (NR_105043, intron 15 of 20)	intron (NR_105043, intron 15 of 20)	-29614	NM_005824	10234	Hs.567412	NM_005824	HPRD:10059	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
19-PTNLD28-TUMOR_peak_29733	chr14	31911026	31911231	+	14.56830	NA	intron (NR_110045, intron 2 of 3)	intron (NR_110045, intron 2 of 3)	15552	NM_080664	112487	Hs.116014	NM_080664	HPRD:16599	DTD2	C14orf126	D-tyrosyl-tRNA deacylase 2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_62434	chr20	58680605	58680768	+	14.56830	NA	Intergenic	Intergenic	17945	NR_109918	729296	Hs.534781	NR_109916		LOC729296	-	uncharacterized LOC729296	ncRNA
19-PTNLD28-TUMOR_peak_34802	chr15	81319617	81319888	+	14.56830	NA	Intergenic	Intergenic	26457	NM_022566	59274	Hs.513071	NM_022566	HPRD:11300	MESDC1	-	mesoderm development candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_36587	chr16	18850905	18851128	+	14.56830	NA	intron (NM_015092, intron 42 of 62)	intron (NM_015092, intron 42 of 62)	-38159	NM_015161	23204	Hs.634882	NM_015161	HPRD:09641	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_5250	chr1	105008180	105008368	+	14.56830	NA	Intergenic	HERVE_a-int|LTR|ERV1	392629	NR_033990	100129138	Hs.514487	NR_033990	ENSG00000215869	LOC100129138	-	THAP domain containing, apoptosis associated protein 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_83538	chr5	158403126	158403270	+	14.56830	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	123590	NM_001290360	1879	Hs.573143	NM_024007	HPRD:01256	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
19-PTNLD28-TUMOR_peak_56524	chr2	159638256	159638423	+	14.56830	NA	Intergenic	Intergenic	-13490	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_17181	chr11	11809400	11809716	+	14.56830	NA	Intergenic	Intergenic	-4789	NR_107037	102465870		NR_107037		MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
19-PTNLD28-TUMOR_peak_98898	chr8	58255991	58256148	+	14.56830	NA	Intergenic	Intergenic	63967	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
19-PTNLD28-TUMOR_peak_65237	chr22	33733550	33733903	+	14.56830	NA	exon (NM_133642, exon 10 of 15)	exon (NM_133642, exon 10 of 15)	98929	NR_039921	100616295		NR_039921		MIR4764	-	microRNA 4764	ncRNA
19-PTNLD28-TUMOR_peak_39847	chr17	4837514	4837876	+	14.56830	NA	exon (NM_000173, exon 2 of 2)	exon (NM_000173, exon 2 of 2)	2103	NM_000173	2811	Hs.1472	NM_000173	HPRD:01976	GP1BA	BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|VWDP	glycoprotein Ib (platelet), alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_27109	chr12	127675704	127675995	+	14.56830	NA	Intergenic	Intergenic	-130907	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_90802	chr7	1099985	1100303	+	14.56677	NA	intron (NM_001134395, intron 2 of 4)	intron (NM_001134395, intron 2 of 4)	3003	NM_138445	115330	Hs.585007	NM_138445	HPRD:17064	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
19-PTNLD28-TUMOR_peak_47372	chr19	11932443	11932584	+	14.56049	NA	intron (NM_152357, intron 1 of 3)	intron (NM_152357, intron 1 of 3)	7406	NM_152357	126070	Hs.418192	NM_152357	HPRD:11718	ZNF440	-	zinc finger protein 440	protein-coding
19-PTNLD28-TUMOR_peak_29440	chr14	23053033	23053154	+	14.56049	NA	intron (NM_001344, intron 1 of 2)	L2b|LINE|L2	5050	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_10222	chr1	222278812	222278975	+	14.56049	NA	Intergenic	Intergenic	-363375	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_8619	chr1	181159131	181159264	+	14.56049	NA	Intergenic	Intergenic	-46327	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_50311	chr19	55291864	55292108	+	14.56049	NA	intron (NM_014218, intron 5 of 7)	intron (NM_014218, intron 5 of 7)	-9470	NR_110738	101928804	Hs.742628	NR_110737		LOC101928804	-	uncharacterized LOC101928804	ncRNA
19-PTNLD28-TUMOR_peak_71245	chr3	139373606	139373832	+	14.56049	NA	intron (NM_178177, intron 1 of 4)	L2b|LINE|L2	23166	NM_001200047	349565	Hs.208673	NM_178177	HPRD:16370	NMNAT3	PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_15911	chr10	120630192	120630657	+	14.56049	NA	Intergenic	Intergenic	-115666	NM_153810	143384	Hs.420024	NM_153810	HPRD:12576	CACUL1	C10orf46|CAC1	CDK2-associated, cullin domain 1	protein-coding
19-PTNLD28-TUMOR_peak_71784	chr3	152274870	152275046	+	14.56049	NA	Intergenic	Intergenic	-216179	NM_001123228	645843	Hs.632562	NM_001123228	ENSG00000221962	TMEM14E	-	transmembrane protein 14E	protein-coding
19-PTNLD28-TUMOR_peak_31945	chr14	98035152	98035414	+	14.56049	NA	intron (NR_110166, intron 4 of 4)	L2a|LINE|L2	110130	NR_110166	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_84397	chr5	177706887	177707352	+	14.56049	NA	intron (NM_173465, intron 5 of 28)	intron (NM_173465, intron 5 of 28)	-47296	NR_103509	85007	Hs.248746	NM_153373	HPRD:18482	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_80218	chr5	61974176	61974367	+	14.56049	NA	Intergenic	L1PA4|LINE|L1	99709	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_54574	chr2	102418928	102419080	+	14.56049	NA	intron (NM_145686, intron 3 of 30)	L2a|LINE|L2	104466	NM_145687	9448	Hs.701013	NM_004834	HPRD:05235	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_68459	chr3	55033296	55033578	+	14.56049	NA	intron (NM_018398, intron 31 of 37)	intron (NM_018398, intron 31 of 37)	-71365	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_32519	chr15	22277111	22277354	+	14.56049	NA	promoter-TSS (NR_015416)	promoter-TSS (NR_015416)	-799	NR_110480	101927079	Hs.525666	NR_110116		LOC101927079	-	uncharacterized LOC101927079	ncRNA
19-PTNLD28-TUMOR_peak_32517	chr15	22194684	22194927	+	14.56049	NA	Intergenic	Intergenic	-49003	NR_028506	440225	Hs.722451	NR_028506	ENSG00000258997	NF1P2	NF1HHS	neurofibromin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_75141	chr4	48187901	48188269	+	14.56049	NA	intron (NM_003215, intron 2 of 17)	SVA_B|Other|Other	-51812	NM_003328	7294	Hs.479669	NM_003328	HPRD:02505	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_31954	chr14	98441700	98441880	+	14.55931	NA	intron (NR_015430, intron 1 of 2)	intron (NR_015430, intron 1 of 2)	2671	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	ncRNA
19-PTNLD28-TUMOR_peak_53538	chr2	74415467	74415651	+	14.55931	NA	Intergenic	LTR27|LTR|ERV1	-9564	NM_018221	55233	Hs.602092	NM_018221		MOB1A	C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
19-PTNLD28-TUMOR_peak_85699	chr6	17394159	17394598	+	14.55931	NA	intron (NM_006366, intron 1 of 12)	intron (NM_006366, intron 1 of 12)	642	NM_006366	10486	Hs.132902	NM_006366	HPRD:10808	CAP2	-	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_34280	chr15	70556446	70556752	+	14.55931	NA	Intergenic	Intergenic	-166343	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_36558	chr16	16478391	16478886	+	14.55824	NA	intron (NM_001282511, intron 2 of 7)	intron (NM_001282511, intron 2 of 7)	5536	NM_001282511	101059953	Hs.636569	NM_001282511		NPIPA8	LCR16a9	nuclear pore complex interacting protein family, member A8	protein-coding
19-PTNLD28-TUMOR_peak_50722	chr2	263972	264213	+	14.55824	NA	promoter-TSS (NM_007099)	promoter-TSS (NM_007099)	5	NM_015677	26751	Hs.515951	NM_015677	HPRD:15336	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_48948	chr19	39329309	39329508	+	14.55403	NA	intron (NM_001005335, intron 9 of 12)	intron (NM_001005335, intron 9 of 12)	-6911	NM_001398	1891	Hs.196176	NM_001398	HPRD:02825	ECH1	HPXEL	enoyl CoA hydratase 1, peroxisomal	protein-coding
19-PTNLD28-TUMOR_peak_95685	chr7	137937428	137937783	+	14.55403	NA	Intergenic	HERVL-int|LTR|ERVL	129101	NR_039678	100616226		NR_039678	miRBase:MI0016819	MIR4468	-	microRNA 4468	ncRNA
19-PTNLD28-TUMOR_peak_37178	chr16	29910821	29911050	+	14.55399	NA	promoter-TSS (NM_001114099)	promoter-TSS (NM_001114099)	-350	NM_012410	26470	Hs.6314	NM_012410	HPRD:06686	SEZ6L2	PSK-1	seizure related 6 homolog (mouse)-like 2	protein-coding
19-PTNLD28-TUMOR_peak_42489	chr17	55601366	55601505	+	14.54979	NA	promoter-TSS (NR_110808)	promoter-TSS (NR_110808)	-477	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
19-PTNLD28-TUMOR_peak_45653	chr18	46478967	46479200	+	14.54979	NA	Intergenic	CpG-11785	-2002	NM_001190821	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_98332	chr8	39912279	39912773	+	14.54949	NA	Intergenic	Intergenic	-98461	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_2985	chr1	43759722	43759930	+	14.54949	NA	Intergenic	Intergenic	-6740	NM_001253357	7075	Hs.78824	NM_005424	HPRD:02572	TIE1	JTK14|TIE	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_60933	chr20	36748724	36748923	+	14.54656	NA	Intergenic	Intergenic	44877	NM_004613	7052	Hs.517033	NM_004613	HPRD:01825	TGM2	G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC	transglutaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_58483	chr2	220154187	220154858	+	14.54656	NA	3' UTR (NM_001199764, exon 23 of 23)	3' UTR (NM_001199764, exon 23 of 23)	4400	NR_029688	406944		NR_029688		MIR153-1	MIRN153-1	microRNA 153-1	ncRNA
19-PTNLD28-TUMOR_peak_85849	chr6	20541053	20541236	+	14.54001	NA	intron (NM_017774, intron 2 of 15)	L2a|LINE|L2	6456	NM_017774	54901	Hs.657604	NM_017774	HPRD:13022	CDKAL1	-	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_47537	chr19	13733157	13733288	+	14.54001	NA	Intergenic	AluSc8|SINE|Alu	-115948	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_22761	chr12	6556106	6556230	+	14.54001	NA	non-coding (NR_015382, exon 4 of 6)	non-coding (NR_015382, exon 4 of 6)	2117	NM_001242	939	Hs.355307	NM_001242	HPRD:01723	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
19-PTNLD28-TUMOR_peak_96207	chr7	149083672	149083850	+	14.53071	NA	Intergenic	HAL1|LINE|L1	74292	NM_015694	27153	Hs.38512	NM_015694	HPRD:13849	ZNF777	-	zinc finger protein 777	protein-coding
19-PTNLD28-TUMOR_peak_87166	chr6	37051097	37051696	+	14.52829	NA	Intergenic	Intergenic	77973	NM_173558	221472	Hs.509664	NM_173558	HPRD:05478	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89036	chr6	109288394	109288623	+	14.52829	NA	intron (NM_032131, intron 17 of 17)	intron (NM_032131, intron 17 of 17)	41683	NM_001199934	27244	Hs.591336	NM_014454	HPRD:07310	SESN1	PA26|SEST1	sestrin 1	protein-coding
19-PTNLD28-TUMOR_peak_3994	chr1	62752447	62752670	+	14.52829	NA	intron (NM_181712, intron 1 of 9)	intron (NM_181712, intron 1 of 9)	32525	NM_181712	163782	Hs.283398	NM_181712	HPRD:14109	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
19-PTNLD28-TUMOR_peak_92886	chr7	65028337	65028481	+	14.52829	NA	intron (NR_038378, intron 8 of 9)	intron (NR_038378, intron 8 of 9)	-84358	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
19-PTNLD28-TUMOR_peak_61234	chr20	43013134	43013268	+	14.52829	NA	non-coding (NR_109949, exon 3 of 4)	non-coding (NR_109949, exon 3 of 4)	11145	NR_109949	101927219	Hs.655919	NR_109949	ENSG00000229005	HNF4A-AS1	uc002xlx	HNF4A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82293	chr5	134577675	134577947	+	14.52679	NA	intron (NR_037895, intron 2 of 3)	intron (NR_037895, intron 2 of 3)	6056	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_95171	chr7	128738875	128739027	+	14.52363	NA	Intergenic	Intergenic	-27374	NR_002144	407835	Hs.592273	NR_002144		LOC407835	-	mitogen-activated protein kinase kinase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46975	chr19	7572853	7573071	+	14.52316	NA	intron (NM_198534, intron 8 of 8)	intron (NM_198534, intron 8 of 8)	-8042	NM_018083	140467	Hs.133475	NM_018083	HPRD:10331	ZNF358	ZFEND	zinc finger protein 358	protein-coding
19-PTNLD28-TUMOR_peak_11847	chr10	6002556	6002687	+	14.52316	NA	intron (NR_046362, intron 1 of 4)	intron (NR_046362, intron 1 of 4)	16953	NM_002189	3601	Hs.445124	NM_002189	HPRD:03045	IL15RA	CD215	interleukin 15 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_55414	chr2	121806698	121807041	+	14.52316	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	235909	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_57745	chr2	201348469	201348668	+	14.52316	NA	Intergenic	LTR41|LTR|ERVL	26224	NM_152387	130535	Hs.605775	NM_152387	HPRD:08098	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_38511	chr16	69895714	69895881	+	14.52316	NA	intron (NM_001270454, intron 6 of 23)	intron (NM_001270454, intron 6 of 23)	23157	NM_001270453	11060	Hs.408458	NM_007014	HPRD:03812	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_7430	chr1	157776423	157776638	+	14.52316	NA	intron (NM_052938, intron 2 of 10)	intron (NM_052938, intron 2 of 10)	13410	NM_001159398	115350	Hs.656112	NM_052938	HPRD:07350	FCRL1	CD307a|FCRH1|IFGP1|IRTA5	Fc receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96300	chr7	150490763	150491213	+	14.52316	NA	intron (NM_001101314, intron 2 of 5)	intron (NM_001101314, intron 2 of 5)	6633	NM_001101314	28959	Hs.647090	NM_014020	HPRD:17443	TMEM176B	LR8	transmembrane protein 176B	protein-coding
19-PTNLD28-TUMOR_peak_68127	chr3	49492045	49492166	+	14.52316	NA	Intergenic	Intergenic	-14031	NM_001177643	1605	Hs.76111	NM_004393	HPRD:00546	DAG1	156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9	dystroglycan 1 (dystrophin-associated glycoprotein 1)	protein-coding
19-PTNLD28-TUMOR_peak_39823	chr17	4623007	4623388	+	14.52316	NA	intron (NM_001257330, intron 11 of 14)	intron (NM_001257330, intron 11 of 14)	9408	NM_001257328	409	Hs.435811	NM_004313	HPRD:00147	ARRB2	ARB2|ARR2|BARR2	arrestin, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_60505	chr20	31126462	31126729	+	14.51774	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	28833	NR_110619	101929698	Hs.638392	NR_110619		LOC101929698	-	uncharacterized LOC101929698	ncRNA
19-PTNLD28-TUMOR_peak_31242	chr14	74219338	74219693	+	14.51774	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-5935	NR_039727	100616158		NR_039727	miRBase:MI0016868	MIR4505	-	microRNA 4505	ncRNA
19-PTNLD28-TUMOR_peak_41134	chr17	34807902	34808025	+	14.51684	NA	promoter-TSS (NM_032258).2	promoter-TSS (NM_032258).2	97	NM_032258	84218	Hs.617010	NM_032258	HPRD:09667	TBC1D3F	TBC1D3|TBC1D3G	TBC1 domain family, member 3F	protein-coding
19-PTNLD28-TUMOR_peak_47922	chr19	17610489	17610887	+	14.51684	NA	intron (NM_198580, intron 7 of 11)	intron (NM_198580, intron 7 of 11)	-11744	NM_012088	25796	Hs.466165	NM_012088	HPRD:12001	PGLS	6PGL	6-phosphogluconolactonase	protein-coding
19-PTNLD28-TUMOR_peak_5829	chr1	117165396	117165512	+	14.51587	NA	intron (NM_001007237, intron 2 of 10)	intron (NM_001007237, intron 2 of 10)	44124	NM_001542	3321	Hs.171057	NM_001542	HPRD:04602	IGSF3	EWI-3|V8	immunoglobulin superfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_38468	chr16	69166426	69166585	+	14.51587	NA	promoter-TSS (NM_001040146)	promoter-TSS (NM_001040146)	6	NM_032830	84916	Hs.461113	NM_032830	HPRD:08468	CIRH1A	CIRHIN|NAIC|TEX292|UTP4	cirrhosis, autosomal recessive 1A (cirhin)	protein-coding
19-PTNLD28-TUMOR_peak_109539	chrX	134049200	134049509	+	14.51587	NA	promoter-TSS (NM_019556)	promoter-TSS (NM_019556)	-57	NM_019556	56180	Hs.590789	NM_019556	HPRD:06483	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69324	chr3	93782000	93782173	+	14.51587	NA	promoter-TSS (NM_176815)	promoter-TSS (NM_176815)	-19	NM_001195643	200895	Hs.718516	NM_176815	HPRD:11246	DHFRL1	DHFRP4	dihydrofolate reductase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_7487	chr1	158853309	158853482	+	14.51587	NA	Intergenic	Intergenic	-47942	NM_152501	149628	Hs.710248	NM_152501	HPRD:09999	PYHIN1	IFIX	pyrin and HIN domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_57923	chr2	204646965	204647244	+	14.51587	NA	Intergenic	Intergenic	75906	NM_001243077	940	Hs.443123	NM_006139	HPRD:01727	CD28	Tp44	CD28 molecule	protein-coding
19-PTNLD28-TUMOR_peak_15093	chr10	99159914	99160138	+	14.51131	NA	intron (NM_001284337, intron 2 of 30)	intron (NM_001284337, intron 2 of 30)	1101	NM_015179	23223	Hs.434251	NM_015179	HPRD:11103	RRP12	KIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_50202	chr19	53868445	53868610	+	14.51131	NA	promoter-TSS (NR_003699)	promoter-TSS (NR_003699)	-441	NR_003699	170958	Hs.352638	NR_003699	ENSG00000203326	ZNF525	-	zinc finger protein 525	pseudo
19-PTNLD28-TUMOR_peak_110392	chrY	59358945	59359386	+	14.50969	NA	non-coding (NR_110561, exon 3 of 3).2	non-coding (NR_110561, exon 3 of 3).2	1689	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16	pseudo
19-PTNLD28-TUMOR_peak_110063	chrX	155255939	155256380	+	14.50969	NA	non-coding (NR_110561, exon 3 of 3)	non-coding (NR_110561, exon 3 of 3)	1689	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16	pseudo
19-PTNLD28-TUMOR_peak_4098	chr1	65210480	65210855	+	14.50953	NA	promoter-TSS (NM_018211)	promoter-TSS (NM_018211)	-111	NM_018211	55225	Hs.591443	NM_018211	HPRD:11154	RAVER2	-	ribonucleoprotein, PTB-binding 2	protein-coding
19-PTNLD28-TUMOR_peak_83566	chr5	158946512	158946631	+	14.50953	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-53287	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LOC285627	-	uncharacterized LOC285627	ncRNA
19-PTNLD28-TUMOR_peak_75053	chr4	40631784	40631977	+	14.50953	NA	promoter-TSS (NM_001098634)	promoter-TSS (NM_001098634)	3	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
19-PTNLD28-TUMOR_peak_96439	chr7	151594366	151594893	+	14.50953	NA	Intergenic	Intergenic	-20313	NM_016203	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_24170	chr12	50356787	50356944	+	14.50686	NA	promoter-TSS (NR_110590)	promoter-TSS (NR_110590)	-158	NR_110589	101927318	Hs.668233	NR_110589		LOC101927318	-	uncharacterized LOC101927318	ncRNA
19-PTNLD28-TUMOR_peak_17569	chr11	19440978	19441317	+	14.50686	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	68876	NM_001111018	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_29009	chr13	109809686	109809969	+	14.50553	NA	intron (NM_015011, intron 32 of 34)	intron (NM_015011, intron 32 of 34)	9824	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37274	chr16	30798319	30798574	+	14.50553	NA	promoter-TSS (NM_001080417)	promoter-TSS (NM_001080417)	77	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
19-PTNLD28-TUMOR_peak_29549	chr14	24521152	24521859	+	14.50553	NA	TTS (NR_102688)	TTS (NR_102688)	299	NM_138360	90668	Hs.26135	NM_138360	HPRD:11278	LRRC16B	C14orf121|CARMIL3|crml-1	leucine rich repeat containing 16B	protein-coding
19-PTNLD28-TUMOR_peak_68295	chr3	52001360	52001504	+	14.50553	NA	promoter-TSS (NM_020418)	promoter-TSS (NM_020418)	18	NM_020418	57060	Hs.20930	NM_020418	HPRD:16343	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_36427	chr16	14503532	14503708	+	14.49459	NA	Intergenic	Intergenic	100478	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_26805	chr12	122396908	122397039	+	14.49459	NA	exon (NM_144668, exon 13 of 22)	exon (NM_144668, exon 13 of 22)	40510	NM_001178003	144406	Hs.709837	NM_144668	HPRD:14570	WDR66	CaM-IP4	WD repeat domain 66	protein-coding
19-PTNLD28-TUMOR_peak_26559	chr12	118187262	118187577	+	14.49459	NA	intron (NM_173598, intron 4 of 19)	intron (NM_173598, intron 4 of 19)	218609	NM_173598	283455	Hs.375836	NM_173598	HPRD:13952	KSR2	-	kinase suppressor of ras 2	protein-coding
19-PTNLD28-TUMOR_peak_51628	chr2	25915057	25915325	+	14.49459	NA	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-18675	NM_033148	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_37670	chr16	48431399	48431601	+	14.49459	NA	Intergenic	AluJb|SINE|Alu	-12271	NM_003031	6477	Hs.706828	NM_003031	HPRD:03736	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_54707	chr2	106886226	106886580	+	14.49459	NA	Intergenic	CpG	-75608	NM_025076	80146	Hs.469561	NM_025076	HPRD:15642	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_89249	chr6	117762217	117762688	+	14.49390	NA	Intergenic	Intergenic	-15434	NM_002944	6098	Hs.1041	NM_002944	HPRD:01295	ROS1	MCF3|ROS|c-ros-1	ROS proto-oncogene 1 , receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_67967	chr3	47058662	47058829	+	14.49390	NA	intron (NM_014159, intron 20 of 20)	intron (NM_014159, intron 20 of 20)	5713	NR_024046	100129354	Hs.201522	NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_56006	chr2	138615560	138615730	+	14.49390	NA	Intergenic	L2|LINE|L2	69857	NR_120402	101928273	Hs.560928	NR_120402	ENSG00000234007	LOC101928273	-	uncharacterized LOC101928273	ncRNA
19-PTNLD28-TUMOR_peak_66737	chr3	13503156	13503345	+	14.49390	NA	Intergenic	MamGypLTR3|LTR|Gypsy	18303	NR_046690	100874101	Hs.535701	NR_046690		HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29218	chr13	114864770	114865035	+	14.49390	NA	intron (NM_007368, intron 1 of 23)	intron (NM_007368, intron 1 of 23)	33193	NM_007368	22821	Hs.593075	NM_007368	HPRD:05537	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
19-PTNLD28-TUMOR_peak_73729	chr4	323746	323861	+	14.49390	NA	Intergenic	LTR13|LTR|ERVK	-7793	NM_003441	7700	Hs.654355	NM_003441		ZNF141	D4S90|PAPA6|pHZ-44	zinc finger protein 141	protein-coding
19-PTNLD28-TUMOR_peak_60893	chr20	36244300	36244477	+	14.49390	NA	Intergenic	Intergenic	7133	NR_047461	100861522	Hs.580680	NR_047461	ENSG00000225759	LINC00489	-	long intergenic non-protein coding RNA 489	ncRNA
19-PTNLD28-TUMOR_peak_80018	chr5	56390984	56391425	+	14.49390	NA	Intergenic	L1PB1|LINE|L1	-78571	NM_022913	65056	Hs.444279	NM_022913	HPRD:16333	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_564	chr1	9099327	9099453	+	14.49390	NA	intron (NM_003039, intron 8 of 11)	CpG	-12986	NM_207420	155184	Hs.531239	NM_207420	HPRD:15365	SLC2A7	GLUT7	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_52945	chr2	60829931	60830212	+	14.49390	NA	Intergenic	Intergenic	-49438	NM_138559	53335	Hs.370549	NM_018014	HPRD:05949	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_63047	chr21	30117893	30118259	+	14.49390	NA	Intergenic	Intergenic	139619	NR_047510	29104	Hs.163846	NM_013240		N6AMT1	C21orf127|HEMK2|MTQ2|N6AMT|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_76251	chr4	90170228	90170475	+	14.49390	NA	exon (NM_198281, exon 2 of 2)	exon (NM_198281, exon 2 of 2)	58810	NM_198281	285513	Hs.605082	NM_198281		GPRIN3	GRIN3	GPRIN family member 3	protein-coding
19-PTNLD28-TUMOR_peak_73228	chr3	191217595	191217770	+	14.49390	NA	intron (NR_120606, intron 1 of 6)	intron (NR_120606, intron 1 of 6)	38730	NM_001083308	152138	Hs.690618	NM_001083308	ENSG00000253548	PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_16662	chr11	2484407	2484597	+	14.49390	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	1818	NM_181798	3784	Hs.95162	NM_000218	HPRD:06341	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel, KQT-like subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_20861	chr11	102347664	102347831	+	14.49390	NA	Intergenic	MER34-int|LTR|ERV1	-23972	NM_052932	114908	Hs.503709	NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
19-PTNLD28-TUMOR_peak_38890	chr16	79641601	79641736	+	14.49390	NA	Intergenic	L3|LINE|CR1	-7046	NM_001031804	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_60544	chr20	31708208	31708450	+	14.49390	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	39011	NM_182519	149954	Hs.38961	NM_182519	HPRD:16645	BPIFB4	C20orf186|LPLUNC4|RY2G5|dJ726C3.5	BPI fold containing family B, member 4	protein-coding
19-PTNLD28-TUMOR_peak_103970	chr9	79425459	79425712	+	14.49390	NA	intron (NM_015225, intron 6 of 18)	intron (NM_015225, intron 6 of 18)	46231	NR_015342	50652	Hs.663766	NR_015342	ENSG00000225937	PCA3	DD3|NCRNA00019|PCAT3	prostate cancer associated 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_29688	chr14	30361708	30361884	+	14.49390	NA	intron (NM_002742, intron 1 of 17)	intron (NM_002742, intron 1 of 17)	35103	NM_002742	5587	Hs.508999	NM_002742	HPRD:05668	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
19-PTNLD28-TUMOR_peak_93703	chr7	82574855	82575087	+	14.49390	NA	intron (NM_033026, intron 6 of 24)	intron (NM_033026, intron 6 of 24)	217226	NM_014510	27445	Hs.12376	NM_014510	HPRD:16078	PCLO	ACZ	piccolo presynaptic cytomatrix protein	protein-coding
19-PTNLD28-TUMOR_peak_12240	chr10	18251000	18251354	+	14.49390	NA	intron (NM_152725, intron 3 of 11)	intron (NM_152725, intron 3 of 11)	10409	NM_152725	221074	Hs.350895	NM_152725	HPRD:15384	SLC39A12	LZT-Hs8|ZIP-12|bA570F3.1	solute carrier family 39 (zinc transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_81732	chr5	118691446	118691647	+	14.49390	NA	promoter-TSS (NM_014350)	promoter-TSS (NM_014350)	31	NM_014350	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_107434	chrX	5398886	5399109	+	14.49390	NA	Intergenic	L1PA2|LINE|L1	746247	NM_001282146	57502	Hs.21107	NM_020742	HPRD:02336	NLGN4X	ASPGX2|AUTSX2|HLNX|HNL4X|NLGN4	neuroligin 4, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_42019	chr17	46101218	46101386	+	14.48963	NA	Intergenic	CpG	13311	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	ncRNA
19-PTNLD28-TUMOR_peak_64700	chr22	24097446	24097753	+	14.48857	NA	promoter-TSS (NM_013378)	promoter-TSS (NM_013378)	-969	NM_013378	29802	Hs.136713	NM_013378	HPRD:05426	VPREB3	8HS20|N27C7-2	pre-B lymphocyte 3	protein-coding
19-PTNLD28-TUMOR_peak_103239	chr9	42856997	42857112	+	14.48525	NA	intron (NR_046175, intron 1 of 3).2	intron (NR_046175, intron 1 of 3).2	-1098	NR_026558	441432	Hs.743215	NR_026558		AQP7P3	AQPap-3	aquaporin 7 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_388	chr1	6550602	6550775	+	14.48337	NA	promoter-TSS (NM_001265594)	promoter-TSS (NM_001265594)	-34	NM_001265594	57449	Hs.284232	NM_020631	HPRD:11104	PLEKHG5	CMTRIC|DSMA4|GEF720|Syx|Tech	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding
19-PTNLD28-TUMOR_peak_75701	chr4	75719031	75719469	+	14.48020	NA	intron (NM_001729, intron 1 of 5)	CpG	632	NM_001729	685	Hs.710156	NM_001729		BTC	-	betacellulin	protein-coding
19-PTNLD28-TUMOR_peak_86507	chr6	30725152	30725298	+	14.47547	NA	Intergenic	MIR|SINE|MIR	-12898	NM_003897	8870	Hs.76095	NM_003897	HPRD:04295	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
19-PTNLD28-TUMOR_peak_30169	chr14	50235180	50235755	+	14.47448	NA	intron (NM_014315, intron 1 of 12)	CpG	680	NM_014315	23588	Hs.509264	NM_014315	HPRD:08824	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_29397	chr14	21852128	21852271	+	14.47381	NA	5' UTR (NM_007192, exon 1 of 26)	5' UTR (NM_007192, exon 1 of 26)	226	NM_007192	11198	Hs.213724	NM_007192	HPRD:16088	SUPT16H	CDC68|FACTP140|SPT16/CDC68	suppressor of Ty 16 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_3679	chr1	55352105	55352351	+	14.47098	NA	intron (NM_014762, intron 1 of 8)	intron (NM_014762, intron 1 of 8)	693	NM_014762	1718	Hs.498727	NM_014762	HPRD:05916	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
19-PTNLD28-TUMOR_peak_10795	chr1	230820057	230820244	+	14.46527	NA	intron (NM_007357, intron 11 of 17)	intron (NM_007357, intron 11 of 17)	30186	NM_000029	183	Hs.19383	NM_000029	HPRD:00106	AGT	ANHU|SERPINA8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding
19-PTNLD28-TUMOR_peak_34177	chr15	68781409	68781557	+	14.46527	NA	Intergenic	Intergenic	-56991	NM_001004439	22801	Hs.436416	NM_012211	HPRD:05310	ITGA11	HsT18964	integrin, alpha 11	protein-coding
19-PTNLD28-TUMOR_peak_43836	chr17	77782544	77782729	+	14.46527	NA	Intergenic	Intergenic	-11721	NM_020649	57332	Hs.387258	NM_020649		CBX8	PC3|RC1	chromobox homolog 8	protein-coding
19-PTNLD28-TUMOR_peak_30643	chr14	61619768	61620022	+	14.46527	NA	Intergenic	Intergenic	128635	NM_001017970	161291	Hs.146180	NM_001017970	HPRD:18567	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
19-PTNLD28-TUMOR_peak_79711	chr5	43040463	43040646	+	14.46481	NA	promoter-TSS (NM_001014279)	promoter-TSS (NM_001014279)	-107	NM_001014279	389289	Hs.529385	NM_001014279		ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_31619	chr14	89973517	89973758	+	14.46480	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-68923	NR_024620	29018	Hs.673124	NM_014099	ENSG00000259073	FOXN3-AS2	-	FOXN3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_32620	chr15	25201341	25202077	+	14.46480	NA	intron (NM_022804, intron 1 of 3)	intron (NM_022804, intron 1 of 3)	1574	NM_003097	6638	Hs.555970	NM_003097	HPRD:01653	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
19-PTNLD28-TUMOR_peak_66130	chr22	50982649	50982897	+	14.46480	NA	Intergenic	CpG	-3689	NM_138433	113730	Hs.137007	NM_138433	HPRD:14453	KLHDC7B	-	kelch domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_88933	chr6	105775345	105775527	+	14.46473	NA	intron (NM_002726, intron 9 of 14)	intron (NM_002726, intron 9 of 14)	75563	NM_002726	5550	Hs.436564	NM_002726	HPRD:02673	PREP	PE|PEP	prolyl endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_65717	chr22	42337349	42337509	+	14.46473	NA	intron (NM_001002876, intron 4 of 4)	intron (NM_001002876, intron 4 of 4)	-1206	NM_001110215	79019	Hs.208912	NM_024053	HPRD:12798	CENPM	C22orf18|CENP-M|PANE1|bK250D10.2	centromere protein M	protein-coding
19-PTNLD28-TUMOR_peak_32115	chr14	102529519	102530086	+	14.46473	NA	Intergenic	Intergenic	23710	NM_005348	3320	Hs.525600	NM_005348	HPRD:00777	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90kDa alpha (cytosolic), class A member 1	protein-coding
19-PTNLD28-TUMOR_peak_29873	chr14	35120096	35120364	+	14.46473	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-20864	NM_152233	58533	Hs.356647	NM_021249	HPRD:12086	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
19-PTNLD28-TUMOR_peak_55755	chr2	132121244	132121783	+	14.46473	NA	5' UTR (NM_001077637, exon 1 of 1)	5' UTR (NM_001077637, exon 1 of 1)	218	NM_001077637	150786	Hs.645670	NM_001077637		WTH3DI	-	RAB6C-like	protein-coding
19-PTNLD28-TUMOR_peak_72435	chr3	174580047	174580175	+	14.46473	NA	intron (NM_207015, intron 1 of 13)	intron (NM_207015, intron 1 of 13)	3000	NM_207015	254827	Hs.565848	NM_207015	HPRD:16388	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_57552	chr2	192792138	192792308	+	14.46473	NA	Intergenic	CR1_Mam|LINE|CR1	-80217	NM_004657	8436	Hs.26530	NM_004657	HPRD:09470	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding
19-PTNLD28-TUMOR_peak_101586	chr8	144137236	144137541	+	14.46330	NA	Intergenic	Intergenic	16709	NM_173687	286122	Hs.660382	NM_173687	HPRD:08781	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
19-PTNLD28-TUMOR_peak_55470	chr2	122855970	122856166	+	14.46330	NA	Intergenic	Intergenic	342947	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_36570	chr16	18420844	18421306	+	14.45961	NA	intron (NM_001282511, intron 2 of 7).2	intron (NM_001282511, intron 2 of 7).2	5444	NM_001282511	101059953	Hs.636569	NM_001282511		NPIPA8	LCR16a9	nuclear pore complex interacting protein family, member A8	protein-coding
19-PTNLD28-TUMOR_peak_100300	chr8	119633212	119633900	+	14.45589	NA	intron (NR_038210, intron 1 of 4)	intron (NR_038210, intron 1 of 4)	316	NR_038210	552860	Hs.571527	NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86694	chr6	31971163	31971308	+	14.45386	NA	TTS (NM_001252204).6	TTS (NM_001252204).6	-2124	NM_000500	1589	Hs.654479	NM_000500	HPRD:01942	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450, family 21, subfamily A, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_48733	chr19	36390661	36390905	+	14.45386	NA	intron (NM_139239, intron 1 of 11)	CpG	769	NM_139239	84807	Hs.466531	NM_139239	HPRD:18140	NFKBID	IkappaBNS|TA-NFKBH	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta	protein-coding
19-PTNLD28-TUMOR_peak_19303	chr11	65411425	65411811	+	14.45347	NA	intron (NM_153253, intron 4 of 15)	intron (NM_153253, intron 4 of 15)	4026	NM_153253	6494	Hs.530477	NM_006747	HPRD:03713	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
19-PTNLD28-TUMOR_peak_77820	chr4	159010889	159011025	+	14.45347	NA	Intergenic	L1PA2|LINE|L1	82761	NM_016613	51313	Hs.567498	NM_016613	HPRD:13194	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
19-PTNLD28-TUMOR_peak_6860	chr1	152155478	152155808	+	14.44974	NA	Intergenic	Intergenic	-23939	NM_001122965	126638	Hs.376144	NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
19-PTNLD28-TUMOR_peak_99836	chr8	103120646	103120796	+	14.43576	NA	intron (NM_001040624, intron 1 of 7)	intron (NM_001040624, intron 1 of 7)	15841	NM_001040624	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_80656	chr5	73159858	73160298	+	14.43576	NA	intron (NM_001244364, intron 8 of 27)	intron (NM_001244364, intron 8 of 27)	50735	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_26544	chr12	118018600	118018733	+	14.43576	NA	intron (NM_173598, intron 6 of 19)	intron (NM_173598, intron 6 of 19)	-219059	NM_001204218	4842	Hs.654410	NM_000620	HPRD:01226	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_40866	chr17	28037043	28037239	+	14.43576	NA	intron (NM_001282130, intron 2 of 7)	intron (NM_001282130, intron 2 of 7)	51309	NM_001282131	85464	Hs.654754	NM_033389	HPRD:09487	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_93869	chr7	90224367	90224595	+	14.43576	NA	Intergenic	Intergenic	-1195	NM_001287135	5218	Hs.258576	NM_012395	HPRD:15121	CDK14	PFTAIRE1|PFTK1	cyclin-dependent kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_7916	chr1	165665236	165665408	+	14.43379	NA	intron (NM_000696, intron 1 of 10)	AluSq2|SINE|Alu	2578	NM_000696	223	Hs.2533	NM_000696	HPRD:04109	ALDH9A1	ALDH4|ALDH7|ALDH9|E3|TMABADH	aldehyde dehydrogenase 9 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_10109	chr1	219729318	219729484	+	14.43209	NA	Intergenic	Intergenic	-317218	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_26943	chr12	124475926	124476188	+	14.43209	NA	intron (NM_152437, intron 3 of 4)	intron (NM_152437, intron 3 of 4)	18295	NM_001204299	100533183	Hs.432901	NM_001204299	ENSG00000255906	ZNF664-FAM101A	-	protein FAM101A	protein-coding
19-PTNLD28-TUMOR_peak_101565	chr8	143897288	143897517	+	14.43209	NA	Intergenic	Intergenic	-18815	NM_002066	2765	Hs.661218	NM_002066	HPRD:03844	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
19-PTNLD28-TUMOR_peak_24531	chr12	54506196	54506492	+	14.43209	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	10351	NR_026657	100240734	Hs.634954	NR_026657		LOC100240734	-	uncharacterized LOC100240734	ncRNA
19-PTNLD28-TUMOR_peak_106058	chr9	127573106	127573465	+	14.43209	NA	3' UTR (NM_182487, exon 8 of 8)	3' UTR (NM_182487, exon 8 of 8)	10132	NM_001282715	169611	Hs.357004	NM_182487	HPRD:14876	OLFML2A	PRO34319	olfactomedin-like 2A	protein-coding
19-PTNLD28-TUMOR_peak_9235	chr1	201474684	201474862	+	14.43209	NA	intron (NM_001193570, intron 1 of 5)	intron (NM_001193570, intron 1 of 5)	1194	NM_001193571	1465	Hs.108080	NM_004078	HPRD:00470	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141	cysteine and glycine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_86699	chr6	32003900	32004045	+	14.43192	NA	TTS (NM_001252204)	TTS (NM_001252204)	-2121	NM_000500	1589	Hs.654479	NM_000500	HPRD:01942	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450, family 21, subfamily A, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_63064	chr21	30506127	30506356	+	14.43013	NA	intron (NM_001286619, intron 4 of 6)	intron (NM_001286619, intron 4 of 6)	3435	NM_001286620	56911	Hs.222802	NM_020152	HPRD:10764	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_4438	chr1	77878229	77878442	+	14.42940	NA	intron (NM_012093, intron 7 of 13)	intron (NM_012093, intron 7 of 13)	130048	NM_012093	26289	Hs.559718	NM_012093	HPRD:10472	AK5	AK6	adenylate kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_16122	chr10	126198852	126199316	+	14.42940	NA	intron (NM_001167880, intron 5 of 5)	intron (NM_001167880, intron 5 of 5)	48743	NM_001167880	64077	Hs.527748	NM_022126	HPRD:17274	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_39892	chr17	6339392	6339577	+	14.42940	NA	promoter-TSS (NM_001285399)	promoter-TSS (NM_001285399)	-965	NM_001033054	23746	Hs.279887	NM_014336	HPRD:05092	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_87600	chr6	43576157	43576324	+	14.42940	NA	intron (NM_001291970, intron 9 of 10)	intron (NM_001291970, intron 9 of 10)	18850	NM_001286216	54676	Hs.485449	NM_019096	HPRD:08465	GTPBP2	-	GTP binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_65792	chr22	43386228	43386402	+	14.42940	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	24869	NM_001184970	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_100316	chr8	119880360	119880494	+	14.42940	NA	Intergenic	Intergenic	83956	NM_002546	4982	Hs.81791	NM_002546	HPRD:04032	TNFRSF11B	OCIF|OPG|TR1	tumor necrosis factor receptor superfamily, member 11b	protein-coding
19-PTNLD28-TUMOR_peak_91932	chr7	33080490	33080676	+	14.42940	NA	5' UTR (NM_001166118, exon 1 of 11)	5' UTR (NM_001166118, exon 1 of 11)	194	NM_016489	51251	Hs.487933	NM_016489	HPRD:05871	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
19-PTNLD28-TUMOR_peak_94000	chr7	94326726	94326916	+	14.42940	NA	Intergenic	Intergenic	41139	NM_001172438	23089	Hs.147492	NM_015068	ENSG00000242265	PEG10	EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3	paternally expressed 10	protein-coding
19-PTNLD28-TUMOR_peak_25592	chr12	93366090	93366261	+	14.42940	NA	Intergenic	AluJo|SINE|Alu	-43068	NM_003566	8411	Hs.567367	NM_003566	HPRD:05460	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_67053	chr3	19004724	19004894	+	14.42940	NA	Intergenic	L1HS|LINE|L1	-185208	NM_144633	131096	Hs.475656	NM_144633	HPRD:10006	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
19-PTNLD28-TUMOR_peak_10493	chr1	226390404	226390784	+	14.42940	NA	Intergenic	AluJb|SINE|Alu	-16171	NM_022735	64746	Hs.520207	NM_022735	HPRD:08432	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_74521	chr4	11068287	11068522	+	14.42940	NA	Intergenic	L1PA2|LINE|L1	-302047	NR_030298	693157		NR_030298	miRBase:MI0003579	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
19-PTNLD28-TUMOR_peak_9526	chr1	204395203	204395328	+	14.42940	NA	intron (NM_002646, intron 32 of 33)	MIR|SINE|MIR	-14320	NM_032833	84919	Hs.304376	NM_032833	HPRD:17892	PPP1R15B	CREP	protein phosphatase 1, regulatory subunit 15B	protein-coding
19-PTNLD28-TUMOR_peak_24043	chr12	48336254	48336397	+	14.42940	NA	Intergenic	Intergenic	-21005	NM_001143842	79022	Hs.596726	NM_024056	HPRD:14690	TMEM106C	-	transmembrane protein 106C	protein-coding
19-PTNLD28-TUMOR_peak_110100	chrY	2001160	2001463	+	14.42940	NA	Intergenic	L1MA4A|LINE|L1	317285	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_68026	chr3	48199026	48199169	+	14.42940	NA	3' UTR (NM_001789, exon 15 of 15)	3' UTR (NM_001789, exon 15 of 15)	30704	NM_001789	993	Hs.437705	NM_001789	HPRD:00305	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
19-PTNLD28-TUMOR_peak_107364	chrX	2051160	2051463	+	14.42940	NA	Intergenic	L1MA4A|LINE|L1	317285	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_96280	chr7	150075345	150075652	+	14.42933	NA	promoter-TSS (NM_173680)	promoter-TSS (NM_173680)	-908	NM_173680	285971	Hs.655734	NM_173680	HPRD:14567	ZNF775	-	zinc finger protein 775	protein-coding
19-PTNLD28-TUMOR_peak_11065	chr1	235254159	235254420	+	14.42823	NA	Intergenic	Intergenic	36963	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_54580	chr2	102596886	102597237	+	14.42823	NA	Intergenic	Intergenic	-2866	NR_103791	100506328	Hs.516245	NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
19-PTNLD28-TUMOR_peak_8274	chr1	173477040	173477226	+	14.42823	NA	intron (NM_178527, intron 24 of 27)	intron (NM_178527, intron 24 of 27)	30647	NM_004905	9588	Hs.120	NM_004905	HPRD:03817	PRDX6	1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29	peroxiredoxin 6	protein-coding
19-PTNLD28-TUMOR_peak_31651	chr14	90863118	90863525	+	14.42428	NA	promoter-TSS (NM_006888)	promoter-TSS (NM_006888)	-6	NM_006888	801	Hs.282410	NM_006888	HPRD:00241	CALM1	CALML2|CAMI|CPVT4|DD132|PHKD|caM	calmodulin 1 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_45447	chr18	43206411	43206511	+	14.42428	NA	intron (NM_007163, intron 3 of 19)	intron (NM_007163, intron 3 of 19)	11695	NM_007163	8170	Hs.710927	NM_007163	HPRD:03366	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 (urea transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_86451	chr6	30180670	30180954	+	14.42175	NA	intron (NM_003449, intron 1 of 9).8	intron (NM_003449, intron 1 of 9).8	459	NM_003449	7726	Hs.485041	NM_003449	HPRD:02901	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
19-PTNLD28-TUMOR_peak_5339	chr1	109595323	109595497	+	14.42157	NA	Intergenic	SVA_B|Other|Other	-10560	NM_001142551	22911	Hs.570055	NM_014969	HPRD:15670	WDR47	-	WD repeat domain 47	protein-coding
19-PTNLD28-TUMOR_peak_74261	chr4	7632371	7632721	+	14.42157	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	-123271	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105251	chr9	111235635	111235927	+	14.42157	NA	Intergenic	Intergenic	382494	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_84338	chr5	177098122	177098309	+	14.42157	NA	intron (NR_026921, intron 1 of 5)	intron (NR_026921, intron 1 of 5)	1063	NR_026921	202181	Hs.189914	NR_026921		LOC202181	-	SUMO-interacting motifs containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_19708	chr11	69845988	69846169	+	14.42157	NA	Intergenic	L4|LINE|RTE	63952	NR_120530	101928443	Hs.313468	NR_120529	ENSG00000248844	LOC101928443	-	uncharacterized LOC101928443	ncRNA
19-PTNLD28-TUMOR_peak_24305	chr12	52499038	52499221	+	14.42036	NA	intron (NR_120440, intron 1 of 1)	intron (NR_120440, intron 1 of 1)	11776	NR_120440	26628	Hs.524431	NR_120437		OR7E47P	OR7E141	olfactory receptor, family 7, subfamily E, member 47 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_3898	chr1	60853793	60854054	+	14.42036	NA	Intergenic	LTR16A1|LTR|ERVL	-314481	NM_152377	127795	Hs.47385	NM_152377	HPRD:11338	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_59535	chr20	3146321	3146470	+	14.42036	NA	intron (NM_001282533, intron 4 of 5)	intron (NM_001282533, intron 4 of 5)	-5839	NM_199415	22888	Hs.654646	NM_014948	HPRD:15605	UBOX5	RNF37|UBCE7IP5|UIP5	U-box domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_103172	chr9	41498029	41498168	+	14.42036	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2581	NM_015667	26165	Hs.123004	NM_015667	HPRD:12954	SPATA31A7	C9orf36A|FAM75A4|FAM75A7|SPATA31A4	SPATA31 subfamily A, member 7	protein-coding
19-PTNLD28-TUMOR_peak_68902	chr3	69160116	69160360	+	14.42036	NA	intron (NM_198271, intron 2 of 2)	intron (NM_198271, intron 2 of 2)	11508	NM_198271	56203	Hs.350621	NM_198271	HPRD:13993	LMOD3	-	leiomodin 3 (fetal)	protein-coding
19-PTNLD28-TUMOR_peak_32279	chr14	105106430	105106609	+	14.42036	NA	Intergenic	CpG	-35422	NM_001286389	388021	Hs.652298	NM_207379	HPRD:13464	TMEM179	C14orf90|TMEM179A	transmembrane protein 179	protein-coding
19-PTNLD28-TUMOR_peak_58587	chr2	223639753	223640058	+	14.42036	NA	Intergenic	L2c|LINE|L2	-85827	NM_004457	2181	Hs.655772	NM_004457		ACSL3	ACS3|FACL3|PRO2194	acyl-CoA synthetase long-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_23572	chr12	29470878	29471074	+	14.42036	NA	promoter-TSS (NR_103860)	promoter-TSS (NR_103860)	-195	NR_103860	100506606	Hs.298851	NR_103860	ENSG00000257176	LOC100506606	-	uncharacterized LOC100506606	ncRNA
19-PTNLD28-TUMOR_peak_74786	chr4	25101230	25101382	+	14.42036	NA	Intergenic	Intergenic	60898	NM_016955	51091	Hs.253305	NM_016955	HPRD:11561	SEPSECS	LP|PCH2D|SLA|SLA/LP	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding
19-PTNLD28-TUMOR_peak_21404	chr11	116881989	116882190	+	14.42036	NA	intron (NM_025164, intron 1 of 23)	intron (NM_025164, intron 1 of 23)	87042	NM_025164	23387	Hs.167451	NM_025164	HPRD:11121	SIK3	QSK|SIK-3	SIK family kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_83471	chr5	156904066	156904198	+	14.42036	NA	TTS (NM_033274)	TTS (NM_033274)	17105	NM_001099287	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_71098	chr3	136557859	136558176	+	14.42036	NA	intron (NM_025246, intron 1 of 1)	intron (NM_025246, intron 1 of 1)	20156	NM_025246	80723	Hs.477692	NM_025246	HPRD:15532	SLC35G2	TMEM22	solute carrier family 35, member G2	protein-coding
19-PTNLD28-TUMOR_peak_34730	chr15	79195036	79195210	+	14.42036	NA	Intergenic	LTR13A|LTR|ERVK	29792	NM_001265605	10933	Hs.374503	NM_006791	HPRD:09532	MORF4L1	Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_74644	chr4	16533957	16534252	+	14.42036	NA	intron (NM_001130834, intron 5 of 8)	intron (NM_001130834, intron 5 of 8)	89550	NR_049865	100847063		NR_049865		MIR548AX	-	microRNA 548ax	ncRNA
19-PTNLD28-TUMOR_peak_32203	chr14	103726765	103727116	+	14.42036	NA	Intergenic	LTR66|LTR|ERVL	-71575	NR_033938	100131366	Hs.147881	NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
19-PTNLD28-TUMOR_peak_33806	chr15	60211676	60211817	+	14.42036	NA	Intergenic	MIRc|SINE|MIR	-84675	NM_012182	27023	Hs.734475	NM_012182	HPRD:07017	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
19-PTNLD28-TUMOR_peak_43956	chr17	79339005	79339174	+	14.41854	NA	Intergenic	MER1B|DNA|hAT-Charlie	20071	NM_001272086	100130370	Hs.646594	NM_001272086		LOC100130370	-	uncharacterized LOC100130370	protein-coding
19-PTNLD28-TUMOR_peak_40849	chr17	27507366	27507702	+	14.41854	NA	promoter-TSS (NM_078471)	promoter-TSS (NM_078471)	-127	NM_203318	399687	Hs.462590	NM_078471	HPRD:10106	MYO18A	MYSPDZ|SPR210	myosin XVIIIA	protein-coding
19-PTNLD28-TUMOR_peak_40847	chr17	27505686	27505997	+	14.41854	NA	intron (NM_203318, intron 1 of 40)	intron (NM_203318, intron 1 of 40)	1566	NM_078471	399687	Hs.462590	NM_078471	HPRD:10106	MYO18A	MYSPDZ|SPR210	myosin XVIIIA	protein-coding
19-PTNLD28-TUMOR_peak_101130	chr8	134394279	134394431	+	14.41058	NA	Intergenic	Intergenic	-84808	NM_006096	10397	Hs.372914	NM_006096	HPRD:05586	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_9276	chr1	201873851	201874022	+	14.41058	NA	intron (NM_012134, intron 1 of 2)	intron (NM_012134, intron 1 of 2)	16131	NM_198149	149345	Hs.632471	NM_198149	HPRD:12729	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
19-PTNLD28-TUMOR_peak_32353	chr14	105865084	105865305	+	14.41058	NA	TTS (NM_001100913)	TTS (NM_001100913)	274	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
19-PTNLD28-TUMOR_peak_92147	chr7	41735868	41736264	+	14.41058	NA	intron (NR_027118, intron 1 of 3)	intron (NR_027118, intron 1 of 3)	2520	NR_027119	285954	Hs.656869	NR_027118	ENSG00000224116	INHBA-AS1	-	INHBA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_94105	chr7	97511015	97511247	+	14.41058	NA	Intergenic	Intergenic	-9277	NM_001673	440	Hs.489207	NM_001673	HPRD:00153	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
19-PTNLD28-TUMOR_peak_82844	chr5	142197516	142197682	+	14.41058	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	47307	NM_001135608	23092	Hs.654668	NM_015071	HPRD:05643	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
19-PTNLD28-TUMOR_peak_95770	chr7	139330799	139330932	+	14.41058	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	122191	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2, member L	protein-coding
19-PTNLD28-TUMOR_peak_31869	chr14	95722655	95722835	+	14.41058	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	63500	NM_024734	79789	Hs.301478	NM_024734	HPRD:13076	CLMN	-	calmin (calponin-like, transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_41296	chr17	37401103	37401233	+	14.41058	NA	Intergenic	Intergenic	-19128	NM_198993	342667	Hs.145068	NM_198993	HPRD:18113	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
19-PTNLD28-TUMOR_peak_45524	chr18	44337446	44337615	+	14.41058	NA	promoter-TSS (NM_013305)	promoter-TSS (NM_013305)	-491	NM_013305	29906	Hs.465025	NM_013305	HPRD:06199	ST8SIA5	SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_47054	chr19	8420532	8420893	+	14.40843	NA	Intergenic	Intergenic	-8299	NR_104213	51129	Hs.9613	NM_016109	HPRD:16173	ANGPTL4	ANGPTL2|ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_60226	chr20	23812668	23812847	+	14.40664	NA	Intergenic	Intergenic	-5445	NM_001322	1470	Hs.669305	NM_001322	HPRD:00461	CST2	-	cystatin SA	protein-coding
19-PTNLD28-TUMOR_peak_34415	chr15	73646040	73646435	+	14.40664	NA	intron (NM_005477, intron 1 of 7)	intron (NM_005477, intron 1 of 7)	15368	NM_005477	10021	Hs.86941	NM_005477	HPRD:09240	HCN4	SSS2	hyperpolarization activated cyclic nucleotide-gated potassium channel 4	protein-coding
19-PTNLD28-TUMOR_peak_15838	chr10	118507698	118507832	+	14.40664	NA	Intergenic	Intergenic	-5680	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
19-PTNLD28-TUMOR_peak_66451	chr3	9381781	9382324	+	14.40664	NA	Intergenic	Intergenic	-22665	NM_001114092	25917	Hs.443081	NM_015453	HPRD:15507	THUMPD3	-	THUMP domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_77101	chr4	134949693	134949927	+	14.40664	NA	Intergenic	Intergenic	173093	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_67639	chr3	40158382	40158529	+	14.40664	NA	intron (NM_001284426, intron 1 of 14)	intron (NM_001284426, intron 1 of 14)	16953	NM_001284426	25924	Hs.594535	NM_015460	HPRD:14796	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_44996	chr18	24033445	24033820	+	14.40664	NA	Intergenic	Intergenic	30673	NR_110762	100506787	Hs.734746	NR_110762		LOC100506787	-	uncharacterized LOC100506787	ncRNA
19-PTNLD28-TUMOR_peak_81477	chr5	108526852	108527198	+	14.40664	NA	Intergenic	Intergenic	218650	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_30839	chr14	65721743	65721989	+	14.40664	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-32801	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
19-PTNLD28-TUMOR_peak_22584	chr12	4136640	4136794	+	14.40143	NA	Intergenic	Intergenic	-154103	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_37229	chr16	30388823	30389332	+	14.40023	NA	promoter-TSS (NM_001214906)	promoter-TSS (NM_001214906)	-556	NM_001214906	197407	Hs.513501	NM_152652	HPRD:15836	ZNF48	ZNF553	zinc finger protein 48	protein-coding
19-PTNLD28-TUMOR_peak_13297	chr10	45495795	45495985	+	14.39878	NA	promoter-TSS (NM_006963)	promoter-TSS (NM_006963)	-383	NM_006963	7570	Hs.462693	NM_006963	HPRD:01917	ZNF22	HKR-T1|KOX15|ZNF422|Zfp422	zinc finger protein 22	protein-coding
19-PTNLD28-TUMOR_peak_38893	chr16	79801952	79802160	+	14.39878	NA	intron (NR_104663, intron 2 of 5)	intron (NR_104663, intron 2 of 5)	-2312	NR_104660	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_105995	chr9	126115484	126115632	+	14.39841	NA	Intergenic	LTR33|LTR|ERVL	-2888	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_86810	chr6	33218188	33218331	+	14.39466	NA	3' UTR (NM_022553, exon 20 of 20)	3' UTR (NM_022553, exon 20 of 20)	946	NR_044997	414765	Hs.675862	NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_29181	chr13	114298039	114298408	+	14.38455	NA	Intergenic	L1MB3|LINE|L1	14290	NM_000705	496	Hs.434202	NM_000705	HPRD:00669	ATP4B	ATP6B	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_13995	chr10	70586923	70587680	+	14.38455	NA	promoter-TSS (NM_001130160)	promoter-TSS (NM_001130160)	7	NM_001130161	219736	Hs.37636	NM_152709	HPRD:18579	STOX1	C10orf24|PEE4	storkhead box 1	protein-coding
19-PTNLD28-TUMOR_peak_82236	chr5	133782695	133782932	+	14.38402	NA	Intergenic	Intergenic	-12075	NR_105044	102546229		NR_105044		LOC102546229	-	uncharacterized LOC102546229	ncRNA
19-PTNLD28-TUMOR_peak_39119	chr16	84853998	84854227	+	14.38402	NA	intron (NM_031476, intron 1 of 14)	intron (NM_031476, intron 1 of 14)	525	NM_031476	83716	Hs.513779	NM_031476	HPRD:13186	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_79394	chr5	33401628	33401859	+	14.37788	NA	Intergenic	Intergenic	-39059	NM_001258437	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_86133	chr6	26311853	26312150	+	14.37571	NA	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-26274	NM_003543	8365	Hs.591790	NM_003543	HPRD:11919	HIST1H4H	H4/h|H4FH	histone cluster 1, H4h	protein-coding
19-PTNLD28-TUMOR_peak_29563	chr14	24630742	24630975	+	14.37571	NA	TTS (NM_017999)	TTS (NM_017999)	436	NM_006084	10379	Hs.1706	NM_006084	HPRD:00960	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
19-PTNLD28-TUMOR_peak_49582	chr19	47746361	47746498	+	14.37472	NA	Intergenic	CpG	-10406	NM_001127242	27113	Hs.467020	NM_014417	HPRD:16165	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
19-PTNLD28-TUMOR_peak_36315	chr16	11730263	11730481	+	14.37472	NA	Intergenic	LTR9|LTR|ERV1	-31917	NM_003498	8303	Hs.618526	NM_003498	HPRD:04327	SNN	-	stannin	protein-coding
19-PTNLD28-TUMOR_peak_92321	chr7	44837001	44837194	+	14.37472	NA	intron (NM_021130, intron 1 of 4)	intron (NM_021130, intron 1 of 4)	862	NM_001300981	5478	Hs.356331	NM_021130	HPRD:00457	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A (cyclophilin A)	protein-coding
19-PTNLD28-TUMOR_peak_24626	chr12	56121445	56121645	+	14.37462	NA	promoter-TSS (NM_001257401)	promoter-TSS (NM_001257401)	27	NM_001257401	967	Hs.445570	NM_001780	HPRD:01121	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding
19-PTNLD28-TUMOR_peak_55350	chr2	121199704	121199948	+	14.37249	NA	Intergenic	CpG	24099	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_84497	chr5	179248722	179248910	+	14.36747	NA	intron (NM_003900, intron 1 of 7)	intron (NM_003900, intron 1 of 7)	974	NM_003900	8878	Hs.724025	NM_003900	HPRD:03319	SQSTM1	A170|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
19-PTNLD28-TUMOR_peak_30268	chr14	51920752	51920921	+	14.36487	NA	TTS (NR_051990)	TTS (NR_051990)	-35003	NM_001042481	122786	Hs.434914	NM_152330	HPRD:12646	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_32638	chr15	25955402	25955526	+	14.36487	NA	intron (NM_024490, intron 10 of 20)	intron (NM_024490, intron 10 of 20)	138508	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	ncRNA
19-PTNLD28-TUMOR_peak_88270	chr6	72541884	72542059	+	14.36487	NA	Intergenic	L1PA3|LINE|L1	-54435	NM_014989	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_100144	chr8	114525148	114525290	+	14.36487	NA	Intergenic	HERVH-int|LTR|ERV1	-75977	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_7676	chr1	161352036	161352220	+	14.36487	NA	Intergenic	Intergenic	-14455	NM_001013625	257177	Hs.534593	NM_001013625	HPRD:13257	C1orf192	Flattop|Fltp	chromosome 1 open reading frame 192	protein-coding
19-PTNLD28-TUMOR_peak_84681	chr6	996691	996958	+	14.36487	NA	intron (NR_027116, intron 2 of 3)	intron (NR_027116, intron 2 of 3)	104743	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
19-PTNLD28-TUMOR_peak_86600	chr6	31356949	31357219	+	14.36487	NA	Intergenic	Intergenic	-10477	NM_001289152	100507436	Hs.130838	NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
19-PTNLD28-TUMOR_peak_94487	chr7	101880096	101880206	+	14.36487	NA	intron (NM_181552, intron 22 of 23)	intron (NM_181552, intron 22 of 23)	-48202	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_39228	chr16	85855181	85855306	+	14.36487	NA	Intergenic	Intergenic	22070	NM_001861	1327	Hs.433419	NM_001861	HPRD:00466	COX4I1	COX4|COX4-1|COXIV	cytochrome c oxidase subunit IV isoform 1	protein-coding
19-PTNLD28-TUMOR_peak_110059	chrX	154998177	154998339	+	14.36487	NA	intron (NM_005840, intron 1 of 1)	intron (NM_005840, intron 1 of 1)	807	NM_005840	10251	Hs.381912	NM_005840	HPRD:03917	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_110388	chrY	59101183	59101345	+	14.36487	NA	intron (NM_005840, intron 1 of 1).2	intron (NM_005840, intron 1 of 1).2	807	NM_005840	10251	Hs.381912	NM_005840	HPRD:03917	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_92629	chr7	55154101	55154593	+	14.35840	NA	intron (NM_201284, intron 1 of 15)	intron (NM_201284, intron 1 of 15)	67622	NM_005228	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_50670	chr1_gl000192_random	245456	245634	+	14.35840	NA	intron (NR_103556, intron 17 of 45)	intron (NR_103556, intron 17 of 45)	161965	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_9587	chr1	205110832	205110992	+	14.35840	NA	TTS (NM_015375)	TTS (NM_015375)	-19762	NM_001193272	5929	Hs.519230	NM_005057	HPRD:02826	RBBP5	RBQ3|SWD1	retinoblastoma binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_102586	chr9	28779278	28779602	+	14.35840	NA	intron (NM_001258282, intron 2 of 6)	intron (NM_001258282, intron 2 of 6)	-60137	NM_152570	158038	Hs.662661	NM_152570	HPRD:08715	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_63769	chr21	43920928	43921126	+	14.35082	NA	intron (NM_018964, intron 1 of 20)	intron (NM_018964, intron 1 of 20)	1285	NM_018964	54020	Hs.547009	NM_018964	HPRD:10479	SLC37A1	G3PP	solute carrier family 37 (glucose-6-phosphate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_4211	chr1	68037982	68038112	+	14.35044	NA	Intergenic	Intergenic	-112813	NM_001199741	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_22671	chr12	5551657	5551799	+	14.34927	NA	intron (NM_001102654, intron 1 of 1)	intron (NM_001102654, intron 1 of 1)	10448	NM_001102654	4908	Hs.99171	NM_002527	HPRD:01219	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
19-PTNLD28-TUMOR_peak_58424	chr2	219262450	219262908	+	14.34927	NA	promoter-TSS (NM_001206878)	promoter-TSS (NM_001206878)	-382	NM_001206878	58190	Hs.444468	NM_021198	HPRD:05615	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_21216	chr11	112705244	112705475	+	14.34870	NA	Intergenic	Intergenic	-126610	NM_181351	4684	Hs.503878	NM_000615	HPRD:00301	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_87407	chr6	41335558	41335710	+	14.34870	NA	Intergenic	Intergenic	32106	NM_001199510	9436	Hs.194721	NM_004828	HPRD:05168	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_5394	chr1	110089027	110089164	+	14.34870	NA	TTS (NM_031936)	TTS (NM_031936)	-2091	NM_006496	2773	Hs.73799	NM_006496		GNAI3	87U6|ARCND1	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_57899	chr2	203776330	203776477	+	14.34870	NA	promoter-TSS (NM_024744)	promoter-TSS (NM_024744)	-538	NM_001104586	79800	Hs.444982	NM_024744	HPRD:10464	CARF	ALS2CR8|NYD-SP24	calcium responsive transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_81598	chr5	112568045	112568210	+	14.34870	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	62485	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_106249	chr9	130939375	130939849	+	14.34870	NA	intron (NM_012127, intron 10 of 16)	AluJb|SINE|Alu	14256	NM_001131016	25792	Hs.212395	NM_012127	HPRD:13061	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_83498	chr5	157329917	157330380	+	14.34870	NA	Intergenic	Intergenic	-43965	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_90969	chr7	3103964	3104139	+	14.34870	NA	Intergenic	LTR16C|LTR|ERVL	-20472	NM_032415	84433	Hs.648101	NM_032415	HPRD:06234	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_76414	chr4	102875160	102875431	+	14.34870	NA	intron (NM_001127507, intron 6 of 15)	MLT1C|LTR|ERVL-MaLR	140312	NM_001083907	55024	Hs.480400	NM_017935	HPRD:09819	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_2457	chr1	36982066	36982207	+	14.34870	NA	Intergenic	Intergenic	-33221	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_10087	chr1	218879504	218879813	+	14.34870	NA	Intergenic	Intergenic	263690	NR_125715	103611157	Hs.133379	NR_125715		TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_38395	chr16	68056415	68056798	+	14.34870	NA	promoter-TSS (NM_001271763)	promoter-TSS (NM_001271763)	-241	NM_001271763	54920	Hs.534460	NM_017803	HPRD:08624	DUS2	DUS2L|SMM1|URLC8	dihydrouridine synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_102724	chr9	33621139	33621353	+	14.34870	NA	Intergenic	Intergenic	-2977	NR_003573	304	Hs.534301	NR_003573	ENSG00000231991	ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_70250	chr3	123511713	123511971	+	14.34754	NA	intron (NM_053025, intron 4 of 33)	intron (NM_053025, intron 4 of 33)	91307	NM_053026	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_67385	chr3	31770676	31770861	+	14.34754	NA	intron (NM_017784, intron 6 of 11)	intron (NM_017784, intron 6 of 11)	25063	NR_049771	100874206	Hs.662428	NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15660	chr10	113573998	113574134	+	14.34754	NA	Intergenic	L1PA2|LINE|L1	369471	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_99370	chr8	85381764	85381902	+	14.34754	NA	intron (NM_001100392, intron 2 of 9)	L1PA2|LINE|L1	-236329	NM_001287244	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_102101	chr9	6055364	6055543	+	14.34754	NA	Intergenic	Intergenic	-39813	NM_012416	26953	Hs.167496	NM_012416	HPRD:17953	RANBP6	-	RAN binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_85320	chr6	11154382	11154802	+	14.34754	NA	Intergenic	AluSx|SINE|Alu	-42521	NM_207582	405754	Hs.631996	NM_207582	HPRD:13648	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD, member 1	protein-coding
19-PTNLD28-TUMOR_peak_82144	chr5	132219064	132219223	+	14.34754	NA	exon (NM_014423, exon 20 of 21)	exon (NM_014423, exon 20 of 21)	9785	NM_052971	116842	Hs.337588	NM_052971		LEAP2	LEAP-2	liver expressed antimicrobial peptide 2	protein-coding
19-PTNLD28-TUMOR_peak_51516	chr2	23207457	23207622	+	14.34754	NA	Intergenic	L1PA2|LINE|L1	-400759	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_55273	chr2	119869312	119869506	+	14.34754	NA	Intergenic	LTR10A|LTR|ERV1	47062	NM_182528	165257	Hs.433493	NM_182528	HPRD:12713	C1QL2	C1QTNF10|CTRP10	complement component 1, q subcomponent-like 2	protein-coding
19-PTNLD28-TUMOR_peak_84054	chr5	172769919	172770153	+	14.34754	NA	Intergenic	Intergenic	-4422	NR_107023	102465862		NR_107023		MIR8056	hsa-mir-8056	microRNA 8056	ncRNA
19-PTNLD28-TUMOR_peak_87247	chr6	37958939	37959095	+	14.34754	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	171710	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_33641	chr15	55356654	55356793	+	14.34754	NA	Intergenic	L1PA2|LINE|L1	132508	NM_016304	51187	Hs.274772	NM_016304		RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_82718	chr5	140819971	140820213	+	14.34754	NA	intron (NM_003735, intron 1 of 3)	intron (NM_003735, intron 1 of 3)	9934	NM_003735	26025	Hs.368160	NM_003735	HPRD:07538	PCDHGA12	CDH21|FIB3|PCDH-GAMMA-A12	protocadherin gamma subfamily A, 12	protein-coding
19-PTNLD28-TUMOR_peak_53235	chr2	68073511	68073809	+	14.34754	NA	Intergenic	Intergenic	-20966	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_95704	chr7	138375354	138375494	+	14.34754	NA	Intergenic	L1MB7|LINE|L1	-11634	NM_001139456	136306	Hs.99414	NM_174959	HPRD:11235	SVOPL	-	SVOP-like	protein-coding
19-PTNLD28-TUMOR_peak_22809	chr12	6922669	6922784	+	14.34754	NA	intron (NM_000616, intron 3 of 9)	L1MC4a|LINE|L1	-8237	NM_019858	27239	Hs.631654	NM_014449	HPRD:13608	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
19-PTNLD28-TUMOR_peak_83949	chr5	171827253	171827402	+	14.34754	NA	intron (NM_001017995, intron 3 of 12)	HERVK11-int|LTR|ERVK	54200	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_58148	chr2	210616633	210616820	+	14.34754	NA	Intergenic	L1PA2|LINE|L1	-19991	NM_182587	285175	Hs.396201	NM_032504	HPRD:12809	UNC80	C2orf21|UNC-80	unc-80 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_49577	chr19	47730390	47730555	+	14.34603	NA	promoter-TSS (NR_036159)	promoter-TSS (NR_036159)	-196	NR_036159	100422832		NR_036159		MIR3191	-	microRNA 3191	ncRNA
19-PTNLD28-TUMOR_peak_73479	chr3	195339188	195339390	+	14.34575	NA	Intergenic	Intergenic	-28213	NM_001647	347	Hs.522555	NM_001647	HPRD:00134	APOD	-	apolipoprotein D	protein-coding
19-PTNLD28-TUMOR_peak_39426	chr16	89219157	89219279	+	14.34348	NA	intron (NR_104293, intron 10 of 10)	AluJr|SINE|Alu	-6410	NR_024347	283860	Hs.739138	NM_173617	HPRD:08209	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
19-PTNLD28-TUMOR_peak_65931	chr22	45996756	45997016	+	14.33752	NA	3' UTR (NM_006486, exon 17 of 17)	3' UTR (NM_006486, exon 17 of 17)	-70792	NM_001167621	25814	Hs.475125	NM_013236	HPRD:04624	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding
19-PTNLD28-TUMOR_peak_68580	chr3	58046568	58046777	+	14.33752	NA	intron (NM_001457, intron 1 of 45)	intron (NM_001457, intron 1 of 45)	52545	NM_001164317	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_25190	chr12	69458916	69459108	+	14.33752	NA	Intergenic	Intergenic	-101992	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_102636	chr9	32430800	32431032	+	14.33752	NA	intron (NM_001278352, intron 15 of 21)	intron (NM_001278352, intron 15 of 21)	46315	NM_001278352	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_12927	chr10	35378581	35378727	+	14.33752	NA	intron (NM_001198777, intron 1 of 20)	intron (NM_001198777, intron 1 of 20)	657	NM_003591	8453	Hs.82919	NM_003591	HPRD:06786	CUL2	-	cullin 2	protein-coding
19-PTNLD28-TUMOR_peak_42903	chr17	62709924	62710209	+	14.33752	NA	Intergenic	Intergenic	-51680	NM_022739	64750	Hs.515011	NM_022739		SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_102876	chr9	35733212	35733482	+	14.33628	NA	promoter-TSS (NM_006289)	promoter-TSS (NM_006289)	428	NR_106912	102466201		NR_106912		MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
19-PTNLD28-TUMOR_peak_44672	chr18	12702972	12703276	+	14.33474	NA	promoter-TSS (NM_024899)	promoter-TSS (NM_024899)	137	NM_020232	56984	Hs.464652	NM_020232	HPRD:11638	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding
19-PTNLD28-TUMOR_peak_63942	chr21	45679314	45679492	+	14.33474	NA	exon (NM_013369, exon 5 of 12)	exon (NM_013369, exon 5 of 12)	2696	NM_175867	29947	Hs.592165	NM_013369	HPRD:09417	DNMT3L	-	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding
19-PTNLD28-TUMOR_peak_62210	chr20	55377497	55377717	+	14.33474	NA	Intergenic	Intergenic	173249	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_42523	chr17	55977330	55977464	+	14.32705	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	3353	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_92424	chr7	47411675	47411862	+	14.32416	NA	intron (NM_022748, intron 16 of 30)	intron (NM_022748, intron 16 of 30)	209974	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_12461	chr10	24758938	24759317	+	14.32416	NA	intron (NM_001282770, intron 1 of 11)	intron (NM_001282770, intron 1 of 11)	3693	NM_001282770	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_14661	chr10	85898498	85898749	+	14.32416	NA	promoter-TSS (NM_014394)	promoter-TSS (NM_014394)	-562	NM_014394	27069	Hs.352656	NM_014394	HPRD:17038	GHITM	DERP2|HSPC282|MICS1|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_47411	chr19	12443385	12443631	+	14.32296	NA	intron (NM_145276, intron 1 of 3)	MER83|LTR|ERV1	1026	NM_145276	147837	Hs.663510	NM_145276	HPRD:15845	ZNF563	-	zinc finger protein 563	protein-coding
19-PTNLD28-TUMOR_peak_55021	chr2	113382056	113382214	+	14.31883	NA	Intergenic	Intergenic	19622	NR_033871	400999	Hs.585221	NR_033871		FLJ42351	-	uncharacterized LOC400999	ncRNA
19-PTNLD28-TUMOR_peak_84608	chr5	180671142	180671535	+	14.31704	NA	promoter-TSS (NR_002591)	promoter-TSS (NR_002591)	-432	NM_006098	10399	Hs.5662	NM_006098	HPRD:01503	GNB2L1	Gnb2-rs1|H12.3|HLC-7|PIG21|RACK1	guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_101544	chr8	143696825	143697083	+	14.31463	NA	Intergenic	Intergenic	-1121	NM_015193	23237	Hs.40888	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_84474	chr5	179049798	179049946	+	14.31463	NA	intron (NM_001257293, intron 2 of 13)	CpG	839	NM_001257293	3187	Hs.604001	NM_005520	HPRD:03021	HNRNPH1	HNRPH|HNRPH1|hnRNPH	heterogeneous nuclear ribonucleoprotein H1 (H)	protein-coding
19-PTNLD28-TUMOR_peak_18104	chr11	36385063	36385493	+	14.31407	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-12257	NM_024841	79899	Hs.19987	NM_024841	HPRD:07854	PRR5L	PROTOR2	proline rich 5 like	protein-coding
19-PTNLD28-TUMOR_peak_98657	chr8	49231352	49231586	+	14.31407	NA	Intergenic	Intergenic	-232658	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_92947	chr7	66148545	66148667	+	14.31407	NA	intron (NM_001287060, intron 1 of 9)	intron (NM_001287060, intron 1 of 9)	1528	NM_001287060	27342	Hs.530053	NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_70311	chr3	124278138	124278280	+	14.31149	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-25297	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_72378	chr3	172280728	172280915	+	14.31071	NA	Intergenic	Intergenic	-39524	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_29877	chr14	35169089	35169282	+	14.30641	NA	Intergenic	Intergenic	13838	NM_021914	1073	Hs.180141	NM_021914	HPRD:03262	CFL2	NEM7	cofilin 2 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_90334	chr6	159525223	159525356	+	14.30641	NA	Intergenic	Intergenic	-59105	NM_054114	117289	Hs.529984	NM_054114	HPRD:18143	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_55248	chr2	119613137	119613464	+	14.30641	NA	Intergenic	CpG	-7541	NM_001426	2019	Hs.271977	NM_001426	HPRD:08835	EN1	-	engrailed homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_82530	chr5	138905928	138906141	+	14.30641	NA	Intergenic	Harlequin-int|LTR|ERV1	-34717	NM_003339	7322	Hs.108332	NM_003339	HPRD:04268	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
19-PTNLD28-TUMOR_peak_103476	chr9	67291753	67291923	+	14.30439	NA	Intergenic	Intergenic	-2346	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_62481	chr20	60927766	60928087	+	14.30391	NA	promoter-TSS (NR_109924)	promoter-TSS (NR_109924)	-140	NR_109922	101928158	Hs.473256	NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61051	chr20	38614821	38615019	+	14.30386	NA	Intergenic	Intergenic	-18183	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_21962	chr11	126347504	126347708	+	14.30386	NA	intron (NM_001301097, intron 4 of 15)	intron (NM_001301097, intron 4 of 15)	71529	NM_001254759	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_101115	chr8	134243372	134243838	+	14.30386	NA	non-coding (NR_037944, exon 3 of 3)	non-coding (NR_037944, exon 3 of 3)	40323	NM_001204869	8840	Hs.492974	NM_003882		WISP1	CCN4|WISP1c|WISP1i|WISP1tc	WNT1 inducible signaling pathway protein 1	protein-coding
19-PTNLD28-TUMOR_peak_103985	chr9	79541857	79542069	+	14.30079	NA	Intergenic	Intergenic	-20960	NM_015225	158471	Hs.262857	NM_015225	HPRD:12970	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_76436	chr4	103541902	103542246	+	14.30079	NA	Intergenic	Intergenic	119588	NM_001165412	4790	Hs.618430	NM_003998	HPRD:01238	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
19-PTNLD28-TUMOR_peak_106380	chr9	132447927	132448209	+	14.30079	NA	intron (NM_016307, intron 1 of 3)	L2b|LINE|L2	20148	NM_016307	51450	Hs.660115	NM_016307	HPRD:05244	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_48864	chr19	38607643	38607790	+	14.30079	NA	intron (NM_015073, intron 8 of 21)	LTR78|LTR|ERV1	107174	NM_001289978	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_55988	chr2	138072501	138072623	+	14.30079	NA	intron (NM_001080427, intron 11 of 26)	L1PA3|LINE|L1	324100	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_1909	chr1	29472352	29472771	+	14.30079	NA	Intergenic	Intergenic	-22140	NM_001003682	399474	Hs.712722	NM_001003682	HPRD:13188	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
19-PTNLD28-TUMOR_peak_54471	chr2	100857057	100857232	+	14.30079	NA	intron (NR_103730, intron 1 of 2)	intron (NR_103730, intron 1 of 2)	32428	NR_103730	150577	Hs.434127	NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
19-PTNLD28-TUMOR_peak_12197	chr10	17028425	17028649	+	14.30079	NA	intron (NM_001081, intron 29 of 66)	intron (NM_001081, intron 29 of 66)	143279	NM_001081	8029	Hs.166206	NM_001081	HPRD:04296	CUBN	IFCR|MGA1|gp280	cubilin (intrinsic factor-cobalamin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_79054	chr5	15021501	15021697	+	14.30079	NA	Intergenic	Intergenic	-149712	NM_054027	56172	Hs.156727	NM_054027	HPRD:05509	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
19-PTNLD28-TUMOR_peak_52218	chr2	38660868	38661081	+	14.30079	NA	Intergenic	L2c|LINE|L2	-56542	NR_024191	64225	Hs.727652	NM_022374	HPRD:10662	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_22384	chr12	700562	700691	+	14.30079	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	18953	NM_001294345	4815	Hs.655804	NM_016533	HPRD:09530	NINJ2	-	ninjurin 2	protein-coding
19-PTNLD28-TUMOR_peak_57153	chr2	177632991	177633232	+	14.30079	NA	Intergenic	Intergenic	130629	NR_110599	102724224	Hs.663125	NR_110599		LOC102724224	-	uncharacterized LOC102724224	ncRNA
19-PTNLD28-TUMOR_peak_100681	chr8	126444616	126444817	+	14.30040	NA	intron (NM_001282985, intron 1 of 2)	intron (NM_001282985, intron 1 of 2)	265	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_26516	chr12	117565929	117566361	+	14.29151	NA	intron (NR_120464, intron 2 of 2)	(CATGT)n|Simple_repeat|Simple_repeat	28873	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_99812	chr8	102551431	102551558	+	14.29145	NA	intron (NM_024915, intron 1 of 15)	intron (NM_024915, intron 1 of 15)	46826	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104657	chr9	96231550	96231731	+	14.29145	NA	intron (NM_001286722, intron 1 of 17)	intron (NM_001286722, intron 1 of 17)	-15766	NM_198841	158293	Hs.350364	NM_198841	HPRD:12931	FAM120AOS	C9orf10OS	family with sequence similarity 120A opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_55293	chr2	120156373	120156576	+	14.29145	NA	Intergenic	Intergenic	31223	NM_001079863	1622	Hs.78888	NM_020548	HPRD:08832	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)	protein-coding
19-PTNLD28-TUMOR_peak_89801	chr6	144471193	144471772	+	14.29145	NA	promoter-TSS (NM_003764)	promoter-TSS (NM_003764)	-172	NM_003764	8676	Hs.118958	NM_003764		STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
19-PTNLD28-TUMOR_peak_69778	chr3	111835821	111836113	+	14.29145	NA	3' UTR (NM_024616, exon 6 of 6)	3' UTR (NM_024616, exon 6 of 6)	4319	NR_030292	693152		NR_030292		MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
19-PTNLD28-TUMOR_peak_37890	chr16	54376218	54376491	+	14.29145	NA	Intergenic	Intergenic	-55976	NM_024336	79191	Hs.499205	NM_024336	HPRD:17162	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_91121	chr7	5744170	5744330	+	14.29145	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	7291	NR_106934	102466203		NR_106934		MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
19-PTNLD28-TUMOR_peak_5819	chr1	117041743	117041920	+	14.29145	NA	Intergenic	Intergenic	71884	NR_026665	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_11166	chr1	236721309	236721665	+	14.29145	NA	intron (NM_018072, intron 36 of 44)	intron (NM_018072, intron 36 of 44)	-33679	NR_034040	100287902	Hs.677376	NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32971	chr15	33508479	33508758	+	14.29145	NA	Intergenic	Intergenic	-21684	NM_001277313	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_15446	chr10	105583624	105583933	+	14.29127	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	31386	NM_014631	9644	Hs.678727	NM_014631	HPRD:10228	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
19-PTNLD28-TUMOR_peak_47694	chr19	15217772	15218003	+	14.29127	NA	promoter-TSS (NM_033025)	promoter-TSS (NM_033025)	-288	NM_033025	85360	Hs.528701	NM_033025	HPRD:07830	SYDE1	7h3	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_7644	chr1	161058526	161058651	+	14.29127	NA	intron (NM_030916, intron 1 of 8)	intron (NM_030916, intron 1 of 8)	797	NM_030916	81607	Hs.492490	NM_030916	HPRD:17934	PVRL4	EDSS1|LNIR|PRR4|nectin-4	poliovirus receptor-related 4	protein-coding
19-PTNLD28-TUMOR_peak_6882	chr1	152430966	152431166	+	14.29025	NA	Intergenic	Intergenic	-44316	NM_016190	49860	Hs.242057	NM_016190	HPRD:12720	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
19-PTNLD28-TUMOR_peak_64205	chr22	17601307	17601514	+	14.29025	NA	exon (NM_031890, exon 1 of 1)	exon (NM_031890, exon 1 of 1)	803	NM_031890	27439	Hs.209577	NM_031890	HPRD:16704	CECR6	-	cat eye syndrome chromosome region, candidate 6	protein-coding
19-PTNLD28-TUMOR_peak_96212	chr7	149111836	149112398	+	14.29025	NA	Intergenic	Intergenic	45936	NM_015694	27153	Hs.38512	NM_015694	HPRD:13849	ZNF777	-	zinc finger protein 777	protein-coding
19-PTNLD28-TUMOR_peak_28757	chr13	97876015	97876191	+	14.29025	NA	intron (NM_144778, intron 1 of 8)	intron (NM_144778, intron 1 of 8)	1553	NM_144778	10150	Hs.657347	NM_144778	HPRD:09543	MBNL2	MBLL|MBLL39|PRO2032	muscleblind-like splicing regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_47352	chr19	11735492	11735714	+	14.29025	NA	Intergenic	HERVK3-int|LTR|ERVK	27368	NM_001290085	199692	Hs.526665	NM_145295	HPRD:18360	ZNF627	-	zinc finger protein 627	protein-coding
19-PTNLD28-TUMOR_peak_10187	chr1	221629090	221629222	+	14.28720	NA	Intergenic	AluY|SINE|Alu	-119518	NR_024236	400804	Hs.722626	NR_024236	HPRD:17386	C1orf140	-	uncharacterized LOC400804	ncRNA
19-PTNLD28-TUMOR_peak_79446	chr5	34684481	34684858	+	14.28720	NA	promoter-TSS (NM_001145521)	promoter-TSS (NM_001145521)	57	NM_001145525	26064	Hs.431400	NM_015577	HPRD:09416	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
19-PTNLD28-TUMOR_peak_7922	chr1	165798187	165798384	+	14.28620	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	1553	NM_012474	7371	Hs.458360	NM_012474		UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_26779	chr12	122212909	122213390	+	14.28112	NA	intron (NM_001080825, intron 11 of 11)	(GGGTG)n|Simple_repeat|Simple_repeat	18445	NM_019034	54509	Hs.644504	NM_019034	HPRD:15246	RHOF	ARHF|RIF	ras homolog family member F (in filopodia)	protein-coding
19-PTNLD28-TUMOR_peak_73507	chr3	195542421	195542725	+	14.28068	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-3729	NM_018406	4585	Hs.369646	NM_004532	HPRD:11829	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_51168	chr2	11891129	11891333	+	14.28068	NA	intron (NM_145693, intron 1 of 19)	intron (NM_145693, intron 1 of 19)	4509	NM_145693	23175	Hs.467740	NM_145693	HPRD:09271	LPIN1	PAP1	lipin 1	protein-coding
19-PTNLD28-TUMOR_peak_80616	chr5	72577360	72577549	+	14.27974	NA	Intergenic	Intergenic	108431	NM_153217	134288	Hs.508588	NM_153217	HPRD:14432	TMEM174	-	transmembrane protein 174	protein-coding
19-PTNLD28-TUMOR_peak_75824	chr4	78079411	78079585	+	14.27858	NA	intron (NM_004354, intron 1 of 7)	CpG	1141	NM_004354	901	Hs.740456	NM_004354	HPRD:04438	CCNG2	-	cyclin G2	protein-coding
19-PTNLD28-TUMOR_peak_36050	chr16	4968331	4968498	+	14.27858	NA	intron (NM_002705, intron 1 of 21)	intron (NM_002705, intron 1 of 21)	18722	NM_002705	5493	Hs.192233	NM_002705	HPRD:04187	PPL	-	periplakin	protein-coding
19-PTNLD28-TUMOR_peak_83500	chr5	157345066	157345195	+	14.27540	NA	Intergenic	LTR8|LTR|ERV1	-58947	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_3435	chr1	50717544	50717839	+	14.27540	NA	Intergenic	Intergenic	142403	NM_001294348	1996	Hs.213050	NM_021952	HPRD:01343	ELAVL4	HUD|PNEM	ELAV like neuron-specific RNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_25760	chr12	98884433	98884574	+	14.27540	NA	intron (NR_038383, intron 3 of 3)	AluJo|SINE|Alu	13130	NR_038383	643770	Hs.129589	NR_038383	ENSG00000245017	LOC643770	-	uncharacterized LOC643770	ncRNA
19-PTNLD28-TUMOR_peak_44542	chr18	10353894	10354044	+	14.27540	NA	Intergenic	Intergenic	60398	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
19-PTNLD28-TUMOR_peak_34156	chr15	68320550	68320805	+	14.27540	NA	Intergenic	L2a|LINE|L2	-25895	NM_016166	8554	Hs.162458	NM_016166	HPRD:16029	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT, 1	protein-coding
19-PTNLD28-TUMOR_peak_42225	chr17	48374845	48374986	+	14.27540	NA	Intergenic	Intergenic	-9699	NR_125805	103752589	Hs.612913	NR_125805		TMEM92-AS1	TCONS_00025237|lncRNA-508851	TMEM92 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_50096	chr19	52302688	52302902	+	14.27540	NA	intron (NM_002030, intron 1 of 1)	intron (NM_002030, intron 1 of 1)	4384	NM_002030	2359	Hs.445466	NM_002030	HPRD:00648	FPR3	FML2_HUMAN|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I	formyl peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_36471	chr16	15166238	15166366	+	14.27540	NA	intron (NM_018427, intron 12 of 17)	intron (NM_018427, intron 12 of 17)	-16366	NM_001270766	123803	Hs.592045	NM_173474	HPRD:17649	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
19-PTNLD28-TUMOR_peak_37808	chr16	51796078	51796255	+	14.27540	NA	promoter-TSS (NR_110916)	promoter-TSS (NR_110916)	-264	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LOC101927364	-	uncharacterized LOC101927364	ncRNA
19-PTNLD28-TUMOR_peak_66996	chr3	17454564	17454672	+	14.27540	NA	intron (NM_001134381, intron 5 of 23)	intron (NM_001134381, intron 5 of 23)	286894	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_65914	chr22	45680726	45680967	+	14.27540	NA	promoter-TSS (NM_001167574)	promoter-TSS (NM_001167574)	-22	NM_001167574	7380	Hs.632787	NM_006953	HPRD:15625	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
19-PTNLD28-TUMOR_peak_30447	chr14	55896812	55897108	+	14.27540	NA	intron (NM_199047, intron 4 of 6)	intron (NM_199047, intron 4 of 6)	10303	NM_199047	387332	Hs.528278	NM_199047		TBPL2	TBP2|TRF3	TATA box binding protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_1941	chr1	30265982	30266109	+	14.27540	NA	Intergenic	LTR41B|LTR|ERVL	244414	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_81202	chr5	94728413	94728585	+	14.27540	NA	exon (NM_152548, exon 2 of 10)	exon (NM_152548, exon 2 of 10)	1451	NM_152548	153643	Hs.276287	NM_152548	HPRD:08686	FAM81B	-	family with sequence similarity 81, member B	protein-coding
19-PTNLD28-TUMOR_peak_100177	chr8	116791605	116791753	+	14.27540	NA	Intergenic	Intergenic	-110424	NM_014112	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_94567	chr7	102532146	102532289	+	14.27540	NA	intron (NR_105043, intron 12 of 20)	intron (NR_105043, intron 12 of 20)	-21127	NM_005824	10234	Hs.567412	NM_005824	HPRD:10059	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
19-PTNLD28-TUMOR_peak_40831	chr17	27386461	27386670	+	14.27540	NA	Intergenic	L1MB2|LINE|L1	16062	NM_004740	9220	Hs.462590	NM_004740		TIAF1	MAJN|SPR210	TGFB1-induced anti-apoptotic factor 1	protein-coding
19-PTNLD28-TUMOR_peak_59864	chr20	13267320	13267707	+	14.27540	NA	intron (NM_080826, intron 3 of 5)	intron (NM_080826, intron 3 of 5)	-47179	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58592	chr2	223747345	223747621	+	14.27540	NA	intron (NM_004457, intron 1 of 16)	AluSc8|SINE|Alu	21751	NM_203372	2181	Hs.655772	NM_004457		ACSL3	ACS3|FACL3|PRO2194	acyl-CoA synthetase long-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_50007	chr19	51407548	51407664	+	14.27540	NA	Intergenic	AluYf4|SINE|Alu	6388	NM_004917	9622	Hs.218366	NM_004917	HPRD:04793	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein-related peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_39627	chr17	1493373	1493559	+	14.27540	NA	intron (NM_001284498, intron 9 of 14)	intron (NM_001284498, intron 9 of 14)	14862	NM_001284499	124935	Hs.160550	NM_152346	HPRD:15390	SLC43A2	LAT4	solute carrier family 43 (amino acid system L transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_75689	chr4	75486786	75487039	+	14.27540	NA	intron (NM_001657, intron 4 of 5).2	intron (NM_001657, intron 4 of 5).2	6321	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_91098	chr7	5602065	5602584	+	14.27143	NA	Intergenic	Intergenic	-30112	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_3031	chr1	44100480	44100681	+	14.26411	NA	Intergenic	Intergenic	-15217	NM_014663	9682	Hs.155983	NM_014663	HPRD:17168	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine (K)-specific demethylase 4A	protein-coding
19-PTNLD28-TUMOR_peak_36439	chr16	14787855	14788401	+	14.26411	NA	5' UTR (NM_003561, exon 1 of 4)	5' UTR (NM_003561, exon 1 of 4)	398	NM_003561	8399	Hs.567366	NM_003561	HPRD:04674	PLA2G10	GXPLA2|GXSPLA2|SPLA2	phospholipase A2, group X	protein-coding
19-PTNLD28-TUMOR_peak_66029	chr22	47150422	47150541	+	14.26411	NA	Intergenic	Intergenic	-8033	NM_001284303	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_9694	chr1	206120995	206121208	+	14.25964	NA	Intergenic	Intergenic	-17339	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_19484	chr11	67147077	67147328	+	14.25710	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-5554	NM_001166212	23529	Hs.502977	NM_013246	HPRD:09643	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin-like cytokine factor 1	protein-coding
19-PTNLD28-TUMOR_peak_39757	chr17	3716756	3716924	+	14.25488	NA	intron (NM_001114118, intron 12 of 12)	intron (NM_001114118, intron 12 of 12)	-12303	NM_002208	3682	Hs.513867	NM_002208	HPRD:05249	ITGAE	CD103|HUMINAE	integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_39350	chr16	88443934	88444070	+	14.25488	NA	Intergenic	Intergenic	-49877	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1	zinc finger protein 469	protein-coding
19-PTNLD28-TUMOR_peak_6065	chr1	121279805	121280211	+	14.25488	NA	intron (NR_003955, intron 1 of 7)	L1HS|LINE|L1	19098	NR_003955	647121	Hs.697682	NR_003955		EMBP1	-	embigin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_5161	chr1	100231986	100232263	+	14.25488	NA	promoter-TSS (NM_001013660)	promoter-TSS (NM_001013660)	-775	NM_001013660	391059	Hs.454779	NM_001013660	HPRD:18403	FRRS1	SDFR2|SDR2	ferric-chelate reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_22121	chr11	129685527	129685853	+	14.25488	NA	promoter-TSS (NM_138788)	promoter-TSS (NM_138788)	-51	NM_138788	120224	Hs.504301	NM_138788	HPRD:14020	TMEM45B	-	transmembrane protein 45B	protein-coding
19-PTNLD28-TUMOR_peak_66257	chr3	4797390	4797585	+	14.25224	NA	intron (NM_001168272, intron 43 of 60)	intron (NM_001168272, intron 43 of 60)	-4213	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_80551	chr5	71227976	71228373	+	14.25075	NA	Intergenic	Intergenic	-174944	NM_005909	4131	Hs.335079	NM_005909	HPRD:01139	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule-associated protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_6140	chr1	143880156	143880365	+	14.25012	NA	Intergenic	MIR|SINE|MIR	32883	NM_207418	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72, member D	protein-coding
19-PTNLD28-TUMOR_peak_5677	chr1	114521945	114522106	+	14.25012	NA	promoter-TSS (NM_001286353)	promoter-TSS (NM_001286353)	12	NM_001286353	56944	Hs.9315	NM_020190	HPRD:14878	OLFML3	HNOEL-iso|OLF44	olfactomedin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_34620	chr15	76488910	76489204	+	14.24813	NA	intron (NM_152335, intron 9 of 10)	intron (NM_152335, intron 9 of 10)	-15230	NR_120360	101929439	Hs.631721	NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
19-PTNLD28-TUMOR_peak_62047	chr20	52217755	52217916	+	14.24813	NA	Intergenic	Intergenic	-18199	NM_006526	7764	Hs.155040	NM_006526	HPRD:04272	ZNF217	ZABC1	zinc finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_103949	chr9	78990179	78990353	+	14.24813	NA	Intergenic	Intergenic	19178	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_37365	chr16	31519277	31519476	+	14.24813	NA	intron (NM_022744, intron 1 of 12)	intron (NM_022744, intron 1 of 12)	364	NM_022744	64755	Hs.9003	NM_022744	HPRD:07839	C16orf58	RUS	chromosome 16 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_81610	chr5	112823903	112824524	+	14.24622	NA	5' UTR (NM_001085377, exon 1 of 19)	5' UTR (NM_001085377, exon 1 of 19)	314	NM_001085377	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_17926	chr11	33744791	33745107	+	14.24622	NA	promoter-TSS (NM_001127223)	promoter-TSS (NM_001127223)	-451	NM_001127227	966	Hs.278573	NM_000611		CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule, complement regulatory protein	protein-coding
19-PTNLD28-TUMOR_peak_102989	chr9	37482341	37482512	+	14.24558	NA	Intergenic	Intergenic	-3506	NM_001282766	64425	Hs.591087	NM_022490	HPRD:15096	POLR1E	PAF53|PRAF1	polymerase (RNA) I polypeptide E, 53kDa	protein-coding
19-PTNLD28-TUMOR_peak_71703	chr3	150317714	150317863	+	14.24558	NA	Intergenic	MER41B|LTR|ERV1	-3278	NM_016275	51714	Hs.369052	NM_016275	HPRD:07446	SELT	-	selenoprotein T	protein-coding
19-PTNLD28-TUMOR_peak_6029	chr1	120791322	120791463	+	14.24530	NA	Intergenic	Intergenic	-47613	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_61787	chr20	48900930	48901091	+	14.24530	NA	Intergenic	L2b|LINE|L2	-8247	NR_034124	284751	Hs.282325	NM_001025463	HPRD:18771	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
19-PTNLD28-TUMOR_peak_53289	chr2	69534254	69534741	+	14.24530	NA	Intergenic	CpG	79889	NM_001244710	2673	Hs.580300	NM_002056	HPRD:00702	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
19-PTNLD28-TUMOR_peak_80256	chr5	64330225	64330415	+	14.24530	NA	Intergenic	Intergenic	265575	NM_001297644	10283	Hs.371372	NM_005869	HPRD:11541	CWC27	NY-CO-10|SDCCAG10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_17172	chr11	11641933	11642243	+	14.24530	NA	intron (NM_198516, intron 1 of 10)	intron (NM_198516, intron 1 of 10)	1473	NM_198516	374378	Hs.655152	NM_198516	HPRD:13564	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
19-PTNLD28-TUMOR_peak_70736	chr3	129403138	129403381	+	14.24334	NA	intron (NM_001017395, intron 3 of 5)	intron (NM_001017395, intron 3 of 5)	4316	NR_033361	23023	Hs.477547	NM_015008	HPRD:15518	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
19-PTNLD28-TUMOR_peak_22588	chr12	4225500	4225763	+	14.24334	NA	Intergenic	MIRb|SINE|MIR	-157271	NM_001759	894	Hs.376071	NM_001759	HPRD:00451	CCND2	KIAK0002	cyclin D2	protein-coding
19-PTNLD28-TUMOR_peak_48385	chr19	29452758	29452921	+	14.24334	NA	Intergenic	MER58C|DNA|hAT-Charlie	-3199	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
19-PTNLD28-TUMOR_peak_64531	chr22	21589708	21589859	+	14.24334	NA	Intergenic	Intergenic	-46931	NR_024583	29797	Hs.396963	NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_56171	chr2	147392337	147392719	+	14.24334	NA	Intergenic	Intergenic	47903	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_379	chr1	6497470	6497652	+	14.23750	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	-7605	NR_036218	100422975		NR_036218	miRBase:MI0015864	MIR4252	-	microRNA 4252	ncRNA
19-PTNLD28-TUMOR_peak_91118	chr7	5735118	5735404	+	14.23750	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-15169	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_103431	chr9	66519293	66519421	+	14.23745	NA	intron (NR_122076, intron 4 of 5)	intron (NR_122076, intron 4 of 5)	25088	NR_024496	442421	Hs.585349	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
19-PTNLD28-TUMOR_peak_101157	chr8	134679015	134679256	+	14.23732	NA	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-94952	NM_003033	6482	Hs.374257	NM_003033	HPRD:06219	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_20173	chr11	76518585	76518742	+	14.23732	NA	Intergenic	Intergenic	24378	NM_015516	25987	Hs.8361	NM_015516	HPRD:12152	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19-PTNLD28-TUMOR_peak_51602	chr2	25451696	25451873	+	14.23732	NA	Intergenic	Intergenic	23400	NM_153759	1788	Hs.515840	NM_022552	HPRD:04141	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_94236	chr7	99435690	99435831	+	14.23732	NA	intron (NM_022820, intron 2 of 12)	intron (NM_022820, intron 2 of 12)	10124	NM_057096	64816	Hs.306220	NM_022820	HPRD:05942	CYP3A43	-	cytochrome P450, family 3, subfamily A, polypeptide 43	protein-coding
19-PTNLD28-TUMOR_peak_72023	chr3	158635844	158636021	+	14.23732	NA	Intergenic	Intergenic	116217	NM_001167903	64747	Hs.58663	NM_022736	HPRD:07851	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94618	chr7	103917468	103917585	+	14.23732	NA	Intergenic	L1PA3|LINE|L1	-51578	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
19-PTNLD28-TUMOR_peak_49978	chr19	51142535	51142690	+	14.23732	NA	intron (NM_001160329, intron 1 of 10)	CpG	480	NM_001160328	84258	Hs.515554	NM_032298	HPRD:08977	SYT3	SytIII	synaptotagmin III	protein-coding
19-PTNLD28-TUMOR_peak_81060	chr5	87956735	87957172	+	14.23732	NA	intron (NR_015436, intron 3 of 4)	CpG	5804	NR_030741	407047		NR_030741	miRBase:MI0000467	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2	microRNA 9-2	ncRNA
19-PTNLD28-TUMOR_peak_39837	chr17	4785356	4785511	+	14.23732	NA	intron (NM_001024937, intron 4 of 31)	intron (NM_001024937, intron 4 of 31)	-17515	NM_001145536	100130311	Hs.579243	NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
19-PTNLD28-TUMOR_peak_11376	chr1	244107765	244108056	+	14.23732	NA	intron (NR_033883, intron 1 of 11)	intron (NR_033883, intron 1 of 11)	27206	NR_033883	339529	Hs.209374	NR_033883	ENSG00000226828	LOC339529	-	uncharacterized LOC339529	ncRNA
19-PTNLD28-TUMOR_peak_33116	chr15	39465267	39465438	+	14.23732	NA	Intergenic	Intergenic	-77533	NM_207445	400360	Hs.376109	NM_207445	HPRD:13437	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_40176	chr17	9960172	9960457	+	14.23732	NA	intron (NM_201433, intron 1 of 13)	SVA_C|Other|Other	-20250	NM_201432	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_55428	chr2	121978731	121978887	+	14.23732	NA	3' UTR (NM_014553, exon 15 of 15)	3' UTR (NM_014553, exon 15 of 15)	63969	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_11643	chr10	1332272	1332475	+	14.23732	NA	intron (NM_018702, intron 3 of 9)	intron (NM_018702, intron 3 of 9)	126665	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
19-PTNLD28-TUMOR_peak_59632	chr20	4593923	4594175	+	14.23480	NA	Intergenic	Intergenic	-72748	NM_001080121	5621	Hs.472010	NM_000311	HPRD:01453	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
19-PTNLD28-TUMOR_peak_15433	chr10	105475292	105475457	+	14.23480	NA	intron (NM_014631, intron 5 of 13)	intron (NM_014631, intron 5 of 13)	-31163	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2772	chr1	41239986	41240093	+	14.23480	NA	Intergenic	Intergenic	-9645	NM_172163	9132	Hs.473058	NM_004700	HPRD:04641	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel, KQT-like subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_4886	chr1	93375762	93375963	+	14.23480	NA	intron (NM_001252273, intron 1 of 4)	intron (NM_001252273, intron 1 of 4)	-33155	NM_001252271	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_109430	chrX	129194537	129194968	+	14.23480	NA	Intergenic	Intergenic	49723	NM_001421	2000	Hs.271940	NM_001421	HPRD:06499	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_24165	chr12	50288282	50288517	+	14.23480	NA	intron (NM_012306, intron 5 of 11)	intron (NM_012306, intron 5 of 11)	9361	NM_012306	23017	Hs.567424	NM_012306	HPRD:09184	FAIM2	LFG|LFG2|NGP35|NMP35|TMBIM2	Fas apoptotic inhibitory molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_19593	chr11	68222342	68222530	+	14.23480	NA	Intergenic	Intergenic	-5750	NM_001164163	55291	Hs.503022	NM_018312	HPRD:10703	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6, regulatory subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_5826	chr1	117123791	117124026	+	14.23480	NA	intron (NM_001007237, intron 9 of 10)	intron (NM_001007237, intron 9 of 10)	-10193	NM_001144822	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_34367	chr15	72448489	72448656	+	14.23480	NA	Intergenic	Intergenic	37941	NM_145204	123228	Hs.513002	NM_145204	HPRD:09784	SENP8	DEN1|NEDP1|PRSC2	SUMO/sentrin specific peptidase family member 8	protein-coding
19-PTNLD28-TUMOR_peak_99289	chr8	80941862	80942040	+	14.23480	NA	intron (NM_014018, intron 1 of 2)	intron (NM_014018, intron 1 of 2)	555	NM_014018	28957	Hs.521124	NM_014018	HPRD:10097	MRPS28	MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
19-PTNLD28-TUMOR_peak_68558	chr3	57789398	57789812	+	14.23480	NA	intron (NM_007159, intron 1 of 20)	intron (NM_007159, intron 1 of 20)	46431	NM_007159	7871	Hs.476432	NM_007159	HPRD:04079	SLMAP	SLAP	sarcolemma associated protein	protein-coding
19-PTNLD28-TUMOR_peak_67338	chr3	30327586	30327996	+	14.23480	NA	Intergenic	Intergenic	-320203	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_21433	chr11	117186742	117187121	+	14.23480	NA	promoter-TSS (NM_138971)	promoter-TSS (NM_138971)	41	NM_012104	23621	Hs.504003	NM_012104	HPRD:07255	BACE1	ASP2|BACE|HSPC104	beta-site APP-cleaving enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_59090	chr2	238418629	238418786	+	14.23480	NA	promoter-TSS (NR_106869)	promoter-TSS (NR_106869)	-867	NR_106869	102465486		NR_106869		MIR6811	hsa-mir-6811	microRNA 6811	ncRNA
19-PTNLD28-TUMOR_peak_46412	chr18	77390269	77390517	+	14.23480	NA	Intergenic	Intergenic	-49408	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_51075	chr2	10558033	10558148	+	14.23415	NA	intron (NM_134421, intron 3 of 5)	AluJr|SINE|Alu	28885	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
19-PTNLD28-TUMOR_peak_63180	chr21	33783890	33784140	+	14.23415	NA	promoter-TSS (NM_058187)	promoter-TSS (NM_058187)	-730	NM_001286556	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_86632	chr6	31627596	31627958	+	14.22804	NA	5' UTR (NM_021184, exon 1 of 1).2	5' UTR (NM_021184, exon 1 of 1).2	772	NM_021184	57827	Hs.247323	NM_021184	HPRD:12883	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_34596	chr15	76013555	76013754	+	14.22455	NA	Intergenic	Intergenic	-2665	NM_175881	161753	Hs.144348	NM_175881	HPRD:11360	ODF3L1	-	outer dense fiber of sperm tails 3-like 1	protein-coding
19-PTNLD28-TUMOR_peak_588	chr1	9309968	9310409	+	14.22455	NA	intron (NM_001282587, intron 3 of 4)	intron (NM_001282587, intron 3 of 4)	10285	NM_001282587	9563	Hs.463511	NM_004285	HPRD:00681	H6PD	CORTRD1|G6PDH|GDH	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding
19-PTNLD28-TUMOR_peak_74022	chr4	3829285	3829514	+	14.22066	NA	Intergenic	Intergenic	61103	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_61837	chr20	49252337	49252713	+	14.22066	NA	intron (NM_001290268, intron 1 of 21)	intron (NM_001290268, intron 1 of 21)	930	NM_080829	140876	Hs.372578	NM_080829	HPRD:12757	FAM65C	C20orf175|C20orf176|dJ530I15.2|dJ530I15.3	family with sequence similarity 65, member C	protein-coding
19-PTNLD28-TUMOR_peak_1365	chr1	22260328	22260552	+	14.21506	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	3350	NM_001291860	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_59340	chr2	242823432	242823687	+	14.21339	NA	promoter-TSS (NR_110220)	promoter-TSS (NR_110220)	45	NR_110220	101927289	Hs.130180	NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
19-PTNLD28-TUMOR_peak_37277	chr16	30816823	30817063	+	14.21339	NA	Intergenic	CpG	-18420	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
19-PTNLD28-TUMOR_peak_63032	chr21	29534954	29535112	+	14.21094	NA	Intergenic	HERVH-int|LTR|ERV1	149351	NR_027246	246705	Hs.505079	NM_145180	HPRD:10778	LINC00314	C21orf94|NCRNA00314	long intergenic non-protein coding RNA 314	ncRNA
19-PTNLD28-TUMOR_peak_39050	chr16	84026771	84027060	+	14.21094	NA	intron (NM_019065, intron 6 of 12)	intron (NM_019065, intron 6 of 12)	24678	NM_019065	54550	Hs.140950	NM_019065	HPRD:13263	NECAB2	EFCBP2	N-terminal EF-hand calcium binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_79741	chr5	43514651	43514782	+	14.21094	NA	intron (NM_198566, intron 1 of 12)	intron (NM_198566, intron 1 of 12)	557	NM_198566	375444	Hs.661641	NM_198566	HPRD:13407	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
19-PTNLD28-TUMOR_peak_39910	chr17	6454814	6454948	+	14.21094	NA	intron (NM_031220, intron 1 of 19)	intron (NM_031220, intron 1 of 19)	4996	NM_001165966	83394	Hs.183983	NM_031220	HPRD:07498	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
19-PTNLD28-TUMOR_peak_13941	chr10	68594714	68594870	+	14.21053	NA	intron (NM_013266, intron 7 of 17)	intron (NM_013266, intron 7 of 17)	-91000	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_43339	chr17	72756161	72756378	+	14.21053	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	11517	NR_037409	100500847		NR_037409	miRBase:MI0016005	MIR3615	-	microRNA 3615	ncRNA
19-PTNLD28-TUMOR_peak_53892	chr2	86623487	86623812	+	14.20525	NA	Intergenic	Intergenic	-44622	NM_018433	55818	Hs.557425	NM_018433	HPRD:11054	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine (K)-specific demethylase 3A	protein-coding
19-PTNLD28-TUMOR_peak_55177	chr2	115919522	115919737	+	14.20525	NA	promoter-TSS (NR_036580)	intron (NM_001178034, intron 1 of 25)	-55	NM_001004360	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_48497	chr19	32715599	32715748	+	14.20378	NA	Intergenic	CpG	-118851	NR_110694	101927411	Hs.515337	NR_110694	ENSG00000267204	LOC101927411	-	uncharacterized LOC101927411	ncRNA
19-PTNLD28-TUMOR_peak_57421	chr2	190365550	190365827	+	14.20378	NA	Intergenic	Intergenic	59529	NM_032168	84128	Hs.399984	NM_032168	HPRD:07775	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
19-PTNLD28-TUMOR_peak_94421	chr7	101030092	101030411	+	14.20378	NA	intron (NM_133457, intron 1 of 12)	intron (NM_133457, intron 1 of 12)	24150	NM_001278563	136227	Hs.654854	NM_133457	HPRD:16405	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen, type XXVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_34045	chr15	66232270	66232467	+	14.20378	NA	intron (NM_032445, intron 10 of 22)	L2a|LINE|L2	70571	NM_004663	8766	Hs.321541	NM_004663	HPRD:05715	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_32795	chr15	30280969	30281271	+	14.20378	NA	Intergenic	Intergenic	-20118	NM_001301025	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_93653	chr7	80378687	80378881	+	14.20378	NA	intron (NM_006379, intron 16 of 17)	MIRb|SINE|MIR	102815	NM_001289908	948	Hs.120949	NM_000072	HPRD:01430	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_81839	chr5	123498511	123498753	+	14.20378	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	275581	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_11060	chr1	235147646	235147962	+	14.20378	NA	Intergenic	Intergenic	143448	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_40845	chr17	27482426	27482550	+	14.20378	NA	intron (NM_203318, intron 2 of 40)	intron (NM_203318, intron 2 of 40)	24919	NM_078471	399687	Hs.462590	NM_078471	HPRD:10106	MYO18A	MYSPDZ|SPR210	myosin XVIIIA	protein-coding
19-PTNLD28-TUMOR_peak_100306	chr8	119779158	119779431	+	14.20378	NA	Intergenic	L2|LINE|L2	-145060	NR_109794	401474	Hs.359393	NM_207506	HPRD:15293	SAMD12	-	sterile alpha motif domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_107958	chrX	39121067	39121268	+	14.20378	NA	Intergenic	Intergenic	65449	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
19-PTNLD28-TUMOR_peak_29112	chr13	113242415	113242627	+	14.20378	NA	promoter-TSS (NM_001286278)	promoter-TSS (NM_001286278)	-22	NM_001286278	10426	Hs.224152	NM_006322	HPRD:10289	TUBGCP3	104p|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin, gamma complex associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_12064	chr10	12792790	12793276	+	14.20378	NA	intron (NM_020397, intron 3 of 9)	AluSx|SINE|Alu	-82100	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	ncRNA
19-PTNLD28-TUMOR_peak_45899	chr18	55455972	55456129	+	14.20378	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	14277	NM_005603	5205	Hs.216623	NM_005603	HPRD:03867	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_70013	chr3	118603623	118603760	+	14.20378	NA	Intergenic	Intergenic	-58232	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36097	chr16	7455317	7455516	+	14.20378	NA	intron (NM_145893, intron 1 of 13)	intron (NM_145893, intron 1 of 13)	72665	NM_145893	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_55887	chr2	134855338	134855522	+	14.20378	NA	Intergenic	MER92B|LTR|ERV1	-29266	NR_037450	100500878		NR_037450	miRBase:MI0016080	MIR3679	-	microRNA 3679	ncRNA
19-PTNLD28-TUMOR_peak_36951	chr16	25236644	25236838	+	14.20378	NA	intron (NM_001169, intron 4 of 5)	intron (NM_001169, intron 4 of 5)	8456	NM_001169	343	Hs.176658	NM_001169	HPRD:04778	AQP8	AQP-8	aquaporin 8	protein-coding
19-PTNLD28-TUMOR_peak_18060	chr11	35507335	35507487	+	14.20378	NA	intron (NM_001001991, intron 3 of 10)	intron (NM_001001991, intron 3 of 10)	40168	NM_015430	25891	Hs.55044	NM_015430	HPRD:07104	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
19-PTNLD28-TUMOR_peak_28913	chr13	104003336	104003622	+	14.20378	NA	Intergenic	Intergenic	-68631	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_3581	chr1	53928420	53928596	+	14.20378	NA	intron (NM_033067, intron 2 of 3)	intron (NM_033067, intron 2 of 3)	3436	NM_033067	63948	Hs.131654	NM_033067	HPRD:16828	DMRTB1	-	DMRT-like family B with proline-rich C-terminal, 1	protein-coding
19-PTNLD28-TUMOR_peak_4924	chr1	93985074	93985268	+	14.20378	NA	intron (NM_001024948, intron 2 of 13)	Charlie7a|DNA|hAT-Charlie	71483	NM_001024948	54874	Hs.134060	NM_017737	HPRD:12317	FNBP1L	C1orf39|TOCA1	formin binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_18035	chr11	34999085	34999378	+	14.20378	NA	intron (NM_001135024, intron 7 of 10)	Charlie7a|DNA|hAT-Charlie	35847	NR_039836	100616437		NR_039836		MIR1343	-	microRNA 1343	ncRNA
19-PTNLD28-TUMOR_peak_27822	chr13	35515999	35516249	+	14.20378	NA	promoter-TSS (NM_015678)	promoter-TSS (NM_015678)	-300	NM_015678	26960	Hs.491172	NM_015678	HPRD:05352	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
19-PTNLD28-TUMOR_peak_86218	chr6	27205192	27205430	+	14.20378	NA	Intergenic	Intergenic	-10191	NM_005865	10279	Hs.274407	NM_005865	HPRD:06205	PRSS16	TSSP	protease, serine, 16 (thymus)	protein-coding
19-PTNLD28-TUMOR_peak_78737	chr5	4721001	4721200	+	14.20378	NA	Intergenic	L2|LINE|L2	-52494	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_66398	chr3	8809566	8809733	+	14.20058	NA	exon (NM_000916, exon 3 of 4)	exon (NM_000916, exon 3 of 4)	1651	NM_000916	5021	Hs.2820	NM_000916	HPRD:01328	OXTR	OT-R	oxytocin receptor	protein-coding
19-PTNLD28-TUMOR_peak_41515	chr17	40463679	40463840	+	14.19675	NA	3' UTR (NM_003152, exon 20 of 20)	3' UTR (NM_003152, exon 20 of 20)	23685	NM_001288720	6776	Hs.437058	NM_003152	HPRD:03301	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
19-PTNLD28-TUMOR_peak_21173	chr11	112148412	112148662	+	14.19675	NA	Intergenic	AluY|SINE|Alu	-16954	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_12752	chr10	30927130	30927291	+	14.19675	NA	Intergenic	Intergenic	-8563	NM_183058	119180	Hs.522610	NM_183058	HPRD:14337	LYZL2	-	lysozyme-like 2	protein-coding
19-PTNLD28-TUMOR_peak_29148	chr13	113655898	113656109	+	14.19675	NA	promoter-TSS (NM_024979)	promoter-TSS (NM_024979)	-25	NM_024979	23263	Hs.170422	NM_024979	HPRD:14371	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence-like	protein-coding
19-PTNLD28-TUMOR_peak_4928	chr1	94050653	94050866	+	14.19675	NA	intron (NM_001261408, intron 7 of 13)	intron (NM_001261408, intron 7 of 13)	-6766	NR_034091	100129046	Hs.729244	NR_034091		LOC100129046	-	uncharacterized LOC100129046	ncRNA
19-PTNLD28-TUMOR_peak_57702	chr2	200328247	200328377	+	14.19675	NA	intron (NM_015265, intron 1 of 11)	CpG-15850	1519	NM_001172517	23314	Hs.516617	NM_015265	HPRD:12178	SATB2	GLSS	SATB homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_21174	chr11	112148776	112148947	+	14.19675	NA	Intergenic	MIRb|SINE|MIR	-17278	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_50157	chr19	53238695	53238862	+	14.19306	NA	promoter-TSS (NM_001161499)	promoter-TSS (NM_001161499)	-471	NM_001161499	81856	Hs.143951	NM_030972	HPRD:15872	ZNF611	-	zinc finger protein 611	protein-coding
19-PTNLD28-TUMOR_peak_3026	chr1	44043791	44044195	+	14.19126	NA	intron (NM_130440, intron 6 of 32)	intron (NM_130440, intron 6 of 32)	47446	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_48718	chr19	36249389	36249548	+	14.18740	NA	intron (NM_001039887, intron 1 of 11)	intron (NM_001039887, intron 1 of 11)	424	NM_001039887	148137	Hs.527982	NM_144692	HPRD:14079	PROSER3	C19orf55	proline and serine rich 3	protein-coding
19-PTNLD28-TUMOR_peak_96627	chr7	155283134	155283528	+	14.18502	NA	Intergenic	Intergenic	32507	NM_001427	2020	Hs.134989	NM_001427	HPRD:08836	EN2	-	engrailed homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_59327	chr2	242674826	242675050	+	14.18502	NA	intron (NR_109778, intron 2 of 7)	CpG-16253	944	NM_152783	728294	Hs.516813	NM_152783	HPRD:14502	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_65290	chr22	36018524	36018906	+	14.18502	NA	intron (NM_203377, intron 1 of 3)	intron (NM_203377, intron 1 of 3)	686	NM_203377	4151	Hs.517586	NM_005368	HPRD:01170	MB	PVALB|myoglobgin	myoglobin	protein-coding
19-PTNLD28-TUMOR_peak_81621	chr5	113255134	113255433	+	14.18502	NA	Intergenic	Intergenic	405892	NM_022828	64848	Hs.231942	NM_022828	HPRD:11690	YTHDC2	CAHL	YTH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_16921	chr11	7694663	7694900	+	14.18502	NA	promoter-TSS (NM_016229)	promoter-TSS (NM_016229)	40	NM_016229	51700	Hs.414362	NM_016229	HPRD:06435	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_48288	chr19	23732219	23732642	+	14.18215	NA	Intergenic	LTR7C|LTR|ERV1	137587	NM_138330	171392	Hs.264345	NM_138330	HPRD:18193	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
19-PTNLD28-TUMOR_peak_1790	chr1	27883805	27884074	+	14.18215	NA	intron (NM_001029882, intron 3 of 6)	intron (NM_001029882, intron 3 of 6)	46066	NM_001029882	27245	Hs.469280	NM_001029882	HPRD:10885	AHDC1	MRD25	AT hook, DNA binding motif, containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59688	chr20	6103425	6104238	+	14.17816	NA	5' UTR (NM_017671, exon 1 of 15)	5' UTR (NM_017671, exon 1 of 15)	360	NM_017671	55612	Hs.472054	NM_017671	HPRD:06388	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	fermitin family member 1	protein-coding
19-PTNLD28-TUMOR_peak_94484	chr7	101777826	101778023	+	14.17816	NA	intron (NM_181552, intron 8 of 23)	AluJb|SINE|Alu	-150429	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_75889	chr4	79573610	79573753	+	14.17816	NA	intron (NR_038306, intron 2 of 2)	intron (NR_038306, intron 2 of 2)	6533	NR_038305	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_88530	chr6	83268160	83268400	+	14.17816	NA	Intergenic	L1PA2|LINE|L1	194319	NM_001166392	7162	Hs.82128	NM_006670	HPRD:01837	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_34996	chr15	85438283	85438522	+	14.17816	NA	intron (NM_001287761, intron 5 of 14)	intron (NM_001287761, intron 5 of 14)	10510	NM_001287762	9154	Hs.459187	NM_004213	HPRD:07068	SLC28A1	CNT1|HCNT1	solute carrier family 28 (concentrative nucleoside transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_70140	chr3	122075405	122075519	+	14.17816	NA	Intergenic	Intergenic	26612	NM_001017928	131076	Hs.220594	NM_001017928	HPRD:18548	CCDC58	-	coiled-coil domain containing 58	protein-coding
19-PTNLD28-TUMOR_peak_58268	chr2	216660784	216661212	+	14.17816	NA	intron (NR_037195, intron 1 of 9)	LTR33|LTR|ERVL	47261	NR_037195	646324	Hs.655713	NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
19-PTNLD28-TUMOR_peak_56543	chr2	159855211	159855493	+	14.17816	NA	intron (NM_001145909, intron 1 of 26)	intron (NM_001145909, intron 1 of 26)	30206	NM_033394	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52521	chr2	45837728	45838063	+	14.17697	NA	intron (NM_018079, intron 1 of 20)	intron (NM_018079, intron 1 of 20)	538	NM_018079	55133	Hs.14229	NM_018079	HPRD:07669	SRBD1	-	S1 RNA binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_7097	chr1	154687182	154687375	+	14.17697	NA	intron (NM_002249, intron 6 of 7)	intron (NM_002249, intron 6 of 7)	-86822	NM_001025107	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_62016	chr20	51780119	51780290	+	14.17697	NA	intron (NM_173485, intron 1 of 2)	MLT1F2|LTR|ERVL-MaLR	-21618	NM_001193421	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_17075	chr11	10325483	10325832	+	14.17476	NA	promoter-TSS (NM_001124)	promoter-TSS (NM_001124)	-985	NM_001124	133	Hs.441047	NM_001124		ADM	AM	adrenomedullin	protein-coding
19-PTNLD28-TUMOR_peak_51961	chr2	30630940	30631070	+	14.17443	NA	Intergenic	Intergenic	-39118	NM_182551	253558	Hs.468048	NM_182551	HPRD:17458	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_103072	chr9	38681752	38681980	+	14.17443	NA	Intergenic	Intergenic	60781	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_22215	chr11	130700580	130700801	+	14.17443	NA	Intergenic	Intergenic	31315	NR_125383	100507431	Hs.375101	NR_125383		LOC100507431	-	uncharacterized LOC100507431	ncRNA
19-PTNLD28-TUMOR_peak_85032	chr6	5182329	5182544	+	14.17443	NA	intron (NM_001164841, intron 2 of 3)	intron (NM_001164841, intron 2 of 3)	-33880	NR_037462	100500900		NR_037462		MIR3691	-	microRNA 3691	ncRNA
19-PTNLD28-TUMOR_peak_21484	chr11	118122808	118123177	+	14.17443	NA	promoter-TSS (NM_198275)	promoter-TSS (NM_198275)	91	NR_104404	196264	Hs.15396	NM_198275		MPZL3	-	myelin protein zero-like 3	protein-coding
19-PTNLD28-TUMOR_peak_80261	chr5	64459958	64460070	+	14.17443	NA	intron (NM_197941, intron 24 of 24)	L1PA2|LINE|L1	317690	NM_197941	11174	Hs.482291	NM_197941	HPRD:05421	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	protein-coding
19-PTNLD28-TUMOR_peak_102370	chr9	19155611	19155837	+	14.17443	NA	Intergenic	Intergenic	-28120	NM_001122	123	Hs.3416	NM_001122	HPRD:00057	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
19-PTNLD28-TUMOR_peak_55249	chr2	119622835	119622951	+	14.17443	NA	Intergenic	Intergenic	-17134	NM_001426	2019	Hs.271977	NM_001426	HPRD:08835	EN1	-	engrailed homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_82090	chr5	131657961	131658223	+	14.17443	NA	intron (NM_003059, intron 4 of 9)	intron (NM_003059, intron 4 of 9)	27947	NM_003059	6583	Hs.310591	NM_003059	HPRD:09171	SLC22A4	OCTN1	solute carrier family 22 (organic cation/zwitterion transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_3691	chr1	55437159	55437425	+	14.17443	NA	Intergenic	Intergenic	-9173	NM_182532	199964	Hs.663950	NM_182532	HPRD:14121	TMEM61	-	transmembrane protein 61	protein-coding
19-PTNLD28-TUMOR_peak_75026	chr4	40296256	40296369	+	14.17443	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-12890	NR_121641	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_51234	chr2	13064077	13064278	+	14.17443	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	82961	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
19-PTNLD28-TUMOR_peak_95961	chr7	142273862	142273963	+	14.17443	NA	Intergenic	Intergenic	-100219	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_43019	chr17	64724176	64724347	+	14.17443	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-58929	NR_030364	693219		NR_030364		MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
19-PTNLD28-TUMOR_peak_5960	chr1	120092368	120092500	+	14.17443	NA	Intergenic	Intergenic	-14069	NR_033781	128102	Hs.681806	NR_033781		HSD3BP4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_90239	chr6	158123471	158123671	+	14.17443	NA	Intergenic	HERVH-int|LTR|ERV1	-120632	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_47620	chr19	14399807	14399926	+	14.17443	NA	Intergenic	Intergenic	-82869	NM_014921	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_60247	chr20	24130703	24130873	+	14.17443	NA	Intergenic	Intergenic	-49615	NR_040102	400839	Hs.651965	NR_040102	ENSG00000230133	FLJ33581	-	uncharacterized LOC400839	ncRNA
19-PTNLD28-TUMOR_peak_53373	chr2	70834448	70834707	+	14.17443	NA	Intergenic	Intergenic	-53430	NM_001099691	7039	Hs.170009	NM_003236	HPRD:07522	TGFA	TFGA	transforming growth factor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_1148	chr1	17417505	17417651	+	14.17443	NA	intron (NM_007365, intron 6 of 15)	intron (NM_007365, intron 6 of 15)	28370	NM_007365	11240	Hs.33455	NM_007365	HPRD:06396	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase, type II	protein-coding
19-PTNLD28-TUMOR_peak_42677	chr17	57929381	57929668	+	14.17231	NA	Intergenic	Intergenic	10897	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
19-PTNLD28-TUMOR_peak_103058	chr9	38381113	38381371	+	14.16286	NA	Intergenic	Intergenic	-11419	NM_000692	219	Hs.436219	NM_000692	HPRD:00005	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
19-PTNLD28-TUMOR_peak_60805	chr20	35179296	35179606	+	14.16286	NA	intron (NR_109939, intron 2 of 4)	intron (NR_109939, intron 2 of 4)	9564	NM_181526	10398	Hs.504687	NM_006097	HPRD:17619	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	myosin, light chain 9, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_83360	chr5	153569850	153570052	+	14.16286	NA	promoter-TSS (NM_198321)	promoter-TSS (NM_198321)	-344	NM_198321	55568	Hs.631797	NM_017540	HPRD:12157	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_96999	chr8	7896306	7896437	+	14.16286	NA	Intergenic	HERVE-int|LTR|ERV1	-41328	NR_003668	641517	Hs.616079	NM_001037380	ENSG00000206034	DEFB109P1B	DEF109P1B|DEFB109	defensin, beta 109, pseudogene 1B	pseudo
19-PTNLD28-TUMOR_peak_92893	chr7	65112578	65112886	+	14.16286	NA	promoter-TSS (NR_027392)	promoter-TSS (NR_027392)	-35	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
19-PTNLD28-TUMOR_peak_18971	chr11	62203412	62203959	+	14.16286	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	17178	NM_003357	7356	Hs.523732	NM_003357	HPRD:01884	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
19-PTNLD28-TUMOR_peak_31152	chr14	71671042	71671227	+	14.16286	NA	Intergenic	L2c|LINE|L2	-193920	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_42532	chr17	56012814	56013125	+	14.16061	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	19715	NM_001271875	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74555	chr4	13485311	13485710	+	14.15294	NA	intron (NM_001017979, intron 1 of 6)	intron (NM_001017979, intron 1 of 6)	479	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_86393	chr6	29685714	29685880	+	14.15294	NA	Intergenic	SVA_E|Other|Other	-5320	NM_018950	3134	Hs.519972	NM_018950	HPRD:00884	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
19-PTNLD28-TUMOR_peak_90163	chr6	155495896	155496088	+	14.15294	NA	intron (NM_012454, intron 8 of 25)	intron (NM_012454, intron 8 of 25)	-42105	NM_001010927	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_55666	chr2	130680504	130680649	+	14.15294	NA	promoter-TSS (NR_110285)	promoter-TSS (NR_110285)	-174	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_94176	chr7	98468001	98468148	+	14.15294	NA	promoter-TSS (NM_001134451)	promoter-TSS (NM_001134451)	-401	NM_152913	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_85599	chr6	15514770	15514904	+	14.15294	NA	intron (NM_001267040, intron 16 of 17)	intron (NM_001267040, intron 16 of 17)	148452	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_103268	chr9	43915302	43915517	+	14.15038	NA	exon (NM_001201380, exon 22 of 24)	exon (NM_001201380, exon 22 of 24)	230213	NR_111893	643827	Hs.521495	NM_001012280		CNTNAP3P2	-	contactin associated protein-like 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_108977	chrX	100872314	100872465	+	14.15038	NA	intron (NM_001184768, intron 2 of 3)	intron (NM_001184768, intron 2 of 3)	602	NM_001009584	54470	Hs.83530	NM_019007	HPRD:06536	ARMCX6	GASP10	armadillo repeat containing, X-linked 6	protein-coding
19-PTNLD28-TUMOR_peak_67984	chr3	47447669	47448154	+	14.15038	NA	intron (NM_015466, intron 7 of 24)	intron (NM_015466, intron 7 of 24)	25420	NM_015466	25930	Hs.25524	NM_015466	HPRD:05959	PTPN23	HD-PTP|HDPTP|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding
19-PTNLD28-TUMOR_peak_97682	chr8	23344610	23344866	+	14.15038	NA	Intergenic	Intergenic	-29494	NM_001128930	9583	Hs.444389	NM_004901	HPRD:09618	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
19-PTNLD28-TUMOR_peak_45510	chr18	44002047	44002168	+	14.15038	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	87920	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_38136	chr16	58535092	58535707	+	14.15038	NA	intron (NM_001242833, intron 2 of 14)	CpG	1352	NM_001242836	65009	Hs.322430	NM_020465	HPRD:14817	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
19-PTNLD28-TUMOR_peak_96637	chr7	155399136	155399432	+	14.15038	NA	Intergenic	L1MC4|LINE|L1	-37919	NM_053043	155435	Hs.591815	NM_053043	HPRD:17310	RBM33	PRR8	RNA binding motif protein 33	protein-coding
19-PTNLD28-TUMOR_peak_43746	chr17	76358678	76358964	+	14.14622	NA	non-coding (NR_110847, exon 2 of 5)	non-coding (NR_110847, exon 2 of 5)	1738	NR_110846	101928674	Hs.637297	NR_110845		LOC101928674	-	uncharacterized LOC101928674	ncRNA
19-PTNLD28-TUMOR_peak_77468	chr4	147442116	147442255	+	14.14594	NA	intron (NM_001029998, intron 1 of 11)	intron (NM_001029998, intron 1 of 11)	938	NM_001300842	84068	Hs.659209	NM_032128	HPRD:13177	SLC10A7	C4orf13|P7	solute carrier family 10, member 7	protein-coding
19-PTNLD28-TUMOR_peak_30190	chr14	50442046	50442357	+	14.14388	NA	Intergenic	Intergenic	9084	NR_106724	102464828		NR_106724		MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
19-PTNLD28-TUMOR_peak_41648	chr17	41742942	41743358	+	14.14388	NA	Intergenic	Intergenic	-3888	NM_001040002	4222	Hs.438	NM_004527	HPRD:02537	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_85425	chr6	12492739	12492855	+	14.14308	NA	Intergenic	Intergenic	-100211	NR_103808	100887744		NR_103808		RNU6-48P	RNU6-48	RNA, U6 small nuclear 48, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_26574	chr12	118500186	118500485	+	14.14067	NA	promoter-TSS (NM_001278557)	promoter-TSS (NM_001278557)	-356	NM_001278557	55884	Hs.506985	NM_018639	HPRD:18305	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
19-PTNLD28-TUMOR_peak_6360	chr1	145963232	145963663	+	14.14067	NA	intron (NR_104217, intron 2 of 17).2	CpG	-17970	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_65677	chr22	41764074	41764200	+	14.14067	NA	intron (NM_001145398, intron 1 of 3)	intron (NM_001145398, intron 1 of 3)	800	NM_001145398	7008	Hs.181159	NM_003216	HPRD:01783	TEF	-	thyrotrophic embryonic factor	protein-coding
19-PTNLD28-TUMOR_peak_97761	chr8	26152466	26152632	+	14.14067	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	1817	NM_001177591	5520	Hs.146339	NM_002717	HPRD:09223	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
19-PTNLD28-TUMOR_peak_64472	chr22	20911596	20911813	+	14.13320	NA	intron (NM_001293237, intron 5 of 16)	intron (NM_001293237, intron 5 of 16)	49369	NM_001293237	51586	Hs.517421	NM_015889	HPRD:12117	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
19-PTNLD28-TUMOR_peak_60173	chr20	22698191	22698360	+	14.13320	NA	Intergenic	Intergenic	-110120	NR_109883	101929685	Hs.563018	NR_109883		LINC01384	-	long intergenic non-protein coding RNA 1384	ncRNA
19-PTNLD28-TUMOR_peak_82603	chr5	139570220	139570407	+	14.13320	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	15660	NM_032412	84418	Hs.529798	NM_032412		CYSTM1	C5orf32	cysteine-rich transmembrane module containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73117	chr3	189034108	189034351	+	14.13320	NA	intron (NM_198485, intron 5 of 5)	intron (NM_198485, intron 5 of 5)	-75846	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_110078	chrY	1480168	1480348	+	14.13320	NA	intron (NR_026711, intron 3 of 5).2	intron (NR_026711, intron 3 of 5).2	10834	NR_026711	80161	Hs.521856	NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80754	chr5	74944599	74944841	+	14.13320	NA	intron (NM_001276713, intron 7 of 13)	intron (NM_001276713, intron 7 of 13)	37419	NM_001276713	728780	Hs.370455	NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_72725	chr3	183633487	183633748	+	14.13320	NA	Intergenic	Intergenic	-30924	NM_001037639	55486	Hs.478469	NM_018622	HPRD:08484	PARL	PSARL|PSARL1|PSENIP2|RHBDS1	presenilin associated, rhomboid-like	protein-coding
19-PTNLD28-TUMOR_peak_82147	chr5	132315367	132315547	+	14.13320	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-16103	NM_014423	27125	Hs.519313	NM_014423	HPRD:09187	AFF4	AF5Q31|MCEF	AF4/FMR2 family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_75683	chr4	75317029	75317282	+	14.13320	NA	intron (NM_001657, intron 4 of 5)	intron (NM_001657, intron 4 of 5)	6340	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_103129	chr9	40181216	40181354	+	14.13320	NA	Intergenic	Intergenic	280939	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_23709	chr12	33165252	33165523	+	14.13320	NA	Intergenic	MER41B|LTR|ERV1	-115607	NM_001005242	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_25579	chr12	93113487	93113740	+	14.13320	NA	Intergenic	Intergenic	-16652	NM_001004330	440107	Hs.591013	NM_001004330	HPRD:17004	PLEKHG7	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 7	protein-coding
19-PTNLD28-TUMOR_peak_68096	chr3	49095522	49095833	+	14.13320	NA	intron (NM_198880, intron 2 of 9)	AluSx|SINE|Alu	-28802	NM_000884	3615	Hs.654400	NM_000884	HPRD:00895	IMPDH2	IMPD2|IMPDH-II	IMP (inosine 5'-monophosphate) dehydrogenase 2	protein-coding
19-PTNLD28-TUMOR_peak_107342	chrX	1530168	1530348	+	14.13320	NA	intron (NR_026711, intron 3 of 5)	intron (NR_026711, intron 3 of 5)	10834	NR_026711	80161	Hs.521856	NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105774	chr9	122174881	122175134	+	14.13320	NA	Intergenic	Intergenic	-43268	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_84539	chr5	179851192	179851369	+	14.13320	NA	Intergenic	AluJo|SINE|Alu	-70137	NM_015455	57472	Hs.608380	NM_015455	HPRD:12341	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex, subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_101556	chr8	143799594	143799831	+	14.13320	NA	intron (NR_038925, intron 1 of 2)	LTR50|LTR|ERVL	8679	NR_038925	100288181	Hs.716823	NR_038925	ENSG00000253741	LOC100288181	-	uncharacterized LOC100288181	ncRNA
19-PTNLD28-TUMOR_peak_3266	chr1	47264570	47264811	+	14.13077	NA	promoter-TSS (NM_000779)	promoter-TSS (NM_000779)	20	NM_000779	1580	Hs.436317	NM_000779	HPRD:00491	CYP4B1	CYPIVB1|P-450HP	cytochrome P450, family 4, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_65119	chr22	31480865	31481113	+	14.13077	NA	promoter-TSS (NM_001207018)	promoter-TSS (NM_001207018)	7	NM_001207018	6525	Hs.149098	NM_006932	HPRD:03675	SMTN	-	smoothelin	protein-coding
19-PTNLD28-TUMOR_peak_43581	chr17	74667210	74667528	+	14.13077	NA	Intergenic	Intergenic	-27449	NR_110309	55808	Hs.105352	NM_018414	HPRD:15340	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_58371	chr2	218764310	218764497	+	14.13077	NA	TTS (NR_106867)	TTS (NR_106867)	948	NR_106867	102465485		NR_106867		MIR6809	hsa-mir-6809	microRNA 6809	ncRNA
19-PTNLD28-TUMOR_peak_107101	chrUn_gl000220	52059	52975	+	14.13027	NA	Intergenic	HERV15-int|LTR|ERV1	-44612	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
19-PTNLD28-TUMOR_peak_55338	chr2	121101877	121102211	+	14.12669	NA	Intergenic	CpG	-1675	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_56606	chr2	161113529	161113853	+	14.12217	NA	TTS (NR_103775)	TTS (NR_103775)	14715	NR_103775	100505984	Hs.729532	NR_103775	ENSG00000115221	LOC100505984	-	uncharacterized LOC100505984	ncRNA
19-PTNLD28-TUMOR_peak_103150	chr9	40920075	40920381	+	14.12217	NA	Intergenic	Intergenic	-128116	NM_033160	26149	Hs.522147	NM_033160	HPRD:11342	ZNF658	-	zinc finger protein 658	protein-coding
19-PTNLD28-TUMOR_peak_82638	chr5	139953773	139954084	+	14.12217	NA	Intergenic	MIR|SINE|MIR	9508	NM_080670	113829	Hs.406840	NM_080670	HPRD:11574	SLC35A4	-	solute carrier family 35, member A4	protein-coding
19-PTNLD28-TUMOR_peak_55066	chr2	113896083	113896314	+	14.12217	NA	Intergenic	Intergenic	11060	NM_173842	3557	Hs.81134	NM_000577	HPRD:00978	IL1RN	DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
19-PTNLD28-TUMOR_peak_26504	chr12	117354737	117354870	+	14.12217	NA	intron (NM_153348, intron 1 of 10)	MLT1H|LTR|ERVL-MaLR	6042	NM_012174	26259	Hs.624537	NM_012174	HPRD:16427	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_70354	chr3	124714374	124714554	+	14.12217	NA	intron (NM_020733, intron 12 of 16)	intron (NM_020733, intron 12 of 16)	60338	NM_020733	57493	Hs.477420	NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_18358	chr11	45864772	45864974	+	14.11863	NA	Intergenic	Intergenic	-3796	NM_001127457	1408	Hs.532491	NM_021117	HPRD:07226	CRY2	HCRY2|PHLL2	cryptochrome circadian clock 2	protein-coding
19-PTNLD28-TUMOR_peak_87888	chr6	49354736	49355213	+	14.11188	NA	Intergenic	L1PA3|LINE|L1	76067	NM_000255	4594	Hs.485527	NM_000255	HPRD:02014	MUT	MCM	methylmalonyl CoA mutase	protein-coding
19-PTNLD28-TUMOR_peak_51059	chr2	10425814	10426024	+	14.11188	NA	Intergenic	Intergenic	-17111	NM_002149	3241	Hs.580427	NM_002149	HPRD:02564	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_17938	chr11	33823848	33824418	+	14.11188	NA	Intergenic	Intergenic	27888	NR_120550	101928440	Hs.202343	NR_120550	ENSG00000254508	FBXO3-AS1	-	FBXO3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_71556	chr3	148360531	148360688	+	14.11188	NA	Intergenic	Intergenic	-55049	NM_009585	185	Hs.477887	NM_000685	HPRD:00107	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_26046	chr12	106810167	106810361	+	14.11188	NA	intron (NM_001160708, intron 12 of 27)	LTR86B1|LTR|ERVL	58404	NM_001160708	55703	Hs.62696	NM_018082	HPRD:11447	POLR3B	C128|HLD8|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
19-PTNLD28-TUMOR_peak_105813	chr9	123382157	123382265	+	14.11188	NA	intron (NM_001080497, intron 3 of 5)	intron (NM_001080497, intron 3 of 5)	-39763	NR_073557	55755	Hs.269560	NM_018249	HPRD:09740	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_12390	chr10	23446463	23446580	+	14.11188	NA	Intergenic	Intergenic	-34939	NM_178161	256297	Hs.351503	NM_178161	HPRD:09526	PTF1A	PACA|PAGEN2|PTF1-p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding
19-PTNLD28-TUMOR_peak_109595	chrX	135962787	135963084	+	14.11188	NA	promoter-TSS (NM_001164803)	promoter-TSS (NM_001164803)	4	NR_028476	27316	Hs.380118	NM_002139	HPRD:02186	RBMX	HNRNPG|HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_103954	chr9	79018348	79018512	+	14.11188	NA	Intergenic	Intergenic	4915	NR_026890	653162	Hs.655646	NR_026890	ENSG00000234618	RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_80825	chr5	76602380	76602664	+	14.11188	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	95816	NM_001029852	8622	Hs.584830	NM_003719	HPRD:04546	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
19-PTNLD28-TUMOR_peak_37009	chr16	28192901	28193088	+	14.11188	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	30245	NM_001270940	23214	Hs.460468	NM_015171	HPRD:10525	XPO6	EXP6|RANBP20	exportin 6	protein-coding
19-PTNLD28-TUMOR_peak_92948	chr7	66162475	66162627	+	14.11188	NA	intron (NM_001287060, intron 1 of 9)	intron (NM_001287060, intron 1 of 9)	15473	NM_001287060	27342	Hs.530053	NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_109091	chrX	106805797	106805979	+	14.11188	NA	intron (NM_032428, intron 11 of 15)	intron (NM_032428, intron 11 of 15)	-16837	NR_046750	100874122	Hs.600967	NR_046750		FRMPD3-AS1	-	FRMPD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75934	chr4	81608857	81609094	+	14.11188	NA	intron (NM_001206997, intron 4 of 6)	L1PA3|LINE|L1	-343144	NM_001201	651	Hs.387411	NM_001201	HPRD:00208	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
19-PTNLD28-TUMOR_peak_98793	chr8	55065884	55066218	+	14.11188	NA	Intergenic	Intergenic	18270	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_105740	chr9	120545293	120545901	+	14.11188	NA	Intergenic	Intergenic	79144	NM_138554	7099	Hs.174312	NM_003266	HPRD:04325	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_543	chr1	8793613	8793813	+	14.11188	NA	intron (NM_001042681, intron 1 of 22)	MLT1F|LTR|ERVL-MaLR	83986	NM_012102	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_24322	chr12	52587884	52588189	+	14.11182	NA	Intergenic	Intergenic	-2252	NM_001081492	144501	Hs.140978	NM_182507	HPRD:14068	KRT80	KB20	keratin 80	protein-coding
19-PTNLD28-TUMOR_peak_91211	chr7	6900095	6900224	+	14.10695	NA	Intergenic	LTR5A|LTR|ERVK	-34233	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_30081	chr14	45430429	45430565	+	14.10694	NA	promoter-TSS (NM_015091)	promoter-TSS (NM_015091)	682	NM_017658	54813	Hs.550906	NM_017658	HPRD:12539	KLHL28	BTBD5	kelch-like family member 28	protein-coding
19-PTNLD28-TUMOR_peak_9356	chr1	202588256	202588485	+	14.10451	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	24211	NM_001136504	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_8205	chr1	172366540	172366660	+	14.10451	NA	intron (NM_001136127, intron 19 of 19)	intron (NM_001136127, intron 19 of 19)	-23228	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_90406	chr6	161796266	161796505	+	14.10451	NA	intron (NM_004562, intron 10 of 11)	intron (NM_004562, intron 10 of 11)	-101278	NM_020133	56895	Hs.353175	NM_020133	HPRD:12437	AGPAT4	1-AGPAT4|LPAAT-delta|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_15300	chr10	103600553	103600745	+	14.10451	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	-1038	NM_173194	30819	Hs.97044	NM_014591	HPRD:06880	KCNIP2	KCHIP2	Kv channel interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91650	chr7	24612166	24612457	+	14.10451	NA	promoter-TSS (NM_016447)	promoter-TSS (NM_016447)	-774	NM_016447	51678	Hs.533355	NM_016447	HPRD:09509	MPP6	PALS2|VAM-1|VAM1|p55T	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
19-PTNLD28-TUMOR_peak_69946	chr3	115231477	115231722	+	14.10451	NA	Intergenic	Intergenic	-110552	NM_002045	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_67437	chr3	32917326	32917636	+	14.10451	NA	intron (NM_001039111, intron 2 of 3)	intron (NM_001039111, intron 2 of 3)	57971	NM_001039111	131405	Hs.567678	NM_001039111		TRIM71	LIN-41|LIN41	tripartite motif containing 71, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_103774	chr9	73516042	73516267	+	14.10451	NA	intron (NM_001007471, intron 1 of 24)	intron (NM_001007471, intron 1 of 24)	-32180	NM_206945	80036	Hs.47288	NM_020952	HPRD:10605	TRPM3	GON-2|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
19-PTNLD28-TUMOR_peak_51972	chr2	30937018	30937179	+	14.10288	NA	Intergenic	Intergenic	93213	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_58964	chr2	235405561	235405728	+	14.10288	NA	promoter-TSS (NM_001282431)	promoter-TSS (NM_001282431)	49	NM_005737	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_34089	chr15	67004288	67004616	+	14.10288	NA	intron (NR_027654, intron 2 of 4)	intron (NR_027654, intron 2 of 4)	3522	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_103498	chr9	67734122	67734321	+	14.10288	NA	Intergenic	MER115|DNA|hAT-Tip100	-44902	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_48423	chr19	30185579	30185904	+	14.10288	NA	Intergenic	Intergenic	20222	NM_001031726	83636	Hs.529094	NM_031448		C19orf12	NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_35183	chr15	90645651	90645872	+	14.10129	NA	promoter-TSS (NM_002168)	promoter-TSS (NM_002168)	25	NM_001290114	3418	Hs.596461	NM_002168	HPRD:00973	IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_47704	chr19	15306311	15306761	+	14.10129	NA	intron (NM_000435, intron 2 of 32)	CpG	5256	NM_000435	4854	Hs.8546	NM_000435	HPRD:02607	NOTCH3	CADASIL|CASIL|IMF2	notch 3	protein-coding
19-PTNLD28-TUMOR_peak_3631	chr1	54739540	54739801	+	14.09372	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	37554	NR_103541	619518	Hs.591438	NM_001034847		SSBP3-AS1	C1orf191|MST128	SSBP3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100533	chr8	124552498	124552696	+	14.09309	NA	intron (NM_001242463, intron 1 of 6)	CpG	896	NM_058229	114907	Hs.403933	NM_058229	HPRD:05966	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
19-PTNLD28-TUMOR_peak_71616	chr3	149189942	149190147	+	14.09309	NA	Intergenic	Intergenic	-2324	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_100552	chr8	124704149	124704418	+	14.08764	NA	intron (NM_001003954, intron 9 of 11)	L5|LINE|RTE	-39093	NM_001081675	340359	Hs.450252	NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch-like family member 38	protein-coding
19-PTNLD28-TUMOR_peak_88010	chr6	53191918	53192050	+	14.08764	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	10431	NR_046241	647190	Hs.520189	NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_37297	chr16	30960631	30960776	+	14.08764	NA	TTS (NM_001282351)	TTS (NM_001282351)	298	NM_152288	93129	Hs.745104	NM_152288	HPRD:14431	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_86573	chr6	31090600	31090828	+	14.08659	NA	intron (NM_014068, intron 1 of 5)	intron (NM_014068, intron 1 of 5)	-2462	NM_001264	1041	Hs.310958	NM_001264	HPRD:03998	CDSN	D6S586E|HTSS|HTSS1|HYPT2|PSS|S	corneodesmosin	protein-coding
19-PTNLD28-TUMOR_peak_42760	chr17	60498914	60499017	+	14.08275	NA	Intergenic	Intergenic	-2281	NM_181725	339175	Hs.381204	NM_181725	HPRD:07795	METTL2A	METTL2	methyltransferase like 2A	protein-coding
19-PTNLD28-TUMOR_peak_56713	chr2	163695931	163696373	+	14.07831	NA	promoter-TSS (NM_173162)	promoter-TSS (NM_173162)	-895	NM_033272	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_84668	chr6	710882	711121	+	14.07831	NA	Intergenic	CpG	-17860	NM_018303	55770	Hs.484412	NM_018303	HPRD:11544	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
19-PTNLD28-TUMOR_peak_44317	chr18	3261434	3261629	+	14.07689	NA	promoter-TSS (NM_033546)	promoter-TSS (NM_033546)	-580	NM_033546	103910	Hs.190086	NM_033546	HPRD:10095	MYL12B	MLC-B|MRLC2	myosin, light chain 12B, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_84593	chr5	180609026	180609204	+	14.07537	NA	Intergenic	Intergenic	9793	NR_108031	102577426	Hs.277359	NR_108031		LOC102577426	-	uncharacterized LOC102577426	ncRNA
19-PTNLD28-TUMOR_peak_96486	chr7	152458565	152458703	+	14.07106	NA	intron (NR_073000, intron 1 of 10)	intron (NR_073000, intron 1 of 10)	1800	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_23695	chr12	32907916	32908449	+	14.06807	NA	exon (NM_001040436, exon 1 of 5)	exon (NM_001040436, exon 1 of 5)	705	NM_001040436	51067	Hs.505231	NM_015936	HPRD:13025	YARS2	MLASA2|MT-TYRRS|TYRRS	tyrosyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_18686	chr11	57671990	57672187	+	14.06807	NA	Intergenic	AluJb|SINE|Alu	-119265	NM_001005212	219956	Hs.689841	NM_001005212	HPRD:17800	OR9Q1	-	olfactory receptor, family 9, subfamily Q, member 1	protein-coding
19-PTNLD28-TUMOR_peak_55369	chr2	121370624	121370776	+	14.06807	NA	Intergenic	Intergenic	-146775	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_35906	chr16	3179459	3179784	+	14.06793	NA	non-coding (NR_110900, exon 4 of 6)	non-coding (NR_110900, exon 4 of 6)	5262	NR_110900	100507458	Hs.522143	NR_110900	ENSG00000263072	ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_32372	chr14	106034910	106035128	+	14.06793	NA	Intergenic	Intergenic	42066	NM_025268	80757	Hs.157527	NM_025268	HPRD:14652	TMEM121	hole	transmembrane protein 121	protein-coding
19-PTNLD28-TUMOR_peak_36447	chr16	14826973	14827519	+	14.06793	NA	Intergenic	CpG	-17424	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_86472	chr6	30509313	30509471	+	14.06672	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-15094	NM_001077497	80742	Hs.118354	NM_025263		PRR3	CAT56	proline rich 3	protein-coding
19-PTNLD28-TUMOR_peak_47129	chr19	9473494	9473810	+	14.06672	NA	promoter-TSS (NM_003451)	promoter-TSS (NM_003451)	-44	NM_003451	7730	Hs.728944	NM_003451	HPRD:03175	ZNF177	PIGX	zinc finger protein 177	protein-coding
19-PTNLD28-TUMOR_peak_1291	chr1	20960195	20960494	+	14.06672	NA	TTS (NR_106732)	TTS (NR_106732)	172	NR_106732	102464833		NR_106732		MIR6084	hsa-mir-6084	microRNA 6084	ncRNA
19-PTNLD28-TUMOR_peak_12897	chr10	34815725	34815875	+	14.06672	NA	intron (NM_001184791, intron 2 of 20)	intron (NM_001184791, intron 2 of 20)	288453	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_70120	chr3	121661079	121661209	+	14.06672	NA	3' UTR (NM_001145998, exon 21 of 21)	3' UTR (NM_001145998, exon 21 of 21)	47973	NM_021082	6565	Hs.518089	NM_021082	HPRD:09088	SLC15A2	PEPT2	solute carrier family 15 (oligopeptide transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_62183	chr20	55008992	55009222	+	14.06672	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	21793	NM_001164114	57091	Hs.473144	NM_020356	HPRD:09842	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffolding protein family member 4	protein-coding
19-PTNLD28-TUMOR_peak_41556	chr17	40776231	40776419	+	14.06672	NA	Intergenic	Intergenic	-14880	NM_178126	162427	Hs.632262	NM_178126	HPRD:14108	FAM134C	-	family with sequence similarity 134, member C	protein-coding
19-PTNLD28-TUMOR_peak_67950	chr3	46934052	46934308	+	14.06337	NA	intron (NM_001184744, intron 2 of 14)	CpG	10441	NM_001184744	5745	Hs.1019	NM_000316	HPRD:01347	PTH1R	PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_58016	chr2	206790622	206790812	+	14.06337	NA	Intergenic	CpG	160189	NM_017759	54891	Hs.445036	NM_017759	HPRD:07894	INO80D	-	INO80 complex subunit D	protein-coding
19-PTNLD28-TUMOR_peak_63183	chr21	33795751	33795914	+	14.06337	NA	intron (NR_104472, intron 1 of 6)	intron (NR_104472, intron 1 of 6)	11087	NR_104472	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_108762	chrX	73671038	73671248	+	14.06337	NA	intron (NM_006517, intron 1 of 5)	intron (NM_006517, intron 1 of 5)	29815	NM_006517	6567	Hs.75317	NM_006517	HPRD:02106	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16, member 2 (thyroid hormone transporter)	protein-coding
19-PTNLD28-TUMOR_peak_8912	chr1	186606501	186606778	+	14.06337	NA	Intergenic	L1PA2|LINE|L1	42920	NM_000963	5743	Hs.196384	NM_000963	HPRD:02599	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
19-PTNLD28-TUMOR_peak_88119	chr6	56578224	56578368	+	14.06337	NA	intron (NM_183380, intron 2 of 93)	intron (NM_183380, intron 2 of 93)	36842	NR_046940	100873774		NR_046940	ENSG00000207203	RNU6-71P	RNU6-71	RNA, U6 small nuclear 71, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_43272	chr17	71489497	71489678	+	14.06337	NA	intron (NM_001144952, intron 2 of 44)	intron (NM_001144952, intron 2 of 44)	150640	NM_001144952	54549	Hs.435719	NM_019064	HPRD:06239	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_5084	chr1	96987736	96987889	+	14.06337	NA	Intergenic	L2c|LINE|L2	-148131	NR_110693	101928241	Hs.514137	NR_110693	ENSG00000231987	LOC101928241	-	uncharacterized LOC101928241	ncRNA
19-PTNLD28-TUMOR_peak_85254	chr6	10099377	10099751	+	14.06337	NA	Intergenic	Intergenic	-312987	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21973	chr11	126573701	126573885	+	14.06337	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	47812	NR_120533	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
19-PTNLD28-TUMOR_peak_77725	chr4	155253973	155254485	+	14.06337	NA	exon (NM_001142552, exon 5 of 8)	exon (NM_001142552, exon 5 of 8)	58220	NM_017639	54798	Hs.655664	NM_017639	HPRD:10858	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
19-PTNLD28-TUMOR_peak_29651	chr14	25840391	25840640	+	14.06337	NA	Intergenic	Intergenic	-321420	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_79448	chr5	34695842	34695976	+	14.06337	NA	intron (NM_001145525, intron 4 of 19)	AluJr|SINE|Alu	8245	NM_001145523	26064	Hs.431400	NM_015577	HPRD:09416	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
19-PTNLD28-TUMOR_peak_47538	chr19	13748464	13748918	+	14.06337	NA	Intergenic	L1ME1|LINE|L1	-110062	NM_030818	81576	Hs.24998	NM_030818	HPRD:11304	CCDC130	-	coiled-coil domain containing 130	protein-coding
19-PTNLD28-TUMOR_peak_58382	chr2	218824565	218824751	+	14.06337	NA	Intergenic	Intergenic	-15862	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_74966	chr4	38376085	38376417	+	14.06337	NA	Intergenic	AluY|SINE|Alu	148550	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_85535	chr6	14046783	14046943	+	14.06337	NA	Intergenic	Intergenic	-70624	NM_001251901	9308	Hs.595133	NM_004233	HPRD:05170	CD83	BL11|HB15	CD83 molecule	protein-coding
19-PTNLD28-TUMOR_peak_40624	chr17	20706535	20706974	+	14.06337	NA	Intergenic	AluY|SINE|Alu	-64992	NR_104185	440416	Hs.661076	NR_104185		LOC440416	-	uncharacterized LOC440416	ncRNA
19-PTNLD28-TUMOR_peak_103466	chr9	67028463	67028637	+	14.06090	NA	intron (NR_046175, intron 2 of 3)	intron (NR_046175, intron 2 of 3)	3522	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	ncRNA
19-PTNLD28-TUMOR_peak_101344	chr8	139969965	139970178	+	14.05966	NA	Intergenic	MER4C|LTR|ERV1	-43835	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_98192	chr8	37469113	37469259	+	14.05878	NA	Intergenic	Intergenic	-84115	NM_025069	80139	Hs.744591	NM_025069		ZNF703	ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
19-PTNLD28-TUMOR_peak_61557	chr20	46556379	46556568	+	14.05878	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-55497	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
19-PTNLD28-TUMOR_peak_91917	chr7	32768046	32768661	+	14.05878	NA	non-coding (NR_003502, exon 1 of 1)	non-coding (NR_003502, exon 1 of 1)	791	NR_003502	441208	Hs.510645	NM_001013723		ZNRF2P1	-	zinc and ring finger 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_68232	chr3	50560699	50560875	+	14.05878	NA	Intergenic	Intergenic	-19112	NM_001291101	9254	Hs.476273	NM_006030	HPRD:06154	CACNA2D2	CACNA2D	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_84513	chr5	179512306	179512481	+	14.05878	NA	Intergenic	Intergenic	-13275	NM_018434	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_80359	chr5	67038136	67038302	+	14.05878	NA	Intergenic	L1PA2|LINE|L1	-447485	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_591	chr1	9335666	9335839	+	14.05878	NA	Intergenic	Intergenic	-17189	NM_025106	80176	Hs.8261	NM_025106	HPRD:18106	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_55742	chr2	131911681	131912027	+	14.05878	NA	Intergenic	Intergenic	49434	NM_017958	55041	Hs.469944	NM_017958	HPRD:15144	PLEKHB2	EVT2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
19-PTNLD28-TUMOR_peak_3127	chr1	45267588	45267839	+	14.05573	NA	intron (NM_004073, intron 5 of 14)	intron (NM_004073, intron 5 of 14)	1677	NM_004073	1263	Hs.632415	NM_004073	HPRD:04222	PLK3	CNK|FNK|PRK	polo-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_106829	chr9	140111739	140112135	+	14.05563	NA	3' UTR (NM_001144026, exon 14 of 14)	3' UTR (NM_001144026, exon 14 of 14)	3838	NM_031297	727800	Hs.512767	NM_031297	HPRD:13182	RNF208	-	ring finger protein 208	protein-coding
19-PTNLD28-TUMOR_peak_84096	chr5	173260325	173260621	+	14.05563	NA	Intergenic	Intergenic	-42528	NR_108028	101928154	Hs.366725	NR_108028		LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
19-PTNLD28-TUMOR_peak_103733	chr9	72659465	72659790	+	14.05563	NA	intron (NM_153267, intron 2 of 13)	intron (NM_153267, intron 2 of 13)	1130	NM_153267	256691	Hs.547172	NM_153267	HPRD:14353	MAMDC2	-	MAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_38266	chr16	66939773	66939915	+	14.05256	NA	Intergenic	Intergenic	13043	NM_001204744	1014	Hs.513660	NM_004062	HPRD:11929	CDH16	-	cadherin 16, KSP-cadherin	protein-coding
19-PTNLD28-TUMOR_peak_58618	chr2	224679920	224680168	+	14.05256	NA	intron (NR_110906, intron 1 of 3)	intron (NR_110906, intron 1 of 3)	22275	NR_110906	130340	Hs.632555	NM_178814	HPRD:16495	AP1S3	-	adaptor-related protein complex 1, sigma 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_102412	chr9	20356427	20356644	+	14.05256	NA	intron (NM_001286691, intron 8 of 10)	intron (NM_001286691, intron 8 of 10)	54701	NR_039684	100616229		NR_039684		MIR4473	-	microRNA 4473	ncRNA
19-PTNLD28-TUMOR_peak_44213	chr18	532160	532288	+	14.05256	NA	Intergenic	Intergenic	-31495	NM_130386	81035	Hs.464422	NM_030781	HPRD:06358	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
19-PTNLD28-TUMOR_peak_14965	chr10	95241943	95242219	+	14.05256	NA	promoter-TSS (NM_013451)	promoter-TSS (NM_013451)	-7	NM_013451	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_5299	chr1	108588841	108588988	+	14.05032	NA	Intergenic	Intergenic	-81369	NM_006113	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_17494	chr11	18127555	18127822	+	14.05032	NA	promoter-TSS (NM_138421)	promoter-TSS (NM_138421)	-50	NM_138421	113174	Hs.591998	NM_138421	HPRD:13999	SAAL1	SPACIA1	serum amyloid A-like 1	protein-coding
19-PTNLD28-TUMOR_peak_37003	chr16	28062658	28062985	+	14.05032	NA	intron (NM_001109763, intron 1 of 6)	L2a|LINE|L2	12009	NM_001109763	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_51970	chr2	30930000	30930128	+	14.05032	NA	Intergenic	Intergenic	100247	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_94210	chr7	99013220	99013404	+	14.05032	NA	intron (NM_003910, intron 3 of 5)	LTR13|LTR|ERVK	6711	NM_003910	8896	Hs.380233	NM_003910	HPRD:10351	BUD31	Cwc14|EDG-2|EDG2|G10|YCR063W|fSAP17	BUD31 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_102762	chr9	34145196	34145532	+	14.05032	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-18593	NM_015397	25853	Hs.493750	NM_015397	HPRD:10031	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
19-PTNLD28-TUMOR_peak_101997	chr9	3740792	3741053	+	14.05032	NA	Intergenic	Intergenic	72836	NR_121586	101929302	Hs.122828	NR_121586		RFX3-AS1	-	RFX3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54794	chr2	109886642	109886910	+	14.05032	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	43305	NR_036224	100423027		NR_036224	miRBase:MI0015870	MIR4266	-	microRNA 4266	ncRNA
19-PTNLD28-TUMOR_peak_91949	chr7	33708851	33709295	+	14.05032	NA	Intergenic	Intergenic	-235450	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_76375	chr4	100579013	100579234	+	14.05032	NA	Intergenic	Intergenic	93888	NM_001300785	4547	Hs.195799	NM_000253	HPRD:01144	MTTP	ABL|MTP	microsomal triglyceride transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_101039	chr8	132783571	132783770	+	14.05032	NA	Intergenic	L1PA2|LINE|L1	-132686	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_39215	chr16	85707786	85707915	+	14.05032	NA	3' UTR (NM_014615, exon 16 of 16)	3' UTR (NM_014615, exon 16 of 16)	14738	NM_016095	51659	Hs.433180	NM_016095		GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_47532	chr19	13700135	13700298	+	14.05032	NA	Intergenic	Intergenic	-82942	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_42554	chr17	56110093	56110410	+	14.05032	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-25544	NM_006924	6426	Hs.68714	NM_006924		SRSF1	ASF|SF2|SF2p33|SFRS1|SRp30a	serine/arginine-rich splicing factor 1	protein-coding
19-PTNLD28-TUMOR_peak_109468	chrX	130712694	130712998	+	14.05032	NA	Intergenic	L1PA2|LINE|L1	34798	NM_001004486	347468	Hs.553711	NM_001004486	HPRD:18600	OR13H1	ORX1	olfactory receptor, family 13, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_6005	chr1	120601512	120601702	+	14.04664	NA	intron (NM_024408, intron 1 of 33)	intron (NM_024408, intron 1 of 33)	10710	NM_001200001	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_24041	chr12	48297752	48297946	+	14.04206	NA	intron (NM_001017535, intron 1 of 10)	intron (NM_001017535, intron 1 of 10)	965	NM_001017536	7421	Hs.524368	NM_000376	HPRD:03463	VDR	NR1I1|PPP1R163	vitamin D (1,25- dihydroxyvitamin D3) receptor	protein-coding
19-PTNLD28-TUMOR_peak_64236	chr22	18256087	18256416	+	14.04206	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	557	NM_197966	637	Hs.591054	NM_001196	HPRD:03590	BID	FP497	BH3 interacting domain death agonist	protein-coding
19-PTNLD28-TUMOR_peak_4117	chr1	65614402	65614679	+	14.04184	NA	intron (NM_001005353, intron 2 of 5)	CpG	690	NM_013410	205	Hs.10862	NM_013410	HPRD:00048	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_62316	chr20	56289594	56289694	+	14.03911	NA	Intergenic	MIR|SINE|MIR	-3052	NM_199171	56937	Hs.517155	NM_020182	HPRD:09415	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
19-PTNLD28-TUMOR_peak_13846	chr10	63803495	63803684	+	14.03666	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-5381	NM_001244638	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_3907	chr1	60956215	60956402	+	14.03666	NA	Intergenic	L1PA3|LINE|L1	334948	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_18879	chr11	61355469	61355708	+	14.03666	NA	promoter-TSS (NR_110189)	promoter-TSS (NR_110189)	-378	NR_110189	101927495	Hs.553866	NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
19-PTNLD28-TUMOR_peak_75440	chr4	57774427	57774567	+	14.03666	NA	promoter-TSS (NM_001193508)	promoter-TSS (NM_001193508)	455	NM_005612	5978	Hs.307836	NM_005612	HPRD:08990	REST	NRSF|XBR	RE1-silencing transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_99021	chr8	66934547	66934671	+	14.03666	NA	intron (NM_033105, intron 1 of 5)	intron (NM_033105, intron 1 of 5)	818	NM_033105	85479	Hs.491885	NM_033105	HPRD:07474	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
19-PTNLD28-TUMOR_peak_724	chr1	10891143	10891314	+	14.03666	NA	Intergenic	Intergenic	-34495	NM_017766	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_90835	chr7	1513706	1513937	+	14.03666	NA	exon (NM_001080453, exon 41 of 48)	exon (NM_001080453, exon 41 of 48)	-14712	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_37974	chr16	56644129	56644478	+	14.03658	NA	TTS (NM_005953)	TTS (NM_005953)	1825	NM_005953	4502	Hs.534330	NM_005953		MT2A	MT2	metallothionein 2A	protein-coding
19-PTNLD28-TUMOR_peak_83160	chr5	149381339	149381508	+	14.03499	NA	promoter-TSS (NM_030953)	promoter-TSS (NM_030953)	-693	NM_030953	81789	Hs.169333	NM_030953	HPRD:18190	TIGD6	-	tigger transposable element derived 6	protein-coding
19-PTNLD28-TUMOR_peak_3520	chr1	53164393	53164568	+	14.03244	NA	promoter-TSS (NM_023077)	promoter-TSS (NM_023077)	-442	NM_023077	65260	Hs.349905	NM_023077		COA7	C1orf163|RESA1|SELRC1	cytochrome c oxidase assembly factor 7 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_49818	chr19	49661555	49661692	+	14.03244	NA	intron (NM_001195227, intron 2 of 23)	intron (NM_001195227, intron 2 of 23)	607	NM_017636	54795	Hs.467101	NM_017636	HPRD:09502	TRPM4	PFHB1B|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding
19-PTNLD28-TUMOR_peak_50381	chr19	55979227	55979596	+	14.03244	NA	Intergenic	Intergenic	-6362	NM_001136202	79763	Hs.467306	NM_024710	HPRD:08030	ISOC2	-	isochorismatase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_30224	chr14	50862981	50863137	+	14.03244	NA	promoter-TSS (NM_004196)	promoter-TSS (NM_004196)	-417	NM_004196	8814	Hs.280881	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
19-PTNLD28-TUMOR_peak_25053	chr12	66218317	66218474	+	14.03184	NA	5' UTR (NM_003484, exon 1 of 4)	5' UTR (NM_003484, exon 1 of 4)	155	NM_001300918	8091	Hs.505924	NM_003483	HPRD:02827	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
19-PTNLD28-TUMOR_peak_31432	chr14	77594931	77595151	+	14.02951	NA	Intergenic	L2c|LINE|L2	13093	NM_174976	283576	Hs.525485	NM_174976	HPRD:12655	ZDHHC22	C14orf59	zinc finger, DHHC-type containing 22	protein-coding
19-PTNLD28-TUMOR_peak_26870	chr12	123318924	123319495	+	14.02951	NA	promoter-TSS (NM_003959)	promoter-TSS (NM_003959)	-830	NM_003959	9026	Hs.524815	NM_003959	HPRD:10412	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
19-PTNLD28-TUMOR_peak_13472	chr10	48951877	48952068	+	14.02951	NA	promoter-TSS (NR_111968)	promoter-TSS (NR_111968)	-620	NR_111968	414212	Hs.661155	NR_048574	ENSG00000227194	GLUD1P7	GLUD1P2|GLUDP2|GLUDP7|bA342C24.3	glutamate dehydrogenase 1 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_77358	chr4	143012415	143012642	+	14.02416	NA	intron (NM_001101669, intron 23 of 25)	MIR3|SINE|MIR	454779	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_19012	chr11	62446324	62446805	+	14.01301	NA	promoter-TSS (NM_001286078)	promoter-TSS (NM_001286078)	25	NM_015853	51035	Hs.351296	NM_015853	HPRD:11266	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_57544	chr2	192626631	192626848	+	14.01301	NA	Intergenic	L1PA2|LINE|L1	83877	NR_045623	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_39986	chr17	7387189	7387319	+	14.01202	NA	promoter-TSS (NM_000937)	promoter-TSS (NM_000937)	314	NM_020899	57659	Hs.35096	NM_020899	HPRD:11693	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_90748	chr7	569878	570073	+	14.01159	NA	Intergenic	CpG	9947	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	ncRNA
19-PTNLD28-TUMOR_peak_52528	chr2	45941888	45942049	+	14.01159	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	62925	NM_005400	5581	Hs.580351	NM_005400	HPRD:01500	PRKCE	PKCE|nPKC-epsilon	protein kinase C, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_92112	chr7	39808179	39808347	+	14.01159	NA	intron (NR_026999, intron 2 of 11)	AluJr|SINE|Alu	35096	NR_026999	349114	Hs.414183	NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
19-PTNLD28-TUMOR_peak_20187	chr11	76802253	76802541	+	14.01159	NA	intron (NM_004055, intron 2 of 12)	intron (NM_004055, intron 2 of 12)	-11489	NM_006189	4975	Hs.673853	NM_006189	HPRD:01254	OMP	-	olfactory marker protein	protein-coding
19-PTNLD28-TUMOR_peak_1646	chr1	26409766	26410042	+	14.01159	NA	Intergenic	Intergenic	-15779	NM_032588	84676	Hs.279709	NM_032588	HPRD:05843	TRIM63	IRF|MURF1|MURF2|RNF28|SMRZ	tripartite motif containing 63, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_89639	chr6	138060767	138061002	+	14.01159	NA	promoter-TSS (NR_121618)	promoter-TSS (NR_121618)	-710	NR_121619	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_83976	chr5	172075117	172075352	+	14.01159	NA	intron (NM_001142651, intron 1 of 4)	MIRb|SINE|MIR	6958	NM_001142651	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
19-PTNLD28-TUMOR_peak_30994	chr14	69378446	69378549	+	14.01159	NA	intron (NM_001102, intron 4 of 20)	intron (NM_001102, intron 4 of 20)	67586	NM_001130004	87	Hs.509765	NM_001102	HPRD:00020	ACTN1	BDPLT15	actinin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_74800	chr4	25443239	25443481	+	14.01159	NA	Intergenic	L2b|LINE|L2	64512	NM_013367	29945	Hs.152173	NM_013367	HPRD:09505	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_7806	chr1	163553442	163553750	+	14.01159	NA	Intergenic	Intergenic	-160615	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58717	chr2	228582660	228582897	+	14.01159	NA	promoter-TSS (NM_025243)	promoter-TSS (NM_025243)	-33	NM_025243	80704	Hs.221597	NM_025243	HPRD:07311	SLC19A3	BBGD|THMD2|THTR2	solute carrier family 19 (thiamine transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_61818	chr20	49067782	49068158	+	14.01159	NA	Intergenic	Intergenic	-58888	NM_002827	5770	Hs.417549	NM_002827	HPRD:01477	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
19-PTNLD28-TUMOR_peak_8315	chr1	175041641	175041824	+	14.01159	NA	intron (NM_022093, intron 1 of 18)	intron (NM_022093, intron 1 of 18)	4738	NM_022093	63923	Hs.156369	NM_022093	ENSG00000120332	TNN	TN-W	tenascin N	protein-coding
19-PTNLD28-TUMOR_peak_77556	chr4	151138525	151138692	+	14.00847	NA	intron (NR_036614, intron 5 of 16)	intron (NR_036614, intron 5 of 16)	139182	NR_036614	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_18367	chr11	45920989	45921198	+	14.00377	NA	intron (NM_005456, intron 2 of 11)	intron (NM_005456, intron 2 of 11)	7740	NM_001080446	143678	Hs.193741	NM_001080446	ENSG00000234776	C11orf94	-	chromosome 11 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_70527	chr3	126860697	126860992	+	14.00377	NA	Intergenic	Intergenic	-51130	NM_001007534	285311	Hs.591284	NM_001007534	HPRD:16949	C3orf56	-	chromosome 3 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_46469	chr19	205542	205723	+	14.00376	NA	Intergenic	Intergenic	-3423	NR_028324	399844	Hs.356758	NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
19-PTNLD28-TUMOR_peak_25460	chr12	81472728	81472860	+	14.00258	NA	intron (NM_024560, intron 1 of 15)	intron (NM_024560, intron 1 of 15)	985	NM_024560	79611	Hs.259559	NM_024560	HPRD:13385	ACSS3	-	acyl-CoA synthetase short-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_109818	chrX	151849595	151849774	+	14.00258	NA	Intergenic	Intergenic	-17561	NM_005363	4105	Hs.441113	NM_005363	HPRD:02168	MAGEA6	CT1.6|MAGE-3b|MAGE3B|MAGE6	melanoma antigen family A, 6	protein-coding
19-PTNLD28-TUMOR_peak_39224	chr16	85815701	85815988	+	14.00258	NA	intron (NM_006067, intron 2 of 4)	intron (NM_006067, intron 2 of 4)	17304	NM_006067	10328	Hs.173162	NM_006067	HPRD:05350	EMC8	C16orf2|C16orf4|COX4NB|FAM158B|NOC4	ER membrane protein complex subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_65628	chr22	40878514	40878629	+	14.00258	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-19127	NM_001282660	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_103924	chr9	78519000	78519215	+	14.00258	NA	intron (NR_120409, intron 1 of 19)	MIR3|SINE|MIR	13547	NM_001190482	5125	Hs.368542	NM_006200	HPRD:08985	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
19-PTNLD28-TUMOR_peak_21919	chr11	125950308	125950667	+	14.00258	NA	Intergenic	Intergenic	-17300	NM_001243597	50937	Hs.38034	NM_016952	HPRD:16372	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_6560	chr1	148766175	148766381	+	13.99912	NA	intron (NR_104217, intron 2 of 17)	intron (NR_104217, intron 2 of 17)	-39737	NM_001144032	730262		NM_001144032		PPIAL4E	COAS2	peptidylprolyl isomerase A (cyclophilin A)-like 4E	protein-coding
19-PTNLD28-TUMOR_peak_96145	chr7	148232272	148232659	+	13.99756	NA	Intergenic	Intergenic	-55192	NM_145304	202865	Hs.352212	NM_145304	HPRD:12921	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_60555	chr20	31849921	31850148	+	13.99646	NA	Intergenic	MER113|DNA|hAT-Charlie	-20907	NM_033197	92747	Hs.65551	NM_033197	HPRD:12740	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_33936	chr15	63795413	63795761	+	13.99646	NA	Intergenic	Intergenic	-1123	NR_046341	9960	Hs.458499	NM_006537		USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_14153	chr10	72568905	72569153	+	13.99646	NA	Intergenic	Intergenic	-6675	NM_003901	8879	Hs.499984	NM_003901	HPRD:07224	SGPL1	S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
19-PTNLD28-TUMOR_peak_99717	chr8	101426720	101426839	+	13.99646	NA	Intergenic	Intergenic	31788	NR_039681	100616451		NR_039681	miRBase:MI0016822	MIR4471	-	microRNA 4471	ncRNA
19-PTNLD28-TUMOR_peak_107817	chrX	23825446	23825622	+	13.99646	NA	Intergenic	Intergenic	24259	NR_027783	6303	Hs.28491	NM_002970	HPRD:02431	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_66433	chr3	9183707	9183892	+	13.99646	NA	intron (NM_001033117, intron 1 of 21)	MIRc|SINE|MIR	-50378	NR_121664	101927416	Hs.475364	NR_121663		LOC101927416	-	uncharacterized LOC101927416	ncRNA
19-PTNLD28-TUMOR_peak_91791	chr7	29153968	29154088	+	13.99646	NA	intron (NM_031311, intron 2 of 12)	intron (NM_031311, intron 2 of 12)	-10621	NR_120523	101928168	Hs.666750	NR_120523		LOC101928168	-	uncharacterized LOC101928168	ncRNA
19-PTNLD28-TUMOR_peak_32389	chr14	106213584	106213701	+	13.99481	NA	Intergenic	Intergenic	-74498	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96650	chr7	155589686	155589892	+	13.99481	NA	Intergenic	CpG	15178	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
19-PTNLD28-TUMOR_peak_43391	chr17	73178617	73178844	+	13.99481	NA	intron (NM_001005849, intron 1 of 2)	CpG	368	NM_001005849	6613	Hs.380973	NM_006937	HPRD:04332	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin-like modifier 2	protein-coding
19-PTNLD28-TUMOR_peak_95435	chr7	132260505	132260643	+	13.99481	NA	intron (NM_181775, intron 2 of 4)	CpG	749	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_1698	chr1	26947342	26947856	+	13.99481	NA	Intergenic	CpG	66566	NR_031740	100302190		NR_031740		MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
19-PTNLD28-TUMOR_peak_15136	chr10	99519305	99519609	+	13.99425	NA	3' UTR (NM_144588, exon 13 of 13)	3' UTR (NM_144588, exon 13 of 13)	12299	NM_003015	6425	Hs.279565	NM_003015	HPRD:09166	SFRP5	SARP3	secreted frizzled-related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_98884	chr8	57232575	57232863	+	13.99425	NA	5' UTR (NM_138969, exon 1 of 7)	5' UTR (NM_138969, exon 1 of 7)	522	NM_138969	195814	Hs.170673	NM_138969	HPRD:12351	SDR16C5	RDH#2|RDH-E2|RDHE2	short chain dehydrogenase/reductase family 16C, member 5	protein-coding
19-PTNLD28-TUMOR_peak_92009	chr7	35956721	35956864	+	13.99425	NA	Intergenic	Intergenic	116196	NM_001011553	989	Hs.191346	NM_001788		SEPT7	CDC10|CDC3|NBLA02942|SEPT7A	septin 7	protein-coding
19-PTNLD28-TUMOR_peak_38813	chr16	77323267	77323514	+	13.99425	NA	intron (NM_199355, intron 21 of 22)	intron (NM_199355, intron 21 of 22)	90041	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_98765	chr8	54274939	54275115	+	13.99425	NA	Intergenic	Intergenic	-110770	NM_001282904	4986	Hs.106795	NM_000912	HPRD:01309	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor, kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_72993	chr3	186888046	186888225	+	13.99425	NA	Intergenic	L1MC5|LINE|L1	-27139	NM_153708	132112	Hs.518480	NM_153708	HPRD:16449	RTP1	Z3CXXC1	receptor (chemosensory) transporter protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45984	chr18	56822483	56822770	+	13.99425	NA	intron (NM_033280, intron 3 of 5)	intron (NM_033280, intron 3 of 5)	15501	NM_033280	90701	Hs.45107	NM_033280	HPRD:15310	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_99301	chr8	81169253	81169467	+	13.99425	NA	Intergenic	Intergenic	15736	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_97917	chr8	28446784	28447026	+	13.99425	NA	Intergenic	Intergenic	-84206	NR_036250	100422903		NR_036250	miRBase:MI0015896	MIR4288	-	microRNA 4288	ncRNA
19-PTNLD28-TUMOR_peak_80545	chr5	71078889	71079026	+	13.99425	NA	Intergenic	Intergenic	63967	NM_004291	9607	Hs.1707	NM_004291	HPRD:04006	CARTPT	CART	CART prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_17514	chr11	18617073	18617285	+	13.99425	NA	Intergenic	Intergenic	-4172	NR_038360	100506540	Hs.585529	NR_038360	ENSG00000247595	SPTY2D1-AS1	-	SPTY2D1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34521	chr15	75182281	75182449	+	13.99425	NA	promoter-TSS (NM_001289156)	promoter-TSS (NM_001289156)	13	NM_001289157	4351	Hs.75694	NM_002435	HPRD:01108	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
19-PTNLD28-TUMOR_peak_39646	chr17	1639967	1640176	+	13.99425	NA	intron (NM_001163811, intron 9 of 9)	intron (NM_001163811, intron 9 of 9)	-6059	NM_001165921	5345	Hs.159509	NM_000934	HPRD:02029	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI	serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2	protein-coding
19-PTNLD28-TUMOR_peak_21932	chr11	126060760	126060990	+	13.99425	NA	Intergenic	MIRb|SINE|MIR	20712	NM_032795	84881	Hs.150458	NM_032795	HPRD:07862	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_28741	chr13	97423898	97424067	+	13.99425	NA	intron (NM_153456, intron 1 of 1)	intron (NM_153456, intron 1 of 1)	212444	NR_051966	100887754	Hs.617003	NR_051966		LINC00359	-	long intergenic non-protein coding RNA 359	ncRNA
19-PTNLD28-TUMOR_peak_39400	chr16	88870112	88870251	+	13.99299	NA	promoter-TSS (NM_030928)	promoter-TSS (NM_030928)	-5	NM_030928	81620	Hs.122908	NM_030928	HPRD:06900	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
19-PTNLD28-TUMOR_peak_60516	chr20	31269255	31269553	+	13.99111	NA	Intergenic	Intergenic	-29621	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
19-PTNLD28-TUMOR_peak_43476	chr17	73743979	73744161	+	13.99111	NA	intron (NM_001005619, intron 25 of 38)	intron (NM_001005619, intron 25 of 38)	17210	NM_000154	2584	Hs.407966	NM_000154	HPRD:05057	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86599	chr6	31351064	31351187	+	13.98904	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-16436	NM_001289152	100507436	Hs.130838	NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
19-PTNLD28-TUMOR_peak_45497	chr18	43873803	43874013	+	13.98904	NA	Intergenic	MIRb|SINE|MIR	-40279	NM_152470	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_40342	chr17	16719314	16719492	+	13.98904	NA	Intergenic	Intergenic	16744	NR_029392	400578	Hs.723586	NR_029392	ENSG00000227300	KRT16P2	-	keratin 16 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_20247	chr11	77980119	77980287	+	13.98904	NA	intron (NM_012296, intron 2 of 9)	intron (NM_012296, intron 2 of 9)	72723	NM_012296	9846	Hs.429434	NM_012296	HPRD:05866	GAB2	-	GRB2-associated binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_64789	chr22	25016308	25016569	+	13.98904	NA	exon (NM_013430, exon 8 of 16)	exon (NM_013430, exon 8 of 16)	-12444	NR_024494	644165	Hs.531306	NR_024494		BCRP3	BCR3|BCRL3|BCRL6	breakpoint cluster region pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_58368	chr2	218715165	218715345	+	13.98904	NA	intron (NM_022648, intron 16 of 32)	intron (NM_022648, intron 16 of 32)	50096	NR_106867	102465485		NR_106867		MIR6809	hsa-mir-6809	microRNA 6809	ncRNA
19-PTNLD28-TUMOR_peak_34900	chr15	83501380	83501659	+	13.98904	NA	intron (NM_001080435, intron 9 of 9)	intron (NM_001080435, intron 9 of 9)	23139	NM_001080435	123720	Hs.377360	NM_001080435	ENSG00000156232	WHAMM	WHDC1	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding
19-PTNLD28-TUMOR_peak_88379	chr6	75813251	75813360	+	13.98904	NA	intron (NM_080645, intron 40 of 50)	intron (NM_080645, intron 40 of 50)	102318	NM_080645	1303	Hs.101302	NM_004370	HPRD:00377	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_12343	chr10	22418319	22418476	+	13.98904	NA	Intergenic	L1PA2|LINE|L1	80515	NM_001199938	340900	Hs.450519	NM_001199938	ENSG00000223601	EBLN1	EBLN-1	endogenous Bornavirus-like nucleoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_65029	chr22	30183351	30183483	+	13.98904	NA	Intergenic	Intergenic	20059	NM_001003684	29796	Hs.284292	NM_013387	HPRD:13691	UQCR10	HSPC051|HSPC151|QCR9|UCCR7.2|UCRC	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding
19-PTNLD28-TUMOR_peak_35215	chr15	90956032	90956212	+	13.98904	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	24649	NM_003870	8826	Hs.430551	NM_003870	HPRD:04541	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64235	chr22	18233022	18233206	+	13.98904	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	13911	NR_036168	100423025		NR_036168		MIR3198-1	MIR3198	microRNA 3198-1	ncRNA
19-PTNLD28-TUMOR_peak_53504	chr2	73944130	73944316	+	13.98904	NA	Intergenic	MER57B1|LTR|ERV1	-15756	NM_016347	51471	Hs.278983	NM_016347		NAT8B	CML2|Hcml2|NAT8BP	N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_70025	chr3	118904252	118904435	+	13.98752	NA	intron (NM_006952, intron 1 of 7)	intron (NM_006952, intron 1 of 7)	11918	NM_006952	7348	Hs.271580	NM_006952	HPRD:03853	UPK1B	TSPAN20|UPIB|UPK1	uroplakin 1B	protein-coding
19-PTNLD28-TUMOR_peak_105756	chr9	121766587	121766762	+	13.98295	NA	Intergenic	Intergenic	365065	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_70810	chr3	130611875	130612004	+	13.98295	NA	promoter-TSS (NM_001199183)	promoter-TSS (NM_001199183)	-896	NM_001199179	27032	Hs.584884	NM_014382	HPRD:05089	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase, Ca++ transporting, type 2C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_42792	chr17	60900660	60900837	+	13.97616	NA	intron (NR_036146, intron 3 of 3)	AluSz6|SINE|Alu	-15006	NM_152598	162333	Hs.665663	NM_152598	HPRD:08762	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_39474	chr16	89648680	89648883	+	13.97616	NA	intron (NM_014427, intron 3 of 16)	intron (NM_014427, intron 3 of 16)	6605	NM_153636	27132	Hs.461775	NM_014427	HPRD:05749	CPNE7	-	copine VII	protein-coding
19-PTNLD28-TUMOR_peak_63686	chr21	43124452	43124653	+	13.97524	NA	Intergenic	Intergenic	11383	NR_027272	150135	Hs.350679	NM_152506	HPRD:10741	LINC00479	C21orf129	long intergenic non-protein coding RNA 479	ncRNA
19-PTNLD28-TUMOR_peak_35772	chr16	2109080	2109299	+	13.97524	NA	intron (NM_000548, intron 10 of 41)	AluSq|SINE|Alu	11199	NM_001114382	7249	Hs.90303	NM_000548	HPRD:01850	TSC2	LAM|PPP1R160|TSC4	tuberous sclerosis 2	protein-coding
19-PTNLD28-TUMOR_peak_84561	chr5	180226989	180227176	+	13.97524	NA	intron (NM_001114617, intron 2 of 2)	MLT1G3|LTR|ERVL-MaLR	2966	NM_002406	4245	Hs.519818	NM_002406	HPRD:01189	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_41206	chr17	36348451	36348615	+	13.97373	NA	promoter-TSS (NM_032258)	promoter-TSS (NM_032258)	74	NM_001291466	102723859	Hs.454716	NM_001291466		LOC102723859	-	TBC1 domain family member-like	protein-coding
19-PTNLD28-TUMOR_peak_37462	chr16	33193760	33193919	+	13.97147	NA	Intergenic	Intergenic	-11744	NR_110897	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_8028	chr1	168090957	168091518	+	13.96794	NA	intron (NM_001267610, intron 1 of 6)	intron (NM_001267610, intron 1 of 6)	14437	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_28884	chr13	102106397	102106534	+	13.96794	NA	intron (NM_001271755, intron 2 of 9)	CpG-6575	1521	NM_001271755	9358	Hs.696554	NM_004791	HPRD:07253	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
19-PTNLD28-TUMOR_peak_106117	chr9	129396588	129396748	+	13.96794	NA	intron (NM_002316, intron 2 of 7)	L2b|LINE|L2	19946	NM_002316	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_44507	chr18	9711990	9712426	+	13.96794	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	3980	NM_006868	11031	Hs.99528	NM_006868	HPRD:05751	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_31302	chr14	75386304	75386494	+	13.96794	NA	intron (NM_031464, intron 3 of 10)	intron (NM_031464, intron 3 of 10)	2746	NM_031464	83694	Hs.414481	NM_031464	HPRD:18004	RPS6KL1	RSKL2	ribosomal protein S6 kinase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_60602	chr20	32384829	32385023	+	13.96794	NA	intron (NR_110623, intron 2 of 3)	L2a|LINE|L2	13979	NR_110623	101929746	Hs.504633	NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14744	chr10	88698962	88699441	+	13.96794	NA	intron (NM_024756, intron 6 of 6)	AluSg|SINE|Alu	18224	NM_024756	79812	Hs.524479	NM_024756	HPRD:10601	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_38005	chr16	56966648	56967079	+	13.96159	NA	intron (NM_001010989, intron 1 of 7)	intron (NM_001010989, intron 1 of 7)	861	NM_001272103	9709	Hs.146393	NM_014685	HPRD:07456	HERPUD1	HERP|Mif1|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding
19-PTNLD28-TUMOR_peak_34303	chr15	70801106	70801283	+	13.96093	NA	Intergenic	MIRb|SINE|MIR	193426	NM_001008224	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_6476	chr1	147504966	147505397	+	13.96093	NA	Intergenic	CpG	-17993	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_46433	chr18	77707153	77707323	+	13.96093	NA	intron (NM_001146343, intron 2 of 3)	intron (NM_001146343, intron 2 of 3)	4415	NM_025078	80148	Hs.288284	NM_025078	HPRD:11454	PQLC1	-	PQ loop repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83088	chr5	148520972	148521388	+	13.95688	NA	promoter-TSS (NM_001301018)	promoter-TSS (NM_001301018)	134	NM_001301028	22885	Hs.49688	NM_014945	HPRD:12411	ABLIM3	-	actin binding LIM protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_55486	chr2	123180078	123180459	+	13.95688	NA	Intergenic	Intergenic	667147	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_91038	chr7	4885473	4885797	+	13.95688	NA	intron (NM_018059, intron 2 of 14)	intron (NM_018059, intron 2 of 14)	15990	NM_020144	56903	Hs.487409	NM_020144	HPRD:08467	PAPOLB	PAPT|TPAP	poly(A) polymerase beta (testis specific)	protein-coding
19-PTNLD28-TUMOR_peak_679	chr1	10401356	10401480	+	13.95688	NA	intron (NM_015074, intron 30 of 46)	intron (NM_015074, intron 30 of 46)	42394	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_70110	chr3	121155565	121155797	+	13.95688	NA	intron (NM_199420, intron 27 of 29)	intron (NM_199420, intron 27 of 29)	109172	NM_199420	10721	Hs.241517	NM_199420	HPRD:10375	POLQ	POLH|PRO0327	polymerase (DNA directed), theta	protein-coding
19-PTNLD28-TUMOR_peak_5138	chr1	99930801	99931037	+	13.95688	NA	Intergenic	L3|LINE|CR1	-180512	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_41360	chr17	38333666	38333958	+	13.95688	NA	promoter-TSS (NM_016339)	promoter-TSS (NM_016339)	-430	NM_016339	51195	Hs.632254	NM_016339	HPRD:17954	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1397	chr1	22647756	22647923	+	13.95688	NA	Intergenic	Intergenic	-130505	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_67421	chr3	32463522	32463958	+	13.95343	NA	intron (NM_181472, intron 1 of 3)	intron (NM_181472, intron 1 of 3)	30577	NM_181472	112616	Hs.440494	NM_138410	HPRD:06988	CMTM7	CKLFSF7	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_1270	chr1	20561319	20561490	+	13.95331	NA	Intergenic	Intergenic	-48425	NR_110078	101928017	Hs.550803	NR_110078		UBXN10-AS1	-	UBXN10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102700	chr9	33373001	33373216	+	13.95331	NA	Intergenic	Intergenic	29409	NM_001170	364	Hs.455323	NM_001170	HPRD:04277	AQP7	AQP7L|AQP9|AQPap|GLYCQTL	aquaporin 7	protein-coding
19-PTNLD28-TUMOR_peak_102786	chr9	34501931	34502283	+	13.95331	NA	intron (NM_001281428, intron 12 of 19)	intron (NM_001281428, intron 12 of 19)	20930	NM_198573	375704	Hs.522085	NM_198573	HPRD:18263	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
19-PTNLD28-TUMOR_peak_46640	chr19	2186015	2186532	+	13.95331	NA	intron (NM_032482, intron 3 of 27)	intron (NM_032482, intron 3 of 27)	22125	NM_032482	84444	Hs.713641	NM_032482	HPRD:10455	DOT1L	DOT1|KMT4	DOT1-like histone H3K79 methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_7750	chr1	162163708	162163859	+	13.95289	NA	intron (NM_001164757, intron 2 of 9)	intron (NM_001164757, intron 2 of 9)	36886	NR_039798	100616386		NR_039798		MIR4654	-	microRNA 4654	ncRNA
19-PTNLD28-TUMOR_peak_16469	chr11	394503	394808	+	13.95230	NA	intron (NM_007183, intron 1 of 12)	intron (NM_007183, intron 1 of 12)	438	NM_007183	11187	Hs.534395	NM_007183	HPRD:05711	PKP3	-	plakophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_56267	chr2	150624040	150624237	+	13.94772	NA	intron (NR_110240, intron 2 of 2)	intron (NR_110240, intron 2 of 2)	-179808	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_83639	chr5	160084326	160084557	+	13.94772	NA	intron (NM_025153, intron 7 of 25)	intron (NM_025153, intron 7 of 25)	172082	NR_029701	406938		NR_029701	miRBase:MI0000477	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
19-PTNLD28-TUMOR_peak_56574	chr2	160457392	160457569	+	13.94772	NA	intron (NM_001289975, intron 1 of 35)	intron (NM_001289975, intron 1 of 35)	-14325	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
19-PTNLD28-TUMOR_peak_76291	chr4	95020511	95020649	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-108179	NM_001128430	56916	Hs.410406	NM_020159	HPRD:11586	SMARCAD1	ADERM|ETL1|HEL1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
19-PTNLD28-TUMOR_peak_16234	chr10	129809704	129809847	+	13.94772	NA	intron (NM_006504, intron 2 of 20)	intron (NM_006504, intron 2 of 20)	-36038	NM_130435	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_75341	chr4	54804147	54804331	+	13.94772	NA	Intergenic	Intergenic	49210	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
19-PTNLD28-TUMOR_peak_31992	chr14	99794336	99794451	+	13.94772	NA	Intergenic	Intergenic	-56343	NM_001282237	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_62136	chr20	53285071	53285311	+	13.94772	NA	Intergenic	MER20|DNA|hAT-Charlie	192934	NM_177959	55816	Hs.473133	NM_018431	HPRD:16317	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
19-PTNLD28-TUMOR_peak_76271	chr4	92120071	92120409	+	13.94772	NA	intron (NM_001145065, intron 10 of 10)	MLT1K|LTR|ERVL-MaLR	964058	NM_207491	401145	Hs.654735	NM_207491	HPRD:17561	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_72726	chr3	183655629	183655917	+	13.94772	NA	exon (NM_005688, exon 26 of 30)	exon (NM_005688, exon 26 of 30)	-53080	NM_001037639	55486	Hs.478469	NM_018622	HPRD:08484	PARL	PSARL|PSARL1|PSENIP2|RHBDS1	presenilin associated, rhomboid-like	protein-coding
19-PTNLD28-TUMOR_peak_94601	chr7	103301081	103301226	+	13.94772	NA	intron (NM_005045, intron 12 of 64)	intron (NM_005045, intron 12 of 64)	-214529	NM_206885	375611	Hs.585146	NM_198999	HPRD:09224	SLC26A5	DFNB61|PRES	solute carrier family 26 (anion exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_67000	chr3	17542233	17542489	+	13.94772	NA	intron (NM_001134381, intron 4 of 23)	L2|LINE|L2	199151	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_91897	chr7	32244099	32244259	+	13.94772	NA	intron (NM_001191058, intron 2 of 18)	intron (NM_001191058, intron 2 of 18)	94837	NM_001191058	5137	Hs.728862	NM_005020	HPRD:04287	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_34213	chr15	69568636	69568744	+	13.94772	NA	Intergenic	Intergenic	-22604	NM_017705	54852	Hs.591096	NM_017705	HPRD:08475	PAQR5	MPRG	progestin and adipoQ receptor family member V	protein-coding
19-PTNLD28-TUMOR_peak_65236	chr22	33725016	33725162	+	13.94772	NA	intron (NM_004737, intron 11 of 15)	intron (NM_004737, intron 11 of 15)	107566	NR_039921	100616295		NR_039921		MIR4764	-	microRNA 4764	ncRNA
19-PTNLD28-TUMOR_peak_80087	chr5	58358950	58359205	+	13.94772	NA	intron (NM_001104631, intron 5 of 14)	intron (NM_001104631, intron 5 of 14)	-23738	NM_001197222	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_74777	chr4	24644611	24644937	+	13.94772	NA	Intergenic	Intergenic	-58590	NM_001358	1665	Hs.696074	NM_001358	HPRD:04553	DHX15	DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p	DEAH (Asp-Glu-Ala-His) box helicase 15	protein-coding
19-PTNLD28-TUMOR_peak_98347	chr8	40071788	40072023	+	13.94772	NA	Intergenic	Intergenic	60918	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_103671	chr9	71700893	71701110	+	13.94772	NA	intron (NM_001161706, intron 4 of 4)	MER72|LTR|ERV1	-35179	NM_001170414	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_34829	chr15	82189754	82189911	+	13.94772	NA	Intergenic	LTR67B|LTR|ERVL	148652	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_3485	chr1	52102823	52103110	+	13.94772	NA	intron (NM_148906, intron 1 of 22)	AluSq|SINE|Alu	20420	NM_148906	114883	Hs.21938	NM_024586	HPRD:09479	OSBPL9	ORP-9|ORP9	oxysterol binding protein-like 9	protein-coding
19-PTNLD28-TUMOR_peak_69977	chr3	116489758	116489969	+	13.94772	NA	Intergenic	Intergenic	61228	NR_015391	285194	Hs.120364	NR_015391		TUSC7	LINC00902|LSAMP-AS1|LSAMP-AS3|NCRNA00295	tumor suppressor candidate 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23786	chr12	39861983	39862103	+	13.94772	NA	Intergenic	AluY|SINE|Alu	-24851	NM_001173465	55605	Hs.374201	NM_017641	HPRD:10506	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
19-PTNLD28-TUMOR_peak_9103	chr1	199744016	199744137	+	13.94772	NA	Intergenic	L2b|LINE|L2	-252654	NM_003822	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_76585	chr4	110889084	110889232	+	13.94772	NA	intron (NM_001963, intron 10 of 23)	Tigger3c|DNA|TcMar-Tigger	55118	NM_001178130	1950	Hs.419815	NM_001963	HPRD:00578	EGF	HOMG4|URG	epidermal growth factor	protein-coding
19-PTNLD28-TUMOR_peak_25444	chr12	80715521	80715705	+	13.94772	NA	intron (NM_173591, intron 33 of 57)	MER70A|LTR|ERVL	112380	NM_173591	283310	Hs.723594	NM_173591	HPRD:08815	OTOGL	C12orf64|DFNB84B	otogelin-like	protein-coding
19-PTNLD28-TUMOR_peak_59798	chr20	10720348	10720463	+	13.94772	NA	Intergenic	Intergenic	-13333	NR_110611	101929395	Hs.244862	NR_110611		LOC101929395	-	uncharacterized LOC101929395	ncRNA
19-PTNLD28-TUMOR_peak_76192	chr4	88770290	88770417	+	13.94772	NA	Intergenic	Intergenic	14498	NM_001291183	56955	Hs.676357	NM_020203	HPRD:06908	MEPE	OF45	matrix extracellular phosphoglycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_104828	chr9	99559755	99559883	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-19491	NM_014930	22869	Hs.75264	NM_014930	HPRD:18348	ZNF510	-	zinc finger protein 510	protein-coding
19-PTNLD28-TUMOR_peak_36860	chr16	23702950	23703093	+	13.94772	NA	intron (NM_033266, intron 19 of 21)	MIRb|SINE|MIR	12820	NM_005030	5347	Hs.592049	NM_005030	HPRD:03652	PLK1	PLK|STPK13	polo-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_90277	chr6	158642029	158642140	+	13.94772	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	52705	NM_207118	404672	Hs.356224	NM_207118	HPRD:10581	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2	general transcription factor IIH, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_109287	chrX	118557722	118557850	+	13.94772	NA	intron (NM_145305, intron 3 of 4)	U1|snRNA|snRNA	24528	NM_145305	203427	Hs.496658	NM_145305	HPRD:06617	SLC25A43	-	solute carrier family 25, member 43	protein-coding
19-PTNLD28-TUMOR_peak_65102	chr22	31097933	31098171	+	13.94772	NA	intron (NM_030758, intron 1 of 13)	intron (NM_030758, intron 1 of 13)	7259	NM_030758	23762	Hs.517546	NM_030758	HPRD:09471	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_25578	chr12	93048809	93048942	+	13.94772	NA	Intergenic	Intergenic	-47744	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
19-PTNLD28-TUMOR_peak_82023	chr5	129471343	129471457	+	13.94772	NA	intron (NM_175856, intron 2 of 2)	intron (NM_175856, intron 2 of 2)	230877	NM_175856	337876	Hs.213137	NM_175856	HPRD:16766	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_91728	chr7	26707196	26707365	+	13.94772	NA	3' UTR (NM_003930, exon 13 of 13)	3' UTR (NM_003930, exon 13 of 13)	29790	NM_001145531	285941	Hs.413394	NM_001145531	ENSG00000222004	C7orf71	-	chromosome 7 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_69988	chr3	116997853	116998000	+	13.94772	NA	Intergenic	Intergenic	357648	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_42354	chr17	51826690	51826807	+	13.94772	NA	Intergenic	LTR16A2|LTR|ERVL	-73491	NM_032559	84643	Hs.226805	NM_032559	HPRD:10053	KIF2B	-	kinesin family member 2B	protein-coding
19-PTNLD28-TUMOR_peak_97140	chr8	10910903	10911082	+	13.94772	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	-18180	NR_030328	693183		NR_030328		MIR598	MIRN598|hsa-mir-598	microRNA 598	ncRNA
19-PTNLD28-TUMOR_peak_79847	chr5	52599030	52599288	+	13.94772	NA	Intergenic	Intergenic	-177105	NM_006350	10468	Hs.9914	NM_006350	HPRD:00641	FST	FS	follistatin	protein-coding
19-PTNLD28-TUMOR_peak_65730	chr22	42584907	42585064	+	13.94772	NA	intron (NM_181492, intron 1 of 3)	L2c|LINE|L2	26362	NM_181492	6942	Hs.475018	NM_005650	HPRD:04378	TCF20	AR1|SPBP|TCF-20	transcription factor 20 (AR1)	protein-coding
19-PTNLD28-TUMOR_peak_106105	chr9	129067051	129067168	+	13.94772	NA	Intergenic	MER45B|DNA|hAT-Tip100	-22014	NM_001011703	89853	Hs.162659	NM_033446	HPRD:12952	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_21697	chr11	121466464	121466734	+	13.94772	NA	intron (NM_003105, intron 32 of 47)	intron (NM_003105, intron 32 of 47)	143687	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_31540	chr14	82099871	82100143	+	13.94772	NA	Intergenic	L2a|LINE|L2	-10602	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
19-PTNLD28-TUMOR_peak_109052	chrX	103733638	103733773	+	13.94772	NA	Intergenic	Intergenic	-77291	NM_017416	26280	Hs.675519	NM_017416	HPRD:02231	IL1RAPL2	IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1	interleukin 1 receptor accessory protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_28956	chr13	106691209	106691421	+	13.94772	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	332136	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_68429	chr3	54121662	54122134	+	13.94772	NA	Intergenic	CpG	-34795	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_40255	chr17	13513389	13513600	+	13.94772	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-8250	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_45823	chr18	52337007	52337133	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	78680	NM_173629	284254	Hs.376146	NM_173629	HPRD:08251	DYNAP	C18orf26	dynactin associated protein	protein-coding
19-PTNLD28-TUMOR_peak_34252	chr15	70265600	70265715	+	13.94772	NA	Intergenic	Intergenic	106150	NR_030714	693214		NR_030714		MIR629	MIRN629|hsa-mir-629	microRNA 629	ncRNA
19-PTNLD28-TUMOR_peak_79860	chr5	53467909	53468107	+	13.94772	NA	intron (NM_019087, intron 1 of 4)	L1MC4|LINE|L1	138395	NM_019087	54622	Hs.659125	NM_019087	HPRD:12471	ARL15	ARFRP2	ADP-ribosylation factor-like 15	protein-coding
19-PTNLD28-TUMOR_peak_34437	chr15	74200750	74200869	+	13.94772	NA	Intergenic	Intergenic	-17980	NM_005576	4016	Hs.65436	NM_005576	HPRD:08861	LOXL1	LOL|LOXL	lysyl oxidase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_107380	chrX	2553462	2553631	+	13.94772	NA	intron (NR_033380, intron 8 of 8)	intron (NR_033380, intron 8 of 8)	-20158	NR_037842	100359394	Hs.571720	NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
19-PTNLD28-TUMOR_peak_5903	chr1	118277793	118277925	+	13.94772	NA	Intergenic	Intergenic	129255	NM_017709	54855	Hs.356216	NM_017709	HPRD:13312	FAM46C	-	family with sequence similarity 46, member C	protein-coding
19-PTNLD28-TUMOR_peak_15028	chr10	97360959	97361222	+	13.94772	NA	Intergenic	Intergenic	-39913	NM_001290294	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_108322	chrX	50391247	50391413	+	13.94772	NA	intron (NM_020717, intron 2 of 8)	intron (NM_020717, intron 2 of 8)	165714	NR_027121	57477	Hs.420541	NM_020717	HPRD:17209	SHROOM4	SHAP	shroom family member 4	protein-coding
19-PTNLD28-TUMOR_peak_100161	chr8	116089018	116089182	+	13.94772	NA	Intergenic	Intergenic	591139	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_9057	chr1	197593942	197594037	+	13.94772	NA	intron (NM_001300858, intron 10 of 15)	L1PA3|LINE|L1	150634	NM_001300858	163486	Hs.125056	NM_019049	HPRD:13303	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_52857	chr2	55783184	55783364	+	13.94772	NA	intron (NM_001282850, intron 15 of 15)	intron (NM_001282850, intron 15 of 15)	36543	NM_001282761	112942	Hs.264208	NM_080667	HPRD:14445	CFAP36	CCDC104	cilia and flagella associated protein 36	protein-coding
19-PTNLD28-TUMOR_peak_69549	chr3	106407405	106407566	+	13.94772	NA	Intergenic	Intergenic	552000	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_106342	chr9	131999555	131999698	+	13.94772	NA	Intergenic	Intergenic	-45069	NR_121587	101929331	Hs.522428	NR_121587	ENSG00000224307	LOC101929331	-	uncharacterized LOC101929331	ncRNA
19-PTNLD28-TUMOR_peak_102233	chr9	14366136	14366249	+	13.94772	NA	intron (NM_001190738, intron 1 of 8)	intron (NM_001190738, intron 1 of 8)	32790	NM_001190738	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_35079	chr15	88021398	88021539	+	13.94772	NA	Intergenic	Intergenic	-98692	NR_026869	145978	Hs.350808	NM_152454	HPRD:08101	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
19-PTNLD28-TUMOR_peak_91432	chr7	18448147	18448393	+	13.94772	NA	intron (NM_001204144, intron 2 of 12)	intron (NM_001204144, intron 2 of 12)	-87099	NM_001204146	9734	Hs.196054	NM_014707	HPRD:05944	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
19-PTNLD28-TUMOR_peak_105048	chr9	104221437	104221601	+	13.94772	NA	Intergenic	Intergenic	-9202	NR_121576	101928470	Hs.656088	NR_121573	ENSG00000225376	TMEM246-AS1	-	TMEM246 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78110	chr4	176340663	176340864	+	13.94772	NA	Intergenic	MLT2B4|LTR|ERVL	368064	NM_001261448	2823	Hs.75819	NM_005277	HPRD:03174	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
19-PTNLD28-TUMOR_peak_52922	chr2	59400235	59400367	+	13.94772	NA	Intergenic	LTR13A|LTR|ERVK	-44542	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LOC101927285	-	uncharacterized LOC101927285	ncRNA
19-PTNLD28-TUMOR_peak_107694	chrX	17821554	17821798	+	13.94772	NA	intron (NM_001172732, intron 1 of 2)	(GAAAA)n|Simple_repeat|Simple_repeat	57271	NR_033348	10742	Hs.446680	NM_021785	HPRD:02199	RAI2	-	retinoic acid induced 2	protein-coding
19-PTNLD28-TUMOR_peak_83921	chr5	171252180	171252322	+	13.94772	NA	Intergenic	Intergenic	39375	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
19-PTNLD28-TUMOR_peak_24007	chr12	47821139	47821254	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-210970	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_85403	chr6	12174005	12174154	+	13.94772	NA	Intergenic	Intergenic	-116450	NM_001168319	1906	Hs.511899	NM_001955	HPRD:07030	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
19-PTNLD28-TUMOR_peak_79934	chr5	55117663	55117960	+	13.94772	NA	Intergenic	CpG	-29396	NM_001242638	133396	Hs.55378	NM_139017	HPRD:17145	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R	interleukin 31 receptor A	protein-coding
19-PTNLD28-TUMOR_peak_70202	chr3	122977747	122977965	+	13.94772	NA	intron (NM_012430, intron 5 of 6)	intron (NM_012430, intron 5 of 6)	57082	NM_012430	26984	Hs.477361	NM_012430		SEC22A	SEC22L2	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_76630	chr4	112610417	112610590	+	13.94772	NA	Intergenic	HAL1b|LINE|L1	-456050	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_15839	chr10	118513370	118513714	+	13.94772	NA	Intergenic	Intergenic	-11457	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
19-PTNLD28-TUMOR_peak_30217	chr14	50809580	50809705	+	13.94772	NA	intron (NM_001282236, intron 4 of 8)	intron (NM_001282236, intron 4 of 8)	30595	NR_033761	27109	Hs.438489	NM_015684	HPRD:12503	ATP5S	ATPW|FB|HSU79253	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)	protein-coding
19-PTNLD28-TUMOR_peak_104176	chr9	86092590	86092720	+	13.94772	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	-9998	NM_001244960	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_59331	chr2	242730921	242731059	+	13.94772	NA	intron (NM_022134, intron 1 of 3)	MER4-int|LTR|ERV1	14750	NM_022134	64090	Hs.632556	NM_022134	HPRD:16303	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_25737	chr12	97929533	97929702	+	13.94772	NA	Intergenic	Intergenic	-27973	NR_029678	406926		NR_029678	miRBase:MI0000453	MIR135A2	MIRN135-2|MIRN135A2	microRNA 135a-2	ncRNA
19-PTNLD28-TUMOR_peak_75512	chr4	61590426	61590624	+	13.94772	NA	Intergenic	LTR16A2|LTR|ERVL	-772314	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_56566	chr2	160128793	160128917	+	13.94772	NA	intron (NM_152528, intron 4 of 10)	LTR64|LTR|ERV1	14208	NM_152528	151525	Hs.20848	NM_152528	HPRD:08773	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23932	chr12	46527621	46527892	+	13.94772	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	132522	NM_001278389	81539	Hs.533770	NM_030674	HPRD:12245	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38, member 1	protein-coding
19-PTNLD28-TUMOR_peak_99316	chr8	81446753	81446944	+	13.94772	NA	Intergenic	Intergenic	48400	NM_001105539	65986	Hs.591868	NM_023929	HPRD:15689	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_89268	chr6	119034213	119034340	+	13.94772	NA	Intergenic	Intergenic	-3038	NM_001178035	387119	Hs.656959	NM_206921	HPRD:12874	CEP85L	C6orf204|NY-BR-15|bA57K17.2	centrosomal protein 85kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_58859	chr2	232765279	232765435	+	13.94772	NA	Intergenic	CpG	-8349	NR_031717	100302126		NR_031717	miRBase:MI0007076	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
19-PTNLD28-TUMOR_peak_69633	chr3	108132983	108133142	+	13.94772	NA	intron (NM_014981, intron 31 of 41)	intron (NM_014981, intron 31 of 41)	102430	NM_001282557	11148	Hs.252351	NM_007072	HPRD:05082	HHLA2	B7H7	HERV-H LTR-associating 2	protein-coding
19-PTNLD28-TUMOR_peak_8138	chr1	170658791	170658925	+	13.94772	NA	intron (NM_006902, intron 1 of 4)	intron (NM_006902, intron 1 of 4)	25545	NM_022716	5396	Hs.283416	NM_006902	HPRD:01337	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_108898	chrX	89713277	89713398	+	13.94772	NA	Intergenic	LTR4|LTR|ERV1	536397	NM_138960	90316	Hs.592220	NM_138960	HPRD:02328	TGIF2LX	TGIFLX	TGFB-induced factor homeobox 2-like, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_56762	chr2	165824326	165824663	+	13.94772	NA	Intergenic	MER57E1|LTR|ERV1	-12459	NM_173512	151258	Hs.658702	NM_173512	HPRD:08267	SLC38A11	AVT2	solute carrier family 38, member 11	protein-coding
19-PTNLD28-TUMOR_peak_21907	chr11	125677900	125678097	+	13.94772	NA	Intergenic	L1M1|LINE|L1	19992	NM_001129883	100169851	Hs.131278	NM_001129883	ENSG00000236027	PATE3	HEL-127|PATE-DJ	prostate and testis expressed 3	protein-coding
19-PTNLD28-TUMOR_peak_104014	chr9	80596325	80596437	+	13.94772	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	49984	NM_002072	2776	Hs.269782	NM_002072		GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	guanine nucleotide binding protein (G protein), q polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_89327	chr6	124544879	124545049	+	13.94772	NA	intron (NM_001300737, intron 2 of 7)	intron (NM_001300737, intron 2 of 7)	-59187	NM_001300740	154215	Hs.656604	NM_153355	HPRD:18168	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Na+/K+ transporting ATPase interacting 2	protein-coding
19-PTNLD28-TUMOR_peak_34508	chr15	74988167	74988643	+	13.94772	NA	promoter-TSS (NM_025083)	promoter-TSS (NM_025083)	-19	NM_001142444	80153	Hs.96852	NM_025083	HPRD:07954	EDC3	LSM16|YJDC|YJEFN2	enhancer of mRNA decapping 3	protein-coding
19-PTNLD28-TUMOR_peak_18618	chr11	56982119	56982226	+	13.94772	NA	Intergenic	Intergenic	22755	NR_027991	187	Hs.438311	NM_005161	HPRD:02503	APLNR	AGTRL1|APJ|APJR|HG11	apelin receptor	protein-coding
19-PTNLD28-TUMOR_peak_98707	chr8	51290659	51290850	+	13.94772	NA	intron (NM_001287813, intron 3 of 19)	MER52A|LTR|ERV1	466415	NM_018967	54212	Hs.584914	NM_018967	HPRD:16373	SNTG1	G1SYN|SYN4	syntrophin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_15826	chr10	117943389	117943515	+	13.94772	NA	intron (NM_145793, intron 3 of 8)	intron (NM_145793, intron 3 of 8)	88367	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_51455	chr2	20578923	20579183	+	13.94772	NA	Intergenic	Intergenic	-28442	NM_015317	23369	Hs.467824	NM_015317	HPRD:09527	PUM2	PUMH2|PUML2	pumilio RNA-binding family member 2	protein-coding
19-PTNLD28-TUMOR_peak_69471	chr3	101522166	101522325	+	13.94772	NA	intron (NM_145037, intron 5 of 7)	intron (NM_145037, intron 5 of 7)	23959	NM_001134456	91775	Hs.595933	NM_145037	HPRD:10073	NXPE3	FAM55C|MST115	neurexophilin and PC-esterase domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_97266	chr8	13134073	13134249	+	13.94772	NA	intron (NM_182643, intron 5 of 17)	CpG	-143352	NM_006094	10395	Hs.134296	NM_006094	HPRD:05035	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_93756	chr7	84879626	84879761	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	-128446	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_105156	chr9	109444780	109445060	+	13.94772	NA	Intergenic	Intergenic	66581	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234229	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
19-PTNLD28-TUMOR_peak_29686	chr14	30274919	30275127	+	13.94772	NA	intron (NM_002742, intron 1 of 17)	intron (NM_002742, intron 1 of 17)	-100415	NR_039672	100616347		NR_039672	miRBase:MI0016813	MIR548AI	-	microRNA 548ai	ncRNA
19-PTNLD28-TUMOR_peak_52087	chr2	36082713	36082900	+	13.94772	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	499907	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_108341	chrX	51279844	51279947	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-29602	NR_110654	102723426	Hs.584513	NR_110654		LINC01496	-	long intergenic non-protein coding RNA 1496	ncRNA
19-PTNLD28-TUMOR_peak_76013	chr4	83786809	83787028	+	13.94772	NA	intron (NM_001300744, intron 10 of 23)	L1MB2|LINE|L1	25417	NM_001191049	22872	Hs.370024	NM_014933	HPRD:15314	SEC31A	ABP125|ABP130|HSPC334|SEC31L1	SEC31 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_22011	chr11	127795401	127795694	+	13.94772	NA	Intergenic	Intergenic	596658	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_32130	chr14	102701769	102701901	+	13.94772	NA	intron (NM_014226, intron 7 of 11)	HERVFH21-int|LTR|ERV1	5123	NR_073542	5891	Hs.104119	NM_014226	HPRD:09310	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_577	chr1	9202438	9202566	+	13.94772	NA	Intergenic	Intergenic	9334	NR_029610	407040	Hs.730325	NR_029610	miRBase:MI0000268	MIR34A	MIRN34A|miRNA34A|mir-34	microRNA 34a	ncRNA
19-PTNLD28-TUMOR_peak_13740	chr10	60679807	60679935	+	13.94772	NA	Intergenic	Intergenic	-79407	NR_108046	100507008	Hs.170953	NR_108046		LINC00844	-	long intergenic non-protein coding RNA 844	ncRNA
19-PTNLD28-TUMOR_peak_67921	chr3	46401724	46401928	+	13.94772	NA	TTS (NM_001123396)	TTS (NM_001123396)	6591	NM_001123396	729230	Hs.511794	NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R	chemokine (C-C motif) receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_68560	chr3	57875588	57875740	+	13.94772	NA	intron (NM_007159, intron 11 of 20)	intron (NM_007159, intron 11 of 20)	-118463	NM_001457	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_68725	chr3	63350360	63350495	+	13.94772	NA	intron (NM_001130003, intron 2 of 5)	MER5A|DNA|hAT-Charlie	-78326	NM_144642	132204	Hs.648668	NM_144642	HPRD:15458	SYNPR	SPO	synaptoporin	protein-coding
19-PTNLD28-TUMOR_peak_89301	chr6	121825427	121825575	+	13.94772	NA	Intergenic	Intergenic	68778	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_29633	chr14	25257074	25257272	+	13.94772	NA	Intergenic	L2c|LINE|L2	-153741	NM_004131	3002	Hs.1051	NM_004131	HPRD:00476	GZMB	CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)	protein-coding
19-PTNLD28-TUMOR_peak_83954	chr5	171854218	171854485	+	13.94772	NA	intron (NM_001017995, intron 1 of 12)	AluJr|SINE|Alu	27176	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_83057	chr5	147949545	147949830	+	13.94772	NA	intron (NM_001286410, intron 1 of 5)	intron (NM_001286410, intron 1 of 5)	66937	NM_001286410	3360	Hs.483773	NM_000870	ENSG00000164270	HTR4	5-HT4|5-HT4R	5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_25285	chr12	71786450	71786583	+	13.94772	NA	Intergenic	Intergenic	-47034	NM_003667	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_83693	chr5	167050493	167050688	+	13.94772	NA	intron (NM_001122679, intron 2 of 28)	intron (NM_001122679, intron 2 of 28)	338747	NM_001122679	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_92349	chr7	45387537	45387706	+	13.94772	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	190254	NM_005856	10268	Hs.25691	NM_005856	HPRD:05517	RAMP3	-	receptor (G protein-coupled) activity modifying protein 3	protein-coding
19-PTNLD28-TUMOR_peak_15106	chr10	99278135	99278280	+	13.94772	NA	intron (NM_024954, intron 1 of 2)	intron (NM_024954, intron 1 of 2)	19568	NM_024954	80019	Hs.500724	NM_024954	HPRD:08568	UBTD1	-	ubiquitin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_41424	chr17	39260966	39261137	+	13.94772	NA	promoter-TSS (NM_001146041)	promoter-TSS (NM_001146041)	-590	NM_001146041	100132386	Hs.307018	NM_001146041	ENSG00000212722	KRTAP4-9	KAP4.9	keratin associated protein 4-9	protein-coding
19-PTNLD28-TUMOR_peak_45734	chr18	47883674	47883900	+	13.94772	NA	Intergenic	Intergenic	-17605	NM_145060	220134	Hs.134726	NM_145060	HPRD:12689	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_94951	chr7	117791861	117792045	+	13.94772	NA	Intergenic	L2a|LINE|L2	-32133	NM_016200	51691	Hs.655046	NM_016200		LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_91742	chr7	27547650	27547772	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-107882	NR_122122	790953	Hs.571330	NR_122122		TSL	-	testis-expressed, seven-twelve, leukemia	ncRNA
19-PTNLD28-TUMOR_peak_23447	chr12	26088754	26088932	+	13.94772	NA	Intergenic	Intergenic	21675	NR_038227	100506451	Hs.560092	NR_038227		RASSF8-AS1	-	RASSF8 atnisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27811	chr13	34781608	34781782	+	13.94772	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	389489	NM_181558	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_51669	chr2	26661483	26661664	+	13.94772	NA	intron (NM_145038, intron 7 of 16)	intron (NM_145038, intron 7 of 16)	36789	NM_145038	92749	Hs.393714	NM_145038	HPRD:11312	DRC1	C2orf39|CCDC164|CILD21	dynein regulatory complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_25862	chr12	103025183	103025428	+	13.94772	NA	Intergenic	Intergenic	-150927	NM_001111283	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_23931	chr12	46483608	46483822	+	13.94772	NA	Intergenic	LTR38-int|LTR|ERV1	-99314	NM_004719	9169	Hs.210367	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
19-PTNLD28-TUMOR_peak_72829	chr3	184943366	184943587	+	13.94772	NA	intron (NM_001166415, intron 4 of 6)	L2a|LINE|L2	27584	NR_106712	100847054		NR_106712		MIR5588	-	microRNA 5588	ncRNA
19-PTNLD28-TUMOR_peak_108039	chrX	41765897	41766380	+	13.94772	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	16149	NM_001126055	8573	Hs.495984	NM_003688	HPRD:02164	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
19-PTNLD28-TUMOR_peak_80873	chr5	78373925	78374039	+	13.94772	NA	intron (NM_001178005, intron 2 of 6)	intron (NM_001178005, intron 2 of 6)	8435	NM_017614	23743	Hs.114172	NM_017614		BHMT2	-	betaine--homocysteine S-methyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_82680	chr5	140474143	140474328	+	13.94772	NA	promoter-TSS (NM_018936)	promoter-TSS (NM_018936)	44	NM_018936	56133	Hs.533023	NM_018936	HPRD:07558	PCDHB2	PCDH-BETA2	protocadherin beta 2	protein-coding
19-PTNLD28-TUMOR_peak_58652	chr2	225965805	225965976	+	13.94772	NA	Intergenic	Intergenic	-58560	NM_014689	55619	Hs.46578	NM_014689	HPRD:10919	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
19-PTNLD28-TUMOR_peak_71480	chr3	144736906	144737108	+	13.94772	NA	Intergenic	MER115|DNA|hAT-Tip100	1044840	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_65238	chr22	33801259	33801450	+	13.94772	NA	intron (NM_004737, intron 8 of 15)	L2a|LINE|L2	31301	NR_039921	100616295		NR_039921		MIR4764	-	microRNA 4764	ncRNA
19-PTNLD28-TUMOR_peak_80537	chr5	70820611	70820730	+	13.94772	NA	intron (NM_018429, intron 25 of 38)	SVA_D|Other|Other	-62445	NM_022132	64087	Hs.604789	NM_022132	HPRD:01952	MCCC2	MCCB	methylcrotonoyl-CoA carboxylase 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_53377	chr2	70926099	70926290	+	13.94772	NA	intron (NM_017482, intron 4 of 12)	L1M6|LINE|L1	68653	NM_001185054	119	Hs.188528	NM_001617	HPRD:00037	ADD2	ADDB	adducin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_81825	chr5	123056750	123056931	+	13.94772	NA	Intergenic	Intergenic	175729	NM_004384	1456	Hs.129206	NM_004384	HPRD:05034	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
19-PTNLD28-TUMOR_peak_75346	chr4	54951565	54951755	+	13.94772	NA	Intergenic	Intergenic	-14588	NM_133267	170825	Hs.371899	NM_133267		GSX2	GSH2	GS homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_55629	chr2	129813939	129814182	+	13.94772	NA	Intergenic	Intergenic	191886	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_23409	chr12	24754031	24754214	+	13.94772	NA	Intergenic	Intergenic	-17020	NR_029451	144360	Hs.350668	NM_144667	HPRD:08738	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
19-PTNLD28-TUMOR_peak_79082	chr5	16005484	16005607	+	13.94772	NA	Intergenic	Intergenic	174352	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_76036	chr4	84188712	84188869	+	13.94772	NA	exon (NM_015697, exon 6 of 7)	exon (NM_015697, exon 6 of 7)	17277	NM_015697	27235	Hs.144304	NM_015697	HPRD:13062	COQ2	CL640|COQ10D1|MSA1	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_109491	chrX	131871918	131872172	+	13.94772	NA	intron (NM_001077188, intron 3 of 5)	intron (NM_001077188, intron 3 of 5)	70375	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20634	chr11	94296776	94296922	+	13.94772	NA	Intergenic	MER20|DNA|hAT-Charlie	-3625	NM_152431	143689	Hs.660188	NM_152431	HPRD:11435	PIWIL4	HIWI2|MIWI2	piwi-like RNA-mediated gene silencing 4	protein-coding
19-PTNLD28-TUMOR_peak_60074	chr20	19643025	19643274	+	13.94772	NA	intron (NM_020689, intron 7 of 16)	intron (NM_020689, intron 7 of 16)	-224016	NM_001242581	54453	Hs.472270	NM_018993	HPRD:15249	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
19-PTNLD28-TUMOR_peak_76738	chr4	118843576	118843693	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-111866	NM_004784	9348	Hs.480596	NM_004784	ENSG00000164100	NDST3	HSST3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
19-PTNLD28-TUMOR_peak_22030	chr11	128160045	128160194	+	13.94772	NA	Intergenic	Intergenic	232086	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_98934	chr8	60086633	60086741	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-54920	NM_014729	9760	Hs.491805	NM_014729	HPRD:12113	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
19-PTNLD28-TUMOR_peak_65174	chr22	32297191	32297388	+	13.94772	NA	intron (NR_110988, intron 36 of 38)	AluJb|SINE|Alu	-43190	NM_003405	7533	Hs.226755	NM_003405	HPRD:00215	YWHAH	YWHA1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta	protein-coding
19-PTNLD28-TUMOR_peak_19851	chr11	71894577	71894733	+	13.94772	NA	Intergenic	Intergenic	-5947	NM_016725	2348	Hs.73769	NM_000802	HPRD:00638	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
19-PTNLD28-TUMOR_peak_99170	chr8	71612969	71613079	+	13.94772	NA	intron (NM_001287258, intron 4 of 5)	L1PA3|LINE|L1	31342	NM_001287260	389668	Hs.458938	NM_001011720	HPRD:18309	XKR9	XRG9	XK, Kell blood group complex subunit-related family, member 9	protein-coding
19-PTNLD28-TUMOR_peak_85675	chr6	16752823	16752955	+	13.94772	NA	intron (NM_001128164, intron 2 of 7)	intron (NM_001128164, intron 2 of 7)	8832	NM_001128164	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_56243	chr2	150011720	150012014	+	13.94772	NA	intron (NM_177964, intron 2 of 6)	intron (NM_177964, intron 2 of 6)	116886	NM_177964	130576	Hs.357567	NM_177964	HPRD:14045	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_17750	chr11	27956467	27956596	+	13.94772	NA	Intergenic	Intergenic	-121831	NR_030341	693195		NR_030341	miRBase:MI0003623	MIR610	MIRN610|hsa-mir-610	microRNA 610	ncRNA
19-PTNLD28-TUMOR_peak_110116	chrY	2503462	2503631	+	13.94772	NA	intron (NR_033380, intron 8 of 8).2	intron (NR_033380, intron 8 of 8).2	26240	NR_033381	401577	Hs.444541	NR_033380	ENSG00000223773	CD99P1	CD99L1|CXYorf12|MIC2R|NCRNA00103	CD99 molecule pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_12342	chr10	22375723	22375857	+	13.94772	NA	Intergenic	Intergenic	-83140	NM_022365	64215	Hs.499000	NM_022365	HPRD:09922	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ (Hsp40) homolog, subfamily C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_77013	chr4	128858239	128858417	+	13.94772	NA	intron (NM_152778, intron 8 of 12)	intron (NM_152778, intron 8 of 12)	-28133	NM_001039717	80167	Hs.445817	NM_025097	HPRD:07953	C4orf29	-	chromosome 4 open reading frame 29	protein-coding
19-PTNLD28-TUMOR_peak_29011	chr13	109864067	109864205	+	13.94772	NA	Intergenic	Intergenic	-44485	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24501	chr12	54095669	54095806	+	13.94772	NA	Intergenic	Intergenic	-25225	NM_001002031	517	Hs.524464	NM_005176	HPRD:04429	ATP5G2	ATP5A	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_98615	chr8	48253293	48253421	+	13.94772	NA	intron (NR_104581, intron 5 of 16)	MER21C|LTR|ERVL	79887	NM_001080394	23514	Hs.381058	NM_001080394	ENSG00000164808	SPIDR	KIAA0146	scaffolding protein involved in DNA repair	protein-coding
19-PTNLD28-TUMOR_peak_72218	chr3	169067240	169067452	+	13.94772	NA	intron (NM_001205194, intron 1 of 15)	intron (NM_001205194, intron 1 of 15)	-201824	NM_001164000	2122	Hs.744090	NM_004991	HPRD:01310	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
19-PTNLD28-TUMOR_peak_9026	chr1	196032588	196032746	+	13.94772	NA	Intergenic	Intergenic	518944	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_91974	chr7	34381007	34381149	+	13.94772	NA	Intergenic	Intergenic	-316773	NM_001300934	387129	Hs.652373	NM_207172	HPRD:10547	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_45026	chr18	24993850	24993977	+	13.94772	NA	Intergenic	Intergenic	-228611	NM_031422	83539	Hs.44584	NM_031422	ENSG00000154080	CHST9	GALNAC4ST-2	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
19-PTNLD28-TUMOR_peak_107946	chrX	38217127	38217269	+	13.94772	NA	intron (NM_000531, intron 1 of 9)	intron (NM_000531, intron 1 of 9)	5462	NM_000531	5009	Hs.117050	NM_000531	HPRD:02408	OTC	OCTD	ornithine carbamoyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_89903	chr6	149022066	149022176	+	13.94772	NA	Intergenic	Intergenic	-46150	NM_005715	10090	Hs.657370	NM_005715	HPRD:10298	UST	2OST	uronyl-2-sulfotransferase	protein-coding
19-PTNLD28-TUMOR_peak_58250	chr2	215548511	215548957	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	125701	NR_104215	580	Hs.591642	NM_000465	HPRD:03354	BARD1	-	BRCA1 associated RING domain 1	protein-coding
19-PTNLD28-TUMOR_peak_45132	chr18	29954084	29954266	+	13.94772	NA	intron (NM_001242409, intron 2 of 5)	intron (NM_001242409, intron 2 of 5)	96272	NM_022751	64762	Hs.444314	NM_022751	HPRD:12685	GAREM	C18orf11|FAM59A|Gm944	GRB2 associated, regulator of MAPK1	protein-coding
19-PTNLD28-TUMOR_peak_12607	chr10	28623310	28623489	+	13.94772	NA	Intergenic	Intergenic	-45120	NR_107053	102465880		NR_107053		MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
19-PTNLD28-TUMOR_peak_59181	chr2	240179321	240179439	+	13.94772	NA	intron (NM_006037, intron 2 of 26)	L1MEg|LINE|L1	-47777	NR_036229	100423043		NR_036229	miRBase:MI0015875	MIR4269	-	microRNA 4269	ncRNA
19-PTNLD28-TUMOR_peak_96967	chr8	7281859	7282059	+	13.94772	NA	Intergenic	Intergenic	5911	NM_001081551	414325	Hs.283082	NM_001081551	ENSG00000176797	DEFB103A	BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3|hBD-3	defensin, beta 103A	protein-coding
19-PTNLD28-TUMOR_peak_67505	chr3	36690191	36690390	+	13.94772	NA	Intergenic	Intergenic	91062	NM_033403	85443	Hs.631907	NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_91981	chr7	34706813	34707276	+	13.94772	NA	intron (NM_001300933, intron 1 of 8)	intron (NM_001300933, intron 1 of 8)	9147	NM_207172	387129	Hs.652373	NM_207172	HPRD:10547	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_21468	chr11	117924207	117924351	+	13.94772	NA	intron (NR_038318, intron 2 of 3)	intron (NR_038318, intron 2 of 3)	-23448	NM_019894	56649	Hs.161985	NM_019894		TMPRSS4	CAPH2|MT-SP2|TMPRSS3	transmembrane protease, serine 4	protein-coding
19-PTNLD28-TUMOR_peak_46187	chr18	66457538	66457641	+	13.94772	NA	intron (NM_001093729, intron 3 of 9)	L1PA2|LINE|L1	-7728	NM_024781	79839	Hs.280781	NM_024781	HPRD:08038	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
19-PTNLD28-TUMOR_peak_67016	chr3	17882850	17882957	+	13.94772	NA	Intergenic	Intergenic	-100504	NM_014744	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_78151	chr4	181854965	181855112	+	13.94772	NA	Intergenic	Intergenic	225264	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
19-PTNLD28-TUMOR_peak_72151	chr3	164903622	164903751	+	13.94772	NA	TTS (NM_014926)	TTS (NM_014926)	10783	NM_014926	22865	Hs.101745	NM_014926	HPRD:18064	SLITRK3	-	SLIT and NTRK-like family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_38694	chr16	74141815	74142043	+	13.94772	NA	Intergenic	Intergenic	107491	NR_104657	101928035	Hs.39557	NR_104657	ENSG00000261404	LOC101928035	-	uncharacterized LOC101928035	ncRNA
19-PTNLD28-TUMOR_peak_16089	chr10	125510970	125511144	+	13.94772	NA	intron (NM_198148, intron 13 of 13)	intron (NM_198148, intron 13 of 13)	85186	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
19-PTNLD28-TUMOR_peak_11955	chr10	8658332	8658534	+	13.94772	NA	Intergenic	Intergenic	-348165	NR_108058	100507143	Hs.258979	NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
19-PTNLD28-TUMOR_peak_33024	chr15	34836213	34836363	+	13.94772	NA	intron (NR_027410, intron 8 of 23)	intron (NR_027410, intron 8 of 23)	-8066	NM_001023567	440270	Hs.720151	NM_001023567	HPRD:18635	GOLGA8B	GOLGA5	golgin A8 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_77068	chr4	129829156	129829383	+	13.94772	NA	intron (NM_144643, intron 18 of 20)	intron (NM_144643, intron 18 of 20)	96270	NM_001287443	79960	Hs.12420	NM_024900	HPRD:10151	JADE1	PHF17	jade family PHD finger 1	protein-coding
19-PTNLD28-TUMOR_peak_89289	chr6	120930108	120930386	+	13.94772	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	725399	NR_104452	221322	Hs.121396	NM_152730	HPRD:12867	TBC1D32	BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	TBC1 domain family, member 32	protein-coding
19-PTNLD28-TUMOR_peak_94987	chr7	121185052	121185223	+	13.94772	NA	Intergenic	MER92C|LTR|ERV1	-148715	NM_001040020	10447	Hs.434053	NM_014888	HPRD:12270	FAM3C	ILEI	family with sequence similarity 3, member C	protein-coding
19-PTNLD28-TUMOR_peak_68719	chr3	63241720	63241839	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-22135	NM_001130003	132204	Hs.648668	NM_144642	HPRD:15458	SYNPR	SPO	synaptoporin	protein-coding
19-PTNLD28-TUMOR_peak_1305	chr1	21230058	21230252	+	13.94772	NA	intron (NM_001198802, intron 13 of 34)	intron (NM_001198802, intron 13 of 34)	-116974	NM_016287	50809	Hs.142442	NM_016287	HPRD:11026	HP1BP3	HP1-BP74	heterochromatin protein 1, binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_108931	chrX	95729416	95729603	+	13.94772	NA	Intergenic	Intergenic	-136608	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_11902	chr10	6962106	6962259	+	13.94772	NA	Intergenic	Intergenic	140622	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
19-PTNLD28-TUMOR_peak_89623	chr6	137630402	137630592	+	13.94772	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-89930	NM_000416	3459	Hs.520414	NM_000416	HPRD:00127	IFNGR1	CD119|IFNGR	interferon gamma receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_102131	chr9	6955305	6955528	+	13.94772	NA	intron (NM_001146696, intron 8 of 17)	intron (NM_001146696, intron 8 of 17)	197775	NM_015061	23081	Hs.709425	NM_015061	HPRD:12016	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
19-PTNLD28-TUMOR_peak_36661	chr16	19856663	19856869	+	13.94772	NA	intron (NM_153208, intron 9 of 9)	intron (NM_153208, intron 9 of 9)	39385	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_80870	chr5	78316986	78317099	+	13.94772	NA	non-coding (NR_104003, exon 10 of 10)	non-coding (NR_104003, exon 10 of 10)	-34685	NM_000046	411	Hs.149103	NM_000046	HPRD:08358	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
19-PTNLD28-TUMOR_peak_27348	chr13	20595701	20595853	+	13.94772	NA	intron (NM_197968, intron 7 of 24)	L1MEc|LINE|L1	62803	NM_001190965	7750	Hs.507433	NM_003453	HPRD:03745	ZMYM2	FIM|MYM|RAMP|SCLL|ZNF198	zinc finger, MYM-type 2	protein-coding
19-PTNLD28-TUMOR_peak_4379	chr1	75699144	75699247	+	13.94772	NA	intron (NM_001130058, intron 12 of 23)	intron (NM_001130058, intron 12 of 23)	98628	NM_001256114	431707	Hs.403934	NM_001001933	HPRD:17275	LHX8	LHX7	LIM homeobox 8	protein-coding
19-PTNLD28-TUMOR_peak_28635	chr13	86346677	86346835	+	13.94772	NA	Intergenic	MER44B|DNA|TcMar-Tigger	26727	NM_032229	84189	Hs.525105	NM_032229	HPRD:15403	SLITRK6	DFNMYP	SLIT and NTRK-like family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_108870	chrX	85302251	85302651	+	13.94772	NA	intron (NM_000390, intron 1 of 14)	intron (NM_000390, intron 1 of 14)	115	NM_000390	1121	Hs.496449	NM_000390	HPRD:02312	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	choroideremia (Rab escort protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_13946	chr10	68887321	68887509	+	13.94772	NA	intron (NM_013266, intron 7 of 17)	intron (NM_013266, intron 7 of 17)	115391	NR_111909	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_81171	chr5	93013158	93013294	+	13.94772	NA	intron (NM_032042, intron 10 of 10)	intron (NM_032042, intron 10 of 10)	-56732	NR_031754	100313887		NR_031754	miRBase:MI0011284	MIR2277	-	microRNA 2277	ncRNA
19-PTNLD28-TUMOR_peak_36520	chr16	15973473	15973631	+	13.94772	NA	intron (NM_144600, intron 3 of 4)	L2a|LINE|L2	8895	NM_144600	123811	Hs.514179	NM_144600	HPRD:08096	FOPNL	C16orf63|FOR20|PHSECRG2	FGFR1OP N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_108077	chrX	44112122	44112330	+	13.94772	NA	intron (NM_025184, intron 4 of 14)	L1PA7|LINE|L1	90697	NM_025184	80258	Hs.521953	NM_025184		EFHC2	MRX74|dJ1158H2.1	EF-hand domain (C-terminal) containing 2	protein-coding
19-PTNLD28-TUMOR_peak_106891	chr9	140881870	140882020	+	13.94772	NA	intron (NM_000718, intron 15 of 45)	intron (NM_000718, intron 15 of 45)	57578	NR_121582	101928786	Hs.678847	NR_121582		LOC101928786	-	uncharacterized LOC101928786	ncRNA
19-PTNLD28-TUMOR_peak_55505	chr2	124905467	124905847	+	13.94772	NA	intron (NM_130773, intron 1 of 23)	intron (NM_130773, intron 1 of 23)	122793	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_33412	chr15	45214978	45215112	+	13.94772	NA	Intergenic	Intergenic	-33855	NM_152448	145645	Hs.567701	NM_152448	HPRD:17528	C15orf43	-	chromosome 15 open reading frame 43	protein-coding
19-PTNLD28-TUMOR_peak_98348	chr8	40110733	40110902	+	13.94772	NA	Intergenic	Intergenic	99830	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_85702	chr6	17447073	17447222	+	13.94772	NA	intron (NM_006366, intron 3 of 12)	intron (NM_006366, intron 3 of 12)	53411	NM_006366	10486	Hs.132902	NM_006366	HPRD:10808	CAP2	-	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_17664	chr11	22897541	22897683	+	13.94772	NA	Intergenic	Intergenic	-15640	NM_001195637	100500938	Hs.555029	NM_001195637	ENSG00000255359	CCDC179	-	coiled-coil domain containing 179	protein-coding
19-PTNLD28-TUMOR_peak_46231	chr18	68904470	68904660	+	13.94772	NA	Intergenic	THE1C|LTR|ERVL-MaLR	341627	NR_038325	100505776	Hs.202072	NR_038325	ENSG00000260676	LOC100505776	-	uncharacterized LOC100505776	ncRNA
19-PTNLD28-TUMOR_peak_30369	chr14	54391610	54391787	+	13.94772	NA	Intergenic	Intergenic	23504	NR_049843	100847076		NR_049843	miRBase:MI0019135	MIR5580	-	microRNA 5580	ncRNA
19-PTNLD28-TUMOR_peak_82884	chr5	142642019	142642167	+	13.94772	NA	Intergenic	MER44C|DNA|TcMar-Tigger	141161	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_33362	chr15	44244681	44244802	+	13.94772	NA	intron (NR_104455, intron 1 of 14)	intron (NR_104455, intron 1 of 14)	-74372	NR_003571	728758	Hs.658099	NR_003571		PIN4P1	-	protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_84801	chr6	2611457	2611608	+	13.94772	NA	Intergenic	Intergenic	23766	NM_152554	154386	Hs.680574	NM_152554		C6orf195	bA145H9.2	chromosome 6 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_89030	chr6	109193305	109193459	+	13.94772	NA	intron (NM_032131, intron 4 of 17)	intron (NM_032131, intron 4 of 17)	23763	NM_032131	84071	Hs.645481	NM_032131	HPRD:09809	ARMC2	bA787I22.1	armadillo repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_50914	chr2	8459390	8459588	+	13.94772	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	9060	NR_034135	339789	Hs.565619	NM_207358	HPRD:14171	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
19-PTNLD28-TUMOR_peak_30903	chr14	68303892	68304010	+	13.94772	NA	intron (NM_133510, intron 4 of 10)	intron (NM_133510, intron 4 of 10)	17455	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_74918	chr4	36345525	36345696	+	13.94772	NA	3' UTR (NM_001170700, exon 9 of 9)	3' UTR (NM_001170700, exon 9 of 9)	59966	NM_001170700	401124	Hs.363407	NM_001136536		DTHD1	-	death domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97420	chr8	19394709	19394861	+	13.94772	NA	intron (NR_024040, intron 2 of 9)	MER72B|LTR|ERV1	65271	NM_001130518	55790	Hs.613729	NM_018371	HPRD:13114	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_28279	chr13	52075872	52076103	+	13.94772	NA	Intergenic	Intergenic	48506	NR_103812	100507398	Hs.594897	NR_103812	ENSG00000236778	INTS6-AS1	-	INTS6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108538	chrX	63124098	63124262	+	13.94772	NA	Intergenic	L1P1|LINE|L1	-118213	NR_031567	100302115		NR_031567	miRBase:MI0003782	MIR1468	MIRN1468|hsa-mir-1468	microRNA 1468	ncRNA
19-PTNLD28-TUMOR_peak_44741	chr18	14529973	14530112	+	13.94772	NA	intron (NM_001137671, intron 6 of 10)	MER1A|DNA|hAT-Charlie	13557	NM_001137671	388468	Hs.454726	NM_001137671		POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family, member C	protein-coding
19-PTNLD28-TUMOR_peak_35265	chr15	92237836	92238043	+	13.94772	NA	Intergenic	Intergenic	-158999	NM_001145044	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_55000	chr2	112931748	112931915	+	13.94772	NA	intron (NM_153214, intron 3 of 7)	intron (NM_153214, intron 3 of 7)	35869	NM_153214	129804	Hs.437696	NM_153214	HPRD:08783	FBLN7	TM14	fibulin 7	protein-coding
19-PTNLD28-TUMOR_peak_18376	chr11	46019214	46019344	+	13.94772	NA	intron (NM_001101802, intron 5 of 17)	intron (NM_001101802, intron 5 of 17)	75052	NM_001300721	120071	Hs.86543	NM_152312	HPRD:13618	GYLTL1B	LARGE2	glycosyltransferase-like 1B	protein-coding
19-PTNLD28-TUMOR_peak_103995	chr9	80048679	80048851	+	13.94772	NA	intron (NM_004297, intron 3 of 6)	intron (NM_004297, intron 3 of 6)	-13800	NR_121184	101927422	Hs.434324	NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28724	chr13	96104669	96104858	+	13.94772	NA	intron (NM_182848, intron 1 of 4)	intron (NM_182848, intron 1 of 4)	18910	NM_001160100	9071	Hs.534377	NM_006984	HPRD:13063	CLDN10	CPETRL3|OSP-L	claudin 10	protein-coding
19-PTNLD28-TUMOR_peak_22400	chr12	966891	967028	+	13.94772	NA	intron (NM_001184985, intron 5 of 27)	intron (NM_001184985, intron 5 of 27)	75283	NM_001297420	5893	Hs.410355	NM_134422	HPRD:11855	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_69513	chr3	104132090	104132315	+	13.94772	NA	Intergenic	Intergenic	-186097	NR_030330	693127		NR_030330	miRBase:MI0003612	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
19-PTNLD28-TUMOR_peak_23399	chr12	23913642	23913772	+	13.94772	NA	intron (NM_006940, intron 3 of 14)	intron (NM_006940, intron 3 of 14)	-176161	NM_178010	6660	Hs.657542	NM_006940	HPRD:18086	SOX5	L-SOX5|L-SOX5B|L-SOX5F	SRY (sex determining region Y)-box 5	protein-coding
19-PTNLD28-TUMOR_peak_69247	chr3	86836285	86836429	+	13.94772	NA	Intergenic	L2a|LINE|L2	203900	NM_016206	389136	Hs.606507	NM_016206	HPRD:13431	VGLL3	VGL-3|VGL3	vestigial-like family member 3	protein-coding
19-PTNLD28-TUMOR_peak_80118	chr5	59088933	59089139	+	13.94772	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-24598	NM_001197218	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_27828	chr13	36123697	36123882	+	13.94772	NA	intron (NM_001204197, intron 1 of 17)	MLT1J|LTR|ERVL-MaLR	72903	NM_001204197	26960	Hs.491172	NM_015678	HPRD:05352	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
19-PTNLD28-TUMOR_peak_1682	chr1	26743647	26743759	+	13.94772	NA	intron (NM_024674, intron 2 of 3)	intron (NM_024674, intron 2 of 3)	6434	NM_024674	79727	Hs.86154	NM_024674	HPRD:17278	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_24509	chr12	54219230	54219366	+	13.94772	NA	Intergenic	Intergenic	-68480	NR_104332	102216268	Hs.742074	NR_104332		CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
19-PTNLD28-TUMOR_peak_18177	chr11	42035473	42035615	+	13.94772	NA	Intergenic	Intergenic	239696	NR_038309	100507205	Hs.99310	NR_038309		LOC100507205	-	uncharacterized LOC100507205	ncRNA
19-PTNLD28-TUMOR_peak_81458	chr5	107338916	107339079	+	13.94772	NA	intron (NM_001163315, intron 7 of 8)	L1MEd|LINE|L1	-332401	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_15931	chr10	120932268	120932401	+	13.94772	NA	intron (NM_006793, intron 4 of 6)	AluJo|SINE|Alu	6043	NM_014098	10935	Hs.523302	NM_006793	HPRD:05305	PRDX3	AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III	peroxiredoxin 3	protein-coding
19-PTNLD28-TUMOR_peak_22014	chr11	127864656	127864838	+	13.94772	NA	Intergenic	Intergenic	527458	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_108845	chrX	81096750	81096853	+	13.94772	NA	Intergenic	L1HS|LINE|L1	-639360	NM_030763	79366	Hs.282204	NM_030763	HPRD:02310	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_26491	chr12	117066049	117066222	+	13.94772	NA	Intergenic	AluJr|SINE|Alu	68949	NM_001085481	643246	Hs.506947	NM_001085481	ENSG00000171471	MAP1LC3B2	ATG8G	microtubule-associated protein 1 light chain 3 beta 2	protein-coding
19-PTNLD28-TUMOR_peak_3895	chr1	60622635	60622818	+	13.94772	NA	Intergenic	Intergenic	-83284	NM_152377	127795	Hs.47385	NM_152377	HPRD:11338	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_77902	chr4	164306770	164306883	+	13.94772	NA	Intergenic	MER41B|LTR|ERV1	41735	NM_006174	4889	Hs.519058	NM_006174	HPRD:03591	NPY5R	NPY5-R|NPYR5|NPYY5-R	neuropeptide Y receptor Y5	protein-coding
19-PTNLD28-TUMOR_peak_100869	chr8	129239574	129239702	+	13.94772	NA	Intergenic	Intergenic	77276	NR_031613	100302281		NR_031613	miRBase:MI0006341	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
19-PTNLD28-TUMOR_peak_75602	chr4	71387604	71387763	+	13.94772	NA	intron (NM_001286731, intron 2 of 8)	intron (NM_001286731, intron 2 of 8)	3394	NM_001286731	401138	Hs.453069	NM_212557	HPRD:18270	AMTN	UNQ689	amelotin	protein-coding
19-PTNLD28-TUMOR_peak_49131	chr19	41480599	41480712	+	13.94772	NA	Intergenic	Intergenic	-16549	NM_000767	1555	Hs.1360	NM_000767	HPRD:00477	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450, family 2, subfamily B, polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_71769	chr3	151765376	151765553	+	13.94772	NA	Intergenic	Intergenic	-119501	NR_110202	101928142	Hs.680207	NR_110202	ENSG00000242908	AADACL2-AS1	-	AADACL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23306	chr12	19171649	19171832	+	13.94772	NA	Intergenic	MER92B|LTR|ERV1	-110886	NM_019012	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_45241	chr18	34000253	34000467	+	13.94772	NA	intron (NM_001281739, intron 3 of 23)	intron (NM_001281739, intron 3 of 23)	122701	NM_001281739	80206	Hs.630884	NM_025135	HPRD:16894	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_83714	chr5	167541517	167541672	+	13.94772	NA	intron (NM_001122679, intron 9 of 28)	intron (NM_001122679, intron 9 of 28)	117783	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_90620	chr6	169357087	169357321	+	13.94772	NA	Intergenic	Intergenic	297005	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_99001	chr8	66033301	66033441	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	59204	NR_038901	552859	Hs.156997	NR_038901		LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA
19-PTNLD28-TUMOR_peak_107964	chrX	39564583	39564808	+	13.94772	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-313667	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
19-PTNLD28-TUMOR_peak_85427	chr6	12546143	12546372	+	13.94772	NA	Intergenic	Intergenic	-153671	NR_103808	100887744		NR_103808		RNU6-48P	RNU6-48	RNA, U6 small nuclear 48, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_94647	chr7	104687004	104687127	+	13.94772	NA	intron (NM_182931, intron 3 of 26)	L1ME4a|LINE|L1	32428	NM_018682	55904	Hs.592262	NM_018682	HPRD:10528	KMT2E	HDCMC04P|MLL5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding
19-PTNLD28-TUMOR_peak_31075	chr14	70207839	70207976	+	13.94772	NA	Intergenic	MER4-int|LTR|ERV1	-25922	NM_001039465	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine/arginine-rich splicing factor 5	protein-coding
19-PTNLD28-TUMOR_peak_36107	chr16	8030963	8031104	+	13.94772	NA	Intergenic	L2c|LINE|L2	556795	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_79939	chr5	55232057	55232221	+	13.94772	NA	non-coding (NR_120480, exon 18 of 18)	non-coding (NR_120480, exon 18 of 18)	58682	NM_175767	3572	Hs.532082	NM_002184	HPRD:02824	IL6ST	CD130|CDW130|GP130|IL-6RB	interleukin 6 signal transducer	protein-coding
19-PTNLD28-TUMOR_peak_93643	chr7	80263935	80264049	+	13.94772	NA	intron (NM_001289911, intron 1 of 11)	intron (NM_001289911, intron 1 of 11)	-3840	NM_001001548	948	Hs.120949	NM_000072	HPRD:01430	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_89866	chr6	148121625	148121745	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	291857	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_15329	chr10	104061833	104061969	+	13.94772	NA	intron (NM_001199379, intron 3 of 39)	SVA_C|Other|Other	56646	NM_001199379	8729	Hs.290243	NM_004193	HPRD:04740	GBF1	ARF1GEF	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_97754	chr8	26077141	26077309	+	13.94772	NA	Intergenic	Intergenic	-71782	NM_002717	5520	Hs.146339	NM_002717	HPRD:09223	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
19-PTNLD28-TUMOR_peak_57216	chr2	179261884	179261996	+	13.94772	NA	3' UTR (NM_001201481, exon 24 of 24)	3' UTR (NM_001201481, exon 24 of 24)	15135	NR_031666	100302152		NR_031666		MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
19-PTNLD28-TUMOR_peak_102523	chr9	25513619	25513907	+	13.94772	NA	Intergenic	Intergenic	165093	NM_001004125	286319	Hs.26268	NM_001004125	HPRD:18247	TUSC1	TSG-9|TSG9	tumor suppressor candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_72135	chr3	162129124	162129229	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	891913	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_45158	chr18	30555123	30555308	+	13.94772	NA	intron (NM_001105528, intron 20 of 21)	intron (NM_001105528, intron 20 of 21)	-202241	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_103787	chr9	74121859	74122011	+	13.94772	NA	Intergenic	Intergenic	261865	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_108122	chrX	46176713	46176874	+	13.94772	NA	Intergenic	Intergenic	10316	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_91334	chr7	14942658	14942801	+	13.94772	NA	Intergenic	Intergenic	-61654	NM_004080	1607	Hs.567255	NM_004080	HPRD:06819	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase, beta 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_30729	chr14	64243854	64243970	+	13.94772	NA	Intergenic	Intergenic	-49156	NM_030791	81537	Hs.24678	NM_030791	HPRD:10226	SGPP1	SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_110302	chrY	18473662	18473795	+	13.94772	NA	Intergenic	L1PA4|LINE|L1	-1139110	NR_028083	340618	Hs.434364	NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41, member A, Y-linked 1	ncRNA
19-PTNLD28-TUMOR_peak_80910	chr5	79365938	79366121	+	13.94772	NA	intron (NR_109930, intron 6 of 7)	intron (NR_109930, intron 6 of 7)	13459	NR_109930	101929215		NR_109930	ENSG00000249825	CTD-2201I18.1	-	uncharacterized LOC101929215	ncRNA
19-PTNLD28-TUMOR_peak_81602	chr5	112602717	112602883	+	13.94772	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	27812	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_52481	chr2	44771507	44771743	+	13.94772	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	5034	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_30603	chr14	59974196	59974304	+	13.94772	NA	intron (NM_001164399, intron 19 of 19)	intron (NM_001164399, intron 19 of 19)	23089	NM_001098625	51528	Hs.446850	NM_016475		JKAMP	C14orf100|HSPC213|HSPC327|JAMP	JNK1/MAPK8-associated membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_21406	chr11	116943354	116943520	+	13.94772	NA	intron (NM_025164, intron 1 of 23)	intron (NM_025164, intron 1 of 23)	25694	NM_025164	23387	Hs.167451	NM_025164	HPRD:11121	SIK3	QSK|SIK-3	SIK family kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_23445	chr12	25982274	25982532	+	13.94772	NA	Intergenic	Intergenic	44609	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	ncRNA
19-PTNLD28-TUMOR_peak_56425	chr2	156877948	156878149	+	13.94772	NA	non-coding (NR_110249, exon 4 of 4)	non-coding (NR_110249, exon 4 of 4)	233395	NR_110249	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_77617	chr4	152959469	152959680	+	13.94772	NA	Intergenic	Intergenic	-62331	NR_121628	100996286	Hs.322462	NR_121627	ENSG00000245954	LOC100996286	-	uncharacterized LOC100996286	ncRNA
19-PTNLD28-TUMOR_peak_46358	chr18	75133364	75133490	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	171419	NM_001480	2587	Hs.272191	NM_001480		GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_69418	chr3	99466974	99467138	+	13.94772	NA	intron (NM_020351, intron 2 of 3)	MIRc|SINE|MIR	-69622	NM_032359	84319	Hs.581320	NM_032359	HPRD:11351	CMSS1	C3orf26	cms1 ribosomal small subunit homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_100216	chr8	117740904	117741024	+	13.94772	NA	intron (NM_003756, intron 1 of 7)	intron (NM_003756, intron 1 of 7)	27098	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_27569	chr13	27863207	27863357	+	13.94772	NA	Intergenic	LTR45B|LTR|ERV1	18818	NM_206827	387496	Hs.192131	NM_206827	HPRD:17956	RASL11A	-	RAS-like, family 11, member A	protein-coding
19-PTNLD28-TUMOR_peak_68538	chr3	57332159	57332315	+	13.94772	NA	intron (NM_001291661, intron 54 of 57)	MLT1K|LTR|ERVL-MaLR	-5527	NM_001142733	142686	Hs.665154	NM_130387	HPRD:10668	ASB14	-	ankyrin repeat and SOCS box containing 14	protein-coding
19-PTNLD28-TUMOR_peak_11073	chr1	235416574	235416726	+	13.94772	NA	intron (NM_001206794, intron 5 of 23)	MER20|DNA|hAT-Charlie	-63219	NR_039908	100616224		NR_039908		MIR4753	-	microRNA 4753	ncRNA
19-PTNLD28-TUMOR_peak_100181	chr8	116961772	116961910	+	13.94772	NA	TTS (NR_046215)	TTS (NR_046215)	-280586	NM_014112	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_31815	chr14	94437421	94437589	+	13.94772	NA	intron (NM_001202429, intron 1 of 9)	intron (NM_001202429, intron 1 of 9)	5571	NM_001202429	51676	Hs.510327	NM_016150	HPRD:05768	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28914	chr13	104038814	104038931	+	13.94772	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-104024	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_57609	chr2	196977200	196977397	+	13.94772	NA	Intergenic	Intergenic	-43762	NM_018897	56171	Hs.97403	NM_018897	HPRD:10914	DNAH7	-	dynein, axonemal, heavy chain 7	protein-coding
19-PTNLD28-TUMOR_peak_94770	chr7	107103714	107103857	+	13.94772	NA	intron (NM_181733, intron 6 of 20)	intron (NM_181733, intron 6 of 20)	-6717	NM_005295	2845	Hs.657277	NM_005295	HPRD:03552	GPR22	-	G protein-coupled receptor 22	protein-coding
19-PTNLD28-TUMOR_peak_69875	chr3	113177109	113177213	+	13.94772	NA	intron (NM_144718, intron 12 of 17)	SVA_B|Other|Other	-16800	NM_018338	55779	Hs.584936	NM_018338	HPRD:07734	CFAP44	WDR52	cilia and flagella associated protein 44	protein-coding
19-PTNLD28-TUMOR_peak_91464	chr7	19929167	19929265	+	13.94772	NA	Intergenic	L1PA4|LINE|L1	-116812	NM_152774	256130	Hs.487670	NM_152774	HPRD:14617	TMEM196	-	transmembrane protein 196	protein-coding
19-PTNLD28-TUMOR_peak_32986	chr15	33752469	33752626	+	13.94772	NA	intron (NM_001243996, intron 1 of 102)	intron (NM_001243996, intron 1 of 102)	149370	NM_001243996	6263	Hs.709373	NM_001036	HPRD:01620	RYR3	RYR-3	ryanodine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_60894	chr20	36255500	36255634	+	13.94772	NA	Intergenic	Intergenic	-4046	NR_047461	100861522	Hs.580680	NR_047461	ENSG00000225759	LINC00489	-	long intergenic non-protein coding RNA 489	ncRNA
19-PTNLD28-TUMOR_peak_14986	chr10	95924947	95925100	+	13.94772	NA	intron (NM_001288989, intron 3 of 32)	L1PA4|LINE|L1	-56472	NR_120616	101927049	Hs.144492	NR_120615		PLCE1-AS2	-	PLCE1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_51204	chr2	12667690	12667804	+	13.94772	NA	intron (NR_110196, intron 4 of 5)	L1PA2|LINE|L1	-189251	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_43254	chr17	71251829	71252011	+	13.94772	NA	intron (NM_001129885, intron 3 of 5)	intron (NM_001129885, intron 3 of 5)	6099	NM_001129885	642843	Hs.534707	NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4-like	protein-coding
19-PTNLD28-TUMOR_peak_103884	chr9	76484283	76484489	+	13.94772	NA	intron (NR_106746, intron 7 of 7)	intron (NR_106746, intron 7 of 7)	-502061	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
19-PTNLD28-TUMOR_peak_11692	chr10	3259640	3259814	+	13.94772	NA	Intergenic	MER30B|DNA|hAT-Charlie	-44694	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_65	chr1	786908	787098	+	13.94772	NA	intron (NR_047519, intron 3 of 5)	intron (NR_047519, intron 3 of 5)	23825	NR_047525	643837	Hs.133183	NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
19-PTNLD28-TUMOR_peak_51657	chr2	26507102	26507264	+	13.94772	NA	intron (NM_001281512, intron 12 of 14)	intron (NM_001281512, intron 12 of 14)	34734	NM_001145168	165082	Hs.631878	NM_153835	HPRD:11009	GPR113	PGR23|hGPCR37	G protein-coupled receptor 113	protein-coding
19-PTNLD28-TUMOR_peak_40150	chr17	9211472	9211686	+	13.94772	NA	intron (NM_004853, intron 7 of 7)	MER39|LTR|ERV1	-129144	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_77545	chr4	150807155	150807329	+	13.94772	NA	Intergenic	Intergenic	-192184	NM_001040260	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_97395	chr8	18998938	18999157	+	13.94772	NA	Intergenic	Intergenic	103985	NR_038919	100128993	Hs.697742	NR_038919		LOC100128993	-	uncharacterized LOC100128993	ncRNA
19-PTNLD28-TUMOR_peak_4544	chr1	83729723	83729908	+	13.94772	NA	Intergenic	L1PA3|LINE|L1	-277924	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_64220	chr22	17861551	17861736	+	13.94772	NA	intron (NM_001290046, intron 1 of 18)	intron (NM_001290046, intron 1 of 18)	20804	NM_001290046	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	cat eye syndrome chromosome region, candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_52776	chr2	53631293	53631455	+	13.94772	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-363555	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_5689	chr1	115060071	115060255	+	13.94772	NA	Intergenic	MER77|LTR|ERVL	-6382	NM_033020	51592	Hs.26837	NM_015906	HPRD:10423	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
19-PTNLD28-TUMOR_peak_91266	chr7	8482501	8482665	+	13.94772	NA	intron (NM_152745, intron 2 of 2)	CpG	8998	NM_152745	30010	Hs.487564	NM_152745	HPRD:06867	NXPH1	NPH1	neurexophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_87040	chr6	35678120	35678253	+	13.94772	NA	intron (NM_001145775, intron 2 of 11)	AluJb|SINE|Alu	18174	NM_001145775	2289	Hs.407190	NM_004117	HPRD:04019	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_16047	chr10	124083936	124084127	+	13.94772	NA	intron (NM_144587, intron 10 of 15)	intron (NM_144587, intron 10 of 15)	-50063	NM_001001974	59338	Hs.643512	NM_021622	HPRD:09686	PLEKHA1	TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding
19-PTNLD28-TUMOR_peak_46957	chr19	7317121	7317279	+	13.94772	NA	Intergenic	Intergenic	-23189	NM_000208	3643	Hs.465744	NM_000208	HPRD:00975	INSR	CD220|HHF5	insulin receptor	protein-coding
19-PTNLD28-TUMOR_peak_88052	chr6	53744543	53744670	+	13.94772	NA	intron (NM_018214, intron 3 of 13)	intron (NM_018214, intron 3 of 13)	84828	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_79873	chr5	53854349	53854493	+	13.94772	NA	Intergenic	Intergenic	40828	NM_001102575	112574	Hs.432755	NM_052870	HPRD:15407	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
19-PTNLD28-TUMOR_peak_41406	chr17	39010645	39010762	+	13.94772	NA	Intergenic	Intergenic	12759	NM_000223	3859	Hs.66739	NM_000223	HPRD:03405	KRT12	K12	keratin 12	protein-coding
19-PTNLD28-TUMOR_peak_64907	chr22	27714617	27714744	+	13.94772	NA	Intergenic	Intergenic	415425	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_57613	chr2	197090031	197090202	+	13.94772	NA	intron (NM_020760, intron 23 of 28)	intron (NM_020760, intron 23 of 28)	-34632	NR_110225	101927482	Hs.191841	NR_110225	ENSG00000229056	LOC101927482	-	uncharacterized LOC101927482	ncRNA
19-PTNLD28-TUMOR_peak_28649	chr13	90166871	90167179	+	13.94772	NA	Intergenic	L2b|LINE|L2	49642	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	ncRNA
19-PTNLD28-TUMOR_peak_27845	chr13	36956303	36956496	+	13.94772	NA	Intergenic	Intergenic	-12082	NM_001142294	23111	Hs.440414	NM_015087	HPRD:06170	SPG20	SPARTIN|TAHCCP1	spastic paraplegia 20 (Troyer syndrome)	protein-coding
19-PTNLD28-TUMOR_peak_97364	chr8	18054931	18055089	+	13.94772	NA	intron (NM_001291962, intron 2 of 5)	MER20|DNA|hAT-Charlie	-12602	NM_000662	9	Hs.591847	NM_000662	HPRD:00149	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_23406	chr12	24640926	24641285	+	13.94772	NA	intron (NM_152989, intron 1 of 17)	intron (NM_152989, intron 1 of 17)	74278	NM_152989	6660	Hs.657542	NM_006940	HPRD:18086	SOX5	L-SOX5|L-SOX5B|L-SOX5F	SRY (sex determining region Y)-box 5	protein-coding
19-PTNLD28-TUMOR_peak_7822	chr1	164290649	164290818	+	13.94772	NA	Intergenic	CpG	-237864	NM_001204963	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_77784	chr4	157457932	157458059	+	13.94772	NA	Intergenic	Intergenic	434551	NM_016205	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_73631	chr3	197016718	197016843	+	13.94772	NA	intron (NM_001098424, intron 3 of 25)	intron (NM_001098424, intron 3 of 25)	4039	NR_039960	100616216		NR_039960		MIR4797	-	microRNA 4797	ncRNA
19-PTNLD28-TUMOR_peak_107539	chrX	11052183	11052301	+	13.94772	NA	Intergenic	LTR14C|LTR|ERVK	-77164	NM_001122608	3052	Hs.211571	NM_005333	HPRD:02085	HCCS	CCHL|MCOPS7|MLS	holocytochrome c synthase	protein-coding
19-PTNLD28-TUMOR_peak_76559	chr4	109968062	109968304	+	13.94772	NA	intron (NM_198721, intron 4 of 36)	intron (NM_198721, intron 4 of 36)	255340	NM_001256074	84570	Hs.658842	NM_032518	HPRD:09886	COL25A1	AMY|CLAC|CLAC-P|CLACP	collagen, type XXV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_5684	chr1	114896027	114896200	+	13.94772	NA	Intergenic	Intergenic	157668	NM_015906	51592	Hs.26837	NM_015906	HPRD:10423	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
19-PTNLD28-TUMOR_peak_82633	chr5	139877587	139877759	+	13.94772	NA	intron (NM_020690, intron 15 of 35)	intron (NM_020690, intron 15 of 35)	-49578	NM_003732	8637	Hs.594084	NM_003732	HPRD:09149	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_51127	chr2	11141980	11142200	+	13.94772	NA	Intergenic	L1HS|LINE|L1	90027	NM_002236	3754	Hs.23735	NM_002236	HPRD:04808	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
19-PTNLD28-TUMOR_peak_91329	chr7	14319031	14319133	+	13.94772	NA	intron (NM_004080, intron 22 of 24)	L1PA3|LINE|L1	-288032	NM_001163148	2115	Hs.22634	NM_004956	HPRD:02765	ETV1	ER81	ets variant 1	protein-coding
19-PTNLD28-TUMOR_peak_53517	chr2	74090186	74090402	+	13.94772	NA	3' UTR (NM_006463, exon 11 of 11)	3' UTR (NM_006463, exon 11 of 11)	-29799	NM_001615	72	Hs.516105	NM_001615	HPRD:00016	ACTG2	ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM	actin, gamma 2, smooth muscle, enteric	protein-coding
19-PTNLD28-TUMOR_peak_76443	chr4	103701694	103701891	+	13.94772	NA	Intergenic	ERVL-E-int|LTR|ERVL	-19641	NM_005908	4126	Hs.480415	NM_005908	HPRD:02008	MANBA	MANB1	mannosidase, beta A, lysosomal	protein-coding
19-PTNLD28-TUMOR_peak_23871	chr12	43699970	43700177	+	13.94772	NA	Intergenic	Intergenic	245651	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_45803	chr18	51602174	51602356	+	13.94772	NA	Intergenic	L2a|LINE|L2	146517	NR_002970	677819	Hs.655869	NR_002970		SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
19-PTNLD28-TUMOR_peak_38634	chr16	71892754	71892959	+	13.94772	NA	TTS (NM_001201553)	TTS (NM_001201553)	12962	NM_001137675	342371	Hs.743239	NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1-like	protein-coding
19-PTNLD28-TUMOR_peak_94599	chr7	103270902	103271010	+	13.94772	NA	intron (NM_005045, intron 19 of 64)	intron (NM_005045, intron 19 of 64)	-184332	NM_206885	375611	Hs.585146	NM_198999	HPRD:09224	SLC26A5	DFNB61|PRES	solute carrier family 26 (anion exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_25986	chr12	105947999	105948217	+	13.94772	NA	Intergenic	Intergenic	-149873	NR_110108	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_26453	chr12	116355074	116355342	+	13.94772	NA	Intergenic	Intergenic	231251	NR_030351	693205		NR_030351		MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
19-PTNLD28-TUMOR_peak_25475	chr12	83044474	83044676	+	13.94772	NA	Intergenic	Intergenic	-36359	NM_152588	160335	Hs.577775	NM_152588	HPRD:13230	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46047	chr18	59182513	59182662	+	13.94772	NA	intron (NM_031891, intron 5 of 10)	L1HS|LINE|L1	24812	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_83078	chr5	148390656	148390902	+	13.94772	NA	intron (NM_024577, intron 13 of 16)	intron (NM_024577, intron 13 of 16)	51958	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_31017	chr14	69574193	69574351	+	13.94772	NA	intron (NM_001284206, intron 5 of 8)	intron (NM_001284206, intron 5 of 8)	45044	NM_001284207	8816	Hs.509780	NM_003861	HPRD:16032	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
19-PTNLD28-TUMOR_peak_12788	chr10	31642632	31642801	+	13.94772	NA	intron (NM_001128128, intron 1 of 8)	MamSINE1|SINE|tRNA	32652	NM_001174094	6935	Hs.124503	NM_030751	HPRD:01798	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_12696	chr10	30198005	30198156	+	13.94772	NA	Intergenic	Intergenic	150408	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_55185	chr2	117254026	117254190	+	13.94772	NA	Intergenic	MER68|LTR|ERVL	-1318147	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_49038	chr19	40451594	40451692	+	13.94772	NA	Intergenic	AluY|SINE|Alu	-11110	NM_003890	8857	Hs.111732	NM_003890	HPRD:10956	FCGBP	FC(GAMMA)BP	Fc fragment of IgG binding protein	protein-coding
19-PTNLD28-TUMOR_peak_58866	chr2	233019721	233019874	+	13.94772	NA	intron (NM_001257281, intron 8 of 13)	L1HS|LINE|L1	193504	NR_046476	129563	Hs.732236	NM_152383	HPRD:14619	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_69201	chr3	80146942	80147220	+	13.94772	NA	Intergenic	Intergenic	-330022	NM_002941	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_20977	chr11	107243954	107244070	+	13.94772	NA	intron (NM_152434, intron 12 of 17)	L1PA3|LINE|L1	84560	NM_152434	143884	Hs.212140	NM_152434	HPRD:13102	CWF19L2	-	CWF19-like 2, cell cycle control (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_109508	chrX	132774254	132774384	+	13.94772	NA	intron (NM_001164618, intron 6 of 7)	intron (NM_001164618, intron 6 of 7)	-225114	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
19-PTNLD28-TUMOR_peak_56114	chr2	143637975	143638149	+	13.94772	NA	intron (NM_001032998, intron 1 of 11)	intron (NM_001032998, intron 1 of 11)	2867	NM_001199241	8942	Hs.470126	NM_003937	HPRD:08940	KYNU	-	kynureninase	protein-coding
19-PTNLD28-TUMOR_peak_100480	chr8	123786230	123786379	+	13.94772	NA	Intergenic	Intergenic	-7597	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_88584	chr6	85354783	85354935	+	13.94772	NA	Intergenic	Intergenic	119095	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_54655	chr2	105862133	105862294	+	13.94772	NA	Intergenic	Intergenic	4013	NM_007227	11250	Hs.590903	NM_007227	HPRD:05325	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
19-PTNLD28-TUMOR_peak_9921	chr1	211307421	211307687	+	13.94772	NA	promoter-TSS (NM_002238)	promoter-TSS (NM_002238)	-97	NM_172362	3756	Hs.553187	NM_002238		KCNH1	EAG|EAG1|Kv10.1|h-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding
19-PTNLD28-TUMOR_peak_64887	chr22	27159718	27159872	+	13.94772	NA	intron (NR_110543, intron 2 of 5)	intron (NR_110543, intron 2 of 5)	90989	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_81627	chr5	113346183	113346352	+	13.94772	NA	Intergenic	Intergenic	-351749	NM_021614	3781	Hs.98280	NM_021614	HPRD:09323	KCNN2	KCa2.2|SK2|SKCA2|SKCa 2|hSK2	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
19-PTNLD28-TUMOR_peak_53692	chr2	81893686	81893834	+	13.94772	NA	Intergenic	Intergenic	-199690	NR_110161	100507201	Hs.98589	NR_110161		LOC100507201	-	uncharacterized LOC100507201	ncRNA
19-PTNLD28-TUMOR_peak_12716	chr10	30441053	30441318	+	13.94772	NA	Intergenic	L1PB1|LINE|L1	-59596	NR_120653	101929279	Hs.559153	NR_120653		LOC101929279	-	uncharacterized LOC101929279	ncRNA
19-PTNLD28-TUMOR_peak_92499	chr7	49214078	49214281	+	13.94772	NA	Intergenic	Intergenic	250022	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_105317	chr9	112163880	112164035	+	13.94772	NA	intron (NR_026918, intron 6 of 12)	intron (NR_026918, intron 6 of 12)	16106	NR_026918	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_43049	chr17	65335542	65335700	+	13.94772	NA	TTS (NM_002816)	TTS (NM_002816)	27100	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding
19-PTNLD28-TUMOR_peak_94615	chr7	103871981	103872114	+	13.94772	NA	Intergenic	Intergenic	-23552	NM_002553	5001	Hs.432948	NM_002553	HPRD:09086	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex, subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_15567	chr10	111672718	111672916	+	13.94772	NA	intron (NR_030724, intron 1 of 18)	intron (NR_030724, intron 1 of 18)	10494	NM_001167604	7511	Hs.390623	NM_020383	HPRD:03899	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_29425	chr14	22782761	22782902	+	13.94772	NA	Intergenic	Intergenic	275312	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_8183	chr1	171870485	171870598	+	13.94772	NA	intron (NM_001136127, intron 1 of 19)	Tigger15a|DNA|TcMar-Tigger	59923	NM_001136127	26052	Hs.654775	NM_015569	HPRD:13241	DNM3	Dyna III	dynamin 3	protein-coding
19-PTNLD28-TUMOR_peak_75856	chr4	78923559	78923699	+	13.94772	NA	Intergenic	Intergenic	-55095	NM_025074	80144	Hs.369448	NM_020875	HPRD:06382	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_72464	chr3	176840005	176840178	+	13.94772	NA	intron (NM_024665, intron 1 of 15)	intron (NM_024665, intron 1 of 15)	74957	NM_024665	79718	Hs.715026	NM_024665	HPRD:15476	TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_14912	chr10	93847561	93847739	+	13.94772	NA	intron (NM_014912, intron 8 of 9)	intron (NM_014912, intron 8 of 9)	155386	NM_001178137	22849	Hs.131683	NM_014912	HPRD:16745	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_69964	chr3	115553043	115553250	+	13.94772	NA	intron (NM_002338, intron 6 of 6)	intron (NM_002338, intron 6 of 6)	210995	NM_001130064	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_67026	chr3	18195117	18195298	+	13.94772	NA	intron (NM_001257177, intron 4 of 4)	MLT2B5|LTR|ERVL	191143	NM_001257177	339862	Hs.652981	NM_001257177		LOC339862	-	uncharacterized LOC339862	protein-coding
19-PTNLD28-TUMOR_peak_37683	chr16	48617352	48617957	+	13.94772	NA	intron (NM_153029, intron 1 of 6)	LTR37B|LTR|ERV1	26466	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_28039	chr13	44147615	44147790	+	13.94772	NA	intron (NM_001242863, intron 2 of 16)	intron (NM_001242863, intron 2 of 16)	55911	NM_001127615	55068	Hs.128258	NM_017993	HPRD:07644	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
19-PTNLD28-TUMOR_peak_17397	chr11	15649188	15649332	+	13.94772	NA	Intergenic	L2a|LINE|L2	-16171	NM_001293172	102724957	Hs.512245	NM_001293172		LOC102724957	-	uncharacterized LOC102724957	protein-coding
19-PTNLD28-TUMOR_peak_35225	chr15	91318409	91318606	+	13.94772	NA	intron (NM_001287247, intron 12 of 19)	intron (NM_001287247, intron 12 of 19)	57949	NM_001287246	641	Hs.725208	NM_000057	HPRD:05211	BLM	BS|RECQ2|RECQL2|RECQL3	Bloom syndrome, RecQ helicase-like	protein-coding
19-PTNLD28-TUMOR_peak_28203	chr13	49403140	49403254	+	13.94772	NA	Intergenic	Intergenic	122246	NM_020377	57105	Hs.253706	NM_020377	HPRD:09293	CYSLTR2	CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_76472	chr4	106013597	106013857	+	13.94772	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-53305	NM_017628	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_97087	chr8	9226580	9226758	+	13.94772	NA	Intergenic	Intergenic	44108	NR_040039	157273	Hs.650222	NR_040039	ENSG00000254235	LOC157273	-	uncharacterized LOC157273	ncRNA
19-PTNLD28-TUMOR_peak_97164	chr8	11338569	11338676	+	13.94772	NA	Intergenic	Intergenic	-12899	NM_001715	640	Hs.146591	NM_001715	HPRD:01866	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_77257	chr4	141084127	141084374	+	13.94772	NA	Intergenic	Intergenic	-9017	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_96925	chr8	6578344	6578529	+	13.94772	NA	intron (NM_018361, intron 1 of 7)	intron (NM_018361, intron 1 of 7)	12558	NM_018361	55326	Hs.624002	NM_018361		AGPAT5	1AGPAT5|LPAATE	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_83264	chr5	150695699	150695862	+	13.94772	NA	3' UTR (NM_181776, exon 10 of 10)	3' UTR (NM_181776, exon 10 of 10)	-12446	NM_001145017	285641	Hs.720893	NM_181774	HPRD:12216	SLC36A3	PAT3|TRAMD2|tramdorin2	solute carrier family 36, member 3	protein-coding
19-PTNLD28-TUMOR_peak_29126	chr13	113461196	113461458	+	13.94772	NA	intron (NM_032189, intron 4 of 28)	L1MB7|LINE|L1	-52282	NR_046661	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45416	chr18	42276989	42277212	+	13.94772	NA	intron (NM_015559, intron 1 of 5)	intron (NM_015559, intron 1 of 5)	16237	NM_015559	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_30575	chr14	59583878	59584142	+	13.94772	NA	Intergenic	Intergenic	-71371	NM_001270520	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_107471	chrX	8001348	8001478	+	13.94772	NA	Intergenic	LTR16C|LTR|ERVL	-93593	NR_030380	723779		NR_030380	miRBase:MI0003666	MIR651	MIRN651|hsa-mir-651	microRNA 651	ncRNA
19-PTNLD28-TUMOR_peak_108693	chrX	71137446	71137772	+	13.94772	NA	intron (NM_001013627, intron 1 of 7)	L2b|LINE|L2	6671	NM_001013627	340527	Hs.397836	NM_001013627	HPRD:15001	NHSL2	-	NHS-like 2	protein-coding
19-PTNLD28-TUMOR_peak_97366	chr8	18120431	18120626	+	13.94772	NA	Intergenic	LTR49-int|LTR|ERV1	41351	NM_001160174	9	Hs.591847	NM_000662	HPRD:00149	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_46126	chr18	61455808	61455914	+	13.94772	NA	intron (NM_001261831, intron 2 of 6)	Tigger3b|DNA|TcMar-Tigger	10850	NM_001261830	8710	Hs.138202	NM_003784	HPRD:04524	SERPINB7	MEGSIN|PPKN|TP55	serpin peptidase inhibitor, clade B (ovalbumin), member 7	protein-coding
19-PTNLD28-TUMOR_peak_68775	chr3	64307484	64307645	+	13.94772	NA	Intergenic	Intergenic	-96433	NM_198859	166336	Hs.148105	NM_198859	HPRD:16342	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_18377	chr11	46028108	46028226	+	13.94772	NA	intron (NM_001101802, intron 5 of 17)	intron (NM_001101802, intron 5 of 17)	83940	NM_001300721	120071	Hs.86543	NM_152312	HPRD:13618	GYLTL1B	LARGE2	glycosyltransferase-like 1B	protein-coding
19-PTNLD28-TUMOR_peak_93230	chr7	73375001	73375216	+	13.94772	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-67011	NM_001278914	2006	Hs.647061	NM_000501	HPRD:00556	ELN	SVAS|WBS|WS	elastin	protein-coding
19-PTNLD28-TUMOR_peak_5147	chr1	100056412	100056709	+	13.94772	NA	Intergenic	Intergenic	-54871	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_29677	chr14	28332513	28332682	+	13.94772	NA	Intergenic	Intergenic	250803	NR_039992	100505967	Hs.668484	NR_039992	ENSG00000258548	LINC00645	-	long intergenic non-protein coding RNA 645	ncRNA
19-PTNLD28-TUMOR_peak_16710	chr11	3071120	3071371	+	13.94772	NA	intron (NM_001014437, intron 1 of 22)	intron (NM_001014437, intron 1 of 22)	7436	NM_001014437	833	Hs.274873	NM_001751	HPRD:00464	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_41577	chr17	41047327	41047458	+	13.94772	NA	intron (NR_027254, intron 1 of 5)	intron (NR_027254, intron 1 of 5)	3359	NR_027254	388387	Hs.632257	NM_207388	HPRD:13404	LINC00671	-	long intergenic non-protein coding RNA 671	ncRNA
19-PTNLD28-TUMOR_peak_58093	chr2	208592094	208592211	+	13.94772	NA	intron (NM_001142300, intron 3 of 7)	intron (NM_001142300, intron 3 of 7)	15888	NM_152523	151195	Hs.471234	NM_152523	HPRD:08809	CCNYL1	-	cyclin Y-like 1	protein-coding
19-PTNLD28-TUMOR_peak_98362	chr8	40691534	40691662	+	13.94772	NA	intron (NM_001135731, intron 1 of 5)	intron (NM_001135731, intron 1 of 5)	63745	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_77606	chr4	152665931	152666063	+	13.94772	NA	intron (NM_004564, intron 2 of 12)	intron (NM_004564, intron 2 of 12)	16178	NM_004564	5188	Hs.119316	NM_004564	HPRD:04706	GATB	PET112|PET112L	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_12842	chr10	33238155	33238447	+	13.94772	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	8521	NM_133376	3688	Hs.643813	NM_002211	HPRD:00628	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	protein-coding
19-PTNLD28-TUMOR_peak_76396	chr4	101211912	101212124	+	13.94772	NA	Intergenic	Intergenic	-100363	NM_145244	115265	Hs.480378	NM_145244	HPRD:09663	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
19-PTNLD28-TUMOR_peak_16188	chr10	127661965	127662111	+	13.94772	NA	promoter-TSS (NR_102707)	promoter-TSS (NR_102707)	-196	NR_102707	101410540	Hs.557889	NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14642	chr10	82707162	82707376	+	13.94772	NA	Intergenic	MER41A|LTR|ERV1	406694	NM_001145719	387694	Hs.147643	NM_207372	HPRD:18050	SH2D4B	-	SH2 domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_108592	chrX	67452164	67452307	+	13.94772	NA	intron (NM_002547, intron 6 of 24)	MER68|LTR|ERVL	201064	NM_002547	4983	Hs.128824	NM_002547	HPRD:02130	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
19-PTNLD28-TUMOR_peak_35381	chr15	98224131	98224345	+	13.94772	NA	Intergenic	Intergenic	-120310	NR_110756	101927310	Hs.560324	NR_110756	ENSG00000259582	LOC101927310	-	uncharacterized LOC101927310	ncRNA
19-PTNLD28-TUMOR_peak_23976	chr12	47308963	47309105	+	13.94772	NA	Intergenic	Intergenic	-89254	NM_018018	55089	Hs.446077	NM_018018	HPRD:12159	SLC38A4	ATA3|NAT3|PAAT	solute carrier family 38, member 4	protein-coding
19-PTNLD28-TUMOR_peak_93682	chr7	81679575	81679783	+	13.94772	NA	intron (NM_000722, intron 10 of 38)	LTR40A1|LTR|ERVL	41186	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA
19-PTNLD28-TUMOR_peak_41851	chr17	43845500	43845657	+	13.94772	NA	intron (NM_001256299, intron 3 of 14)	intron (NM_001256299, intron 3 of 14)	-16068	NM_001145146	1394	Hs.417628	NM_004382	HPRD:08830	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f	corticotropin releasing hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_45452	chr18	43232798	43232995	+	13.94772	NA	intron (NM_007163, intron 10 of 19)	intron (NM_007163, intron 10 of 19)	38130	NM_007163	8170	Hs.710927	NM_007163	HPRD:03366	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 (urea transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_36197	chr16	10002553	10002771	+	13.94772	NA	intron (NM_000833, intron 4 of 13)	intron (NM_000833, intron 4 of 13)	273262	NM_001134408	2903	Hs.411472	NM_000833	HPRD:00698	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	protein-coding
19-PTNLD28-TUMOR_peak_89172	chr6	113754716	113754922	+	13.94772	NA	Intergenic	Intergenic	-423708	NM_002356	4082	Hs.519909	NM_002356	HPRD:07519	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
19-PTNLD28-TUMOR_peak_67993	chr3	47653849	47653977	+	13.94772	NA	intron (NM_003074, intron 25 of 27)	intron (NM_003074, intron 25 of 27)	-32183	NM_001206942	10675	Hs.45127	NM_006574		CSPG5	NGC	chondroitin sulfate proteoglycan 5 (neuroglycan C)	protein-coding
19-PTNLD28-TUMOR_peak_88533	chr6	83528459	83528739	+	13.94772	NA	Intergenic	L2|LINE|L2	246946	NM_198920	90025	Hs.148609	NM_198920	HPRD:12861	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
19-PTNLD28-TUMOR_peak_25178	chr12	69224093	69224260	+	13.94772	NA	intron (NM_001145337, intron 8 of 10)	intron (NM_001145337, intron 8 of 10)	21379	NM_001278462	4193	Hs.484551	NM_002392	HPRD:01272	MDM2	ACTFS|HDMX|hdm2	MDM2 proto-oncogene, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_42587	chr17	56442092	56442248	+	13.94772	NA	intron (NM_017763, intron 3 of 9)	intron (NM_017763, intron 3 of 9)	-12571	NR_073470	6827	Hs.439481	NM_003168	HPRD:16026	SUPT4H1	SPT4|SPT4H|SUPT4H	suppressor of Ty 4 homolog 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_15358	chr10	104343692	104343797	+	13.94772	NA	intron (NM_016169, intron 3 of 11)	intron (NM_016169, intron 3 of 11)	-60508	NM_030912	81603	Hs.336810	NM_030912	HPRD:06934	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
19-PTNLD28-TUMOR_peak_21248	chr11	113474039	113474314	+	13.94772	NA	Intergenic	Intergenic	102919	NR_110047	80975	Hs.46720	NM_030770	HPRD:05995	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
19-PTNLD28-TUMOR_peak_15540	chr10	108610094	108610219	+	13.94772	NA	intron (NM_001013031, intron 2 of 26)	L1PA2|LINE|L1	314310	NM_001206572	114815	Hs.591915	NM_052918	HPRD:12098	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_15914	chr10	120706805	120706954	+	13.94772	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-82349	NM_199461	340719	Hs.591918	NM_199461	HPRD:16302	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_30596	chr14	59901457	59901653	+	13.94772	NA	Intergenic	L3|LINE|CR1	30504	NM_022571	64582	Hs.647573	NM_022571		GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
19-PTNLD28-TUMOR_peak_87906	chr6	49998737	49998858	+	13.94772	NA	Intergenic	L1P4a|LINE|L1	-9103	NM_001037497	245913	Hs.571093	NM_001037497	ENSG00000203970	DEFB110	DEFB-10|DEFB-11|DEFB111	defensin, beta 110 locus	protein-coding
19-PTNLD28-TUMOR_peak_57595	chr2	196440800	196441077	+	13.94772	NA	Intergenic	Intergenic	-80594	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_103770	chr9	73432283	73432516	+	13.94772	NA	intron (NM_001007470, intron 6 of 7)	MLT1J|LTR|ERVL-MaLR	-7399	NR_029621	406987		NR_029621		MIR204	MIRN204|miRNA204	microRNA 204	ncRNA
19-PTNLD28-TUMOR_peak_67610	chr3	39208815	39208961	+	13.94772	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-13786	NM_033027	64651	Hs.370950	NM_033027	HPRD:07347	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine-serine-rich nuclear protein 1	protein-coding
19-PTNLD28-TUMOR_peak_76512	chr4	108104456	108104596	+	13.94772	NA	Intergenic	Intergenic	-147073	NM_014421	27123	Hs.211869	NM_014421	HPRD:05658	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_31521	chr14	81780206	81780389	+	13.94772	NA	intron (NM_001256430, intron 5 of 7)	L2b|LINE|L2	-92722	NM_201595	2957	Hs.592334	NM_015859	HPRD:02748	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA, 1, 19/37kDa	protein-coding
19-PTNLD28-TUMOR_peak_63481	chr21	39073023	39073226	+	13.94772	NA	intron (NM_002240, intron 3 of 3)	MER91B|DNA|hAT-Tip100	215617	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_50309	chr19	55275795	55275931	+	13.94772	NA	Intergenic	Intergenic	-5402	NM_014218	3802	Hs.654605	NM_014218	HPRD:12000	KIR2DL1	CD158A|KIR-K64|KIR221|NKAT|NKAT-1|NKAT1|p58.1	killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1	protein-coding
19-PTNLD28-TUMOR_peak_54907	chr2	111489998	111490302	+	13.94772	NA	promoter-TSS (NM_001142807)	promoter-TSS (NM_001142807)	0	NM_001142807	55289	Hs.253320	NM_018308	HPRD:12418	ACOXL	-	acyl-CoA oxidase-like	protein-coding
19-PTNLD28-TUMOR_peak_31383	chr14	76939968	76940425	+	13.94772	NA	intron (NM_004452, intron 5 of 10)	intron (NM_004452, intron 5 of 10)	102506	NM_004452	2103	Hs.435845	NM_004452	HPRD:03700	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_90252	chr6	158282947	158283097	+	13.94772	NA	intron (NM_016224, intron 1 of 17)	MER44B|DNA|TcMar-Tigger	38819	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_77385	chr4	144325792	144325937	+	13.94772	NA	intron (NM_207123, intron 1 of 10)	AluJr|SINE|Alu	67881	NM_002039	2549	Hs.80720	NM_002039	HPRD:05116	GAB1	-	GRB2-associated binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10215	chr1	222182389	222182690	+	13.94772	NA	Intergenic	Intergenic	-267021	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_92207	chr7	43333937	43334174	+	13.94772	NA	intron (NM_015052, intron 3 of 29)	intron (NM_015052, intron 3 of 29)	143561	NR_037508	100500829		NR_037508		MIR3943	-	microRNA 3943	ncRNA
19-PTNLD28-TUMOR_peak_57165	chr2	178037116	178037237	+	13.94772	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-40246	NM_194247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
19-PTNLD28-TUMOR_peak_88578	chr6	85231980	85232134	+	13.94772	NA	Intergenic	Intergenic	241897	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_104844	chr9	99962132	99962243	+	13.94772	NA	Intergenic	CpG	-38521	NR_036527	57653	Hs.435629	NR_036527		LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
19-PTNLD28-TUMOR_peak_23985	chr12	47386063	47386191	+	13.94772	NA	Intergenic	L1PA4|LINE|L1	-87259	NM_001281429	91523	Hs.560100	NM_138371	HPRD:17513	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_12631	chr10	29142228	29142398	+	13.94772	NA	intron (NM_001278522, intron 3 of 4)	LTR33|LTR|ERVL	6976	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
19-PTNLD28-TUMOR_peak_3859	chr1	59825963	59826138	+	13.94772	NA	intron (NM_001113411, intron 4 of 16)	intron (NM_001113411, intron 4 of 16)	50300	NM_001244714	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_89479	chr6	132317216	132317353	+	13.94772	NA	Intergenic	Intergenic	-44766	NM_001901	1490	Hs.410037	NM_001901	HPRD:00412	CTGF	CCN2|HCS24|IGFBP8|NOV2	connective tissue growth factor	protein-coding
19-PTNLD28-TUMOR_peak_88412	chr6	76974341	76974483	+	13.94772	NA	Intergenic	L2b|LINE|L2	-192017	NM_001282368	3617	Hs.590893	NM_001563	HPRD:04186	IMPG1	GP147|IPM150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding
19-PTNLD28-TUMOR_peak_100221	chr8	117813433	117813606	+	13.94772	NA	Intergenic	L2c|LINE|L2	34777	NM_032334	84294	Hs.86970	NM_032334	HPRD:17499	UTP23	C8orf53	UTP23, small subunit (SSU) processome component, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_91553	chr7	22186824	22187032	+	13.94772	NA	intron (NM_012294, intron 18 of 25)	intron (NM_012294, intron 18 of 25)	-201386	NM_001127370	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_25520	chr12	89328289	89328494	+	13.94772	NA	Intergenic	Intergenic	85078	NR_038385	728084	Hs.132563	NR_038385	ENSG00000246363	LOC728084	-	uncharacterized LOC728084	ncRNA
19-PTNLD28-TUMOR_peak_87722	chr6	44852891	44853070	+	13.94772	NA	intron (NM_003599, intron 10 of 10)	L1PA3|LINE|L1	312527	NR_030313	693171		NR_030313		MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
19-PTNLD28-TUMOR_peak_16166	chr10	127087966	127088210	+	13.94772	NA	Intergenic	L3|LINE|CR1	-174852	NR_023362	100169752	Hs.652647	NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93627	chr7	79848065	79848282	+	13.94772	NA	3' UTR (NM_002069, exon 8 of 8)	3' UTR (NM_002069, exon 8 of 8)	83102	NM_001256414	2770	Hs.134587	NM_002069	HPRD:00756	GNAI1	Gi	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_79380	chr5	33068994	33069197	+	13.94772	NA	Intergenic	L2c|LINE|L2	121546	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
19-PTNLD28-TUMOR_peak_80773	chr5	75587232	75587363	+	13.94772	NA	intron (NM_001297716, intron 7 of 12)	intron (NM_001297716, intron 7 of 12)	-111783	NM_006633	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_65911	chr22	45642300	45642473	+	13.94772	NA	Intergenic	Intergenic	-5736	NM_001009880	23313	Hs.592207	NM_015264	HPRD:12802	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
19-PTNLD28-TUMOR_peak_52697	chr2	48625458	48625643	+	13.94772	NA	Intergenic	Intergenic	-42358	NM_001135629	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_29022	chr13	110141423	110141637	+	13.94772	NA	Intergenic	MER1B|DNA|hAT-Charlie	-239091	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
19-PTNLD28-TUMOR_peak_109521	chrX	133646646	133646862	+	13.94772	NA	Intergenic	Intergenic	27538	NR_030587	100126302		NR_030587	miRBase:MI0005531	MIR450B	MIRN450B	microRNA 450b	ncRNA
19-PTNLD28-TUMOR_peak_92644	chr7	55328519	55328659	+	13.94772	NA	Intergenic	L1M3e|LINE|L1	-5261	NR_110426	102725541	Hs.590524	NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
19-PTNLD28-TUMOR_peak_51525	chr2	23453466	23453704	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	-154713	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_97951	chr8	29133692	29133828	+	13.94772	NA	Intergenic	Intergenic	-13150	NM_015254	23303	Hs.444767	NM_015254	HPRD:09556	KIF13B	GAKIN	kinesin family member 13B	protein-coding
19-PTNLD28-TUMOR_peak_108748	chrX	72797308	72797479	+	13.94772	NA	intron (NM_001300884, intron 2 of 4)	intron (NM_001300884, intron 2 of 4)	14409	NM_001039840	53344	Hs.496323	NM_001039840	ENSG00000204116	CHIC1	BRX	cysteine-rich hydrophobic domain 1	protein-coding
19-PTNLD28-TUMOR_peak_107935	chrX	37731367	37731494	+	13.94772	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-24541	NM_006520	6990	Hs.446392	NM_006520	HPRD:02249	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein, light chain, Tctex-type 3	protein-coding
19-PTNLD28-TUMOR_peak_82704	chr5	140729556	140729730	+	13.94772	NA	promoter-TSS (NM_018922)	promoter-TSS (NM_018922)	-185	NM_018922	56104	Hs.368160	NM_018922	HPRD:09389	PCDHGB1	PCDH-GAMMA-B1	protocadherin gamma subfamily B, 1	protein-coding
19-PTNLD28-TUMOR_peak_28061	chr13	44842112	44842463	+	13.94772	NA	Intergenic	Intergenic	-71951	NR_107046	102465876		NR_107046		MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
19-PTNLD28-TUMOR_peak_67920	chr3	46376647	46376901	+	13.94772	NA	Intergenic	Intergenic	-18461	NM_001123041	729230	Hs.511794	NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R	chemokine (C-C motif) receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_13790	chr10	61998314	61998473	+	13.94772	NA	intron (NM_001204403, intron 8 of 43)	L1MEf|LINE|L1	-97619	NM_001149	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_35216	chr15	90963279	90963416	+	13.94772	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	31874	NM_003870	8826	Hs.430551	NM_003870	HPRD:04541	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_8580	chr1	180742553	180742843	+	13.94772	NA	intron (NM_001135669, intron 2 of 13)	intron (NM_001135669, intron 2 of 13)	-139615	NM_020950	57710	Hs.734816	NM_020950		KIAA1614	-	KIAA1614	protein-coding
19-PTNLD28-TUMOR_peak_11117	chr1	236006809	236006940	+	13.94772	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	9486	NR_031718	100302139		NR_031718	miRBase:MI0007258	MIR1537	MIRN1537|hsa-mir-1537	microRNA 1537	ncRNA
19-PTNLD28-TUMOR_peak_30509	chr14	57929353	57929599	+	13.94772	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	31105	NM_001283057	55195	Hs.659706	NM_018168	HPRD:12628	C14orf105	-	chromosome 14 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_76390	chr4	100927133	100927297	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	55579	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	ncRNA
19-PTNLD28-TUMOR_peak_71055	chr3	135711000	135711129	+	13.94772	NA	intron (NM_001190447, intron 1 of 12)	intron (NM_001190447, intron 1 of 12)	26549	NM_002718	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_105479	chr9	115565893	115566027	+	13.94772	NA	intron (NM_001012994, intron 1 of 8)	L1HS|LINE|L1	52826	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
19-PTNLD28-TUMOR_peak_79455	chr5	34898509	34898616	+	13.94772	NA	intron (NM_144725, intron 10 of 10)	intron (NM_144725, intron 10 of 10)	17169	NR_026591	5810	Hs.38114	NM_002853	HPRD:04400	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
19-PTNLD28-TUMOR_peak_72099	chr3	160526408	160526635	+	13.94772	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	52525	NM_139245	151742	Hs.389027	NM_139245		PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent, 1L	protein-coding
19-PTNLD28-TUMOR_peak_77447	chr4	146631158	146631319	+	13.94772	NA	intron (NM_001080531, intron 2 of 5)	intron (NM_001080531, intron 2 of 5)	29882	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
19-PTNLD28-TUMOR_peak_19990	chr11	73865763	73866076	+	13.94772	NA	intron (NM_001286577, intron 3 of 32)	L1MEc|LINE|L1	16145	NM_001286577	26005	Hs.557938	NM_015531	HPRD:16811	C2CD3	-	C2 calcium-dependent domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_28953	chr13	106650028	106650205	+	13.94772	NA	Intergenic	Intergenic	290937	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_91701	chr7	25935100	25935252	+	13.94772	NA	Intergenic	Intergenic	54430	NR_029597	406940		NR_029597	miRBase:MI0000253	MIR148A	MIRN148|MIRN148A|hsa-mir-148	microRNA 148a	ncRNA
19-PTNLD28-TUMOR_peak_44513	chr18	9743523	9743738	+	13.94772	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	35402	NM_006868	11031	Hs.99528	NM_006868	HPRD:05751	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_54636	chr2	105051001	105051301	+	13.94772	NA	intron (NR_015399, intron 1 of 3)	intron (NR_015399, intron 1 of 3)	346	NR_015399	150568	Hs.107284	NR_015399	ENSG00000235597	LINC01102	-	long intergenic non-protein coding RNA 1102	ncRNA
19-PTNLD28-TUMOR_peak_78736	chr5	4700249	4700569	+	13.94772	NA	Intergenic	Intergenic	-73185	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_16284	chr10	131536247	131536388	+	13.94772	NA	intron (NM_002412, intron 3 of 4)	L1PA3|LINE|L1	105321	NR_036179	100422873		NR_036179		MIR4297	-	microRNA 4297	ncRNA
19-PTNLD28-TUMOR_peak_89689	chr6	139656024	139656247	+	13.94772	NA	Intergenic	Intergenic	39215	NM_001168389	10370	Hs.82071	NM_006079	HPRD:04245	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
19-PTNLD28-TUMOR_peak_3704	chr1	55546943	55547129	+	13.94772	NA	exon (NM_015306, exon 59 of 68)	exon (NM_015306, exon 59 of 68)	41141	NR_110451	255738	Hs.18844	NM_174936	HPRD:07080	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
19-PTNLD28-TUMOR_peak_57410	chr2	189653433	189653573	+	13.94772	NA	intron (NM_052952, intron 1 of 1)	intron (NM_052952, intron 1 of 1)	1328	NM_052952	116093	Hs.470892	NM_052952		DIRC1	-	disrupted in renal carcinoma 1	protein-coding
19-PTNLD28-TUMOR_peak_91423	chr7	17827021	17827128	+	13.94772	NA	Intergenic	Intergenic	153057	NM_015132	23161	Hs.487648	NM_015132	HPRD:09418	SNX13	RGS-PX1	sorting nexin 13	protein-coding
19-PTNLD28-TUMOR_peak_44747	chr18	14914259	14914393	+	13.94772	NA	Intergenic	Intergenic	-31940	NR_104164	400644	Hs.514732	NR_104164	ENSG00000266554	LINC01443	-	long intergenic non-protein coding RNA 1443	ncRNA
19-PTNLD28-TUMOR_peak_57243	chr2	180389791	180389947	+	13.94772	NA	intron (NM_152520, intron 4 of 9)	intron (NM_152520, intron 4 of 9)	37446	NM_001113398	151126	Hs.655005	NM_152520	HPRD:15823	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
19-PTNLD28-TUMOR_peak_54548	chr2	101882579	101882895	+	13.94772	NA	intron (NM_017546, intron 4 of 6)	intron (NM_017546, intron 4 of 6)	6774	NR_003070	692205	Hs.656503	NR_003070		SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
19-PTNLD28-TUMOR_peak_34918	chr15	83961123	83961378	+	13.94772	NA	Intergenic	Intergenic	-7782	NM_001717	646	Hs.459153	NM_001717	HPRD:11799	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
19-PTNLD28-TUMOR_peak_34200	chr15	69301751	69302010	+	13.94772	NA	intron (NR_033672, intron 2 of 16)	L1MB3|LINE|L1	-5154	NM_024505	79400	Hs.657932	NM_024505	HPRD:07359	NOX5	-	NADPH oxidase, EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_28727	chr13	96217364	96217581	+	13.94772	NA	intron (NM_182848, intron 3 of 4)	intron (NM_182848, intron 3 of 4)	12525	NM_006984	9071	Hs.534377	NM_006984	HPRD:13063	CLDN10	CPETRL3|OSP-L	claudin 10	protein-coding
19-PTNLD28-TUMOR_peak_75324	chr4	54363791	54363919	+	13.94772	NA	intron (NM_001126328, intron 5 of 10)	intron (NM_001126328, intron 5 of 10)	-2389	NR_046622	100873939	Hs.662372	NR_046622	ENSG00000250930	LNX1-AS1	-	LNX1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71568	chr3	148661476	148661589	+	13.94772	NA	Intergenic	Intergenic	-47663	NM_001184721	2992	Hs.477892	NM_004130	HPRD:06805	GYG1	GSD15|GYG	glycogenin 1	protein-coding
19-PTNLD28-TUMOR_peak_54487	chr2	100997775	100997884	+	13.94772	NA	Intergenic	Intergenic	36301	NM_004854	9486	Hs.516370	NM_004854	HPRD:07332	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_9861	chr1	208905858	208906079	+	13.94772	NA	Intergenic	Intergenic	-488303	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_59783	chr20	10492267	10492464	+	13.94772	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	76414	NM_001009608	128710	Hs.668782	NM_001009608	HPRD:12516	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_12933	chr10	35549108	35549245	+	13.94772	NA	intron (NM_181698, intron 3 of 11)	intron (NM_181698, intron 3 of 11)	13267	NM_181698	219771	Hs.14745	NM_145012	HPRD:10700	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
19-PTNLD28-TUMOR_peak_88690	chr6	89533808	89533996	+	13.94772	NA	intron (NM_003800, intron 11 of 15)	Tigger3a|DNA|TcMar-Tigger	139446	NM_001286426	8732	Hs.567378	NM_003800	HPRD:04621	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_99479	chr8	91713508	91713757	+	13.94772	NA	Intergenic	MER58A|DNA|hAT-Charlie	-55499	NM_001008495	169200	Hs.567759	NM_001008495	HPRD:16822	TMEM64	-	transmembrane protein 64	protein-coding
19-PTNLD28-TUMOR_peak_57917	chr2	204514599	204514719	+	13.94772	NA	Intergenic	Intergenic	-56539	NM_006139	940	Hs.443123	NM_006139	HPRD:01727	CD28	Tp44	CD28 molecule	protein-coding
19-PTNLD28-TUMOR_peak_69366	chr3	98232076	98232342	+	13.94772	NA	Intergenic	Intergenic	9701	NM_001040199	56650	Hs.531371	NM_019895	HPRD:12822	CLDND1	C3orf4|GENX-3745	claudin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_75075	chr4	41283191	41283362	+	13.94772	NA	Intergenic	Intergenic	24378	NM_004181	7345	Hs.518731	NM_004181	HPRD:01877	UCHL1	HEL-117|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1	ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	protein-coding
19-PTNLD28-TUMOR_peak_62116	chr20	52864017	52864226	+	13.94772	NA	Intergenic	L2a|LINE|L2	39619	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_54758	chr2	109237622	109237767	+	13.94772	NA	promoter-TSS (NM_001193484)	promoter-TSS (NM_001193484)	-8	NM_001193484	3987	Hs.597715	NM_004987	HPRD:03978	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_57281	chr2	182219463	182219600	+	13.94772	NA	Intergenic	L2b|LINE|L2	-49152	NR_039637	100616213		NR_039637	miRBase:MI0016778	MIR4437	-	microRNA 4437	ncRNA
19-PTNLD28-TUMOR_peak_64633	chr22	22874032	22874170	+	13.94772	NA	intron (NM_080740, intron 1 of 1)	Tigger7|DNA|TcMar-Tigger	523	NM_080740	129025	Hs.178665	NM_080740	HPRD:18129	ZNF280A	3'OY11.1|SUHW1|ZNF280|ZNF636	zinc finger protein 280A	protein-coding
19-PTNLD28-TUMOR_peak_76527	chr4	108834507	108834664	+	13.94772	NA	3' UTR (NM_001136257, exon 6 of 6)	3' UTR (NM_001136257, exon 6 of 6)	-18132	NM_183075	113612	Hs.109087	NM_183075	HPRD:13109	CYP2U1	P450TEC|SPG49|SPG56	cytochrome P450, family 2, subfamily U, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_27924	chr13	40705528	40705661	+	13.94772	NA	Intergenic	MamSINE1|SINE|tRNA	-50352	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
19-PTNLD28-TUMOR_peak_80112	chr5	58894366	58894652	+	13.94772	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-12185	NM_006203	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_60442	chr20	30378389	30378495	+	13.94772	NA	intron (NM_012112, intron 12 of 17)	MARNA|DNA|TcMar-Mariner	-28736	NM_033118	85366	Hs.86092	NM_033118	HPRD:05953	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_23269	chr12	16119496	16119649	+	13.94772	NA	intron (NM_001300779, intron 5 of 7)	L2|LINE|L2	55466	NM_015954	51071	Hs.39429	NM_015954	HPRD:13138	DERA	DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_42498	chr17	55675137	55675411	+	13.94772	NA	intron (NM_138962, intron 8 of 13)	intron (NM_138962, intron 8 of 13)	10499	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_43157	chr17	67565383	67565656	+	13.94772	NA	Intergenic	Intergenic	-24609	NR_109971	101928122	Hs.579342	NR_109971	ENSG00000227517	LINC01483	-	long intergenic non-protein coding RNA 1483	ncRNA
19-PTNLD28-TUMOR_peak_100557	chr8	124771620	124771743	+	13.94772	NA	Intergenic	Intergenic	-9201	NM_144963	157769	Hs.459174	NM_144963	HPRD:08676	FAM91A1	-	family with sequence similarity 91, member A1	protein-coding
19-PTNLD28-TUMOR_peak_34194	chr15	69217350	69217461	+	13.94772	NA	intron (NR_031680, intron 2 of 4)	intron (NR_031680, intron 2 of 4)	-5434	NM_145658	246777	Hs.657932	NM_145658	HPRD:15436	SPESP1	ESP|SP-ESP	sperm equatorial segment protein 1	protein-coding
19-PTNLD28-TUMOR_peak_110117	chrY	2545918	2546072	+	13.94772	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-13233	NM_001277710	4267	Hs.653349	NM_002414	HPRD:02434	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
19-PTNLD28-TUMOR_peak_22054	chr11	128500393	128500510	+	13.94772	NA	Intergenic	Intergenic	-42998	NM_001143820	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_88697	chr6	89759961	89760210	+	13.94772	NA	Intergenic	Intergenic	-30344	NM_006813	10957	Hs.75969	NM_006813	HPRD:08412	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline-rich nuclear receptor coactivator 1	protein-coding
19-PTNLD28-TUMOR_peak_30556	chr14	59007883	59008228	+	13.94772	NA	intron (NM_001244191, intron 30 of 30)	L2b|LINE|L2	-92731	NR_046093	51339	Hs.48950	NM_016651	HPRD:09709	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding
19-PTNLD28-TUMOR_peak_85409	chr6	12275446	12275581	+	13.94772	NA	Intergenic	Intergenic	-15016	NM_001168319	1906	Hs.511899	NM_001955	HPRD:07030	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
19-PTNLD28-TUMOR_peak_100879	chr8	129389353	129389548	+	13.94772	NA	Intergenic	LTR12D|LTR|ERV1	187475	NR_121672	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_76217	chr4	89273359	89273505	+	13.94772	NA	Intergenic	LTR49|LTR|ERV1	-26459	NM_001165136	55008	Hs.529317	NM_017912	HPRD:13647	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
19-PTNLD28-TUMOR_peak_25480	chr12	83410094	83410266	+	13.94772	NA	intron (NM_152588, intron 8 of 11)	L2b|LINE|L2	329246	NM_152588	160335	Hs.577775	NM_152588	HPRD:13230	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_48675	chr19	35896207	35896529	+	13.94772	NA	promoter-TSS (NR_040046)	promoter-TSS (NR_040046)	-141	NR_040046	100128682	Hs.570008	NR_040046	ENSG00000205786	LOC100128682	-	uncharacterized LOC100128682	ncRNA
19-PTNLD28-TUMOR_peak_107537	chrX	10940305	10940595	+	13.94772	NA	Intergenic	L2b|LINE|L2	-88641	NM_033290	4281	Hs.27695	NM_000381	HPRD:02047	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
19-PTNLD28-TUMOR_peak_99294	chr8	81003928	81004121	+	13.94772	NA	intron (NM_001025253, intron 1 of 7)	MER5A1|DNA|hAT-Charlie	-10958	NM_001287140	7163	Hs.368433	NM_005079	HPRD:04963	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
19-PTNLD28-TUMOR_peak_9935	chr1	211763575	211763716	+	13.94772	NA	Intergenic	AluSz6|SINE|Alu	-11546	NM_021194	7779	Hs.519469	NM_021194		SLC30A1	ZNT1|ZRC1	solute carrier family 30 (zinc transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_105822	chr9	123485980	123486257	+	13.94772	NA	Intergenic	Intergenic	-9353	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
19-PTNLD28-TUMOR_peak_35094	chr15	88900799	88900902	+	13.94772	NA	Intergenic	L1PA4|LINE|L1	-100888	NM_001012338	4916	Hs.410969	NM_002530	HPRD:01870	NTRK3	TRKC|gp145(trkC)	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_74428	chr4	9467628	9467729	+	13.94772	NA	Intergenic	LTR5A|LTR|ERVK	21418	NM_001040448	644414	Hs.590200	NM_001040448	ENSG00000186146	DEFB131	DEFB-31	defensin, beta 131	protein-coding
19-PTNLD28-TUMOR_peak_33015	chr15	34689989	34690139	+	13.94772	NA	intron (NR_027409, intron 8 of 23)	intron (NR_027409, intron 8 of 23)	-8063	NM_181077	23015	Hs.182982	NM_181077	HPRD:09974	GOLGA8A	GM88	golgin A8 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_45405	chr18	42175209	42175314	+	13.94772	NA	Intergenic	Intergenic	-63599	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_29774	chr14	32867489	32867804	+	13.94772	NA	intron (NM_004274, intron 1 of 13)	intron (NM_004274, intron 1 of 13)	69167	NM_004274	9472	Hs.509083	NM_004274	HPRD:05257	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
19-PTNLD28-TUMOR_peak_88355	chr6	74442938	74443055	+	13.94772	NA	intron (NM_133493, intron 4 of 32)	intron (NM_133493, intron 4 of 32)	-37142	NR_110889	101928489	Hs.660059	NR_110889		LOC101928489	-	uncharacterized LOC101928489	ncRNA
19-PTNLD28-TUMOR_peak_92000	chr7	35577016	35577303	+	13.94772	NA	Intergenic	CpG	157613	NM_022373	64224	Hs.643051	NM_022373	HPRD:07984	HERPUD2	-	HERPUD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_102102	chr9	6069008	6069291	+	13.94772	NA	Intergenic	Intergenic	-53509	NM_012416	26953	Hs.167496	NM_012416	HPRD:17953	RANBP6	-	RAN binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_96138	chr7	147545423	147545678	+	13.94772	NA	intron (NM_014141, intron 13 of 23)	L1HS|LINE|L1	-46821	NR_031644	100302159		NR_031644		MIR548F3	MIR548F-3|MIRN548F3|hsa-mir-548f-3	microRNA 548f-3	ncRNA
19-PTNLD28-TUMOR_peak_107874	chrX	30392185	30392347	+	13.94772	NA	Intergenic	Intergenic	-64771	NM_000475	190	Hs.268490	NM_000475		NR0B1	AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2	nuclear receptor subfamily 0, group B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_43577	chr17	74620116	74620246	+	13.94772	NA	TTS (NM_018414)	TTS (NM_018414)	19739	NM_018414	55808	Hs.105352	NM_018414	HPRD:15340	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_34743	chr15	79576068	79576205	+	13.94772	NA	non-coding (NR_038997, exon 1 of 2)	non-coding (NR_038997, exon 1 of 2)	151	NR_038997	729911	Hs.513931	NR_038997	ENSG00000259234	LOC729911	-	uncharacterized LOC729911	ncRNA
19-PTNLD28-TUMOR_peak_94016	chr7	94876267	94876425	+	13.94772	NA	intron (NM_017650, intron 7 of 15)	intron (NM_017650, intron 7 of 15)	77538	NM_000446	5444	Hs.370995	NM_000446		PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
19-PTNLD28-TUMOR_peak_68774	chr3	64281416	64281528	+	13.94772	NA	Intergenic	Intergenic	-70341	NM_198859	166336	Hs.148105	NM_198859	HPRD:16342	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_14086	chr10	71718137	71718283	+	13.94772	NA	intron (NM_080800, intron 37 of 37)	intron (NM_080800, intron 37 of 37)	-94147	NM_018649	55506	Hs.499953	NM_018649	HPRD:13625	H2AFY2	macroH2A2	H2A histone family, member Y2	protein-coding
19-PTNLD28-TUMOR_peak_45864	chr18	54136867	54137164	+	13.94772	NA	Intergenic	MER92C|LTR|ERV1	168905	NM_004786	9352	Hs.114412	NM_004786		TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_30861	chr14	67654012	67654152	+	13.94772	NA	Intergenic	L2c|LINE|L2	-2028	NM_173526	161142	Hs.412818	NM_173526	HPRD:12653	FAM71D	C14orf54	family with sequence similarity 71, member D	protein-coding
19-PTNLD28-TUMOR_peak_53216	chr2	67538747	67538963	+	13.94772	NA	Intergenic	Intergenic	-85587	NM_019002	54465	Hs.353022	NM_019002	HPRD:13282	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_18789	chr11	60258447	60258583	+	13.94772	NA	Intergenic	SVA_C|Other|Other	-1736	NM_001164470	54860	Hs.272789	NM_017716	HPRD:08410	MS4A12	Ms4a10	membrane-spanning 4-domains, subfamily A, member 12	protein-coding
19-PTNLD28-TUMOR_peak_108731	chrX	71792903	71793021	+	13.94772	NA	promoter-TSS (NM_001166422)	promoter-TSS (NM_001166422)	-9	NM_001166418	55869	Hs.310536	NM_018486	HPRD:02227	HDAC8	CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
19-PTNLD28-TUMOR_peak_23509	chr12	27295172	27295286	+	13.94772	NA	Intergenic	Intergenic	-59774	NM_001080406	728858	Hs.334003	NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_109755	chrX	149849592	149849718	+	13.94772	NA	Intergenic	MERX|DNA|TcMar-Tigger	-12214	NM_003828	8776	Hs.347187	NM_003828	HPRD:02163	MTMR1	-	myotubularin related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_12287	chr10	20411390	20411513	+	13.94772	NA	intron (NM_001282736, intron 3 of 12)	HERVH-int|LTR|ERV1	306079	NM_032812	84898	Hs.99472	NM_032812	HPRD:08440	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_75563	chr4	68042795	68042939	+	13.94772	NA	Intergenic	L1PA2|LINE|L1	244851	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_107381	chrX	2595918	2596072	+	13.94772	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-13233	NM_001277710	4267	Hs.653349	NM_002414	HPRD:02434	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
19-PTNLD28-TUMOR_peak_58632	chr2	224882795	224882947	+	13.94772	NA	intron (NM_006216, intron 1 of 8)	intron (NM_006216, intron 1 of 8)	13324	NR_073116	5270	Hs.38449	NM_006216	HPRD:01510	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	protein-coding
19-PTNLD28-TUMOR_peak_30395	chr14	54970350	54970598	+	13.94772	NA	Intergenic	MER20|DNA|hAT-Charlie	-6113	NM_006568	10668	Hs.59106	NM_006568	HPRD:09366	CGRRF1	CGR19|RNF197	cell growth regulator with ring finger domain 1	protein-coding
19-PTNLD28-TUMOR_peak_101081	chr8	133663820	133663930	+	13.94772	NA	intron (NM_012472, intron 3 of 11)	intron (NM_012472, intron 3 of 11)	23988	NR_073525	23639	Hs.591865	NM_012472	HPRD:10286	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
19-PTNLD28-TUMOR_peak_28629	chr13	84326360	84326541	+	13.94772	NA	Intergenic	L3|LINE|CR1	130078	NM_001281503	114798	Hs.415478	NM_052910	HPRD:18063	SLITRK1	LRRC12|TTM	SLIT and NTRK-like family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_2500	chr1	37900040	37900159	+	13.94772	NA	Intergenic	Intergenic	39945	NR_038842	728431	Hs.380738	NR_038842	ENSG00000233621	LINC01137	-	long intergenic non-protein coding RNA 1137	ncRNA
19-PTNLD28-TUMOR_peak_38204	chr16	66062823	66063020	+	13.94772	NA	Intergenic	Intergenic	-337604	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_17385	chr11	15056951	15057116	+	13.94772	NA	Intergenic	MER52C|LTR|ERV1	-38113	NM_000728	797	Hs.534305	NM_000728	HPRD:11742	CALCB	CALC2|CGRP-II|CGRP2	calcitonin-related polypeptide beta	protein-coding
19-PTNLD28-TUMOR_peak_39209	chr16	85645905	85646111	+	13.94647	NA	promoter-TSS (NM_014615)	promoter-TSS (NM_014615)	-834	NM_014615	23199	Hs.461647	NM_014615	HPRD:11066	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_42197	chr17	48171767	48171897	+	13.94607	NA	promoter-TSS (NM_002611)	promoter-TSS (NM_002611)	-269	NM_001199898	5164	Hs.256667	NM_002611	HPRD:03955	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase, isozyme 2	protein-coding
19-PTNLD28-TUMOR_peak_60363	chr20	29523894	29524243	+	13.94547	NA	Intergenic	Intergenic	-87811	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_94153	chr7	98246420	98246991	+	13.94547	NA	5' UTR (NM_002523, exon 1 of 5)	5' UTR (NM_002523, exon 1 of 5)	108	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_32873	chr15	31619187	31619582	+	13.93629	NA	5' UTR (NM_015995, exon 1 of 2)	5' UTR (NM_015995, exon 1 of 2)	301	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_90588	chr6	168716423	168716576	+	13.93379	NA	intron (NM_001286351, intron 1 of 5)	intron (NM_001286351, intron 1 of 5)	3935	NM_001286351	168002	Hs.673059	NM_214462	HPRD:12345	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled-binding antagonist of beta-catenin 2	protein-coding
19-PTNLD28-TUMOR_peak_34770	chr15	80471421	80471674	+	13.93125	NA	intron (NM_000137, intron 11 of 13)	L1ME3A|LINE|L1	26314	NM_000137	2184	Hs.73875	NM_000137	HPRD:02040	FAH	-	fumarylacetoacetate hydrolase (fumarylacetoacetase)	protein-coding
19-PTNLD28-TUMOR_peak_108383	chrX	53253185	53253314	+	13.93125	NA	intron (NM_001282622, intron 1 of 25)	intron (NM_001282622, intron 1 of 25)	1355	NM_001282622	8242	Hs.631768	NM_004187	HPRD:02442	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine (K)-specific demethylase 5C	protein-coding
19-PTNLD28-TUMOR_peak_92650	chr7	55464004	55464363	+	13.93125	NA	intron (NM_018697, intron 2 of 8)	L1MCa|LINE|L1	31042	NM_018697	55915	Hs.595384	NM_018697	HPRD:13956	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
19-PTNLD28-TUMOR_peak_64350	chr22	19679706	19679853	+	13.93125	NA	Intergenic	Intergenic	-22208	NM_002688	5413	Hs.728762	NM_002688	HPRD:04100	SEPT5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1	septin 5	protein-coding
19-PTNLD28-TUMOR_peak_27192	chr12	131260774	131260976	+	13.93125	NA	Intergenic	Intergenic	62944	NM_194356	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_89975	chr6	150611633	150611801	+	13.93125	NA	Intergenic	Intergenic	-78311	NM_203395	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_58776	chr2	231549582	231549731	+	13.93125	NA	Intergenic	L2b|LINE|L2	15588	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	ncRNA
19-PTNLD28-TUMOR_peak_24995	chr12	64997101	64997411	+	13.93125	NA	Intergenic	Intergenic	-7037	NR_040718	283349	Hs.643605	NM_178169	HPRD:08448	RASSF3	RASSF5	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_51327	chr2	16831788	16832112	+	13.93125	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	15184	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_58851	chr2	232632888	232633205	+	13.93125	NA	intron (NM_001291018, intron 1 of 3)	intron (NM_001291018, intron 1 of 3)	12991	NM_002601	5147	Hs.516808	NM_002601	HPRD:04056	PDE6D	JBTS22|PDED	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding
19-PTNLD28-TUMOR_peak_44584	chr18	11393617	11393863	+	13.93125	NA	Intergenic	L1PBa1|LINE|L1	-94829	NR_110779	101927433	Hs.331210	NR_110778	ENSG00000267252	LINC01255	-	long intergenic non-protein coding RNA 1255	ncRNA
19-PTNLD28-TUMOR_peak_54276	chr2	96917508	96917821	+	13.93125	NA	3' UTR (NM_001193304, exon 4 of 4)	3' UTR (NM_001193304, exon 4 of 4)	14087	NM_017849	55654	Hs.164303	NM_017849		TMEM127	-	transmembrane protein 127	protein-coding
19-PTNLD28-TUMOR_peak_99338	chr8	81960178	81960411	+	13.92903	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	64009	NM_018440	55824	Hs.266175	NM_018440	HPRD:05772	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
19-PTNLD28-TUMOR_peak_43047	chr17	65318268	65318507	+	13.92903	NA	Intergenic	LTR9|LTR|ERV1	44334	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding
19-PTNLD28-TUMOR_peak_94593	chr7	103047387	103047568	+	13.92903	NA	intron (NR_120443, intron 7 of 14)	MER119|DNA|hAT-Charlie	36181	NR_120443	375611	Hs.585146	NM_198999	HPRD:09224	SLC26A5	DFNB61|PRES	solute carrier family 26 (anion exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_103998	chr9	80073035	80073163	+	13.92903	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	10534	NR_121184	101927422	Hs.434324	NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90120	chr6	153471876	153472467	+	13.92903	NA	Intergenic	HERVL18-int|LTR|ERVL	-19782	NM_012419	26575	Hs.166313	NM_012419	HPRD:06223	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
19-PTNLD28-TUMOR_peak_92979	chr7	67161982	67162133	+	13.92903	NA	Intergenic	L1M6|LINE|L1	-323183	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_54646	chr2	105757776	105757944	+	13.92903	NA	Intergenic	Intergenic	-38458	NR_110227	101927492	Hs.469537	NR_110227		LOC101927492	-	uncharacterized LOC101927492	ncRNA
19-PTNLD28-TUMOR_peak_5492	chr1	111038743	111038852	+	13.92903	NA	Intergenic	Intergenic	-5917	NR_108042	440602	Hs.708945	NR_108042	ENSG00000235407	LOC440602	-	uncharacterized LOC440602	ncRNA
19-PTNLD28-TUMOR_peak_40337	chr17	16472261	16472652	+	13.92903	NA	promoter-TSS (NM_020653)	promoter-TSS (NM_020653)	64	NM_020653	57336	Hs.99724	NM_020653		ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
19-PTNLD28-TUMOR_peak_26895	chr12	123570395	123570518	+	13.92903	NA	intron (NM_001300801, intron 1 of 24)	intron (NM_001300801, intron 1 of 24)	4525	NR_038290	100507091	Hs.683912	NR_038290	ENSG00000251497	LOC100507091	-	uncharacterized LOC100507091	ncRNA
19-PTNLD28-TUMOR_peak_84666	chr6	692442	692784	+	13.92896	NA	intron (NR_073064, intron 1 of 29)	CpG	528	NR_073064	55770	Hs.484412	NM_018303	HPRD:11544	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
19-PTNLD28-TUMOR_peak_96265	chr7	149983314	149983476	+	13.92896	NA	intron (NM_001164458, intron 5 of 7)	intron (NM_001164458, intron 5 of 7)	16674	NM_001164459	653857	Hs.664579	NM_001164458	ENSG00000106526	ACTR3C	ARP11	ARP3 actin-related protein 3 homolog C (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_38644	chr16	72047272	72047478	+	13.92768	NA	intron (NM_001361, intron 2 of 8)	intron (NM_001361, intron 2 of 8)	4732	NM_001361	1723	Hs.654427	NM_001361	HPRD:00521	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
19-PTNLD28-TUMOR_peak_26650	chr12	120703684	120703922	+	13.92768	NA	promoter-TSS (NM_001080855)	promoter-TSS (NM_001080855)	-229	NM_001243756	5829	Hs.446336	NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
19-PTNLD28-TUMOR_peak_7170	chr1	155145144	155145557	+	13.92748	NA	promoter-TSS (NM_001256599)	promoter-TSS (NM_001256599)	454	NM_173852	200185	Hs.516671	NM_173852	HPRD:17253	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_68017	chr3	48157471	48157813	+	13.92655	NA	Intergenic	LTR10D|LTR|ERV1	-26873	NM_001134364	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_88985	chr6	107435369	107435829	+	13.92655	NA	promoter-TSS (NM_001080450)	promoter-TSS (NM_001080450)	37	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_5799	chr1	116851784	116851925	+	13.92655	NA	Intergenic	Intergenic	-63941	NM_000701	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_91636	chr7	23720396	23720631	+	13.92655	NA	intron (NM_001300932, intron 1 of 5)	CpG	780	NM_001300932	340277	Hs.592178	NM_199136	HPRD:14706	FAM221A	C7orf46	family with sequence similarity 221, member A	protein-coding
19-PTNLD28-TUMOR_peak_40878	chr17	28256498	28256994	+	13.92655	NA	promoter-TSS (NM_001145053)	promoter-TSS (NM_001145053)	-128	NM_001145053	374786	Hs.662411	NM_198529	HPRD:13528	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_42578	chr17	56392846	56393126	+	13.92655	NA	intron (NM_001261835, intron 16 of 31)	intron (NM_001261835, intron 16 of 31)	-9825	NR_038410	100506779	Hs.718477	NR_038410	ENSG00000265148	BZRAP1-AS1	-	BZRAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95403	chr7	131765936	131766085	+	13.92655	NA	Intergenic	Intergenic	171031	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_36576	chr16	18495357	18495495	+	13.92619	NA	TTS (NR_036142)	TTS (NR_036142)	698	NR_036142	100422956		NR_036142	miRBase:MI0014215	MIR3180-2	-	microRNA 3180-2	ncRNA
19-PTNLD28-TUMOR_peak_78566	chr5	219262	219400	+	13.92135	NA	intron (NM_004168, intron 1 of 14)	intron (NM_004168, intron 1 of 14)	993	NM_001294332	6389	Hs.440475	NM_004168	HPRD:02914	SDHA	CMD1GG|FP|PGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding
19-PTNLD28-TUMOR_peak_37286	chr16	30907360	30907933	+	13.92135	NA	promoter-TSS (NM_001330)	promoter-TSS (NM_001330)	-282	NM_001142544	1489	Hs.483811	NM_001330	HPRD:02699	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
19-PTNLD28-TUMOR_peak_60078	chr20	19738137	19738325	+	13.91959	NA	Intergenic	CpG	-128934	NM_001242581	54453	Hs.472270	NM_018993	HPRD:15249	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
19-PTNLD28-TUMOR_peak_61005	chr20	37737535	37737687	+	13.91800	NA	Intergenic	MIRc|SINE|MIR	115780	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_73012	chr3	187289546	187289966	+	13.91800	NA	Intergenic	Intergenic	98445	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_86823	chr6	33282272	33282563	+	13.91613	NA	promoter-TSS (NM_003190).3	promoter-TSS (NM_003190).3	-253	NM_172208	6892	Hs.370937	NM_003190	HPRD:09061	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein (tapasin)	protein-coding
19-PTNLD28-TUMOR_peak_18891	chr11	61467473	61467636	+	13.91613	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	19649	NM_006133	747	Hs.241564	NM_006133	HPRD:07092	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase, alpha	protein-coding
19-PTNLD28-TUMOR_peak_7045	chr1	154166380	154166528	+	13.91574	NA	promoter-TSS (NR_030600)	promoter-TSS (NR_030600)	-235	NR_030600	100126346		NR_030600	miRBase:MI0005545	MIR190B	MIRN190B	microRNA 190b	ncRNA
19-PTNLD28-TUMOR_peak_55907	chr2	135413542	135413750	+	13.91574	NA	intron (NM_030923, intron 2 of 7)	L1PA2|LINE|L1	62925	NM_030923	81615	Hs.369471	NM_030923	HPRD:13178	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
19-PTNLD28-TUMOR_peak_86561	chr6	31025263	31025547	+	13.91574	NA	intron (NR_003948, intron 3 of 3).5	LTR42|LTR|ERVL	4178	NR_003948	285834	Hs.207528	NR_003948	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22	ncRNA
19-PTNLD28-TUMOR_peak_47954	chr19	17903348	17903593	+	13.91232	NA	Intergenic	L1MB5|LINE|L1	-2449	NM_014256	10331	Hs.69009	NM_014256	HPRD:10431	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_67877	chr3	45677281	45677759	+	13.90747	NA	intron (NM_014240, intron 1 of 7)	intron (NM_014240, intron 1 of 7)	41197	NM_014240	8994	Hs.193370	NM_014240		LIMD1	-	LIM domains containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49601	chr19	47910362	47910685	+	13.90747	NA	intron (NM_001301059, intron 9 of 12)	CpG-14034	12262	NM_001301059	56917	Hs.380923	NM_020160	HPRD:14386	MEIS3	MRG2	Meis homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_29135	chr13	113548638	113548762	+	13.90747	NA	Intergenic	CpG	74252	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57758	chr2	201549267	201549384	+	13.90747	NA	Intergenic	SVA_E|Other|Other	-11121	NR_001557	344454	Hs.148269	NR_001557		AOX2P	AOH2|AOX2	aldehyde oxidase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_92376	chr7	46208328	46208441	+	13.90747	NA	Intergenic	Intergenic	-247513	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_3315	chr1	47915694	47915849	+	13.90747	NA	Intergenic	CpG	14082	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_55424	chr2	121948844	121949007	+	13.90747	NA	Intergenic	Intergenic	93853	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_89558	chr6	135224692	135224973	+	13.90747	NA	Intergenic	Intergenic	46428	NM_170771	64577	Hs.486520	NM_022568	HPRD:06974	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_70474	chr3	125994017	125994300	+	13.90747	NA	Intergenic	Intergenic	82078	NM_014079	28999	Hs.272215	NM_014079	HPRD:07568	KLF15	KKLF	Kruppel-like factor 15	protein-coding
19-PTNLD28-TUMOR_peak_104140	chr9	85372213	85372348	+	13.90747	NA	Intergenic	L1PA3|LINE|L1	305763	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_38255	chr16	66785423	66785842	+	13.90747	NA	promoter-TSS (NM_006141)	promoter-TSS (NM_006141)	-107	NM_001286157	1783	Hs.369068	NM_006141	HPRD:09923	DYNC1LI2	DNCLI2|LIC2	dynein, cytoplasmic 1, light intermediate chain 2	protein-coding
19-PTNLD28-TUMOR_peak_14212	chr10	73235043	73235205	+	13.90619	NA	intron (NM_001171930, intron 3 of 30)	intron (NM_001171930, intron 3 of 30)	36553	NR_120672	102723377	Hs.568789	NR_120672		LOC102723377	-	uncharacterized LOC102723377	ncRNA
19-PTNLD28-TUMOR_peak_66730	chr3	13343066	13343242	+	13.90619	NA	Intergenic	Intergenic	118665	NM_024923	23225	Hs.475525	NM_024923	HPRD:06368	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
19-PTNLD28-TUMOR_peak_86235	chr6	27487212	27487406	+	13.90619	NA	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-46412	NM_007149	7738	Hs.158174	NM_007149	HPRD:03785	ZNF184	-	zinc finger protein 184	protein-coding
19-PTNLD28-TUMOR_peak_17316	chr11	13360817	13360986	+	13.90619	NA	intron (NM_001178, intron 3 of 19)	L2a|LINE|L2	61627	NM_001297722	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_102116	chr9	6632682	6632885	+	13.90619	NA	intron (NM_000170, intron 2 of 24)	intron (NM_000170, intron 2 of 24)	12909	NM_000170	2731	Hs.584238	NM_000170	HPRD:01996	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
19-PTNLD28-TUMOR_peak_61080	chr20	39247862	39248247	+	13.90619	NA	Intergenic	L1PA3|LINE|L1	69826	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_47015	chr19	8009146	8009421	+	13.90586	NA	promoter-TSS (NM_006351)	promoter-TSS (NM_006351)	-575	NM_006351	10469	Hs.465784	NM_006351	HPRD:05450	TIMM44	TIM44	translocase of inner mitochondrial membrane 44 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_95751	chr7	139115740	139116035	+	13.90323	NA	Intergenic	L1ME2|LINE|L1	-3615	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
19-PTNLD28-TUMOR_peak_49473	chr19	46704753	46704898	+	13.90323	NA	Intergenic	L2b|LINE|L2	-8674	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
19-PTNLD28-TUMOR_peak_39178	chr16	85406482	85406664	+	13.89854	NA	Intergenic	Intergenic	-66642	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_95835	chr7	140225556	140225873	+	13.89679	NA	intron (NM_015689, intron 13 of 17)	intron (NM_015689, intron 13 of 17)	-46345	NM_001291663	23608	Hs.744883	NM_013446	HPRD:09673	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_86416	chr6	29910557	29910711	+	13.89653	NA	exon (NM_001242758, exon 2 of 8)	exon (NM_001242758, exon 2 of 8)	387	NM_002116	3105	Hs.181244	NM_002116	HPRD:00826	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
19-PTNLD28-TUMOR_peak_82152	chr5	132447018	132447176	+	13.89368	NA	Intergenic	Intergenic	59435	NM_002154	3308	Hs.90093	NM_002154		HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock 70kDa protein 4	protein-coding
19-PTNLD28-TUMOR_peak_54204	chr2	95858761	95858900	+	13.89107	NA	Intergenic	LTR13|LTR|ERVK	27668	NM_001017396	7549	Hs.590916	NM_021088	HPRD:11834	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_13249	chr10	44503837	44504002	+	13.89107	NA	Intergenic	Intergenic	99167	NR_033846	283033	Hs.730228	NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
19-PTNLD28-TUMOR_peak_56499	chr2	159135137	159135253	+	13.89107	NA	intron (NM_138803, intron 9 of 13)	L1PA3|LINE|L1	112033	NR_038850	554201	Hs.570262	NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33842	chr15	61205513	61205760	+	13.89107	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	231868	NR_120318	100996876	Hs.511626	NR_120318		LOC100996876	-	uncharacterized LOC100996876	ncRNA
19-PTNLD28-TUMOR_peak_77477	chr4	148024824	148024992	+	13.89107	NA	Intergenic	Intergenic	-157874	NM_031956	83894	Hs.378893	NM_031956	HPRD:14866	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
19-PTNLD28-TUMOR_peak_22846	chr12	7150240	7150419	+	13.89107	NA	Intergenic	L1MC3|LINE|L1	-17651	NM_001734	716	Hs.458355	NM_001734	HPRD:00397	C1S	-	complement component 1, s subcomponent	protein-coding
19-PTNLD28-TUMOR_peak_74561	chr4	13629163	13629566	+	13.89107	NA	promoter-TSS (NR_049814)	promoter-TSS (NR_049814)	-36	NM_148894	259282	Hs.744935	NM_148894	HPRD:08156	BOD1L1	BOD1L|FAM44A	biorientation of chromosomes in cell division 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_24216	chr12	51146247	51146463	+	13.89107	NA	Intergenic	Intergenic	-11434	NM_005171	466	Hs.648565	NM_005171	HPRD:00440	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_56329	chr2	152653396	152653569	+	13.89107	NA	Intergenic	Intergenic	31527	NM_177985	26225	Hs.470233	NM_012097		ARL5A	ARFLP5|ARL5	ADP-ribosylation factor-like 5A	protein-coding
19-PTNLD28-TUMOR_peak_103815	chr9	74754311	74754460	+	13.89107	NA	intron (NM_001242507, intron 1 of 13)	intron (NM_001242507, intron 1 of 13)	-9882	NM_001242506	9615	Hs.494163	NM_004293	HPRD:08849	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_88369	chr6	75288025	75288183	+	13.89107	NA	intron (NR_110856, intron 2 of 3)	intron (NR_110856, intron 2 of 3)	508937	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_35100	chr15	89010573	89010937	+	13.89107	NA	promoter-TSS (NM_176805)	promoter-TSS (NM_176805)	71	NM_176805	64963	Hs.111286	NM_022839	HPRD:14776	MRPS11	HCC-2	mitochondrial ribosomal protein S11	protein-coding
19-PTNLD28-TUMOR_peak_34678	chr15	78251853	78252124	+	13.89107	NA	Intergenic	Intergenic	-32800	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_79374	chr5	32936446	32936769	+	13.89107	NA	Intergenic	L2b|LINE|L2	-10942	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
19-PTNLD28-TUMOR_peak_13712	chr10	58382196	58382532	+	13.89107	NA	Intergenic	Intergenic	-261330	NM_032997	11130	Hs.591363	NM_007057	HPRD:18366	ZWINT	HZwint-1|KNTC2AP|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
19-PTNLD28-TUMOR_peak_11848	chr10	6013319	6013489	+	13.89107	NA	intron (NM_001256765, intron 1 of 7)	intron (NM_001256765, intron 1 of 7)	6170	NM_002189	3601	Hs.445124	NM_002189	HPRD:03045	IL15RA	CD215	interleukin 15 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_60141	chr20	21596318	21596425	+	13.89107	NA	TTS (NR_109880)	TTS (NR_109880)	45709	NR_109880	101929625	Hs.542413	NR_109880		LOC101929625	-	uncharacterized LOC101929625	ncRNA
19-PTNLD28-TUMOR_peak_5104	chr1	98047085	98047293	+	13.89107	NA	intron (NM_000110, intron 10 of 22)	AluJr|SINE|Alu	-215288	NR_046591	100873933	Hs.568669	NR_046591		DPYD-AS2	-	DPYD antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_8192	chr1	172224157	172224308	+	13.89107	NA	intron (NM_001136127, intron 15 of 19)	intron (NM_001136127, intron 15 of 19)	-110257	NR_103486	100628315	Hs.584880	NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_12575	chr10	27625782	27625976	+	13.89107	NA	Intergenic	Intergenic	77418	NM_001034842	374308	Hs.631832	NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_57618	chr2	197139136	197139391	+	13.89107	NA	intron (NM_020760, intron 15 of 28)	intron (NM_020760, intron 15 of 28)	14515	NR_110226	101927482	Hs.191841	NR_110225	ENSG00000229056	LOC101927482	-	uncharacterized LOC101927482	ncRNA
19-PTNLD28-TUMOR_peak_76620	chr4	112073762	112073895	+	13.89107	NA	Intergenic	L1PA3|LINE|L1	-510549	NM_001204399	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_94616	chr7	103878373	103878623	+	13.89107	NA	Intergenic	Intergenic	-30003	NM_002553	5001	Hs.432948	NM_002553	HPRD:09086	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex, subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_99847	chr8	103299667	103299795	+	13.89107	NA	exon (NM_001282873, exon 37 of 59)	exon (NM_001282873, exon 37 of 59)	48052	NR_125415	101927221	Hs.492445	NR_125415		LOC101927221	-	uncharacterized LOC101927221	ncRNA
19-PTNLD28-TUMOR_peak_88125	chr6	56650036	56650160	+	13.89107	NA	intron (NM_001144769, intron 4 of 96)	L1PA3|LINE|L1	-34960	NR_046940	100873774		NR_046940	ENSG00000207203	RNU6-71P	RNU6-71	RNA, U6 small nuclear 71, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_98690	chr8	49782727	49783014	+	13.89107	NA	Intergenic	CpG	51129	NM_003068	6591	Hs.360174	NM_003068	HPRD:03689	SNAI2	SLUG|SLUGH1|SNAIL2|WS2D	snail family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_95282	chr7	129997009	129997186	+	13.88502	NA	intron (NM_001127441, intron 6 of 13)	intron (NM_001127441, intron 6 of 13)	12467	NM_080385	93979	Hs.567642	NM_080385	HPRD:07097	CPA5	-	carboxypeptidase A5	protein-coding
19-PTNLD28-TUMOR_peak_2961	chr1	43539376	43539533	+	13.88172	NA	Intergenic	Intergenic	-74140	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	family with sequence similarity 183, member A	protein-coding
19-PTNLD28-TUMOR_peak_61761	chr20	48737516	48737665	+	13.88172	NA	intron (NM_199203, intron 5 of 7)	intron (NM_199203, intron 5 of 7)	-5094	NM_001257393	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
19-PTNLD28-TUMOR_peak_53432	chr2	72108008	72108183	+	13.88172	NA	Intergenic	Intergenic	266896	NM_001277742	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_91058	chr7	5229619	5230056	+	13.87998	NA	promoter-TSS (NM_001278299)	promoter-TSS (NM_001278299)	2	NM_001278299	26100	Hs.122363	NM_015610	HPRD:15679	WIPI2	ATG18B|Atg21|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
19-PTNLD28-TUMOR_peak_87488	chr6	42120690	42120833	+	13.87998	NA	Intergenic	Intergenic	-2383	NM_000409	2978	Hs.92858	NM_000409	HPRD:02648	GUCA1A	C6orf131|COD3|CORD14|GCAP|GCAP1|GUCA|GUCA1|dJ139D8.6	guanylate cyclase activator 1A (retina)	protein-coding
19-PTNLD28-TUMOR_peak_60948	chr20	36849477	36849726	+	13.87998	NA	intron (NM_001029864, intron 10 of 13)	intron (NM_001029864, intron 10 of 13)	-38976	NR_104170	149684	Hs.628250	NR_104170	ENSG00000101425	LOC149684	-	uncharacterized LOC149684	ncRNA
19-PTNLD28-TUMOR_peak_56383	chr2	153777519	153777663	+	13.87998	NA	Intergenic	Intergenic	203184	NR_024526	151188	Hs.643580	NM_152522	HPRD:12485	ARL6IP6	AIP-6|PFAAP1	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
19-PTNLD28-TUMOR_peak_55744	chr2	131936722	131936852	+	13.87459	NA	Intergenic	Intergenic	-39137	NM_001083538	445582	Hs.686146	NM_001004054	HPRD:12329	POTEE	A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma	POTE ankyrin domain family, member E	protein-coding
19-PTNLD28-TUMOR_peak_17211	chr11	12141600	12142007	+	13.87459	NA	intron (NM_001282668, intron 1 of 4)	intron (NM_001282668, intron 1 of 4)	9680	NM_001282668	9645	Hs.501928	NM_014632	HPRD:10085	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46493	chr19	535288	535427	+	13.87459	NA	intron (NM_004359, intron 1 of 4)	intron (NM_004359, intron 1 of 4)	3624	NM_004359	997	Hs.514997	NM_004359	HPRD:00306	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34	protein-coding
19-PTNLD28-TUMOR_peak_78553	chr5	91138	91400	+	13.87225	NA	Intergenic	Intergenic	-49104	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 4B	protein-coding
19-PTNLD28-TUMOR_peak_5558	chr1	112421738	112422013	+	13.87225	NA	intron (NM_172198, intron 2 of 6)	MLT2B4|LTR|ERVL	-22348	NR_046783	100874295	Hs.738190	NR_046783		KCND3-IT1	-	KCND3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_85148	chr6	7262288	7262498	+	13.87183	NA	Intergenic	Intergenic	51154	NM_001292008	6745	Hs.114033	NM_003144	HPRD:02924	SSR1	TRAPA	signal sequence receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_21200	chr11	112426557	112426671	+	13.87136	NA	promoter-TSS (NR_104155)	promoter-TSS (NR_104155)	-89	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_108641	chrX	68723696	68723994	+	13.87136	NA	Intergenic	CpG	-1233	NM_015686	27112	Hs.87619	NM_015686	HPRD:06740	FAM155B	CXorf63|TED|TMEM28|bB57D9.1	family with sequence similarity 155, member B	protein-coding
19-PTNLD28-TUMOR_peak_1230	chr1	19884722	19885081	+	13.87136	NA	Intergenic	AluSq|SINE|Alu	-38570	NM_001032363	440574	Hs.466662	NM_001032363	ENSG00000173436	MINOS1	C1orf151|MIO10	mitochondrial inner membrane organizing system 1	protein-coding
19-PTNLD28-TUMOR_peak_43013	chr17	64563465	64563617	+	13.87136	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-150569	NR_110822	101928001	Hs.650730	NR_110822	ENSG00000264630	LOC101928001	-	uncharacterized LOC101928001	ncRNA
19-PTNLD28-TUMOR_peak_58405	chr2	219137568	219137790	+	13.86961	NA	TTS (NM_001077399)	TTS (NM_001077399)	2564	NM_001077399	25953	Hs.98475	NM_015488	HPRD:11369	PNKD	BRP17|DYT8|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2	paroxysmal nonkinesigenic dyskinesia	protein-coding
19-PTNLD28-TUMOR_peak_36240	chr16	10673892	10674135	+	13.86961	NA	intron (NM_001424, intron 1 of 4)	CpG	526	NM_001424	2013	Hs.531561	NM_001424	HPRD:11893	EMP2	NPHS10|XMP	epithelial membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_43932	chr17	79014140	79014558	+	13.86628	NA	intron (NM_006340, intron 1 of 14)	L2a|LINE|L2	5402	NM_006340	10458	Hs.128316	NM_006340	HPRD:05686	BAIAP2	BAP2|FLAF3|IRSP53	BAI1-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_90980	chr7	3284112	3284313	+	13.86146	NA	Intergenic	Intergenic	-56868	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_63098	chr21	31525147	31525486	+	13.86146	NA	Intergenic	L2a|LINE|L2	13655	NM_012131	26285	Hs.258589	NM_012131	HPRD:10833	CLDN17	-	claudin 17	protein-coding
19-PTNLD28-TUMOR_peak_83600	chr5	159458073	159458419	+	13.86146	NA	intron (NM_003314, intron 2 of 7)	intron (NM_003314, intron 2 of 7)	22139	NM_003314	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_41627	chr17	41535304	41535631	+	13.86146	NA	Intergenic	Intergenic	13293	NR_031751	100313779		NR_031751	miRBase:MI0010636	MIR2117	-	microRNA 2117	ncRNA
19-PTNLD28-TUMOR_peak_72871	chr3	185451817	185451979	+	13.86146	NA	intron (NM_001007225, intron 2 of 14)	intron (NM_001007225, intron 2 of 14)	20858	NR_027317	646600	Hs.647949	NR_027317	ENSG00000163915	C3orf65	-	chromosome 3 open reading frame 65	ncRNA
19-PTNLD28-TUMOR_peak_33601	chr15	52521230	52521399	+	13.86146	NA	intron (NM_018728, intron 25 of 40)	intron (NM_018728, intron 25 of 40)	-37749	NM_016194	10681	Hs.155090	NM_006578	HPRD:09191	GNB5	GB5	guanine nucleotide binding protein (G protein), beta 5	protein-coding
19-PTNLD28-TUMOR_peak_61622	chr20	47342279	47342560	+	13.86146	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	102001	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_71037	chr3	135158418	135158705	+	13.86146	NA	Intergenic	L1P1|LINE|L1	-525954	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_4995	chr1	94596512	94596750	+	13.86146	NA	Intergenic	Intergenic	-9926	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_46452	chr18	77954469	77954744	+	13.86146	NA	intron (NM_032510, intron 2 of 2)	intron (NM_032510, intron 2 of 2)	48799	NR_028340	100130522	Hs.352602	NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2302	chr1	35161914	35162098	+	13.86146	NA	Intergenic	L2a|LINE|L2	-58642	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_49313	chr19	45091784	45092020	+	13.86146	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25038	NM_001205280	147710	Hs.512509	NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily, member 23	protein-coding
19-PTNLD28-TUMOR_peak_85322	chr6	11167270	11167460	+	13.86146	NA	Intergenic	Intergenic	-55294	NM_207582	405754	Hs.631996	NM_207582	HPRD:13648	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD, member 1	protein-coding
19-PTNLD28-TUMOR_peak_74868	chr4	26807996	26808282	+	13.86146	NA	Intergenic	Intergenic	-54174	NM_001169117	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_108064	chrX	43365094	43365296	+	13.86146	NA	Intergenic	LTR16E2|LTR|ERVL	-148960	NM_000240	4128	Hs.183109	NM_000240		MAOA	MAO-A	monoamine oxidase A	protein-coding
19-PTNLD28-TUMOR_peak_37282	chr16	30856128	30856319	+	13.86146	NA	intron (NM_001286526, intron 5 of 5)	LTR41B|LTR|ERVL	30421	NR_039744	100616231		NR_039744		MIR4519	-	microRNA 4519	ncRNA
19-PTNLD28-TUMOR_peak_110055	chrX	154842560	154842699	+	13.85877	NA	promoter-TSS (NM_018196)	promoter-TSS (NM_018196)	-7	NM_001184797	55217	Hs.133321	NM_018196	HPRD:06743	TMLHE	AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130	trimethyllysine hydroxylase, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_48639	chr19	35554963	35555085	+	13.85877	NA	intron (NM_182983, intron 9 of 12)	MIRb|SINE|MIR	23614	NM_182983	3249	Hs.182385	NM_002151	HPRD:00801	HPN	TMPRSS1	hepsin	protein-coding
19-PTNLD28-TUMOR_peak_108350	chrX	51812202	51812335	+	13.85877	NA	promoter-TSS (NM_001272061)	promoter-TSS (NM_001272061)	100	NM_177537	81557	Hs.522650	NM_030801	HPRD:06631	MAGED4B	-	melanoma antigen family D, 4B	protein-coding
19-PTNLD28-TUMOR_peak_70452	chr3	125691351	125691483	+	13.85872	NA	intron (NM_001012337, intron 2 of 5)	intron (NM_001012337, intron 2 of 5)	3389	NM_001012337	152015	Hs.663128	NM_001012337	HPRD:17985	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_70704	chr3	129117763	129117924	+	13.85872	NA	intron (NR_003111, intron 1 of 3)	intron (NR_003111, intron 1 of 3)	439	NR_003111	132241	Hs.477537	NR_003111	ENSG00000251474	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_22980	chr12	9436914	9437145	+	13.85235	NA	intron (NR_024374, intron 1 of 21)	intron (NR_024374, intron 1 of 21)	776	NR_024374	642846	Hs.447869	NR_024374	ENSG00000111788	LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
19-PTNLD28-TUMOR_peak_58035	chr2	207449116	207449421	+	13.85235	NA	intron (NM_003812, intron 18 of 25)	L1PB1|LINE|L1	-57874	NM_001102659	200726	Hs.144769	NM_001102659		LOC200726	-	hCG1657980	protein-coding
19-PTNLD28-TUMOR_peak_45248	chr18	34161170	34161355	+	13.85235	NA	intron (NM_001281739, intron 6 of 23)	intron (NM_001281739, intron 6 of 23)	-247818	NM_020776	57536	Hs.4045	NM_020776	HPRD:17211	KIAA1328	-	KIAA1328	protein-coding
19-PTNLD28-TUMOR_peak_97947	chr8	29083316	29083719	+	13.85235	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	37093	NM_015254	23303	Hs.444767	NM_015254	HPRD:09556	KIF13B	GAKIN	kinesin family member 13B	protein-coding
19-PTNLD28-TUMOR_peak_42001	chr17	45995015	45995164	+	13.85235	NA	intron (NM_003110, intron 3 of 6)	AluJr|SINE|Alu	21573	NM_003110	6668	Hs.514276	NM_003110	HPRD:03481	SP2	-	Sp2 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_32514	chr15	22094908	22095494	+	13.84237	NA	Intergenic	CpG	-12060	NM_207355	102724631	Hs.722659	NM_207355		LOC102724631	POTE-15|POTEB	POTE ankyrin domain family, member B-like	protein-coding
19-PTNLD28-TUMOR_peak_16959	chr11	8285437	8285576	+	13.84237	NA	promoter-TSS (NR_073006)	promoter-TSS (NR_073006)	-81	NM_002315	4004	Hs.654426	NM_002315	HPRD:01738	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
19-PTNLD28-TUMOR_peak_83966	chr5	171961287	171961503	+	13.84237	NA	Intergenic	L2c|LINE|L2	-79868	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_20074	chr11	75182527	75182877	+	13.84171	NA	intron (NM_030792, intron 3 of 16)	intron (NM_030792, intron 3 of 16)	-41028	NM_001039548	283212	Hs.292451	NM_173583	HPRD:08747	KLHL35	-	kelch-like family member 35	protein-coding
19-PTNLD28-TUMOR_peak_17252	chr11	12715308	12715631	+	13.84171	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	19500	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_42152	chr17	47786264	47786593	+	13.84078	NA	Intergenic	Intergenic	-1115	NM_005827	10237	Hs.154073	NM_005827	HPRD:10237	SLC35B1	UGTREL1	solute carrier family 35, member B1	protein-coding
19-PTNLD28-TUMOR_peak_29836	chr14	34551141	34551312	+	13.84078	NA	Intergenic	Intergenic	-130942	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_49646	chr19	48410734	48410908	+	13.84064	NA	promoter-TSS (NR_004437)	promoter-TSS (NR_004437)	-114	NR_004437	100126800	Hs.707967	NR_004437		SNAR-A12	SNAR-A53102747	small ILF3/NF90-associated RNA A12	snRNA
19-PTNLD28-TUMOR_peak_95756	chr7	139142418	139142624	+	13.83753	NA	intron (NM_198508, intron 3 of 4)	intron (NM_198508, intron 3 of 4)	25936	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	killer cell lectin-like receptor subfamily G, member 2	protein-coding
19-PTNLD28-TUMOR_peak_30538	chr14	58549321	58549605	+	13.83753	NA	intron (NM_001001872, intron 5 of 7)	intron (NM_001001872, intron 5 of 7)	69384	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
19-PTNLD28-TUMOR_peak_26545	chr12	118018859	118019177	+	13.83399	NA	intron (NM_173598, intron 6 of 19)	L2c|LINE|L2	-219411	NM_001204218	4842	Hs.654410	NM_000620	HPRD:01226	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_70221	chr3	123305116	123305262	+	13.83338	NA	intron (NR_121654, intron 2 of 3)	MER1B|DNA|hAT-Charlie	829	NR_121654	100506826	Hs.556600	NR_038266	ENSG00000239523	MYLK-AS1	-	MYLK antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103467	chr9	67029986	67030101	+	13.82631	NA	intron (NR_046175, intron 1 of 3)	intron (NR_046175, intron 1 of 3)	2029	NR_046175	286297	Hs.645503	NR_046175	ENSG00000182021	LOC286297	-	uncharacterized LOC286297	ncRNA
19-PTNLD28-TUMOR_peak_94217	chr7	99097859	99098039	+	13.82551	NA	promoter-TSS (NM_032164)	promoter-TSS (NM_032164)	-72	NM_032164	84124	Hs.386324	NM_032164	HPRD:18333	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
19-PTNLD28-TUMOR_peak_79910	chr5	54467984	54468177	+	13.82338	NA	TTS (NR_031572)	TTS (NR_031572)	101	NR_031572	100313923		NR_031572		MIR449C	-	microRNA 449c	ncRNA
19-PTNLD28-TUMOR_peak_77379	chr4	144257249	144257801	+	13.82338	NA	promoter-TSS (NM_002039)	promoter-TSS (NM_002039)	-458	NM_207123	2549	Hs.80720	NM_002039	HPRD:05116	GAB1	-	GRB2-associated binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_85662	chr6	16640023	16640176	+	13.82338	NA	intron (NM_001128164, intron 3 of 7)	intron (NM_001128164, intron 3 of 7)	121622	NM_001128164	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_25060	chr12	66330379	66330589	+	13.82338	NA	intron (NM_001300918, intron 3 of 4)	MIRb|SINE|MIR	-54537	NM_001292024	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
19-PTNLD28-TUMOR_peak_14137	chr10	72412966	72413303	+	13.82338	NA	Intergenic	Intergenic	-19425	NM_139155	140766	Hs.352156	NM_080722	HPRD:06329	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif, 14	protein-coding
19-PTNLD28-TUMOR_peak_8822	chr1	184355554	184355867	+	13.81455	NA	promoter-TSS (NM_030806)	promoter-TSS (NM_030806)	-440	NM_030806	81563	Hs.497159	NM_030806	HPRD:12721	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
19-PTNLD28-TUMOR_peak_79397	chr5	33436116	33436223	+	13.81455	NA	Intergenic	Intergenic	-4633	NM_001258437	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_42782	chr17	60781918	60782104	+	13.81455	NA	TTS (NM_001288780)	TTS (NM_001288780)	-16847	NR_036146	100422923		NR_036146		MIR548W	-	microRNA 548w	ncRNA
19-PTNLD28-TUMOR_peak_29068	chr13	111108303	111108642	+	13.81407	NA	intron (NM_001846, intron 20 of 47)	intron (NM_001846, intron 20 of 47)	52054	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39653	chr17	1835521	1835733	+	13.81407	NA	Intergenic	Intergenic	92551	NM_178568	146760	Hs.22917	NM_178568	HPRD:11523	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_70403	chr3	125159572	125159721	+	13.81407	NA	Intergenic	Intergenic	-65448	NM_021964	7707	Hs.592591	NM_021964	HPRD:03540	ZNF148	BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
19-PTNLD28-TUMOR_peak_108028	chrX	41162472	41162613	+	13.81407	NA	Intergenic	L3|LINE|CR1	-30109	NM_001356	1654	Hs.743263	NM_001356	HPRD:02154	DDX3X	DBX|DDX14|DDX3|HLP2	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_40434	chr17	17833413	17833540	+	13.81407	NA	intron (NM_001033551, intron 1 of 13)	intron (NM_001033551, intron 1 of 13)	42308	NM_001082968	146691	Hs.462379	NM_144678	HPRD:18213	TOM1L2	-	target of myb1-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_34336	chr15	71466851	71467014	+	13.81407	NA	intron (NR_120349, intron 1 of 1)	L1PA2|LINE|L1	14466	NR_120349	101929196	Hs.680472	NR_120348		LOC101929196	-	uncharacterized LOC101929196	ncRNA
19-PTNLD28-TUMOR_peak_25437	chr12	80377356	80377624	+	13.81407	NA	Intergenic	Intergenic	-48255	NM_001244990	4659	Hs.49582	NM_002480	HPRD:03606	PPP1R12A	M130|MBS|MYPT1	protein phosphatase 1, regulatory subunit 12A	protein-coding
19-PTNLD28-TUMOR_peak_36643	chr16	19657070	19657242	+	13.81407	NA	intron (NM_001300743, intron 21 of 27)	intron (NM_001300743, intron 21 of 27)	-70622	NM_153208	124152	Hs.460217	NM_153208	HPRD:11340	IQCK	-	IQ motif containing K	protein-coding
19-PTNLD28-TUMOR_peak_99994	chr8	106768339	106768441	+	13.81407	NA	intron (NM_012082, intron 5 of 7)	intron (NM_012082, intron 5 of 7)	304341	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103147	chr9	40823904	40824026	+	13.81407	NA	Intergenic	Intergenic	-31853	NM_033160	26149	Hs.522147	NM_033160	HPRD:11342	ZNF658	-	zinc finger protein 658	protein-coding
19-PTNLD28-TUMOR_peak_11096	chr1	235746850	235747227	+	13.81407	NA	intron (NM_001098721, intron 3 of 3)	intron (NM_001098721, intron 3 of 3)	66255	NM_001098722	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_3433	chr1	50646757	50647100	+	13.81407	NA	intron (NM_001294348, intron 3 of 6)	intron (NM_001294348, intron 3 of 6)	71640	NM_001294348	1996	Hs.213050	NM_021952	HPRD:01343	ELAVL4	HUD|PNEM	ELAV like neuron-specific RNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_81542	chr5	111558268	111558616	+	13.81407	NA	intron (NM_022140, intron 12 of 22)	intron (NM_022140, intron 12 of 22)	-5538	NR_110559	101927023	Hs.571002	NR_110559		LOC101927023	-	uncharacterized LOC101927023	ncRNA
19-PTNLD28-TUMOR_peak_15501	chr10	106319621	106320029	+	13.81407	NA	Intergenic	Intergenic	-79792	NR_120624	101927523	Hs.407539	NR_120624	ENSG00000225768	LOC101927523	-	uncharacterized LOC101927523	ncRNA
19-PTNLD28-TUMOR_peak_99367	chr8	85337255	85337425	+	13.81407	NA	intron (NM_001100392, intron 2 of 9)	L1PA2|LINE|L1	240240	NM_001100391	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_45579	chr18	45633305	45633628	+	13.81407	NA	intron (NM_001039360, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	30214	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_21632	chr11	120119372	120119630	+	13.81407	NA	TTS (NR_038829)	TTS (NR_038829)	8598	NM_014352	25833	Hs.227115	NM_014352	HPRD:09582	POU2F3	Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a	POU class 2 homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_69791	chr3	112046339	112046509	+	13.81407	NA	Intergenic	Intergenic	-5492	NM_001004196	4345	Hs.79015	NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
19-PTNLD28-TUMOR_peak_69042	chr3	72794655	72794807	+	13.81407	NA	Intergenic	Intergenic	102867	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_84601	chr5	180634067	180634867	+	13.81167	NA	Intergenic	Intergenic	-2174	NM_203293	81786	Hs.487412	NM_033342	HPRD:11648	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
19-PTNLD28-TUMOR_peak_61462	chr20	45399548	45399708	+	13.81159	NA	Intergenic	L2a|LINE|L2	61349	NM_030777	81031	Hs.305971	NM_030777	HPRD:05851	SLC2A10	ATS|GLUT10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_13817	chr10	62638128	62638296	+	13.81159	NA	intron (NR_024554, intron 8 of 11)	Mam_R4|LINE|Dong-R4	65821	NM_001242359	9886	Hs.737374	NM_014836	HPRD:06299	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32851	chr15	31358129	31358274	+	13.81159	NA	promoter-TSS (NR_029624)	promoter-TSS (NR_029624)	-857	NR_029624	406993		NR_029624		MIR211	MIRN211|mir-211	microRNA 211	ncRNA
19-PTNLD28-TUMOR_peak_10253	chr1	223070959	223071079	+	13.81159	NA	intron (NM_032890, intron 1 of 9)	intron (NM_032890, intron 1 of 9)	82588	NM_032890	84976	Hs.528817	NM_032890	HPRD:06326	DISP1	DISPA	dispatched homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_75302	chr4	53617656	53617965	+	13.81159	NA	promoter-TSS (NM_024534)	promoter-TSS (NM_024534)	-3	NM_001242690	100288413	Hs.363087	NM_024534	ENSG00000226887	ERVMER34-1	-	endogenous retrovirus group MER34, member 1	protein-coding
19-PTNLD28-TUMOR_peak_47753	chr19	15813491	15813766	+	13.81159	NA	Intergenic	L1PBa|LINE|L1	-25206	NM_013939	26538	Hs.247694	NM_013939	HPRD:17668	OR10H2	-	olfactory receptor, family 10, subfamily H, member 2	protein-coding
19-PTNLD28-TUMOR_peak_15724	chr10	115408363	115408490	+	13.81159	NA	intron (NM_198060, intron 9 of 41)	intron (NM_198060, intron 9 of 41)	15403	NM_198060	4892	Hs.268788	NM_006175	HPRD:04189	NRAP	N-RAP	nebulin-related anchoring protein	protein-coding
19-PTNLD28-TUMOR_peak_81919	chr5	125839332	125839440	+	13.81159	NA	Intergenic	Intergenic	38599	NM_001146322	65983	Hs.363558	NM_023927	HPRD:11402	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_1982	chr1	31158313	31158481	+	13.81159	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-33222	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87713	chr6	44623240	44623409	+	13.81159	NA	Intergenic	Intergenic	219946	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_34107	chr15	67224436	67224702	+	13.81159	NA	Intergenic	Intergenic	-133626	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_65496	chr22	38732127	38732465	+	13.81159	NA	intron (NM_001289912, intron 5 of 14)	(CCCCG)n|Simple_repeat|Simple_repeat	-18207	NM_001894	1454	Hs.474833	NM_001894	HPRD:02919	CSNK1E	CKIepsilon|HCKIE	casein kinase 1, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_64881	chr22	27061489	27061701	+	13.81159	NA	non-coding (NR_003491, exon 3 of 5)	non-coding (NR_003491, exon 3 of 5)	-7211	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_100169	chr8	116464378	116464568	+	13.81159	NA	intron (NM_001282902, intron 4 of 5)	intron (NM_001282902, intron 4 of 5)	215766	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_51848	chr2	28872939	28873082	+	13.81159	NA	Intergenic	MIR|SINE|MIR	-101604	NM_206876	5500	Hs.702907	NM_002709	HPRD:11792	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1, catalytic subunit, beta isozyme	protein-coding
19-PTNLD28-TUMOR_peak_103294	chr9	44812930	44813076	+	13.81159	NA	Intergenic	MER115|DNA|hAT-Tip100	-177233	NR_027421	100132948	Hs.645763	NM_001024942	ENSG00000154537	FAM27C	FAM27A|FAM27A1|FAM27A3	family with sequence similarity 27, member C	ncRNA
19-PTNLD28-TUMOR_peak_18000	chr11	34502953	34503082	+	13.81159	NA	intron (NM_001243081, intron 4 of 5)	intron (NM_001243081, intron 4 of 5)	30329	NM_001243081	2001	Hs.11713	NM_001422	HPRD:05525	ELF5	ESE2	E74-like factor 5 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_27422	chr13	22310074	22310374	+	13.81159	NA	Intergenic	Intergenic	65009	NM_002010	2254	Hs.111	NM_002010	HPRD:02951	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
19-PTNLD28-TUMOR_peak_64354	chr22	19718231	19718648	+	13.81034	NA	Intergenic	CpG	7373	NM_000407	2812	Hs.283743	NM_000407		GP1BB	BDPLT1|BS|CD42C|GPIBB	glycoprotein Ib (platelet), beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_52137	chr2	37423553	37424324	+	13.81034	NA	intron (NR_037880, intron 1 of 4)	CpG	303	NR_037880	100505876	Hs.743972	NR_037879	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_12624	chr10	28952912	28953024	+	13.81034	NA	Intergenic	Intergenic	-13456	NM_012342	25805	Hs.533336	NM_012342	HPRD:05117	BAMBI	NMA	BMP and activin membrane-bound inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_95190	chr7	128955725	128956186	+	13.81034	NA	intron (NM_001130720, intron 1 of 16)	L3|LINE|CR1	-52009	NM_001130723	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_69561	chr3	106927047	106927337	+	13.81034	NA	intron (NR_028303, intron 1 of 3)	intron (NR_028303, intron 1 of 3)	32293	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_86033	chr6	25193285	25193739	+	13.81034	NA	Intergenic	Intergenic	-54892	NR_027626	8418	Hs.484918	NR_002174		CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_94111	chr7	97580850	97581214	+	13.81034	NA	Intergenic	HERVE-int|LTR|ERV1	20606	NR_002822	389538	Hs.655977	NR_002822		MGC72080	-	MGC72080 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_93975	chr7	93545260	93545441	+	13.80476	NA	Intergenic	Intergenic	-5666	NM_004126	2791	Hs.83381	NM_004126		GNG11	GNGT11	guanine nucleotide binding protein (G protein), gamma 11	protein-coding
19-PTNLD28-TUMOR_peak_7738	chr1	161993408	161993797	+	13.80476	NA	5' UTR (NM_001297713, exon 1 of 8)	5' UTR (NM_001297713, exon 1 of 8)	653	NM_001297713	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_105580	chr9	117047824	117047992	+	13.80476	NA	intron (NM_032888, intron 41 of 60)	intron (NM_032888, intron 41 of 60)	-37395	NM_000607	5004	Hs.522356	NM_000607	HPRD:00724	ORM1	AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
19-PTNLD28-TUMOR_peak_105261	chr9	111315077	111315242	+	13.80300	NA	Intergenic	Intergenic	303116	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_70764	chr3	129804697	129804828	+	13.79879	NA	intron (NM_001136152, intron 1 of 7)	intron (NM_001136152, intron 1 of 7)	4088	NM_001136152	644974	Hs.722197	NM_001136152	ENSG00000251287	ALG1L2	-	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_9562	chr1	204716059	204716210	+	13.79879	NA	Intergenic	Intergenic	-61537	NM_201630	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_66842	chr3	14625155	14625307	+	13.79879	NA	Intergenic	Intergenic	-43381	NM_001080423	80852	Hs.517819	NM_001080423		GRIP2	-	glutamate receptor interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_94972	chr7	120497711	120498267	+	13.79879	NA	5' UTR (NM_012338, exon 1 of 8)	5' UTR (NM_012338, exon 1 of 8)	188	NM_012338	23554	Hs.16529	NM_012338	HPRD:15509	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
19-PTNLD28-TUMOR_peak_45523	chr18	44299061	44299265	+	13.79879	NA	intron (NM_013305, intron 1 of 6)	intron (NM_013305, intron 1 of 6)	37876	NM_013305	29906	Hs.465025	NM_013305	HPRD:06199	ST8SIA5	SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_97185	chr8	11790944	11791140	+	13.79879	NA	Intergenic	HERVE-int|LTR|ERV1	41066	NM_001033018	613210	Hs.558285	NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin, beta 136	protein-coding
19-PTNLD28-TUMOR_peak_30482	chr14	56585058	56585327	+	13.79879	NA	promoter-TSS (NM_021255)	promoter-TSS (NM_021255)	99	NM_021255	57161	Hs.657926	NM_021255	HPRD:17835	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_20659	chr11	94808072	94808289	+	13.79879	NA	Intergenic	Intergenic	8139	NR_103726	10929	Hs.476680	NM_032102		SRSF8	DSM-1|SFRS2B|SRP46	serine/arginine-rich splicing factor 8	protein-coding
19-PTNLD28-TUMOR_peak_98467	chr8	42269992	42270169	+	13.79879	NA	Intergenic	Intergenic	20801	NM_001135694	7419	Hs.699301	NM_005662	HPRD:06750	VDAC3	HD-VDAC3|VDAC-3	voltage-dependent anion channel 3	protein-coding
19-PTNLD28-TUMOR_peak_54314	chr2	97297739	97298079	+	13.79879	NA	intron (NR_047654, intron 2 of 20)	intron (NR_047654, intron 2 of 20)	5888	NR_047658	55683	Hs.516341	NM_017991	HPRD:07643	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_45688	chr18	47252610	47252805	+	13.79879	NA	Intergenic	Intergenic	87544	NM_006111	10449	Hs.200136	NM_006111	HPRD:10380	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_12561	chr10	27235134	27235684	+	13.79879	NA	Intergenic	Intergenic	-4479	NR_026795	387644	Hs.529965	NR_026795	ENSG00000232224	LINC00202-1	C10orf51|LINC00202|NCRNA00202|bB27G4.1	long intergenic non-protein coding RNA 202-1	ncRNA
19-PTNLD28-TUMOR_peak_33122	chr15	39712757	39713395	+	13.79879	NA	Intergenic	L1PA2|LINE|L1	-160204	NM_003246	7057	Hs.164226	NM_003246		THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
19-PTNLD28-TUMOR_peak_44927	chr18	21402779	21402900	+	13.79828	NA	intron (NM_198129, intron 20 of 74)	intron (NM_198129, intron 20 of 74)	-50145	NM_001127718	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_105452	chr9	114813037	114813201	+	13.79445	NA	intron (NM_001282640, intron 15 of 17)	MLT1A-int|LTR|ERVL-MaLR	118739	NR_039814	100616114		NR_039814		MIR4668	-	microRNA 4668	ncRNA
19-PTNLD28-TUMOR_peak_83812	chr5	169213295	169213529	+	13.79445	NA	intron (NM_004946, intron 25 of 51)	intron (NM_004946, intron 25 of 51)	149161	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_22079	chr11	128826459	128826610	+	13.79445	NA	Intergenic	Intergenic	-13240	NM_022112	63970	Hs.160953	NM_022112	HPRD:10397	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_69395	chr3	98969230	98969438	+	13.79445	NA	Intergenic	Intergenic	-348801	NM_080927	131566	Hs.203691	NM_080927	HPRD:10567	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_82573	chr5	139188257	139188412	+	13.79445	NA	intron (NM_032289, intron 1 of 14)	intron (NM_032289, intron 1 of 14)	12928	NM_032289	84249	Hs.21963	NM_032289	HPRD:15190	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_69979	chr3	116582965	116583435	+	13.79445	NA	Intergenic	Intergenic	-57078	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_51621	chr2	25841663	25841877	+	13.79445	NA	intron (NM_183360, intron 4 of 19)	intron (NM_183360, intron 4 of 19)	31321	NM_001256308	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_104412	chr9	91159218	91159480	+	13.79445	NA	exon (NM_001161625, exon 2 of 2)	exon (NM_001161625, exon 2 of 2)	9333	NM_001161625	158046	Hs.734507	NM_145283	HPRD:12938	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_20404	chr11	85666690	85666919	+	13.79445	NA	Intergenic	Intergenic	100660	NM_173556	220047	Hs.567774	NM_173556	HPRD:14586	CCDC83	CT148	coiled-coil domain containing 83	protein-coding
19-PTNLD28-TUMOR_peak_5261	chr1	107127391	107127584	+	13.79445	NA	Intergenic	Intergenic	-471780	NM_018137	55170	Hs.26006	NM_018137	HPRD:10505	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_105576	chr9	117012553	117012828	+	13.79445	NA	intron (NM_032888, intron 24 of 60)	intron (NM_032888, intron 24 of 60)	40976	NR_030255	619556		NR_030255		MIR455	MIRN455|hsa-mir-455	microRNA 455	ncRNA
19-PTNLD28-TUMOR_peak_18962	chr11	62148319	62148660	+	13.79445	NA	intron (NM_025080, intron 4 of 6)	HERVK-int|LTR|ERVK	-38018	NM_003357	7356	Hs.523732	NM_003357	HPRD:01884	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
19-PTNLD28-TUMOR_peak_54472	chr2	100869635	100869820	+	13.79445	NA	Intergenic	Intergenic	45011	NR_103730	150577	Hs.434127	NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
19-PTNLD28-TUMOR_peak_1626	chr1	26185815	26186082	+	13.79445	NA	promoter-TSS (NM_001287490)	promoter-TSS (NM_001287490)	1	NM_001287490	79000	Hs.149305	NM_024037	HPRD:08323	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_84134	chr5	173888386	173888587	+	13.79445	NA	intron (NR_125806, intron 2 of 5)	intron (NR_125806, intron 2 of 5)	125129	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_95031	chr7	126471237	126471389	+	13.79445	NA	intron (NR_028041, intron 5 of 10)	L1PA3|LINE|L1	226925	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_70393	chr3	125042663	125042831	+	13.79445	NA	intron (NM_021964, intron 2 of 8)	AluY|SINE|Alu	51451	NM_021964	7707	Hs.592591	NM_021964	HPRD:03540	ZNF148	BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
19-PTNLD28-TUMOR_peak_109520	chrX	133594159	133594398	+	13.79445	NA	5' UTR (NM_000194, exon 1 of 9)	5' UTR (NM_000194, exon 1 of 9)	103	NM_000194	3251	Hs.412707	NM_000194	HPRD:02388	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_97939	chr8	28799070	28799258	+	13.79445	NA	intron (NM_024567, intron 2 of 10)	intron (NM_024567, intron 2 of 10)	50939	NM_024567	79618	Hs.563560	NM_024567	HPRD:07964	HMBOX1	HNF1LA|HOT1|PBHNF	homeobox containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58463	chr2	219936368	219936553	+	13.79445	NA	Intergenic	Intergenic	-11222	NM_002181	3549	Hs.654504	NM_002181	HPRD:02839	IHH	BDA1|HHG2	indian hedgehog	protein-coding
19-PTNLD28-TUMOR_peak_31026	chr14	69711777	69711930	+	13.79445	NA	Intergenic	Intergenic	-14828	NM_020692	57452	Hs.21035	NM_020692	HPRD:13562	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
19-PTNLD28-TUMOR_peak_45377	chr18	40097978	40098120	+	13.79445	NA	non-coding (NR_046455, exon 5 of 5)	non-coding (NR_046455, exon 5 of 5)	331416	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_44627	chr18	12076418	12076755	+	13.79445	NA	Intergenic	CpG	-17262	NM_001277333	342850	Hs.448906	NM_001277333	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
19-PTNLD28-TUMOR_peak_46627	chr19	2032425	2032842	+	13.79347	NA	Intergenic	Intergenic	-16931	NM_017797	55643	Hs.465543	NM_017797	HPRD:12252	BTBD2	-	BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102401	chr9	19922611	19922759	+	13.79347	NA	Intergenic	Intergenic	-135668	NM_020344	25769	Hs.283014	NM_020344	HPRD:15351	SLC24A2	NCKX2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_46932	chr19	6745061	6745390	+	13.79347	NA	intron (NM_001288963, intron 9 of 13)	intron (NM_001288963, intron 9 of 13)	5532	NR_110231	9322	Hs.515094	NM_004240	HPRD:05142	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
19-PTNLD28-TUMOR_peak_97537	chr8	21927436	21927813	+	13.79347	NA	intron (NM_001114136, intron 7 of 15)	intron (NM_001114136, intron 7 of 15)	10938	NM_001114138	2039	Hs.106124	NM_001978	HPRD:00506	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
19-PTNLD28-TUMOR_peak_13562	chr10	50776359	50776531	+	13.79347	NA	Intergenic	MLT1E3-int|LTR|ERVL-MaLR	-28861	NM_001277059	101243544	Hs.49063	NM_001277058	ENSG00000243251	ERCC6-PGBD3	CPFP|CSB-PGBD3	ERCC6-PGBD3 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_40065	chr17	8067645	8067889	+	13.79347	NA	Intergenic	Intergenic	-1474	NM_014232	6844	Hs.25348	NM_014232	HPRD:01717	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
19-PTNLD28-TUMOR_peak_51084	chr2	10587733	10588000	+	13.79346	NA	promoter-TSS (NR_028374)	promoter-TSS (NR_028374)	59	NM_001287189	4953	Hs.467701	NM_002539	HPRD:01324	ODC1	ODC	ornithine decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_9753	chr1	206680684	206680941	+	13.79346	NA	promoter-TSS (NM_182664)	promoter-TSS (NM_182664)	-51	NM_182664	83593	Hs.497579	NM_031437	HPRD:06117	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_83506	chr5	157481468	157481681	+	13.78892	NA	Intergenic	Intergenic	-195391	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_22714	chr12	6288238	6288441	+	13.78324	NA	Intergenic	Intergenic	-21143	NM_001769	928	Hs.114286	NM_001769	HPRD:00880	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
19-PTNLD28-TUMOR_peak_84072	chr5	173073877	173074046	+	13.78324	NA	Intergenic	Intergenic	-30295	NM_138369	91272	Hs.425091	NM_138369	HPRD:13309	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
19-PTNLD28-TUMOR_peak_29553	chr14	24559824	24559969	+	13.78324	NA	Intergenic	Intergenic	-3444	NM_001291556	5106	Hs.75812	NM_004563	HPRD:02026	PCK2	PEPCK|PEPCK-M|PEPCK2	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_6368	chr1	146057370	146057505	+	13.78178	NA	non-coding (NR_046188, exon 6 of 25).2	non-coding (NR_046188, exon 6 of 25).2	8819	NM_001101663	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_6284	chr1	145254449	145254651	+	13.78069	NA	intron (NM_203458, intron 2 of 4)	intron (NM_203458, intron 2 of 4)	-35220	NR_104217	101929780	Hs.534675	NR_104217		NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family, member 25, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86572	chr6	31088205	31088459	+	13.77876	NA	promoter-TSS (NM_001264)	promoter-TSS (NM_001264)	-80	NM_001264	1041	Hs.310958	NM_001264	HPRD:03998	CDSN	D6S586E|HTSS|HTSS1|HYPT2|PSS|S	corneodesmosin	protein-coding
19-PTNLD28-TUMOR_peak_50555	chr19	58665852	58666003	+	13.76726	NA	Intergenic	Intergenic	-3779	NM_024620	79673	Hs.458377	NM_024620	HPRD:07779	ZNF329	-	zinc finger protein 329	protein-coding
19-PTNLD28-TUMOR_peak_859	chr1	12676244	12676365	+	13.76726	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	1433	NM_004753	9249	Hs.289347	NM_004753	HPRD:09915	DHRS3	DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding
19-PTNLD28-TUMOR_peak_2704	chr1	40420718	40421019	+	13.76193	NA	promoter-TSS (NM_001287809)	promoter-TSS (NM_001287809)	84	NM_032793	84879	Hs.655177	NM_032793	HPRD:07861	MFSD2A	MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_70070	chr3	119917263	119917426	+	13.76190	NA	intron (NM_153002, intron 2 of 8)	L2a|LINE|L2	45798	NM_001168271	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_37384	chr16	31985683	31985800	+	13.76190	NA	Intergenic	Intergenic	100662	NM_001265588	10308	Hs.460645	NM_003414	HPRD:06883	ZNF267	HZF2	zinc finger protein 267	protein-coding
19-PTNLD28-TUMOR_peak_72875	chr3	185516603	185516783	+	13.76017	NA	intron (NM_001007225, intron 2 of 14)	AluJb|SINE|Alu	22226	NM_001291874	10644	Hs.35354	NM_006548	HPRD:10507	IGF2BP2	IMP-2|IMP2|VICKZ2	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_41465	chr17	39822176	39822432	+	13.75373	NA	Intergenic	CpG	-22823	NM_005801	10209	Hs.150580	NM_005801		EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_65892	chr22	45151896	45152123	+	13.75373	NA	intron (NM_001017526, intron 1 of 12)	intron (NM_001017526, intron 1 of 12)	3571	NM_001017526	23779	Hs.102336	NM_181335	HPRD:06448	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
19-PTNLD28-TUMOR_peak_42959	chr17	63430497	63430661	+	13.75279	NA	Intergenic	Intergenic	127161	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_90806	chr7	1126428	1126838	+	13.75279	NA	5' UTR (NM_001505, exon 1 of 2)	5' UTR (NM_001505, exon 1 of 2)	190	NM_001039966	2852	Hs.20961	NM_001505	HPRD:03484	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_63563	chr21	40420689	40420817	+	13.75279	NA	Intergenic	L1MB8|LINE|L1	-71053	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LOC101928435	-	uncharacterized LOC101928435	ncRNA
19-PTNLD28-TUMOR_peak_106627	chr9	136996327	136996483	+	13.75279	NA	Intergenic	Intergenic	-4805	NM_017588	11091	Hs.397638	NM_017588	HPRD:10614	WDR5	BIG-3|SWD3	WD repeat domain 5	protein-coding
19-PTNLD28-TUMOR_peak_107500	chrX	9431075	9431208	+	13.75245	NA	promoter-TSS (NM_001139467)	promoter-TSS (NM_001139467)	-194	NM_001139468	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_85943	chr6	24127102	24127269	+	13.75245	NA	intron (NM_080723, intron 1 of 3)	intron (NM_080723, intron 1 of 3)	771	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_67181	chr3	24089518	24089771	+	13.75245	NA	Intergenic	L2c|LINE|L2	55094	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
19-PTNLD28-TUMOR_peak_47668	chr19	14696105	14696322	+	13.75245	NA	intron (NR_109785, intron 2 of 12)	intron (NR_109785, intron 2 of 12)	2317	NR_109784	388512	Hs.567933	NM_207390	HPRD:16993	CLEC17A	-	C-type lectin domain family 17, member A	protein-coding
19-PTNLD28-TUMOR_peak_10855	chr1	231942542	231942663	+	13.75245	NA	intron (NM_001012959, intron 8 of 9)	intron (NM_001012959, intron 8 of 9)	11661	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82531	chr5	138910865	138911000	+	13.75245	NA	Intergenic	LTR2B|LTR|ERV1	-29819	NM_003339	7322	Hs.108332	NM_003339	HPRD:04268	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin-conjugating enzyme E2D 2	protein-coding
19-PTNLD28-TUMOR_peak_6423	chr1	146745157	146745296	+	13.75245	NA	intron (NM_004284, intron 12 of 22)	intron (NM_004284, intron 12 of 22)	30935	NM_001256337	9557	Hs.191164	NM_004284	HPRD:09880	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_106548	chr9	135869837	135870246	+	13.75245	NA	Intergenic	Intergenic	15943	NM_001135031	8328	Hs.553160	NM_004188	HPRD:05088	GFI1B	BDPLT17	growth factor independent 1B transcription repressor	protein-coding
19-PTNLD28-TUMOR_peak_67906	chr3	46030468	46030591	+	13.75245	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	6787	NM_024513	79443	Hs.200227	NM_024513	HPRD:06215	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_84998	chr6	4664424	4664569	+	13.75245	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-41897	NR_026590	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_85528	chr6	13881799	13882390	+	13.75006	NA	Intergenic	HERV17-int|LTR|ERV1	-42583	NM_001165034	221687	Hs.111164	NM_152737	HPRD:15264	RNF182	-	ring finger protein 182	protein-coding
19-PTNLD28-TUMOR_peak_104768	chr9	98079609	98079764	+	13.75006	NA	promoter-TSS (NM_001243743)	promoter-TSS (NM_001243743)	-150	NM_001243743	2176	Hs.494529	NM_000136	HPRD:01967	FANCC	FA3|FAC|FACC	Fanconi anemia, complementation group C	protein-coding
19-PTNLD28-TUMOR_peak_60696	chr20	33850304	33850543	+	13.74946	NA	intron (NM_006690, intron 4 of 8)	LTR5_Hs|LTR|ERVK	15537	NR_102706	101410538	Hs.356273	NR_102705		MMP24-AS1	-	MMP24 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24033	chr12	48223108	48223236	+	13.74946	NA	Intergenic	Intergenic	-9409	NM_015401	51564	Hs.200063	NM_015401	HPRD:09133	HDAC7	HD7A|HDAC7A	histone deacetylase 7	protein-coding
19-PTNLD28-TUMOR_peak_79826	chr5	52083624	52084000	+	13.74946	NA	promoter-TSS (NM_181501)	promoter-TSS (NM_181501)	38	NM_015946	53918	Hs.644352	NM_015946		PELO	PRO1770	pelota homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_42054	chr17	46569972	46570119	+	13.74946	NA	Intergenic	CpG	38227	NM_002144	3211	Hs.99992	NM_002144		HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
19-PTNLD28-TUMOR_peak_36111	chr16	8164827	8165342	+	13.74946	NA	Intergenic	SVA_D|Other|Other	422744	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_25827	chr12	101801785	101801988	+	13.74946	NA	promoter-TSS (NM_001301068)	promoter-TSS (NM_001301068)	-288	NM_001301068	400	Hs.372616	NM_001177	HPRD:04574	ARL1	ARFL1	ADP-ribosylation factor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21581	chr11	119287984	119288290	+	13.74938	NA	TTS (NM_006288)	TTS (NM_006288)	6109	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
19-PTNLD28-TUMOR_peak_105411	chr9	113800689	113800824	+	13.74595	NA	promoter-TSS (NM_001401)	promoter-TSS (NM_001401)	-391	NM_057159	1902	Hs.126667	NM_001401	HPRD:03790	LPAR1	EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1	lysophosphatidic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_13747	chr10	60935663	60936205	+	13.74595	NA	promoter-TSS (NM_032439)	promoter-TSS (NM_032439)	-414	NM_032439	84457	Hs.499704	NM_032439	HPRD:15131	PHYHIPL	-	phytanoyl-CoA 2-hydroxylase interacting protein-like	protein-coding
19-PTNLD28-TUMOR_peak_12705	chr10	30282536	30282826	+	13.74595	NA	Intergenic	Intergenic	65807	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_3534	chr1	53392952	53393347	+	13.74595	NA	intron (NM_001193617, intron 1 of 14)	CpG	248	NM_002979	6342	Hs.476365	NM_002979	HPRD:01700	SCP2	NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
19-PTNLD28-TUMOR_peak_98608	chr8	48100206	48100678	+	13.74595	NA	promoter-TSS (NR_037168)	promoter-TSS (NR_037168)	-488	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86897	chr6	33853046	33853203	+	13.74595	NA	Intergenic	MIR3|SINE|MIR	11560	NR_038989	100507584	Hs.547104	NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
19-PTNLD28-TUMOR_peak_94473	chr7	101596374	101596630	+	13.74595	NA	intron (NM_001202544, intron 2 of 21)	intron (NM_001202544, intron 2 of 21)	135620	NM_181552	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_84646	chr6	291609	291809	+	13.74195	NA	promoter-TSS (NM_020185)	promoter-TSS (NM_020185)	-348	NR_104475	56940	Hs.29106	NM_020185	HPRD:13255	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
19-PTNLD28-TUMOR_peak_11279	chr1	240768219	240768434	+	13.73869	NA	intron (NM_022469, intron 1 of 1)	LTR10C|LTR|ERV1	7136	NM_022469	64388	Hs.98206	NM_022469	HPRD:16390	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_14906	chr10	93643498	93643657	+	13.73869	NA	Intergenic	Intergenic	25681	NM_152429	143282	Hs.466120	NM_152429	HPRD:08499	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_105274	chr9	111523958	111524308	+	13.73869	NA	Intergenic	Intergenic	94142	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_13564	chr10	50793510	50793711	+	13.73869	NA	Intergenic	L1MA6|LINE|L1	-23531	NM_020984	1103	Hs.302002	NM_020549	HPRD:07510	CHAT	CHOACTASE|CMS1A|CMS1A2	choline O-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_21058	chr11	109785864	109786294	+	13.73869	NA	Intergenic	Intergenic	-178008	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
19-PTNLD28-TUMOR_peak_26108	chr12	108312140	108312276	+	13.73869	NA	Intergenic	Intergenic	-14660	NR_037629	728739	Hs.741995	NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26385	chr12	113277235	113277410	+	13.73869	NA	intron (NM_001143854, intron 4 of 21)	MLT1H|LTR|ERVL-MaLR	47773	NM_001143854	22895	Hs.21239	NM_014954	HPRD:15273	RPH3A	-	rabphilin 3A	protein-coding
19-PTNLD28-TUMOR_peak_65039	chr22	30303849	30304045	+	13.73869	NA	intron (NM_021090, intron 1 of 19)	intron (NM_021090, intron 1 of 19)	24789	NM_153051	8897	Hs.474536	NM_021090	HPRD:09151	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
19-PTNLD28-TUMOR_peak_57322	chr2	183321393	183321798	+	13.73869	NA	intron (NM_001003683, intron 2 of 14)	MER20B|DNA|hAT-Charlie	-29820	NM_001258313	5136	Hs.191046	NM_005019	HPRD:01387	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_76574	chr4	110566111	110566241	+	13.73869	NA	intron (NM_017918, intron 1 of 7)	L2|LINE|L2	58453	NM_001226	839	Hs.654616	NM_001226	HPRD:03321	CASP6	MCH2	caspase 6, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_46045	chr18	59139125	59139361	+	13.73869	NA	Intergenic	Intergenic	-18532	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_81132	chr5	90628222	90628413	+	13.73869	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-18098	NR_103549	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_75438	chr4	57687621	57687901	+	13.73869	NA	promoter-TSS (NR_073417)	promoter-TSS (NR_073417)	-122	NR_073419	6691	Hs.98243	NM_021114	HPRD:10422	SPINK2	HUSI-II	serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)	protein-coding
19-PTNLD28-TUMOR_peak_24175	chr12	50433121	50433247	+	13.73869	NA	Intergenic	Intergenic	-13877	NM_013277	29127	Hs.505469	NM_013277	HPRD:05402	RACGAP1	CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_12656	chr10	29760537	29760741	+	13.73869	NA	intron (NM_003174, intron 28 of 35)	intron (NM_003174, intron 28 of 35)	61467	NR_110928	102724316	Hs.499209	NR_003930		SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44630	chr18	12200297	12200448	+	13.73869	NA	promoter-TSS (NR_049896)	promoter-TSS (NR_049896)	-406	NR_049896	497259	Hs.451609	NR_049896		C18orf61	-	uncharacterized LOC497259	ncRNA
19-PTNLD28-TUMOR_peak_92081	chr7	38624019	38624275	+	13.73869	NA	intron (NM_001635, intron 1 of 20)	intron (NM_001635, intron 1 of 20)	47020	NM_001635	273	Hs.592182	NM_001635	HPRD:02687	AMPH	AMPH1	amphiphysin	protein-coding
19-PTNLD28-TUMOR_peak_77102	chr4	134999516	134999676	+	13.73869	NA	Intergenic	Intergenic	123307	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_45959	chr18	56510604	56510855	+	13.73869	NA	Intergenic	Intergenic	-19332	NM_018181	55205	Hs.529023	NM_018181	HPRD:11724	ZNF532	-	zinc finger protein 532	protein-coding
19-PTNLD28-TUMOR_peak_83502	chr5	157382704	157382891	+	13.73869	NA	Intergenic	Intergenic	-96614	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_68073	chr3	48777452	48777668	+	13.73869	NA	Intergenic	Intergenic	-22849	NR_027437	51447	Hs.595983	NM_016291	HPRD:07380	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_31959	chr14	98559538	98559667	+	13.73869	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-115141	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	ncRNA
19-PTNLD28-TUMOR_peak_29812	chr14	34161276	34161383	+	13.73869	NA	intron (NM_001165893, intron 5 of 10)	intron (NM_001165893, intron 5 of 10)	258955	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_107616	chrX	14127497	14127634	+	13.73869	NA	Intergenic	L1PA3|LINE|L1	-79530	NM_001042480	54960	Hs.592237	NM_017856	HPRD:06533	GEMIN8	FAM51A1	gem (nuclear organelle) associated protein 8	protein-coding
19-PTNLD28-TUMOR_peak_100248	chr8	118631685	118631877	+	13.73869	NA	Intergenic	L2a|LINE|L2	98829	NM_080651	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_19859	chr11	71950576	71951242	+	13.73838	NA	TTS (NM_001567)	TTS (NM_001567)	4311	NM_005169	401	Hs.731115	NM_005169	HPRD:04129	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired-like homeobox 2a	protein-coding
19-PTNLD28-TUMOR_peak_64723	chr22	24317140	24317320	+	13.73838	NA	promoter-TSS (NM_001084392)	promoter-TSS (NM_001084392)	-550	NM_001084392	1652	Hs.656723	NM_001355	HPRD:04126	DDT	DDCT	D-dopachrome tautomerase	protein-coding
19-PTNLD28-TUMOR_peak_94523	chr7	102155903	102156052	+	13.73557	NA	intron (NM_001277335, intron 1 of 19)	L2c|LINE|L2	2247	NM_001277335	100271927	Hs.530089	NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
19-PTNLD28-TUMOR_peak_30751	chr14	64804960	64805323	+	13.73375	NA	non-coding (NR_073496, exon 1 of 8)	non-coding (NR_073496, exon 1 of 8)	127	NM_001291712	2100	Hs.660607	NM_001437	HPRD:03390	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2	estrogen receptor 2 (ER beta)	protein-coding
19-PTNLD28-TUMOR_peak_97313	chr8	17013218	17014292	+	13.73018	NA	promoter-TSS (NM_016353)	promoter-TSS (NM_016353)	-81	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	zinc finger, DHHC-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_17756	chr11	28259666	28259838	+	13.72815	NA	intron (NM_001297775, intron 4 of 6)	L1PA3|LINE|L1	129954	NM_001297775	196074	Hs.243326	NM_152636	HPRD:08750	METTL15	METT5D1	methyltransferase like 15	protein-coding
19-PTNLD28-TUMOR_peak_26874	chr12	123365373	123365532	+	13.72815	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	15260	NM_024667	79720	Hs.507162	NM_024667	HPRD:07794	VPS37B	-	vacuolar protein sorting 37 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_108001	chrX	40398916	40399140	+	13.72815	NA	Intergenic	LTR16A|LTR|ERVL	-41188	NM_005765	10159	Hs.495960	NM_005765	HPRD:06454	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_39999	chr17	7494166	7494326	+	13.72815	NA	promoter-TSS (NM_006942)	promoter-TSS (NM_006942)	-758	NM_006942	6665	Hs.95582	NM_006942	HPRD:03191	SOX15	SOX20|SOX26|SOX27	SRY (sex determining region Y)-box 15	protein-coding
19-PTNLD28-TUMOR_peak_30631	chr14	61201391	61201931	+	13.72815	NA	exon (NM_002431, exon 1 of 8)	exon (NM_002431, exon 1 of 8)	202	NM_002431	4331	Hs.509523	NM_002431	HPRD:04042	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT CDK-activating kinase assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_83451	chr5	156402889	156403094	+	13.72815	NA	Intergenic	Intergenic	-12725	NM_001146726	91937	Hs.334907	NM_138379	HPRD:15508	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_96568	chr7	153899195	153899393	+	13.72815	NA	intron (NM_001290253, intron 1 of 5)	intron (NM_001290253, intron 1 of 5)	-103003	NM_001936	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_40800	chr17	27065144	27065288	+	13.72815	NA	exon (NM_178170, exon 8 of 15)	exon (NM_178170, exon 8 of 15)	-5807	NM_004295	9618	Hs.8375	NM_004295	HPRD:03915	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_32972	chr15	33518914	33519083	+	13.72815	NA	Intergenic	MER51E|LTR|ERV1	20758	NR_046005	100652857	Hs.439998	NR_046005		TMCO5B	-	transmembrane and coiled-coil domains 5B, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91134	chr7	5896207	5896393	+	13.72815	NA	Intergenic	L1MEc|LINE|L1	-24129	NM_001097622	654231	Hs.571315	NM_001097622	ENSG00000122543	OCM	OCM1|OM|ONCM	oncomodulin	protein-coding
19-PTNLD28-TUMOR_peak_104550	chr9	93960199	93960430	+	13.72599	NA	Intergenic	Intergenic	-122900	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
19-PTNLD28-TUMOR_peak_13332	chr10	46519906	46520041	+	13.72525	NA	Intergenic	Intergenic	100085	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_27005	chr12	125214991	125215142	+	13.71977	NA	Intergenic	L1ME1|LINE|L1	133453	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_48542	chr19	33599168	33599348	+	13.71947	NA	intron (NM_018025, intron 10 of 19)	L2a|LINE|L2	-23740	NM_173479	126248	Hs.211046	NM_173479	HPRD:14033	WDR88	PQWD	WD repeat domain 88	protein-coding
19-PTNLD28-TUMOR_peak_96483	chr7	152408380	152408610	+	13.71947	NA	Intergenic	Intergenic	-35245	NM_005431	7516	Hs.647093	NM_005431	HPRD:02656	XRCC2	-	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding
19-PTNLD28-TUMOR_peak_40569	chr17	19506353	19506469	+	13.71694	NA	Intergenic	Intergenic	45538	NR_003025	677885	Hs.658450	NR_003025		SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
19-PTNLD28-TUMOR_peak_9404	chr1	203168974	203169382	+	13.71433	NA	Intergenic	Intergenic	-13256	NM_001276	1116	Hs.382202	NM_001276	HPRD:03314	CHI3L1	ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YKL-40|YKL40|YYL-40|hCGP-39	chitinase 3-like 1 (cartilage glycoprotein-39)	protein-coding
19-PTNLD28-TUMOR_peak_41276	chr17	37036124	37036538	+	13.71433	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	10219	NM_006148	3927	Hs.741156	NM_006148	HPRD:04229	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
19-PTNLD28-TUMOR_peak_70265	chr3	123735476	123735619	+	13.71433	NA	Intergenic	Intergenic	-25348	NM_017578	54763	Hs.567516	NM_017578	HPRD:15269	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
19-PTNLD28-TUMOR_peak_69126	chr3	75422234	75422576	+	13.71433	NA	Intergenic	Intergenic	61861	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86, member D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_2694	chr1	40318219	40318453	+	13.71433	NA	intron (NM_017646, intron 4 of 10)	intron (NM_017646, intron 4 of 10)	30841	NM_017646	54802	Hs.356554	NM_017646	HPRD:18226	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_86906	chr6	33995409	33995702	+	13.71433	NA	intron (NM_001256809, intron 8 of 8)	intron (NM_001256809, intron 8 of 8)	-27727	NR_031681	100302123		NR_031681	miRBase:MI0006415	MIR1275	MIRN1275|hsa-mir-1275	microRNA 1275	ncRNA
19-PTNLD28-TUMOR_peak_96850	chr8	591999	592206	+	13.71433	NA	Intergenic	Intergenic	89124	NM_207332	157697	Hs.655310	NM_207332	HPRD:14105	ERICH1	-	glutamate-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_14263	chr10	73787987	73788184	+	13.71299	NA	Intergenic	FRAM|SINE|Alu	60446	NM_001244950	9806	Hs.523009	NM_014767	HPRD:12146	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
19-PTNLD28-TUMOR_peak_73713	chr3	197941286	197941509	+	13.70961	NA	Intergenic	Intergenic	62160	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_97552	chr8	21998356	21998979	+	13.70681	NA	intron (NM_025232, intron 1 of 7)	intron (NM_025232, intron 1 of 7)	781	NM_025232	80346	Hs.289063	NM_025232	HPRD:09864	REEP4	C8orf20	receptor accessory protein 4	protein-coding
19-PTNLD28-TUMOR_peak_42979	chr17	63552439	63552750	+	13.70681	NA	intron (NM_004655, intron 2 of 10)	intron (NM_004655, intron 2 of 10)	5146	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_49797	chr19	49567411	49567565	+	13.70587	NA	promoter-TSS (NM_006179)	promoter-TSS (NM_006179)	-364	NM_006179	4909	Hs.266902	NM_006179	HPRD:01220	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
19-PTNLD28-TUMOR_peak_3377	chr1	48702384	48702727	+	13.70587	NA	intron (NM_001011547, intron 10 of 13)	intron (NM_001011547, intron 10 of 13)	14198	NM_001011547	200010	Hs.37890	NM_001011547	HPRD:18060	SLC5A9	SGLT4	solute carrier family 5 (sodium/sugar cotransporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_24794	chr12	58119886	58120126	+	13.70587	NA	promoter-TSS (NR_027032)	promoter-TSS (NR_027032)	-17	NR_027032	100130776	Hs.656080	NR_027032	ENSG00000255737	AGAP2-AS1	-	AGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74384	chr4	8868434	8868627	+	13.70587	NA	TTS (NM_018942)	TTS (NM_018942)	5013	NM_018942	3166	Hs.104134	NM_018942	HPRD:00873	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_65420	chr22	37941256	37941540	+	13.70131	NA	Intergenic	Intergenic	-15073	NM_152243	11135	Hs.225356	NM_152243	HPRD:07303	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding
19-PTNLD28-TUMOR_peak_35107	chr15	89183387	89183693	+	13.69741	NA	intron (NM_002201, intron 2 of 3)	intron (NM_002201, intron 2 of 3)	1501	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
19-PTNLD28-TUMOR_peak_11090	chr1	235664567	235664749	+	13.69639	NA	intron (NM_001277155, intron 1 of 7)	intron (NM_001277155, intron 1 of 7)	3123	NM_001277155	148789	Hs.498143	NM_152490	HPRD:16533	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_101463	chr8	142288071	142288355	+	13.69639	NA	Intergenic	Intergenic	-23485	NM_001286646	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45, member 4	protein-coding
19-PTNLD28-TUMOR_peak_11934	chr10	7668343	7668526	+	13.69379	NA	intron (NM_001001851, intron 5 of 11)	intron (NM_001001851, intron 5 of 11)	-6798	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_85083	chr6	6632188	6632371	+	13.69379	NA	intron (NM_004271, intron 3 of 4)	intron (NM_004271, intron 3 of 4)	-9220	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107839	chrX	24778738	24779017	+	13.69379	NA	intron (NM_016937, intron 26 of 36)	intron (NM_016937, intron 26 of 36)	16319	NR_003007	677773	Hs.689695	NR_003007		SCARNA23	ACA12	small Cajal body-specific RNA 23	ncRNA
19-PTNLD28-TUMOR_peak_8344	chr1	175472641	175472803	+	13.69379	NA	intron (NM_003285, intron 2 of 22)	intron (NM_003285, intron 2 of 22)	240030	NM_003285	7143	Hs.659864	NM_003285	HPRD:03589	TNR	TN-R	tenascin R	protein-coding
19-PTNLD28-TUMOR_peak_5321	chr1	109224424	109224595	+	13.69379	NA	Intergenic	LTR10D|LTR|ERV1	-10423	NM_018061	55119	Hs.342307	NM_018061	HPRD:07664	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
19-PTNLD28-TUMOR_peak_84771	chr6	2021915	2022222	+	13.69379	NA	intron (NM_001500, intron 4 of 10)	intron (NM_001500, intron 4 of 10)	154157	NM_001253846	2762	Hs.144496	NM_001500	HPRD:11925	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_66049	chr22	47550330	47550703	+	13.69379	NA	intron (NR_104292, intron 13 of 13)	intron (NR_104292, intron 13 of 13)	-238578	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76071	chr4	85219980	85220561	+	13.69379	NA	Intergenic	L1PA2|LINE|L1	199117	NM_006168	4825	Hs.546270	NM_006168		NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_36596	chr16	18957386	18957739	+	13.69379	NA	Intergenic	Intergenic	-19836	NM_015092	23049	Hs.460179	NM_015092	HPRD:06123	SMG1	61E3.4|ATX|LIP	SMG1 phosphatidylinositol 3-kinase-related kinase	protein-coding
19-PTNLD28-TUMOR_peak_64014	chr21	46439011	46439273	+	13.69379	NA	Intergenic	CpG	-14500	NR_024089	378825	Hs.534828	NR_024089	ENSG00000224930	LINC00162	C21orf113|NCRNA00162|NLC1-C|NLC1C|PRED74	long intergenic non-protein coding RNA 162	ncRNA
19-PTNLD28-TUMOR_peak_23196	chr12	14100284	14100419	+	13.69379	NA	intron (NM_000834, intron 1 of 12)	intron (NM_000834, intron 1 of 12)	32671	NM_000834	2904	Hs.654430	NM_000834		GRIN2B	GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	protein-coding
19-PTNLD28-TUMOR_peak_20013	chr11	74342779	74342913	+	13.69379	NA	intron (NR_046409, intron 8 of 10)	intron (NR_046409, intron 8 of 10)	39196	NR_046410	10714	Hs.82502	NM_006591	HPRD:11446	POLD3	P66|P68|PPP1R128	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_11604	chr10	530694	530833	+	13.69379	NA	intron (NM_014974, intron 2 of 36)	CpG	156955	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_28193	chr13	48807274	48807490	+	13.69379	NA	5' UTR (NM_021999, exon 1 of 6)	5' UTR (NM_021999, exon 1 of 6)	108	NM_021999	9445	Hs.643683	NM_021999	HPRD:04878	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|imBRI2	integral membrane protein 2B	protein-coding
19-PTNLD28-TUMOR_peak_93836	chr7	88388223	88388566	+	13.69321	NA	promoter-TSS (NM_181646)	promoter-TSS (NM_181646)	-359	NM_181646	219578	Hs.684410	NM_181646	HPRD:08721	ZNF804B	-	zinc finger protein 804B	protein-coding
19-PTNLD28-TUMOR_peak_36581	chr16	18582429	18582640	+	13.69321	NA	promoter-TSS (NR_003569)	promoter-TSS (NR_003569)	-36	NR_003569	653190	Hs.13188	NR_003569	ENSG00000256340	ABCC6P1	-	ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)	pseudo
19-PTNLD28-TUMOR_peak_3235	chr1	46943229	46943400	+	13.69321	NA	Intergenic	Intergenic	-27938	NR_121680	101929651	Hs.638707	NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
19-PTNLD28-TUMOR_peak_77618	chr4	152967055	152967340	+	13.69321	NA	Intergenic	Intergenic	-54708	NR_121628	100996286	Hs.322462	NR_121627	ENSG00000245954	LOC100996286	-	uncharacterized LOC100996286	ncRNA
19-PTNLD28-TUMOR_peak_104999	chr9	102969269	102969577	+	13.69321	NA	intron (NM_014425, intron 3 of 16)	L1MC4|LINE|L1	107921	NR_051962	27130	Hs.558477	NM_014425	HPRD:08356	INVS	INV|NPH2|NPHP2	inversin	protein-coding
19-PTNLD28-TUMOR_peak_75061	chr4	40910344	40910656	+	13.69321	NA	intron (NM_004307, intron 10 of 17)	intron (NM_004307, intron 10 of 17)	-51291	NM_001166053	323	Hs.479602	NM_004307	HPRD:04088	APBB2	FE65L|FE65L1	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_32949	chr15	33131101	33131305	+	13.69321	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-120137	NR_109767	100131315	Hs.610545	NR_109767		LOC100131315	-	uncharacterized LOC100131315	ncRNA
19-PTNLD28-TUMOR_peak_86673	chr6	31835865	31836010	+	13.69102	NA	intron (NM_001178045, intron 13 of 20).7	intron (NM_001178045, intron 13 of 20).7	-5228	NM_000434	4758	Hs.520037	NM_000434	HPRD:09751	NEU1	NANH|NEU|SIAL1	sialidase 1 (lysosomal sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_50403	chr19	56092261	56092430	+	13.68980	NA	promoter-TSS (NM_152600)	promoter-TSS (NM_152600)	-134	NM_152600	163033	Hs.112529	NM_152600	HPRD:11730	ZNF579	-	zinc finger protein 579	protein-coding
19-PTNLD28-TUMOR_peak_58845	chr2	232566746	232567046	+	13.68980	NA	Intergenic	Intergenic	-6339	NM_002823	5757	Hs.459927	NM_002823	HPRD:01778	PTMA	TMSA	prothymosin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_93353	chr7	74390219	74390411	+	13.68513	NA	Intergenic	Intergenic	83428	NR_027776	5383	Hs.292996	NM_174930	HPRD:17867	PMS2P5	PMS2L5|PMS7	postmeiotic segregation increased 2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_67772	chr3	43774680	43774839	+	13.68513	NA	Intergenic	Intergenic	42384	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_96649	chr7	155580067	155580477	+	13.68513	NA	Intergenic	CpG	24695	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
19-PTNLD28-TUMOR_peak_50264	chr19	54600124	54600292	+	13.68495	NA	exon (NM_133169, exon 4 of 6)	exon (NM_133169, exon 4 of 6)	5786	NM_001282349	126014	Hs.347655	NM_130771	HPRD:06035	OSCAR	PIGR3|PIgR-3	osteoclast associated, immunoglobulin-like receptor	protein-coding
19-PTNLD28-TUMOR_peak_97398	chr8	19125186	19125361	+	13.68495	NA	Intergenic	Intergenic	-22241	NR_038919	100128993	Hs.697742	NR_038919		LOC100128993	-	uncharacterized LOC100128993	ncRNA
19-PTNLD28-TUMOR_peak_50758	chr2	864428	864604	+	13.67279	NA	promoter-TSS (NR_033880)	promoter-TSS (NR_033880)	-404	NR_111963	339822	Hs.651879	NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
19-PTNLD28-TUMOR_peak_1727	chr1	27317160	27317352	+	13.67279	NA	Intergenic	L2a|LINE|L2	-2939	NM_001013642	388610	Hs.355747	NM_001013642	HPRD:18384	TRNP1	C1orf225|TNRP	TMF1-regulated nuclear protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49608	chr19	47950684	47951148	+	13.67279	NA	intron (NM_015063, intron 4 of 9)	CpG	24391	NM_015063	6543	Hs.172884	NM_015063	HPRD:15990	SLC8A2	NCX2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_56656	chr2	161980272	161980438	+	13.67279	NA	Intergenic	Intergenic	-13111	NM_133484	10010	Hs.132257	NM_004180	HPRD:04870	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member-associated NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_27232	chr12	131959277	131959823	+	13.66658	NA	Intergenic	Intergenic	127535	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_7623	chr1	160751256	160751560	+	13.66658	NA	Intergenic	Intergenic	-14456	NM_002348	4063	Hs.403857	NM_002348	HPRD:02817	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
19-PTNLD28-TUMOR_peak_64421	chr22	20255644	20256039	+	13.66658	NA	promoter-TSS (NM_023004)	promoter-TSS (NM_023004)	-25	NM_023004	65078	Hs.30868	NM_023004	HPRD:16123	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
19-PTNLD28-TUMOR_peak_43296	chr17	72236852	72237247	+	13.66658	NA	intron (NM_032646, intron 4 of 13)	intron (NM_032646, intron 4 of 13)	-7456	NM_052869	94015	Hs.27935	NM_032646	HPRD:16394	TTYH2	C17orf29	tweety family member 2	protein-coding
19-PTNLD28-TUMOR_peak_88717	chr6	90078822	90078957	+	13.66365	NA	intron (NM_021244, intron 6 of 6)	intron (NM_021244, intron 6 of 6)	-16270	NM_016021	51465	Hs.163776	NM_016021	HPRD:15599	UBE2J1	HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p	ubiquitin-conjugating enzyme E2, J1	protein-coding
19-PTNLD28-TUMOR_peak_38648	chr16	72133279	72133489	+	13.66365	NA	intron (NM_014003, intron 7 of 26)	intron (NM_014003, intron 7 of 26)	-5169	NM_001142318	54957	Hs.134406	NM_017853	HPRD:11655	TXNL4B	DLP|Dim2	thioredoxin-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_109667	chrX	142517065	142517237	+	13.66365	NA	Intergenic	Intergenic	88152	NM_001009609	139067	Hs.447320	NM_001009609	HPRD:18092	SPANXN3	CT11.8|SPANX-N3	SPANX family, member N3	protein-coding
19-PTNLD28-TUMOR_peak_32263	chr14	104544388	104544603	+	13.66365	NA	Intergenic	LTR41|LTR|ERVL	-7528	NM_001080464	374569	Hs.146239	NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT	asparaginase	protein-coding
19-PTNLD28-TUMOR_peak_63101	chr21	31607108	31607274	+	13.66365	NA	Intergenic	Intergenic	-18722	NM_199328	9073	Hs.162209	NM_012132	HPRD:10835	CLDN8	-	claudin 8	protein-coding
19-PTNLD28-TUMOR_peak_67146	chr3	23609539	23609783	+	13.66365	NA	intron (NR_039621, intron 2 of 2)	intron (NR_039621, intron 2 of 2)	234035	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	ncRNA
19-PTNLD28-TUMOR_peak_54013	chr2	88971362	88971531	+	13.66365	NA	Intergenic	L2a|LINE|L2	-19730	NM_144563	22934	Hs.469264	NM_144563	HPRD:01589	RPIA	RPI	ribose 5-phosphate isomerase A	protein-coding
19-PTNLD28-TUMOR_peak_42574	chr17	56347945	56348129	+	13.66365	NA	exon (NM_000250, exon 12 of 12)	exon (NM_000250, exon 12 of 12)	10259	NM_000250	4353	Hs.458272	NM_000250	HPRD:06102	MPO	-	myeloperoxidase	protein-coding
19-PTNLD28-TUMOR_peak_100203	chr8	117572313	117572572	+	13.66365	NA	Intergenic	Intergenic	195620	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_97705	chr8	23738878	23739163	+	13.66365	NA	Intergenic	Intergenic	-26700	NM_003155	6781	Hs.25590	NM_003155	HPRD:03115	STC1	STC	stanniocalcin 1	protein-coding
19-PTNLD28-TUMOR_peak_91900	chr7	32504163	32504307	+	13.66365	NA	Intergenic	L1PA3|LINE|L1	-6129	NR_038454	100130673	Hs.609282	NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_45692	chr18	47363911	47364100	+	13.66365	NA	exon (NM_001080467, exon 37 of 40)	exon (NM_001080467, exon 37 of 40)	23612	NR_117096	103091864	Hs.646459	NR_117096		SNHG22	SCARNA17HG	small nucleolar RNA host gene 22 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_39874	chr17	5317154	5317314	+	13.66365	NA	intron (NM_002532, intron 3 of 16)	intron (NM_002532, intron 3 of 16)	-5727	NM_001160266	84268	Hs.462086	NM_032308	HPRD:14615	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_108989	chrX	101771619	101771731	+	13.66365	NA	promoter-TSS (NM_021992)	promoter-TSS (NM_021992)	24	NM_021992	11013	Hs.56145	NM_021992	HPRD:06744	TMSB15A	TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB	thymosin beta 15a	protein-coding
19-PTNLD28-TUMOR_peak_70860	chr3	131950524	131950857	+	13.66365	NA	Intergenic	tRNA-Cys-TGY|tRNA|tRNA	-85521	NM_001099	55	Hs.433060	NM_001099	HPRD:01378	ACPP	5'-NT|ACP-3|ACP3	acid phosphatase, prostate	protein-coding
19-PTNLD28-TUMOR_peak_98138	chr8	33539096	33539274	+	13.66365	NA	Intergenic	Intergenic	-81746	NM_024025	78986	Hs.8719	NM_024025	HPRD:14421	DUSP26	DUSP24|LDP-4|MKP8|NATA1|SKRP3	dual specificity phosphatase 26 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_91316	chr7	12714659	12714834	+	13.66365	NA	Intergenic	Intergenic	-11706	NM_001037164	10124	Hs.245540	NM_005738	HPRD:11987	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_107569	chrX	13025779	13026259	+	13.66365	NA	Intergenic	Intergenic	32793	NM_021109	7114	Hs.437277	NM_021109	HPRD:02153	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_51978	chr2	31046314	31046469	+	13.66365	NA	Intergenic	Intergenic	-16080	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_29447	chr14	23113240	23113437	+	13.66365	NA	Intergenic	Intergenic	46191	NM_022060	63874	Hs.445665	NM_022060	HPRD:12406	ABHD4	ABH4	abhydrolase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_45931	chr18	55914587	55914962	+	13.66365	NA	intron (NM_001243960, intron 3 of 28)	intron (NM_001243960, intron 3 of 28)	26020	NM_001144966	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_39022	chr16	82297229	82297356	+	13.66365	NA	Intergenic	Intergenic	-93463	NM_005792	10200	Hs.344400	NM_005792	HPRD:16111	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
19-PTNLD28-TUMOR_peak_62505	chr20	61064347	61064617	+	13.66347	NA	Intergenic	Intergenic	-13456	NM_080473	140628	Hs.352250	NM_080473	HPRD:17029	GATA5	GATAS|bB379O24.1	GATA binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_78562	chr5	215507	215744	+	13.66347	NA	intron (NM_145265, intron 2 of 2)	intron (NM_145265, intron 2 of 2)	2672	NM_145265	133957	Hs.294145	NM_145265		CCDC127	-	coiled-coil domain containing 127	protein-coding
19-PTNLD28-TUMOR_peak_65175	chr22	32339914	32340269	+	13.66248	NA	promoter-TSS (NM_003405)	promoter-TSS (NM_003405)	-388	NM_003405	7533	Hs.226755	NM_003405	HPRD:00215	YWHAH	YWHA1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta	protein-coding
19-PTNLD28-TUMOR_peak_43108	chr17	66201524	66201850	+	13.66248	NA	Intergenic	CpG	6886	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_35178	chr15	90590464	90590648	+	13.66248	NA	intron (NM_198526, intron 1 of 4)	MIR|SINE|MIR	45833	NM_198526	374655	Hs.459311	NM_198526	HPRD:13329	ZNF710	-	zinc finger protein 710	protein-coding
19-PTNLD28-TUMOR_peak_30351	chr14	53960201	53960359	+	13.66248	NA	Intergenic	Intergenic	340208	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
19-PTNLD28-TUMOR_peak_44054	chr17	80064243	80064458	+	13.66248	NA	intron (NM_198082, intron 16 of 16)	intron (NM_198082, intron 16 of 16)	-8244	NM_004104	2194	Hs.83190	NM_004104	HPRD:02567	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
19-PTNLD28-TUMOR_peak_7827	chr1	164428859	164429069	+	13.66248	NA	Intergenic	L1PA2|LINE|L1	-99633	NM_001204963	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_27593	chr13	28527903	28528324	+	13.66248	NA	Intergenic	CpG	8770	NR_002162	432369	Hs.574118	NR_002162	ENSG00000180389	ATP5EP2	-	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_98428	chr8	41841665	41842001	+	13.66248	NA	intron (NM_001099413, intron 4 of 17)	MLT1F|LTR|ERVL-MaLR	67672	NM_006766	7994	Hs.491577	NM_006766	HPRD:03244	KAT6A	MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220	K(lysine) acetyltransferase 6A	protein-coding
19-PTNLD28-TUMOR_peak_10274	chr1	223341438	223341562	+	13.66248	NA	Intergenic	L1PA3|LINE|L1	-24876	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_69650	chr3	108563723	108564152	+	13.66248	NA	intron (NM_016388, intron 3 of 5)	AT_rich|Low_complexity|Low_complexity	22306	NM_016388	50852	Hs.138701	NM_016388	HPRD:05392	TRAT1	TCRIM|TRIM	T cell receptor associated transmembrane adaptor 1	protein-coding
19-PTNLD28-TUMOR_peak_58874	chr2	233230353	233230805	+	13.66248	NA	Intergenic	Intergenic	-12769	NM_001632	250	Hs.284255	NM_001632	ENSG00000163283	ALPP	ALP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
19-PTNLD28-TUMOR_peak_67425	chr3	32543673	32544341	+	13.66248	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	396	NM_017801	54918	Hs.380627	NM_017801	HPRD:06987	CMTM6	CKLFSF6|PRO2219	CKLF-like MARVEL transmembrane domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_108478	chrX	57619299	57619542	+	13.66248	NA	exon (NM_007157, exon 1 of 1)	exon (NM_007157, exon 1 of 1)	1151	NM_007157	158586	Hs.156257	NM_007157	HPRD:11777	ZXDB	ZNF905|dJ83L6.1	zinc finger, X-linked, duplicated B	protein-coding
19-PTNLD28-TUMOR_peak_9070	chr1	197890593	197890797	+	13.66248	NA	exon (NM_020204, exon 3 of 5)	exon (NM_020204, exon 3 of 5)	4178	NM_020204	56956	Hs.442578	NM_020204	HPRD:07299	LHX9	-	LIM homeobox 9	protein-coding
19-PTNLD28-TUMOR_peak_11784	chr10	5083103	5083260	+	13.66248	NA	Intergenic	HERVK13-int|LTR|ERVK	-7777	NM_001253908	8644	Hs.78183	NM_003739	HPRD:04911	AKR1C3	DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS	aldo-keto reductase family 1, member C3	protein-coding
19-PTNLD28-TUMOR_peak_99428	chr8	86986700	86986917	+	13.66248	NA	Intergenic	Intergenic	95043	NM_033126	85481	Hs.680136	NM_033126	HPRD:15192	PSKH2	-	protein serine kinase H2	protein-coding
19-PTNLD28-TUMOR_peak_69635	chr3	108190866	108191321	+	13.66248	NA	intron (NM_014981, intron 13 of 41)	intron (NM_014981, intron 13 of 41)	57076	NM_014981	22989	Hs.731060	NM_014981	ENSG00000144821	MYH15	-	myosin, heavy chain 15	protein-coding
19-PTNLD28-TUMOR_peak_39553	chr17	145901	146397	+	13.66248	NA	intron (NM_001190411, intron 4 of 8)	intron (NM_001190411, intron 4 of 8)	-34847	NM_001242780	100506388	Hs.627744	NM_001242780		LOC100506388	-	uncharacterized LOC100506388	protein-coding
19-PTNLD28-TUMOR_peak_458	chr1	7634445	7634608	+	13.66248	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-196803	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_43048	chr17	65318616	65318745	+	13.66248	NA	Intergenic	LTR9|LTR|ERV1	44041	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding
19-PTNLD28-TUMOR_peak_97594	chr8	22437500	22437720	+	13.66119	NA	promoter-TSS (NM_198042)	promoter-TSS (NM_198042)	-377	NM_198042	64236	Hs.632034	NM_021630	HPRD:17831	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2 (mystique)	protein-coding
19-PTNLD28-TUMOR_peak_35246	chr15	91498361	91498572	+	13.65643	NA	intron (NM_001017919, intron 1 of 7)	CpG	360	NM_033544	91433	Hs.655895	NM_033544	HPRD:18706	RCCD1	-	RCC1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_11559	chr1	249120120	249120287	+	13.65643	NA	promoter-TSS (NR_036070)	promoter-TSS (NR_036070)	-49	NM_030645	80851	Hs.298573	NM_030645	HPRD:13887	SH3BP5L	-	SH3-binding domain protein 5-like	protein-coding
19-PTNLD28-TUMOR_peak_21524	chr11	118777841	118778024	+	13.65333	NA	intron (NM_182557, intron 3 of 7)	intron (NM_182557, intron 3 of 7)	-3485	NR_039713	100616376		NR_039713	miRBase:MI0016854	MIR4492	-	microRNA 4492	ncRNA
19-PTNLD28-TUMOR_peak_42705	chr17	58220365	58220536	+	13.65294	NA	Intergenic	Intergenic	-6852	NM_000717	762	Hs.89485	NM_000717	HPRD:00261	CA4	CAIV|Car4|RP17	carbonic anhydrase IV	protein-coding
19-PTNLD28-TUMOR_peak_109983	chrX	153687559	153687694	+	13.65294	NA	intron (NM_017514, intron 1 of 32)	intron (NM_017514, intron 1 of 32)	1005	NM_017514	55558	Hs.632839	NM_017514	HPRD:02062	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
19-PTNLD28-TUMOR_peak_57809	chr2	202084881	202085216	+	13.65294	NA	3' UTR (NM_032976, exon 9 of 9)	3' UTR (NM_032976, exon 9 of 9)	-13118	NM_033355	841	Hs.599762	NM_001228	HPRD:03459	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_60815	chr20	35236365	35236523	+	13.65032	NA	intron (NR_026562, intron 3 of 4)	intron (NR_026562, intron 3 of 4)	2307	NR_026562	55969	Hs.584985	NM_018840	HPRD:12761	C20orf24	RIP5	chromosome 20 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_56081	chr2	141032542	141032713	+	13.64085	NA	intron (NM_018557, intron 84 of 90)	LTR3B_|LTR|ERVK	1377733	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_55356	chr2	121233729	121233941	+	13.64085	NA	Intergenic	Intergenic	-9910	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_41102	chr17	34127046	34127200	+	13.64085	NA	Intergenic	Intergenic	-4412	NR_111988	79148	Hs.380710	NM_024302	HPRD:07464	MMP28	EPILYSIN|MM28|MMP-25|MMP-28|MMP25	matrix metallopeptidase 28	protein-coding
19-PTNLD28-TUMOR_peak_106413	chr9	132805686	132805916	+	13.64085	NA	promoter-TSS (NM_015033)	promoter-TSS (NM_015033)	-328	NM_015033	23048	Hs.189409	NM_015033	HPRD:10446	FNBP1	FBP17	formin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_1218	chr1	19615176	19615584	+	13.64085	NA	promoter-TSS (NM_012067)	promoter-TSS (NM_012067)	-100	NM_012067	22977	Hs.6980	NM_012067		AKR7A3	AFAR2	aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase)	protein-coding
19-PTNLD28-TUMOR_peak_21370	chr11	116298618	116299335	+	13.64085	NA	Intergenic	Intergenic	344738	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_71584	chr3	148939802	148939977	+	13.64085	NA	promoter-TSS (NM_000096)	promoter-TSS (NM_000096)	-57	NR_046371	1356	Hs.558314	NM_000096	HPRD:00317	CP	CP-2	ceruloplasmin (ferroxidase)	protein-coding
19-PTNLD28-TUMOR_peak_58846	chr2	232571092	232571346	+	13.64060	NA	Intergenic	CpG	-2016	NM_002823	5757	Hs.459927	NM_002823	HPRD:01778	PTMA	TMSA	prothymosin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_43944	chr17	79174706	79174851	+	13.63577	NA	intron (NM_001009811, intron 7 of 24)	L1ME2|LINE|L1	21973	NM_001009811	22994	Hs.514578	NM_014984	HPRD:16532	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131kDa	protein-coding
19-PTNLD28-TUMOR_peak_101435	chr8	142046249	142046450	+	13.63577	NA	Intergenic	Intergenic	-34937	NM_001199649	5747	Hs.395482	NM_005607	HPRD:02859	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_42245	chr17	48530091	48530266	+	13.63577	NA	intron (NM_001288968, intron 2 of 16)	intron (NM_001288968, intron 2 of 16)	-15512	NR_110232	80221	Hs.288959	NM_025149	HPRD:13380	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_90341	chr6	159592178	159592304	+	13.63577	NA	intron (NM_032532, intron 1 of 22)	intron (NM_032532, intron 1 of 22)	-1202	NR_121668	101929122	Hs.134215	NR_121668		LOC101929122	-	uncharacterized LOC101929122	ncRNA
19-PTNLD28-TUMOR_peak_90085	chr6	152238085	152238268	+	13.63577	NA	intron (NM_001291230, intron 4 of 8)	intron (NM_001291230, intron 4 of 8)	109362	NM_000125	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_50667	chr1_gl000192_random	232241	232391	+	13.63577	NA	intron (NR_103556, intron 17 of 45)	L1HS|LINE|L1	175194	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_65289	chr22	36002843	36002991	+	13.63577	NA	3' UTR (NM_005368, exon 3 of 3)	3' UTR (NM_005368, exon 3 of 3)	10467	NM_005368	4151	Hs.517586	NM_005368	HPRD:01170	MB	PVALB|myoglobgin	myoglobin	protein-coding
19-PTNLD28-TUMOR_peak_14157	chr10	72639899	72640024	+	13.63577	NA	3' UTR (NM_003901, exon 15 of 15)	3' UTR (NM_003901, exon 15 of 15)	8050	NM_001289797	5092	Hs.3192	NM_000281	HPRD:00523	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_52142	chr2	37605573	37605846	+	13.63577	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	33956	NM_012413	25797	Hs.79033	NM_012413	HPRD:06140	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_36723	chr16	21200106	21200294	+	13.63577	NA	Intergenic	Intergenic	25631	NM_003460	7783	Hs.73982	NM_003460	HPRD:01689	ZP2	ZPA|Zp-2	zona pellucida glycoprotein 2 (sperm receptor)	protein-coding
19-PTNLD28-TUMOR_peak_41628	chr17	41545530	41545864	+	13.63577	NA	Intergenic	Intergenic	-15637	NM_004941	1659	Hs.463105	NM_004941	HPRD:02672	DHX8	DDX8|HRH1|PRP22|PRPF22	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
19-PTNLD28-TUMOR_peak_51658	chr2	26522501	26522955	+	13.63326	NA	Intergenic	HERV15-int|LTR|ERV1	19189	NM_001145168	165082	Hs.631878	NM_153835	HPRD:11009	GPR113	PGR23|hGPCR37	G protein-coupled receptor 113	protein-coding
19-PTNLD28-TUMOR_peak_61543	chr20	46428001	46428247	+	13.63326	NA	Intergenic	LTR16C|LTR|ERVL	-12764	NM_198596	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_52447	chr2	43861883	43862269	+	13.62964	NA	Intergenic	MIR|SINE|MIR	-2363	NM_172069	130271	Hs.164162	NM_172069	HPRD:15149	PLEKHH2	PLEKHH1L	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding
19-PTNLD28-TUMOR_peak_48048	chr19	18433226	18433376	+	13.62653	NA	intron (NM_012321, intron 1 of 4)	intron (NM_012321, intron 1 of 4)	700	NM_012321	25804	Hs.515255	NM_012321	HPRD:06284	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_86206	chr6	27113777	27114014	+	13.62179	NA	promoter-TSS (NM_080596)	promoter-TSS (NM_080596)	742	NM_080593	85236	Hs.437275	NM_080593	HPRD:13658	HIST1H2BK	H2B/S|H2BFAiii|H2BFT|H2BK	histone cluster 1, H2bk	protein-coding
19-PTNLD28-TUMOR_peak_86006	chr6	24933074	24933279	+	13.62072	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	3104	NM_001286445	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_43864	chr17	78074910	78075074	+	13.62072	NA	promoter-TSS (NM_000152)	promoter-TSS (NM_000152)	-363	NM_001079804	2548	Hs.1437	NM_000152	HPRD:06006	GAA	LYAG	glucosidase, alpha; acid	protein-coding
19-PTNLD28-TUMOR_peak_11569	chr1	249168302	249168598	+	13.61944	NA	Intergenic	tRNA-Glu-GAG_|tRNA|tRNA	-15135	NM_001193328	55657	Hs.377705	NM_017865	HPRD:07922	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
19-PTNLD28-TUMOR_peak_80213	chr5	61708915	61709074	+	13.61944	NA	intron (NM_016338, intron 1 of 29)	CpG	421	NM_016338	51194	Hs.482269	NM_016338	HPRD:10003	IPO11	RanBP11	importin 11	protein-coding
19-PTNLD28-TUMOR_peak_52397	chr2	43328021	43328321	+	13.61944	NA	Intergenic	CpG	-61489	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_102394	chr9	19630896	19631109	+	13.61944	NA	intron (NM_020344, intron 1 of 9)	intron (NM_020344, intron 1 of 9)	156015	NM_001193288	25769	Hs.283014	NM_020344	HPRD:15351	SLC24A2	NCKX2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_75637	chr4	73178975	73179115	+	13.61944	NA	intron (NM_014243, intron 12 of 21)	intron (NM_014243, intron 12 of 21)	255471	NM_014243	9508	Hs.590919	NM_014243	HPRD:06893	ADAMTS3	ADAMTS-4	ADAM metallopeptidase with thrombospondin type 1 motif, 3	protein-coding
19-PTNLD28-TUMOR_peak_63970	chr21	45993823	45994184	+	13.61944	NA	exon (NM_198687, exon 1 of 1)	exon (NM_198687, exon 1 of 1)	397	NM_198687	386672	Hs.567901	NM_198687	HPRD:11190	KRTAP10-4	KAP10.4|KAP18-4|KRTAP10.4|KRTAP18-4|KRTAP18.4	keratin associated protein 10-4	protein-coding
19-PTNLD28-TUMOR_peak_50574	chr19	58906276	58906540	+	13.61944	NA	TTS (NM_001009)	TTS (NM_001009)	-1049	NM_001195135	646862	Hs.728121	NM_001195135	ENSG00000269855	LOC646862	-	uncharacterized LOC646862	protein-coding
19-PTNLD28-TUMOR_peak_99100	chr8	69242773	69243039	+	13.61940	NA	promoter-TSS (NM_052958)	promoter-TSS (NM_052958)	-51	NM_052958	116328	Hs.491941	NM_052958	HPRD:18281	C8orf34	VEST-1|VEST1	chromosome 8 open reading frame 34	protein-coding
19-PTNLD28-TUMOR_peak_47354	chr19	11768203	11768424	+	13.61940	NA	Intergenic	LTR22A|LTR|ERVK	-16500	NR_028594	401898	Hs.672384	NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89756	chr6	142891354	142891512	+	13.61940	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	67540	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
19-PTNLD28-TUMOR_peak_49630	chr19	48202727	48202871	+	13.61940	NA	intron (NM_015711, intron 14 of 14)	intron (NM_015711, intron 14 of 14)	-13802	NM_014601	30846	Hs.744963	NM_014601	HPRD:10434	EHD2	PAST2	EH-domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_19679	chr11	69458088	69458316	+	13.61776	NA	intron (NM_053056, intron 2 of 4)	CpG-4502	2329	NM_053056	595	Hs.523852	NM_053056	HPRD:01346	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
19-PTNLD28-TUMOR_peak_9598	chr1	205216672	205217044	+	13.61678	NA	intron (NM_001297611, intron 1 of 3)	intron (NM_001297611, intron 1 of 3)	1234	NM_001297611	9911	Hs.6360	NM_014858	HPRD:11040	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
19-PTNLD28-TUMOR_peak_18458	chr11	47290538	47290726	+	13.61678	NA	promoter-TSS (NM_130473)	promoter-TSS (NM_130473)	-295	NM_130470	8567	Hs.82548	NM_003682	HPRD:04664	MADD	DENN|IG20|RAB3GEP	MAP-kinase activating death domain	protein-coding
19-PTNLD28-TUMOR_peak_84289	chr5	176736808	176736980	+	13.61501	NA	intron (NM_001142935, intron 4 of 5)	intron (NM_001142935, intron 4 of 5)	2398	NM_031300	83463	Hs.743332	NM_031300	HPRD:14791	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
19-PTNLD28-TUMOR_peak_66840	chr3	14593632	14593992	+	13.61501	NA	Intergenic	Intergenic	-11962	NM_001080423	80852	Hs.517819	NM_001080423		GRIP2	-	glutamate receptor interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_17839	chr11	32333032	32333221	+	13.60445	NA	Intergenic	Intergenic	119237	NM_001198552	7490	Hs.591980	NM_000378	HPRD:06163	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
19-PTNLD28-TUMOR_peak_35655	chr16	778221	778611	+	13.60445	NA	exon (NM_001290137, exon 5 of 9)	exon (NM_001290137, exon 5 of 9)	1170	NM_032304	84264	Hs.124015	NM_032304	HPRD:17087	HAGHL	-	hydroxyacylglutathione hydrolase-like	protein-coding
19-PTNLD28-TUMOR_peak_61772	chr20	48808875	48809030	+	13.60355	NA	promoter-TSS (NR_125739)	promoter-TSS (NR_125739)	-346	NR_125739	101927559	Hs.442486	NR_125739		CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26769	chr12	122149675	122149831	+	13.59944	NA	promoter-TSS (NM_001080825)	promoter-TSS (NM_001080825)	-905	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
19-PTNLD28-TUMOR_peak_11584	chr10	179536	179670	+	13.59944	NA	promoter-TSS (NM_001202465)	promoter-TSS (NM_001202465)	-802	NM_006624	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_101120	chr8	134306627	134306776	+	13.59754	NA	intron (NM_001258433, intron 1 of 14)	intron (NM_001258433, intron 1 of 14)	2846	NM_001258432	10397	Hs.372914	NM_006096	HPRD:05586	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_76886	chr4	122716900	122717148	+	13.59715	NA	Intergenic	LTR3B_|LTR|ERVK	-5448	NM_005033	5393	Hs.91728	NM_005033	HPRD:07315	EXOSC9	PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
19-PTNLD28-TUMOR_peak_50934	chr2	8802780	8802943	+	13.59715	NA	Intergenic	Intergenic	19130	NR_110153	100506299	Hs.439031	NR_110153		ID2-AS1	-	ID2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_94449	chr7	101345787	101345971	+	13.59715	NA	Intergenic	L2b|LINE|L2	-73303	NM_138403	93408	Hs.247831	NM_138403	HPRD:17620	MYL10	MYLC2PL|PLRLC	myosin, light chain 10, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_70204	chr3	122992198	122992522	+	13.59715	NA	3' UTR (NM_012430, exon 7 of 7)	3' UTR (NM_012430, exon 7 of 7)	71586	NM_012430	26984	Hs.477361	NM_012430		SEC22A	SEC22L2	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_3420	chr1	49931313	49931695	+	13.59715	NA	intron (NR_046839, intron 2 of 3)	intron (NR_046839, intron 2 of 3)	6253	NR_046839	100874313	Hs.551277	NR_046839		AGBL4-IT1	-	AGBL4 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_12356	chr10	22624355	22624510	+	13.59715	NA	Intergenic	CpG	-9942	NM_172242	9576	Hs.655170	NM_012443	HPRD:09305	SPAG6	CT141|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
19-PTNLD28-TUMOR_peak_15272	chr10	102973469	102973618	+	13.59715	NA	Intergenic	CpG	15174	NM_006562	10660	Hs.37128	NM_006562		LBX1	HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_2297	chr1	35110901	35111204	+	13.59715	NA	Intergenic	Intergenic	-109596	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_59500	chr20	2280042	2280229	+	13.59715	NA	intron (NM_003245, intron 1 of 12)	intron (NM_003245, intron 1 of 12)	3522	NM_003245	7053	Hs.2022	NM_003245	HPRD:02584	TGM3	TGE	transglutaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_71640	chr3	149321361	149321503	+	13.59715	NA	intron (NM_015472, intron 2 of 6)	intron (NM_015472, intron 2 of 6)	54380	NM_001168280	25937	Hs.477921	NM_015472	HPRD:09580	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_68520	chr3	56929228	56929370	+	13.59715	NA	intron (NM_001128615, intron 3 of 12)	intron (NM_001128615, intron 3 of 12)	21200	NM_001289698	50650	Hs.476402	NM_019555	HPRD:12480	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_7974	chr1	167237176	167237327	+	13.59715	NA	intron (NM_001198786, intron 1 of 14)	intron (NM_001198786, intron 1 of 14)	47128	NR_037163	5451	Hs.283402	NM_002697	HPRD:01250	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_99850	chr8	103395432	103395725	+	13.59715	NA	intron (NM_015902, intron 1 of 58)	HAL1|LINE|L1	29339	NM_001282873	51366	Hs.492445	NM_015902	HPRD:06436	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
19-PTNLD28-TUMOR_peak_89123	chr6	111936509	111936684	+	13.59715	NA	Intergenic	Intergenic	-9119	NM_147686	10758	Hs.561514	NM_147200	HPRD:06129	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18663	chr11	57388015	57388210	+	13.59715	NA	Intergenic	Intergenic	-20559	NR_029673	406919		NR_029673	miRBase:MI0000448	MIR130A	MIRN130A|miRNA130A	microRNA 130a	ncRNA
19-PTNLD28-TUMOR_peak_106034	chr9	127029586	127030001	+	13.59715	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	9263	NM_001166168	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_63336	chr21	36180282	36180477	+	13.59715	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	62257	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	LINC01426	-	long intergenic non-protein coding RNA 1426	ncRNA
19-PTNLD28-TUMOR_peak_75639	chr4	73185491	73185873	+	13.59715	NA	intron (NM_014243, intron 7 of 21)	intron (NM_014243, intron 7 of 21)	248834	NM_014243	9508	Hs.590919	NM_014243	HPRD:06893	ADAMTS3	ADAMTS-4	ADAM metallopeptidase with thrombospondin type 1 motif, 3	protein-coding
19-PTNLD28-TUMOR_peak_57324	chr2	183391868	183392016	+	13.59715	NA	Intergenic	AluJb|SINE|Alu	-4370	NM_001258312	5136	Hs.191046	NM_005019	HPRD:01387	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_29999	chr14	39486821	39486930	+	13.59715	NA	Intergenic	L1PA4|LINE|L1	85562	NM_006364	10484	Hs.272927	NM_006364	HPRD:06714	SEC23A	CLSD	Sec23 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_81783	chr5	121647867	121648195	+	13.59715	NA	intron (NM_005460, intron 1 of 10)	CpG	211	NM_001242935	9627	Hs.426463	NM_005460	HPRD:04804	SNCAIP	SYPH1|Sph1	synuclein, alpha interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_57607	chr2	196965982	196966225	+	13.59715	NA	Intergenic	Intergenic	-32567	NM_018897	56171	Hs.97403	NM_018897	HPRD:10914	DNAH7	-	dynein, axonemal, heavy chain 7	protein-coding
19-PTNLD28-TUMOR_peak_10113	chr1	219834521	219834663	+	13.59715	NA	Intergenic	Intergenic	-212027	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_9307	chr1	202102163	202102417	+	13.59457	NA	TTS (NM_138795)	TTS (NM_138795)	10261	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
19-PTNLD28-TUMOR_peak_68353	chr3	52560129	52560677	+	13.59343	NA	intron (NM_001134231, intron 10 of 13)	intron (NM_001134231, intron 10 of 13)	7390	NM_001134231	64943	Hs.84753	NM_022908	HPRD:07770	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28787	chr13	99095718	99095866	+	13.59343	NA	intron (NM_005766, intron 24 of 26)	intron (NM_005766, intron 24 of 26)	78587	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_86521	chr6	30804282	30804426	+	13.59343	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-46036	NM_001297652	780	Hs.631988	NM_001954	HPRD:02678	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_103853	chr9	75207740	75207903	+	13.58955	NA	intron (NM_138691, intron 2 of 23)	intron (NM_138691, intron 2 of 23)	71104	NM_138691	117531	Hs.670211	NM_138691	HPRD:05988	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4104	chr1	65414888	65415103	+	13.58955	NA	intron (NM_002227, intron 1 of 24)	intron (NM_002227, intron 1 of 24)	17192	NM_002227	3716	Hs.207538	NM_002227	HPRD:00992	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_44298	chr18	2917431	2917558	+	13.58955	NA	3' UTR (NM_014646, exon 20 of 20)	3' UTR (NM_014646, exon 20 of 20)	29127	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine-rich domain (CHORD) containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_75628	chr4	72738759	72739113	+	13.58955	NA	Intergenic	Intergenic	-67699	NM_001204306	2638	Hs.418497	NM_000583	HPRD:00749	GC	DBP|DBP/GC|GRD3|HEL-S-51|VDBG|VDBP	group-specific component (vitamin D binding protein)	protein-coding
19-PTNLD28-TUMOR_peak_102948	chr9	36585272	36585437	+	13.58955	NA	intron (NM_001256688, intron 3 of 15)	AluSz|SINE|Alu	12495	NR_046337	9833	Hs.184339	NM_014791	HPRD:06119	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
19-PTNLD28-TUMOR_peak_28735	chr13	96392501	96393022	+	13.58955	NA	intron (NM_006260, intron 4 of 11)	L1PA2|LINE|L1	63368	NM_006260	5611	Hs.59214	NM_006260	HPRD:03114	DNAJC3	ERdj6|HP58|P58|P58IPK|PRKRI	DnaJ (Hsp40) homolog, subfamily C, member 3	protein-coding
19-PTNLD28-TUMOR_peak_31035	chr14	69942000	69942136	+	13.58955	NA	Intergenic	Intergenic	-9403	NM_001161498	400224	Hs.509796	NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding
19-PTNLD28-TUMOR_peak_45759	chr18	48346395	48346566	+	13.58955	NA	promoter-TSS (NM_031939)	promoter-TSS (NM_031939)	-46	NM_031939	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_12548	chr10	26911407	26911579	+	13.58955	NA	Intergenic	Intergenic	-20544	NR_026794	731789	Hs.178186	NR_026794	ENSG00000231976	LINC00202-2	-	long intergenic non-protein coding RNA 202-2	ncRNA
19-PTNLD28-TUMOR_peak_79140	chr5	16965058	16965221	+	13.58955	NA	Intergenic	Intergenic	-28754	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_17604	chr11	19925143	19925337	+	13.58955	NA	intron (NM_182964, intron 6 of 37)	intron (NM_182964, intron 6 of 37)	-118862	NM_001111019	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_99194	chr8	73794333	73794499	+	13.58955	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	-126681	NM_017489	7013	Hs.442707	NM_003218	HPRD:02975	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor (NIMA-interacting) 1	protein-coding
19-PTNLD28-TUMOR_peak_29307	chr14	20730889	20731164	+	13.58955	NA	Intergenic	Intergenic	20075	NM_001004479	390442	Hs.553767	NM_001004479	HPRD:14902	OR11H4	OR14-36	olfactory receptor, family 11, subfamily H, member 4	protein-coding
19-PTNLD28-TUMOR_peak_594	chr1	9350613	9350854	+	13.58955	NA	Intergenic	Intergenic	-2208	NM_025106	80176	Hs.8261	NM_025106	HPRD:18106	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_108545	chrX	63477930	63478104	+	13.58955	NA	Intergenic	L1PA3|LINE|L1	-27506	NM_130388	142689	Hs.56281	NM_130388	HPRD:06451	ASB12	-	ankyrin repeat and SOCS box containing 12	protein-coding
19-PTNLD28-TUMOR_peak_16084	chr10	125343684	125343846	+	13.58955	NA	Intergenic	Intergenic	-82106	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
19-PTNLD28-TUMOR_peak_109675	chrX	143268335	143268618	+	13.58955	NA	Intergenic	Intergenic	301303	NR_121210	389898	Hs.585177	NM_001012989	HPRD:18504	UBE2NL	Li174	ubiquitin-conjugating enzyme E2N-like	protein-coding
19-PTNLD28-TUMOR_peak_87757	chr6	45690719	45690932	+	13.58899	NA	Intergenic	Intergenic	214509	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_49125	chr19	41410891	41411061	+	13.58899	NA	Intergenic	Intergenic	14245	NR_040249	22952	Hs.738699	NR_040249	ENSG00000130612	CYP2G1P	CYP2G1|CYP2G2P|CYP2GP1	cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15453	chr10	105647888	105648030	+	13.58899	NA	intron (NM_024928, intron 9 of 9)	intron (NM_024928, intron 9 of 9)	30086	NM_024928	79991	Hs.62314	NM_024928		OBFC1	AAF-44|AAF44|RPA-32|STN1|bA541N10.2	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
19-PTNLD28-TUMOR_peak_39131	chr16	84985937	84986244	+	13.58899	NA	Intergenic	Intergenic	59051	NM_017740	55625	Hs.461610	NM_017740	HPRD:15722	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger, DHHC-type containing 7	protein-coding
19-PTNLD28-TUMOR_peak_44134	chr17	80693010	80693224	+	13.58899	NA	promoter-TSS (NM_022158)	promoter-TSS (NM_022158)	-335	NM_022158	64122	Hs.151135	NM_022158	HPRD:16336	FN3K	-	fructosamine 3 kinase	protein-coding
19-PTNLD28-TUMOR_peak_14962	chr10	95228377	95228504	+	13.58899	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	13634	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_90742	chr7	511609	511895	+	13.58899	NA	Intergenic	Intergenic	47729	NM_002607	5154	Hs.535898	NM_002607	HPRD:01424	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_1967	chr1	30853288	30853434	+	13.58899	NA	Intergenic	LTR41|LTR|ERVL	-338258	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18111	chr11	36475396	36475510	+	13.58455	NA	intron (NM_001160168, intron 5 of 5)	L2b|LINE|L2	52906	NM_001160169	79899	Hs.19987	NM_024841	HPRD:07854	PRR5L	PROTOR2	proline rich 5 like	protein-coding
19-PTNLD28-TUMOR_peak_70618	chr3	128151200	128151417	+	13.58455	NA	Intergenic	L2a|LINE|L2	-31129	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23147	chr12	13129449	13129597	+	13.58455	NA	intron (NM_015987, intron 3 of 3)	intron (NM_015987, intron 3 of 3)	-3248	NR_038920	100506314	Hs.659383	NR_038920	ENSG00000247498	LOC100506314	-	uncharacterized LOC100506314	ncRNA
19-PTNLD28-TUMOR_peak_44300	chr18	2979222	2979382	+	13.58299	NA	intron (NM_014646, intron 1 of 19)	intron (NM_014646, intron 1 of 19)	32643	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_55614	chr2	129316792	129317001	+	13.58268	NA	Intergenic	L2c|LINE|L2	-240725	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_14751	chr10	88726462	88726596	+	13.58073	NA	Intergenic	Intergenic	-1659	NM_006829	10974	Hs.642660	NM_006829	HPRD:16575	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
19-PTNLD28-TUMOR_peak_46711	chr19	3177271	3177422	+	13.57810	NA	Intergenic	Intergenic	-1390	NM_003775	8698	Hs.662006	NM_003775	HPRD:04779	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_106084	chr9	128091204	128091617	+	13.57810	NA	intron (NM_015635, intron 10 of 26)	(GGGAGA)n|Simple_repeat|Simple_repeat	30241	NM_001282681	26130	Hs.495134	NM_015635	HPRD:10886	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_71857	chr3	155278481	155278682	+	13.57810	NA	intron (NM_014996, intron 7 of 21)	L2c|LINE|L2	115524	NM_001130961	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_89113	chr6	111798865	111799021	+	13.57810	NA	intron (NM_001286431, intron 2 of 34)	L2b|LINE|L2	-5732	NR_034109	643749	Hs.486228	NR_034108	ENSG00000231889	TRAF3IP2-AS1	C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2	TRAF3IP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1913	chr1	29535830	29535956	+	13.57810	NA	intron (NM_001024732, intron 3 of 9)	intron (NM_001024732, intron 3 of 9)	21577	NM_001024732	51102	Hs.183646	NM_016011	HPRD:12192	MECR	CGI-63|FASN2B|NRBF1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding
19-PTNLD28-TUMOR_peak_52387	chr2	43259413	43259814	+	13.57810	NA	intron (NR_110585, intron 3 of 5)	intron (NR_110585, intron 3 of 5)	7069	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_35693	chr16	1087132	1087285	+	13.57810	NA	Intergenic	Intergenic	-35548	NM_001172560	6755	Hs.449840	NM_001053	HPRD:01677	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_105015	chr9	103278494	103278632	+	13.57810	NA	intron (NM_003692, intron 4 of 9)	intron (NM_003692, intron 4 of 9)	43043	NM_003692	8577	Hs.598100	NM_003692	HPRD:04570	TMEFF1	C9orf2|CT120.1|H7365|TR-1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_15986	chr10	122708501	122708955	+	13.57810	NA	intron (NR_049879, intron 3 of 4)	CpG	-98037	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72689	chr3	183013707	183013876	+	13.57810	NA	intron (NM_015078, intron 12 of 29)	intron (NM_015078, intron 12 of 29)	42759	NM_032047	84002	Hs.718506	NM_032047	HPRD:12511	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_84120	chr5	173744355	173744486	+	13.57810	NA	Intergenic	Intergenic	-18937	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_92157	chr7	42052626	42052857	+	13.57810	NA	intron (NM_000168, intron 10 of 14)	intron (NM_000168, intron 10 of 14)	223877	NM_000168	2737	Hs.21509	NM_000168	HPRD:01313	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_64849	chr22	25960425	25960760	+	13.57810	NA	promoter-TSS (NM_005160)	promoter-TSS (NM_005160)	-269	NM_005160	157	Hs.657494	NM_005160	HPRD:00183	ADRBK2	BARK2|GRK3	adrenergic, beta, receptor kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_23195	chr12	14098661	14098864	+	13.57810	NA	intron (NM_000834, intron 1 of 12)	intron (NM_000834, intron 1 of 12)	34260	NM_000834	2904	Hs.654430	NM_000834		GRIN2B	GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	protein-coding
19-PTNLD28-TUMOR_peak_42653	chr17	57642816	57643269	+	13.57810	NA	exon (NM_001166301, exon 1 of 17)	exon (NM_001166301, exon 1 of 17)	156	NM_024612	79665	Hs.29403	NM_024612	HPRD:06346	DHX40	DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding
19-PTNLD28-TUMOR_peak_8262	chr1	173374992	173375164	+	13.57810	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	71216	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_72560	chr3	178577775	178578030	+	13.57810	NA	Intergenic	L1PA2|LINE|L1	211754	NM_152240	64393	Hs.371609	NM_022470	HPRD:07343	ZMAT3	PAG608|WIG-1|WIG1	zinc finger, matrin-type 3	protein-coding
19-PTNLD28-TUMOR_peak_101603	chr8	144329629	144329935	+	13.57347	NA	5' UTR (NM_001271156, exon 1 of 3)	5' UTR (NM_001271156, exon 1 of 3)	684	NM_173832	286128	Hs.668016	NM_173832	HPRD:08244	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_12305	chr10	21483553	21483961	+	13.57270	NA	Intergenic	Intergenic	20526	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18320	chr11	45311058	45311208	+	13.57270	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-3249	NM_001247987	57586	Hs.436643	NM_020826	HPRD:12128	SYT13	-	synaptotagmin XIII	protein-coding
19-PTNLD28-TUMOR_peak_42243	chr17	48518081	48518251	+	13.57270	NA	intron (NM_001288968, intron 2 of 16)	intron (NM_001288968, intron 2 of 16)	14647	NM_001288969	80221	Hs.288959	NM_025149	HPRD:13380	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_109868	chrX	152721757	152721907	+	13.57270	NA	intron (NR_073156, intron 8 of 12)	intron (NR_073156, intron 8 of 12)	-9887	NM_080701	11219	Hs.644635	NM_080699	HPRD:02299	TREX2	-	three prime repair exonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_47627	chr19	14445039	14445278	+	13.57270	NA	Intergenic	AluY|SINE|Alu	-46798	NM_078481	976	Hs.466039	NM_001784	HPRD:03130	CD97	TM7LN1	CD97 molecule	protein-coding
19-PTNLD28-TUMOR_peak_15264	chr10	102826383	102826569	+	13.57270	NA	Intergenic	CpG	5477	NM_030929	81621	Hs.534859	NM_030929		KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding
19-PTNLD28-TUMOR_peak_39858	chr17	4890275	4890487	+	13.57270	NA	5' UTR (NM_001171168, exon 1 of 22)	5' UTR (NM_001171168, exon 1 of 22)	284	NM_001171167	23125	Hs.632242	NM_015099	HPRD:13002	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
19-PTNLD28-TUMOR_peak_73952	chr4	3076864	3077338	+	13.57219	NA	promoter-TSS (NR_045414)	promoter-TSS (NR_045414)	-860	NR_045414	100750326	Hs.575112	NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_101839	chr8	146276955	146277242	+	13.57219	NA	promoter-TSS (NM_023080)	promoter-TSS (NM_023080)	-726	NM_023080	65265	Hs.169615	NM_023080	HPRD:07951	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_38325	chr16	67313137	67313438	+	13.57009	NA	promoter-TSS (NM_001129729)	promoter-TSS (NM_001129729)	-202	NM_001129729	25894	Hs.188781	NM_015432	HPRD:10890	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding
19-PTNLD28-TUMOR_peak_12554	chr10	27148990	27149311	+	13.56456	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	866	NM_001012750	10006	Hs.508148	NM_005470	HPRD:04336	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl-interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_438	chr1	7447628	7447838	+	13.56055	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-383596	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_35182	chr15	90641390	90641633	+	13.55718	NA	intron (NM_002168, intron 1 of 10)	intron (NM_002168, intron 1 of 10)	2342	NM_001289910	3418	Hs.596461	NM_002168	HPRD:00973	IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_61254	chr20	43280279	43281006	+	13.55409	NA	promoter-TSS (NM_000022)	promoter-TSS (NM_000022)	-266	NM_000022	100	Hs.654536	NM_000022	HPRD:00038	ADA	-	adenosine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_87270	chr6	38765282	38765439	+	13.55409	NA	intron (NM_001206927, intron 21 of 92)	LTR30|LTR|ERV1	82243	NM_001206927	1769	Hs.520106	NM_001371	HPRD:04515	DNAH8	ATPase|hdhc9	dynein, axonemal, heavy chain 8	protein-coding
19-PTNLD28-TUMOR_peak_6504	chr1	147750069	147750462	+	13.54896	NA	intron (NR_102404, intron 17 of 18).2	AluJb|SINE|Alu	-30923	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
19-PTNLD28-TUMOR_peak_63646	chr21	42519138	42519530	+	13.54851	NA	intron (NR_024100, intron 1 of 1)	intron (NR_024100, intron 1 of 1)	657	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_42122	chr17	47467913	47468117	+	13.54851	NA	Intergenic	Intergenic	24205	NM_001281496	5245	Hs.514303	NM_002634	HPRD:01454	PHB	HEL-215|HEL-S-54e|PHB1	prohibitin	protein-coding
19-PTNLD28-TUMOR_peak_54658	chr2	105910268	105910734	+	13.54851	NA	intron (NM_004257, intron 4 of 11)	intron (NM_004257, intron 4 of 11)	35670	NM_001142621	9392	Hs.446350	NM_004257	HPRD:06948	TGFBRAP1	TRAP-1|TRAP1	transforming growth factor, beta receptor associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102873	chr9	35728282	35728461	+	13.54697	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	-3946	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_43965	chr17	79397067	79397311	+	13.54669	NA	intron (NM_001291324, intron 1 of 27)	intron (NM_001291324, intron 1 of 27)	21025	NR_036152	100422944		NR_036152	miRBase:MI0014229	MIR3186	-	microRNA 3186	ncRNA
19-PTNLD28-TUMOR_peak_11833	chr10	5727221	5727454	+	13.54640	NA	intron (NM_017782, intron 1 of 20)	CpG	536	NM_017782	54906	Hs.610717	NM_017782	ENSG00000108021	FAM208B	C10orf18|bA318E3.2	family with sequence similarity 208, member B	protein-coding
19-PTNLD28-TUMOR_peak_61468	chr20	45592540	45592854	+	13.53990	NA	intron (NM_005244, intron 1 of 15)	MER112|DNA|hAT-Charlie	69434	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_101095	chr8	133905873	133906258	+	13.53716	NA	exon (NM_003235, exon 11 of 48)	exon (NM_003235, exon 11 of 48)	26860	NM_003235	7038	Hs.654591	NM_003235	HPRD:01782	TG	AITD3|TGN	thyroglobulin	protein-coding
19-PTNLD28-TUMOR_peak_2820	chr1	41788668	41788830	+	13.53716	NA	Intergenic	Intergenic	-38854	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_30878	chr14	67993422	67993778	+	13.53716	NA	Intergenic	Intergenic	-6408	NM_020715	57475	Hs.594236	NM_020715	HPRD:17862	PLEKHH1	-	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_64438	chr22	20393430	20393801	+	13.53716	NA	intron (NR_003563, intron 5 of 14)	intron (NR_003563, intron 5 of 14)	5080	NR_003563	728233	Hs.592456	NR_003563	ENSG00000215513	PI4KAP1	-	phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_29557	chr14	24599757	24599937	+	13.53716	NA	promoter-TSS (NM_203402)	promoter-TSS (NM_203402)	-828	NM_203402	161247	Hs.128060	NM_203402	HPRD:17312	FITM1	FIT1	fat storage-inducing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49053	chr19	40697245	40697386	+	13.53716	NA	promoter-TSS (NM_002446)	promoter-TSS (NM_002446)	-336	NM_002446	4294	Hs.466743	NM_002446	HPRD:02533	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_68531	chr3	57112460	57112900	+	13.53716	NA	intron (NM_001128615, intron 1 of 12)	CpG	656	NM_001128615	50650	Hs.476402	NM_019555	HPRD:12480	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_3578	chr1	53908106	53908251	+	13.53716	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2485	NR_002314	163742	Hs.99394	NR_002314	ENSG00000236253	SLC25A3P1	-	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_49766	chr19	49361979	49362107	+	13.53716	NA	intron (NM_020904, intron 8 of 19)	intron (NM_020904, intron 8 of 19)	9841	NM_020904	57664	Hs.9469	NM_020904	HPRD:09683	PLEKHA4	PEPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding
19-PTNLD28-TUMOR_peak_100739	chr8	127446079	127446309	+	13.53716	NA	Intergenic	LTR8A|LTR|ERV1	108454	NR_125421	101927657	Hs.552133	NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
19-PTNLD28-TUMOR_peak_13286	chr10	45428215	45428451	+	13.53336	NA	intron (NM_001123376, intron 3 of 4)	intron (NM_001123376, intron 3 of 4)	21569	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_96854	chr8	636811	637001	+	13.53336	NA	intron (NM_207332, intron 3 of 5)	intron (NM_207332, intron 3 of 5)	44320	NM_207332	157697	Hs.655310	NM_207332	HPRD:14105	ERICH1	-	glutamate-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_64034	chr21	46675314	46675495	+	13.53336	NA	Intergenic	Intergenic	32407	NM_133635	23275	Hs.592164	NM_015227	HPRD:09846	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_60984	chr20	37434238	37434386	+	13.53336	NA	promoter-TSS (NM_001172735)	promoter-TSS (NM_001172735)	-36	NM_015568	26051	Hs.45719	NM_015568	HPRD:15168	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1, regulatory subunit 16B	protein-coding
19-PTNLD28-TUMOR_peak_34253	chr15	70289589	70289826	+	13.53336	NA	Intergenic	Intergenic	82100	NR_030714	693214		NR_030714		MIR629	MIRN629|hsa-mir-629	microRNA 629	ncRNA
19-PTNLD28-TUMOR_peak_54537	chr2	101767572	101767892	+	13.53336	NA	5' UTR (NM_001102426, exon 1 of 20)	5' UTR (NM_001102426, exon 1 of 20)	114	NM_001102426	11138	Hs.442657	NM_007063	HPRD:06752	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	TBC1 domain family, member 8 (with GRAM domain)	protein-coding
19-PTNLD28-TUMOR_peak_53181	chr2	66461163	66461543	+	13.53272	NA	Intergenic	LTR32|LTR|ERVL	124107	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_44241	chr18	1048042	1048235	+	13.53272	NA	Intergenic	Intergenic	142941	NM_001117	116	Hs.531719	NM_001117	HPRD:02369	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
19-PTNLD28-TUMOR_peak_53182	chr2	66561463	66561785	+	13.53272	NA	Intergenic	Intergenic	23836	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_14686	chr10	86522026	86522193	+	13.53272	NA	Intergenic	L1PA2|LINE|L1	337171	NM_001284242	54462	Hs.461988	NM_018999	HPRD:13832	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
19-PTNLD28-TUMOR_peak_100748	chr8	127522643	127522773	+	13.53272	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	48003	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_14501	chr10	79938807	79938991	+	13.53272	NA	Intergenic	Intergenic	-69483	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
19-PTNLD28-TUMOR_peak_43136	chr17	66539285	66539483	+	13.53272	NA	intron (NM_001243746, intron 6 of 11)	intron (NM_001243746, intron 6 of 11)	15184	NR_027751	54757	Hs.268874	NM_017565		FAM20A	AI1G|AIGFS|FP2747	family with sequence similarity 20, member A	protein-coding
19-PTNLD28-TUMOR_peak_48519	chr19	33166609	33166745	+	13.52845	NA	promoter-TSS (NM_032139)	promoter-TSS (NM_032139)	364	NM_207391	388531	Hs.528491	NM_207391	HPRD:16991	RGS9BP	PERRS|R9AP|RGS9	regulator of G protein signaling 9 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_38297	chr16	67204221	67204370	+	13.52845	NA	promoter-TSS (NM_001276319)	promoter-TSS (NM_001276319)	-105	NM_001276312	8996	Hs.513667	NM_003946	HPRD:05572	NOL3	ARC|FCM|MYP|NOP|NOP30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding
19-PTNLD28-TUMOR_peak_24177	chr12	50451140	50451556	+	13.52573	NA	promoter-TSS (NM_001095)	promoter-TSS (NM_001095)	-72	NR_046389	41	Hs.274361	NM_001095	HPRD:04182	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
19-PTNLD28-TUMOR_peak_38274	chr16	66981221	66981367	+	13.52573	NA	Intergenic	Intergenic	12920	NR_036684	8824	Hs.282975	NM_003869	HPRD:07062	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_53753	chr2	85203040	85203189	+	13.52571	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	4883	NM_020122	56888	Hs.654968	NM_020122	HPRD:13761	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_47017	chr19	8049426	8049667	+	13.52571	NA	intron (NM_001419, intron 2 of 5)	intron (NM_001419, intron 2 of 5)	20983	NM_001419	1994	Hs.184492	NM_001419	HPRD:16025	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_9762	chr1	206733428	206733597	+	13.52571	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	3020	NM_182665	83593	Hs.497579	NM_031437	HPRD:06117	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_110101	chrY	2129970	2130092	+	13.52069	NA	intron (NM_145177, intron 5 of 6).2	intron (NM_145177, intron 5 of 6).2	238549	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_107365	chrX	2179970	2180092	+	13.52069	NA	intron (NM_145177, intron 5 of 6)	intron (NM_145177, intron 5 of 6)	238549	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97942	chr8	28923722	28923908	+	13.52069	NA	TTS (NM_015254)	TTS (NM_015254)	175590	NM_024567	79618	Hs.563560	NM_024567	HPRD:07964	HMBOX1	HNF1LA|HOT1|PBHNF	homeobox containing 1	protein-coding
19-PTNLD28-TUMOR_peak_44789	chr18	19218494	19218675	+	13.52069	NA	Intergenic	Intergenic	26354	NM_006938	6632	Hs.464734	NM_006938	HPRD:03040	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide 16kDa	protein-coding
19-PTNLD28-TUMOR_peak_109188	chrX	110924728	110925055	+	13.52069	NA	promoter-TSS (NM_001257239)	promoter-TSS (NM_001257239)	6	NM_001257239	79868	Hs.443061	NM_018466	HPRD:06542	ALG13	CDG1S|CXorf45|GLT28D1|MDS031|TDRD13|YGL047W	ALG13, UDP-N-acetylglucosaminyltransferase subunit	protein-coding
19-PTNLD28-TUMOR_peak_34493	chr15	74726213	74726336	+	13.52069	NA	promoter-TSS (NM_003612)	promoter-TSS (NM_003612)	25	NM_003612	8482	Hs.24640	NM_003612	HPRD:07081	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL	semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)	protein-coding
19-PTNLD28-TUMOR_peak_51038	chr2	10169296	10169449	+	13.52069	NA	Intergenic	Intergenic	-14310	NM_003597	8462	Hs.12229	NM_003597	HPRD:04488	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
19-PTNLD28-TUMOR_peak_63196	chr21	33896634	33896994	+	13.52050	NA	Intergenic	Intergenic	61031	NM_144659	140290	Hs.728804	NM_018277		TCP10L	C21orf77|TCP10A-2	t-complex 10-like	protein-coding
19-PTNLD28-TUMOR_peak_65976	chr22	46475904	46476645	+	13.51934	NA	Intergenic	Intergenic	-5603	NR_027033	400931	Hs.235838	NM_207477	HPRD:16929	MIRLET7BHG	linc-Ppara	MIRLET7B host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_88651	chr6	88043681	88043892	+	13.51648	NA	intron (NM_001042493, intron 2 of 3)	MSTB|LTR|ERVL-MaLR	-4790	NM_198568	375519	Hs.146727	NM_198568	HPRD:13579	GJB7	CX25|bA136M9.1|connexin25	gap junction protein, beta 7, 25kDa	protein-coding
19-PTNLD28-TUMOR_peak_44974	chr18	22343831	22344113	+	13.51648	NA	Intergenic	Intergenic	135826	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LOC729950	-	uncharacterized LOC729950	ncRNA
19-PTNLD28-TUMOR_peak_91461	chr7	19812523	19812974	+	13.51648	NA	promoter-TSS (NM_152774)	promoter-TSS (NM_152774)	-344	NM_152774	256130	Hs.487670	NM_152774	HPRD:14617	TMEM196	-	transmembrane protein 196	protein-coding
19-PTNLD28-TUMOR_peak_89305	chr6	121906247	121906454	+	13.51648	NA	Intergenic	Intergenic	149627	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_83454	chr5	156534653	156534775	+	13.51648	NA	intron (NM_032782, intron 1 of 6)	PRIMA4_LTR|LTR|ERV1	1534	NM_032782	84868	Hs.710500	NM_032782	HPRD:16227	HAVCR2	HAVcr-2|KIM-3|TIM3|TIMD-3|TIMD3|Tim-3	hepatitis A virus cellular receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_37898	chr16	54536912	54537226	+	13.51648	NA	Intergenic	Intergenic	-216691	NM_024336	79191	Hs.499205	NM_024336	HPRD:17162	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_80955	chr5	80582019	80582329	+	13.51648	NA	intron (NR_034122, intron 1 of 3)	AluJr|SINE|Alu	15214	NR_034122	100131067	Hs.655855	NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4381	chr1	75942456	75942592	+	13.51648	NA	intron (NM_001130058, intron 2 of 23)	L1PA3|LINE|L1	134275	NM_001130058	204962	Hs.654821	NM_152697	HPRD:14580	SLC44A5	CTL5	solute carrier family 44, member 5	protein-coding
19-PTNLD28-TUMOR_peak_98733	chr8	52874841	52875050	+	13.51648	NA	Intergenic	L2a|LINE|L2	-63199	NM_001286783	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72036	chr3	159029993	159030365	+	13.51648	NA	intron (NM_001197108, intron 1 of 6)	MLT1J2|LTR|ERVL-MaLR	29744	NR_037483	100500803		NR_037483		MIR3919	-	microRNA 3919	ncRNA
19-PTNLD28-TUMOR_peak_108866	chrX	84402317	84402439	+	13.51648	NA	Intergenic	L1PA3|LINE|L1	-38404	NM_001012980	340562	Hs.640783	NM_001012980	HPRD:18497	SATL1	-	spermidine/spermine N1-acetyl transferase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91997	chr7	35238506	35238629	+	13.51648	NA	Intergenic	Intergenic	-12793	NR_002833	554236	Hs.594815	NR_002833		DPY19L2P1	-	DPY19L2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_30342	chr14	53740597	53740761	+	13.51648	NA	Intergenic	LTR18B|LTR|ERVL	120607	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
19-PTNLD28-TUMOR_peak_43181	chr17	69406122	69406246	+	13.51648	NA	Intergenic	Intergenic	-207864	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_91776	chr7	28878881	28878984	+	13.51648	NA	Intergenic	SVA_D|Other|Other	119097	NM_014817	9865	Hs.744120	NM_014817		TRIL	-	TLR4 interactor with leucine-rich repeats	protein-coding
19-PTNLD28-TUMOR_peak_99280	chr8	79717152	79717453	+	13.51648	NA	5' UTR (NM_001199888, exon 1 of 4)	5' UTR (NM_001199888, exon 1 of 4)	456	NM_000880	3574	Hs.591873	NM_000880	HPRD:00892	IL7	IL-7	interleukin 7	protein-coding
19-PTNLD28-TUMOR_peak_22902	chr12	8107285	8107429	+	13.51509	NA	Intergenic	L2a|LINE|L2	-18465	NM_006931	6515	Hs.419240	NM_006931	HPRD:00686	SLC2A3	GLUT3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_86675	chr6	31838958	31839139	+	13.51509	NA	intron (NM_001178045, intron 9 of 20).7	intron (NM_001178045, intron 9 of 20).7	6400	NM_001178045	80736	Hs.335355	NM_025257	HPRD:12087	SLC44A4	C6orf29|CTL4|NG22|TPPT	solute carrier family 44, member 4	protein-coding
19-PTNLD28-TUMOR_peak_64162	chr22	16364546	16364648	+	13.51509	NA	Intergenic	Intergenic	-76660	NM_001136213	23784	Hs.581075	NM_001004053		POTEH	A26C3|ACTBL1|CT104.7|POTE22	POTE ankyrin domain family, member H	protein-coding
19-PTNLD28-TUMOR_peak_84590	chr5	180586364	180586535	+	13.51509	NA	Intergenic	Intergenic	4506	NM_206880	285659	Hs.553681	NM_206880	HPRD:14956	OR2V2	OR2V3|OST713	olfactory receptor, family 2, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_5456	chr1	110641666	110641832	+	13.51462	NA	Intergenic	Intergenic	-13313	NM_203412	164153	Hs.374027	NM_203412	HPRD:17314	UBL4B	-	ubiquitin-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_100258	chr8	118874422	118874559	+	13.51048	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	249568	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_51225	chr2	12864022	12864171	+	13.51048	NA	intron (NR_027303, intron 2 of 2)	intron (NR_027303, intron 2 of 2)	7098	NM_021643	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_46440	chr18	77748078	77748437	+	13.51048	NA	exon (NM_006701, exon 1 of 3)	exon (NM_006701, exon 1 of 3)	275	NM_006701	10907	Hs.465498	NM_006701	HPRD:18252	TXNL4A	DIB1|DIM1|HsT161|SNRNP15|TXNL4|U5-15kD	thioredoxin-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_30400	chr14	55033590	55033805	+	13.50937	NA	promoter-TSS (NM_015589)	promoter-TSS (NM_015589)	-633	NM_001161576	23034	Hs.98259	NM_015589	HPRD:10209	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_22763	chr12	6562107	6562313	+	13.50937	NA	intron (NM_018009, intron 1 of 6)	intron (NM_018009, intron 1 of 6)	1033	NM_018009	55080	Hs.504597	NM_018009	HPRD:06153	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_110015	chrX	153958546	153958882	+	13.49404	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	20644	NM_001282283	139716	Hs.496982	NM_080612	HPRD:06571	GAB3	-	GRB2-associated binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_96104	chr7	144059256	144059397	+	13.49404	NA	intron (NM_005435, intron 1 of 14)	intron (NM_005435, intron 1 of 14)	6837	NM_005435	7984	Hs.334	NM_005435	HPRD:02932	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding
19-PTNLD28-TUMOR_peak_45827	chr18	52443053	52443199	+	13.49404	NA	Intergenic	Intergenic	-52582	NM_004163	5874	Hs.25318	NM_004163	HPRD:04846	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_58916	chr2	234323949	234324139	+	13.49097	NA	intron (NM_152879, intron 3 of 29)	intron (NM_152879, intron 3 of 29)	27244	NM_003648	8527	Hs.471675	NM_003648	HPRD:03492	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
19-PTNLD28-TUMOR_peak_55756	chr2	132137296	132137400	+	13.49097	NA	Intergenic	Intergenic	-15617	NM_001077637	150786	Hs.645670	NM_001077637		WTH3DI	-	RAB6C-like	protein-coding
19-PTNLD28-TUMOR_peak_9518	chr1	204347532	204347676	+	13.49097	NA	Intergenic	Intergenic	-8757	NR_027022	127841	Hs.213144	NR_027022		LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
19-PTNLD28-TUMOR_peak_6907	chr1	152878852	152879007	+	13.49097	NA	Intergenic	Intergenic	-2110	NM_005547	3713	Hs.516439	NM_005547	HPRD:00931	IVL	-	involucrin	protein-coding
19-PTNLD28-TUMOR_peak_45277	chr18	34974062	34974557	+	13.49097	NA	intron (NM_001025087, intron 2 of 12)	CpG	171691	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_41461	chr17	39807866	39808038	+	13.49010	NA	Intergenic	Intergenic	-11501	NR_033415	284116	Hs.725790	NR_033415	ENSG00000214514	KRT42P	-	keratin 42 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_42916	chr17	62844062	62844321	+	13.48604	NA	Intergenic	Intergenic	-10889	NR_024386	440456	Hs.646585	NR_024386		PLEKHM1P	-	pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10599	chr1	228231277	228231476	+	13.48604	NA	intron (NM_033131, intron 2 of 3)	intron (NM_033131, intron 2 of 3)	36653	NM_033131	89780	Hs.336930	NM_033131	HPRD:05897	WNT3A	-	wingless-type MMTV integration site family, member 3A	protein-coding
19-PTNLD28-TUMOR_peak_3641	chr1	54851203	54851407	+	13.48604	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	20763	NM_001009955	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_20853	chr11	102212628	102212774	+	13.48604	NA	Intergenic	LTR55|LTR|ERV	-5212	NM_001256166	329	Hs.696238	NM_001166	HPRD:03419	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_37000	chr16	27992288	27992462	+	13.48604	NA	intron (NM_001109763, intron 1 of 6)	MIR|SINE|MIR	82455	NM_001109763	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_109112	chrX	107020516	107020736	+	13.48604	NA	Intergenic	Intergenic	-1609	NM_198057	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_95087	chr7	127739371	127739501	+	13.48111	NA	Intergenic	Intergenic	17523	NR_030324	693178		NR_030324		MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
19-PTNLD28-TUMOR_peak_96585	chr7	154673120	154673708	+	13.48093	NA	intron (NM_001290252, intron 19 of 23)	intron (NM_001290252, intron 19 of 23)	-46813	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1OS	PAXIP1-AS2	PAXIP1 opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_22785	chr12	6715164	6715435	+	13.48093	NA	intron (NM_001273, intron 2 of 39)	intron (NM_001273, intron 2 of 39)	318	NM_001297553	1108	Hs.162233	NM_001273	HPRD:04472	CHD4	CHD-4|Mi-2b|Mi2-BETA	chromodomain helicase DNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_107294	chrUn_gl000229	6797	7076	+	13.48093	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_4849	chr1	92067308	92067442	+	13.47935	NA	Intergenic	Intergenic	100710	NM_001134420	8317	Hs.533573	NM_003503	HPRD:10345	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
19-PTNLD28-TUMOR_peak_96620	chr7	155186037	155186182	+	13.47935	NA	Intergenic	Intergenic	-25481	NR_103545	338436	Hs.521326	NR_103545	ENSG00000204960	BLACE	-	B-cell acute lymphoblastic leukemia expressed	ncRNA
19-PTNLD28-TUMOR_peak_23640	chr12	31747727	31747897	+	13.47935	NA	intron (NR_046909, intron 1 of 2)	intron (NR_046909, intron 1 of 2)	-3860	NM_144973	160518	Hs.118166	NM_144973	HPRD:11321	DENND5B	-	DENN/MADD domain containing 5B	protein-coding
19-PTNLD28-TUMOR_peak_72423	chr3	173982815	173983099	+	13.47935	NA	intron (NM_014932, intron 4 of 6)	L1PA2|LINE|L1	-344371	NR_046664	100874010	Hs.624265	NR_046664		NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74029	chr4	3885302	3885431	+	13.47592	NA	Intergenic	LTR5A|LTR|ERVK	71782	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_11221	chr1	238649269	238649393	+	13.47414	NA	promoter-TSS (NR_015407)	promoter-TSS (NR_015407)	-14	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_95931	chr7	142014503	142014674	+	13.47414	NA	Intergenic	Intergenic	-42520	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29600	chr14	24802956	24803095	+	13.47414	NA	intron (NM_001198568, intron 1 of 24)	CpG	1252	NM_139247	196883	Hs.443428	NM_139247	HPRD:11614	ADCY4	AC4	adenylate cyclase 4	protein-coding
19-PTNLD28-TUMOR_peak_53323	chr2	70025398	70025761	+	13.47414	NA	intron (NM_001153, intron 3 of 12)	LTR25-int|LTR|ERV1	-31239	NM_178439	64395	Hs.293971	NM_178439		GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less, spermatogenesis associated 1	protein-coding
19-PTNLD28-TUMOR_peak_34092	chr15	67055735	67056002	+	13.47292	NA	intron (NR_027654, intron 4 of 4)	intron (NR_027654, intron 4 of 4)	54938	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_10833	chr1	231493697	231493965	+	13.46897	NA	Intergenic	Intergenic	20149	NM_001261462	83932	Hs.554892	NM_032018	HPRD:13164	SPRTN	C1orf124|DDDL1880|DVC1|PRO4323|Spartan|dJ876B10.3	SprT-like N-terminal domain	protein-coding
19-PTNLD28-TUMOR_peak_100356	chr8	120449760	120449898	+	13.46897	NA	Intergenic	Intergenic	21277	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_83712	chr5	167474403	167474807	+	13.46897	NA	intron (NM_001122679, intron 6 of 28)	intron (NM_001122679, intron 6 of 28)	184772	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_108316	chrX	49932131	49932394	+	13.46897	NA	Intergenic	Intergenic	32742	NM_139289	8852	Hs.97633	NM_003886	HPRD:02173	AKAP4	AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82	A kinase (PRKA) anchor protein 4	protein-coding
19-PTNLD28-TUMOR_peak_30050	chr14	43442115	43442327	+	13.46897	NA	Intergenic	L1PA3|LINE|L1	1365457	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_1679	chr1	26704527	26704786	+	13.46897	NA	Intergenic	Intergenic	-5390	NM_173574	257101	Hs.353208	NM_173574	HPRD:14563	ZNF683	-	zinc finger protein 683	protein-coding
19-PTNLD28-TUMOR_peak_22460	chr12	2038686	2038824	+	13.46897	NA	non-coding (NR_036546, exon 2 of 2)	non-coding (NR_036546, exon 2 of 2)	6987	NR_036546	100271702	Hs.737031	NR_036546	ENSG00000235049	LINC00940	-	long intergenic non-protein coding RNA 940	ncRNA
19-PTNLD28-TUMOR_peak_58126	chr2	209676773	209676922	+	13.46897	NA	Intergenic	L1PA2|LINE|L1	405292	NM_005048	5746	Hs.570296	NM_005048	HPRD:03276	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_65819	chr22	43689849	43690116	+	13.46897	NA	intron (NM_173050, intron 3 of 21)	intron (NM_173050, intron 3 of 21)	49412	NM_173050	80274	Hs.133995	NM_173050		SCUBE1	-	signal peptide, CUB domain, EGF-like 1	protein-coding
19-PTNLD28-TUMOR_peak_85787	chr6	19492937	19493251	+	13.46897	NA	Intergenic	MER95|LTR|ERV	-312383	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_54817	chr2	110436447	110436578	+	13.46897	NA	Intergenic	Intergenic	64601	NM_023016	65124	Hs.355455	NM_023016	HPRD:08643	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
19-PTNLD28-TUMOR_peak_48544	chr19	33616919	33617086	+	13.46897	NA	intron (NM_018025, intron 18 of 19)	intron (NM_018025, intron 18 of 19)	-5996	NM_173479	126248	Hs.211046	NM_173479	HPRD:14033	WDR88	PQWD	WD repeat domain 88	protein-coding
19-PTNLD28-TUMOR_peak_97587	chr8	22411264	22411553	+	13.46794	NA	intron (NM_005775, intron 1 of 20)	intron (NM_005775, intron 1 of 20)	2157	NM_005775	10174	Hs.528572	NM_005775	HPRD:11535	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_690	chr1	10555241	10555621	+	13.46794	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	20428	NM_004565	5195	Hs.149983	NM_004565	HPRD:03477	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
19-PTNLD28-TUMOR_peak_5725	chr1	115845393	115845560	+	13.46400	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	35381	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_80294	chr5	65430142	65430740	+	13.46400	NA	Intergenic	LTR41|LTR|ERVL	-9605	NM_001270493	140890	Hs.49367	NM_139168	HPRD:18043	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamine/lysine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43831	chr17	77702485	77702614	+	13.46400	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2316	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_59128	chr2	239004962	239005129	+	13.46400	NA	intron (NM_016510, intron 10 of 11)	intron (NM_016510, intron 10 of 11)	-3906	NM_194312	339768	Hs.127724	NM_194312	HPRD:14170	ESPNL	-	espin-like	protein-coding
19-PTNLD28-TUMOR_peak_16600	chr11	1715248	1715478	+	13.46400	NA	Intergenic	CpG	-3062	NM_001012416	440023	Hs.534863	NM_001012416	HPRD:17250	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
19-PTNLD28-TUMOR_peak_50709	chr2	68694	68994	+	13.46400	NA	Intergenic	Intergenic	-22256	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_38488	chr16	69438299	69438670	+	13.46400	NA	Intergenic	Intergenic	-18593	NM_005652	7014	Hs.63335	NM_005652	HPRD:03610	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_48955	chr19	39360536	39360755	+	13.46400	NA	exon (NM_001195833, exon 9 of 12)	exon (NM_001195833, exon 9 of 12)	8274	NM_198445	126432	Hs.446933	NM_198445	HPRD:13517	RINL	-	Ras and Rab interactor-like	protein-coding
19-PTNLD28-TUMOR_peak_96032	chr7	142997047	142997205	+	13.46400	NA	exon (NM_032982, exon 7 of 11)	exon (NM_032982, exon 7 of 11)	10445	NM_001224	835	Hs.368982	NM_001224	HPRD:02800	CASP2	CASP-2|ICH1|NEDD-2|NEDD2|PPP1R57	caspase 2, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_69930	chr3	114619394	114619592	+	13.46400	NA	promoter-TSS (NR_121662)	promoter-TSS (NR_121662)	-24	NR_121662	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_38855	chr16	78718283	78718441	+	13.46400	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	585052	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_21965	chr11	126414538	126414727	+	13.46400	NA	intron (NM_001301097, intron 2 of 15)	intron (NM_001301097, intron 2 of 15)	-108041	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
19-PTNLD28-TUMOR_peak_108284	chrX	49019923	49020397	+	13.46400	NA	exon (NM_024859, exon 2 of 6)	exon (NM_024859, exon 2 of 6)	979	NM_001099681	79917	Hs.193170	NM_024859		MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_80589	chr5	71852469	71852952	+	13.46400	NA	promoter-TSS (NR_105008)	promoter-TSS (NR_105008)	-194	NR_105008	102503427	Hs.429280	NR_105008		LOC102503427	-	uncharacterized LOC102503427	ncRNA
19-PTNLD28-TUMOR_peak_94040	chr7	95315513	95315713	+	13.46400	NA	Intergenic	Intergenic	-86205	NM_001278421	1780	Hs.440364	NM_004411	HPRD:04798	DYNC1I1	DNCI1|DNCIC1	dynein, cytoplasmic 1, intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_19822	chr11	71623041	71623278	+	13.46400	NA	intron (NR_029192, intron 6 of 6)	HERVE-int|LTR|ERV1	16334	NR_029192	100133315	Hs.150324	NR_029192		LOC100133315	-	transient receptor potential cation channel, subfamily C, member 2-like	pseudo
19-PTNLD28-TUMOR_peak_74188	chr4	6691748	6692007	+	13.46300	NA	Intergenic	Intergenic	-3689	NM_005980	6286	Hs.2962	NM_005980		S100P	MIG9	S100 calcium binding protein P	protein-coding
19-PTNLD28-TUMOR_peak_45484	chr18	43738528	43738761	+	13.46191	NA	Intergenic	Intergenic	-15344	NM_001008239	147339	Hs.116486	NM_145055	HPRD:12690	C18orf25	ARKL1|RNF111L1	chromosome 18 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_54555	chr2	102004857	102005067	+	13.44875	NA	promoter-TSS (NM_153836)	promoter-TSS (NM_153836)	-997	NM_153836	200407	Hs.732289	NM_153836		CREG2	-	cellular repressor of E1A-stimulated genes 2	protein-coding
19-PTNLD28-TUMOR_peak_60193	chr20	23128587	23128988	+	13.44875	NA	Intergenic	Intergenic	-15514	NR_034149	200261	Hs.352228	NM_182535	HPRD:14124	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
19-PTNLD28-TUMOR_peak_69880	chr3	113251254	113251433	+	13.44875	NA	5' UTR (NM_017699, exon 1 of 25)	5' UTR (NM_017699, exon 1 of 25)	125	NM_017699	54847	Hs.591291	NM_017699	HPRD:12111	SIDT1	B830021E24Rik|SID-1|SID1	SID1 transmembrane family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_52024	chr2	32287645	32287853	+	13.44510	NA	promoter-TSS (NM_014946)	promoter-TSS (NM_014946)	-931	NM_199436	6683	Hs.468091	NM_014946	HPRD:05044	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
19-PTNLD28-TUMOR_peak_1754	chr1	27616273	27616381	+	13.44403	NA	intron (NM_001276252, intron 6 of 15)	SVA_D|Other|Other	-32309	NM_032125	84065	Hs.469171	NM_032125	HPRD:13167	TMEM222	C1orf160	transmembrane protein 222	protein-coding
19-PTNLD28-TUMOR_peak_61096	chr20	39574719	39574829	+	13.44403	NA	Intergenic	AmnSINE1|SINE|Deu	-82688	NM_003286	7150	Hs.472737	NM_003286	HPRD:00535	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
19-PTNLD28-TUMOR_peak_76460	chr4	104177146	104177325	+	13.44403	NA	Intergenic	L1PA2|LINE|L1	-57669	NM_001286734	1062	Hs.75573	NM_001813	HPRD:00316	CENPE	CENP-E|KIF10|PPP1R61	centromere protein E, 312kDa	protein-coding
19-PTNLD28-TUMOR_peak_98134	chr8	33436302	33436484	+	13.44403	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-11747	NM_024787	79845	Hs.151237	NM_024787	HPRD:11498	RNF122	-	ring finger protein 122	protein-coding
19-PTNLD28-TUMOR_peak_27180	chr12	130671399	130671715	+	13.44403	NA	Intergenic	Intergenic	24553	NM_007197	11211	Hs.31664	NM_007197	HPRD:05853	FZD10	CD350|FZ-10|Fz10|FzE7|hFz10	frizzled class receptor 10	protein-coding
19-PTNLD28-TUMOR_peak_82323	chr5	134927071	134927284	+	13.44403	NA	Intergenic	LTR16E1|LTR|ERVL	-12208	NM_004887	9547	Hs.483444	NM_004887	HPRD:16049	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	chemokine (C-X-C motif) ligand 14	protein-coding
19-PTNLD28-TUMOR_peak_4317	chr1	70832785	70832939	+	13.44403	NA	intron (NR_027404, intron 3 of 3)	LTR10F|LTR|ERV1	12369	NM_001031693	11147	Hs.142245	NM_007071	HPRD:05083	HHLA3	-	HERV-H LTR-associating 3	protein-coding
19-PTNLD28-TUMOR_peak_35045	chr15	86162225	86162607	+	13.44403	NA	promoter-TSS (NM_001270546)	promoter-TSS (NM_001270546)	-765	NM_001270546	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_69973	chr3	116164102	116164319	+	13.44403	NA	5' UTR (NM_002338, exon 1 of 7)	5' UTR (NM_002338, exon 1 of 7)	175	NM_002338	4045	Hs.26409	NM_002338	HPRD:09128	LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_45859	chr18	53982665	53982905	+	13.44403	NA	Intergenic	Intergenic	-178018	NR_040025	100505474	Hs.662191	NR_040025	ENSG00000267712	LOC100505474	-	uncharacterized LOC100505474	ncRNA
19-PTNLD28-TUMOR_peak_38910	chr16	80118625	80118826	+	13.44403	NA	Intergenic	Intergenic	289579	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_72375	chr3	172268428	172268589	+	13.44403	NA	Intergenic	LTR16A1|LTR|ERVL	-27211	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_56814	chr2	168605511	168605859	+	13.44403	NA	Intergenic	Intergenic	-69497	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_35451	chr15	99955201	99955345	+	13.44403	NA	Intergenic	Intergenic	-150860	NM_005587	4205	Hs.268675	NM_005587	HPRD:02807	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
19-PTNLD28-TUMOR_peak_10951	chr1	233932223	233932406	+	13.44403	NA	Intergenic	Intergenic	-108144	NM_173508	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_20301	chr11	79111826	79112029	+	13.44403	NA	intron (NM_001098816, intron 1 of 33)	intron (NM_001098816, intron 1 of 33)	1226	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_30896	chr14	68189142	68189291	+	13.44403	NA	5' UTR (NM_152443, exon 3 of 9)	5' UTR (NM_152443, exon 3 of 9)	20613	NM_152443	145226	Hs.415322	NM_152443	HPRD:10585	RDH12	LCA13|LCA3|RP53|SDR7C2	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_69709	chr3	111258700	111258814	+	13.44403	NA	Intergenic	Intergenic	-2169	NM_005816	10225	Hs.142023	NM_005816	HPRD:06916	CD96	TACTILE	CD96 molecule	protein-coding
19-PTNLD28-TUMOR_peak_40151	chr17	9264108	9264291	+	13.44403	NA	intron (NM_004853, intron 7 of 7)	intron (NM_004853, intron 7 of 7)	-181764	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_85515	chr6	13747841	13748063	+	13.44403	NA	Intergenic	AluY|SINE|Alu	-36156	NM_005493	10048	Hs.708182	NM_005493	HPRD:04835	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_56786	chr2	166593993	166594136	+	13.44403	NA	Intergenic	L1PA2|LINE|L1	56739	NM_004482	2591	Hs.170986	NM_004482	HPRD:03453	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_58604	chr2	224162593	224162823	+	13.44403	NA	Intergenic	HERVL-int|LTR|ERVL	246060	NM_080671	23704	Hs.348522	NM_080671	HPRD:09689	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_79259	chr5	25344734	25344918	+	13.44403	NA	Intergenic	AluY|SINE|Alu	-504134	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	ncRNA
19-PTNLD28-TUMOR_peak_66576	chr3	11025077	11025236	+	13.44403	NA	Intergenic	MER113|DNA|hAT-Charlie	-9264	NM_003042	6529	Hs.443874	NM_003042	HPRD:00664	SLC6A1	GABATHG|GABATR|GAT1	solute carrier family 6 (neurotransmitter transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_6733	chr1	151027809	151028016	+	13.44169	NA	intron (NM_020239, intron 2 of 4)	intron (NM_020239, intron 2 of 4)	4213	NM_020239	56882	Hs.22065	NM_020239	HPRD:16694	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
19-PTNLD28-TUMOR_peak_44064	chr17	80174657	80174830	+	13.44169	NA	Intergenic	Intergenic	-4054	NM_198082	284001	Hs.631724	NM_152675	HPRD:08041	CCDC57	-	coiled-coil domain containing 57	protein-coding
19-PTNLD28-TUMOR_peak_41965	chr17	45609293	45609706	+	13.44169	NA	intron (NM_006310, intron 1 of 22)	intron (NM_006310, intron 1 of 22)	1055	NM_006310	9520	Hs.443837	NM_006310	HPRD:07366	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
19-PTNLD28-TUMOR_peak_97842	chr8	27494064	27494268	+	13.43967	NA	intron (NM_016240, intron 1 of 5)	intron (NM_016240, intron 1 of 5)	2589	NM_016240	51435	Hs.128856	NM_016240	HPRD:04104	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_63901	chr21	45288465	45288608	+	13.43817	NA	intron (NM_020132, intron 1 of 9)	intron (NM_020132, intron 1 of 9)	3420	NM_020132	56894	Hs.248785	NM_020132	HPRD:10637	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_11031	chr1	234882169	234882442	+	13.43817	NA	Intergenic	Intergenic	22516	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_105881	chr9	124260534	124260970	+	13.43817	NA	intron (NR_003191, intron 1 of 6)	intron (NR_003191, intron 1 of 6)	1554	NR_045211	2681	Hs.97469	NR_003191	ENSG00000204136	GGTA1P	GGTA|GGTA1|GLYT2|a1/3GTP	glycoprotein, alpha-galactosyltransferase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_100259	chr8	118875133	118875280	+	13.43817	NA	intron (NM_000127, intron 1 of 10)	L2a|LINE|L2	248852	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_90727	chr7	307114	307271	+	13.43816	NA	Intergenic	CpG	-22944	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
19-PTNLD28-TUMOR_peak_84486	chr5	179190278	179190432	+	13.43720	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	30504	NM_014757	9794	Hs.631951	NM_014757	HPRD:05665	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_50446	chr19	56645305	56645529	+	13.43720	NA	Intergenic	Intergenic	-7118	NM_001253792	55311	Hs.24545	NM_018337	HPRD:08488	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
19-PTNLD28-TUMOR_peak_108761	chrX	73640145	73640673	+	13.43720	NA	promoter-TSS (NM_006517)	promoter-TSS (NM_006517)	-919	NM_006517	6567	Hs.75317	NM_006517	HPRD:02106	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16, member 2 (thyroid hormone transporter)	protein-coding
19-PTNLD28-TUMOR_peak_53100	chr2	65058926	65059101	+	13.43720	NA	Intergenic	LFSINE_Vert|SINE|SINE	31752	NR_110224	101927438	Hs.580313	NR_110224		LOC101927438	-	uncharacterized LOC101927438	ncRNA
19-PTNLD28-TUMOR_peak_36119	chr16	8617849	8618027	+	13.43720	NA	Intergenic	Intergenic	2069	NM_001290095	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_109289	chrX	118603039	118603306	+	13.43720	NA	promoter-TSS (NR_028443)	promoter-TSS (NR_028443)	-89	NR_028443	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97015	chr8	8064291	8064435	+	13.43545	NA	Intergenic	Intergenic	-21729	NR_024361	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_55053	chr2	113655312	113655478	+	13.43545	NA	Intergenic	Intergenic	-15153	NM_173203	27178	Hs.166371	NM_014439	HPRD:05695	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
19-PTNLD28-TUMOR_peak_80401	chr5	67745280	67745604	+	13.43545	NA	Intergenic	Intergenic	157046	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_104085	chr9	83743618	83743869	+	13.43545	NA	Intergenic	Intergenic	559853	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_66240	chr3	4560777	4560945	+	13.43545	NA	intron (NM_001168272, intron 3 of 60)	intron (NM_001168272, intron 3 of 60)	25829	NM_002222	3708	Hs.567295	NM_002222	HPRD:00925	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_19653	chr11	69166307	69166462	+	13.43545	NA	Intergenic	L1ME1|LINE|L1	104779	NM_001300924	26579	Hs.523848	NM_138768	HPRD:16130	MYEOV	OCIM	myeloma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_22887	chr12	7991817	7992174	+	13.43545	NA	intron (NM_001286237, intron 1 of 9)	L2a|LINE|L2	33640	NM_153449	144195	Hs.655169	NM_153449	HPRD:11573	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
19-PTNLD28-TUMOR_peak_53478	chr2	73291054	73291240	+	13.43545	NA	intron (NM_144579, intron 1 of 13)	intron (NM_144579, intron 1 of 13)	7818	NM_144579	94097	Hs.368171	NM_144579	HPRD:18047	SFXN5	BBG-TCC	sideroflexin 5	protein-coding
19-PTNLD28-TUMOR_peak_21732	chr11	122476253	122476422	+	13.43545	NA	Intergenic	Intergenic	-50061	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_35430	chr15	99409803	99409910	+	13.43545	NA	intron (NM_001291858, intron 2 of 20)	intron (NM_001291858, intron 2 of 20)	82201	NR_039864	100616432		NR_039864		MIR4714	-	microRNA 4714	ncRNA
19-PTNLD28-TUMOR_peak_58991	chr2	235992585	235992769	+	13.43348	NA	Intergenic	Intergenic	132049	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_61146	chr20	40834832	40835149	+	13.43348	NA	intron (NM_133170, intron 16 of 31)	L1PA2|LINE|L1	-479133	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_26942	chr12	124475175	124475378	+	13.43348	NA	intron (NM_152437, intron 3 of 4)	intron (NM_152437, intron 3 of 4)	17514	NM_001204299	100533183	Hs.432901	NM_001204299	ENSG00000255906	ZNF664-FAM101A	-	protein FAM101A	protein-coding
19-PTNLD28-TUMOR_peak_106659	chr9	137553743	137553898	+	13.43348	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	20169	NM_000093	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_85104	chr6	6788796	6789167	+	13.43183	NA	Intergenic	LTR33|LTR|ERVL	-165922	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88332	chr6	74233463	74233593	+	13.42851	NA	Intergenic	CpG	-2773	NM_001402	1915	Hs.535192	NM_001402	HPRD:00559	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_53149	chr2	65663393	65663758	+	13.41539	NA	Intergenic	CpG	-3919	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_13464	chr10	48707251	48707386	+	13.41443	NA	Intergenic	Intergenic	99667	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_56819	chr2	168689919	168690146	+	13.41432	NA	intron (NM_020981, intron 1 of 1)	intron (NM_020981, intron 1 of 1)	14850	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_65422	chr22	37942958	37943448	+	13.41359	NA	Intergenic	Intergenic	-13268	NM_152243	11135	Hs.225356	NM_152243	HPRD:07303	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding
19-PTNLD28-TUMOR_peak_73962	chr4	3293374	3293655	+	13.41359	NA	Intergenic	LTR33|LTR|ERVL	-22360	NM_198229	6002	Hs.527061	NM_002926	HPRD:03943	RGS12	-	regulator of G-protein signaling 12	protein-coding
19-PTNLD28-TUMOR_peak_7148	chr1	155034042	155034207	+	13.41359	NA	intron (NM_207194, intron 20 of 21)	intron (NM_207194, intron 20 of 21)	-2089	NM_182690	1945	Hs.449913	NM_005227	HPRD:03224	EFNA4	EFL4|EPLG4|LERK4	ephrin-A4	protein-coding
19-PTNLD28-TUMOR_peak_49112	chr19	41224860	41224982	+	13.41261	NA	intron (NM_025194, intron 1 of 6)	intron (NM_025194, intron 1 of 6)	1913	NM_025194	80271	Hs.515415	NM_025194	HPRD:09400	ITPKC	IP3-3KC|IP3KC	inositol-trisphosphate 3-kinase C	protein-coding
19-PTNLD28-TUMOR_peak_66080	chr22	50346030	50346218	+	13.41146	NA	Intergenic	Intergenic	-8019	NM_001001852	415116	Hs.530381	NM_001001852	HPRD:15137	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_45679	chr18	47146294	47146494	+	13.40743	NA	Intergenic	Intergenic	57967	NM_006033	9388	Hs.465102	NM_006033	HPRD:04730	LIPG	EDL|EL|PRO719	lipase, endothelial	protein-coding
19-PTNLD28-TUMOR_peak_78881	chr5	10333727	10334076	+	13.40743	NA	Intergenic	CpG	-19850	NM_001270661	10299	Hs.432862	NM_005885	HPRD:11095	MARCH6	DOA10|MARCH-VI|RNF176|TEB4	membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_48944	chr19	39290308	39290589	+	13.40743	NA	Intergenic	Intergenic	10598	NM_001042507	653499	Hs.558355	NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	lectin, galactoside-binding, soluble, 7B	protein-coding
19-PTNLD28-TUMOR_peak_14636	chr10	82373154	82373338	+	13.40743	NA	intron (NM_001145719, intron 6 of 6)	intron (NM_001145719, intron 6 of 6)	72671	NM_001145719	387694	Hs.147643	NM_207372	HPRD:18050	SH2D4B	-	SH2 domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_86613	chr6	31453928	31454198	+	13.40743	NA	Intergenic	Intergenic	-8595	NM_001289160	4277	Hs.731446	NM_005931	HPRD:03894	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
19-PTNLD28-TUMOR_peak_9385	chr1	203031574	203031824	+	13.40743	NA	intron (NM_015053, intron 11 of 16)	intron (NM_015053, intron 11 of 16)	11388	NM_015053	8497	Hs.153648	NM_015053	HPRD:16012	PPFIA4	-	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_106263	chr9	131070055	131070237	+	13.40743	NA	Intergenic	AluJb|SINE|Alu	14551	NM_015679	26995	Hs.632685	NM_015679	HPRD:18230	TRUB2	CLONE24922	TruB pseudouridine (psi) synthase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_26222	chr12	110161324	110161597	+	13.40743	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	9273	NM_032829	84915	Hs.661785	NM_032829	HPRD:07868	FAM222A	C12orf34	family with sequence similarity 222, member A	protein-coding
19-PTNLD28-TUMOR_peak_87133	chr6	36788623	36788770	+	13.40743	NA	intron (NM_020939, intron 3 of 20)	AluJo|SINE|Alu	18524	NM_020939	57699	Hs.657869	NM_020939	HPRD:05018	CPNE5	COPN5|CPN5	copine V	protein-coding
19-PTNLD28-TUMOR_peak_7626	chr1	160800408	160800599	+	13.40743	NA	3' UTR (NM_016382, exon 9 of 9)	3' UTR (NM_016382, exon 9 of 9)	32189	NM_001166664	51744	Hs.157872	NM_016382	HPRD:16121	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule, natural killer cell receptor 2B4	protein-coding
19-PTNLD28-TUMOR_peak_88397	chr6	76152256	76152413	+	13.40680	NA	intron (NM_001300866, intron 1 of 6)	SVA_D|Other|Other	51211	NR_110608	27145	Hs.696158	NM_015687	HPRD:09533	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10307	chr1	223858290	223858694	+	13.40680	NA	Intergenic	Intergenic	-5056	NM_001143962	388743	Hs.291487	NM_001143962		CAPN8	nCL-2	calpain 8	protein-coding
19-PTNLD28-TUMOR_peak_65695	chr22	41956716	41957024	+	13.40680	NA	promoter-TSS (NM_014460)	promoter-TSS (NM_014460)	-144	NM_014460	27254	Hs.310893	NM_014460	HPRD:15140	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2, RNA binding	protein-coding
19-PTNLD28-TUMOR_peak_16923	chr11	7698457	7698660	+	13.40680	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-3737	NM_016229	51700	Hs.414362	NM_016229	HPRD:06435	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_30984	chr14	69274087	69274274	+	13.40680	NA	Intergenic	Intergenic	-11220	NM_001244701	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_9364	chr1	202679528	202679661	+	13.40680	NA	promoter-TSS (NM_177402)	promoter-TSS (NM_177402)	-43	NM_177402	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_61950	chr20	50527222	50527364	+	13.40571	NA	Intergenic	Intergenic	-47841	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
19-PTNLD28-TUMOR_peak_34988	chr15	85345088	85345432	+	13.40571	NA	exon (NM_014630, exon 11 of 11)	exon (NM_014630, exon 11 of 11)	-14651	NM_020778	57538	Hs.459183	NM_020778	HPRD:11365	ALPK3	MAK|MIDORI	alpha-kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_72291	chr3	170578059	170578189	+	13.40571	NA	Intergenic	LTR13|LTR|ERVK	9921	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_94995	chr7	122474744	122474915	+	13.40571	NA	intron (NM_001009571, intron 1 of 27)	L1PA5|LINE|L1	51984	NM_001167940	93664	Hs.649459	NM_017954	HPRD:12996	CADPS2	-	Ca++-dependent secretion activator 2	protein-coding
19-PTNLD28-TUMOR_peak_27711	chr13	31377176	31377437	+	13.40571	NA	promoter-TSS (NR_047012)	promoter-TSS (NR_047012)	-37	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
19-PTNLD28-TUMOR_peak_18059	chr11	35413894	35414132	+	13.40571	NA	intron (NM_001252652, intron 1 of 11)	intron (NM_001252652, intron 1 of 11)	27092	NM_004171	6506	Hs.502338	NM_004171	HPRD:02625	SLC1A2	EAAT2|GLT-1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_5756	chr1	116207940	116208131	+	13.40571	NA	intron (NM_138959, intron 4 of 7)	intron (NM_138959, intron 4 of 7)	22785	NM_001172412	81839	Hs.515130	NM_138959	HPRD:18279	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109290	chrX	118616520	118616835	+	13.40571	NA	Intergenic	CpG	-13594	NR_028443	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3406	chr1	49381914	49382113	+	13.40571	NA	intron (NM_032785, intron 5 of 13)	intron (NM_032785, intron 5 of 13)	-139466	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_21968	chr11	126477282	126477468	+	13.40571	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	-45298	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
19-PTNLD28-TUMOR_peak_92197	chr7	43152923	43153101	+	13.40571	NA	intron (NM_001287059, intron 1 of 27)	CpG	814	NM_015052	23072	Hs.164453	NM_015052		HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_96134	chr7	146603265	146603472	+	13.40571	NA	intron (NM_014141, intron 3 of 23)	L1PA2|LINE|L1	-40540	NR_049838	100847078		NR_049838		MIR548AQ	-	microRNA 548aq	ncRNA
19-PTNLD28-TUMOR_peak_13755	chr10	61193565	61193734	+	13.40571	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-70988	NM_001143773	220965	Hs.607594	NM_198215	HPRD:16875	FAM13C	FAM13C1	family with sequence similarity 13, member C	protein-coding
19-PTNLD28-TUMOR_peak_90253	chr6	158375246	158375697	+	13.40571	NA	Intergenic	Intergenic	-27417	NM_003898	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_29907	chr14	35825408	35825621	+	13.40571	NA	Intergenic	Intergenic	48446	NM_020529	4792	Hs.81328	NM_020529	HPRD:01235	NFKBIA	IKBA|MAD-3|NFKBI	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_87962	chr6	52589352	52589469	+	13.40571	NA	Intergenic	Intergenic	20547	NR_033760	730152	Hs.739662	NR_033760		GSTA7P	GSTAP2|GSTAP6	glutathione S-transferase alpha 7, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_34619	chr15	76483171	76483339	+	13.40571	NA	intron (NM_152335, intron 8 of 10)	intron (NM_152335, intron 8 of 10)	-9428	NR_120360	101929439	Hs.631721	NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
19-PTNLD28-TUMOR_peak_98145	chr8	36251850	36252016	+	13.40571	NA	Intergenic	L1PA2|LINE|L1	-389909	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_15058	chr10	98346628	98347125	+	13.40248	NA	promoter-TSS (NM_020123)	promoter-TSS (NM_020123)	-67	NM_020123	56889	Hs.500674	NM_020123	HPRD:18073	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
19-PTNLD28-TUMOR_peak_211	chr1	2165907	2166143	+	13.40248	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	5891	NM_003036	6497	Hs.656507	NM_003036	HPRD:01271	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_6888	chr1	152479715	152479918	+	13.40248	NA	Intergenic	MamRep605|Unknown|Unknown	-3504	NM_178438	254910	Hs.516410	NM_178438	HPRD:17265	LCE5A	LEP18|SPRL5A	late cornified envelope 5A	protein-coding
19-PTNLD28-TUMOR_peak_83077	chr5	148382700	148382879	+	13.40248	NA	3' UTR (NM_024577, exon 17 of 17)	3' UTR (NM_024577, exon 17 of 17)	59948	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_103374	chr9	46843567	46843800	+	13.40053	NA	Intergenic	MER90a|LTR|ERV1	79892	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_107612	chrX	14045712	14045970	+	13.40053	NA	intron (NM_017856, intron 1 of 4)	intron (NM_017856, intron 1 of 4)	2194	NM_017856	54960	Hs.592237	NM_017856	HPRD:06533	GEMIN8	FAM51A1	gem (nuclear organelle) associated protein 8	protein-coding
19-PTNLD28-TUMOR_peak_41142	chr17	34889981	34890171	+	13.40053	NA	intron (NM_025109, intron 2 of 22)	intron (NM_025109, intron 2 of 22)	1229	NM_025109	80179	Hs.302051	NM_025109	HPRD:10107	MYO19	MYOHD1	myosin XIX	protein-coding
19-PTNLD28-TUMOR_peak_41850	chr17	43823427	43823579	+	13.39859	NA	intron (NM_001256299, intron 3 of 14)	MIR3|SINE|MIR	-38143	NM_001145146	1394	Hs.417628	NM_004382	HPRD:08830	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f	corticotropin releasing hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_29571	chr14	24684772	24685088	+	13.39124	NA	intron (NM_001199823, intron 3 of 6)	intron (NM_001199823, intron 3 of 6)	346	NM_001199821	145553	Hs.220963	NM_138476	HPRD:14695	MDP1	FN6PASE|MDP-1	magnesium-dependent phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_91234	chr7	7221449	7221619	+	13.39021	NA	promoter-TSS (NM_020156)	promoter-TSS (NM_020156)	-712	NM_020156	56913	Hs.239666	NM_020156	HPRD:16631	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_87592	chr6	43474572	43474692	+	13.39017	NA	TTS (NM_001146020)	TTS (NM_001146020)	3449	NM_001012974	221424	Hs.445552	NM_001012974	HPRD:10167	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
19-PTNLD28-TUMOR_peak_51695	chr2	26981882	26982052	+	13.39006	NA	Intergenic	Intergenic	-5175	NM_017877	54978	Hs.1594	NM_017877	HPRD:12808	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35, member F6	protein-coding
19-PTNLD28-TUMOR_peak_6250	chr1	145054332	145054494	+	13.39006	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	-14418	NM_001198832	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_95392	chr7	131583307	131583514	+	13.38957	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-11569	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_32865	chr15	31528165	31528342	+	13.38749	NA	Intergenic	Intergenic	-5203	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
19-PTNLD28-TUMOR_peak_104278	chr9	88656253	88656538	+	13.38749	NA	intron (NM_177937, intron 5 of 9)	MER21C|LTR|ERVL	58115	NM_016548	51280	Hs.494337	NM_016548	HPRD:08428	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_95731	chr7	138759868	138760078	+	13.38749	NA	intron (NM_024625, intron 6 of 8)	intron (NM_024625, intron 6 of 8)	34492	NM_020119	56829	Hs.133512	NM_020119	HPRD:09534	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type, antiviral 1	protein-coding
19-PTNLD28-TUMOR_peak_5908	chr1	118369505	118369633	+	13.38749	NA	Intergenic	LTR16A|LTR|ERVL	102733	NM_017686	54834	Hs.310809	NM_017686	HPRD:06576	GDAP2	MACROD3	ganglioside induced differentiation associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_85487	chr6	13426312	13426502	+	13.38749	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-18038	NM_001242630	54438	Hs.484686	NM_018988	HPRD:13574	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_37445	chr16	32951279	32951493	+	13.38749	NA	Intergenic	Intergenic	-54923	NR_003083	386757	Hs.433146	NM_198857	HPRD:13479	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_85077	chr6	6557237	6557408	+	13.38749	NA	intron (NR_026970, intron 3 of 7)	intron (NR_026970, intron 3 of 7)	-31612	NM_004271	9450	Hs.653138	NM_004271		LY86	MD-1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
19-PTNLD28-TUMOR_peak_102281	chr9	16069713	16070107	+	13.38492	NA	Intergenic	Intergenic	183195	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_102411	chr9	20351712	20351977	+	13.38492	NA	intron (NM_001286691, intron 10 of 10)	Eulor6A|DNA?|DNA?	59392	NR_039684	100616229		NR_039684		MIR4473	-	microRNA 4473	ncRNA
19-PTNLD28-TUMOR_peak_28163	chr13	47216075	47216226	+	13.38492	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	88854	NM_015116	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_78456	chr4	188523519	188523963	+	13.38492	NA	intron (NR_110436, intron 2 of 2)	intron (NR_110436, intron 2 of 2)	70054	NR_110436	100506272	Hs.508163	NR_110436	ENSG00000250590	LOC100506272	-	uncharacterized LOC100506272	ncRNA
19-PTNLD28-TUMOR_peak_107134	chrUn_gl000222	149161	149350	+	13.38492	NA	Intergenic	HERVE-int|LTR|ERV1	-59945	NR_037925	647476	Hs.274541	NR_037925		FLJ20518	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_100345	chr8	120235147	120235317	+	13.38492	NA	intron (NM_052886, intron 3 of 4)	intron (NM_052886, intron 3 of 4)	14622	NM_052886	114569	Hs.201083	NM_052886	HPRD:14351	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_80529	chr5	70693965	70694155	+	13.38492	NA	Intergenic	LTR17|LTR|ERV1	22448	NR_003922	5370	Hs.742169	NM_031888	HPRD:15941	PMCHL2	-	pro-melanin-concentrating hormone-like 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71376	chr3	141634005	141634126	+	13.38492	NA	intron (NM_001679, intron 4 of 6)	intron (NM_001679, intron 4 of 6)	38595	NM_001679	483	Hs.477789	NM_001679	HPRD:03521	ATP1B3	ATPB-3|CD298	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_106078	chr9	127996035	127996251	+	13.38492	NA	TTS (NM_005347)	TTS (NM_005347)	7523	NM_005347	3309	Hs.743241	NM_005347	HPRD:00682	HSPA5	BIP|GRP78|HEL-S-89n|MIF2	heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)	protein-coding
19-PTNLD28-TUMOR_peak_20188	chr11	76810529	76810741	+	13.38492	NA	intron (NM_004055, intron 3 of 12)	SVA_F|Other|Other	-3251	NM_006189	4975	Hs.673853	NM_006189	HPRD:01254	OMP	-	olfactory marker protein	protein-coding
19-PTNLD28-TUMOR_peak_51532	chr2	23516811	23516962	+	13.38492	NA	Intergenic	Intergenic	-91412	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_19047	chr11	62676695	62676917	+	13.38492	NA	3' UTR (NM_000738, exon 2 of 2)	3' UTR (NM_000738, exon 2 of 2)	12206	NM_000738	1128	Hs.632119	NM_000738	HPRD:00338	CHRM1	HM1|M1|M1R	cholinergic receptor, muscarinic 1	protein-coding
19-PTNLD28-TUMOR_peak_66020	chr22	46992853	46992988	+	13.38492	NA	Intergenic	Intergenic	-29738	NM_015124	23151	Hs.475150	NM_015124	HPRD:11107	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_85783	chr6	19413695	19413869	+	13.38129	NA	Intergenic	Intergenic	-233071	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_92425	chr7	47415301	47415439	+	13.38129	NA	intron (NM_022748, intron 16 of 30)	intron (NM_022748, intron 16 of 30)	206372	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_25021	chr12	65514873	65515127	+	13.37234	NA	5' UTR (NM_007191, exon 1 of 10)	5' UTR (NM_007191, exon 1 of 10)	346	NM_007191	11197	Hs.284122	NM_007191	HPRD:05541	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_32515	chr15	22145942	22146086	+	13.37234	NA	promoter-TSS (NR_028506)	promoter-TSS (NR_028506)	-212	NR_028506	440225	Hs.722451	NR_028506	ENSG00000258997	NF1P2	NF1HHS	neurofibromin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_83309	chr5	151586896	151587449	+	13.37234	NA	intron (NR_109876, intron 1 of 2)	L1PA2|LINE|L1	197668	NM_020167	56923	Hs.731911	NM_020167	HPRD:12003	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_99667	chr8	99610898	99611290	+	13.37234	NA	intron (NM_001256313, intron 4 of 8)	intron (NM_001256313, intron 4 of 8)	171844	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_87728	chr6	45144197	45144405	+	13.37234	NA	intron (NM_003599, intron 2 of 10)	L1PA3|LINE|L1	21206	NR_030313	693171		NR_030313		MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
19-PTNLD28-TUMOR_peak_62864	chr21	18512108	18512285	+	13.37234	NA	Intergenic	Intergenic	-299012	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_44874	chr18	20618689	20618971	+	13.37234	NA	Intergenic	LTR3B_|LTR|ERVK	-95698	NM_001256438	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_58094	chr2	208610912	208611060	+	13.37234	NA	intron (NM_001142300, intron 5 of 7)	intron (NM_001142300, intron 5 of 7)	-8545	NR_039934	100616361		NR_039934	miRBase:MI0017418	MIR4775	-	microRNA 4775	ncRNA
19-PTNLD28-TUMOR_peak_98742	chr8	53326608	53326735	+	13.37234	NA	Intergenic	Intergenic	-4232	NM_014682	9705	Hs.655499	NM_014682	HPRD:18110	ST18	NZF3|ZC2HC10|ZNF387	suppression of tumorigenicity 18, zinc finger	protein-coding
19-PTNLD28-TUMOR_peak_32093	chr14	101617601	101617967	+	13.37234	NA	Intergenic	Intergenic	81536	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_70217	chr3	123208353	123208564	+	13.37234	NA	Intergenic	Intergenic	-41066	NM_183357	111	Hs.593292	NM_183357	HPRD:08973	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
19-PTNLD28-TUMOR_peak_67205	chr3	24513847	24514206	+	13.37234	NA	intron (NM_001128176, intron 1 of 10)	intron (NM_001128176, intron 1 of 10)	-21552	NR_046244	644990	Hs.631912	NR_046244		THRB-AS1	-	THRB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107972	chrX	39711812	39712049	+	13.37234	NA	Intergenic	Intergenic	244789	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_76566	chr4	110343641	110343793	+	13.37234	NA	Intergenic	Intergenic	-11211	NM_006323	10427	Hs.292472	NM_006323	HPRD:06216	SEC24B	SEC24	SEC24 family member B	protein-coding
19-PTNLD28-TUMOR_peak_108709	chrX	71351576	71352093	+	13.37234	NA	promoter-TSS (NM_001024455)	promoter-TSS (NM_001024455)	-83	NM_001024455	340526	Hs.512180	NM_001024455	HPRD:18594	RGAG4	6430402L03Rik|MAR5|MART5	retrotransposon gag domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_43077	chr17	65672560	65672690	+	13.37234	NA	intron (NM_012417, intron 8 of 8)	intron (NM_012417, intron 8 of 8)	-41436	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_57180	chr2	178197168	178197303	+	13.37234	NA	intron (NR_026966, intron 3 of 8)	intron (NR_026966, intron 3 of 8)	-18625	NR_106767	102465255		NR_106767		MIR6512	hsa-mir-6512	microRNA 6512	ncRNA
19-PTNLD28-TUMOR_peak_47745	chr19	15706019	15706294	+	13.37234	NA	Intergenic	LTR44|LTR|ERV1	-19873	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	cytochrome P450, family 4, subfamily F, polypeptide 8	protein-coding
19-PTNLD28-TUMOR_peak_26168	chr12	109197281	109197533	+	13.37234	NA	intron (NM_001161330, intron 10 of 13)	intron (NM_001161330, intron 10 of 13)	23920	NM_001161331	54434	Hs.199763	NM_018984	HPRD:09486	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_99255	chr8	76191024	76191149	+	13.37234	NA	promoter-TSS (NR_103848)	promoter-TSS (NR_103848)	-370	NR_103848	101805492	Hs.571424	NR_103848		CASC9	LINC00981	cancer susceptibility candidate 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_68466	chr3	55225892	55226110	+	13.37234	NA	Intergenic	Intergenic	-263929	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_87843	chr6	47071864	47072010	+	13.36930	NA	Intergenic	Intergenic	-61855	NM_153840	266977	Hs.733762	NM_025048	HPRD:08661	GPR110	KPG_012|PGR19|hGPCR36	G protein-coupled receptor 110	protein-coding
19-PTNLD28-TUMOR_peak_26716	chr12	121476666	121477262	+	13.36930	NA	promoter-TSS (NM_198213)	promoter-TSS (NM_198213)	81	NM_001261825	8638	Hs.118633	NM_003733	HPRD:04473	OASL	OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase-like	protein-coding
19-PTNLD28-TUMOR_peak_47180	chr19	10304463	10304652	+	13.36930	NA	intron (NM_001379, intron 1 of 39)	intron (NM_001379, intron 1 of 39)	1198	NM_001379	1786	Hs.202672	NM_001379	HPRD:00532	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT	DNA (cytosine-5-)-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_109766	chrX	150068015	150068160	+	13.36930	NA	promoter-TSS (NM_001184808)	promoter-TSS (NM_001184808)	-798	NM_134446	83692	Hs.522805	NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule-like 2	protein-coding
19-PTNLD28-TUMOR_peak_38023	chr16	57299036	57299190	+	13.36930	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	19471	NM_015993	51090	Hs.632215	NM_015993	HPRD:11854	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
19-PTNLD28-TUMOR_peak_82246	chr5	133860955	133861163	+	13.36875	NA	promoter-TSS (NM_015288)	promoter-TSS (NM_015288)	-281	NM_001289985	23338	Hs.732155	NM_015288	HPRD:15124	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
19-PTNLD28-TUMOR_peak_2745	chr1	40840027	40840284	+	13.36671	NA	promoter-TSS (NM_001198978)	promoter-TSS (NM_001198978)	-150	NM_001198978	64744	Hs.15200	NM_022733	HPRD:12442	SMAP2	SMAP1L	small ArfGAP2	protein-coding
19-PTNLD28-TUMOR_peak_54531	chr2	101680310	101680488	+	13.36671	NA	intron (NM_001102426, intron 2 of 19)	intron (NM_001102426, intron 2 of 19)	61708	NM_001098577	6160	Hs.469473	NM_000993	HPRD:17994	RPL31	L31	ribosomal protein L31	protein-coding
19-PTNLD28-TUMOR_peak_48148	chr19	19471961	19472231	+	13.36671	NA	Intergenic	L1MB5|LINE|L1	-24546	NM_017660	54815	Hs.118964	NM_017660	HPRD:11741	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_12566	chr10	27444905	27445067	+	13.36557	NA	intron (NM_001172303, intron 1 of 11)	AluY|SINE|Alu	1233	NM_032844	84930	Hs.276905	NM_032844	HPRD:10499	MASTL	GREATWALL|GW|GWL|MAST-L|THC2|hGWL	microtubule associated serine/threonine kinase-like	protein-coding
19-PTNLD28-TUMOR_peak_82404	chr5	136958578	136958825	+	13.36507	NA	intron (NM_001257194, intron 14 of 14)	intron (NM_001257194, intron 14 of 14)	24637	NR_030588	100126343		NR_030588		MIR874	MIRN874|hsa-mir-874	microRNA 874	ncRNA
19-PTNLD28-TUMOR_peak_100903	chr8	129909170	129909293	+	13.36507	NA	Intergenic	L1PA2|LINE|L1	-332306	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_69566	chr3	106959477	106959882	+	13.36507	NA	promoter-TSS (NR_028303)	promoter-TSS (NR_028303)	140	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	LINC00883	-	long intergenic non-protein coding RNA 883	ncRNA
19-PTNLD28-TUMOR_peak_83815	chr5	169228643	169228764	+	13.36507	NA	intron (NM_004946, intron 25 of 51)	MLT1N2|LTR|ERVL-MaLR	164452	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_94733	chr7	106264407	106264531	+	13.36507	NA	Intergenic	Intergenic	37165	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_37076	chr16	28869735	28869945	+	13.36402	NA	Intergenic	AluSx|SINE|Alu	-5238	NM_001145795	25970	Hs.15744	NM_015503	HPRD:12336	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_19789	chr11	71316158	71316476	+	13.36402	NA	Intergenic	Intergenic	-22396	NM_001005405	440051	Hs.679617	NM_001005405	HPRD:17248	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
19-PTNLD28-TUMOR_peak_10730	chr1	229405584	229405766	+	13.36369	NA	Intergenic	Intergenic	-1134	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_75289	chr4	52710818	52711099	+	13.36271	NA	intron (NM_001287755, intron 1 of 10)	CpG	1213	NM_001287755	23142	Hs.605388	NM_015115	HPRD:13791	DCUN1D4	-	DCN1, defective in cullin neddylation 1, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_3946	chr1	61902366	61902698	+	13.36014	NA	intron (NM_001145511, intron 10 of 10)	intron (NM_001145511, intron 10 of 10)	-183342	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15292	chr10	103539760	103539870	+	13.36014	NA	intron (NM_001206389, intron 1 of 4)	CpG	311	NM_001206389	2253	Hs.57710	NM_006119		FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8 (androgen-induced)	protein-coding
19-PTNLD28-TUMOR_peak_101439	chr8	142094373	142094780	+	13.35166	NA	Intergenic	Intergenic	-44144	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_105772	chr9	122131443	122131859	+	13.35166	NA	promoter-TSS (NM_014618)	promoter-TSS (NM_014618)	88	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_32898	chr15	32270012	32270275	+	13.35166	NA	Intergenic	Intergenic	-52543	NM_000746	1139	Hs.511772	NM_000746		CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor, nicotinic, alpha 7 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_102675	chr9	33151100	33151503	+	13.35166	NA	intron (NM_001497, intron 1 of 5)	intron (NM_001497, intron 1 of 5)	-15645	NR_108110	101929639	Hs.545818	NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58862	chr2	232826058	232826450	+	13.35166	NA	promoter-TSS (NM_152383)	promoter-TSS (NM_152383)	-39	NM_152383	129563	Hs.732236	NM_152383	HPRD:14619	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_41893	chr17	44650158	44650294	+	13.35166	NA	intron (NM_001288812, intron 2 of 4).2	AluSz|SINE|Alu	6862	NM_001288812	51326	Hs.559259	NM_016632	HPRD:17424	ARL17A	ARF1P2|ARL17P1	ADP-ribosylation factor-like 17A	protein-coding
19-PTNLD28-TUMOR_peak_99947	chr8	105235885	105236276	+	13.35166	NA	intron (NM_001282882, intron 1 of 5)	intron (NM_001282882, intron 1 of 5)	517	NM_001282882	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_91120	chr7	5742620	5742787	+	13.35166	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	8838	NR_106934	102466203		NR_106934		MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
19-PTNLD28-TUMOR_peak_16950	chr11	8190200	8190696	+	13.35166	NA	exon (NM_001135109, exon 1 of 2)	exon (NM_001135109, exon 1 of 2)	142	NM_001206671	79608	Hs.231850	NM_024557	HPRD:17974	RIC3	AYST720|PRO1385	RIC3 acetylcholine receptor chaperone	protein-coding
19-PTNLD28-TUMOR_peak_67529	chr3	37239277	37239826	+	13.35166	NA	Intergenic	Intergenic	-21700	NM_001134369	9209	Hs.740522	NM_006309	HPRD:10061	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86289	chr6	28048594	28048761	+	13.34655	NA	5' UTR (NM_003447, exon 1 of 4)	5' UTR (NM_003447, exon 1 of 4)	195	NM_003447	7718	Hs.55481	NM_003447	HPRD:02903	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_76601	chr4	111192082	111192219	+	13.34292	NA	Intergenic	Intergenic	-72330	NM_024090	79071	Hs.412939	NM_024090	HPRD:13269	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
19-PTNLD28-TUMOR_peak_41123	chr17	34611997	34612173	+	13.34292	NA	Intergenic	CpG	13636	NM_001001437	414062	Hs.454713	NM_001001437	HPRD:14426	CCL3L3	464.2|D17S1718|G0S19-2|LD78|LD78BETA|SCYA3L|SCYA3L1	chemokine (C-C motif) ligand 3-like 3	protein-coding
19-PTNLD28-TUMOR_peak_60152	chr20	22314881	22315037	+	13.34292	NA	Intergenic	Intergenic	-51520	NR_110615	101929663	Hs.143562	NR_110615	ENSG00000225321	LINC01427	-	long intergenic non-protein coding RNA 1427	ncRNA
19-PTNLD28-TUMOR_peak_88871	chr6	99841595	99842136	+	13.34292	NA	intron (NM_017421, intron 1 of 6)	CpG	217	NM_017421	51805	Hs.713623	NM_017421	HPRD:07283	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3 methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_54608	chr2	102953300	102953761	+	13.34292	NA	promoter-TSS (NM_003856)	promoter-TSS (NM_003856)	-180	NM_003856	9173	Hs.66	NM_003856	HPRD:03123	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96524	chr7	153170380	153170553	+	13.34292	NA	Intergenic	Intergenic	-61147	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_67350	chr3	30581365	30581474	+	13.34292	NA	Intergenic	Intergenic	-66575	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_21871	chr11	124804854	124805246	+	13.34292	NA	intron (NM_152722, intron 1 of 6)	intron (NM_152722, intron 1 of 6)	1258	NM_152722	220296	Hs.745294	NM_152722	HPRD:08068	HEPACAM	GlialCAM|MLC2A|MLC2B	hepatic and glial cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_51150	chr2	11724438	11724618	+	13.34292	NA	intron (NM_148903, intron 7 of 9)	intron (NM_148903, intron 7 of 9)	41677	NM_033090	9687	Hs.467733	NM_014668	HPRD:13611	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_104291	chr9	88936368	88936711	+	13.34292	NA	intron (NM_024617, intron 14 of 26)	AluSz|SINE|Alu	32863	NM_024617	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_91083	chr7	5527546	5527689	+	13.34292	NA	intron (NM_024963, intron 4 of 4)	intron (NM_024963, intron 4 of 4)	7931	NR_030318	693174		NR_030318		MIR589	MIRN589|hsa-mir-589	microRNA 589	ncRNA
19-PTNLD28-TUMOR_peak_34306	chr15	71006417	71006607	+	13.34292	NA	intron (NM_018003, intron 1 of 18)	intron (NM_018003, intron 1 of 18)	-11892	NM_001008224	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_81838	chr5	123463381	123463538	+	13.34292	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	310754	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_51893	chr2	29504511	29504676	+	13.34292	NA	intron (NM_004304, intron 9 of 28)	intron (NM_004304, intron 9 of 28)	166301	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_79634	chr5	40541878	40542009	+	13.34292	NA	Intergenic	L1PA2|LINE|L1	-138089	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_86372	chr6	29219616	29219838	+	13.34292	NA	Intergenic	HERVH-int|LTR|ERV1	-54740	NM_030946	442191	Hs.632004	NM_030946	HPRD:15053	OR14J1	OR5U1|OR6-25|bA150A6.4|hs6M1-28	olfactory receptor, family 14, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_94655	chr7	104909427	104909590	+	13.34195	NA	promoter-TSS (NM_182691)	promoter-TSS (NM_182691)	16	NM_182691	6733	Hs.285197	NM_182691	HPRD:04280	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_51899	chr2	29595109	29595308	+	13.34195	NA	intron (NM_004304, intron 5 of 28)	intron (NM_004304, intron 5 of 28)	256916	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_16964	chr11	8359731	8359843	+	13.34195	NA	Intergenic	Intergenic	-69605	NM_001270428	4004	Hs.654426	NM_002315	HPRD:01738	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
19-PTNLD28-TUMOR_peak_77687	chr4	154215886	154216101	+	13.34195	NA	intron (NM_015271, intron 5 of 11)	intron (NM_015271, intron 5 of 11)	13970	NR_001562	303	Hs.546235	NR_001562		ANXA2P1	ANX2L1|ANX2P1|LPC2A	annexin A2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_48731	chr19	36373129	36373255	+	13.34195	NA	Intergenic	MER91B|DNA|hAT-Tip100	13791	NM_005166	333	Hs.74565	NM_005166	HPRD:00102	APLP1	APLP	amyloid beta (A4) precursor-like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_84512	chr5	179511794	179512209	+	13.34195	NA	Intergenic	Intergenic	-12883	NM_018434	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_67359	chr3	30730392	30730590	+	13.34195	NA	intron (NM_001024847, intron 7 of 7)	intron (NM_001024847, intron 7 of 7)	82497	NM_003242	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_57649	chr2	198074553	198074900	+	13.34195	NA	intron (NM_001195144, intron 1 of 27)	intron (NM_001195144, intron 1 of 27)	92517	NR_046837	101927547	Hs.687027	NR_046837		ANKRD44-IT1	-	ANKRD44 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_1534	chr1	24513723	24513973	+	13.34195	NA	promoter-TSS (NM_173064)	promoter-TSS (NM_173064)	-83	NM_173064	163702	Hs.221375	NM_170743	HPRD:09589	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon, lambda receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_47280	chr19	11063565	11063693	+	13.34195	NA	Intergenic	Intergenic	-7969	NM_003072	6597	Hs.327527	NM_003072	HPRD:04459	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
19-PTNLD28-TUMOR_peak_9744	chr1	206643621	206643868	+	13.34117	NA	5' UTR (NM_014002, exon 1 of 22)	5' UTR (NM_014002, exon 1 of 22)	158	NM_001193322	9641	Hs.321045	NM_014002	HPRD:05442	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	protein-coding
19-PTNLD28-TUMOR_peak_16882	chr11	6625419	6625771	+	13.33780	NA	promoter-TSS (NM_015324)	promoter-TSS (NM_015324)	555	NM_001014795	3611	Hs.706355	NM_004517	HPRD:03842	ILK	HEL-S-28|ILK-1|ILK-2|P59|p59ILK	integrin-linked kinase	protein-coding
19-PTNLD28-TUMOR_peak_36573	chr16	18460996	18461196	+	13.33530	NA	Intergenic	Intergenic	12171	NR_107060	102465908		NR_107060		MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
19-PTNLD28-TUMOR_peak_58448	chr2	219745157	219745361	+	13.33502	NA	promoter-TSS (NM_025216)	promoter-TSS (NM_025216)	4	NM_025216	80326	Hs.121540	NM_025216	HPRD:16207	WNT10A	OODD|SSPS|STHAG4	wingless-type MMTV integration site family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_45912	chr18	55710798	55711052	+	13.33502	NA	promoter-TSS (NM_015277)	promoter-TSS (NM_015277)	-685	NM_015277	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_96103	chr7	144058586	144058700	+	13.33502	NA	intron (NM_005435, intron 1 of 14)	intron (NM_005435, intron 1 of 14)	6154	NM_005435	7984	Hs.334	NM_005435	HPRD:02932	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding
19-PTNLD28-TUMOR_peak_70482	chr3	126118303	126118510	+	13.33485	NA	intron (NM_182628, intron 2 of 16)	L1MB4|LINE|L1	4624	NM_182628	348807	Hs.591305	NM_182628	HPRD:08805	CCDC37	MIA1	coiled-coil domain containing 37	protein-coding
19-PTNLD28-TUMOR_peak_9202	chr1	201317350	201317450	+	13.33485	NA	Intergenic	Intergenic	29428	NM_001276346	7139	Hs.533613	NM_000364	HPRD:01844	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T type 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_109724	chrX	148962618	148962855	+	13.33485	NA	intron (NR_109813, intron 2 of 4)	LTR10C|LTR|ERV1	4103	NR_109813	101241891	Hs.744829	NR_109813		LINC00850	KUCG1	long intergenic non-protein coding RNA 850	ncRNA
19-PTNLD28-TUMOR_peak_95768	chr7	139304092	139304254	+	13.33144	NA	intron (NM_022740, intron 7 of 14)	intron (NM_022740, intron 7 of 14)	95499	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2, member L	protein-coding
19-PTNLD28-TUMOR_peak_75005	chr4	39543748	39544043	+	13.33144	NA	intron (NR_047679, intron 2 of 4)	HERVK3-int|LTR|ERVK	14436	NR_047679	100885776	Hs.640769	NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46442	chr18	77748968	77749101	+	13.33144	NA	promoter-TSS (NM_006701)	promoter-TSS (NM_006701)	-502	NM_006701	10907	Hs.465498	NM_006701	HPRD:18252	TXNL4A	DIB1|DIM1|HsT161|SNRNP15|TXNL4|U5-15kD	thioredoxin-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_30868	chr14	67826095	67826288	+	13.33144	NA	promoter-TSS (NM_004094)	promoter-TSS (NM_004094)	529	NM_015994	51382	Hs.272630	NM_015994		ATP6V1D	ATP6M|VATD|VMA8	ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	protein-coding
19-PTNLD28-TUMOR_peak_62590	chr20	62184099	62184328	+	13.32627	NA	promoter-TSS (NM_024059)	promoter-TSS (NM_024059)	-160	NM_024059	79025	Hs.197755	NM_024059	HPRD:14682	C20orf195	-	chromosome 20 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_38463	chr16	69107338	69107523	+	13.32351	NA	intron (NM_024562, intron 17 of 17)	L2c|LINE|L2	-32037	NM_001199280	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_49529	chr19	47260703	47260858	+	13.32351	NA	3' UTR (NM_001039885, exon 4 of 4)	3' UTR (NM_001039885, exon 4 of 4)	-11060	NM_001039877	29888	Hs.631590	NM_013403	HPRD:18125	STRN4	ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_84736	chr6	1596574	1596716	+	13.32351	NA	Intergenic	Intergenic	-9121	NR_125804	101927703	Hs.607964	NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_40939	chr17	29876683	29877420	+	13.32351	NA	Intergenic	Intergenic	-9964	NR_029710	406968		NR_029710	miRBase:MI0000487	MIR193A	MIRN193|MIRN193A	microRNA 193a	ncRNA
19-PTNLD28-TUMOR_peak_71535	chr3	146962951	146963850	+	13.32351	NA	Intergenic	LTR12C|LTR|ERV1	146817	NR_033119	84107	Hs.415766	NM_032153	HPRD:12340	ZIC4	-	Zic family member 4	protein-coding
19-PTNLD28-TUMOR_peak_56060	chr2	139720429	139720677	+	13.32351	NA	Intergenic	Intergenic	65659	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_58796	chr2	231917442	231917817	+	13.32185	NA	Intergenic	CpG	-3949	NM_001191037	5707	Hs.3887	NM_002807	HPRD:10169	PSMD1	P112|Rpn2|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding
19-PTNLD28-TUMOR_peak_105667	chr9	118352389	118352617	+	13.32185	NA	Intergenic	LTR78|LTR|ERV1	154015	NR_109805	101928775	Hs.522362	NR_109805		LOC101928775	-	uncharacterized LOC101928775	ncRNA
19-PTNLD28-TUMOR_peak_60520	chr20	31331095	31331779	+	13.32185	NA	5' UTR (NM_053041, exon 1 of 9)	5' UTR (NM_053041, exon 1 of 9)	377	NM_001099339	149951	Hs.408427	NM_053041	HPRD:13085	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_78208	chr4	183839034	183839220	+	13.32185	NA	promoter-TSS (NM_001921)	promoter-TSS (NM_001921)	-497	NM_001012732	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_7377	chr1	156877308	156877451	+	13.32185	NA	intron (NM_001080471, intron 6 of 22)	intron (NM_001080471, intron 6 of 22)	-13045	NM_144702	149499	Hs.491734	NM_144702	HPRD:08737	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
19-PTNLD28-TUMOR_peak_58797	chr2	231921573	231921923	+	13.32185	NA	non-coding (NR_034059, exon 1 of 24)	non-coding (NR_034059, exon 1 of 24)	170	NR_034059	5707	Hs.3887	NM_002807	HPRD:10169	PSMD1	P112|Rpn2|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding
19-PTNLD28-TUMOR_peak_85041	chr6	5458316	5458797	+	13.32185	NA	intron (NM_006567, intron 4 of 6)	intron (NM_006567, intron 4 of 6)	196972	NM_006567	10667	Hs.484547	NM_006567	HPRD:09946	FARS2	COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_3687	chr1	55410906	55411072	+	13.32185	NA	Intergenic	Intergenic	-35476	NM_182532	199964	Hs.663950	NM_182532	HPRD:14121	TMEM61	-	transmembrane protein 61	protein-coding
19-PTNLD28-TUMOR_peak_55934	chr2	136500125	136500274	+	13.32106	NA	intron (NM_014607, intron 1 of 12)	intron (NM_014607, intron 1 of 12)	1010	NM_014607	23190	Hs.591242	NM_014607	HPRD:18254	UBXN4	UBXD2|UBXDC1|erasin	UBX domain protein 4	protein-coding
19-PTNLD28-TUMOR_peak_37631	chr16	47175723	47175939	+	13.31511	NA	intron (NM_018092, intron 1 of 8)	intron (NM_018092, intron 1 of 8)	2105	NM_018092	81831	Hs.645802	NM_018092	HPRD:09721	NETO2	BTCL2|NEOT2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding
19-PTNLD28-TUMOR_peak_72835	chr3	185035545	185035782	+	13.31511	NA	intron (NM_001242317, intron 2 of 12)	intron (NM_001242317, intron 2 of 12)	34934	NR_038322	9175	Hs.591306	NM_004721	HPRD:05372	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_49653	chr19	48437237	48437449	+	13.30976	NA	promoter-TSS (NR_004435)	promoter-TSS (NR_004435)	-95	NR_004436	100126799	Hs.723085	NR_004436		SNAR-A2	SNAR-A53129250	small ILF3/NF90-associated RNA A2	snRNA
19-PTNLD28-TUMOR_peak_29200	chr13	114565496	114566178	+	13.30776	NA	intron (NM_000820, intron 2 of 14)	CpG	1209	NM_000820	2621	Hs.646346	NM_000820	HPRD:02705	GAS6	AXLLG|AXSF	growth arrest-specific 6	protein-coding
19-PTNLD28-TUMOR_peak_94820	chr7	108096489	108096778	+	13.30752	NA	intron (NM_005010, intron 1 of 27)	CpG	208	NM_001193584	4897	Hs.21422	NM_005010	HPRD:07207	NRCAM	-	neuronal cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_47020	chr19	8067292	8067543	+	13.30583	NA	intron (NM_001419, intron 1 of 5)	intron (NM_001419, intron 1 of 5)	3112	NM_001419	1994	Hs.184492	NM_001419	HPRD:16025	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_309	chr1	3827434	3827650	+	13.30150	NA	intron (NR_024455, intron 2 of 3)	intron (NR_024455, intron 2 of 3)	10574	NR_024455	100133612	Hs.307652	NR_024455	ENSG00000236423	LINC01134	-	long intergenic non-protein coding RNA 1134	ncRNA
19-PTNLD28-TUMOR_peak_74115	chr4	5520396	5520529	+	13.30150	NA	Intergenic	L1PA4|LINE|L1	-6421	NM_005750	10141	Hs.177972	NM_005750	HPRD:12826	C4orf6	aC1	chromosome 4 open reading frame 6	protein-coding
19-PTNLD28-TUMOR_peak_51366	chr2	18199043	18199219	+	13.30150	NA	Intergenic	L1PA2|LINE|L1	139207	NM_002252	3790	Hs.414489	NM_002252	HPRD:04865	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
19-PTNLD28-TUMOR_peak_11886	chr10	6689973	6690104	+	13.30150	NA	Intergenic	Intergenic	29360	NR_120634	101928150	Hs.576825	NR_120634		LOC101928150	-	uncharacterized LOC101928150	ncRNA
19-PTNLD28-TUMOR_peak_15823	chr10	117760854	117761131	+	13.30150	NA	Intergenic	Intergenic	270827	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_90287	chr6	158939308	158939801	+	13.30150	NA	Intergenic	Intergenic	-17914	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
19-PTNLD28-TUMOR_peak_56756	chr2	165753282	165753445	+	13.30150	NA	Intergenic	Intergenic	-54685	NM_001278460	22837	Hs.470457	NM_014900	HPRD:10844	COBLL1	COBLR1	cordon-bleu WH2 repeat protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_89017	chr6	109002991	109003133	+	13.30150	NA	3' UTR (NM_001455, exon 3 of 3)	3' UTR (NM_001455, exon 3 of 3)	-69795	NR_033376	387111	Hs.520310	NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
19-PTNLD28-TUMOR_peak_88472	chr6	80314501	80314658	+	13.30150	NA	Intergenic	MLT1G1-int|LTR|ERVL-MaLR	-26421	NM_031469	83699	Hs.302772	NM_031469	HPRD:15331	SH3BGRL2	-	SH3 domain binding glutamate-rich protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_53064	chr2	64569975	64570121	+	13.30150	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-111279	NM_014181	29094	Hs.372208	NM_014181	HPRD:13708	LGALSL	GRP	lectin, galactoside-binding-like	protein-coding
19-PTNLD28-TUMOR_peak_90463	chr6	165722633	165723229	+	13.30150	NA	intron (NM_144980, intron 1 of 8)	intron (NM_144980, intron 1 of 8)	180	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_53730	chr2	84929106	84929332	+	13.30150	NA	intron (NM_001370, intron 49 of 76)	intron (NM_001370, intron 49 of 76)	179150	NM_001080824	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_62099	chr20	52660887	52661016	+	13.30150	NA	intron (NM_003657, intron 3 of 11)	intron (NM_003657, intron 3 of 11)	24073	NR_039913	100616225		NR_039913	miRBase:MI0017397	MIR4756	-	microRNA 4756	ncRNA
19-PTNLD28-TUMOR_peak_84217	chr5	175607461	175607623	+	13.29647	NA	intron (NR_036494, intron 7 of 25)	intron (NR_036494, intron 7 of 25)	18756	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
19-PTNLD28-TUMOR_peak_40470	chr17	18380350	18380486	+	13.29647	NA	intron (NM_001040078, intron 1 of 10)	intron (NM_001040078, intron 1 of 10)	319	NM_001040078	654346	Hs.462402	NM_001040078	ENSG00000171916	LGALS9C	-	lectin, galactoside-binding, soluble, 9C	protein-coding
19-PTNLD28-TUMOR_peak_756	chr1	11382110	11382314	+	13.29647	NA	Intergenic	Intergenic	48957	NM_013319	29914	Hs.522933	NM_013319	HPRD:15487	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_970	chr1	15360006	15360118	+	13.29647	NA	intron (NM_001017999, intron 2 of 7)	L1MB8|LINE|L1	87647	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_71629	chr3	149260203	149260534	+	13.29647	NA	intron (NM_015472, intron 3 of 6)	intron (NM_015472, intron 3 of 6)	68000	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_7395	chr1	157132213	157132348	+	13.29647	NA	Intergenic	MER4D1|LTR|ERV1	-23897	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_64555	chr22	21837234	21837539	+	13.29632	NA	intron (NR_003700, intron 7 of 16)	intron (NR_003700, intron 7 of 16)	15927	NM_001207052	645426	Hs.376511	NM_001207052		TMEM191C	-	transmembrane protein 191C	protein-coding
19-PTNLD28-TUMOR_peak_54676	chr2	106127509	106127678	+	13.29632	NA	Intergenic	Intergenic	-72363	NM_201557	2274	Hs.443687	NM_001450	HPRD:04026	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
19-PTNLD28-TUMOR_peak_82078	chr5	131574058	131574284	+	13.29632	NA	Intergenic	Intergenic	-10615	NM_001142599	8974	Hs.519568	NM_004199	HPRD:11862	P4HA2	-	prolyl 4-hydroxylase, alpha polypeptide II	protein-coding
19-PTNLD28-TUMOR_peak_39312	chr16	87927648	87927889	+	13.29632	NA	intron (NM_001739, intron 5 of 6)	AluSz6|SINE|Alu	-24668	NM_003486	8140	Hs.513797	NM_003486	HPRD:02552	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	solute carrier family 7 (amino acid transporter light chain, L system), member 5	protein-coding
19-PTNLD28-TUMOR_peak_87364	chr6	40746058	40746176	+	13.29632	NA	Intergenic	Intergenic	-190991	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_101079	chr8	133592443	133592583	+	13.29632	NA	intron (NR_073525, intron 11 of 12)	L1MEg|LINE|L1	-18787	NR_026684	93668	Hs.545218	NR_026684	ENSG00000253521	HPYR1	HPRG1|LINC00027|NCRNA00027	Helicobacter pylori responsive 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49504	chr19	47049879	47050041	+	13.29632	NA	intron (NM_001205281, intron 1 of 3)	MLT1J2|LTR|ERVL-MaLR	-50791	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
19-PTNLD28-TUMOR_peak_45059	chr18	26744105	26744332	+	13.29632	NA	Intergenic	Intergenic	-986773	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_79179	chr5	17792365	17792531	+	13.29632	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-405029	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_67953	chr3	46970896	46971075	+	13.29632	NA	intron (NM_001277074, intron 2 of 6)	intron (NM_001277074, intron 2 of 6)	47006	NR_102269	151903	Hs.631918	NM_144716	HPRD:13007	CCDC12	-	coiled-coil domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_74851	chr4	26223408	26223596	+	13.29632	NA	Intergenic	Intergenic	-97830	NM_203283	3516	Hs.479396	NM_005349	HPRD:00920	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
19-PTNLD28-TUMOR_peak_7092	chr1	154653909	154654056	+	13.29632	NA	Intergenic	AluJb|SINE|Alu	-53526	NM_001025107	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_97704	chr8	23711645	23711931	+	13.29632	NA	intron (NM_003155, intron 1 of 3)	intron (NM_003155, intron 1 of 3)	532	NM_003155	6781	Hs.25590	NM_003155	HPRD:03115	STC1	STC	stanniocalcin 1	protein-coding
19-PTNLD28-TUMOR_peak_88192	chr6	64354975	64355196	+	13.29632	NA	intron (NM_001290260, intron 1 of 3)	intron (NM_001290260, intron 1 of 3)	-1346	NM_015153	23469	Hs.348921	NM_015153	HPRD:08477	PHF3	-	PHD finger protein 3	protein-coding
19-PTNLD28-TUMOR_peak_22500	chr12	2962880	2963025	+	13.29632	NA	intron (NR_038933, intron 2 of 3)	intron (NR_038933, intron 2 of 3)	16970	NR_038933	100507424	Hs.239	NR_038933	ENSG00000111203	LOC100507424	-	uncharacterized LOC100507424	ncRNA
19-PTNLD28-TUMOR_peak_57773	chr2	201697092	201697398	+	13.29632	NA	Intergenic	LTR50|LTR|ERVL	20189	NM_001207068	9689	Hs.355983	NM_014670	HPRD:16570	BZW1	BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_106616	chr9	136858553	136858738	+	13.29610	NA	Intergenic	CpG-27249	-1199	NM_001134398	7410	Hs.369921	NM_003371	HPRD:02694	VAV2	VAV-2	vav 2 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_47224	chr19	10590596	10590700	+	13.29610	NA	Intergenic	Intergenic	22833	NM_012289	9817	Hs.465870	NM_012289	HPRD:12079	KEAP1	INrf2|KLHL19	kelch-like ECH-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102360	chr9	19050740	19050869	+	13.29218	NA	3' UTR (NM_006570, exon 1 of 1)	3' UTR (NM_006570, exon 1 of 1)	1432	NM_006570	10670	Hs.743260	NM_006570	HPRD:10205	RRAGA	FIP-1|FIP1|RAGA	Ras-related GTP binding A	protein-coding
19-PTNLD28-TUMOR_peak_24747	chr12	57480948	57481081	+	13.28532	NA	Intergenic	CpG	-1663	NM_005967	4665	Hs.159223	NM_005967	HPRD:03854	NAB2	MADER	NGFI-A binding protein 2 (EGR1 binding protein 2)	protein-coding
19-PTNLD28-TUMOR_peak_88514	chr6	82811085	82811614	+	13.28481	NA	Intergenic	L1PA2|LINE|L1	146122	NM_015525	25998	Hs.306425	NM_015525	HPRD:12105	IBTK	BTBD26|BTKI	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_61799	chr20	48963097	48963317	+	13.28481	NA	Intergenic	Intergenic	-25328	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_83370	chr5	153775397	153775609	+	13.28481	NA	intron (NR_037897, intron 2 of 2)	MER5A|DNA|hAT-Charlie	49879	NR_037897	386627	Hs.652021	NR_037897		SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_47499	chr19	13200103	13200313	+	13.28375	NA	intron (NM_001271043, intron 9 of 10)	intron (NM_001271043, intron 9 of 10)	13766	NM_005583	4066	Hs.46446	NM_005583	HPRD:01046	LYL1	bHLHa18	lymphoblastic leukemia associated hematopoiesis regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_95181	chr7	128850452	128850575	+	13.28375	NA	intron (NM_005631, intron 9 of 11)	intron (NM_005631, intron 9 of 11)	-14342	NM_001130720	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_78287	chr4	185185442	185185643	+	13.28375	NA	Intergenic	Intergenic	-46428	NM_153343	133121	Hs.297814	NM_153343	HPRD:16863	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
19-PTNLD28-TUMOR_peak_65540	chr22	39269929	39270307	+	13.28375	NA	Intergenic	L2c|LINE|L2	-1860	NM_014292	23466	Hs.592201	NM_014292	HPRD:13005	CBX6	-	chromobox homolog 6	protein-coding
19-PTNLD28-TUMOR_peak_78294	chr4	185268634	185268794	+	13.28233	NA	intron (NR_040108, intron 2 of 2)	intron (NR_040108, intron 2 of 2)	6416	NR_040108	728175	Hs.590107	NR_040108	ENSG00000180712	LOC728175	-	uncharacterized LOC728175	ncRNA
19-PTNLD28-TUMOR_peak_83814	chr5	169228344	169228539	+	13.28233	NA	intron (NM_004946, intron 25 of 51)	MIR|SINE|MIR	164190	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_37476	chr16	33287378	33287600	+	13.28233	NA	Intergenic	CpG	11213	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_37465	chr16	33230839	33231061	+	13.28233	NA	Intergenic	CpG	25365	NM_001205259	653550	Hs.592038	NM_001205259	ENSG00000205457	TP53TG3C	TP53TG3	TP53 target 3C	protein-coding
19-PTNLD28-TUMOR_peak_16376	chr10	134923387	134923640	+	13.28233	NA	intron (NM_001083909, intron 5 of 6)	intron (NM_001083909, intron 5 of 6)	7763	NM_001291085	84435	Hs.435183	NM_032422	HPRD:17058	GPR123	-	G protein-coupled receptor 123	protein-coding
19-PTNLD28-TUMOR_peak_83708	chr5	167343333	167344035	+	13.28233	NA	intron (NM_001122679, intron 3 of 28)	intron (NM_001122679, intron 3 of 28)	315693	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_42072	chr17	46703860	46704128	+	13.28233	NA	promoter-TSS (NM_024017)	promoter-TSS (NM_024017)	-159	NM_024017	3219	Hs.463350	NM_024017	HPRD:00852	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
19-PTNLD28-TUMOR_peak_106264	chr9	131084678	131085233	+	13.28233	NA	promoter-TSS (NM_015679)	promoter-TSS (NM_015679)	164	NM_016035	51117	Hs.98541	NM_016035	HPRD:16741	COQ4	CGI-92	coenzyme Q4	protein-coding
19-PTNLD28-TUMOR_peak_29906	chr14	35816971	35817131	+	13.28115	NA	Intergenic	Intergenic	55528	NM_002791	5687	Hs.446260	NM_002791	HPRD:04171	PSMA6	IOTA|PROS27|p27K	proteasome (prosome, macropain) subunit, alpha type, 6	protein-coding
19-PTNLD28-TUMOR_peak_9124	chr1	200321267	200321565	+	13.28115	NA	intron (NR_040064, intron 4 of 4)	MIRc|SINE|MIR	21504	NR_040064	554279	Hs.434694	NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
19-PTNLD28-TUMOR_peak_67859	chr3	45267821	45267977	+	13.28115	NA	promoter-TSS (NM_015444)	promoter-TSS (NM_015444)	-85	NM_015444	25907	Hs.740403	NM_015444	HPRD:15252	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_17799	chr11	30607847	30607983	+	13.28115	NA	promoter-TSS (NM_001145399)	promoter-TSS (NM_001145399)	15	NM_001145399	744	Hs.289795	NM_001584	HPRD:02947	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_91645	chr7	24114625	24114934	+	13.28115	NA	Intergenic	Intergenic	-209028	NM_000905	4852	Hs.1832	NM_000905	HPRD:01214	NPY	PYY4	neuropeptide Y	protein-coding
19-PTNLD28-TUMOR_peak_86950	chr6	34597913	34598088	+	13.28115	NA	intron (NM_022758, intron 2 of 3)	MER44B|DNA|TcMar-Tigger	66627	NM_024294	64771	Hs.643498	NM_022758	HPRD:12837	C6orf106	FP852|dJ391O22.4	chromosome 6 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_61199	chr20	42473545	42473820	+	13.28115	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-69810	NM_001098797	84969	Hs.26608	NM_032883	HPRD:12734	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
19-PTNLD28-TUMOR_peak_59396	chr20	590972	591130	+	13.28115	NA	promoter-TSS (NM_004609)	promoter-TSS (NM_004609)	-141	NM_004609	6939	Hs.437	NM_004609		TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15 (basic helix-loop-helix)	protein-coding
19-PTNLD28-TUMOR_peak_106251	chr9	130953778	130953949	+	13.28115	NA	promoter-TSS (NM_001131017)	promoter-TSS (NM_001131017)	5	NM_001131016	25792	Hs.212395	NM_012127	HPRD:13061	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59724	chr20	8581137	8581365	+	13.28115	NA	intron (NM_015192, intron 3 of 31)	L1PA2|LINE|L1	468339	NM_015192	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_96710	chr7	157095164	157095414	+	13.28041	NA	Intergenic	Intergenic	-34421	NM_005494	10049	Hs.490745	NM_005494	HPRD:07107	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ (Hsp40) homolog, subfamily B, member 6	protein-coding
19-PTNLD28-TUMOR_peak_47371	chr19	11926160	11926304	+	13.27744	NA	intron (NM_152357, intron 1 of 3)	LTR10B1|LTR|ERV1	1125	NM_152357	126070	Hs.418192	NM_152357	HPRD:11718	ZNF440	-	zinc finger protein 440	protein-coding
19-PTNLD28-TUMOR_peak_76927	chr4	124319373	124319800	+	13.27744	NA	promoter-TSS (NM_001258039)	promoter-TSS (NM_001258039)	45	NM_001258039	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_74235	chr4	7105255	7105503	+	13.27730	NA	promoter-TSS (NR_027441)	promoter-TSS (NR_027441)	-276	NR_027441	730971	Hs.591718	NR_027441		FLJ36777	-	uncharacterized LOC730971	ncRNA
19-PTNLD28-TUMOR_peak_82550	chr5	139039770	139040005	+	13.26779	NA	intron (NM_016463, intron 1 of 2)	intron (NM_016463, intron 1 of 2)	11586	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_104473	chr9	92147533	92147702	+	13.26067	NA	Intergenic	Intergenic	-53006	NM_001142287	10507	Hs.494406	NM_006378	HPRD:03520	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding
19-PTNLD28-TUMOR_peak_16017	chr10	123686873	123687256	+	13.26067	NA	promoter-TSS (NR_120495)	promoter-TSS (NR_120495)	514	NM_007041	11101	Hs.632080	NM_007041	HPRD:06979	ATE1	-	arginyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_35898	chr16	3089622	3089744	+	13.26067	NA	TTS (NR_047572)	TTS (NR_047572)	-4141	NM_001103175	146439	Hs.513285	NM_001103175	ENSG00000162069	CCDC64B	BICDR-2	coiled-coil domain containing 64B	protein-coding
19-PTNLD28-TUMOR_peak_74023	chr4	3829603	3829849	+	13.26041	NA	Intergenic	Intergenic	61430	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_90732	chr7	362164	362288	+	13.25137	NA	Intergenic	CpG	32090	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
19-PTNLD28-TUMOR_peak_49848	chr19	50006422	50006569	+	13.25137	NA	Intergenic	AluSz|SINE|Alu	-2370	NR_029703	406942		NR_029703	miRBase:MI0000479	MIR150	MIRN150|miRNA150	microRNA 150	ncRNA
19-PTNLD28-TUMOR_peak_12798	chr10	32048088	32048234	+	13.25119	NA	Intergenic	Eulor8|DNA|TcMar?	149693	NM_001270699	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_69829	chr3	112498989	112499242	+	13.24941	NA	Intergenic	Intergenic	-30949	NR_110017	101929694	Hs.385630	NR_110017	ENSG00000240893	LOC101929694	-	uncharacterized LOC101929694	ncRNA
19-PTNLD28-TUMOR_peak_87130	chr6	36721805	36722090	+	13.24941	NA	intron (NM_020939, intron 13 of 20)	MER5B|DNA|hAT-Charlie	56319	NM_001257357	401258	Hs.485258	NM_207498		RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_59352	chr2	243030205	243030591	+	13.24567	NA	promoter-TSS (NR_024437)	promoter-TSS (NR_024437)	-446	NR_024437	728323	Hs.471887	NR_024437		LOC728323	-	uncharacterized LOC728323	ncRNA
19-PTNLD28-TUMOR_peak_50793	chr2	1597520	1597742	+	13.24567	NA	Intergenic	Intergenic	150688	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_98728	chr8	52771422	52771796	+	13.24119	NA	intron (NM_001286783, intron 1 of 5)	intron (NM_001286783, intron 1 of 5)	40137	NM_001286782	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_56703	chr2	163566913	163567247	+	13.24119	NA	intron (NM_033272, intron 2 of 15)	intron (NM_033272, intron 2 of 15)	-58366	NR_110258	101929570	Hs.470445	NR_110258	ENSG00000237750	LOC101929570	-	uncharacterized LOC101929570	ncRNA
19-PTNLD28-TUMOR_peak_72688	chr3	183013090	183013347	+	13.24119	NA	exon (NM_015078, exon 13 of 30)	exon (NM_015078, exon 13 of 30)	42186	NM_032047	84002	Hs.718506	NM_032047	HPRD:12511	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_55985	chr2	137936568	137936938	+	13.24119	NA	intron (NM_001080427, intron 6 of 26)	intron (NM_001080427, intron 6 of 26)	188291	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_10945	chr1	233824790	233824906	+	13.24119	NA	Intergenic	LTR7|LTR|ERV1	64950	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
19-PTNLD28-TUMOR_peak_73427	chr3	194651323	194651813	+	13.24119	NA	Intergenic	Intergenic	-163749	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51678	chr2	26828358	26828494	+	13.24119	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	35785	NM_001029881	130106	Hs.591579	NM_001029881	HPRD:18726	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
19-PTNLD28-TUMOR_peak_9177	chr1	201146217	201146403	+	13.24119	NA	Intergenic	Intergenic	-5600	NM_001288564	252839	Hs.181444	NM_016456	HPRD:15542	TMEM9	TMEM9A	transmembrane protein 9	protein-coding
19-PTNLD28-TUMOR_peak_49091	chr19	41098205	41098320	+	13.24119	NA	promoter-TSS (NM_003573)	promoter-TSS (NM_003573)	-810	NM_003573	8425	Hs.466766	NM_003573	HPRD:05274	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_106979	chrUn_gl000211	41683	41848	+	13.24105	NA	Intergenic	AluJo|SINE|Alu	-6738	NR_033856	644316	Hs.632789	NR_033856		FLJ43315	-	asparagine synthetase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65191	chr22	32598544	32598663	+	13.24105	NA	promoter-TSS (NM_001159546)	promoter-TSS (NM_001159546)	-66	NM_001159546	10739	Hs.157427	NM_006605	HPRD:09338	RFPL2	RNF79	ret finger protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_43879	chr17	78193936	78194338	+	13.24105	NA	promoter-TSS (NM_000199)	promoter-TSS (NM_000199)	62	NM_000199	6448	Hs.31074	NM_000199	HPRD:05590	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
19-PTNLD28-TUMOR_peak_94499	chr7	102031301	102031472	+	13.24105	NA	intron (NR_038967, intron 4 of 8)	intron (NR_038967, intron 4 of 8)	-5418	NM_024653	79706	Hs.722104	NM_024653	HPRD:11460	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1 (IL11 inducible)	protein-coding
19-PTNLD28-TUMOR_peak_14634	chr10	82295446	82295847	+	13.24105	NA	promoter-TSS (NR_120661)	promoter-TSS (NR_120661)	52	NR_120661	101929574	Hs.593663	NR_120661	ENSG00000226659	LOC101929574	-	uncharacterized LOC101929574	ncRNA
19-PTNLD28-TUMOR_peak_33196	chr15	40971391	40971596	+	13.24105	NA	Intergenic	L1MA3|LINE|L1	15810	NR_040058	100505648	Hs.586876	NR_040058	ENSG00000245849	RAD51-AS1	-	RAD51 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_73338	chr3	193855270	193855605	+	13.24060	NA	intron (NM_005524, intron 3 of 3)	CpG-19252	1506	NM_005524	3280	Hs.250666	NM_005524	HPRD:00770	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_106174	chr9	130336404	130336654	+	13.23579	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	4757	NM_001035534	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_40644	chr17	21157477	21157660	+	13.23537	NA	promoter-TSS (NM_152914)	promoter-TSS (NM_152914)	-990	NM_152914	256302	Hs.654713	NM_152914	HPRD:17527	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83929	chr5	171478763	171478892	+	13.23537	NA	intron (NM_005990, intron 18 of 18)	intron (NM_005990, intron 18 of 18)	-44950	NM_033645	23291	Hs.484138	NM_012300	HPRD:07294	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_7955	chr1	166944985	166945273	+	13.23537	NA	promoter-TSS (NM_199351)	promoter-TSS (NM_199351)	310	NM_001286378	84944	Hs.651245	NM_032858	HPRD:08609	MAEL	CT128|SPATA35	maelstrom spermatogenic transposon silencer	protein-coding
19-PTNLD28-TUMOR_peak_55329	chr2	121003169	121003320	+	13.23537	NA	Intergenic	Intergenic	-7170	NM_002881	5899	Hs.469820	NM_002881	HPRD:01550	RALB	-	v-ral simian leukemia viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_83771	chr5	168394853	168395242	+	13.23537	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	-45185	NR_109897	728095	Hs.145601	NR_109897	ENSG00000248222	CTB-174D11.1	-	uncharacterized LOC728095	ncRNA
19-PTNLD28-TUMOR_peak_70154	chr3	122291917	122292226	+	13.23537	NA	3' UTR (NM_138287, exon 5 of 5)	3' UTR (NM_138287, exon 5 of 5)	-4378	NM_001113523	165631	Hs.120250	NM_152615	HPRD:08811	PARP15	ARTD7|BAL3|pART7	poly (ADP-ribose) polymerase family, member 15	protein-coding
19-PTNLD28-TUMOR_peak_37985	chr16	56701909	56702235	+	13.23537	NA	promoter-TSS (NM_001301267)	promoter-TSS (NM_001301267)	-95	NM_005950	4495	Hs.433391	NM_005950	HPRD:11827	MT1G	MT1|MT1K	metallothionein 1G	protein-coding
19-PTNLD28-TUMOR_peak_91655	chr7	24796734	24797631	+	13.23537	NA	promoter-TSS (NM_001127453)	promoter-TSS (NM_001127453)	-99	NM_001127453	1687	Hs.520708	NM_004403	HPRD:02996	DFNA5	ICERE-1	deafness, autosomal dominant 5	protein-coding
19-PTNLD28-TUMOR_peak_109482	chrX	131353436	131353563	+	13.23537	NA	promoter-TSS (NM_001271186)	promoter-TSS (NM_001271186)	9	NM_001271186	57826	Hs.119889	NM_021183	HPRD:06706	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_25763	chr12	98897184	98897376	+	13.23537	NA	intron (NR_038383, intron 1 of 3)	intron (NR_038383, intron 1 of 3)	353	NR_038383	643770	Hs.129589	NR_038383	ENSG00000245017	LOC643770	-	uncharacterized LOC643770	ncRNA
19-PTNLD28-TUMOR_peak_20003	chr11	74161342	74161749	+	13.23537	NA	Intergenic	Intergenic	17055	NM_005472	10008	Hs.523899	NM_005472	HPRD:07256	KCNE3	HOKPP|HYPP|MiRP2	potassium voltage-gated channel, Isk-related family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_18420	chr11	46715192	46715367	+	13.23537	NA	intron (NM_004308, intron 3 of 12)	intron (NM_004308, intron 3 of 12)	6936	NM_004308	392	Hs.138860	NM_004308	HPRD:04108	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_77729	chr4	155412216	155412557	+	13.23537	NA	exon (NM_001142552, exon 1 of 8)	exon (NM_001142552, exon 1 of 8)	491	NM_001142552	54798	Hs.655664	NM_017639	HPRD:10858	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
19-PTNLD28-TUMOR_peak_39261	chr16	87351407	87351591	+	13.23488	NA	promoter-TSS (NM_001195124)	promoter-TSS (NM_001195124)	-473	NM_001195124	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_25486	chr12	85305169	85305528	+	13.23162	NA	intron (NM_018057, intron 1 of 4)	CpG	1260	NM_018057	55117	Hs.44424	NM_018057	HPRD:12141	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 (neutral amino acid transporter), member 15	protein-coding
19-PTNLD28-TUMOR_peak_102474	chr9	21986886	21987056	+	13.23162	NA	intron (NM_058195, intron 1 of 2)	intron (NM_058195, intron 1 of 2)	7519	NM_058195	1029	Hs.512599	NM_000077	HPRD:02542	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin-dependent kinase inhibitor 2A	protein-coding
19-PTNLD28-TUMOR_peak_4248	chr1	68348895	68349047	+	13.23162	NA	intron (NR_040077, intron 1 of 9)	L2a|LINE|L2	-49816	NM_018841	55970	Hs.431101	NM_018841	HPRD:13592	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
19-PTNLD28-TUMOR_peak_100966	chr8	131292692	131292845	+	13.23162	NA	intron (NM_018482, intron 3 of 29)	intron (NM_018482, intron 3 of 29)	16011	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_39706	chr17	2468214	2468486	+	13.23162	NA	Intergenic	Intergenic	-28573	NM_000430	5048	Hs.77318	NM_000430	HPRD:03329	PAFAH1B1	LIS1|LIS2|MDCR|MDS|PAFAH	platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	protein-coding
19-PTNLD28-TUMOR_peak_417	chr1	6972807	6972953	+	13.23162	NA	intron (NM_015215, intron 3 of 22)	intron (NM_015215, intron 3 of 22)	127496	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_19971	chr11	73642421	73642645	+	13.23162	NA	Intergenic	Intergenic	-18831	NM_153614	374407	Hs.567888	NM_153614	HPRD:15573	DNAJB13	RSPH16A|TSARG5|TSARG6	DnaJ (Hsp40) homolog, subfamily B, member 13	protein-coding
19-PTNLD28-TUMOR_peak_508	chr1	8277260	8277663	+	13.23162	NA	Intergenic	CpG	-100684	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_38119	chr16	58370630	58370804	+	13.23162	NA	Intergenic	Intergenic	-41766	NM_001080492	221191	Hs.411239	NM_001080492	ENSG00000103023	PRSS54	KLKBL4	protease, serine, 54	protein-coding
19-PTNLD28-TUMOR_peak_65816	chr22	43649919	43650100	+	13.23162	NA	intron (NM_173050, intron 6 of 21)	intron (NM_173050, intron 6 of 21)	-66872	NM_015140	23170	Hs.517670	NM_015140	HPRD:13782	TTLL12	dJ526I14.2	tubulin tyrosine ligase-like family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_58132	chr2	210199290	210199472	+	13.23162	NA	Intergenic	Intergenic	-89390	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_104733	chr9	97662936	97663312	+	13.23162	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	90880	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_102243	chr9	14780424	14780675	+	13.23162	NA	intron (NM_144966, intron 25 of 37)	intron (NM_144966, intron 25 of 37)	-1018	NM_001177704	158326	Hs.50850	NM_144966	HPRD:09865	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
19-PTNLD28-TUMOR_peak_38133	chr16	58521740	58521867	+	13.23162	NA	intron (NM_022910, intron 2 of 15)	CpG-9351	-12244	NM_001242835	65009	Hs.322430	NM_020465	HPRD:14817	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
19-PTNLD28-TUMOR_peak_26337	chr12	112016027	112016170	+	13.23162	NA	intron (NM_002973, intron 1 of 24)	Tigger3b|DNA|TcMar-Tigger	21382	NM_002973	6311	Hs.76253	NM_002973	HPRD:03307	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
19-PTNLD28-TUMOR_peak_108196	chrX	47648536	47648891	+	13.23162	NA	Intergenic	L1PA2|LINE|L1	-47588	NM_007137	347344	Hs.114246	NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
19-PTNLD28-TUMOR_peak_91999	chr7	35521782	35522049	+	13.23162	NA	Intergenic	LTR67B|LTR|ERVL	168449	NR_038864	401324	Hs.377034	NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
19-PTNLD28-TUMOR_peak_40209	chr17	10748535	10748715	+	13.23162	NA	Intergenic	Intergenic	-7207	NM_001101387	644139	Hs.553909	NM_001101387	ENSG00000233670	PIRT	-	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding
19-PTNLD28-TUMOR_peak_97113	chr8	10389600	10389774	+	13.23162	NA	intron (NM_001197020, intron 3 of 4)	intron (NM_001197020, intron 3 of 4)	6631	NM_198464	203074	Hs.591394	NM_198464	HPRD:07162	PRSS55	CT153|T-SP1|TSP1|UNQ9391	protease, serine, 55	protein-coding
19-PTNLD28-TUMOR_peak_47415	chr19	12511068	12511339	+	13.22823	NA	intron (NM_001080821, intron 1 of 3)	LTR26E|LTR|ERV1	885	NM_001080821	90576	Hs.546637	NM_203381	ENSG00000196466	ZNF799	HIT-40|ZNF842	zinc finger protein 799	protein-coding
19-PTNLD28-TUMOR_peak_84814	chr6	2794658	2794839	+	13.22823	NA	Intergenic	Intergenic	29082	NM_130395	56897	Hs.236828	NM_020135	HPRD:10494	WRNIP1	WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11682	chr10	3113773	3113887	+	13.22574	NA	intron (NM_001242339, intron 2 of 23)	intron (NM_001242339, intron 2 of 23)	3011	NM_001242339	5214	Hs.26010	NM_002627	HPRD:01384	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
19-PTNLD28-TUMOR_peak_39668	chr17	1958258	1958400	+	13.22574	NA	promoter-TSS (NM_006497)	promoter-TSS (NM_006497)	-64	NM_006497	3090	Hs.72956	NM_006497	HPRD:04826	HIC1	ZBTB29|ZNF901|hic-1	hypermethylated in cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_47741	chr19	15667190	15667422	+	13.22574	NA	Intergenic	Intergenic	47970	NM_173483	126410	Hs.156452	NM_173483	HPRD:08256	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450, family 4, subfamily F, polypeptide 22	protein-coding
19-PTNLD28-TUMOR_peak_38091	chr16	57932012	57932216	+	13.22574	NA	intron (NM_001297, intron 29 of 32)	intron (NM_001297, intron 29 of 32)	72906	NM_001135639	1258	Hs.147062	NM_001297	HPRD:07204	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel beta 1	protein-coding
19-PTNLD28-TUMOR_peak_18826	chr11	60917363	60917632	+	13.22574	NA	intron (NM_017966, intron 1 of 4)	intron (NM_017966, intron 1 of 4)	11419	NM_017966	55048	Hs.523715	NM_017966	HPRD:15652	VPS37C	-	vacuolar protein sorting 37 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_47835	chr19	16690280	16690427	+	13.22483	NA	intron (NM_004831, intron 1 of 2)	MIR|SINE|MIR	-7160	NM_024881	79939	Hs.620596	NM_024881	HPRD:15373	SLC35E1	-	solute carrier family 35, member E1	protein-coding
19-PTNLD28-TUMOR_peak_31324	chr14	75721194	75721564	+	13.22043	NA	Intergenic	Intergenic	-24102	NM_005252	2353	Hs.25647	NM_005252	HPRD:01275	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_17	chr1	335506	335629	+	13.21962	NA	Intergenic	AluSz|SINE|Alu	11675	NR_028322	100132287	Hs.446409	NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
19-PTNLD28-TUMOR_peak_84617	chr5	180762121	180762244	+	13.21962	NA	Intergenic	AluSz|SINE|Alu	11675	NR_028322	100132287	Hs.446409	NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
19-PTNLD28-TUMOR_peak_104859	chr9	100265926	100266032	+	13.21962	NA	intron (NM_003275, intron 1 of 9)	intron (NM_003275, intron 1 of 9)	2058	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_15257	chr10	102792139	102792288	+	13.21962	NA	5' UTR (NM_030971, exon 2 of 12)	5' UTR (NM_030971, exon 2 of 12)	1217	NM_030971	81855	Hs.283844	NM_030971	HPRD:15329	SFXN3	BA108L7.2|SFX3	sideroflexin 3	protein-coding
19-PTNLD28-TUMOR_peak_49285	chr19	44439147	44439534	+	13.21931	NA	promoter-TSS (NM_003425)	promoter-TSS (NM_003425)	71	NM_003425	7596	Hs.381285	NM_003425	HPRD:03469	ZNF45	KOX5|ZNF13	zinc finger protein 45	protein-coding
19-PTNLD28-TUMOR_peak_17824	chr11	31903502	31903702	+	13.21931	NA	intron (NR_033971, intron 1 of 2)	intron (NR_033971, intron 1 of 2)	55488	NR_117094	103157000		NR_117094		PAUPAR	-	PAX6 upstream antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_36680	chr16	20311725	20312032	+	13.21931	NA	Intergenic	MIR3|SINE|MIR	26957	NM_001007242	2813	Hs.53985	NM_001502	HPRD:04279	GP2	ZAP75	glycoprotein 2 (zymogen granule membrane)	protein-coding
19-PTNLD28-TUMOR_peak_12308	chr10	21561611	21561762	+	13.21931	NA	Intergenic	MIRb|SINE|MIR	98455	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96061	chr7	143230628	143230791	+	13.21931	NA	Intergenic	Intergenic	-38185	NM_001008747	441294	Hs.450233	NM_001008747	HPRD:17404	CTAGE15	CTAGE15P|cTAGE-15	CTAGE family, member 15	protein-coding
19-PTNLD28-TUMOR_peak_31782	chr14	93515848	93516000	+	13.21931	NA	intron (NM_001142593, intron 3 of 10)	L2|LINE|L2	-17873	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57152	chr2	177618549	177618839	+	13.21931	NA	Intergenic	Intergenic	116212	NR_110599	102724224	Hs.663125	NR_110599		LOC102724224	-	uncharacterized LOC102724224	ncRNA
19-PTNLD28-TUMOR_peak_13887	chr10	64832826	64832973	+	13.21931	NA	Intergenic	Intergenic	-60108	NM_001282405	29982	Hs.449628	NM_030759	HPRD:11401	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_11725	chr10	3761804	3761960	+	13.21931	NA	Intergenic	Intergenic	65591	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_22063	chr11	128729844	128729990	+	13.21931	NA	intron (NM_153766, intron 1 of 2)	intron (NM_153766, intron 1 of 2)	7351	NM_153767	3758	Hs.527830	NM_000220	HPRD:08981	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_89919	chr6	149555793	149555908	+	13.21931	NA	intron (NM_001292035, intron 1 of 5)	L3|LINE|CR1	16091	NM_001292035	23118	Hs.269775	NM_015093	HPRD:05483	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_8305	chr1	174841950	174842164	+	13.21931	NA	intron (NM_014857, intron 19 of 20)	intron (NM_014857, intron 19 of 20)	-1467	NM_001243763	9910	Hs.585378	NM_014857	HPRD:16464	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_20913	chr11	104034746	104035222	+	13.21931	NA	promoter-TSS (NM_025208)	promoter-TSS (NM_025208)	43	NM_033135	80310	Hs.352298	NM_025208	HPRD:17830	PDGFD	IEGF|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
19-PTNLD28-TUMOR_peak_50320	chr19	55470372	55470626	+	13.21931	NA	TTS (NR_046493)	TTS (NR_046493)	543	NR_046493	100873750		NR_046493		RNU6-35P	RNU6-35	RNA, U6 small nuclear 35, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_11644	chr10	1344323	1344435	+	13.21931	NA	intron (NM_018702, intron 3 of 9)	L1PA2|LINE|L1	138671	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
19-PTNLD28-TUMOR_peak_33890	chr15	63149767	63150048	+	13.21931	NA	Intergenic	MER5B|DNA|hAT-Charlie	33751	NR_029709	406965		NR_029709		MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190	microRNA 190a	ncRNA
19-PTNLD28-TUMOR_peak_81106	chr5	90224920	90225099	+	13.21931	NA	intron (NR_003149, intron 83 of 89)	L1PA2|LINE|L1	370392	NR_003149	84059	Hs.591777	NM_032119	HPRD:09111	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
19-PTNLD28-TUMOR_peak_102952	chr9	36748426	36748557	+	13.21931	NA	Intergenic	Intergenic	75105	NR_039686	100616289		NR_039686	miRBase:MI0016827	MIR4475	-	microRNA 4475	ncRNA
19-PTNLD28-TUMOR_peak_106751	chr9	139440579	139440989	+	13.21702	NA	promoter-TSS (NM_017617)	promoter-TSS (NM_017617)	-73	NR_039821	100616301		NR_039821	miRBase:MI0017305	MIR4674	-	microRNA 4674	ncRNA
19-PTNLD28-TUMOR_peak_87414	chr6	41395744	41396081	+	13.21702	NA	Intergenic	CpG	-74270	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_105428	chr9	114424246	114424599	+	13.21593	NA	intron (NM_001017998, intron 1 of 2)	L2|LINE|L2	571	NM_001017998	2790	Hs.534196	NM_001017998	ENSG00000242616	GNG10	-	guanine nucleotide binding protein (G protein), gamma 10	protein-coding
19-PTNLD28-TUMOR_peak_95978	chr7	142478535	142478709	+	13.21392	NA	promoter-TSS (NR_001296)	promoter-TSS (NR_001296)	-135	NR_001296	154754	Hs.449281	NR_001296	ENSG00000250606	PRSS3P2	T6|TRY6	protease, serine, 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_76156	chr4	87847634	87847850	+	13.20921	NA	intron (NR_038841, intron 2 of 2)	LTR32|LTR|ERVL	8260	NR_038841	100506746	Hs.657766	NR_038841	ENSG00000163633	LOC100506746	-	uncharacterized LOC100506746	ncRNA
19-PTNLD28-TUMOR_peak_98840	chr8	56015472	56015624	+	13.20921	NA	exon (NM_052898, exon 1 of 3)	exon (NM_052898, exon 1 of 3)	531	NM_052898	114786	Hs.130197	NM_052898		XKR4	XRG4	XK, Kell blood group complex subunit-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_88008	chr6	53171721	53171959	+	13.20796	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	30049	NR_049866	100847075		NR_049866	miRBase:MI0019287	MIR5685	-	microRNA 5685	ncRNA
19-PTNLD28-TUMOR_peak_41469	chr17	39834836	39835670	+	13.20682	NA	Intergenic	LTR73|LTR|ERV1	-9874	NM_005801	10209	Hs.150580	NM_005801		EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_72792	chr3	184267584	184268143	+	13.20682	NA	Intergenic	Intergenic	-11724	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_32717	chr15	28647312	28647419	+	13.20682	NA	Intergenic	AluY|SINE|Alu	23581	NR_033353	283768	Hs.169639	NM_001012420	HPRD:17331	GOLGA8G	-	golgin A8 family, member G	pseudo
19-PTNLD28-TUMOR_peak_72428	chr3	174249509	174249658	+	13.20682	NA	Intergenic	Intergenic	-327528	NM_207015	254827	Hs.565848	NM_207015	HPRD:16388	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_18921	chr11	61666658	61666816	+	13.20682	NA	intron (NM_001271686, intron 8 of 8)	intron (NM_001271686, intron 8 of 8)	-7720	NM_021727	3995	Hs.21765	NM_021727	HPRD:07547	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
19-PTNLD28-TUMOR_peak_70682	chr3	128943878	128944082	+	13.20682	NA	Intergenic	Intergenic	-24473	NM_016128	22820	Hs.518250	NM_016128	HPRD:09887	COPG1	COPG	coatomer protein complex, subunit gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_50376	chr19	55948869	55948994	+	13.20000	NA	intron (NM_001145176, intron 3 of 3)	intron (NM_001145176, intron 3 of 3)	5299	NM_001145176	729956	Hs.6664	NM_175908	ENSG00000187902	SHISA7	-	shisa family member 7	protein-coding
19-PTNLD28-TUMOR_peak_108282	chrX	49012584	49012811	+	13.20000	NA	Intergenic	CpG	-6484	NM_024859	79917	Hs.193170	NM_024859		MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_65610	chr22	40439115	40439399	+	13.19479	NA	Intergenic	AmnSINE1|SINE|Deu	-1564	NM_001024843	23112	Hs.372082	NM_015088	ENSG00000100354	TNRC6B	-	trinucleotide repeat containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_102676	chr9	33159875	33160103	+	13.19168	NA	intron (NM_001497, intron 1 of 5)	intron (NM_001497, intron 1 of 5)	-6957	NR_108110	101929639	Hs.545818	NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31529	chr14	81867892	81868068	+	13.18649	NA	intron (NM_001256430, intron 2 of 7)	intron (NM_001256430, intron 2 of 7)	25576	NM_033104	85439	Hs.14248	NM_033104	HPRD:10531	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
19-PTNLD28-TUMOR_peak_79502	chr5	36444699	36444828	+	13.18649	NA	Intergenic	LTR16C|LTR|ERVL	-142752	NM_145000	202151	Hs.729817	NM_145000	HPRD:08064	RANBP3L	-	RAN binding protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_71632	chr3	149272689	149272934	+	13.18649	NA	intron (NM_015472, intron 3 of 6)	intron (NM_015472, intron 3 of 6)	80443	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_109411	chrX	128799916	128800205	+	13.18649	NA	Intergenic	Intergenic	-11127	NM_017413	8862	Hs.303084	NM_017413	HPRD:02246	APLN	APEL|XNPEP2	apelin	protein-coding
19-PTNLD28-TUMOR_peak_41576	chr17	40985109	40985542	+	13.18649	NA	non-coding (NR_049772, exon 1 of 10)	non-coding (NR_049772, exon 1 of 10)	166	NM_176863	10197	Hs.152978	NM_005789	HPRD:05500	PSME3	HEL-S-283|Ki|PA28-gamma|PA28G|PA28gamma|REG-GAMMA	proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)	protein-coding
19-PTNLD28-TUMOR_peak_94924	chr7	116594244	116594529	+	13.18649	NA	promoter-TSS (NR_002330)	promoter-TSS (NR_002330)	2	NR_002330	93653	Hs.597516	NR_002330	ENSG00000227199	ST7-AS1	ST7AS1|ST7OT1	ST7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83187	chr5	149730204	149730377	+	13.18649	NA	Intergenic	Intergenic	-6912	NM_001135244	6949	Hs.519672	NM_000356	HPRD:06026	TCOF1	MFD1|TCS|TCS1|treacle	Treacher Collins-Franceschetti syndrome 1	protein-coding
19-PTNLD28-TUMOR_peak_44244	chr18	1522113	1522254	+	13.18649	NA	Intergenic	L1PA2|LINE|L1	-162553	NR_023926	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
19-PTNLD28-TUMOR_peak_87398	chr6	41149494	41149630	+	13.18649	NA	Intergenic	Intergenic	-18638	NM_001271821	54209	Hs.435295	NM_018965	HPRD:05473	TREM2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding
19-PTNLD28-TUMOR_peak_28310	chr13	52702953	52703303	+	13.18620	NA	promoter-TSS (NM_199289)	promoter-TSS (NM_199289)	86	NM_199289	341676	Hs.672144	NM_199289	ENSG00000197168	NEK5	-	NIMA-related kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_73476	chr3	195287033	195287204	+	13.18620	NA	Intergenic	Intergenic	-16894	NM_006241	5504	Hs.535731	NM_006241	HPRD:03478	PPP1R2	IPP-2|IPP2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_95500	chr7	134370051	134370249	+	13.18620	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	38619	NM_001293085	669	Hs.198365	NM_001724	HPRD:01961	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
19-PTNLD28-TUMOR_peak_27981	chr13	41885087	41885552	+	13.18620	NA	promoter-TSS (NM_018527)	promoter-TSS (NM_018527)	-22	NM_024561	79612	Hs.512914	NM_018527	HPRD:07977	NAA16	NARG1L	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_109226	chrX	114795359	114795496	+	13.18620	NA	5' UTR (NM_005032, exon 1 of 16)	5' UTR (NM_005032, exon 1 of 16)	250	NM_005032	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_74907	chr4	34183004	34183221	+	13.18620	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2062626	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
19-PTNLD28-TUMOR_peak_92655	chr7	55565366	55565748	+	13.18620	NA	intron (NM_001284284, intron 2 of 4)	intron (NM_001284284, intron 2 of 4)	39852	NM_001284284	81552	Hs.488307	NM_030796	HPRD:08526	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
19-PTNLD28-TUMOR_peak_60785	chr20	35034772	35034905	+	13.18620	NA	intron (NM_014902, intron 2 of 12)	intron (NM_014902, intron 2 of 12)	-54980	NM_001042486	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_13169	chr10	43429412	43429694	+	13.18620	NA	Intergenic	Intergenic	-63458	NR_049836	100847014		NR_049836	miRBase:MI0019116	MIR5100	-	microRNA 5100	ncRNA
19-PTNLD28-TUMOR_peak_95048	chr7	127031811	127032002	+	13.18550	NA	intron (NM_176814, intron 1 of 5)	CpG	861	NM_176814	168850	Hs.159006	NM_176814	HPRD:14112	ZNF800	-	zinc finger protein 800	protein-coding
19-PTNLD28-TUMOR_peak_47512	chr19	13280659	13280840	+	13.18459	NA	Intergenic	Intergenic	19467	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_48972	chr19	39600972	39601239	+	13.18394	NA	3' UTR (NM_001004318, exon 13 of 13)	3' UTR (NM_001004318, exon 13 of 13)	-15315	NM_001014834	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_73771	chr4	780789	781138	+	13.18394	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-5327	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	ncRNA
19-PTNLD28-TUMOR_peak_61321	chr20	43986115	43986350	+	13.17249	NA	Intergenic	MIRc|SINE|MIR	-4345	NM_001197129	90196	Hs.655055	NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	Sys1 golgi trafficking protein	protein-coding
19-PTNLD28-TUMOR_peak_48508	chr19	32896839	32897090	+	13.17054	NA	promoter-TSS (NM_207325)	promoter-TSS (NM_207325)	-58	NM_207325	147991	Hs.194392	NM_207325	HPRD:14078	DPY19L3	-	dpy-19-like 3 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_6717	chr1	150946330	150946572	+	13.17054	NA	intron (NM_181746, intron 1 of 10)	intron (NM_181746, intron 1 of 10)	1028	NM_022075	29956	Hs.744017	NM_013384	HPRD:06080	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_41991	chr17	45940502	45940678	+	13.17027	NA	Intergenic	Intergenic	-7350	NM_199262	80320	Hs.253603	NM_199262	HPRD:12269	SP6	EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_61325	chr20	44001406	44001566	+	13.17027	NA	intron (NR_003189, intron 3 of 5)	intron (NR_003189, intron 3 of 5)	5471	NM_014477	27296	Hs.710271	NM_014477	HPRD:12733	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
19-PTNLD28-TUMOR_peak_43601	chr17	74837660	74837951	+	13.17027	NA	Intergenic	Intergenic	-26993	NM_001199172	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_12437	chr10	24544209	24544371	+	13.17027	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	-20324	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_105418	chr9	114287319	114287494	+	13.17027	NA	promoter-TSS (NM_133464)	promoter-TSS (NM_133464)	-33	NM_001007169	158399	Hs.660784	NM_133464	HPRD:18345	ZNF483	ZKSCAN16|ZSCAN48	zinc finger protein 483	protein-coding
19-PTNLD28-TUMOR_peak_14566	chr10	81109545	81109720	+	13.17027	NA	intron (NM_005729, intron 3 of 5)	intron (NM_005729, intron 3 of 5)	2412	NM_005729	10105	Hs.381072	NM_005729	HPRD:06839	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19-PTNLD28-TUMOR_peak_49864	chr19	50181619	50181831	+	13.16906	NA	intron (NM_001207042, intron 1 of 7)	intron (NM_001207042, intron 1 of 7)	1316	NM_198318	3276	Hs.20521	NM_001536	HPRD:04257	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_103579	chr9	69664385	69664599	+	13.16725	NA	non-coding (NR_024443, exon 4 of 4)	non-coding (NR_024443, exon 4 of 4)	13131	NR_024443	100133920	Hs.645503	NR_024443		LOC100133920	-	uncharacterized LOC100133920	ncRNA
19-PTNLD28-TUMOR_peak_43270	chr17	71425649	71425783	+	13.16204	NA	intron (NM_001144952, intron 12 of 44)	intron (NM_001144952, intron 12 of 44)	-117573	NM_012121	23580	Hs.3903	NM_012121	HPRD:08383	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
19-PTNLD28-TUMOR_peak_27798	chr13	34392110	34392567	+	13.16204	NA	exon (NM_181558, exon 1 of 9)	exon (NM_181558, exon 1 of 9)	132	NM_181558	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_40973	chr17	30646575	30646686	+	13.16204	NA	intron (NM_138328, intron 8 of 8)	intron (NM_138328, intron 8 of 8)	22598	NM_022344	64149	Hs.655257	NM_022344		C17orf75	NJMU-R1	chromosome 17 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_27388	chr13	21591106	21591339	+	13.16204	NA	intron (NM_014572, intron 2 of 7)	intron (NM_014572, intron 2 of 7)	44500	NM_014572	26524	Hs.78960	NM_014572	HPRD:07277	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_49143	chr19	41689409	41689630	+	13.16204	NA	Intergenic	Intergenic	-9596	NM_030622	29785	Hs.98370	NM_030622	HPRD:07481	CYP2S1	-	cytochrome P450, family 2, subfamily S, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_20649	chr11	94618420	94618575	+	13.16204	NA	Intergenic	Intergenic	88279	NM_016403	51503	Hs.503597	NM_016403	HPRD:13703	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_29430	chr14	22860353	22860547	+	13.16204	NA	Intergenic	Intergenic	197693	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_40037	chr17	7895963	7896177	+	13.16204	NA	Intergenic	Intergenic	-9918	NM_000180	3000	Hs.592109	NM_000180	HPRD:02550	GUCY2D	CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, membrane (retina-specific)	protein-coding
19-PTNLD28-TUMOR_peak_33902	chr15	63278021	63278233	+	13.16204	NA	Intergenic	Intergenic	-56711	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_15631	chr10	112524214	112524347	+	13.16204	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	106382	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64003	chr21	46331606	46331767	+	13.16204	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	-9264	NR_038315	100505746	Hs.661035	NR_038311	ENSG00000227039	ITGB2-AS1	-	ITGB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3692	chr1	55446222	55446734	+	13.16204	NA	promoter-TSS (NM_182532)	promoter-TSS (NM_182532)	13	NM_182532	199964	Hs.663950	NM_182532	HPRD:14121	TMEM61	-	transmembrane protein 61	protein-coding
19-PTNLD28-TUMOR_peak_14492	chr10	79731119	79731329	+	13.16204	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	44654	NR_024585	100128292	Hs.547908	NR_024585		DLG5-AS1	-	DLG5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_13801	chr10	62249849	62250151	+	13.16204	NA	intron (NM_001204403, intron 2 of 43)	MER5A|DNA|hAT-Charlie	82714	NM_001204404	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_9664	chr1	205648977	205649406	+	13.16204	NA	intron (NM_033102, intron 1 of 4)	CpG	439	NM_033102	85414	Hs.278695	NM_033102	HPRD:16312	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45, member 3	protein-coding
19-PTNLD28-TUMOR_peak_24972	chr12	64514479	64514674	+	13.16204	NA	intron (NM_020762, intron 18 of 21)	L1MB1|LINE|L1	101500	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_52537	chr2	46049137	46049265	+	13.16204	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	170158	NM_005400	5581	Hs.580351	NM_005400	HPRD:01500	PRKCE	PKCE|nPKC-epsilon	protein kinase C, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_65436	chr22	38029645	38030381	+	13.16204	NA	TTS (NM_001172688)	TTS (NM_001172688)	-5671	NM_018957	23616	Hs.601143	NM_018957	HPRD:10227	SH3BP1	ARHGAP43	SH3-domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_26142	chr12	108871545	108871843	+	13.16204	NA	Intergenic	LTR9|LTR|ERV1	-4228	NR_120483	102723562	Hs.455693	NR_120483		LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
19-PTNLD28-TUMOR_peak_30883	chr14	68038145	68038382	+	13.16204	NA	intron (NM_020715, intron 9 of 28)	intron (NM_020715, intron 9 of 28)	28754	NM_004569	5283	Hs.553497	NM_004569	HPRD:02540	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding
19-PTNLD28-TUMOR_peak_51505	chr2	21619203	21619431	+	13.16204	NA	Intergenic	MIR3|SINE|MIR	314207	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LOC645949	-	uncharacterized LOC645949	ncRNA
19-PTNLD28-TUMOR_peak_100785	chr8	128064888	128065143	+	13.16204	NA	Intergenic	Intergenic	-27104	NR_109833	101867536	Hs.652970	NR_109833		PRNCR1	CARLo-3|PCAT8	prostate cancer associated non-coding RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26490	chr12	117058026	117058157	+	13.16204	NA	Intergenic	Intergenic	60905	NM_001085481	643246	Hs.506947	NM_001085481	ENSG00000171471	MAP1LC3B2	ATG8G	microtubule-associated protein 1 light chain 3 beta 2	protein-coding
19-PTNLD28-TUMOR_peak_37937	chr16	55746323	55746433	+	13.16204	NA	Intergenic	Intergenic	-12459	NR_033740	390732	Hs.554599	NR_033740		CES1P2	-	carboxylesterase 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_12658	chr10	29785440	29785604	+	13.16204	NA	intron (NM_003174, intron 16 of 35)	intron (NM_003174, intron 16 of 35)	48504	NR_030335	693189		NR_030335		MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA
19-PTNLD28-TUMOR_peak_91403	chr7	17442486	17442720	+	13.16204	NA	intron (NR_110015, intron 1 of 2)	intron (NR_110015, intron 1 of 2)	28062	NR_110015	102659288	Hs.559488	NR_110014		LOC102659288	-	uncharacterized LOC102659288	ncRNA
19-PTNLD28-TUMOR_peak_3148	chr1	45681949	45682088	+	13.16204	NA	Intergenic	Intergenic	-9768	NM_020883	57643	Hs.656613	NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger, SWIM-type containing 5	protein-coding
19-PTNLD28-TUMOR_peak_82491	chr5	138309989	138310269	+	13.16204	NA	intron (NM_022464, intron 7 of 9)	intron (NM_022464, intron 7 of 9)	-99072	NM_015564	26045	Hs.656653	NM_015564	HPRD:17454	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_16892	chr11	6834911	6835201	+	13.16204	NA	Intergenic	L1PA17|LINE|L1	-17917	NM_003696	8590	Hs.652252	NM_003696	HPRD:09771	OR6A2	I7|OR11-55|OR6A1|OR6A2P	olfactory receptor, family 6, subfamily A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_52370	chr2	43144636	43145003	+	13.16204	NA	Intergenic	Intergenic	121863	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_37856	chr16	53731307	53731411	+	13.16204	NA	intron (NM_015272, intron 2 of 26)	SVA_D|Other|Other	6412	NM_015272	23322	Hs.298382	NM_015272	HPRD:17204	RPGRIP1L	CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134	RPGRIP1-like	protein-coding
19-PTNLD28-TUMOR_peak_95326	chr7	130680163	130680287	+	13.16086	NA	intron (NR_109855, intron 2 of 4)	MIR|SINE|MIR	82002	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_30475	chr14	56442930	56443196	+	13.15928	NA	Intergenic	Intergenic	-142030	NM_021255	57161	Hs.657926	NM_021255	HPRD:17835	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_52421	chr2	43503934	43504131	+	13.15928	NA	intron (NM_022065, intron 36 of 37)	intron (NM_022065, intron 36 of 37)	49682	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_84525	chr5	179716615	179716774	+	13.15841	NA	intron (NM_002752, intron 1 of 11)	intron (NM_002752, intron 1 of 11)	2377	NM_139070	5601	Hs.484371	NM_002752	HPRD:04206	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_8792	chr1	183876353	183876492	+	13.15840	NA	intron (NM_001297671, intron 14 of 17)	L2a|LINE|L2	102207	NM_001297672	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
19-PTNLD28-TUMOR_peak_101056	chr8	133070022	133070215	+	13.15840	NA	intron (NM_001080399, intron 1 of 13)	intron (NM_001080399, intron 1 of 13)	1509	NM_001080399	729330	Hs.653174	NM_001080399	ENSG00000253117	OC90	PLA2L	otoconin 90	protein-coding
19-PTNLD28-TUMOR_peak_71748	chr3	151178635	151178841	+	13.15840	NA	Intergenic	CpG	-2241	NM_178822	285313	Hs.58561	NM_178822		IGSF10	CMF608	immunoglobulin superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_80221	chr5	62113527	62113670	+	13.15840	NA	Intergenic	L1PA2|LINE|L1	239036	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_3391	chr1	49038451	49038564	+	13.15840	NA	intron (NM_032785, intron 11 of 13)	intron (NM_032785, intron 11 of 13)	-100627	NM_019073	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_19115	chr11	63972105	63972322	+	13.15840	NA	TTS (NM_001282653)	TTS (NM_001282653)	-1939	NM_178443	83706	Hs.180535	NM_031471	HPRD:07440	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	fermitin family member 3	protein-coding
19-PTNLD28-TUMOR_peak_25967	chr12	105598776	105598959	+	13.15840	NA	intron (NM_001251904, intron 8 of 20)	intron (NM_001251904, intron 8 of 20)	28316	NM_001251905	55198	Hs.506603	NM_018171	HPRD:06945	APPL2	DIP13B	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding
19-PTNLD28-TUMOR_peak_11666	chr10	2563333	2563530	+	13.15840	NA	Intergenic	Intergenic	-206163	NR_038884	399708	Hs.521270	NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	ncRNA
19-PTNLD28-TUMOR_peak_94308	chr7	100067003	100067171	+	13.15780	NA	intron (NM_030935, intron 3 of 4)	intron (NM_030935, intron 3 of 4)	-5193	NM_001004323	402573	Hs.632306	NM_001004323	HPRD:17558	C7orf61	-	chromosome 7 open reading frame 61	protein-coding
19-PTNLD28-TUMOR_peak_36446	chr16	14826345	14826485	+	13.15622	NA	Intergenic	Intergenic	-18255	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_47094	chr19	8950140	8950403	+	13.15622	NA	Intergenic	L2a|LINE|L2	-2998	NM_145208	85509	Hs.133912	NM_145208	HPRD:12138	MBD3L1	MBD3L	methyl-CpG binding domain protein 3-like 1	protein-coding
19-PTNLD28-TUMOR_peak_156	chr1	1407738	1407988	+	13.15537	NA	intron (NM_031921, intron 1 of 15)	intron (NM_031921, intron 1 of 15)	699	NM_031921	83858	Hs.729021	NM_031921	HPRD:10679	ATAD3B	AAA-TOB3|TOB3	ATPase family, AAA domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_26340	chr12	112037270	112037677	+	13.15537	NA	promoter-TSS (NM_002973)	promoter-TSS (NM_002973)	7	NM_002973	6311	Hs.76253	NM_002973	HPRD:03307	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
19-PTNLD28-TUMOR_peak_99016	chr8	66860042	66860217	+	13.15537	NA	Intergenic	Intergenic	-73662	NM_033105	85479	Hs.491885	NM_033105	HPRD:07474	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
19-PTNLD28-TUMOR_peak_53529	chr2	74228423	74228622	+	13.15537	NA	intron (NM_001287491, intron 1 of 10)	MIR3|SINE|MIR	14991	NM_001287491	200424	Hs.516107	NM_144993	ENSG00000187605	TET3	-	tet methylcytosine dioxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_73389	chr3	194293752	194294281	+	13.14823	NA	Intergenic	Intergenic	-10981	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_47582	chr19	14064164	14064320	+	13.14596	NA	promoter-TSS (NM_001146254)	promoter-TSS (NM_001146254)	-38	NM_001146254	79883	Hs.448497	NM_024825	HPRD:08027	PODNL1	SLRR5B	podocan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_19457	chr11	67008526	67008823	+	13.14448	NA	intron (NM_001256405, intron 1 of 9)	intron (NM_001256405, intron 1 of 9)	1168	NM_001256405	22992	Hs.124147	NM_012308	HPRD:05741	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
19-PTNLD28-TUMOR_peak_54585	chr2	102604374	102604512	+	13.14377	NA	Intergenic	Intergenic	-3863	NM_004633	7850	Hs.25333	NM_004633	HPRD:00995	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor, type II	protein-coding
19-PTNLD28-TUMOR_peak_151	chr1	1369254	1369521	+	13.13877	NA	Intergenic	Intergenic	-1516	NM_199121	64856	Hs.449009	NM_022834	HPRD:18292	VWA1	WARP	von Willebrand factor A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_98469	chr8	42285917	42286102	+	13.13726	NA	intron (NM_001257180, intron 10 of 10)	intron (NM_001257180, intron 10 of 10)	36730	NM_001135694	7419	Hs.699301	NM_005662	HPRD:06750	VDAC3	HD-VDAC3|VDAC-3	voltage-dependent anion channel 3	protein-coding
19-PTNLD28-TUMOR_peak_38063	chr16	57668216	57668356	+	13.13726	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	-4921	NM_001145774	9289	Hs.513633	NM_005682	HPRD:06824	GPR56	BFPP|BPPR|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
19-PTNLD28-TUMOR_peak_101083	chr8	133687551	133688022	+	13.13726	NA	promoter-TSS (NR_073525)	promoter-TSS (NR_073525)	77	NR_073525	23639	Hs.591865	NM_012472	HPRD:10286	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
19-PTNLD28-TUMOR_peak_91513	chr7	20837758	20838213	+	13.13726	NA	Intergenic	CpG	-11477	NM_182700	221833	Hs.195922	NM_182700		SP8	BTD	Sp8 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_39570	chr17	693368	693549	+	13.13726	NA	intron (NM_018146, intron 3 of 3)	intron (NM_018146, intron 3 of 3)	-7887	NM_016080	51031	Hs.279061	NM_016080	HPRD:12678	GLOD4	C17orf25|HC71	glyoxalase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_4673	chr1	87246634	87246925	+	13.13726	NA	Intergenic	Intergenic	76526	NM_001206653	51100	Hs.136309	NM_016009	HPRD:15333	SH3GLB1	Bif-1|PPP1R70|dJ612B15.2	SH3-domain GRB2-like endophilin B1	protein-coding
19-PTNLD28-TUMOR_peak_60764	chr20	34685416	34685823	+	13.13666	NA	intron (NM_001258329, intron 1 of 22)	intron (NM_001258329, intron 1 of 22)	4987	NM_177996	2036	Hs.437422	NM_012156	HPRD:04193	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_58517	chr2	220406460	220406733	+	13.13624	NA	exon (NM_024536, exon 2 of 4)	exon (NM_024536, exon 2 of 4)	1223	NM_001195731	79586	Hs.516711	NM_024536	HPRD:10829	CHPF	CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
19-PTNLD28-TUMOR_peak_56966	chr2	172962009	172962201	+	13.13415	NA	Intergenic	Intergenic	5373	NM_004405	1746	Hs.419	NM_004405	HPRD:00527	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_68833	chr3	66023053	66023185	+	13.13297	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	1390	NM_015520	9223	Hs.476636	NM_004742	HPRD:04020	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58520	chr2	220416239	220416408	+	13.13297	NA	exon (NM_015311, exon 20 of 21)	exon (NM_015311, exon 20 of 21)	-2454	NR_036082	100423039		NR_036082	miRBase:MI0014152	MIR3132	-	microRNA 3132	ncRNA
19-PTNLD28-TUMOR_peak_63209	chr21	34144946	34145113	+	13.13297	NA	promoter-TSS (NM_016631)	promoter-TSS (NM_016631)	618	NR_024622	54067	Hs.54725	NM_001006116		C21orf49	-	chromosome 21 open reading frame 49	ncRNA
19-PTNLD28-TUMOR_peak_65393	chr22	37593255	37593420	+	13.13297	NA	Intergenic	Intergenic	-9007	NM_031910	114904	Hs.22011	NM_031910	HPRD:12718	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
19-PTNLD28-TUMOR_peak_95229	chr7	129493523	129493808	+	13.13254	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-78811	NR_029615	406959		NR_029615	miRBase:MI0000273	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
19-PTNLD28-TUMOR_peak_106369	chr9	132324197	132324468	+	13.13254	NA	Intergenic	Intergenic	-46831	NM_001286796	28989	Hs.744027	NM_014064	HPRD:10628	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_41310	chr17	37793274	37793584	+	13.13254	NA	promoter-TSS (NM_001165938)	promoter-TSS (NM_001165938)	96	NM_006804	10948	Hs.728838	NM_006804	HPRD:06132	STARD3	CAB1|MLN64|es64	StAR-related lipid transfer (START) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_74784	chr4	24972930	24973194	+	13.13254	NA	intron (NM_173463, intron 1 of 12)	LTR18A|LTR|ERVL	8764	NM_173463	91050	Hs.106432	NM_173463	HPRD:10908	CCDC149	-	coiled-coil domain containing 149	protein-coding
19-PTNLD28-TUMOR_peak_36584	chr16	18771308	18771457	+	13.13254	NA	Intergenic	Intergenic	30274	NM_001030009	6210	Hs.370504	NM_001019	HPRD:04723	RPS15A	S15a	ribosomal protein S15a	protein-coding
19-PTNLD28-TUMOR_peak_53177	chr2	66180202	66180426	+	13.13254	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	405146	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_75129	chr4	47838696	47838888	+	13.13254	NA	intron (NM_001278585, intron 1 of 19)	CpG	1331	NM_006587	10699	Hs.518618	NM_006587	HPRD:05573	CORIN	ATC2|CRN|Lrp4|PEE5|TMPRSS10	corin, serine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_73847	chr4	1630992	1631221	+	13.13254	NA	Intergenic	Intergenic	54612	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_49498	chr19	46991165	46991328	+	13.13254	NA	intron (NM_001205281, intron 3 of 3)	CpG	7923	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
19-PTNLD28-TUMOR_peak_32339	chr14	105669470	105669607	+	13.12487	NA	Intergenic	Intergenic	-21878	NM_177533	256281	Hs.526432	NM_177533	HPRD:14847	NUDT14	UGPP|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding
19-PTNLD28-TUMOR_peak_49651	chr19	48426860	48427047	+	13.12196	NA	promoter-TSS (NR_024227)	promoter-TSS (NR_024227)	-83	NR_024214	100169951	Hs.723094	NR_024214		SNAR-A3	-	small ILF3/NF90-associated RNA A3	snRNA
19-PTNLD28-TUMOR_peak_62833	chr21	17104784	17104899	+	13.12134	NA	intron (NM_001283041, intron 1 of 25)	intron (NM_001283041, intron 1 of 25)	2497	NM_001283041	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_14071	chr10	71596243	71596455	+	13.12134	NA	intron (NM_080798, intron 3 of 34)	intron (NM_080798, intron 3 of 34)	34705	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_60848	chr20	35569772	35570206	+	13.12134	NA	intron (NM_015474, intron 2 of 15)	Charlie13b|DNA|hAT-Charlie	10257	NM_015474	25939	Hs.580681	NM_015474	HPRD:08418	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88	SAM domain and HD domain 1	protein-coding
19-PTNLD28-TUMOR_peak_53463	chr2	73114891	73115204	+	13.12134	NA	intron (NM_003124, intron 1 of 2)	intron (NM_003124, intron 1 of 2)	535	NM_003124	6697	Hs.301540	NM_003124	HPRD:01632	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
19-PTNLD28-TUMOR_peak_39108	chr16	84684331	84684583	+	13.11977	NA	intron (NM_024731, intron 1 of 4)	intron (NM_024731, intron 1 of 4)	2326	NM_024731	79786	Hs.222731	NM_024731	HPRD:12675	KLHL36	C16orf44	kelch-like family member 36	protein-coding
19-PTNLD28-TUMOR_peak_106027	chr9	126981097	126981225	+	13.11977	NA	Intergenic	Intergenic	-38724	NM_001166167	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_84243	chr5	175970927	175971165	+	13.11908	NA	intron (NM_001171976, intron 1 of 31)	CpG	1534	NM_001171976	54825	Hs.4205	NM_017675	HPRD:15103	CDHR2	PCDH24|PCLKC	cadherin-related family member 2	protein-coding
19-PTNLD28-TUMOR_peak_29193	chr13	114520054	114520204	+	13.11883	NA	intron (NR_044995, intron 1 of 4)	intron (NR_044995, intron 1 of 4)	1546	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27791	chr13	34217560	34217764	+	13.11883	NA	intron (NM_001243476, intron 3 of 17)	MLT1M|LTR|ERVL-MaLR	33310	NM_001243476	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_80053	chr5	57183827	57183964	+	13.11883	NA	Intergenic	Intergenic	11094	NR_109900	101928539	Hs.639385	NR_109900	ENSG00000249584	LOC101928539	-	uncharacterized LOC101928539	ncRNA
19-PTNLD28-TUMOR_peak_19197	chr11	64661828	64661956	+	13.11883	NA	TTS (NM_015104)	TTS (NM_015104)	-2981	NR_029829	406970		NR_029829	miRBase:MI0000732	MIR194-2	MIRN194-2	microRNA 194-2	ncRNA
19-PTNLD28-TUMOR_peak_76265	chr4	91049637	91049972	+	13.11883	NA	intron (NM_001145065, intron 1 of 10)	intron (NM_001145065, intron 1 of 10)	1120	NM_001145065	401145	Hs.654735	NM_207491	HPRD:17561	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_72382	chr3	172314016	172314158	+	13.11883	NA	Intergenic	Intergenic	-72790	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_83165	chr5	149429945	149430111	+	13.11814	NA	intron (NM_014983, intron 19 of 19)	intron (NM_014983, intron 19 of 19)	36175	NM_001288705	1436	Hs.586219	NM_005211	HPRD:01269	CSF1R	C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_8811	chr1	184116428	184116750	+	13.11814	NA	Intergenic	Intergenic	95804	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_20924	chr11	104839153	104839480	+	13.11814	NA	promoter-TSS (NM_001225)	promoter-TSS (NM_001225)	9	NM_001225	837	Hs.138378	NM_001225	HPRD:04047	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1/TX|TX	caspase 4, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_71252	chr3	139649192	139649297	+	13.11814	NA	Intergenic	Intergenic	-4783	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_27263	chr12	132569403	132569635	+	13.11814	NA	intron (NR_003290, intron 1 of 9)	CpG	691	NR_003290	347918	Hs.122115	NM_182613	HPRD:13413	EP400NL	-	EP400 N-terminal like	pseudo
19-PTNLD28-TUMOR_peak_82070	chr5	131439125	131439342	+	13.11814	NA	Intergenic	Intergenic	29748	NM_000758	1437	Hs.1349	NM_000758	HPRD:00734	CSF2	GMCSF	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_48745	chr19	36486683	36486818	+	13.11814	NA	3' UTR (NM_001042631, exon 1 of 1)	3' UTR (NM_001042631, exon 1 of 1)	660	NM_001042631	644096	Hs.356460	NM_001042631	ENSG00000205138	SDHAF1	LYRM8	succinate dehydrogenase complex assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_1496	chr1	24195161	24195406	+	13.11814	NA	promoter-TSS (NM_000147)	promoter-TSS (NM_000147)	-424	NM_000147	2517	Hs.370858	NM_000147	HPRD:01974	FUCA1	FUCA	fucosidase, alpha-L- 1, tissue	protein-coding
19-PTNLD28-TUMOR_peak_59884	chr20	14207001	14207830	+	13.11814	NA	intron (NM_080676, intron 3 of 16)	LTR12C|LTR|ERV1	110898	NM_198391	23767	Hs.41296	NM_013281	HPRD:05313	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_88136	chr6	56760467	56760794	+	13.11814	NA	intron (NM_001144769, intron 3 of 96)	SVA_E|Other|Other	-43916	NM_001144770	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_88186	chr6	64283050	64283192	+	13.11347	NA	intron (NM_003463, intron 1 of 5)	CpG	1204	NM_003463	7803	Hs.227777	NM_003463	HPRD:03349	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
19-PTNLD28-TUMOR_peak_6322	chr1	145516709	145516864	+	13.11347	NA	promoter-TSS (NR_002328)	promoter-TSS (NR_002328)	155	NR_073493	8799	Hs.714608	NM_003846	HPRD:04844	PEX11B	PEX11-BETA|PEX14B	peroxisomal biogenesis factor 11 beta	protein-coding
19-PTNLD28-TUMOR_peak_26266	chr12	110719419	110719806	+	13.10576	NA	exon (NM_001681, exon 1 of 21)	exon (NM_001681, exon 1 of 21)	580	NM_170665	488	Hs.506759	NM_001681	HPRD:00161	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
19-PTNLD28-TUMOR_peak_61502	chr20	45976550	45977143	+	13.09832	NA	intron (NM_001281769, intron 1 of 3)	intron (NM_001281769, intron 1 of 3)	8787	NM_001281781	23613	Hs.446240	NM_012408	HPRD:10166	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger, MYND-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_20417	chr11	85885172	85885358	+	13.09751	NA	Intergenic	Intergenic	-70541	NM_152991	8726	Hs.503510	NM_003797	HPRD:09343	EED	HEED|WAIT1	embryonic ectoderm development	protein-coding
19-PTNLD28-TUMOR_peak_15431	chr10	105436862	105437071	+	13.09751	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	-69571	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_66209	chr3	3251516	3251700	+	13.09751	NA	Intergenic	Intergenic	-30207	NM_001173482	51185	Hs.18925	NM_016302	HPRD:16750	CRBN	MRT2|MRT2A	cereblon	protein-coding
19-PTNLD28-TUMOR_peak_75045	chr4	40527950	40528286	+	13.09751	NA	intron (NM_001098634, intron 2 of 6)	intron (NM_001098634, intron 2 of 6)	-10128	NM_019027	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
19-PTNLD28-TUMOR_peak_53927	chr2	87464798	87464980	+	13.09751	NA	Intergenic	Intergenic	-161353	NR_026846	285074	Hs.424184	NM_001012626	HPRD:17345	LOC285074	-	anaphase promoting complex subunit 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_25117	chr12	67939196	67939363	+	13.09751	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	25417	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
19-PTNLD28-TUMOR_peak_15951	chr10	121379818	121380207	+	13.09751	NA	Intergenic	Intergenic	-23471	NM_003252	7073	Hs.501203	NM_003252		TIAL1	TCBP|TIAR	TIA1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_56487	chr2	158687826	158688001	+	13.09751	NA	intron (NM_001111067, intron 1 of 10)	intron (NM_001111067, intron 1 of 10)	43710	NM_001105	90	Hs.470316	NM_001105	HPRD:00021	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor, type I	protein-coding
19-PTNLD28-TUMOR_peak_40993	chr17	31263889	31264532	+	13.09751	NA	intron (NM_001033504, intron 5 of 6)	intron (NM_001033504, intron 5 of 6)	9282	NM_001033504	26022	Hs.3447	NM_015544	HPRD:13171	TMEM98	-	transmembrane protein 98	protein-coding
19-PTNLD28-TUMOR_peak_45798	chr18	49838766	49838884	+	13.09751	NA	Intergenic	Intergenic	-27717	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_109139	chrX	108976436	108976783	+	13.09751	NA	promoter-TSS (NM_004458)	promoter-TSS (NM_004458)	12	NM_022977	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_5266	chr1	107467088	107467264	+	13.09751	NA	Intergenic	Intergenic	-132091	NM_018137	55170	Hs.26006	NM_018137	HPRD:10505	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_107659	chrX	16730713	16730885	+	13.09751	NA	promoter-TSS (NM_175859)	promoter-TSS (NM_175859)	2	NM_175859	56474	Hs.227049	NM_019857	HPRD:02305	CTPS2	-	CTP synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_28504	chr13	76299015	76299467	+	13.09751	NA	intron (NM_005358, intron 3 of 29)	intron (NM_005358, intron 3 of 29)	-35556	NM_015842	4008	Hs.207631	NM_005358	HPRD:05078	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
19-PTNLD28-TUMOR_peak_94095	chr7	97255321	97255460	+	13.09558	NA	Intergenic	L2b|LINE|L2	-105881	NM_003182	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_42301	chr17	49021911	49022199	+	13.09558	NA	Intergenic	CpG	-76716	NM_001243877	10140	Hs.703321	NM_005749	HPRD:09273	TOB1	APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
19-PTNLD28-TUMOR_peak_72683	chr3	182971878	182972304	+	13.09558	NA	intron (NM_032047, intron 1 of 1)	CpG	1059	NM_032047	84002	Hs.718506	NM_032047	HPRD:12511	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_70419	chr3	125370164	125370338	+	13.09558	NA	Intergenic	MIRb|SINE|MIR	-55870	NM_022776	114885	Hs.477440	NM_022776	HPRD:09481	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein-like 11	protein-coding
19-PTNLD28-TUMOR_peak_43984	chr17	79521053	79521249	+	13.09487	NA	Intergenic	Intergenic	-1722	NM_025161	80233	Hs.313905	NM_025161	HPRD:07982	C17orf70	FAAP100	chromosome 17 open reading frame 70	protein-coding
19-PTNLD28-TUMOR_peak_3509	chr1	52869398	52869727	+	13.09468	NA	promoter-TSS (NM_032864)	promoter-TSS (NM_032864)	581	NM_001190819	4998	Hs.17908	NM_004153	HPRD:03544	ORC1	HSORC1|ORC1L|PARC1	origin recognition complex, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_26354	chr12	112272431	112272662	+	13.09358	NA	Intergenic	L1PA3|LINE|L1	-7486	NM_003668	8550	Hs.333120	NM_003668	HPRD:09467	MAPKAPK5	MAPKAP-K5|MK-5|MK5|PRAK	mitogen-activated protein kinase-activated protein kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_31983	chr14	99530668	99530852	+	13.09358	NA	Intergenic	Intergenic	207290	NM_022898	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_6451	chr1	147172186	147172553	+	13.09358	NA	Intergenic	Intergenic	-29735	NM_016361	51205	Hs.562154	NM_016361		ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
19-PTNLD28-TUMOR_peak_47533	chr19	13708604	13708743	+	13.09358	NA	Intergenic	Intergenic	-91399	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_34240	chr15	70027048	70027308	+	13.09358	NA	Intergenic	Intergenic	-100395	NR_026764	414926	Hs.569502	NR_026764	ENSG00000259703	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
19-PTNLD28-TUMOR_peak_15193	chr10	101300689	101300887	+	13.09358	NA	Intergenic	CpG	8098	NM_145285	159296	Hs.243272	NM_145285	HPRD:05992	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_85038	chr6	5359758	5359949	+	13.09358	NA	intron (NM_006567, intron 1 of 6)	intron (NM_006567, intron 1 of 6)	98269	NM_006567	10667	Hs.484547	NM_006567	HPRD:09946	FARS2	COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_11652	chr10	1463068	1463363	+	13.09358	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-105610	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25143	chr12	68334509	68334701	+	13.09358	NA	intron (NR_120456, intron 2 of 2)	intron (NR_120456, intron 2 of 2)	11590	NR_120456	101927922	Hs.450769	NR_120456		LINC01479	-	long intergenic non-protein coding RNA 1479	ncRNA
19-PTNLD28-TUMOR_peak_55866	chr2	134476316	134476512	+	13.09358	NA	Intergenic	Intergenic	-150383	NM_207363	344148	Hs.537329	NM_207363	HPRD:16936	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_89395	chr6	126661115	126661329	+	13.09358	NA	non-coding (NR_104462, exon 1 of 4)	non-coding (NR_104462, exon 1 of 4)	287	NM_001286525	387103	Hs.486401	NM_001012507	HPRD:16660	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
19-PTNLD28-TUMOR_peak_103337	chr9	45814100	45814322	+	13.09358	NA	Intergenic	Intergenic	-302732	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_2499	chr1	37876477	37876739	+	13.09358	NA	Intergenic	Intergenic	63436	NR_038842	728431	Hs.380738	NR_038842	ENSG00000233621	LINC01137	-	long intergenic non-protein coding RNA 1137	ncRNA
19-PTNLD28-TUMOR_peak_90932	chr7	2599075	2599364	+	13.09243	NA	intron (NM_001287501, intron 1 of 19)	intron (NM_001287501, intron 1 of 19)	613	NM_001287499	23288	Hs.520627	NM_152558	HPRD:11050	IQCE	1700028P05Rik	IQ motif containing E	protein-coding
19-PTNLD28-TUMOR_peak_10749	chr1	229761231	229761421	+	13.09243	NA	promoter-TSS (NM_014777)	promoter-TSS (NM_014777)	468	NM_001025247	27097	Hs.270621	NM_014409	HPRD:11619	TAF5L	PAF65B	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa	protein-coding
19-PTNLD28-TUMOR_peak_51465	chr2	20690508	20690897	+	13.08883	NA	Intergenic	Intergenic	43867	NM_004040	388	Hs.502876	NM_004040	HPRD:01321	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
19-PTNLD28-TUMOR_peak_85134	chr6	7107914	7108043	+	13.08883	NA	promoter-TSS (NM_001003699)	promoter-TSS (NM_001003699)	-108	NM_001003700	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21393	chr11	116662095	116662201	+	13.08883	NA	intron (NM_052968, intron 3 of 3)	intron (NM_052968, intron 3 of 3)	988	NM_001166598	116519	Hs.283923	NM_052968	HPRD:06966	APOA5	APOAV|RAP3	apolipoprotein A-V	protein-coding
19-PTNLD28-TUMOR_peak_14557	chr10	81002547	81002713	+	13.08883	NA	intron (NM_020338, intron 7 of 24)	CpG	-104590	NM_005729	10105	Hs.381072	NM_005729	HPRD:06839	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19-PTNLD28-TUMOR_peak_12707	chr10	30290378	30290490	+	13.08883	NA	Intergenic	MIRc|SINE|MIR	58054	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_36625	chr16	19421795	19422418	+	13.08883	NA	promoter-TSS (NM_001105248)	promoter-TSS (NM_001105248)	49	NM_001105248	79838	Hs.115838	NM_024780	HPRD:15516	TMC5	-	transmembrane channel-like 5	protein-coding
19-PTNLD28-TUMOR_peak_39159	chr16	85254150	85254345	+	13.08883	NA	Intergenic	Intergenic	-62317	NR_038859	197196	Hs.679002	NM_153238		LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
19-PTNLD28-TUMOR_peak_45521	chr18	44292402	44292680	+	13.08883	NA	intron (NM_013305, intron 1 of 6)	intron (NM_013305, intron 1 of 6)	44498	NM_013305	29906	Hs.465025	NM_013305	HPRD:06199	ST8SIA5	SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_70442	chr3	125642194	125642513	+	13.08702	NA	intron (NR_024251, intron 3 of 4)	L1MD2|LINE|L1	6909	NR_024251	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62217	chr20	55434794	55434968	+	13.08702	NA	Intergenic	Intergenic	230523	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_81788	chr5	121829932	121830199	+	13.08702	NA	Intergenic	AluJr|SINE|Alu	-15283	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
19-PTNLD28-TUMOR_peak_5569	chr1	112683897	112684233	+	13.07866	NA	Intergenic	Intergenic	150875	NM_001270945	643355	Hs.279714	NM_001270945		LOC643355	-	uncharacterized LOC643355	protein-coding
19-PTNLD28-TUMOR_peak_76190	chr4	88631493	88632083	+	13.07866	NA	Intergenic	L1PA2|LINE|L1	60334	NM_001079911	1758	Hs.652366	NM_004407	HPRD:02989	DMP1	ARHP|ARHR|DMP-1	dentin matrix acidic phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_92379	chr7	46245244	46245396	+	13.07866	NA	Intergenic	Intergenic	-284449	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_3844	chr1	59492034	59492289	+	13.07866	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	6013	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
19-PTNLD28-TUMOR_peak_45183	chr18	32387407	32387661	+	13.07866	NA	intron (NM_001128175, intron 6 of 11)	intron (NM_001128175, intron 6 of 11)	-10392	NM_001198943	1837	Hs.643454	NM_001390	HPRD:03141	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_67292	chr3	28101141	28101283	+	13.07866	NA	Intergenic	L1PA3|LINE|L1	-181912	NM_182523	152100	Hs.444724	NM_182523		CMC1	C3orf68	C-x(9)-C motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_13371	chr10	47049886	47050004	+	13.07866	NA	Intergenic	L2c|LINE|L2	-33589	NM_005972	5540	Hs.524719	NM_005972	HPRD:03476	NPY4R	NPY4-R|PP1|PPYR1|Y4	neuropeptide Y receptor Y4	protein-coding
19-PTNLD28-TUMOR_peak_95296	chr7	130418410	130419012	+	13.07866	NA	exon (NM_138693, exon 1 of 1)	exon (NM_138693, exon 1 of 1)	149	NM_138693	136259	Hs.125240	NM_138693	HPRD:13919	KLF14	BTEB5	Kruppel-like factor 14	protein-coding
19-PTNLD28-TUMOR_peak_48983	chr19	39646968	39647091	+	13.07866	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	30609	NM_001014832	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_38347	chr16	67499742	67499998	+	13.07866	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	15219	NM_004691	9114	Hs.106876	NM_004691	HPRD:06121	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1	protein-coding
19-PTNLD28-TUMOR_peak_1044	chr1	16382629	16382825	+	13.07866	NA	intron (NM_000085, intron 18 of 19)	intron (NM_000085, intron 18 of 19)	7470	NM_001165945	1188	Hs.352243	NM_000085	HPRD:03607	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride channel, voltage-sensitive Kb	protein-coding
19-PTNLD28-TUMOR_peak_12501	chr10	25402202	25402799	+	13.07866	NA	non-coding (NR_120649, exon 1 of 8)	non-coding (NR_120649, exon 1 of 8)	513	NR_120649	101929025	Hs.553324	NR_120649	ENSG00000231422	LINC01516	-	long intergenic non-protein coding RNA 1516	ncRNA
19-PTNLD28-TUMOR_peak_76033	chr4	84140574	84140741	+	13.07866	NA	Intergenic	Intergenic	65410	NM_015697	27235	Hs.144304	NM_015697	HPRD:13062	COQ2	CL640|COQ10D1|MSA1	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_67888	chr3	45814527	45814776	+	13.07866	NA	intron (NM_020208, intron 4 of 10)	L4|LINE|RTE	23384	NM_022405	54716	Hs.413095	NM_020208	HPRD:16128	SLC6A20	SIT1|XT3|Xtrp3	solute carrier family 6 (proline IMINO transporter), member 20	protein-coding
19-PTNLD28-TUMOR_peak_65079	chr22	30810275	30810518	+	13.07862	NA	intron (NM_012429, intron 8 of 11)	intron (NM_012429, intron 8 of 11)	-11215	NM_016498	51537	Hs.713636	NM_016498	HPRD:17612	MTFP1	MTP18	mitochondrial fission process 1	protein-coding
19-PTNLD28-TUMOR_peak_66460	chr3	9464887	9465063	+	13.07862	NA	intron (NM_001292043, intron 1 of 24)	intron (NM_001292043, intron 1 of 24)	25591	NM_001292043	55209	Hs.288164	NM_018187	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_80694	chr5	73679121	73679323	+	13.07862	NA	Intergenic	Intergenic	60911	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
19-PTNLD28-TUMOR_peak_35700	chr16	1156385	1156536	+	13.07862	NA	Intergenic	Intergenic	-10216	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
19-PTNLD28-TUMOR_peak_70890	chr3	132760217	132760360	+	13.07862	NA	intron (NM_023943, intron 1 of 5)	intron (NM_023943, intron 1 of 5)	3156	NM_023943	66000	Hs.191616	NM_023943	HPRD:11329	TMEM108	CT124	transmembrane protein 108	protein-coding
19-PTNLD28-TUMOR_peak_2641	chr1	39679832	39680533	+	13.07862	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	130343	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_20	chr1	369495	369608	+	13.07862	NA	TTS (NM_001005277)	TTS (NM_001005277)	1892	NM_001005277	81399	Hs.632360	NM_001005277	HPRD:14969	OR4F16	OR1-1|OR7-21	olfactory receptor, family 4, subfamily F, member 16	protein-coding
19-PTNLD28-TUMOR_peak_91777	chr7	28893704	28894177	+	13.07862	NA	Intergenic	CpG	104089	NM_014817	9865	Hs.744120	NM_014817		TRIL	-	TLR4 interactor with leucine-rich repeats	protein-coding
19-PTNLD28-TUMOR_peak_15146	chr10	99648745	99648867	+	13.07862	NA	intron (NM_018058, intron 11 of 14)	intron (NM_018058, intron 11 of 14)	38811	NM_001010917	401647	Hs.567524	NM_001010917	HPRD:16579	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_84620	chr5	180796124	180796237	+	13.07862	NA	TTS (NM_001005277).3	TTS (NM_001005277).3	1892	NM_001005221	729759	Hs.632360	NM_001005221	HPRD:14971	OR4F29	OR7-21	olfactory receptor, family 4, subfamily F, member 29	protein-coding
19-PTNLD28-TUMOR_peak_55254	chr2	119640350	119640514	+	13.07789	NA	Intergenic	LTR41|LTR|ERVL	-34673	NM_001426	2019	Hs.271977	NM_001426	HPRD:08835	EN1	-	engrailed homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_18483	chr11	47586879	47587579	+	13.07423	NA	exon (NM_175732, exon 1 of 4)	exon (NM_175732, exon 1 of 4)	247	NM_175732	114971	Hs.656205	NM_175732		PTPMT1	DUSP23|MOSP|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding
19-PTNLD28-TUMOR_peak_48378	chr19	29355059	29355242	+	13.07423	NA	Intergenic	Intergenic	-100888	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
19-PTNLD28-TUMOR_peak_61887	chr20	49609699	49609871	+	13.07423	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	29890	NM_002237	3755	Hs.118695	NM_002237	HPRD:04809	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel, subfamily G, member 1	protein-coding
19-PTNLD28-TUMOR_peak_90256	chr6	158410525	158411300	+	13.07423	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	8024	NM_003898	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_106784	chr9	139753490	139753936	+	13.07423	NA	exon (NM_206920, exon 25 of 27)	exon (NM_206920, exon 25 of 27)	6894	NM_206920	158056	Hs.376780	NM_206920	HPRD:12434	MAMDC4	AEGP	MAM domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_35412	chr15	98964869	98965073	+	13.07423	NA	Intergenic	CpG	92640	NM_182562	283777	Hs.668070	NM_182562	HPRD:08265	FAM169B	-	family with sequence similarity 169, member B	protein-coding
19-PTNLD28-TUMOR_peak_74018	chr4	3785619	3785885	+	13.07423	NA	Intergenic	Intergenic	17456	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_68704	chr3	62859399	62859589	+	13.07423	NA	intron (NM_183393, intron 1 of 26)	intron (NM_183393, intron 1 of 26)	1570	NM_003716	8618	Hs.654933	NM_003716	HPRD:05236	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
19-PTNLD28-TUMOR_peak_84826	chr6	2857875	2858239	+	13.06487	NA	intron (NR_033851, intron 1 of 1)	intron (NR_033851, intron 1 of 1)	-3716	NR_039788	100616285		NR_039788	miRBase:MI0017272	MIR4645	-	microRNA 4645	ncRNA
19-PTNLD28-TUMOR_peak_86065	chr6	25973246	25973429	+	13.06487	NA	intron (NM_006355, intron 6 of 7)	intron (NM_006355, intron 6 of 7)	10420	NM_006355	10475	Hs.584851	NM_006355	HPRD:15555	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
19-PTNLD28-TUMOR_peak_82194	chr5	133387162	133387294	+	13.06487	NA	Intergenic	Intergenic	-46404	NM_003374	7416	Hs.519320	NM_003374	HPRD:05137	VDAC1	PORIN|VDAC-1	voltage-dependent anion channel 1	protein-coding
19-PTNLD28-TUMOR_peak_73769	chr4	760058	760196	+	13.05863	NA	3' UTR (NM_006315, exon 11 of 11)	3' UTR (NM_006315, exon 11 of 11)	15509	NR_036512	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	ncRNA
19-PTNLD28-TUMOR_peak_51733	chr2	27474834	27475064	+	13.05863	NA	Intergenic	Intergenic	11011	NM_003459	7781	Hs.467981	NM_003459	HPRD:11924	SLC30A3	ZNT3	solute carrier family 30 (zinc transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_34137	chr15	68131187	68131375	+	13.05863	NA	promoter-TSS (NR_120345)	promoter-TSS (NR_120345)	-64	NR_120345	101929076	Hs.297340	NR_120345	ENSG00000245719	LOC101929076	-	uncharacterized LOC101929076	ncRNA
19-PTNLD28-TUMOR_peak_104016	chr9	80647456	80647600	+	13.05561	NA	Intergenic	Intergenic	-1163	NM_002072	2776	Hs.269782	NM_002072		GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	guanine nucleotide binding protein (G protein), q polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_47299	chr19	11236857	11237005	+	13.05249	NA	intron (NM_001195799, intron 14 of 16)	intron (NM_001195799, intron 14 of 16)	12781	NR_106946	102465534		NR_106946		MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
19-PTNLD28-TUMOR_peak_108003	chrX	40503564	40503700	+	13.05249	NA	intron (NM_144970, intron 2 of 6)	L2|LINE|L2	3187	NM_144970	159013	Hs.495961	NM_144970		CXorf38	-	chromosome X open reading frame 38	protein-coding
19-PTNLD28-TUMOR_peak_68129	chr3	49499177	49499540	+	13.05249	NA	Intergenic	L2a|LINE|L2	-6778	NM_001177643	1605	Hs.76111	NM_004393	HPRD:00546	DAG1	156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9	dystroglycan 1 (dystrophin-associated glycoprotein 1)	protein-coding
19-PTNLD28-TUMOR_peak_32968	chr15	33493211	33493414	+	13.04944	NA	Intergenic	Intergenic	-6378	NM_001277313	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_75807	chr4	77870016	77870330	+	13.04944	NA	promoter-TSS (NM_018243)	promoter-TSS (NM_018243)	-722	NM_018243	55752	Hs.128199	NM_018243	HPRD:08555	SEPT11	-	septin 11	protein-coding
19-PTNLD28-TUMOR_peak_30801	chr14	65225439	65225640	+	13.04081	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	26865	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_41226	chr17	36571026	36571261	+	13.04035	NA	Intergenic	Intergenic	-13577	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000225485	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
19-PTNLD28-TUMOR_peak_46413	chr18	77402783	77402978	+	13.04035	NA	Intergenic	Intergenic	-36921	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_109561	chrX	134555526	134555783	+	13.04035	NA	promoter-TSS (NR_024359)	promoter-TSS (NR_024359)	-214	NR_024359	399668	Hs.374414	NM_203306		LINC00086	NCRNA00086	long intergenic non-protein coding RNA 86	ncRNA
19-PTNLD28-TUMOR_peak_45603	chr18	45834512	45834671	+	13.04035	NA	Intergenic	Intergenic	-170911	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_12445	chr10	24620890	24621035	+	13.04035	NA	intron (NM_001282767, intron 2 of 18)	AluSq2|SINE|Alu	56348	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_85048	chr6	5783069	5783320	+	13.04035	NA	Intergenic	Intergenic	-87689	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
19-PTNLD28-TUMOR_peak_39250	chr16	86597513	86597717	+	13.04035	NA	Intergenic	CpG	-3242	NM_005251	2303	Hs.436448	NM_005251	HPRD:03869	FOXC2	FKHL14|LD|MFH-1|MFH1	forkhead box C2 (MFH-1, mesenchyme forkhead 1)	protein-coding
19-PTNLD28-TUMOR_peak_82826	chr5	141980641	141980813	+	13.03818	NA	intron (NM_001257212, intron 2 of 3)	intron (NM_001257212, intron 2 of 3)	12999	NM_033137	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_7560	chr1	159924011	159924191	+	13.03818	NA	promoter-TSS (NM_001146173)	promoter-TSS (NM_001146173)	-57	NM_033438	89886	Hs.661712	NM_033438	HPRD:12263	SLAMF9	CD2F-10|CD2F10|CD84-H1|CD84H1|SF2001	SLAM family member 9	protein-coding
19-PTNLD28-TUMOR_peak_55527	chr2	127732725	127732894	+	13.03818	NA	Intergenic	AluSx|SINE|Alu	132094	NM_139343	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_12227	chr10	17659279	17659882	+	13.03818	NA	promoter-TSS (NM_014241)	promoter-TSS (NM_014241)	-207	NM_014241	9200	Hs.114062	NM_014241	HPRD:10175	PTPLA	CAP|HACD1	protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A	protein-coding
19-PTNLD28-TUMOR_peak_60166	chr20	22565362	22565648	+	13.03818	NA	promoter-TSS (NM_021784)	promoter-TSS (NM_021784)	-404	NM_021784	3170	Hs.155651	NM_021784	HPRD:02618	FOXA2	HNF3B|TCF3B	forkhead box A2	protein-coding
19-PTNLD28-TUMOR_peak_54761	chr2	109259752	109260182	+	13.03776	NA	intron (NM_001193484, intron 1 of 9)	L1PA7|LINE|L1	-11301	NM_001193485	3987	Hs.597715	NM_004987	HPRD:03978	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_33289	chr15	42335249	42335514	+	13.03776	NA	intron (NM_001206670, intron 1 of 19)	intron (NM_001206670, intron 1 of 19)	7520	NM_001206670	123745	Hs.668060	NM_001080490	HPRD:13510	PLA2G4E	-	phospholipase A2, group IVE	protein-coding
19-PTNLD28-TUMOR_peak_2645	chr1	39724399	39724549	+	13.03776	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-150702	NM_015038	643314	Hs.658760	NM_015038	ENSG00000255103	KIAA0754	-	KIAA0754	protein-coding
19-PTNLD28-TUMOR_peak_537	chr1	8620827	8620967	+	13.03776	NA	intron (NM_012102, intron 5 of 23)	intron (NM_012102, intron 5 of 23)	-137150	NM_001042682	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_72007	chr3	158436410	158436589	+	13.03776	NA	intron (NM_206963, intron 1 of 5)	L1M5|LINE|L1	13776	NM_002888	5918	Hs.131269	NM_002888	HPRD:05477	RARRES1	LXNL|TIG1	retinoic acid receptor responder (tazarotene induced) 1	protein-coding
19-PTNLD28-TUMOR_peak_100254	chr8	118743813	118744136	+	13.03776	NA	Intergenic	Intergenic	211022	NM_080651	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_95658	chr7	137531217	137531566	+	13.03776	NA	exon (NM_004717, exon 1 of 34)	exon (NM_004717, exon 1 of 34)	218	NM_004717	9162	Hs.242947	NM_004717	HPRD:07238	DGKI	DGK-IOTA	diacylglycerol kinase, iota	protein-coding
19-PTNLD28-TUMOR_peak_13953	chr10	69366457	69366730	+	13.03776	NA	intron (NM_001291133, intron 4 of 8)	intron (NM_001291133, intron 4 of 8)	58850	NM_001127384	29119	Hs.21375	NM_013266	HPRD:09639	CTNNA3	ARVD13|VR22	catenin (cadherin-associated protein), alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_17197	chr11	12020003	12020176	+	13.03776	NA	intron (NM_001018057, intron 3 of 6)	intron (NM_001018057, intron 3 of 6)	10097	NM_001018057	27122	Hs.292156	NM_013253	HPRD:05659	DKK3	REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_48379	chr19	29370233	29370332	+	13.03776	NA	Intergenic	Intergenic	-85756	NR_027318	148145	Hs.112651	NR_027318	ENSG00000267339	LINC00906	-	long intergenic non-protein coding RNA 906	ncRNA
19-PTNLD28-TUMOR_peak_5597	chr1	113211351	113211535	+	13.03776	NA	intron (NM_006135, intron 8 of 9)	Charlie1b|DNA|hAT-Charlie	-5491	NM_001286072	4343	Hs.514941	NM_020963	HPRD:14732	MOV10	fSAP113|gb110	Mov10 RISC complex RNA helicase	protein-coding
19-PTNLD28-TUMOR_peak_46835	chr19	5031721	5031846	+	13.03776	NA	intron (NM_015015, intron 2 of 22)	intron (NM_015015, intron 2 of 22)	62659	NM_015015	23030	Hs.654816	NM_015015	HPRD:11056	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
19-PTNLD28-TUMOR_peak_33113	chr15	39420550	39420769	+	13.03776	NA	Intergenic	Intergenic	-122226	NM_207445	400360	Hs.376109	NM_207445	HPRD:13437	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_82338	chr5	135329687	135329856	+	13.03776	NA	Intergenic	Intergenic	-34813	NM_000358	7045	Hs.369397	NM_000358	HPRD:03409	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor, beta-induced, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_30364	chr14	54312620	54312806	+	13.03488	NA	Intergenic	Intergenic	102489	NR_049843	100847076		NR_049843	miRBase:MI0019135	MIR5580	-	microRNA 5580	ncRNA
19-PTNLD28-TUMOR_peak_65111	chr22	31364370	31364802	+	13.03016	NA	promoter-TSS (NM_014941)	promoter-TSS (NM_014941)	-399	NM_014941	22880	Hs.555918	NM_014941	HPRD:11699	MORC2	ZCW3|ZCWCC1	MORC family CW-type zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_90407	chr6	161796607	161796888	+	13.03016	NA	intron (NM_004562, intron 10 of 11)	intron (NM_004562, intron 10 of 11)	-101640	NM_020133	56895	Hs.353175	NM_020133	HPRD:12437	AGPAT4	1-AGPAT4|LPAAT-delta|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_97613	chr8	22538728	22538907	+	13.03016	NA	Intergenic	Intergenic	11085	NM_001199880	1960	Hs.534313	NM_004430	HPRD:03881	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
19-PTNLD28-TUMOR_peak_28920	chr13	104668464	104669100	+	13.03016	NA	Intergenic	Intergenic	-733934	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_76196	chr4	88883237	88883363	+	13.02569	NA	Intergenic	AluJr|SINE|Alu	-13502	NM_001040060	6696	Hs.313	NM_000582	HPRD:01325	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_23081	chr12	12223915	12224169	+	13.02569	NA	promoter-TSS (NM_030766)	promoter-TSS (NM_030766)	164	NM_138723	79370	Hs.210343	NM_030766	HPRD:05841	BCL2L14	BCLG	BCL2-like 14 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_59321	chr2	242620361	242620632	+	13.02569	NA	intron (NM_001165031, intron 2 of 4)	intron (NM_001165031, intron 2 of 4)	5887	NM_012145	1841	Hs.471873	NM_012145	HPRD:01773	DTYMK	CDC8|PP3731|TMPK|TYMK	deoxythymidylate kinase (thymidylate kinase)	protein-coding
19-PTNLD28-TUMOR_peak_47385	chr19	12084283	12084460	+	13.02569	NA	intron (NM_001012753, intron 1 of 3)	L1MC2|LINE|L1	8502	NM_001012753	284390	Hs.646386	NM_001012753	HPRD:18509	ZNF763	ZNF|ZNF440L	zinc finger protein 763	protein-coding
19-PTNLD28-TUMOR_peak_11651	chr10	1454795	1454942	+	13.02569	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-113957	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46288	chr18	73409195	73409599	+	13.02569	NA	Intergenic	Intergenic	-269808	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
19-PTNLD28-TUMOR_peak_104301	chr9	89144569	89144692	+	13.02569	NA	Intergenic	Intergenic	-175228	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_69409	chr3	99393065	99393528	+	13.02569	NA	intron (NM_020351, intron 1 of 3)	intron (NM_020351, intron 1 of 3)	35856	NM_001850	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_17787	chr11	30078536	30078781	+	13.02569	NA	Intergenic	L1PA3|LINE|L1	-40081	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_43603	chr17	74850098	74850255	+	13.02569	NA	Intergenic	L1MB3|LINE|L1	-14622	NM_001199172	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_106546	chr9	135819923	135820261	+	13.02569	NA	promoter-TSS (NM_001162426)	promoter-TSS (NM_001162426)	-72	NM_001162426	7248	Hs.370854	NM_000368	HPRD:05594	TSC1	LAM|TSC	tuberous sclerosis 1	protein-coding
19-PTNLD28-TUMOR_peak_684	chr1	10512293	10512483	+	13.02569	NA	TTS (NM_198544)	TTS (NM_198544)	2612	NM_001302	1325	Hs.412311	NM_001302	HPRD:04150	CORT	CST-14|CST-17|CST-29	cortistatin	protein-coding
19-PTNLD28-TUMOR_peak_48839	chr19	38307911	38308533	+	13.02569	NA	non-coding (NR_040013, exon 1 of 5)	non-coding (NR_040013, exon 1 of 5)	171	NR_040013	644554	Hs.683930	NR_040013	ENSG00000267640	LOC644554	-	uncharacterized LOC644554	ncRNA
19-PTNLD28-TUMOR_peak_70857	chr3	131930848	131930993	+	13.02569	NA	Intergenic	Intergenic	-105291	NM_001099	55	Hs.433060	NM_001099	HPRD:01378	ACPP	5'-NT|ACP-3|ACP3	acid phosphatase, prostate	protein-coding
19-PTNLD28-TUMOR_peak_89819	chr6	145388598	145388941	+	13.02569	NA	Intergenic	Intergenic	-667236	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
19-PTNLD28-TUMOR_peak_41332	chr17	38115325	38115471	+	13.02569	NA	Intergenic	Intergenic	-3828	NM_178171	284110	Hs.448873	NM_178171	HPRD:17081	GSDMA	GSDM|GSDM1	gasdermin A	protein-coding
19-PTNLD28-TUMOR_peak_12771	chr10	31236760	31236867	+	13.02569	NA	intron (NM_001143767, intron 1 of 5)	L1P1|LINE|L1	51633	NM_001143769	220929	Hs.660642	NM_182755	HPRD:11247	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
19-PTNLD28-TUMOR_peak_1400	chr1	22668559	22668860	+	13.02569	NA	Intergenic	CpG	-109635	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_61153	chr20	41008155	41008327	+	13.02569	NA	intron (NM_133170, intron 9 of 31)	intron (NM_133170, intron 9 of 31)	-305882	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_23373	chr12	22289919	22290043	+	13.02569	NA	Intergenic	L1PA3|LINE|L1	90871	NM_018686	55907	Hs.311346	NM_018686	HPRD:04501	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
19-PTNLD28-TUMOR_peak_52293	chr2	40241510	40241646	+	13.02569	NA	intron (NR_038441, intron 2 of 4)	L1PA2|LINE|L1	96804	NR_038441	100128590	Hs.744988	NR_038441	ENSG00000227028	SLC8A1-AS1	-	SLC8A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11502	chr1	246887553	246887944	+	13.02569	NA	exon (NM_016002, exon 1 of 12)	exon (NM_016002, exon 1 of 12)	370	NM_016002	51097	Hs.498397	NM_016002	HPRD:13038	SCCPDH	NET11	saccharopine dehydrogenase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_100080	chr8	110054384	110054651	+	13.02569	NA	Intergenic	L4|LINE|RTE	-45136	NM_003301	7201	Hs.3022	NM_003301	HPRD:11767	TRHR	TRH-R	thyrotropin-releasing hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_73259	chr3	192163661	192163837	+	13.02569	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	-36911	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_45418	chr18	42305630	42305798	+	13.02569	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	44851	NM_015559	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_14940	chr10	94822450	94822675	+	13.02569	NA	exon (NM_183374, exon 3 of 6)	exon (NM_183374, exon 3 of 6)	1541	NM_183374	340665	Hs.369993	NM_183374	HPRD:12230	CYP26C1	FFDD4	cytochrome P450, family 26, subfamily C, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_50288	chr19	54770042	54770172	+	13.02569	NA	Intergenic	Intergenic	-8940	NM_006840	10990	Hs.655338	NM_006840	HPRD:11993	LILRB5	CD85C|LIR-8|LIR8	leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5	protein-coding
19-PTNLD28-TUMOR_peak_79472	chr5	35574038	35574290	+	13.02569	NA	Intergenic	L1PA3|LINE|L1	-43825	NM_144722	79925	Hs.298863	NM_024867	HPRD:11181	SPEF2	CT122|KPL2	sperm flagellar 2	protein-coding
19-PTNLD28-TUMOR_peak_58903	chr2	233891250	233891449	+	13.02569	NA	Intergenic	L1MB7|LINE|L1	-6033	NM_005383	4759	Hs.532681	NM_005383	HPRD:05702	NEU2	SIAL2	sialidase 2 (cytosolic sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_94597	chr7	103181506	103181735	+	13.02569	NA	intron (NM_005045, intron 43 of 64)	intron (NM_005045, intron 43 of 64)	-94996	NM_206885	375611	Hs.585146	NM_198999	HPRD:09224	SLC26A5	DFNB61|PRES	solute carrier family 26 (anion exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_46073	chr18	60092787	60093197	+	13.02540	NA	Intergenic	Intergenic	-97666	NM_017742	54877	Hs.114191	NM_017742	HPRD:11696	ZCCHC2	C18orf49	zinc finger, CCHC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_93608	chr7	78911519	78911648	+	13.02540	NA	intron (NM_001301128, intron 1 of 20)	intron (NM_001301128, intron 1 of 20)	-170690	NR_038346	100505881	Hs.31474	NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_57870	chr2	203114314	203114527	+	13.02540	NA	Intergenic	MLT1A-int|LTR|ERVL-MaLR	-11098	NM_003352	7341	Hs.81424	NM_003352	HPRD:03554	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin-like modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_94457	chr7	101426302	101426448	+	13.02540	NA	Intergenic	Intergenic	-32809	NM_001913	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_45700	chr18	47538578	47538701	+	13.02540	NA	intron (NM_001080467, intron 4 of 39)	intron (NM_001080467, intron 4 of 39)	114294	NR_036204	100422865		NR_036204		MIR4320	-	microRNA 4320	ncRNA
19-PTNLD28-TUMOR_peak_53765	chr2	85414258	85414469	+	13.02540	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	53780	NM_031283	83439	Hs.516297	NM_031283	HPRD:06874	TCF7L1	TCF-3|TCF3	transcription factor 7-like 1 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_51437	chr2	20298033	20298250	+	13.02540	NA	Intergenic	Intergenic	-46352	NM_014713	9741	Hs.467807	NM_014713	HPRD:13959	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
19-PTNLD28-TUMOR_peak_46410	chr18	77370569	77370752	+	13.02402	NA	Intergenic	Intergenic	-69141	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_24639	chr12	56321460	56321851	+	13.02182	NA	promoter-TSS (NM_001143853)	promoter-TSS (NM_001143853)	42	NM_032345	84305	Hs.505687	NM_032345	HPRD:17940	WIBG	PYM	within bgcn homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_57401	chr2	189156769	189157181	+	13.02182	NA	promoter-TSS (NR_045563)	promoter-TSS (NR_045563)	-415	NR_045563	51454	Hs.470887	NM_016315		GULP1	CED-6|CED6|GULP	GULP, engulfment adaptor PTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_18854	chr11	61103585	61103924	+	13.02182	NA	intron (NM_015533, intron 2 of 17)	intron (NM_015533, intron 2 of 17)	-3070	NM_001923	1642	Hs.290758	NM_001923	HPRD:10952	DDB1	DDBA|UV-DDB1|XAP1|XPCE|XPE|XPE-BF	damage-specific DNA binding protein 1, 127kDa	protein-coding
19-PTNLD28-TUMOR_peak_71011	chr3	134385862	134386062	+	13.01868	NA	Intergenic	Intergenic	-16098	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_106792	chr9	139838654	139839242	+	13.01868	NA	promoter-TSS (NM_000606)	promoter-TSS (NM_000606)	258	NM_018998	54461	Hs.522507	NM_018998	HPRD:10955	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_62216	chr20	55434353	55434687	+	13.01868	NA	Intergenic	Intergenic	230162	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_79	chr1	903399	903704	+	13.00736	NA	intron (NM_032129, intron 2 of 15)	intron (NM_032129, intron 2 of 15)	1674	NM_032129	84069	Hs.528691	NM_032129	HPRD:13190	PLEKHN1	-	pleckstrin homology domain containing, family N member 1	protein-coding
19-PTNLD28-TUMOR_peak_35760	chr16	2043907	2044056	+	13.00519	NA	3' UTR (NM_004209, exon 4 of 4)	3' UTR (NM_004209, exon 4 of 4)	4035	NM_004209	9143	Hs.435277	NM_004209	HPRD:06801	SYNGR3	-	synaptogyrin 3	protein-coding
19-PTNLD28-TUMOR_peak_8163	chr1	171454157	171454342	+	13.00340	NA	promoter-TSS (NM_015172)	promoter-TSS (NM_015172)	-417	NM_015172	23215	Hs.494614	NM_015172	HPRD:16539	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
19-PTNLD28-TUMOR_peak_97909	chr8	28258663	28258834	+	12.99337	NA	Intergenic	Intergenic	-14771	NM_018660	55893	Hs.435535	NM_018660	HPRD:11711	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
19-PTNLD28-TUMOR_peak_46467	chr19	189861	189975	+	12.99337	NA	Intergenic	AluSz|SINE|Alu	12291	NR_028324	399844	Hs.356758	NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
19-PTNLD28-TUMOR_peak_73715	chr3	197956440	197956563	+	12.99337	NA	Intergenic	AluSz|SINE|Alu	77264	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_83984	chr5	172127420	172127696	+	12.99337	NA	Intergenic	Intergenic	-54948	NM_001287812	101928093	Hs.646902	NM_001287812		LOC101928093	-	uncharacterized LOC101928093	protein-coding
19-PTNLD28-TUMOR_peak_20131	chr11	75947349	75947534	+	12.99337	NA	Intergenic	CpG	-29867	NM_004626	7481	Hs.108219	NM_004626	HPRD:04741	WNT11	HWNT11	wingless-type MMTV integration site family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_55167	chr2	115448330	115448712	+	12.99266	NA	intron (NM_001178036, intron 2 of 26)	L1PA11|LINE|L1	229341	NM_001178036	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_7776	chr1	162727367	162727676	+	12.99266	NA	intron (NM_001014796, intron 8 of 18)	L2b|LINE|L2	-32975	NM_016371	51478	Hs.492925	NM_016371	HPRD:05996	HSD17B7	PRAP|SDR37C1	hydroxysteroid (17-beta) dehydrogenase 7	protein-coding
19-PTNLD28-TUMOR_peak_86849	chr6	33489643	33489847	+	12.99266	NA	Intergenic	LTR12C|LTR|ERV1	58325	NM_001188	578	Hs.485139	NM_001188	HPRD:02744	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
19-PTNLD28-TUMOR_peak_41138	chr17	34838954	34839120	+	12.99266	NA	Intergenic	CpG	-3434	NR_104010	9326	Hs.2210	NM_004773	HPRD:05139	ZNHIT3	TRIP3	zinc finger, HIT-type containing 3	protein-coding
19-PTNLD28-TUMOR_peak_98412	chr8	41575422	41575565	+	12.99266	NA	intron (NM_020476, intron 11 of 41)	intron (NM_020476, intron 11 of 41)	-52689	NM_020480	286	Hs.654438	NM_000037	HPRD:01693	ANK1	ANK|SPH1|SPH2	ankyrin 1, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_106720	chr9	139001290	139001768	+	12.99266	NA	Intergenic	Intergenic	8748	NM_001256526	90120	Hs.287411	NM_152833	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
19-PTNLD28-TUMOR_peak_7488	chr1	158856357	158856528	+	12.99266	NA	Intergenic	L1PA2|LINE|L1	-44895	NM_152501	149628	Hs.710248	NM_152501	HPRD:09999	PYHIN1	IFIX	pyrin and HIN domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_53460	chr2	73086956	73087152	+	12.99266	NA	Intergenic	Intergenic	-27458	NM_003124	6697	Hs.301540	NM_003124	HPRD:01632	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
19-PTNLD28-TUMOR_peak_4277	chr1	68759384	68759876	+	12.99266	NA	Intergenic	Intergenic	-61346	NM_024911	79971	Hs.647659	NM_024911	HPRD:10980	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
19-PTNLD28-TUMOR_peak_61538	chr20	46402255	46402506	+	12.99266	NA	intron (NM_198596, intron 1 of 20)	intron (NM_198596, intron 1 of 20)	12428	NM_018837	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_65753	chr22	42956507	42956745	+	12.99203	NA	intron (NR_104300, intron 8 of 10)	intron (NR_104300, intron 8 of 10)	6758	NM_014509	253190	Hs.728878	NM_014509	HPRD:15908	SERHL2	dJ222E13.1	serine hydrolase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_9167	chr1	200988654	200988836	+	12.99203	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	4083	NM_001252103	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19-PTNLD28-TUMOR_peak_50358	chr19	55813110	55813612	+	12.98668	NA	intron (NM_032430, intron 8 of 18)	intron (NM_032430, intron 8 of 18)	17827	NM_032430	84446	Hs.182081	NM_032430	HPRD:12533	BRSK1	hSAD1	BR serine/threonine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_70468	chr3	125931795	125932246	+	12.98668	NA	Intergenic	CpG	-31991	NM_001270364	10840	Hs.434435	NM_012190	HPRD:02594	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family, member L1	protein-coding
19-PTNLD28-TUMOR_peak_8778	chr1	183645736	183645936	+	12.98668	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-23388	NM_203454	403314	Hs.97335	NM_203454	HPRD:17522	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_18933	chr11	61746207	61746411	+	12.98668	NA	Intergenic	Intergenic	-11177	NM_002032	2495	Hs.524910	NM_002032	HPRD:00615	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin, heavy polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_71434	chr3	143079090	143079328	+	12.98668	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	18121	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19150	chr11	64146045	64146215	+	12.98668	NA	Intergenic	Intergenic	10056	NR_031602	100302280		NR_031602		MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
19-PTNLD28-TUMOR_peak_72381	chr3	172312477	172312621	+	12.98668	NA	Intergenic	Intergenic	-71252	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_61454	chr20	45338159	45338721	+	12.98668	NA	intron (NM_030777, intron 1 of 4)	CpG	161	NM_030777	81031	Hs.305971	NM_030777	HPRD:05851	SLC2A10	ATS|GLUT10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_70296	chr3	124082371	124082613	+	12.98668	NA	intron (NM_001024660, intron 10 of 59)	intron (NM_001024660, intron 10 of 59)	-10687	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_2273	chr1	34844679	34844844	+	12.98668	NA	Intergenic	Intergenic	202208	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_98240	chr8	38129884	38130058	+	12.98653	NA	Intergenic	Intergenic	-3233	NM_001102560	84513	Hs.567619	NM_032483	HPRD:13720	PPAPDC1B	DPPL1|HTPAP	phosphatidic acid phosphatase type 2 domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_82950	chr5	145316084	145316734	+	12.98515	NA	intron (NM_152550, intron 1 of 9)	intron (NM_152550, intron 1 of 9)	283	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_108252	chrX	48754463	48754767	+	12.98515	NA	promoter-TSS (NM_001167989)	promoter-TSS (NM_001167989)	-580	NM_001032382	10084	Hs.534384	NM_005710	HPRD:02354	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61997	chr20	51588789	51588923	+	12.98515	NA	promoter-TSS (NM_173485)	promoter-TSS (NM_173485)	-90	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_56910	chr2	171572100	171572531	+	12.98515	NA	intron (NM_001003845, intron 1 of 1)	CpG	458	NM_001003845	389058	Hs.368802	NM_001003845	HPRD:18088	SP5	-	Sp5 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_36953	chr16	25269513	25269677	+	12.98515	NA	promoter-TSS (NM_001012981)	promoter-TSS (NM_001012981)	-740	NM_001012981	342357	Hs.513451	NM_001012981	HPRD:11268	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
19-PTNLD28-TUMOR_peak_31	chr1	522807	522954	+	12.98445	NA	Intergenic	MER4D1|LTR|ERV1	44913	NR_106781	102465432		NR_106781		MIR6723	hsa-mir-6723	microRNA 6723	ncRNA
19-PTNLD28-TUMOR_peak_108259	chrX	48815324	48815475	+	12.98445	NA	promoter-TSS (NM_001136158)	promoter-TSS (NM_001136158)	249	NM_001136159	55593	Hs.496098	NM_017602	HPRD:06488	OTUD5	DUBA	OTU deubiquitinase 5	protein-coding
19-PTNLD28-TUMOR_peak_44339	chr18	3580210	3580772	+	12.98445	NA	intron (NM_001242764, intron 5 of 9)	intron (NM_001242764, intron 5 of 9)	-13621	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43098	chr17	66032291	66032462	+	12.98445	NA	intron (NM_002266, intron 1 of 10)	intron (NM_002266, intron 1 of 10)	528	NM_002266	3838	Hs.594238	NM_002266	HPRD:02818	KPNA2	IPOA1|QIP2|RCH1|SRP1alpha	karyopherin alpha 2 (RAG cohort 1, importin alpha 1)	protein-coding
19-PTNLD28-TUMOR_peak_34378	chr15	72519106	72519293	+	12.97974	NA	intron (NM_001206798, intron 1 of 10)	intron (NM_001206798, intron 1 of 10)	2864	NM_001206799	5315	Hs.534770	NM_002654	HPRD:01529	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1	pyruvate kinase, muscle	protein-coding
19-PTNLD28-TUMOR_peak_42632	chr17	57407060	57407208	+	12.97974	NA	Intergenic	Intergenic	-1919	NM_001005404	388403	Hs.463613	NM_001005404	HPRD:15682	YPEL2	-	yippee-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_61504	chr20	45981249	45981432	+	12.97974	NA	intron (NM_001281772, intron 2 of 23)	intron (NM_001281772, intron 2 of 23)	4293	NM_001281781	23613	Hs.446240	NM_012408	HPRD:10166	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger, MYND-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_34580	chr15	75825357	75825479	+	12.97849	NA	intron (NM_002833, intron 1 of 12)	intron (NM_002833, intron 1 of 12)	46214	NM_002833	5780	Hs.445775	NM_002833	HPRD:02864	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding
19-PTNLD28-TUMOR_peak_65199	chr22	32935803	32936052	+	12.97849	NA	intron (NM_001135774, intron 8 of 13)	intron (NM_001135774, intron 8 of 13)	64703	NM_001033024	25793	Hs.5912	NM_012179	HPRD:07292	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
19-PTNLD28-TUMOR_peak_38174	chr16	63014896	63014997	+	12.97849	NA	Intergenic	HERVH-int|LTR|ERV1	-944207	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_4421	chr1	77371990	77372133	+	12.97849	NA	intron (NM_030965, intron 2 of 4)	intron (NM_030965, intron 2 of 4)	38875	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_12425	chr10	24386814	24387349	+	12.97849	NA	intron (NM_001098500, intron 2 of 18)	intron (NM_001098500, intron 2 of 18)	-110639	NM_001282767	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_17808	chr11	31342944	31343087	+	12.97849	NA	intron (NM_181807, intron 3 of 8)	L1HS|LINE|L1	48342	NM_181807	341019	Hs.127405	NM_181807	HPRD:12158	DCDC1	-	doublecortin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38962	chr16	81327921	81328069	+	12.97849	NA	Intergenic	Intergenic	-20576	NM_022041	8139	Hs.112569	NM_022041		GAN	GAN1|KLHL16	gigaxonin	protein-coding
19-PTNLD28-TUMOR_peak_17374	chr11	14665248	14665440	+	12.97849	NA	promoter-TSS (NM_148976)	promoter-TSS (NM_148976)	75	NM_000922	5140	Hs.445711	NM_000922	HPRD:03626	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B, cGMP-inhibited	protein-coding
19-PTNLD28-TUMOR_peak_8298	chr1	174352347	174352450	+	12.97849	NA	intron (NM_014857, intron 12 of 20)	L1PA2|LINE|L1	-64814	NM_005684	9293	Hs.673850	NM_005684	HPRD:07247	GPR52	-	G protein-coupled receptor 52	protein-coding
19-PTNLD28-TUMOR_peak_84114	chr5	173446875	173447387	+	12.97849	NA	Intergenic	L1PA2|LINE|L1	-25476	NM_015980	51617	Hs.559412	NM_015980	HPRD:13664	HMP19	-	HMP19 protein	protein-coding
19-PTNLD28-TUMOR_peak_80607	chr5	72431917	72432423	+	12.97849	NA	Intergenic	Intergenic	15782	NM_173490	134285	Hs.162246	NM_173490	HPRD:14057	TMEM171	PRP2	transmembrane protein 171	protein-coding
19-PTNLD28-TUMOR_peak_98871	chr8	56919149	56919356	+	12.97849	NA	intron (NM_001111097, intron 12 of 12)	L2b|LINE|L2	67208	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
19-PTNLD28-TUMOR_peak_18969	chr11	62192319	62192450	+	12.97562	NA	Intergenic	Intergenic	5877	NM_003357	7356	Hs.523732	NM_003357	HPRD:01884	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
19-PTNLD28-TUMOR_peak_6587	chr1	149294494	149294713	+	12.97562	NA	Intergenic	Intergenic	7152	NR_111934	644634	Hs.723057	NR_111934		FAM231D	-	family with sequence similarity 231, member D	ncRNA
19-PTNLD28-TUMOR_peak_31055	chr14	70082417	70082669	+	12.97562	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	4233	NM_014734	9766	Hs.440025	NM_014734	HPRD:10010	KIAA0247	-	KIAA0247	protein-coding
19-PTNLD28-TUMOR_peak_36476	chr16	15248128	15248264	+	12.97496	NA	TTS (NR_037466)	TTS (NR_037466)	663	NR_037466	100500852		NR_037466	miRBase:MI0016408	MIR3180-4	-	microRNA 3180-4	ncRNA
19-PTNLD28-TUMOR_peak_96757	chr7	158442145	158442325	+	12.97246	NA	intron (NM_001281933, intron 24 of 27)	X7A_LINE|LINE|CR1	55287	NR_104054	54892	Hs.18616	NM_017760	HPRD:10539	NCAPG2	CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding
19-PTNLD28-TUMOR_peak_76931	chr4	124400047	124400491	+	12.97246	NA	Intergenic	Intergenic	79624	NM_005841	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_436	chr1	7439572	7440023	+	12.97246	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-391532	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_106445	chr9	133454225	133454570	+	12.97246	NA	promoter-TSS (NM_003934)	promoter-TSS (NM_003934)	484	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	ncRNA
19-PTNLD28-TUMOR_peak_10904	chr1	233124364	233124528	+	12.97246	NA	intron (NM_014801, intron 32 of 33)	intron (NM_014801, intron 32 of 33)	38076	NM_032324	84284	Hs.642715	NM_032324		NTPCR	C1orf57|HCR-NTPase	nucleoside-triphosphatase, cancer-related	protein-coding
19-PTNLD28-TUMOR_peak_91887	chr7	31537290	31537442	+	12.97246	NA	Intergenic	MER39|LTR|ERV1	-16319	NM_001257967	223075	Hs.224269	NM_194300	HPRD:14137	CCDC129	-	coiled-coil domain containing 129	protein-coding
19-PTNLD28-TUMOR_peak_61686	chr20	48150907	48151071	+	12.97246	NA	intron (NM_000961, intron 5 of 9)	intron (NM_000961, intron 5 of 9)	33718	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_82536	chr5	139012986	139013098	+	12.96569	NA	Intergenic	Intergenic	-15259	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_9092	chr1	199241406	199241578	+	12.96028	NA	Intergenic	Intergenic	-253399	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
19-PTNLD28-TUMOR_peak_1537	chr1	24529726	24530134	+	12.96028	NA	intron (NR_027087, intron 2 of 2)	intron (NR_027087, intron 2 of 2)	3200	NR_027087	284632	Hs.638906	NR_027087	ENSG00000230023	LOC284632	-	uncharacterized LOC284632	ncRNA
19-PTNLD28-TUMOR_peak_50165	chr19	53400117	53400290	+	12.96028	NA	Intergenic	MER51C|LTR|ERV1	-5604	NM_207333	162967	Hs.369632	NM_207333	HPRD:18506	ZNF320	ZFPL	zinc finger protein 320	protein-coding
19-PTNLD28-TUMOR_peak_64116	chr21	47609596	47609788	+	12.96018	NA	3' UTR (NM_001145437, exon 21 of 21)	3' UTR (NM_001145437, exon 21 of 21)	-5319	NM_032261	84221	Hs.381214	NM_032261	HPRD:10753	SPATC1L	C21orf56	spermatogenesis and centriole associated 1-like	protein-coding
19-PTNLD28-TUMOR_peak_106387	chr9	132514364	132514592	+	12.95872	NA	intron (NM_004878, intron 1 of 2)	intron (NM_004878, intron 1 of 2)	866	NM_004878	9536	Hs.146688	NM_004878	HPRD:05528	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
19-PTNLD28-TUMOR_peak_99913	chr8	104137169	104137387	+	12.95872	NA	Intergenic	Intergenic	-15643	NM_024812	79870	Hs.533446	NM_024812	HPRD:09422	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_3274	chr1	47413277	47413453	+	12.95872	NA	Intergenic	HERV17-int|LTR|ERV1	-6209	NM_000778	1579	Hs.1645	NM_000778	HPRD:03201	CYP4A11	CP4Y|CYP4A2|CYP4AII	cytochrome P450, family 4, subfamily A, polypeptide 11	protein-coding
19-PTNLD28-TUMOR_peak_59211	chr2	240691223	240691414	+	12.95872	NA	intron (NR_037808, intron 1 of 2)	intron (NR_037808, intron 1 of 2)	6764	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_105755	chr9	121724853	121725062	+	12.95872	NA	Intergenic	Intergenic	406782	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_2668	chr1	40075403	40075506	+	12.95872	NA	Intergenic	L2a|LINE|L2	29894	NM_014571	26508	Hs.472566	NM_014571	HPRD:16419	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes-related family bHLH transcription factor with YRPW motif-like	protein-coding
19-PTNLD28-TUMOR_peak_89599	chr6	137114170	137114398	+	12.95872	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	-628	NM_005923	4217	Hs.186486	NM_005923	HPRD:03904	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_67866	chr3	45528551	45528735	+	12.95871	NA	intron (NM_015340, intron 11 of 21)	intron (NM_015340, intron 11 of 21)	22394	NR_048543	100885795	Hs.641094	NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29813	chr14	34162106	34162322	+	12.95871	NA	intron (NM_001165893, intron 5 of 10)	intron (NM_001165893, intron 5 of 10)	258070	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_13703	chr10	57659724	57660016	+	12.95871	NA	Intergenic	L1PA3|LINE|L1	301120	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
19-PTNLD28-TUMOR_peak_14554	chr10	80949676	80949820	+	12.95871	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	120956	NM_020338	57178	Hs.193118	NM_020338	HPRD:12115	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger, MIZ-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_21316	chr11	114763238	114763527	+	12.95871	NA	Intergenic	Intergenic	214182	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_7433	chr1	157918470	157918586	+	12.95871	NA	Intergenic	Intergenic	-44535	NM_001286349	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_74500	chr4	10412461	10412599	+	12.95871	NA	Intergenic	Intergenic	46502	NM_053042	85460	Hs.455089	NM_053042	HPRD:13889	ZNF518B	-	zinc finger protein 518B	protein-coding
19-PTNLD28-TUMOR_peak_99260	chr8	76319648	76319840	+	12.95871	NA	Intergenic	CpG	-82768	NR_103849	101805492	Hs.571424	NR_103848		CASC9	LINC00981	cancer susceptibility candidate 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_31294	chr14	75138621	75138758	+	12.95871	NA	intron (NM_001039479, intron 11 of 19)	intron (NM_001039479, intron 11 of 19)	41118	NM_001039479	9870	Hs.497417	NM_014821	HPRD:13794	AREL1	KIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_45236	chr18	33882679	33882848	+	12.95871	NA	intron (NM_001281739, intron 1 of 23)	intron (NM_001281739, intron 1 of 23)	5104	NM_001281739	80206	Hs.630884	NM_025135	HPRD:16894	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_11259	chr1	240161252	240161538	+	12.95871	NA	Intergenic	CpG	-9429	NR_036695	645884	Hs.613280	NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_71718	chr3	150562357	150562538	+	12.95871	NA	Intergenic	Intergenic	-81184	NM_005067	6478	Hs.477959	NM_005067	HPRD:03737	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_52195	chr2	38323442	38323661	+	12.95871	NA	Intergenic	Intergenic	-20228	NM_000104	1545	Hs.154654	NM_000104	HPRD:03464	CYP1B1	CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450, family 1, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_12892	chr10	34694893	34695033	+	12.95871	NA	intron (NM_001184791, intron 4 of 20)	intron (NM_001184791, intron 4 of 20)	409290	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_40906	chr17	28977964	28978093	+	12.95871	NA	Intergenic	Intergenic	26692	NR_033420	6459	Hs.684860	NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3-domain GRB2-like 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_16210	chr10	128192795	128193214	+	12.95871	NA	exon (NM_001004298, exon 3 of 9)	exon (NM_001004298, exon 3 of 9)	17006	NM_001004298	118611	Hs.587663	NM_001004298	HPRD:16587	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
19-PTNLD28-TUMOR_peak_81485	chr5	108791488	108791772	+	12.95871	NA	Intergenic	Intergenic	-45955	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_18052	chr11	35257589	35257822	+	12.95871	NA	Intergenic	L2c|LINE|L2	97288	NM_001202556	960	Hs.502328	NM_000610	HPRD:00115	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
19-PTNLD28-TUMOR_peak_62347	chr20	56812253	56812366	+	12.95871	NA	intron (NR_003505, intron 14 of 16)	intron (NR_003505, intron 14 of 16)	72186	NR_003505	55370	Hs.473179	NM_018498	HPRD:17895	PPP4R1L	C20orf192|PRO1085	protein phosphatase 4, regulatory subunit 1-like	pseudo
19-PTNLD28-TUMOR_peak_41887	chr17	44471187	44471377	+	12.95871	NA	intron (NR_033799, intron 1 of 6)	L1MB7|LINE|L1	21103	NR_033799	728806	Hs.735097	NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_57058	chr2	175274575	175274862	+	12.95871	NA	intron (NM_024583, intron 5 of 7)	L1PA2|LINE|L1	14261	NM_024583	79634	Hs.470679	NM_024583	HPRD:18028	SCRN3	SES3	secernin 3	protein-coding
19-PTNLD28-TUMOR_peak_15661	chr10	113632385	113632657	+	12.95871	NA	Intergenic	Intergenic	311016	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_106322	chr9	131768996	131769254	+	12.95871	NA	TTS (NM_001287046)	TTS (NM_001287046)	21507	NM_020145	56904	Hs.460238	NM_020145	HPRD:15334	SH3GLB2	PP6569|PP9455|RRIG1	SH3-domain GRB2-like endophilin B2	protein-coding
19-PTNLD28-TUMOR_peak_99995	chr8	106859576	106859821	+	12.95871	NA	intron (NR_125796, intron 2 of 7)	L1M3de|LINE|L1	213033	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37473	chr16	33250293	33250452	+	12.95773	NA	Intergenic	Intergenic	-11746	NR_110911	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_104109	chr9	84303793	84303990	+	12.95630	NA	promoter-TSS (NM_005077)	promoter-TSS (NM_005077)	-295	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_64473	chr22	20921324	20921496	+	12.95517	NA	intron (NM_001293236, intron 6 of 15)	intron (NM_001293236, intron 6 of 15)	59075	NM_001293237	51586	Hs.517421	NM_015889	HPRD:12117	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
19-PTNLD28-TUMOR_peak_199	chr1	2064074	2064265	+	12.95053	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	28014	NM_001033582	5590	Hs.496255	NM_002744	HPRD:01504	PRKCZ	PKC-ZETA|PKC2	protein kinase C, zeta	protein-coding
19-PTNLD28-TUMOR_peak_22146	chr11	130026658	130026800	+	12.95053	NA	Intergenic	Intergenic	-2953	NM_021978	6768	Hs.504315	NM_021978	HPRD:06005	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
19-PTNLD28-TUMOR_peak_96392	chr7	151180462	151180701	+	12.94868	NA	intron (NM_005614, intron 3 of 7)	AluSx|SINE|Alu	36429	NM_005614	6009	Hs.283521	NM_005614	HPRD:03188	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding
19-PTNLD28-TUMOR_peak_48728	chr19	36359293	36359678	+	12.94868	NA	promoter-TSS (NM_005166)	promoter-TSS (NM_005166)	84	NM_005166	333	Hs.74565	NM_005166	HPRD:00102	APLP1	APLP	amyloid beta (A4) precursor-like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102568	chr9	27539776	27540376	+	12.94868	NA	Intergenic	Intergenic	-10226	NM_024761	79817	Hs.369022	NM_024761	HPRD:14728	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
19-PTNLD28-TUMOR_peak_94340	chr7	100322965	100323172	+	12.94868	NA	Intergenic	Intergenic	4645	NM_000799	2056	Hs.2303	NM_000799	HPRD:00586	EPO	EP|MVCD2	erythropoietin	protein-coding
19-PTNLD28-TUMOR_peak_105007	chr9	103188879	103189058	+	12.94602	NA	promoter-TSS (NM_001198805)	promoter-TSS (NM_001198805)	-527	NM_080655	91283	Hs.530272	NM_080655		MSANTD3	C9orf30	Myb/SANT-like DNA-binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_86619	chr6	31494178	31494355	+	12.94538	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2473	NM_001011700	401250	Hs.558922	NM_001011700		MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
19-PTNLD28-TUMOR_peak_82775	chr5	141237702	141238054	+	12.94538	NA	intron (NM_032420, intron 3 of 4)	intron (NM_032420, intron 3 of 4)	7889	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_31142	chr14	71289537	71289669	+	12.94538	NA	Intergenic	Intergenic	-13715	NM_033141	4293	Hs.445496	NM_033141	HPRD:15965	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_34078	chr15	66796931	66797937	+	12.94379	NA	promoter-TSS (NM_000968)	promoter-TSS (NM_000968)	13	NM_001287822	55055	Hs.21331	NM_017975	HPRD:07640	ZWILCH	KNTC1AP|hZwilch	zwilch kinetochore protein	protein-coding
19-PTNLD28-TUMOR_peak_10589	chr1	228141437	228141603	+	12.94379	NA	Intergenic	Intergenic	-5844	NM_003395	7483	Hs.149504	NM_003395		WNT9A	WNT14	wingless-type MMTV integration site family, member 9A	protein-coding
19-PTNLD28-TUMOR_peak_46354	chr18	74921013	74921163	+	12.94379	NA	Intergenic	L1MDa|LINE|L1	-40920	NM_001480	2587	Hs.272191	NM_001480		GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_59254	chr2	241497359	241497517	+	12.93409	NA	promoter-TSS (NM_001282781)	promoter-TSS (NM_001282781)	0	NM_001282780	51281	Hs.656615	NM_016552	HPRD:10646	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_93788	chr7	86848235	86848502	+	12.93019	NA	intron (NM_024315, intron 1 of 3)	intron (NM_024315, intron 1 of 3)	663	NM_024315	79161	Hs.619593	NM_024315	HPRD:12911	TMEM243	C7orf23|MM-TRAG	transmembrane protein 243, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_16130	chr10	126408025	126408260	+	12.92890	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	15545	NR_120630	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_101620	chr8	144437861	144438041	+	12.91960	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	4196	NM_001258446	116447	Hs.528574	NM_052963	HPRD:16214	TOP1MT	-	topoisomerase (DNA) I, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_98014	chr8	30027878	30027995	+	12.91960	NA	intron (NM_006571, intron 2 of 6)	intron (NM_006571, intron 2 of 6)	14123	NM_006571	10671	Hs.158427	NM_006571	HPRD:09907	DCTN6	WS-3|WS3|p27	dynactin 6	protein-coding
19-PTNLD28-TUMOR_peak_80613	chr5	72569589	72569775	+	12.91960	NA	Intergenic	Intergenic	100659	NM_153217	134288	Hs.508588	NM_153217	HPRD:14432	TMEM174	-	transmembrane protein 174	protein-coding
19-PTNLD28-TUMOR_peak_56309	chr2	151896569	151896874	+	12.91960	NA	Intergenic	Intergenic	221668	NM_198557	375287	Hs.302442	NM_198557	HPRD:10992	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
19-PTNLD28-TUMOR_peak_4136	chr1	66029960	66030227	+	12.91960	NA	intron (NM_001198687, intron 1 of 18)	L1PA2|LINE|L1	38721	NM_001198689	3953	Hs.23581	NM_002303	HPRD:03001	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
19-PTNLD28-TUMOR_peak_49275	chr19	44240193	44240543	+	12.91960	NA	intron (NM_019108, intron 9 of 13)	MIRb|SINE|MIR	18774	NM_019108	56006	Hs.466875	NM_019108	HPRD:07800	SMG9	C19orf61|F17127_1	SMG9 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_109283	chrX	118370138	118370548	+	12.91960	NA	exon (NM_006667, exon 1 of 3)	exon (NM_006667, exon 1 of 3)	135	NM_001282621	10857	Hs.90061	NM_006667	HPRD:02338	PGRMC1	HPR6.6|MPR	progesterone receptor membrane component 1	protein-coding
19-PTNLD28-TUMOR_peak_32871	chr15	31592570	31592723	+	12.91960	NA	Intergenic	Intergenic	-26437	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_5611	chr1	113287001	113287170	+	12.91960	NA	Intergenic	CpG	23896	NM_001004440	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_82031	chr5	130068222	130068385	+	12.91956	NA	Intergenic	L1PA2|LINE|L1	432738	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_8227	chr1	172513706	172514112	+	12.91956	NA	intron (NM_014283, intron 1 of 23)	L2c|LINE|L2	11651	NM_001282750	51430	Hs.204559	NM_014283	HPRD:12732	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
19-PTNLD28-TUMOR_peak_30758	chr14	64887952	64888267	+	12.91956	NA	intron (NM_005956, intron 8 of 27)	intron (NM_005956, intron 8 of 27)	33350	NM_005956	4522	Hs.652308	NM_005956	HPRD:01403	MTHFD1	MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_37652	chr16	48089044	48089185	+	12.91956	NA	Intergenic	Intergenic	91567	NM_033226	94160	Hs.410111	NM_033226	HPRD:06128	ABCC12	MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
19-PTNLD28-TUMOR_peak_88496	chr6	81320686	81320840	+	12.91956	NA	Intergenic	Intergenic	504419	NM_183050	594	Hs.654441	NM_000056	HPRD:02011	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_5659	chr1	114285286	114285389	+	12.91956	NA	intron (NM_006608, intron 2 of 17)	Tigger3b|DNA|TcMar-Tigger	16440	NM_006608	10745	Hs.655824	NM_006608	HPRD:09227	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_27457	chr13	24040537	24041070	+	12.91956	NA	Intergenic	CpG	-2848	NR_038995	100506697	Hs.50118	NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
19-PTNLD28-TUMOR_peak_16911	chr11	7567463	7567728	+	12.91956	NA	intron (NM_003621, intron 1 of 23)	intron (NM_003621, intron 1 of 23)	32599	NM_003621	8495	Hs.655714	NM_003621	HPRD:04391	PPFIBP2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding
19-PTNLD28-TUMOR_peak_72642	chr3	181919378	181919530	+	12.91956	NA	Intergenic	Intergenic	249302	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_78672	chr5	1437712	1437831	+	12.91956	NA	intron (NM_001044, intron 3 of 14)	intron (NM_001044, intron 3 of 14)	7772	NM_001044	6531	Hs.406	NM_001044	HPRD:00543	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 (neurotransmitter transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_3729	chr1	56517734	56518170	+	12.91956	NA	Intergenic	Intergenic	527305	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_19598	chr11	68426684	68426877	+	12.91956	NA	Intergenic	Intergenic	-25203	NM_015973	51083	Hs.278959	NM_015973	HPRD:00658	GAL	GAL-GMAP|GALN|GLNN|GMAP	galanin/GMAP prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_16324	chr10	134211514	134211650	+	12.91948	NA	intron (NM_001098637, intron 1 of 2)	intron (NM_001098637, intron 1 of 2)	880	NM_001098637	170394	Hs.527751	NM_138499	HPRD:11465	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_71424	chr3	142838104	142838334	+	12.91948	NA	promoter-TSS (NM_004267)	promoter-TSS (NM_004267)	-399	NM_004267	9435	Hs.8786	NM_004267		CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_85337	chr6	11273782	11273987	+	12.91948	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-40969	NM_001271033	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_2184	chr1	33358529	33359003	+	12.91948	NA	intron (NM_002143, intron 2 of 3)	CpG	6668	NM_002143	3208	Hs.632391	NM_002143	HPRD:00811	HPCA	BDR2	hippocalcin	protein-coding
19-PTNLD28-TUMOR_peak_14074	chr10	71615485	71615761	+	12.91948	NA	intron (NM_080798, intron 3 of 34)	intron (NM_080798, intron 3 of 34)	53979	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_75596	chr4	69922709	69922920	+	12.91948	NA	Intergenic	LTR2B|LTR|ERV1	-36699	NM_001075	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	UDP glucuronosyltransferase 2 family, polypeptide B10	protein-coding
19-PTNLD28-TUMOR_peak_48150	chr19	19477657	19477977	+	12.91948	NA	Intergenic	Intergenic	-18825	NM_017660	54815	Hs.118964	NM_017660	HPRD:11741	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_93852	chr7	89810040	89810238	+	12.91948	NA	intron (NR_110029, intron 2 of 2)	intron (NR_110029, intron 2 of 2)	26450	NM_012449	26872	Hs.61635	NM_012449	HPRD:05106	STEAP1	PRSS24|STEAP	six transmembrane epithelial antigen of the prostate 1	protein-coding
19-PTNLD28-TUMOR_peak_72989	chr3	186782097	186782310	+	12.91686	NA	intron (NM_173216, intron 5 of 7)	LTR37A|LTR|ERV1	42538	NM_003032	6480	Hs.207459	NM_003032	HPRD:00184	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	protein-coding
19-PTNLD28-TUMOR_peak_64140	chr21	48108637	48108755	+	12.91686	NA	Intergenic	LTR10C|LTR|ERV1	53189	NM_206962	3275	Hs.154163	NM_001535	HPRD:09060	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_46536	chr19	1026504	1026631	+	12.91686	NA	5' UTR (NM_004368, exon 1 of 7)	5' UTR (NM_004368, exon 1 of 7)	269	NM_004368	1265	Hs.651512	NM_004368	HPRD:03847	CNN2	-	calponin 2	protein-coding
19-PTNLD28-TUMOR_peak_39545	chr16	90245510	90245623	+	12.91668	NA	Intergenic	AluSz|SINE|Alu	-103228	NM_001098173	11105	Hs.406695	NM_052996	HPRD:17903	PRDM7	PFM4|ZNF910	PR domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_5514	chr1	111505870	111506238	+	12.91668	NA	intron (NM_018372, intron 1 of 3)	CpG	512	NM_018372	55791	Hs.25245	NM_018372	HPRD:17975	LRIF1	C1orf103|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_64274	chr22	18574728	18574902	+	12.91668	NA	Intergenic	Intergenic	14055	NM_001127649	55670	Hs.517400	NM_017929		PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
19-PTNLD28-TUMOR_peak_13360	chr10	46952744	46952966	+	12.91668	NA	Intergenic	LTR78|LTR|ERV1	17746	NM_031912	83849	Hs.696346	NM_031912	HPRD:12161	SYT15	CHR10SYT|sytXV	synaptotagmin XV	protein-coding
19-PTNLD28-TUMOR_peak_25098	chr12	67462520	67462980	+	12.91235	NA	Intergenic	CpG	27314	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_23918	chr12	45827929	45828156	+	12.91235	NA	intron (NM_001142679, intron 19 of 19)	intron (NM_001142679, intron 19 of 19)	141576	NM_001142678	196527	Hs.505339	NM_001025356	HPRD:18746	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
19-PTNLD28-TUMOR_peak_21893	chr11	125278272	125278663	+	12.91235	NA	intron (NM_022062, intron 7 of 12)	intron (NM_022062, intron 7 of 12)	87739	NM_005103	9638	Hs.224008	NM_005103	HPRD:09212	FEZ1	-	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
19-PTNLD28-TUMOR_peak_50	chr1	654073	654206	+	12.91041	NA	Intergenic	AluSz|SINE|Alu	11592	NR_028327	100133331	Hs.733048	NR_028327		LOC100133331	-	uncharacterized LOC100133331	ncRNA
19-PTNLD28-TUMOR_peak_19146	chr11	64122658	64122881	+	12.90820	NA	exon (NM_032251, exon 25 of 27)	exon (NM_032251, exon 25 of 27)	-3856	NM_001006944	8986	Hs.105584	NM_003942	HPRD:04677	RPS6KA4	MSK2|RSK-B	ribosomal protein S6 kinase, 90kDa, polypeptide 4	protein-coding
19-PTNLD28-TUMOR_peak_48028	chr19	18302870	18302987	+	12.90256	NA	Intergenic	MER51B|LTR|ERV1	-1112	NM_032683	84769	Hs.515254	NM_032683	HPRD:13324	MPV17L2	FKSG24	MPV17 mitochondrial membrane protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_65756	chr22	42977357	42977755	+	12.90064	NA	intron (NR_002184, intron 1 of 6)	L2c|LINE|L2	461	NR_002184	91695	Hs.534041	NR_002184	ENSG00000182841	RRP7B	dJ222E13.2	ribosomal RNA processing 7 homolog B (S. cerevisiae)	pseudo
19-PTNLD28-TUMOR_peak_88763	chr6	90995395	90995585	+	12.90064	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	11137	NM_021813	60468	Hs.269764	NM_021813	HPRD:12012	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_85332	chr6	11251613	11251885	+	12.90064	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-18834	NM_001271033	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_82761	chr5	141137038	141137282	+	12.90064	NA	Intergenic	Intergenic	-75360	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_30451	chr14	55921023	55921604	+	12.90064	NA	Intergenic	Intergenic	-14050	NM_199047	387332	Hs.528278	NM_199047		TBPL2	TBP2|TRF3	TATA box binding protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_6883	chr1	152432793	152432971	+	12.90064	NA	Intergenic	Intergenic	-46132	NM_016190	49860	Hs.242057	NM_016190	HPRD:12720	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
19-PTNLD28-TUMOR_peak_65543	chr22	39323410	39323595	+	12.89810	NA	Intergenic	CpG	-30025	NM_145699	200315	Hs.226307	NM_145699	HPRD:06168	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A	protein-coding
19-PTNLD28-TUMOR_peak_85021	chr6	5037382	5037491	+	12.89810	NA	Intergenic	SVA_E|Other|Other	-33139	NM_001286132	10799	Hs.511756	NM_006638	HPRD:09361	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_73586	chr3	196366546	196366848	+	12.89810	NA	promoter-TSS (NM_198565)	promoter-TSS (NM_198565)	41	NM_198565	375387	Hs.702186	NM_198565	HPRD:17452	NRROS	GARPL1|LRRC33|UNQ3030	negative regulator of reactive oxygen species	protein-coding
19-PTNLD28-TUMOR_peak_101524	chr8	143279488	143279734	+	12.89810	NA	promoter-TSS (NR_024378)	promoter-TSS (NR_024378)	-106	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
19-PTNLD28-TUMOR_peak_33454	chr15	45932905	45933081	+	12.89810	NA	intron (NM_021199, intron 1 of 9)	intron (NM_021199, intron 1 of 9)	6055	NM_021199	58472	Hs.511251	NM_021199	HPRD:18102	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_32556	chr15	22893638	22893775	+	12.89771	NA	intron (NM_014608, intron 1 of 30)	CpG	1057	NM_001287810	23191	Hs.26704	NM_014608	HPRD:05890	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_105768	chr9	122043020	122043657	+	12.89771	NA	intron (NM_014618, intron 2 of 7)	intron (NM_014618, intron 2 of 7)	88401	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_72814	chr3	184434681	184434812	+	12.89771	NA	Intergenic	Intergenic	-4910	NM_022149	64110	Hs.306123	NM_022149	HPRD:14348	MAGEF1	-	melanoma antigen family F, 1	protein-coding
19-PTNLD28-TUMOR_peak_99576	chr8	96210485	96210750	+	12.89230	NA	Intergenic	Intergenic	17985	NR_046232	619344	Hs.741630	NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
19-PTNLD28-TUMOR_peak_74616	chr4	15791828	15791975	+	12.89230	NA	intron (NM_001775, intron 1 of 7)	SVA_D|Other|Other	11970	NM_001775	952	Hs.479214	NM_001775		CD38	ADPRC 1|T10	CD38 molecule	protein-coding
19-PTNLD28-TUMOR_peak_18096	chr11	36287661	36287851	+	12.89230	NA	Intergenic	Intergenic	23243	NM_001101653	29099	Hs.279836	NM_014186		COMMD9	-	COMM domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_81960	chr5	126764623	126764809	+	12.89230	NA	intron (NM_001256545, intron 13 of 24)	intron (NM_001256545, intron 13 of 24)	-88585	NM_130809	133619	Hs.483259	NM_130809	HPRD:14052	PRRC1	-	proline-rich coiled-coil 1	protein-coding
19-PTNLD28-TUMOR_peak_45766	chr18	48507786	48508050	+	12.89230	NA	intron (NM_018696, intron 2 of 3)	intron (NM_018696, intron 2 of 3)	13531	NM_018696	55520	Hs.657360	NM_018696	HPRD:16275	ELAC1	D29	elaC ribonuclease Z 1	protein-coding
19-PTNLD28-TUMOR_peak_4865	chr1	92261168	92261490	+	12.89230	NA	intron (NM_001195684, intron 4 of 17)	intron (NM_001195684, intron 4 of 17)	90507	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_83358	chr5	153559793	153559952	+	12.89230	NA	Intergenic	Intergenic	-10423	NM_198321	55568	Hs.631797	NM_017540	HPRD:12157	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_51297	chr2	16146437	16146655	+	12.89230	NA	Intergenic	Intergenic	-64701	NR_110230	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_79118	chr5	16736384	16736682	+	12.89230	NA	intron (NM_012334, intron 19 of 40)	intron (NM_012334, intron 19 of 40)	-119366	NM_001034850	54463	Hs.481704	NM_019000	HPRD:07879	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
19-PTNLD28-TUMOR_peak_16215	chr10	128556196	128556602	+	12.89230	NA	Intergenic	Intergenic	-37579	NM_001290223	1793	Hs.159195	NM_001380	HPRD:03240	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
19-PTNLD28-TUMOR_peak_90985	chr7	3312279	3312653	+	12.89230	NA	Intergenic	CR1_Mam|LINE|CR1	-28614	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_34112	chr15	67316847	67317111	+	12.89230	NA	Intergenic	Intergenic	-41216	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_16880	chr11	6608900	6609117	+	12.89230	NA	Intergenic	MER52A|LTR|ERV1	15872	NM_015324	23378	Hs.652255	NM_015324		RRP8	KIAA0409|NML	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_99926	chr8	104357117	104357316	+	12.89230	NA	Intergenic	Intergenic	-26527	NM_138455	115908	Hs.405614	NM_138455	HPRD:16772	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_104776	chr9	98460069	98460379	+	12.89230	NA	Intergenic	L1HS|LINE|L1	-177676	NM_001010895	375748	Hs.432364	NM_020207	HPRD:17362	ERCC6L2	BMFS2|C9orf102|RAD26L|SR278	excision repair cross-complementation group 6-like 2	protein-coding
19-PTNLD28-TUMOR_peak_65707	chr22	42142650	42142791	+	12.89230	NA	intron (NM_152513, intron 14 of 30)	intron (NM_152513, intron 14 of 30)	47202	NM_152513	150365	Hs.116419	NM_152513	ENSG00000167077	MEI1	SPATA38	meiosis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_57456	chr2	191283524	191283795	+	12.89230	NA	intron (NM_017694, intron 2 of 7)	intron (NM_017694, intron 2 of 7)	10578	NM_017694	54842	Hs.418581	NM_017694	HPRD:13369	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_103840	chr9	75107283	75107493	+	12.89230	NA	Intergenic	AluY|SINE|Alu	-29329	NM_138691	117531	Hs.670211	NM_138691	HPRD:05988	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel-like 1	protein-coding
19-PTNLD28-TUMOR_peak_108966	chrX	100294767	100294957	+	12.89230	NA	intron (NM_024917, intron 4 of 13)	AluJb|SINE|Alu	12243	NM_001167971	79979	Hs.496501	NM_024917	HPRD:06520	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_95553	chr7	135196996	135197142	+	12.88955	NA	Intergenic	Intergenic	-2194	NM_001190848	4850	Hs.490224	NM_013316	HPRD:05369	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex, subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_101450	chr8	142163700	142163861	+	12.88954	NA	intron (NM_014957, intron 7 of 22)	intron (NM_014957, intron 7 of 22)	25060	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_16437	chr11	135260	135443	+	12.88808	NA	Intergenic	Intergenic	-3431	NR_028326	100133161	Hs.645398	NR_028326		LINC01001	-	long intergenic non-protein coding RNA 1001	ncRNA
19-PTNLD28-TUMOR_peak_97606	chr8	22480440	22480605	+	12.88725	NA	intron (NM_018688, intron 8 of 8)	intron (NM_018688, intron 8 of 8)	17983	NM_021174	57805	Hs.744848	NM_021174	HPRD:09159	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_61594	chr20	46996282	46996720	+	12.88323	NA	intron (NR_026958, intron 4 of 4)	intron (NR_026958, intron 4 of 4)	7847	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_85707	chr6	17580406	17580576	+	12.88323	NA	Intergenic	AluY|SINE|Alu	-20027	NM_016255	51439	Hs.95260	NM_016255	HPRD:13316	FAM8A1	AHCP	family with sequence similarity 8, member A1	protein-coding
19-PTNLD28-TUMOR_peak_41842	chr17	43698027	43698249	+	12.88323	NA	non-coding (NR_027295, exon 1 of 4).2	non-coding (NR_027295, exon 1 of 4).2	157	NR_027295	401884	Hs.654930	NR_026680	ENSG00000204650	MGC57346	-	uncharacterized LOC401884	ncRNA
19-PTNLD28-TUMOR_peak_86885	chr6	33736465	33736644	+	12.88323	NA	Intergenic	Intergenic	18165	NM_001143944	221496	Hs.444845	NM_181336	HPRD:13984	LEMD2	NET25|dJ482C21.1	LEM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_19031	chr11	62574171	62574293	+	12.88282	NA	TTS (NM_003164)	TTS (NM_003164)	-1268	NM_001081491	10482	Hs.523739	NM_006362	HPRD:04035	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
19-PTNLD28-TUMOR_peak_19744	chr11	70414262	70414506	+	12.88028	NA	intron (NR_110766, intron 2 of 8)	intron (NR_110766, intron 2 of 8)	-62815	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99563	chr8	95834978	95835154	+	12.88028	NA	promoter-TSS (NM_017864)	promoter-TSS (NM_017864)	-452	NR_073444	55656	Hs.727669	NM_017864	HPRD:08626	INTS8	C8orf52|INT8	integrator complex subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_34140	chr15	68136051	68136462	+	12.88028	NA	Intergenic	Intergenic	-3873	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_6568	chr1	148951349	148951523	+	12.88028	NA	non-coding (NR_027355, exon 4 of 4)	non-coding (NR_027355, exon 4 of 4)	21031	NR_027354	645166	Hs.744183	NR_027354	ENSG00000232527	LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_38988	chr16	81741019	81741219	+	12.88028	NA	intron (NM_198390, intron 20 of 20)	L2a|LINE|L2	42160	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
19-PTNLD28-TUMOR_peak_59618	chr20	4203220	4203345	+	12.87619	NA	intron (NM_000678, intron 1 of 1)	LTR64|LTR|ERV1	26377	NM_000678	146	Hs.557	NM_000678	HPRD:00079	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
19-PTNLD28-TUMOR_peak_109934	chrX	153274690	153274873	+	12.87619	NA	Intergenic	AluSq2|SINE|Alu	10561	NM_001025242	3654	Hs.522819	NM_001569	HPRD:02235	IRAK1	IRAK|pelle	interleukin-1 receptor-associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_43992	chr17	79603750	79604284	+	12.87619	NA	promoter-TSS (NM_001290212)	promoter-TSS (NM_001290212)	121	NM_017921	55666	Hs.464333	NM_017921	HPRD:06975	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61665	chr20	47959963	47960085	+	12.86906	NA	Intergenic	Intergenic	62804	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
19-PTNLD28-TUMOR_peak_39371	chr16	88700865	88701084	+	12.86806	NA	Intergenic	CpG	-4027	NM_013278	27189	Hs.278911	NM_013278	HPRD:06863	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
19-PTNLD28-TUMOR_peak_47801	chr19	16370743	16370907	+	12.86768	NA	Intergenic	Intergenic	62160	NM_032493	8907	Hs.71040	NM_032493	HPRD:04639	AP1M1	AP47|CLAPM2|CLTNM|MU-1A	adaptor-related protein complex 1, mu 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_39924	chr17	6615764	6616003	+	12.86768	NA	intron (NM_001284509, intron 1 of 11)	intron (NM_001284509, intron 1 of 11)	857	NM_001284509	284111	Hs.399496	NM_177550	HPRD:10512	SLC13A5	EIEE25|NACT|mIndy	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_26691	chr12	121079264	121079388	+	12.86768	NA	intron (NM_001033677, intron 1 of 5)	CpG	904	NM_001033677	9478	Hs.458482	NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_94117	chr7	97643193	97643358	+	12.86768	NA	Intergenic	AluJr|SINE|Alu	-23859	NM_006188	4951	Hs.510456	NM_006188	HPRD:01274	OCM2	OCM	oncomodulin 2	protein-coding
19-PTNLD28-TUMOR_peak_61876	chr20	49530629	49530814	+	12.86768	NA	intron (NM_001282531, intron 2 of 5)	intron (NM_001282531, intron 2 of 5)	-4393	NM_001282532	23394	Hs.293736	NM_015339	HPRD:09793	ADNP	ADNP1|MRD28	activity-dependent neuroprotector homeobox	protein-coding
19-PTNLD28-TUMOR_peak_34366	chr15	72447535	72447885	+	12.86768	NA	Intergenic	Intergenic	37079	NM_145204	123228	Hs.513002	NM_145204	HPRD:09784	SENP8	DEN1|NEDP1|PRSC2	SUMO/sentrin specific peptidase family member 8	protein-coding
19-PTNLD28-TUMOR_peak_25167	chr12	69028115	69028233	+	12.86768	NA	intron (NM_001251917, intron 1 of 5)	MIR|SINE|MIR	-7019	NR_033335	100379132	Hs.724530	NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
19-PTNLD28-TUMOR_peak_20986	chr11	107436256	107436536	+	12.86768	NA	promoter-TSS (NM_138775)	promoter-TSS (NM_138775)	65	NM_138775	91801	Hs.503763	NM_138775	HPRD:14287	ALKBH8	ABH8	alkB, alkylation repair homolog 8 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_58854	chr2	232650927	232651586	+	12.86768	NA	intron (NM_001282952, intron 1 of 5)	CpG	163	NM_001282952	64708	Hs.335061	NM_022730	HPRD:09889	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
19-PTNLD28-TUMOR_peak_81982	chr5	127292871	127293049	+	12.86768	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	125806	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
19-PTNLD28-TUMOR_peak_41587	chr17	41173180	41173358	+	12.86632	NA	intron (NM_006373, intron 1 of 5)	intron (NM_006373, intron 1 of 5)	1190	NM_006373	10493	Hs.514199	NM_006373	HPRD:05220	VAT1	VATI	vesicle amine transport 1	protein-coding
19-PTNLD28-TUMOR_peak_50207	chr19	53899336	53899451	+	12.86632	NA	intron (NM_001040185, intron 1 of 3)	intron (NM_001040185, intron 1 of 3)	996	NM_001040185	91661	Hs.685640	NM_138372	HPRD:14285	ZNF765	-	zinc finger protein 765	protein-coding
19-PTNLD28-TUMOR_peak_7567	chr1	159988838	159988979	+	12.86132	NA	Intergenic	Intergenic	12875	NM_145167	93183	Hs.552810	NM_145167	HPRD:15133	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding
19-PTNLD28-TUMOR_peak_84770	chr6	2021283	2021533	+	12.86132	NA	intron (NM_001500, intron 4 of 10)	intron (NM_001500, intron 4 of 10)	154817	NM_001253846	2762	Hs.144496	NM_001500	HPRD:11925	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_16789	chr11	3975830	3976005	+	12.86132	NA	intron (NM_001277962, intron 1 of 12)	L2c|LINE|L2	98625	NR_039835	100616453		NR_039835	miRBase:MI0017319	MIR4687	-	microRNA 4687	ncRNA
19-PTNLD28-TUMOR_peak_100586	chr8	125259761	125259960	+	12.86132	NA	promoter-TSS (NR_125420)	promoter-TSS (NR_125420)	-221	NR_125420	101927588	Hs.617072	NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
19-PTNLD28-TUMOR_peak_89945	chr6	150168806	150168928	+	12.86132	NA	intron (NM_032832, intron 2 of 6)	intron (NM_032832, intron 2 of 6)	-15767	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39084	chr16	84390183	84390389	+	12.86132	NA	Intergenic	L2a|LINE|L2	-11843	NM_014861	9914	Hs.6168	NM_014861	HPRD:13812	ATP2C2	SPCA2	ATPase, Ca++ transporting, type 2C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_1920	chr1	29681189	29681299	+	12.86132	NA	Intergenic	L2|LINE|L2	-4618	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LOC101928460	-	uncharacterized LOC101928460	ncRNA
19-PTNLD28-TUMOR_peak_13671	chr10	54711726	54711892	+	12.86132	NA	Intergenic	HERVS71-int|LTR|ERV1	-180349	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_91304	chr7	12443530	12443752	+	12.86132	NA	5' UTR (NM_001135924, exon 1 of 29)	5' UTR (NM_001135924, exon 1 of 29)	211	NM_001135924	221806	Hs.669526	NM_001135924	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
19-PTNLD28-TUMOR_peak_64646	chr22	23053353	23053464	+	12.86132	NA	Intergenic	Intergenic	64626	NM_199127	91227	Hs.450000	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_69571	chr3	107089930	107090220	+	12.86132	NA	Intergenic	Intergenic	-6113	NM_032600	84692	Hs.164799	NM_032600	HPRD:14860	CCDC54	NYD-SP17|SP17	coiled-coil domain containing 54	protein-coding
19-PTNLD28-TUMOR_peak_21775	chr11	122981108	122981367	+	12.86132	NA	intron (NM_024769, intron 1 of 6)	AluSx|SINE|Alu	-48194	NM_153201	3312	Hs.180414	NM_006597	HPRD:07205	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock 70kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_63133	chr21	32783090	32783325	+	12.86132	NA	intron (NM_003253, intron 2 of 28)	intron (NM_003253, intron 2 of 28)	148083	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_36690	chr16	20752472	20752769	+	12.85804	NA	intron (NM_017736, intron 1 of 3)	intron (NM_017736, intron 1 of 3)	579	NM_017736	55623	Hs.700004	NM_017736	HPRD:08619	THUMPD1	-	THUMP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38271	chr16	66967811	66967994	+	12.85804	NA	promoter-TSS (NM_003869)	promoter-TSS (NM_003869)	424	NM_016062	51647	Hs.9825	NM_016062	HPRD:13033	FAM96B	MIP18	family with sequence similarity 96, member B	protein-coding
19-PTNLD28-TUMOR_peak_73042	chr3	187693449	187693737	+	12.85804	NA	Intergenic	Intergenic	-178068	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_50948	chr2	9246406	9246775	+	12.85804	NA	Intergenic	Intergenic	-100304	NM_001135191	8853	Hs.555902	NM_003887	HPRD:04820	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
19-PTNLD28-TUMOR_peak_92632	chr7	55188995	55189248	+	12.85804	NA	intron (NM_201284, intron 1 of 15)	intron (NM_201284, intron 1 of 15)	67521	NR_047551	100507500	Hs.720489	NR_047551	ENSG00000224057	EGFR-AS1	-	EGFR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100522	chr8	124407843	124408325	+	12.85804	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	621	NM_014109	29028	Hs.370834	NM_014109	HPRD:10678	ATAD2	ANCCA|CT137|PRO2000	ATPase family, AAA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_74438	chr4	9538770	9538997	+	12.85622	NA	Intergenic	Intergenic	19054	NR_031688	100302277		NR_031688	miRBase:MI0006422	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2	microRNA 548i-2	ncRNA
19-PTNLD28-TUMOR_peak_19733	chr11	70117089	70117337	+	12.85538	NA	intron (NM_003626, intron 1 of 27)	CpG	407	NM_177423	8500	Hs.530749	NM_003626	HPRD:11451	PPFIA1	LIP.1|LIP1|LIPRIN	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_18763	chr11	59435696	59436277	+	12.85538	NA	intron (NM_152716, intron 1 of 18)	intron (NM_152716, intron 1 of 18)	525	NM_152716	219988	Hs.591960	NM_152716	HPRD:08214	PATL1	Pat1b|hPat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_64286	chr22	18682508	18682631	+	12.85127	NA	Intergenic	Intergenic	49811	NM_017414	11274	Hs.38260	NM_017414	HPRD:06136	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding
19-PTNLD28-TUMOR_peak_24652	chr12	56400717	56400954	+	12.85127	NA	Intergenic	MER4A1|LTR|ERV1	9792	NM_000456	6821	Hs.558403	NM_000456	HPRD:06055	SUOX	-	sulfite oxidase	protein-coding
19-PTNLD28-TUMOR_peak_105878	chr9	124212684	124212921	+	12.85127	NA	Intergenic	Intergenic	49504	NR_045211	2681	Hs.97469	NR_003191	ENSG00000204136	GGTA1P	GGTA|GGTA1|GLYT2|a1/3GTP	glycoprotein, alpha-galactosyltransferase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58896	chr2	233766795	233766919	+	12.85127	NA	intron (NM_019850, intron 5 of 14)	intron (NM_019850, intron 5 of 14)	26004	NM_001114090	25791	Hs.97316	NM_019850	HPRD:10442	NGEF	ARHGEF27|EPHEXIN	neuronal guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_48967	chr19	39564394	39564528	+	12.85127	NA	Intergenic	Intergenic	-10484	NM_001004318	390928	Hs.448934	NM_001004318	HPRD:13361	PAPL	-	iron/zinc purple acid phosphatase-like protein	protein-coding
19-PTNLD28-TUMOR_peak_24400	chr12	53229829	53230088	+	12.85127	NA	Intergenic	Intergenic	-1881	NM_175834	338785	Hs.711471	NM_175834	HPRD:11183	KRT79	K6L|KRT6L	keratin 79	protein-coding
19-PTNLD28-TUMOR_peak_102735	chr9	33720101	33720319	+	12.85127	NA	Intergenic	Intergenic	18204	NR_109755	101929688	Hs.372465	NR_109755	ENSG00000233776	LINC01251	-	long intergenic non-protein coding RNA 1251	ncRNA
19-PTNLD28-TUMOR_peak_5286	chr1	108208272	108208451	+	12.85127	NA	intron (NM_006113, intron 19 of 26)	intron (NM_006113, intron 19 of 26)	22765	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_39569	chr17	685283	685841	+	12.85127	NA	promoter-TSS (NM_016080)	promoter-TSS (NM_016080)	9	NM_016080	51031	Hs.279061	NM_016080	HPRD:12678	GLOD4	C17orf25|HC71	glyoxalase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_5846	chr1	117452449	117452697	+	12.84989	NA	promoter-TSS (NM_020440)	promoter-TSS (NM_020440)	-116	NM_020440	5738	Hs.418093	NM_020440	HPRD:03124	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_65482	chr22	38599222	38599379	+	12.84989	NA	intron (NM_001161573, intron 1 of 2)	intron (NM_001161573, intron 1 of 2)	273	NM_001161573	23764	Hs.517617	NM_012323	HPRD:05343	MAFF	U-MAF|hMafF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F	protein-coding
19-PTNLD28-TUMOR_peak_73927	chr4	2795799	2796113	+	12.84680	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	1206	NM_001122681	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_66503	chr3	9993733	9994171	+	12.84109	NA	intron (NM_207351, intron 1 of 3)	CpG	126	NM_207351	285368	Hs.598147	NM_207351	HPRD:16935	PRRT3	-	proline-rich transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_5817	chr1	117027887	117028090	+	12.84109	NA	Intergenic	Intergenic	-66744	NR_027646	84852	Hs.664752	NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87927	chr6	52169909	52170067	+	12.84109	NA	Intergenic	Intergenic	-20309	NM_001270472	4172	Hs.179565	NM_002388	HPRD:04072	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
19-PTNLD28-TUMOR_peak_70643	chr3	128417592	128417840	+	12.84109	NA	Intergenic	Intergenic	-27263	NM_004637	7879	Hs.744853	NM_004637	HPRD:03805	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_18707	chr11	58395229	58395446	+	12.84015	NA	Intergenic	Intergenic	5191	NM_000614	1270	Hs.524920	NM_000614	HPRD:00347	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_90203	chr6	157343366	157343509	+	12.84015	NA	intron (NM_020732, intron 5 of 19)	intron (NM_020732, intron 5 of 19)	-242572	NR_039676	100616154		NR_039676	miRBase:MI0016817	MIR4466	-	microRNA 4466	ncRNA
19-PTNLD28-TUMOR_peak_42821	chr17	61539882	61540164	+	12.84015	NA	Intergenic	L3|LINE|CR1	-14399	NM_000789	1636	Hs.298469	NM_000789	HPRD:00108	ACE	ACE1|CD143|DCP|DCP1|ICH|MVCD3	angiotensin I converting enzyme	protein-coding
19-PTNLD28-TUMOR_peak_54542	chr2	101850781	101850982	+	12.84015	NA	Intergenic	LTR2|LTR|ERV1	-18464	NM_017546	55571	Hs.744080	NM_017546	HPRD:12812	CNOT11	C2orf29	CCR4-NOT transcription complex, subunit 11	protein-coding
19-PTNLD28-TUMOR_peak_65955	chr22	46374563	46374725	+	12.83518	NA	Intergenic	CpG-17986	-1636	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_86832	chr6	33343753	33344053	+	12.82869	NA	Intergenic	LTR8|LTR|ERV1	-15410	NM_002263	3833	Hs.436912	NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
19-PTNLD28-TUMOR_peak_46214	chr18	68049351	68049566	+	12.82861	NA	non-coding (NR_110764, exon 3 of 3)	non-coding (NR_110764, exon 3 of 3)	2369	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_7871	chr1	165086940	165087079	+	12.82775	NA	Intergenic	CpG	238469	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_54867	chr2	110969807	110970178	+	12.82655	NA	non-coding (NR_027063, exon 7 of 8)	non-coding (NR_027063, exon 7 of 8)	-7353	NM_000272	4867	Hs.280388	NM_000272	HPRD:02019	NPHP1	JBTS4|NPH1|SLSN1	nephronophthisis 1 (juvenile)	protein-coding
19-PTNLD28-TUMOR_peak_89359	chr6	125632312	125632472	+	12.82655	NA	Intergenic	Intergenic	-9110	NM_016063	51020	Hs.32826	NM_016063	HPRD:12897	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_16928	chr11	7883014	7883139	+	12.82655	NA	intron (NR_036678, intron 6 of 7)	L1PA2|LINE|L1	12478	NR_027711	26343	Hs.382973	NR_027711	ENSG00000170688	OR5E1P	HSTPCR24|OR5E1|TPCR24	olfactory receptor, family 5, subfamily E, member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12176	chr10	15902015	15902601	+	12.82655	NA	5' UTR (NM_024948, exon 1 of 15)	5' UTR (NM_024948, exon 1 of 15)	211	NM_024948	80013	Hs.158870	NM_024948	HPRD:10702	FAM188A	C10orf97|CARP|DERP5|MST126|my042	family with sequence similarity 188, member A	protein-coding
19-PTNLD28-TUMOR_peak_42341	chr17	50486961	50487199	+	12.82655	NA	Intergenic	L1PA2|LINE|L1	-249703	NM_001082534	56934	Hs.463466	NM_020178	HPRD:05224	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase X	protein-coding
19-PTNLD28-TUMOR_peak_2327	chr1	35390546	35390672	+	12.82655	NA	Intergenic	Intergenic	-19625	NM_001080418	58512	Hs.733945	NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3	discs, large (Drosophila) homolog-associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_72304	chr3	170807323	170807482	+	12.82655	NA	intron (NM_001161565, intron 21 of 30)	intron (NM_001161565, intron 21 of 30)	17146	NR_030295	693154		NR_030295		MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
19-PTNLD28-TUMOR_peak_36082	chr16	5307609	5307752	+	12.82655	NA	Intergenic	Intergenic	-159859	NM_001289029	196483	Hs.406461	NM_201400	HPRD:18018	FAM86A	-	family with sequence similarity 86, member A	protein-coding
19-PTNLD28-TUMOR_peak_40188	chr17	10031256	10031562	+	12.82655	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	70459	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_65511	chr22	38863936	38864296	+	12.82655	NA	promoter-TSS (NM_006855)	promoter-TSS (NM_006855)	49	NM_006855	11015	Hs.745072	NM_006855	HPRD:17177	KDELR3	ERD2L3	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_81033	chr5	84958874	84958989	+	12.82655	NA	Intergenic	L1PA2|LINE|L1	-619331	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	neuroblastoma breakpoint family, member 22, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31425	chr14	77552748	77552981	+	12.82655	NA	Intergenic	Intergenic	-10330	NR_110553	102724190	Hs.562528	NR_110553		LOC102724190	-	uncharacterized LOC102724190	ncRNA
19-PTNLD28-TUMOR_peak_59039	chr2	237421732	237421854	+	12.82655	NA	Intergenic	Intergenic	-5615	NR_073043	79781	Hs.591594	NM_024726	HPRD:13743	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
19-PTNLD28-TUMOR_peak_67864	chr3	45521593	45522101	+	12.82655	NA	intron (NM_015340, intron 10 of 21)	intron (NM_015340, intron 10 of 21)	29190	NR_048543	100885795	Hs.641094	NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1321	chr1	21595122	21595631	+	12.82655	NA	intron (NM_001113348, intron 4 of 18)	intron (NM_001113348, intron 4 of 18)	10807	NM_001113347	1889	Hs.195080	NM_001397	HPRD:02690	ECE1	ECE	endothelin converting enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_57617	chr2	197109677	197109881	+	12.82655	NA	intron (NM_020760, intron 19 of 28)	L2c|LINE|L2	-14969	NR_110225	101927482	Hs.191841	NR_110225	ENSG00000229056	LOC101927482	-	uncharacterized LOC101927482	ncRNA
19-PTNLD28-TUMOR_peak_65878	chr22	44982926	44983153	+	12.81623	NA	Intergenic	HAL1b|LINE|L1	17819	NR_028409	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_12792	chr10	31891477	31891643	+	12.81623	NA	Intergenic	Intergenic	281496	NM_001174094	6935	Hs.124503	NM_030751	HPRD:01798	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_33277	chr15	42184781	42184974	+	12.81623	NA	intron (NM_016642, intron 3 of 67)	intron (NM_016642, intron 3 of 67)	1398	NM_016642	51332	Hs.709819	NM_016642	HPRD:10438	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin, beta, non-erythrocytic 5	protein-coding
19-PTNLD28-TUMOR_peak_23493	chr12	26985340	26985667	+	12.81623	NA	intron (NM_002223, intron 1 of 56)	CpG	628	NM_002223	3709	Hs.512235	NM_002223	HPRD:02536	ITPR2	CFAP48|IP3R2	inositol 1,4,5-trisphosphate receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_66710	chr3	13045742	13046070	+	12.81593	NA	intron (NM_001134382, intron 1 of 14)	intron (NM_001134382, intron 1 of 14)	-36708	NM_014869	9922	Hs.475506	NM_014869	HPRD:11052	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
19-PTNLD28-TUMOR_peak_80016	chr5	56328063	56328250	+	12.81593	NA	Intergenic	Intergenic	-80199	NM_152622	166968	Hs.657594	NM_152622	HPRD:08199	MIER3	-	mesoderm induction early response 1, family member 3	protein-coding
19-PTNLD28-TUMOR_peak_59141	chr2	239142972	239143316	+	12.81593	NA	TTS (NR_026923)	TTS (NR_026923)	2817	NR_026923	643387	Hs.598359	NR_026923		LOC643387	-	TAR DNA binding protein pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65510	chr22	38857545	38857833	+	12.81593	NA	Intergenic	CpG	-6378	NM_016657	11015	Hs.745072	NM_006855	HPRD:17177	KDELR3	ERD2L3	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_84351	chr5	177209741	177210158	+	12.81593	NA	Intergenic	CpG	-2444	NM_173663	285596	Hs.368516	NM_173663	HPRD:14870	FAM153A	NY-REN-7	family with sequence similarity 153, member A	protein-coding
19-PTNLD28-TUMOR_peak_107728	chrX	19691642	19691816	+	12.81593	NA	intron (NM_001024666, intron 5 of 16)	intron (NM_001024666, intron 5 of 16)	-2610	NM_001184960	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_57926	chr2	204680082	204680256	+	12.81557	NA	Intergenic	Intergenic	-52342	NM_001037631	1493	Hs.247824	NM_005214	HPRD:00474	CTLA4	CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_50844	chr2	3492595	3492876	+	12.81557	NA	Intergenic	Intergenic	30615	NM_018269	55256	Hs.502773	NM_018269	HPRD:17607	ADI1	APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_499	chr1	8215673	8215873	+	12.81557	NA	Intergenic	Intergenic	-129380	NM_018948	54206	Hs.605445	NM_018948	HPRD:09218	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_40894	chr17	28667319	28667551	+	12.81557	NA	Intergenic	Intergenic	-6370	NM_206832	388364	Hs.371005	NM_206832	HPRD:18274	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_108293	chrX	49091853	49092177	+	12.81557	NA	promoter-TSS (NM_014008)	promoter-TSS (NM_014008)	88	NM_014008	28952	Hs.26333	NM_014008	HPRD:06594	CCDC22	CXorf37	coiled-coil domain containing 22	protein-coding
19-PTNLD28-TUMOR_peak_92227	chr7	43878471	43878757	+	12.81557	NA	Intergenic	Intergenic	30531	NM_032014	64951	Hs.284286	NM_032014	HPRD:17593	MRPS24	MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
19-PTNLD28-TUMOR_peak_78059	chr4	174089728	174089875	+	12.81557	NA	promoter-TSS (NM_017423)	promoter-TSS (NM_017423)	-103	NM_017423	51809	Hs.548088	NM_017423	HPRD:10386	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_19409	chr11	66337641	66337852	+	12.81557	NA	Intergenic	LTR8A|LTR|ERV1	-1699	NM_003793	8722	Hs.11590	NM_003793	HPRD:04643	CTSF	CATSF|CLN13	cathepsin F	protein-coding
19-PTNLD28-TUMOR_peak_50427	chr19	56168440	56168775	+	12.80991	NA	intron (NM_001012478, intron 1 of 11)	intron (NM_001012478, intron 1 of 11)	3191	NM_001012478	11338	Hs.528007	NM_007279	HPRD:01872	U2AF2	U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
19-PTNLD28-TUMOR_peak_92318	chr7	44835696	44835833	+	12.80984	NA	promoter-TSS (NM_001300981)	promoter-TSS (NM_001300981)	-471	NM_021130	5478	Hs.356331	NM_021130	HPRD:00457	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A (cyclophilin A)	protein-coding
19-PTNLD28-TUMOR_peak_43145	chr17	66755667	66755808	+	12.80443	NA	Intergenic	Intergenic	131442	NR_110825	101928104	Hs.569826	NR_110825	ENSG00000267659	LINC01482	-	long intergenic non-protein coding RNA 1482	ncRNA
19-PTNLD28-TUMOR_peak_86130	chr6	26297125	26297321	+	12.80443	NA	Intergenic	LTR53|LTR|ERVL	-11496	NM_003543	8365	Hs.591790	NM_003543	HPRD:11919	HIST1H4H	H4/h|H4FH	histone cluster 1, H4h	protein-coding
19-PTNLD28-TUMOR_peak_86847	chr6	33488883	33489098	+	12.80443	NA	Intergenic	LTR12C|LTR|ERV1	59080	NM_001188	578	Hs.485139	NM_001188	HPRD:02744	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
19-PTNLD28-TUMOR_peak_99859	chr8	103598115	103598283	+	12.80443	NA	Intergenic	Intergenic	34351	NM_024410	4956	Hs.159274	NM_024410	HPRD:01687	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
19-PTNLD28-TUMOR_peak_90878	chr7	2077647	2077778	+	12.80443	NA	intron (NM_001013836, intron 12 of 18)	Tigger1|DNA|TcMar-Tigger	-193823	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	ncRNA
19-PTNLD28-TUMOR_peak_24568	chr12	54776977	54777189	+	12.80443	NA	intron (NM_001290004, intron 3 of 8)	L2|LINE|L2	1431	NM_001290001	25946	Hs.505653	NM_015481	HPRD:16448	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
19-PTNLD28-TUMOR_peak_24269	chr12	52217778	52217954	+	12.80422	NA	intron (NM_001013690, intron 1 of 1)	intron (NM_001013690, intron 1 of 1)	7835	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_37978	chr16	56666027	56666239	+	12.80422	NA	promoter-TSS (NM_176870)	promoter-TSS (NM_176870)	-401	NM_176870	4499	Hs.647370	NM_176870		MT1M	MT-1M|MT-IM|MT1|MT1K	metallothionein 1M	protein-coding
19-PTNLD28-TUMOR_peak_96077	chr7	143518586	143518831	+	12.80369	NA	intron (NR_015421, intron 2 of 2)	LTR19B|LTR|ERV1	11625	NR_110549	653691	Hs.632030	NR_110549		FAM115D	FAM139B	family with sequence similarity 139, member B	pseudo
19-PTNLD28-TUMOR_peak_25975	chr12	105711746	105711992	+	12.80369	NA	Intergenic	Intergenic	-12545	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_94842	chr7	111202042	111202232	+	12.80369	NA	5' UTR (NM_032549, exon 1 of 6)	5' UTR (NM_032549, exon 1 of 6)	210	NM_032549	83943	Hs.655722	NM_032549	HPRD:07297	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_107815	chrX	23808111	23808317	+	12.80369	NA	Intergenic	Intergenic	6939	NR_027783	6303	Hs.28491	NM_002970	HPRD:02431	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_51908	chr2	29740904	29741044	+	12.80369	NA	intron (NM_004304, intron 4 of 28)	intron (NM_004304, intron 4 of 28)	402682	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_9714	chr1	206306063	206306235	+	12.80254	NA	Intergenic	Intergenic	-11310	NM_001910	1510	Hs.644082	NM_001910	HPRD:00294	CTSE	CATE	cathepsin E	protein-coding
19-PTNLD28-TUMOR_peak_29129	chr13	113506039	113506226	+	12.80254	NA	intron (NM_032189, intron 18 of 28)	AluJr|SINE|Alu	-97087	NR_046661	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21568	chr11	119186541	119186743	+	12.80254	NA	intron (NM_006500, intron 1 of 15)	intron (NM_006500, intron 1 of 15)	1198	NM_006500	4162	Hs.599039	NM_006500	HPRD:01120	MCAM	CD146|MUC18	melanoma cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_55547	chr2	128051454	128051942	+	12.80254	NA	promoter-TSS (NM_000122)	promoter-TSS (NM_000122)	54	NM_000122	2071	Hs.469872	NM_000122	HPRD:00593	ERCC3	BTF2|GTF2H|RAD25|TFIIH|XPB	excision repair cross-complementation group 3	protein-coding
19-PTNLD28-TUMOR_peak_9629	chr1	205419631	205419932	+	12.80197	NA	intron (NR_103783, intron 1 of 1)	intron (NR_103783, intron 1 of 1)	-2255	NR_029893	442891		NR_029893	miRBase:MI0000810	MIR135B	MIRN135B	microRNA 135b	ncRNA
19-PTNLD28-TUMOR_peak_42758	chr17	60342506	60342836	+	12.80078	NA	non-coding (NR_027486, exon 14 of 14)	non-coding (NR_027486, exon 14 of 14)	10345	NR_027486	440452	Hs.448884	NR_027486	ENSG00000188755	TBC1D3P2	-	TBC1 domain family, member 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_77651	chr4	153701759	153701916	+	12.79975	NA	promoter-TSS (NM_145720)	promoter-TSS (NM_145720)	748	NM_014447	27236	Hs.416089	NM_014447	HPRD:09331	ARFIP1	HSU52521	ADP-ribosylation factor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_90530	chr6	167679602	167680197	+	12.78545	NA	Intergenic	Intergenic	-24904	NM_001143947	54346	Hs.567508	NM_018974	HPRD:12148	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_21926	chr11	125997899	125998099	+	12.78313	NA	Intergenic	Intergenic	-64812	NM_001243597	50937	Hs.38034	NM_016952	HPRD:16372	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_89869	chr6	148513554	148513723	+	12.78313	NA	Intergenic	Intergenic	-150091	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63896	chr21	45230763	45230929	+	12.77844	NA	non-coding (NR_026961, exon 1 of 2)	non-coding (NR_026961, exon 1 of 2)	1602	NR_026961	284837	Hs.592159	NM_194310	HPRD:11256	LOC284837	-	uncharacterized LOC284837	ncRNA
19-PTNLD28-TUMOR_peak_39767	chr17	3798189	3798436	+	12.77299	NA	Intergenic	MIRb|SINE|MIR	-1975	NM_032294	84254	Hs.8417	NM_032294	HPRD:13000	CAMKK1	CAMKKA	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_18662	chr11	57366923	57367157	+	12.77299	NA	intron (NM_001032295, intron 1 of 6)	intron (NM_001032295, intron 1 of 6)	1335	NM_001032295	710	Hs.384598	NM_000062	HPRD:06033	SERPING1	C1IN|C1INH|C1NH|HAE1|HAE2	serpin peptidase inhibitor, clade G (C1 inhibitor), member 1	protein-coding
19-PTNLD28-TUMOR_peak_1579	chr1	25160964	25161291	+	12.77299	NA	intron (NM_013943, intron 4 of 5)	SVA_E|Other|Other	84780	NR_106789	102465437		NR_106789		MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
19-PTNLD28-TUMOR_peak_47761	chr19	15926249	15926432	+	12.77299	NA	Intergenic	Intergenic	-7404	NM_013940	26539	Hs.533925	NM_013940	HPRD:17667	OR10H1	-	olfactory receptor, family 10, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_104798	chr9	98981646	98982138	+	12.77299	NA	Intergenic	CpG	82542	NM_000197	3293	Hs.477	NM_000197	HPRD:05716	HSD17B3	EDH17B3|SDR12C2	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding
19-PTNLD28-TUMOR_peak_98502	chr8	42751259	42751833	+	12.77299	NA	promoter-TSS (NM_032410)	promoter-TSS (NM_032410)	-128	NR_039679	100616115		NR_039679	miRBase:MI0016820	MIR4469	-	microRNA 4469	ncRNA
19-PTNLD28-TUMOR_peak_43347	chr17	72838914	72839281	+	12.77299	NA	exon (NM_000835, exon 13 of 13)	exon (NM_000835, exon 13 of 13)	16910	NR_103735	2905	Hs.436980	NM_000835	HPRD:00699	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, N-methyl D-aspartate 2C	protein-coding
19-PTNLD28-TUMOR_peak_68278	chr3	51573524	51573864	+	12.77299	NA	Intergenic	Intergenic	-1902	NM_015106	23132	Hs.105399	NM_015106	HPRD:10018	RAD54L2	ARIP4|HSPC325|SRISNF2L	RAD54-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_43757	chr17	76395832	76395994	+	12.77062	NA	intron (NR_111989, intron 4 of 8)	MIRb|SINE|MIR	21214	NM_024419	9489	Hs.654671	NM_024419	HPRD:17841	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_12570	chr10	27531936	27532263	+	12.76945	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-1031	NM_001301253	91452	Hs.530597	NM_145698	HPRD:12415	ACBD5	-	acyl-CoA binding domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_66807	chr3	14290269	14290557	+	12.76839	NA	Intergenic	L2b|LINE|L2	70185	NM_014463	27258	Hs.111632	NM_014463		LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_51979	chr2	31094400	31094617	+	12.76839	NA	Intergenic	Eulor2B|DNA?|DNA?	-64197	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_5509	chr1	111323444	111323698	+	12.76450	NA	Intergenic	Intergenic	-90250	NM_001040033	963	Hs.443057	NM_000560	HPRD:01054	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
19-PTNLD28-TUMOR_peak_84175	chr5	174891722	174892045	+	12.76450	NA	Intergenic	Intergenic	-13631	NM_022754	94081	Hs.369440	NM_022754	HPRD:18044	SFXN1	-	sideroflexin 1	protein-coding
19-PTNLD28-TUMOR_peak_101437	chr8	142069382	142069542	+	12.76450	NA	Intergenic	Intergenic	-58050	NM_001199649	5747	Hs.395482	NM_005607	HPRD:02859	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_35472	chr15	100538846	100539321	+	12.76450	NA	intron (NM_139057, intron 18 of 21)	intron (NM_139057, intron 18 of 21)	-191951	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_44566	chr18	10660571	10660845	+	12.76450	NA	Intergenic	Intergenic	-1222	NR_110777	101927410	Hs.436902	NR_110777	ENSG00000260779	LOC101927410	-	uncharacterized LOC101927410	ncRNA
19-PTNLD28-TUMOR_peak_70196	chr3	122817806	122818092	+	12.76450	NA	intron (NR_028444, intron 3 of 15)	intron (NR_028444, intron 3 of 15)	32093	NR_028444	10954	Hs.477352	NM_006810	HPRD:08334	PDIA5	PDIR	protein disulfide isomerase family A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_32014	chr14	100095243	100095415	+	12.76450	NA	Intergenic	Intergenic	-16151	NM_032425	84439	Hs.288522	NM_032425	HPRD:13895	HHIPL1	KIAA1822|UNQ9245	HHIP-like 1	protein-coding
19-PTNLD28-TUMOR_peak_39550	chr17	65744	66022	+	12.76450	NA	intron (NM_001190411, intron 7 of 8)	intron (NM_001190411, intron 7 of 8)	-28841	NR_104420	100506371		NR_104420		LOC100506371	-	uncharacterized LOC100506371	ncRNA
19-PTNLD28-TUMOR_peak_2462	chr1	37103983	37104181	+	12.76450	NA	Intergenic	Intergenic	-155167	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_26872	chr12	123344928	123345081	+	12.76353	NA	exon (NM_003959, exon 27 of 32)	exon (NM_003959, exon 27 of 32)	24965	NM_003959	9026	Hs.524815	NM_003959	HPRD:10412	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
19-PTNLD28-TUMOR_peak_50759	chr2	864830	865036	+	12.76353	NA	promoter-TSS (NR_033880)	promoter-TSS (NR_033880)	-821	NR_111963	339822	Hs.651879	NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
19-PTNLD28-TUMOR_peak_47750	chr19	15783304	15783619	+	12.76353	NA	promoter-TSS (NM_023944)	promoter-TSS (NM_023944)	-367	NR_117085	66002	Hs.131459	NM_023944	HPRD:07102	CYP4F12	CYPIVF12|F22329_1	cytochrome P450, family 4, subfamily F, polypeptide 12	protein-coding
19-PTNLD28-TUMOR_peak_9684	chr1	205911973	205912131	+	12.76353	NA	intron (NM_134325, intron 1 of 21)	intron (NM_134325, intron 1 of 21)	536	NM_134325	115019	Hs.164073	NM_052934	HPRD:12242	SLC26A9	-	solute carrier family 26 (anion exchanger), member 9	protein-coding
19-PTNLD28-TUMOR_peak_26974	chr12	124990931	124991285	+	12.76353	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	60902	NM_006312	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_92691	chr7	56132702	56133009	+	12.76353	NA	intron (NM_001146333, intron 1 of 7)	AluYf4|SINE|Alu	938	NM_001042469	25870	Hs.279696	NM_015411	HPRD:06400	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
19-PTNLD28-TUMOR_peak_28698	chr13	95024837	95025048	+	12.76152	NA	intron (NM_005708, intron 6 of 8)	L1PA3|LINE|L1	106994	NM_001922	1638	Hs.301865	NM_001922	HPRD:01864	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
19-PTNLD28-TUMOR_peak_36869	chr16	23814952	23815068	+	12.76152	NA	Intergenic	Intergenic	-32290	NM_002738	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_48357	chr19	28663037	28663174	+	12.76152	NA	Intergenic	Intergenic	-378257	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
19-PTNLD28-TUMOR_peak_94053	chr7	95798803	95799023	+	12.76152	NA	intron (NR_027662, intron 12 of 16)	intron (NR_027662, intron 12 of 16)	50155	NR_030322	693176		NR_030322		MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
19-PTNLD28-TUMOR_peak_60133	chr20	21304360	21304562	+	12.76152	NA	intron (NM_012255, intron 1 of 29)	MER58A|DNA|hAT-Charlie	20519	NM_012255	22803	Hs.255932	NM_012255	HPRD:10309	XRN2	-	5'-3' exoribonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_58971	chr2	235595203	235595371	+	12.76152	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-189590	NM_001282431	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_97535	chr8	21911640	21911814	+	12.76152	NA	promoter-TSS (NM_001114139)	promoter-TSS (NM_001114139)	-601	NM_001114139	2039	Hs.106124	NM_001978	HPRD:00506	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
19-PTNLD28-TUMOR_peak_12540	chr10	26774202	26774371	+	12.76152	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	47020	NM_019043	54518	Hs.310421	NM_019043	HPRD:16420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_7724	chr1	161708484	161708758	+	12.76152	NA	Intergenic	L3|LINE|CR1	-10960	NM_007240	11266	Hs.416216	NM_007240	HPRD:05323	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
19-PTNLD28-TUMOR_peak_104211	chr9	86854346	86854494	+	12.76152	NA	Intergenic	Intergenic	101274	NM_001199633	64078	Hs.535966	NM_022127	HPRD:12200	SLC28A3	CNT3	solute carrier family 28 (concentrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_40580	chr17	19648276	19648435	+	12.76152	NA	exon (NM_000691, exon 2 of 11)	exon (NM_000691, exon 2 of 11)	417	NM_001135168	218	Hs.531682	NM_000691	HPRD:00004	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_95916	chr7	141701387	141701563	+	12.76152	NA	intron (NM_004668, intron 1 of 47)	intron (NM_004668, intron 1 of 47)	5796	NM_004668	8972	Hs.122785	NM_004668	HPRD:01104	MGAM	MG|MGA	maltase-glucoamylase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_25212	chr12	70033193	70033437	+	12.76152	NA	Intergenic	Intergenic	-28373	NM_201550	376132	Hs.448708	NM_201550	HPRD:17449	LRRC10	HRLRRP|LRRC10A	leucine rich repeat containing 10	protein-coding
19-PTNLD28-TUMOR_peak_88418	chr6	77559120	77559645	+	12.76152	NA	Intergenic	L1PA7|LINE|L1	613738	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_108097	chrX	45366229	45366551	+	12.76152	NA	intron (NR_104644, intron 1 of 3)	intron (NR_104644, intron 1 of 3)	1757	NR_104644	101927528	Hs.550772	NR_104644	ENSG00000229563	LINC01204	-	long intergenic non-protein coding RNA 1204	ncRNA
19-PTNLD28-TUMOR_peak_48295	chr19	23882089	23882478	+	12.76152	NA	Intergenic	L1PA15|LINE|L1	-12266	NM_138330	171392	Hs.264345	NM_138330	HPRD:18193	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
19-PTNLD28-TUMOR_peak_25494	chr12	86230059	86230520	+	12.76152	NA	promoter-TSS (NM_005447)	promoter-TSS (NM_005447)	29	NM_005447	9182	Hs.527881	NM_005447	HPRD:08826	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
19-PTNLD28-TUMOR_peak_77765	chr4	156417523	156417688	+	12.76152	NA	Intergenic	L2|LINE|L2	-119483	NM_001039580	79884	Hs.61271	NM_001039580	HPRD:07957	MAP9	ASAP	microtubule-associated protein 9	protein-coding
19-PTNLD28-TUMOR_peak_40327	chr17	16373659	16373920	+	12.76152	NA	non-coding (NR_027177, exon 7 of 7)	non-coding (NR_027177, exon 7 of 7)	21716	NM_001113567	388341	Hs.25425	NM_207387	HPRD:16939	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
19-PTNLD28-TUMOR_peak_55996	chr2	138247552	138247742	+	12.76152	NA	intron (NM_001080427, intron 14 of 26)	intron (NM_001080427, intron 14 of 26)	437855	NR_120402	101928273	Hs.560928	NR_120402	ENSG00000234007	LOC101928273	-	uncharacterized LOC101928273	ncRNA
19-PTNLD28-TUMOR_peak_80724	chr5	74161731	74162102	+	12.75841	NA	intron (NM_015566, intron 1 of 12)	CpG	296	NR_046462	26049	Hs.91662	NM_015566	ENSG00000198780	FAM169A	SLAP75	family with sequence similarity 169, member A	protein-coding
19-PTNLD28-TUMOR_peak_43217	chr17	70452222	70452454	+	12.75841	NA	intron (NR_036488, intron 1 of 3)	MIRc|SINE|MIR	136605	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_41013	chr17	31620273	31620469	+	12.75841	NA	promoter-TSS (NM_183377)	promoter-TSS (NM_183377)	-365	NM_183377	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_59573	chr20	3767380	3767645	+	12.75841	NA	promoter-TSS (NM_001287517)	promoter-TSS (NM_001287517)	93	NM_001287516	994	Hs.153752	NM_004358	HPRD:00307	CDC25B	-	cell division cycle 25B	protein-coding
19-PTNLD28-TUMOR_peak_1005	chr1	16005159	16005388	+	12.75305	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-5554	NM_015164	23207	Hs.646775	NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding
19-PTNLD28-TUMOR_peak_101623	chr8	144461934	144462092	+	12.75018	NA	exon (NM_052924, exon 9 of 15)	exon (NM_052924, exon 9 of 15)	10988	NM_052924	114822	Hs.521912	NM_052924	HPRD:17973	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin, Rho GTPase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2871	chr1	42136286	42136404	+	12.74649	NA	intron (NM_001127714, intron 1 of 7)	L2a|LINE|L2	-186001	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_85963	chr6	24431390	24431523	+	12.74624	NA	intron (NM_001503, intron 24 of 24)	intron (NM_001503, intron 24 of 24)	28320	NR_104423	57380	Hs.658612	NM_020662	HPRD:17603	MRS2	HPT|MRS2L	MRS2 magnesium transporter	protein-coding
19-PTNLD28-TUMOR_peak_95907	chr7	141580428	141580684	+	12.74624	NA	Intergenic	L1P4a|LINE|L1	-38120	NM_001001656	130075	Hs.690171	NM_001001656	HPRD:17797	OR9A4	-	olfactory receptor, family 9, subfamily A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_85163	chr6	7432007	7432265	+	12.74624	NA	Intergenic	Intergenic	29256	NM_153005	83732	Hs.437474	NM_031480	HPRD:17978	RIOK1	AD034|RRP10|bA288G3.1	RIO kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_72017	chr3	158507494	158507621	+	12.74624	NA	Intergenic	Intergenic	-12158	NR_110328	64747	Hs.58663	NM_022736	HPRD:07851	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63638	chr21	42441024	42441204	+	12.74624	NA	Intergenic	Intergenic	78877	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_54372	chr2	98307734	98307981	+	12.74624	NA	intron (NR_038386, intron 7 of 9)	intron (NR_038386, intron 7 of 9)	21651	NR_038386	728537	Hs.469369	NR_038386	ENSG00000228486	LINC01125	-	long intergenic non-protein coding RNA 1125	ncRNA
19-PTNLD28-TUMOR_peak_53353	chr2	70494700	70494900	+	12.74624	NA	intron (NM_016297, intron 3 of 5)	SVA_B|Other|Other	9569	NM_016297	51449	Hs.567502	NM_016297	HPRD:11422	PCYOX1	PCL1	prenylcysteine oxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_100168	chr8	116463918	116464189	+	12.74624	NA	intron (NM_001282902, intron 4 of 5)	intron (NM_001282902, intron 4 of 5)	216186	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_73266	chr3	192284640	192284791	+	12.74624	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	-157877	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_12350	chr10	22566784	22566905	+	12.74624	NA	Intergenic	Intergenic	25843	NR_038921	100130992	Hs.48501	NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
19-PTNLD28-TUMOR_peak_27493	chr13	24824932	24825051	+	12.74624	NA	intron (NM_001286792, intron 5 of 14)	intron (NM_001286792, intron 5 of 14)	3586	NR_046531	100874231	Hs.577998	NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46710	chr19	3176214	3176327	+	12.74624	NA	Intergenic	LTR3B_|LTR|ERVK	-2466	NM_003775	8698	Hs.662006	NM_003775	HPRD:04779	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_3761	chr1	57263722	57263973	+	12.74624	NA	intron (NM_001004303, intron 1 of 19)	intron (NM_001004303, intron 1 of 19)	21522	NM_001004303	199920	Hs.437655	NM_001004303	HPRD:14120	C1orf168	-	chromosome 1 open reading frame 168	protein-coding
19-PTNLD28-TUMOR_peak_8715	chr1	183005180	183005367	+	12.74624	NA	intron (NM_002293, intron 1 of 27)	AluSx1|SINE|Alu	12678	NM_002293	3915	Hs.609663	NM_002293	HPRD:01030	LAMC1	LAMB2	laminin, gamma 1 (formerly LAMB2)	protein-coding
19-PTNLD28-TUMOR_peak_102828	chr9	35001824	35002032	+	12.74251	NA	Intergenic	Intergenic	11661	NM_001135005	25822	Hs.237506	NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ (Hsp40) homolog, subfamily B, member 5	protein-coding
19-PTNLD28-TUMOR_peak_37965	chr16	56486106	56486300	+	12.74204	NA	promoter-TSS (NM_007006)	promoter-TSS (NM_007006)	779	NM_018233	55239	Hs.231883	NM_018233		OGFOD1	TPA1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69624	chr3	107855644	107856233	+	12.74204	NA	non-coding (NR_110028, exon 3 of 3)	non-coding (NR_110028, exon 3 of 3)	11270	NR_110028	101929623	Hs.570653	NR_110028		LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
19-PTNLD28-TUMOR_peak_90830	chr7	1494978	1495297	+	12.74193	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	3972	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_87637	chr6	43961660	43962133	+	12.73331	NA	Intergenic	Intergenic	-6441	NM_001171992	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_99383	chr8	86132349	86132480	+	12.73293	NA	intron (NR_120681, intron 1 of 3)	intron (NR_120681, intron 1 of 3)	237	NM_001099671	401466	Hs.443072	NM_001099670	ENSG00000176731	C8orf59	-	chromosome 8 open reading frame 59	protein-coding
19-PTNLD28-TUMOR_peak_50362	chr19	55857071	55857400	+	12.73293	NA	intron (NM_032701, intron 6 of 8)	intron (NM_032701, intron 6 of 8)	6014	NM_032701	84787	Hs.590982	NM_032701	HPRD:15454	SUV420H2	KMT5C	suppressor of variegation 4-20 homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_31010	chr14	69510406	69510545	+	12.73293	NA	Intergenic	Intergenic	64076	NR_073422	161159	Hs.603341	NR_073422	ENSG00000259062	ACTN1-AS1	C14orf84	ACTN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34130	chr15	67470987	67471250	+	12.73129	NA	intron (NM_005902, intron 5 of 8)	intron (NM_005902, intron 5 of 8)	12625	NM_001145104	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_63787	chr21	44094600	44094766	+	12.73129	NA	intron (NM_001001575, intron 1 of 14)	intron (NM_001001575, intron 1 of 14)	20821	NM_001001572	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_20079	chr11	75201722	75201891	+	12.73129	NA	intron (NM_030792, intron 1 of 16)	intron (NM_030792, intron 1 of 16)	34793	NM_030792	81544	Hs.503297	NM_030792	HPRD:15159	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_63791	chr21	44153452	44153594	+	12.73129	NA	exon (NM_002606, exon 7 of 20)	exon (NM_002606, exon 7 of 20)	79661	NM_001001572	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_45985	chr18	56875729	56876183	+	12.73129	NA	Intergenic	Intergenic	-11444	NM_001012513	2922	Hs.153444	NM_002091	HPRD:08845	GRP	BN|GRP-10|preproGRP|proGRP	gastrin-releasing peptide	protein-coding
19-PTNLD28-TUMOR_peak_109970	chrX	153625918	153626124	+	12.73021	NA	promoter-TSS (NM_006013)	promoter-TSS (NM_006013)	-550	NM_001256580	6134	Hs.534404	NM_006013	HPRD:02421	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding
19-PTNLD28-TUMOR_peak_7232	chr1	155829755	155829921	+	12.72808	NA	promoter-TSS (NM_001282856)	promoter-TSS (NM_001282856)	578	NM_152280	23208	Hs.32984	NM_152280	HPRD:12289	SYT11	SYT12|sytXI	synaptotagmin XI	protein-coding
19-PTNLD28-TUMOR_peak_47	chr1	620086	620199	+	12.72507	NA	TTS (NM_001005277).2	TTS (NM_001005277).2	1892	NM_001005224	26683	Hs.632360	NM_001005224	HPRD:14972	OR4F3	-	olfactory receptor, family 4, subfamily F, member 3	protein-coding
19-PTNLD28-TUMOR_peak_29577	chr14	24711029	24711214	+	12.72173	NA	exon (NM_012461, exon 2 of 6)	exon (NM_012461, exon 2 of 6)	759	NM_001099274	26277	Hs.496191	NM_012461	HPRD:16056	TINF2	DKCA3|TIN2	TERF1 (TRF1)-interacting nuclear factor 2	protein-coding
19-PTNLD28-TUMOR_peak_48110	chr19	18943492	18943789	+	12.71707	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	896	NM_002911	5976	Hs.515266	NM_002911	HPRD:03254	UPF1	HUPF1|NORF1|RENT1|pNORF1|smg-2	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_70194	chr3	122808849	122809076	+	12.71707	NA	intron (NR_028444, intron 2 of 15)	intron (NR_028444, intron 2 of 15)	23106	NR_028444	10954	Hs.477352	NM_006810	HPRD:08334	PDIA5	PDIR	protein disulfide isomerase family A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_64025	chr21	46557129	46557237	+	12.71707	NA	intron (NR_027673, intron 3 of 12)	intron (NR_027673, intron 3 of 12)	62690	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_84812	chr6	2766031	2766365	+	12.71640	NA	exon (NM_020135, exon 1 of 7)	exon (NM_020135, exon 1 of 7)	532	NM_130395	56897	Hs.236828	NM_020135	HPRD:10494	WRNIP1	WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_35782	chr16	2203622	2203809	+	12.71640	NA	3' UTR (NM_014353, exon 9 of 9)	3' UTR (NM_014353, exon 9 of 9)	1391	NR_002736	26788		NR_002736	ENSG00000206630	SNORD60	RNU60|U60	small nucleolar RNA, C/D box 60	snoRNA
19-PTNLD28-TUMOR_peak_10780	chr1	230427771	230427997	+	12.71350	NA	Intergenic	Intergenic	133790	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_64924	chr22	28122609	28123307	+	12.71350	NA	Intergenic	Intergenic	74528	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_32637	chr15	25936457	25936737	+	12.71350	NA	intron (NM_024490, intron 15 of 20)	intron (NM_024490, intron 15 of 20)	157375	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	ncRNA
19-PTNLD28-TUMOR_peak_48771	chr19	36661730	36661851	+	12.71350	NA	Intergenic	Intergenic	-18019	NM_001864	1346	Hs.421621	NM_001864	HPRD:00481	COX7A1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_65553	chr22	39540454	39540737	+	12.71350	NA	intron (NM_175709, intron 2 of 5)	intron (NM_175709, intron 2 of 5)	7943	NM_175709	23492	Hs.356416	NM_175709	HPRD:12234	CBX7	-	chromobox homolog 7	protein-coding
19-PTNLD28-TUMOR_peak_107521	chrX	9983047	9983316	+	12.71350	NA	promoter-TSS (NM_015691)	promoter-TSS (NM_015691)	-614	NM_015691	55841	Hs.527524	NM_015691	HPRD:11136	WWC3	BM042	WWC family member 3	protein-coding
19-PTNLD28-TUMOR_peak_91538	chr7	21804903	21805200	+	12.71350	NA	exon (NM_001277115, exon 55 of 82)	exon (NM_001277115, exon 55 of 82)	180491	NM_018719	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_10424	chr1	225648521	225648642	+	12.71350	NA	Intergenic	Intergenic	-32024	NM_194442	3930	Hs.435166	NM_002296	HPRD:02488	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_97126	chr8	10651294	10651502	+	12.71350	NA	intron (NM_001284356, intron 5 of 5)	intron (NM_001284356, intron 5 of 5)	31555	NR_031711	100302166		NR_031711		MIR1322	MIRN1322|hsa-mir-1322	microRNA 1322	ncRNA
19-PTNLD28-TUMOR_peak_14343	chr10	75576903	75577115	+	12.71350	NA	intron (NM_172171, intron 18 of 20)	intron (NM_172171, intron 18 of 20)	-5420	NM_003635	8509	Hs.654758	NM_003635	HPRD:04465	NDST2	HSST2|NST2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding
19-PTNLD28-TUMOR_peak_19610	chr11	68625083	68625232	+	12.71350	NA	Intergenic	L1MC4a|LINE|L1	-15758	NM_001031847	1374	Hs.503043	NM_001876	HPRD:02755	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
19-PTNLD28-TUMOR_peak_97671	chr8	23267624	23268269	+	12.71350	NA	Intergenic	Intergenic	-6224	NM_002318	4017	Hs.626637	NM_002318	HPRD:09446	LOXL2	LOR2|WS9-14	lysyl oxidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_26883	chr12	123404728	123404895	+	12.71308	NA	TTS (NM_001243014)	TTS (NM_001243014)	-24099	NM_024667	79720	Hs.507162	NM_024667	HPRD:07794	VPS37B	-	vacuolar protein sorting 37 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_72714	chr3	183415385	183415978	+	12.71308	NA	promoter-TSS (NM_018023)	promoter-TSS (NM_018023)	75	NM_018023	55689	Hs.632575	NM_018023	HPRD:07652	YEATS2	-	YEATS domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46928	chr19	6736530	6736785	+	12.71270	NA	TTS (NR_106849)	TTS (NR_106849)	132	NR_106849	102465474		NR_106849		MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
19-PTNLD28-TUMOR_peak_61522	chr20	46121991	46122093	+	12.71230	NA	Intergenic	Intergenic	-8559	NM_001174087	8202	Hs.592142	NM_006534	HPRD:03570	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_32849	chr15	31308748	31309136	+	12.71230	NA	intron (NM_001252024, intron 27 of 27)	intron (NM_001252024, intron 27 of 27)	-25135	NM_017762	54893	Hs.30141	NM_017762	HPRD:07895	MTMR10	-	myotubularin related protein 10	protein-coding
19-PTNLD28-TUMOR_peak_86443	chr6	30098716	30099048	+	12.71230	NA	Intergenic	Intergenic	-5003	NM_001286633	135644	Hs.509439	NM_138700	HPRD:15557	TRIM40	RNF35	tripartite motif containing 40	protein-coding
19-PTNLD28-TUMOR_peak_45009	chr18	24236961	24237140	+	12.71230	NA	intron (NM_001258222, intron 1 of 4)	CpG	315	NM_001258222	284252	Hs.526630	NM_198991	HPRD:11059	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_84278	chr5	176538892	176539101	+	12.71230	NA	Intergenic	Intergenic	-21084	NM_172349	64324	Hs.106861	NM_022455	HPRD:09455	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21106	chr11	111287775	111288203	+	12.71230	NA	non-coding (NR_046085, exon 1 of 4)	non-coding (NR_046085, exon 1 of 4)	922	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
19-PTNLD28-TUMOR_peak_1937	chr1	30161377	30161666	+	12.71230	NA	Intergenic	L1MCc|LINE|L1	348938	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_29717	chr14	31528861	31528993	+	12.71230	NA	intron (NM_001254728, intron 1 of 5)	intron (NM_001254728, intron 1 of 5)	33078	NM_001254728	11154	Hs.293411	NM_007077	HPRD:06257	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor-related protein complex 4, sigma 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_213	chr1	2182126	2182329	+	12.71230	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	22093	NM_003036	6497	Hs.656507	NM_003036	HPRD:01271	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_46352	chr18	74918747	74918902	+	12.71230	NA	Intergenic	Intergenic	-43184	NM_001480	2587	Hs.272191	NM_001480		GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_83364	chr5	153651105	153651499	+	12.71230	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	81007	NM_198321	55568	Hs.631797	NM_017540	HPRD:12157	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_4917	chr1	93914307	93914472	+	12.71183	NA	intron (NM_001024948, intron 1 of 13)	CpG	701	NM_001024948	54874	Hs.134060	NM_017737	HPRD:12317	FNBP1L	C1orf39|TOCA1	formin binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_26473	chr12	116933180	116933363	+	12.71183	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-37956	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
19-PTNLD28-TUMOR_peak_95415	chr7	131934562	131934688	+	12.71183	NA	intron (NM_020911, intron 4 of 31)	intron (NM_020911, intron 4 of 31)	326698	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_85086	chr6	6677232	6677369	+	12.71163	NA	Intergenic	Intergenic	-54241	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31071	chr14	70183253	70183576	+	12.70811	NA	Intergenic	Intergenic	-50415	NM_001039465	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine/arginine-rich splicing factor 5	protein-coding
19-PTNLD28-TUMOR_peak_43386	chr17	73149496	73149607	+	12.70167	NA	promoter-TSS (NM_001288610)	promoter-TSS (NM_001288610)	-163	NM_001288610	51155	Hs.532803	NM_016185	HPRD:13665	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_10602	chr1	228248615	228248736	+	12.69788	NA	3' UTR (NM_033131, exon 4 of 4)	3' UTR (NM_033131, exon 4 of 4)	-21686	NM_001658	375	Hs.286221	NM_001658	HPRD:00054	ARF1	-	ADP-ribosylation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_14068	chr10	71560967	71561106	+	12.69735	NA	promoter-TSS (NM_001130103)	promoter-TSS (NM_001130103)	-608	NM_080802	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_9769	chr1	206807778	206807884	+	12.69735	NA	Intergenic	Intergenic	-1050	NM_003582	8444	Hs.164267	NM_003582	HPRD:04607	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_57652	chr2	198243275	198243785	+	12.69695	NA	Intergenic	Intergenic	56241	NM_001005526	23451	Hs.632554	NM_012433	HPRD:09281	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b, subunit 1, 155kDa	protein-coding
19-PTNLD28-TUMOR_peak_45359	chr18	39878843	39878977	+	12.69695	NA	intron (NR_046457, intron 4 of 6)	intron (NR_046457, intron 4 of 6)	112277	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_58589	chr2	223702440	223702749	+	12.69695	NA	Intergenic	L2c|LINE|L2	-23138	NM_004457	2181	Hs.655772	NM_004457		ACSL3	ACS3|FACL3|PRO2194	acyl-CoA synthetase long-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_28369	chr13	57713652	57713823	+	12.69695	NA	Intergenic	L1MC3|LINE|L1	-1315	NM_001130404	729233	Hs.723090	NM_001130404	ENSG00000204918	PRR20B	-	proline rich 20B	protein-coding
19-PTNLD28-TUMOR_peak_42932	chr17	63023520	63023748	+	12.69695	NA	intron (NM_006572, intron 2 of 3)	L2c|LINE|L2	28258	NM_001282425	10672	Hs.515018	NM_006572	HPRD:05100	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
19-PTNLD28-TUMOR_peak_22577	chr12	4008075	4008226	+	12.69695	NA	Intergenic	L3|LINE|CR1	-25536	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_567	chr1	9127370	9127564	+	12.69695	NA	intron (NM_003039, intron 1 of 11)	intron (NM_003039, intron 1 of 11)	2420	NM_001135585	6518	Hs.530003	NM_003039	HPRD:00690	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 (facilitated glucose/fructose transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_94374	chr7	100702730	100702848	+	12.69695	NA	TTS (NM_001040105)	TTS (NM_001040105)	-25997	NM_030961	81844	Hs.521092	NM_030961	HPRD:10284	TRIM56	RNF109	tripartite motif containing 56	protein-coding
19-PTNLD28-TUMOR_peak_4146	chr1	66673334	66673486	+	12.69695	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-124381	NM_001037339	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_92174	chr7	42711358	42711547	+	12.69695	NA	intron (NR_110833, intron 2 of 2)	L1ME3E|LINE|L1	34594	NR_110833	101928795	Hs.566753	NR_110833	ENSG00000238284	LINC01448	-	long intergenic non-protein coding RNA 1448	ncRNA
19-PTNLD28-TUMOR_peak_40960	chr17	30393986	30394120	+	12.69695	NA	Intergenic	Intergenic	26698	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_100312	chr8	119862423	119862659	+	12.69695	NA	Intergenic	Intergenic	101842	NM_002546	4982	Hs.81791	NM_002546	HPRD:04032	TNFRSF11B	OCIF|OPG|TR1	tumor necrosis factor receptor superfamily, member 11b	protein-coding
19-PTNLD28-TUMOR_peak_15465	chr10	105814218	105814486	+	12.69695	NA	intron (NM_000494, intron 20 of 55)	intron (NM_000494, intron 20 of 55)	-6408	NR_030760	100126326		NR_030760		MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
19-PTNLD28-TUMOR_peak_21805	chr11	123353874	123354039	+	12.69695	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-42388	NM_020716	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_97927	chr8	28535467	28535792	+	12.69695	NA	Intergenic	Intergenic	-23361	NR_073469	2137	Hs.491354	NM_001440	HPRD:09306	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin-like glycosyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_109635	chrX	139589541	139589685	+	12.69695	NA	Intergenic	Intergenic	-2388	NM_005634	6658	Hs.157429	NM_005634	HPRD:02432	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
19-PTNLD28-TUMOR_peak_3137	chr1	45423331	45423510	+	12.69695	NA	intron (NM_020365, intron 3 of 11)	AluSz|SINE|Alu	28974	NM_020365	8891	Hs.533549	NM_020365	HPRD:09379	EIF2B3	EIF-2B|EIF2Bgamma	eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa	protein-coding
19-PTNLD28-TUMOR_peak_44791	chr18	19262593	19262965	+	12.69695	NA	promoter-TSS (NR_031565)	promoter-TSS (NR_031565)	-692	NR_031565	100302135		NR_031565	miRBase:MI0003778	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1	microRNA 320c-1	ncRNA
19-PTNLD28-TUMOR_peak_47373	chr19	11946679	11946868	+	12.69695	NA	TTS (NM_152357)	TTS (NM_152357)	21666	NM_152357	126070	Hs.418192	NM_152357	HPRD:11718	ZNF440	-	zinc finger protein 440	protein-coding
19-PTNLD28-TUMOR_peak_94544	chr7	102254881	102255031	+	12.69352	NA	intron (NM_001079877, intron 1 of 19)	L2c|LINE|L2	2247	NM_001277335	100271927	Hs.530089	NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
19-PTNLD28-TUMOR_peak_83164	chr5	149403947	149404110	+	12.69182	NA	exon (NM_014983, exon 7 of 20)	exon (NM_014983, exon 7 of 20)	-23298	NM_030953	81789	Hs.169333	NM_030953	HPRD:18190	TIGD6	-	tigger transposable element derived 6	protein-coding
19-PTNLD28-TUMOR_peak_68329	chr3	52254578	52254757	+	12.69182	NA	TTS (NM_017442)	TTS (NM_017442)	5512	NM_017442	54106	Hs.87968	NM_017442	HPRD:05685	TLR9	CD289	toll-like receptor 9	protein-coding
19-PTNLD28-TUMOR_peak_75876	chr4	79486389	79486569	+	12.68944	NA	intron (NM_005139, intron 2 of 12)	L2b|LINE|L2	13737	NM_005139	306	Hs.480042	NM_005139	HPRD:00111	ANXA3	ANX3	annexin A3	protein-coding
19-PTNLD28-TUMOR_peak_1780	chr1	27845012	27845251	+	12.68937	NA	Intergenic	Intergenic	-28453	NM_001201404	10163	Hs.469244	NM_006990	HPRD:05796	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_100885	chr8	129548748	129548902	+	12.68937	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	28100	NR_121672	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_41388	chr17	38653940	38654266	+	12.68937	NA	intron (NM_032865, intron 1 of 12)	L2c|LINE|L2	3751	NM_032865	84951	Hs.438292	NM_032865	HPRD:12223	TNS4	CTEN	tensin 4	protein-coding
19-PTNLD28-TUMOR_peak_60511	chr20	31215533	31215738	+	12.68937	NA	Intergenic	Intergenic	24148	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding
19-PTNLD28-TUMOR_peak_5401	chr1	110182954	110183076	+	12.68937	NA	Intergenic	MER91A|DNA|hAT-Tip100	14966	NM_203404	271	Hs.82927	NM_004037	HPRD:11808	AMPD2	PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_48007	chr19	18208329	18208718	+	12.68937	NA	promoter-TSS (NM_015016)	promoter-TSS (NM_015016)	-80	NM_015016	23031	Hs.466184	NM_015016	ENSG00000099308	MAST3	-	microtubule associated serine/threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_58946	chr2	235046121	235046277	+	12.68937	NA	Intergenic	Intergenic	86853	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_99656	chr8	99176924	99177251	+	12.68933	NA	Intergenic	LTR16E2|LTR|ERVL	47019	NM_015029	10940	Hs.252828	NM_015029	HPRD:03923	POP1	-	processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_5054	chr1	95428482	95428715	+	12.68933	NA	non-coding (NR_033998, exon 4 of 4)	non-coding (NR_033998, exon 4 of 4)	35014	NR_033998	729970	Hs.297988	NR_033998	ENSG00000235501	LOC729970	-	hCG2028352-like	ncRNA
19-PTNLD28-TUMOR_peak_2913	chr1	42748620	42748806	+	12.68933	NA	intron (NM_014947, intron 2 of 12)	intron (NM_014947, intron 2 of 12)	51923	NM_001198851	22887	Hs.26023	NM_014947	HPRD:13549	FOXJ3	-	forkhead box J3	protein-coding
19-PTNLD28-TUMOR_peak_52324	chr2	42096994	42097092	+	12.68933	NA	Intergenic	Intergenic	-7652	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LOC388942	-	uncharacterized LOC388942	ncRNA
19-PTNLD28-TUMOR_peak_94084	chr7	97051564	97051697	+	12.68933	NA	Intergenic	MIR3|SINE|MIR	305725	NM_020186	57001	Hs.592269	NM_020186	HPRD:16471	ACN9	-	ACN9 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_84747	chr6	1702430	1702568	+	12.68933	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	91818	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_24522	chr12	54399854	54400004	+	12.68933	NA	Intergenic	CpG	-2961	NM_022658	3224	Hs.664500	NM_022658		HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
19-PTNLD28-TUMOR_peak_84276	chr5	176498961	176499065	+	12.68933	NA	Intergenic	Intergenic	-14860	NM_002011	2264	Hs.165950	NM_002011	HPRD:00625	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_101232	chr8	135852754	135852945	+	12.68933	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-9329	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
19-PTNLD28-TUMOR_peak_107988	chrX	40005780	40005922	+	12.68933	NA	intron (NM_001123384, intron 1 of 13)	CpG	30731	NM_001123383	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_413	chr1	6830838	6831270	+	12.68933	NA	Intergenic	Intergenic	-14330	NM_015215	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_64510	chr22	21369125	21369508	+	12.68933	NA	promoter-TSS (NM_001159554)	promoter-TSS (NM_001159554)	-126	NM_001159554	9127	Hs.113275	NM_005446		P2RX6	P2RXL1|P2X6|P2XM	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding
19-PTNLD28-TUMOR_peak_89972	chr6	150518140	150518416	+	12.68933	NA	intron (NM_030949, intron 1 of 3)	intron (NM_030949, intron 1 of 3)	54090	NM_030949	81706	Hs.486798	NM_030949	HPRD:17890	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1, regulatory (inhibitor) subunit 14C	protein-coding
19-PTNLD28-TUMOR_peak_72782	chr3	184146699	184146861	+	12.68933	NA	Intergenic	Intergenic	48919	NM_003741	8646	Hs.166186	NM_003741	HPRD:04592	CHRD	-	chordin	protein-coding
19-PTNLD28-TUMOR_peak_1707	chr1	27032360	27032571	+	12.68933	NA	intron (NM_006015, intron 1 of 19)	intron (NM_006015, intron 1 of 19)	9943	NM_139135	8289	Hs.468972	NM_006015	HPRD:04319	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT rich interactive domain 1A (SWI-like)	protein-coding
19-PTNLD28-TUMOR_peak_44871	chr18	20578433	20578567	+	12.68933	NA	intron (NM_203291, intron 14 of 18)	intron (NM_203291, intron 14 of 18)	64661	NM_203291	5932	Hs.546282	NM_002894	HPRD:04990	RBBP8	COM1|CTIP|JWDS|RIM|SAE2|SCKL2	retinoblastoma binding protein 8	protein-coding
19-PTNLD28-TUMOR_peak_71654	chr3	149526049	149526208	+	12.68863	NA	Intergenic	L1MA4A|LINE|L1	-4347	NM_007282	11342	Hs.12333	NM_007282	HPRD:11503	RNF13	RZF	ring finger protein 13	protein-coding
19-PTNLD28-TUMOR_peak_18905	chr11	61555717	61555855	+	12.68863	NA	TTS (NM_014206)	TTS (NM_014206)	4247	NR_030342	693196		NR_030342		MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
19-PTNLD28-TUMOR_peak_63946	chr21	45719538	45719828	+	12.68863	NA	promoter-TSS (NM_002626)	promoter-TSS (NM_002626)	-234	NM_002626	5211	Hs.255093	NM_002626	HPRD:01385	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver	protein-coding
19-PTNLD28-TUMOR_peak_95266	chr7	129883454	129883697	+	12.68686	NA	Intergenic	L1PA13|LINE|L1	-23128	NM_001869	1358	Hs.490038	NM_001869	HPRD:02821	CPA2	-	carboxypeptidase A2 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_35848	chr16	2819742	2819932	+	12.68686	NA	intron (NM_016333, intron 12 of 14)	L2c|LINE|L2	7460	NM_007108	6923	Hs.172772	NM_007108	HPRD:02874	TCEB2	ELOB|SIII	transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)	protein-coding
19-PTNLD28-TUMOR_peak_94364	chr7	100514019	100514177	+	12.68686	NA	Intergenic	MER41B|LTR|ERV1	-20506	NM_001282449	43	Hs.154495	NM_000665	HPRD:00010	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
19-PTNLD28-TUMOR_peak_40113	chr17	8567760	8568358	+	12.68686	NA	Intergenic	Intergenic	-33980	NM_001256012	4628	Hs.16355	NM_005964	HPRD:01178	MYH10	NMMHC-IIB|NMMHCB	myosin, heavy chain 10, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_88348	chr6	74385340	74385490	+	12.68686	NA	Intergenic	Intergenic	-20393	NM_001159587	135228	Hs.399891	NM_133493	HPRD:10590	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
19-PTNLD28-TUMOR_peak_76857	chr4	122228672	122228805	+	12.68686	NA	Intergenic	Intergenic	73443	NM_198179	84109	Hs.368977	NM_198179		QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
19-PTNLD28-TUMOR_peak_73413	chr3	194459033	194459384	+	12.68686	NA	intron (NR_037891, intron 1 of 3)	intron (NR_037891, intron 1 of 3)	30058	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	ncRNA
19-PTNLD28-TUMOR_peak_67527	chr3	37223270	37223549	+	12.68453	NA	Intergenic	AluJr|SINE|Alu	-5558	NM_001134369	9209	Hs.740522	NM_006309	HPRD:10061	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_73122	chr3	189071899	189072110	+	12.68453	NA	Intergenic	Intergenic	-113621	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_93158	chr7	72718902	72719043	+	12.68123	NA	exon (NM_001168348, exon 5 of 9)	exon (NM_001168348, exon 5 of 9)	3892	NM_018044	55695	Hs.510927	NM_018044	HPRD:11678	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120	NOP2/Sun domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_60718	chr20	34043502	34043730	+	12.68123	NA	intron (NM_007186, intron 1 of 34)	intron (NM_007186, intron 1 of 34)	393	NM_007186	11190	Hs.443976	NM_007186	HPRD:09877	CEP250	C-NAP1|CEP2|CNAP1	centrosomal protein 250kDa	protein-coding
19-PTNLD28-TUMOR_peak_98618	chr8	48266331	48266518	+	12.68123	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	92954	NM_001080394	23514	Hs.381058	NM_001080394	ENSG00000164808	SPIDR	KIAA0146	scaffolding protein involved in DNA repair	protein-coding
19-PTNLD28-TUMOR_peak_73521	chr3	195621936	195622090	+	12.67984	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	419	NM_001010938	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_33146	chr15	40395726	40395963	+	12.67642	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	2443	NM_001003942	90427	Hs.591104	NM_033503	HPRD:05881	BMF	-	Bcl2 modifying factor	protein-coding
19-PTNLD28-TUMOR_peak_81884	chr5	124748513	124748718	+	12.66796	NA	Intergenic	Intergenic	-80339	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
19-PTNLD28-TUMOR_peak_100265	chr8	118958753	118959138	+	12.66630	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	165113	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_80265	chr5	64779645	64779809	+	12.66630	NA	Intergenic	Intergenic	-2023	NM_197941	11174	Hs.482291	NM_197941	HPRD:05421	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	protein-coding
19-PTNLD28-TUMOR_peak_105655	chr9	117971912	117972028	+	12.66630	NA	intron (NM_017418, intron 1 of 7)	MIR|SINE|MIR	67873	NM_017418	50514	Hs.148841	NM_017418	HPRD:16068	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_11941	chr10	7742645	7742852	+	12.66630	NA	Intergenic	Intergenic	-2488	NM_002216	3698	Hs.75285	NM_002216	HPRD:00890	ITIH2	H2P|SHAP	inter-alpha-trypsin inhibitor heavy chain 2	protein-coding
19-PTNLD28-TUMOR_peak_65772	chr22	43113350	43113616	+	12.66630	NA	intron (NM_017436, intron 1 of 2)	intron (NM_017436, intron 1 of 2)	3393	NM_017436	53947	Hs.105956	NM_017436	HPRD:06390	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_62522	chr20	61342551	61342686	+	12.66630	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	2429	NM_002531	4923	Hs.590869	NM_002531	HPRD:01218	NTSR1	NTR	neurotensin receptor 1 (high affinity)	protein-coding
19-PTNLD28-TUMOR_peak_17046	chr11	9551994	9552122	+	12.66630	NA	Intergenic	Intergenic	-43170	NM_003390	7465	Hs.249441	NM_003390	HPRD:01907	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
19-PTNLD28-TUMOR_peak_2307	chr1	35221032	35221142	+	12.66630	NA	intron (NM_005268, intron 1 of 1)	intron (NM_005268, intron 1 of 1)	439	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_46776	chr19	4175162	4175514	+	12.66630	NA	intron (NM_001193285, intron 5 of 6)	intron (NM_001193285, intron 5 of 6)	7258	NM_001193285	51548	Hs.423756	NM_016539	HPRD:12093	SIRT6	SIR2L6	sirtuin 6	protein-coding
19-PTNLD28-TUMOR_peak_80424	chr5	68303720	68303844	+	12.66516	NA	Intergenic	Intergenic	-85994	NM_001251969	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_88459	chr6	79986952	79987081	+	12.66516	NA	Intergenic	Intergenic	-42561	NM_004242	9324	Hs.77558	NM_004242	HPRD:16062	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
19-PTNLD28-TUMOR_peak_365	chr1	6413973	6414182	+	12.66516	NA	intron (NM_007274, intron 1 of 8)	intron (NM_007274, intron 1 of 8)	4927	NM_181866	11332	Hs.126137	NM_007274	HPRD:12517	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_109633	chrX	139521754	139521911	+	12.66516	NA	Intergenic	CpG	65393	NM_005634	6658	Hs.157429	NM_005634	HPRD:02432	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
19-PTNLD28-TUMOR_peak_33299	chr15	42763844	42763994	+	12.66516	NA	intron (NM_001284307, intron 2 of 19)	AluSx|SINE|Alu	-14154	NM_001284306	64397	Hs.511143	NM_022473	HPRD:10317	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
19-PTNLD28-TUMOR_peak_56792	chr2	166731057	166731196	+	12.66516	NA	3' UTR (NM_024753, exon 29 of 29)	3' UTR (NM_024753, exon 29 of 29)	-2675	NR_045375	100506124	Hs.709870	NR_045375		LOC100506124	-	uncharacterized LOC100506124	ncRNA
19-PTNLD28-TUMOR_peak_89293	chr6	121514572	121514850	+	12.66516	NA	intron (NR_104452, intron 23 of 35)	HERVL-int|LTR|ERVL	140935	NR_104452	221322	Hs.121396	NM_152730	HPRD:12867	TBC1D32	BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	TBC1 domain family, member 32	protein-coding
19-PTNLD28-TUMOR_peak_27868	chr13	37824937	37825038	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	-145186	NM_145203	122011	Hs.512897	NM_145203	HPRD:13095	CSNK1A1L	CK1	casein kinase 1, alpha 1-like	protein-coding
19-PTNLD28-TUMOR_peak_109169	chrX	109911024	109911181	+	12.66516	NA	Intergenic	Intergenic	127974	NM_145234	91851	Hs.496587	NM_145234	HPRD:02285	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_82392	chr5	136537767	136537904	+	12.66516	NA	intron (NM_004598, intron 3 of 10)	intron (NM_004598, intron 3 of 10)	297183	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_108244	chrX	48653714	48653883	+	12.66516	NA	Intergenic	MIR|SINE|MIR	-6689	NM_006044	10013	Hs.6764	NM_006044	HPRD:02228	HDAC6	CPBHM|HD6|PPP1R90	histone deacetylase 6	protein-coding
19-PTNLD28-TUMOR_peak_88555	chr6	84222255	84222378	+	12.66516	NA	5' UTR (NM_001170423, exon 1 of 3)	5' UTR (NM_001170423, exon 1 of 3)	122	NM_001170423	167681	Hs.98381	NM_153362	HPRD:07095	PRSS35	C6orf158|dJ223E3.1	protease, serine, 35	protein-coding
19-PTNLD28-TUMOR_peak_12170	chr10	15251960	15252082	+	12.66516	NA	Intergenic	Intergenic	-41326	NM_004808	9397	Hs.60339	NM_004808		NMT2	-	N-myristoyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_53245	chr2	68224718	68224846	+	12.66516	NA	Intergenic	Intergenic	65377	NM_173177	10438	Hs.602900	NM_006333		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
19-PTNLD28-TUMOR_peak_73281	chr3	192625692	192625860	+	12.66516	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	10174	NM_178496	151963	Hs.151443	NM_178496	HPRD:14092	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_91727	chr7	26704722	26704880	+	12.66516	NA	Intergenic	Intergenic	27311	NM_001145531	285941	Hs.413394	NM_001145531	ENSG00000222004	C7orf71	-	chromosome 7 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_55896	chr2	135062395	135062554	+	12.66516	NA	intron (NM_002410, intron 2 of 15)	intron (NM_002410, intron 2 of 15)	50644	NM_002410	4249	Hs.4988	NM_002410	HPRD:03467	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_38687	chr16	73332628	73332789	+	12.66516	NA	Intergenic	Intergenic	-87996	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	ncRNA
19-PTNLD28-TUMOR_peak_7772	chr1	162583593	162583777	+	12.66516	NA	Intergenic	Intergenic	-18543	NM_006182	4921	Hs.275757	NM_006182	HPRD:01868	DDR2	MIG20a|NTRKR3|TKT|TYRO10	discoidin domain receptor tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_70587	chr3	127648805	127648961	+	12.66516	NA	intron (NM_207335, intron 2 of 4)	intron (NM_207335, intron 2 of 4)	6981	NM_207335	166348	Hs.132087	NM_207335	HPRD:17001	KBTBD12	KLHDC6	kelch repeat and BTB (POZ) domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_108023	chrX	41071482	41071582	+	12.66516	NA	intron (NM_001039591, intron 33 of 44)	SVA_D|Other|Other	-121119	NM_001356	1654	Hs.743263	NM_001356	HPRD:02154	DDX3X	DBX|DDX14|DDX3|HLP2	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_75695	chr4	75590619	75590826	+	12.66516	NA	Intergenic	Intergenic	110131	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_32320	chr14	105498799	105498940	+	12.66516	NA	Intergenic	MER41A|LTR|ERV1	-11444	NM_017955	55038	Hs.34045	NM_017955	HPRD:13015	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
19-PTNLD28-TUMOR_peak_56373	chr2	153550750	153550937	+	12.66516	NA	intron (NM_017892, intron 3 of 25)	AluJo|SINE|Alu	23132	NM_017892	55660	Hs.643580	NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_58178	chr2	211725842	211726024	+	12.66516	NA	Intergenic	Intergenic	243638	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_79272	chr5	27830709	27830880	+	12.66516	NA	Intergenic	Intergenic	358395	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
19-PTNLD28-TUMOR_peak_23223	chr12	14905076	14905214	+	12.66516	NA	Intergenic	Intergenic	18920	NM_175054	121504	Hs.745457	NM_175054	HPRD:13662	HIST4H4	H4/p	histone cluster 4, H4	protein-coding
19-PTNLD28-TUMOR_peak_56803	chr2	167909499	167909608	+	12.66516	NA	intron (NM_001079810, intron 2 of 9)	intron (NM_001079810, intron 2 of 9)	87912	NR_046665	100874011		NR_046665		XIRP2-AS1	-	XIRP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96917	chr8	6038072	6038364	+	12.66516	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	225851	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
19-PTNLD28-TUMOR_peak_31586	chr14	88596222	88596352	+	12.66516	NA	Intergenic	Intergenic	-103631	NR_110121	101928791	Hs.641889	NR_110121	ENSG00000258826	LOC101928791	-	uncharacterized LOC101928791	ncRNA
19-PTNLD28-TUMOR_peak_81466	chr5	107989850	107990053	+	12.66516	NA	Intergenic	Intergenic	74011	NR_046368	100652853	Hs.133009	NR_046368	ENSG00000272523	LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
19-PTNLD28-TUMOR_peak_104490	chr9	92446235	92446419	+	12.66516	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	191629	NR_024280	100129066	Hs.125947	NR_024280		UNQ6494	-	uncharacterized LOC100129066	ncRNA
19-PTNLD28-TUMOR_peak_75484	chr4	59644379	59644480	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-1667878	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_99510	chr8	94365268	94365422	+	12.66516	NA	intron (NR_033858, intron 10 of 10)	MER21C|LTR|ERVL	-186266	NM_001242668	389676	Hs.386711	NM_001242668	ENSG00000254318	C8orf87	-	chromosome 8 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_27537	chr13	26148711	26148819	+	12.66516	NA	intron (NM_016529, intron 18 of 36)	intron (NM_016529, intron 18 of 36)	202556	NM_016529	51761	Hs.444957	NM_016529	HPRD:05795	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase, aminophospholipid transporter, class I, type 8A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_40043	chr17	7976983	7977173	+	12.66516	NA	intron (NM_001139, intron 12 of 14)	intron (NM_001139, intron 12 of 14)	13943	NM_001139	242	Hs.136574	NM_001139	HPRD:04772	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
19-PTNLD28-TUMOR_peak_31253	chr14	74292401	74292535	+	12.66516	NA	Intergenic	Intergenic	-26066	NM_001146154	145482	Hs.632344	NM_152444	HPRD:09782	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_54745	chr2	108805885	108806032	+	12.66516	NA	Intergenic	LTR3B_|LTR|ERVK	-57693	NM_001008743	442038	Hs.535156	NM_001008743	HPRD:18131	SULT1C3	ST1C3	sulfotransferase family, cytosolic, 1C, member 3	protein-coding
19-PTNLD28-TUMOR_peak_60478	chr20	30777906	30778484	+	12.66516	NA	promoter-TSS (NR_002781)	promoter-TSS (NR_002781)	-32	NR_002781	128854	Hs.647447	NR_002781	HPRD:18235	TSPY26P	TSPYL3|bA392M18.1	testis specific protein, Y-linked 26, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_78133	chr4	178039912	178040050	+	12.66516	NA	Intergenic	Intergenic	-191010	NM_018248	55247	Hs.405467	NM_018248	HPRD:16407	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei endonuclease VIII-like 3 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_64615	chr22	22562342	22562539	+	12.66516	NA	Intergenic	Intergenic	-36760	NM_007128	7441	Hs.247979	NM_007128	HPRD:05505	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
19-PTNLD28-TUMOR_peak_99672	chr8	99829648	99829866	+	12.66516	NA	intron (NM_001256312, intron 3 of 12)	intron (NM_001256312, intron 3 of 12)	8142	NM_001256313	6788	Hs.492333	NM_006281	HPRD:05433	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_53046	chr2	64276911	64277092	+	12.66516	NA	Intergenic	Intergenic	-30787	NM_016516	51542	Hs.48499	NM_016516	HPRD:10302	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	vacuolar protein sorting 54 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_1154	chr1	17489507	17489634	+	12.66516	NA	Intergenic	Intergenic	-42051	NM_013358	29943	Hs.412941	NM_013358	HPRD:06395	PADI1	HPAD10|PAD1|PDI|PDI1	peptidyl arginine deiminase, type I	protein-coding
19-PTNLD28-TUMOR_peak_88940	chr6	106040270	106040430	+	12.66516	NA	Intergenic	Intergenic	-189351	NM_002726	5550	Hs.436564	NM_002726	HPRD:02673	PREP	PE|PEP	prolyl endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_49153	chr19	41755806	41755944	+	12.66516	NA	intron (NM_021913, intron 14 of 19)	LTR33A|LTR|ERVL	-12506	NM_144732	11100	Hs.155218	NM_007040	HPRD:10428	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4678	chr1	87366069	87366172	+	12.66516	NA	intron (NM_203341, intron 2 of 3)	SVA_D|Other|Other	13987	NM_004261	9403	Hs.362728	NM_004261	HPRD:09376	SEP15	-	15 kDa selenoprotein	protein-coding
19-PTNLD28-TUMOR_peak_30459	chr14	56188070	56188237	+	12.66516	NA	Intergenic	MIR|SINE|MIR	-44810	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_100382	chr8	121002973	121003101	+	12.66516	NA	intron (NM_001283012, intron 2 of 6)	intron (NM_001283012, intron 2 of 6)	117142	NM_022783	64798	Hs.112981	NM_022783	HPRD:13137	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_17061	chr11	9921883	9922013	+	12.66516	NA	intron (NM_030962, intron 16 of 39)	LTR10F|LTR|ERV1	61259	NR_120539	101928008	Hs.585524	NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
19-PTNLD28-TUMOR_peak_20900	chr11	103480220	103480367	+	12.66516	NA	Intergenic	LTR50|LTR|ERVL	-240341	NR_039842	100616457		NR_039842	miRBase:MI0017326	MIR4693	-	microRNA 4693	ncRNA
19-PTNLD28-TUMOR_peak_28325	chr13	53054991	53055129	+	12.66516	NA	Intergenic	Intergenic	-8068	NR_002793	220115	Hs.528448	NR_002793	ENSG00000198384	TPTE2P3	TPTEps1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_89608	chr6	137410501	137410676	+	12.66516	NA	Intergenic	LTR79|LTR|ERVL	-44271	NM_014432	53832	Hs.445868	NM_014432	HPRD:05729	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_974	chr1	15455142	15455242	+	12.66516	NA	intron (NR_027136, intron 1 of 4)	intron (NR_027136, intron 1 of 4)	23768	NR_027136	200197	Hs.531424	NM_182534		TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41980	chr17	45827870	45827970	+	12.66516	NA	Intergenic	AluY|SINE|Alu	17310	NM_013351	30009	Hs.272409	NM_013351	HPRD:05355	TBX21	T-PET|T-bet|TBET|TBLYM	T-box 21	protein-coding
19-PTNLD28-TUMOR_peak_73001	chr3	186992881	186993178	+	12.66516	NA	intron (NR_033519, intron 1 of 9)	intron (NR_033519, intron 1 of 9)	16781	NM_001879	5648	Hs.89983	NM_001879	HPRD:02749	MASP1	3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF	mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)	protein-coding
19-PTNLD28-TUMOR_peak_39792	chr17	4316609	4316783	+	12.66516	NA	Intergenic	Intergenic	-20523	NM_182538	201305	Hs.657543	NM_182538	HPRD:14531	SPNS3	-	spinster homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_17689	chr11	26318902	26319016	+	12.66516	NA	Intergenic	Intergenic	-34719	NM_031418	63982	Hs.91791	NM_031418	HPRD:15526	ANO3	C11orf25|DYT23|DYT24|TMEM16C	anoctamin 3	protein-coding
19-PTNLD28-TUMOR_peak_23235	chr12	15063146	15063285	+	12.66516	NA	Intergenic	Intergenic	18844	NM_001300784	121506	Hs.162143	NM_152321		ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
19-PTNLD28-TUMOR_peak_64948	chr22	28788266	28788395	+	12.66516	NA	intron (NM_001145418, intron 2 of 22)	L1PA3|LINE|L1	-67527	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
19-PTNLD28-TUMOR_peak_83313	chr5	151841609	151841923	+	12.66516	NA	Intergenic	LTR16B2|LTR|ERVL	-56926	NM_020167	56923	Hs.731911	NM_020167	HPRD:12003	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_107828	chrX	24263442	24263562	+	12.66516	NA	Intergenic	Intergenic	67930	NM_001136233	170067	Hs.716893	NM_001136233		SUPT20HL2	FAM48B1|FAM48B2	suppressor of Ty 20 homolog (S. cerevisiae)-like 2	protein-coding
19-PTNLD28-TUMOR_peak_12496	chr10	25325480	25325600	+	12.66516	NA	intron (NM_001270383, intron 2 of 5)	intron (NM_001270383, intron 2 of 5)	20032	NM_024838	79896	Hs.645274	NM_024838	HPRD:07974	THNSL1	TSH1	threonine synthase-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_92082	chr7	38784468	38784691	+	12.66516	NA	intron (NM_080631, intron 22 of 27)	intron (NM_080631, intron 22 of 27)	-57890	NR_028347	340286	Hs.144075	NM_001105282	ENSG00000164556	FAM183B	-	acyloxyacyl hydrolase (neutrophil)	pseudo
19-PTNLD28-TUMOR_peak_104226	chr9	87171491	87171773	+	12.66516	NA	Intergenic	Intergenic	-111741	NM_001291937	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_29801	chr14	33926228	33926414	+	12.66516	NA	intron (NM_001165893, intron 3 of 10)	intron (NM_001165893, intron 3 of 10)	493963	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_110122	chrY	2595350	2595633	+	12.66516	NA	intron (NM_002414, intron 8 of 9).2	intron (NM_002414, intron 8 of 9).2	-24846	NR_003254	100132596	Hs.179675	NR_003254		XGY2	XG|XGPY|XGPY2	Xg pseudogene, Y-linked 2	pseudo
19-PTNLD28-TUMOR_peak_30139	chr14	49261953	49262123	+	12.66516	NA	Intergenic	L1PA7|LINE|L1	791096	NM_001032	6235	Hs.156367	NM_001032	HPRD:04698	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
19-PTNLD28-TUMOR_peak_12592	chr10	28182347	28182733	+	12.66516	NA	intron (NM_001290020, intron 17 of 19)	intron (NM_001290020, intron 17 of 19)	88306	NM_001290021	55130	Hs.127530	NM_018076	HPRD:10663	ARMC4	CILD23	armadillo repeat containing 4	protein-coding
19-PTNLD28-TUMOR_peak_31822	chr14	94476231	94476435	+	12.66516	NA	intron (NR_024183, intron 8 of 10)	intron (NR_024183, intron 8 of 10)	12691	NR_024183	256369	Hs.143845	NM_152777	HPRD:12651	LINC00521	C14orf48|c14_5713	long intergenic non-protein coding RNA 521	ncRNA
19-PTNLD28-TUMOR_peak_107657	chrX	16623170	16623328	+	12.66516	NA	intron (NM_019857, intron 17 of 18)	MER68B|LTR|ERVL	-45032	NM_004057	795	Hs.639	NM_004057	HPRD:02360	S100G	CABP|CABP1|CABP9K|CALB3	S100 calcium binding protein G	protein-coding
19-PTNLD28-TUMOR_peak_28314	chr13	52778140	52778300	+	12.66516	NA	Intergenic	Intergenic	-9618	NR_002816	100887750	Hs.553878	NR_002816	ENSG00000243406	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_56455	chr2	157323718	157323860	+	12.66516	NA	intron (NM_000408, intron 1 of 16)	intron (NM_000408, intron 1 of 16)	30889	NM_000408	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_91919	chr7	32840177	32840324	+	12.66516	NA	Intergenic	LTR13|LTR|ERVK	42352	NR_036501	401321	Hs.627604	NR_036501		LINC00997	-	long intergenic non-protein coding RNA 997	ncRNA
19-PTNLD28-TUMOR_peak_12668	chr10	29912892	29913040	+	12.66516	NA	intron (NM_003174, intron 3 of 35)	Tigger3c|DNA|TcMar-Tigger	10935	NM_021738	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_52917	chr2	58798518	58798694	+	12.66516	NA	intron (NR_033873, intron 1 of 13)	intron (NR_033873, intron 1 of 13)	50718	NR_033873	400955	Hs.503210	NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA
19-PTNLD28-TUMOR_peak_98873	chr8	56941461	56941651	+	12.66516	NA	Intergenic	Intergenic	44904	NR_002437	26795		NR_002437		SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
19-PTNLD28-TUMOR_peak_110053	chrX	154797984	154798116	+	12.66516	NA	intron (NM_001184797, intron 1 of 6)	L1PA3|LINE|L1	44572	NM_018196	55217	Hs.133321	NM_018196	HPRD:06743	TMLHE	AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130	trimethyllysine hydroxylase, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_77653	chr4	153781348	153781482	+	12.66516	NA	intron (NM_001025593, intron 2 of 7)	MIRb|SINE|MIR	80326	NM_014447	27236	Hs.416089	NM_014447	HPRD:09331	ARFIP1	HSU52521	ADP-ribosylation factor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_9091	chr1	199126835	199126991	+	12.66516	NA	Intergenic	Intergenic	-138820	NR_110525	102800316	Hs.568480	NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
19-PTNLD28-TUMOR_peak_108200	chrX	47781112	47781261	+	12.66516	NA	3' UTR (NM_007137, exon 5 of 5)	3' UTR (NM_007137, exon 5 of 5)	82191	NM_006962	7569	Hs.189690	NM_006962	HPRD:11781	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
19-PTNLD28-TUMOR_peak_95199	chr7	129092858	129092970	+	12.66516	NA	intron (NM_020704, intron 4 of 20)	intron (NM_020704, intron 4 of 20)	18640	NM_020704	57464	Hs.489988	NM_020704	HPRD:16880	STRIP2	FAM40B|FAR11B	striatin interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_14307	chr10	74649256	74649501	+	12.66516	NA	Intergenic	L1MB3|LINE|L1	-3961	NM_152635	170392	Hs.8366	NM_152635	HPRD:17660	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
19-PTNLD28-TUMOR_peak_12720	chr10	30496601	30496786	+	12.66516	NA	Intergenic	Intergenic	-4088	NR_120653	101929279	Hs.559153	NR_120653		LOC101929279	-	uncharacterized LOC101929279	ncRNA
19-PTNLD28-TUMOR_peak_69419	chr3	99508291	99508451	+	12.66516	NA	intron (NM_020351, intron 2 of 3)	intron (NM_020351, intron 2 of 3)	-28307	NM_032359	84319	Hs.581320	NM_032359	HPRD:11351	CMSS1	C3orf26	cms1 ribosomal small subunit homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_9020	chr1	195561190	195561343	+	12.66516	NA	Intergenic	Intergenic	990345	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_63617	chr21	41558107	41558234	+	12.66516	NA	intron (NR_073202, intron 14 of 32)	intron (NR_073202, intron 14 of 32)	26188	NR_039917	100616148		NR_039917		MIR4760	-	microRNA 4760	ncRNA
19-PTNLD28-TUMOR_peak_53641	chr2	76868177	76868368	+	12.66516	NA	Intergenic	Intergenic	-344819	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
19-PTNLD28-TUMOR_peak_8938	chr1	187566915	187567063	+	12.66516	NA	Intergenic	L1HS|LINE|L1	768957	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_67919	chr3	46229562	46229700	+	12.66516	NA	Intergenic	Intergenic	20201	NM_001295	1230	Hs.301921	NM_001295	HPRD:03101	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	chemokine (C-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_56187	chr2	148052454	148052784	+	12.66516	NA	Intergenic	Intergenic	-549467	NM_001278580	92	Hs.470174	NM_001616	HPRD:00025	ACVR2A	ACTRII|ACVR2	activin A receptor, type IIA	protein-coding
19-PTNLD28-TUMOR_peak_52734	chr2	49980527	49980747	+	12.66516	NA	Intergenic	L2a|LINE|L2	594257	NM_138735	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_81537	chr5	111491124	111491258	+	12.66516	NA	Intergenic	Intergenic	-5032	NR_015370	114915	Hs.12082	NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_67444	chr3	33146974	33147103	+	12.66516	NA	Intergenic	LTR16D|LTR|ERVL	-8344	NM_000404	2720	Hs.443031	NM_000404	HPRD:01975	GLB1	EBP|ELNR1|MPS4B	galactosidase, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_102447	chr9	21506871	21507158	+	12.66516	NA	intron (NR_027054, intron 1 of 3)	intron (NR_027054, intron 1 of 3)	5170	NR_029505	407035		NR_029505	miRBase:MI0000089	MIR31	MIRN31|hsa-mir-31|miR-31	microRNA 31	ncRNA
19-PTNLD28-TUMOR_peak_20960	chr11	106797126	106797287	+	12.66516	NA	intron (NM_001256424, intron 4 of 8)	intron (NM_001256424, intron 4 of 8)	91965	NM_000855	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_92063	chr7	37871902	37872077	+	12.66516	NA	Intergenic	Intergenic	-16210	NM_016616	51314	Hs.723454	NM_016616	HPRD:16243	NME8	CILD6|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
19-PTNLD28-TUMOR_peak_53278	chr2	69271160	69271326	+	12.66516	NA	intron (NM_053034, intron 2 of 14)	MamRep605|Unknown|Unknown	30967	NM_032208	84168	Hs.165859	NM_018153	HPRD:05913	ANTXR1	ATR|GAPO|TEM8	anthrax toxin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_88362	chr6	74754549	74754663	+	12.66516	NA	Intergenic	Intergenic	-24561	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_45838	chr18	52989555	52989913	+	12.66516	NA	promoter-TSS (NM_001243235)	promoter-TSS (NM_001243235)	-644	NM_001243234	6925	Hs.605153	NM_003199	HPRD:03780	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_12613	chr10	28721224	28721366	+	12.66516	NA	Intergenic	Intergenic	99988	NR_033805	220906	Hs.403253	NR_033805	ENSG00000254635	WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_13648	chr10	53592837	53592953	+	12.66516	NA	intron (NM_006258, intron 4 of 17)	intron (NM_006258, intron 4 of 17)	-133540	NM_015235	23283	Hs.591358	NM_015235	HPRD:09900	CSTF2T	CstF-64T	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	protein-coding
19-PTNLD28-TUMOR_peak_93705	chr7	82631062	82631275	+	12.66516	NA	intron (NM_033026, intron 3 of 24)	MLT1H2|LTR|ERVL-MaLR	161029	NM_014510	27445	Hs.12376	NM_014510	HPRD:16078	PCLO	ACZ	piccolo presynaptic cytomatrix protein	protein-coding
19-PTNLD28-TUMOR_peak_62858	chr21	18280534	18280671	+	12.66516	NA	Intergenic	ERVL-E-int|LTR|ERVL	318045	NR_029694	406912		NR_029694	miRBase:MI0000470	MIR125B2	MIRN125B2	microRNA 125b-2	ncRNA
19-PTNLD28-TUMOR_peak_35990	chr16	4374225	4374364	+	12.66516	NA	TTS (NR_110901)	TTS (NR_110901)	4047	NR_110901	101926896	Hs.670300	NR_110901		LOC101926896	-	uncharacterized LOC101926896	ncRNA
19-PTNLD28-TUMOR_peak_78470	chr4	189569201	189569414	+	12.66516	NA	Intergenic	L2a|LINE|L2	192575	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_57939	chr2	204808542	204808648	+	12.66516	NA	intron (NM_012092, intron 1 of 4)	L1PBa1|LINE|L1	7124	NM_012092	29851	Hs.56247	NM_012092	HPRD:09196	ICOS	AILIM|CD278|CVID1	inducible T-cell co-stimulator	protein-coding
19-PTNLD28-TUMOR_peak_44442	chr18	7966926	7967032	+	12.66516	NA	intron (NM_001105244, intron 7 of 32)	L1PA2|LINE|L1	399665	NM_001105244	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_76705	chr4	115008763	115008903	+	12.66516	NA	Intergenic	Intergenic	-107955	NM_024590	79642	Hs.22895	NM_024590	HPRD:08034	ARSJ	-	arylsulfatase family, member J	protein-coding
19-PTNLD28-TUMOR_peak_14103	chr10	71982296	71982420	+	12.66516	NA	intron (NM_021129, intron 2 of 10)	intron (NM_021129, intron 2 of 10)	10832	NM_021129	5464	Hs.437403	NM_021129	HPRD:01527	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
19-PTNLD28-TUMOR_peak_40158	chr17	9447654	9447947	+	12.66516	NA	intron (NR_033656, intron 2 of 5)	intron (NR_033656, intron 2 of 5)	31475	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
19-PTNLD28-TUMOR_peak_66155	chr3	271085	271236	+	12.66516	NA	intron (NR_045572, intron 1 of 2)	intron (NR_045572, intron 1 of 2)	31834	NR_045572	10752	Hs.148909	NM_006614	HPRD:07598	CHL1	CALL|L1CAM2	cell adhesion molecule L1-like	protein-coding
19-PTNLD28-TUMOR_peak_48372	chr19	29196052	29196186	+	12.66516	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	22482	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_32595	chr15	23921459	23921680	+	12.66516	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	10881	NM_002487	4692	Hs.50130	NM_002487	HPRD:03667	NDN	HsT16328|PWCR	necdin, melanoma antigen (MAGE) family member	protein-coding
19-PTNLD28-TUMOR_peak_58995	chr2	236044763	236044939	+	12.66516	NA	Intergenic	Intergenic	184223	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_27681	chr13	30946044	30946295	+	12.66516	NA	intron (NR_024464, intron 2 of 4)	intron (NR_024464, intron 2 of 4)	1882	NR_024464	100188949	Hs.439791	NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
19-PTNLD28-TUMOR_peak_3397	chr1	49110005	49110121	+	12.66516	NA	intron (NM_032785, intron 8 of 13)	L2b|LINE|L2	132484	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_30298	chr14	52598498	52598656	+	12.66516	NA	Intergenic	Intergenic	-62631	NM_007361	22795	Hs.369840	NM_007361	HPRD:05654	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
19-PTNLD28-TUMOR_peak_92566	chr7	51370584	51370706	+	12.66516	NA	intron (NM_001287436, intron 1 of 13)	intron (NM_001287436, intron 1 of 13)	13870	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_99252	chr8	75912194	75912438	+	12.66516	NA	promoter-TSS (NM_001286778)	promoter-TSS (NM_001286778)	-73	NM_001286777	83690	Hs.436542	NM_031461	HPRD:16756	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_12530	chr10	26333180	26333293	+	12.66516	NA	intron (NM_017433, intron 10 of 34)	L1M1|LINE|L1	110234	NM_017433	53904	Hs.662630	NM_017433	HPRD:06008	MYO3A	DFNB30	myosin IIIA	protein-coding
19-PTNLD28-TUMOR_peak_64347	chr22	19617564	19617681	+	12.66516	NA	Intergenic	Intergenic	-63260	NR_024381	150185	Hs.719752	NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
19-PTNLD28-TUMOR_peak_34784	chr15	81019623	81019928	+	12.66516	NA	intron (NM_021214, intron 1 of 2)	intron (NM_021214, intron 1 of 2)	32123	NM_021214	58489	Hs.459072	NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C	protein-coding
19-PTNLD28-TUMOR_peak_64933	chr22	28405331	28405576	+	12.66516	NA	intron (NM_001145418, intron 14 of 22)	intron (NM_001145418, intron 14 of 22)	-88853	NR_036169	100423034		NR_036169	miRBase:MI0014247	MIR3199-1	-	microRNA 3199-1	ncRNA
19-PTNLD28-TUMOR_peak_1719	chr1	27204589	27204736	+	12.66516	NA	Intergenic	Intergenic	12207	NM_018066	54707	Hs.14333	NM_018066		GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_91406	chr7	17460296	17460482	+	12.66516	NA	intron (NR_110015, intron 1 of 2)	intron (NR_110015, intron 1 of 2)	45848	NR_110015	102659288	Hs.559488	NR_110014		LOC102659288	-	uncharacterized LOC102659288	ncRNA
19-PTNLD28-TUMOR_peak_109630	chrX	139381665	139381844	+	12.66516	NA	Intergenic	Intergenic	205471	NM_005634	6658	Hs.157429	NM_005634	HPRD:02432	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
19-PTNLD28-TUMOR_peak_73033	chr3	187570974	187571119	+	12.66516	NA	Intergenic	Intergenic	-107533	NM_001706	604	Hs.478588	NM_001706	HPRD:00180	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding
19-PTNLD28-TUMOR_peak_27917	chr13	40517073	40517355	+	12.66516	NA	Intergenic	Intergenic	-238732	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
19-PTNLD28-TUMOR_peak_105039	chr9	103881640	103881752	+	12.66516	NA	intron (NM_207299, intron 1 of 7)	intron (NM_207299, intron 1 of 7)	-65621	NM_017753	54886	Hs.382683	NM_017753	HPRD:17906	LPPR1	PRG-3	lipid phosphate phosphatase-related protein type 1	protein-coding
19-PTNLD28-TUMOR_peak_21895	chr11	125303492	125303605	+	12.66516	NA	TTS (NM_022062)	TTS (NM_022062)	62658	NM_005103	9638	Hs.224008	NM_005103	HPRD:09212	FEZ1	-	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
19-PTNLD28-TUMOR_peak_30243	chr14	51271213	51271447	+	12.66516	NA	intron (NM_182946, intron 4 of 29)	intron (NM_182946, intron 4 of 29)	26509	NM_016350	51199	Hs.310429	NM_016350	HPRD:09785	NIN	SCKL7	ninein (GSK3B interacting protein)	protein-coding
19-PTNLD28-TUMOR_peak_20787	chr11	100316058	100316180	+	12.66516	NA	Intergenic	Intergenic	-242288	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_81010	chr5	82391817	82391970	+	12.66516	NA	intron (NM_022550, intron 1 of 7)	L1M3a|LINE|L1	18576	NM_003401	7518	Hs.567359	NM_003401	HPRD:15951	XRCC4	-	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding
19-PTNLD28-TUMOR_peak_104027	chr9	81054518	81054648	+	12.66516	NA	Intergenic	Intergenic	142592	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_99615	chr8	98102339	98102523	+	12.66516	NA	intron (NM_016134, intron 7 of 7)	MIRc|SINE|MIR	187745	NM_033512	85453	Hs.173094	NM_033512	HPRD:15576	TSPYL5	-	TSPY-like 5	protein-coding
19-PTNLD28-TUMOR_peak_68712	chr3	63047222	63047442	+	12.66516	NA	Intergenic	Intergenic	-41032	NR_027104	285401	Hs.211125	NR_027104	ENSG00000244342	LINC00698	-	long intergenic non-protein coding RNA 698	ncRNA
19-PTNLD28-TUMOR_peak_102172	chr9	10443556	10443751	+	12.66516	NA	intron (NM_002839, intron 2 of 45)	intron (NM_002839, intron 2 of 45)	169070	NM_002839	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_92209	chr7	43479468	43479625	+	12.66516	NA	intron (NM_015052, intron 9 of 29)	intron (NM_015052, intron 9 of 29)	82595	NR_038276	100506895	Hs.676047	NR_038276	ENSG00000231638	LOC100506895	-	uncharacterized LOC100506895	ncRNA
19-PTNLD28-TUMOR_peak_81844	chr5	123688099	123688268	+	12.66516	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	86030	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_104287	chr9	88791488	88791644	+	12.66516	NA	Intergenic	MER89|LTR|ERV1	49111	NR_110996	101927623	Hs.575644	NR_110996		LOC101927623	-	uncharacterized LOC101927623	ncRNA
19-PTNLD28-TUMOR_peak_109657	chrX	141425943	141426129	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-132960	NM_016249	51438	Hs.123536	NM_016249	HPRD:06632	MAGEC2	CT10|HCA587|MAGEE1	melanoma antigen family C, 2	protein-coding
19-PTNLD28-TUMOR_peak_99535	chr8	95003711	95003948	+	12.66516	NA	Intergenic	Intergenic	74550	NM_001161781	54704	Hs.22265	NM_018444	HPRD:16185	PDP1	PDH|PDP|PDPC|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_88035	chr6	53538031	53538271	+	12.66516	NA	Intergenic	Intergenic	-7645	NM_001003760	401265	Hs.131064	NM_001003760	HPRD:13923	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch-like family member 31	protein-coding
19-PTNLD28-TUMOR_peak_88388	chr6	75984923	75985078	+	12.66516	NA	intron (NM_018247, intron 1 of 6)	L2a|LINE|L2	9632	NM_018247	55754	Hs.108530	NM_018247	HPRD:15535	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
19-PTNLD28-TUMOR_peak_75666	chr4	74719094	74719229	+	12.66516	NA	exon (NM_002620, exon 1 of 3)	exon (NM_002620, exon 1 of 3)	148	NM_002620	5197	Hs.72933	NM_002620		PF4V1	CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1	platelet factor 4 variant 1	protein-coding
19-PTNLD28-TUMOR_peak_76272	chr4	92164540	92164690	+	12.66516	NA	intron (NM_001145065, intron 10 of 10)	L1M1|LINE|L1	1008433	NM_207491	401145	Hs.654735	NM_207491	HPRD:17561	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_53500	chr2	73688044	73688163	+	12.66516	NA	intron (NM_015120, intron 9 of 22)	L1PA4|LINE|L1	3873	NR_046762	100874291	Hs.668279	NR_046762		ALMS1-IT1	-	ALMS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_72236	chr3	169581264	169581433	+	12.66516	NA	intron (NM_001277128, intron 1 of 7)	intron (NM_001277128, intron 1 of 7)	6375	NM_001277128	79782	Hs.411295	NM_024727	HPRD:08023	LRRC31	HEL-S-293	leucine rich repeat containing 31	protein-coding
19-PTNLD28-TUMOR_peak_46774	chr19	4145883	4146015	+	12.66516	NA	Intergenic	Intergenic	-7649	NM_001271995	84699	Hs.247744	NM_032607	HPRD:16752	CREB3L3	CREB-H|CREBH	cAMP responsive element binding protein 3-like 3	protein-coding
19-PTNLD28-TUMOR_peak_33413	chr15	45260172	45260304	+	12.66516	NA	intron (NM_152448, intron 5 of 6)	intron (NM_152448, intron 5 of 6)	11338	NM_152448	145645	Hs.567701	NM_152448	HPRD:17528	C15orf43	-	chromosome 15 open reading frame 43	protein-coding
19-PTNLD28-TUMOR_peak_56546	chr2	159892659	159892846	+	12.66516	NA	intron (NM_001145909, intron 2 of 26)	intron (NM_001145909, intron 2 of 26)	67606	NM_033394	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_109348	chrX	120775480	120775692	+	12.66516	NA	Intergenic	Intergenic	594124	NM_012084	2747	Hs.368538	NM_012084	HPRD:02143	GLUD2	GDH2|GLUDP1	glutamate dehydrogenase 2	protein-coding
19-PTNLD28-TUMOR_peak_104932	chr9	101172539	101172774	+	12.66516	NA	intron (NM_005458, intron 7 of 18)	LTR33B|LTR|ERVL	-154653	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_105478	chr9	115555623	115555765	+	12.66516	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	42560	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
19-PTNLD28-TUMOR_peak_31473	chr14	78432255	78432710	+	12.66516	NA	Intergenic	CpG	166056	NM_020421	57143	Hs.413208	NM_020421	HPRD:10630	ADCK1	-	aarF domain containing kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_98776	chr8	54640380	54640491	+	12.66516	NA	intron (NM_213619, intron 12 of 12)	L2b|LINE|L2	115167	NM_213620	51606	Hs.491737	NM_015941	HPRD:10591	ATP6V1H	MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	protein-coding
19-PTNLD28-TUMOR_peak_24857	chr12	59478926	59479111	+	12.66516	NA	Intergenic	Intergenic	-164699	NM_153377	121227	Hs.253736	NM_153377	HPRD:08317	LRIG3	LIG3	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_89511	chr6	133951922	133952057	+	12.66516	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-190296	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
19-PTNLD28-TUMOR_peak_79203	chr5	20572797	20573014	+	12.66516	NA	intron (NM_001291956, intron 1 of 14)	intron (NM_001291956, intron 1 of 14)	3077	NM_001291956	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_8763	chr1	183512828	183512996	+	12.66516	NA	intron (NM_001174061, intron 13 of 21)	intron (NM_001174061, intron 13 of 21)	46827	NM_001190794	4688	Hs.587558	NM_000433	HPRD:01991	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
19-PTNLD28-TUMOR_peak_78168	chr4	182964252	182964420	+	12.66516	NA	Intergenic	Intergenic	101332	NR_027107	90768	Hs.175465	NM_178838		MGC45800	-	uncharacterized LOC90768	ncRNA
19-PTNLD28-TUMOR_peak_8898	chr1	186152443	186152614	+	12.66516	NA	intron (NM_031935, intron 105 of 106)	intron (NM_031935, intron 105 of 106)	-112877	NM_001127709	10216	Hs.647723	NM_005807	HPRD:05047	PRG4	CACP|HAPO|JCAP|MSF|SZP|bG174L6.2	proteoglycan 4	protein-coding
19-PTNLD28-TUMOR_peak_20195	chr11	77072340	77072481	+	12.66516	NA	intron (NM_002576, intron 5 of 14)	L2a|LINE|L2	-73947	NM_182833	220032	Hs.249795	NM_182833	HPRD:17320	GDPD4	GDE6	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_68845	chr3	66458296	66458438	+	12.66516	NA	intron (NM_015541, intron 7 of 18)	intron (NM_015541, intron 7 of 18)	92478	NM_015541	26018	Hs.518055	NM_015541	HPRD:10057	LRIG1	LIG-1|LIG1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_75598	chr4	70187928	70188046	+	12.66516	NA	Intergenic	MER52-int|LTR|ERV1	41770	NM_053039	54490	Hs.653154	NM_053039	HPRD:05931	UGT2B28	-	UDP glucuronosyltransferase 2 family, polypeptide B28	protein-coding
19-PTNLD28-TUMOR_peak_92120	chr7	40092149	40092305	+	12.66516	NA	intron (NM_031267, intron 7 of 13)	intron (NM_031267, intron 7 of 13)	82024	NM_138701	136647	Hs.654989	NM_138701		MPLKIP	ABHS|C7orf11|ORF20	M-phase specific PLK1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_108421	chrX	54909045	54909171	+	12.66516	NA	Intergenic	L1P1|LINE|L1	-37888	NM_177556	7216	Hs.633653	NM_016157	HPRD:02134	TRO	MAGE-d3|MAGED3	trophinin	protein-coding
19-PTNLD28-TUMOR_peak_97092	chr8	9791297	9791421	+	12.66516	NA	Intergenic	CpG	-30377	NR_029668	406907		NR_029668	miRBase:MI0000443	MIR124-1	MIR124A|MIR124A1|MIRN124-1|MIRN124A1	microRNA 124-1	ncRNA
19-PTNLD28-TUMOR_peak_44615	chr18	11921213	11921349	+	12.66516	NA	Intergenic	AluY|SINE|Alu	-12485	NR_040241	65258	Hs.712666	NM_023075	HPRD:14734	MPPE1	PGAP5	metallophosphoesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_92160	chr7	42267719	42267843	+	12.66516	NA	intron (NM_000168, intron 1 of 14)	CpG	8837	NM_000168	2737	Hs.21509	NM_000168	HPRD:01313	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_79654	chr5	40904950	40905069	+	12.66516	NA	Intergenic	Intergenic	-4590	NM_000587	730	Hs.78065	NM_000587	HPRD:01957	C7	-	complement component 7	protein-coding
19-PTNLD28-TUMOR_peak_12378	chr10	23138540	23138648	+	12.66516	NA	Intergenic	Intergenic	-78359	NM_001282746	219681	Hs.659807	NM_173081	HPRD:12487	ARMC3	CT81|KU-CT-1	armadillo repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_4352	chr1	73491938	73492124	+	12.66516	NA	Intergenic	Intergenic	-279822	NR_110677	101927295	Hs.436589	NR_110676	ENSG00000233973	LINC01360	-	long intergenic non-protein coding RNA 1360	ncRNA
19-PTNLD28-TUMOR_peak_107700	chrX	18044364	18044646	+	12.66516	NA	Intergenic	Intergenic	-165048	NM_001172739	10742	Hs.446680	NM_021785	HPRD:02199	RAI2	-	retinoic acid induced 2	protein-coding
19-PTNLD28-TUMOR_peak_63436	chr21	38311840	38311982	+	12.66516	NA	intron (NM_001242784, intron 3 of 11)	intron (NM_001242784, intron 3 of 11)	27045	NM_001242784	3141	Hs.371350	NM_000411	HPRD:08360	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
19-PTNLD28-TUMOR_peak_97995	chr8	29778041	29778172	+	12.66516	NA	promoter-TSS (NR_024473)	promoter-TSS (NR_024473)	-923	NR_024473	286135	Hs.376840	NR_024473	ENSG00000253279	FAM183CP	-	family with sequence similarity 183, member C, pseudogene	ncRNA
19-PTNLD28-TUMOR_peak_67085	chr3	20553431	20553594	+	12.66516	NA	Intergenic	L1PA15-16|LINE|L1	169552	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
19-PTNLD28-TUMOR_peak_83824	chr5	169548460	169548608	+	12.66516	NA	Intergenic	MER113|DNA|hAT-Charlie	15617	NM_144769	2299	Hs.87236	NM_012188	HPRD:03057	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding
19-PTNLD28-TUMOR_peak_71438	chr3	143183800	143183969	+	12.66516	NA	intron (NM_173653, intron 12 of 15)	intron (NM_173653, intron 12 of 15)	122796	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27739	chr13	31998386	31998514	+	12.66516	NA	Intergenic	Intergenic	224338	NM_194318	145173	Hs.13205	NM_194318	HPRD:12513	B3GALTL	B3GLCT|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 1,3-galactosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_33068	chr15	36924493	36924710	+	12.66516	NA	intron (NM_001290232, intron 1 of 10)	LTR48|LTR|ERV1	37531	NM_001290232	84529	Hs.48348	NM_032499	HPRD:13650	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding
19-PTNLD28-TUMOR_peak_73629	chr3	196913987	196914159	+	12.66516	NA	intron (NM_001098424, intron 5 of 25)	intron (NM_001098424, intron 5 of 25)	-3071	NM_001204387	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_50215	chr19	54015228	54015368	+	12.66516	NA	Intergenic	Intergenic	-8879	NM_018555	55422	Hs.185674	NM_018555	HPRD:05827	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
19-PTNLD28-TUMOR_peak_52595	chr2	46946815	46946963	+	12.66516	NA	intron (NM_144949, intron 1 of 1)	intron (NM_144949, intron 1 of 1)	20540	NM_144949	9655	Hs.468426	NM_014011	HPRD:06159	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
19-PTNLD28-TUMOR_peak_7789	chr1	163015964	163016139	+	12.66516	NA	Intergenic	MIR3|SINE|MIR	-22345	NM_001102445	5999	Hs.386726	NM_005613	HPRD:03947	RGS4	RGP4|SCZD9	regulator of G-protein signaling 4	protein-coding
19-PTNLD28-TUMOR_peak_20357	chr11	82343287	82343512	+	12.66516	NA	Intergenic	Intergenic	101507	NM_175885	220382	Hs.448218	NM_175885	HPRD:14575	FAM181B	-	family with sequence similarity 181, member B	protein-coding
19-PTNLD28-TUMOR_peak_33520	chr15	49428148	49428334	+	12.66516	NA	intron (NM_004236, intron 6 of 12)	intron (NM_004236, intron 6 of 12)	19613	NM_001143887	9318	Hs.369614	NM_004236	HPRD:05146	COPS2	ALIEN|CSN2|SGN2|TRIP15	COP9 signalosome subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_81644	chr5	114641828	114641969	+	12.66516	NA	Intergenic	Intergenic	-9440	NM_001040440	153733	Hs.436121	NM_152549	HPRD:11346	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
19-PTNLD28-TUMOR_peak_68005	chr3	47952398	47952525	+	12.66516	NA	intron (NM_002375, intron 8 of 18)	intron (NM_002375, intron 8 of 18)	61416	NR_031595	100302232		NR_031595		MIR1226	MIRN1226|hsa-mir-1226	microRNA 1226	ncRNA
19-PTNLD28-TUMOR_peak_69705	chr3	111056982	111057163	+	12.66516	NA	Intergenic	Intergenic	-203854	NM_005816	10225	Hs.142023	NM_005816	HPRD:06916	CD96	TACTILE	CD96 molecule	protein-coding
19-PTNLD28-TUMOR_peak_103773	chr9	73483897	73484103	+	12.66516	NA	promoter-TSS (NM_206947)	promoter-TSS (NM_206947)	-26	NM_206945	80036	Hs.47288	NM_020952	HPRD:10605	TRPM3	GON-2|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
19-PTNLD28-TUMOR_peak_12600	chr10	28469741	28469935	+	12.66516	NA	intron (NM_173496, intron 5 of 18)	MLT1I|LTR|ERVL-MaLR	101229	NM_173496	143098	Hs.499159	NM_173496	HPRD:14733	MPP7	-	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
19-PTNLD28-TUMOR_peak_108668	chrX	70366269	70366400	+	12.66516	NA	intron (NM_181303, intron 1 of 7)	intron (NM_181303, intron 1 of 7)	1653	NM_001166660	54413	Hs.438877	NM_018977	HPRD:02275	NLGN3	HNL3	neuroligin 3	protein-coding
19-PTNLD28-TUMOR_peak_99217	chr8	74540470	74540596	+	12.66516	NA	intron (NM_001164383, intron 1 of 9)	AluJo|SINE|Alu	118629	NM_001164383	27067	Hs.561815	NM_014393	HPRD:09328	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_57688	chr2	198965193	198965342	+	12.66516	NA	intron (NM_006226, intron 3 of 5)	intron (NM_006226, intron 3 of 5)	274554	NR_110267	101927619	Hs.632942	NR_110267		LOC101927619	-	uncharacterized LOC101927619	ncRNA
19-PTNLD28-TUMOR_peak_45388	chr18	40866369	40866479	+	12.66516	NA	Intergenic	L1PA4|LINE|L1	-8809	NM_020783	6860	Hs.8059	NM_020783	HPRD:02519	SYT4	HsT1192	synaptotagmin IV	protein-coding
19-PTNLD28-TUMOR_peak_79614	chr5	39624752	39624892	+	12.66516	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	104289	NR_104632	101926940	Hs.436359	NR_104632	ENSG00000271334	LOC101926940	-	uncharacterized LOC101926940	ncRNA
19-PTNLD28-TUMOR_peak_27241	chr12	132158452	132158670	+	12.66516	NA	Intergenic	AluJr|SINE|Alu	-37071	NM_004592	6433	Hs.308171	NM_004592	HPRD:09055	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot family	protein-coding
19-PTNLD28-TUMOR_peak_94948	chr7	117684610	117684768	+	12.66516	NA	Intergenic	L2|LINE|L2	-139397	NM_016200	51691	Hs.655046	NM_016200		LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_90185	chr6	156748512	156748809	+	12.66516	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-350404	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_4408	chr1	76802845	76803016	+	12.66516	NA	intron (NM_152996, intron 2 of 4)	intron (NM_152996, intron 2 of 4)	262541	NM_001160011	256435	Hs.337040	NM_152996		ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_101053	chr8	132968114	132968514	+	12.66516	NA	intron (NM_015137, intron 7 of 22)	intron (NM_015137, intron 7 of 22)	51958	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_23710	chr12	33260784	33260924	+	12.66516	NA	Intergenic	L1PA6|LINE|L1	-211074	NM_001005242	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_75736	chr4	76988951	76989052	+	12.66516	NA	intron (NM_001130017, intron 1 of 9)	intron (NM_001130017, intron 1 of 9)	-6847	NM_001179	419	Hs.24976	NM_001179	HPRD:04363	ART3	ARTC3	ADP-ribosyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_27814	chr13	35036940	35037170	+	12.66516	NA	intron (NR_047036, intron 2 of 2)	intron (NR_047036, intron 2 of 2)	177767	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA
19-PTNLD28-TUMOR_peak_46293	chr18	73925014	73925207	+	12.66516	NA	Intergenic	Intergenic	90157	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
19-PTNLD28-TUMOR_peak_36975	chr16	27437837	27437969	+	12.66516	NA	promoter-TSS (NM_021798)	promoter-TSS (NM_021798)	-676	NM_021798	50615	Hs.210546	NM_021798		IL21R	CD360|NILR	interleukin 21 receptor	protein-coding
19-PTNLD28-TUMOR_peak_45722	chr18	47766416	47766785	+	12.66516	NA	intron (NM_145020, intron 6 of 7)	LTR10F|LTR|ERV1	26265	NM_145020	220136	Hs.658630	NM_145020	HPRD:09958	CCDC11	HTX6	coiled-coil domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_83654	chr5	160827727	160827884	+	12.66516	NA	intron (NM_000813, intron 6 of 9)	intron (NM_000813, intron 6 of 9)	147325	NM_021911	2561	Hs.303527	NM_000813	HPRD:02578	GABRB2	-	gamma-aminobutyric acid (GABA) A receptor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_68500	chr3	56528800	56528929	+	12.66516	NA	Intergenic	Intergenic	-26473	NM_015576	26059	Hs.476389	NM_015576	HPRD:10810	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
19-PTNLD28-TUMOR_peak_61156	chr20	41123045	41123199	+	12.66516	NA	intron (NM_133170, intron 7 of 31)	intron (NM_133170, intron 7 of 31)	-191001	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_94444	chr7	101317397	101317553	+	12.66516	NA	Intergenic	Intergenic	-44899	NM_138403	93408	Hs.247831	NM_138403	HPRD:17620	MYL10	MYLC2PL|PLRLC	myosin, light chain 10, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_17238	chr11	12452529	12452671	+	12.66516	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	53574	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	parvin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_10027	chr1	214502293	214502470	+	12.66516	NA	intron (NM_020197, intron 7 of 11)	intron (NM_020197, intron 7 of 11)	47816	NM_020197	56950	Hs.66170	NM_020197	HPRD:15406	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_14710	chr10	87888179	87888405	+	12.66516	NA	intron (NM_017551, intron 4 of 15)	intron (NM_017551, intron 4 of 15)	136253	NR_029907	442911		NR_029907		MIR346	MIRN346|hsa-mir-346|miR-346|miRNA346	microRNA 346	ncRNA
19-PTNLD28-TUMOR_peak_20905	chr11	103646482	103646636	+	12.66516	NA	Intergenic	MIRb|SINE|MIR	-74075	NR_039842	100616457		NR_039842	miRBase:MI0017326	MIR4693	-	microRNA 4693	ncRNA
19-PTNLD28-TUMOR_peak_81985	chr5	127323870	127324164	+	12.66516	NA	Intergenic	Intergenic	94749	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
19-PTNLD28-TUMOR_peak_91751	chr7	28094817	28094991	+	12.66516	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-125172	NR_034097	100128081	Hs.434307	NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102605	chr9	30504545	30504777	+	12.66516	NA	Intergenic	Intergenic	-96209	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_75908	chr4	80625783	80626211	+	12.66516	NA	Intergenic	L1HS|LINE|L1	-122628	NR_026555	118425	Hs.104215	NR_026555	HPRD:17035	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_66192	chr3	2434761	2435007	+	12.66516	NA	intron (NM_175607, intron 3 of 24)	MLT1C|LTR|ERVL-MaLR	154371	NM_001206955	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_109250	chrX	116334162	116334374	+	12.66516	NA	Intergenic	Intergenic	-740074	NM_001017978	203413	Hs.97892	NM_001017978	HPRD:18577	CT83	CXorf61|KK-LC-1|KKLC1	cancer/testis antigen 83	protein-coding
19-PTNLD28-TUMOR_peak_61038	chr20	38431177	38431278	+	12.66516	NA	Intergenic	L1HS|LINE|L1	-201876	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_24252	chr12	51925799	51925934	+	12.66516	NA	Intergenic	Intergenic	-59154	NM_001177984	6334	Hs.436550	NM_014191	HPRD:09006	SCN8A	CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium channel, voltage gated, type VIII, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_5768	chr1	116337777	116337911	+	12.66516	NA	Intergenic	Intergenic	-26418	NM_001232	845	Hs.57975	NM_001232	HPRD:00256	CASQ2	PDIB2	calsequestrin 2 (cardiac muscle)	protein-coding
19-PTNLD28-TUMOR_peak_23279	chr12	16879950	16880100	+	12.66516	NA	Intergenic	L2c|LINE|L2	-118877	NR_045014	55885	Hs.504908	NM_018640	HPRD:11832	LMO3	RBTN3|RBTNL2|RHOM3|Rhom-3	LIM domain only 3 (rhombotin-like 2)	protein-coding
19-PTNLD28-TUMOR_peak_30121	chr14	48302350	48302499	+	12.66516	NA	Intergenic	Intergenic	-38207	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_23599	chr12	30736012	30736177	+	12.66516	NA	Intergenic	L2c|LINE|L2	94084	NM_001190995	10526	Hs.505136	NM_006390	HPRD:09282	IPO8	RANBP8	importin 8	protein-coding
19-PTNLD28-TUMOR_peak_78468	chr4	189308625	189308848	+	12.66516	NA	Intergenic	Intergenic	-67996	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_103992	chr9	79714547	79714705	+	12.66516	NA	Intergenic	Intergenic	-77735	NM_001018038	23230	Hs.459790	NM_015186	HPRD:05814	VPS13A	CHAC|CHOREIN	vacuolar protein sorting 13 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_22997	chr12	10095982	10096215	+	12.66516	NA	promoter-TSS (NR_104634)	promoter-TSS (NR_104634)	-4	NR_104634	100506159	Hs.282397	NR_104634		LOC100506159	-	uncharacterized LOC100506159	ncRNA
19-PTNLD28-TUMOR_peak_107329	chrUn_gl000249	14529	14665	+	12.66516	NA	NA	AluJb|SINE|Alu	NA	NA								
19-PTNLD28-TUMOR_peak_68648	chr3	59531203	59531396	+	12.66516	NA	Intergenic	Intergenic	-495584	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_73300	chr3	193272626	193272853	+	12.66516	NA	promoter-TSS (NM_032279)	promoter-TSS (NM_032279)	-43	NM_032279	84239	Hs.674423	NM_032279	HPRD:12502	ATP13A4	-	ATPase type 13A4	protein-coding
19-PTNLD28-TUMOR_peak_17656	chr11	22561664	22561778	+	12.66516	NA	Intergenic	Intergenic	-48156	NR_120583	102723378	Hs.374255	NR_120583		LINC01495	-	long intergenic non-protein coding RNA 1495	ncRNA
19-PTNLD28-TUMOR_peak_74097	chr4	4961090	4961220	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	60042	NM_018659	54360	Hs.13872	NM_018659	HPRD:16260	CYTL1	C17|C4orf4	cytokine-like 1	protein-coding
19-PTNLD28-TUMOR_peak_32242	chr14	104270155	104270275	+	12.66516	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	43712	NM_015316	23368	Hs.709297	NM_015316	HPRD:07345	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1, regulatory subunit 13B	protein-coding
19-PTNLD28-TUMOR_peak_76277	chr4	92899446	92899640	+	12.66516	NA	Intergenic	L1HS|LINE|L1	-326007	NM_001286838	2895	Hs.162727	NM_001510	HPRD:06781	GRID2	GluD2	glutamate receptor, ionotropic, delta 2	protein-coding
19-PTNLD28-TUMOR_peak_24767	chr12	57782950	57783089	+	12.66516	NA	Intergenic	L2b|LINE|L2	-45449	NM_005538	3626	Hs.632722	NM_005538	HPRD:03136	INHBC	IHBC	inhibin, beta C	protein-coding
19-PTNLD28-TUMOR_peak_33055	chr15	35983075	35983323	+	12.66516	NA	intron (NR_038251, intron 1 of 2)	intron (NR_038251, intron 1 of 2)	-144795	NM_001141972	89978	Hs.107196	NM_080650	HPRD:14443	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
19-PTNLD28-TUMOR_peak_32023	chr14	100274175	100274351	+	12.66516	NA	intron (NM_001008707, intron 1 of 22)	intron (NM_001008707, intron 1 of 22)	14518	NM_001008707	2009	Hs.12451	NM_004434	HPRD:03613	EML1	ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_67495	chr3	36338799	36338936	+	12.66516	NA	Intergenic	Intergenic	-83112	NM_001292049	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_65250	chr22	35262898	35263028	+	12.66516	NA	Intergenic	L3|LINE|CR1	-199167	NM_001008494	91464	Hs.567637	NM_001008494	HPRD:17957	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_45909	chr18	55549166	55549315	+	12.66516	NA	Intergenic	Intergenic	-78913	NM_005603	5205	Hs.216623	NM_005603	HPRD:03867	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_62629	chr20	62504881	62505072	+	12.66516	NA	intron (NM_001243895, intron 2 of 5)	intron (NM_001243895, intron 2 of 5)	8395	NM_001243892	7165	Hs.473296	NM_003288	HPRD:11947	TPD52L2	D54	tumor protein D52-like 2	protein-coding
19-PTNLD28-TUMOR_peak_109177	chrX	110076757	110076921	+	12.66516	NA	Intergenic	MamRep38|DNA|hAT	-37553	NM_001143981	91851	Hs.496587	NM_145234	HPRD:02285	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31710	chr14	92210474	92210682	+	12.66516	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-12165	NM_024764	79820	Hs.131755	NM_024764	HPRD:16613	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_109219	chrX	114070755	114070872	+	12.66516	NA	intron (NM_001256761, intron 4 of 5)	L1PA2|LINE|L1	12796	NR_029955	554212		NR_029955		MIR448	MIRN448|hsa-mir-448|miRNA448	microRNA 448	ncRNA
19-PTNLD28-TUMOR_peak_88168	chr6	58558429	58558564	+	12.66516	NA	Intergenic	L1PA4|LINE|L1	-270772	NR_125728	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	glucuronidase, beta pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_16173	chr10	127318468	127318609	+	12.66516	NA	Intergenic	Intergenic	53175	NM_001128202	387718	Hs.148259	NM_001128202	ENSG00000175018	TEX36	C10orf122|bA383C5.1	testis expressed 36	protein-coding
19-PTNLD28-TUMOR_peak_22201	chr11	130590469	130590693	+	12.66516	NA	Intergenic	Intergenic	47730	NM_001271983	283171	Hs.376151	NM_001271983	HPRD:08250	C11orf44	-	chromosome 11 open reading frame 44	protein-coding
19-PTNLD28-TUMOR_peak_89849	chr6	147305405	147305590	+	12.66516	NA	intron (NR_034115, intron 6 of 10)	intron (NR_034115, intron 6 of 10)	-180537	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_93716	chr7	83153704	83153893	+	12.66516	NA	intron (NM_012431, intron 1 of 16)	intron (NM_012431, intron 1 of 16)	92939	NR_107016	102465857		NR_107016		MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
19-PTNLD28-TUMOR_peak_12165	chr10	15148504	15148628	+	12.66516	NA	3' UTR (NM_004808, exon 12 of 12)	3' UTR (NM_004808, exon 12 of 12)	-9248	NM_153244	221060	Hs.567777	NM_153244	HPRD:16572	C10orf111	bA455B2.4	chromosome 10 open reading frame 111	protein-coding
19-PTNLD28-TUMOR_peak_102272	chr9	15999762	15999902	+	12.66516	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	253273	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_28385	chr13	60586755	60586940	+	12.66516	NA	promoter-TSS (NR_051994)	promoter-TSS (NR_051994)	-5	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107581	chrX	13301858	13301995	+	12.66516	NA	Intergenic	Intergenic	-26845	NR_046087	100093698	Hs.643612	NR_046087	ENSG00000231216	GS1-600G8.3	-	unknown transcript	ncRNA
19-PTNLD28-TUMOR_peak_105916	chr9	124633864	124633966	+	12.66516	NA	intron (NM_001139442, intron 6 of 8)	intron (NM_001139442, intron 6 of 8)	128851	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_42417	chr17	53922766	53922887	+	12.66516	NA	Intergenic	CpG	94360	NM_001102402	58488	Hs.285218	NM_021213	HPRD:06927	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_79628	chr5	39949141	39949276	+	12.66516	NA	Intergenic	Intergenic	-103185	NR_104633	102467077	Hs.148993	NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
19-PTNLD28-TUMOR_peak_72143	chr3	163491052	163491163	+	12.66516	NA	Intergenic	L1M1|LINE|L1	-470018	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_52005	chr2	31547233	31547369	+	12.66516	NA	Intergenic	L1MEe|LINE|L1	90310	NM_000379	7498	Hs.250	NM_000379	HPRD:06363	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_1768	chr1	27699123	27699258	+	12.66516	NA	intron (NM_003665, intron 5 of 7)	intron (NM_003665, intron 5 of 7)	2125	NM_003665	8547	Hs.333383	NM_003665	HPRD:05399	FCN3	FCNH|HAKA1	ficolin (collagen/fibrinogen domain containing) 3	protein-coding
19-PTNLD28-TUMOR_peak_41026	chr17	32215587	32215744	+	12.66516	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	268160	NM_001094	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_94069	chr7	96407699	96407805	+	12.66516	NA	Intergenic	Intergenic	-68549	NM_006304	7979	Hs.489201	NM_006304		SHFM1	DSS1|ECD|SEM1|SHFD1|SHSF1|Shfdg1	split hand/foot malformation (ectrodactyly) type 1	protein-coding
19-PTNLD28-TUMOR_peak_107725	chrX	19597667	19597932	+	12.66516	NA	intron (NM_001024666, intron 11 of 16)	intron (NM_001024666, intron 11 of 16)	-64420	NM_001001671	389840	Hs.713701	NM_001001671	HPRD:14359	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
19-PTNLD28-TUMOR_peak_45422	chr18	42345531	42345722	+	12.66516	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	84763	NM_015559	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50476	chr19	57276603	57276733	+	12.66516	NA	promoter-TSS (NR_110744)	promoter-TSS (NR_110744)	-22	NR_110744	101929059	Hs.607132	NR_110744	ENSG00000269793	LOC101929059	-	uncharacterized LOC101929059	ncRNA
19-PTNLD28-TUMOR_peak_52072	chr2	34037940	34038048	+	12.66516	NA	Intergenic	Intergenic	-84710	NR_003143	151325	Hs.528847	NM_207329	HPRD:14793	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_69104	chr3	74838324	74838551	+	12.66516	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-268094	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
19-PTNLD28-TUMOR_peak_52248	chr2	39083416	39083590	+	12.66516	NA	exon (NM_198963, exon 7 of 24)	exon (NM_198963, exon 7 of 24)	19518	NM_198963	90957	Hs.468226	NM_198963	HPRD:09919	DHX57	DDX57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding
19-PTNLD28-TUMOR_peak_25774	chr12	99029847	99030018	+	12.66516	NA	intron (NM_153687, intron 1 of 2)	Tigger10|DNA|TcMar-Tigger	8897	NM_153687	121457	Hs.252543	NM_153687	HPRD:08092	IKBIP	IKIP	IKBKB interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_81302	chr5	98132087	98132274	+	12.66516	NA	TTS (NM_001012761)	TTS (NM_001012761)	-23392	NR_033932	503569	Hs.586188	NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_79202	chr5	19929252	19929426	+	12.66516	NA	intron (NM_001291956, intron 4 of 14)	intron (NM_001291956, intron 4 of 14)	-42958	NM_001291957	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_97477	chr8	20486880	20487236	+	12.66516	NA	Intergenic	LTR16A1|LTR|ERVL	-344439	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	ncRNA
19-PTNLD28-TUMOR_peak_28425	chr13	69901211	69901380	+	12.66516	NA	Intergenic	Intergenic	104817	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	-	long intergenic non-protein coding RNA 383	ncRNA
19-PTNLD28-TUMOR_peak_27873	chr13	38401843	38401983	+	12.66516	NA	intron (NM_016179, intron 1 of 10)	L1PA3|LINE|L1	42026	NM_001135957	7223	Hs.262960	NM_003306	HPRD:09154	TRPC4	HTRP-4|HTRP4|TRP4	transient receptor potential cation channel, subfamily C, member 4	protein-coding
19-PTNLD28-TUMOR_peak_95567	chr7	135357704	135357802	+	12.66516	NA	intron (NM_001130929, intron 2 of 2)	intron (NM_001130929, intron 2 of 2)	10532	NM_001130929	647087	Hs.200022	NM_001130929		C7orf73	PL-5283	chromosome 7 open reading frame 73	protein-coding
19-PTNLD28-TUMOR_peak_107579	chrX	13179231	13179348	+	12.66516	NA	Intergenic	Intergenic	-116372	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_52743	chr2	50841322	50841459	+	12.66516	NA	intron (NM_001135659, intron 9 of 23)	intron (NM_001135659, intron 9 of 23)	-266496	NM_138735	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_20485	chr11	87132472	87132634	+	12.66516	NA	Intergenic	Intergenic	383667	NR_033149	65084	Hs.188591	NM_022918		TMEM135	PMP52	transmembrane protein 135	protein-coding
19-PTNLD28-TUMOR_peak_93737	chr7	83854935	83855070	+	12.66516	NA	Intergenic	Intergenic	-30785	NM_006080	10371	Hs.252451	NM_006080		SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
19-PTNLD28-TUMOR_peak_21377	chr11	116434208	116434360	+	12.66516	NA	Intergenic	Intergenic	209430	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_23650	chr12	31910010	31910177	+	12.66516	NA	Intergenic	LTR8A|LTR|ERV1	-27985	NM_001278412	196394	Hs.585084	NM_001113402	HPRD:14115	AMN1	-	antagonist of mitotic exit network 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_66065	chr22	50118563	50118720	+	12.66516	NA	Intergenic	CpG	55317	NR_026993	90834	Hs.679408	NR_026993		LOC90834	-	uncharacterized protein BC001742	ncRNA
19-PTNLD28-TUMOR_peak_81207	chr5	94901386	94901530	+	12.66516	NA	intron (NM_198150, intron 1 of 7)	intron (NM_198150, intron 1 of 7)	10633	NM_198150	153642	Hs.585051	NM_198150	HPRD:13183	ARSK	TSULF	arylsulfatase family, member K	protein-coding
19-PTNLD28-TUMOR_peak_72147	chr3	163911011	163911310	+	12.66516	NA	Intergenic	L1PA16|LINE|L1	885123	NM_001041	6476	Hs.429596	NM_001041	HPRD:01962	SI	-	sucrase-isomaltase (alpha-glucosidase)	protein-coding
19-PTNLD28-TUMOR_peak_44674	chr18	12744204	12744307	+	12.66516	NA	intron (NR_110763, intron 1 of 1)	intron (NR_110763, intron 1 of 1)	5166	NR_110763	100996324	Hs.333275	NR_110763		LOC100996324	-	uncharacterized LOC100996324	ncRNA
19-PTNLD28-TUMOR_peak_77984	chr4	169552773	169552925	+	12.66516	NA	promoter-TSS (NM_001166109)	promoter-TSS (NM_001166109)	81	NM_001166109	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_49469	chr19	46684149	46684314	+	12.66516	NA	Intergenic	MLT2B3|LTR|ERVL	-29268	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
19-PTNLD28-TUMOR_peak_8167	chr1	171584753	171584879	+	12.66516	NA	Intergenic	LTR2B|LTR|ERV1	36957	NM_000261	4653	Hs.436037	NM_000261	HPRD:03387	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	myocilin, trabecular meshwork inducible glucocorticoid response	protein-coding
19-PTNLD28-TUMOR_peak_80241	chr5	63506831	63506994	+	12.66516	NA	intron (NM_001113561, intron 2 of 7)	LTR26|LTR|ERV1	45241	NM_178532	285671	Hs.657843	NM_178532	HPRD:15263	RNF180	-	ring finger protein 180	protein-coding
19-PTNLD28-TUMOR_peak_36790	chr16	22413237	22413350	+	12.66516	NA	Intergenic	Intergenic	-27355	NM_001802	1039	Hs.513430	NM_001802	HPRD:06681	CDR2	CDR62|Yo	cerebellar degeneration-related protein 2, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_65474	chr22	38510653	38510798	+	12.66516	NA	intron (NM_001004426, intron 13 of 15)	intron (NM_001004426, intron 13 of 15)	-4049	NM_025045	80115	Hs.474822	NM_025045	HPRD:07997	BAIAP2L2	-	BAI1-associated protein 2-like 2	protein-coding
19-PTNLD28-TUMOR_peak_83867	chr5	170108283	170108406	+	12.66516	NA	intron (NM_001278340, intron 2 of 8)	intron (NM_001278340, intron 2 of 8)	-102379	NM_001291985	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_77565	chr4	151788306	151788425	+	12.66516	NA	intron (NM_006726, intron 22 of 57)	intron (NM_006726, intron 22 of 57)	148054	NM_001199282	987	Hs.480938	NM_006726	HPRD:07344	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS-responsive vesicle trafficking, beach and anchor containing	protein-coding
19-PTNLD28-TUMOR_peak_41184	chr17	35989364	35989463	+	12.66516	NA	intron (NM_001291476, intron 6 of 15)	intron (NM_001291476, intron 6 of 15)	14080	NM_001291476	11056	Hs.590937	NM_007010	HPRD:09911	DDX52	HUSSY19|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding
19-PTNLD28-TUMOR_peak_69489	chr3	101882316	101882433	+	12.66516	NA	Intergenic	Intergenic	222671	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_31435	chr14	77640648	77640819	+	12.66516	NA	Intergenic	L1ME3B|LINE|L1	-7369	NM_020431	57156	Hs.22452	NM_020431	HPRD:16617	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
19-PTNLD28-TUMOR_peak_29860	chr14	34881792	34881892	+	12.66516	NA	Intergenic	SVA_D|Other|Other	49626	NM_138288	171546	Hs.740577	NM_138288	HPRD:16610	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase, small subunit A	protein-coding
19-PTNLD28-TUMOR_peak_45751	chr18	48192154	48192265	+	12.66516	NA	intron (NM_001292040, intron 2 of 3)	intron (NM_001292040, intron 2 of 3)	105725	NM_001292039	5596	Hs.433728	NM_002747	HPRD:01497	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_72415	chr3	173183026	173183205	+	12.66516	NA	intron (NM_014932, intron 2 of 6)	intron (NM_014932, intron 2 of 6)	66877	NM_014932	22871	Hs.478289	NM_014932	HPRD:07195	NLGN1	NL1	neuroligin 1	protein-coding
19-PTNLD28-TUMOR_peak_106505	chr9	134702638	134702775	+	12.66516	NA	Intergenic	L1MB3|LINE|L1	-89781	NM_005312	2889	Hs.127897	NM_005312	HPRD:02627	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_108917	chrX	92951112	92951236	+	12.66516	NA	intron (NM_001171110, intron 3 of 4)	intron (NM_001171110, intron 3 of 4)	22162	NM_001171111	286499	Hs.110069	NM_173698	HPRD:06562	FAM133A	CT115	family with sequence similarity 133, member A	protein-coding
19-PTNLD28-TUMOR_peak_28075	chr13	45097351	45097474	+	12.66516	NA	intron (NM_183422, intron 1 of 2)	L1MC2|LINE|L1	-48975	NM_001243798	8848	Hs.436383	NM_006022		TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_33683	chr15	57065597	57065787	+	12.66516	NA	Intergenic	Intergenic	-39408	NM_001288589	54816	Hs.511477	NM_017661	HPRD:15448	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
19-PTNLD28-TUMOR_peak_107781	chrX	22081547	22081724	+	12.66516	NA	intron (NM_001282754, intron 3 of 20)	intron (NM_001282754, intron 3 of 20)	31073	NM_001282754	5251	Hs.495834	NM_000444	HPRD:02387	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase homolog, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_65612	chr22	40504156	40504314	+	12.66516	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	63414	NM_001024843	23112	Hs.372082	NM_015088	ENSG00000100354	TNRC6B	-	trinucleotide repeat containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_29635	chr14	25435434	25435672	+	12.66516	NA	intron (NM_014178, intron 2 of 5)	intron (NM_014178, intron 2 of 5)	83542	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_107942	chrX	38093152	38093462	+	12.66516	NA	Intergenic	Intergenic	-13130	NM_001170750	8406	Hs.15154	NM_006307	HPRD:02175	SRPX	DRS|ETX1|HEL-S-83p|SRPX1	sushi-repeat containing protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_27544	chr13	26648938	26649050	+	12.66516	NA	Intergenic	Intergenic	-23796	NM_001007538	387914	Hs.433791	NM_001007538	HPRD:16589	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
19-PTNLD28-TUMOR_peak_20992	chr11	107566964	107567125	+	12.66516	NA	Intergenic	Intergenic	15743	NM_003063	6588	Hs.334629	NM_003063	HPRD:03729	SLN	-	sarcolipin	protein-coding
19-PTNLD28-TUMOR_peak_27660	chr13	30607863	30608112	+	12.66516	NA	Intergenic	Intergenic	97319	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_12252	chr10	18972465	18972625	+	12.66516	NA	Intergenic	Intergenic	24232	NM_178815	221079	Hs.25362	NM_178815	HPRD:12328	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
19-PTNLD28-TUMOR_peak_74617	chr4	15843286	15843444	+	12.66516	NA	intron (NM_001775, intron 7 of 7)	L1HS|LINE|L1	63434	NM_001775	952	Hs.479214	NM_001775		CD38	ADPRC 1|T10	CD38 molecule	protein-coding
19-PTNLD28-TUMOR_peak_46157	chr18	64660876	64660981	+	12.66516	NA	Intergenic	HERVL40-int|LTR|ERVL	-87893	NR_049809	100847002		NR_049809	miRBase:MI0017879	MIR5011	-	microRNA 5011	ncRNA
19-PTNLD28-TUMOR_peak_8074	chr1	168688689	168688828	+	12.66516	NA	intron (NM_001937, intron 1 of 3)	intron (NM_001937, intron 1 of 3)	9684	NM_001937	1805	Hs.80552	NM_001937	HPRD:00510	DPT	TRAMP	dermatopontin	protein-coding
19-PTNLD28-TUMOR_peak_51191	chr2	12427408	12427537	+	12.66516	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	280230	NR_110196	100506457	Hs.197824	NR_110196	ENSG00000224184	LOC100506457	-	uncharacterized LOC100506457	ncRNA
19-PTNLD28-TUMOR_peak_39217	chr16	85746525	85746802	+	12.66516	NA	intron (NM_206967, intron 2 of 3)	MLT1C|LTR|ERVL-MaLR	-24075	NM_016095	51659	Hs.433180	NM_016095		GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_100556	chr8	124751824	124752012	+	12.66516	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-2271	NM_004306	312	Hs.181107	NM_004306	HPRD:03984	ANXA13	ANX13|ISA	annexin A13	protein-coding
19-PTNLD28-TUMOR_peak_62916	chr21	20144823	20145028	+	12.66516	NA	Intergenic	Intergenic	-12795	NR_109925	101927797	Hs.551743	NR_109925		LOC101927797	-	uncharacterized LOC101927797	ncRNA
19-PTNLD28-TUMOR_peak_92205	chr7	43300994	43301165	+	12.66516	NA	intron (NM_015052, intron 3 of 29)	intron (NM_015052, intron 3 of 29)	110585	NR_037508	100500829		NR_037508		MIR3943	-	microRNA 3943	ncRNA
19-PTNLD28-TUMOR_peak_57356	chr2	186289640	186289757	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-313657	NM_173651	401024	Hs.98025	NM_173651	HPRD:13483	FSIP2	-	fibrous sheath interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_6869	chr1	152217209	152217339	+	12.66516	NA	Intergenic	Intergenic	-20602	NM_001009931	388697	Hs.490162	NM_001009931	HPRD:17114	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
19-PTNLD28-TUMOR_peak_99175	chr8	72274411	72274609	+	12.66516	NA	promoter-TSS (NM_000503)	promoter-TSS (NM_000503)	-43	NM_001288574	2138	Hs.491997	NM_000503	HPRD:03388	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_104891	chr9	100631672	100631832	+	12.66516	NA	Intergenic	L3|LINE|CR1	16215	NM_004473	2304	Hs.159234	NM_004473	HPRD:04014	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2	forkhead box E1 (thyroid transcription factor 2)	protein-coding
19-PTNLD28-TUMOR_peak_25753	chr12	98791162	98791268	+	12.66516	NA	Intergenic	Intergenic	59708	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_77203	chr4	140555037	140555173	+	12.66516	NA	Intergenic	HERVK11-int|LTR|ERVK	-31817	NM_001204368	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_107731	chrX	19873792	19874128	+	12.66516	NA	intron (NM_031892, intron 1 of 17)	intron (NM_031892, intron 1 of 17)	31784	NM_031892	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_73218	chr3	190768899	190769083	+	12.66516	NA	Intergenic	Intergenic	-161331	NM_198184	344901	Hs.526794	NM_198184	HPRD:17809	OSTN	MUSCLIN	osteocrin	protein-coding
19-PTNLD28-TUMOR_peak_104340	chr9	89867101	89867229	+	12.66516	NA	Intergenic	Intergenic	103606	NM_001001709	401535	Hs.657740	NM_001001709	HPRD:16988	C9orf170	-	chromosome 9 open reading frame 170	protein-coding
19-PTNLD28-TUMOR_peak_102439	chr9	21265508	21265655	+	12.66516	NA	Intergenic	Intergenic	12981	NR_036676	3453	Hs.545842	NR_036676		IFNA22P	IFNAP22	interferon, alpha 22, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_18315	chr11	45255120	45255251	+	12.66516	NA	3' UTR (NM_001256695, exon 8 of 8)	3' UTR (NM_001256695, exon 8 of 8)	52699	NM_020826	57586	Hs.436643	NM_020826	HPRD:12128	SYT13	-	synaptotagmin XIII	protein-coding
19-PTNLD28-TUMOR_peak_64928	chr22	28231636	28231772	+	12.66516	NA	Intergenic	AluJb|SINE|Alu	-34218	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_57545	chr2	192669500	192669753	+	12.66516	NA	Intergenic	L2c|LINE|L2	42380	NM_004657	8436	Hs.26530	NM_004657	HPRD:09470	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding
19-PTNLD28-TUMOR_peak_33990	chr15	65102259	65102604	+	12.66516	NA	Intergenic	Intergenic	15436	NM_025049	80119	Hs.112160	NM_025049	HPRD:10715	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
19-PTNLD28-TUMOR_peak_100770	chr8	127766977	127767101	+	12.66516	NA	Intergenic	Intergenic	-196328	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_92924	chr7	65771283	65771487	+	12.66516	NA	intron (NM_003596, intron 3 of 5)	L1MEf|LINE|L1	94010	NR_026873	285908	Hs.50755	NM_181722	HPRD:14160	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
19-PTNLD28-TUMOR_peak_38795	chr16	76228665	76228808	+	12.66516	NA	Intergenic	LTR16E2|LTR|ERVL	-82440	NM_033401	85445	Hs.461389	NM_033401	HPRD:13079	CNTNAP4	CASPR4	contactin associated protein-like 4	protein-coding
19-PTNLD28-TUMOR_peak_30867	chr14	67807428	67807600	+	12.66516	NA	intron (NM_015994, intron 7 of 8)	SVA_D|Other|Other	19206	NM_015994	51382	Hs.272630	NM_015994		ATP6V1D	ATP6M|VATD|VMA8	ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	protein-coding
19-PTNLD28-TUMOR_peak_68940	chr3	69969257	69969371	+	12.66516	NA	intron (NM_001184967, intron 2 of 9)	LTR13|LTR|ERVK	-16437	NM_000248	4286	Hs.166017	NM_000248	HPRD:01138	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_100295	chr8	119485265	119485492	+	12.66516	NA	intron (NR_109794, intron 2 of 4)	LTR33A|LTR|ERVL	-147862	NR_038210	552860	Hs.571527	NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41819	chr17	43495966	43496124	+	12.66516	NA	intron (NM_001282290, intron 1 of 16)	intron (NM_001282290, intron 1 of 16)	6967	NM_199282	201176	Hs.205326	NM_174919	HPRD:12477	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
19-PTNLD28-TUMOR_peak_37931	chr16	55586638	55586848	+	12.66516	NA	intron (NM_017839, intron 11 of 13)	Tigger1|DNA|TcMar-Tigger	-13841	NM_032330	84290	Hs.660027	NM_032330	HPRD:16682	CAPNS2	-	calpain, small subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_68653	chr3	59804377	59804561	+	12.66516	NA	intron (NM_001166243, intron 8 of 9)	intron (NM_001166243, intron 8 of 9)	-768754	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_110026	chrX	154146372	154146646	+	12.66516	NA	intron (NM_000132, intron 14 of 25)	L1MA4|LINE|L1	-30776	NR_036260	100422977		NR_036260	miRBase:MI0015972	MIR1184-3	-	microRNA 1184-3	ncRNA
19-PTNLD28-TUMOR_peak_69352	chr3	97438166	97438274	+	12.66516	NA	intron (NM_001080448, intron 14 of 17)	intron (NM_001080448, intron 14 of 17)	-45145	NM_001278293	84100	Hs.373801	NM_032146	HPRD:10588	ARL6	BBS3|RP55	ADP-ribosylation factor-like 6	protein-coding
19-PTNLD28-TUMOR_peak_32024	chr14	100351790	100351929	+	12.66516	NA	intron (NM_001008707, intron 5 of 22)	intron (NM_001008707, intron 5 of 22)	92114	NM_001008707	2009	Hs.12451	NM_004434	HPRD:03613	EML1	ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_91766	chr7	28595772	28596048	+	12.66516	NA	intron (NM_182898, intron 4 of 10)	intron (NM_182898, intron 4 of 10)	120676	NM_004904	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_2669	chr1	40105283	40105773	+	12.66516	NA	promoter-TSS (NM_014571)	promoter-TSS (NM_014571)	-180	NM_014571	26508	Hs.472566	NM_014571	HPRD:16419	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes-related family bHLH transcription factor with YRPW motif-like	protein-coding
19-PTNLD28-TUMOR_peak_70294	chr3	124070696	124070840	+	12.66516	NA	intron (NM_001024660, intron 10 of 59)	intron (NM_001024660, intron 10 of 59)	-22411	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_74947	chr4	38070940	38071064	+	12.66516	NA	intron (NM_001253912, intron 14 of 20)	intron (NM_001253912, intron 14 of 20)	-40800	NM_001253913	23216	Hs.176503	NM_015173	HPRD:18161	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_17365	chr11	14395952	14396152	+	12.66516	NA	Intergenic	Intergenic	-10000	NM_001177314	22800	Hs.502004	NM_012250	HPRD:02518	RRAS2	TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
19-PTNLD28-TUMOR_peak_107776	chrX	21857588	21857806	+	12.66516	NA	promoter-TSS (NM_015884)	promoter-TSS (NM_015884)	41	NM_015884	51360	Hs.443490	NM_015884	HPRD:02243	MBTPS2	BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P	membrane-bound transcription factor peptidase, site 2	protein-coding
19-PTNLD28-TUMOR_peak_12242	chr10	18279394	18279564	+	12.66516	NA	intron (NM_152725, intron 7 of 11)	intron (NM_152725, intron 7 of 11)	20012	NR_038419	100129213	Hs.568816	NR_038419	ENSG00000226083	SLC39A12-AS1	-	SLC39A12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37804	chr16	51573005	51573153	+	12.66516	NA	Intergenic	Intergenic	-223351	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LOC101927364	-	uncharacterized LOC101927364	ncRNA
19-PTNLD28-TUMOR_peak_27800	chr13	34429558	34429738	+	12.66516	NA	intron (NM_181558, intron 8 of 8)	L1PA13|LINE|L1	37442	NM_181558	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_24050	chr12	48415701	48415970	+	12.66516	NA	Intergenic	Intergenic	-17550	NM_033150	1280	Hs.408182	NM_001844	HPRD:00361	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen, type II, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_3919	chr1	61438515	61438659	+	12.66516	NA	Intergenic	Intergenic	-2139	NR_110618	100996570	Hs.46616	NR_110617		NFIA-AS2	-	NFIA antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_101959	chr9	2094287	2094433	+	12.66516	NA	intron (NM_001289397, intron 19 of 32)	intron (NM_001289397, intron 19 of 32)	-63320	NM_001289398	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_78409	chr4	187263898	187264033	+	12.66516	NA	intron (NR_033900, intron 1 of 3)	AluJr|SINE|Alu	76847	NM_000128	2160	Hs.1430	NM_000128	HPRD:07524	F11	FXI	coagulation factor XI	protein-coding
19-PTNLD28-TUMOR_peak_76314	chr4	95868930	95869089	+	12.66516	NA	intron (NM_001203, intron 2 of 12)	intron (NM_001203, intron 2 of 12)	-48374	NM_001256792	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_21951	chr11	126253036	126253201	+	12.66516	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	-20193	NM_001254758	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_67139	chr3	23430641	23430902	+	12.66516	NA	intron (NR_039621, intron 1 of 2)	intron (NR_039621, intron 1 of 2)	55145	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	ncRNA
19-PTNLD28-TUMOR_peak_25571	chr12	92707816	92707986	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-107406	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_24493	chr12	53955518	53955664	+	12.66516	NA	intron (NR_073163, intron 2 of 12)	intron (NR_073163, intron 2 of 12)	47823	NR_046221	100652999	Hs.633602	NR_046221	ENSG00000257550	LOC100652999	-	uncharacterized LOC100652999	ncRNA
19-PTNLD28-TUMOR_peak_32601	chr15	24300115	24300281	+	12.66516	NA	Intergenic	Intergenic	114855	NR_026647	791115	Hs.560378	NR_026647	ENSG00000260551	PWRN2	NCRNA00199	Prader-Willi region non-protein coding RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_77579	chr4	152147531	152147699	+	12.66516	NA	promoter-TSS (NM_001128923)	promoter-TSS (NM_001128923)	45	NM_001009555	152503	Hs.744983	NM_001009555	HPRD:16364	SH3D19	EBP|EVE1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
19-PTNLD28-TUMOR_peak_3791	chr1	58740492	58740639	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-24354	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_103880	chr9	76151430	76151596	+	12.66516	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	384732	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_69213	chr3	81519796	81519984	+	12.66516	NA	Intergenic	Intergenic	291060	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_33468	chr15	46868932	46869047	+	12.66516	NA	Intergenic	Intergenic	-607414	NM_001198999	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_70503	chr3	126530483	126530607	+	12.66516	NA	intron (NM_032343, intron 4 of 7)	intron (NM_032343, intron 4 of 7)	107482	NM_032343	84303	Hs.518119	NM_032343	HPRD:13047	CHCHD6	CHCM1|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_81359	chr5	100778239	100778349	+	12.66516	NA	Intergenic	L1PA4|LINE|L1	-539305	NM_175052	7903	Hs.308628	NM_005668	HPRD:03970	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_105388	chr9	113194541	113194884	+	12.66516	NA	intron (NM_153366, intron 31 of 47)	intron (NM_153366, intron 31 of 47)	-94548	NM_001286947	255220	Hs.147064	NM_001003936	HPRD:18251	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
19-PTNLD28-TUMOR_peak_31736	chr14	92874627	92874744	+	12.66516	NA	intron (NM_153647, intron 3 of 17)	intron (NM_153647, intron 3 of 17)	84533	NM_153646	123041	Hs.385530	NM_153646		SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding
19-PTNLD28-TUMOR_peak_52272	chr2	39761370	39761524	+	12.66516	NA	intron (NR_037875, intron 5 of 5)	intron (NR_037875, intron 5 of 5)	96890	NR_037875	728730	Hs.655344	NR_037875	ENSG00000231312	LOC728730	-	uncharacterized LOC728730	ncRNA
19-PTNLD28-TUMOR_peak_20553	chr11	91655287	91655471	+	12.66516	NA	Intergenic	Intergenic	-429883	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_54863	chr2	110907554	110907730	+	12.66516	NA	intron (NM_207181, intron 12 of 19)	intron (NM_207181, intron 12 of 19)	-33499	NM_005434	7851	Hs.185055	NM_005434	HPRD:15997	MALL	BENE	mal, T-cell differentiation protein-like	protein-coding
19-PTNLD28-TUMOR_peak_56784	chr2	166555155	166555404	+	12.66516	NA	Intergenic	Intergenic	95524	NM_004482	2591	Hs.170986	NM_004482	HPRD:03453	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_102177	chr9	11934077	11934244	+	12.66516	NA	Intergenic	Intergenic	-759226	NM_000550	7306	Hs.270279	NM_000550	HPRD:00283	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58054	chr2	207998723	207998938	+	12.66516	NA	promoter-TSS (NM_001270944)	promoter-TSS (NM_001270944)	31	NM_001270944	8609	Hs.59908	NM_003709	HPRD:07279	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_3781	chr1	58262333	58262528	+	12.66516	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	-63785	NR_104363	101926890	Hs.662207	NR_104362		DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109249	chrX	116104248	116104351	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-510105	NM_001017978	203413	Hs.97892	NM_001017978	HPRD:18577	CT83	CXorf61|KK-LC-1|KKLC1	cancer/testis antigen 83	protein-coding
19-PTNLD28-TUMOR_peak_22020	chr11	127965650	127965817	+	12.66516	NA	Intergenic	ERVL-B4-int|LTR|ERVL	426472	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_85776	chr6	19221490	19221601	+	12.66516	NA	Intergenic	L1PA4|LINE|L1	-40834	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_27190	chr12	131232806	131232919	+	12.66516	NA	Intergenic	Intergenic	90957	NM_194356	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_72127	chr3	161206217	161206393	+	12.66516	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-8291	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
19-PTNLD28-TUMOR_peak_62551	chr20	61585636	61585915	+	12.66516	NA	intron (NM_022082, intron 1 of 12)	intron (NM_022082, intron 1 of 12)	1776	NM_022082	63910	Hs.512686	NM_022082	HPRD:12777	SLC17A9	C20orf59|VNUT	solute carrier family 17 (vesicular nucleotide transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_33474	chr15	47488326	47488512	+	12.66516	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	12016	NM_001198999	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_92984	chr7	67343372	67343525	+	12.66516	NA	Intergenic	LTR9|LTR|ERV1	-141792	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_59882	chr20	14122895	14123051	+	12.66516	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	146827	NM_080676	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45977	chr18	56737713	56737972	+	12.66516	NA	Intergenic	Intergenic	34871	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_38433	chr16	68623279	68623375	+	12.66516	NA	Intergenic	L1HS|LINE|L1	49666	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_75521	chr4	62637969	62638076	+	12.66516	NA	intron (NM_015236, intron 5 of 22)	MER34B-int|LTR|ERV1	275183	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_8965	chr1	191577573	191577737	+	12.66516	NA	Intergenic	LTR18B|LTR|ERVL	-549937	NM_130782	64407	Hs.440890	NM_130782	HPRD:06224	RGS18	RGS13	regulator of G-protein signaling 18	protein-coding
19-PTNLD28-TUMOR_peak_69347	chr3	96661020	96661141	+	12.66516	NA	intron (NM_001080448, intron 2 of 17)	L1PA4|LINE|L1	127655	NM_001278301	285220	Hs.653244	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
19-PTNLD28-TUMOR_peak_67336	chr3	30311625	30311804	+	12.66516	NA	Intergenic	LTR16C|LTR|ERVL	-336067	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90204	chr6	157390850	157391025	+	12.66516	NA	intron (NM_020732, intron 5 of 19)	intron (NM_020732, intron 5 of 19)	-290072	NR_039676	100616154		NR_039676	miRBase:MI0016817	MIR4466	-	microRNA 4466	ncRNA
19-PTNLD28-TUMOR_peak_23637	chr12	31671767	31672009	+	12.66516	NA	intron (NM_144973, intron 1 of 20)	intron (NM_144973, intron 1 of 20)	-70969	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	-	DENND5B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69239	chr3	85210765	85211000	+	12.66516	NA	intron (NM_001167674, intron 1 of 9)	intron (NM_001167674, intron 1 of 9)	202749	NM_001167674	253559	Hs.164578	NM_153184	HPRD:11046	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_96113	chr7	144224145	144224255	+	12.66516	NA	intron (NM_022445, intron 8 of 8)	intron (NM_022445, intron 8 of 8)	-116880	NM_001080413	135935	Hs.558628	NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
19-PTNLD28-TUMOR_peak_81999	chr5	127639975	127640088	+	12.66516	NA	intron (NM_001999, intron 45 of 64)	intron (NM_001999, intron 45 of 64)	220548	NR_046207	6558	Hs.162585	NM_001046	HPRD:06775	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_51342	chr2	17232893	17233196	+	12.66516	NA	Intergenic	Intergenic	-385910	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_28342	chr13	53499483	53499619	+	12.66516	NA	Intergenic	Intergenic	-76776	NM_002590	5100	Hs.19492	NM_002590	HPRD:04660	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
19-PTNLD28-TUMOR_peak_17553	chr11	19231293	19231447	+	12.66516	NA	intron (NM_003476, intron 1 of 6)	L2c|LINE|L2	748	NM_003476	8048	Hs.83577	NM_003476	HPRD:07525	CSRP3	CLP|CMD1M|CMH12|CRP3|LMO4|MLP	cysteine and glycine-rich protein 3 (cardiac LIM protein)	protein-coding
19-PTNLD28-TUMOR_peak_69475	chr3	101621005	101621148	+	12.66516	NA	Intergenic	Intergenic	-38627	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_34228	chr15	69841289	69841406	+	12.66516	NA	Intergenic	Intergenic	-12712	NR_026979	145837	Hs.410126	NR_026979		LOC145837	-	uncharacterized LOC145837	ncRNA
19-PTNLD28-TUMOR_peak_97940	chr8	28874834	28874963	+	12.66516	NA	intron (NM_024567, intron 6 of 10)	MLT1G|LTR|ERVL-MaLR	126673	NM_024567	79618	Hs.563560	NM_024567	HPRD:07964	HMBOX1	HNF1LA|HOT1|PBHNF	homeobox containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83338	chr5	152885625	152885863	+	12.66516	NA	intron (NM_001258019, intron 2 of 14)	intron (NM_001258019, intron 2 of 14)	14012	NM_001258022	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_21521	chr11	118740909	118741092	+	12.66516	NA	Intergenic	Intergenic	-13475	NM_001716	643	Hs.113916	NM_001716		CXCR5	BLR1|CD185|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_106382	chr9	132464943	132465128	+	12.66516	NA	intron (NM_016307, intron 1 of 3)	intron (NM_016307, intron 1 of 3)	37115	NM_016307	51450	Hs.660115	NM_016307	HPRD:05244	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_30702	chr14	62593717	62593828	+	12.66516	NA	intron (NR_015358, intron 2 of 3)	intron (NR_015358, intron 2 of 3)	9697	NR_015358	646113	Hs.445241	NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
19-PTNLD28-TUMOR_peak_80194	chr5	61180433	61180626	+	12.66516	NA	Intergenic	Intergenic	-149004	NR_105000	100506526	Hs.662277	NR_105000	ENSG00000251575	LOC100506526	-	uncharacterized LOC100506526	ncRNA
19-PTNLD28-TUMOR_peak_33187	chr15	40812074	40812364	+	12.66516	NA	Intergenic	Intergenic	12530	NR_002208	359821	Hs.678598	NR_002208		MRPL42P5	-	mitochondrial ribosomal protein L42 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_25971	chr12	105670339	105670485	+	12.66516	NA	Intergenic	L2b|LINE|L2	-40404	NM_001251904	55198	Hs.506603	NM_018171	HPRD:06945	APPL2	DIP13B	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding
19-PTNLD28-TUMOR_peak_53215	chr2	67517063	67517350	+	12.66516	NA	TTS (NR_110564)	TTS (NR_110564)	-74755	NR_038844	644838	Hs.145561	NR_038844	ENSG00000236780	LOC644838	-	uncharacterized LOC644838	ncRNA
19-PTNLD28-TUMOR_peak_57517	chr2	192251738	192251932	+	12.66516	NA	intron (NM_001130158, intron 16 of 30)	intron (NM_001130158, intron 16 of 30)	141581	NM_001161819	4430	Hs.439620	NM_012223	HPRD:08407	MYO1B	myr1	myosin IB	protein-coding
19-PTNLD28-TUMOR_peak_30022	chr14	40795454	40795636	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-628371	NR_109758	644919	Hs.434414	NR_109757		LOC644919	-	uncharacterized LOC644919	ncRNA
19-PTNLD28-TUMOR_peak_108852	chrX	83005960	83006098	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	-110105	NM_021118	1538	Hs.444230	NM_021118	ENSG00000183035	CYLC1	CYCL1	cylicin, basic protein of sperm head cytoskeleton 1	protein-coding
19-PTNLD28-TUMOR_peak_45850	chr18	53665349	53665580	+	12.66516	NA	Intergenic	Intergenic	-78034	NR_110755	101927273	Hs.434335	NR_110755	ENSG00000260930	LOC101927273	-	uncharacterized LOC101927273	ncRNA
19-PTNLD28-TUMOR_peak_13762	chr10	61457260	61457358	+	12.66516	NA	intron (NM_194298, intron 1 of 5)	SVA_D|Other|Other	12340	NM_194298	220963	Hs.499709	NM_194298	HPRD:15348	SLC16A9	C10orf36|MCT9	solute carrier family 16, member 9	protein-coding
19-PTNLD28-TUMOR_peak_28122	chr13	46381808	46381945	+	12.66516	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	43970	NM_198849	283514	Hs.368483	NM_198849	HPRD:14145	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_69433	chr3	99787749	99787903	+	12.66516	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	45531	NM_182909	11259	Hs.104672	NM_014890	HPRD:16832	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_4564	chr1	84867870	84868111	+	12.66516	NA	intron (NM_021233, intron 2 of 5)	intron (NM_021233, intron 2 of 5)	3775	NM_021233	58511	Hs.129142	NM_021233	HPRD:09728	DNASE2B	DLAD	deoxyribonuclease II beta	protein-coding
19-PTNLD28-TUMOR_peak_28365	chr13	56925396	56925497	+	12.66516	NA	Intergenic	Intergenic	-789606	NM_001130404	729233	Hs.723090	NM_001130404	ENSG00000204918	PRR20B	-	proline rich 20B	protein-coding
19-PTNLD28-TUMOR_peak_67469	chr3	34131455	34131553	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	291441	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_41327	chr17	38020384	38020611	+	12.66516	NA	promoter-TSS (NM_183230)	promoter-TSS (NM_183230)	-56	NM_012481	22806	Hs.371680	NM_012481		IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3 (Aiolos)	protein-coding
19-PTNLD28-TUMOR_peak_51379	chr2	18701853	18702094	+	12.66516	NA	Intergenic	Intergenic	39986	NM_020905	57665	Hs.120319	NM_020905	HPRD:10190	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_73238	chr3	191619660	191619834	+	12.66516	NA	Intergenic	L2c|LINE|L2	-336672	NR_046596	100873986	Hs.581652	NR_046596		FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21476	chr11	118023593	118023706	+	12.66516	NA	promoter-TSS (NM_001142348)	promoter-TSS (NM_001142348)	-19	NM_001142348	6330	Hs.65239	NM_174934	HPRD:09749	SCN4B	ATFB17|LQT10|Navbeta4	sodium channel, voltage-gated, type IV, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_59915	chr20	15599621	15599803	+	12.66516	NA	intron (NM_080676, intron 8 of 16)	LTR8|LTR|ERV1	422208	NM_001033087	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_81109	chr5	90345734	90345867	+	12.66516	NA	intron (NR_003149, intron 85 of 89)	intron (NR_003149, intron 85 of 89)	264419	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_24215	chr12	51053611	51053730	+	12.66516	NA	intron (NM_173602, intron 3 of 37)	intron (NM_173602, intron 3 of 37)	-104119	NM_005171	466	Hs.648565	NM_005171	HPRD:00440	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_62802	chr21	16236787	16236956	+	12.66516	NA	Intergenic	Intergenic	200255	NM_003489	8204	Hs.155017	NM_003489	HPRD:03927	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_86568	chr6	31062338	31062546	+	12.66516	NA	Intergenic	Intergenic	17890	NM_014070	29113	Hs.272214	NM_014070	HPRD:12856	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_92621	chr7	55094902	55095059	+	12.66516	NA	intron (NM_201284, intron 1 of 15)	intron (NM_201284, intron 1 of 15)	8255	NM_005228	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_74760	chr4	23924280	23924446	+	12.66516	NA	Intergenic	Intergenic	-32663	NM_013261	10891	Hs.527078	NM_013261	HPRD:05155	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_76064	chr4	84692408	84692522	+	12.66516	NA	Intergenic	Intergenic	234995	NM_032717	84803	Hs.99196	NM_032717	HPRD:14417	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
19-PTNLD28-TUMOR_peak_67497	chr3	36414726	36414889	+	12.66516	NA	Intergenic	Intergenic	-7172	NM_001292049	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_109082	chrX	106389995	106390159	+	12.66516	NA	intron (NR_033676, intron 6 of 6)	L1MC4|LINE|L1	-28020	NM_001171080	55285	Hs.139053	NM_018301		RBM41	-	RNA binding motif protein 41	protein-coding
19-PTNLD28-TUMOR_peak_69211	chr3	81298779	81299059	+	12.66516	NA	Intergenic	MER58A|DNA|hAT-Charlie	512031	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_91550	chr7	22143336	22143577	+	12.66516	NA	Intergenic	Intergenic	-157914	NM_001127370	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_100106	chr8	111038835	111038968	+	12.66516	NA	Intergenic	Intergenic	-51942	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_88929	chr6	105669085	105669432	+	12.66516	NA	Intergenic	HERVL-int|LTR|ERVL	-41400	NM_022361	64208	Hs.458336	NM_022361		POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_88371	chr6	75316520	75316705	+	12.66516	NA	intron (NR_110856, intron 2 of 3)	intron (NR_110856, intron 2 of 3)	537445	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_67676	chr3	40949179	40949422	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	-291642	NM_001904	1499	Hs.476018	NM_001904	HPRD:00286	CTNNB1	CTNNB|MRD19|armadillo	catenin (cadherin-associated protein), beta 1, 88kDa	protein-coding
19-PTNLD28-TUMOR_peak_10843	chr1	231739624	231739954	+	12.66516	NA	intron (NR_034037, intron 1 of 1)	intron (NR_034037, intron 1 of 1)	8047	NR_034037	100287814	Hs.25555	NR_034037	ENSG00000229228	LINC00582	-	long intergenic non-protein coding RNA 582	ncRNA
19-PTNLD28-TUMOR_peak_31143	chr14	71299499	71299619	+	12.66516	NA	Intergenic	Intergenic	-23671	NM_033141	4293	Hs.445496	NM_033141	HPRD:15965	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_74429	chr4	9468707	9468895	+	12.66516	NA	Intergenic	Intergenic	22541	NM_001040448	644414	Hs.590200	NM_001040448	ENSG00000186146	DEFB131	DEFB-31	defensin, beta 131	protein-coding
19-PTNLD28-TUMOR_peak_97392	chr8	18918887	18919023	+	12.66516	NA	Intergenic	Intergenic	-47759	NM_015310	23362	Hs.434255	NM_015310	HPRD:11462	PSD3	EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_72141	chr3	162955177	162955320	+	12.66516	NA	intron (NR_033945, intron 2 of 6)	L1HS|LINE|L1	65841	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_28133	chr13	46615510	46615755	+	12.66516	NA	intron (NM_015070, intron 4 of 16)	L1MB8|LINE|L1	11264	NM_015070	23091	Hs.136102	NM_015070	HPRD:08307	ZC3H13	KIAA0853	zinc finger CCCH-type containing 13	protein-coding
19-PTNLD28-TUMOR_peak_57865	chr2	203043183	203043314	+	12.66516	NA	intron (NM_001277372, intron 15 of 21)	intron (NM_001277372, intron 15 of 21)	60074	NM_001005782	7341	Hs.81424	NM_003352	HPRD:03554	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin-like modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_16454	chr11	250873	250983	+	12.66516	NA	intron (NM_002817, intron 10 of 12)	intron (NM_002817, intron 10 of 12)	14120	NM_175932	5719	Hs.134688	NM_002817	HPRD:04595	PSMD13	HSPC027|Rpn9|S11|p40.5	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding
19-PTNLD28-TUMOR_peak_56405	chr2	154576343	154576559	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-151975	NM_052917	114805	Hs.470277	NM_052917	HPRD:16325	GALNT13	GalNAc-T13	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
19-PTNLD28-TUMOR_peak_63291	chr21	35554817	35554950	+	12.66516	NA	intron (NR_027266, intron 1 of 1)	LTR16E2|LTR|ERVL	1905	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
19-PTNLD28-TUMOR_peak_22587	chr12	4216645	4216776	+	12.66516	NA	Intergenic	Intergenic	-166192	NM_001759	894	Hs.376071	NM_001759	HPRD:00451	CCND2	KIAK0002	cyclin D2	protein-coding
19-PTNLD28-TUMOR_peak_2283	chr1	34936076	34936260	+	12.66516	NA	Intergenic	L3|LINE|CR1	-284480	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_4820	chr1	90968369	90968537	+	12.66516	NA	Intergenic	MIRc|SINE|MIR	214341	NM_020063	343472	Hs.451956	NM_020063		BARHL2	-	BarH-like homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_20786	chr11	100280290	100280413	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-278056	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_98374	chr8	40947922	40948059	+	12.66516	NA	Intergenic	Intergenic	-192647	NM_001135731	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_92639	chr7	55305178	55305398	+	12.66516	NA	TTS (NR_110426)	TTS (NR_110426)	18040	NR_110426	102725541	Hs.590524	NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
19-PTNLD28-TUMOR_peak_49315	chr19	45105428	45105714	+	12.66516	NA	Intergenic	LTR9|LTR|ERV1	-11369	NM_001205280	147710	Hs.512509	NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily, member 23	protein-coding
19-PTNLD28-TUMOR_peak_51551	chr2	23980681	23980788	+	12.66516	NA	exon (NM_017552, exon 25 of 28)	exon (NM_017552, exon 25 of 28)	169250	NR_125717	54454	Hs.467862	NM_017552	ENSG00000119778	ATAD2B	-	ATPase family, AAA domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_108880	chrX	87068500	87068890	+	12.66516	NA	Intergenic	L2c|LINE|L2	295980	NM_057162	56062	Hs.49075	NM_019117	HPRD:02283	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_20530	chr11	89867794	89868146	+	12.66516	NA	exon (NM_005467, exon 1 of 19)	exon (NM_005467, exon 1 of 19)	152	NM_005467	10003	Hs.503560	NM_005467	HPRD:07494	NAALAD2	GCPIII|GPCIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_31543	chr14	82413554	82413711	+	12.66516	NA	Intergenic	Intergenic	-324227	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
19-PTNLD28-TUMOR_peak_108910	chrX	92528366	92528621	+	12.66516	NA	Intergenic	LTR14C|LTR|ERVK	400189	NM_004538	4675	Hs.21365	NM_004538	HPRD:02123	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_69548	chr3	106176176	106176377	+	12.66516	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-588389	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_93857	chr7	89891887	89892016	+	12.66516	NA	intron (NM_001160138, intron 4 of 22)	intron (NM_001160138, intron 4 of 22)	17463	NM_001160138	79846	Hs.657403	NM_024788	HPRD:08633	CFAP69	C7orf63|FAP69	cilia and flagella associated protein 69	protein-coding
19-PTNLD28-TUMOR_peak_44796	chr18	19406250	19406519	+	12.66516	NA	promoter-TSS (NR_029675)	promoter-TSS (NR_029675)	-638	NR_029675	406922		NR_029675	miRBase:MI0000450	MIR133A1	MIRN133A1	microRNA 133a-1	ncRNA
19-PTNLD28-TUMOR_peak_78130	chr4	177760020	177760250	+	12.66516	NA	Intergenic	Intergenic	-46236	NM_005429	7424	Hs.435215	NM_005429	HPRD:03317	VEGFC	Flt4-L|LMPH1D|VRP	vascular endothelial growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_108922	chrX	94117829	94117980	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	1188892	NM_001171111	286499	Hs.110069	NM_173698	HPRD:06562	FAM133A	CT115	family with sequence similarity 133, member A	protein-coding
19-PTNLD28-TUMOR_peak_104169	chr9	85949263	85949467	+	12.66516	NA	intron (NM_001244960, intron 6 of 13)	intron (NM_001244960, intron 6 of 13)	-2489	NM_001244961	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_29682	chr14	29685194	29685383	+	12.66516	NA	Intergenic	Intergenic	443378	NR_026731	387978	Hs.633254	NR_026731	ENSG00000186960	C14orf23	c14_5148	chromosome 14 open reading frame 23	ncRNA
19-PTNLD28-TUMOR_peak_93665	chr7	80790747	80790932	+	12.66516	NA	Intergenic	Intergenic	-242172	NM_006379	10512	Hs.269109	NM_006379	HPRD:04034	SEMA3C	SEMAE|SemE	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
19-PTNLD28-TUMOR_peak_89296	chr6	121765482	121765748	+	12.66516	NA	intron (NM_000165, intron 1 of 1)	intron (NM_000165, intron 1 of 1)	8892	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_7518	chr1	159544312	159544445	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	-13238	NM_001639	325	Hs.507080	NM_001639	HPRD:00101	APCS	HEL-S-92n|PTX2|SAP	amyloid P component, serum	protein-coding
19-PTNLD28-TUMOR_peak_93009	chr7	67888442	67888643	+	12.66516	NA	Intergenic	AluJo|SINE|Alu	403302	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_14915	chr10	93982781	93982924	+	12.66516	NA	intron (NM_014912, intron 2 of 9)	intron (NM_014912, intron 2 of 9)	20184	NM_001178137	22849	Hs.131683	NM_014912	HPRD:16745	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_35126	chr15	89532921	89533066	+	12.66516	NA	Intergenic	Intergenic	-76330	NM_001114614	4240	Hs.3745	NM_005928	HPRD:03789	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule-EGF factor 8 protein	protein-coding
19-PTNLD28-TUMOR_peak_107386	chrX	2645350	2645633	+	12.66516	NA	intron (NM_001122898, intron 7 of 8)	intron (NM_001122898, intron 7 of 8)	-24602	NM_001141919	7499	Hs.179675	NM_175569	HPRD:02443	XG	PBDX	Xg blood group	protein-coding
19-PTNLD28-TUMOR_peak_4451	chr1	78289922	78290022	+	12.66516	NA	intron (NM_001270384, intron 7 of 15)	AluJr4|SINE|Alu	44663	NM_198549	374986	Hs.437755	NM_198549	HPRD:13415	FAM73A	-	family with sequence similarity 73, member A	protein-coding
19-PTNLD28-TUMOR_peak_473	chr1	7962948	7963071	+	12.66516	NA	Intergenic	Intergenic	40216	NM_001561	3604	Hs.86447	NM_001561		TNFRSF9	4-1BB|CD137|CDw137|ILA	tumor necrosis factor receptor superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_88257	chr6	72085398	72085719	+	12.66516	NA	Intergenic	Intergenic	1176	NR_029598	407032		NR_029598	miRBase:MI0000254	MIR30C2	MIRN30C2	microRNA 30c-2	ncRNA
19-PTNLD28-TUMOR_peak_30907	chr14	68410724	68410903	+	12.66516	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	124317	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_91939	chr7	33231076	33231203	+	12.66516	NA	intron (NM_198428, intron 5 of 22)	intron (NM_198428, intron 5 of 22)	61987	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_25086	chr12	66997381	66997486	+	12.66516	NA	intron (NM_021150, intron 1 of 23)	intron (NM_021150, intron 1 of 23)	75492	NM_001178074	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_135	chr1	1259792	1260429	+	12.66516	NA	promoter-TSS (NM_017871)	promoter-TSS (NM_017871)	-33	NM_001029885	80772	Hs.515689	NM_001029885	ENSG00000224051	CPTP	GLTPD1	ceramide-1-phosphate transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_69358	chr3	97671847	97672023	+	12.66516	NA	intron (NM_001261829, intron 5 of 9)	L2c|LINE|L2	19360	NM_001261829	84864	Hs.570562	NM_032778	HPRD:17575	MINA	MDIG|MINA53|NO52|ROX	MYC induced nuclear antigen	protein-coding
19-PTNLD28-TUMOR_peak_91892	chr7	32088690	32088819	+	12.66516	NA	intron (NM_001191058, intron 3 of 18)	intron (NM_001191058, intron 3 of 18)	21720	NM_001191057	5137	Hs.728862	NM_005020	HPRD:04287	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C, calmodulin-dependent 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_67591	chr3	39106834	39106951	+	12.66516	NA	intron (NM_020839, intron 2 of 18)	intron (NM_020839, intron 2 of 18)	13385	NM_020839	57599	Hs.109778	NM_020839	HPRD:11146	WDR48	P80|SPG60|UAF1	WD repeat domain 48	protein-coding
19-PTNLD28-TUMOR_peak_107635	chrX	15598202	15598692	+	12.66516	NA	intron (NM_021804, intron 9 of 18)	LTR16A1|LTR|ERVL	21745	NM_021804	59272	Hs.178098	NM_021804	HPRD:02274	ACE2	ACEH	angiotensin I converting enzyme 2	protein-coding
19-PTNLD28-TUMOR_peak_23282	chr12	17262200	17262337	+	12.66516	NA	Intergenic	Intergenic	120587	NR_036619	728622	Hs.741380	NR_036619		SKP1P2	SKP1B|p19B	S-phase kinase-associated protein 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_108076	chrX	44047267	44047376	+	12.66516	NA	intron (NM_025184, intron 11 of 14)	AluJo|SINE|Alu	155602	NM_025184	80258	Hs.521953	NM_025184		EFHC2	MRX74|dJ1158H2.1	EF-hand domain (C-terminal) containing 2	protein-coding
19-PTNLD28-TUMOR_peak_63099	chr21	31588413	31588930	+	12.66516	NA	promoter-TSS (NM_199328)	promoter-TSS (NM_199328)	-202	NM_199328	9073	Hs.162209	NM_012132	HPRD:10835	CLDN8	-	claudin 8	protein-coding
19-PTNLD28-TUMOR_peak_74531	chr4	11559523	11559646	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	-129047	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_18687	chr11	57684338	57684487	+	12.66516	NA	Intergenic	Intergenic	-106941	NM_001005212	219956	Hs.689841	NM_001005212	HPRD:17800	OR9Q1	-	olfactory receptor, family 9, subfamily Q, member 1	protein-coding
19-PTNLD28-TUMOR_peak_100138	chr8	113623828	113623973	+	12.66516	NA	intron (NM_198124, intron 23 of 71)	intron (NM_198124, intron 23 of 71)	-31822	NR_031745	100302225		NR_031745	miRBase:MI0010487	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA
19-PTNLD28-TUMOR_peak_88594	chr6	86064815	86064945	+	12.66516	NA	Intergenic	Intergenic	-94422	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_91825	chr7	30107863	30108000	+	12.66516	NA	intron (NM_032639, intron 12 of 12)	L1ME3C|LINE|L1	39954	NM_001197027	84725	Hs.233495	NM_032639	HPRD:10555	PLEKHA8	FAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding
19-PTNLD28-TUMOR_peak_72126	chr3	161193858	161193967	+	12.66516	NA	Intergenic	Intergenic	-20684	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
19-PTNLD28-TUMOR_peak_107462	chrX	7170246	7170497	+	12.66516	NA	intron (NM_000351, intron 1 of 9)	intron (NM_000351, intron 1 of 9)	32899	NM_000351	412	Hs.522578	NM_000351	HPRD:02389	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase (microsomal), isozyme S	protein-coding
19-PTNLD28-TUMOR_peak_42466	chr17	55139196	55139417	+	12.66516	NA	Intergenic	AluY|SINE|Alu	16467	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_3401	chr1	49283327	49283489	+	12.66516	NA	intron (NM_032785, intron 6 of 13)	intron (NM_032785, intron 6 of 13)	-40861	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_4596	chr1	85401967	85402129	+	12.66516	NA	intron (NM_153259, intron 11 of 13)	intron (NM_153259, intron 11 of 13)	-43152	NM_012152	23566	Hs.674915	NM_012152	HPRD:05486	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_31977	chr14	99413534	99413649	+	12.66516	NA	Intergenic	Intergenic	235641	NM_182560	283598	Hs.448754	NM_182560	HPRD:08075	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_25384	chr12	76864468	76864574	+	12.66516	NA	intron (NM_020841, intron 2 of 23)	intron (NM_020841, intron 2 of 23)	89068	NM_020841	114882	Hs.430849	NM_020841	HPRD:09478	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein-like 8	protein-coding
19-PTNLD28-TUMOR_peak_45407	chr18	42217620	42217731	+	12.66516	NA	Intergenic	Intergenic	-42463	NM_001130110	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21044	chr11	108854461	108854641	+	12.66516	NA	Intergenic	MER5B|DNA|hAT-Charlie	318799	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_107912	chrX	35240041	35240172	+	12.66516	NA	Intergenic	L1HS|LINE|L1	279193	NM_152631	170062	Hs.197801	NM_152631	HPRD:06559	FAM47B	-	family with sequence similarity 47, member B	protein-coding
19-PTNLD28-TUMOR_peak_21185	chr11	112239266	112239372	+	12.66516	NA	Intergenic	Intergenic	-107736	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_107428	chrX	4100159	4100290	+	12.66516	NA	Intergenic	MER41B|LTR|ERV1	-338289	NR_034031	389906	Hs.636199	NR_034031		LOC389906	-	zinc finger protein 839 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_57546	chr2	192677001	192677147	+	12.66516	NA	Intergenic	Intergenic	34932	NM_004657	8436	Hs.26530	NM_004657	HPRD:09470	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding
19-PTNLD28-TUMOR_peak_54821	chr2	110473054	110473173	+	12.66516	NA	Intergenic	MER21C|LTR|ERVL	-77222	NM_032260	84220	Hs.469630	NM_005054	HPRD:04128	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_66838	chr3	14574285	14574435	+	12.66516	NA	intron (NM_001080423, intron 1 of 23)	intron (NM_001080423, intron 1 of 23)	7490	NM_001080423	80852	Hs.517819	NM_001080423		GRIP2	-	glutamate receptor interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_21289	chr11	114090821	114091022	+	12.66516	NA	intron (NM_001018011, intron 4 of 6)	intron (NM_001018011, intron 4 of 6)	-75614	NM_006169	4837	Hs.503911	NM_006169	HPRD:02478	NNMT	-	nicotinamide N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_101426	chr8	141881667	141881865	+	12.66516	NA	intron (NM_153831, intron 4 of 31)	AluJo|SINE|Alu	129646	NM_153831	5747	Hs.395482	NM_005607	HPRD:02859	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_24845	chr12	58934403	58934506	+	12.66516	NA	Intergenic	Intergenic	241044	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_5234	chr1	103662823	103663133	+	12.66516	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-88926	NM_001854	1301	Hs.523446	NM_001854	HPRD:00375	COL11A1	CO11A1|COLL6|STL2	collagen, type XI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_85795	chr6	19715421	19715549	+	12.66516	NA	Intergenic	Intergenic	-122116	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_101041	chr8	132828710	132828870	+	12.66516	NA	Intergenic	Intergenic	-87566	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_27084	chr12	126773575	126773767	+	12.66516	NA	Intergenic	Intergenic	-153356	NR_015398	100128554	Hs.408255	NR_015398	ENSG00000214043	LOC100128554	-	uncharacterized LOC100128554	ncRNA
19-PTNLD28-TUMOR_peak_100578	chr8	125165452	125165593	+	12.66516	NA	intron (NR_103547, intron 1 of 4)	intron (NR_103547, intron 1 of 4)	18241	NR_103547	157376	Hs.662360	NM_182525	HPRD:08138	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_20095	chr11	75350808	75351135	+	12.66516	NA	intron (NM_033063, intron 1 of 3)	intron (NM_033063, intron 1 of 3)	28508	NM_207577	4135	Hs.585540	NM_033063	HPRD:15989	MAP6	MTAP6|N-STOP|STOP	microtubule-associated protein 6	protein-coding
19-PTNLD28-TUMOR_peak_33832	chr15	60719425	60719667	+	12.66516	NA	intron (NM_001018089, intron 15 of 15)	intron (NM_001018089, intron 15 of 15)	-29361	NM_004039	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_15637	chr10	112662128	112662231	+	12.66516	NA	intron (NM_001243783, intron 1 of 2)	intron (NM_001243783, intron 1 of 2)	4331	NR_039828	100616113		NR_039828	miRBase:MI0017312	MIR4680	-	microRNA 4680	ncRNA
19-PTNLD28-TUMOR_peak_4342	chr1	72326846	72327023	+	12.66516	NA	intron (NM_173808, intron 2 of 6)	MIR|SINE|MIR	-24239	NR_046218	100852409	Hs.681780	NR_046218		NEGR1-IT1	-	NEGR1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_44585	chr18	11407973	11408096	+	12.66516	NA	Intergenic	Intergenic	-80535	NR_110779	101927433	Hs.331210	NR_110778	ENSG00000267252	LINC01255	-	long intergenic non-protein coding RNA 1255	ncRNA
19-PTNLD28-TUMOR_peak_46714	chr19	3228676	3228794	+	12.66516	NA	intron (NR_033342, intron 1 of 12)	CpG	3252	NR_033342	60680	Hs.655747	NM_021938	HPRD:12535	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP, Elav-like family member 5	protein-coding
19-PTNLD28-TUMOR_peak_74518	chr4	10881199	10881404	+	12.66516	NA	Intergenic	Intergenic	-194915	NM_052964	116449	Hs.678910	NM_052964		CLNK	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
19-PTNLD28-TUMOR_peak_104636	chr9	95871586	95871766	+	12.66516	NA	intron (NM_032310, intron 2 of 5)	intron (NM_032310, intron 2 of 5)	13226	NM_032310	84270	Hs.434213	NM_032310	HPRD:12985	C9orf89	BinCARD|bA370F5.1	chromosome 9 open reading frame 89	protein-coding
19-PTNLD28-TUMOR_peak_36132	chr16	8885883	8885994	+	12.66516	NA	Intergenic	Intergenic	5567	NM_015421	25880	Hs.513330	NM_015421	HPRD:08527	TMEM186	C16orf51	transmembrane protein 186	protein-coding
19-PTNLD28-TUMOR_peak_51347	chr2	17688068	17688298	+	12.66516	NA	Intergenic	L2a|LINE|L2	11523	NM_001099218	729475	Hs.515802	NM_001099218	ENSG00000214842	RAD51AP2	-	RAD51 associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_52190	chr2	38265281	38265525	+	12.66516	NA	intron (NM_144713, intron 10 of 10)	intron (NM_144713, intron 10 of 10)	-1919	NR_102712	101410544	Hs.591566	NR_102712		RMDN2-AS1	-	RMDN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89400	chr6	127347489	127347686	+	12.66516	NA	Intergenic	Intergenic	-92461	NM_032784	84870	Hs.135254	NM_032784		RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
19-PTNLD28-TUMOR_peak_103706	chr9	72067145	72067360	+	12.66516	NA	intron (NM_001163, intron 8 of 12)	intron (NM_001163, intron 8 of 12)	123011	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_35258	chr15	91950567	91950704	+	12.66516	NA	Intergenic	LTR16A1|LTR|ERVL	-55934	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	LOC101926928	-	uncharacterized LOC101926928	ncRNA
19-PTNLD28-TUMOR_peak_20953	chr11	106374736	106374926	+	12.66516	NA	Intergenic	Intergenic	252697	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
19-PTNLD28-TUMOR_peak_100088	chr8	110359236	110359362	+	12.66516	NA	Intergenic	Intergenic	12747	NR_036472	56943	Hs.492555	NM_020189	HPRD:13121	ENY2	e(y)2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_92164	chr7	42286922	42287165	+	12.66516	NA	Intergenic	Intergenic	-10425	NM_000168	2737	Hs.21509	NM_000168	HPRD:01313	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_59301	chr2	242353757	242353941	+	12.66516	NA	intron (NM_001282983, intron 7 of 17)	intron (NM_001282983, intron 7 of 17)	58185	NM_001282984	9855	Hs.726316	NM_014808	HPRD:16885	FARP2	FIR|FRG|PLEKHC3	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_1953	chr1	30412033	30412199	+	12.66516	NA	Intergenic	MIRb|SINE|MIR	98343	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_11628	chr10	1082288	1082443	+	12.66516	NA	intron (NR_027708, intron 3 of 4)	L2b|LINE|L2	-10566	NM_033261	91734	Hs.9270	NM_033261	HPRD:17127	IDI2	IPPI2	isopentenyl-diphosphate delta isomerase 2	protein-coding
19-PTNLD28-TUMOR_peak_77956	chr4	167677464	167677578	+	12.66516	NA	intron (NM_001204356, intron 6 of 9)	L1HS|LINE|L1	478056	NM_001204353	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_16552	chr11	1108777	1108941	+	12.66516	NA	Intergenic	Intergenic	33984	NM_002457	4583	Hs.315	NM_002457	HPRD:11828	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_23680	chr12	32518511	32518683	+	12.66516	NA	intron (NM_001714, intron 8 of 9)	intron (NM_001714, intron 8 of 9)	-136444	NM_139241	121512	Hs.117835	NM_139241	HPRD:16891	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_91240	chr7	7315896	7316060	+	12.66516	NA	intron (NR_108073, intron 3 of 3)	intron (NR_108073, intron 3 of 3)	21193	NR_108073	101927354	Hs.520664	NR_108073		LOC101927354	-	uncharacterized LOC101927354	ncRNA
19-PTNLD28-TUMOR_peak_45064	chr18	27420239	27420360	+	12.66516	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-458577	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	ncRNA
19-PTNLD28-TUMOR_peak_109689	chrX	147074831	147074925	+	12.66516	NA	intron (NM_152578, intron 1 of 5)	SVA_F|Other|Other	12029	NM_152578	158521	Hs.128580	NM_152578	HPRD:06546	FMR1NB	CT37|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding
19-PTNLD28-TUMOR_peak_33065	chr15	36488024	36488167	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	269038	NR_039735	100616293		NR_039735	miRBase:MI0016876	MIR4510	-	microRNA 4510	ncRNA
19-PTNLD28-TUMOR_peak_21205	chr11	112503676	112503806	+	12.66516	NA	Intergenic	Intergenic	-77216	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_51219	chr2	12837824	12838042	+	12.66516	NA	Intergenic	Intergenic	-19065	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_77985	chr4	169570212	169570371	+	12.66516	NA	intron (NM_001166109, intron 1 of 18)	intron (NM_001166109, intron 1 of 18)	17523	NM_001166109	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_28659	chr13	91519678	91519842	+	12.66516	NA	Intergenic	Intergenic	59091	NR_027039	144776	Hs.434120	NR_027039	ENSG00000231674	LINC00410	-	long intergenic non-protein coding RNA 410	ncRNA
19-PTNLD28-TUMOR_peak_28547	chr13	78052412	78052534	+	12.66516	NA	Intergenic	Intergenic	-57336	NM_144777	8796	Hs.534699	NM_003843	HPRD:09161	SCEL	-	sciellin	protein-coding
19-PTNLD28-TUMOR_peak_109166	chrX	109656479	109656603	+	12.66516	NA	intron (NM_001171689, intron 2 of 7)	L2c|LINE|L2	-5744	NM_020769	57529	Hs.201071	NM_020769	HPRD:06600	RGAG1	MAR9|MART9	retrotransposon gag domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70815	chr3	130871254	130871353	+	12.66516	NA	exon (NM_024800, exon 8 of 18)	exon (NM_024800, exon 8 of 18)	-125605	NM_014065	28990	Hs.100878	NM_014065	HPRD:11038	ASTE1	-	asteroid homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_58958	chr2	235260728	235260897	+	12.66516	NA	Intergenic	LTR13A|LTR|ERVK	144881	NM_005737	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_99153	chr8	71185873	71186089	+	12.66516	NA	intron (NM_006540, intron 2 of 22)	intron (NM_006540, intron 2 of 22)	130039	NM_006540	10499	Hs.446678	NM_006540	HPRD:09066	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
19-PTNLD28-TUMOR_peak_88065	chr6	54200808	54200979	+	12.66516	NA	intron (NM_014464, intron 4 of 10)	intron (NM_014464, intron 4 of 10)	27690	NM_014464	27283	Hs.127011	NM_014464	HPRD:09483	TINAG	TIN-AG	tubulointerstitial nephritis antigen	protein-coding
19-PTNLD28-TUMOR_peak_14780	chr10	89451422	89451626	+	12.66516	NA	intron (NM_001015880, intron 1 of 12)	intron (NM_001015880, intron 1 of 12)	32048	NM_001015880	9060	Hs.524491	NM_004670	HPRD:04303	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_74598	chr4	15316647	15316881	+	12.66516	NA	Intergenic	Intergenic	-24796	NM_001135170	114905	Hs.153714	NM_031911	HPRD:16633	C1QTNF7	CTRP7|ZACRP7	C1q and tumor necrosis factor related protein 7	protein-coding
19-PTNLD28-TUMOR_peak_19056	chr11	63246423	63246597	+	12.66516	NA	intron (NM_001146728, intron 3 of 5)	intron (NM_001146728, intron 3 of 5)	12170	NM_054108	117245	Hs.410316	NM_054108	HPRD:13672	HRASLS5	HRLP5|HRSL5|RLP1|iNAT	HRAS-like suppressor family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_7414	chr1	157465925	157466087	+	12.66516	NA	Intergenic	Intergenic	56304	NM_031281	83416	Hs.415950	NM_031281	HPRD:16169	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor-like 5	protein-coding
19-PTNLD28-TUMOR_peak_27206	chr12	131589349	131589451	+	12.66516	NA	exon (NM_198827, exon 16 of 25)	exon (NM_198827, exon 16 of 25)	-60156	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_106139	chr9	129631692	129631864	+	12.66516	NA	intron (NM_001099270, intron 1 of 1)	intron (NM_001099270, intron 1 of 1)	8834	NM_001099270	403341	Hs.177633	NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
19-PTNLD28-TUMOR_peak_35846	chr16	2780416	2780523	+	12.66516	NA	Intergenic	AluY|SINE|Alu	-9917	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	protease, serine 27	protein-coding
19-PTNLD28-TUMOR_peak_76494	chr4	106865812	106866000	+	12.66516	NA	intron (NM_001184693, intron 9 of 11)	intron (NM_001184693, intron 9 of 11)	49309	NM_001184690	255743	Hs.518921	NM_198278	HPRD:14141	NPNT	EGFL6L|POEM	nephronectin	protein-coding
19-PTNLD28-TUMOR_peak_36884	chr16	24053498	24053657	+	12.66516	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	206277	NM_212535	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_100919	chr8	130423771	130423892	+	12.66516	NA	Intergenic	Intergenic	-170345	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_103831	chr9	75011583	75011694	+	12.66516	NA	Intergenic	Intergenic	-31475	NM_006007	7763	Hs.406096	NM_006007	HPRD:05302	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger, AN1-type domain 5	protein-coding
19-PTNLD28-TUMOR_peak_56158	chr2	146242178	146242379	+	12.66516	NA	Intergenic	Intergenic	816744	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_110301	chrY	18335303	18335438	+	12.66516	NA	Intergenic	L1PA4|LINE|L1	-1277468	NR_028083	340618	Hs.434364	NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41, member A, Y-linked 1	ncRNA
19-PTNLD28-TUMOR_peak_17404	chr11	15848495	15848715	+	12.66516	NA	Intergenic	Intergenic	142562	NR_106721	102464826		NR_106721		MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
19-PTNLD28-TUMOR_peak_44870	chr18	20558473	20558647	+	12.66516	NA	intron (NM_203291, intron 6 of 18)	intron (NM_203291, intron 6 of 18)	44721	NM_203291	5932	Hs.546282	NM_002894	HPRD:04990	RBBP8	COM1|CTIP|JWDS|RIM|SAE2|SCKL2	retinoblastoma binding protein 8	protein-coding
19-PTNLD28-TUMOR_peak_28712	chr13	95844140	95844251	+	12.66516	NA	intron (NM_001105515, intron 9 of 20)	intron (NM_001105515, intron 9 of 20)	109492	NM_001105515	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_23372	chr12	22254917	22255102	+	12.66516	NA	Intergenic	L1PREC2|LINE|L1	55899	NM_018686	55907	Hs.311346	NM_018686	HPRD:04501	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
19-PTNLD28-TUMOR_peak_80672	chr5	73423838	73423948	+	12.66516	NA	Intergenic	Intergenic	180257	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_108556	chrX	64808153	64808359	+	12.66516	NA	Intergenic	Intergenic	-35955	NR_033742	83957	Hs.652967	NR_033742	HPRD:06511	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_69853	chr3	112867320	112867539	+	12.66516	NA	intron (NR_110823, intron 3 of 3)	intron (NR_110823, intron 3 of 3)	19149	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LOC101929717	-	uncharacterized LOC101929717	ncRNA
19-PTNLD28-TUMOR_peak_81080	chr5	88880277	88880399	+	12.66516	NA	Intergenic	Intergenic	432199	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_72285	chr3	170489364	170489521	+	12.66516	NA	Intergenic	Intergenic	98603	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_108049	chrX	42383665	42383902	+	12.66516	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	253703	NR_002191	80316	Hs.127689	NM_025210		PPP1R2P9	I-4	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_92208	chr7	43456057	43456185	+	12.66516	NA	intron (NM_015052, intron 8 of 29)	L1PA2|LINE|L1	106020	NR_038276	100506895	Hs.676047	NR_038276	ENSG00000231638	LOC100506895	-	uncharacterized LOC100506895	ncRNA
19-PTNLD28-TUMOR_peak_25611	chr12	94136055	94136293	+	12.66516	NA	intron (NM_003805, intron 2 of 2)	GC_rich|Low_complexity|Low_complexity	-4575	NR_110092	101928731	Hs.659971	NR_110092		LOC101928731	-	uncharacterized LOC101928731	ncRNA
19-PTNLD28-TUMOR_peak_76285	chr4	94221969	94222100	+	12.66516	NA	intron (NM_001510, intron 8 of 15)	LTR2B|LTR|ERV1	-528044	NM_005172	474	Hs.532680	NM_005172	HPRD:03270	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_95290	chr7	130262209	130262318	+	12.66516	NA	intron (NM_012133, intron 9 of 12)	L1PA2|LINE|L1	91335	NM_012133	26958	Hs.6421	NM_012133		COPG2	2-COP|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_85770	chr6	18997680	18997864	+	12.66516	NA	Intergenic	L1PA15-16|LINE|L1	182939	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_88793	chr6	92086411	92086577	+	12.66516	NA	Intergenic	LTR16A|LTR|ERVL	-144884	NR_039786	100616174		NR_039786	miRBase:MI0017270	MIR4643	-	microRNA 4643	ncRNA
19-PTNLD28-TUMOR_peak_89453	chr6	130797127	130797293	+	12.66516	NA	Intergenic	L1PA4|LINE|L1	38948	NM_052913	114801	Hs.591341	NM_052913	HPRD:13901	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
19-PTNLD28-TUMOR_peak_68504	chr3	56624960	56625116	+	12.66516	NA	intron (NR_024460, intron 7 of 17)	intron (NR_024460, intron 7 of 17)	33854	NM_001012506	285331	Hs.476399	NM_001012506	HPRD:14569	CCDC66	-	coiled-coil domain containing 66	protein-coding
19-PTNLD28-TUMOR_peak_88570	chr6	84784858	84785032	+	12.66516	NA	intron (NM_138409, intron 3 of 3)	MLT1J2|LTR|ERVL-MaLR	41525	NM_138409	112609	Hs.370055	NM_138409	HPRD:12843	MRAP2	BMIQ18|C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_84168	chr5	174673405	174673566	+	12.66516	NA	Intergenic	L2a|LINE|L2	197678	NM_000794	1812	Hs.2624	NM_000794	HPRD:00538	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
19-PTNLD28-TUMOR_peak_50941	chr2	8863245	8863406	+	12.66516	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	41212	NM_002166	3398	Hs.180919	NM_002166	HPRD:02664	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_75542	chr4	65730332	65730443	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	139831	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
19-PTNLD28-TUMOR_peak_76421	chr4	103079227	103079462	+	12.66516	NA	Intergenic	MER1B|DNA|hAT-Charlie	166125	NM_001135148	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_76267	chr4	91095870	91096204	+	12.66516	NA	intron (NM_001145065, intron 1 of 10)	L1ME1|LINE|L1	47353	NM_001145065	401145	Hs.654735	NM_207491	HPRD:17561	CCSER1	FAM190A	coiled-coil serine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_99426	chr8	86921960	86922065	+	12.66516	NA	Intergenic	Intergenic	-81841	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_27978	chr13	41796517	41796634	+	12.66516	NA	intron (NM_004294, intron 9 of 9)	MLT1E1A|LTR|ERVL-MaLR	-27873	NM_032138	84078	Hs.63841	NM_032138		KBTBD7	-	kelch repeat and BTB (POZ) domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_65379	chr22	37428762	37429007	+	12.66516	NA	Intergenic	Intergenic	-12660	NM_001270483	7263	Hs.474783	NM_003312	HPRD:01583	TST	RDS	thiosulfate sulfurtransferase (rhodanese)	protein-coding
19-PTNLD28-TUMOR_peak_33377	chr15	44544411	44544812	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-36298	NM_177974	113201	Hs.512867	NM_138423	HPRD:11018	CASC4	H63	cancer susceptibility candidate 4	protein-coding
19-PTNLD28-TUMOR_peak_51887	chr2	29353256	29353390	+	12.66516	NA	intron (NM_001287528, intron 2 of 14)	intron (NM_001287528, intron 2 of 14)	15031	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_93697	chr7	82201636	82201788	+	12.66516	NA	Intergenic	Intergenic	-128681	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_98308	chr8	38824041	38824224	+	12.66516	NA	intron (NM_021623, intron 10 of 12)	intron (NM_021623, intron 10 of 12)	-7536	NM_153692	203100	Hs.661014	NM_153692	HPRD:08818	HTRA4	-	HtrA serine peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_76983	chr4	126023002	126023292	+	12.66516	NA	Intergenic	MIRb|SINE|MIR	-214420	NM_001291303	79633	Hs.563205	NM_024582	HPRD:07637	FAT4	CDHF14|CDHR11|FAT-J|FATJ|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
19-PTNLD28-TUMOR_peak_98764	chr8	54265797	54266082	+	12.66516	NA	Intergenic	PABL_B|LTR|ERV1	-101682	NM_001282904	4986	Hs.106795	NM_000912	HPRD:01309	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor, kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_23080	chr12	12215105	12215201	+	12.66516	NA	Intergenic	HERVH-int|LTR|ERV1	-8725	NM_138723	79370	Hs.210343	NM_030766	HPRD:05841	BCL2L14	BCLG	BCL2-like 14 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_5226	chr1	102565622	102565748	+	12.66516	NA	Intergenic	LTR49-int|LTR|ERV1	-102895	NR_110211	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
19-PTNLD28-TUMOR_peak_77122	chr4	138045576	138045705	+	12.66516	NA	Intergenic	Intergenic	408012	NM_019035	54510	Hs.591691	NM_019035	HPRD:12205	PCDH18	PCDH68L	protocadherin 18	protein-coding
19-PTNLD28-TUMOR_peak_12196	chr10	17016272	17016513	+	12.66516	NA	intron (NM_001081, intron 31 of 66)	intron (NM_001081, intron 31 of 66)	155424	NM_001081	8029	Hs.166206	NM_001081	HPRD:04296	CUBN	IFCR|MGA1|gp280	cubilin (intrinsic factor-cobalamin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_71038	chr3	135222709	135222938	+	12.66516	NA	Intergenic	Intergenic	-461692	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_83020	chr5	146910653	146910771	+	12.66516	NA	Intergenic	Intergenic	-21093	NM_001197294	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_5216	chr1	101798836	101799045	+	12.66516	NA	Intergenic	Intergenic	7511	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-31P	RNU6-31|RNU6-6	RNA, U6 small nuclear 31, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_77366	chr4	143395482	143395726	+	12.66516	NA	intron (NM_003866, intron 2 of 26)	L1PA14|LINE|L1	372000	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_15286	chr10	103227132	103227287	+	12.66516	NA	intron (NM_003939, intron 2 of 13)	intron (NM_003939, intron 2 of 13)	113419	NM_033637	8945	Hs.643802	NM_003939	HPRD:04596	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_56451	chr2	157302481	157302651	+	12.66516	NA	intron (NM_000408, intron 1 of 16)	MLT1J2|LTR|ERVL-MaLR	9666	NM_000408	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_67362	chr3	30762734	30762909	+	12.66516	NA	Intergenic	MER110|LTR|ERV1	114827	NM_003242	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_99267	chr8	77593287	77593471	+	12.66516	NA	promoter-TSS (NM_024721)	promoter-TSS (NM_024721)	-136	NM_024721	79776	Hs.458973	NM_024721	HPRD:09503	ZFHX4	ZFH4|ZHF4	zinc finger homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_30774	chr14	65078904	65079029	+	12.66516	NA	Intergenic	Plat_L3|LINE|CR1	62346	NM_172365	145376	Hs.144696	NM_172365	HPRD:08505	PPP1R36	C14orf50	protein phosphatase 1, regulatory subunit 36	protein-coding
19-PTNLD28-TUMOR_peak_103876	chr9	76041198	76041535	+	12.66516	NA	Intergenic	Intergenic	274585	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_57387	chr2	187714133	187714294	+	12.66516	NA	promoter-TSS (NM_182521)	promoter-TSS (NM_182521)	-316	NM_182521	151112	Hs.375054	NM_182521	HPRD:15902	ZSWIM2	MEX|ZZZ2	zinc finger, SWIM-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25258	chr12	71127308	71127424	+	12.66516	NA	intron (NM_001207015, intron 5 of 12)	intron (NM_001207015, intron 5 of 12)	21022	NR_073474	5801	Hs.506076	NM_002849	HPRD:04169	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase, receptor type, R	protein-coding
19-PTNLD28-TUMOR_peak_82381	chr5	136385866	136386238	+	12.66516	NA	intron (NM_004598, intron 6 of 10)	L1PA2|LINE|L1	448966	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_20179	chr11	76614503	76614691	+	12.66516	NA	intron (NM_001300953, intron 1 of 9)	MER4D|LTR|ERV1	42680	NM_001300955	55331	Hs.23862	NM_018367		ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
19-PTNLD28-TUMOR_peak_59822	chr20	11369970	11370089	+	12.66516	NA	Intergenic	Intergenic	-115998	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_71073	chr3	136062750	136062913	+	12.66516	NA	exon (NM_005862, exon 30 of 34)	exon (NM_005862, exon 30 of 34)	93664	NM_001178014	5096	Hs.63788	NM_000532	HPRD:01982	PCCB	-	propionyl CoA carboxylase, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_36114	chr16	8420728	8420856	+	12.66516	NA	Intergenic	Intergenic	167036	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_84776	chr6	2209599	2209717	+	12.66516	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	-33433	NM_001253846	2762	Hs.144496	NM_001500	HPRD:11925	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_57643	chr2	197962438	197962650	+	12.66516	NA	intron (NM_001195144, intron 10 of 27)	L2c|LINE|L2	-171090	NM_024989	80055	Hs.229988	NM_024989	HPRD:10147	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_40635	chr17	20978728	20979006	+	12.66516	NA	promoter-TSS (NR_110895)	promoter-TSS (NR_110895)	-2	NR_110895	101060544	Hs.585812	NR_110895	ENSG00000236819	HP08942	-	uncharacterized LOC101060544	ncRNA
19-PTNLD28-TUMOR_peak_55479	chr2	123002329	123002454	+	12.66516	NA	Intergenic	Intergenic	489270	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_75363	chr4	55768502	55768771	+	12.66516	NA	Intergenic	Intergenic	223126	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_21342	chr11	115484816	115484950	+	12.66516	NA	Intergenic	Intergenic	-109642	NM_001301043	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_65194	chr22	32696063	32696188	+	12.66516	NA	Intergenic	L1PA2|LINE|L1	-44807	NM_014227	6527	Hs.130101	NM_014227	HPRD:10238	SLC5A4	DJ90G24.4|SAAT1|SGLT3	solute carrier family 5 (glucose activated ion channel), member 4	protein-coding
19-PTNLD28-TUMOR_peak_93065	chr7	70046417	70046573	+	12.66516	NA	intron (NM_001127231, intron 5 of 17)	AluJb|SINE|Alu	-551028	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_76668	chr4	113826931	113827152	+	12.66516	NA	intron (NM_001127493, intron 2 of 46)	AluJb|SINE|Alu	87802	NM_001127493	287	Hs.620557	NM_001148	HPRD:00110	ANK2	ANK-2|LQT4|brank-2	ankyrin 2, neuronal	protein-coding
19-PTNLD28-TUMOR_peak_55844	chr2	133561768	133561899	+	12.66516	NA	intron (NM_207481, intron 11 of 17)	intron (NM_207481, intron 11 of 17)	-132763	NM_001077427	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_10025	chr1	214434948	214435101	+	12.66516	NA	Intergenic	Intergenic	-19541	NM_020197	56950	Hs.66170	NM_020197	HPRD:15406	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_57288	chr2	182410791	182411112	+	12.66516	NA	intron (NM_201548, intron 10 of 12)	intron (NM_201548, intron 10 of 12)	89332	NM_000885	3676	Hs.440955	NM_000885	HPRD:01894	ITGA4	CD49D|IA4	integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_21332	chr11	115195449	115195592	+	12.66516	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	179721	NM_014333	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_60091	chr20	19909196	19909346	+	12.66516	NA	intron (NM_001242581, intron 2 of 11)	intron (NM_001242581, intron 2 of 11)	39061	NM_018993	54453	Hs.472270	NM_018993	HPRD:15249	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
19-PTNLD28-TUMOR_peak_31079	chr14	70285543	70285669	+	12.66516	NA	Intergenic	Intergenic	-21600	NM_003049	6554	Hs.952	NM_003049		SLC10A1	NTCP	solute carrier family 10 (sodium/bile acid cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_14985	chr10	95893074	95893274	+	12.66516	NA	intron (NM_001288989, intron 3 of 32)	intron (NM_001288989, intron 3 of 32)	-24623	NR_120616	101927049	Hs.144492	NR_120615		PLCE1-AS2	-	PLCE1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_15692	chr10	114592436	114592591	+	12.66516	NA	Intergenic	Intergenic	9258	NR_120684	103344931	Hs.458447	NR_120684		LOC103344931	-	uncharacterized LOC103344931	ncRNA
19-PTNLD28-TUMOR_peak_97274	chr8	15263717	15263866	+	12.66516	NA	Intergenic	LTR10C|LTR|ERV1	-133805	NM_006765	7991	Hs.426324	NM_006765	HPRD:03228	TUSC3	D8S1992|M33|MRT22|MRT7|N33|OST3A	tumor suppressor candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_105983	chr9	126000772	126000922	+	12.66516	NA	intron (NM_018387, intron 1 of 18)	intron (NM_018387, intron 1 of 18)	29996	NM_018387	55342	Hs.287659	NM_018387	HPRD:10257	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
19-PTNLD28-TUMOR_peak_89501	chr6	133347336	133347453	+	12.66516	NA	Intergenic	L1HS|LINE|L1	-61825	NR_026969	285735	Hs.407549	NM_001037231		LINC00326	NCRNA00326	long intergenic non-protein coding RNA 326	ncRNA
19-PTNLD28-TUMOR_peak_100176	chr8	116765850	116765999	+	12.66516	NA	Intergenic	L1PA3|LINE|L1	-84669	NM_014112	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_93672	chr7	81076826	81076955	+	12.66516	NA	Intergenic	Intergenic	322562	NM_001010933	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_48794	chr19	37194388	37194586	+	12.66516	NA	intron (NM_001300979, intron 3 of 5)	L1PA3|LINE|L1	14185	NM_152603	163081	Hs.412517	NM_152603	HPRD:11728	ZNF567	-	zinc finger protein 567	protein-coding
19-PTNLD28-TUMOR_peak_49522	chr19	47217785	47217999	+	12.66230	NA	promoter-TSS (NM_001079882)	promoter-TSS (NM_001079882)	-315	NM_001079882	25865	Hs.466987	NM_016457	HPRD:09523	PRKD2	PKD2|nPKC-D2	protein kinase D2	protein-coding
19-PTNLD28-TUMOR_peak_6600	chr1	149449489	149449742	+	12.66230	NA	Intergenic	Intergenic	64641	NR_104086	101954277		NR_104086		RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
19-PTNLD28-TUMOR_peak_25979	chr12	105812485	105812751	+	12.65981	NA	Intergenic	Intergenic	88204	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_26101	chr12	108153357	108153467	+	12.65561	NA	intron (NR_120474, intron 4 of 4)	intron (NR_120474, intron 4 of 4)	1502	NM_012406	11108	Hs.506655	NM_012406	HPRD:10425	PRDM4	PFM1	PR domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_105225	chr9	110512170	110512327	+	12.65561	NA	Intergenic	Intergenic	-260201	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_62082	chr20	52486396	52486544	+	12.65459	NA	Intergenic	Intergenic	5778	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_91216	chr7	6965990	6966112	+	12.65459	NA	Intergenic	Intergenic	-100125	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_91207	chr7	6894356	6894641	+	12.65459	NA	Intergenic	CpG	-28572	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_105369	chr9	112878288	112878478	+	12.65263	NA	intron (NM_001004065, intron 1 of 3)	intron (NM_001004065, intron 1 of 3)	-9398	NM_001136562	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|PRKA2	A kinase (PRKA) anchor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_47676	chr19	14895986	14896262	+	12.65263	NA	Intergenic	Intergenic	-6771	NM_013447	30817	Hs.531619	NM_013447	HPRD:07308	EMR2	CD312	egf-like module containing, mucin-like, hormone receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_14398	chr10	77043043	77043288	+	12.65263	NA	intron (NR_120651, intron 1 of 3)	intron (NR_120651, intron 1 of 3)	-12976	NR_038224	253264	Hs.662111	NR_038223	ENSG00000226051	ZNF503-AS1	-	ZNF503 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23469	chr12	26432072	26432237	+	12.65234	NA	Intergenic	Intergenic	83648	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_22370	chr12	568717	568828	+	12.65202	NA	promoter-TSS (NM_173593)	promoter-TSS (NM_173593)	-771	NM_173593	283358	Hs.504416	NM_173593	HPRD:12514	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding
19-PTNLD28-TUMOR_peak_16333	chr10	134260338	134260480	+	12.65202	NA	intron (NM_173541, intron 2 of 2)	intron (NM_173541, intron 2 of 2)	1695	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_19536	chr11	67615500	67615641	+	12.65202	NA	Intergenic	HERVE-int|LTR|ERV1	-42763	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_84144	chr5	174038072	174038231	+	12.64437	NA	Intergenic	MIR|SINE|MIR	-113424	NM_002449	4488	Hs.89404	NM_002449	HPRD:00421	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_84257	chr5	176102784	176102919	+	12.63706	NA	Intergenic	L1MB8|LINE|L1	28463	NM_012171	26262	Hs.532129	NM_012171	HPRD:18198	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
19-PTNLD28-TUMOR_peak_89568	chr6	135533691	135533895	+	12.63706	NA	intron (NM_001130172, intron 14 of 14)	intron (NM_001130172, intron 14 of 14)	31340	NM_001130172	4602	Hs.606320	NM_005375	HPRD:01810	MYB	Cmyb|c-myb|c-myb_CDS|efg	v-myb avian myeloblastosis viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_105351	chr9	112651908	112652024	+	12.63706	NA	intron (NM_001037293, intron 4 of 6)	intron (NM_001037293, intron 4 of 6)	109389	NM_007203	445815	Hs.591908	NM_007203	HPRD:09197	PALM2-AKAP2	AKAP2	PALM2-AKAP2 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_9982	chr1	212643456	212643682	+	12.63706	NA	Intergenic	Intergenic	37340	NM_013349	29937	Hs.461787	NM_013349	HPRD:11603	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_28742	chr13	97424815	97424948	+	12.63706	NA	intron (NM_153456, intron 1 of 1)	intron (NM_153456, intron 1 of 1)	211545	NR_051966	100887754	Hs.617003	NR_051966		LINC00359	-	long intergenic non-protein coding RNA 359	ncRNA
19-PTNLD28-TUMOR_peak_8050	chr1	168323574	168323721	+	12.63706	NA	Intergenic	L1PA2|LINE|L1	-21115	NR_030284	693142		NR_030284	miRBase:MI0003563	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
19-PTNLD28-TUMOR_peak_104718	chr9	97561955	97562354	+	12.63706	NA	intron (NM_032823, intron 4 of 14)	AluSz|SINE|Alu	-10090	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_12469	chr10	24898282	24898536	+	12.63706	NA	intron (NM_020824, intron 9 of 25)	intron (NM_020824, intron 9 of 25)	114188	NM_020824	57584	Hs.524195	NM_020824	HPRD:06445	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
19-PTNLD28-TUMOR_peak_39651	chr17	1812132	1812253	+	12.63706	NA	Intergenic	Intergenic	78919	NM_002945	6117	Hs.461925	NM_002945	HPRD:01565	RPA1	HSSB|MST075|REPA1|RF-A|RP-A|RPA70	replication protein A1, 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_17306	chr11	13250850	13251009	+	12.63706	NA	Intergenic	Intergenic	-48345	NM_001030273	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_16795	chr11	4086959	4087174	+	12.63706	NA	intron (NM_001277962, intron 5 of 12)	intron (NM_001277962, intron 5 of 12)	-28858	NM_001033	6240	Hs.445705	NM_001033	HPRD:01588	RRM1	R1|RIR1|RR1	ribonucleotide reductase M1	protein-coding
19-PTNLD28-TUMOR_peak_48870	chr19	38724576	38724701	+	12.63706	NA	Intergenic	Intergenic	-4284	NM_001135156	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_91690	chr7	25419384	25419514	+	12.63693	NA	Intergenic	LTR43|LTR|ERV1	-151344	NM_022150	64111	Hs.60473	NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
19-PTNLD28-TUMOR_peak_3984	chr1	62588018	62588173	+	12.63693	NA	intron (NM_176877, intron 38 of 42)	intron (NM_176877, intron 38 of 42)	-72379	NM_001164835	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_5562	chr1	112479792	112480117	+	12.63693	NA	intron (NM_172198, intron 2 of 6)	intron (NM_172198, intron 2 of 6)	51823	NM_172198	3752	Hs.666367	NM_004980	HPRD:16104	KCND3	KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22	potassium voltage-gated channel, Shal-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_8471	chr1	178653471	178653593	+	12.63693	NA	Intergenic	AluSx|SINE|Alu	6648	NR_039622	100616328		NR_039622	miRBase:MI0016763	MIR4424	-	microRNA 4424	ncRNA
19-PTNLD28-TUMOR_peak_63001	chr21	28477499	28477918	+	12.63693	NA	Intergenic	Intergenic	-138269	NM_007038	11096	Hs.58324	NM_007038	HPRD:05420	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	ADAM metallopeptidase with thrombospondin type 1 motif, 5	protein-coding
19-PTNLD28-TUMOR_peak_59837	chr20	11831069	11831232	+	12.63693	NA	intron (NR_110635, intron 1 of 1)	MLT1A0|LTR|ERVL-MaLR	20213	NR_110635	728450	Hs.560990	NR_110635		LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
19-PTNLD28-TUMOR_peak_84724	chr6	1437065	1437201	+	12.63693	NA	Intergenic	Intergenic	-46487	NR_106778	102466720		NR_106778		MIR6720	hsa-mir-6720	microRNA 6720	ncRNA
19-PTNLD28-TUMOR_peak_103560	chr9	69241675	69241792	+	12.63693	NA	intron (NM_001085457, intron 6 of 14)	L2a|LINE|L2	20860	NM_001085457	644019	Hs.597638	NM_001085457	ENSG00000204790	CBWD6	-	COBW domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_94479	chr7	101685680	101685857	+	12.63693	NA	intron (NM_181552, intron 3 of 23)	intron (NM_181552, intron 3 of 23)	224886	NM_181552	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_42531	chr17	56012476	56012719	+	12.63132	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	20087	NM_001271875	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61261	chr20	43349793	43350225	+	12.63132	NA	intron (NM_003881, intron 2 of 3)	AluJo|SINE|Alu	6124	NM_003881	8839	Hs.592145	NM_003881	HPRD:16020	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
19-PTNLD28-TUMOR_peak_56987	chr2	173295556	173295680	+	12.63125	NA	intron (NM_001079818, intron 1 of 24)	intron (NM_001079818, intron 1 of 24)	3304	NM_001079818	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_46434	chr18	77710869	77711124	+	12.63125	NA	5' UTR (NM_025078, exon 2 of 6)	5' UTR (NM_025078, exon 2 of 6)	657	NM_025078	80148	Hs.288284	NM_025078	HPRD:11454	PQLC1	-	PQ loop repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_26206	chr12	109915379	109915717	+	12.63125	NA	promoter-TSS (NM_031954)	promoter-TSS (NM_031954)	120	NM_183415	89910	Hs.374067	NM_130466	HPRD:06993	UBE3B	BPIDS	ubiquitin protein ligase E3B	protein-coding
19-PTNLD28-TUMOR_peak_14022	chr10	71076201	71076344	+	12.62970	NA	intron (NM_033496, intron 1 of 17)	L2|LINE|L2	662	NM_033496	3098	Hs.370365	NM_000188	HPRD:00809	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_98114	chr8	33185237	33185504	+	12.62970	NA	Intergenic	Intergenic	145294	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_78199	chr4	183783427	183783809	+	12.62839	NA	Intergenic	Intergenic	55012	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_101260	chr8	136913800	136914059	+	12.62501	NA	Intergenic	L1PB1|LINE|L1	444213	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_40405	chr17	17633077	17633216	+	12.62501	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	48359	NM_030665	10743	Hs.655395	NM_030665	HPRD:07406	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
19-PTNLD28-TUMOR_peak_53045	chr2	64246042	64246700	+	12.62501	NA	promoter-TSS (NM_016516)	promoter-TSS (NM_016516)	-157	NM_016516	51542	Hs.48499	NM_016516	HPRD:10302	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	vacuolar protein sorting 54 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_4701	chr1	87915018	87915225	+	12.62501	NA	Intergenic	Intergenic	-77783	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
19-PTNLD28-TUMOR_peak_25914	chr12	104509017	104509319	+	12.62501	NA	Intergenic	AluSx3|SINE|Alu	22872	NM_006166	4801	Hs.84928	NM_006166	HPRD:01794	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y, beta	protein-coding
19-PTNLD28-TUMOR_peak_5157	chr1	100151327	100151505	+	12.62501	NA	intron (NM_017734, intron 3 of 7)	intron (NM_017734, intron 3 of 7)	-3195	NR_037516	100500863		NR_037516	miRBase:MI0016689	MIR548AA1	-	microRNA 548aa-1	ncRNA
19-PTNLD28-TUMOR_peak_73836	chr4	1550646	1550807	+	12.62501	NA	Intergenic	Intergenic	134992	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_31880	chr14	95939403	95939588	+	12.62501	NA	intron (NM_152592, intron 1 of 16)	intron (NM_152592, intron 1 of 16)	2678	NM_152592	161176	Hs.354645	NM_152592	HPRD:12652	SYNE3	C14orf49|NET53|Nesp3	spectrin repeat containing, nuclear envelope family member 3	protein-coding
19-PTNLD28-TUMOR_peak_27376	chr13	21140580	21140926	+	12.62501	NA	promoter-TSS (NM_006531)	promoter-TSS (NM_006531)	-455	NM_006531	8100	Hs.187376	NM_006531	HPRD:09000	IFT88	D13S1056E|DAF19|TG737|TTC10|hTg737	intraflagellar transport 88	protein-coding
19-PTNLD28-TUMOR_peak_67173	chr3	23970157	23970311	+	12.62501	NA	Intergenic	AluSx3|SINE|Alu	11038	NM_001253380	6138	Hs.381219	NM_002948	HPRD:16043	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10	ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_58708	chr2	228336759	228337106	+	12.62501	NA	promoter-TSS (NM_001135187)	promoter-TSS (NM_001135187)	44	NM_001135189	3267	Hs.352962	NM_004504	HPRD:02918	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_32251	chr14	104333877	104334114	+	12.62428	NA	Intergenic	Intergenic	19937	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	ncRNA
19-PTNLD28-TUMOR_peak_53597	chr2	75071144	75071319	+	12.62322	NA	intron (NM_000189, intron 1 of 17)	intron (NM_000189, intron 1 of 17)	11449	NM_000189	3099	Hs.406266	NM_000189	HPRD:03080	HK2	HKII|HXK2	hexokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_1345	chr1	21961674	21961892	+	12.62322	NA	intron (NM_002885, intron 2 of 24)	intron (NM_002885, intron 2 of 24)	16565	NM_001145658	5909	Hs.148178	NM_002885	HPRD:02609	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_61329	chr20	44034202	44034476	+	12.62054	NA	promoter-TSS (NM_018478)	promoter-TSS (NM_018478)	-294	NM_001197139	55861	Hs.730643	NM_018478	HPRD:12763	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_104704	chr9	97431217	97431628	+	12.61672	NA	Intergenic	MER61F|LTR|ERV1	-28891	NM_001127628	2203	Hs.494496	NM_000507	HPRD:01973	FBP1	FBP	fructose-1,6-bisphosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_39820	chr17	4607389	4607684	+	12.61672	NA	promoter-TSS (NM_014389)	promoter-TSS (NM_014389)	11	NR_103482	101559451	Hs.634966	NR_103482	ENSG00000244184	LOC101559451	-	uncharacterized LOC101559451	ncRNA
19-PTNLD28-TUMOR_peak_60720	chr20	34055340	34055709	+	12.61672	NA	intron (NM_007186, intron 9 of 34)	intron (NM_007186, intron 9 of 34)	12301	NM_007186	11190	Hs.443976	NM_007186	HPRD:09877	CEP250	C-NAP1|CEP2|CNAP1	centrosomal protein 250kDa	protein-coding
19-PTNLD28-TUMOR_peak_73768	chr4	736439	736777	+	12.61672	NA	intron (NM_006315, intron 6 of 10)	intron (NM_006315, intron 6 of 10)	37035	NM_006315	10336	Hs.144309	NM_006315	HPRD:11515	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_94651	chr7	104860355	104860509	+	12.61672	NA	intron (NM_182692, intron 2 of 15)	intron (NM_182692, intron 2 of 15)	49092	NM_182691	6733	Hs.285197	NM_182691	HPRD:04280	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_76367	chr4	100009800	100010100	+	12.61672	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	-11	NM_000671	128	Hs.78989	NM_000671	HPRD:00064	ADH5	ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_50734	chr2	437903	438231	+	12.61672	NA	Intergenic	MER57C1|LTR|ERV1	-149759	NM_001002919	285016	Hs.355207	NM_001002919	HPRD:17344	FAM150B	PRO1097|RGPG542	family with sequence similarity 150, member B	protein-coding
19-PTNLD28-TUMOR_peak_82287	chr5	134492882	134493092	+	12.61485	NA	intron (NM_001277348, intron 2 of 5)	intron (NM_001277348, intron 2 of 5)	90880	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_44510	chr18	9722721	9722944	+	12.61485	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	14604	NM_006868	11031	Hs.99528	NM_006868	HPRD:05751	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_65747	chr22	42927480	42927642	+	12.61485	NA	Intergenic	LTR13A|LTR|ERVK	-11732	NM_015703	27341	Hs.745006	NM_015703		RRP7A	BK126B4.3|CGI-96	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_14182	chr10	72992023	72992390	+	12.61485	NA	intron (NM_001244889, intron 1 of 15)	intron (NM_001244889, intron 1 of 15)	-14221	NR_038453	728978	Hs.646725	NR_038453	ENSG00000237512	UNC5B-AS1	-	UNC5B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65506	chr22	38818544	38818793	+	12.61485	NA	Intergenic	Intergenic	21365	NM_004981	3761	Hs.32505	NM_004981	HPRD:02738	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding
19-PTNLD28-TUMOR_peak_32362	chr14	105956102	105956423	+	12.61365	NA	promoter-TSS (NM_001198983)	promoter-TSS (NM_001198983)	70	NM_001198983	283643	Hs.720306	NM_173608	HPRD:12658	C14orf80	-	chromosome 14 open reading frame 80	protein-coding
19-PTNLD28-TUMOR_peak_32400	chr14	106573090	106573287	+	12.61322	NA	Intergenic	Intergenic	-134830	NR_002224	8755	Hs.662288	NR_002224	ENSG00000233988	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71429	chr3	142984504	142984794	+	12.61322	NA	3' UTR (NM_173653, exon 16 of 16)	3' UTR (NM_173653, exon 16 of 16)	-76439	NR_048544	100885796	Hs.581618	NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56550	chr2	159940206	159940412	+	12.61322	NA	intron (NM_001145909, intron 3 of 26)	intron (NM_001145909, intron 3 of 26)	-103037	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_67110	chr3	22414162	22414304	+	12.61322	NA	Intergenic	CpG	415602	NR_046876	100874221	Hs.160616	NR_046876		ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_65086	chr22	30871104	30871234	+	12.61322	NA	Intergenic	Intergenic	-3135	NM_001257378	266629	Hs.505601	NM_174975	HPRD:15311	SEC14L3	TAP2	SEC14-like 3 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_67435	chr3	32906909	32907042	+	12.61322	NA	intron (NM_001039111, intron 1 of 3)	intron (NM_001039111, intron 1 of 3)	47465	NM_001039111	131405	Hs.567678	NM_001039111		TRIM71	LIN-41|LIN41	tripartite motif containing 71, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_59080	chr2	238330302	238330425	+	12.61322	NA	Intergenic	Intergenic	-7513	NM_057166	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_93564	chr7	77057416	77057718	+	12.61322	NA	Intergenic	Intergenic	-11850	NM_017439	54103	Hs.186649	NM_017439	HPRD:18671	GSAP	PION	gamma-secretase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_58637	chr2	225076637	225076872	+	12.61322	NA	Intergenic	Intergenic	-172718	NM_006216	5270	Hs.38449	NM_006216	HPRD:01510	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	protein-coding
19-PTNLD28-TUMOR_peak_30202	chr14	50534612	50534870	+	12.61322	NA	Intergenic	LTR67B|LTR|ERVL	24620	NM_001014830	196913	Hs.406934	NM_001014830	HPRD:18572	C14orf183	-	chromosome 14 open reading frame 183	protein-coding
19-PTNLD28-TUMOR_peak_68941	chr3	70035630	70035869	+	12.61322	NA	Intergenic	Intergenic	-13146	NR_110000	101927152	Hs.382046	NR_110000	ENSG00000240405	LINC01212	-	long intergenic non-protein coding RNA 1212	ncRNA
19-PTNLD28-TUMOR_peak_59843	chr20	12109724	12109895	+	12.61322	NA	Intergenic	L1PA3|LINE|L1	211296	NM_014962	22903	Hs.709366	NM_014962	HPRD:12538	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_52823	chr2	54799544	54799698	+	12.61322	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	14090	NM_178313	6711	Hs.503178	NM_003128	HPRD:01683	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_77969	chr4	169363164	169363343	+	12.61322	NA	intron (NM_001291510, intron 9 of 29)	L1PA2|LINE|L1	38412	NM_001291510	91351	Hs.535011	NM_001012967	ENSG00000181381	DDX60L	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	protein-coding
19-PTNLD28-TUMOR_peak_44408	chr18	6836443	6836678	+	12.61322	NA	intron (NM_001010000, intron 1 of 16)	MER54A|LTR|ERVL	2128	NM_001010000	79822	Hs.183114	NM_030672	HPRD:10961	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
19-PTNLD28-TUMOR_peak_62853	chr21	17959607	17959786	+	12.61322	NA	intron (NR_111005, intron 6 of 6)	intron (NR_111005, intron 6 of 6)	-2861	NR_029694	406912		NR_029694	miRBase:MI0000470	MIR125B2	MIRN125B2	microRNA 125b-2	ncRNA
19-PTNLD28-TUMOR_peak_34309	chr15	71036475	71036630	+	12.61322	NA	intron (NM_018003, intron 1 of 18)	AluY|SINE|Alu	19298	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_105458	chr9	114875302	114875506	+	12.61322	NA	intron (NM_001282640, intron 6 of 17)	intron (NM_001282640, intron 6 of 17)	62173	NM_022486	64420	Hs.494827	NM_022486	HPRD:15452	SUSD1	-	sushi domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_92885	chr7	65019564	65019719	+	12.61093	NA	intron (NR_038378, intron 9 of 9)	CpG	-93126	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
19-PTNLD28-TUMOR_peak_63747	chr21	43696190	43696655	+	12.61093	NA	intron (NM_207628, intron 6 of 16)	intron (NM_207628, intron 6 of 16)	39284	NM_003226	7033	Hs.82961	NM_003226	HPRD:02797	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_14531	chr10	80712955	80713345	+	12.61093	NA	intron (NR_015429, intron 6 of 7)	intron (NR_015429, intron 6 of 7)	114055	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87332	chr6	39860389	39860536	+	12.61093	NA	intron (NM_015345, intron 19 of 24)	intron (NM_015345, intron 19 of 24)	34993	NM_005943	4337	Hs.357128	NM_005942	HPRD:04749	MOCS1	MIG11|MOCOD|MOCODA	molybdenum cofactor synthesis 1	protein-coding
19-PTNLD28-TUMOR_peak_16574	chr11	1482513	1482732	+	12.61093	NA	non-coding (NR_046331, exon 21 of 21)	non-coding (NR_046331, exon 21 of 21)	19494	NM_053005	81532	Hs.370360	NM_053005		MOB2	HCCA2	MOB kinase activator 2	protein-coding
19-PTNLD28-TUMOR_peak_97471	chr8	20294251	20294661	+	12.61093	NA	Intergenic	Intergenic	161172	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51780	chr2	27943095	27943231	+	12.60462	NA	Intergenic	Intergenic	-51421	NM_004891	9553	Hs.515879	NM_004891	HPRD:14753	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L	mitochondrial ribosomal protein L33	protein-coding
19-PTNLD28-TUMOR_peak_63458	chr21	38711003	38711140	+	12.60314	NA	Intergenic	Intergenic	-28788	NM_101395	1859	Hs.368240	NM_001396	HPRD:09018	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	protein-coding
19-PTNLD28-TUMOR_peak_61885	chr20	49598875	49599098	+	12.60314	NA	Intergenic	Intergenic	23635	NM_014484	27304	Hs.159410	NM_014484	HPRD:10092	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
19-PTNLD28-TUMOR_peak_7285	chr1	156184198	156184379	+	12.60030	NA	intron (NM_001199664, intron 1 of 4)	L2b|LINE|L2	1509	NM_001199663	100527963	Hs.530479	NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF1	PMF1-BGLAP readthrough	protein-coding
19-PTNLD28-TUMOR_peak_103475	chr9	67290292	67290399	+	12.60030	NA	promoter-TSS (NR_002817)	promoter-TSS (NR_002817)	-853	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_48159	chr19	19601295	19601452	+	12.59635	NA	intron (NM_001300946, intron 1 of 10)	intron (NM_001300946, intron 1 of 10)	25096	NM_032037	83983	Hs.532711	NM_032037	HPRD:15441	TSSK6	CT72|SSTK|TSSK4	testis-specific serine kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_103907	chr9	77843874	77844076	+	12.59635	NA	Intergenic	LTR32|LTR|ERVL	140577	NM_012383	26578	Hs.494192	NM_012383	HPRD:17808	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_43397	chr17	73234867	73235028	+	12.59403	NA	intron (NM_001291642, intron 12 of 13)	intron (NM_001291642, intron 12 of 13)	22795	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_72016	chr3	158491931	158492287	+	12.59295	NA	Intergenic	Intergenic	-27606	NR_110328	64747	Hs.58663	NM_022736	HPRD:07851	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94293	chr7	99942190	99942355	+	12.59239	NA	intron (NR_036569, intron 3 of 17)	intron (NR_036569, intron 3 of 17)	-7669	NR_103728	101752334	Hs.521075	NR_103728		PVRIG2P	-	poliovirus receptor related immunoglobulin domain containing 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86349	chr6	28853108	28853399	+	12.59076	NA	Intergenic	LTR12C|LTR|ERV1	-11054	NR_104117	414760	Hs.211005	NR_104117		HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_96089	chr7	143885811	143885976	+	12.59076	NA	intron (NM_001003702, intron 1 of 1)	intron (NM_001003702, intron 1 of 1)	5345	NM_198495	100128553	Hs.645204	NM_198495	ENSG00000225932	CTAGE4	cTAGE-4	CTAGE family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_105853	chr9	124030005	124030169	+	12.59076	NA	promoter-TSS (NM_198252)	promoter-TSS (NM_198252)	-293	NM_001127664	2934	Hs.522373	NM_000177	HPRD:00674	GSN	ADF|AGEL	gelsolin	protein-coding
19-PTNLD28-TUMOR_peak_97599	chr8	22452648	22452953	+	12.58983	NA	TTS (NM_021630)	TTS (NM_021630)	-4314	NM_173686	541565	Hs.743508	NM_173686	HPRD:18675	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_38356	chr16	67565826	67565932	+	12.58877	NA	intron (NM_001193523, intron 1 of 21)	AluY|SINE|Alu	2339	NM_001193523	79567	Hs.152717	NM_024519	HPRD:08586	FAM65A	-	family with sequence similarity 65, member A	protein-coding
19-PTNLD28-TUMOR_peak_64720	chr22	24308387	24308567	+	12.58504	NA	promoter-TSS (NM_001084393)	promoter-TSS (NM_001084393)	-549	NM_001084393	100037417	Hs.744172	NM_001084393	ENSG00000099974	DDTL	KB-226F1.2	D-dopachrome tautomerase-like	protein-coding
19-PTNLD28-TUMOR_peak_6281	chr1	145219741	145219910	+	12.58165	NA	intron (NM_203458, intron 1 of 4)	intron (NM_203458, intron 1 of 4)	10712	NM_203458	388677	Hs.655156	NM_203458	HPRD:14833	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_95335	chr7	130725338	130725666	+	12.58089	NA	intron (NR_109850, intron 3 of 5)	MIR|SINE|MIR	66287	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000226380	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
19-PTNLD28-TUMOR_peak_27412	chr13	22055526	22055759	+	12.58089	NA	Intergenic	MamRep605|Unknown|Unknown	-22133	NR_104486	253832	Hs.564611	NM_153251		ZDHHC20	4933421L13Rik|DHHC-20	zinc finger, DHHC-type containing 20	protein-coding
19-PTNLD28-TUMOR_peak_109887	chrX	152901858	152901977	+	12.58089	NA	Intergenic	Intergenic	-5980	NM_001395	1852	Hs.144879	NM_001395	HPRD:02136	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
19-PTNLD28-TUMOR_peak_38847	chr16	78562171	78562307	+	12.58089	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	428929	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_47942	chr19	17839032	17839196	+	12.58089	NA	intron (NM_018174, intron 5 of 6)	AluJr|SINE|Alu	8811	NM_018174	55201	Hs.66048	NM_018174	HPRD:10461	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
19-PTNLD28-TUMOR_peak_86976	chr6	34921506	34921660	+	12.58089	NA	intron (NM_015245, intron 1 of 23)	intron (NM_015245, intron 1 of 23)	64545	NM_015245	23294	Hs.656492	NM_015245	HPRD:10610	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_96518	chr7	153119895	153120252	+	12.57987	NA	Intergenic	Intergenic	-10754	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_62660	chr20	62735404	62735749	+	12.57987	NA	Intergenic	Intergenic	2608	NM_005286	2832	Hs.248118	NM_005286		NPBWR2	GPR8	neuropeptides B/W receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_98635	chr8	48596820	48597042	+	12.57987	NA	intron (NR_104581, intron 8 of 16)	intron (NR_104581, intron 8 of 16)	53795	NM_005195	1052	Hs.440829	NM_005195		CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
19-PTNLD28-TUMOR_peak_49599	chr19	47894830	47895093	+	12.57987	NA	Intergenic	L2c|LINE|L2	27824	NM_001301059	56917	Hs.380923	NM_020160	HPRD:14386	MEIS3	MRG2	Meis homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_59385	chr20	388272	388574	+	12.57987	NA	promoter-TSS (NM_006462)	promoter-TSS (NM_006462)	-286	NM_006462	10616	Hs.247280	NM_006462	HPRD:16643	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding
19-PTNLD28-TUMOR_peak_13172	chr10	43455762	43455872	+	12.57987	NA	Intergenic	AluJo|SINE|Alu	-37194	NR_049836	100847014		NR_049836	miRBase:MI0019116	MIR5100	-	microRNA 5100	ncRNA
19-PTNLD28-TUMOR_peak_41533	chr17	40611656	40612219	+	12.57987	NA	intron (NM_001130021, intron 1 of 21)	intron (NM_001130021, intron 1 of 21)	1075	NM_001130020	535	Hs.463074	NM_005177	HPRD:01886	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	ATPase, H+ transporting, lysosomal V0 subunit a1	protein-coding
19-PTNLD28-TUMOR_peak_62555	chr20	61661173	61661333	+	12.57987	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	7127	NR_028295	100144596	Hs.187773	NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
19-PTNLD28-TUMOR_peak_92261	chr7	44171688	44171932	+	12.57987	NA	Intergenic	Intergenic	-8641	NM_001127218	5425	Hs.306791	NM_006230	HPRD:15982	POLD2	-	polymerase (DNA directed), delta 2, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_62638	chr20	62588497	62588925	+	12.57955	NA	promoter-TSS (NM_017859)	promoter-TSS (NM_017859)	-911	NM_017859	54963	Hs.504998	NM_017859	HPRD:15607	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_378	chr1	6497163	6497374	+	12.57936	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	-7312	NR_036218	100422975		NR_036218	miRBase:MI0015864	MIR4252	-	microRNA 4252	ncRNA
19-PTNLD28-TUMOR_peak_105890	chr9	124328822	124328991	+	12.57708	NA	promoter-TSS (NM_032552)	promoter-TSS (NM_032552)	-475	NM_032552	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_41420	chr17	39113090	39113306	+	12.57708	NA	Intergenic	Intergenic	9946	NM_213656	390792	Hs.28467	NM_213656	HPRD:13750	KRT39	CK-39|K39|KA35	keratin 39	protein-coding
19-PTNLD28-TUMOR_peak_89941	chr6	150071296	150071724	+	12.57708	NA	intron (NM_001252051, intron 1 of 6)	intron (NM_001252051, intron 1 of 6)	679	NM_001252050	5110	Hs.279257	NM_005389	HPRD:08908	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_66884	chr3	15205461	15205606	+	12.57424	NA	Intergenic	SVA_D|Other|Other	41933	NR_027927	344875	Hs.722756	NR_027927	ENSG00000230524	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|VWA6	collagen, type VI, alpha 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_109644	chrX	140270145	140270286	+	12.57424	NA	3' UTR (NM_012317, exon 1 of 1)	3' UTR (NM_012317, exon 1 of 1)	1184	NM_012317	23641	Hs.45231	NM_012317	HPRD:02322	LDOC1	BCUR1|Mar7|Mart7	leucine zipper, down-regulated in cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_107778	chrX	21958607	21959055	+	12.57424	NA	5' UTR (NM_004595, exon 1 of 11)	5' UTR (NM_004595, exon 1 of 11)	140	NM_001258423	6611	Hs.724874	NM_004595	HPRD:02115	SMS	MRSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
19-PTNLD28-TUMOR_peak_109058	chrX	104195056	104195226	+	12.57424	NA	intron (NM_017416, intron 2 of 10)	L1PA3|LINE|L1	270236	NM_031274	56157	Hs.567543	NM_031274	HPRD:02257	TEX13A	-	testis expressed 13A	protein-coding
19-PTNLD28-TUMOR_peak_4343	chr1	72353801	72354402	+	12.57424	NA	intron (NM_173808, intron 2 of 6)	L1PA2|LINE|L1	-51406	NR_046218	100852409	Hs.681780	NR_046218		NEGR1-IT1	-	NEGR1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_65794	chr22	43399788	43400199	+	12.57424	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	11191	NM_001184970	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_3990	chr1	62664491	62664642	+	12.57424	NA	intron (NM_019079, intron 2 of 3)	AluJr|SINE|Alu	4092	NM_019079	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69088	chr3	73707557	73707683	+	12.57424	NA	Intergenic	Intergenic	-33548	NM_015009	23024	Hs.743998	NM_015009	HPRD:15115	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_15958	chr10	121446106	121446310	+	12.57424	NA	Intergenic	Intergenic	35326	NM_004281	9531	Hs.523309	NM_004281	HPRD:04860	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2-associated athanogene 3	protein-coding
19-PTNLD28-TUMOR_peak_76557	chr4	109720566	109720745	+	12.57424	NA	Intergenic	Intergenic	-36420	NM_001146590	64850	Hs.106576	NM_031279	HPRD:10639	ETNPPL	AGXT2L1	ethanolamine-phosphate phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_31655	chr14	90905330	90905556	+	12.57424	NA	Intergenic	AluJo|SINE|Alu	-16131	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
19-PTNLD28-TUMOR_peak_75352	chr4	55099535	55099667	+	12.57424	NA	intron (NM_006206, intron 1 of 22)	CpG	4337	NM_006206	5156	Hs.74615	NM_006206	HPRD:01429	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	platelet-derived growth factor receptor, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_48367	chr19	28894899	28895043	+	12.57424	NA	Intergenic	L2a|LINE|L2	323630	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_77570	chr4	151953240	151953398	+	12.57424	NA	Intergenic	Intergenic	-16670	NM_006726	987	Hs.480938	NM_006726	HPRD:07344	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS-responsive vesicle trafficking, beach and anchor containing	protein-coding
19-PTNLD28-TUMOR_peak_71770	chr3	151953784	151953953	+	12.57424	NA	Intergenic	Intergenic	-31961	NM_021038	4154	Hs.201858	NM_021038	HPRD:07355	MBNL1	EXP|EXP35|EXP40|EXP42|MBNL	muscleblind-like splicing regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_74975	chr4	38674822	38675076	+	12.56976	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-8700	NR_026804	79667	Hs.29725	NM_024614	HPRD:07818	KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_94985	chr7	121078520	121078742	+	12.56976	NA	Intergenic	L1P1|LINE|L1	-42209	NM_001040020	10447	Hs.434053	NM_014888	HPRD:12270	FAM3C	ILEI	family with sequence similarity 3, member C	protein-coding
19-PTNLD28-TUMOR_peak_67513	chr3	36949903	36950067	+	12.56976	NA	intron (NM_014831, intron 1 of 22)	intron (NM_014831, intron 1 of 22)	36563	NM_014831	9881	Hs.170999	NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51135	chr2	11273174	11273316	+	12.56976	NA	promoter-TSS (NM_182500)	promoter-TSS (NM_182500)	66	NM_182500	130813	Hs.406894	NM_182500	HPRD:08051	C2orf50	-	chromosome 2 open reading frame 50	protein-coding
19-PTNLD28-TUMOR_peak_43654	chr17	75426211	75426622	+	12.56976	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-20197	NM_001113496	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_26465	chr12	116821042	116821375	+	12.56710	NA	Intergenic	Intergenic	44915	NR_039683	100616309		NR_039683	miRBase:MI0016824	MIR4472-2	-	microRNA 4472-2	ncRNA
19-PTNLD28-TUMOR_peak_14564	chr10	81091566	81091807	+	12.56710	NA	Intergenic	Intergenic	-15534	NM_005729	10105	Hs.381072	NM_005729	HPRD:06839	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19-PTNLD28-TUMOR_peak_65372	chr22	37270152	37270328	+	12.56710	NA	intron (NM_013416, intron 7 of 8)	intron (NM_013416, intron 7 of 8)	13210	NM_000631	4689	Hs.474781	NM_000631	HPRD:03289	NCF4	NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_69019	chr3	72429143	72429370	+	12.56710	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	66518	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_35428	chr15	99408609	99408814	+	12.56710	NA	intron (NM_001291858, intron 2 of 20)	intron (NM_001291858, intron 2 of 20)	81056	NR_039864	100616432		NR_039864		MIR4714	-	microRNA 4714	ncRNA
19-PTNLD28-TUMOR_peak_58410	chr2	219162851	219163110	+	12.56710	NA	intron (NM_015488, intron 2 of 9)	MER5B|DNA|hAT-Charlie	-5700	NM_022152	64114	Hs.591605	NM_022152	HPRD:17884	TMBIM1	LFG3|MST100|MSTP100|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_66012	chr22	46921517	46922188	+	12.56710	NA	intron (NM_014246, intron 1 of 34)	intron (NM_014246, intron 1 of 34)	11215	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_82329	chr5	135165813	135166006	+	12.56710	NA	Intergenic	Intergenic	-4456	NM_145282	153328	Hs.412418	NM_145282	HPRD:14098	SLC25A48	-	solute carrier family 25, member 48	protein-coding
19-PTNLD28-TUMOR_peak_85992	chr6	24844427	24844600	+	12.56710	NA	intron (NM_001286447, intron 12 of 13)	intron (NM_001286447, intron 12 of 13)	33080	NM_015864	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_95147	chr7	128469645	128469787	+	12.56470	NA	promoter-TSS (NM_001458)	promoter-TSS (NM_001458)	-767	NM_001458	2318	Hs.58414	NM_001458	HPRD:00018	FLNC	ABP-280|ABP280A|ABPA|ABPL|FLN2|MFM5|MPD4	filamin C, gamma	protein-coding
19-PTNLD28-TUMOR_peak_74186	chr4	6676501	6676724	+	12.56414	NA	intron (NR_015433, intron 1 of 1)	intron (NR_015433, intron 1 of 1)	791	NR_015433	93622	Hs.6815	NM_138699		LOC93622	-	Morf4 family associated protein 1-like 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_47141	chr19	9736625	9736778	+	12.56414	NA	intron (NR_122038, intron 1 of 3)	LTR55|LTR|ERV	4543	NR_122038	284385	Hs.651747	NM_001242812	ENSG00000267106	ZNF561-AS1	C19orf82	ZNF561 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_86114	chr6	26233956	26234097	+	12.56414	NA	TTS (NM_005320)	TTS (NM_005320)	1190	NM_005320	3007	Hs.136857	NM_005320	HPRD:06764	HIST1H1D	H1.3|H1D|H1F3|H1s-2	histone cluster 1, H1d	protein-coding
19-PTNLD28-TUMOR_peak_49667	chr19	48613722	48614193	+	12.56414	NA	5' UTR (NM_001159323, exon 1 of 17)	5' UTR (NM_001159323, exon 1 of 17)	152	NM_001159322	8605	Hs.631562	NM_003706	HPRD:04673	PLA2G4C	CPLA2-gamma	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding
19-PTNLD28-TUMOR_peak_61940	chr20	50373349	50373513	+	12.56246	NA	intron (NM_006045, intron 1 of 27)	intron (NM_006045, intron 1 of 27)	11477	NM_006045	10079	Hs.649234	NM_006045	HPRD:18541	ATP9A	ATPIIA	ATPase, class II, type 9A	protein-coding
19-PTNLD28-TUMOR_peak_104275	chr9	88552273	88552589	+	12.56246	NA	Intergenic	MER61F|LTR|ERV1	-3626	NM_024635	60560	Hs.436098	NM_024635	HPRD:11291	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_14620	chr10	82212515	82212738	+	12.56187	NA	Intergenic	Intergenic	-1412	NM_030927	81619	Hs.718943	NM_030927	HPRD:18196	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
19-PTNLD28-TUMOR_peak_29760	chr14	32598454	32598598	+	12.55880	NA	intron (NM_001030055, intron 3 of 6)	Tigger15a|DNA|TcMar-Tigger	52031	NM_001030055	394	Hs.592313	NM_001173	HPRD:04060	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
19-PTNLD28-TUMOR_peak_86972	chr6	34857539	34857721	+	12.55441	NA	intron (NM_015245, intron 1 of 23)	CpG	592	NM_015245	23294	Hs.656492	NM_015245	HPRD:10610	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_17921	chr11	33723063	33723247	+	12.55374	NA	promoter-TSS (NM_001166692)	promoter-TSS (NM_001166692)	-869	NM_001166692	100131378	Hs.709466	NM_001166692		C11orf91	-	chromosome 11 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_61145	chr20	40821859	40822087	+	12.54652	NA	intron (NM_133170, intron 17 of 31)	intron (NM_133170, intron 17 of 31)	-492150	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_36792	chr16	22448239	22448632	+	12.54538	NA	non-coding (NR_027154, exon 1 of 29)	non-coding (NR_027154, exon 1 of 29)	106	NR_027154	641298	Hs.552700	NM_199284	ENSG00000237296	SMG1P1	-	SMG1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_22324	chr11	134939834	134940071	+	12.54103	NA	Intergenic	L2a|LINE|L2	633576	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	ncRNA
19-PTNLD28-TUMOR_peak_13909	chr10	65312900	65313206	+	12.54103	NA	intron (NM_001001330, intron 1 of 7)	intron (NM_001001330, intron 1 of 7)	31930	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_62155	chr20	53881347	53881635	+	12.54103	NA	Intergenic	L3|LINE|CR1	-158090	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_43281	chr17	71994895	71995022	+	12.54103	NA	Intergenic	Intergenic	-170282	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
19-PTNLD28-TUMOR_peak_43155	chr17	67444614	67444912	+	12.54103	NA	intron (NM_002758, intron 1 of 11)	intron (NM_002758, intron 1 of 11)	33925	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_72826	chr3	184561650	184561751	+	12.54103	NA	intron (NM_001009921, intron 7 of 46)	Tigger13a|DNA|TcMar-Tigger	31769	NM_015303	23355	Hs.269263	NM_015303	HPRD:11111	VPS8	KIAA0804	vacuolar protein sorting 8 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61757	chr20	48720327	48720547	+	12.54103	NA	intron (NM_001282579, intron 1 of 4)	L2a|LINE|L2	9298	NM_001257399	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
19-PTNLD28-TUMOR_peak_11593	chr10	343235	343414	+	12.54103	NA	intron (NM_014974, intron 32 of 36)	L1MA5A|LINE|L1	117390	NM_001202468	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_45854	chr18	53835477	53835660	+	12.54103	NA	Intergenic	Intergenic	-30801	NR_040025	100505474	Hs.662191	NR_040025	ENSG00000267712	LOC100505474	-	uncharacterized LOC100505474	ncRNA
19-PTNLD28-TUMOR_peak_109603	chrX	136836306	136836454	+	12.54103	NA	Intergenic	MIR3|SINE|MIR	188034	NM_003413	7547	Hs.111227	NM_003413	HPRD:02225	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
19-PTNLD28-TUMOR_peak_67705	chr3	42113873	42114008	+	12.54103	NA	Intergenic	Intergenic	-18806	NM_001042646	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_102341	chr9	18238326	18238558	+	12.54103	NA	Intergenic	MIRb|SINE|MIR	-235637	NM_052866	92949	Hs.741483	NM_052866	HPRD:16462	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4462	chr1	78536547	78536767	+	12.54103	NA	intron (NM_017655, intron 1 of 5)	intron (NM_017655, intron 1 of 5)	25068	NM_017655	54810	Hs.659356	NM_017655		GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_61632	chr20	47492453	47492607	+	12.54103	NA	Intergenic	Intergenic	-45745	NM_006420	10564	Hs.62578	NM_006420	HPRD:09250	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_27243	chr12	132195302	132195653	+	12.54103	NA	promoter-TSS (NM_001261411)	promoter-TSS (NM_001261411)	-155	NM_004592	6433	Hs.308171	NM_004592	HPRD:09055	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot family	protein-coding
19-PTNLD28-TUMOR_peak_34712	chr15	78965098	78965242	+	12.54103	NA	Intergenic	LTR18B|LTR|ERVL	-31583	NM_001256567	1143	Hs.624178	NM_000750	HPRD:00337	CHRNB4	-	cholinergic receptor, nicotinic, beta 4 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_77527	chr4	149709028	149709492	+	12.54103	NA	Intergenic	Intergenic	-345588	NM_001166104	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_43045	chr17	65289935	65290125	+	12.54103	NA	Intergenic	Intergenic	-48711	NM_014877	9931	Hs.370140	NM_014877	HPRD:10452	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
19-PTNLD28-TUMOR_peak_27205	chr12	131553683	131553861	+	12.54103	NA	intron (NM_198827, intron 13 of 24)	X5B_LINE|LINE|CR1	-95784	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_29505	chr14	23641409	23641583	+	12.54103	NA	intron (NM_012244, intron 1 of 10)	intron (NM_012244, intron 1 of 10)	11373	NM_012244	23428	Hs.596643	NM_012244	HPRD:11971	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
19-PTNLD28-TUMOR_peak_60260	chr20	24665858	24665987	+	12.54103	NA	Intergenic	Intergenic	216087	NM_024893	79953	Hs.124638	NM_024893	HPRD:12766	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
19-PTNLD28-TUMOR_peak_42490	chr17	55615042	55615163	+	12.54103	NA	intron (NM_138962, intron 7 of 13)	intron (NM_138962, intron 7 of 13)	-14144	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
19-PTNLD28-TUMOR_peak_26124	chr12	108663775	108664220	+	12.54103	NA	Intergenic	Intergenic	50442	NM_001142345	1240	Hs.197143	NM_004072	HPRD:03829	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemokine-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_24837	chr12	58789395	58789637	+	12.54103	NA	Intergenic	Intergenic	385982	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_78048	chr4	171709611	171709939	+	12.54103	NA	Intergenic	L1PA2|LINE|L1	-251978	NR_038838	100506122	Hs.434205	NR_038838	ENSG00000248872	LOC100506122	-	uncharacterized LOC100506122	ncRNA
19-PTNLD28-TUMOR_peak_21993	chr11	126944095	126944266	+	12.54103	NA	intron (NR_120578, intron 1 of 2)	intron (NR_120578, intron 1 of 2)	7283	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
19-PTNLD28-TUMOR_peak_37870	chr16	53838944	53839385	+	12.54103	NA	intron (NM_001080432, intron 1 of 8)	intron (NM_001080432, intron 1 of 8)	101289	NM_001080432	79068	Hs.528833	NM_001080432		FTO	ALKBH9	fat mass and obesity associated	protein-coding
19-PTNLD28-TUMOR_peak_11835	chr10	5734686	5734951	+	12.54103	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	8017	NM_017782	54906	Hs.610717	NM_017782	ENSG00000108021	FAM208B	C10orf18|bA318E3.2	family with sequence similarity 208, member B	protein-coding
19-PTNLD28-TUMOR_peak_59024	chr2	236674979	236675186	+	12.54103	NA	intron (NM_001037131, intron 6 of 17)	intron (NM_001037131, intron 6 of 17)	272349	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_95214	chr7	129324563	129324906	+	12.54103	NA	intron (NM_005011, intron 4 of 10)	intron (NM_005011, intron 4 of 10)	54815	NM_001040110	4899	Hs.654363	NM_005011	HPRD:02930	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_78347	chr4	186148329	186148662	+	12.53959	NA	intron (NM_031953, intron 1 of 18)	intron (NM_031953, intron 1 of 18)	17211	NM_031953	83891	Hs.369091	NM_031953	HPRD:15414	SNX25	SBBI31	sorting nexin 25	protein-coding
19-PTNLD28-TUMOR_peak_28339	chr13	53424923	53425105	+	12.53959	NA	Intergenic	CpG	-2239	NM_002590	5100	Hs.19492	NM_002590	HPRD:04660	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
19-PTNLD28-TUMOR_peak_61659	chr20	47903686	47904089	+	12.53959	NA	intron (NR_003604, intron 4 of 4)	LTR10B1|LTR|ERV1	6667	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
19-PTNLD28-TUMOR_peak_15228	chr10	102046378	102046711	+	12.53514	NA	promoter-TSS (NM_001282439)	promoter-TSS (NM_001282439)	-75	NM_001282439	282991	Hs.34906	NM_173809		BLOC1S2	BLOS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_69037	chr3	72772114	72772346	+	12.53514	NA	Intergenic	Intergenic	125368	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_17945	chr11	33891082	33891583	+	12.53514	NA	promoter-TSS (NM_001142316)	promoter-TSS (NM_001142316)	39	NM_001142316	4005	Hs.34560	NM_005574	HPRD:01586	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2 (rhombotin-like 1)	protein-coding
19-PTNLD28-TUMOR_peak_99822	chr8	102772311	102772722	+	12.53400	NA	intron (NM_001040625, intron 4 of 6)	intron (NM_001040625, intron 4 of 6)	30923	NM_032041	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_79880	chr5	53942704	53942897	+	12.53400	NA	Intergenic	Intergenic	56352	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_7042	chr1	154154713	154155004	+	12.53087	NA	intron (NM_152263, intron 2 of 9)	intron (NM_152263, intron 2 of 9)	867	NM_153649	7170	Hs.535581	NM_152263	HPRD:01840	TPM3	CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
19-PTNLD28-TUMOR_peak_57843	chr2	202831803	202831919	+	12.52886	NA	Intergenic	Intergenic	-67449	NM_003507	8324	Hs.173859	NM_003507	HPRD:04560	FZD7	FzE3	frizzled class receptor 7	protein-coding
19-PTNLD28-TUMOR_peak_46718	chr19	3290265	3290695	+	12.52886	NA	intron (NR_033342, intron 11 of 12)	intron (NR_033342, intron 11 of 12)	64997	NR_033342	60680	Hs.655747	NM_021938	HPRD:12535	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP, Elav-like family member 5	protein-coding
19-PTNLD28-TUMOR_peak_29463	chr14	23305562	23305790	+	12.52886	NA	promoter-TSS (NM_004995)	promoter-TSS (NM_004995)	-66	NM_004995	4323	Hs.2399	NM_004995	HPRD:02856	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_26685	chr12	120976492	120976666	+	12.52708	NA	intron (NM_014868, intron 1 of 16)	intron (NM_014868, intron 1 of 16)	4447	NM_014868	9921	Hs.442798	NM_014868	HPRD:11496	RNF10	RIE2	ring finger protein 10	protein-coding
19-PTNLD28-TUMOR_peak_44989	chr18	23806927	23807060	+	12.52708	NA	exon (NM_001293725, exon 1 of 15)	exon (NM_001293725, exon 1 of 15)	146	NM_005640	6875	Hs.369519	NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_101642	chr8	144655320	144655503	+	12.52682	NA	promoter-TSS (NM_001100878)	promoter-TSS (NM_001100878)	-483	NM_001100878	642475	Hs.531406	NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat-like repeat family member 6	protein-coding
19-PTNLD28-TUMOR_peak_82413	chr5	137150934	137151205	+	12.52656	NA	Intergenic	L2c|LINE|L2	14187	NR_002713	4888	Hs.643466	NR_002713	ENSG00000226306	NPY6R	NPY1RL|NPY6RP|PP2|Y2B	neuropeptide Y receptor Y6 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_41073	chr17	33572292	33572402	+	12.52656	NA	intron (NM_144975, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	2261	NM_144975	162394	Hs.709347	NM_144975		SLFN5	-	schlafen family member 5	protein-coding
19-PTNLD28-TUMOR_peak_29015	chr13	109923090	109923229	+	12.52656	NA	Intergenic	LTR7Y|LTR|ERV1	-103508	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30010	chr14	39735694	39735883	+	12.52656	NA	promoter-TSS (NM_203355)	promoter-TSS (NM_203355)	286	NM_203356	4253	Hs.509200	NM_005930	HPRD:03680	CTAGE5	MEA6|MGEA|MGEA11|MGEA6	CTAGE family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_27629	chr13	30029039	30029256	+	12.52591	NA	intron (NM_001033602, intron 7 of 13)	L1MEf|LINE|L1	26370	NM_015233	23281	Hs.22287	NM_015233		MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated tumor suppressor candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_14169	chr10	72828695	72828855	+	12.52591	NA	Intergenic	Intergenic	-143517	NM_001244889	219699	Hs.522997	NM_170744	HPRD:08487	UNC5B	UNC5H2|p53RDL1	unc-5 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_39164	chr16	85330748	85330848	+	12.52591	NA	Intergenic	Intergenic	9133	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_2741	chr1	40810325	40810577	+	12.52591	NA	Intergenic	Intergenic	-27512	NM_001852	1298	Hs.418012	NM_001852	HPRD:00373	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen, type IX, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_75776	chr4	77528392	77528555	+	12.52591	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	33752	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_93275	chr7	73721201	73721424	+	12.52591	NA	intron (NM_003388, intron 1 of 16)	intron (NM_003388, intron 1 of 16)	17507	NM_003388	7461	Hs.647018	NM_003388	HPRD:09140	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-GLY domain containing linker protein 2	protein-coding
19-PTNLD28-TUMOR_peak_90595	chr6	168756698	168756845	+	12.52591	NA	Intergenic	Intergenic	-36337	NM_214462	168002	Hs.673059	NM_214462	HPRD:12345	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled-binding antagonist of beta-catenin 2	protein-coding
19-PTNLD28-TUMOR_peak_48125	chr19	19106699	19106882	+	12.52591	NA	intron (NM_001017392, intron 8 of 10)	intron (NM_001017392, intron 8 of 10)	37590	NM_001017392	10147	Hs.515271	NM_014884	HPRD:10469	SUGP2	SFRS14	SURP and G patch domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24922	chr12	63092597	63092719	+	12.52591	NA	intron (NM_020700, intron 6 of 9)	Plat_L3|LINE|CR1	95192	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_69131	chr3	75467606	75467812	+	12.52572	NA	Intergenic	Intergenic	16557	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86, member D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_48138	chr19	19302919	19303080	+	12.52314	NA	promoter-TSS (NM_003721)	promoter-TSS (NM_003721)	-9	NM_003721	8625	Hs.153629	NM_003721	HPRD:04435	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X-associated ankyrin-containing protein	protein-coding
19-PTNLD28-TUMOR_peak_84873	chr6	3251796	3251924	+	12.51858	NA	Intergenic	Intergenic	-7302	NM_001128591	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome (prosome, macropain) assembly chaperone 4	protein-coding
19-PTNLD28-TUMOR_peak_98350	chr8	40289690	40290234	+	12.51760	NA	Intergenic	L1PA2|LINE|L1	278975	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_40752	chr17	26132602	26132798	+	12.51760	NA	Intergenic	Intergenic	-5145	NM_000625	4843	Hs.709191	NM_000625	HPRD:01225	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2, inducible	protein-coding
19-PTNLD28-TUMOR_peak_73095	chr3	188672482	188672629	+	12.51760	NA	Intergenic	Intergenic	-7127	NR_046873	100874043	Hs.616287	NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61709	chr20	48307604	48307996	+	12.51760	NA	intron (NM_004776, intron 1 of 8)	AluJo|SINE|Alu	22621	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_88728	chr6	90230482	90230681	+	12.51760	NA	intron (NM_001242813, intron 1 of 14)	AluJb|SINE|Alu	-41456	NM_001242811	22881	Hs.702213	NM_014942	HPRD:09798	ANKRD6	-	ankyrin repeat domain 6	protein-coding
19-PTNLD28-TUMOR_peak_86084	chr6	26087643	26088226	+	12.51760	NA	intron (NM_139011, intron 1 of 2)	intron (NM_139011, intron 1 of 2)	425	NM_139006	3077	Hs.233325	NM_000410	HPRD:01993	HFE	HFE1|HH|HLA-H|MVCD7|TFQTL2	hemochromatosis	protein-coding
19-PTNLD28-TUMOR_peak_35708	chr16	1282114	1282322	+	12.51760	NA	Intergenic	Intergenic	-2033	NM_024164	64499	Hs.405479	NM_024164	HPRD:10277	TPSB2	TPS2|tryptaseB|tryptaseC	tryptase beta 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_76366	chr4	100009384	100009523	+	12.51760	NA	promoter-TSS (NR_037884)	promoter-TSS (NR_037884)	486	NM_000671	128	Hs.78989	NM_000671	HPRD:00064	ADH5	ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_32465	chr15	20635846	20636068	+	12.51760	NA	intron (NR_036432, intron 25 of 25)	intron (NR_036432, intron 25 of 25)	75476	NR_036432	283755	Hs.608918	NM_001024682	HPRD:18766	HERC2P3	D15F37S4	hect domain and RLD 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_103401	chr9	65703357	65703517	+	12.51760	NA	Intergenic	MIR|SINE|MIR	-193827	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_22105	chr11	129463007	129463266	+	12.51760	NA	Intergenic	Intergenic	24028	NR_120582	101929557	Hs.385785	NR_120582		LINC01395	-	long intergenic non-protein coding RNA 1395	ncRNA
19-PTNLD28-TUMOR_peak_29056	chr13	110972380	110972818	+	12.51760	NA	intron (NM_001846, intron 3 of 47)	intron (NM_001846, intron 3 of 47)	12968	NM_001846	1284	Hs.508716	NM_001846	HPRD:00355	COL4A2	ICH|POREN2	collagen, type IV, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_95396	chr7	131633482	131633637	+	12.51760	NA	non-coding (NR_110836, exon 6 of 6)	non-coding (NR_110836, exon 6 of 6)	38580	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_103920	chr9	78327720	78328152	+	12.51181	NA	intron (NR_031679, intron 1 of 2).2	MLT1J-int|LTR|ERVL-MaLR	10808	NR_031679	100302287		NR_031679		MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
19-PTNLD28-TUMOR_peak_18282	chr11	44915683	44915945	+	12.51181	NA	intron (NM_130783, intron 2 of 8)	MIRb|SINE|MIR	55945	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_46270	chr18	72845260	72845461	+	12.51181	NA	Intergenic	Intergenic	75921	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_57864	chr2	203037577	203037898	+	12.51181	NA	intron (NM_001277372, intron 15 of 21)	intron (NM_001277372, intron 15 of 21)	65585	NM_001005782	7341	Hs.81424	NM_003352	HPRD:03554	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin-like modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_41898	chr17	44688777	44688967	+	12.51181	NA	intron (NR_040116, intron 1 of 19)	L1MB7|LINE|L1	20772	NR_033799	728806	Hs.735097	NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_96574	chr7	154113219	154113442	+	12.51181	NA	intron (NM_001290252, intron 1 of 23)	MER44D|DNA|TcMar-Tigger	111033	NM_001290252	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_100083	chr8	110225839	110225964	+	12.51181	NA	Intergenic	LTR13|LTR|ERVK	116261	NM_001128211	84955	Hs.380291	NM_032869	HPRD:16200	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_95879	chr7	140858508	140858659	+	12.51181	NA	intron (NM_001195278, intron 1 of 3)	intron (NM_001195278, intron 1 of 3)	84551	NM_001195278	100507421	Hs.283851	NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
19-PTNLD28-TUMOR_peak_77432	chr4	146290949	146291194	+	12.51181	NA	Intergenic	L1PA2|LINE|L1	-111880	NM_005900	4086	Hs.604588	NM_005900	HPRD:03356	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
19-PTNLD28-TUMOR_peak_82683	chr5	140514699	140515015	+	12.51181	NA	promoter-TSS (NM_015669)	promoter-TSS (NM_015669)	69	NM_015669	26167	Hs.119693	NM_015669	HPRD:07560	PCDHB5	PCDH-BETA5	protocadherin beta 5	protein-coding
19-PTNLD28-TUMOR_peak_44515	chr18	9779767	9779988	+	12.51181	NA	intron (NM_006868, intron 2 of 6)	intron (NM_006868, intron 2 of 6)	71649	NM_006868	11031	Hs.99528	NM_006868	HPRD:05751	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_45280	chr18	34989898	34990234	+	12.51181	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	155934	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_40874	chr17	28113041	28113429	+	12.51181	NA	intron (NM_001282130, intron 2 of 7)	intron (NM_001282130, intron 2 of 7)	-24785	NM_001282131	85464	Hs.654754	NM_033389	HPRD:09487	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_44728	chr18	13981305	13981454	+	12.51181	NA	Intergenic	L1HS|LINE|L1	-65673	NM_001291911	4158	Hs.248144	NM_000529	HPRD:06304	MC2R	ACTHR	melanocortin 2 receptor (adrenocorticotropic hormone)	protein-coding
19-PTNLD28-TUMOR_peak_82860	chr5	142344983	142345112	+	12.51181	NA	intron (NM_015071, intron 11 of 22)	LTR13|LTR|ERVK	-96572	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_94788	chr7	107519940	107520069	+	12.51181	NA	Intergenic	Intergenic	-11548	NM_001289750	1738	Hs.131711	NM_000108	HPRD:02006	DLD	DLDD|DLDH|E3|GCSL|LAD|PHE3	dihydrolipoamide dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_35192	chr15	90744485	90744974	+	12.51181	NA	5' UTR (NM_198925, exon 1 of 14)	5' UTR (NM_198925, exon 1 of 14)	167	NM_198925	10509	Hs.474935	NM_020210	HPRD:10217	SEMA4B	SEMAC|SemC	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
19-PTNLD28-TUMOR_peak_916	chr1	14057281	14057656	+	12.51181	NA	intron (NM_001135610, intron 2 of 7)	intron (NM_001135610, intron 2 of 7)	-18408	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_67475	chr3	34460408	34460561	+	12.51181	NA	Intergenic	L1PA2|LINE|L1	620421	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_38212	chr16	66312619	66312749	+	12.51181	NA	Intergenic	L1PA16|LINE|L1	-87841	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_40762	chr17	26560912	26561232	+	12.51181	NA	Intergenic	HERVE-int|LTR|ERV1	7483	NR_003064	23615	Hs.157195	NM_021093	HPRD:07589	PYY2	-	peptide YY, 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_104243	chr9	87628744	87628983	+	12.51181	NA	intron (NM_001018064, intron 15 of 16)	intron (NM_001018064, intron 15 of 16)	343571	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_36246	chr16	10718508	10718660	+	12.51181	NA	Intergenic	Intergenic	-44045	NM_001424	2013	Hs.531561	NM_001424	HPRD:11893	EMP2	NPHS10|XMP	epithelial membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_77285	chr4	141488911	141489029	+	12.51181	NA	exon (NM_021833, exon 2 of 6)	exon (NM_021833, exon 2 of 6)	989	NM_021833	7350	Hs.249211	NM_021833		UCP1	SLC25A7|UCP	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding
19-PTNLD28-TUMOR_peak_34566	chr15	75600445	75600647	+	12.51181	NA	Intergenic	Intergenic	25364	NM_001145224	653643	Hs.672474	NM_001145224		GOLGA6D	-	golgin A6 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_101448	chr8	142141150	142141384	+	12.50930	NA	intron (NM_014957, intron 1 of 22)	intron (NM_014957, intron 1 of 22)	2547	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_12678	chr10	30025855	30025987	+	12.50433	NA	Intergenic	CpG-2684	-1191	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_83011	chr5	146833082	146833307	+	12.50433	NA	promoter-TSS (NM_001387)	promoter-TSS (NM_001387)	66	NM_001387	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_44316	chr18	3250874	3251048	+	12.50433	NA	intron (NM_006471, intron 1 of 3)	L2c|LINE|L2	3433	NM_006471	10627	Hs.190086	NM_006471	HPRD:14735	MYL12A	HEL-S-24|MLCB|MRCL3|MRLC3|MYL2B	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding
19-PTNLD28-TUMOR_peak_86696	chr6	31982245	31982695	+	12.50433	NA	promoter-TSS (NM_001252204)	promoter-TSS (NM_001252204)	-102	NM_001252204	720	Hs.534847	NM_007293	HPRD:00401	C4A	C4|C4A2|C4A3|C4A4|C4A6|C4AD|C4S|CO4|CPAMD2|RG	complement component 4A (Rodgers blood group)	protein-coding
19-PTNLD28-TUMOR_peak_35626	chr16	619623	619940	+	12.50404	NA	promoter-TSS (NM_004204)	promoter-TSS (NM_004204)	-187	NM_148920	9091	Hs.741878	NM_004204	HPRD:09307	PIGQ	GPI1|c407A10.1	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding
19-PTNLD28-TUMOR_peak_16011	chr10	123357916	123358186	+	12.50404	NA	promoter-TSS (NM_001144918)	promoter-TSS (NM_001144918)	-79	NR_073009	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_1801	chr1	27930518	27930770	+	12.50404	NA	promoter-TSS (NM_001029882)	promoter-TSS (NM_001029882)	-639	NM_001029882	27245	Hs.469280	NM_001029882	HPRD:10885	AHDC1	MRD25	AT hook, DNA binding motif, containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23936	chr12	46613757	46613947	+	12.50230	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	46426	NM_001278389	81539	Hs.533770	NM_030674	HPRD:12245	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38, member 1	protein-coding
19-PTNLD28-TUMOR_peak_31421	chr14	77511996	77512175	+	12.50230	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	4693	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
19-PTNLD28-TUMOR_peak_47998	chr19	18126302	18126574	+	12.50230	NA	Intergenic	L1MB5|LINE|L1	7461	NM_001286826	27106	Hs.515249	NM_015683	HPRD:12492	ARRDC2	CLONE24945	arrestin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_97489	chr8	20928345	20928535	+	12.50230	NA	Intergenic	Intergenic	96943	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	ncRNA
19-PTNLD28-TUMOR_peak_26735	chr12	121717267	121717757	+	12.50230	NA	intron (NM_153500, intron 1 of 14)	intron (NM_153500, intron 1 of 14)	-5124	NM_001270486	10645	Hs.297343	NM_006549	HPRD:06467	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding
19-PTNLD28-TUMOR_peak_93949	chr7	92465867	92466003	+	12.50191	NA	promoter-TSS (NM_001145306)	promoter-TSS (NM_001145306)	6	NM_001145306	1021	Hs.119882	NM_001259	HPRD:04533	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_24670	chr12	56513296	56513485	+	12.49942	NA	intron (NM_032786, intron 2 of 2)	intron (NM_032786, intron 2 of 2)	1360	NM_032786	84872	Hs.632706	NM_032786	HPRD:07860	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
19-PTNLD28-TUMOR_peak_3617	chr1	54518024	54518257	+	12.49769	NA	intron (NM_004872, intron 1 of 7)	intron (NM_004872, intron 1 of 7)	971	NM_004872	9528	Hs.523262	NM_004872	HPRD:12731	TMEM59	C1orf8|HSPC001	transmembrane protein 59	protein-coding
19-PTNLD28-TUMOR_peak_80522	chr5	70500760	70500957	+	12.49477	NA	Intergenic	Intergenic	54264	NR_033968	100049076	Hs.529793	NR_033968		GUSBP9	-	glucuronidase, beta pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_43090	chr17	65989180	65989670	+	12.49439	NA	intron (NM_181655, intron 1 of 2)	CpG	340	NM_181655	284018	Hs.90790	NM_181655	HPRD:14151	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_77410	chr4	145630348	145630563	+	12.49439	NA	intron (NM_022475, intron 7 of 12)	intron (NM_022475, intron 7 of 12)	-63284	NR_037595	646576	Hs.632595	NR_037595	ENSG00000248890	HHIP-AS1	-	HHIP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2443	chr1	36834742	36834901	+	12.49254	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	16707	NM_001282547	83931	Hs.471768	NM_032017	HPRD:11359	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
19-PTNLD28-TUMOR_peak_38997	chr16	81855153	81855370	+	12.49254	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	42398	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_1865	chr1	28827635	28827806	+	12.49254	NA	TTS (NM_001048183)	TTS (NM_001048183)	-4735	NR_030725	1104	Hs.469723	NM_001269	HPRD:01559	RCC1	CHC1|RCC1-I|SNHG3-RCC1	regulator of chromosome condensation 1	protein-coding
19-PTNLD28-TUMOR_peak_54224	chr2	96067931	96068106	+	12.49254	NA	promoter-TSS (NM_016044)	promoter-TSS (NM_016044)	-430	NM_016044	51011	Hs.531247	NM_016044	HPRD:13287	FAHD2A	-	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_53885	chr2	86528998	86529258	+	12.49058	NA	intron (NM_001164730, intron 1 of 6)	intron (NM_001164730, intron 1 of 6)	35649	NM_022912	65055	Hs.368884	NM_022912	HPRD:07810	REEP1	C2orf23|HMN5B|SPG31	receptor accessory protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16316	chr10	134121882	134122099	+	12.49058	NA	promoter-TSS (NM_173575)	promoter-TSS (NM_173575)	-513	NM_173575	282974	Hs.469002	NM_173575	HPRD:18119	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
19-PTNLD28-TUMOR_peak_21426	chr11	117103236	117103420	+	12.49058	NA	promoter-TSS (NM_004716)	promoter-TSS (NM_004716)	-13	NM_207343	257160	Hs.591934	NM_207343	HPRD:16815	RNF214	-	ring finger protein 214	protein-coding
19-PTNLD28-TUMOR_peak_27143	chr12	128936013	128936267	+	12.49058	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	157503	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_24000	chr12	47670720	47670854	+	12.49058	NA	Intergenic	Intergenic	-60561	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_101504	chr8	142726213	142726340	+	12.49058	NA	Intergenic	Intergenic	-208946	NR_102364	389690	Hs.689547	NM_207414	HPRD:13480	MROH5	-	maestro heat-like repeat family member 5	protein-coding
19-PTNLD28-TUMOR_peak_50147	chr19	53168791	53168998	+	12.49058	NA	intron (NM_001277949, intron 1 of 4)	LTR10F|LTR|ERV1	24940	NM_001277945	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_16314	chr10	134120513	134120699	+	12.49058	NA	intron (NM_173575, intron 1 of 11)	CpG	871	NM_173575	282974	Hs.469002	NM_173575	HPRD:18119	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
19-PTNLD28-TUMOR_peak_70980	chr3	134050431	134050567	+	12.48881	NA	Intergenic	Intergenic	36205	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
19-PTNLD28-TUMOR_peak_39313	chr16	87942908	87943273	+	12.48835	NA	intron (NM_001739, intron 2 of 6)	intron (NM_001739, intron 2 of 6)	27022	NM_001739	763	Hs.177446	NM_001739	HPRD:00262	CA5A	CA5|CA5AD|CAV|CAVA	carbonic anhydrase VA, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_87604	chr6	43612732	43613402	+	12.48835	NA	intron (NM_152732, intron 1 of 4)	CpG	300	NM_001193341	221421	Hs.534585	NM_152732		RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head 9 homolog (Chlamydomonas)	protein-coding
19-PTNLD28-TUMOR_peak_20167	chr11	76474760	76474947	+	12.48835	NA	Intergenic	Intergenic	-18504	NM_001258210	25987	Hs.8361	NM_015516	HPRD:12152	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19-PTNLD28-TUMOR_peak_101850	chr9	13469	13898	+	12.48068	NA	TTS (NM_182905)	TTS (NM_182905)	1696	NR_051986	100287596	Hs.719844	NR_051986		DDX11L5	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5	pseudo
19-PTNLD28-TUMOR_peak_11821	chr10	5639079	5639287	+	12.47939	NA	Intergenic	Intergenic	69375	NR_037164	79754	Hs.445899	NM_024701	HPRD:10667	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
19-PTNLD28-TUMOR_peak_47786	chr19	16200380	16200609	+	12.47921	NA	intron (NM_003290, intron 5 of 7)	AluJb|SINE|Alu	13359	NM_003290	7171	Hs.631618	NM_003290	HPRD:11734	TPM4	HEL-S-108	tropomyosin 4	protein-coding
19-PTNLD28-TUMOR_peak_7147	chr1	155023984	155024734	+	12.47521	NA	promoter-TSS (NR_040772)	promoter-TSS (NR_040772)	611	NR_048578	8751	Hs.312098	NM_003815	HPRD:05674	ADAM15	MDC15	ADAM metallopeptidase domain 15	protein-coding
19-PTNLD28-TUMOR_peak_87533	chr6	42751197	42751582	+	12.47407	NA	Intergenic	CpG	-37405	NM_015349	23506	Hs.658033	NM_015349	HPRD:17180	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
19-PTNLD28-TUMOR_peak_91855	chr7	30682238	30682389	+	12.47062	NA	Intergenic	L1PA2|LINE|L1	39828	NM_001202482	1395	Hs.546246	NM_001883		CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_71219	chr3	139072895	139073023	+	12.47062	NA	intron (NM_020191, intron 6 of 7)	intron (NM_020191, intron 6 of 7)	10098	NM_020191	56945	Hs.745001	NM_020191	HPRD:10430	MRPS22	C3orf5|COXPD5|GIBT|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
19-PTNLD28-TUMOR_peak_89068	chr6	110214312	110214538	+	12.47062	NA	Intergenic	HERV3-int|LTR|ERV1	-85034	NM_005284	2830	Hs.46332	NM_005284	HPRD:02775	GPR6	-	G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_31891	chr14	96029479	96029672	+	12.47062	NA	Intergenic	MER51A|LTR|ERV1	28252	NM_016417	51218	Hs.744943	NM_016417		GLRX5	C14orf87|FLB4739|GRX5|PR01238|PRO1238	glutaredoxin 5	protein-coding
19-PTNLD28-TUMOR_peak_108482	chrX	57936614	57936973	+	12.47062	NA	exon (NM_007156, exon 1 of 1)	exon (NM_007156, exon 1 of 1)	274	NM_007156	7789	Hs.550094	NM_007156	HPRD:02210	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
19-PTNLD28-TUMOR_peak_79621	chr5	39714246	39714388	+	12.47062	NA	Intergenic	Intergenic	193784	NR_104632	101926940	Hs.436359	NR_104632	ENSG00000271334	LOC101926940	-	uncharacterized LOC101926940	ncRNA
19-PTNLD28-TUMOR_peak_39320	chr16	88003852	88004073	+	12.47062	NA	intron (NM_001173543, intron 1 of 13)	L1MC5|LINE|L1	338	NM_001173543	54971	Hs.461705	NM_017869	HPRD:16538	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
19-PTNLD28-TUMOR_peak_41121	chr17	34598465	34598641	+	12.47062	NA	Intergenic	CpG	-6557	NM_032258	84218	Hs.617010	NM_032258	HPRD:09667	TBC1D3F	TBC1D3|TBC1D3G	TBC1 domain family, member 3F	protein-coding
19-PTNLD28-TUMOR_peak_42495	chr17	55655061	55655545	+	12.47062	NA	intron (NM_138962, intron 7 of 13)	intron (NM_138962, intron 7 of 13)	30470	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_88027	chr6	53452175	53452338	+	12.47001	NA	Intergenic	Intergenic	-14183	NR_110840	101927136	Hs.509788	NR_110840	ENSG00000231683	LOC101927136	-	uncharacterized LOC101927136	ncRNA
19-PTNLD28-TUMOR_peak_86236	chr6	27500663	27500901	+	12.47001	NA	Intergenic	Intergenic	-59885	NM_007149	7738	Hs.158174	NM_007149	HPRD:03785	ZNF184	-	zinc finger protein 184	protein-coding
19-PTNLD28-TUMOR_peak_65225	chr22	33454286	33454580	+	12.47001	NA	promoter-TSS (NM_001135774)	promoter-TSS (NM_001135774)	-56	NM_001135774	8224	Hs.608750	NM_003490	HPRD:04083	SYN3	-	synapsin III	protein-coding
19-PTNLD28-TUMOR_peak_89152	chr6	112575673	112575854	+	12.47001	NA	5' UTR (NM_002290, exon 1 of 39)	5' UTR (NM_002290, exon 1 of 39)	154	NM_001105206	3910	Hs.654572	NM_002290	HPRD:02532	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin, alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_21089	chr11	110747764	110747894	+	12.47001	NA	Intergenic	Intergenic	-163917	NM_001258418	57569	Hs.6136	NM_020809	HPRD:10657	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
19-PTNLD28-TUMOR_peak_92196	chr7	43148137	43148248	+	12.47001	NA	Intergenic	MER74B|LTR|ERVL	-4006	NM_001287059	23072	Hs.164453	NM_015052		HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_44380	chr18	5868358	5868532	+	12.47001	NA	Intergenic	Intergenic	23658	NM_001080209	645369	Hs.346566	NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
19-PTNLD28-TUMOR_peak_93090	chr7	70889497	70889649	+	12.47001	NA	intron (NM_022479, intron 5 of 10)	intron (NM_022479, intron 5 of 10)	-116817	NR_037477	100500836		NR_037477	miRBase:MI0016419	MIR3914-1	-	microRNA 3914-1	ncRNA
19-PTNLD28-TUMOR_peak_53155	chr2	65780469	65780628	+	12.47001	NA	Intergenic	Intergenic	-120892	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_33943	chr15	64126157	64126309	+	12.47001	NA	promoter-TSS (NM_003922)	promoter-TSS (NM_003922)	-86	NM_003922	8925	Hs.210385	NM_003922	HPRD:06894	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
19-PTNLD28-TUMOR_peak_26393	chr12	113468711	113468996	+	12.47001	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-26809	NM_004416	1840	Hs.372152	NM_004416	HPRD:03991	DTX1	hDx-1	deltex 1, E3 ubiquitin ligase	protein-coding
19-PTNLD28-TUMOR_peak_53055	chr2	64449603	64449789	+	12.47001	NA	Intergenic	Intergenic	-5839	NR_120420	100507006	Hs.442789	NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
19-PTNLD28-TUMOR_peak_12514	chr10	25810108	25810222	+	12.47001	NA	intron (NM_020752, intron 5 of 10)	L1PA2|LINE|L1	-130476	NR_108068	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_33415	chr15	45295965	45296080	+	12.47001	NA	Intergenic	Intergenic	-19280	NM_003104	6652	Hs.878	NM_003104		SORD	HEL-S-95n|SORD1	sorbitol dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_16125	chr10	126254494	126254734	+	12.47001	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	104273	NM_001167880	64077	Hs.527748	NM_022126	HPRD:17274	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_51703	chr2	27145697	27145854	+	12.47001	NA	intron (NM_001253723, intron 2 of 12)	intron (NM_001253723, intron 2 of 12)	-47750	NM_012326	22924	Hs.515860	NM_012326	HPRD:16156	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_105682	chr9	118836030	118836288	+	12.47001	NA	Intergenic	Intergenic	-79912	NM_002581	5069	Hs.643599	NM_002581	HPRD:01448	PAPPA	ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1	pregnancy-associated plasma protein A, pappalysin 1	protein-coding
19-PTNLD28-TUMOR_peak_23867	chr12	43621889	43622161	+	12.47001	NA	Intergenic	L1PA3|LINE|L1	323699	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_42931	chr17	63019304	63019457	+	12.47001	NA	intron (NM_006572, intron 2 of 3)	Cheshire|DNA|hAT-Charlie	32512	NM_001282425	10672	Hs.515018	NM_006572	HPRD:05100	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
19-PTNLD28-TUMOR_peak_42084	chr17	46882307	46882442	+	12.47001	NA	intron (NM_001130918, intron 1 of 15)	intron (NM_001130918, intron 1 of 15)	-10688	NM_173623	284076	Hs.91930	NM_173623	HPRD:08763	TTLL6	TTL.6	tubulin tyrosine ligase-like family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_102403	chr9	19934532	19934851	+	12.47001	NA	Intergenic	CpG	-147674	NM_020344	25769	Hs.283014	NM_020344	HPRD:15351	SLC24A2	NCKX2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_48359	chr19	28690187	28690474	+	12.47001	NA	Intergenic	Intergenic	-405482	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
19-PTNLD28-TUMOR_peak_65579	chr22	39833330	39833442	+	12.47001	NA	TTS (NM_153497)	TTS (NM_153497)	5221	NR_040535	100506472	Hs.729080	NR_040535		LOC100506472	-	uncharacterized LOC100506472	ncRNA
19-PTNLD28-TUMOR_peak_93644	chr7	80270285	80270403	+	12.47001	NA	intron (NM_001001548, intron 1 of 14)	intron (NM_001001548, intron 1 of 14)	2512	NM_000072	948	Hs.120949	NM_000072	HPRD:01430	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_8796	chr1	183932190	183932329	+	12.47001	NA	intron (NM_015101, intron 6 of 11)	intron (NM_015101, intron 6 of 11)	74604	NM_015101	23127	Hs.387995	NM_015101	HPRD:13583	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_64773	chr22	24899228	24899354	+	12.47001	NA	intron (NM_016327, intron 3 of 9)	HAL1|LINE|L1	8040	NM_016327	51733	Hs.731656	NM_016327	HPRD:09451	UPB1	BUP1	ureidopropionase, beta	protein-coding
19-PTNLD28-TUMOR_peak_82467	chr5	137977657	137977838	+	12.46842	NA	Intergenic	Intergenic	-66429	NM_004134	3313	Hs.184233	NM_004134	HPRD:02770	HSPA9	CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74	heat shock 70kDa protein 9 (mortalin)	protein-coding
19-PTNLD28-TUMOR_peak_22695	chr12	6147363	6147533	+	12.46842	NA	intron (NM_000552, intron 18 of 51)	intron (NM_000552, intron 18 of 51)	86388	NM_000552	7450	Hs.440848	NM_000552	HPRD:01906	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
19-PTNLD28-TUMOR_peak_88077	chr6	54667666	54667797	+	12.46842	NA	Intergenic	Intergenic	-43838	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_47036	chr19	8298339	8298571	+	12.46842	NA	intron (NM_024552, intron 2 of 11)	intron (NM_024552, intron 2 of 11)	24238	NM_024552	79603	Hs.515111	NM_024552	HPRD:13962	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
19-PTNLD28-TUMOR_peak_81573	chr5	112294274	112294439	+	12.46842	NA	Intergenic	Intergenic	-18051	NR_038352	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_104956	chr9	101761239	101761434	+	12.46842	NA	intron (NM_001855, intron 6 of 41)	intron (NM_001855, intron 6 of 41)	55341	NM_001855	1306	Hs.409034	NM_001855	HPRD:00380	COL15A1	-	collagen, type XV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_33180	chr15	40714223	40714414	+	12.46842	NA	TTS (NM_001159508)	TTS (NM_001159508)	16632	NM_001159508	3712	Hs.513646	NM_002225	HPRD:09516	IVD	ACAD2	isovaleryl-CoA dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_97655	chr8	23020558	23020665	+	12.46527	NA	intron (NM_003840, intron 1 of 8)	AluSq2|SINE|Alu	932	NM_003840	8793	Hs.213467	NM_003840	HPRD:04682	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain	protein-coding
19-PTNLD28-TUMOR_peak_10096	chr1	219345005	219345161	+	12.46527	NA	intron (NR_038845, intron 1 of 4)	intron (NR_038845, intron 1 of 4)	2047	NR_038845	643723	Hs.519774	NR_038845		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_11560	chr1	249120407	249120554	+	12.46527	NA	promoter-TSS (NR_036070)	promoter-TSS (NR_036070)	-96	NR_036070	100422879		NR_036070	miRBase:MI0014140	MIR3124	-	microRNA 3124	ncRNA
19-PTNLD28-TUMOR_peak_39208	chr16	85644562	85644731	+	12.46465	NA	promoter-TSS (NM_001134473)	promoter-TSS (NM_001134473)	-383	NM_001134473	23199	Hs.461647	NM_014615	HPRD:11066	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_35663	chr16	812079	812463	+	12.46465	NA	intron (NM_005823, intron 2 of 17)	intron (NM_005823, intron 2 of 17)	1198	NM_013404	10232	Hs.408488	NM_005823	HPRD:03030	MSLN	MPF|SMRP	mesothelin	protein-coding
19-PTNLD28-TUMOR_peak_48561	chr19	33864835	33865214	+	12.46272	NA	promoter-TSS (NM_001252296)	promoter-TSS (NM_001252296)	-406	NM_001252296	1054	Hs.429666	NM_001806	HPRD:00738	CEBPG	GPE1BP|IG/EBP-1	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding
19-PTNLD28-TUMOR_peak_4419	chr1	77333884	77334304	+	12.46272	NA	intron (NM_030965, intron 1 of 4)	CpG	908	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_1916	chr1	29565733	29566078	+	12.46272	NA	intron (NM_133177, intron 1 of 30)	intron (NM_133177, intron 1 of 30)	2877	NM_001195001	10076	Hs.19718	NM_005704	HPRD:03908	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase, receptor type, U	protein-coding
19-PTNLD28-TUMOR_peak_53578	chr2	74781873	74782491	+	12.46272	NA	intron (NM_001381, intron 1 of 4)	CpG	670	NM_001381	1796	Hs.103854	NM_001381	HPRD:04228	DOK1	P62DOK	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	protein-coding
19-PTNLD28-TUMOR_peak_95385	chr7	131374026	131374162	+	12.45841	NA	Intergenic	Intergenic	-132718	NM_001018111	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_7879	chr1	165137831	165138078	+	12.45710	NA	Intergenic	L2c|LINE|L2	187524	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_37269	chr16	30772661	30772890	+	12.45691	NA	promoter-TSS (NM_001207034)	promoter-TSS (NM_001207034)	-158	NM_001207033	9810	Hs.65238	NM_014771	HPRD:07411	RNF40	BRE1B|RBP95|STARING	ring finger protein 40, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_106219	chr9	130730395	130730625	+	12.45691	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	12302	NM_001035254	399665	Hs.535972	NM_203305	HPRD:13262	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102, member A	protein-coding
19-PTNLD28-TUMOR_peak_16518	chr11	818829	819043	+	12.45690	NA	promoter-TSS (NM_020376)	promoter-TSS (NM_020376)	35	NM_020376	57104	Hs.654697	NM_020376	HPRD:11443	PNPLA2	1110001C14Rik|ATGL|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin-like phospholipase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_94557	chr7	102323100	102323290	+	12.45490	NA	Intergenic	L2|LINE|L2	-11019	NM_032959	246721	Hs.610255	NM_032958	HPRD:17878	POLR2J2	HRPB11B|RPB11b1	polymerase (RNA) II (DNA directed) polypeptide J2	protein-coding
19-PTNLD28-TUMOR_peak_56967	chr2	172963639	172963925	+	12.45486	NA	TTS (NM_004405)	TTS (NM_004405)	3696	NM_004405	1746	Hs.419	NM_004405	HPRD:00527	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_41450	chr17	39705570	39705793	+	12.45317	NA	TTS (NR_038442)	TTS (NR_038442)	5066	NR_038442	147093	Hs.680576	NR_038442	ENSG00000226629	LINC00974	-	long intergenic non-protein coding RNA 974	ncRNA
19-PTNLD28-TUMOR_peak_30297	chr14	52591569	52592012	+	12.44991	NA	Intergenic	Intergenic	-55844	NM_007361	22795	Hs.369840	NM_007361	HPRD:05654	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
19-PTNLD28-TUMOR_peak_104450	chr9	91752849	91753047	+	12.44991	NA	intron (NM_016848, intron 1 of 11)	intron (NM_016848, intron 1 of 11)	40734	NM_016848	53358	Hs.292737	NM_016848		SHC3	N-Shc|NSHC|RAI|SHCC	SHC (Src homology 2 domain containing) transforming protein 3	protein-coding
19-PTNLD28-TUMOR_peak_105146	chr9	108544814	108544937	+	12.44991	NA	Intergenic	L1PA2|LINE|L1	88069	NM_018112	55151	Hs.411925	NM_018112	HPRD:15538	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
19-PTNLD28-TUMOR_peak_20060	chr11	75083366	75083519	+	12.44991	NA	Intergenic	Intergenic	-20567	NM_004041	408	Hs.503284	NM_004041	HPRD:00146	ARRB1	ARB1|ARR1	arrestin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_108211	chrX	47974138	47974236	+	12.44991	NA	intron (NR_028366, intron 5 of 7)	SVA_D|Other|Other	6820	NR_028366	280657	Hs.511998	NM_173357	HPRD:18109	SSX6	SSXP2|dJ54B20.1|psiSSX2	synovial sarcoma, X breakpoint 6 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_42814	chr17	61502885	61503026	+	12.44991	NA	3' UTR (NM_025185, exon 25 of 25)	3' UTR (NM_025185, exon 25 of 25)	15252	NM_001017917	1534	Hs.355264	NM_001915	HPRD:02485	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
19-PTNLD28-TUMOR_peak_67010	chr3	17791361	17791674	+	12.44991	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-9118	NM_014744	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_56117	chr2	143764036	143764241	+	12.44991	NA	intron (NM_003937, intron 10 of 13)	L1PA2|LINE|L1	-122761	NM_018460	55843	Hs.171011	NM_018460	HPRD:06447	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
19-PTNLD28-TUMOR_peak_83379	chr5	153844892	153845038	+	12.44991	NA	Intergenic	Intergenic	12859	NM_004821	9421	Hs.152531	NM_004821	HPRD:03871	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_66121	chr22	50936762	50937304	+	12.44991	NA	Intergenic	L2b|LINE|L2	9102	NM_033200	91289	Hs.150540	NM_033200	HPRD:12519	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_54733	chr2	107898280	107898519	+	12.44991	NA	Intergenic	Intergenic	-394836	NM_032528	84620	Hs.98265	NM_032528	HPRD:12237	ST6GAL2	SIAT2|ST6GalII	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2	protein-coding
19-PTNLD28-TUMOR_peak_69219	chr3	82029852	82030021	+	12.44991	NA	Intergenic	Intergenic	-218986	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_49016	chr19	39984092	39984227	+	12.44991	NA	Intergenic	LTR7|LTR|ERV1	-5398	NM_203486	10683	Hs.127792	NM_016941	HPRD:04140	DLL3	SCDO1	delta-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_928	chr1	14435531	14435753	+	12.44991	NA	Intergenic	Intergenic	359766	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_20233	chr11	77867537	77867848	+	12.44991	NA	intron (NR_102281, intron 2 of 2)	intron (NR_102281, intron 2 of 2)	16853	NR_102280	100289388	Hs.628183	NM_203432	ENSG00000246174	KCTD21-AS1	-	KCTD21 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82501	chr5	138474648	138474764	+	12.44991	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	59359	NM_022464	64374	Hs.483521	NM_022464	HPRD:12150	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_73519	chr3	195619851	195619996	+	12.44820	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	2509	NM_001010938	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_50483	chr19	57683148	57683261	+	12.44804	NA	Intergenic	Intergenic	-4348	NM_001012729	503835	Hs.585857	NM_001012729		DUXA	-	double homeobox A	protein-coding
19-PTNLD28-TUMOR_peak_1758	chr1	27668450	27668620	+	12.44804	NA	promoter-TSS (NM_001193308)	promoter-TSS (NM_001193308)	52	NM_032872	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_5190	chr1	101095073	101095280	+	12.44655	NA	intron (NR_038914, intron 3 of 4)	intron (NR_038914, intron 3 of 4)	17384	NR_038914	100128787	Hs.536050	NR_038914		LINC01349	-	long intergenic non-protein coding RNA 1349	ncRNA
19-PTNLD28-TUMOR_peak_70244	chr3	123438094	123438368	+	12.44655	NA	intron (NM_053025, intron 13 of 33)	intron (NM_053025, intron 13 of 33)	29740	NR_046629	100873940	Hs.667316	NR_046629		MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_49499	chr19	46998906	46999163	+	12.44655	NA	5' UTR (NM_020709, exon 1 of 1)	5' UTR (NM_020709, exon 1 of 1)	135	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
19-PTNLD28-TUMOR_peak_39743	chr17	3563229	3563486	+	12.44655	NA	intron (NM_001031681, intron 11 of 12)	intron (NM_001031681, intron 11 of 12)	8616	NM_014604	30851	Hs.12956	NM_014604	HPRD:18160	TAX1BP3	TIP-1	Tax1 (human T-cell leukemia virus type I) binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_17280	chr11	12989670	12989853	+	12.44655	NA	Intergenic	Intergenic	21334	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
19-PTNLD28-TUMOR_peak_71262	chr3	139742550	139742796	+	12.44655	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	88646	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_82279	chr5	134348871	134349000	+	12.44655	NA	Intergenic	Intergenic	-20035	NM_001277348	100996485		NM_001277348	ENSG00000224186	C5orf66	-	chromosome 5 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_82136	chr5	132112854	132113006	+	12.44655	NA	5' UTR (NM_001098811, exon 1 of 10)	5' UTR (NM_001098811, exon 1 of 10)	137	NM_001098812	23176	Hs.522057	NM_015146	ENSG00000164402	SEPT8	SEP2	septin 8	protein-coding
19-PTNLD28-TUMOR_peak_94296	chr7	99971580	99971760	+	12.44480	NA	exon (NM_178273, exon 2 of 5)	exon (NM_178273, exon 2 of 5)	602	NM_178273	29992	Hs.444407	NM_013439	HPRD:05631	PILRA	FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_66747	chr3	13560647	13560817	+	12.44480	NA	Intergenic	Intergenic	-29893	NM_001998	2199	Hs.198862	NM_001998	HPRD:00630	FBLN2	-	fibulin 2	protein-coding
19-PTNLD28-TUMOR_peak_19345	chr11	65760911	65761200	+	12.44480	NA	Intergenic	AluYf4|SINE|Alu	-8495	NM_003860	8815	Hs.433759	NM_003860	HPRD:04817	BANF1	BAF|BCRP1|D14S1460|NGPS	barrier to autointegration factor 1	protein-coding
19-PTNLD28-TUMOR_peak_50421	chr19	56154396	56154659	+	12.43419	NA	promoter-TSS (NM_016535)	promoter-TSS (NM_016535)	-459	NM_016535	51545	Hs.20768	NM_016535	HPRD:15858	ZNF581	-	zinc finger protein 581	protein-coding
19-PTNLD28-TUMOR_peak_93085	chr7	70768618	70768744	+	12.43080	NA	intron (NM_022479, intron 1 of 10)	intron (NM_022479, intron 1 of 10)	-3979	NR_037479	100500920		NR_037479		MIR3914-2	-	microRNA 3914-2	ncRNA
19-PTNLD28-TUMOR_peak_42765	chr17	60548164	60548381	+	12.43080	NA	Intergenic	L2c|LINE|L2	-8114	NM_006852	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_99048	chr8	67434270	67434442	+	12.43080	NA	Intergenic	Intergenic	28865	NM_152765	254778	Hs.268869	NM_152765	HPRD:14565	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_70146	chr3	122136013	122136196	+	12.43062	NA	intron (NR_125405, intron 1 of 2)	AluSz|SINE|Alu	1051	NR_125405	102723582	Hs.675056	NR_125405		LOC102723582	-	uncharacterized LOC102723582	ncRNA
19-PTNLD28-TUMOR_peak_46665	chr19	2494969	2495199	+	12.43000	NA	Intergenic	CpG	18961	NM_015675	4616	Hs.110571	NM_015675	HPRD:05382	GADD45B	GADD45BETA|MYD118	growth arrest and DNA-damage-inducible, beta	protein-coding
19-PTNLD28-TUMOR_peak_68543	chr3	57541922	57542122	+	12.42818	NA	promoter-TSS (NM_177966)	promoter-TSS (NM_177966)	41	NM_177966	201626	Hs.572993	NM_177966		PDE12	2'-PDE	phosphodiesterase 12	protein-coding
19-PTNLD28-TUMOR_peak_46435	chr18	77711615	77712034	+	12.42412	NA	promoter-TSS (NM_025078)	promoter-TSS (NM_025078)	-171	NM_001146343	80148	Hs.288284	NM_025078	HPRD:11454	PQLC1	-	PQ loop repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43342	chr17	72766900	72767113	+	12.42412	NA	3' UTR (NM_015654, exon 7 of 7)	3' UTR (NM_015654, exon 7 of 7)	5464	NM_015654	26151	Hs.144058	NM_015654	HPRD:13259	NAT9	EBSP, hNATL	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_84752	chr6	1724433	1724623	+	12.42412	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	113847	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_109098	chrX	106920009	106920270	+	12.42412	NA	Intergenic	Intergenic	39572	NM_001015881	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_34409	chr15	73343930	73344283	+	12.41940	NA	promoter-TSS (NM_001172624)	promoter-TSS (NM_001172624)	-719	NM_002499	4756	Hs.388613	NM_002499	HPRD:03549	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
19-PTNLD28-TUMOR_peak_49341	chr19	45324183	45324325	+	12.41940	NA	3' UTR (NM_005581, exon 15 of 15)	3' UTR (NM_005581, exon 15 of 15)	11938	NM_001013257	4059	Hs.625725	NM_005581	HPRD:00197	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
19-PTNLD28-TUMOR_peak_74090	chr4	4802807	4803092	+	12.41940	NA	Intergenic	MIR|SINE|MIR	-43215	NR_125765	103695434	Hs.550830	NR_125765		LINC01396	-	long intergenic non-protein coding RNA 1396	ncRNA
19-PTNLD28-TUMOR_peak_49370	chr19	45667945	45668192	+	12.41940	NA	intron (NM_001270892, intron 2 of 4)	intron (NM_001270892, intron 2 of 4)	-4660	NM_198478	284353	Hs.299256	NM_198478	HPRD:11393	NKPD1	-	NTPase, KAP family P-loop domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58794	chr2	231833873	231834374	+	12.41940	NA	Intergenic	MER51A|LTR|ERV1	26624	NR_033879	348761	Hs.404807	NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_46086	chr18	60253552	60253661	+	12.41940	NA	Intergenic	Intergenic	62948	NM_017742	54877	Hs.114191	NM_017742	HPRD:11696	ZCCHC2	C18orf49	zinc finger, CCHC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_53302	chr2	69845514	69845760	+	12.41940	NA	intron (NM_014911, intron 2 of 21)	intron (NM_014911, intron 2 of 21)	25340	NM_014911	22848	Hs.468878	NM_014911		AAK1	-	AP2 associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_92341	chr7	45122766	45122930	+	12.41940	NA	exon (NM_001146334, exon 2 of 8)	exon (NM_001146334, exon 2 of 8)	5645	NM_001146334	23148	Hs.96633	NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
19-PTNLD28-TUMOR_peak_7345	chr1	156661508	156661663	+	12.41809	NA	Intergenic	Intergenic	13874	NM_001878	1382	Hs.405662	NM_001878	HPRD:08353	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_22806	chr12	6876046	6876378	+	12.41633	NA	intron (NM_002824, intron 1 of 4)	CpG	671	NM_002824	5763	Hs.504613	NM_002824	HPRD:01344	PTMS	ParaT	parathymosin	protein-coding
19-PTNLD28-TUMOR_peak_51693	chr2	26968746	26968895	+	12.41629	NA	Intergenic	Intergenic	-18322	NM_017877	54978	Hs.1594	NM_017877	HPRD:12808	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35, member F6	protein-coding
19-PTNLD28-TUMOR_peak_75833	chr4	78314300	78314515	+	12.41629	NA	Intergenic	HERVK3-int|LTR|ERVK	-118500	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_95640	chr7	137341157	137341277	+	12.41629	NA	exon (NM_004717, exon 4 of 34)	exon (NM_004717, exon 4 of 34)	190392	NM_004717	9162	Hs.242947	NM_004717	HPRD:07238	DGKI	DGK-IOTA	diacylglycerol kinase, iota	protein-coding
19-PTNLD28-TUMOR_peak_107366	chrX	2180205	2180405	+	12.41629	NA	intron (NM_145177, intron 5 of 6)	intron (NM_145177, intron 5 of 6)	238275	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52356	chr2	42812983	42813377	+	12.41629	NA	intron (NM_001282755, intron 4 of 17)	AluSq2|SINE|Alu	17523	NM_020744	57504	Hs.435413	NM_020744	HPRD:12359	MTA3	-	metastasis associated 1 family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_31174	chr14	72374823	72375158	+	12.41629	NA	Intergenic	Intergenic	-23827	NM_001204423	9628	Hs.509872	NM_004296	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
19-PTNLD28-TUMOR_peak_31562	chr14	85715375	85715548	+	12.41629	NA	Intergenic	LFSINE_Vert|SINE|SINE	-144762	NR_102737	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_17546	chr11	19115608	19115737	+	12.41629	NA	Intergenic	Intergenic	-23020	NM_019028	54503	Hs.188569	NM_019028	HPRD:15710	ZDHHC13	HIP14L|HIP3RP	zinc finger, DHHC-type containing 13	protein-coding
19-PTNLD28-TUMOR_peak_34199	chr15	69277025	69277197	+	12.41629	NA	intron (NR_033672, intron 2 of 16)	LTR75|LTR|ERVL	-29923	NM_024505	79400	Hs.657932	NM_024505	HPRD:07359	NOX5	-	NADPH oxidase, EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_40610	chr17	20395584	20395713	+	12.41629	NA	Intergenic	Intergenic	12163	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_28245	chr13	50433773	50433960	+	12.41629	NA	Intergenic	ERVL-E-int|LTR|ERVL	-30679	NR_003268	220429	Hs.448219	NR_003268	ENSG00000181358	CTAGE10P	-	CTAGE family, member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_5804	chr1	116876798	116877002	+	12.41629	NA	Intergenic	Intergenic	-38895	NM_000701	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_2295	chr1	35099250	35099538	+	12.41629	NA	Intergenic	HERVH-int|LTR|ERV1	-121254	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_67049	chr3	18900402	18900531	+	12.41629	NA	Intergenic	Intergenic	-289551	NM_144633	131096	Hs.475656	NM_144633	HPRD:10006	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
19-PTNLD28-TUMOR_peak_110102	chrY	2130205	2130405	+	12.41629	NA	intron (NM_145177, intron 5 of 6).2	intron (NM_145177, intron 5 of 6).2	238275	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_2873	chr1	42160885	42161258	+	12.41629	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-210727	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_54977	chr2	112485498	112485703	+	12.41629	NA	Intergenic	Intergenic	156141	NM_022662	64682	Hs.436527	NM_022662	HPRD:09769	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_64219	chr22	17849448	17849785	+	12.41629	NA	intron (NM_001290046, intron 1 of 18)	CpG	8777	NM_001290046	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	cat eye syndrome chromosome region, candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_82370	chr5	135979625	135979813	+	12.41629	NA	Intergenic	Intergenic	-278555	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_102515	chr9	24230455	24230667	+	12.41629	NA	Intergenic	L1PA3|LINE|L1	315113	NM_001271706	100129669	Hs.573530	NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
19-PTNLD28-TUMOR_peak_97396	chr8	19009569	19010140	+	12.41629	NA	Intergenic	Intergenic	93178	NR_038919	100128993	Hs.697742	NR_038919		LOC100128993	-	uncharacterized LOC100128993	ncRNA
19-PTNLD28-TUMOR_peak_25078	chr12	66628789	66629312	+	12.41629	NA	intron (NM_001142523, intron 7 of 10)	intron (NM_001142523, intron 7 of 10)	-15812	NR_106757	102465249		NR_106757		MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
19-PTNLD28-TUMOR_peak_74058	chr4	4191190	4191449	+	12.41629	NA	intron (NM_177998, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	37302	NM_177998	133060	Hs.534544	NM_177998	HPRD:07421	OTOP1	-	otopetrin 1	protein-coding
19-PTNLD28-TUMOR_peak_23329	chr12	19932429	19932632	+	12.41629	NA	Intergenic	L1PREC2|LINE|L1	-235089	NR_040098	100506393	Hs.658356	NR_040098	ENSG00000256287	LOC100506393	-	uncharacterized LOC100506393	ncRNA
19-PTNLD28-TUMOR_peak_63019	chr21	29094983	29095189	+	12.41499	NA	intron (NR_024357, intron 1 of 3)	MER50-int|LTR|ERV1	388	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
19-PTNLD28-TUMOR_peak_101659	chr8	144816229	144816402	+	12.41438	NA	promoter-TSS (NR_039810)	promoter-TSS (NR_039810)	5	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	-	FAM83H antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_24374	chr12	52916492	52916648	+	12.41122	NA	Intergenic	Intergenic	-2327	NM_000424	3852	Hs.433845	NM_000424	HPRD:01010	KRT5	CK5|DDD|DDD1|EBS2|K5|KRT5A	keratin 5	protein-coding
19-PTNLD28-TUMOR_peak_110217	chrY	13627031	13627191	+	12.40767	NA	Intergenic	HERVL-int|LTR|ERVL	906278	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_107564	chrX	12965386	12965596	+	12.40767	NA	Intergenic	Intergenic	-4072	NR_030727	349408	Hs.685035	NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1759	chr1	27669530	27669970	+	12.40767	NA	intron (NM_032872, intron 1 of 14)	intron (NM_032872, intron 1 of 14)	1267	NM_032872	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_32380	chr14	106114056	106114183	+	12.40767	NA	Intergenic	Intergenic	7614	NR_107059	102466889		NR_107059		MIR8071-2	hsa-mir-8071-2	microRNA 8071-2	ncRNA
19-PTNLD28-TUMOR_peak_42940	chr17	63096544	63096653	+	12.40767	NA	promoter-TSS (NR_110801)	promoter-TSS (NR_110801)	-332	NR_110801	100507002	Hs.729924	NR_110801	ENSG00000263470	LOC100507002	-	uncharacterized LOC100507002	ncRNA
19-PTNLD28-TUMOR_peak_99425	chr8	86849206	86849375	+	12.40767	NA	Intergenic	Intergenic	-9119	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_39167	chr16	85355371	85355872	+	12.40767	NA	Intergenic	Intergenic	-15690	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_1549	chr1	24645832	24646252	+	12.40767	NA	promoter-TSS (NM_001195010)	promoter-TSS (NM_001195010)	-14	NM_001195010	57822	Hs.657920	NM_021180	HPRD:12210	GRHL3	SOM|TFCP2L4|VWS2	grainyhead-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_63947	chr21	45720395	45720588	+	12.40530	NA	intron (NM_002626, intron 1 of 21)	CpG	574	NM_001002021	5211	Hs.255093	NM_002626	HPRD:01385	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver	protein-coding
19-PTNLD28-TUMOR_peak_227	chr1	2322506	2322746	+	12.40530	NA	promoter-TSS (NM_007033)	promoter-TSS (NM_007033)	564	NR_125361	79906	Hs.642701	NM_024848	HPRD:07843	MORN1	-	MORN repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_18255	chr11	44594846	44595009	+	12.40530	NA	intron (NM_001024844, intron 1 of 8)	intron (NM_001024844, intron 1 of 8)	7786	NM_001024844	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_84026	chr5	172359460	172359600	+	12.40450	NA	exon (NM_001031711, exon 8 of 10)	exon (NM_001031711, exon 8 of 10)	26248	NR_026683	100268168	Hs.519766	NR_026682	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
19-PTNLD28-TUMOR_peak_82575	chr5	139229683	139229919	+	12.40230	NA	intron (NM_001184935, intron 7 of 7)	MIRb|SINE|MIR	54395	NM_032289	84249	Hs.21963	NM_032289	HPRD:15190	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_30464	chr14	56219859	56220109	+	12.40230	NA	Intergenic	Intergenic	-12979	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_13199	chr10	43724839	43725387	+	12.40230	NA	promoter-TSS (NM_001282862)	promoter-TSS (NM_001282862)	74	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_60579	chr20	32241175	32241293	+	12.40230	NA	Intergenic	Intergenic	-8858	NM_080825	128864	Hs.324104	NM_080825	HPRD:12749	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
19-PTNLD28-TUMOR_peak_18509	chr11	48013009	48013301	+	12.40230	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	11045	NM_002843	5795	Hs.318547	NM_002843	HPRD:02955	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type, J	protein-coding
19-PTNLD28-TUMOR_peak_16045	chr10	124067235	124067418	+	12.40230	NA	intron (NM_144587, intron 10 of 15)	intron (NM_144587, intron 10 of 15)	36505	NM_144587	118663	Hs.422466	NM_144587	HPRD:12594	BTBD16	C10orf87	BTB (POZ) domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_82854	chr5	142252397	142252594	+	12.40230	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	-4020	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52435	chr2	43683536	43683648	+	12.40230	NA	intron (NM_022065, intron 26 of 37)	MIRb|SINE|MIR	139521	NM_001083953	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_28268	chr13	51796417	51796704	+	12.39981	NA	promoter-TSS (NM_001242312)	promoter-TSS (NM_001242312)	90	NM_145019	220108	Hs.71913	NM_145019	HPRD:08704	FAM124A	-	family with sequence similarity 124A	protein-coding
19-PTNLD28-TUMOR_peak_105277	chr9	111577586	111577693	+	12.39981	NA	Intergenic	Intergenic	40636	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_53845	chr2	86054647	86054757	+	12.39981	NA	TTS (NR_038888)	TTS (NR_038888)	12449	NR_038888	284950	Hs.570227	NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
19-PTNLD28-TUMOR_peak_42420	chr17	54120603	54120743	+	12.39981	NA	Intergenic	L2a|LINE|L2	-110163	NM_153228	162282	Hs.673040	NM_153228	HPRD:08238	ANKFN1	-	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_14411	chr10	77247121	77247554	+	12.39981	NA	Intergenic	Intergenic	78422	NR_110304	101929234	Hs.694695	NR_110304	ENSG00000272692	LOC101929234	-	uncharacterized LOC101929234	ncRNA
19-PTNLD28-TUMOR_peak_11297	chr1	241694651	241694888	+	12.39981	NA	promoter-TSS (NM_003679)	promoter-TSS (NM_003679)	-665	NM_003679	8564	Hs.731056	NM_003679	HPRD:04642	KMO	dJ317G22.1	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding
19-PTNLD28-TUMOR_peak_44421	chr18	7272413	7272551	+	12.39981	NA	Intergenic	Intergenic	41345	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
19-PTNLD28-TUMOR_peak_58176	chr2	211488304	211488484	+	12.39981	NA	intron (NM_001875, intron 21 of 37)	intron (NM_001875, intron 21 of 37)	6099	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_13667	chr10	54539910	54540095	+	12.39981	NA	Intergenic	Intergenic	-8542	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_75838	chr4	78354620	78354767	+	12.39981	NA	Intergenic	Intergenic	-78214	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_97698	chr8	23584027	23584151	+	12.39981	NA	Intergenic	CpG	-19978	NM_001136271	137814	Hs.532654	NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
19-PTNLD28-TUMOR_peak_22251	chr11	131431570	131431743	+	12.39981	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	-20895	NR_110140	101929653	Hs.559159	NR_110140	ENSG00000237654	LOC101929653	-	uncharacterized LOC101929653	ncRNA
19-PTNLD28-TUMOR_peak_19866	chr11	72100239	72100404	+	12.39981	NA	intron (NM_001258393, intron 2 of 14)	intron (NM_001258393, intron 2 of 14)	45403	NM_001258393	81570	Hs.523877	NM_030813	HPRD:11560	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_8230	chr1	172631952	172632162	+	12.39981	NA	intron (NM_000639, intron 2 of 3)	intron (NM_000639, intron 2 of 3)	3872	NM_000639	356	Hs.2007	NM_000639	HPRD:00610	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6	Fas ligand (TNF superfamily, member 6)	protein-coding
19-PTNLD28-TUMOR_peak_92087	chr7	39052621	39052747	+	12.39981	NA	intron (NM_001166018, intron 2 of 10)	L1PA2|LINE|L1	35075	NM_001166018	11281	Hs.137106	NM_007252	HPRD:10162	POU6F2	RPF-1|WT5|WTSL	POU class 6 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_80060	chr5	57445669	57445846	+	12.39981	NA	Intergenic	Intergenic	-27589	NR_104669	101928569	Hs.319708	NR_104669	ENSG00000248132	LOC101928569	-	uncharacterized LOC101928569	ncRNA
19-PTNLD28-TUMOR_peak_54635	chr2	104490614	104490899	+	12.39981	NA	Intergenic	Intergenic	534034	NR_037885	100287010	Hs.694603	NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
19-PTNLD28-TUMOR_peak_89360	chr6	125635360	125635529	+	12.39981	NA	Intergenic	Intergenic	-12162	NM_016063	51020	Hs.32826	NM_016063	HPRD:12897	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_17878	chr11	33050933	33051092	+	12.39981	NA	intron (NM_001077242, intron 4 of 8)	AluSz|SINE|Alu	-9951	NM_018393	55346	Hs.655341	NM_018393	HPRD:07750	TCP11L1	dJ85M6.3	t-complex 11, testis-specific-like 1	protein-coding
19-PTNLD28-TUMOR_peak_37674	chr16	48472397	48472634	+	12.39981	NA	Intergenic	LTR16A1|LTR|ERVL	-53286	NM_003031	6477	Hs.706828	NM_003031	HPRD:03736	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_104041	chr9	81582533	81582718	+	12.39981	NA	Intergenic	Intergenic	177956	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
19-PTNLD28-TUMOR_peak_88941	chr6	106044259	106044575	+	12.39981	NA	Intergenic	Intergenic	-193418	NM_002726	5550	Hs.436564	NM_002726	HPRD:02673	PREP	PE|PEP	prolyl endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_82899	chr5	142949860	142950026	+	12.39981	NA	Intergenic	Intergenic	-109482	NR_049829	100846991		NR_049829	miRBase:MI0018176	MIR5197	-	microRNA 5197	ncRNA
19-PTNLD28-TUMOR_peak_81223	chr5	95219780	95219911	+	12.39981	NA	TTS (NM_012081)	TTS (NM_012081)	31909	NR_026936	202299	Hs.8373	NM_175616	HPRD:16896	C5orf27	FIS	chromosome 5 open reading frame 27	ncRNA
19-PTNLD28-TUMOR_peak_63497	chr21	39543851	39544216	+	12.39981	NA	Intergenic	Intergenic	-34217	NR_027695	259234	Hs.147695	NM_148676	HPRD:10922	DSCR10	-	Down syndrome critical region gene 10 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_91644	chr7	24099535	24099780	+	12.39981	NA	Intergenic	L1PA10|LINE|L1	-224150	NM_000905	4852	Hs.1832	NM_000905	HPRD:01214	NPY	PYY4	neuropeptide Y	protein-coding
19-PTNLD28-TUMOR_peak_65605	chr22	40119985	40120144	+	12.39981	NA	Intergenic	Intergenic	153306	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_103961	chr9	79134103	79134230	+	12.39981	NA	Intergenic	Intergenic	18617	NM_001097636	2650	Hs.521568	NM_001490	HPRD:02669	GCNT1	C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding
19-PTNLD28-TUMOR_peak_90631	chr6	169692832	169692982	+	12.39981	NA	Intergenic	Intergenic	-38698	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_35452	chr15	99973632	99973834	+	12.39939	NA	Intergenic	Intergenic	-132400	NM_005587	4205	Hs.268675	NM_005587	HPRD:02807	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
19-PTNLD28-TUMOR_peak_95310	chr7	130597029	130597150	+	12.39783	NA	intron (NR_110472, intron 1 of 3)	intron (NR_110472, intron 1 of 3)	980	NR_110472	378805	Hs.150556	NM_001085379	ENSG00000226380	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
19-PTNLD28-TUMOR_peak_14752	chr10	88730902	88731645	+	12.39636	NA	TTS (NM_006829)	TTS (NM_006829)	775	NM_133447	119385	Hs.511787	NM_133447		AGAP11	-	ankyrin repeat and GTPase domain Arf GTPase activating protein 11	protein-coding
19-PTNLD28-TUMOR_peak_87948	chr6	52416819	52417096	+	12.39138	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	24905	NM_012288	9697	Hs.520182	NM_012288	HPRD:16338	TRAM2	-	translocation associated membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_72887	chr3	185645725	185645865	+	12.39138	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	10129	NM_001243879	6434	Hs.533122	NM_004593		TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_95929	chr7	142011791	142011956	+	12.39024	NA	Intergenic	AluJb|SINE|Alu	-39805	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86280	chr6	27870241	27870386	+	12.39024	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	9110	NM_003527	8348	Hs.484991	NM_003527	HPRD:11904	HIST1H2BO	H2B.2|H2B/n|H2BFN|dJ193B12.2	histone cluster 1, H2bo	protein-coding
19-PTNLD28-TUMOR_peak_43713	chr17	76164536	76164705	+	12.38915	NA	promoter-TSS (NM_004710)	promoter-TSS (NM_004710)	-51	NM_004710	9144	Hs.464210	NM_004710	HPRD:04891	SYNGR2	-	synaptogyrin 2	protein-coding
19-PTNLD28-TUMOR_peak_182	chr1	1714436	1714639	+	12.38915	NA	Intergenic	Intergenic	-3029	NM_001198994	65220	Hs.654792	NM_023018	HPRD:16907	NADK	dJ283E3.1	NAD kinase	protein-coding
19-PTNLD28-TUMOR_peak_104074	chr9	83107216	83107449	+	12.38871	NA	Intergenic	Intergenic	517394	NR_121212	101927477	Hs.571630	NR_121212		LINC01507	-	long intergenic non-protein coding RNA 1507	ncRNA
19-PTNLD28-TUMOR_peak_75841	chr4	78515298	78515420	+	12.38871	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	82452	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_40170	chr17	9739452	9739722	+	12.38871	NA	intron (NM_004246, intron 2 of 12)	intron (NM_004246, intron 2 of 12)	10206	NM_004246	9340	Hs.248202	NM_004246		GLP2R	-	glucagon-like peptide 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_109909	chrX	153111385	153111554	+	12.38871	NA	Intergenic	MER67C|LTR|ERV1	-15466	NM_032512	57595	Hs.92732	NM_032512	HPRD:06601	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_21013	chr11	108131486	108131597	+	12.38871	NA	intron (NM_000051, intron 16 of 62)	L1PA2|LINE|L1	37982	NM_000051	472	Hs.367437	NM_000051	HPRD:06347	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_60606	chr20	32431880	32432032	+	12.38871	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	32846	NM_176812	128866	Hs.472471	NM_176812	HPRD:16642	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
19-PTNLD28-TUMOR_peak_62412	chr20	58071066	58071211	+	12.38871	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-81426	NM_001199505	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_8095	chr1	169429427	169430018	+	12.38871	NA	5' UTR (NM_001300968, exon 1 of 7)	5' UTR (NM_001300968, exon 1 of 7)	185	NM_001300968	57821	Hs.567557	NM_021179	HPRD:14258	CCDC181	C1orf114	coiled-coil domain containing 181	protein-coding
19-PTNLD28-TUMOR_peak_82630	chr5	139752581	139752792	+	12.38871	NA	intron (NM_031467, intron 21 of 21)	intron (NM_031467, intron 21 of 21)	12899	NM_001258428	83697	Hs.550313	NM_031467	HPRD:15393	SLC4A9	AE4	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding
19-PTNLD28-TUMOR_peak_49048	chr19	40596299	40596955	+	12.38871	NA	intron (NM_001142577, intron 1 of 5)	CpG	183	NM_001010880	284323	Hs.115140	NM_001010880	HPRD:17336	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
19-PTNLD28-TUMOR_peak_82759	chr5	141114489	141114647	+	12.38871	NA	Intergenic	Intergenic	-52768	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_26524	chr12	117650539	117650712	+	12.38871	NA	3' UTR (NM_001204218, exon 30 of 30)	3' UTR (NM_001204218, exon 30 of 30)	-22325	NM_015002	23014	Hs.740376	NM_015002	HPRD:09948	FBXO21	FBX21	F-box protein 21	protein-coding
19-PTNLD28-TUMOR_peak_90579	chr6	168503353	168503532	+	12.38871	NA	Intergenic	Intergenic	-21205	NR_110312	79981	Hs.266746	NM_024919	HPRD:10997	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_55979	chr2	137667404	137667780	+	12.38871	NA	Intergenic	Intergenic	-80870	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_41572	chr17	40950507	40950842	+	12.38871	NA	promoter-TSS (NM_001040431)	promoter-TSS (NM_001040431)	69	NM_001040431	28958	Hs.16059	NM_001040431	ENSG00000183978	COA3	CCDC56|MITRAC12	cytochrome c oxidase assembly factor 3	protein-coding
19-PTNLD28-TUMOR_peak_67781	chr3	43911704	43911865	+	12.38871	NA	Intergenic	Intergenic	179409	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_17144	chr11	11239948	11240072	+	12.38871	NA	Intergenic	Intergenic	134894	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_62557	chr20	61701289	61701423	+	12.38871	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	-31288	NR_003244	768096	Hs.549606	NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_10502	chr1	226612332	226612476	+	12.38871	NA	Intergenic	Intergenic	-16603	NM_001618	142	Hs.177766	NM_001618	HPRD:01435	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1	poly (ADP-ribose) polymerase 1	protein-coding
19-PTNLD28-TUMOR_peak_14536	chr10	80734427	80734558	+	12.38565	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	92713	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39963	chr17	7212170	7212314	+	12.38565	NA	intron (NM_001143762, intron 1 of 5)	intron (NM_001143762, intron 1 of 5)	548	NM_001143762	1984	Hs.534314	NM_001970	HPRD:02555	EIF5A	EIF-5A|EIF5A1|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
19-PTNLD28-TUMOR_peak_101475	chr8	142352484	142352628	+	12.38080	NA	non-coding (NR_024441, exon 2 of 4)	non-coding (NR_024441, exon 2 of 4)	1908	NR_024441	731779	Hs.586414	NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
19-PTNLD28-TUMOR_peak_103035	chr9	38046773	38046930	+	12.38080	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	22359	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_71538	chr3	147111031	147111353	+	12.37949	NA	promoter-TSS (NR_033119)	promoter-TSS (NR_033119)	-975	NR_040762	84107	Hs.415766	NM_032153	HPRD:12340	ZIC4	-	Zic family member 4	protein-coding
19-PTNLD28-TUMOR_peak_13898	chr10	65027257	65027385	+	12.37949	NA	intron (NM_032776, intron 2 of 25)	intron (NM_032776, intron 2 of 25)	1662	NM_001282948	221037	Hs.413416	NM_004241	HPRD:05141	JMJD1C	TRIP8	jumonji domain containing 1C	protein-coding
19-PTNLD28-TUMOR_peak_98120	chr8	33329317	33329655	+	12.37858	NA	intron (NM_032664, intron 1 of 4)	intron (NM_032664, intron 1 of 4)	1178	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_103015	chr9	37943040	37943235	+	12.37194	NA	intron (NM_003028, intron 5 of 5)	intron (NM_003028, intron 5 of 5)	-38787	NR_024873	92014	Hs.634120	NM_033412	HPRD:14370	SLC25A51	CG7943|MCART1	solute carrier family 25, member 51	protein-coding
19-PTNLD28-TUMOR_peak_4236	chr1	68236841	68237194	+	12.37099	NA	intron (NM_018841, intron 2 of 3)	MIRb|SINE|MIR	-60954	NR_040077	100289178	Hs.677603	NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36025	chr16	4630339	4630735	+	12.37099	NA	intron (NM_001145011, intron 7 of 15)	AT_rich|Low_complexity|Low_complexity	24046	NM_001145011	342346	Hs.684212	NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_20160	chr11	76392013	76392169	+	12.37099	NA	intron (NR_024042, intron 20 of 20)	intron (NR_024042, intron 20 of 20)	-10300	NM_001128922	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_68260	chr3	50844732	50845004	+	12.37099	NA	intron (NM_004947, intron 2 of 52)	MSTB1|LTR|ERVL-MaLR	132196	NM_004947	1795	Hs.476284	NM_004947	HPRD:10341	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
19-PTNLD28-TUMOR_peak_80895	chr5	78907921	78908106	+	12.37099	NA	promoter-TSS (NM_001114394)	promoter-TSS (NM_001114394)	-230	NM_001114394	167153	Hs.418198	NM_173797	HPRD:15098	PAPD4	GLD2|TUT2	PAP associated domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_11467	chr1	245851316	245851599	+	12.37099	NA	exon (NM_018012, exon 12 of 15)	exon (NM_018012, exon 12 of 15)	533170	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_17044	chr11	9549038	9549214	+	12.37099	NA	exon (NM_003442, exon 16 of 16)	exon (NM_003442, exon 16 of 16)	-46102	NM_003390	7465	Hs.249441	NM_003390	HPRD:01907	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
19-PTNLD28-TUMOR_peak_92687	chr7	56101575	56101975	+	12.37099	NA	5' UTR (NM_004577, exon 2 of 8)	5' UTR (NM_004577, exon 2 of 8)	17493	NM_004577	5723	Hs.512656	NM_004577	HPRD:01406	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_63875	chr21	45118562	45118683	+	12.37099	NA	Intergenic	LTR14|LTR|ERVK	-20356	NM_003681	8566	Hs.284491	NM_003681	HPRD:01526	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
19-PTNLD28-TUMOR_peak_22174	chr11	130304478	130305063	+	12.37099	NA	Intergenic	Intergenic	-6231	NM_007037	11095	Hs.271605	NM_007037	HPRD:05531	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif, 8	protein-coding
19-PTNLD28-TUMOR_peak_24362	chr12	52829047	52829185	+	12.36775	NA	Intergenic	Intergenic	-1006	NM_004693	9119	Hs.697046	NM_004693	HPRD:11057	KRT75	K6HF|KB18|PFB	keratin 75	protein-coding
19-PTNLD28-TUMOR_peak_34460	chr15	74343825	74343989	+	12.36775	NA	Intergenic	Intergenic	30984	NM_001038640	342096	Hs.546408	NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_40436	chr17	17861515	17861679	+	12.36775	NA	intron (NM_001033551, intron 1 of 13)	MIR3|SINE|MIR	14187	NM_001082968	146691	Hs.462379	NM_144678	HPRD:18213	TOM1L2	-	target of myb1-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_80575	chr5	71674844	71675043	+	12.36775	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	58749	NM_001284404	79810	Hs.126906	NM_024754	HPRD:15193	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
19-PTNLD28-TUMOR_peak_39972	chr17	7283719	7283892	+	12.36775	NA	promoter-TSS (NM_001251902)	promoter-TSS (NM_001251902)	-488	NM_001251902	8711	Hs.203420	NM_003985	HPRD:09730	TNK1	-	tyrosine kinase, non-receptor, 1	protein-coding
19-PTNLD28-TUMOR_peak_101234	chr8	135870999	135871125	+	12.36775	NA	intron (NR_125427, intron 1 of 2)	intron (NR_125427, intron 1 of 2)	8884	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
19-PTNLD28-TUMOR_peak_88078	chr6	54711156	54711593	+	12.36775	NA	promoter-TSS (NM_001010872)	promoter-TSS (NM_001010872)	-195	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_42050	chr17	46560534	46560682	+	12.36703	NA	Intergenic	Intergenic	38413	NR_110804	101927166	Hs.149244	NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
19-PTNLD28-TUMOR_peak_9967	chr1	212379249	212379475	+	12.36228	NA	Intergenic	Intergenic	-79517	NM_006243	5525	Hs.744012	NM_006243	HPRD:03384	PPP2R5A	B56A|PR61A	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
19-PTNLD28-TUMOR_peak_61441	chr20	45141897	45142331	+	12.36228	NA	promoter-TSS (NM_001270497)	promoter-TSS (NM_001270497)	84	NR_073026	55713	Hs.147041	NM_018102	HPRD:15777	ZNF334	-	zinc finger protein 334	protein-coding
19-PTNLD28-TUMOR_peak_108419	chrX	54796628	54796793	+	12.36228	NA	intron (NM_198510, intron 6 of 12)	L1PA2|LINE|L1	27963	NM_198510	347365	Hs.454272	NM_198510	HPRD:17164	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	inter-alpha-trypsin inhibitor heavy chain family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_55003	chr2	113033501	113033794	+	12.36228	NA	intron (NM_198581, intron 1 of 11)	intron (NM_198581, intron 1 of 11)	469	NM_198581	376940	Hs.190477	NM_198581	HPRD:15698	ZC3H6	ZC3HDC6	zinc finger CCCH-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_62325	chr20	56516706	56516914	+	12.36228	NA	Intergenic	Intergenic	46360	NR_039757	100616353		NR_039757	miRBase:MI0016899	MIR4532	-	microRNA 4532	ncRNA
19-PTNLD28-TUMOR_peak_102869	chr9	35696624	35696803	+	12.36228	NA	TTS (NM_006289)	TTS (NM_006289)	-6660	NM_003289	7169	Hs.300772	NM_003289	HPRD:11768	TPM2	AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB	tropomyosin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_42771	chr17	60562422	60562571	+	12.36228	NA	intron (NM_006852, intron 2 of 21)	intron (NM_006852, intron 2 of 21)	4022	NM_001284363	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_54919	chr2	111829921	111830200	+	12.36228	NA	intron (NM_001142807, intron 16 of 17)	L1ME1|LINE|L1	43105	NR_122074	400997	Hs.652337	NR_122074	HPRD:16971	LOC400997	-	uncharacterized LOC400997	ncRNA
19-PTNLD28-TUMOR_peak_85303	chr6	10881918	10882056	+	12.36228	NA	exon (NM_004752, exon 1 of 5)	exon (NM_004752, exon 1 of 5)	111	NM_004752	9247	Hs.227098	NM_004752	HPRD:04758	GCM2	GCMB|hGCMb	glial cells missing homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104643	chr9	95964111	95964297	+	12.36228	NA	intron (NM_006648, intron 1 of 28)	intron (NM_006648, intron 1 of 28)	16992	NM_001282394	65268	Hs.654856	NM_006648	HPRD:06951	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_28863	chr13	101350381	101350630	+	12.36228	NA	Intergenic	L1PA2|LINE|L1	-10074	NR_047687	100885778	Hs.602949	NR_047687	ENSG00000233009	NALCN-AS1	-	NALCN antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55535	chr2	127842857	127843065	+	12.36143	NA	intron (NM_139343, intron 1 of 18)	intron (NM_139343, intron 1 of 18)	21942	NM_139343	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_72570	chr3	178866326	178866879	+	12.36143	NA	promoter-TSS (NR_125401)	promoter-TSS (NR_125401)	291	NM_006218	5290	Hs.553498	NM_006218		PIK3CA	CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha	protein-coding
19-PTNLD28-TUMOR_peak_85382	chr6	11811034	11811281	+	12.36143	NA	Intergenic	Intergenic	-31877	NM_032744	84830	Hs.126409	NM_032744	HPRD:12836	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
19-PTNLD28-TUMOR_peak_4743	chr1	89457691	89457807	+	12.35913	NA	intron (NM_001162536, intron 1 of 2)	AluY|SINE|Alu	894	NM_019610	494115	Hs.481898	NM_019610	HPRD:17417	RBMXL1	RBM1	RNA binding motif protein, X-linked-like 1	protein-coding
19-PTNLD28-TUMOR_peak_52437	chr2	43686708	43686860	+	12.35861	NA	intron (NM_022065, intron 26 of 37)	L2a|LINE|L2	136329	NM_001083953	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_478	chr1	8012159	8012306	+	12.35861	NA	Intergenic	SVA_D|Other|Other	-9007	NM_001561	3604	Hs.86447	NM_001561		TNFRSF9	4-1BB|CD137|CDw137|ILA	tumor necrosis factor receptor superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_86582	chr6	31153759	31154092	+	12.35861	NA	Intergenic	Harlequin-int|LTR|ERV1	-8249	NR_026816	100130889	Hs.670091	NM_001134284	ENSG00000204528	PSORS1C3	NCRNA00196	psoriasis susceptibility 1 candidate 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_52577	chr2	46687435	46687864	+	12.35861	NA	Intergenic	Intergenic	-19055	NM_001145051	388946	Hs.733348	NM_001145051	ENSG00000187600	TMEM247	-	transmembrane protein 247	protein-coding
19-PTNLD28-TUMOR_peak_95709	chr7	138482732	138483050	+	12.35861	NA	promoter-TSS (NM_020632)	promoter-TSS (NM_020632)	50	NM_020632	50617	Hs.98967	NM_020632	HPRD:05576	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase, H+ transporting, lysosomal V0 subunit a4	protein-coding
19-PTNLD28-TUMOR_peak_16020	chr10	123734648	123734866	+	12.35861	NA	promoter-TSS (NM_001167865)	promoter-TSS (NM_001167865)	-14	NM_001167865	54780	Hs.258798	NM_017615	HPRD:16585	NSMCE4A	C10orf86|NS4EA|NSE4A	non-SMC element 4 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_32772	chr15	29980140	29980439	+	12.35638	NA	Intergenic	Intergenic	-117362	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_99045	chr8	67419590	67420144	+	12.35638	NA	intron (NM_152765, intron 3 of 5)	intron (NM_152765, intron 3 of 5)	14376	NM_152765	254778	Hs.268869	NM_152765	HPRD:14565	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_32163	chr14	103394637	103394911	+	12.35638	NA	exon (NM_030943, exon 4 of 12)	exon (NM_030943, exon 4 of 12)	5781	NM_030943	81693	Hs.534494	NM_030943	HPRD:09314	AMN	PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_102481	chr9	21998145	21998284	+	12.35632	NA	intron (NR_120536, intron 1 of 3)	intron (NR_120536, intron 1 of 3)	3424	NR_047536	100048912	Hs.493614	NR_003529	ENSG00000240498	CDKN2B-AS1	ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS	CDKN2B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31323	chr14	75718979	75719203	+	12.35625	NA	Intergenic	Intergenic	-26390	NM_005252	2353	Hs.25647	NM_005252	HPRD:01275	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_106033	chr9	127023651	127023803	+	12.35625	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	3197	NM_001166168	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_58451	chr2	219760955	219761196	+	12.35615	NA	Intergenic	Intergenic	15820	NM_025216	80326	Hs.121540	NM_025216	HPRD:16207	WNT10A	OODD|SSPS|STHAG4	wingless-type MMTV integration site family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_10495	chr1	226496506	226497046	+	12.35497	NA	intron (NM_001270410, intron 1 of 14)	CpG	428	NM_001270409	286826	Hs.120817	NM_173083	HPRD:13990	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
19-PTNLD28-TUMOR_peak_66086	chr22	50466680	50466888	+	12.35497	NA	Intergenic	LTR87|LTR|ERVL?	-15729	NM_001001694	400935	Hs.526712	NM_001001694	HPRD:13456	IL17REL	-	interleukin 17 receptor E-like	protein-coding
19-PTNLD28-TUMOR_peak_35661	chr16	809662	809798	+	12.35459	NA	Intergenic	Intergenic	-1035	NM_005823	10232	Hs.408488	NM_005823	HPRD:03030	MSLN	MPF|SMRP	mesothelin	protein-coding
19-PTNLD28-TUMOR_peak_23132	chr12	12990135	12990275	+	12.35276	NA	Intergenic	Intergenic	23925	NM_201224	51202	Hs.719938	NM_016355	HPRD:10863	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding
19-PTNLD28-TUMOR_peak_49507	chr19	47117480	47117649	+	12.35276	NA	Intergenic	Intergenic	10790	NM_000960	5739	Hs.458324	NM_000960	HPRD:08959	PTGIR	IP|PRIPR	prostaglandin I2 (prostacyclin) receptor (IP)	protein-coding
19-PTNLD28-TUMOR_peak_49912	chr19	50601202	50601367	+	12.34731	NA	promoter-TSS (NR_024214)	promoter-TSS (NR_024214)	-81	NR_024242	100191063	Hs.723094	NR_024242		SNAR-A14	-	small ILF3/NF90-associated RNA A14	snRNA
19-PTNLD28-TUMOR_peak_33191	chr15	40861401	40861573	+	12.33611	NA	promoter-TSS (NM_152260)	promoter-TSS (NM_152260)	-5	NM_152260	27079	Hs.173311	NM_152260	HPRD:12668	RPUSD2	C15orf19|C18B11	RNA pseudouridylate synthase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_71338	chr3	141087501	141087648	+	12.33360	NA	5' UTR (NM_001080412, exon 2 of 8)	5' UTR (NM_001080412, exon 2 of 8)	44519	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
19-PTNLD28-TUMOR_peak_68405	chr3	53528017	53528431	+	12.33000	NA	promoter-TSS (NM_001128839)	promoter-TSS (NM_001128839)	-852	NM_001128840	776	Hs.476358	NM_000720	HPRD:00247	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding
19-PTNLD28-TUMOR_peak_31439	chr14	77670853	77671034	+	12.33000	NA	intron (NM_020431, intron 1 of 23)	L2b|LINE|L2	22841	NM_020431	57156	Hs.22452	NM_020431	HPRD:16617	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
19-PTNLD28-TUMOR_peak_43286	chr17	72119459	72119782	+	12.33000	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-80175	NM_000999	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_72657	chr3	182400113	182400236	+	12.33000	NA	Intergenic	CpG	-111117	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_48582	chr19	34559018	34559181	+	12.33000	NA	Intergenic	Intergenic	-104253	NM_015578	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_91260	chr7	8343544	8343709	+	12.33000	NA	intron (NR_125740, intron 3 of 5)	L1PA3|LINE|L1	-41384	NM_004968	3382	Hs.487561	NM_004968	HPRD:00971	ICA1	ICA69|ICAp69	islet cell autoantigen 1, 69kDa	protein-coding
19-PTNLD28-TUMOR_peak_104070	chr9	82993675	82993812	+	12.33000	NA	Intergenic	Intergenic	403805	NR_121212	101927477	Hs.571630	NR_121212		LINC01507	-	long intergenic non-protein coding RNA 1507	ncRNA
19-PTNLD28-TUMOR_peak_75609	chr4	71600432	71600627	+	12.33000	NA	intron (NM_001291993, intron 1 of 18)	intron (NM_001291993, intron 1 of 18)	466	NM_001291993	22902	Hs.740904	NM_014961	HPRD:15251	RUFY3	RIPX|SINGAR1	RUN and FYVE domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_25846	chr12	102750549	102750884	+	12.33000	NA	Intergenic	Intergenic	121713	NM_001111284	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_90991	chr7	3533261	3533438	+	12.33000	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	192269	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_92127	chr7	40766292	40766461	+	12.33000	NA	intron (NM_024728, intron 13 of 14)	intron (NM_024728, intron 13 of 14)	253161	NR_110831	101928744	Hs.639767	NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
19-PTNLD28-TUMOR_peak_107398	chrX	3181048	3181189	+	12.33000	NA	Intergenic	MER82|DNA|TcMar-Tigger	-8743	NR_038428	100129464	Hs.187816	NR_038428	ENSG00000228459	CXorf28	-	chromosome X open reading frame 28	ncRNA
19-PTNLD28-TUMOR_peak_78970	chr5	13350832	13351170	+	12.33000	NA	Intergenic	L4|LINE|RTE	593588	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_48742	chr19	36454570	36454726	+	12.33000	NA	Intergenic	Intergenic	26626	NM_024509	79414	Hs.143792	NM_024509	HPRD:14309	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_53621	chr2	75755376	75755599	+	12.33000	NA	intron (NR_110281, intron 1 of 2)	L1PB1|LINE|L1	4293	NR_110281	101927884	Hs.671110	NR_110281	ENSG00000231172	LOC101927884	-	uncharacterized LOC101927884	ncRNA
19-PTNLD28-TUMOR_peak_29089	chr13	111423683	111423880	+	12.33000	NA	Intergenic	Intergenic	55997	NM_001267728	3621	Hs.46700	NM_005537	HPRD:03337	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_79652	chr5	40841307	40841513	+	12.33000	NA	promoter-TSS (NM_032587)	promoter-TSS (NM_032587)	0	NM_032587	84674	Hs.200242	NM_032587	HPRD:09871	CARD6	CINCIN1	caspase recruitment domain family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_107444	chrX	6626828	6626992	+	12.33000	NA	Intergenic	Intergenic	-173751	NM_016379	51481	Hs.170076	NM_016379	HPRD:18280	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
19-PTNLD28-TUMOR_peak_51708	chr2	27205389	27205494	+	12.33000	NA	intron (NM_012326, intron 1 of 6)	intron (NM_012326, intron 1 of 6)	11916	NM_012326	22924	Hs.515860	NM_012326	HPRD:16156	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_5832	chr1	117179196	117179329	+	12.33000	NA	intron (NM_001007237, intron 2 of 10)	MIR3|SINE|MIR	30316	NM_001542	3321	Hs.171057	NM_001542	HPRD:04602	IGSF3	EWI-3|V8	immunoglobulin superfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_53174	chr2	66141484	66141695	+	12.33000	NA	Intergenic	Intergenic	443871	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_64796	chr22	25123146	25123340	+	12.33000	NA	intron (NM_001008496, intron 16 of 20)	intron (NM_001008496, intron 16 of 20)	-37225	NR_001283	7152	Hs.381281	NR_001283		TOP1P2	-	topoisomerase (DNA) I pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_22463	chr12	2144054	2144397	+	12.33000	NA	Intergenic	Intergenic	-13293	NR_046768	100874369	Hs.208723	NR_046768		CACNA1C-IT2	-	CACNA1C intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_30648	chr14	61736383	61736611	+	12.33000	NA	Intergenic	Intergenic	12033	NM_001017970	161291	Hs.146180	NM_001017970	HPRD:18567	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
19-PTNLD28-TUMOR_peak_28677	chr13	93495861	93496257	+	12.33000	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	-122192	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_59887	chr20	14216059	14216234	+	12.33000	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	102167	NM_198391	23767	Hs.41296	NM_013281	HPRD:05313	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_104013	chr9	80559838	80560047	+	12.33000	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	86423	NM_002072	2776	Hs.269782	NM_002072		GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	guanine nucleotide binding protein (G protein), q polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_68506	chr3	56716386	56716663	+	12.32788	NA	intron (NM_001112736, intron 1 of 23)	CpG	611	NM_001112736	23272	Hs.116877	NM_015224	HPRD:10183	FAM208A	C3orf63|RAP140|se89-1	family with sequence similarity 208, member A	protein-coding
19-PTNLD28-TUMOR_peak_96833	chr8	181872	182083	+	12.32788	NA	promoter-TSS (NM_001287399)	promoter-TSS (NM_001287399)	-160	NM_001287255	169270	Hs.591388	NM_173539	HPRD:11731	ZNF596	-	zinc finger protein 596	protein-coding
19-PTNLD28-TUMOR_peak_31712	chr14	92219911	92220105	+	12.32788	NA	Intergenic	Intergenic	-21595	NM_024764	79820	Hs.131755	NM_024764	HPRD:16613	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_1927	chr1	30042953	30043206	+	12.32780	NA	Intergenic	Intergenic	-366453	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LOC101928460	-	uncharacterized LOC101928460	ncRNA
19-PTNLD28-TUMOR_peak_15852	chr10	118946393	118946886	+	12.32780	NA	Intergenic	L2c|LINE|L2	-10361	NM_181840	338567	Hs.449650	NM_181840	HPRD:17173	KCNK18	K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK	potassium channel, subfamily K, member 18	protein-coding
19-PTNLD28-TUMOR_peak_59947	chr20	16642424	16642628	+	12.32780	NA	Intergenic	Intergenic	-68083	NM_003092	6629	Hs.280378	NM_003092	HPRD:04628	SNRPB2	Msl1	small nuclear ribonucleoprotein polypeptide B	protein-coding
19-PTNLD28-TUMOR_peak_36277	chr16	11187954	11188179	+	12.32780	NA	intron (NM_015226, intron 18 of 22)	intron (NM_015226, intron 18 of 22)	149721	NM_001243403	23274	Hs.35490	NM_015226	HPRD:17185	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16, member A	protein-coding
19-PTNLD28-TUMOR_peak_1160	chr1	17674979	17675167	+	12.32780	NA	intron (NM_012387, intron 10 of 15)	intron (NM_012387, intron 10 of 15)	-23618	NM_207421	353238	Hs.531598	NM_207421		PADI6	hPADVI	peptidyl arginine deiminase, type VI	protein-coding
19-PTNLD28-TUMOR_peak_86463	chr6	30409094	30409209	+	12.32780	NA	Intergenic	Intergenic	-48032	NM_005516	3133	Hs.650174	NM_005516	HPRD:00877	HLA-E	EA1.2|EA2.1|HLA-6.2|MHC|QA1	major histocompatibility complex, class I, E	protein-coding
19-PTNLD28-TUMOR_peak_98229	chr8	37939402	37939754	+	12.32780	NA	Intergenic	HERV1_LTRa|LTR|ERV1	-23433	NM_004674	9070	Hs.521530	NM_004674	HPRD:05309	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_106664	chr9	137594912	137595176	+	12.32780	NA	intron (NM_001278074, intron 4 of 65)	intron (NM_001278074, intron 4 of 65)	61393	NM_000093	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_80543	chr5	71053720	71053998	+	12.32780	NA	Intergenic	Intergenic	38869	NM_004291	9607	Hs.1707	NM_004291	HPRD:04006	CARTPT	CART	CART prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_14431	chr10	77846406	77846983	+	12.32780	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	304175	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_73366	chr3	194110160	194110352	+	12.32780	NA	Intergenic	Intergenic	9739	NM_004488	2814	Hs.73734	NM_004488	HPRD:01431	GP5	CD42d|GPV	glycoprotein V (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_12009	chr10	11778872	11779015	+	12.32780	NA	Intergenic	L1PA2|LINE|L1	-5413	NM_024693	79746	Hs.22242	NM_024693	HPRD:10930	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_69140	chr3	75558795	75558929	+	12.32780	NA	Intergenic	L2b|LINE|L2	-74596	NR_024241	692099	Hs.591652	NR_024241	ENSG00000244026	FAM86DP	FAM86D	family with sequence similarity 86, member D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_36782	chr16	22243885	22244291	+	12.32780	NA	intron (NM_013302, intron 2 of 17)	intron (NM_013302, intron 2 of 17)	26496	NM_013302	29904	Hs.498892	NM_013302		EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding
19-PTNLD28-TUMOR_peak_68611	chr3	58518612	58518787	+	12.32780	NA	intron (NM_003500, intron 5 of 14)	intron (NM_003500, intron 5 of 14)	4230	NM_003500	8309	Hs.444959	NM_003500	HPRD:09037	ACOX2	BCOX|BRCACOX|BRCOX|THCCox	acyl-CoA oxidase 2, branched chain	protein-coding
19-PTNLD28-TUMOR_peak_83458	chr5	156570185	156570309	+	12.32685	NA	promoter-TSS (NM_004270)	promoter-TSS (NM_004270)	-326	NM_004270	9443	Hs.279902	NM_004270	HPRD:05439	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_20208	chr11	77301385	77301624	+	12.32448	NA	exon (NM_173039, exon 1 of 3)	exon (NM_173039, exon 1 of 3)	824	NM_173039	282679	Hs.503345	NM_173039	HPRD:16503	AQP11	AQPX1	aquaporin 11	protein-coding
19-PTNLD28-TUMOR_peak_10604	chr1	228273448	228273593	+	12.32348	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	2669	NM_001024228	375	Hs.286221	NM_001658	HPRD:00054	ARF1	-	ADP-ribosylation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_94510	chr7	102118656	102118920	+	12.32348	NA	intron (NM_006234, intron 1 of 3)	MIR|SINE|MIR	593	NM_006234	5439	Hs.654952	NM_006234	HPRD:16038	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa	protein-coding
19-PTNLD28-TUMOR_peak_13512	chr10	49816328	49816447	+	12.32303	NA	intron (NR_045675, intron 2 of 10)	MER91A|DNA|hAT-Tip100	-3211	NM_021226	58504	Hs.655672	NM_021226	HPRD:12476	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
19-PTNLD28-TUMOR_peak_3331	chr1	48058779	48059143	+	12.32303	NA	Intergenic	CpG	157272	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_39279	chr16	87586611	87586743	+	12.32303	NA	Intergenic	Intergenic	-48764	NR_073379	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_32870	chr15	31589081	31589212	+	12.32303	NA	Intergenic	Intergenic	-29937	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_39511	chr16	89927288	89927470	+	12.32303	NA	intron (NM_032451, intron 10 of 14)	intron (NM_032451, intron 10 of 14)	-12615	NM_014972	22980	Hs.415342	NM_014972	HPRD:13830	TCF25	Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding
19-PTNLD28-TUMOR_peak_40123	chr17	8702410	8702561	+	12.32303	NA	5' UTR (NM_152599, exon 1 of 1)	5' UTR (NM_152599, exon 1 of 1)	182	NM_152599	162387	Hs.213603	NM_152599	HPRD:08186	MFSD6L	-	major facilitator superfamily domain containing 6-like	protein-coding
19-PTNLD28-TUMOR_peak_103064	chr9	38498622	38498882	+	12.32303	NA	Intergenic	Intergenic	46617	NR_047651	100289137	Hs.732599	NR_047651		FAM95C	-	family with sequence similarity 95, member C	ncRNA
19-PTNLD28-TUMOR_peak_72648	chr3	182082627	182083183	+	12.32303	NA	Intergenic	Intergenic	121245	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	FLJ46066	-	uncharacterized LOC401103	ncRNA
19-PTNLD28-TUMOR_peak_6043	chr1	120871772	120871922	+	12.32303	NA	Intergenic	MIR|SINE|MIR	32842	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_10000	chr1	212838716	212839064	+	12.32303	NA	Intergenic	C-rich|Low_complexity|Low_complexity	34437	NM_018664	55509	Hs.62919	NM_018664	HPRD:18081	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper transcription factor, ATF-like 3	protein-coding
19-PTNLD28-TUMOR_peak_40908	chr17	29025000	29025208	+	12.32303	NA	Intergenic	Intergenic	-11522	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_32178	chr14	103576637	103576746	+	12.32286	NA	3' UTR (NM_001077594, exon 11 of 11)	3' UTR (NM_001077594, exon 11 of 11)	10210	NM_001077594	91828	Hs.37712	NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3-like 4	protein-coding
19-PTNLD28-TUMOR_peak_46983	chr19	7683915	7684411	+	12.32286	NA	TTS (NM_020902)	TTS (NM_020902)	1838	NR_106850	102465475		NR_106850		MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
19-PTNLD28-TUMOR_peak_48987	chr19	39688470	39688628	+	12.32286	NA	intron (NM_001001414, intron 1 of 5)	intron (NM_001001414, intron 1 of 5)	945	NM_001001414	342897	Hs.726934	NM_001001414	HPRD:17357	NCCRP1	FBXO50|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding
19-PTNLD28-TUMOR_peak_78207	chr4	183838353	183838827	+	12.31849	NA	promoter-TSS (NM_001921)	promoter-TSS (NM_001921)	40	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_78831	chr5	9519710	9519879	+	12.31849	NA	intron (NM_003966, intron 1 of 22)	intron (NM_003966, intron 1 of 22)	8349	NR_109935	101929338	Hs.675861	NR_109935	ENSG00000251370	CTD-2201E9.1	-	uncharacterized LOC101929338	ncRNA
19-PTNLD28-TUMOR_peak_70760	chr3	129729410	129729622	+	12.31526	NA	Intergenic	LTR12C|LTR|ERV1	36280	NM_007117	7200	Hs.182231	NM_007117	HPRD:08944	TRH	Pro-TRH|TRF	thyrotropin-releasing hormone	protein-coding
19-PTNLD28-TUMOR_peak_4275	chr1	68698123	68698367	+	12.31526	NA	promoter-TSS (NM_024911)	promoter-TSS (NM_024911)	-16	NM_001193334	79971	Hs.647659	NM_024911	HPRD:10980	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
19-PTNLD28-TUMOR_peak_25234	chr12	70382455	70382627	+	12.31526	NA	Intergenic	Intergenic	209809	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_22066	chr11	128756422	128756586	+	12.31526	NA	Intergenic	Intergenic	-4809	NM_000890	3762	Hs.444595	NM_000890		KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding
19-PTNLD28-TUMOR_peak_40370	chr17	17253833	17254096	+	12.31526	NA	Intergenic	Intergenic	47284	NM_020201	56953	Hs.513977	NM_020201	HPRD:12009	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_102183	chr9	12771963	12772165	+	12.31526	NA	intron (NR_125775, intron 2 of 3)	intron (NR_125775, intron 2 of 3)	-2948	NM_203403	286343	Hs.445356	NM_203403		LURAP1L	C9orf150|bA3L8.2	leucine rich adaptor protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_63848	chr21	44763170	44763315	+	12.31526	NA	Intergenic	Intergenic	-11323	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
19-PTNLD28-TUMOR_peak_29194	chr13	114524212	114524359	+	12.31526	NA	intron (NM_001143945, intron 8 of 8)	intron (NM_001143945, intron 8 of 8)	5702	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_85351	chr6	11423429	11423596	+	12.31526	NA	Intergenic	Intergenic	-40931	NR_073131	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_106432	chr9	133005142	133005614	+	12.31526	NA	Intergenic	Intergenic	-22780	NM_001291815	256158	Hs.32194	NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
19-PTNLD28-TUMOR_peak_83527	chr5	157941088	157941347	+	12.31526	NA	Intergenic	Intergenic	-104436	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_61509	chr20	46001676	46001829	+	12.30883	NA	Intergenic	Intergenic	-16119	NM_183048	23613	Hs.446240	NM_012408	HPRD:10166	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger, MYND-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_80547	chr5	71183700	71183809	+	12.30883	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	168764	NM_004291	9607	Hs.1707	NM_004291	HPRD:04006	CARTPT	CART	CART prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_55378	chr2	121417320	121417600	+	12.30883	NA	Intergenic	Intergenic	-137407	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_108934	chrX	95939563	95940066	+	12.30883	NA	5' UTR (NM_006729, exon 1 of 27)	5' UTR (NM_006729, exon 1 of 27)	152	NM_006729	1730	Hs.226483	NM_006729	HPRD:02117	DIAPH2	DIA|DIA2|DRF2|POF|POF2	diaphanous-related formin 2	protein-coding
19-PTNLD28-TUMOR_peak_82691	chr5	140579074	140579419	+	12.30883	NA	promoter-TSS (NM_018931)	promoter-TSS (NM_018931)	-102	NM_018931	56125	Hs.283084	NM_018931	HPRD:06955	PCDHB11	ME2|PCDH-BETA11	protocadherin beta 11	protein-coding
19-PTNLD28-TUMOR_peak_99917	chr8	104196975	104197151	+	12.30883	NA	intron (NM_001024372, intron 1 of 1)	intron (NM_001024372, intron 1 of 1)	-12695	NR_109954	100499183	Hs.654812	NR_034092	ENSG00000247081	BAALC-AS1	-	BAALC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92266	chr7	44217288	44217417	+	12.30883	NA	intron (NM_000162, intron 1 of 9)	LTR16A1|LTR|ERVL	11670	NM_000162	2645	Hs.1270	NM_000162	HPRD:00680	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase (hexokinase 4)	protein-coding
19-PTNLD28-TUMOR_peak_69926	chr3	114369731	114369942	+	12.30883	NA	intron (NR_121662, intron 3 of 6)	intron (NR_121662, intron 3 of 6)	-26044	NM_001164346	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_54569	chr2	102323108	102323240	+	12.30883	NA	intron (NM_145686, intron 2 of 30)	HAL1|LINE|L1	8636	NM_145687	9448	Hs.701013	NM_004834	HPRD:05235	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_55100	chr2	114098028	114098187	+	12.30883	NA	Intergenic	Intergenic	-61609	NM_003466	7849	Hs.469728	NM_003466	HPRD:01335	PAX8	-	paired box 8	protein-coding
19-PTNLD28-TUMOR_peak_24256	chr12	51984605	51984774	+	12.30883	NA	promoter-TSS (NM_001177984)	promoter-TSS (NM_001177984)	-331	NM_001177984	6334	Hs.436550	NM_014191	HPRD:09006	SCN8A	CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium channel, voltage gated, type VIII, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_11086	chr1	235578719	235578875	+	12.30883	NA	intron (NM_001079515, intron 4 of 16)	intron (NM_001079515, intron 4 of 16)	48122	NM_001079515	6905	Hs.744998	NM_003193	HPRD:05381	TBCE	HRD|KCS|KCS1|pac2	tubulin folding cofactor E	protein-coding
19-PTNLD28-TUMOR_peak_42852	chr17	61959689	61959827	+	12.30883	NA	promoter-TSS (NM_022556)	promoter-TSS (NM_022556)	-456	NM_022558	2689	Hs.406754	NM_002059	HPRD:00750	GH2	GH-V|GHL|GHV|hGH-V	growth hormone 2	protein-coding
19-PTNLD28-TUMOR_peak_103496	chr9	67712541	67712711	+	12.30883	NA	Intergenic	Intergenic	-66497	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_109057	chrX	104166874	104167078	+	12.30883	NA	intron (NM_017416, intron 2 of 10)	L1PA15-16|LINE|L1	298401	NM_031274	56157	Hs.567543	NM_031274	HPRD:02257	TEX13A	-	testis expressed 13A	protein-coding
19-PTNLD28-TUMOR_peak_63971	chr21	46000114	46000344	+	12.30883	NA	exon (NM_198694, exon 1 of 1)	exon (NM_198694, exon 1 of 1)	252	NM_198694	386680	Hs.688629	NM_198694		KRTAP10-5	KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5	keratin associated protein 10-5	protein-coding
19-PTNLD28-TUMOR_peak_66653	chr3	12235012	12235293	+	12.30883	NA	Intergenic	Intergenic	-34301	NM_003256	7079	Hs.591665	NM_003256	HPRD:03557	TIMP4	-	TIMP metallopeptidase inhibitor 4	protein-coding
19-PTNLD28-TUMOR_peak_79180	chr5	17797172	17797440	+	12.30883	NA	Intergenic	Intergenic	-409887	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_19269	chr11	65238961	65239106	+	12.30759	NA	Intergenic	Intergenic	-26200	NR_002819	378938	Hs.621695	NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA	metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49472	chr19	46702097	46702261	+	12.30528	NA	Intergenic	Intergenic	-11320	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
19-PTNLD28-TUMOR_peak_53788	chr2	85647885	85648267	+	12.30103	NA	Intergenic	Intergenic	-6879	NM_001256139	822	Hs.516155	NM_001747	HPRD:01088	CAPG	AFCP|HEL-S-66|MCP	capping protein (actin filament), gelsolin-like	protein-coding
19-PTNLD28-TUMOR_peak_10986	chr1	234641547	234641723	+	12.29772	NA	Intergenic	Intergenic	25890	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
19-PTNLD28-TUMOR_peak_880	chr1	13113667	13113772	+	12.29772	NA	intron (NM_001013407, intron 1 of 3)	intron (NM_001013407, intron 1 of 3)	4032	NM_001013407	343068	Hs.567864	NM_001013407	ENSG00000204502	PRAMEF5	PRAMEF23|PRAMEF5L	PRAME family member 5	protein-coding
19-PTNLD28-TUMOR_peak_95871	chr7	140732427	140732684	+	12.29772	NA	Intergenic	L1PA2|LINE|L1	-17774	NM_053035	51650	Hs.416207	NM_016071	HPRD:17598	MRPS33	MRP-S33|PTD003|S33mt	mitochondrial ribosomal protein S33	protein-coding
19-PTNLD28-TUMOR_peak_6012	chr1	120617677	120617851	+	12.29718	NA	Intergenic	Intergenic	-5447	NM_024408	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_34368	chr15	72460486	72460704	+	12.29193	NA	intron (NM_001012642, intron 4 of 11)	intron (NM_001012642, intron 4 of 11)	29541	NM_001012642	196996	Hs.596332	NM_001012642	HPRD:13161	GRAMD2	-	GRAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_61503	chr20	45977293	45977474	+	12.29193	NA	intron (NM_001281769, intron 1 of 3)	intron (NM_001281769, intron 1 of 3)	8250	NM_001281781	23613	Hs.446240	NM_012408	HPRD:10166	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger, MYND-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_44947	chr18	21594263	21594383	+	12.28899	NA	promoter-TSS (NM_001135993)	promoter-TSS (NM_001135993)	-61	NM_001135993	125488	Hs.128576	NM_153211	HPRD:08745	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
19-PTNLD28-TUMOR_peak_35841	chr16	2742224	2742509	+	12.28899	NA	intron (NM_018992, intron 1 of 5)	MER52C|LTR|ERV1	9871	NM_018992	54442	Hs.61960	NM_018992	HPRD:13768	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_87572	chr6	43246413	43246527	+	12.28857	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-19528	NM_006672	10864	Hs.485438	NM_006672	HPRD:05409	SLC22A7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_96765	chr7	158505594	158505762	+	12.28857	NA	Intergenic	Intergenic	-8156	NM_001281932	54892	Hs.18616	NM_017760	HPRD:10539	NCAPG2	CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding
19-PTNLD28-TUMOR_peak_13449	chr10	48427438	48427681	+	12.28857	NA	intron (NM_004962, intron 2 of 2)	intron (NM_004962, intron 2 of 2)	-10687	NM_016204	2658	Hs.279463	NM_016204	HPRD:05492	GDF2	BMP-9|BMP9|HHT5	growth differentiation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_40449	chr17	18151668	18151838	+	12.28857	NA	intron (NM_001256264, intron 18 of 29)	intron (NM_001256264, intron 18 of 29)	10117	NM_001256264	2314	Hs.513984	NM_002018	HPRD:02647	FLII	FLI|FLIL|Fli1	flightless I homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_57871	chr2	203129913	203130051	+	12.28294	NA	promoter-TSS (NM_015934)	promoter-TSS (NM_015934)	-533	NM_015934	51602	Hs.471104	NM_015934	HPRD:11036	NOP58	NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_44396	chr18	6541173	6541586	+	12.28198	NA	intron (NR_120518, intron 2 of 5)	intron (NR_120518, intron 2 of 5)	29964	NR_120518	100130480	Hs.646267	NM_001243517	ENSG00000265944	LINC01387	C18orf64	long intergenic non-protein coding RNA 1387	ncRNA
19-PTNLD28-TUMOR_peak_22772	chr12	6642669	6642977	+	12.28198	NA	promoter-TSS (NM_002046)	promoter-TSS (NM_002046)	-748	NM_001289745	2597	Hs.544577	NM_002046	HPRD:00713	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_51720	chr2	27346238	27346792	+	12.27497	NA	promoter-TSS (NM_032604)	promoter-TSS (NM_032604)	-142	NM_032604	84696	Hs.375791	NM_032604	HPRD:07468	ABHD1	LABH1	abhydrolase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_101128	chr8	134376914	134377036	+	12.27497	NA	Intergenic	LTR9|LTR|ERV1	-67428	NM_006096	10397	Hs.372914	NM_006096	HPRD:05586	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_33557	chr15	51178089	51178307	+	12.27497	NA	Intergenic	Intergenic	-22671	NM_007347	23431	Hs.413366	NM_007347	HPRD:06258	AP4E1	CPSQ4|SPG51	adaptor-related protein complex 4, epsilon 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_1529	chr1	24469415	24469636	+	12.27497	NA	intron (NM_021258, intron 1 of 6)	intron (NM_021258, intron 1 of 6)	250	NM_021258	58985	Hs.110915	NM_021258	HPRD:16108	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_36285	chr16	11351238	11351372	+	12.27497	NA	Intergenic	Intergenic	-1266	NM_003745	8651	Hs.50640	NM_003745	HPRD:04669	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_74908	chr4	34183696	34183836	+	12.27497	NA	Intergenic	Intergenic	-2061972	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
19-PTNLD28-TUMOR_peak_31342	chr14	75927221	75927378	+	12.27497	NA	intron (NM_130469, intron 2 of 3)	intron (NM_130469, intron 2 of 3)	28462	NM_001135049	122953	Hs.196482	NM_130469	HPRD:16360	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91619	chr7	23505201	23505452	+	12.27497	NA	intron (NM_006547, intron 2 of 14)	intron (NM_006547, intron 2 of 14)	4669	NM_006547	10643	Hs.700696	NM_006547	HPRD:16306	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_65830	chr22	44207669	44207886	+	12.27497	NA	intron (NM_198856, intron 1 of 29)	intron (NM_198856, intron 1 of 29)	440	NM_022785	64800	Hs.658996	NM_022785	HPRD:13391	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
19-PTNLD28-TUMOR_peak_90813	chr7	1183945	1184087	+	12.27386	NA	Intergenic	Intergenic	-6123	NM_001134395	84310	Hs.653258	NM_032350	HPRD:14413	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding
19-PTNLD28-TUMOR_peak_75595	chr4	69920405	69920799	+	12.27386	NA	Intergenic	Harlequin-int|LTR|ERV1	-34487	NM_001075	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	UDP glucuronosyltransferase 2 family, polypeptide B10	protein-coding
19-PTNLD28-TUMOR_peak_14276	chr10	73930085	73930394	+	12.27181	NA	intron (NM_001198800, intron 5 of 9)	AluJo|SINE|Alu	-45519	NM_173473	119504	Hs.426296	NM_173473	HPRD:12554	ANAPC16	APC16|C10orf104|CENP-27|MSAG|bA570G20.3	anaphase promoting complex subunit 16	protein-coding
19-PTNLD28-TUMOR_peak_1675	chr1	26678128	26678308	+	12.27181	NA	intron (NM_001039775, intron 1 of 19)	L3|LINE|CR1	2403	NM_001039775	55057	Hs.128738	NM_017977		AIM1L	CRYBG2	absent in melanoma 1-like	protein-coding
19-PTNLD28-TUMOR_peak_832	chr1	12238269	12238451	+	12.27181	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	11300	NM_001066	7133	Hs.256278	NM_001066	HPRD:01862	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	tumor necrosis factor receptor superfamily, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_2747	chr1	40857619	40857790	+	12.27181	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	-1313	NM_001198979	64744	Hs.15200	NM_022733	HPRD:12442	SMAP2	SMAP1L	small ArfGAP2	protein-coding
19-PTNLD28-TUMOR_peak_13633	chr10	52834128	52834683	+	12.27181	NA	exon (NM_006258, exon 1 of 18)	exon (NM_006258, exon 1 of 18)	171	NM_006258	5592	Hs.407535	NM_006258	HPRD:08910	PRKG1	1|AAT8|PKG|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase, cGMP-dependent, type I	protein-coding
19-PTNLD28-TUMOR_peak_96227	chr7	149438796	149438984	+	12.27181	NA	Intergenic	Intergenic	26788	NM_001290187	84626	Hs.299560	NM_032534	HPRD:11167	KRBA1	-	KRAB-A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23058	chr12	11916793	11917066	+	12.27181	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	114141	NM_001987	2120	Hs.504765	NM_001987	HPRD:15976	ETV6	TEL|TEL/ABL	ets variant 6	protein-coding
19-PTNLD28-TUMOR_peak_18232	chr11	44118501	44118668	+	12.27181	NA	intron (NM_000401, intron 1 of 13)	MIR|SINE|MIR	837	NM_000401	2132	Hs.368404	NM_000401	HPRD:00599	EXT2	SOTV	exostosin glycosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_32288	chr14	105164324	105164476	+	12.27181	NA	intron (NM_022489, intron 1 of 22)	intron (NM_022489, intron 1 of 22)	8457	NM_022489	64423	Hs.24956	NM_022489	HPRD:08648	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin, FH2 and WH2 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_86527	chr6	30815274	30815619	+	12.27044	NA	Intergenic	Intergenic	-34944	NM_001297652	780	Hs.631988	NM_001954	HPRD:02678	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_85990	chr6	24817695	24817904	+	12.26974	NA	intron (NM_001286445, intron 20 of 21)	L1HS|LINE|L1	-18675	NM_001282492	101928603	Hs.635133	NM_001282492		C6orf229	-	chromosome 6 open reading frame 229	protein-coding
19-PTNLD28-TUMOR_peak_87439	chr6	41651388	41651564	+	12.26855	NA	TTS (NM_007162)	TTS (NM_007162)	45281	NM_001300805	4188	Hs.520119	NM_005586	HPRD:07280	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_26845	chr12	122907013	122907306	+	12.26855	NA	promoter-TSS (NM_002956)	promoter-TSS (NM_002956)	-43	NM_002956	6249	Hs.524809	NM_002956	HPRD:01568	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-GLY domain containing linker protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63017	chr21	29091619	29091851	+	12.26855	NA	intron (NR_049807, intron 2 of 4)	MSTB-int|LTR|ERVL-MaLR	-2963	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
19-PTNLD28-TUMOR_peak_59826	chr20	11436278	11436446	+	12.26783	NA	Intergenic	Intergenic	-182331	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_67908	chr3	46106876	46107204	+	12.26783	NA	Intergenic	Intergenic	-38061	NM_005283	2829	Hs.248116	NM_005283	HPRD:02774	XCR1	CCXCR1|GPR5	chemokine (C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_90179	chr6	156609722	156610399	+	12.26783	NA	Intergenic	Kanga1b|DNA|TcMar-Tc2	-489004	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_78505	chr4	190552643	190552855	+	12.26783	NA	Intergenic	Intergenic	-28011	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_52938	chr2	60643467	60643653	+	12.26783	NA	Intergenic	Intergenic	-28980	NR_039631	100616473		NR_039631	miRBase:MI0016772	MIR4432	-	microRNA 4432	ncRNA
19-PTNLD28-TUMOR_peak_42416	chr17	53891803	53892105	+	12.26783	NA	Intergenic	Intergenic	63488	NM_001102402	58488	Hs.285218	NM_021213	HPRD:06927	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_32485	chr15	21134765	21134909	+	12.26783	NA	promoter-TSS (NR_028506).2	promoter-TSS (NR_028506).2	-212	NR_028506	440225	Hs.722451	NR_028506	ENSG00000258997	NF1P2	NF1HHS	neurofibromin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_104266	chr9	88137474	88137982	+	12.26783	NA	Intergenic	CpG	219216	NM_001286715	23287	Hs.719980	NM_015239	HPRD:08442	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68628	chr3	58802427	58802579	+	12.26783	NA	intron (NM_198463, intron 13 of 15)	L1PA2|LINE|L1	-7694	NR_110820	101929238	Hs.683953	NR_110820	ENSG00000242428	C3orf67-AS1	-	C3orf67 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24193	chr12	50640990	50641330	+	12.26783	NA	intron (NM_001113546, intron 2 of 10)	MLT1G1|LTR|ERVL-MaLR	-13165	NR_031625	100302220		NR_031625		MIR1293	MIRN1293|hsa-mir-1293	microRNA 1293	ncRNA
19-PTNLD28-TUMOR_peak_70273	chr3	123836461	123836581	+	12.26783	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	-15255	NR_049798	100847021		NR_049798		MIR5002	-	microRNA 5002	ncRNA
19-PTNLD28-TUMOR_peak_100976	chr8	131445075	131445301	+	12.26783	NA	intron (NM_018482, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	10718	NM_001247996	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_86222	chr6	27300708	27300873	+	12.26783	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	8250	NR_045612	387316	Hs.326753	NM_032030		VN1R10P	FKSG83|VNR6I1P|b24o18.2|hs6V1-1p	vomeronasal 1 receptor 10 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_5828	chr1	117139017	117139155	+	12.26783	NA	intron (NM_001007237, intron 7 of 10)	intron (NM_001007237, intron 7 of 10)	-25371	NM_001144822	965	Hs.34341	NM_001779	HPRD:01081	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
19-PTNLD28-TUMOR_peak_13547	chr10	50606054	50606411	+	12.26783	NA	Intergenic	CpG-2821	-2170	NM_001276451	644168	Hs.534530	NM_001080520		DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
19-PTNLD28-TUMOR_peak_73646	chr3	197133225	197133468	+	12.26783	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-107203	NM_001290983	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_60643	chr20	32988671	32988926	+	12.26783	NA	intron (NM_001257138, intron 3 of 23)	AluSz6|SINE|Alu	37757	NM_031483	83737	Hs.632272	NM_031483	ENSG00000078747	ITCH	AIF4|AIP4|NAPP1|dJ468O1.1	itchy E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_34000	chr15	65203796	65204155	+	12.26783	NA	promoter-TSS (NM_182703)	promoter-TSS (NM_182703)	-126	NM_182703	348094	Hs.207157	NM_182703	HPRD:14178	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_1161	chr1	17732761	17732914	+	12.26783	NA	TTS (NM_001136204)	TTS (NM_001136204)	32222	NM_001136204	55920	Hs.380857	NM_018715	HPRD:18171	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
19-PTNLD28-TUMOR_peak_53990	chr2	88480386	88480619	+	12.26783	NA	intron (NM_001244676, intron 5 of 8)	intron (NM_001244676, intron 5 of 8)	7844	NM_018271	55258	Hs.739080	NM_018271	HPRD:07715	THNSL2	SOFAT|THS2|TSH2	threonine synthase-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_104328	chr9	89679365	89679481	+	12.26783	NA	Intergenic	Intergenic	20717	NR_036691	494127	Hs.626316	NR_036691		LOC494127	-	NFYC pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58865	chr2	232950648	232950827	+	12.26783	NA	intron (NR_046477, intron 5 of 18)	AluJr4|SINE|Alu	124444	NR_046476	129563	Hs.732236	NM_152383	HPRD:14619	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_22569	chr12	3862180	3862459	+	12.26783	NA	promoter-TSS (NM_001144958)	promoter-TSS (NM_001144958)	47	NM_001144958	84766	Hs.504534	NM_032680	HPRD:10079	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
19-PTNLD28-TUMOR_peak_67349	chr3	30580780	30581077	+	12.26783	NA	Intergenic	Intergenic	-67066	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_89942	chr6	150156347	150156497	+	12.26783	NA	intron (NM_032832, intron 5 of 6)	intron (NM_032832, intron 5 of 6)	-28212	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40077	chr17	8125548	8125786	+	12.26744	NA	non-coding (NR_026951, exon 2 of 3)	non-coding (NR_026951, exon 2 of 3)	1694	NR_026951	284029	Hs.121692	NM_173621	HPRD:08755	LINC00324	C17orf44|NCRNA00324	long intergenic non-protein coding RNA 324	ncRNA
19-PTNLD28-TUMOR_peak_48045	chr19	18403895	18404305	+	12.26744	NA	Intergenic	Intergenic	11213	NR_036155	100422833		NR_036155	miRBase:MI0014232	MIR3188	-	microRNA 3188	ncRNA
19-PTNLD28-TUMOR_peak_80501	chr5	70084265	70084463	+	12.26335	NA	Intergenic	Intergenic	-112126	NM_021967	8293	Hs.726820	NM_021967	HPRD:04308	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A (telomeric)	protein-coding
19-PTNLD28-TUMOR_peak_101985	chr9	2872684	2872819	+	12.26164	NA	Intergenic	Intergenic	-28621	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_90014	chr6	151088773	151088934	+	12.26164	NA	intron (NM_001029884, intron 3 of 16)	intron (NM_001029884, intron 3 of 16)	-97962	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_101000	chr8	131641299	131641396	+	12.26164	NA	Intergenic	L2b|LINE|L2	-185441	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_88224	chr6	70646684	70647078	+	12.26164	NA	intron (NM_001858, intron 8 of 50)	intron (NM_001858, intron 8 of 50)	70433	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	collagen, type XIX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_75335	chr4	54630158	54630352	+	12.26164	NA	Intergenic	MIR|SINE|MIR	171132	NR_046827	100873955	Hs.351074	NR_046827		LNX1-AS2	-	LNX1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_73167	chr3	189903184	189903324	+	12.26164	NA	Intergenic	Intergenic	-63028	NM_001134418	55214	Hs.374191	NM_018192	HPRD:17270	LEPREL1	MCVD|MLAT4|P3H2	leprecan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_12547	chr10	26911135	26911300	+	12.26164	NA	Intergenic	Intergenic	-20820	NR_026794	731789	Hs.178186	NR_026794	ENSG00000231976	LINC00202-2	-	long intergenic non-protein coding RNA 202-2	ncRNA
19-PTNLD28-TUMOR_peak_43332	chr17	72659857	72659978	+	12.26164	NA	Intergenic	Intergenic	-7339	NM_175738	326624	Hs.351413	NM_175738	HPRD:06702	RAB37	-	RAB37, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_86217	chr6	27198303	27198412	+	12.26164	NA	Intergenic	tRNA-Leu-TTA|tRNA|tRNA	-17145	NM_005865	10279	Hs.274407	NM_005865	HPRD:06205	PRSS16	TSSP	protease, serine, 16 (thymus)	protein-coding
19-PTNLD28-TUMOR_peak_32030	chr14	100448933	100449209	+	12.26164	NA	Intergenic	Intergenic	-82680	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_56720	chr2	164429331	164429602	+	12.26164	NA	Intergenic	Intergenic	163047	NM_018086	55137	Hs.593650	NM_018086		FIGN	-	fidgetin	protein-coding
19-PTNLD28-TUMOR_peak_41247	chr17	36747540	36747875	+	12.26164	NA	intron (NM_025248, intron 1 of 18)	L3|LINE|CR1	14476	NM_025248	80725	Hs.448872	NM_025248	HPRD:11589	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_60982	chr20	37393709	37393837	+	12.26164	NA	intron (NM_024855, intron 5 of 8)	intron (NM_024855, intron 5 of 8)	16676	NM_024855	79913	Hs.371585	NM_024855	HPRD:08575	ACTR5	Arp5|INO80M	ARP5 actin-related protein 5 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_94443	chr7	101294210	101294364	+	12.26164	NA	Intergenic	Intergenic	-21711	NM_138403	93408	Hs.247831	NM_138403	HPRD:17620	MYL10	MYLC2PL|PLRLC	myosin, light chain 10, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_95681	chr7	137846381	137846522	+	12.26164	NA	Intergenic	Intergenic	37947	NR_039678	100616226		NR_039678	miRBase:MI0016819	MIR4468	-	microRNA 4468	ncRNA
19-PTNLD28-TUMOR_peak_1341	chr1	21868471	21868693	+	12.26164	NA	intron (NM_001127501, intron 1 of 10)	intron (NM_001127501, intron 1 of 10)	32724	NM_001177520	249	Hs.75431	NM_000478	HPRD:01377	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding
19-PTNLD28-TUMOR_peak_59077	chr2	238231157	238231471	+	12.26164	NA	Intergenic	Intergenic	91536	NM_057167	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_91016	chr7	4497864	4498183	+	12.26164	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-223907	NM_001037165	221937	Hs.487393	NM_001037165	HPRD:18750	FOXK1	FOXK1L	forkhead box K1	protein-coding
19-PTNLD28-TUMOR_peak_66583	chr3	11119262	11119494	+	12.26164	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-58468	NR_046647	100874090	Hs.628542	NR_046647	ENSG00000232287	SLC6A1-AS1	-	SLC6A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28709	chr13	95644786	95645148	+	12.26164	NA	Intergenic	Intergenic	231772	NR_110754	101927284	Hs.551673	NR_110754		LOC101927284	-	uncharacterized LOC101927284	ncRNA
19-PTNLD28-TUMOR_peak_79220	chr5	21615414	21615865	+	12.26164	NA	Intergenic	LTR17|LTR|ERV1	156050	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_56301	chr2	151476600	151476707	+	12.26164	NA	Intergenic	Intergenic	-8758	NR_110246	101929282	Hs.126866	NR_110244		LOC101929282	-	uncharacterized LOC101929282	ncRNA
19-PTNLD28-TUMOR_peak_36540	chr16	16221562	16221718	+	12.26164	NA	intron (NM_004996, intron 26 of 30)	intron (NM_004996, intron 26 of 30)	95688	NM_001171	368	Hs.442182	NM_001171	HPRD:04453	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding
19-PTNLD28-TUMOR_peak_26785	chr12	122230791	122230933	+	12.26021	NA	intron (NM_019034, intron 2 of 4)	intron (NM_019034, intron 2 of 4)	732	NM_019034	54509	Hs.644504	NM_019034	HPRD:15246	RHOF	ARHF|RIF	ras homolog family member F (in filopodia)	protein-coding
19-PTNLD28-TUMOR_peak_81	chr1	935471	935960	+	12.25886	NA	promoter-TSS (NM_021170)	promoter-TSS (NM_021170)	-163	NM_021170	57801	Hs.154029	NM_021170	HPRD:16273	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_61796	chr20	48950475	48950617	+	12.25886	NA	Intergenic	Intergenic	-12667	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_16506	chr11	726318	726758	+	12.25714	NA	intron (NM_022772, intron 19 of 20)	CpG-3663	20418	NM_022772	64787	Hs.55016	NM_022772	HPRD:10940	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
19-PTNLD28-TUMOR_peak_34198	chr15	69276640	69276841	+	12.25568	NA	intron (NR_033672, intron 2 of 16)	HERV1_LTRa|LTR|ERV1	-30294	NM_024505	79400	Hs.657932	NM_024505	HPRD:07359	NOX5	-	NADPH oxidase, EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_17224	chr11	12303353	12303630	+	12.25568	NA	Intergenic	Intergenic	-4956	NM_032867	84953	Hs.128196	NM_032867	HPRD:08610	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_41115	chr17	34510407	34510583	+	12.25568	NA	Intergenic	CpG	13652	NM_001001437	414062	Hs.454713	NM_001001437	HPRD:14426	CCL3L3	464.2|D17S1718|G0S19-2|LD78|LD78BETA|SCYA3L|SCYA3L1	chemokine (C-C motif) ligand 3-like 3	protein-coding
19-PTNLD28-TUMOR_peak_82665	chr5	140235659	140236144	+	12.25568	NA	exon (NM_018901, exon 1 of 4)	exon (NM_018901, exon 1 of 4)	433	NM_018901	56139	Hs.199343	NM_018901	HPRD:07328	PCDHA10	CNR8|CNRN8|CNRS8|CRNR8|PCDH-ALPHA10	protocadherin alpha 10	protein-coding
19-PTNLD28-TUMOR_peak_105459	chr9	114936974	114937174	+	12.25568	NA	intron (NM_001282640, intron 1 of 17)	CpG	503	NM_022486	64420	Hs.494827	NM_022486	HPRD:15452	SUSD1	-	sushi domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_37761	chr16	50480225	50480351	+	12.25568	NA	Intergenic	Intergenic	-77443	NM_001173984	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_43035	chr17	65038321	65038474	+	12.25568	NA	Intergenic	Intergenic	-2255	NM_000727	786	Hs.147989	NM_000727	HPRD:00249	CACNG1	CACNLG	calcium channel, voltage-dependent, gamma subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_45598	chr18	45756947	45757109	+	12.25568	NA	Intergenic	Intergenic	-93348	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_34675	chr15	78202802	78202950	+	12.25568	NA	Intergenic	Intergenic	16312	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_40373	chr17	17290779	17290933	+	12.25568	NA	Intergenic	Intergenic	84176	NM_020201	56953	Hs.513977	NM_020201	HPRD:12009	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_58052	chr2	207873453	207873703	+	12.25568	NA	Intergenic	Intergenic	69300	NM_173077	130749	Hs.684103	NM_173077	HPRD:07098	CPO	-	carboxypeptidase O	protein-coding
19-PTNLD28-TUMOR_peak_3395	chr1	49076682	49077086	+	12.25568	NA	intron (NM_032785, intron 9 of 13)	intron (NM_032785, intron 9 of 13)	-139004	NM_019073	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_12159	chr10	15055516	15055838	+	12.25568	NA	Intergenic	HERVE-int|LTR|ERV1	-30218	NM_018324	55301	Hs.24309	NM_018324	HPRD:07731	OLAH	AURA1|SAST|THEDC1	oleoyl-ACP hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_98757	chr8	53854259	53854408	+	12.25568	NA	TTS (NM_005285)	TTS (NM_005285)	1865	NM_005285	2831	Hs.248117	NM_005285		NPBWR1	GPR7	neuropeptides B/W receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_61637	chr20	47562469	47562655	+	12.25568	NA	intron (NM_006420, intron 3 of 38)	intron (NM_006420, intron 3 of 38)	24287	NM_006420	10564	Hs.62578	NM_006420	HPRD:09250	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_56913	chr2	171626802	171626986	+	12.25568	NA	promoter-TSS (NM_001290031)	promoter-TSS (NM_001290031)	-298	NM_001290031	285141	Hs.443729	NM_001289947		ERICH2	-	glutamate-rich 2	protein-coding
19-PTNLD28-TUMOR_peak_28718	chr13	95953642	95954151	+	12.25568	NA	promoter-TSS (NM_005845)	promoter-TSS (NM_005845)	-209	NM_005845	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_63948	chr21	45724787	45725073	+	12.25568	NA	intron (NM_001002021, intron 2 of 24)	intron (NM_001002021, intron 2 of 24)	5013	NM_001002021	5211	Hs.255093	NM_002626	HPRD:01385	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver	protein-coding
19-PTNLD28-TUMOR_peak_36438	chr16	14787222	14787362	+	12.25568	NA	intron (NM_003561, intron 1 of 3)	intron (NM_003561, intron 1 of 3)	1234	NM_003561	8399	Hs.567366	NM_003561	HPRD:04674	PLA2G10	GXPLA2|GXSPLA2|SPLA2	phospholipase A2, group X	protein-coding
19-PTNLD28-TUMOR_peak_97885	chr8	28060627	28060818	+	12.24965	NA	Intergenic	Intergenic	110138	NM_001284225	55140	Hs.491336	NM_018091	HPRD:10936	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_72750	chr3	183966663	183966819	+	12.24965	NA	promoter-TSS (NR_024534)	promoter-TSS (NR_024534)	18	NM_005787	10195	Hs.478481	NM_005787	HPRD:03067	ALG3	CDG1D|CDGS4|D16Ertd36e|NOT56L|Not56	ALG3, alpha-1,3- mannosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_72849	chr3	185215460	185215646	+	12.24965	NA	intron (NM_080652, intron 1 of 4)	intron (NM_080652, intron 1 of 4)	1292	NM_080652	90407	Hs.677570	NM_080652	HPRD:15539	TMEM41A	2900010K02Rik	transmembrane protein 41A	protein-coding
19-PTNLD28-TUMOR_peak_73692	chr3	197639709	197639978	+	12.24965	NA	intron (NM_032263, intron 8 of 11)	intron (NM_032263, intron 8 of 11)	36953	NM_001134435	84223	Hs.591675	NM_032263	HPRD:13746	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
19-PTNLD28-TUMOR_peak_29083	chr13	111268586	111268946	+	12.24942	NA	intron (NM_018210, intron 1 of 9)	CpG	835	NM_018210	55739	Hs.408324	NM_018210	HPRD:07698	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_15099	chr10	99187330	99187539	+	12.24942	NA	intron (NM_002629, intron 1 of 3)	intron (NM_002629, intron 1 of 3)	1407	NM_002629	5223	Hs.632918	NM_002629	HPRD:01392	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_106519	chr9	135111851	135111991	+	12.24942	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	74587	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_36663	chr16	19865321	19865490	+	12.24942	NA	intron (NM_153208, intron 9 of 9)	MER5B|DNA|hAT-Charlie	30746	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_51983	chr2	31108916	31109334	+	12.24942	NA	Intergenic	Intergenic	-78814	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_3399	chr1	49158040	49158209	+	12.24942	NA	intron (NM_032785, intron 6 of 13)	intron (NM_032785, intron 6 of 13)	84423	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_94363	chr7	100512821	100512978	+	12.24609	NA	Intergenic	MER54B|LTR|ERVL	-19307	NM_001282449	43	Hs.154495	NM_000665	HPRD:00010	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
19-PTNLD28-TUMOR_peak_39834	chr17	4753697	4753917	+	12.24609	NA	intron (NM_001024937, intron 1 of 31)	Plat_L3|LINE|CR1	17172	NM_153827	50488	Hs.443417	NM_015716	HPRD:11366	MINK1	B55|MAP4K6|MINK|YSK2|ZC3|hMINK|hMINKbeta	misshapen-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_72480	chr3	177076541	177076705	+	12.24443	NA	Intergenic	Intergenic	64393	NR_047465	100820709	Hs.518409	NR_047465		LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
19-PTNLD28-TUMOR_peak_38746	chr16	75272559	75272808	+	12.24306	NA	5' UTR (NM_001170721, exon 1 of 6)	5' UTR (NM_001170721, exon 1 of 6)	297	NM_001170721	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_50599	chr19	59108085	59108408	+	12.24306	NA	Intergenic	LTR10C|LTR|ERV1	21480	NR_026052	65996	Hs.541177	NM_023939	HPRD:14527	CENPBD1P1	-	CENPBD1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40400	chr17	17602247	17602404	+	12.24306	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	17538	NM_030665	10743	Hs.655395	NM_030665	HPRD:07406	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
19-PTNLD28-TUMOR_peak_94393	chr7	100807762	100807930	+	12.24278	NA	exon (NM_003378, exon 2 of 2)	exon (NM_003378, exon 2 of 2)	1006	NM_003378	7425	Hs.587325	NM_003378	HPRD:03717	VGF	-	VGF nerve growth factor inducible	protein-coding
19-PTNLD28-TUMOR_peak_87105	chr6	36591358	36591513	+	12.23973	NA	Intergenic	Intergenic	-1146	NR_037491	100500885		NR_037491	miRBase:MI0016433	MIR3925	-	microRNA 3925	ncRNA
19-PTNLD28-TUMOR_peak_68198	chr3	50275428	50275609	+	12.23534	NA	intron (NM_001282618, intron 1 of 7)	CpG	1929	NM_001282618	2771	Hs.77269	NM_002070	HPRD:00764	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_16785	chr11	3925514	3925675	+	12.23534	NA	intron (NM_001277962, intron 1 of 12)	L2|LINE|L2	48302	NR_039835	100616453		NR_039835	miRBase:MI0017319	MIR4687	-	microRNA 4687	ncRNA
19-PTNLD28-TUMOR_peak_86583	chr6	31154205	31154412	+	12.22886	NA	Intergenic	LTR2B|LTR|ERV1	-8632	NR_026816	100130889	Hs.670091	NM_001134284	ENSG00000204528	PSORS1C3	NCRNA00196	psoriasis susceptibility 1 candidate 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_61023	chr20	37922889	37923052	+	12.22886	NA	Intergenic	LTR33A|LTR|ERVL	-69579	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_43921	chr17	78944269	78944437	+	12.22886	NA	Intergenic	Intergenic	-21288	NM_024591	79643	Hs.514560	NM_024591	HPRD:08564	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
19-PTNLD28-TUMOR_peak_70463	chr3	125853122	125853260	+	12.22886	NA	intron (NM_001270364, intron 12 of 22)	intron (NM_001270364, intron 12 of 22)	30708	NR_046602	100874204	Hs.742339	NR_046602	ENSG00000250218	ALDH1L1-AS1	-	ALDH1L1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51982	chr2	31106813	31106947	+	12.22886	NA	Intergenic	Intergenic	-76569	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_5711	chr1	115660066	115660191	+	12.22886	NA	Intergenic	MER4B|LTR|ERV1	-28007	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_51160	chr2	11843854	11844117	+	12.22886	NA	intron (NM_001261428, intron 1 of 21)	MLT1H1|LTR|ERVL-MaLR	-20475	NM_001261427	23175	Hs.467740	NM_145693	HPRD:09271	LPIN1	PAP1	lipin 1	protein-coding
19-PTNLD28-TUMOR_peak_154	chr1	1376353	1376499	+	12.22886	NA	3' UTR (NM_022834, exon 3 of 3)	3' UTR (NM_022834, exon 3 of 3)	5523	NM_022834	64856	Hs.449009	NM_022834	HPRD:18292	VWA1	WARP	von Willebrand factor A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33079	chr15	37393852	37394057	+	12.22886	NA	promoter-TSS (NM_002399)	promoter-TSS (NM_002399)	-454	NM_002399	4212	Hs.510989	NM_002399	HPRD:03443	MEIS2	HsT18361|MRG1	Meis homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_67548	chr3	37986182	37986378	+	12.22886	NA	intron (NM_001008392, intron 1 of 7)	intron (NM_001008392, intron 1 of 7)	-24615	NR_029499	407015		NR_029499		MIR26A1	MIR26A|MIRN26A1	microRNA 26a-1	ncRNA
19-PTNLD28-TUMOR_peak_53443	chr2	72364730	72364850	+	12.22774	NA	intron (NM_001277742, intron 1 of 4)	intron (NM_001277742, intron 1 of 4)	10201	NM_001277742	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_64457	chr22	20695166	20695280	+	12.22774	NA	Intergenic	Intergenic	-53182	NM_003426	7625	Hs.517418	NM_003426	HPRD:01928	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
19-PTNLD28-TUMOR_peak_34669	chr15	78157291	78157419	+	12.22774	NA	Intergenic	Intergenic	-44113	NM_001301186	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_1254	chr1	20251857	20252132	+	12.22774	NA	Intergenic	Intergenic	-1884	NM_014589	30814	Hs.272372	NM_014589		PLA2G2E	GIIE sPLA2|sPLA2-IIE	phospholipase A2, group IIE	protein-coding
19-PTNLD28-TUMOR_peak_57176	chr2	178128993	178129624	+	12.22531	NA	promoter-TSS (NM_001145412)	promoter-TSS (NM_001145412)	551	NM_006164	4780	Hs.744006	NM_006164	HPRD:02732	NFE2L2	NRF2	nuclear factor, erythroid 2-like 2	protein-coding
19-PTNLD28-TUMOR_peak_5941	chr1	119679156	119679314	+	12.22403	NA	intron (NM_201263, intron 1 of 5)	intron (NM_201263, intron 1 of 5)	4060	NM_201263	10352	Hs.523506	NM_015836	HPRD:05295	WARS2	TrpRS	tryptophanyl tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_20092	chr11	75294726	75295113	+	12.22241	NA	Intergenic	Intergenic	21818	NM_001235	871	Hs.596449	NM_001235	HPRD:02968	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_66111	chr22	50740598	50740768	+	12.21903	NA	intron (NM_012401, intron 1 of 36)	intron (NM_012401, intron 1 of 36)	5318	NM_012401	23654	Hs.3989	NM_012401	HPRD:05050	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
19-PTNLD28-TUMOR_peak_106173	chr9	130332356	130332617	+	12.21611	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	-1090	NM_022833	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_35577	chr16	63085	63242	+	12.21611	NA	non-coding (NR_045117, exon 3 of 3)	non-coding (NR_045117, exon 3 of 3)	1608	NR_045117	100287029	Hs.592089	NR_045117		DDX11L10	DDX11L1|DDX11P	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 10	pseudo
19-PTNLD28-TUMOR_peak_90764	chr7	855064	855199	+	12.21611	NA	promoter-TSS (NM_001171946)	promoter-TSS (NM_001171946)	-63	NM_001171946	23353	Hs.438072	NM_025154	HPRD:16257	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_54077	chr2	90456834	90456935	+	12.21536	NA	Intergenic	Intergenic	1345000	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_3479	chr1	52033377	52033558	+	12.21536	NA	Intergenic	Intergenic	-48472	NM_001981	2060	Hs.83722	NM_001981	HPRD:08968	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
19-PTNLD28-TUMOR_peak_78255	chr4	184643878	184644296	+	12.21185	NA	Intergenic	CpG	63667	NM_199053	60684	Hs.443240	NM_021942	HPRD:10968	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
19-PTNLD28-TUMOR_peak_22518	chr12	3143457	3143556	+	12.21185	NA	intron (NM_201441, intron 9 of 11)	intron (NM_201441, intron 9 of 11)	-43015	NM_001168320	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_84341	chr5	177099454	177099553	+	12.21015	NA	promoter-TSS (NR_026921)	promoter-TSS (NR_026921)	-225	NR_026921	202181	Hs.189914	NR_026921		LOC202181	-	SUMO-interacting motifs containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62438	chr20	58781420	58781551	+	12.21015	NA	intron (NR_046099, intron 3 of 4)	L2a|LINE|L2	67937	NR_046099	284757	Hs.737441	NM_001004305	HPRD:17342	MIR646HG	-	MIR646 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_106647	chr9	137314215	137314401	+	12.21015	NA	intron (NM_001291921, intron 5 of 8)	intron (NM_001291921, intron 5 of 8)	15880	NM_001291921	6256	Hs.590886	NM_002957		RXRA	NR2B1	retinoid X receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_94448	chr7	101335086	101335444	+	12.21015	NA	Intergenic	Intergenic	-62689	NM_138403	93408	Hs.247831	NM_138403	HPRD:17620	MYL10	MYLC2PL|PLRLC	myosin, light chain 10, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_59979	chr20	17539440	17539631	+	12.21008	NA	promoter-TSS (NM_001161705)	promoter-TSS (NM_001161705)	70	NM_001278607	631	Hs.129702	NM_001195	HPRD:04494	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1, filensin	protein-coding
19-PTNLD28-TUMOR_peak_59086	chr2	238384438	238384718	+	12.21008	NA	Intergenic	Intergenic	-10475	NM_001281474	79083	Hs.102406	NM_024101	HPRD:09409	MLPH	SLAC2-A	melanophilin	protein-coding
19-PTNLD28-TUMOR_peak_65616	chr22	40592735	40593031	+	12.20832	NA	intron (NM_015088, intron 1 of 20)	MIRb|SINE|MIR	18954	NM_001162501	23112	Hs.372082	NM_015088	ENSG00000100354	TNRC6B	-	trinucleotide repeat containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_17766	chr11	28841468	28841690	+	12.20832	NA	Intergenic	Intergenic	-342484	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_55186	chr2	117310434	117310668	+	12.20832	NA	Intergenic	L1PA5|LINE|L1	-1261704	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_616	chr1	9551113	9551347	+	12.20832	NA	Intergenic	Intergenic	-48298	NM_032315	84275	Hs.568613	NM_032315		SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 (pyrimidine nucleotide carrier), member 33	protein-coding
19-PTNLD28-TUMOR_peak_68227	chr3	50456367	50456573	+	12.20832	NA	intron (NM_001005505, intron 3 of 37)	L3b|LINE|CR1	53705	NR_111914	11068	Hs.149443	NM_007022	HPRD:06143	CYB561D2	101F6|TSP10|XXcos-LUCA11.4	cytochrome b561 family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_104587	chr9	94741328	94741612	+	12.20832	NA	Intergenic	Intergenic	-29026	NM_004560	4920	Hs.98255	NM_004560	HPRD:03822	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_8529	chr1	179736476	179736695	+	12.20832	NA	intron (NM_173509, intron 1 of 4)	intron (NM_173509, intron 1 of 4)	24287	NM_173509	148753	Hs.729631	NM_173509	HPRD:14454	FAM163A	C1orf76|NDSP	family with sequence similarity 163, member A	protein-coding
19-PTNLD28-TUMOR_peak_65100	chr22	31090240	31090379	+	12.20832	NA	promoter-TSS (NM_001282739)	promoter-TSS (NM_001282739)	-484	NM_001282739	23762	Hs.517546	NM_030758	HPRD:09471	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_44743	chr18	14747963	14748323	+	12.20832	NA	promoter-TSS (NM_001145029)	promoter-TSS (NM_001145029)	-96	NM_001145029	374860	Hs.567889	NM_001029862	ENSG00000180777	ANKRD30B	NY-BR-1.1	ankyrin repeat domain 30B	protein-coding
19-PTNLD28-TUMOR_peak_21340	chr11	115447475	115447661	+	12.20832	NA	Intergenic	Intergenic	-72327	NM_001301043	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_89918	chr6	149554611	149554785	+	12.20832	NA	intron (NM_001292035, intron 1 of 5)	L2c|LINE|L2	14939	NM_001292035	23118	Hs.269775	NM_015093	HPRD:05483	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_20616	chr11	93868418	93868587	+	12.20832	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	6408	NM_015368	24145	Hs.591976	NM_015368	HPRD:10526	PANX1	MRS1|PX1|UNQ2529	pannexin 1	protein-coding
19-PTNLD28-TUMOR_peak_32070	chr14	100784694	100784823	+	12.20832	NA	Intergenic	Intergenic	-4921	NM_207117	283600	Hs.108268	NM_207117	HPRD:16620	SLC25A47	C14orf68|HDMCP	solute carrier family 25, member 47	protein-coding
19-PTNLD28-TUMOR_peak_32958	chr15	33306115	33306445	+	12.20832	NA	intron (NM_001277313, intron 6 of 20)	intron (NM_001277313, intron 6 of 20)	53953	NM_001103184	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_56303	chr2	151481902	151482164	+	12.20832	NA	Intergenic	Intergenic	-3378	NR_110246	101929282	Hs.126866	NR_110244		LOC101929282	-	uncharacterized LOC101929282	ncRNA
19-PTNLD28-TUMOR_peak_56416	chr2	156119999	156120104	+	12.20832	NA	Intergenic	Intergenic	564958	NM_001260509	3760	Hs.591606	NM_002239	HPRD:03323	KCNJ3	GIRK1|KGA|KIR3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
19-PTNLD28-TUMOR_peak_6131	chr1	143670673	143670771	+	12.20507	NA	Intergenic	Intergenic	-2199	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_76353	chr4	99579759	99580120	+	12.20290	NA	promoter-TSS (NM_005723)	promoter-TSS (NM_005723)	-127	NM_005723	10098	Hs.118118	NM_005723	HPRD:15513	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
19-PTNLD28-TUMOR_peak_66587	chr3	11187604	11187940	+	12.20290	NA	intron (NM_001098213, intron 1 of 1)	L1ME3|LINE|L1	-8442	NM_001098212	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_66450	chr3	9381512	9381677	+	12.20290	NA	Intergenic	Intergenic	-23123	NM_001114092	25917	Hs.443081	NM_015453	HPRD:15507	THUMPD3	-	THUMP domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_32885	chr15	31727671	31727791	+	12.20290	NA	Intergenic	Intergenic	108648	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_108385	chrX	53310204	53310952	+	12.20290	NA	intron (NM_001243197, intron 1 of 2)	intron (NM_001243197, intron 1 of 2)	218	NM_001243197	23096	Hs.496138	NM_015075	HPRD:10012	IQSEC2	BRAG1|MRX1	IQ motif and Sec7 domain 2	protein-coding
19-PTNLD28-TUMOR_peak_15957	chr10	121441693	121441864	+	12.20290	NA	Intergenic	Intergenic	30896	NM_004281	9531	Hs.523309	NM_004281	HPRD:04860	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2-associated athanogene 3	protein-coding
19-PTNLD28-TUMOR_peak_53474	chr2	73227325	73227478	+	12.20290	NA	intron (NM_144579, intron 8 of 13)	intron (NM_144579, intron 8 of 13)	71564	NM_144579	94097	Hs.368171	NM_144579	HPRD:18047	SFXN5	BBG-TCC	sideroflexin 5	protein-coding
19-PTNLD28-TUMOR_peak_8511	chr1	179144554	179144669	+	12.20290	NA	intron (NM_001168237, intron 1 of 12)	intron (NM_001168237, intron 1 of 12)	-32387	NM_001136000	27	Hs.159472	NM_005158	HPRD:01259	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_33631	chr15	54202414	54202618	+	12.20290	NA	Intergenic	LTR18B|LTR|ERVL	-102585	NM_001080534	440279	Hs.657273	NM_001080534	ENSG00000137766	UNC13C	-	unc-13 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_94291	chr7	99935871	99936027	+	12.20243	NA	intron (NR_103720, intron 2 of 3)	AluYc|SINE|Alu	-2019	NR_003613	5379	Hs.634244	NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	postmeiotic segregation increased 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_1055	chr1	16470392	16470606	+	12.20045	NA	intron (NM_004431, intron 3 of 16)	intron (NM_004431, intron 3 of 16)	12083	NM_004431	1969	Hs.171596	NM_004431	HPRD:01494	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
19-PTNLD28-TUMOR_peak_2637	chr1	39657412	39657570	+	12.19865	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	107652	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_24423	chr12	53342606	53342962	+	12.19635	NA	promoter-TSS (NM_000224)	promoter-TSS (NM_000224)	-59	NM_000224	3875	Hs.406013	NM_000224	HPRD:01020	KRT18	CYK18|K18	keratin 18	protein-coding
19-PTNLD28-TUMOR_peak_2049	chr1	32041181	32041433	+	12.19534	NA	promoter-TSS (NM_022164)	promoter-TSS (NM_022164)	-779	NM_001204414	64129	Hs.199368	NM_022164	HPRD:07122	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1436	chr1	23426750	23426995	+	12.19374	NA	intron (NM_001142546, intron 2 of 3)	intron (NM_001142546, intron 2 of 3)	56074	NR_036057	100422866		NR_036057		MIR3115	-	microRNA 3115	ncRNA
19-PTNLD28-TUMOR_peak_11436	chr1	245255282	245255438	+	12.19374	NA	intron (NM_001143943, intron 6 of 6)	intron (NM_001143943, intron 6 of 6)	-62927	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_55491	chr2	123418575	123419096	+	12.19374	NA	Intergenic	Intergenic	905714	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_59148	chr2	239208443	239208802	+	12.19374	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-11415	NM_022817	8864	Hs.58756	NM_003894	HPRD:04575	PER2	FASPS|FASPS1	period circadian clock 2	protein-coding
19-PTNLD28-TUMOR_peak_64967	chr22	29214482	29214794	+	12.19374	NA	Intergenic	Intergenic	-18078	NM_005080	7494	Hs.437638	NM_005080	HPRD:01908	XBP1	TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_77718	chr4	154945347	154945480	+	12.19374	NA	Intergenic	LTR1|LTR|ERV1	-235185	NM_003013	6423	Hs.481022	NM_003013	HPRD:16041	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled-related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_98675	chr8	49539787	49539917	+	12.19374	NA	intron (NR_105002, intron 2 of 3)	intron (NR_105002, intron 2 of 3)	6889	NR_105004	101929217	Hs.547790	NR_105004	ENSG00000253455	LOC101929217	-	uncharacterized LOC101929217	ncRNA
19-PTNLD28-TUMOR_peak_82736	chr5	140971760	140971905	+	12.19374	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	26790	NM_001079812	1729	Hs.529451	NM_005219	HPRD:03670	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|hDIA1	diaphanous-related formin 1	protein-coding
19-PTNLD28-TUMOR_peak_92502	chr7	49458607	49458880	+	12.19374	NA	Intergenic	Intergenic	-354514	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_44578	chr18	11119699	11119815	+	12.19374	NA	intron (NM_022068, intron 1 of 51)	intron (NM_022068, intron 1 of 51)	29004	NM_022068	63895	Hs.436902	NM_022068	HPRD:07636	PIEZO2	C18orf30|C18orf58|DA3|DA5|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo-type mechanosensitive ion channel component 2	protein-coding
19-PTNLD28-TUMOR_peak_71971	chr3	157329603	157329702	+	12.19374	NA	Intergenic	Intergenic	68519	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_31946	chr14	98101228	98101474	+	12.19374	NA	intron (NR_033943, intron 3 of 3)	intron (NR_033943, intron 3 of 3)	51644	NR_033943	100129345	Hs.23632	NR_033943	ENSG00000197176	LOC100129345	-	uncharacterized LOC100129345	ncRNA
19-PTNLD28-TUMOR_peak_51248	chr2	14988320	14988443	+	12.19374	NA	Intergenic	L1PA2|LINE|L1	213166	NM_001291410	653602	Hs.657296	NM_001291410		LOC653602	-	uncharacterized LOC653602	protein-coding
19-PTNLD28-TUMOR_peak_24115	chr12	49595726	49595970	+	12.19374	NA	Intergenic	Intergenic	-12741	NM_006009	7846	Hs.654422	NM_006009	HPRD:03959	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin, alpha 1a	protein-coding
19-PTNLD28-TUMOR_peak_81744	chr5	118945920	118946049	+	12.19374	NA	Intergenic	U13|snRNA|snRNA	-19270	NM_001163991	340069	Hs.713304	NM_182761	HPRD:14174	FAM170A	ZNFD	family with sequence similarity 170, member A	protein-coding
19-PTNLD28-TUMOR_peak_75357	chr4	55364836	55365205	+	12.19374	NA	Intergenic	Intergenic	-159075	NM_000222	3815	Hs.479754	NM_000222	HPRD:01287	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_3743	chr1	56922561	56922704	+	12.19374	NA	Intergenic	Intergenic	122625	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_31749	chr14	93110577	93110864	+	12.19374	NA	intron (NM_024832, intron 5 of 9)	intron (NM_024832, intron 5 of 9)	104327	NM_001008530	5641	Hs.18069	NM_005606	HPRD:04017	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
19-PTNLD28-TUMOR_peak_102040	chr9	4606176	4606342	+	12.19374	NA	intron (NM_001039395, intron 8 of 10)	L1PA3|LINE|L1	-56035	NM_203453	403313	Hs.107510	NM_203453	HPRD:17397	PPAPDC2	PDP1|PSDP|bA6J24.6	phosphatidic acid phosphatase type 2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102927	chr9	36163745	36164048	+	12.18932	NA	TTS (NM_022343)	TTS (NM_022343)	-5493	NM_005893	881	Hs.115460	NM_005893	HPRD:04907	CCIN	BTBD20|KBTBD14	calicin	protein-coding
19-PTNLD28-TUMOR_peak_58909	chr2	234118119	234118451	+	12.18932	NA	Intergenic	Intergenic	-41932	NM_001190266	55054	Hs.529322	NM_017974	HPRD:16498	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_93457	chr7	75737834	75738150	+	12.18932	NA	Intergenic	Intergenic	60655	NM_005918	4191	Hs.520967	NM_005918	HPRD:01099	MDH2	M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_94491	chr7	101929570	101929718	+	12.18860	NA	intron (NM_020979, intron 1 of 6)	CpG	1291	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18112	chr11	36476348	36476754	+	12.18860	NA	intron (NM_001160168, intron 5 of 5)	intron (NM_001160168, intron 5 of 5)	54004	NM_001160169	79899	Hs.19987	NM_024841	HPRD:07854	PRR5L	PROTOR2	proline rich 5 like	protein-coding
19-PTNLD28-TUMOR_peak_44748	chr18	14934606	14934902	+	12.18641	NA	Intergenic	Intergenic	-11512	NR_104164	400644	Hs.514732	NR_104164	ENSG00000266554	LINC01443	-	long intergenic non-protein coding RNA 1443	ncRNA
19-PTNLD28-TUMOR_peak_14199	chr10	73079219	73079549	+	12.18641	NA	intron (NR_033413, intron 1 of 4)	intron (NR_033413, intron 1 of 4)	374	NM_018344	55315	Hs.438419	NM_018344	HPRD:11570	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 (equilibrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_89547	chr6	134841595	134841719	+	12.18641	NA	Intergenic	Intergenic	82129	NR_038218	154092	Hs.223718	NR_038216		LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
19-PTNLD28-TUMOR_peak_21425	chr11	117102726	117103090	+	12.18641	NA	promoter-TSS (NM_207343)	promoter-TSS (NM_207343)	333	NM_004716	9159	Hs.648612	NM_004716		PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
19-PTNLD28-TUMOR_peak_59381	chr20	343243	343424	+	12.18641	NA	Intergenic	Intergenic	15963	NM_024958	80023	Hs.416024	NM_024958	HPRD:12791	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
19-PTNLD28-TUMOR_peak_70032	chr3	119013313	119013544	+	12.18641	NA	5' UTR (NM_020754, exon 1 of 12)	5' UTR (NM_020754, exon 1 of 12)	208	NM_020754	57514	Hs.668218	NM_020754	HPRD:16697	ARHGAP31	AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
19-PTNLD28-TUMOR_peak_83951	chr5	171841631	171841817	+	12.18211	NA	intron (NM_001017995, intron 2 of 12)	intron (NM_001017995, intron 2 of 12)	39803	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_63957	chr21	45845251	45845711	+	12.18211	NA	promoter-TSS (NR_109964)	promoter-TSS (NR_109964)	-35	NR_109964	101928607	Hs.666176	NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_19833	chr11	71751753	71751923	+	12.18211	NA	intron (NR_104476, intron 2 of 24)	intron (NR_104476, intron 2 of 24)	26501	NR_104178	100128494	Hs.713607	NR_104178		LOC100128494	-	uncharacterized LOC100128494	ncRNA
19-PTNLD28-TUMOR_peak_60479	chr20	30789346	30789631	+	12.18143	NA	intron (NM_002657, intron 2 of 2)	AluYc|SINE|Alu	6058	NM_002657	5326	Hs.154104	NM_002657	HPRD:05333	PLAGL2	ZNF900	pleiomorphic adenoma gene-like 2	protein-coding
19-PTNLD28-TUMOR_peak_28229	chr13	49948023	49948140	+	12.18083	NA	intron (NM_001287339, intron 4 of 9)	intron (NM_001287339, intron 4 of 9)	27593	NM_030925	81617	Hs.87159	NM_030925	HPRD:12993	CAB39L	MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39-like	protein-coding
19-PTNLD28-TUMOR_peak_21394	chr11	116706588	116706957	+	12.18083	NA	exon (NM_000039, exon 4 of 4)	exon (NM_000039, exon 4 of 4)	1566	NM_000039	335	Hs.93194	NM_000039	HPRD:02517	APOA1	-	apolipoprotein A-I	protein-coding
19-PTNLD28-TUMOR_peak_104444	chr9	91604086	91604312	+	12.18083	NA	Intergenic	L1MC5|LINE|L1	-1579	NM_001001938	286223	Hs.585118	NM_001001938	HPRD:12962	C9orf47	C9orf108|bA791O21.3	chromosome 9 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_98903	chr8	58473790	58473938	+	12.18083	NA	Intergenic	Intergenic	281762	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
19-PTNLD28-TUMOR_peak_96038	chr7	143065154	143065322	+	12.18083	NA	Intergenic	Intergenic	-5398	NM_001031690	9715	Hs.648908	NM_014690	HPRD:13816	FAM131B	-	family with sequence similarity 131, member B	protein-coding
19-PTNLD28-TUMOR_peak_39252	chr16	86652668	86652829	+	12.18083	NA	Intergenic	MIRb|SINE|MIR	40633	NM_005250	2300	Hs.533830	NM_005250	HPRD:07219	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
19-PTNLD28-TUMOR_peak_58457	chr2	219844677	219844987	+	12.18083	NA	TTS (NM_017521)	TTS (NM_017521)	3826	NR_024385	151300	Hs.420716	NR_015390		LINC00608	-	long intergenic non-protein coding RNA 608	ncRNA
19-PTNLD28-TUMOR_peak_35951	chr16	4010889	4011181	+	12.17447	NA	Intergenic	Intergenic	-10590	NR_120311	102724927	Hs.364739	NR_120311		LOC102724927	-	uncharacterized LOC102724927	ncRNA
19-PTNLD28-TUMOR_peak_102705	chr9	33403424	33403599	+	12.17447	NA	promoter-TSS (NM_001170)	promoter-TSS (NM_001170)	-994	NM_001170	364	Hs.455323	NM_001170	HPRD:04277	AQP7	AQP7L|AQP9|AQPap|GLYCQTL	aquaporin 7	protein-coding
19-PTNLD28-TUMOR_peak_18925	chr11	61722637	61722821	+	12.17447	NA	intron (NM_001300787, intron 2 of 9)	intron (NM_001300787, intron 2 of 9)	5373	NM_001300786	7439	Hs.524910	NM_004183	HPRD:01094	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
19-PTNLD28-TUMOR_peak_61903	chr20	49963133	49963443	+	12.17447	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	106226	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	ncRNA
19-PTNLD28-TUMOR_peak_47394	chr19	12175948	12176289	+	12.17447	NA	intron (NM_001136501, intron 1 of 3)	AluYc|SINE|Alu	572	NM_001136501	284391	Hs.646391	NM_001136501		ZNF844	-	zinc finger protein 844	protein-coding
19-PTNLD28-TUMOR_peak_71757	chr3	151349721	151350019	+	12.17447	NA	intron (NR_031678, intron 2 of 4)	intron (NR_031678, intron 2 of 4)	2550	NR_031678	100313773		NR_031678	miRBase:MI0006412	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
19-PTNLD28-TUMOR_peak_62241	chr20	55799154	55799401	+	12.17447	NA	intron (NM_001719, intron 2 of 6)	intron (NM_001719, intron 2 of 6)	10525	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_47186	chr19	10341650	10342135	+	12.17447	NA	promoter-TSS (NM_004230)	promoter-TSS (NM_004230)	56	NM_004230	9294	Hs.655405	NM_004230		S1PR2	AGR16|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_9653	chr1	205538170	205538388	+	12.17154	NA	exon (NM_181644, exon 1 of 10)	exon (NM_181644, exon 1 of 10)	167	NM_181644	148808	Hs.567714	NM_181644	HPRD:13228	MFSD4	UNQ3064	major facilitator superfamily domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_106901	chr9	141100022	141100276	+	12.17154	NA	Intergenic	MIRb|SINE|MIR	-6488	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	family with sequence similarity 157, member B	protein-coding
19-PTNLD28-TUMOR_peak_71766	chr3	151556894	151557010	+	12.17154	NA	intron (NR_110202, intron 1 of 3)	intron (NR_110202, intron 1 of 3)	25091	NM_001086	13	Hs.506908	NM_001086	HPRD:02640	AADAC	CES5A1|DAC	arylacetamide deacetylase	protein-coding
19-PTNLD28-TUMOR_peak_67899	chr3	45926100	45926268	+	12.17154	NA	intron (NM_001276378, intron 2 of 11)	intron (NM_001276378, intron 2 of 11)	-1812	NM_006641	10803	Hs.225946	NM_006641	HPRD:09200	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	chemokine (C-C motif) receptor 9	protein-coding
19-PTNLD28-TUMOR_peak_36618	chr16	19295092	19295274	+	12.17154	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-1922	NM_001256720	728276	Hs.632180	NM_001256720		CLEC19A	-	C-type lectin domain family 19, member A	protein-coding
19-PTNLD28-TUMOR_peak_93419	chr7	75267854	75268296	+	12.17154	NA	intron (NM_005338, intron 1 of 30)	CpG	100215	NM_005338	3092	Hs.329266	NM_005338	HPRD:03461	HIP1	HIP-I|ILWEQ	huntingtin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11418	chr1	244903398	244903625	+	12.17154	NA	Intergenic	LTR8|LTR|ERV1	87161	NR_123736	51029	Hs.498317	NM_016076	HPRD:15153	DESI2	C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_21	chr1	389080	389349	+	12.17154	NA	Intergenic	LTR22C|LTR|ERVK	21555	NM_001005277	81399	Hs.632360	NM_001005277	HPRD:14969	OR4F16	OR1-1|OR7-21	olfactory receptor, family 4, subfamily F, member 16	protein-coding
19-PTNLD28-TUMOR_peak_50982	chr2	9549062	9549168	+	12.17154	NA	intron (NM_022334, intron 4 of 5)	intron (NM_022334, intron 4 of 5)	14528	NM_004763	9270	Hs.467662	NM_004763	HPRD:06194	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_44509	chr18	9719831	9719986	+	12.17154	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	11680	NM_006868	11031	Hs.99528	NM_006868	HPRD:05751	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_5974	chr1	120230144	120230330	+	12.17154	NA	Intergenic	Intergenic	-24182	NM_006623	26227	Hs.487296	NM_006623	HPRD:06047	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_97198	chr8	12040193	12040395	+	12.17154	NA	non-coding (NR_003494, exon 6 of 6)	non-coding (NR_003494, exon 6 of 6)	-5518	NR_046354	729689	Hs.741074	NR_046354		FAM90A2P	-	family with sequence similarity 90, member A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_60728	chr20	34204842	34204966	+	12.16869	NA	intron (NM_003116, intron 1 of 11)	intron (NM_003116, intron 1 of 11)	1095	NM_003116	6676	Hs.123159	NM_003116	HPRD:04330	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
19-PTNLD28-TUMOR_peak_80468	chr5	69209214	69209412	+	12.16868	NA	Intergenic	Intergenic	-111759	NM_022968	8293	Hs.726820	NM_021967	HPRD:04308	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A (telomeric)	protein-coding
19-PTNLD28-TUMOR_peak_31405	chr14	77416959	77417343	+	12.16247	NA	Intergenic	Intergenic	77891	NM_024496	64207	Hs.179260	NM_024496	HPRD:10713	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_45120	chr18	29673134	29673387	+	12.16159	NA	intron (NM_198128, intron 1 of 4)	CpG	691	NM_001191324	51444	Hs.302408	NM_016271	HPRD:11508	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_9219	chr1	201425660	201425775	+	12.15690	NA	Intergenic	Intergenic	12582	NR_073080	23612	Hs.268557	NM_012396	HPRD:09519	PHLDA3	TIH1	pleckstrin homology-like domain, family A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_52316	chr2	41605050	41605326	+	12.15618	NA	Intergenic	LTR7C|LTR|ERV1	-499507	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LOC388942	-	uncharacterized LOC388942	ncRNA
19-PTNLD28-TUMOR_peak_90195	chr6	157101590	157101774	+	12.15618	NA	promoter-TSS (NR_039676)	promoter-TSS (NR_039676)	-817	NR_039676	100616154		NR_039676	miRBase:MI0016817	MIR4466	-	microRNA 4466	ncRNA
19-PTNLD28-TUMOR_peak_102464	chr9	21813018	21813281	+	12.15618	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	10514	NM_002451	4507	Hs.193268	NM_002451	HPRD:01134	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
19-PTNLD28-TUMOR_peak_43373	chr17	73073611	73073849	+	12.15321	NA	Intergenic	CpG	-10092	NM_001271765	9121	Hs.592095	NM_004695	HPRD:04856	SLC16A5	MCT5|MCT6	solute carrier family 16 (monocarboxylate transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_6155	chr1	143960637	143960774	+	12.15321	NA	Intergenic	Intergenic	-47545	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_3201	chr1	46601241	46601456	+	12.15218	NA	Intergenic	Intergenic	-2640	NM_001114172	8503	Hs.655387	NM_003629	HPRD:05831	PIK3R3	p55|p55-GAMMA	phosphoinositide-3-kinase, regulatory subunit 3 (gamma)	protein-coding
19-PTNLD28-TUMOR_peak_87549	chr6	42989869	42989988	+	12.15044	NA	TTS (NM_057161)	TTS (NM_057161)	543	NM_033112	88745	Hs.309231	NM_033112	HPRD:12859	RRP36	C6orf153|dJ20C7.4	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_67771	chr3	43771714	43771908	+	12.15044	NA	Intergenic	LTR16A1|LTR|ERVL	39436	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_6711	chr1	150854298	150854439	+	12.15044	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-5124	NM_001668	405	Hs.632446	NM_001668	HPRD:00524	ARNT	HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
19-PTNLD28-TUMOR_peak_9484	chr1	204026615	204026777	+	12.15043	NA	Intergenic	AluSq2|SINE|Alu	-15550	NM_005686	9580	Hs.201671	NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY (sex determining region Y)-box 13	protein-coding
19-PTNLD28-TUMOR_peak_65848	chr22	44555252	44555529	+	12.15043	NA	intron (NM_001003828, intron 12 of 13)	intron (NM_001003828, intron 12 of 13)	-13446	NM_001137605	64098	Hs.658995	NM_022141	HPRD:16285	PARVG	-	parvin, gamma	protein-coding
19-PTNLD28-TUMOR_peak_57497	chr2	191849403	191849586	+	12.15043	NA	intron (NM_139266, intron 15 of 22)	intron (NM_139266, intron 15 of 22)	29482	NM_007315	6772	Hs.642990	NM_007315	HPRD:02777	STAT1	CANDF7|ISGF-3|STAT91	signal transducer and activator of transcription 1, 91kDa	protein-coding
19-PTNLD28-TUMOR_peak_42046	chr17	46534686	46534859	+	12.15043	NA	intron (NR_110804, intron 5 of 5)	intron (NR_110804, intron 5 of 5)	12577	NR_110804	101927166	Hs.149244	NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
19-PTNLD28-TUMOR_peak_30219	chr14	50831647	50831868	+	12.15043	NA	intron (NM_001282236, intron 2 of 8)	L2c|LINE|L2	30885	NM_004196	8814	Hs.280881	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
19-PTNLD28-TUMOR_peak_94408	chr7	100901646	100902178	+	12.15043	NA	Intergenic	Intergenic	-13541	NM_016068	51024	Hs.423968	NM_016068	HPRD:12352	FIS1	TTC11	fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_22845	chr12	7144320	7145130	+	12.15043	NA	Intergenic	LTR12C|LTR|ERV1	-18883	NM_005768	10162	Hs.655248	NM_005768	HPRD:12816	LPCAT3	C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_3215	chr1	46791380	46791498	+	12.15043	NA	Intergenic	LTR2B|LTR|ERV1	-14410	NR_045789	387338	Hs.163424	NM_199044		NSUN4	SHTAP	NOP2/Sun domain family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_27719	chr13	31439538	31439720	+	12.15043	NA	Intergenic	Intergenic	-17070	NR_103813	440132	Hs.729493	NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
19-PTNLD28-TUMOR_peak_1274	chr1	20669846	20669996	+	12.15043	NA	intron (NM_001039500, intron 16 of 21)	CpG-583	52509	NM_001039500	127731	Hs.205178	NM_144623	HPRD:08732	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
19-PTNLD28-TUMOR_peak_5616	chr1	113351920	113352084	+	12.15043	NA	Intergenic	Intergenic	41263	NR_103746	100996702	Hs.632431	NR_103746	ENSG00000215866	LINC01356	-	long intergenic non-protein coding RNA 1356	ncRNA
19-PTNLD28-TUMOR_peak_31283	chr14	75046565	75046745	+	12.15043	NA	intron (NM_000428, intron 3 of 35)	L2a|LINE|L2	32379	NM_000428	4053	Hs.512776	NM_000428	HPRD:03650	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_46622	chr19	1929453	1929998	+	12.15043	NA	Intergenic	Intergenic	-11436	NM_001319	1455	Hs.651905	NM_001319	HPRD:03738	CSNK1G2	CK1g2	casein kinase 1, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_108115	chrX	46039691	46039974	+	12.15043	NA	Intergenic	L1PB1|LINE|L1	147277	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_68980	chr3	71773742	71774193	+	12.15043	NA	intron (NM_173359, intron 2 of 7)	CpG	559	NM_001134651	317649	Hs.581355	NM_173359	HPRD:10687	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
19-PTNLD28-TUMOR_peak_109817	chrX	151806172	151806576	+	12.15043	NA	promoter-TSS (NM_018558)	promoter-TSS (NM_018558)	-263	NM_018558	55879	Hs.283081	NM_018558		GABRQ	THETA	gamma-aminobutyric acid (GABA) A receptor, theta	protein-coding
19-PTNLD28-TUMOR_peak_49281	chr19	44280517	44280739	+	12.15043	NA	intron (NM_002250, intron 2 of 8)	intron (NM_002250, intron 2 of 8)	4781	NM_002250	3783	Hs.10082	NM_002250	HPRD:04130	KCNN4	IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding
19-PTNLD28-TUMOR_peak_81483	chr5	108746306	108746493	+	12.14963	NA	promoter-TSS (NM_014819)	promoter-TSS (NM_014819)	-724	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_49649	chr19	48421504	48421693	+	12.14946	NA	promoter-TSS (NR_004436)	promoter-TSS (NR_004436)	-88	NR_004436	100126799	Hs.723085	NR_004436		SNAR-A2	SNAR-A53129250	small ILF3/NF90-associated RNA A2	snRNA
19-PTNLD28-TUMOR_peak_69112	chr3	75146585	75146715	+	12.14933	NA	Intergenic	L1PA2|LINE|L1	-116977	NR_049831	100846999		NR_049831		MIR4444-2	-	microRNA 4444-2	ncRNA
19-PTNLD28-TUMOR_peak_109524	chrX	133756345	133756508	+	12.14933	NA	intron (NM_021796, intron 1 of 2)	intron (NM_021796, intron 1 of 2)	36087	NM_021796	10761	Hs.496811	NM_021796	HPRD:02245	PLAC1	CT92|OOSP2L	placenta-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_42263	chr17	48690443	48690610	+	12.14933	NA	intron (NM_018896, intron 26 of 37)	MIR3|SINE|MIR	-21692	NM_001144070	8714	Hs.463421	NM_003786	HPRD:06826	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding
19-PTNLD28-TUMOR_peak_94143	chr7	98002360	98002554	+	12.14933	NA	intron (NM_018842, intron 1 of 13)	intron (NM_018842, intron 1 of 13)	27970	NM_018842	55971	Hs.656063	NM_018842	HPRD:11270	BAIAP2L1	IRTKS	BAI1-associated protein 2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_47816	chr19	16528634	16528769	+	12.14933	NA	intron (NM_001258374, intron 11 of 23)	intron (NM_001258374, intron 11 of 23)	54122	NM_001258374	58513	Hs.654639	NM_021235	HPRD:09445	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4897	chr1	93459753	93459912	+	12.14933	NA	Intergenic	ERVL-E-int|LTR|ERVL	-32753	NM_001252270	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_96648	chr7	155561145	155561261	+	12.14933	NA	intron (NM_053043, intron 16 of 17)	intron (NM_053043, intron 16 of 17)	43764	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
19-PTNLD28-TUMOR_peak_44814	chr18	19904135	19904671	+	12.14933	NA	Intergenic	Intergenic	93475	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_91764	chr7	28458739	28459040	+	12.14933	NA	intron (NM_182898, intron 1 of 10)	intron (NM_182898, intron 1 of 10)	6745	NM_182898	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_101062	chr8	133204414	133204522	+	12.14933	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	-86956	NM_001145095	10086	Hs.285026	NM_005712	HPRD:06823	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
19-PTNLD28-TUMOR_peak_87239	chr6	37776407	37776570	+	12.14878	NA	Intergenic	AluY|SINE|Alu	-10819	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_13622	chr10	52499780	52500369	+	12.14396	NA	intron (NM_001079516, intron 1 of 5)	intron (NM_001079516, intron 1 of 5)	386	NM_001079516	653308	Hs.710005	NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3	N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B	protein-coding
19-PTNLD28-TUMOR_peak_24974	chr12	64540923	64541309	+	12.14396	NA	3' UTR (NM_020762, exon 22 of 22)	3' UTR (NM_020762, exon 22 of 22)	74960	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_90338	chr6	159538625	159538915	+	12.14396	NA	Intergenic	Intergenic	-51659	NM_032532	84624	Hs.520525	NM_032532	HPRD:13547	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96427	chr7	151458509	151458659	+	12.14396	NA	intron (NM_001040633, intron 3 of 15)	LTR8A|LTR|ERV1	53373	NM_001040633	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_91798	chr7	29386277	29386451	+	12.14396	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-132964	NM_001293076	1124	Hs.654611	NM_004067	HPRD:04173	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_84113	chr5	173400307	173400572	+	12.14396	NA	Intergenic	Intergenic	-15723	NM_001144954	133491	Hs.131469	NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_67603	chr3	39188595	39188962	+	12.14326	NA	intron (NM_033027, intron 1 of 4)	intron (NM_033027, intron 1 of 4)	6324	NM_033027	64651	Hs.370950	NM_033027	HPRD:07347	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine-serine-rich nuclear protein 1	protein-coding
19-PTNLD28-TUMOR_peak_96768	chr7	158604287	158604461	+	12.13880	NA	intron (NM_020728, intron 1 of 21)	L1MEg|LINE|L1	17945	NM_020728	57488	Hs.490795	NM_020728	HPRD:13053	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin-like protein 2	protein-coding
19-PTNLD28-TUMOR_peak_63191	chr21	33836183	33836514	+	12.13880	NA	intron (NR_104472, intron 2 of 6)	intron (NR_104472, intron 2 of 6)	51603	NR_104472	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_32448	chr15	20399070	20399226	+	12.13477	NA	Intergenic	Intergenic	-88849	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_106295	chr9	131447205	131447390	+	12.13477	NA	promoter-TSS (NM_001248000)	promoter-TSS (NM_001248000)	-68	NM_001248000	6418	Hs.436687	NM_003011	HPRD:09023	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_59590	chr20	3909270	3909368	+	12.13390	NA	Intergenic	AluY|SINE|Alu	-11109	NR_031722	100302282		NR_031722		MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
19-PTNLD28-TUMOR_peak_48553	chr19	33740119	33740465	+	12.13390	NA	Intergenic	Intergenic	-23536	NM_019849	56301	Hs.58679	NM_019849	HPRD:12137	SLC7A10	HASC-1|asc-1	solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10	protein-coding
19-PTNLD28-TUMOR_peak_52949	chr2	60983728	60984081	+	12.13390	NA	intron (NM_022894, intron 1 of 21)	intron (NM_022894, intron 1 of 21)	539	NM_022894	64895	Hs.387471	NM_022894	HPRD:11420	PAPOLG	-	poly(A) polymerase gamma	protein-coding
19-PTNLD28-TUMOR_peak_102594	chr9	29214206	29214369	+	12.13390	NA	Intergenic	Intergenic	-1289	NM_001258282	158038	Hs.662661	NM_152570	HPRD:08715	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_67210	chr3	24562894	24563154	+	12.13390	NA	promoter-TSS (NR_039955)	promoter-TSS (NR_039955)	-98	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_51257	chr2	15701923	15702195	+	12.13390	NA	promoter-TSS (NM_015909)	promoter-TSS (NM_015909)	-587	NM_015909	51594	Hs.467759	NM_015909	HPRD:10473	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
19-PTNLD28-TUMOR_peak_84200	chr5	175433109	175433318	+	12.13390	NA	Intergenic	Intergenic	-37895	NM_032361	84321	Hs.484227	NM_032361	HPRD:09497	THOC3	THO3|hTREX45	THO complex 3	protein-coding
19-PTNLD28-TUMOR_peak_3751	chr1	57110912	57111523	+	12.13285	NA	intron (NM_006252, intron 1 of 8)	CpG	227	NM_006252	5563	Hs.437039	NM_006252	HPRD:02735	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_47848	chr19	16845221	16845337	+	12.13285	NA	intron (NM_001290355, intron 4 of 20)	AluY|SINE|Alu	14492	NM_001290355	284434	Hs.406014	NM_001007525	HPRD:17337	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_36828	chr16	23291090	23291269	+	12.13285	NA	Intergenic	Intergenic	-22412	NM_000336	6338	Hs.414614	NM_000336	HPRD:02861	SCNN1B	BESC1|ENaCb|ENaCbeta|SCNEB	sodium channel, non-voltage-gated 1, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_58484	chr2	220159403	220159533	+	12.13285	NA	promoter-TSS (NR_029688)	promoter-TSS (NR_029688)	-546	NR_029688	406944		NR_029688		MIR153-1	MIRN153-1	microRNA 153-1	ncRNA
19-PTNLD28-TUMOR_peak_79915	chr5	54522368	54522605	+	12.13285	NA	exon (NM_001190787, exon 3 of 7)	exon (NM_001190787, exon 3 of 7)	657	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
19-PTNLD28-TUMOR_peak_78500	chr4	190225447	190225634	+	12.13285	NA	Intergenic	Intergenic	-355220	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_90412	chr6	161867544	161867834	+	12.13285	NA	intron (NM_004562, intron 9 of 11)	intron (NM_004562, intron 9 of 11)	-172582	NM_020133	56895	Hs.353175	NM_020133	HPRD:12437	AGPAT4	1-AGPAT4|LPAAT-delta|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_35894	chr16	3078236	3078510	+	12.13086	NA	TTS (NM_024339)	TTS (NM_024339)	-4086	NM_001288668	54985	Hs.423103	NM_017885	HPRD:13636	HCFC1R1	HPIP	host cell factor C1 regulator 1 (XPO1 dependent)	protein-coding
19-PTNLD28-TUMOR_peak_22333	chr12	77358	77636	+	12.12794	NA	Intergenic	Intergenic	9890	NR_026823	677784	Hs.722487	NR_026823	ENSG00000206114	FAM138D	F379	family with sequence similarity 138, member D	ncRNA
19-PTNLD28-TUMOR_peak_7244	chr1	155911238	155911516	+	12.12711	NA	promoter-TSS (NM_181885)	promoter-TSS (NM_181885)	-103	NM_181885	339403	Hs.449914	NM_181885	HPRD:16421	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin/insulin-like family peptide receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_16919	chr11	7678597	7678821	+	12.12670	NA	Intergenic	Intergenic	16112	NM_016229	51700	Hs.414362	NM_016229	HPRD:06435	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_54573	chr2	102383547	102383799	+	12.12670	NA	intron (NM_145686, intron 2 of 30)	intron (NM_145686, intron 2 of 30)	69135	NM_145687	9448	Hs.701013	NM_004834	HPRD:05235	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_77900	chr4	164253759	164254110	+	12.12670	NA	promoter-TSS (NM_000909)	promoter-TSS (NM_000909)	13	NM_000909	4886	Hs.519057	NM_000909	HPRD:01215	NPY1R	NPY1-R|NPYR	neuropeptide Y receptor Y1	protein-coding
19-PTNLD28-TUMOR_peak_26493	chr12	117146815	117147146	+	12.12670	NA	Intergenic	Intergenic	28863	NM_024738	79794	Hs.592011	NM_024738	HPRD:07962	C12orf49	-	chromosome 12 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_102930	chr9	36207177	36207317	+	12.12670	NA	intron (NM_001184761, intron 4 of 4)	intron (NM_001184761, intron 4 of 4)	16394	NM_007096	1211	Hs.522114	NM_001833	HPRD:00351	CLTA	LCA	clathrin, light chain A	protein-coding
19-PTNLD28-TUMOR_peak_77096	chr4	134486595	134486904	+	12.12670	NA	Intergenic	Intergenic	416279	NM_020815	57575	Hs.192859	NM_020815		PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
19-PTNLD28-TUMOR_peak_88474	chr6	80381371	80381866	+	12.12670	NA	intron (NM_031469, intron 1 of 3)	intron (NM_031469, intron 1 of 3)	40618	NM_031469	83699	Hs.302772	NM_031469	HPRD:15331	SH3BGRL2	-	SH3 domain binding glutamate-rich protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_100046	chr8	108183482	108183618	+	12.12670	NA	Intergenic	Intergenic	326704	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_91998	chr7	35293645	35293844	+	12.12670	NA	promoter-TSS (NM_001166220)	promoter-TSS (NM_001166220)	-33	NM_001077653	57057	Hs.404167	NM_020417	HPRD:06931	TBX20	ASD4	T-box 20	protein-coding
19-PTNLD28-TUMOR_peak_60946	chr20	36829827	36829985	+	12.12670	NA	Intergenic	Intergenic	-36206	NM_198951	7052	Hs.517033	NM_004613	HPRD:01825	TGM2	G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC	transglutaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_10092	chr1	219240305	219240592	+	12.12670	NA	Intergenic	Intergenic	106682	NR_038845	643723	Hs.519774	NR_038845		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_18106	chr11	36411472	36411634	+	12.12670	NA	intron (NM_024841, intron 2 of 9)	L2b|LINE|L2	-10994	NM_001160169	79899	Hs.19987	NM_024841	HPRD:07854	PRR5L	PROTOR2	proline rich 5 like	protein-coding
19-PTNLD28-TUMOR_peak_102625	chr9	31937734	31937841	+	12.12670	NA	Intergenic	L1PA3|LINE|L1	-446814	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_89243	chr6	117503083	117503268	+	12.12670	NA	Intergenic	L1PA3|LINE|L1	-83546	NM_182645	245806	Hs.99324	NM_153453	HPRD:18282	VGLL2	VGL2|VITO1	vestigial-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_4301	chr1	69586000	69586288	+	12.12670	NA	Intergenic	L1PA2|LINE|L1	-623240	NM_001114120	55635	Hs.445098	NM_017779	HPRD:10879	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32241	chr14	104200191	104200314	+	12.12670	NA	TTS (NM_024071)	TTS (NM_024071)	18171	NM_001198953	79038	Hs.592322	NM_024071	HPRD:15733	ZFYVE21	ZF21	zinc finger, FYVE domain containing 21	protein-coding
19-PTNLD28-TUMOR_peak_51482	chr2	20814052	20814239	+	12.12499	NA	Intergenic	Intergenic	-21837	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_54129	chr2	92229561	92229798	+	12.12499	NA	Intergenic	Intergenic	100520	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_21181	chr11	112188869	112189227	+	12.12499	NA	Intergenic	Intergenic	-57465	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_47139	chr19	9732109	9732293	+	12.12499	NA	promoter-TSS (NM_152289)	promoter-TSS (NM_152289)	43	NR_122038	284385	Hs.651747	NM_001242812	ENSG00000267106	ZNF561-AS1	C19orf82	ZNF561 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_35024	chr15	85892485	85892599	+	12.12365	NA	Intergenic	AluJb|SINE|Alu	-31305	NM_007200	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_61747	chr20	48639770	48639937	+	12.12282	NA	Intergenic	Intergenic	18313	NR_051976	100887755	Hs.195705	NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24716	chr12	57024069	57024204	+	12.12282	NA	promoter-TSS (NM_001300905)	promoter-TSS (NM_001300905)	-21	NM_001300905	11176	Hs.314263	NM_013449	HPRD:10417	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain, 2A	protein-coding
19-PTNLD28-TUMOR_peak_7066	chr1	154400160	154400373	+	12.12282	NA	intron (NM_181359, intron 1 of 8)	intron (NM_181359, intron 1 of 8)	22597	NM_181359	3570	Hs.135087	NM_000565	HPRD:01000	IL6R	CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
19-PTNLD28-TUMOR_peak_87034	chr6	35569718	35569888	+	12.11478	NA	intron (NM_001145775, intron 6 of 11)	intron (NM_001145775, intron 6 of 11)	62763	NR_049873	100847048		NR_049873	miRBase:MI0019295	MIR5690	-	microRNA 5690	ncRNA
19-PTNLD28-TUMOR_peak_6584	chr1	149286504	149286604	+	12.10790	NA	promoter-TSS (NR_111934)	promoter-TSS (NR_111934)	-576	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
19-PTNLD28-TUMOR_peak_42151	chr17	47785973	47786155	+	12.10790	NA	promoter-TSS (NM_005827)	promoter-TSS (NM_005827)	-751	NM_005827	10237	Hs.154073	NM_005827	HPRD:10237	SLC35B1	UGTREL1	solute carrier family 35, member B1	protein-coding
19-PTNLD28-TUMOR_peak_93553	chr7	76939099	76939340	+	12.10540	NA	TTS (NM_017439)	TTS (NM_017439)	-105296	NR_110073	101927243	Hs.547753	NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
19-PTNLD28-TUMOR_peak_10448	chr1	225954731	225955064	+	12.10155	NA	Intergenic	Intergenic	-10618	NM_003133	6726	Hs.511425	NM_003133	HPRD:02830	SRP9	ALURBP	signal recognition particle 9kDa	protein-coding
19-PTNLD28-TUMOR_peak_13240	chr10	44185190	44185314	+	12.10155	NA	Intergenic	CpG	-40926	NM_006973	7580	Hs.522885	NM_006973	HPRD:01924	ZNF32	KOX30	zinc finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_84206	chr5	175487936	175488313	+	12.10155	NA	intron (NR_103794, intron 1 of 2)	CpG	934	NR_103794	100996385	Hs.382347	NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
19-PTNLD28-TUMOR_peak_7645	chr1	161059310	161059477	+	12.10155	NA	promoter-TSS (NM_030916)	promoter-TSS (NM_030916)	-8	NM_030916	81607	Hs.492490	NM_030916	HPRD:17934	PVRL4	EDSS1|LNIR|PRR4|nectin-4	poliovirus receptor-related 4	protein-coding
19-PTNLD28-TUMOR_peak_96670	chr7	156403359	156403579	+	12.10155	NA	Intergenic	Intergenic	-7580	NR_103858	100506380	Hs.721001	NR_103858	ENSG00000182648	LINC01006	-	long intergenic non-protein coding RNA 1006	ncRNA
19-PTNLD28-TUMOR_peak_254	chr1	2509656	2510058	+	12.10155	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	-8042	NR_036637	127281	Hs.462033	NM_152371	HPRD:14513	FAM213B	C1orf93	family with sequence similarity 213, member B	protein-coding
19-PTNLD28-TUMOR_peak_65608	chr22	40394048	40394443	+	12.10155	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	3292	NM_138435	113828	Hs.197680	NM_138435		FAM83F	-	family with sequence similarity 83, member F	protein-coding
19-PTNLD28-TUMOR_peak_26985	chr12	125097865	125098150	+	12.10155	NA	Intergenic	MIR|SINE|MIR	-45997	NM_001206654	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_97636	chr8	22773016	22773177	+	12.10155	NA	intron (NM_144962, intron 3 of 6)	L2b|LINE|L2	12325	NM_144962	157310	Hs.491242	NM_144962	HPRD:11424	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine-binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_41583	chr17	41132785	41132992	+	12.10155	NA	promoter-TSS (NM_001142654)	promoter-TSS (NM_001142654)	306	NM_173079	146923	Hs.632255	NM_173079	HPRD:15283	RUNDC1	-	RUN domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58296	chr2	217354889	217355031	+	12.10155	NA	Intergenic	Intergenic	-8560	NM_000998	6168	Hs.433701	NM_000998		RPL37A	L37A	ribosomal protein L37a	protein-coding
19-PTNLD28-TUMOR_peak_74051	chr4	4109071	4109460	+	12.10155	NA	Intergenic	CpG	119356	NM_177998	133060	Hs.534544	NM_177998	HPRD:07421	OTOP1	-	otopetrin 1	protein-coding
19-PTNLD28-TUMOR_peak_70075	chr3	120004012	120004249	+	12.09851	NA	Intergenic	CpG	-40988	NM_153002	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_68110	chr3	49314381	49314701	+	12.09851	NA	promoter-TSS (NM_198562)	promoter-TSS (NM_198562)	-33	NM_198562	375341	Hs.403828	NM_198562		C3orf62	-	chromosome 3 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_16566	chr11	1363512	1363668	+	12.09851	NA	Intergenic	Intergenic	32652	NR_029409	255512	Hs.588291	NR_029409	ENSG00000255153	TOLLIP-AS1	-	TOLLIP antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_81834	chr5	123392894	123393224	+	12.09851	NA	Intergenic	Intergenic	381154	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_15898	chr10	120260694	120260809	+	12.09851	NA	Intergenic	Intergenic	94409	NM_004248	2834	Hs.248119	NM_004248	HPRD:02937	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_60064	chr20	19256296	19256762	+	12.09851	NA	intron (NR_024564, intron 2 of 7)	intron (NR_024564, intron 2 of 7)	8711	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	ncRNA
19-PTNLD28-TUMOR_peak_63423	chr21	38120106	38120362	+	12.09851	NA	exon (NM_005069, exon 11 of 11)	exon (NM_005069, exon 11 of 11)	48243	NM_009586	6493	Hs.146186	NM_005069	HPRD:02935	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded family bHLH transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_8848	chr1	185039258	185039508	+	12.09851	NA	intron (NM_007212, intron 1 of 6)	MIRb|SINE|MIR	24832	NM_007212	6045	Hs.591490	NM_007212	HPRD:07028	RNF2	BAP-1|BAP1|DING|HIPI3|RING1B|RING2	ring finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_72073	chr3	159724399	159724573	+	12.09851	NA	intron (NR_108088, intron 6 of 9)	intron (NR_108088, intron 6 of 9)	-13950	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
19-PTNLD28-TUMOR_peak_72254	chr3	169962501	169962641	+	12.09851	NA	intron (NM_002740, intron 2 of 17)	HY3|scRNA|scRNA	22351	NM_002740	5584	Hs.478199	NM_002740	HPRD:02105	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C, iota	protein-coding
19-PTNLD28-TUMOR_peak_91008	chr7	4082739	4083117	+	12.09851	NA	intron (NM_152744, intron 17 of 44)	intron (NM_152744, intron 17 of 44)	-86389	NM_001079653	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_98028	chr8	30293755	30293929	+	12.09851	NA	intron (NM_001008712, intron 1 of 6)	L3|LINE|CR1	-50925	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	RBPMS-AS1	-	RBPMS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78163	chr4	182873715	182873863	+	12.09851	NA	Intergenic	Intergenic	191879	NR_027107	90768	Hs.175465	NM_178838		MGC45800	-	uncharacterized LOC90768	ncRNA
19-PTNLD28-TUMOR_peak_74236	chr4	7126854	7127086	+	12.09851	NA	Intergenic	Intergenic	-21867	NR_027441	730971	Hs.591718	NR_027441		FLJ36777	-	uncharacterized LOC730971	ncRNA
19-PTNLD28-TUMOR_peak_82069	chr5	131430458	131430694	+	12.09851	NA	Intergenic	Intergenic	21091	NM_000758	1437	Hs.1349	NM_000758	HPRD:00734	CSF2	GMCSF	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_88582	chr6	85336113	85336413	+	12.09851	NA	Intergenic	L1PA2|LINE|L1	137691	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_42111	chr17	47326793	47327191	+	12.09851	NA	intron (NR_034161, intron 1 of 2)	intron (NR_034161, intron 1 of 2)	1387	NR_034161	124871	Hs.446890	NM_001007529	HPRD:16950	FLJ40194	-	uncharacterized FLJ40194	ncRNA
19-PTNLD28-TUMOR_peak_35999	chr16	4425880	4426042	+	12.09773	NA	intron (NM_138440, intron 1 of 1)	MIR3|SINE|MIR	4112	NM_138440	114990	Hs.372579	NM_138440	HPRD:10587	VASN	SLITL2	vasorin	protein-coding
19-PTNLD28-TUMOR_peak_4375	chr1	75199466	75199616	+	12.09629	NA	promoter-TSS (NM_001130043)	promoter-TSS (NM_001130043)	-449	NM_001889	1429	Hs.83114	NM_001889	HPRD:00437	CRYZ	-	crystallin, zeta (quinone reductase)	protein-coding
19-PTNLD28-TUMOR_peak_2941	chr1	43282252	43282443	+	12.09418	NA	promoter-TSS (NM_001017922)	promoter-TSS (NM_001017922)	-429	NM_001017922	114625	Hs.439437	NM_018538	HPRD:12355	ERMAP	BTN5|PRO2801|RD|SC	erythroblast membrane-associated protein (Scianna blood group)	protein-coding
19-PTNLD28-TUMOR_peak_41286	chr17	37353773	37353973	+	12.09418	NA	promoter-TSS (NM_199248)	promoter-TSS (NM_199248)	83	NM_199247	782	Hs.635	NM_000723	HPRD:11743	CACNB1	CAB1|CACNLB1|CCHLB1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_50506	chr19	57999447	57999884	+	12.09418	NA	intron (NM_001098496, intron 1 of 2)	L2|LINE|L2	586	NM_001098492	79744	Hs.744339	NM_024691	HPRD:08665	ZNF419	ZNF419A	zinc finger protein 419	protein-coding
19-PTNLD28-TUMOR_peak_91669	chr7	25005474	25005709	+	12.09418	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	14240	NM_015550	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_93302	chr7	73897056	73897190	+	12.09088	NA	intron (NM_005685, intron 1 of 26)	L1ME3A|LINE|L1	29003	NM_001199207	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32209	chr14	103781745	103782072	+	12.09082	NA	Intergenic	Intergenic	-18431	NM_001969	1983	Hs.433702	NM_001969	HPRD:03417	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
19-PTNLD28-TUMOR_peak_51318	chr2	16689482	16689745	+	12.09082	NA	Intergenic	CpG	157521	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_67115	chr3	22843275	22843398	+	12.09082	NA	Intergenic	L1PA2|LINE|L1	-401448	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_10068	chr1	217804121	217804249	+	12.09082	NA	promoter-TSS (NM_138796)	promoter-TSS (NM_138796)	259	NM_018040	55105	Hs.362343	NM_018040	HPRD:07657	GPATCH2	CT110|GPATC2|PPP1R30	G patch domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_73206	chr3	190415896	190416084	+	12.09082	NA	Intergenic	Intergenic	164475	NM_001146686	647309	Hs.518490	NM_001146686	ENSG00000205835	GMNC	GEMC1	geminin coiled-coil domain containing	protein-coding
19-PTNLD28-TUMOR_peak_78879	chr5	10307563	10307977	+	12.09082	NA	5' UTR (NM_138809, exon 1 of 6)	5' UTR (NM_138809, exon 1 of 6)	398	NM_138809	134147	Hs.192586	NM_138809		CMBL	JS-1	carboxymethylenebutenolidase homolog (Pseudomonas)	protein-coding
19-PTNLD28-TUMOR_peak_24789	chr12	58005114	58005238	+	12.09082	NA	promoter-TSS (NM_182947)	promoter-TSS (NM_182947)	-42	NR_046223	115557	Hs.61581	NM_133483	HPRD:13573	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding
19-PTNLD28-TUMOR_peak_25691	chr12	96336584	96336856	+	12.09082	NA	promoter-TSS (NM_152435)	promoter-TSS (NM_152435)	-292	NM_182496	120935	Hs.210377	NM_182496	HPRD:08268	CCDC38	-	coiled-coil domain containing 38	protein-coding
19-PTNLD28-TUMOR_peak_54970	chr2	112425207	112425346	+	12.09082	NA	Intergenic	Intergenic	-172584	NR_024373	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_109686	chrX	146981370	146981525	+	12.09082	NA	Intergenic	LTR59|LTR|ERV1	-12022	NM_001185082	2332	Hs.103183	NM_002024	HPRD:02398	FMR1	FMRP|FRAXA|POF|POF1	fragile X mental retardation 1	protein-coding
19-PTNLD28-TUMOR_peak_27105	chr12	127618264	127618447	+	12.09082	NA	Intergenic	Intergenic	-73413	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_73091	chr3	188649454	188649566	+	12.09082	NA	Intergenic	Intergenic	15918	NR_046873	100874043	Hs.616287	NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92234	chr7	43983379	43983503	+	12.09082	NA	non-coding (NR_003655, exon 16 of 16)	non-coding (NR_003655, exon 16 of 16)	17406	NM_015983	51619	Hs.19196	NM_015983	HPRD:14242	UBE2D4	HBUCE1	ubiquitin-conjugating enzyme E2D 4 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_105786	chr9	122805842	122806032	+	12.09082	NA	Intergenic	Intergenic	201391	NR_029604	406939		NR_029604	miRBase:MI0000262	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
19-PTNLD28-TUMOR_peak_61631	chr20	47462420	47462603	+	12.09082	NA	Intergenic	Intergenic	-18091	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_49591	chr19	47808675	47808933	+	12.09082	NA	Intergenic	Intergenic	-4300	NM_001736	728	Hs.2161	NM_001736	HPRD:00224	C5AR1	C5A|C5AR|C5R1|CD88	complement component 5a receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_57896	chr2	203735922	203736160	+	12.09082	NA	5' UTR (NM_001288623, exon 1 of 13)	5' UTR (NM_001288623, exon 1 of 13)	154	NM_001288623	130026	Hs.516629	NM_138468	HPRD:12446	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_106390	chr9	132524434	132524561	+	12.09082	NA	Intergenic	Intergenic	-9153	NM_004878	9536	Hs.146688	NM_004878	HPRD:05528	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
19-PTNLD28-TUMOR_peak_109650	chrX	140500416	140500578	+	12.09082	NA	Intergenic	Intergenic	-90346	NR_037183	619455	Hs.590784	NR_037183		SPANXA2-OT1	CXorf18	SPANXA2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_40593	chr17	19881070	19881513	+	12.09082	NA	promoter-TSS (NM_007202)	promoter-TSS (NM_007202)	-122	NM_007202	11216	Hs.642676	NM_007202	HPRD:05259	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
19-PTNLD28-TUMOR_peak_66088	chr22	50517289	50517472	+	12.09082	NA	intron (NM_139202, intron 5 of 11)	MER74A|LTR|ERVL	6401	NM_139202	23209	Hs.517729	NM_015166	HPRD:05800	MLC1	LVM|MLC|VL	megalencephalic leukoencephalopathy with subcortical cysts 1	protein-coding
19-PTNLD28-TUMOR_peak_55275	chr2	119907386	119907505	+	12.09082	NA	Intergenic	Intergenic	9026	NM_182528	165257	Hs.433493	NM_182528	HPRD:12713	C1QL2	C1QTNF10|CTRP10	complement component 1, q subcomponent-like 2	protein-coding
19-PTNLD28-TUMOR_peak_60549	chr20	31765723	31765873	+	12.09082	NA	intron (NM_080574, intron 5 of 8)	intron (NM_080574, intron 5 of 8)	9838	NM_080574	140683	Hs.125960	NM_080574	HPRD:12781	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_31820	chr14	94468185	94468383	+	12.09082	NA	intron (NR_024183, intron 5 of 10)	intron (NR_024183, intron 5 of 10)	4642	NR_024183	256369	Hs.143845	NM_152777	HPRD:12651	LINC00521	C14orf48|c14_5713	long intergenic non-protein coding RNA 521	ncRNA
19-PTNLD28-TUMOR_peak_41589	chr17	41176533	41176670	+	12.08984	NA	promoter-TSS (NM_005440)	promoter-TSS (NM_005440)	-657	NM_005440	8153	Hs.603111	NM_005440	HPRD:03332	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_57276	chr2	181845370	181845548	+	12.08984	NA	promoter-TSS (NM_001278554)	promoter-TSS (NM_001278554)	151	NM_006357	10477	Hs.470804	NM_006357	HPRD:05000	UBE2E3	UBCH9|UbcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
19-PTNLD28-TUMOR_peak_43417	chr17	73401125	73401421	+	12.08984	NA	promoter-TSS (NR_037449)	promoter-TSS (NR_037449)	516	NM_002086	2885	Hs.444356	NM_002086	HPRD:00150	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor-bound protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86603	chr6	31367472	31367599	+	12.08805	NA	promoter-TSS (NM_001289154).3	promoter-TSS (NM_001289154).3	-26	NM_001289152	100507436	Hs.130838	NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
19-PTNLD28-TUMOR_peak_104976	chr9	102130801	102130902	+	12.08754	NA	intron (NR_102271, intron 3 of 5)	intron (NR_102271, intron 3 of 5)	6688	NR_102271	100996569	Hs.745280	NR_102270	ENSG00000271086	NAMA	-	non-protein coding RNA, associated with MAP kinase pathway and growth arrest	ncRNA
19-PTNLD28-TUMOR_peak_50377	chr19	55959152	55959344	+	12.08754	NA	Intergenic	Intergenic	-5018	NM_001145176	729956	Hs.6664	NM_175908	ENSG00000187902	SHISA7	-	shisa family member 7	protein-coding
19-PTNLD28-TUMOR_peak_41954	chr17	45500829	45501616	+	12.08754	NA	intron (NM_152347, intron 23 of 24)	CpG	68764	NR_033934	653479	Hs.537279	NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_35942	chr16	3872490	3872658	+	12.08754	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	57547	NM_001079846	1387	Hs.459759	NM_004380	HPRD:02534	CREBBP	CBP|KAT3A|RSTS	CREB binding protein	protein-coding
19-PTNLD28-TUMOR_peak_5618	chr1	113397394	113397678	+	12.08754	NA	Intergenic	LTR12C|LTR|ERV1	-4271	NR_103746	100996702	Hs.632431	NR_103746	ENSG00000215866	LINC01356	-	long intergenic non-protein coding RNA 1356	ncRNA
19-PTNLD28-TUMOR_peak_74229	chr4	7083830	7083991	+	12.08754	NA	Intergenic	LTR55|LTR|ERV	-14110	NM_025196	80273	Hs.443723	NM_025196		GRPEL1	HMGE	GrpE-like 1, mitochondrial (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_33018	chr15	34729649	34730024	+	12.08754	NA	promoter-TSS (NR_027409)	promoter-TSS (NR_027409)	-169	NR_027409	23015	Hs.182982	NM_181077	HPRD:09974	GOLGA8A	GM88	golgin A8 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_23330	chr12	19999632	19999759	+	12.08754	NA	Intergenic	Intergenic	-167924	NR_040098	100506393	Hs.658356	NR_040098	ENSG00000256287	LOC100506393	-	uncharacterized LOC100506393	ncRNA
19-PTNLD28-TUMOR_peak_81462	chr5	107716921	107717497	+	12.08717	NA	exon (NM_001163315, exon 1 of 9)	exon (NM_001163315, exon 1 of 9)	590	NM_001163315	64839	Hs.657225	NM_022824	HPRD:10950	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine-rich repeat protein 17	protein-coding
19-PTNLD28-TUMOR_peak_90939	chr7	2673066	2673230	+	12.08717	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	1545	NM_025250	80727	Hs.440899	NM_025250	HPRD:12333	TTYH3	-	tweety family member 3	protein-coding
19-PTNLD28-TUMOR_peak_85878	chr6	21589601	21589737	+	12.08173	NA	Intergenic	Intergenic	-4303	NM_003107	6659	Hs.643910	NM_003107	HPRD:01695	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
19-PTNLD28-TUMOR_peak_41824	chr17	43510237	43510420	+	12.07448	NA	promoter-TSS (NM_174919)	promoter-TSS (NM_174919)	-46	NM_174919	201176	Hs.205326	NM_174919	HPRD:12477	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
19-PTNLD28-TUMOR_peak_18451	chr11	47236899	47237034	+	12.06872	NA	intron (NM_001300734, intron 1 of 5)	intron (NM_001300734, intron 1 of 5)	473	NM_001300734	1643	Hs.700338	NM_000107	HPRD:02886	DDB2	DDBB|UV-DDB2	damage-specific DNA binding protein 2, 48kDa	protein-coding
19-PTNLD28-TUMOR_peak_18444	chr11	47206862	47207297	+	12.06872	NA	intron (NM_016223, intron 1 of 10)	intron (NM_016223, intron 1 of 10)	353	NM_001184975	29763	Hs.334639	NM_016223	HPRD:05937	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
19-PTNLD28-TUMOR_peak_16750	chr11	3497650	3497777	+	12.06785	NA	Intergenic	HERVE-int|LTR|ERV1	-84568	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95274	chr7	129921131	129921301	+	12.06785	NA	intron (NM_001869, intron 9 of 10)	Plat_L3|LINE|CR1	-11758	NM_001163446	51200	Hs.93764	NM_016352	HPRD:07405	CPA4	CPA3	carboxypeptidase A4	protein-coding
19-PTNLD28-TUMOR_peak_98481	chr8	42365149	42365325	+	12.06785	NA	intron (NM_006749, intron 1 of 10)	intron (NM_006749, intron 1 of 10)	-6259	NM_001257180	6575	Hs.653173	NM_006749	HPRD:08865	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1	solute carrier family 20 (phosphate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_46575	chr19	1261890	1262161	+	12.06763	NA	Intergenic	Intergenic	-7240	NM_001300829	1153	Hs.618145	NM_001280	HPRD:08375	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
19-PTNLD28-TUMOR_peak_6970	chr1	153509213	153509372	+	12.06763	NA	promoter-TSS (NM_014624)	promoter-TSS (NM_014624)	-575	NM_014624	6277	Hs.275243	NM_014624	HPRD:00237	S100A6	2A9|5B10|CABP|CACY|PRA	S100 calcium binding protein A6	protein-coding
19-PTNLD28-TUMOR_peak_6938	chr1	153316297	153316492	+	12.06703	NA	intron (NM_020393, intron 4 of 8)	LTR19B|LTR|ERV1	4628	NM_020393	57115	Hs.58356	NM_020393	HPRD:16298	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB	peptidoglycan recognition protein 4	protein-coding
19-PTNLD28-TUMOR_peak_11315	chr1	241912468	241912735	+	12.05993	NA	intron (NM_144625, intron 12 of 26)	intron (NM_144625, intron 12 of 26)	97021	NM_144625	128025	Hs.97527	NM_144625	HPRD:13412	WDR64	-	WD repeat domain 64	protein-coding
19-PTNLD28-TUMOR_peak_85216	chr6	8406306	8406518	+	12.05993	NA	Intergenic	HERVL-int|LTR|ERVL	29388	NM_001142541	51000	Hs.285847	NM_015948	HPRD:11577	SLC35B3	C6orf196|PAPST2	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3	protein-coding
19-PTNLD28-TUMOR_peak_50739	chr2	568211	568377	+	12.05993	NA	Intergenic	Intergenic	109145	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_91866	chr7	30899613	30899740	+	12.05993	NA	intron (NM_032222, intron 13 of 17)	intron (NM_032222, intron 13 of 17)	-51739	NM_198098	358	Hs.76152	NM_000385	HPRD:00140	AQP1	AQP-CHIP|CHIP28|CO	aquaporin 1 (Colton blood group)	protein-coding
19-PTNLD28-TUMOR_peak_83970	chr5	171997015	171997212	+	12.05993	NA	Intergenic	Intergenic	-71163	NM_001142651	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
19-PTNLD28-TUMOR_peak_101952	chr9	1837597	1837799	+	12.05993	NA	Intergenic	Intergenic	-177521	NM_003070	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_23318	chr12	19683607	19683755	+	12.05993	NA	Intergenic	Intergenic	90166	NM_001267043	121536	Hs.126497	NM_153207		AEBP2	-	AE binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_85623	chr6	15997715	15997847	+	12.05993	NA	Intergenic	Intergenic	-131536	NM_013262	29116	Hs.484738	NM_013262	HPRD:17621	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_78464	chr4	189065019	189065222	+	12.05993	NA	intron (NM_178556, intron 4 of 5)	intron (NM_178556, intron 4 of 5)	4522	NM_178556	339976	Hs.348618	NM_178556	HPRD:08774	TRIML1	RNF209	tripartite motif family-like 1	protein-coding
19-PTNLD28-TUMOR_peak_81556	chr5	111865343	111865487	+	12.05993	NA	Intergenic	HERVE_a-int|LTR|ERV1	-98718	NR_104672	102467214	Hs.124613	NR_104672		LOC102467214	-	uncharacterized LOC102467214	ncRNA
19-PTNLD28-TUMOR_peak_37892	chr16	54457976	54458112	+	12.05993	NA	Intergenic	Intergenic	-137666	NM_024336	79191	Hs.499205	NM_024336	HPRD:17162	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_44437	chr18	7871736	7871909	+	12.05993	NA	intron (NM_001105244, intron 2 of 32)	L2b|LINE|L2	304508	NM_001105244	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_4811	chr1	90621791	90621927	+	12.05993	NA	Intergenic	Intergenic	161181	NM_182976	284695	Hs.306221	NM_181781	HPRD:15774	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
19-PTNLD28-TUMOR_peak_46451	chr18	77915761	77915879	+	12.05993	NA	3' UTR (NM_032510, exon 3 of 3)	3' UTR (NM_032510, exon 3 of 3)	10013	NR_028340	100130522	Hs.352602	NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54429	chr2	99409886	99409992	+	12.05993	NA	TTS (NM_207362)	TTS (NM_207362)	-62350	NM_012214	11320	Hs.177576	NM_012214	HPRD:06860	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	protein-coding
19-PTNLD28-TUMOR_peak_44971	chr18	22296618	22296776	+	12.05993	NA	Intergenic	L1PA2|LINE|L1	88551	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LOC729950	-	uncharacterized LOC729950	ncRNA
19-PTNLD28-TUMOR_peak_25319	chr12	72601642	72602031	+	12.05993	NA	Intergenic	Intergenic	-64693	NM_013381	29953	Hs.199814	NM_013381	HPRD:09506	TRHDE	PAP-II|PGPEP2|TRH-DE	thyrotropin-releasing hormone degrading enzyme	protein-coding
19-PTNLD28-TUMOR_peak_62784	chr21	15496785	15496908	+	12.05993	NA	intron (NM_198996, intron 9 of 9)	HERV1_LTRa|LTR|ERV1	82408	NM_198996	149998	Hs.139907	NM_198996	HPRD:14193	LIPI	CT17|LPDL|PLA1C	lipase, member I	protein-coding
19-PTNLD28-TUMOR_peak_41526	chr17	40561580	40561763	+	12.05967	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	13667	NM_012232	284119	Hs.437191	NM_012232	HPRD:04433	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
19-PTNLD28-TUMOR_peak_64602	chr22	22316312	22316554	+	12.05967	NA	intron (NM_001282112, intron 13 of 17)	intron (NM_001282112, intron 13 of 17)	-9183	NM_014634	9647	Hs.112728	NM_014634	HPRD:10163	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent, 1F	protein-coding
19-PTNLD28-TUMOR_peak_16546	chr11	1064223	1064514	+	12.05967	NA	Intergenic	L1MD|LINE|L1	-10507	NM_002457	4583	Hs.315	NM_002457	HPRD:11828	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_34742	chr15	79462617	79462780	+	12.05967	NA	Intergenic	Intergenic	-39432	NR_029705	406960		NR_029705	miRBase:MI0000481	MIR184	EDICT|MIRN184|miR-184	microRNA 184	ncRNA
19-PTNLD28-TUMOR_peak_19889	chr11	72452420	72452588	+	12.05967	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	10930	NM_001040118	116985	Hs.503165	NM_015242	HPRD:09440	ARAP1	CENTD2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_68562	chr3	57935625	57935801	+	12.05967	NA	Intergenic	Intergenic	-58414	NM_001457	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_23463	chr12	26348720	26349150	+	12.05967	NA	intron (NM_005086, intron 1 of 2)	CpG	429	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_93188	chr7	73043662	73043812	+	12.05936	NA	Intergenic	Intergenic	-4867	NM_032954	51085	Hs.647055	NM_032951	HPRD:12033	MLXIPL	CHREBP|MIO|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein-like	protein-coding
19-PTNLD28-TUMOR_peak_1281	chr1	20820420	20820614	+	12.05936	NA	Intergenic	Intergenic	-7789	NM_018584	55450	Hs.731383	NM_018584	HPRD:13112	CAMK2N1	PRO1489	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_92684	chr7	56034589	56034868	+	12.05936	NA	intron (NM_001202469, intron 1 of 7)	intron (NM_001202469, intron 1 of 7)	2458	NM_001483	2631	Hs.591069	NM_001483	HPRD:04302	GBAS	NIPSNAP2	glioblastoma amplified sequence	protein-coding
19-PTNLD28-TUMOR_peak_79952	chr5	55441033	55441164	+	12.05822	NA	intron (NM_024669, intron 6 of 11)	MLT1J2|LTR|ERVL-MaLR	88088	NM_024669	79722	Hs.436214	NM_024669	HPRD:07758	ANKRD55	-	ankyrin repeat domain 55	protein-coding
19-PTNLD28-TUMOR_peak_44591	chr18	11622557	11622706	+	12.05822	NA	Intergenic	Intergenic	13074	NM_001282300	646000		NM_001282300		SLC35G4P	AMAC1L1|SLC35G4	solute carrier family 35, member G4, pseudogene	protein-coding
19-PTNLD28-TUMOR_peak_86826	chr6	33288500	33288668	+	12.05617	NA	exon (NM_001254717, exon 2 of 7)	exon (NM_001254717, exon 2 of 7)	2209	NM_001254717	1616	Hs.336916	NM_001350	HPRD:04424	DAXX	BING2|DAP6|EAP1	death-domain associated protein	protein-coding
19-PTNLD28-TUMOR_peak_54861	chr2	110874092	110874238	+	12.05602	NA	promoter-TSS (NM_005434)	promoter-TSS (NM_005434)	-22	NM_005434	7851	Hs.185055	NM_005434	HPRD:15997	MALL	BENE	mal, T-cell differentiation protein-like	protein-coding
19-PTNLD28-TUMOR_peak_34374	chr15	72490066	72490365	+	12.05602	NA	promoter-TSS (NM_001012642)	promoter-TSS (NM_001012642)	-79	NM_001012642	196996	Hs.596332	NM_001012642	HPRD:13161	GRAMD2	-	GRAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_72115	chr3	161009076	161009297	+	12.05602	NA	Intergenic	Intergenic	70087	NM_015938	51068	Hs.598836	NM_015938	HPRD:13026	NMD3	-	NMD3 ribosome export adaptor	protein-coding
19-PTNLD28-TUMOR_peak_47461	chr19	12947162	12947327	+	12.05485	NA	Intergenic	Intergenic	-1002	NM_031429	83546	Hs.21162	NM_031429	HPRD:18007	RTBDN	-	retbindin	protein-coding
19-PTNLD28-TUMOR_peak_70443	chr3	125652656	125652830	+	12.05485	NA	intron (NM_001015050, intron 1 of 5)	L2b|LINE|L2	3144	NM_001195223	200810	Hs.591299	NM_001015050	HPRD:18574	ALG1L	ALG1L1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_81619	chr5	113112658	113113278	+	12.04708	NA	Intergenic	MER51A|LTR|ERV1	263577	NM_022828	64848	Hs.231942	NM_022828	HPRD:11690	YTHDC2	CAHL	YTH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_73428	chr3	194658648	194658814	+	12.04708	NA	Intergenic	Intergenic	-156586	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92353	chr7	45614174	45614615	+	12.04708	NA	exon (NM_021116, exon 1 of 20)	exon (NM_021116, exon 1 of 20)	269	NM_021116	107	Hs.192215	NM_021116	HPRD:00053	ADCY1	AC1|DFNB44	adenylate cyclase 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_63407	chr21	37670587	37670723	+	12.04708	NA	Intergenic	Intergenic	-21832	NM_015358	23515	Hs.421150	NM_015358	HPRD:10316	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_32656	chr15	26260912	26261138	+	12.04708	NA	non-coding (NR_040082, exon 2 of 5)	non-coding (NR_040082, exon 2 of 5)	-99935	NR_038851	503519	Hs.371380	NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
19-PTNLD28-TUMOR_peak_67748	chr3	42892776	42892907	+	12.04708	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	24792	NM_004391	1582	Hs.447793	NM_004391	HPRD:03705	CYP8B1	CP8B|CYP12	cytochrome P450, family 8, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_58152	chr2	210737502	210737742	+	12.04708	NA	exon (NM_032504, exon 23 of 64)	exon (NM_032504, exon 23 of 64)	100905	NM_032504	285175	Hs.396201	NM_032504	HPRD:12809	UNC80	C2orf21|UNC-80	unc-80 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_7888	chr1	165227313	165227410	+	12.04708	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	98117	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_78826	chr5	9361979	9362100	+	12.04708	NA	intron (NM_003966, intron 3 of 22)	intron (NM_003966, intron 3 of 22)	-149406	NR_109935	101929338	Hs.675861	NR_109935	ENSG00000251370	CTD-2201E9.1	-	uncharacterized LOC101929338	ncRNA
19-PTNLD28-TUMOR_peak_39614	chr17	1378145	1378352	+	12.04708	NA	exon (NM_001080950, exon 15 of 32)	exon (NM_001080950, exon 15 of 32)	10803	NM_001080950	4641	Hs.286226	NM_033375	HPRD:09411	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
19-PTNLD28-TUMOR_peak_67389	chr3	31804406	31804778	+	12.04708	NA	intron (NM_001174060, intron 3 of 10)	intron (NM_001174060, intron 3 of 10)	58887	NR_049771	100874206	Hs.662428	NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2912	chr1	42747835	42747994	+	12.04708	NA	intron (NM_014947, intron 2 of 12)	intron (NM_014947, intron 2 of 12)	52722	NM_001198851	22887	Hs.26023	NM_014947	HPRD:13549	FOXJ3	-	forkhead box J3	protein-coding
19-PTNLD28-TUMOR_peak_94628	chr7	104392340	104392433	+	12.04708	NA	intron (NM_199000, intron 2 of 2)	HERVK-int|LTR|ERVK	52153	NR_034141	645591	Hs.658835	NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92536	chr7	50626572	50626857	+	12.04708	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	2054	NM_001242887	1644	Hs.359698	NM_000790	HPRD:00145	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
19-PTNLD28-TUMOR_peak_44309	chr18	3055912	3056365	+	12.04708	NA	Intergenic	Intergenic	-44193	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_11162	chr1	236680650	236680799	+	12.04708	NA	promoter-TSS (NM_201545)	promoter-TSS (NM_201545)	-790	NM_201545	3964	Hs.4082	NM_006499	HPRD:09356	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	lectin, galactoside-binding, soluble, 8	protein-coding
19-PTNLD28-TUMOR_peak_28290	chr13	52205400	52205517	+	12.04708	NA	intron (NM_052950, intron 1 of 11)	AluJb|SINE|Alu	46974	NM_052950	115825	Hs.46506	NM_052950	HPRD:18294	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_84266	chr5	176273604	176273776	+	12.04708	NA	intron (NM_133369, intron 1 of 14)	L2b|LINE|L2	36130	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_5900	chr1	118226265	118226459	+	12.04708	NA	Intergenic	Intergenic	77758	NM_017709	54855	Hs.356216	NM_017709	HPRD:13312	FAM46C	-	family with sequence similarity 46, member C	protein-coding
19-PTNLD28-TUMOR_peak_21991	chr11	126873237	126873389	+	12.04708	NA	non-coding (NR_040078, exon 1 of 3)	non-coding (NR_040078, exon 1 of 3)	508	NR_040078	283165	Hs.730461	NM_173579	HPRD:08274	KIRREL3-AS3	NCRNA00288|PRR10	KIRREL3 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_107720	chrX	19195995	19196141	+	12.04708	NA	Intergenic	Intergenic	-55313	NM_001184837	10149	Hs.146978	NM_005756	HPRD:04040	GPR64	EDDM6|HE6|TM7LN2	G protein-coupled receptor 64	protein-coding
19-PTNLD28-TUMOR_peak_22750	chr12	6481721	6481959	+	12.04682	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	2550	NM_001159576	6337	Hs.591047	NM_001038	HPRD:02575	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel, non-voltage-gated 1 alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_90318	chr6	159271535	159271698	+	12.04580	NA	intron (NR_028496, intron 2 of 2)	intron (NR_028496, intron 2 of 2)	7048	NR_028496	202459	Hs.487035	NM_145303	HPRD:14130	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_29481	chr14	23452576	23452739	+	12.04347	NA	promoter-TSS (NM_001289097)	promoter-TSS (NM_001289097)	-806	NM_032876	84962	Hs.655832	NM_032876	HPRD:16426	AJUBA	JUB	ajuba LIM protein	protein-coding
19-PTNLD28-TUMOR_peak_14482	chr10	79633659	79634006	+	12.04127	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	52516	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_86121	chr6	26253589	26253694	+	12.04127	NA	Intergenic	Intergenic	1762	NM_003524	8345	Hs.247815	NM_003524	HPRD:11902	HIST1H2BH	H2B/j|H2BFJ	histone cluster 1, H2bh	protein-coding
19-PTNLD28-TUMOR_peak_4573	chr1	85065276	85065404	+	12.04116	NA	intron (NR_125761, intron 2 of 2)	intron (NR_125761, intron 2 of 2)	21374	NR_125761	103695366	Hs.576097	NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
19-PTNLD28-TUMOR_peak_31743	chr14	92979656	92979911	+	12.04116	NA	promoter-TSS (NM_024832)	promoter-TSS (NM_024832)	-342	NM_024832	79890	Hs.326822	NM_024832	HPRD:11494	RIN3	-	Ras and Rab interactor 3	protein-coding
19-PTNLD28-TUMOR_peak_100612	chr8	125633301	125633508	+	12.04116	NA	intron (NM_001282974, intron 3 of 13)	intron (NM_001282974, intron 3 of 13)	82061	NM_001278645	4715	Hs.15977	NM_005005	HPRD:03264	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa	protein-coding
19-PTNLD28-TUMOR_peak_27555	chr13	27054692	27054851	+	12.04116	NA	Intergenic	Intergenic	-77069	NM_001291965	10810	Hs.618732	NM_006646	HPRD:05458	WASF3	Brush-1|SCAR3|WAVE3	WAS protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_15769	chr10	116161000	116161180	+	12.04116	NA	intron (NM_001001936, intron 1 of 18)	intron (NM_001001936, intron 1 of 18)	3447	NM_001001936	84632	Hs.501106	NM_032550	HPRD:13902	AFAP1L2	KIAA1914|XB130	actin filament associated protein 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_90723	chr7	229296	229434	+	12.04116	NA	intron (NM_020223, intron 3 of 9)	intron (NM_020223, intron 3 of 9)	36396	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	family with sequence similarity 20, member C	protein-coding
19-PTNLD28-TUMOR_peak_73955	chr4	3233292	3233432	+	12.04116	NA	intron (NM_002111, intron 60 of 66)	intron (NM_002111, intron 60 of 66)	-17405	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38751	chr16	75299845	75300117	+	12.03977	NA	promoter-TSS (NM_001170718)	promoter-TSS (NM_001170718)	-76	NM_001170718	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_77458	chr4	146858332	146858672	+	12.03977	NA	intron (NM_178835, intron 1 of 14)	CpG	1105	NM_178835	152485	Hs.633543	NM_178835	HPRD:14095	ZNF827	-	zinc finger protein 827	protein-coding
19-PTNLD28-TUMOR_peak_936	chr1	14627930	14628138	+	12.03977	NA	Intergenic	Intergenic	-297179	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_76431	chr4	103360389	103360777	+	12.03290	NA	Intergenic	Intergenic	-61903	NM_003998	4790	Hs.618430	NM_003998	HPRD:01238	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
19-PTNLD28-TUMOR_peak_54470	chr2	100720818	100720945	+	12.03290	NA	exon (NM_002285, exon 3 of 24)	exon (NM_002285, exon 3 of 24)	1164	NM_001025108	3899	Hs.444414	NM_002285	HPRD:03272	AFF3	LAF4|MLLT2-like	AF4/FMR2 family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_72352	chr3	171805548	171805978	+	12.03290	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	47419	NM_001135095	64778	Hs.744888	NM_022763	HPRD:10943	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_65992	chr22	46663615	46663903	+	12.03290	NA	promoter-TSS (NM_017931)	promoter-TSS (NM_017931)	-102	NM_017931	55020	Hs.435832	NM_017931	HPRD:07943	TTC38	-	tetratricopeptide repeat domain 38	protein-coding
19-PTNLD28-TUMOR_peak_90250	chr6	158254684	158255018	+	12.03290	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	10648	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_53581	chr2	74804011	74804208	+	12.03290	NA	intron (NM_138804, intron 5 of 10)	intron (NM_138804, intron 5 of 10)	22597	NM_001381	1796	Hs.103854	NM_001381	HPRD:04228	DOK1	P62DOK	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	protein-coding
19-PTNLD28-TUMOR_peak_46506	chr19	703723	703856	+	12.03290	NA	Intergenic	Intergenic	-5164	NM_001040134	5064	Hs.631841	NM_002579	HPRD:09734	PALM	-	paralemmin	protein-coding
19-PTNLD28-TUMOR_peak_98056	chr8	30770430	30770608	+	12.03290	NA	Intergenic	Intergenic	-63986	NM_031271	56154	Hs.458316	NM_031271	HPRD:09313	TEX15	CT42	testis expressed 15	protein-coding
19-PTNLD28-TUMOR_peak_91213	chr7	6922028	6922250	+	12.03290	NA	Intergenic	Intergenic	-56213	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_100402	chr8	121457601	121457865	+	12.03290	NA	promoter-TSS (NM_014078)	promoter-TSS (NM_014078)	-86	NM_014078	28998	Hs.333823	NM_014078	HPRD:14740	MRPL13	L13|L13A|L13mt|RPL13|RPML13	mitochondrial ribosomal protein L13	protein-coding
19-PTNLD28-TUMOR_peak_77896	chr4	164087967	164088163	+	12.03290	NA	promoter-TSS (NM_001128931)	promoter-TSS (NM_001128931)	8	NM_138386	92345	Hs.129095	NM_138386	HPRD:10054	NAF1	-	nuclear assembly factor 1 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_72702	chr3	183199476	183199631	+	12.03290	NA	Intergenic	MIR|SINE|MIR	34114	NR_038301	100505687	Hs.551751	NR_038301	ENSG00000240024	LINC00888	-	long intergenic non-protein coding RNA 888	ncRNA
19-PTNLD28-TUMOR_peak_92405	chr7	46890903	46891078	+	12.03290	NA	Intergenic	Intergenic	730752	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_82156	chr5	132567960	132568085	+	12.03290	NA	intron (NM_015082, intron 8 of 15)	intron (NM_015082, intron 8 of 15)	180360	NM_002154	3308	Hs.90093	NM_002154		HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock 70kDa protein 4	protein-coding
19-PTNLD28-TUMOR_peak_36865	chr16	23765923	23766152	+	12.03290	NA	promoter-TSS (NM_022097)	promoter-TSS (NM_022097)	89	NM_022097	63928	Hs.178589	NM_022097	HPRD:14259	CHP2	-	calcineurin-like EF-hand protein 2	protein-coding
19-PTNLD28-TUMOR_peak_69693	chr3	110625184	110625710	+	12.03290	NA	Intergenic	Intergenic	163359	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29191	chr13	114502757	114502979	+	12.03290	NA	intron (NM_182614, intron 5 of 8)	intron (NM_182614, intron 5 of 8)	-15715	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78550	chr5	53827	54257	+	12.03290	NA	Intergenic	CpG	-86331	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 4B	protein-coding
19-PTNLD28-TUMOR_peak_46669	chr19	2524949	2525337	+	12.03290	NA	intron (NM_052847, intron 3 of 4)	CpG	49020	NM_015675	4616	Hs.110571	NM_015675	HPRD:05382	GADD45B	GADD45BETA|MYD118	growth arrest and DNA-damage-inducible, beta	protein-coding
19-PTNLD28-TUMOR_peak_97676	chr8	23285404	23285528	+	12.03290	NA	Intergenic	Intergenic	-23744	NM_002318	4017	Hs.626637	NM_002318	HPRD:09446	LOXL2	LOR2|WS9-14	lysyl oxidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_67394	chr3	31989174	31989558	+	12.03290	NA	intron (NM_017784, intron 1 of 11)	LTR16A1|LTR|ERVL	-33900	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
19-PTNLD28-TUMOR_peak_74321	chr4	8189976	8190102	+	12.02712	NA	Intergenic	L2b|LINE|L2	-11021	NM_018986	54436	Hs.479116	NM_018986	HPRD:11556	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_43084	chr17	65820955	65821139	+	12.02575	NA	promoter-TSS (NM_004459)	promoter-TSS (NM_004459)	-733	NM_004459	2186	Hs.444200	NM_004459	HPRD:03490	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_1998	chr1	31271101	31271272	+	12.01806	NA	Intergenic	Intergenic	-40503	NM_006762	7805	Hs.371021	NM_006762	HPRD:03280	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
19-PTNLD28-TUMOR_peak_57542	chr2	192623296	192623627	+	12.01806	NA	Intergenic	Intergenic	80599	NR_045623	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27341	chr13	20368670	20369051	+	12.01806	NA	Intergenic	FRAM|SINE|Alu	-11701	NM_001042414	55269	Hs.213198	NM_001042414		PSPC1	PSP1	paraspeckle component 1	protein-coding
19-PTNLD28-TUMOR_peak_58670	chr2	227340468	227340643	+	12.01806	NA	Intergenic	Intergenic	182954	NR_049887	100847053		NR_049887	miRBase:MI0019309	MIR5702	-	microRNA 5702	ncRNA
19-PTNLD28-TUMOR_peak_64860	chr22	26717737	26717879	+	12.01800	NA	intron (NM_021115, intron 9 of 16)	intron (NM_021115, intron 9 of 16)	-107472	NM_020437	57168	Hs.567547	NM_020437	HPRD:14255	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_95163	chr7	128549981	128550292	+	12.01800	NA	intron (NM_001135914, intron 2 of 36)	intron (NM_001135914, intron 2 of 36)	637	NM_001135914	375616	Hs.371746	NM_199349		KCP	CRIM2|KCP1|NET67	kielin/chordin-like protein	protein-coding
19-PTNLD28-TUMOR_peak_10673	chr1	228871881	228872098	+	12.01800	NA	intron (NM_021205, intron 1 of 2)	CpG	1165	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_58953	chr2	235163876	235164039	+	12.01800	NA	Intergenic	Intergenic	204611	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_86493	chr6	30658496	30658688	+	12.01536	NA	promoter-TSS (NR_073072)	promoter-TSS (NR_073072)	-92	NR_073072	11270	Hs.519993	NM_007243	HPRD:10120	NRM	NRM29	nurim (nuclear envelope membrane protein)	protein-coding
19-PTNLD28-TUMOR_peak_47463	chr19	12951523	12951753	+	12.01148	NA	intron (NM_014975, intron 2 of 25)	intron (NM_014975, intron 2 of 25)	2379	NM_014975	22983	Hs.227489	NM_014975	HPRD:17469	MAST1	SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_37168	chr16	29831653	29831807	+	12.00983	NA	promoter-TSS (NM_017458)	promoter-TSS (NM_017458)	15	NM_005115	9961	Hs.632177	NM_005115	HPRD:05475	MVP	LRP|VAULT1	major vault protein	protein-coding
19-PTNLD28-TUMOR_peak_7272	chr1	156085729	156085877	+	12.00690	NA	intron (NM_001282626, intron 1 of 11)	intron (NM_001282626, intron 1 of 11)	1342	NM_001282626	4000	Hs.594444	NM_005572	HPRD:01035	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1	lamin A/C	protein-coding
19-PTNLD28-TUMOR_peak_94546	chr7	102260490	102260605	+	12.00184	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	-3342	NM_006989	10156	Hs.530089	NM_006989	HPRD:12135	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
19-PTNLD28-TUMOR_peak_71910	chr3	156393835	156394017	+	11.99969	NA	promoter-TSS (NM_001184718)	promoter-TSS (NM_001184718)	-424	NR_027954	100287227	Hs.12813	NR_027954		TIPARP-AS1	-	TIPARP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49883	chr19	50362698	50362877	+	11.99872	NA	promoter-TSS (NR_110730)	promoter-TSS (NR_110730)	-241	NR_110730	101928378	Hs.710295	NR_110730		LOC101928378	-	uncharacterized LOC101928378	ncRNA
19-PTNLD28-TUMOR_peak_71094	chr3	136537108	136537488	+	11.99872	NA	promoter-TSS (NM_025246)	promoter-TSS (NM_025246)	-563	NM_001097599	80723	Hs.477692	NM_025246	HPRD:15532	SLC35G2	TMEM22	solute carrier family 35, member G2	protein-coding
19-PTNLD28-TUMOR_peak_32001	chr14	100001925	100002157	+	11.99778	NA	intron (NM_001144995, intron 2 of 5)	intron (NM_001144995, intron 2 of 5)	54302	NM_001099402	8812	Hs.510409	NM_003858		CCNK	CPR4	cyclin K	protein-coding
19-PTNLD28-TUMOR_peak_5324	chr1	109236121	109236266	+	11.99701	NA	intron (NM_018061, intron 1 of 5)	intron (NM_018061, intron 1 of 5)	1258	NR_037185	55119	Hs.342307	NM_018061	HPRD:07664	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
19-PTNLD28-TUMOR_peak_19068	chr11	63375824	63376171	+	11.99588	NA	intron (NM_001128203, intron 2 of 4)	intron (NM_001128203, intron 2 of 4)	5912	NM_007069	11145	Hs.502775	NM_007069	HPRD:13671	PLA2G16	AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3	phospholipase A2, group XVI	protein-coding
19-PTNLD28-TUMOR_peak_22008	chr11	127730016	127730194	+	11.99588	NA	Intergenic	Intergenic	589140	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
19-PTNLD28-TUMOR_peak_22945	chr12	8556627	8556939	+	11.99588	NA	Intergenic	LTR12C|LTR|ERV1	-13435	NR_024420	389634	Hs.434403	NM_001012988	HPRD:18395	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
19-PTNLD28-TUMOR_peak_70237	chr3	123386601	123386978	+	11.99588	NA	intron (NM_053025, intron 20 of 33)	intron (NM_053025, intron 20 of 33)	-21702	NR_046629	100873940	Hs.667316	NR_046629		MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_961	chr1	15280642	15280977	+	11.99588	NA	intron (NM_001017999, intron 1 of 7)	intron (NM_001017999, intron 1 of 7)	8394	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_89571	chr6	135591869	135592445	+	11.99588	NA	Intergenic	Intergenic	89704	NM_001130172	4602	Hs.606320	NM_005375	HPRD:01810	MYB	Cmyb|c-myb|c-myb_CDS|efg	v-myb avian myeloblastosis viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_96495	chr7	152622459	152622960	+	11.99588	NA	Intergenic	CpG	165875	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_20944	chr11	106023680	106023820	+	11.99588	NA	Intergenic	L1MEc|LINE|L1	-75285	NM_198439	143879	Hs.101949	NM_152433	HPRD:10005	KBTBD3	BKLHD3	kelch repeat and BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_46402	chr18	77327817	77328027	+	11.99588	NA	Intergenic	Intergenic	-111879	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_91039	chr7	4889248	4889415	+	11.99588	NA	intron (NM_018059, intron 2 of 14)	Kanga1d|DNA|TcMar-Tc2	12294	NM_020144	56903	Hs.487409	NM_020144	HPRD:08467	PAPOLB	PAPT|TPAP	poly(A) polymerase beta (testis specific)	protein-coding
19-PTNLD28-TUMOR_peak_27060	chr12	126168370	126168599	+	11.99588	NA	Intergenic	CpG	61486	NM_001286219	114795	Hs.524838	NM_052907		TMEM132B	-	transmembrane protein 132B	protein-coding
19-PTNLD28-TUMOR_peak_34458	chr15	74331853	74332032	+	11.99532	NA	intron (NM_033249, intron 6 of 6)	MER5B|DNA|hAT-Charlie	42949	NM_001038640	342096	Hs.546408	NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_14356	chr10	75690855	75691002	+	11.99532	NA	Intergenic	LTR13A|LTR|ERVK	-8393	NM_001001791	414236	Hs.585453	NM_001001791	HPRD:16580	C10orf55	bA417O11.3	chromosome 10 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_41399	chr17	38771982	38772123	+	11.99532	NA	Intergenic	Intergenic	32051	NM_003079	6605	Hs.743978	NM_003079	HPRD:04382	SMARCE1	BAF57	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
19-PTNLD28-TUMOR_peak_59075	chr2	238213502	238213740	+	11.99532	NA	Intergenic	ERVL-E-int|LTR|ERVL	109229	NM_057167	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_102917	chr9	36091449	36091620	+	11.99459	NA	intron (NM_021111, intron 10 of 20)	intron (NM_021111, intron 10 of 20)	-44999	NR_104641	152007	Hs.493819	NM_022343	HPRD:06187	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
19-PTNLD28-TUMOR_peak_1330	chr1	21695088	21695206	+	11.99459	NA	Intergenic	Intergenic	-23113	NM_001113348	1889	Hs.195080	NM_001397	HPRD:02690	ECE1	ECE	endothelin converting enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_91975	chr7	34394634	34394818	+	11.99459	NA	intron (NR_033665, intron 3 of 3)	intron (NR_033665, intron 3 of 3)	-303125	NM_001300934	387129	Hs.652373	NM_207172	HPRD:10547	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_12368	chr10	22913388	22913547	+	11.99459	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	90036	NM_005028	5305	Hs.57079	NM_005028	HPRD:11931	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_10011	chr1	213123768	213123937	+	11.99459	NA	promoter-TSS (NM_001136474)	promoter-TSS (NM_001136474)	-10	NM_001136474	79805	Hs.96885	NM_024749	HPRD:08574	VASH2	-	vasohibin 2	protein-coding
19-PTNLD28-TUMOR_peak_88108	chr6	56246742	56247035	+	11.99459	NA	intron (NR_046940, intron 2 of 5)	intron (NR_046940, intron 2 of 5)	-134510	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_15570	chr10	111694870	111695414	+	11.99459	NA	Intergenic	Intergenic	-11831	NM_020383	7511	Hs.390623	NM_020383	HPRD:03899	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_100677	chr8	126422913	126423057	+	11.99459	NA	Intergenic	Intergenic	-19578	NM_025195	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86155	chr6	26502508	26502624	+	11.99459	NA	intron (NM_001732, intron 2 of 6)	MER83|LTR|ERV1	1071	NM_001732	696	Hs.153058	NM_001732	HPRD:03365	BTN1A1	BT|BTN|BTN1	butyrophilin, subfamily 1, member A1	protein-coding
19-PTNLD28-TUMOR_peak_10761	chr1	230023227	230023459	+	11.99459	NA	Intergenic	Intergenic	-170193	NM_001291866	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_85234	chr6	9173765	9173951	+	11.99459	NA	Intergenic	LTR18B|LTR|ERVL	521416	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_8161	chr1	171410531	171410649	+	11.99459	NA	Intergenic	Intergenic	-44076	NM_015172	23215	Hs.494614	NM_015172	HPRD:16539	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
19-PTNLD28-TUMOR_peak_66023	chr22	47057420	47057678	+	11.99459	NA	intron (NM_015124, intron 4 of 17)	intron (NM_015124, intron 4 of 17)	34891	NM_015124	23151	Hs.475150	NM_015124	HPRD:11107	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_72680	chr3	182965081	182965201	+	11.99459	NA	intron (NM_015078, intron 15 of 29)	intron (NM_015078, intron 15 of 29)	-5891	NM_032047	84002	Hs.718506	NM_032047	HPRD:12511	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_4490	chr1	80163898	80164019	+	11.99459	NA	Intergenic	HERVH-int|LTR|ERV1	-691463	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	EGF, latrophilin and seven transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53048	chr2	64329993	64330280	+	11.99459	NA	intron (NM_020651, intron 3 of 6)	AluJb|SINE|Alu	41469	NM_020651	57162	Hs.7886	NM_020651	HPRD:17834	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_32528	chr15	22462158	22462481	+	11.99459	NA	Intergenic	Intergenic	48857	NR_028067	390539	Hs.666555	NR_028067	ENSG00000259435	OR4N3P	OR15-2	olfactory receptor, family 4, subfamily N, member 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105734	chr9	120249882	120250038	+	11.99459	NA	Intergenic	Intergenic	-72643	NM_014010	23245	Hs.601562	NM_014010	HPRD:12498	ASTN2	bA67K19.1	astrotactin 2	protein-coding
19-PTNLD28-TUMOR_peak_13650	chr10	53654650	53654795	+	11.99459	NA	intron (NM_006258, intron 4 of 17)	intron (NM_006258, intron 4 of 17)	-195367	NM_015235	23283	Hs.591358	NM_015235	HPRD:09900	CSTF2T	CstF-64T	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	protein-coding
19-PTNLD28-TUMOR_peak_46284	chr18	73347129	73347343	+	11.99364	NA	Intergenic	Intergenic	-207647	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
19-PTNLD28-TUMOR_peak_56917	chr2	171672291	171672425	+	11.99364	NA	promoter-TSS (NM_000817)	promoter-TSS (NM_000817)	-842	NM_000817	2571	Hs.420036	NM_000817	HPRD:12011	GAD1	CPSQ1|GAD|SCP	glutamate decarboxylase 1 (brain, 67kDa)	protein-coding
19-PTNLD28-TUMOR_peak_57170	chr2	178104758	178104939	+	11.98337	NA	intron (NM_006164, intron 1 of 4)	intron (NM_006164, intron 1 of 4)	15890	NR_036075	100422824		NR_036075		MIR3128	-	microRNA 3128	ncRNA
19-PTNLD28-TUMOR_peak_95179	chr7	128828230	128828588	+	11.97988	NA	promoter-TSS (NM_005631)	promoter-TSS (NM_005631)	-304	NM_005631	6608	Hs.437846	NM_005631	HPRD:03294	SMO	FZD11|Gx|SMOH	smoothened, frizzled class receptor	protein-coding
19-PTNLD28-TUMOR_peak_50444	chr19	56643739	56643893	+	11.97988	NA	Intergenic	MER90|LTR|ERV1	-8719	NM_001253792	55311	Hs.24545	NM_018337	HPRD:08488	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
19-PTNLD28-TUMOR_peak_66715	chr3	13152160	13152571	+	11.97988	NA	Intergenic	Intergenic	-37748	NM_001134382	9922	Hs.475506	NM_014869	HPRD:11052	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
19-PTNLD28-TUMOR_peak_10268	chr1	223314541	223314800	+	11.97746	NA	intron (NM_003268, intron 2 of 5)	intron (NM_003268, intron 2 of 5)	1954	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_1013	chr1	16107177	16107571	+	11.97652	NA	intron (NM_017556, intron 8 of 8)	intron (NM_017556, intron 8 of 8)	15915	NM_001024216	54751	Hs.530101	NM_017556	HPRD:09669	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50201	chr19	53863925	53864026	+	11.97652	NA	Intergenic	LTR13|LTR|ERVK	-4993	NR_003699	170958	Hs.352638	NR_003699	ENSG00000203326	ZNF525	-	zinc finger protein 525	pseudo
19-PTNLD28-TUMOR_peak_63890	chr21	45195657	45196186	+	11.97652	NA	intron (NM_000100, intron 1 of 2)	CpG	335	NM_000100	1476	Hs.695	NM_000100		CSTB	CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B (stefin B)	protein-coding
19-PTNLD28-TUMOR_peak_47899	chr19	17485068	17485242	+	11.97652	NA	intron (NM_031310, intron 1 of 5)	AluY|SINE|Alu	2982	NM_031310	83483	Hs.107125	NM_031310	HPRD:09626	PLVAP	FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
19-PTNLD28-TUMOR_peak_100554	chr8	124730834	124731179	+	11.97652	NA	intron (NM_004306, intron 1 of 10)	intron (NM_004306, intron 1 of 10)	18641	NM_001003954	312	Hs.181107	NM_004306	HPRD:03984	ANXA13	ANX13|ISA	annexin A13	protein-coding
19-PTNLD28-TUMOR_peak_34539	chr15	75357987	75358174	+	11.97652	NA	Intergenic	HERVP71A-int|LTR|ERV1	22470	NM_001301105	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_22003	chr11	127521813	127521976	+	11.97652	NA	Intergenic	Intergenic	380929	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
19-PTNLD28-TUMOR_peak_23840	chr12	42876714	42876962	+	11.97652	NA	intron (NM_153026, intron 1 of 7)	CpG	578	NM_001144881	144165	Hs.524348	NM_153026	HPRD:16341	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_87573	chr6	43276056	43276313	+	11.97652	NA	intron (NM_206922, intron 1 of 7)	intron (NM_206922, intron 1 of 7)	346	NM_206922	401262	Hs.653165	NM_206922	HPRD:16755	CRIP3	TLP|TLP-A|bA480N24.2	cysteine-rich protein 3	protein-coding
19-PTNLD28-TUMOR_peak_15363	chr10	104404725	104404897	+	11.97562	NA	exon (NM_030912, exon 1 of 6)	exon (NM_030912, exon 1 of 6)	559	NM_030912	81603	Hs.336810	NM_030912	HPRD:06934	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
19-PTNLD28-TUMOR_peak_15910	chr10	120604719	120604942	+	11.97558	NA	Intergenic	Intergenic	-90072	NM_153810	143384	Hs.420024	NM_153810	HPRD:12576	CACUL1	C10orf46|CAC1	CDK2-associated, cullin domain 1	protein-coding
19-PTNLD28-TUMOR_peak_58800	chr2	232092144	232092282	+	11.97558	NA	intron (NM_025139, intron 7 of 20)	intron (NM_025139, intron 7 of 20)	21300	NM_001271466	80210	Hs.471610	NM_025139	HPRD:07778	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
19-PTNLD28-TUMOR_peak_19336	chr11	65679238	65679485	+	11.97558	NA	Intergenic	Intergenic	7170	NM_031450	83638	Hs.433573	NM_031450	HPRD:12553	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
19-PTNLD28-TUMOR_peak_41252	chr17	36833365	36833598	+	11.97558	NA	Intergenic	Intergenic	-2294	NM_001130677	100170841	Hs.445574	NM_001130677	ENSG00000179294	C17orf96	PRR28	chromosome 17 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_33031	chr15	35014208	35014416	+	11.97558	NA	Intergenic	Intergenic	32470	NM_020660	57369	Hs.283816	NM_020660		GJD2	CX36|GJA9	gap junction protein, delta 2, 36kDa	protein-coding
19-PTNLD28-TUMOR_peak_81107	chr5	90225215	90225363	+	11.97558	NA	intron (NR_003149, intron 83 of 89)	L1PA2|LINE|L1	370672	NR_003149	84059	Hs.591777	NM_032119	HPRD:09111	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
19-PTNLD28-TUMOR_peak_100355	chr8	120447233	120447336	+	11.97558	NA	Intergenic	Intergenic	18732	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_64888	chr22	27173489	27173687	+	11.97558	NA	intron (NR_110543, intron 4 of 5)	intron (NR_110543, intron 4 of 5)	104782	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42313	chr17	49210514	49210709	+	11.97558	NA	Intergenic	Intergenic	-12385	NM_003971	9043	Hs.463439	NM_003971	HPRD:10398	SPAG9	CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
19-PTNLD28-TUMOR_peak_77059	chr4	129629231	129629412	+	11.97558	NA	Intergenic	L3|LINE|CR1	-101457	NM_199320	79960	Hs.12420	NM_024900	HPRD:10151	JADE1	PHF17	jade family PHD finger 1	protein-coding
19-PTNLD28-TUMOR_peak_7781	chr1	162824121	162824274	+	11.97558	NA	3' UTR (NM_178550, exon 4 of 4)	3' UTR (NM_178550, exon 4 of 4)	14408	NM_178550	339512	Hs.407631	NM_178550	HPRD:14661	C1orf110	-	chromosome 1 open reading frame 110	protein-coding
19-PTNLD28-TUMOR_peak_26825	chr12	122675562	122675713	+	11.97558	NA	intron (NM_001098519, intron 5 of 11)	intron (NM_001098519, intron 5 of 11)	7970	NM_001098519	254050	Hs.374856	NM_152759	HPRD:14601	LRRC43	-	leucine rich repeat containing 43	protein-coding
19-PTNLD28-TUMOR_peak_20586	chr11	93063581	93064117	+	11.97558	NA	promoter-TSS (NM_181645)	promoter-TSS (NM_181645)	-34	NM_181645	159989	Hs.436625	NM_181645	HPRD:08689	CCDC67	-	coiled-coil domain containing 67	protein-coding
19-PTNLD28-TUMOR_peak_1917	chr1	29586207	29586564	+	11.97558	NA	exon (NM_005704, exon 6 of 31)	exon (NM_005704, exon 6 of 31)	23357	NM_001195001	10076	Hs.19718	NM_005704	HPRD:03908	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase, receptor type, U	protein-coding
19-PTNLD28-TUMOR_peak_39214	chr16	85693489	85693658	+	11.97558	NA	intron (NM_001134473, intron 7 of 14)	intron (NM_001134473, intron 7 of 14)	29015	NM_016095	51659	Hs.433180	NM_016095		GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_106661	chr9	137561981	137562298	+	11.97558	NA	intron (NM_001278074, intron 1 of 65)	L1ME4a|LINE|L1	28488	NM_000093	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_109391	chrX	126256034	126256469	+	11.97558	NA	Intergenic	L1PA2|LINE|L1	302504	NM_001122716	100130613	Hs.130370	NM_001122716	ENSG00000183631	PRR32	CXorf64	proline rich 32	protein-coding
19-PTNLD28-TUMOR_peak_31944	chr14	98034882	98035007	+	11.97558	NA	intron (NR_110166, intron 4 of 4)	intron (NR_110166, intron 4 of 4)	109791	NR_110166	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_87936	chr6	52268509	52268757	+	11.97558	NA	exon (NM_133367, exon 2 of 2)	exon (NM_133367, exon 2 of 2)	-16361	NM_018100	114327	Hs.403171	NM_018100	HPRD:10583	EFHC1	EJM1|dJ304B14.2	EF-hand domain (C-terminal) containing 1	protein-coding
19-PTNLD28-TUMOR_peak_37103	chr16	29180873	29181136	+	11.97558	NA	Intergenic	Intergenic	94841	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_102830	chr9	35042479	35042671	+	11.97558	NA	intron (NM_001287391, intron 1 of 1)	intron (NM_001287391, intron 1 of 1)	106	NM_001287391	138724	Hs.148250	NM_203299	HPRD:14616	C9orf131	-	chromosome 9 open reading frame 131	protein-coding
19-PTNLD28-TUMOR_peak_109576	chrX	135067450	135067856	+	11.97558	NA	promoter-TSS (NM_001042537)	promoter-TSS (NM_001042537)	67	NM_006359	10479	Hs.62185	NM_006359	HPRD:02208	SLC9A6	MRSA|NHE6	solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6	protein-coding
19-PTNLD28-TUMOR_peak_6382	chr1	146244577	146244724	+	11.97272	NA	intron (NR_104217, intron 2 of 17).2	intron (NR_104217, intron 2 of 17).2	-129207	NM_001278141	149013	Hs.666981	NM_001278141	ENSG00000186275	NBPF12	COAS1|KIAA1245	neuroblastoma breakpoint family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_73765	chr4	699729	700192	+	11.96917	NA	intron (NM_006315, intron 1 of 10)	intron (NM_006315, intron 1 of 10)	387	NM_006315	10336	Hs.144309	NM_006315	HPRD:11515	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_73750	chr4	657336	657603	+	11.96917	NA	intron (NM_000283, intron 15 of 21)	CpG	10503	NM_001145292	5158	Hs.623810	NM_000283	HPRD:01571	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B, cGMP-specific, rod, beta	protein-coding
19-PTNLD28-TUMOR_peak_40080	chr17	8151165	8151348	+	11.96323	NA	intron (NR_046431, intron 1 of 21)	CpG	157	NR_046431	80169	Hs.156055	NM_025099		CTC1	AAF-132|AAF132|C17orf68|CRMCC|tmp494178	CTS telomere maintenance complex component 1	protein-coding
19-PTNLD28-TUMOR_peak_18706	chr11	58393677	58393785	+	11.96323	NA	TTS (NM_000614)	TTS (NM_000614)	3585	NM_000614	1270	Hs.524920	NM_000614	HPRD:00347	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_88758	chr6	90893818	90893952	+	11.96323	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	112742	NM_021813	60468	Hs.269764	NM_021813	HPRD:12012	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_16611	chr11	1850351	1850488	+	11.96323	NA	Intergenic	Intergenic	-5121	NM_001290334	90019	Hs.161031	NM_138567	HPRD:09655	SYT8	-	synaptotagmin VIII	protein-coding
19-PTNLD28-TUMOR_peak_68089	chr3	49055113	49055328	+	11.96186	NA	exon (NM_018114, exon 3 of 12)	exon (NM_018114, exon 3 of 12)	821	NM_001009996	55152	Hs.654815	NM_018114	HPRD:08549	DALRD3	-	DALR anticodon binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_52705	chr2	48709510	48709723	+	11.96121	NA	intron (NR_024188, intron 13 of 21)	LTR47B|LTR|ERVL	41708	NR_024188	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_27246	chr12	132314995	132315206	+	11.96121	NA	intron (NM_016155, intron 1 of 9)	CpG	2159	NM_016155	4326	Hs.709245	NM_016155	HPRD:03793	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_55084	chr2	113991863	113992024	+	11.96121	NA	intron (NM_013953, intron 7 of 9)	intron (NM_013953, intron 7 of 9)	-1161	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42560	chr17	56160925	56161062	+	11.96121	NA	promoter-TSS (NR_110809)	promoter-TSS (NR_110809)	213	NM_080677	140735	Hs.720595	NM_080677		DYNLL2	DNCL1B|Dlc2|RSPH22	dynein, light chain, LC8-type 2	protein-coding
19-PTNLD28-TUMOR_peak_73124	chr3	189073665	189074016	+	11.96121	NA	Intergenic	Intergenic	-115457	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_49926	chr19	50631780	50631943	+	11.95653	NA	promoter-TSS (NR_024228)	promoter-TSS (NR_024228)	-82	NR_024214	100169951	Hs.723094	NR_024214		SNAR-A3	-	small ILF3/NF90-associated RNA A3	snRNA
19-PTNLD28-TUMOR_peak_66966	chr3	16416259	16416492	+	11.95629	NA	intron (NM_015150, intron 5 of 9)	intron (NM_015150, intron 5 of 9)	109708	NM_138381	92106	Hs.655449	NM_138381	HPRD:14446	OXNAD1	-	oxidoreductase NAD-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_7317	chr1	156475184	156475396	+	11.95579	NA	Intergenic	CpG	-4656	NM_005920	4209	Hs.314327	NM_005920	HPRD:02810	MEF2D	-	myocyte enhancer factor 2D	protein-coding
19-PTNLD28-TUMOR_peak_84306	chr5	176830815	176831120	+	11.95534	NA	exon (NM_000505, exon 10 of 14)	exon (NM_000505, exon 10 of 14)	-3330	NM_001029886	345456	Hs.130196	NM_001029886	ENSG00000196570	PFN3	-	profilin 3	protein-coding
19-PTNLD28-TUMOR_peak_78648	chr5	1167914	1168064	+	11.95534	NA	Intergenic	Intergenic	10731	NR_109911	101928857	Hs.593732	NR_109911	ENSG00000249201	CTD-3080P12.3	-	uncharacterized LOC101928857	ncRNA
19-PTNLD28-TUMOR_peak_38532	chr16	70221928	70222428	+	11.95534	NA	Intergenic	CpG	14250	NM_173619	283971	Hs.556045	NM_173619	HPRD:14587	CLEC18C	MRCL|MRCL3	C-type lectin domain family 18, member C	protein-coding
19-PTNLD28-TUMOR_peak_74787	chr4	25161510	25162088	+	11.94952	NA	promoter-TSS (NR_037934)	promoter-TSS (NR_037934)	405	NM_016955	51091	Hs.253305	NM_016955	HPRD:11561	SEPSECS	LP|PCH2D|SLA|SLA/LP	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding
19-PTNLD28-TUMOR_peak_79223	chr5	22164794	22164983	+	11.94952	NA	intron (NM_004061, intron 4 of 14)	LTR17|LTR|ERV1	22427	NR_003921	5369	Hs.247975	NM_031887	HPRD:15940	PMCHL1	-	pro-melanin-concentrating hormone-like 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_94686	chr7	105449797	105449965	+	11.94952	NA	intron (NM_152749, intron 2 of 3)	L1MB1|LINE|L1	67150	NM_020725	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_39095	chr16	84565413	84565623	+	11.94931	NA	Intergenic	Intergenic	-27230	NM_020947	57707	Hs.288274	NM_020947		TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69923	chr3	114342966	114343115	+	11.94908	NA	promoter-TSS (NM_001164347)	promoter-TSS (NM_001164347)	13	NM_001164347	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_54506	chr2	101402240	101402357	+	11.94908	NA	Intergenic	Intergenic	-34315	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_5857	chr1	117602067	117602210	+	11.94769	NA	promoter-TSS (NM_003594)	promoter-TSS (NM_003594)	-26	NR_110786	101929099	Hs.559118	NR_110786	ENSG00000236137	LOC101929099	-	uncharacterized LOC101929099	ncRNA
19-PTNLD28-TUMOR_peak_91719	chr7	26438373	26438831	+	11.94517	NA	Intergenic	CpG	-4506	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
19-PTNLD28-TUMOR_peak_93745	chr7	84303674	84304061	+	11.94517	NA	Intergenic	MER90|LTR|ERV1	142075	NR_110079	101927378	Hs.539042	NR_110079	ENSG00000235139	LOC101927378	-	uncharacterized LOC101927378	ncRNA
19-PTNLD28-TUMOR_peak_31025	chr14	69693505	69693725	+	11.94517	NA	intron (NR_034164, intron 4 of 10)	intron (NR_034164, intron 4 of 10)	-33066	NM_020692	57452	Hs.21035	NM_020692	HPRD:13562	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
19-PTNLD28-TUMOR_peak_4203	chr1	67998206	67998383	+	11.94517	NA	Intergenic	Intergenic	-102171	NM_001018068	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101223	chr8	135732736	135733012	+	11.94517	NA	Intergenic	Intergenic	-7582	NM_001174157	57623	Hs.446172	NM_020863	HPRD:11712	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT hook domain containing	protein-coding
19-PTNLD28-TUMOR_peak_26690	chr12	121078253	121078455	+	11.94517	NA	promoter-TSS (NM_001033677)	promoter-TSS (NM_001033677)	-68	NM_001033677	9478	Hs.458482	NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54968	chr2	112376123	112376321	+	11.94517	NA	Intergenic	Intergenic	-123530	NR_024373	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90593	chr6	168734246	168734451	+	11.94517	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-13914	NM_214462	168002	Hs.673059	NM_214462	HPRD:12345	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled-binding antagonist of beta-catenin 2	protein-coding
19-PTNLD28-TUMOR_peak_95241	chr7	129624416	129624551	+	11.94517	NA	Intergenic	L1M5|LINE|L1	-31683	NM_003344	7328	Hs.643548	NM_003344	HPRD:03052	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
19-PTNLD28-TUMOR_peak_54917	chr2	111826128	111826269	+	11.94517	NA	intron (NM_001142807, intron 16 of 17)	intron (NM_001142807, intron 16 of 17)	46967	NR_122074	400997	Hs.652337	NR_122074	HPRD:16971	LOC400997	-	uncharacterized LOC400997	ncRNA
19-PTNLD28-TUMOR_peak_27783	chr13	34184622	34184833	+	11.94517	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	66245	NM_001243476	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_60828	chr20	35449470	35449565	+	11.94279	NA	intron (NM_080627, intron 3 of 14)	intron (NM_080627, intron 3 of 14)	38759	NM_199181	140710	Hs.460807	NM_080627	HPRD:11116	SOGA1	C20orf117|KIAA0889|SOGA	suppressor of glucose, autophagy associated 1	protein-coding
19-PTNLD28-TUMOR_peak_28518	chr13	76588878	76589034	+	11.94225	NA	Intergenic	Intergenic	143782	NM_001257995	729420	Hs.586820	NM_001257995	ENSG00000178734	LMO7DN	C13orf45	LMO7 downstream neighbor	protein-coding
19-PTNLD28-TUMOR_peak_63113	chr21	32367430	32367574	+	11.94225	NA	Intergenic	MER5A|DNA|hAT-Charlie	43293	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_98302	chr8	38783456	38783568	+	11.94225	NA	intron (NM_021623, intron 2 of 12)	intron (NM_021623, intron 2 of 12)	24759	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_16617	chr11	1884354	1884568	+	11.94225	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	-1934	NM_001242932	4046	Hs.56729	NM_002339	HPRD:01083	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42687	chr17	58096233	58096398	+	11.93919	NA	promoter-TSS (NR_002924)	promoter-TSS (NR_002924)	21	NR_002924	653645	Hs.600085	NR_002924		TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough transcribed pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86824	chr6	33282774	33283082	+	11.93723	NA	promoter-TSS (NM_003190).3	promoter-TSS (NM_003190).3	-764	NM_172208	6892	Hs.370937	NM_003190	HPRD:09061	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein (tapasin)	protein-coding
19-PTNLD28-TUMOR_peak_73798	chr4	1052388	1052733	+	11.93533	NA	Intergenic	Intergenic	46308	NM_021923	53834	Hs.193326	NM_021923	HPRD:16163	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_45771	chr18	48568768	48569110	+	11.93533	NA	intron (NM_005359, intron 1 of 11)	AluJb|SINE|Alu	12356	NM_005359	4089	Hs.75862	NM_005359	HPRD:02995	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
19-PTNLD28-TUMOR_peak_3319	chr1	47973647	47974105	+	11.93533	NA	Intergenic	CpG	72187	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_27642	chr13	30248784	30248926	+	11.93533	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-79030	NM_003045	6541	Hs.14846	NM_003045	HPRD:00091	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding
19-PTNLD28-TUMOR_peak_24328	chr12	52604430	52604762	+	11.93532	NA	promoter-TSS (NM_001242696)	promoter-TSS (NM_001242696)	43	NM_001242696	283403	Hs.667179	NM_001242696		C12orf80	-	chromosome 12 open reading frame 80	protein-coding
19-PTNLD28-TUMOR_peak_100313	chr8	119865773	119865938	+	11.92941	NA	Intergenic	Intergenic	98528	NM_002546	4982	Hs.81791	NM_002546	HPRD:04032	TNFRSF11B	OCIF|OPG|TR1	tumor necrosis factor receptor superfamily, member 11b	protein-coding
19-PTNLD28-TUMOR_peak_2199	chr1	33482873	33483043	+	11.92941	NA	intron (NM_001199199, intron 4 of 6)	intron (NM_001199199, intron 4 of 6)	19554	NM_001199199	204	Hs.470907	NM_001625	HPRD:00047	AK2	ADK2|AK 2	adenylate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_18654	chr11	57314729	57314882	+	11.92941	NA	intron (NM_001105565, intron 6 of 6)	intron (NM_001105565, intron 6 of 6)	4691	NM_001105565	219537	Hs.68756	NM_001105565	ENSG00000214872	SMTNL1	CHASM	smoothelin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_79876	chr5	53911971	53912159	+	11.92941	NA	Intergenic	LTR82A|LTR|ERVL	87087	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_20294	chr11	78955571	78955804	+	11.92941	NA	intron (NM_001098816, intron 2 of 33)	AT_rich|Low_complexity|Low_complexity	157466	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_87900	chr6	49591302	49591465	+	11.92941	NA	intron (NM_000324, intron 1 of 9)	MER20|DNA|hAT-Charlie	13204	NM_000324	6005	Hs.120950	NM_000324	HPRD:01582	RHAG	CD241|RH2|RH50A|Rh50|Rh50GP|SLC42A1	Rh-associated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_93692	chr7	82157307	82157461	+	11.92941	NA	Intergenic	LTR26|LTR|ERV1	-84353	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_10190	chr1	221651506	221651715	+	11.92941	NA	Intergenic	Intergenic	-141972	NR_024236	400804	Hs.722626	NR_024236	HPRD:17386	C1orf140	-	uncharacterized LOC400804	ncRNA
19-PTNLD28-TUMOR_peak_40916	chr17	29158811	29159372	+	11.92941	NA	promoter-TSS (NM_024857)	promoter-TSS (NM_024857)	68	NM_024857	79915	Hs.528902	NM_024857	HPRD:07792	ATAD5	C17orf41|ELG1|FRAG1	ATPase family, AAA domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_108207	chrX	47930976	47931345	+	11.92941	NA	promoter-TSS (NM_001190255)	promoter-TSS (NM_001190255)	-135	NM_001282201	57232	Hs.650883	NM_001037735	ENSG00000221994	ZNF630	dJ54B20.2	zinc finger protein 630	protein-coding
19-PTNLD28-TUMOR_peak_105932	chr9	124861685	124861816	+	11.92941	NA	Intergenic	Intergenic	-5865	NM_194252	158135	Hs.438937	NM_194252	HPRD:10047	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase-like family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_27390	chr13	21623567	21623702	+	11.92941	NA	intron (NM_014572, intron 1 of 7)	intron (NM_014572, intron 1 of 7)	12088	NM_014572	26524	Hs.78960	NM_014572	HPRD:07277	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_17814	chr11	31667446	31667581	+	11.92941	NA	intron (NM_019040, intron 7 of 9)	intron (NM_019040, intron 7 of 9)	136237	NM_019040	26610	Hs.175534	NM_019040	HPRD:07377	ELP4	AN|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4	elongator acetyltransferase complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_29941	chr14	36617355	36617501	+	11.92941	NA	intron (NR_049735, intron 3 of 3)	L1PA3|LINE|L1	28429	NR_049735	100886964	Hs.742592	NR_049735		PTCSC3	-	papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_91779	chr7	28966591	28966871	+	11.92941	NA	Intergenic	Intergenic	31298	NM_014817	9865	Hs.744120	NM_014817		TRIL	-	TLR4 interactor with leucine-rich repeats	protein-coding
19-PTNLD28-TUMOR_peak_104778	chr9	98519424	98519561	+	11.92941	NA	Intergenic	Intergenic	-118408	NM_001010895	375748	Hs.432364	NM_020207	HPRD:17362	ERCC6L2	BMFS2|C9orf102|RAD26L|SR278	excision repair cross-complementation group 6-like 2	protein-coding
19-PTNLD28-TUMOR_peak_68982	chr3	71779136	71779288	+	11.92941	NA	promoter-TSS (NM_001134650)	promoter-TSS (NM_001134650)	-943	NM_001134650	317649	Hs.581355	NM_173359	HPRD:10687	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
19-PTNLD28-TUMOR_peak_8878	chr1	185639373	185639720	+	11.92941	NA	Intergenic	Intergenic	-41926	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
19-PTNLD28-TUMOR_peak_66229	chr3	4295444	4295548	+	11.92941	NA	Intergenic	L1PA2|LINE|L1	-49492	NM_001276325	6419	Hs.475300	NM_006515	HPRD:10225	SETMAR	HsMar1|METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
19-PTNLD28-TUMOR_peak_87318	chr6	39497906	39498198	+	11.92941	NA	intron (NM_001289021, intron 12 of 21)	intron (NM_001289021, intron 12 of 21)	-98902	NM_001289024	221458	Hs.588202	NM_145027	HPRD:10786	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
19-PTNLD28-TUMOR_peak_106123	chr9	129445872	129446002	+	11.92941	NA	intron (NM_002316, intron 2 of 7)	intron (NM_002316, intron 2 of 7)	69215	NM_002316	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_83351	chr5	153451996	153452123	+	11.92941	NA	Intergenic	Intergenic	33540	NM_001135037	4238	Hs.432818	NM_005927	HPRD:02731	MFAP3	-	microfibrillar-associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_20274	chr11	78618897	78619054	+	11.92941	NA	intron (NM_001098816, intron 6 of 33)	intron (NM_001098816, intron 6 of 33)	-333066	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_2347	chr1	35754481	35754617	+	11.92941	NA	intron (NM_005095, intron 1 of 29)	intron (NM_005095, intron 1 of 29)	19981	NM_005095	9202	Hs.269211	NM_005095	HPRD:10326	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger, MYM-type 4	protein-coding
19-PTNLD28-TUMOR_peak_79176	chr5	17694615	17694843	+	11.92941	NA	Intergenic	LTR33A_|LTR|ERVL	-307310	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_12888	chr10	34541176	34541358	+	11.92941	NA	intron (NM_001184791, intron 18 of 20)	intron (NM_001184791, intron 18 of 20)	-479659	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_99973	chr8	106330550	106330765	+	11.92924	NA	promoter-TSS (NM_012082)	promoter-TSS (NM_012082)	-490	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_104195	chr9	86549998	86550139	+	11.92924	NA	Intergenic	Intergenic	-13688	NM_001271928	55582	Hs.697514	NM_017576	HPRD:11179	KIF27	-	kinesin family member 27	protein-coding
19-PTNLD28-TUMOR_peak_11859	chr10	6128471	6128590	+	11.92924	NA	Intergenic	Intergenic	-2419	NM_032905	84991	Hs.498548	NM_032905	HPRD:09501	RBM17	SPF45	RNA binding motif protein 17	protein-coding
19-PTNLD28-TUMOR_peak_57107	chr2	176866321	176866433	+	11.92924	NA	intron (NM_030650, intron 1 of 12)	intron (NM_030650, intron 1 of 12)	641	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_90194	chr6	157098358	157098657	+	11.92924	NA	promoter-TSS (NM_017519)	promoter-TSS (NM_017519)	-557	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_67524	chr3	37216358	37216484	+	11.92924	NA	promoter-TSS (NM_006309)	promoter-TSS (NM_006309)	285	NM_001282691	9209	Hs.740522	NM_006309	HPRD:10061	LRRFIP2	HUFI-2	leucine rich repeat (in FLII) interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_92452	chr7	47641030	47641216	+	11.92924	NA	Intergenic	MER91C|DNA|hAT-Tip100	-19381	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_41459	chr17	39804279	39804494	+	11.92880	NA	Intergenic	Intergenic	-7935	NR_033415	284116	Hs.725790	NR_033415	ENSG00000214514	KRT42P	-	keratin 42 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_48646	chr19	35605587	35605947	+	11.92880	NA	promoter-TSS (NM_005971)	promoter-TSS (NM_005971)	-965	NM_001136007	5349	Hs.301350	NM_005971	HPRD:05410	FXYD3	MAT8|PLML	FXYD domain containing ion transport regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_97557	chr8	22022781	22022966	+	11.92774	NA	TTS (NM_001172410)	TTS (NM_001172410)	220	NM_006129	649	Hs.1274	NM_001199	HPRD:00209	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
19-PTNLD28-TUMOR_peak_84259	chr5	176163911	176164206	+	11.92774	NA	Intergenic	Intergenic	-6148	NR_108030	102577424	Hs.349025	NR_108030		LOC102577424	-	uncharacterized LOC102577424	ncRNA
19-PTNLD28-TUMOR_peak_68907	chr3	69248313	69248577	+	11.92774	NA	intron (NM_015123, intron 11 of 22)	intron (NM_015123, intron 11 of 22)	-76699	NM_198271	56203	Hs.350621	NM_198271	HPRD:13993	LMOD3	-	leiomodin 3 (fetal)	protein-coding
19-PTNLD28-TUMOR_peak_90831	chr7	1498508	1498688	+	11.92664	NA	intron (NM_182924, intron 1 of 16)	CpG	511	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_6010	chr1	120611417	120611595	+	11.92664	NA	intron (NM_024408, intron 1 of 33)	CpG	811	NM_001200001	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_47192	chr19	10380266	10380433	+	11.92628	NA	Intergenic	CpG	-1168	NM_000201	3383	Hs.643447	NM_000201	HPRD:00996	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_9254	chr1	201678733	201678852	+	11.92628	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-9844	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
19-PTNLD28-TUMOR_peak_30767	chr14	65003348	65003447	+	11.92377	NA	intron (NR_110550, intron 1 of 3)	AluJo|SINE|Alu	3689	NR_110550	102723809	Hs.667192	NR_110550		LOC102723809	-	uncharacterized LOC102723809	ncRNA
19-PTNLD28-TUMOR_peak_52255	chr2	39348436	39348580	+	11.92325	NA	promoter-TSS (NM_005633)	promoter-TSS (NM_005633)	-904	NM_005633	6654	Hs.709893	NM_005633	HPRD:01681	SOS1	GF1|GGF1|GINGF|HGF|NS4	son of sevenless homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_61423	chr20	44960298	44960477	+	11.91960	NA	Intergenic	Intergenic	-23250	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_38097	chr16	58000114	58000302	+	11.91881	NA	intron (NM_001297, intron 2 of 32)	intron (NM_001297, intron 2 of 32)	4812	NM_001135639	1258	Hs.147062	NM_001297	HPRD:07204	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel beta 1	protein-coding
19-PTNLD28-TUMOR_peak_90882	chr7	2132056	2132229	+	11.91881	NA	intron (NM_001013836, intron 11 of 18)	intron (NM_001013836, intron 11 of 18)	140441	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_51352	chr2	17797151	17797406	+	11.91881	NA	intron (NM_003385, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	75471	NM_003385	7447	Hs.444212	NM_003385	HPRD:02890	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_5517	chr1	111583098	111583221	+	11.91881	NA	Intergenic	AluY|SINE|Alu	-76593	NM_001006945	55791	Hs.25245	NM_018372	HPRD:17975	LRIF1	C1orf103|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_90272	chr6	158489827	158490178	+	11.91881	NA	intron (NM_003898, intron 13 of 26)	intron (NM_003898, intron 13 of 26)	51922	NM_001178088	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_67098	chr3	21792486	21792717	+	11.91881	NA	5' UTR (NM_024697, exon 1 of 8)	5' UTR (NM_024697, exon 1 of 8)	215	NM_024697	79750	Hs.21026	NM_024697	HPRD:07990	ZNF385D	ZNF659	zinc finger protein 385D	protein-coding
19-PTNLD28-TUMOR_peak_72946	chr3	186411521	186411900	+	11.91881	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-23388	NM_001102416	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
19-PTNLD28-TUMOR_peak_78753	chr5	6583034	6583578	+	11.91881	NA	promoter-TSS (NR_024424)	promoter-TSS (NR_024424)	-83	NR_024424	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	-	long intergenic non-protein coding RNA 1018	ncRNA
19-PTNLD28-TUMOR_peak_108011	chrX	40726386	40726526	+	11.91881	NA	Intergenic	Intergenic	-34007	NR_027761	100132831	Hs.729923	NR_027761		LOC100132831	-	A20-binding inhibitor of NF-kappaB activation 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_44923	chr18	21298241	21298561	+	11.91881	NA	intron (NM_198129, intron 2 of 74)	intron (NM_198129, intron 2 of 74)	28839	NM_001127717	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_94018	chr7	94932340	94932535	+	11.91881	NA	intron (NM_000446, intron 7 of 8)	intron (NM_000446, intron 7 of 8)	21447	NM_000446	5444	Hs.370995	NM_000446		PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
19-PTNLD28-TUMOR_peak_77909	chr4	165021881	165022438	+	11.91881	NA	intron (NM_001166373, intron 2 of 7)	L1PA2|LINE|L1	96704	NM_012403	23520	Hs.661161	NM_012403		ANP32C	PP32R1	acidic (leucine-rich) nuclear phosphoprotein 32 family, member C	protein-coding
19-PTNLD28-TUMOR_peak_8775	chr1	183624752	183624854	+	11.91881	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-2355	NM_203454	403314	Hs.97335	NM_203454	HPRD:17522	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_23537	chr12	27730006	27730183	+	11.91881	NA	intron (NM_001198915, intron 1 of 26)	intron (NM_001198915, intron 1 of 26)	53049	NM_001198916	8496	Hs.172445	NM_003622	HPRD:04390	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
19-PTNLD28-TUMOR_peak_55286	chr2	120022860	120022965	+	11.91881	NA	3' UTR (NM_182915, exon 6 of 6)	3' UTR (NM_182915, exon 6 of 6)	41528	NM_018234	55240	Hs.647822	NM_018234	HPRD:10285	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2	STEAP family member 3, metalloreductase	protein-coding
19-PTNLD28-TUMOR_peak_38230	chr16	66512677	66512847	+	11.91881	NA	intron (NM_001197225, intron 3 of 4)	intron (NM_001197225, intron 3 of 4)	-2457	NR_109960	101927726	Hs.739193	NR_109960		BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82571	chr5	139154776	139154996	+	11.91881	NA	Intergenic	Intergenic	-20520	NM_032289	84249	Hs.21963	NM_032289	HPRD:15190	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_77023	chr4	128987020	128987133	+	11.91431	NA	intron (NM_001278604, intron 1 of 9)	AluJo|SINE|Alu	4655	NM_178043	55132	Hs.657067	NM_018078	HPRD:10963	LARP1B	LARP2	La ribonucleoprotein domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_56934	chr2	172017682	172017893	+	11.90939	NA	promoter-TSS (NM_012290)	promoter-TSS (NM_012290)	-377	NM_012290	9874	Hs.744917	NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_110226	chrY	13667330	13667431	+	11.90835	NA	Intergenic	(GAATG)n|Satellite|Satellite	866009	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_47324	chr19	11455278	11455388	+	11.90835	NA	intron (NM_033408, intron 3 of 3)	intron (NM_033408, intron 3 of 3)	1648	NM_001145416	374882	Hs.8036	NM_033408	HPRD:18605	TMEM205	UNQ501	transmembrane protein 205	protein-coding
19-PTNLD28-TUMOR_peak_7686	chr1	161413027	161413289	+	11.90645	NA	Intergenic	CpG	-62047	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_32838	chr15	31091863	31092052	+	11.90470	NA	Intergenic	Intergenic	-18282	NR_072991	390561	Hs.721293	NR_072991		HERC2P10	-	hect domain and RLD 2 pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_51828	chr2	28675413	28675576	+	11.90470	NA	Intergenic	Intergenic	-43444	NM_001170585	151056	Hs.444933	NM_153021	HPRD:15141	PLB1	PLB|PLB/LIP|hPLB	phospholipase B1	protein-coding
19-PTNLD28-TUMOR_peak_32117	chr14	102538071	102538268	+	11.90470	NA	Intergenic	Intergenic	15343	NM_005348	3320	Hs.525600	NM_005348	HPRD:00777	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90kDa alpha (cytosolic), class A member 1	protein-coding
19-PTNLD28-TUMOR_peak_63684	chr21	43104650	43104795	+	11.90470	NA	intron (NR_024367, intron 1 of 2)	intron (NR_024367, intron 1 of 2)	5260	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
19-PTNLD28-TUMOR_peak_88338	chr6	74295356	74295537	+	11.90470	NA	Intergenic	Intergenic	-64691	NM_001402	1915	Hs.535192	NM_001402	HPRD:00559	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_84177	chr5	174905849	174906046	+	11.90450	NA	intron (NM_022754, intron 1 of 10)	CpG	433	NM_022754	94081	Hs.369440	NM_022754	HPRD:18044	SFXN1	-	sideroflexin 1	protein-coding
19-PTNLD28-TUMOR_peak_101141	chr8	134498604	134498739	+	11.90450	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	85512	NM_173344	6482	Hs.374257	NM_003033	HPRD:06219	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_24653	chr12	56401051	56401234	+	11.90450	NA	Intergenic	CpG	10099	NM_000456	6821	Hs.558403	NM_000456	HPRD:06055	SUOX	-	sulfite oxidase	protein-coding
19-PTNLD28-TUMOR_peak_55427	chr2	121963224	121963399	+	11.90450	NA	Intergenic	Intergenic	79467	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_72344	chr3	171677498	171677701	+	11.90450	NA	Intergenic	Intergenic	-59069	NR_046852	100874219	Hs.730556	NR_046852		TMEM212-AS1	-	TMEM212 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_50247	chr19	54392968	54393495	+	11.90450	NA	exon (NM_002739, exon 5 of 18)	exon (NM_002739, exon 5 of 18)	7764	NM_002739	5582	Hs.631564	NM_002739	HPRD:01502	PRKCG	PKC-gamma|PKCC|PKCG|SCA14	protein kinase C, gamma	protein-coding
19-PTNLD28-TUMOR_peak_104206	chr9	86751180	86751498	+	11.90450	NA	Intergenic	Intergenic	72981	NR_110995	101927575	Hs.459826	NR_110995	ENSG00000227463	LOC101927575	-	uncharacterized LOC101927575	ncRNA
19-PTNLD28-TUMOR_peak_103554	chr9	69168443	69168722	+	11.90450	NA	Intergenic	Intergenic	12459	NR_015361	440896	Hs.643596	NM_001039940		LOC440896	-	uncharacterized LOC440896	ncRNA
19-PTNLD28-TUMOR_peak_86940	chr6	34433761	34434142	+	11.90450	NA	5' UTR (NM_020804, exon 1 of 10)	5' UTR (NM_020804, exon 1 of 10)	113	NM_020804	29993	Hs.520087	NM_020804	HPRD:05936	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
19-PTNLD28-TUMOR_peak_39418	chr16	89104075	89104219	+	11.90450	NA	Intergenic	Intergenic	-56070	NM_001243279	197322	Hs.461727	NM_174917	HPRD:14117	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_31191	chr14	73030428	73030598	+	11.90450	NA	3' UTR (NM_001204416, exon 18 of 18)	3' UTR (NM_001204416, exon 18 of 18)	46985	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_3390	chr1	49014803	49015073	+	11.90450	NA	intron (NM_032785, intron 11 of 13)	intron (NM_032785, intron 11 of 13)	-77058	NM_019073	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_95339	chr7	130791480	130791792	+	11.90428	NA	non-coding (NR_024153, exon 1 of 5)	non-coding (NR_024153, exon 1 of 5)	153	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000226380	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
19-PTNLD28-TUMOR_peak_104349	chr9	89990610	89990965	+	11.90286	NA	Intergenic	Intergenic	-121356	NM_001288731	1612	Hs.380277	NM_004938	HPRD:02902	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_16587	chr11	1594884	1595483	+	11.90286	NA	intron (NR_021489, intron 1 of 1)	intron (NR_021489, intron 1 of 1)	1212	NR_021489	338651	Hs.633229	NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_73932	chr4	2805517	2805687	+	11.89950	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-8344	NM_001145855	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_43839	chr17	77811162	77811348	+	11.89853	NA	intron (NM_003655, intron 3 of 4)	intron (NM_003655, intron 3 of 4)	1958	NM_003655	8535	Hs.405046	NM_003655	HPRD:04357	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_85276	chr6	10420226	10420402	+	11.89853	NA	promoter-TSS (NM_001042425)	promoter-TSS (NM_001042425)	-517	NM_001042425	7020	Hs.519880	NM_003220	HPRD:00128	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	protein-coding
19-PTNLD28-TUMOR_peak_7664	chr1	161197287	161197598	+	11.89853	NA	TTS (NR_049819)	TTS (NR_049819)	466	NR_049819	100847090		NR_049819		MIR5187	-	microRNA 5187	ncRNA
19-PTNLD28-TUMOR_peak_37198	chr16	30066707	30066875	+	11.89729	NA	intron (NM_000034, intron 4 of 13)	intron (NM_000034, intron 4 of 13)	2380	NM_000034	226	Hs.513490	NM_000034	HPRD:00070	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase A, fructose-bisphosphate	protein-coding
19-PTNLD28-TUMOR_peak_102684	chr9	33185893	33186163	+	11.89729	NA	Intergenic	Intergenic	18171	NR_108108	101929639	Hs.545818	NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45969	chr18	56672573	56672813	+	11.89729	NA	Intergenic	Intergenic	-30278	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89206	chr6	116332741	116332973	+	11.89507	NA	intron (NM_002031, intron 1 of 7)	intron (NM_002031, intron 1 of 7)	-27037	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_43760	chr17	76418226	76418384	+	11.89507	NA	intron (NR_110602, intron 8 of 8)	intron (NR_110602, intron 8 of 8)	43606	NM_024419	9489	Hs.654671	NM_024419	HPRD:17841	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_27407	chr13	22010794	22010948	+	11.89507	NA	intron (NM_153251, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	22637	NM_153251	253832	Hs.564611	NM_153251		ZDHHC20	4933421L13Rik|DHHC-20	zinc finger, DHHC-type containing 20	protein-coding
19-PTNLD28-TUMOR_peak_74019	chr4	3793760	3793928	+	11.89507	NA	Intergenic	Intergenic	25548	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_10823	chr1	231242128	231242390	+	11.89507	NA	Intergenic	Intergenic	-56415	NM_001300889	440730	Hs.655089	NM_001004342	HPRD:15570	TRIM67	TNL	tripartite motif containing 67	protein-coding
19-PTNLD28-TUMOR_peak_5489	chr1	110983585	110983892	+	11.89507	NA	Intergenic	Intergenic	-10050	NM_032414	84432	Hs.514793	NM_032414	HPRD:06946	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
19-PTNLD28-TUMOR_peak_95744	chr7	139013289	139013437	+	11.89507	NA	Intergenic	Intergenic	-11742	NM_001244585	51631	Hs.731488	NM_016019	HPRD:17456	LUC7L2	CGI-74|LUC7B2	LUC7-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_44742	chr18	14543362	14543733	+	11.89507	NA	promoter-TSS (NM_001137671)	promoter-TSS (NM_001137671)	52	NM_001137671	388468	Hs.454726	NM_001137671		POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family, member C	protein-coding
19-PTNLD28-TUMOR_peak_92378	chr7	46213172	46213374	+	11.89507	NA	Intergenic	Intergenic	-252402	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_85517	chr6	13765924	13766091	+	11.89507	NA	Intergenic	LTR59|LTR|ERV1	48785	NM_001031713	63933	Hs.214043	NM_022102	HPRD:12833	MCUR1	C6orf79|CCDC90A	mitochondrial calcium uniporter regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_62038	chr20	52133813	52134176	+	11.89507	NA	Intergenic	MER1A|DNA|hAT-Charlie	-35315	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_42858	chr17	62038873	62039154	+	11.89507	NA	intron (NM_000334, intron 10 of 23)	intron (NM_000334, intron 10 of 23)	11265	NM_000334	6329	Hs.46038	NM_000334	HPRD:04912	SCN4A	HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium channel, voltage-gated, type IV, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_49377	chr19	45842030	45842153	+	11.89507	NA	Intergenic	Intergenic	-1907	NM_177417	147700	Hs.298079	NM_145275	HPRD:03212	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
19-PTNLD28-TUMOR_peak_63907	chr21	45365644	45365771	+	11.89507	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	20428	NM_001037553	56894	Hs.248785	NM_020132	HPRD:10637	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_96244	chr7	149689447	149689704	+	11.89507	NA	Intergenic	Intergenic	-118624	NR_027040	401431	Hs.556998	NM_001008745	HPRD:17391	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96022	chr7	142924988	142925169	+	11.89507	NA	Intergenic	Intergenic	5906	NM_176882	259286	Hs.352241	NM_176882	HPRD:18150	TAS2R40	GPR60|T2R40|T2R58	taste receptor, type 2, member 40	protein-coding
19-PTNLD28-TUMOR_peak_27950	chr13	41240666	41240939	+	11.89467	NA	promoter-TSS (NM_002015)	promoter-TSS (NM_002015)	-68	NM_002015	2308	Hs.370666	NM_002015	HPRD:00645	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
19-PTNLD28-TUMOR_peak_10146	chr1	220701412	220701951	+	11.89467	NA	5' UTR (NM_018650, exon 1 of 18)	5' UTR (NM_018650, exon 1 of 18)	156	NM_001286128	4139	Hs.497806	NM_018650	HPRD:07353	MARK1	MARK|Par-1c|Par1c	MAP/microtubule affinity-regulating kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_21798	chr11	123300143	123300335	+	11.89467	NA	Intergenic	Intergenic	-48019	NR_039714	100616319		NR_039714	miRBase:MI0016855	MIR4493	-	microRNA 4493	ncRNA
19-PTNLD28-TUMOR_peak_8813	chr1	184125751	184125916	+	11.89467	NA	Intergenic	LTR33|LTR|ERVL	105048	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_62186	chr20	55125792	55125975	+	11.89456	NA	Intergenic	Intergenic	17581	NM_001013646	388799	Hs.287759	NM_001013646	HPRD:18388	FAM209B	C20orf107|dJ1153D9.4	family with sequence similarity 209, member B	protein-coding
19-PTNLD28-TUMOR_peak_25099	chr12	67463149	67463710	+	11.89456	NA	Intergenic	CpG	26635	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_9888	chr1	209824659	209824826	+	11.89456	NA	promoter-TSS (NM_001017402)	promoter-TSS (NM_001017402)	-63	NM_001017402	3914	Hs.497636	NM_000228	HPRD:01032	LAMB3	BM600-125KDA|LAM5|LAMNB1	laminin, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_86000	chr6	24906659	24906815	+	11.88956	NA	intron (NM_001286446, intron 1 of 13)	MER94|DNA|hAT-Blackjack	4661	NM_014722	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_6240	chr1	144995593	144995735	+	11.88776	NA	promoter-TSS (NM_014644)	promoter-TSS (NM_014644)	-582	NM_001195261	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_24676	chr12	56551059	56551301	+	11.88647	NA	promoter-TSS (NM_021019)	promoter-TSS (NM_021019)	-865	NM_021019	4637	Hs.632717	NM_021019	HPRD:17618	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin, light chain 6, alkali, smooth muscle and non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_49915	chr19	50605352	50605522	+	11.88111	NA	Intergenic	Intergenic	-1169	NR_024242	100191063	Hs.723094	NR_024242		SNAR-A14	-	small ILF3/NF90-associated RNA A14	snRNA
19-PTNLD28-TUMOR_peak_40461	chr17	18314696	18314795	+	11.87978	NA	non-coding (NR_104343, exon 1 of 2)	non-coding (NR_104343, exon 1 of 2)	272	NR_104343	400579	Hs.375092	NR_104343	HPRD:13421	FLJ35934	-	FLJ35934	ncRNA
19-PTNLD28-TUMOR_peak_7435	chr1	157933571	157933767	+	11.87978	NA	Intergenic	Intergenic	-29394	NM_001286349	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_68795	chr3	64672242	64672372	+	11.87978	NA	exon (NM_182920, exon 2 of 40)	exon (NM_182920, exon 2 of 40)	1058	NM_182920	56999	Hs.656071	NM_182920	HPRD:05662	ADAMTS9	-	ADAM metallopeptidase with thrombospondin type 1 motif, 9	protein-coding
19-PTNLD28-TUMOR_peak_2823	chr1	41826011	41826347	+	11.87345	NA	Intergenic	L2a|LINE|L2	-1424	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_5810	chr1	116918981	116919385	+	11.87339	NA	intron (NM_001160233, intron 1 of 22)	intron (NM_001160233, intron 1 of 22)	2694	NM_001160233	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_71308	chr3	140661417	140661574	+	11.87206	NA	intron (NM_001104647, intron 1 of 6)	CpG	833	NM_001104647	55186	Hs.144130	NM_018155	HPRD:07688	SLC25A36	PNC2	solute carrier family 25 (pyrimidine nucleotide carrier ), member 36	protein-coding
19-PTNLD28-TUMOR_peak_87646	chr6	44006943	44007109	+	11.87206	NA	Intergenic	Intergenic	38689	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_26241	chr12	110440953	110441224	+	11.87191	NA	intron (NM_033121, intron 1 of 14)	intron (NM_033121, intron 1 of 14)	3853	NM_033121	88455	Hs.528703	NM_033121	HPRD:12458	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
19-PTNLD28-TUMOR_peak_12212	chr10	17270472	17270668	+	11.87077	NA	intron (NM_003380, intron 1 of 9)	CpG	312	NM_003380	7431	Hs.455493	NM_003380	HPRD:01899	VIM	CTRCT30|HEL113	vimentin	protein-coding
19-PTNLD28-TUMOR_peak_106766	chr9	139588750	139588938	+	11.87077	NA	Intergenic	Intergenic	-6933	NM_006412	10555	Hs.320151	NM_006412	HPRD:04373	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_43880	chr17	78226799	78226937	+	11.87077	NA	3' UTR (NM_001166349, exon 17 of 17)	3' UTR (NM_001166349, exon 17 of 17)	-7792	NM_001256071	57674	Hs.195642	NM_020914	HPRD:10716	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_14147	chr10	72459535	72459789	+	11.86732	NA	intron (NM_080722, intron 2 of 21)	intron (NM_080722, intron 2 of 21)	27103	NM_080722	140766	Hs.352156	NM_080722	HPRD:06329	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif, 14	protein-coding
19-PTNLD28-TUMOR_peak_109905	chrX	153046392	153046650	+	11.86732	NA	promoter-TSS (NM_001170760)	promoter-TSS (NM_001170760)	65	NM_001170761	26576	Hs.104865	NM_014370	HPRD:06731	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_77412	chr4	145632589	145632809	+	11.86533	NA	intron (NM_022475, intron 7 of 12)	L1PA8|LINE|L1	-65528	NR_037595	646576	Hs.632595	NR_037595	ENSG00000248890	HHIP-AS1	-	HHIP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36045	chr16	4896571	4896744	+	11.86533	NA	promoter-TSS (NM_001079514)	promoter-TSS (NM_001079514)	646	NM_032569	84656	Hs.387255	NM_032569	HPRD:17625	GLYR1	BM045|HIBDL|N-PAC|NP60	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding
19-PTNLD28-TUMOR_peak_64601	chr22	22309485	22309646	+	11.86533	NA	Intergenic	Intergenic	-2315	NM_014634	9647	Hs.112728	NM_014634	HPRD:10163	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent, 1F	protein-coding
19-PTNLD28-TUMOR_peak_64038	chr21	46726939	46727259	+	11.86533	NA	Intergenic	Intergenic	19132	NR_026943	642852	Hs.11637	NR_026943		LOC642852	-	uncharacterized LOC642852	ncRNA
19-PTNLD28-TUMOR_peak_109878	chrX	152785543	152785660	+	11.86533	NA	Intergenic	Intergenic	-15979	NM_001001344	492	Hs.533956	NM_021949	HPRD:02057	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase, Ca++ transporting, plasma membrane 3	protein-coding
19-PTNLD28-TUMOR_peak_67122	chr3	23077484	23077739	+	11.86516	NA	Intergenic	L1PA6|LINE|L1	-167173	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_107532	chrX	10588600	10588712	+	11.86516	NA	promoter-TSS (NM_000381)	promoter-TSS (NM_000381)	18	NM_033289	4281	Hs.27695	NM_000381	HPRD:02047	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
19-PTNLD28-TUMOR_peak_4465	chr1	78580132	78580308	+	11.86516	NA	intron (NM_017655, intron 3 of 5)	intron (NM_017655, intron 3 of 5)	68631	NM_017655	54810	Hs.659356	NM_017655		GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_82490	chr5	138303595	138303877	+	11.86516	NA	intron (NM_022464, intron 7 of 9)	intron (NM_022464, intron 7 of 9)	-92679	NM_015564	26045	Hs.656653	NM_015564	HPRD:17454	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_81663	chr5	114895327	114895543	+	11.86516	NA	Intergenic	Intergenic	-14844	NM_020177	56929	Hs.47367	NM_020177	HPRD:16384	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog c (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_29934	chr14	36483479	36483723	+	11.86516	NA	Intergenic	HERVL18-int|LTR|ERVL	-56032	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_27087	chr12	126881784	126882090	+	11.86516	NA	Intergenic	Intergenic	-45090	NR_015398	100128554	Hs.408255	NR_015398	ENSG00000214043	LOC100128554	-	uncharacterized LOC100128554	ncRNA
19-PTNLD28-TUMOR_peak_105876	chr9	124123349	124123502	+	11.86516	NA	intron (NM_198194, intron 1 of 2)	intron (NM_198194, intron 1 of 2)	9157	NR_073037	2040	Hs.253903	NM_004099	HPRD:00585	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
19-PTNLD28-TUMOR_peak_76177	chr4	88071985	88072220	+	11.86516	NA	Intergenic	Intergenic	69318	NM_001292003	57563	Hs.106601	NM_020803	HPRD:13928	KLHL8	-	kelch-like family member 8	protein-coding
19-PTNLD28-TUMOR_peak_7928	chr1	166002107	166002330	+	11.86516	NA	Intergenic	Intergenic	121817	NR_030626	100126349		NR_030626		MIR921	MIRN921|hsa-mir-921	microRNA 921	ncRNA
19-PTNLD28-TUMOR_peak_102155	chr9	8558218	8558418	+	11.86516	NA	intron (NM_001040712, intron 3 of 29)	intron (NM_001040712, intron 3 of 29)	175628	NM_130393	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_53449	chr2	72463697	72463898	+	11.86516	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-88806	NM_019885	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_46581	chr19	1333861	1334084	+	11.86516	NA	Intergenic	Intergenic	-21004	NM_032853	84939	Hs.515016	NM_032853	HPRD:14789	MUM1	EXPAND1|HSPC211|MUM-1	melanoma associated antigen (mutated) 1	protein-coding
19-PTNLD28-TUMOR_peak_5958	chr1	120074269	120074542	+	11.86516	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	24579	NM_000862	3283	Hs.364941	NM_000862	HPRD:04920	HSD3B1	3BETAHSD|HSD3B|HSDB3|HSDB3A|I|SDR11E1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding
19-PTNLD28-TUMOR_peak_47347	chr19	11698524	11698726	+	11.86516	NA	Intergenic	Intergenic	-8824	NM_001111036	54	Hs.1211	NM_001611	HPRD:01374	ACP5	SPENCDI|TRAP	acid phosphatase 5, tartrate resistant	protein-coding
19-PTNLD28-TUMOR_peak_85566	chr6	14864247	14864488	+	11.86516	NA	Intergenic	Intergenic	-381839	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_86177	chr6	26607712	26607997	+	11.86516	NA	Intergenic	LTR50|LTR|ERVL	10683	NM_013375	29777	Hs.254406	NM_013375	HPRD:16469	ABT1	hABT1	activator of basal transcription 1	protein-coding
19-PTNLD28-TUMOR_peak_74513	chr4	10666105	10666316	+	11.86516	NA	intron (NM_052964, intron 2 of 18)	MER5A1|DNA|hAT-Charlie	20176	NM_052964	116449	Hs.678910	NM_052964		CLNK	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
19-PTNLD28-TUMOR_peak_61466	chr20	45567781	45567929	+	11.86516	NA	intron (NM_005244, intron 1 of 15)	MLT1K|LTR|ERVL-MaLR	44592	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_109054	chrX	104154445	104154633	+	11.86516	NA	intron (NM_017416, intron 2 of 10)	L1PA2|LINE|L1	310838	NM_031274	56157	Hs.567543	NM_031274	HPRD:02257	TEX13A	-	testis expressed 13A	protein-coding
19-PTNLD28-TUMOR_peak_70934	chr3	133410351	133410512	+	11.86516	NA	Intergenic	L2a|LINE|L2	-29694	NM_007027	11073	Hs.593379	NM_007027	HPRD:09678	TOPBP1	TOP2BP1	topoisomerase (DNA) II binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_88879	chr6	100036569	100037097	+	11.86516	NA	Intergenic	CpG	-17817	NM_021620	59336	Hs.287386	NM_021620		PRDM13	MU-MB-20.220|PFM10	PR domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_81790	chr5	121851981	121852126	+	11.86516	NA	Intergenic	Intergenic	-37271	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
19-PTNLD28-TUMOR_peak_104427	chr9	91362859	91362958	+	11.86516	NA	Intergenic	Intergenic	-2088	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_93959	chr7	92776823	92777032	+	11.86516	NA	intron (NM_152703, intron 1 of 4)	intron (NM_152703, intron 1 of 4)	753	NM_152703	219285	Hs.489118	NM_152703	HPRD:10798	SAMD9L	C7orf6|DRIF2|UEF1	sterile alpha motif domain containing 9-like	protein-coding
19-PTNLD28-TUMOR_peak_50755	chr2	810032	810218	+	11.86516	NA	intron (NR_111963, intron 1 of 2)	intron (NR_111963, intron 1 of 2)	53987	NR_033880	339822	Hs.651879	NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
19-PTNLD28-TUMOR_peak_95901	chr7	141485888	141486006	+	11.86516	NA	Intergenic	Intergenic	-4070	NM_018980	54429	Hs.675370	NM_018980	HPRD:05453	TAS2R5	T2R5	taste receptor, type 2, member 5	protein-coding
19-PTNLD28-TUMOR_peak_99820	chr8	102729275	102729550	+	11.86516	NA	intron (NM_001040624, intron 6 of 7)	intron (NM_001040624, intron 6 of 7)	74027	NM_032041	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_9413	chr1	203255831	203255984	+	11.86436	NA	promoter-TSS (NR_117098)	promoter-TSS (NR_117098)	-373	NR_117097	100506775	Hs.443859	NR_117097		LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
19-PTNLD28-TUMOR_peak_38046	chr16	57496280	57496653	+	11.86238	NA	promoter-TSS (NM_032940)	promoter-TSS (NM_032940)	-85	NM_032940	5432	Hs.79402	NM_002694	HPRD:15945	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	polymerase (RNA) II (DNA directed) polypeptide C, 33kDa	protein-coding
19-PTNLD28-TUMOR_peak_70823	chr3	131121730	131121902	+	11.86238	NA	Intergenic	Intergenic	21191	NR_033268	131870	Hs.282050	NM_152395	HPRD:08097	NUDT16	-	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding
19-PTNLD28-TUMOR_peak_62817	chr21	16794380	16794548	+	11.86238	NA	Intergenic	Intergenic	-307880	NM_013396	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_106654	chr9	137443935	137444044	+	11.86238	NA	Intergenic	Intergenic	-89662	NM_001278074	1289	Hs.210283	NM_000093	HPRD:00368	COL5A1	-	collagen, type V, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_41308	chr17	37779754	37779907	+	11.86238	NA	Intergenic	Intergenic	-3347	NM_032192	84152	Hs.286192	NM_032192	HPRD:05097	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding
19-PTNLD28-TUMOR_peak_103639	chr9	70865791	70865980	+	11.86238	NA	intron (NM_001291821, intron 4 of 13)	AluJo|SINE|Alu	9024	NM_001291821	445571	Hs.645337	NM_201453		CBWD3	bA561O23.1	COBW domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_87578	chr6	43364267	43364385	+	11.86238	NA	Intergenic	HERVP71A-int|LTR|ERV1	-27145	NM_014345	24149	Hs.509718	NM_014345	HPRD:11707	ZNF318	TZF|ZFP318	zinc finger protein 318	protein-coding
19-PTNLD28-TUMOR_peak_108012	chrX	40726699	40726882	+	11.86238	NA	Intergenic	Intergenic	-34341	NR_027761	100132831	Hs.729923	NR_027761		LOC100132831	-	A20-binding inhibitor of NF-kappaB activation 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_97109	chr8	10208306	10208680	+	11.86238	NA	intron (NM_001199729, intron 6 of 6)	intron (NM_001199729, intron 6 of 6)	-123582	NR_120604	101929191	Hs.595262	NR_120604		LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
19-PTNLD28-TUMOR_peak_8144	chr1	171053391	171053778	+	11.86238	NA	Intergenic	Intergenic	-6434	NM_006894	2328	Hs.445350	NM_006894	HPRD:00633	FMO3	FMOII|TMAU|dJ127D3.1	flavin containing monooxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_12973	chr10	36723867	36723967	+	11.86238	NA	Intergenic	Intergenic	656687	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_27193	chr12	131261240	131261382	+	11.86238	NA	Intergenic	Intergenic	62508	NM_194356	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_44449	chr18	8367291	8367592	+	11.86238	NA	promoter-TSS (NR_024419)	promoter-TSS (NR_024419)	-409	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
19-PTNLD28-TUMOR_peak_21028	chr11	108433572	108433683	+	11.86238	NA	intron (NM_015065, intron 1 of 5)	intron (NM_015065, intron 1 of 5)	30747	NM_015065	23086	Hs.28540	NM_015065	HPRD:08341	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
19-PTNLD28-TUMOR_peak_17741	chr11	27720557	27720749	+	11.86238	NA	TTS (NR_033315)	TTS (NR_033315)	561	NM_170734	627	Hs.502182	NM_001709	HPRD:00214	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_101403	chr8	141578507	141578725	+	11.86238	NA	intron (NM_012154, intron 3 of 18)	intron (NM_012154, intron 3 of 18)	56535	NR_040712	54108	Hs.279704	NM_017444	HPRD:06275	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
19-PTNLD28-TUMOR_peak_8616	chr1	181129102	181129296	+	11.86004	NA	Intergenic	Intergenic	71561	NM_016545	51278	Hs.15725	NM_016545	HPRD:06210	IER5	SBBI48	immediate early response 5	protein-coding
19-PTNLD28-TUMOR_peak_105163	chr9	109625095	109625561	+	11.86004	NA	promoter-TSS (NM_021224)	promoter-TSS (NM_021224)	-50	NM_021224	58499	Hs.370379	NM_021224	HPRD:10333	ZNF462	Zfp462	zinc finger protein 462	protein-coding
19-PTNLD28-TUMOR_peak_73866	chr4	1785878	1786177	+	11.86004	NA	Intergenic	Intergenic	-9012	NM_000142	2261	Hs.1420	NM_000142	HPRD:00624	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_54285	chr2	96996240	96996435	+	11.85975	NA	Intergenic	Intergenic	4392	NM_001163524	150771	Hs.65009	NM_178495	HPRD:13893	ITPRIPL1	KIAA1754L	inositol 1,4,5-trisphosphate receptor interacting protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_51386	chr2	19080976	19081269	+	11.85975	NA	Intergenic	Intergenic	-310276	NM_001199088	93034	Hs.744358	NM_033253	HPRD:11405	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
19-PTNLD28-TUMOR_peak_54669	chr2	106042126	106042226	+	11.85975	NA	intron (NM_201557, intron 1 of 5)	LTR5A|LTR|ERVK	13054	NM_201557	2274	Hs.443687	NM_001450	HPRD:04026	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
19-PTNLD28-TUMOR_peak_87434	chr6	41570685	41571084	+	11.85975	NA	TTS (NM_001012427)	TTS (NM_001012427)	4423	NR_039784	100616178		NR_039784		MIR4641	-	microRNA 4641	ncRNA
19-PTNLD28-TUMOR_peak_67563	chr3	38082497	38082640	+	11.85975	NA	intron (NM_007337, intron 1 of 35)	AluY|SINE|Alu	1872	NM_007337	9940	Hs.714499	NM_007335	HPRD:07234	DLEC1	CFAP81|DLC1|F56	deleted in lung and esophageal cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_35474	chr15	100560544	100560706	+	11.85975	NA	intron (NM_139057, intron 18 of 21)	intron (NM_139057, intron 18 of 21)	-213493	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_79824	chr5	52079293	52079423	+	11.85975	NA	Intergenic	Intergenic	-4416	NM_015946	53918	Hs.644352	NM_015946		PELO	PRO1770	pelota homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104689	chr9	96929318	96929560	+	11.85975	NA	Intergenic	CpG	-8800	NR_029476	406881		NR_029476	miRBase:MI0000060	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
19-PTNLD28-TUMOR_peak_44028	chr17	79881337	79881575	+	11.85661	NA	promoter-TSS (NM_032711)	promoter-TSS (NM_032711)	-12	NM_032711	4097	Hs.252229	NM_002359	HPRD:03605	MAFG	hMAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G	protein-coding
19-PTNLD28-TUMOR_peak_64452	chr22	20654340	20654463	+	11.85390	NA	Intergenic	Intergenic	-94004	NM_003426	7625	Hs.517418	NM_003426	HPRD:01928	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
19-PTNLD28-TUMOR_peak_34321	chr15	71149149	71149382	+	11.85390	NA	intron (NM_001284357, intron 1 of 16)	intron (NM_001284357, intron 1 of 16)	-2661	NM_197958	55323	Hs.416755	NM_018357	HPRD:10966	LARP6	ACHN	La ribonucleoprotein domain family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_23774	chr12	39298741	39298906	+	11.85390	NA	intron (NM_153634, intron 1 of 19)	intron (NM_153634, intron 1 of 19)	597	NM_153634	144402	Hs.40910	NM_153634	HPRD:16747	CPNE8	-	copine VIII	protein-coding
19-PTNLD28-TUMOR_peak_102492	chr9	22208916	22209139	+	11.85390	NA	Intergenic	Intergenic	-199715	NM_078487	1030	Hs.72901	NM_004936	HPRD:02696	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_25901	chr12	104323439	104323614	+	11.85156	NA	promoter-TSS (NR_037425)	promoter-TSS (NR_037425)	463	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	GNN	-	Grp94 neighboring nucleotidase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86800	chr6	33165374	33165523	+	11.85156	NA	intron (NM_001291989, intron 3 of 8)	intron (NM_001291989, intron 3 of 8)	3025	NM_021976	6257	Hs.388034	NM_021976	HPRD:01578	RXRB	DAUDI6|H-2RIIBP|NR2B2|RCoR-1	retinoid X receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_95382	chr7	131338240	131338690	+	11.85050	NA	Intergenic	MIRb|SINE|MIR	-97089	NM_001018111	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_6148	chr1	143930988	143931143	+	11.84726	NA	Intergenic	Intergenic	-17905	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_103044	chr9	38170966	38171232	+	11.84520	NA	Intergenic	LTR10A|LTR|ERV1	-101889	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_18271	chr11	44731686	44731848	+	11.84520	NA	Intergenic	L2|LINE|L2	-54209	NM_130783	90139	Hs.385634	NM_130783	HPRD:17435	TSPAN18	TSPAN	tetraspanin 18	protein-coding
19-PTNLD28-TUMOR_peak_106760	chr9	139519598	139519900	+	11.84520	NA	Intergenic	Intergenic	-33559	NR_046367	51162	Hs.91481	NM_016215	HPRD:16351	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF-like-domain, multiple 7	protein-coding
19-PTNLD28-TUMOR_peak_65512	chr22	38875175	38875399	+	11.84520	NA	intron (NM_016657, intron 2 of 3)	intron (NM_016657, intron 2 of 3)	11220	NM_006855	11015	Hs.745072	NM_006855	HPRD:17177	KDELR3	ERD2L3	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_40333	chr17	16428189	16428431	+	11.84520	NA	Intergenic	L1MB5|LINE|L1	-32805	NM_207387	388341	Hs.25425	NM_207387	HPRD:16939	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
19-PTNLD28-TUMOR_peak_18095	chr11	36280383	36280528	+	11.84520	NA	Intergenic	Intergenic	30544	NM_001101653	29099	Hs.279836	NM_014186		COMMD9	-	COMM domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_33322	chr15	43482437	43482659	+	11.84520	NA	exon (NM_012142, exon 6 of 11)	exon (NM_012142, exon 6 of 11)	5082	NR_027513	23582	Hs.36794	NM_012142		CCNDBP1	DIP1|GCIP|HHM	cyclin D-type binding-protein 1	protein-coding
19-PTNLD28-TUMOR_peak_89097	chr6	111197430	111197675	+	11.84478	NA	intron (NM_001287216, intron 1 of 4)	CpG	1565	NM_001634	262	Hs.159118	NM_001634	HPRD:01622	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_14096	chr10	71905446	71905988	+	11.84263	NA	exon (NM_173555, exon 1 of 4)	exon (NM_173555, exon 1 of 4)	779	NR_073594	219743	Hs.533655	NM_173555	HPRD:15593	TYSND1	NET41	trypsin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_102048	chr9	4741729	4741960	+	11.83389	NA	promoter-TSS (NM_001199855)	promoter-TSS (NM_001199855)	-45	NM_001199855	50808	Hs.732022	NM_016282		AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_25311	chr12	72405739	72405878	+	11.83389	NA	intron (NM_173353, intron 8 of 10)	intron (NM_173353, intron 8 of 10)	73182	NM_173353	121278	Hs.736576	NM_173353	HPRD:09594	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding
19-PTNLD28-TUMOR_peak_21891	chr11	125274899	125275081	+	11.83389	NA	intron (NM_022062, intron 7 of 12)	intron (NM_022062, intron 7 of 12)	91216	NM_005103	9638	Hs.224008	NM_005103	HPRD:09212	FEZ1	-	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
19-PTNLD28-TUMOR_peak_19566	chr11	67807856	67807996	+	11.83389	NA	intron (NM_006019, intron 1 of 19)	intron (NM_006019, intron 1 of 19)	1464	NM_006019	10312	Hs.495985	NM_006019	HPRD:05207	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3	protein-coding
19-PTNLD28-TUMOR_peak_35704	chr16	1209993	1210569	+	11.83389	NA	intron (NM_001005407, intron 2 of 33)	CpG	7040	NM_001005407	8912	Hs.459642	NM_021098	HPRD:07442	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding
19-PTNLD28-TUMOR_peak_47433	chr19	12779754	12779995	+	11.83338	NA	promoter-TSS (NM_032332)	promoter-TSS (NM_032332)	591	NM_016145	51398	Hs.108969	NM_016145		WDR83OS	C19orf56|PTD008	WD repeat domain 83 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_34921	chr15	83974589	83975023	+	11.83046	NA	Intergenic	Intergenic	-21338	NM_001717	646	Hs.459153	NM_001717	HPRD:11799	BNC1	BNC|BSN1|HsT19447	basonuclin 1	protein-coding
19-PTNLD28-TUMOR_peak_77817	chr4	158941560	158941721	+	11.83046	NA	Intergenic	Intergenic	152078	NM_016613	51313	Hs.567498	NM_016613	HPRD:13194	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
19-PTNLD28-TUMOR_peak_53156	chr2	65800396	65800657	+	11.83046	NA	Intergenic	MER5B|DNA|hAT-Charlie	-140870	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_63314	chr21	35909998	35910362	+	11.83046	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	-10872	NM_203418	1827	Hs.282326	NM_004414	HPRD:04226	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
19-PTNLD28-TUMOR_peak_16467	chr11	393343	393448	+	11.82811	NA	promoter-TSS (NM_007183)	promoter-TSS (NM_007183)	-822	NM_007183	11187	Hs.534395	NM_007183	HPRD:05711	PKP3	-	plakophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_93216	chr7	73260071	73260274	+	11.82811	NA	Intergenic	LTR13A|LTR|ERVK	-3317	NM_152559	155368	Hs.647042	NM_152559	HPRD:15661	WBSCR27	-	Williams Beuren syndrome chromosome region 27	protein-coding
19-PTNLD28-TUMOR_peak_19837	chr11	71783417	71783588	+	11.82579	NA	promoter-TSS (NR_036123)	promoter-TSS (NR_036123)	-154	NR_036123	100422953		NR_036123	miRBase:MI0014195	MIR3165	-	microRNA 3165	ncRNA
19-PTNLD28-TUMOR_peak_13310	chr10	45870237	45870392	+	11.82579	NA	intron (NM_001256153, intron 1 of 13)	intron (NM_001256153, intron 1 of 13)	690	NM_000698	240	Hs.89499	NM_000698	HPRD:01065	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_1164	chr1	17768214	17768394	+	11.82579	NA	Intergenic	Intergenic	-2054	NM_018715	55920	Hs.380857	NM_018715	HPRD:18171	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
19-PTNLD28-TUMOR_peak_43670	chr17	75542890	75543243	+	11.82579	NA	promoter-TSS (NR_040050)	promoter-TSS (NR_040050)	43	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
19-PTNLD28-TUMOR_peak_4447	chr1	78153339	78153685	+	11.82516	NA	Intergenic	Intergenic	-5169	NM_015534	26009	Hs.480506	NM_015534	HPRD:15907	ZZZ3	ATAC1	zinc finger, ZZ-type containing 3	protein-coding
19-PTNLD28-TUMOR_peak_53572	chr2	74756408	74756688	+	11.82516	NA	promoter-TSS (NM_013247)	promoter-TSS (NM_013247)	16	NM_145074	27429	Hs.469045	NM_013247	HPRD:05919	HTRA2	OMI|PARK13|PRSS25	HtrA serine peptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_10116	chr1	219983894	219984054	+	11.82082	NA	Intergenic	Intergenic	-62645	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_101443	chr8	142127155	142127402	+	11.82082	NA	Intergenic	Intergenic	-11442	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_65165	chr22	32057902	32058075	+	11.82082	NA	Intergenic	CpG	-31178	NM_014338	23761	Hs.420559	NM_014338	HPRD:17854	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_53747	chr2	85184564	85184665	+	11.82044	NA	Intergenic	AluY|SINE|Alu	-13617	NM_020122	56888	Hs.654968	NM_020122	HPRD:13761	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_4632	chr1	86045793	86045931	+	11.81962	NA	promoter-TSS (NM_001554)	promoter-TSS (NM_001554)	-582	NM_001554	3491	Hs.8867	NM_001554	HPRD:09089	CYR61	CCN1|GIG1|IGFBP10	cysteine-rich, angiogenic inducer, 61	protein-coding
19-PTNLD28-TUMOR_peak_92239	chr7	44058092	44058317	+	11.81962	NA	intron (NR_003655, intron 1 of 15)	MIR|SINE|MIR	544	NR_003655	84820	Hs.657028	NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66015	chr22	46942752	46942960	+	11.81909	NA	Intergenic	Intergenic	-9789	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_86701	chr6	32014754	32015128	+	11.81909	NA	intron (NM_019105, intron 30 of 43)	intron (NM_019105, intron 30 of 43)	-1036	NM_032470	7148	Hs.485104	NM_019105	HPRD:02993	TNXB	EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS	tenascin XB	protein-coding
19-PTNLD28-TUMOR_peak_40557	chr17	19291044	19291577	+	11.81689	NA	promoter-TSS (NM_001198695)	promoter-TSS (NM_001198695)	-778	NM_001198695	4239	Hs.296049	NM_002404	HPRD:02789	MFAP4	-	microfibrillar-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_1126	chr1	17099227	17099631	+	11.81689	NA	Intergenic	Intergenic	-8454	NM_001271733	11223	Hs.349110	NM_001271733		MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1-like	protein-coding
19-PTNLD28-TUMOR_peak_10485	chr1	226320817	226321125	+	11.81689	NA	Intergenic	Intergenic	53452	NM_022735	64746	Hs.520207	NM_022735	HPRD:08432	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_234	chr1	2383341	2383476	+	11.81483	NA	Intergenic	Intergenic	-24346	NM_014638	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-eta2|PLCL4|PLCeta2	phospholipase C, eta 2	protein-coding
19-PTNLD28-TUMOR_peak_73582	chr3	196339817	196339967	+	11.81483	NA	Intergenic	AluSx1|SINE|Alu	-26764	NM_198565	375387	Hs.702186	NM_198565	HPRD:17452	NRROS	GARPL1|LRRC33|UNQ3030	negative regulator of reactive oxygen species	protein-coding
19-PTNLD28-TUMOR_peak_1043	chr1	16375060	16375630	+	11.81483	NA	promoter-TSS (NM_001165945)	promoter-TSS (NM_001165945)	88	NM_001165945	1188	Hs.352243	NM_000085	HPRD:03607	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride channel, voltage-sensitive Kb	protein-coding
19-PTNLD28-TUMOR_peak_35930	chr16	3494030	3494337	+	11.81324	NA	promoter-TSS (NM_152457)	promoter-TSS (NM_152457)	515	NM_001083601	79903	Hs.513296	NM_024845	HPRD:07852	NAA60	HAT4|NAT15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_79710	chr5	43020209	43020365	+	11.81324	NA	promoter-TSS (NR_104650)	promoter-TSS (NR_104650)	-542	NR_104650	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
19-PTNLD28-TUMOR_peak_71955	chr3	157155220	157155756	+	11.81324	NA	exon (NM_002852, exon 2 of 3)	exon (NM_002852, exon 2 of 3)	908	NM_002852	5806	Hs.591286	NM_002852	HPRD:03928	PTX3	TNFAIP5|TSG-14	pentraxin 3, long	protein-coding
19-PTNLD28-TUMOR_peak_69947	chr3	115231878	115232442	+	11.81324	NA	Intergenic	Intergenic	-109991	NM_002045	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_65996	chr22	46748974	46749199	+	11.81324	NA	intron (NM_001282782, intron 6 of 9)	intron (NM_001282782, intron 6 of 9)	17788	NM_001282783	55687	Hs.439524	NM_018006	HPRD:15571	TRMU	MTO2|MTU1|TRMT|TRMT1|TRNT1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_107044	chrUn_gl000216	99451	99563	+	11.81324	NA	NA	L2c|LINE|L2	NA	NA								
19-PTNLD28-TUMOR_peak_14127	chr10	72237555	72237733	+	11.81324	NA	promoter-TSS (NM_014431)	promoter-TSS (NM_014431)	-920	NM_014431	27143	Hs.202351	NM_014431	HPRD:11419	PALD1	KIAA1274|PALD	phosphatase domain containing, paladin 1	protein-coding
19-PTNLD28-TUMOR_peak_2194	chr1	33454884	33455097	+	11.81024	NA	Intergenic	L3|LINE|CR1	-24576	NM_001127361	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_41700	chr17	42298670	42298846	+	11.80966	NA	promoter-TSS (NM_001076683)	promoter-TSS (NM_001076683)	236	NR_045058	7343	Hs.89781	NM_014233	HPRD:02814	UBTF	NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor, RNA polymerase I	protein-coding
19-PTNLD28-TUMOR_peak_37276	chr16	30808312	30808488	+	11.80646	NA	Intergenic	Intergenic	-9877	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
19-PTNLD28-TUMOR_peak_11280	chr1	240775206	240775604	+	11.80646	NA	promoter-TSS (NM_022469)	promoter-TSS (NM_022469)	57	NM_022469	64388	Hs.98206	NM_022469	HPRD:16390	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_815	chr1	12062221	12062508	+	11.80646	NA	intron (NM_001127660, intron 10 of 17)	intron (NM_001127660, intron 10 of 17)	-16935	NM_021933	60672	Hs.8595	NM_021933	HPRD:07768	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
19-PTNLD28-TUMOR_peak_105375	chr9	112945635	112945770	+	11.80646	NA	Intergenic	Intergenic	24711	NM_001012993	401546	Hs.125608	NM_001012993	HPRD:10249	C9orf152	bA470J20.2	chromosome 9 open reading frame 152	protein-coding
19-PTNLD28-TUMOR_peak_26163	chr12	109115057	109115175	+	11.80646	NA	intron (NM_014325, intron 1 of 10)	intron (NM_014325, intron 1 of 10)	9503	NM_001276471	23603	Hs.330384	NM_014325	HPRD:09244	CORO1C	HCRNN4	coronin, actin binding protein, 1C	protein-coding
19-PTNLD28-TUMOR_peak_40905	chr17	28971808	28972052	+	11.80646	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	20594	NR_033420	6459	Hs.684860	NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3-domain GRB2-like 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_53219	chr2	67742278	67742801	+	11.80646	NA	Intergenic	Intergenic	118097	NM_019002	54465	Hs.353022	NM_019002	HPRD:13282	ETAA1	ETAA16	Ewing tumor-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_79128	chr5	16888940	16889092	+	11.80646	NA	intron (NM_012334, intron 1 of 40)	AluJb|SINE|Alu	47369	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_42078	chr17	46755866	46756030	+	11.80646	NA	Intergenic	CpG	43934	NM_032391	84366	Hs.116467	NM_032391	HPRD:17897	PRAC1	C17orf92|PRAC	prostate cancer susceptibility candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_103164	chr9	41361004	41361129	+	11.80646	NA	Intergenic	Intergenic	-33702	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_11543	chr1	248020810	248021033	+	11.80646	NA	exon (NM_015431, exon 1 of 6)	exon (NM_015431, exon 1 of 6)	420	NM_015431	25893	Hs.269151	NM_015431		TRIM58	BIA2	tripartite motif containing 58	protein-coding
19-PTNLD28-TUMOR_peak_21997	chr11	127232971	127233276	+	11.80646	NA	Intergenic	L1PA3|LINE|L1	92158	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
19-PTNLD28-TUMOR_peak_20020	chr11	74413529	74413710	+	11.80646	NA	intron (NM_015424, intron 9 of 11)	intron (NM_015424, intron 9 of 11)	17763	NR_039845	100616402		NR_039845		MIR4696	-	microRNA 4696	ncRNA
19-PTNLD28-TUMOR_peak_82735	chr5	140943796	140943980	+	11.80646	NA	non-coding (NR_038333, exon 3 of 3)	non-coding (NR_038333, exon 3 of 3)	6010	NR_038333	100505658	Hs.655458	NR_038333	ENSG00000246422	LOC100505658	-	uncharacterized LOC100505658	ncRNA
19-PTNLD28-TUMOR_peak_66654	chr3	12235829	12235957	+	11.80646	NA	Intergenic	L1M5|LINE|L1	-35042	NM_003256	7079	Hs.591665	NM_003256	HPRD:03557	TIMP4	-	TIMP metallopeptidase inhibitor 4	protein-coding
19-PTNLD28-TUMOR_peak_43764	chr17	76473183	76473300	+	11.80646	NA	intron (NM_173628, intron 51 of 80)	L2a|LINE|L2	-7751	NR_102401	100996295	Hs.615304	NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29227	chr13	114992347	114992462	+	11.80646	NA	Intergenic	Intergenic	-7958	NM_003903	8881	Hs.374127	NM_003903	HPRD:04587	CDC16	ANAPC6|APC6|CUT9	cell division cycle 16	protein-coding
19-PTNLD28-TUMOR_peak_92745	chr7	57927679	57927845	+	11.80646	NA	Intergenic	Intergenic	417879	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
19-PTNLD28-TUMOR_peak_72720	chr3	183493679	183493859	+	11.80232	NA	exon (NM_018023, exon 18 of 31)	exon (NM_018023, exon 18 of 31)	49624	NM_024871	79929	Hs.478465	NM_024871	HPRD:07793	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63894	chr21	45208890	45209122	+	11.80232	NA	promoter-TSS (NM_003683)	promoter-TSS (NM_003683)	-412	NM_003683	8568	Hs.110757	NM_003683		RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
19-PTNLD28-TUMOR_peak_108788	chrX	75369402	75369521	+	11.80232	NA	Intergenic	CpG	-23303	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16934	chr11	7996315	7996456	+	11.80171	NA	Intergenic	Intergenic	-11326	NM_176821	338322	Hs.449636	NM_176821	HPRD:14802	NLRP10	CLR11.1|NALP10|NOD8|PAN5|PYNOD	NLR family, pyrin domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_66990	chr3	17101622	17101791	+	11.80171	NA	intron (NM_015184, intron 4 of 5)	intron (NM_015184, intron 4 of 5)	127018	NR_037465	100500913		NR_037465	miRBase:MI0016135	MIR3714	-	microRNA 3714	ncRNA
19-PTNLD28-TUMOR_peak_85523	chr6	13849154	13849374	+	11.80171	NA	Intergenic	MER89|LTR|ERV1	-34472	NM_001031713	63933	Hs.214043	NM_022102	HPRD:12833	MCUR1	C6orf79|CCDC90A	mitochondrial calcium uniporter regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_69069	chr3	73467876	73468050	+	11.80171	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-102510	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_58735	chr2	229409914	229410083	+	11.80171	NA	Intergenic	Intergenic	-363637	NM_030623	80309	Hs.436306	NM_030623	HPRD:18052	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
19-PTNLD28-TUMOR_peak_72886	chr3	185625201	185625370	+	11.80171	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	30639	NM_001243879	6434	Hs.533122	NM_004593		TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_74661	chr4	17449437	17449611	+	11.80171	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	64333	NM_000320	5860	Hs.75438	NM_000320	HPRD:02025	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
19-PTNLD28-TUMOR_peak_21935	chr11	126116331	126116471	+	11.80171	NA	intron (NM_024556, intron 4 of 8)	MIRb|SINE|MIR	22476	NM_003139	6734	Hs.368376	NM_003139	HPRD:01645	SRPR	DP|Sralpha	signal recognition particle receptor (docking protein)	protein-coding
19-PTNLD28-TUMOR_peak_61334	chr20	44055084	44055692	+	11.80171	NA	TTS (NM_001184729)	TTS (NM_001184729)	1238	NR_106870	102465487		NR_106870		MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
19-PTNLD28-TUMOR_peak_45857	chr18	53913148	53913406	+	11.80171	NA	Intergenic	Intergenic	-108510	NR_040025	100505474	Hs.662191	NR_040025	ENSG00000267712	LOC100505474	-	uncharacterized LOC100505474	ncRNA
19-PTNLD28-TUMOR_peak_98357	chr8	40490161	40490401	+	11.80171	NA	intron (NM_001135731, intron 4 of 5)	MLT1C|LTR|ERVL-MaLR	265062	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_84228	chr5	175724778	175724953	+	11.80171	NA	intron (NM_198567, intron 3 of 8)	HAL1|LINE|L1	59495	NM_198567	375484	Hs.719847	NM_198567	HPRD:13486	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO-interacting motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32602	chr15	24346743	24346912	+	11.80171	NA	Intergenic	CpG	68226	NR_026647	791115	Hs.560378	NR_026647	ENSG00000260551	PWRN2	NCRNA00199	Prader-Willi region non-protein coding RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_3880	chr1	60196658	60196802	+	11.80171	NA	intron (NM_001113411, intron 15 of 16)	MIRb|SINE|MIR	2238	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_101919	chr9	757673	757819	+	11.80171	NA	Intergenic	Intergenic	50940	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_8627	chr1	181294237	181294431	+	11.80171	NA	Intergenic	Intergenic	88810	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_15269	chr10	102902101	102902397	+	11.80171	NA	Intergenic	Intergenic	11188	NM_001195517	3195	Hs.89583	NM_005521	HPRD:01728	TLX1	HOX11|TCL3	T-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_24409	chr12	53267635	53267754	+	11.79882	NA	Intergenic	Intergenic	-24916	NM_173352	196374	Hs.665267	NM_173352	HPRD:17171	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
19-PTNLD28-TUMOR_peak_3281	chr1	47594597	47594878	+	11.79566	NA	Intergenic	Intergenic	-8370	NM_001010969	284541	Hs.726474	NM_001010969		CYP4A22	-	cytochrome P450, family 4, subfamily A, polypeptide 22	protein-coding
19-PTNLD28-TUMOR_peak_102955	chr9	36781631	36781741	+	11.79566	NA	Intergenic	Intergenic	41910	NR_039686	100616289		NR_039686	miRBase:MI0016827	MIR4475	-	microRNA 4475	ncRNA
19-PTNLD28-TUMOR_peak_75755	chr4	77352009	77352122	+	11.79566	NA	Intergenic	Intergenic	-4188	NM_020859	57619	Hs.702168	NM_020859	HPRD:07053	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
19-PTNLD28-TUMOR_peak_76108	chr4	86344585	86344818	+	11.79566	NA	Intergenic	Intergenic	-51583	NM_001025616	83478	Hs.444229	NM_031305	HPRD:09804	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
19-PTNLD28-TUMOR_peak_39944	chr17	7108203	7108707	+	11.79566	NA	intron (NM_001128827, intron 2 of 19)	CpG	-11989	NM_001270447	37	Hs.437178	NM_000018	HPRD:01940	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase, very long chain	protein-coding
19-PTNLD28-TUMOR_peak_55751	chr2	131993528	131993695	+	11.79566	NA	intron (NM_001083538, intron 6 of 14)	LTR4|LTR|ERV1	17687	NM_001083538	445582	Hs.686146	NM_001004054	HPRD:12329	POTEE	A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma	POTE ankyrin domain family, member E	protein-coding
19-PTNLD28-TUMOR_peak_84126	chr5	173775593	173776022	+	11.79566	NA	intron (NR_125806, intron 1 of 5)	intron (NR_125806, intron 1 of 5)	12450	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_15605	chr10	112167654	112167841	+	11.79366	NA	Intergenic	Intergenic	-89878	NM_004419	1847	Hs.2128	NM_004419	HPRD:04349	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
19-PTNLD28-TUMOR_peak_63760	chr21	43810918	43811140	+	11.79212	NA	intron (NR_046020, intron 2 of 12)	MLT1C|LTR|ERVL-MaLR	-1771	NM_032404	64699	Hs.208600	NM_024022	HPRD:05696	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane protease, serine 3	protein-coding
19-PTNLD28-TUMOR_peak_14763	chr10	88960848	88960983	+	11.79212	NA	Intergenic	L1ME2|LINE|L1	-24290	NM_001099338	728118	Hs.710565	NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
19-PTNLD28-TUMOR_peak_61308	chr20	43919601	43919772	+	11.79212	NA	Intergenic	Intergenic	-15797	NM_001281448	11317	Hs.248217	NM_014276		RBPJL	RBPSUHL|SUHL	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding
19-PTNLD28-TUMOR_peak_43875	chr17	78161458	78161612	+	11.79212	NA	promoter-TSS (NM_052819)	promoter-TSS (NM_052819)	-64	NM_052819	79092	Hs.675480	NM_024110	HPRD:06235	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_23018	chr12	10517910	10518066	+	11.79212	NA	intron (NR_120430, intron 1 of 3)	HERV15-int|LTR|ERV1	1620	NR_120430	101928100	Hs.638425	NR_120430	ENSG00000245648	LOC101928100	-	uncharacterized LOC101928100	ncRNA
19-PTNLD28-TUMOR_peak_93509	chr7	76172321	76172430	+	11.79212	NA	Intergenic	AluSq2|SINE|Alu	-6283	NR_029411	100133091	Hs.712837	NR_029411	ENSG00000205485	LOC100133091	-	uncharacterized LOC100133091	ncRNA
19-PTNLD28-TUMOR_peak_58475	chr2	220095042	220095171	+	11.79194	NA	promoter-TSS (NR_104255)	promoter-TSS (NR_104255)	496	NM_001042410	55139	Hs.437647	NM_018089	HPRD:07673	ANKZF1	ZNF744	ankyrin repeat and zinc finger domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96236	chr7	149552526	149552707	+	11.79194	NA	intron (NM_001099220, intron 5 of 7)	LTR78|LTR|ERV1	17107	NM_001099220	643641	Hs.731923	NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
19-PTNLD28-TUMOR_peak_63231	chr21	34641516	34641727	+	11.79194	NA	intron (NM_000628, intron 2 of 6)	intron (NM_000628, intron 2 of 6)	2956	NM_000628	3588	Hs.654593	NM_000628	HPRD:00473	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2	interleukin 10 receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_7376	chr1	156866984	156867111	+	11.79047	NA	intron (NM_001080471, intron 1 of 22)	L2b|LINE|L2	3524	NM_001080471	375033	Hs.142003	NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_43399	chr17	73236474	73236648	+	11.78991	NA	intron (NM_001291642, intron 8 of 13)	intron (NM_001291642, intron 8 of 13)	21181	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_6944	chr1	153330074	153330416	+	11.78991	NA	promoter-TSS (NM_002965)	promoter-TSS (NM_002965)	-85	NM_002965	6280	Hs.112405	NM_002965	HPRD:00472	S100A9	60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14	S100 calcium binding protein A9	protein-coding
19-PTNLD28-TUMOR_peak_37400	chr16	32251820	32252213	+	11.78991	NA	Intergenic	Intergenic	-12629	NM_001243722	729264	Hs.513537	NM_001243722		TP53TG3D	TP53TG3|TP53TG3B|TP53TG3C	TP53 target 3D	protein-coding
19-PTNLD28-TUMOR_peak_5605	chr1	113261438	113261595	+	11.78980	NA	Intergenic	CpG	-1673	NM_182759	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_40805	chr17	27077176	27077360	+	11.78762	NA	3' UTR (NM_004295, exon 7 of 7)	3' UTR (NM_004295, exon 7 of 7)	6245	NM_004295	9618	Hs.8375	NM_004295	HPRD:03915	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_80477	chr5	69500368	69500567	+	11.78000	NA	intron (NR_029426, intron 6 of 9)	intron (NR_029426, intron 6 of 9)	21155	NR_024054	11039	Hs.582500	NM_006780		SMA4	SMA3|b55C20.2	glucuronidase, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_106485	chr9	134376572	134376758	+	11.77292	NA	Intergenic	Intergenic	-1624	NM_007171	10585	Hs.522449	NM_007171	HPRD:06305	POMT1	LGMD2K|MDDGA1|MDDGB1|MDDGC1|RT	protein-O-mannosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_99245	chr8	75514259	75514372	+	11.77292	NA	intron (NR_033830, intron 1 of 5)	MER41B|LTR|ERV1	2214	NR_033830	441355	Hs.647162	NR_033830	ENSG00000254349	FLJ39080	-	uncharacterized LOC441355	ncRNA
19-PTNLD28-TUMOR_peak_4891	chr1	93416935	93417110	+	11.77292	NA	intron (NM_001252273, intron 1 of 4)	MLT1E2|LTR|ERVL-MaLR	10057	NM_001252269	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_108375	chrX	53024958	53025175	+	11.77292	NA	promoter-TSS (NM_001242496)	promoter-TSS (NM_001242496)	-415	NM_001242489	29057	Hs.6451	NM_014138	HPRD:06683	FAM156A	PRO0659|TMEM29	family with sequence similarity 156, member A	protein-coding
19-PTNLD28-TUMOR_peak_63288	chr21	35445814	35445977	+	11.77292	NA	promoter-TSS (NM_032476)	promoter-TSS (NM_032476)	72	NM_032476	64968	Hs.302742	NM_032476	HPRD:11374	MRPS6	C21orf101|MRP-S6|RPMS6|S6mt	mitochondrial ribosomal protein S6	protein-coding
19-PTNLD28-TUMOR_peak_34011	chr15	65426103	65426301	+	11.77292	NA	promoter-TSS (NM_005707)	promoter-TSS (NM_005707)	-28	NM_005707	10081	Hs.458596	NM_005707	HPRD:09736	PDCD7	ES18|HES18	programmed cell death 7	protein-coding
19-PTNLD28-TUMOR_peak_35116	chr15	89455108	89455445	+	11.77292	NA	intron (NM_001114614, intron 1 of 6)	intron (NM_001114614, intron 1 of 6)	1387	NM_005928	4240	Hs.3745	NM_005928	HPRD:03789	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule-EGF factor 8 protein	protein-coding
19-PTNLD28-TUMOR_peak_87582	chr6	43404091	43404601	+	11.77292	NA	intron (NM_033450, intron 4 of 19)	intron (NM_033450, intron 4 of 19)	2066	NR_106894	102466746		NR_106894		MIR6780B	hsa-mir-6780b	microRNA 6780b	ncRNA
19-PTNLD28-TUMOR_peak_64291	chr22	18723432	18723546	+	11.77292	NA	Intergenic	Intergenic	55985	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74357	chr4	8536402	8536561	+	11.77117	NA	Intergenic	MER4D|LTR|ERV1	-45483	NR_045511	27201	Hs.740355	NM_080819		GPR78	-	G protein-coupled receptor 78	protein-coding
19-PTNLD28-TUMOR_peak_6862	chr1	152161206	152161375	+	11.77117	NA	Intergenic	Intergenic	-29586	NM_001122965	126638	Hs.376144	NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
19-PTNLD28-TUMOR_peak_33374	chr15	44486803	44487010	+	11.77094	NA	promoter-TSS (NM_001286490)	promoter-TSS (NM_001286490)	-262	NM_001286490	84978	Hs.578544	NM_032892	HPRD:17493	FRMD5	-	FERM domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_94185	chr7	98740632	98741100	+	11.77094	NA	intron (NM_001199847, intron 1 of 17)	G-rich|Low_complexity|Low_complexity	877	NM_020429	57154	Hs.189329	NM_020429	HPRD:06902	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_58530	chr2	220550236	220550389	+	11.77094	NA	Intergenic	Intergenic	58020	NR_048551	6508	Hs.1176	NM_005070	HPRD:00109	SLC4A3	AE3|SLC2C	solute carrier family 4 (anion exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_7845	chr1	164618049	164618228	+	11.77094	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	89541	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_69039	chr3	72773387	72773513	+	11.77094	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	124148	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_106031	chr9	127014403	127014566	+	11.77094	NA	Intergenic	Intergenic	-5401	NM_001166167	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_41466	chr17	39822525	39822824	+	11.77094	NA	Intergenic	Intergenic	-22453	NM_005801	10209	Hs.150580	NM_005801		EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_26314	chr12	111474990	111475171	+	11.77060	NA	intron (NM_015267, intron 1 of 21)	CpG	3252	NM_015267	23316	Hs.124953	NM_015267	HPRD:10851	CUX2	CDP2|CUTL2	cut-like homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_29937	chr14	36538131	36538455	+	11.77060	NA	Intergenic	Intergenic	-1340	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_92881	chr7	64973785	64973919	+	11.77060	NA	intron (NR_038378, intron 9 of 9)	CpG	135140	NM_007139	168374	Hs.9521	NM_007139	HPRD:04919	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
19-PTNLD28-TUMOR_peak_3090	chr1	44883115	44883316	+	11.77060	NA	intron (NM_018150, intron 2 of 14)	CpG	12255	NM_018150	55182	Hs.456557	NM_018150	HPRD:13336	RNF220	C1orf164	ring finger protein 220	protein-coding
19-PTNLD28-TUMOR_peak_80159	chr5	60573769	60573883	+	11.77060	NA	Intergenic	MER94|DNA|hAT-Blackjack	-54274	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_106696	chr9	138435369	138435563	+	11.77060	NA	Intergenic	LTR38|LTR|ERV1	-2519	NM_001293193	29991	Hs.567489	NM_014582	HPRD:01253	OBP2A	LCN13|OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
19-PTNLD28-TUMOR_peak_90624	chr6	169563069	169563429	+	11.77060	NA	Intergenic	Intergenic	90960	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_30958	chr14	69031996	69032328	+	11.77060	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	228469	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_40445	chr17	18084868	18085020	+	11.76436	NA	Intergenic	Intergenic	-1923	NM_017758	54890	Hs.744130	NM_017758	HPRD:08621	ALKBH5	ABH5|OFOXD|OFOXD1	AlkB family member 5, RNA demethylase	protein-coding
19-PTNLD28-TUMOR_peak_106243	chr9	130892399	130892517	+	11.76235	NA	non-coding (NR_024425, exon 1 of 1)	non-coding (NR_024425, exon 1 of 1)	1650	NR_024425	389791	Hs.632678	NM_001013652		PTGES2-AS1	-	PTGES2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_18406	chr11	46411077	46411235	+	11.76235	NA	Intergenic	CpG	-3049	NM_000741	1132	Hs.248100	NM_000741	HPRD:00330	CHRM4	HM4|M4R	cholinergic receptor, muscarinic 4	protein-coding
19-PTNLD28-TUMOR_peak_91221	chr7	6992912	6993066	+	11.76225	NA	Intergenic	HERVE-int|LTR|ERV1	-127063	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70448	chr3	125655913	125656031	+	11.76225	NA	promoter-TSS (NM_001015050)	promoter-TSS (NM_001015050)	-85	NM_001015050	200810	Hs.591299	NM_001015050	HPRD:18574	ALG1L	ALG1L1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_25980	chr12	105814550	105814672	+	11.76225	NA	Intergenic	Intergenic	90197	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_3195	chr1	46502815	46502964	+	11.76225	NA	Intergenic	Intergenic	95491	NM_003629	8503	Hs.655387	NM_003629	HPRD:05831	PIK3R3	p55|p55-GAMMA	phosphoinositide-3-kinase, regulatory subunit 3 (gamma)	protein-coding
19-PTNLD28-TUMOR_peak_3996	chr1	62773328	62773472	+	11.76225	NA	intron (NM_181712, intron 1 of 9)	MER102a|DNA|hAT-Charlie	11683	NM_181712	163782	Hs.283398	NM_181712	HPRD:14109	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
19-PTNLD28-TUMOR_peak_80478	chr5	69518420	69518617	+	11.76182	NA	intron (NR_027386, intron 4 of 5)	intron (NR_027386, intron 4 of 5)	3104	NR_024054	11039	Hs.582500	NM_006780		SMA4	SMA3|b55C20.2	glucuronidase, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65329	chr22	36725520	36725779	+	11.76026	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-42696	NR_106877	102465491		NR_106877		MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19-PTNLD28-TUMOR_peak_86648	chr6	31704091	31704392	+	11.75990	NA	promoter-TSS (NM_001287594)	promoter-TSS (NM_001287594)	81	NM_001287594	1192	Hs.414565	NM_001288	HPRD:04188	CLIC1	G6|NCC27	chloride intracellular channel 1	protein-coding
19-PTNLD28-TUMOR_peak_41490	chr17	40075781	40075992	+	11.75794	NA	promoter-TSS (NM_001096)	promoter-TSS (NM_001096)	-614	NM_001096	47	Hs.387567	NM_001096	HPRD:00155	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
19-PTNLD28-TUMOR_peak_59108	chr2	238538496	238538601	+	11.75794	NA	intron (NM_001137550, intron 1 of 23)	MIRc|SINE|MIR	2324	NM_001137550	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38700	chr16	74432537	74432668	+	11.75794	NA	Intergenic	Intergenic	22766	NM_001011880	497190	Hs.454670	NM_001011880	HPRD:17419	CLEC18B	MRCL2	C-type lectin domain family 18, member B	protein-coding
19-PTNLD28-TUMOR_peak_106536	chr9	135545643	135545802	+	11.75677	NA	promoter-TSS (NM_012204)	promoter-TSS (NM_012204)	-6	NM_012204	9329	Hs.656646	NM_012204		GTF3C4	KAT12|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC, polypeptide 4, 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_93343	chr7	74284381	74284647	+	11.75677	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-16642	NM_001281447	84163	Hs.647017	NM_173537	HPRD:16402	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45634	chr18	46187037	46187263	+	11.75677	NA	intron (NM_014772, intron 3 of 11)	intron (NM_014772, intron 3 of 11)	-9821	NR_039897	100616366		NR_039897		MIR4743	-	microRNA 4743	ncRNA
19-PTNLD28-TUMOR_peak_49680	chr19	48823399	48823511	+	11.75232	NA	promoter-TSS (NM_144577)	promoter-TSS (NM_144577)	-123	NM_144577	93233	Hs.112645	NM_144577	HPRD:08149	CCDC114	CILD20	coiled-coil domain containing 114	protein-coding
19-PTNLD28-TUMOR_peak_71498	chr3	145835331	145835503	+	11.75117	NA	intron (NM_000935, intron 3 of 18)	intron (NM_000935, intron 3 of 18)	43865	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_96307	chr7	150573919	150574053	+	11.75117	NA	Intergenic	Intergenic	24421	NM_001091	26	Hs.647097	NM_001091	HPRD:00088	AOC1	ABP|ABP1|DAO|DAO1|KAO	amine oxidase, copper containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69836	chr3	112533246	112533358	+	11.75117	NA	Intergenic	Intergenic	31495	NM_001199215	344807	Hs.531814	NM_001008784	HPRD:16691	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_107405	chrX	3311348	3312031	+	11.75117	NA	Intergenic	Intergenic	-47005	NM_015419	25878	Hs.369422	NM_015419	HPRD:06456	MXRA5	-	matrix-remodelling associated 5	protein-coding
19-PTNLD28-TUMOR_peak_6471	chr1	147460291	147460399	+	11.75117	NA	intron (NM_016334, intron 11 of 13)	AluJo|SINE|Alu	26843	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_71895	chr3	156253024	156253318	+	11.75117	NA	intron (NM_172160, intron 13 of 13)	intron (NM_172160, intron 13 of 13)	19802	NM_007107	6747	Hs.518346	NM_007107	HPRD:16206	SSR3	TRAPG	signal sequence receptor, gamma (translocon-associated protein gamma)	protein-coding
19-PTNLD28-TUMOR_peak_22291	chr11	133835223	133835407	+	11.75117	NA	Intergenic	Intergenic	-8666	NM_001277285	22997	Hs.204121	NM_014987	ENSG00000080854	IGSF9B	-	immunoglobulin superfamily, member 9B	protein-coding
19-PTNLD28-TUMOR_peak_697	chr1	10600770	10600931	+	11.75117	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	65847	NM_004565	5195	Hs.149983	NM_004565	HPRD:03477	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
19-PTNLD28-TUMOR_peak_96861	chr8	1556110	1556249	+	11.75117	NA	intron (NM_001277161, intron 3 of 10)	L1PA2|LINE|L1	13651	NR_103863	100507435	Hs.667133	NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27718	chr13	31420512	31420745	+	11.75117	NA	Intergenic	Intergenic	-36071	NR_103813	440132	Hs.729493	NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
19-PTNLD28-TUMOR_peak_48687	chr19	36024978	36025121	+	11.75117	NA	intron (NM_014364, intron 1 of 10)	MIRb|SINE|MIR	735	NM_014364	26330	Hs.248017	NM_014364	HPRD:13566	GAPDHS	GAPD2|GAPDH-2|GAPDS|HSD-35	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding
19-PTNLD28-TUMOR_peak_61586	chr20	46865440	46865620	+	11.75117	NA	Intergenic	Intergenic	-123124	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_100646	chr8	126131445	126131643	+	11.75117	NA	intron (NM_173685, intron 3 of 7)	intron (NM_173685, intron 3 of 7)	27461	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_15733	chr10	115510909	115511215	+	11.75117	NA	promoter-TSS (NM_024889)	promoter-TSS (NM_024889)	-151	NM_001193435	79949	Hs.228320	NM_024889	HPRD:12591	PLEKHS1	C10orf81|HEL185|bA211N11.2	pleckstrin homology domain containing, family S member 1	protein-coding
19-PTNLD28-TUMOR_peak_83386	chr5	153983723	153983900	+	11.75117	NA	Intergenic	Intergenic	-8179	NR_036094	100422950		NR_036094	miRBase:MI0014165	MIR3141	-	microRNA 3141	ncRNA
19-PTNLD28-TUMOR_peak_57578	chr2	196183208	196183447	+	11.75117	NA	Intergenic	Intergenic	-338205	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_49803	chr19	49609967	49610149	+	11.75117	NA	intron (NM_003089, intron 8 of 9)	intron (NM_003089, intron 8 of 9)	-7560	NM_022165	64130	Hs.221737	NM_022165	HPRD:10040	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_87790	chr6	46053540	46053677	+	11.75117	NA	Intergenic	L1P1|LINE|L1	-5523	NM_001114086	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_59992	chr20	17661897	17662074	+	11.74754	NA	intron (NM_001042576, intron 1 of 25)	CpG	943	NM_004587	6238	Hs.472213	NM_004587	HPRD:11796	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51679	chr2	26829825	26829989	+	11.74639	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	34304	NM_001029881	130106	Hs.591579	NM_001029881	HPRD:18726	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
19-PTNLD28-TUMOR_peak_101587	chr8	144140193	144140308	+	11.74639	NA	Intergenic	LTR13|LTR|ERVK	19571	NM_173687	286122	Hs.660382	NM_173687	HPRD:08781	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
19-PTNLD28-TUMOR_peak_84060	chr5	172925299	172925681	+	11.74639	NA	Intergenic	Intergenic	-81147	NR_027108	285593	Hs.409730	NR_027108	ENSG00000253955	LOC285593	-	uncharacterized LOC285593	ncRNA
19-PTNLD28-TUMOR_peak_2617	chr1	39547026	39547580	+	11.74639	NA	Intergenic	CpG	-2536	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_14420	chr10	77406147	77406459	+	11.74639	NA	Intergenic	Intergenic	-136216	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_103352	chr9	46303607	46303774	+	11.74639	NA	Intergenic	Intergenic	83683	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_96766	chr7	158575590	158575751	+	11.74639	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	46649	NM_020728	57488	Hs.490795	NM_020728	HPRD:13053	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin-like protein 2	protein-coding
19-PTNLD28-TUMOR_peak_15134	chr10	99497375	99497614	+	11.74639	NA	promoter-TSS (NM_001002261)	promoter-TSS (NM_001002261)	616	NM_001174120	118813	Hs.744075	NM_144588	HPRD:15735	ZFYVE27	PROTRUDIN|SPG33	zinc finger, FYVE domain containing 27	protein-coding
19-PTNLD28-TUMOR_peak_69583	chr3	107416459	107417040	+	11.74639	NA	intron (NM_001276286, intron 3 of 16)	L1PA3|LINE|L1	174966	NM_001276286	56987	Hs.124366	NM_020235	HPRD:10688	BBX	ARTC1|HBP2|HSPC339|MDS001	bobby sox homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_19321	chr11	65585369	65585518	+	11.74639	NA	Intergenic	CpG	-15967	NM_152760	254122	Hs.591950	NM_152760	HPRD:08090	SNX32	SNX6B	sorting nexin 32	protein-coding
19-PTNLD28-TUMOR_peak_77218	chr4	140664311	140664458	+	11.74639	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	77462	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_67208	chr3	24536948	24537315	+	11.74206	NA	promoter-TSS (NM_000461)	promoter-TSS (NM_000461)	-818	NM_001252634	7068	Hs.187861	NM_000461	HPRD:07521	THRB	C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2	thyroid hormone receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_47552	chr19	13895886	13896013	+	11.74152	NA	Intergenic	Intergenic	-10325	NM_023072	65249	Hs.466015	NM_023072	HPRD:15904	ZSWIM4	-	zinc finger, SWIM-type containing 4	protein-coding
19-PTNLD28-TUMOR_peak_108161	chrX	47076592	47076872	+	11.74152	NA	promoter-TSS (NM_033018)	promoter-TSS (NM_033018)	-796	NM_033018	5127	Hs.496068	NM_006201	HPRD:02409	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin-dependent kinase 16	protein-coding
19-PTNLD28-TUMOR_peak_3037	chr1	44177320	44177477	+	11.74058	NA	intron (NR_073016, intron 1 of 11)	Tigger15a|DNA|TcMar-Tigger	4194	NM_174967	6487	Hs.597915	NM_006279	HPRD:05930	ST3GAL3	EIEE15|MRT12|SIAT6|ST3GALII|ST3GalIII|ST3N	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_24863	chr12	59989643	59989988	+	11.73972	NA	promoter-TSS (NM_001270623)	promoter-TSS (NM_001270623)	-6	NM_001270622	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_49916	chr19	50607321	50607495	+	11.73956	NA	promoter-TSS (NR_024215).5	promoter-TSS (NR_024215).5	-76	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
19-PTNLD28-TUMOR_peak_28500	chr13	76279169	76279315	+	11.73881	NA	intron (NM_005358, intron 2 of 29)	intron (NM_005358, intron 2 of 29)	-55555	NM_015842	4008	Hs.207631	NM_005358	HPRD:05078	LMO7	FBX20|FBXO20|LOMP	LIM domain 7	protein-coding
19-PTNLD28-TUMOR_peak_108339	chrX	51239359	51239564	+	11.73881	NA	promoter-TSS (NM_018159)	promoter-TSS (NM_018159)	-2	NM_018159	55190	Hs.200016	NM_018159	HPRD:06667	NUDT11	APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta	nudix (nucleoside diphosphate linked moiety X)-type motif 11	protein-coding
19-PTNLD28-TUMOR_peak_38760	chr16	75351235	75351423	+	11.73881	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	-49378	NM_001170715	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_43777	chr17	76713106	76713360	+	11.73881	NA	promoter-TSS (NM_001292019)	promoter-TSS (NM_001292019)	-119	NM_001292019	9267	Hs.191215	NM_004762	HPRD:01630	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
19-PTNLD28-TUMOR_peak_51422	chr2	20068441	20068642	+	11.73881	NA	promoter-TSS (NR_033875)	promoter-TSS (NR_033875)	-74	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
19-PTNLD28-TUMOR_peak_80794	chr5	76067956	76068133	+	11.73881	NA	Intergenic	Intergenic	-46789	NM_005242	2150	Hs.744181	NM_005242	HPRD:02960	F2RL1	GPR11|PAR2	coagulation factor II (thrombin) receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_103789	chr9	74207453	74207579	+	11.73881	NA	Intergenic	L2c|LINE|L2	176284	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_109566	chrX	134782589	134782992	+	11.73881	NA	Intergenic	LTR43|LTR|ERV1	-64395	NM_001017417	541466	Hs.460937	NM_001017417	HPRD:18673	CT45A1	CT45|CT45-1|CT45.1	cancer/testis antigen family 45, member A1	protein-coding
19-PTNLD28-TUMOR_peak_32869	chr15	31584760	31585009	+	11.73881	NA	Intergenic	L1MEf|LINE|L1	-34199	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_94786	chr7	107476700	107477159	+	11.73881	NA	Intergenic	Intergenic	-33251	NM_000111	1811	Hs.1650	NM_000111	HPRD:00544	SLC26A3	CLD|DRA	solute carrier family 26 (anion exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_96531	chr7	153264627	153264925	+	11.73881	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-155457	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_91551	chr7	22149961	22150253	+	11.73881	NA	Intergenic	Intergenic	-164565	NM_001127370	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_102628	chr9	32149574	32149674	+	11.73881	NA	Intergenic	L1PA3|LINE|L1	-234977	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_32025	chr14	100402529	100402779	+	11.73881	NA	exon (NM_004434, exon 19 of 22)	exon (NM_004434, exon 19 of 22)	-129097	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_89667	chr6	138732487	138732708	+	11.73881	NA	intron (NM_014320, intron 3 of 3)	intron (NM_014320, intron 3 of 3)	7261	NM_014320	23593	Hs.486589	NM_014320		HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23236	chr12	15082016	15082253	+	11.73881	NA	promoter-TSS (NM_001300784)	promoter-TSS (NM_001300784)	-75	NM_001300784	121506	Hs.162143	NM_152321		ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
19-PTNLD28-TUMOR_peak_58191	chr2	212638490	212638601	+	11.73881	NA	intron (NM_005235, intron 4 of 27)	intron (NM_005235, intron 4 of 27)	652539	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
19-PTNLD28-TUMOR_peak_72945	chr3	186387624	186387775	+	11.73881	NA	intron (NM_000412, intron 2 of 6)	intron (NM_000412, intron 2 of 6)	3952	NM_000412	3273	Hs.1498	NM_000412	HPRD:00812	HRG	HPRG|HRGP|THPH11	histidine-rich glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_92206	chr7	43317772	43317940	+	11.73881	NA	intron (NM_015052, intron 3 of 29)	L2a|LINE|L2	127362	NR_037508	100500829		NR_037508		MIR3943	-	microRNA 3943	ncRNA
19-PTNLD28-TUMOR_peak_20592	chr11	93259642	93259930	+	11.73881	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	16760	NM_020179	56935	Hs.438064	NM_020179	HPRD:17008	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_71796	chr3	152760971	152761130	+	11.73881	NA	Intergenic	Intergenic	-118951	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_76048	chr4	84430383	84430520	+	11.73881	NA	Intergenic	HERVH48-int|LTR|ERV1	-24161	NM_139076	84142	Hs.334772	NM_139076	HPRD:08584	FAM175A	ABRA1|CCDC98	family with sequence similarity 175, member A	protein-coding
19-PTNLD28-TUMOR_peak_876	chr1	13003335	13003440	+	11.73514	NA	intron (NM_001010889, intron 1 of 3).2	intron (NM_001010889, intron 1 of 3).2	-1034	NM_001300891	101929983		NM_001300891		LOC101929983	-	PRAME family member 9/15-like	protein-coding
19-PTNLD28-TUMOR_peak_16461	chr11	320766	321000	+	11.73361	NA	promoter-TSS (NM_021034)	promoter-TSS (NM_021034)	31	NR_049759	10410	Hs.374650	NM_021034	HPRD:05719	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_41389	chr17	38655889	38656054	+	11.73320	NA	intron (NM_032865, intron 1 of 12)	intron (NM_032865, intron 1 of 12)	1883	NM_032865	84951	Hs.438292	NM_032865	HPRD:12223	TNS4	CTEN	tensin 4	protein-coding
19-PTNLD28-TUMOR_peak_51132	chr2	11264667	11264869	+	11.73320	NA	non-coding (NR_040080, exon 4 of 9)	non-coding (NR_040080, exon 4 of 9)	7534	NR_040080	285150	Hs.329841	NM_182586	HPRD:08158	FLJ33534	-	uncharacterized LOC285150	ncRNA
19-PTNLD28-TUMOR_peak_13654	chr10	53993170	53993397	+	11.73320	NA	intron (NM_006258, intron 9 of 17)	L1PA2|LINE|L1	80605	NR_038277	100506939	Hs.584791	NR_038277		PRKG1-AS1	-	PRKG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83817	chr5	169230656	169230796	+	11.73320	NA	intron (NM_004946, intron 26 of 51)	intron (NM_004946, intron 26 of 51)	166475	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_26304	chr12	111284737	111284997	+	11.73320	NA	5' UTR (NM_152591, exon 1 of 12)	5' UTR (NM_152591, exon 1 of 12)	103	NM_152591	160762	Hs.437141	NM_152591	HPRD:08765	CCDC63	ODA5	coiled-coil domain containing 63	protein-coding
19-PTNLD28-TUMOR_peak_29938	chr14	36538789	36539006	+	11.72663	NA	promoter-TSS (NR_073454)	promoter-TSS (NR_073454)	-736	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_74944	chr4	37978902	37979238	+	11.72663	NA	intron (NM_001253912, intron 2 of 20)	CpG	17014	NM_006607	10744	Hs.668806	NM_006607	HPRD:09176	PTTG2	-	pituitary tumor-transforming 2	protein-coding
19-PTNLD28-TUMOR_peak_80260	chr5	64399127	64399318	+	11.72663	NA	Intergenic	Intergenic	334477	NM_001297644	10283	Hs.371372	NM_005869	HPRD:11541	CWC27	NY-CO-10|SDCCAG10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_50489	chr19	57781048	57781202	+	11.72663	NA	Intergenic	MER74B|LTR|ERVL	-10728	NM_006635	10794	Hs.99971	NM_006635	HPRD:06885	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
19-PTNLD28-TUMOR_peak_83173	chr5	149535200	149535499	+	11.72663	NA	promoter-TSS (NM_002609)	promoter-TSS (NM_002609)	73	NM_002609	5159	Hs.509067	NM_002609	HPRD:01423	PDGFRB	CD140B|IBGC4|IMF1|JTK12|PDGFR|PDGFR-1|PDGFR1	platelet-derived growth factor receptor, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_19236	chr11	65042601	65042972	+	11.72663	NA	intron (NM_002689, intron 4 of 17)	intron (NM_002689, intron 4 of 17)	13354	NM_002689	23649	Hs.201897	NM_002689		POLA2	-	polymerase (DNA directed), alpha 2, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_4415	chr1	77294832	77294990	+	11.72663	NA	Intergenic	Intergenic	-38275	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_9765	chr1	206762585	206762732	+	11.72663	NA	TTS (NM_182665)	TTS (NM_182665)	23246	NM_006893	1939	Hs.497581	NM_006893	HPRD:01057	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
19-PTNLD28-TUMOR_peak_44032	chr17	79894942	79895545	+	11.72663	NA	promoter-TSS (NM_001282281)	promoter-TSS (NM_001282281)	-39	NM_001282279	5831	Hs.163451	NM_006907	HPRD:01528	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_17153	chr11	11285276	11285422	+	11.72663	NA	Intergenic	Intergenic	89555	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_73958	chr4	3269947	3270250	+	11.72663	NA	Intergenic	Intergenic	19331	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64695	chr22	23881857	23882032	+	11.72663	NA	Intergenic	HERVK-int|LTR|ERVK	40551	NM_152855	3543	Hs.348935	NM_020070	HPRD:00905	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda-like polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_105764	chr9	121931794	121932042	+	11.72663	NA	intron (NM_014618, intron 7 of 7)	L1PA2|LINE|L1	199821	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_102922	chr9	36136508	36136920	+	11.72457	NA	promoter-TSS (NM_001287013)	promoter-TSS (NM_001287013)	-68	NM_001287014	152007	Hs.493819	NM_022343	HPRD:06187	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
19-PTNLD28-TUMOR_peak_57190	chr2	178499696	178499863	+	11.72457	NA	intron (NM_001077197, intron 20 of 20)	L3|LINE|CR1	-16085	NM_152275	92104	Hs.128384	NM_152275		TTC30A	-	tetratricopeptide repeat domain 30A	protein-coding
19-PTNLD28-TUMOR_peak_107633	chrX	15354228	15354415	+	11.72457	NA	promoter-TSS (NM_002641)	promoter-TSS (NM_002641)	-645	NR_033836	5277	Hs.137154	NM_002641	HPRD:02410	PIGA	GPI3|MCAHS2|PIG-A|PNH1	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding
19-PTNLD28-TUMOR_peak_96063	chr7	143317205	143317458	+	11.72141	NA	promoter-TSS (NM_001130025)	promoter-TSS (NM_001130025)	-714	NM_001130025	285966	Hs.743565	NM_173678	HPRD:07117	FAM115C	FAM139A	family with sequence similarity 115, member C	protein-coding
19-PTNLD28-TUMOR_peak_49728	chr19	49137962	49138083	+	11.72106	NA	intron (NM_001352, intron 2 of 3)	intron (NM_001352, intron 2 of 3)	2785	NM_001352	1628	Hs.414480	NM_001352		DBP	DABP	D site of albumin promoter (albumin D-box) binding protein	protein-coding
19-PTNLD28-TUMOR_peak_41623	chr17	41494620	41495081	+	11.72043	NA	Intergenic	Intergenic	18497	NM_001661	379	Hs.183153	NM_001661	HPRD:02842	ARL4D	ARF4L|ARL6	ADP-ribosylation factor-like 4D	protein-coding
19-PTNLD28-TUMOR_peak_49692	chr19	48893945	48894270	+	11.72043	NA	intron (NM_006801, intron 1 of 4)	intron (NM_006801, intron 1 of 4)	703	NM_006801	10945	Hs.515515	NM_006801	HPRD:00569	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_15380	chr10	104535763	104535978	+	11.72043	NA	promoter-TSS (NM_017787)	promoter-TSS (NM_017787)	-18	NM_017787	54838	Hs.500897	NM_017787	HPRD:12567	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_86359	chr6	28911399	28911567	+	11.71891	NA	promoter-TSS (NR_103538).5	promoter-TSS (NR_103538).5	-78	NR_103538	729583	Hs.453549	NR_103538		C6orf100	dJ25J6.5	chromosome 6 open reading frame 100	ncRNA
19-PTNLD28-TUMOR_peak_18017	chr11	34655678	34655872	+	11.71674	NA	intron (NM_001206616, intron 1 of 8)	intron (NM_001206616, intron 1 of 8)	1764	NM_001206616	26298	Hs.653859	NM_012153		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
19-PTNLD28-TUMOR_peak_86791	chr6	33048082	33048253	+	11.71670	NA	intron (NM_002121, intron 1 of 5)	intron (NM_002121, intron 1 of 5)	388	NM_001242524	3113	Hs.347270	NM_033554	HPRD:00835	HLA-DPA1	DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_64055	chr21	46850917	46851243	+	11.71670	NA	intron (NM_130445, intron 2 of 42)	intron (NM_130445, intron 2 of 42)	-6095	NR_027498	378832	Hs.517353	NM_199175	HPRD:10736	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_838	chr1	12291064	12291529	+	11.70851	NA	intron (NM_015378, intron 1 of 69)	intron (NM_015378, intron 1 of 69)	1183	NM_018156	55187	Hs.439381	NM_015378	HPRD:10593	VPS13D	-	vacuolar protein sorting 13 homolog D (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_64507	chr22	21361332	21361499	+	11.70851	NA	intron (NR_027051, intron 1 of 1)	AluJb|SINE|Alu	-5011	NM_030573	80764	Hs.512756	NM_030573	HPRD:15500	THAP7	-	THAP domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_29882	chr14	35188081	35188224	+	11.70851	NA	Intergenic	Intergenic	-4123	NM_138638	1073	Hs.180141	NM_021914	HPRD:03262	CFL2	NEM7	cofilin 2 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_84615	chr5	180747005	180747222	+	11.70629	NA	Intergenic	Intergenic	-3394	NR_028325	100132062	Hs.722350	NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
19-PTNLD28-TUMOR_peak_39641	chr17	1618594	1618815	+	11.70589	NA	intron (NR_028504, intron 1 of 3)	intron (NR_028504, intron 1 of 3)	862	NR_028505	84981	Hs.597755	NM_032895	HPRD:17497	MIR22HG	C17orf91	MIR22 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_91100	chr7	5603258	5603443	+	11.70420	NA	Intergenic	Intergenic	-29086	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_74201	chr4	6774958	6775120	+	11.70118	NA	Intergenic	Intergenic	-9420	NM_001100590	9778	Hs.79276	NM_014743	HPRD:11070	KIAA0232	-	KIAA0232	protein-coding
19-PTNLD28-TUMOR_peak_22648	chr12	5297787	5297993	+	11.69737	NA	Intergenic	Intergenic	51388	NR_120476	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA
19-PTNLD28-TUMOR_peak_94344	chr7	100391688	100391850	+	11.69737	NA	exon (NM_003386, exon 44 of 48)	exon (NM_003386, exon 44 of 48)	33374	NM_004444	2050	Hs.437008	NM_004444	HPRD:02481	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
19-PTNLD28-TUMOR_peak_24211	chr12	51008038	51008257	+	11.69737	NA	intron (NM_173602, intron 1 of 37)	L2|LINE|L2	109379	NM_173602	57609	Hs.505516	NM_020849	HPRD:08751	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_3915	chr1	61275029	61275209	+	11.69737	NA	intron (NR_110628, intron 1 of 5)	MIRb|SINE|MIR	16137	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_100020	chr8	107512464	107512718	+	11.69737	NA	intron (NM_001198532, intron 1 of 15)	LTR2B|LTR|ERV1	52439	NM_001198532	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_55057	chr2	113716539	113716640	+	11.69737	NA	Intergenic	MER20|DNA|hAT-Charlie	-19007	NM_001278568	56300	Hs.211238	NM_019618	HPRD:05707	IL36G	IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2	interleukin 36, gamma	protein-coding
19-PTNLD28-TUMOR_peak_37092	chr16	29106153	29106319	+	11.69737	NA	intron (NR_003369, intron 10 of 16)	intron (NR_003369, intron 10 of 16)	20073	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_54986	chr2	112684453	112684824	+	11.69737	NA	intron (NM_006343, intron 1 of 18)	intron (NM_006343, intron 1 of 18)	28447	NM_006343	10461	Hs.306178	NM_006343	HPRD:05269	MERTK	MER|RP38|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_26297	chr12	111106952	111107084	+	11.69625	NA	intron (NM_001256413, intron 2 of 6)	L2b|LINE|L2	19944	NM_032369	84329	Hs.211511	NM_032369	HPRD:17507	HVCN1	HV1|VSOP	hydrogen voltage-gated channel 1	protein-coding
19-PTNLD28-TUMOR_peak_109333	chrX	119619741	119620228	+	11.69625	NA	Intergenic	Intergenic	-16780	NM_013995	3920	Hs.496684	NM_002294	HPRD:02396	LAMP2	CD107b|LAMP-2|LAMPB|LGP110	lysosomal-associated membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_43826	chr17	77389435	77389624	+	11.69625	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	122701	NM_001082575	146713	Hs.135229	NM_001025448	HPRD:18730	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
19-PTNLD28-TUMOR_peak_24273	chr12	52250082	52250236	+	11.69625	NA	Intergenic	MIR|SINE|MIR	-24458	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_97970	chr8	29412908	29413217	+	11.69625	NA	Intergenic	Intergenic	192563	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_109622	chrX	138287091	138287537	+	11.69625	NA	promoter-TSS (NM_001139498)	promoter-TSS (NM_001139498)	-129	NM_001139500	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_60603	chr20	32391776	32392098	+	11.69625	NA	intron (NR_110623, intron 1 of 3)	intron (NR_110623, intron 1 of 3)	6968	NR_110623	101929746	Hs.504633	NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10815	chr1	231053650	231053748	+	11.69625	NA	intron (NM_024525, intron 17 of 22)	intron (NM_024525, intron 17 of 22)	43107	NR_110681	101927604	Hs.638929	NR_110681	ENSG00000223393	LOC101927604	-	uncharacterized LOC101927604	ncRNA
19-PTNLD28-TUMOR_peak_105545	chr9	116444681	116445034	+	11.69625	NA	Intergenic	Intergenic	88423	NM_001276262	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_29169	chr13	114065214	114065443	+	11.69625	NA	Intergenic	Intergenic	38129	NM_199162	113622	Hs.98669	NM_138430	HPRD:12431	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
19-PTNLD28-TUMOR_peak_14135	chr10	72394476	72394641	+	11.69625	NA	Intergenic	LTR10F|LTR|ERV1	-32027	NM_005041	5551	Hs.2200	NM_005041	HPRD:01362	PRF1	FLH2|HPLH2|P1|PFN1|PFP	perforin 1 (pore forming protein)	protein-coding
19-PTNLD28-TUMOR_peak_102490	chr9	22159097	22159276	+	11.69625	NA	Intergenic	Intergenic	-149874	NM_078487	1030	Hs.72901	NM_004936	HPRD:02696	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_15559	chr10	110983779	110983956	+	11.69625	NA	intron (NR_046928, intron 2 of 2)	L1PA2|LINE|L1	53452	NR_046928	100873762		NR_046928		RNU6-53P	RNU6-53	RNA, U6 small nuclear 53, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_88440	chr6	79519936	79520091	+	11.69625	NA	Intergenic	Intergenic	-57248	NM_001010844	134728	Hs.656212	NM_001010844	HPRD:17157	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2959	chr1	43500127	43500329	+	11.69625	NA	Intergenic	Intergenic	-75381	NM_006516	6513	Hs.473721	NM_006516	HPRD:00683	SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_38961	chr16	81327642	81327830	+	11.69625	NA	Intergenic	Intergenic	-20835	NM_022041	8139	Hs.112569	NM_022041		GAN	GAN1|KLHL16	gigaxonin	protein-coding
19-PTNLD28-TUMOR_peak_4581	chr1	85219300	85219469	+	11.69625	NA	Intergenic	Intergenic	-63144	NM_014021	117178	Hs.22587	NM_014021	HPRD:10566	SSX2IP	ADIP	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_50117	chr19	52734395	52734599	+	11.69625	NA	Intergenic	Intergenic	9224	NR_106859	102466984		NR_106859		MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
19-PTNLD28-TUMOR_peak_58534	chr2	220717039	220717178	+	11.69625	NA	Intergenic	Intergenic	54178	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_13320	chr10	46096363	46096864	+	11.69625	NA	Intergenic	LTR12C|LTR|ERV1	-6259	NM_145021	220972	Hs.499489	NM_145021	HPRD:17466	MARCH8	MARCH-VIII|MIR|RNF178|c-MIR	membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_73824	chr4	1345738	1345875	+	11.69603	NA	intron (NM_020894, intron 4 of 13)	intron (NM_020894, intron 4 of 13)	4702	NM_020894	57654	Hs.380475	NM_020894	HPRD:17216	UVSSA	KIAA1530|UVSS3	UV-stimulated scaffold protein A	protein-coding
19-PTNLD28-TUMOR_peak_42518	chr17	55957522	55957677	+	11.69603	NA	intron (NM_001292025, intron 2 of 10)	L1ME3A|LINE|L1	23151	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_21150	chr11	111847970	111848335	+	11.69321	NA	5' UTR (NM_033425, exon 1 of 16)	5' UTR (NM_033425, exon 1 of 16)	119	NM_033425	85458	Hs.655626	NM_033425	HPRD:16804	DIXDC1	CCD1	DIX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_106705	chr9	138662055	138662323	+	11.69321	NA	exon (NM_020822, exon 17 of 31)	exon (NM_020822, exon 17 of 31)	68158	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	potassium channel, subfamily T, member 1	protein-coding
19-PTNLD28-TUMOR_peak_18046	chr11	35160526	35160706	+	11.69321	NA	5' UTR (NM_001001390, exon 1 of 12)	5' UTR (NM_001001390, exon 1 of 12)	199	NM_001202556	960	Hs.502328	NM_000610	HPRD:00115	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
19-PTNLD28-TUMOR_peak_61768	chr20	48802853	48803034	+	11.69114	NA	non-coding (NR_125739, exon 7 of 7)	non-coding (NR_125739, exon 7 of 7)	-4177	NM_001285878	1051	Hs.517106	NM_005194	HPRD:01801	CEBPB	C/EBP-beta|CRP2|IL6DBP|NF-IL6|TCF5	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding
19-PTNLD28-TUMOR_peak_16752	chr11	3498852	3499019	+	11.69092	NA	Intergenic	HERVE-int|LTR|ERV1	-85790	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64272	chr22	18561029	18561415	+	11.69092	NA	exon (NM_001199319, exon 2 of 5)	exon (NM_001199319, exon 2 of 5)	462	NM_001127649	55670	Hs.517400	NM_017929		PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
19-PTNLD28-TUMOR_peak_62067	chr20	52361181	52361392	+	11.69038	NA	Intergenic	Intergenic	130962	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40050	chr17	8022100	8022276	+	11.69038	NA	promoter-TSS (NM_001165960)	promoter-TSS (NM_001165960)	46	NM_001165960	59344	Hs.232770	NM_021628	HPRD:06231	ALOXE3	ARCI3|E-LOX|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_14059	chr10	71444198	71444375	+	11.68388	NA	Intergenic	Intergenic	54283	NM_145306	219738	Hs.522992	NM_145306	HPRD:12573	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
19-PTNLD28-TUMOR_peak_12233	chr10	17878989	17879135	+	11.68275	NA	intron (NM_002438, intron 4 of 29)	intron (NM_002438, intron 4 of 29)	-8045	NR_030167	574445		NR_030167		MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2	microRNA 511	ncRNA
19-PTNLD28-TUMOR_peak_3165	chr1	46009583	46009805	+	11.68275	NA	Intergenic	Intergenic	-6761	NM_006066	10327	Hs.474584	NM_006066	HPRD:00069	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding
19-PTNLD28-TUMOR_peak_103573	chr9	69631569	69631672	+	11.68275	NA	Intergenic	AluSc|SINE|Alu	-19741	NR_024443	100133920	Hs.645503	NR_024443		LOC100133920	-	uncharacterized LOC100133920	ncRNA
19-PTNLD28-TUMOR_peak_71924	chr3	156788467	156788707	+	11.68275	NA	Intergenic	Intergenic	-19083	NR_034008	100498859	Hs.633655	NR_034008	ENSG00000241135	LINC00881	-	long intergenic non-protein coding RNA 881	ncRNA
19-PTNLD28-TUMOR_peak_44888	chr18	20789077	20789210	+	11.68275	NA	intron (NR_023359, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	53354	NM_138375	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_56971	chr2	172986338	172986499	+	11.68275	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-18940	NM_004405	1746	Hs.419	NM_004405	HPRD:00527	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_32101	chr14	102227683	102227894	+	11.68275	NA	promoter-TSS (NM_001161726)	promoter-TSS (NM_001161726)	-347	NM_001161726	5527	Hs.368264	NM_002719	HPRD:03385	PPP2R5C	B56G|PR61G	protein phosphatase 2, regulatory subunit B', gamma	protein-coding
19-PTNLD28-TUMOR_peak_73522	chr3	195622971	195623173	+	11.68219	NA	promoter-TSS (NM_001010938)	promoter-TSS (NM_001010938)	-640	NM_001010938	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_49940	chr19	50703360	50703502	+	11.68096	NA	Intergenic	Intergenic	-3454	NM_024729	79784	Hs.467142	NM_024729	HPRD:10543	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin, heavy chain 14, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_43849	chr17	77899537	77899709	+	11.68096	NA	non-coding (NR_110850, exon 1 of 6)	non-coding (NR_110850, exon 1 of 6)	901	NR_110850	101928766	Hs.630666	NR_110850	ENSG00000262585	LOC101928766	-	uncharacterized LOC101928766	ncRNA
19-PTNLD28-TUMOR_peak_86674	chr6	31838400	31838775	+	11.67766	NA	intron (NM_001178045, intron 10 of 20).7	intron (NM_001178045, intron 10 of 20).7	6861	NM_001178045	80736	Hs.335355	NM_025257	HPRD:12087	SLC44A4	C6orf29|CTL4|NG22|TPPT	solute carrier family 44, member 4	protein-coding
19-PTNLD28-TUMOR_peak_105000	chr9	102971947	102972097	+	11.67766	NA	intron (NM_014425, intron 3 of 16)	AluY|SINE|Alu	110520	NR_051962	27130	Hs.558477	NM_014425	HPRD:08356	INVS	INV|NPH2|NPHP2	inversin	protein-coding
19-PTNLD28-TUMOR_peak_8032	chr1	168106515	168106679	+	11.67766	NA	promoter-TSS (NM_001267612)	promoter-TSS (NM_001267612)	214	NM_001267614	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_10574	chr1	227951630	227952171	+	11.67766	NA	intron (NM_053052, intron 3 of 4)	intron (NM_053052, intron 3 of 4)	-28788	NM_001161465	65094	Hs.555974	NM_023007	HPRD:07774	JMJD4	-	jumonji domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_60936	chr20	36763154	36763288	+	11.67665	NA	intron (NM_004613, intron 10 of 12)	intron (NM_004613, intron 10 of 12)	30479	NM_004613	7052	Hs.517033	NM_004613	HPRD:01825	TGM2	G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC	transglutaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_103280	chr9	44334790	44335044	+	11.67665	NA	Intergenic	TAR1|Satellite|telo	-49668	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_268	chr1	3081907	3082314	+	11.67665	NA	intron (NM_022114, intron 1 of 16)	intron (NM_022114, intron 1 of 16)	37571	NR_036215	100422968		NR_036215		MIR4251	-	microRNA 4251	ncRNA
19-PTNLD28-TUMOR_peak_92900	chr7	65259782	65259969	+	11.67665	NA	Intergenic	L2a|LINE|L2	-24078	NR_038378	441242	Hs.373941	NM_001013464		LOC441242	-	uncharacterized LOC441242	ncRNA
19-PTNLD28-TUMOR_peak_102012	chr9	4126302	4126471	+	11.67665	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	25797	NM_152629	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_93757	chr7	84964436	84964708	+	11.67665	NA	Intergenic	L1PA2|LINE|L1	-213325	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_106414	chr9	132816123	132816333	+	11.67665	NA	exon (NM_001136558, exon 1 of 19)	exon (NM_001136558, exon 1 of 19)	243	NM_020960	57720	Hs.512461	NM_020960	HPRD:17054	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
19-PTNLD28-TUMOR_peak_92360	chr7	45893992	45894116	+	11.67665	NA	Intergenic	Intergenic	-33905	NM_000596	3484	Hs.642938	NM_000596	HPRD:00897	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin-like growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_31361	chr14	76187232	76187564	+	11.67665	NA	intron (NM_015072, intron 12 of 31)	intron (NM_015072, intron 12 of 31)	59847	NM_015072	23093	Hs.709609	NM_015072	HPRD:08309	TTLL5	CORD19|KIAA0998|STAMP	tubulin tyrosine ligase-like family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_39062	chr16	84118522	84118633	+	11.67665	NA	intron (NM_003791, intron 10 of 22)	intron (NM_003791, intron 10 of 22)	31971	NM_003791	8720	Hs.75890	NM_003791	HPRD:04522	MBTPS1	PCSK8|S1P|SKI-1	membrane-bound transcription factor peptidase, site 1	protein-coding
19-PTNLD28-TUMOR_peak_90855	chr7	1619202	1619386	+	11.67665	NA	intron (NR_027328, intron 3 of 3)	intron (NR_027328, intron 3 of 3)	9585	NR_021487	114796	Hs.436146	NR_021487	ENSG00000230487	PSMG3-AS1	-	PSMG3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_15654	chr10	113343846	113343974	+	11.67665	NA	Intergenic	L1PA2|LINE|L1	507120	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_36322	chr16	11876783	11877094	+	11.67665	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	14176	NM_014153	29066	Hs.371856	NM_014153	HPRD:11694	ZC3H7A	ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
19-PTNLD28-TUMOR_peak_27148	chr12	128998870	128999035	+	11.67665	NA	intron (NM_001136103, intron 2 of 8)	MIR|SINE|MIR	220315	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_72556	chr3	178453825	178453971	+	11.67665	NA	intron (NM_001278911, intron 1 of 4)	MIRc|SINE|MIR	177410	NM_001278911	10242	Hs.478368	NM_005832	HPRD:05557	KCNMB2	-	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_37002	chr16	28054317	28054485	+	11.67665	NA	intron (NM_001109763, intron 1 of 6)	intron (NM_001109763, intron 1 of 6)	20429	NM_001109763	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_30330	chr14	53417113	53417345	+	11.67576	NA	exon (NM_001134999, exon 2 of 16)	exon (NM_001134999, exon 2 of 16)	586	NM_001134999	10979	Hs.509343	NM_006832	HPRD:06374	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
19-PTNLD28-TUMOR_peak_43657	chr17	75446547	75446828	+	11.67576	NA	promoter-TSS (NM_001113496)	promoter-TSS (NM_001113496)	74	NM_001113496	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_13364	chr10	46992836	46993128	+	11.67576	NA	promoter-TSS (NM_014696)	promoter-TSS (NM_014696)	-564	NM_014696	9721	Hs.523375	NM_014696		GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
19-PTNLD28-TUMOR_peak_17344	chr11	13950370	13950493	+	11.67576	NA	Intergenic	MIR|SINE|MIR	-33753	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_49205	chr19	42462038	42462200	+	11.67576	NA	intron (NM_006423, intron 3 of 4)	intron (NM_006423, intron 3 of 4)	1409	NM_006423	10567	Hs.11417	NM_006423	HPRD:05375	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1 (prenylated)	protein-coding
19-PTNLD28-TUMOR_peak_1221	chr1	19639123	19639333	+	11.67576	NA	promoter-TSS (NM_003689)	promoter-TSS (NM_003689)	488	NM_001040125	54896	Hs.647620	NM_017765	HPRD:17896	PQLC2	-	PQ loop repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_6290	chr1	145304829	145305090	+	11.67357	NA	intron (NM_001039703, intron 10 of 85)	intron (NM_001039703, intron 10 of 85)	11588	NM_001039703	100132406	Hs.714127	NM_001039703	ENSG00000163386	NBPF10	AB6|AG1|NBPF9	neuroblastoma breakpoint family, member 10	protein-coding
19-PTNLD28-TUMOR_peak_22861	chr12	7283827	7283948	+	11.66885	NA	intron (NM_014718, intron 1 of 17)	intron (NM_014718, intron 1 of 17)	920	NM_014718	9746	Hs.535378	NM_014718	HPRD:16725	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
19-PTNLD28-TUMOR_peak_18758	chr11	59318488	59318751	+	11.66577	NA	Intergenic	Intergenic	36233	NM_001004711	390199	Hs.553757	NM_001004711	HPRD:17728	OR4D9	OR11-253	olfactory receptor, family 4, subfamily D, member 9	protein-coding
19-PTNLD28-TUMOR_peak_26964	chr12	124876978	124877179	+	11.66211	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-55290	NR_106940	102466204		NR_106940		MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
19-PTNLD28-TUMOR_peak_41201	chr17	36284002	36284162	+	11.66211	NA	promoter-TSS (NM_001123391)	promoter-TSS (NM_001123391)	63	NM_001291466	102723859	Hs.454716	NM_001291466		LOC102723859	-	TBC1 domain family member-like	protein-coding
19-PTNLD28-TUMOR_peak_85116	chr6	6883352	6883452	+	11.65729	NA	Intergenic	L2c|LINE|L2	-224428	NM_001168344	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_72391	chr3	172364452	172364583	+	11.65617	NA	intron (NM_001146278, intron 1 of 3)	intron (NM_001146278, intron 1 of 3)	64491	NM_001146278	57552	Hs.444099	NM_020792	HPRD:07489	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_73378	chr3	194241570	194241834	+	11.65369	NA	Intergenic	THE1B|LTR|ERVL-MaLR	33833	NR_033929	401106	Hs.407087	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA
19-PTNLD28-TUMOR_peak_37256	chr16	30662660	30662842	+	11.65369	NA	intron (NM_024031, intron 1 of 11)	CpG	510	NM_024031	78994	Hs.293629	NM_024031	HPRD:14541	PRR14	-	proline rich 14	protein-coding
19-PTNLD28-TUMOR_peak_50809	chr2	1725081	1725274	+	11.65367	NA	intron (NM_012293, intron 1 of 22)	intron (NM_012293, intron 1 of 22)	23142	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44993	chr18	24005181	24005424	+	11.65348	NA	intron (NR_110762, intron 2 of 3)	intron (NR_110762, intron 2 of 3)	2343	NR_110762	100506787	Hs.734746	NR_110762		LOC100506787	-	uncharacterized LOC100506787	ncRNA
19-PTNLD28-TUMOR_peak_23648	chr12	31889493	31889603	+	11.65348	NA	Intergenic	AluJr|SINE|Alu	-7440	NM_001278412	196394	Hs.585084	NM_001113402	HPRD:14115	AMN1	-	antagonist of mitotic exit network 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61782	chr20	48868604	48868773	+	11.65348	NA	Intergenic	L2b|LINE|L2	-15335	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
19-PTNLD28-TUMOR_peak_19013	chr11	62448378	62448516	+	11.65348	NA	Intergenic	Intergenic	-1858	NM_001286077	51035	Hs.351296	NM_015853	HPRD:11266	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79641	chr5	40688368	40688485	+	11.64898	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	8394	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_45998	chr18	57169241	57169386	+	11.64898	NA	intron (NM_133459, intron 2 of 10)	AluJo|SINE|Alu	-142805	NM_005570	3998	Hs.465295	NM_005570	HPRD:03338	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose-binding, 1	protein-coding
19-PTNLD28-TUMOR_peak_96067	chr7	143397956	143398203	+	11.64898	NA	intron (NM_173678, intron 1 of 6)	intron (NM_173678, intron 1 of 6)	-14860	NM_001130026	285966	Hs.743565	NM_173678	HPRD:07117	FAM115C	FAM139A	family with sequence similarity 115, member C	protein-coding
19-PTNLD28-TUMOR_peak_60177	chr20	22791731	22791974	+	11.64898	NA	Intergenic	Intergenic	-203697	NR_109883	101929685	Hs.563018	NR_109883		LINC01384	-	long intergenic non-protein coding RNA 1384	ncRNA
19-PTNLD28-TUMOR_peak_38124	chr16	58443297	58443599	+	11.64898	NA	Intergenic	Intergenic	17150	NM_022770	64785	Hs.47125	NM_022770	HPRD:07842	GINS3	PSF3	GINS complex subunit 3 (Psf3 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_108916	chrX	92929141	92929286	+	11.64898	NA	promoter-TSS (NM_004538)	promoter-TSS (NM_004538)	201	NM_001171111	286499	Hs.110069	NM_173698	HPRD:06562	FAM133A	CT115	family with sequence similarity 133, member A	protein-coding
19-PTNLD28-TUMOR_peak_70053	chr3	119528973	119529252	+	11.64898	NA	intron (NM_033013, intron 3 of 8)	CpG	27555	NM_022002	8856	Hs.7303	NM_003889	HPRD:04346	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1, group I, member 2	protein-coding
19-PTNLD28-TUMOR_peak_51909	chr2	29742242	29742362	+	11.64898	NA	intron (NM_004304, intron 4 of 28)	intron (NM_004304, intron 4 of 28)	402175	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_46621	chr19	1914114	1914541	+	11.64898	NA	TTS (NM_138422)	TTS (NM_138422)	8954	NM_079834	113178	Hs.144980	NM_079834	HPRD:11536	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_10438	chr1	225854386	225854552	+	11.64898	NA	Intergenic	Intergenic	-13624	NM_018212	55740	Hs.497893	NM_018212	HPRD:12360	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_64460	chr22	20785383	20785497	+	11.64898	NA	exon (NM_153334, exon 4 of 12)	exon (NM_153334, exon 4 of 12)	6706	NM_182895	91179	Hs.474251	NM_153334	HPRD:15299	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_59939	chr20	16453180	16453408	+	11.64898	NA	intron (NM_024704, intron 12 of 25)	intron (NM_024704, intron 12 of 25)	100785	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_95557	chr7	135282032	135282175	+	11.64768	NA	intron (NM_015135, intron 13 of 42)	intron (NM_015135, intron 13 of 42)	39441	NM_015135	23165	Hs.743250	NM_015135	HPRD:17653	NUP205	C7orf14	nucleoporin 205kDa	protein-coding
19-PTNLD28-TUMOR_peak_27904	chr13	40318621	40318761	+	11.64768	NA	intron (NM_001145079, intron 18 of 18)	L1PA6|LINE|L1	-80419	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_65508	chr22	38820178	38820376	+	11.64768	NA	Intergenic	Intergenic	19756	NM_004981	3761	Hs.32505	NM_004981	HPRD:02738	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding
19-PTNLD28-TUMOR_peak_97032	chr8	8163489	8163661	+	11.64768	NA	Intergenic	Intergenic	75769	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_33136	chr15	40339189	40339320	+	11.64768	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	7742	NR_040059	100131089	Hs.386000	NR_040059	ENSG00000248508	SRP14-AS1	-	SRP14 antisense RNA1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_9402	chr1	203155333	203155464	+	11.64727	NA	intron (NM_001276, intron 2 of 9)	intron (NM_001276, intron 2 of 9)	524	NM_001276	1116	Hs.382202	NM_001276	HPRD:03314	CHI3L1	ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YKL-40|YKL40|YYL-40|hCGP-39	chitinase 3-like 1 (cartilage glycoprotein-39)	protein-coding
19-PTNLD28-TUMOR_peak_24426	chr12	53359174	53359375	+	11.64674	NA	Intergenic	CpG	-15624	NM_001256293	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_41594	chr17	41324008	41324276	+	11.64674	NA	intron (NM_001291572, intron 1 of 17)	intron (NM_001291572, intron 1 of 17)	1155	NM_001291571	4077	Hs.277721	NM_005899	HPRD:01326	NBR1	1A1-3B|IAI3B|M17S2	neighbor of BRCA1 gene 1	protein-coding
19-PTNLD28-TUMOR_peak_6058	chr1	121143336	121143512	+	11.64674	NA	Intergenic	L1PA3|LINE|L1	-3659	NR_104189	100873165	Hs.568525	NR_104189		SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_50442	chr19	56631747	56631949	+	11.64500	NA	intron (NM_001002836, intron 1 of 2)	CpG	894	NM_001002836	126208	Hs.397153	NM_001002836	HPRD:14032	ZNF787	TIP20	zinc finger protein 787	protein-coding
19-PTNLD28-TUMOR_peak_3647	chr1	54887006	54887197	+	11.64203	NA	Intergenic	Intergenic	-15033	NM_018070	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_54927	chr2	111934064	111934217	+	11.64203	NA	Intergenic	Intergenic	55649	NM_001204111	10018	Hs.469658	NM_006538	HPRD:04828	BCL2L11	BAM|BIM|BOD	BCL2-like 11 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_60966	chr20	37239313	37239467	+	11.64203	NA	intron (NM_001164431, intron 1 of 14)	intron (NM_001164431, intron 1 of 14)	8813	NM_001164431	343578	Hs.451997	NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
19-PTNLD28-TUMOR_peak_91576	chr7	22599579	22599727	+	11.64203	NA	Intergenic	Intergenic	-3303	NR_038393	100506178	Hs.668122	NR_038393	ENSG00000232759	LOC100506178	-	uncharacterized LOC100506178	ncRNA
19-PTNLD28-TUMOR_peak_25628	chr12	94955882	94956168	+	11.64203	NA	TTS (NR_049885)	TTS (NR_049885)	460	NR_049885	100847031		NR_049885	miRBase:MI0019307	MIR5700	-	microRNA 5700	ncRNA
19-PTNLD28-TUMOR_peak_67756	chr3	43106758	43106856	+	11.64203	NA	Intergenic	L1PA2|LINE|L1	40768	NM_032806	84892	Hs.745002	NM_032806	HPRD:07863	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
19-PTNLD28-TUMOR_peak_87767	chr6	45898321	45898626	+	11.64203	NA	intron (NR_045673, intron 1 of 4)	(CAG)n|Simple_repeat|Simple_repeat	6861	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_88452	chr6	79926986	79927172	+	11.64203	NA	intron (NM_138730, intron 1 of 5)	MIRc|SINE|MIR	-16312	NR_040671	100288198	Hs.586270	NR_040671	ENSG00000270362	HMGN3-AS1	-	HMGN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_7038	chr1	154056521	154056636	+	11.64203	NA	intron (NM_207308, intron 16 of 39)	AluJb|SINE|Alu	71014	NM_001159484	91181	Hs.67639	NM_207308	HPRD:14852	NUP210L	-	nucleoporin 210kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_66543	chr3	10510111	10510253	+	11.64203	NA	intron (NM_001001331, intron 1 of 22)	intron (NM_001001331, intron 1 of 22)	37086	NM_001001331	491	Hs.268942	NM_001683	HPRD:00160	ATP2B2	PMCA2|PMCA2a|PMCA2i	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
19-PTNLD28-TUMOR_peak_6355	chr1	145918585	145918693	+	11.64203	NA	intron (NR_104217, intron 2 of 17).2	AluJo|SINE|Alu	26838	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_102967	chr9	36995938	36996097	+	11.64203	NA	intron (NM_001280553, intron 4 of 7)	intron (NM_001280553, intron 4 of 7)	38459	NM_001280548	5079	Hs.654464	NM_016734	HPRD:01334	PAX5	ALL3|BSAP	paired box 5	protein-coding
19-PTNLD28-TUMOR_peak_21191	chr11	112348012	112348154	+	11.64203	NA	Intergenic	Intergenic	-4872	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
19-PTNLD28-TUMOR_peak_24900	chr12	62335674	62335812	+	11.64203	NA	intron (NM_178539, intron 1 of 4)	L1PA2|LINE|L1	250877	NM_178539	338811	Hs.269745	NM_178539	HPRD:16876	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	protein-coding
19-PTNLD28-TUMOR_peak_21845	chr11	124406634	124406752	+	11.64203	NA	Intergenic	Intergenic	6857	NM_001005195	219858	Hs.553634	NM_001005195	HPRD:17785	OR8B12	OR11-317	olfactory receptor, family 8, subfamily B, member 12	protein-coding
19-PTNLD28-TUMOR_peak_744	chr1	11207567	11207796	+	11.64203	NA	intron (NM_004958, intron 31 of 57)	intron (NM_004958, intron 31 of 57)	3726	NR_046600	100873935	Hs.679133	NR_046600	ENSG00000225602	MTOR-AS1	-	MTOR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53503	chr2	73917951	73918066	+	11.64203	NA	Intergenic	Intergenic	10459	NM_016347	51471	Hs.278983	NM_016347		NAT8B	CML2|Hcml2|NAT8BP	N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_85288	chr6	10556150	10556503	+	11.64203	NA	5' UTR (NM_001491, exon 1 of 3)	5' UTR (NM_001491, exon 1 of 3)	377	NM_001491	2651	Hs.519884	NM_001491	HPRD:02695	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
19-PTNLD28-TUMOR_peak_44535	chr18	10182085	10182285	+	11.64203	NA	Intergenic	L1PBa1|LINE|L1	232182	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
19-PTNLD28-TUMOR_peak_79384	chr5	33148200	33148324	+	11.64203	NA	Intergenic	Intergenic	200713	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
19-PTNLD28-TUMOR_peak_102108	chr9	6218128	6218442	+	11.64203	NA	intron (NM_001199640, intron 1 of 6)	intron (NM_001199640, intron 1 of 6)	2499	NM_033439	90865	Hs.731660	NM_033439	HPRD:12275	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding
19-PTNLD28-TUMOR_peak_65786	chr22	43333555	43333733	+	11.64203	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	9403	NM_007229	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_36769	chr16	22013008	22013242	+	11.64203	NA	promoter-TSS (NM_173806)	promoter-TSS (NM_173806)	-694	NM_173806	255762	Hs.98244	NM_173806	HPRD:14667	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_66483	chr3	9862771	9862911	+	11.64203	NA	intron (NM_001025930, intron 7 of 12)	MER103C|DNA|hAT-Charlie	11197	NR_037162	26140	Hs.726435	NM_015644	HPRD:15585	TTLL3	HOTTL	tubulin tyrosine ligase-like family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_67759	chr3	43255262	43255441	+	11.64203	NA	Intergenic	L1M5|LINE|L1	-72653	NM_017719	54861	Hs.476052	NM_017719	HPRD:18082	SNRK	HSNFRK	SNF related kinase	protein-coding
19-PTNLD28-TUMOR_peak_88755	chr6	90807797	90808193	+	11.64203	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	198632	NM_021813	60468	Hs.269764	NM_021813	HPRD:12012	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_27191	chr12	131246406	131246574	+	11.64203	NA	Intergenic	Intergenic	77329	NM_194356	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_104021	chr9	80849879	80850019	+	11.64063	NA	Intergenic	Intergenic	-1042	NM_001098802	84131	Hs.374421	NM_032171	ENSG00000148019	CEP78	C9orf81|IP63	centrosomal protein 78kDa	protein-coding
19-PTNLD28-TUMOR_peak_37360	chr16	31484322	31484425	+	11.64063	NA	promoter-TSS (NM_015927)	promoter-TSS (NM_015927)	-153	NM_015927	7041	Hs.513530	NM_015927	HPRD:03831	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_23026	chr12	10766500	10766731	+	11.63944	NA	promoter-TSS (NM_018048)	promoter-TSS (NM_018048)	-407	NM_018048	55110	Hs.104650	NM_018048		MAGOHB	MGN2|mago|magoh	mago-nashi homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78265	chr4	184719115	184719725	+	11.63944	NA	Intergenic	CpG	-107089	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_60622	chr20	32657724	32657882	+	11.63944	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	20878	NR_039911	100616434		NR_039911	miRBase:MI0017395	MIR4755	-	microRNA 4755	ncRNA
19-PTNLD28-TUMOR_peak_38849	chr16	78605562	78605786	+	11.63944	NA	intron (NM_001291997, intron 7 of 7)	AluSz|SINE|Alu	472364	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_7573	chr1	160048529	160048660	+	11.63944	NA	Intergenic	Intergenic	-2766	NM_004983	3765	Hs.66726	NM_004983		KCNJ9	GIRK3|KIR3.3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding
19-PTNLD28-TUMOR_peak_5501	chr1	111173514	111173685	+	11.63944	NA	intron (NM_001204269, intron 1 of 4)	intron (NM_001204269, intron 1 of 4)	497	NM_001204269	3737	Hs.248139	NM_004974	HPRD:01443	KCNA2	HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_48418	chr19	30157765	30157879	+	11.63615	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	1495	NM_024310	79156	Hs.466383	NM_024310	HPRD:15146	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_54900	chr2	111371228	111371509	+	11.63256	NA	Intergenic	Intergenic	-35059	NM_032260	84220	Hs.469630	NM_005054	HPRD:04128	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_553	chr1	8938033	8938243	+	11.62950	NA	promoter-TSS (NR_038351)	promoter-TSS (NR_038351)	-756	NR_038351	100505975	Hs.429843	NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53780	chr2	85580980	85581295	+	11.62697	NA	promoter-TSS (NM_032213)	promoter-TSS (NM_032213)	684	NM_017750	54884	Hs.440401	NM_017750	HPRD:07893	RETSAT	-	retinol saturase (all-trans-retinol 13,14-reductase)	protein-coding
19-PTNLD28-TUMOR_peak_46503	chr19	679815	679952	+	11.62697	NA	intron (NM_005860, intron 2 of 4)	CpG	3494	NM_005860	10272	Hs.529038	NM_005860	HPRD:05632	FSTL3	FLRG|FSRP	follistatin-like 3 (secreted glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_34451	chr15	74275585	74275748	+	11.62439	NA	3' UTR (NM_001256677, exon 8 of 8)	3' UTR (NM_001256677, exon 8 of 8)	9023	NM_001256675	9399	Hs.194816	NM_004809	HPRD:16314	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96845	chr8	579738	580260	+	11.62439	NA	Intergenic	Intergenic	-84218	NM_175075	157695	Hs.289293	NM_175075	HPRD:13740	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
19-PTNLD28-TUMOR_peak_15009	chr10	97050695	97050870	+	11.62418	NA	5' UTR (NM_020992, exon 1 of 7)	5' UTR (NM_020992, exon 1 of 7)	123	NM_020992	9124	Hs.368525	NM_020992	HPRD:09326	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
19-PTNLD28-TUMOR_peak_39788	chr17	4268536	4268683	+	11.62418	NA	intron (NM_003342, intron 1 of 5)	intron (NM_003342, intron 1 of 5)	1360	NM_003342	7326	Hs.741319	NM_003342	HPRD:03340	UBE2G1	E217K|UBC7|UBE2G	ubiquitin-conjugating enzyme E2G 1	protein-coding
19-PTNLD28-TUMOR_peak_89965	chr6	150393457	150393627	+	11.62418	NA	Intergenic	Intergenic	-3340	NM_024518	79465	Hs.326556	NM_024518	HPRD:16144	ULBP3	RAET1N	UL16 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_92440	chr7	47592335	47592487	+	11.62418	NA	intron (NM_022748, intron 1 of 30)	Tigger1|DNA|TcMar-Tigger	29331	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_64103	chr21	47504717	47504939	+	11.62418	NA	Intergenic	Intergenic	-13205	NM_001849	1292	Hs.420269	NM_001849	HPRD:02110	COL6A2	PP3610	collagen, type VI, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_55829	chr2	133319969	133320118	+	11.62313	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	108438	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_11157	chr1	236657993	236658130	+	11.61780	NA	Intergenic	Intergenic	-23453	NM_201545	3964	Hs.4082	NM_006499	HPRD:09356	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	lectin, galactoside-binding, soluble, 8	protein-coding
19-PTNLD28-TUMOR_peak_96639	chr7	155436624	155436819	+	11.61780	NA	promoter-TSS (NM_053043)	promoter-TSS (NM_053043)	-482	NM_053043	155435	Hs.591815	NM_053043	HPRD:17310	RBM33	PRR8	RNA binding motif protein 33	protein-coding
19-PTNLD28-TUMOR_peak_108785	chrX	75365259	75365378	+	11.61572	NA	Intergenic	CpG	-27446	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49592	chr19	47814133	47814358	+	11.61572	NA	intron (NM_001736, intron 1 of 1)	intron (NM_001736, intron 1 of 1)	1141	NM_001736	728	Hs.2161	NM_001736	HPRD:00224	C5AR1	C5A|C5AR|C5R1|CD88	complement component 5a receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_22813	chr12	6938539	6938697	+	11.61503	NA	intron (NM_014262, intron 1 of 14)	CpG	1080	NM_014262	10536	Hs.631655	NM_014262	HPRD:10039	LEPREL2	GRCB|HSU47926|P3H3	leprecan-like 2	protein-coding
19-PTNLD28-TUMOR_peak_59072	chr2	238200110	238200342	+	11.61474	NA	Intergenic	Intergenic	122624	NM_057167	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_26955	chr12	124744347	124744572	+	11.61474	NA	intron (NM_001204299, intron 3 of 4)	intron (NM_001204299, intron 3 of 4)	-29251	NM_181709	144347	Hs.432901	NM_181709	HPRD:14066	FAM101A	CFM2	family with sequence similarity 101, member A	protein-coding
19-PTNLD28-TUMOR_peak_106543	chr9	135753637	135753821	+	11.61474	NA	promoter-TSS (NM_018956)	promoter-TSS (NM_018956)	469	NM_152572	158067	Hs.421340	NM_152572	HPRD:12991	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_40481	chr17	18635882	18636018	+	11.61474	NA	intron (NM_001037330, intron 4 of 4)	intron (NM_001037330, intron 4 of 4)	10548	NM_001037330	147166	Hs.164324	NM_001037330	HPRD:18731	TRIM16L	TRIM70	tripartite motif containing 16-like	protein-coding
19-PTNLD28-TUMOR_peak_74798	chr4	25427042	25427230	+	11.61474	NA	Intergenic	MIR|SINE|MIR	48288	NM_013367	29945	Hs.152173	NM_013367	HPRD:09505	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_39243	chr16	86266936	86267047	+	11.61474	NA	intron (NR_104139, intron 3 of 5)	L1PA3|LINE|L1	37204	NR_103859	100506542	Hs.111902	NR_103859	ENSG00000269186	LINC01082	TCONS_00024492	long intergenic non-protein coding RNA 1082	ncRNA
19-PTNLD28-TUMOR_peak_107652	chrX	16203866	16204035	+	11.61474	NA	Intergenic	Intergenic	18346	NM_001277307	645864	Hs.632792	NM_001277307	ENSG00000182798	MAGEB17	-	melanoma antigen family B, 17	protein-coding
19-PTNLD28-TUMOR_peak_96189	chr7	148869398	148869535	+	11.61474	NA	intron (NM_020781, intron 5 of 6)	Tigger7|DNA|TcMar-Tigger	-23111	NM_003575	8427	Hs.729056	NM_003575	HPRD:04549	ZNF282	HUB1	zinc finger protein 282	protein-coding
19-PTNLD28-TUMOR_peak_80276	chr5	65056841	65056982	+	11.61474	NA	intron (NM_020726, intron 2 of 12)	intron (NM_020726, intron 2 of 12)	38888	NM_020726	57486	Hs.247460	NM_020726	HPRD:07495	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin (metallopeptidase M3 family)	protein-coding
19-PTNLD28-TUMOR_peak_25088	chr12	67072744	67073012	+	11.61474	NA	promoter-TSS (NM_001178074)	promoter-TSS (NM_001178074)	47	NM_001178074	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68810	chr3	65469274	65469435	+	11.61474	NA	intron (NM_001033057, intron 3 of 22)	intron (NM_001033057, intron 3 of 22)	-410137	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_59777	chr20	10309179	10309540	+	11.61474	NA	Intergenic	AluY|SINE|Alu	103214	NM_018848	8195	Hs.472119	NM_018848	HPRD:05356	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
19-PTNLD28-TUMOR_peak_53267	chr2	68942637	68942786	+	11.61474	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-19202	NM_001007231	9938	Hs.531807	NM_014882	HPRD:09805	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
19-PTNLD28-TUMOR_peak_21025	chr11	108420603	108420845	+	11.61474	NA	intron (NM_015065, intron 1 of 5)	intron (NM_015065, intron 1 of 5)	43650	NM_015065	23086	Hs.28540	NM_015065	HPRD:08341	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
19-PTNLD28-TUMOR_peak_89151	chr6	112544278	112544396	+	11.61474	NA	intron (NM_001105206, intron 2 of 38)	intron (NM_001105206, intron 2 of 38)	-13460	NR_121193	101927640	Hs.510007	NR_121193		LOC101927640	-	uncharacterized LOC101927640	ncRNA
19-PTNLD28-TUMOR_peak_53186	chr2	66652884	66653224	+	11.61474	NA	non-coding (NR_046438, exon 4 of 4)	non-coding (NR_046438, exon 4 of 4)	7548	NR_046438	730198	Hs.526753	NR_046438		MEIS1-AS3	-	MEIS1 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_58790	chr2	231712682	231712823	+	11.61474	NA	Intergenic	Intergenic	-16561	NM_001287241	81618	Hs.111577	NM_030926	HPRD:17167	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
19-PTNLD28-TUMOR_peak_78435	chr4	187692036	187692200	+	11.61474	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-47131	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_104789	chr9	98823841	98823970	+	11.61474	NA	Intergenic	Intergenic	-4216	NR_033838	158435	Hs.652615	NR_033838		LOC158435	-	uncharacterized LOC158435	ncRNA
19-PTNLD28-TUMOR_peak_18339	chr11	45668178	45668353	+	11.61474	NA	TTS (NM_003654)	TTS (NM_003654)	18941	NM_003654	8534	Hs.104576	NM_003654		CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_35407	chr15	98835768	98835947	+	11.61474	NA	Intergenic	Intergenic	-203875	NR_120325	101927332		NR_120325		LOC101927332	-	uncharacterized LOC101927332	ncRNA
19-PTNLD28-TUMOR_peak_26243	chr12	110462334	110462575	+	11.61474	NA	intron (NM_033121, intron 7 of 14)	Tigger14a|DNA|TcMar-Tigger	25219	NM_033121	88455	Hs.528703	NM_033121	HPRD:12458	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
19-PTNLD28-TUMOR_peak_33070	chr15	37175992	37176101	+	11.61474	NA	intron (NR_024264, intron 1 of 6)	intron (NR_024264, intron 1 of 6)	2688	NR_024264	145845	Hs.302693	NM_001101327		LOC145845	-	uncharacterized LOC145845	ncRNA
19-PTNLD28-TUMOR_peak_65271	chr22	35772908	35773105	+	11.61430	NA	Intergenic	Intergenic	-4054	NM_002133	3162	Hs.517581	NM_002133	HPRD:00782	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase (decycling) 1	protein-coding
19-PTNLD28-TUMOR_peak_99243	chr8	75511943	75512075	+	11.61430	NA	promoter-TSS (NR_033830)	promoter-TSS (NR_033830)	-92	NR_033830	441355	Hs.647162	NR_033830	ENSG00000254349	FLJ39080	-	uncharacterized LOC441355	ncRNA
19-PTNLD28-TUMOR_peak_37194	chr16	30016751	30017067	+	11.61180	NA	TTS (NM_003586)	TTS (NM_003586)	5492	NM_003586	8448	Hs.355281	NM_003586	HPRD:05195	DOC2A	Doc2	double C2-like domains, alpha	protein-coding
19-PTNLD28-TUMOR_peak_10853	chr1	231908906	231909100	+	11.61180	NA	intron (NM_001164546, intron 6 of 6)	intron (NM_001164546, intron 6 of 6)	45260	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_8764	chr1	183536721	183537093	+	11.61180	NA	intron (NM_000433, intron 7 of 14)	intron (NM_000433, intron 7 of 14)	22832	NM_001190794	4688	Hs.587558	NM_000433	HPRD:01991	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
19-PTNLD28-TUMOR_peak_55113	chr2	114278390	114278634	+	11.61180	NA	Intergenic	Intergenic	21738	NR_121190	101929127	Hs.552787	NR_121188		PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15698	chr10	114711697	114711878	+	11.61180	NA	intron (NM_001198530, intron 3 of 10)	C-rich|Low_complexity|Low_complexity	1778	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_2202	chr1	33515822	33515981	+	11.61180	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-13389	NR_037592	204	Hs.470907	NM_001625	HPRD:00047	AK2	ADK2|AK 2	adenylate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_18403	chr11	46402150	46402473	+	11.60874	NA	promoter-TSS (NM_002391)	promoter-TSS (NM_002391)	-23	NM_001270550	4192	Hs.82045	NM_002391	HPRD:01200	MDK	ARAP|MK|NEGF2	midkine (neurite growth-promoting factor 2)	protein-coding
19-PTNLD28-TUMOR_peak_64052	chr21	46841359	46841617	+	11.60874	NA	non-coding (NR_028082, exon 3 of 3)	non-coding (NR_028082, exon 3 of 3)	3467	NR_028082	378832	Hs.517353	NM_199175	HPRD:10736	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3823	chr1	59281461	59281611	+	11.60373	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	30713	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_93044	chr7	69238702	69239067	+	11.60097	NA	intron (NM_001127231, intron 1 of 17)	L1MDb|LINE|L1	174979	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_58988	chr2	235935635	235935898	+	11.60097	NA	intron (NM_014521, intron 2 of 5)	intron (NM_014521, intron 2 of 5)	75138	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_17381	chr11	14929403	14929571	+	11.60097	NA	Intergenic	Intergenic	-15736	NM_024514	120227	Hs.371427	NM_024514	HPRD:10569	CYP2R1	-	cytochrome P450, family 2, subfamily R, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_51597	chr2	25355075	25355393	+	11.60097	NA	intron (NM_014971, intron 10 of 22)	intron (NM_014971, intron 10 of 22)	36325	NM_000939	5443	Hs.1897	NM_000939	HPRD:01462	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
19-PTNLD28-TUMOR_peak_68588	chr3	58173497	58173691	+	11.60097	NA	Intergenic	Intergenic	23136	NM_004944	1776	Hs.476453	NM_004944	HPRD:03764	DNASE1L3	DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease I-like 3	protein-coding
19-PTNLD28-TUMOR_peak_4216	chr1	68112496	68112958	+	11.60097	NA	Intergenic	Intergenic	-38133	NM_001199741	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_54756	chr2	109211640	109211859	+	11.60097	NA	intron (NM_001193488, intron 1 of 9)	intron (NM_001193488, intron 1 of 9)	6827	NM_001193488	3987	Hs.597715	NM_004987	HPRD:03978	LIMS1	PINCH|PINCH-1|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_8180	chr1	171810321	171810997	+	11.60097	NA	promoter-TSS (NM_001278252)	promoter-TSS (NM_001278252)	41	NM_001136127	26052	Hs.654775	NM_015569	HPRD:13241	DNM3	Dyna III	dynamin 3	protein-coding
19-PTNLD28-TUMOR_peak_862	chr1	12769067	12769202	+	11.60097	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-6984	NM_001103170	126767	Hs.464705	NM_001103169	ENSG00000188984	AADACL3	-	arylacetamide deacetylase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_109414	chrX	128812221	128812510	+	11.60097	NA	Intergenic	CpG	-23432	NM_017413	8862	Hs.303084	NM_017413	HPRD:02246	APLN	APEL|XNPEP2	apelin	protein-coding
19-PTNLD28-TUMOR_peak_97125	chr8	10625745	10626071	+	11.60097	NA	intron (NM_001284356, intron 5 of 5)	intron (NM_001284356, intron 5 of 5)	-37824	NM_031439	83595	Hs.709543	NM_031439	HPRD:18087	SOX7	-	SRY (sex determining region Y)-box 7	protein-coding
19-PTNLD28-TUMOR_peak_20119	chr11	75565099	75565316	+	11.60097	NA	intron (NM_003369, intron 2 of 14)	MLT1J1|LTR|ERVL-MaLR	38995	NM_003369	7405	Hs.202470	NM_003369		UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
19-PTNLD28-TUMOR_peak_24631	chr12	56137350	56137589	+	11.60097	NA	exon (NM_005811, exon 1 of 3)	exon (NM_005811, exon 1 of 3)	405	NM_005811	10220	Hs.600883	NM_005811	HPRD:04895	GDF11	BMP-11|BMP11	growth differentiation factor 11	protein-coding
19-PTNLD28-TUMOR_peak_107608	chrX	13958106	13958472	+	11.60097	NA	Intergenic	Intergenic	-1458	NM_001001994	2824	Hs.495710	NM_005278	HPRD:02082	GPM6B	M6B	glycoprotein M6B	protein-coding
19-PTNLD28-TUMOR_peak_23583	chr12	29844432	29845042	+	11.60097	NA	intron (NM_175861, intron 5 of 17)	intron (NM_175861, intron 5 of 17)	92006	NM_001193451	83857	Hs.401954	NM_175861	HPRD:12472	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51066	chr2	10522756	10523115	+	11.60097	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	14045	NM_001258359	3241	Hs.580427	NM_002149	HPRD:02564	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_52674	chr2	47798237	47798665	+	11.60097	NA	promoter-TSS (NM_022055)	promoter-TSS (NM_022055)	-981	NM_022055	56660	Hs.591586	NM_022055		KCNK12	K2p12.1|THIK-2|THIK2	potassium channel, subfamily K, member 12	protein-coding
19-PTNLD28-TUMOR_peak_19641	chr11	69028192	69028374	+	11.60097	NA	Intergenic	Intergenic	-33322	NM_001300923	26579	Hs.523848	NM_138768	HPRD:16130	MYEOV	OCIM	myeloma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_85091	chr6	6689734	6689830	+	11.60032	NA	Intergenic	Intergenic	-66723	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96933	chr8	6722373	6722530	+	11.60028	NA	Intergenic	Intergenic	13078	NM_005218	1672	Hs.32949	NM_005218	HPRD:03634	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_16814	chr11	4679123	4679246	+	11.59593	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	14028	NM_152430	143503	Hs.470038	NM_152430	HPRD:14996	OR51E1	D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2	olfactory receptor, family 51, subfamily E, member 1	protein-coding
19-PTNLD28-TUMOR_peak_63919	chr21	45505429	45505711	+	11.59593	NA	intron (NM_003274, intron 15 of 22)	AluJr|SINE|Alu	-21638	NM_005049	5822	Hs.449076	NM_005049	HPRD:03279	PWP2	EHOC-17|PWP2H|UTP1	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_51971	chr2	30934617	30934852	+	11.59593	NA	Intergenic	Intergenic	95577	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_51057	chr2	10417917	10418316	+	11.59593	NA	Intergenic	Intergenic	-24914	NM_002149	3241	Hs.580427	NM_002149	HPRD:02564	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_32321	chr14	105512085	105512337	+	11.59593	NA	Intergenic	CpG	19676	NM_001278696	29933	Hs.532504	NM_013345	HPRD:06936	GPR132	G2A	G protein-coupled receptor 132	protein-coding
19-PTNLD28-TUMOR_peak_97223	chr8	12324779	12324893	+	11.59593	NA	intron (NR_040092, intron 4 of 5)	HERVK-int|LTR|ERVK	30314	NR_040092	100506990	Hs.656893	NR_040091		LOC100506990	-	uncharacterized LOC100506990	ncRNA
19-PTNLD28-TUMOR_peak_15284	chr10	103127413	103127622	+	11.59108	NA	intron (NM_003939, intron 1 of 13)	L1ME3A|LINE|L1	13727	NM_033637	8945	Hs.643802	NM_003939	HPRD:04596	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_56233	chr2	149894508	149894713	+	11.59108	NA	promoter-TSS (NM_177964)	promoter-TSS (NM_177964)	-371	NM_177964	130576	Hs.357567	NM_177964	HPRD:14045	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_87068	chr6	36098524	36098872	+	11.59108	NA	intron (NM_002754, intron 1 of 11)	intron (NM_002754, intron 1 of 11)	437	NM_002754	5603	Hs.178695	NM_002754	HPRD:09113	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_39453	chr16	89463909	89464132	+	11.58999	NA	intron (NM_001256182, intron 3 of 13)	intron (NM_001256182, intron 3 of 13)	-33306	NR_110932	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
19-PTNLD28-TUMOR_peak_96095	chr7	143984394	143984554	+	11.58940	NA	Intergenic	Intergenic	-1378	NR_033942	728377	Hs.744262	NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor (GEF) 34, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_48591	chr19	34734556	34734715	+	11.58802	NA	Intergenic	Intergenic	-10821	NM_014686	9710	Hs.330073	NM_014686	HPRD:11077	KIAA0355	-	KIAA0355	protein-coding
19-PTNLD28-TUMOR_peak_95039	chr7	126747753	126748062	+	11.58802	NA	intron (NR_028041, intron 1 of 10)	intron (NR_028041, intron 1 of 10)	-49669	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_104505	chr9	92762096	92762508	+	11.58802	NA	Intergenic	Intergenic	23515	NR_036253	100422963		NR_036253	miRBase:MI0015899	MIR4290	-	microRNA 4290	ncRNA
19-PTNLD28-TUMOR_peak_87061	chr6	36018268	36018641	+	11.58802	NA	intron (NM_139014, intron 1 of 10)	L2c|LINE|L2	23000	NM_139012	1432	Hs.485233	NM_001315	HPRD:02619	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_98228	chr8	37934008	37934134	+	11.58802	NA	Intergenic	Intergenic	-28940	NM_004674	9070	Hs.521530	NM_004674	HPRD:05309	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_51328	chr2	16832201	16832329	+	11.58802	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	14869	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_39163	chr16	85309350	85309518	+	11.58802	NA	Intergenic	Intergenic	-7130	NR_038859	197196	Hs.679002	NM_153238		LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
19-PTNLD28-TUMOR_peak_5891	chr1	118080268	118080420	+	11.58802	NA	Intergenic	L2a|LINE|L2	68048	NR_121626	100996263	Hs.202533	NR_121626	ENSG00000236866	LOC100996263	-	uncharacterized LOC100996263	ncRNA
19-PTNLD28-TUMOR_peak_108352	chrX	51965588	51965757	+	11.58802	NA	Intergenic	L1PA2|LINE|L1	31954	NR_003711	100124541	Hs.709779	NR_003711		SNORA11D	-	small nucleolar RNA, H/ACA box 11D	snoRNA
19-PTNLD28-TUMOR_peak_67214	chr3	24640284	24640529	+	11.58802	NA	Intergenic	Intergenic	-77480	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_87396	chr6	41041537	41041683	+	11.58650	NA	intron (NM_002505, intron 1 of 9)	CpG	903	NM_021705	4800	Hs.10441	NM_002505		NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y, alpha	protein-coding
19-PTNLD28-TUMOR_peak_44172	chr17_gl000205_random	38897	39194	+	11.58534	NA	Intergenic	Intergenic	-77578	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64133	chr21	48055007	48055206	+	11.58534	NA	promoter-TSS (NM_001535)	promoter-TSS (NM_001535)	-401	NM_001535	3275	Hs.154163	NM_001535	HPRD:09060	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_109872	chrX	152735353	152735836	+	11.58534	NA	intron (NR_073156, intron 2 of 12)	intron (NR_073156, intron 2 of 12)	495	NM_017518	55559	Hs.170835	NM_017518	HPRD:18695	HAUS7	UCHL5IP|UIP1	HAUS augmin-like complex, subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_13137	chr10	42683105	42683298	+	11.58325	NA	Intergenic	HERVL-int|LTR|ERVL	180292	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58506	chr2	220318430	220318838	+	11.58325	NA	intron (NM_005876, intron 6 of 40)	intron (NM_005876, intron 6 of 40)	-6900	NM_001173476	10290	Hs.21639	NM_005876	HPRD:10653	SPEG	APEG-1|APEG1|BPEG|SPEGalpha|SPEGbeta	SPEG complex locus	protein-coding
19-PTNLD28-TUMOR_peak_47060	chr19	8455468	8455725	+	11.57918	NA	promoter-TSS (NR_038237)	promoter-TSS (NR_038237)	-21	NR_038237	100507567	Hs.637720	NR_038237	ENSG00000269386	RAB11B-AS1	-	RAB11B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26734	chr12	121716960	121717116	+	11.57583	NA	intron (NM_153500, intron 1 of 14)	intron (NM_153500, intron 1 of 14)	-4650	NM_001270486	10645	Hs.297343	NM_006549	HPRD:06467	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding
19-PTNLD28-TUMOR_peak_90784	chr7	1004507	1004762	+	11.57583	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	-9591	NM_001284308	11033	Hs.602573	NM_006869	HPRD:09733	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
19-PTNLD28-TUMOR_peak_15929	chr10	120921255	120921541	+	11.57583	NA	intron (NM_213649, intron 3 of 13)	intron (NM_213649, intron 3 of 13)	3806	NM_213649	119559	Hs.655168	NM_178867	HPRD:18046	SFXN4	BCRM1|COXPD18	sideroflexin 4	protein-coding
19-PTNLD28-TUMOR_peak_4734	chr1	89228963	89229120	+	11.57583	NA	intron (NM_006256, intron 3 of 21)	AluSp|SINE|Alu	-78154	NR_110682	101927891	Hs.637231	NR_110682	ENSG00000237505	PKN2-AS1	-	PKN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11566	chr1	249157430	249157670	+	11.57583	NA	Intergenic	MER52A|LTR|ERV1	-4235	NM_001193328	55657	Hs.377705	NM_017865	HPRD:07922	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
19-PTNLD28-TUMOR_peak_64432	chr22	20365872	20366000	+	11.57513	NA	Intergenic	Intergenic	-11733	NM_001242313	728229	Hs.376511	NM_001242313		TMEM191B	-	transmembrane protein 191B	protein-coding
19-PTNLD28-TUMOR_peak_81078	chr5	88852147	88852267	+	11.57513	NA	Intergenic	Intergenic	460330	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_67140	chr3	23446825	23446925	+	11.57513	NA	intron (NR_039621, intron 1 of 2)	MIRc|SINE|MIR	71249	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	ncRNA
19-PTNLD28-TUMOR_peak_67936	chr3	46700798	46700974	+	11.57513	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	18013	NM_182775	259173	Hs.517937	NM_147129	HPRD:10643	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_80635	chr5	72837519	72837642	+	11.57513	NA	Intergenic	Intergenic	23931	NM_023039	57763	Hs.239154	NM_023039	HPRD:12044	ANKRA2	ANKRA	ankyrin repeat, family A (RFXANK-like), 2	protein-coding
19-PTNLD28-TUMOR_peak_46759	chr19	3969498	3969878	+	11.56538	NA	exon (NM_001348, exon 2 of 9)	exon (NM_001348, exon 2 of 9)	1433	NM_001348	1613	Hs.631844	NM_001348	HPRD:04478	DAPK3	DLK|ZIP|ZIPK	death-associated protein kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_84648	chr6	307131	307281	+	11.56538	NA	intron (NR_104474, intron 2 of 5)	intron (NR_104474, intron 2 of 5)	15149	NM_001286555	56940	Hs.29106	NM_020185	HPRD:13255	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
19-PTNLD28-TUMOR_peak_6615	chr1	149684145	149684307	+	11.56075	NA	Intergenic	Intergenic	-70024	NM_000566	2209	Hs.77424	NM_000566	HPRD:00904	FCGR1A	CD64|CD64A|FCRI|IGFR1	Fc fragment of IgG, high affinity Ia, receptor (CD64)	protein-coding
19-PTNLD28-TUMOR_peak_42925	chr17	62976623	62976908	+	11.56075	NA	Intergenic	AluJb|SINE|Alu	-5062	NR_026903	201283	Hs.396447	NM_153032	HPRD:08720	AMZ2P1	-	archaelysin family metallopeptidase 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_58024	chr2	206949202	206949386	+	11.56075	NA	intron (NM_017759, intron 1 of 10)	intron (NM_017759, intron 1 of 10)	1612	NM_017759	54891	Hs.445036	NM_017759	HPRD:07894	INO80D	-	INO80 complex subunit D	protein-coding
19-PTNLD28-TUMOR_peak_1800	chr1	27925763	27925892	+	11.56058	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	4178	NM_001029882	27245	Hs.469280	NM_001029882	HPRD:10885	AHDC1	MRD25	AT hook, DNA binding motif, containing 1	protein-coding
19-PTNLD28-TUMOR_peak_44348	chr18	3604665	3604856	+	11.56058	NA	intron (NR_119377, intron 1 of 2)	MER112|DNA|hAT-Charlie	1025	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_104365	chr9	90261589	90261824	+	11.55800	NA	intron (NM_001288729, intron 13 of 25)	intron (NM_001288729, intron 13 of 25)	-79268	NM_001912	1514	Hs.731507	NM_001912	HPRD:00293	CTSL	CATL|CTSL1|MEP	cathepsin L	protein-coding
19-PTNLD28-TUMOR_peak_89855	chr6	147524851	147525101	+	11.55800	NA	promoter-TSS (NM_001127715)	promoter-TSS (NM_001127715)	-518	NM_001127715	134957	Hs.86320	NM_139244		STXBP5	LGL3|LLGL3|Nbla04300	syntaxin binding protein 5 (tomosyn)	protein-coding
19-PTNLD28-TUMOR_peak_68303	chr3	52032059	52032178	+	11.55800	NA	Intergenic	L2|LINE|L2	-2160	NM_000992	6159	Hs.425125	NM_000992	HPRD:03495	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
19-PTNLD28-TUMOR_peak_89124	chr6	111937246	111937466	+	11.55364	NA	Intergenic	Intergenic	-9879	NM_147686	10758	Hs.561514	NM_147200	HPRD:06129	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18077	chr11	35843463	35843637	+	11.55364	NA	Intergenic	Intergenic	-122062	NM_174902	143458	Hs.745134	NM_174902	HPRD:14063	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_69666	chr3	109251255	109251541	+	11.55364	NA	Intergenic	L1M1|LINE|L1	122561	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_5460	chr1	110661582	110661714	+	11.55364	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	6586	NM_203412	164153	Hs.374027	NM_203412	HPRD:17314	UBL4B	-	ubiquitin-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_69854	chr3	112885552	112885889	+	11.55364	NA	intron (NR_110823, intron 1 of 3)	intron (NR_110823, intron 1 of 3)	858	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LOC101929717	-	uncharacterized LOC101929717	ncRNA
19-PTNLD28-TUMOR_peak_49196	chr19	42325260	42325403	+	11.55364	NA	Intergenic	L1M3f|LINE|L1	22463	NM_001291419	147719	Hs.98660	NM_173506	HPRD:14626	LYPD4	SMR	LY6/PLAUR domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_52450	chr2	43893274	43893569	+	11.55364	NA	intron (NM_172069, intron 2 of 29)	L1PA2|LINE|L1	10040	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
19-PTNLD28-TUMOR_peak_66854	chr3	14757941	14758314	+	11.55364	NA	intron (NM_001184958, intron 9 of 16)	intron (NM_001184958, intron 9 of 16)	41521	NM_001184958	84077	Hs.661452	NM_032137	HPRD:12821	C3orf20	-	chromosome 3 open reading frame 20	protein-coding
19-PTNLD28-TUMOR_peak_1888	chr1	29111759	29112117	+	11.55364	NA	Intergenic	AluY|SINE|Alu	-26716	NM_000911	4985	Hs.372	NM_000911	HPRD:01308	OPRD1	OPRD	opioid receptor, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_16589	chr11	1610803	1611072	+	11.55364	NA	intron (NR_021489, intron 1 of 1)	intron (NR_021489, intron 1 of 1)	-4424	NM_001005922	387264	Hs.632147	NM_001005922	HPRD:13948	KRTAP5-1	KRN1L|KRTAP5.1	keratin associated protein 5-1	protein-coding
19-PTNLD28-TUMOR_peak_100913	chr8	130160547	130160862	+	11.55364	NA	Intergenic	LOR1a|LTR|ERV1	92782	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_63343	chr21	36287608	36287809	+	11.55364	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-26721	NM_001001890	861	Hs.149261	NM_001754	HPRD:01043	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_49968	chr19	51034453	51034690	+	11.55364	NA	intron (NM_001080457, intron 2 of 2)	intron (NM_001080457, intron 2 of 2)	-16624	NM_001024656	554235	Hs.436338	NM_001024656	HPRD:18692	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_49568	chr19	47644651	47644849	+	11.55364	NA	intron (NR_027280, intron 1 of 8)	intron (NR_027280, intron 1 of 8)	10635	NR_027280	10055	Hs.515500	NM_005500	HPRD:18010	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_67090	chr3	21371913	21372095	+	11.55364	NA	Intergenic	L1MC3|LINE|L1	-75214	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_80730	chr5	74340241	74340416	+	11.55364	NA	Intergenic	MIRb|SINE|MIR	-13604	NM_016591	51301	Hs.272404	NM_016591	HPRD:16651	GCNT4	C2GNT3	glucosaminyl (N-acetyl) transferase 4, core 2	protein-coding
19-PTNLD28-TUMOR_peak_106525	chr9	135194917	135195058	+	11.55364	NA	intron (NM_015046, intron 10 of 25)	L2a|LINE|L2	35385	NM_015046	23064	Hs.460317	NM_015046	HPRD:07622	SETX	ALS4|AOA2|SCAR1|bA479K20.2	senataxin	protein-coding
19-PTNLD28-TUMOR_peak_55036	chr2	113507360	113507491	+	11.55364	NA	intron (NM_152515, intron 5 of 8)	LTR50|LTR|ERVL	14829	NM_152515	150468	Hs.434250	NM_152515		CKAP2L	-	cytoskeleton associated protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_17803	chr11	30785648	30785768	+	11.55364	NA	Intergenic	Intergenic	-177778	NM_001145399	744	Hs.289795	NM_001584	HPRD:02947	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_51531	chr2	23516009	23516285	+	11.55326	NA	Intergenic	Intergenic	-92151	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_18210	chr11	43812100	43812231	+	11.55326	NA	intron (NM_016142, intron 3 of 10)	MER44B|DNA|TcMar-Tigger	-90192	NM_139178	221120	Hs.720708	NM_139178	HPRD:16793	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1	alkB, alkylation repair homolog 3 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_52128	chr2	36959709	36959826	+	11.55326	NA	intron (NM_001177971, intron 3 of 13)	L2b|LINE|L2	35934	NM_001177969	5212	Hs.137415	NM_053276	HPRD:18284	VIT	-	vitrin	protein-coding
19-PTNLD28-TUMOR_peak_94411	chr7	100933102	100933275	+	11.55326	NA	Intergenic	Intergenic	-18433	NR_110115	101927746	Hs.698373	NR_110115		LOC101927746	-	uncharacterized LOC101927746	ncRNA
19-PTNLD28-TUMOR_peak_85205	chr6	8131620	8131731	+	11.55326	NA	Intergenic	Intergenic	-28847	NM_004280	9521	Hs.602353	NM_004280	HPRD:10931	EEF1E1	AIMP3|P18	eukaryotic translation elongation factor 1 epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_18502	chr11	47989256	47989626	+	11.55326	NA	Intergenic	Intergenic	-12669	NM_001098503	5795	Hs.318547	NM_002843	HPRD:02955	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type, J	protein-coding
19-PTNLD28-TUMOR_peak_87316	chr6	39422392	39422562	+	11.55326	NA	intron (NM_001289021, intron 12 of 21)	L1PA2|LINE|L1	-23327	NM_001289024	221458	Hs.588202	NM_145027	HPRD:10786	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
19-PTNLD28-TUMOR_peak_48630	chr19	35351107	35351383	+	11.55326	NA	Intergenic	L1PA4|LINE|L1	-27472	NR_033982	400685	Hs.730118	NR_033982	ENSG00000267767	LOC400685	-	uncharacterized LOC400685	ncRNA
19-PTNLD28-TUMOR_peak_4962	chr1	94279665	94279804	+	11.55326	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-32654	NR_030621	100126348		NR_030621	miRBase:MI0005567	MIR760	MIRN760|hsa-mir-760	microRNA 760	ncRNA
19-PTNLD28-TUMOR_peak_63331	chr21	36117928	36118112	+	11.55326	NA	promoter-TSS (NR_038885)	promoter-TSS (NR_038885)	-102	NR_038886	100506385	Hs.120179	NR_038885	ENSG00000234380	LINC01426	-	long intergenic non-protein coding RNA 1426	ncRNA
19-PTNLD28-TUMOR_peak_33208	chr15	41079516	41079970	+	11.55326	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	17584	NM_001130448	643338	Hs.631715	NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_51577	chr2	24713604	24713903	+	11.55312	NA	Intergenic	CpG	-93593	NM_003743	8648	Hs.596314	NM_003743	HPRD:04070	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
19-PTNLD28-TUMOR_peak_10747	chr1	229718221	229718331	+	11.55312	NA	Intergenic	Intergenic	-23834	NM_012089	23456	Hs.17614	NM_012089	HPRD:09263	ABCB10	EST20237|M-ABC2|MTABC2	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding
19-PTNLD28-TUMOR_peak_69845	chr3	112754341	112754532	+	11.55312	NA	Intergenic	LTR50|LTR|ERVL	-15881	NR_027796	25871	Hs.591288	NM_015412	HPRD:08524	C3orf17	NET17	chromosome 3 open reading frame 17	protein-coding
19-PTNLD28-TUMOR_peak_4333	chr1	71513327	71513688	+	11.55312	NA	promoter-TSS (NM_198717)	promoter-TSS (NM_198717)	-16	NM_198716	5733	Hs.445000	NM_000957	HPRD:08906	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3e|PGE2-R	prostaglandin E receptor 3 (subtype EP3)	protein-coding
19-PTNLD28-TUMOR_peak_90928	chr7	2569483	2569621	+	11.54695	NA	TTS (NM_001040168)	TTS (NM_001040168)	2844	NR_039791	100616116		NR_039791		MIR4648	-	microRNA 4648	ncRNA
19-PTNLD28-TUMOR_peak_47905	chr19	17518432	17518780	+	11.54330	NA	Intergenic	LTR13|LTR|ERVK	-2149	NM_004335	684	Hs.118110	NM_004335	HPRD:02759	BST2	CD317|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_87656	chr6	44040623	44041091	+	11.54330	NA	Intergenic	Intergenic	54334	NM_032111	64928	Hs.311190	NM_032111	HPRD:14741	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
19-PTNLD28-TUMOR_peak_16503	chr11	706499	706645	+	11.54051	NA	intron (NM_022772, intron 1 of 20)	intron (NM_022772, intron 1 of 20)	452	NM_022772	64787	Hs.55016	NM_022772	HPRD:10940	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
19-PTNLD28-TUMOR_peak_39288	chr16	87669158	87669334	+	11.54015	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	32753	NM_001271605	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_83562	chr5	158889296	158889680	+	11.54015	NA	intron (NR_027110, intron 2 of 6)	intron (NR_027110, intron 2 of 6)	3796	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LOC285627	-	uncharacterized LOC285627	ncRNA
19-PTNLD28-TUMOR_peak_46430	chr18	77627234	77627385	+	11.54015	NA	intron (NM_012283, intron 1 of 1)	intron (NM_012283, intron 1 of 1)	3641	NM_012283	26251	Hs.247905	NM_012283	HPRD:12036	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel, subfamily G, member 2	protein-coding
19-PTNLD28-TUMOR_peak_109882	chrX	152864080	152864424	+	11.54015	NA	intron (NM_001130997, intron 1 of 4)	CpG	380	NM_001130997	92002	Hs.496943	NM_152274	HPRD:06645	FAM58A	STAR	family with sequence similarity 58, member A	protein-coding
19-PTNLD28-TUMOR_peak_89954	chr6	150259219	150259377	+	11.54015	NA	Intergenic	Intergenic	-3838	NM_025217	80328	Hs.656778	NM_025217	HPRD:16143	ULBP2	N2DL2|RAET1H	UL16 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_16773	chr11	3829197	3829389	+	11.54015	NA	promoter-TSS (NR_027016)	promoter-TSS (NR_027016)	53	NM_001256238	27315	Hs.133968	NM_014489	HPRD:17016	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
19-PTNLD28-TUMOR_peak_47188	chr19	10360861	10361003	+	11.53996	NA	Intergenic	Intergenic	-1708	NM_146388	51073	Hs.279652	NM_015956	HPRD:14759	MRPL4	CGI-28|L4mt	mitochondrial ribosomal protein L4	protein-coding
19-PTNLD28-TUMOR_peak_26130	chr12	108752113	108752237	+	11.53615	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-19081	NM_001142343	1240	Hs.197143	NM_004072	HPRD:03829	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemokine-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_24384	chr12	53076153	53076338	+	11.53458	NA	Intergenic	Intergenic	-2054	NM_006121	3848	Hs.80828	NM_006121	HPRD:00763	KRT1	CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
19-PTNLD28-TUMOR_peak_33801	chr15	60095600	60095837	+	11.53458	NA	Intergenic	L1PA4|LINE|L1	-114076	NM_004330	663	Hs.592515	NM_004330	HPRD:04481	BNIP2	BNIP-2|NIP2	BCL2/adenovirus E1B 19kDa interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_99512	chr8	94418069	94418611	+	11.53458	NA	intron (NR_033858, intron 7 of 10)	L1PA2|LINE|L1	-239261	NM_001242668	389676	Hs.386711	NM_001242668	ENSG00000254318	C8orf87	-	chromosome 8 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_66351	chr3	7830649	7830781	+	11.53458	NA	Intergenic	Intergenic	227279	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
19-PTNLD28-TUMOR_peak_70505	chr3	126622501	126622664	+	11.53458	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-84855	NM_032242	5361	Hs.432329	NM_032242	HPRD:11868	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
19-PTNLD28-TUMOR_peak_101454	chr8	142179294	142179441	+	11.53458	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	40647	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_48446	chr19	30433517	30433663	+	11.53458	NA	intron (NR_045557, intron 1 of 9)	CpG	444	NM_003796	8725	Hs.466391	NM_003796	HPRD:11943	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin-like chaperone	protein-coding
19-PTNLD28-TUMOR_peak_77514	chr4	148982357	148982487	+	11.53458	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	278676	NR_039962	100616246		NR_039962		MIR4799	-	microRNA 4799	ncRNA
19-PTNLD28-TUMOR_peak_92675	chr7	55838525	55838692	+	11.53458	NA	Intergenic	Intergenic	-66348	NR_003949	360132	Hs.446691	NM_182827	HPRD:16900	FKBP9P1	FKBP9L	FK506 binding protein 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_22025	chr11	128027700	128027871	+	11.53458	NA	Intergenic	Intergenic	364420	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_78802	chr5	8905226	8905363	+	11.53458	NA	Intergenic	Intergenic	65450	NR_109932	101929284	Hs.403715	NR_109932	ENSG00000250198	LOC101929284	-	uncharacterized LOC101929284	ncRNA
19-PTNLD28-TUMOR_peak_18978	chr11	62225910	62226139	+	11.53458	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	39517	NM_003357	7356	Hs.523732	NM_003357	HPRD:01884	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
19-PTNLD28-TUMOR_peak_76902	chr4	123505726	123505895	+	11.53458	NA	Intergenic	Intergenic	-34328	NR_104126	100996941	Hs.439487	NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_638	chr1	9815598	9815776	+	11.53458	NA	intron (NM_014944, intron 2 of 17)	intron (NM_014944, intron 2 of 17)	68863	NM_001009566	22883	Hs.29665	NM_014944	HPRD:10837	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
19-PTNLD28-TUMOR_peak_39225	chr16	85832754	85832873	+	11.53269	NA	promoter-TSS (NM_001861)	promoter-TSS (NM_001861)	335	NM_006067	10328	Hs.173162	NM_006067	HPRD:05350	EMC8	C16orf2|C16orf4|COX4NB|FAM158B|NOC4	ER membrane protein complex subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_39512	chr16	89939239	89939587	+	11.53269	NA	promoter-TSS (NM_014972)	promoter-TSS (NM_014972)	-581	NM_014972	22980	Hs.415342	NM_014972	HPRD:13830	TCF25	Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding
19-PTNLD28-TUMOR_peak_47362	chr19	11849335	11849472	+	11.52637	NA	intron (NM_001297610, intron 1 of 2)	CpG	421	NM_017507	55552	Hs.142167	NM_017507	ENSG00000197933	ZNF823	HSZFP36	zinc finger protein 823	protein-coding
19-PTNLD28-TUMOR_peak_70983	chr3	134055581	134055718	+	11.52637	NA	Intergenic	Intergenic	31055	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
19-PTNLD28-TUMOR_peak_2746	chr1	40840411	40840598	+	11.52534	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	199	NM_001198978	64744	Hs.15200	NM_022733	HPRD:12442	SMAP2	SMAP1L	small ArfGAP2	protein-coding
19-PTNLD28-TUMOR_peak_75729	chr4	76861360	76861489	+	11.52534	NA	intron (NM_001042402, intron 1 of 8)	CpG-19891	742	NM_014435	27163	Hs.437365	NM_014435	HPRD:12122	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
19-PTNLD28-TUMOR_peak_62131	chr20	53151568	53151832	+	11.52534	NA	intron (NM_018431, intron 1 of 7)	intron (NM_018431, intron 1 of 7)	59443	NM_177959	55816	Hs.473133	NM_018431	HPRD:16317	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
19-PTNLD28-TUMOR_peak_67595	chr3	39148578	39148825	+	11.52434	NA	promoter-TSS (NM_145755)	promoter-TSS (NM_145755)	-451	NM_001105513	199223	Hs.443935	NM_145755	HPRD:10254	TTC21A	STI2	tetratricopeptide repeat domain 21A	protein-coding
19-PTNLD28-TUMOR_peak_47510	chr19	13275383	13275773	+	11.52401	NA	Intergenic	Intergenic	14296	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_95723	chr7	138667060	138667284	+	11.52317	NA	Intergenic	Intergenic	-1108	NM_001164665	57670	Hs.605380	NM_020910	ENSG00000122778	KIAA1549	-	KIAA1549	protein-coding
19-PTNLD28-TUMOR_peak_42236	chr17	48474085	48474297	+	11.52031	NA	intron (NM_018509, intron 1 of 6)	intron (NM_018509, intron 1 of 6)	723	NM_018509	55379	Hs.370927	NM_018509	HPRD:15181	LRRC59	p34	leucine rich repeat containing 59	protein-coding
19-PTNLD28-TUMOR_peak_59330	chr2	242716756	242716875	+	11.51939	NA	intron (NM_022134, intron 1 of 3)	intron (NM_022134, intron 1 of 3)	575	NM_022134	64090	Hs.632556	NM_022134	HPRD:16303	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_82813	chr5	141705488	141705702	+	11.51939	NA	promoter-TSS (NM_030964)	promoter-TSS (NM_030964)	737	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA
19-PTNLD28-TUMOR_peak_39044	chr16	83968638	83968874	+	11.51007	NA	Intergenic	L2a|LINE|L2	-18071	NM_182981	29948	Hs.128055	NM_013370	HPRD:06412	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_92403	chr7	46794121	46794251	+	11.51007	NA	Intergenic	Intergenic	827556	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_33810	chr15	60385918	60386143	+	11.51007	NA	Intergenic	Intergenic	89609	NM_012182	27023	Hs.734475	NM_012182	HPRD:07017	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
19-PTNLD28-TUMOR_peak_60278	chr20	25020416	25020685	+	11.51007	NA	intron (NM_001252677, intron 2 of 11)	intron (NM_001252677, intron 2 of 11)	-7208	NM_001252676	84532	Hs.529353	NM_032501	HPRD:12413	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
19-PTNLD28-TUMOR_peak_39302	chr16	87839816	87840209	+	11.51007	NA	Intergenic	Intergenic	-27258	NR_120309	102724467	Hs.587857	NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
19-PTNLD28-TUMOR_peak_81186	chr5	93903685	93903774	+	11.50700	NA	intron (NM_173665, intron 2 of 4)	intron (NM_173665, intron 2 of 4)	50580	NM_173665	285600	Hs.425123	NM_173665	HPRD:11337	KIAA0825	C5orf36	KIAA0825	protein-coding
19-PTNLD28-TUMOR_peak_65736	chr22	42713074	42713230	+	11.50566	NA	Intergenic	Intergenic	47393	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_72267	chr3	170132035	170132179	+	11.50566	NA	Intergenic	Intergenic	-4546	NM_005602	5010	Hs.31595	NM_005602		CLDN11	OSP|OTM	claudin 11	protein-coding
19-PTNLD28-TUMOR_peak_80896	chr5	78908240	78908834	+	11.50566	NA	5' UTR (NM_001114394, exon 1 of 15)	5' UTR (NM_001114394, exon 1 of 15)	294	NM_173797	167153	Hs.418198	NM_173797	HPRD:15098	PAPD4	GLD2|TUT2	PAP associated domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_11338	chr1	243264742	243264941	+	11.50566	NA	non-coding (NR_029401, exon 1 of 18)	non-coding (NR_029401, exon 1 of 18)	205	NR_029401	731275	Hs.722350	NR_029401		LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
19-PTNLD28-TUMOR_peak_47526	chr19	13388086	13388277	+	11.50566	NA	intron (NM_001174080, intron 22 of 46)	intron (NM_001174080, intron 22 of 46)	126899	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_4834	chr1	91557836	91558326	+	11.50566	NA	Intergenic	MIRc|SINE|MIR	-70269	NM_032186	84146	Hs.173001	NM_016620	HPRD:15885	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
19-PTNLD28-TUMOR_peak_19748	chr11	70461648	70461801	+	11.50465	NA	intron (NR_110766, intron 2 of 8)	MER70A|LTR|ERVL	-15475	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9469	chr1	203648161	203648276	+	11.50465	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	-50491	NR_003019	677843	Hs.676135	NR_003019		SNORA77	ACA63	small nucleolar RNA, H/ACA box 77	snoRNA
19-PTNLD28-TUMOR_peak_86426	chr6	29974627	29975335	+	11.50465	NA	intron (NR_024240, intron 3 of 6).6	CpG-21902	1233	NR_024240	3137	Hs.720762	NR_024240		HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_92245	chr7	44077598	44077738	+	11.50465	NA	promoter-TSS (NR_015401)	promoter-TSS (NR_015401)	-980	NR_072981	255031	Hs.633978	NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
19-PTNLD28-TUMOR_peak_20445	chr11	86299652	86299970	+	11.50428	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	83429	NM_001014811	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_52120	chr2	36825232	36825474	+	11.49729	NA	promoter-TSS (NM_005102)	promoter-TSS (NM_005102)	-21	NM_005102	9637	Hs.258563	NM_005102	HPRD:09213	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
19-PTNLD28-TUMOR_peak_84339	chr5	177098414	177098687	+	11.49729	NA	intron (NR_026921, intron 1 of 5)	intron (NR_026921, intron 1 of 5)	728	NR_026921	202181	Hs.189914	NR_026921		LOC202181	-	SUMO-interacting motifs containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64396	chr22	19974434	19974789	+	11.49387	NA	intron (NM_001670, intron 3 of 19)	CpG	23335	NR_039918	100616414		NR_039918		MIR4761	-	microRNA 4761	ncRNA
19-PTNLD28-TUMOR_peak_19587	chr11	68120677	68120944	+	11.49387	NA	intron (NM_001291902, intron 2 of 22)	intron (NM_001291902, intron 2 of 22)	40733	NM_002335	4041	Hs.6347	NM_002335	HPRD:04616	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_7266	chr1	156066082	156066249	+	11.49383	NA	intron (NM_001282625, intron 3 of 12)	MIR|SINE|MIR	13828	NM_001282625	4000	Hs.594444	NM_005572	HPRD:01035	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1	lamin A/C	protein-coding
19-PTNLD28-TUMOR_peak_32061	chr14	100713236	100713412	+	11.49343	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	8222	NM_003403	7528	Hs.388927	NM_003403		YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_104093	chr9	83995776	83996315	+	11.49343	NA	Intergenic	Intergenic	307551	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34191	chr15	69085772	69086050	+	11.49343	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	8353	NR_036197	100422971		NR_036197		MIR4312	-	microRNA 4312	ncRNA
19-PTNLD28-TUMOR_peak_69377	chr3	98502142	98502284	+	11.49343	NA	intron (NM_001271147, intron 6 of 9)	intron (NM_001271147, intron 6 of 9)	50665	NM_006100	10402	Hs.148716	NM_006100	HPRD:06195	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_84984	chr6	4402777	4402898	+	11.49343	NA	Intergenic	Intergenic	-207962	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_105527	chr9	116254692	116254872	+	11.49343	NA	intron (NM_001282923, intron 5 of 22)	L2c|LINE|L2	-8925	NM_130795	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_16973	chr11	8618808	8619048	+	11.49343	NA	Intergenic	Intergenic	-3092	NM_001289058	65975	Hs.501833	NM_030906	HPRD:09642	STK33	-	serine/threonine kinase 33	protein-coding
19-PTNLD28-TUMOR_peak_23173	chr12	13376185	13376509	+	11.49343	NA	Intergenic	L2c|LINE|L2	26745	NM_001423	2012	Hs.719042	NM_001423	HPRD:11892	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_87924	chr6	51961295	51961443	+	11.49343	NA	Intergenic	L1PA3|LINE|L1	-8946	NM_138694	5314	Hs.662050	NM_138694	HPRD:05987	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
19-PTNLD28-TUMOR_peak_82272	chr5	134217046	134217156	+	11.49343	NA	intron (NM_024715, intron 1 of 4)	SVA_D|Other|Other	7641	NM_024715	79770	Hs.741304	NM_024715	HPRD:08658	TXNDC15	C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_90666	chr6	170556253	170556532	+	11.49343	NA	Intergenic	Intergenic	15265	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
19-PTNLD28-TUMOR_peak_287	chr1	3535653	3535808	+	11.49343	NA	Intergenic	Intergenic	-5826	NM_182752	127262	Hs.20529	NM_182752	HPRD:14037	TPRG1L	FAM79A|h-mover|mover	tumor protein p63 regulated 1-like	protein-coding
19-PTNLD28-TUMOR_peak_12223	chr10	17496427	17496624	+	11.49343	NA	promoter-TSS (NM_001004470)	promoter-TSS (NM_001004470)	-271	NM_001004470	338596	Hs.677766	NM_001004470		ST8SIA6	SIA8F|SIAT8F|ST8SIA-VI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_25583	chr12	93179003	93179177	+	11.49343	NA	intron (NM_003566, intron 22 of 28)	intron (NM_003566, intron 22 of 28)	48825	NM_001004330	440107	Hs.591013	NM_001004330	HPRD:17004	PLEKHG7	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 7	protein-coding
19-PTNLD28-TUMOR_peak_78732	chr5	4512237	4512394	+	11.49343	NA	Intergenic	Intergenic	-261279	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LOC101929153	-	uncharacterized LOC101929153	ncRNA
19-PTNLD28-TUMOR_peak_71778	chr3	152016855	152017056	+	11.49343	NA	promoter-TSS (NM_207297)	promoter-TSS (NM_207297)	-239	NM_207294	4154	Hs.201858	NM_021038	HPRD:07355	MBNL1	EXP|EXP35|EXP40|EXP42|MBNL	muscleblind-like splicing regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_46208	chr18	68024953	68025228	+	11.49343	NA	Intergenic	AluSz|SINE|Alu	26737	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_48487	chr19	32051087	32051316	+	11.49343	NA	Intergenic	Intergenic	-27894	NM_001278577	100507527	Hs.432564	NM_001205273		THEG5	-	testis highly expressed protein 5	protein-coding
19-PTNLD28-TUMOR_peak_59496	chr20	2264470	2264658	+	11.49343	NA	Intergenic	Intergenic	-12049	NM_003245	7053	Hs.2022	NM_003245	HPRD:02584	TGM3	TGE	transglutaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_67699	chr3	42062316	42062764	+	11.49343	NA	Intergenic	Intergenic	-58880	NM_017886	54986	Hs.656192	NM_017886	HPRD:07928	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_68597	chr3	58292836	58293000	+	11.49291	NA	intron (NR_049755, intron 1 of 4)	L2a|LINE|L2	946	NR_049757	11102	Hs.446320	NM_007042	HPRD:18001	RPP14	P14	ribonuclease P/MRP 14kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_59247	chr2	241373505	241373647	+	11.49291	NA	Intergenic	Intergenic	-1539	NM_002081	2817	Hs.328232	NM_002081	HPRD:02671	GPC1	glypican	glypican 1	protein-coding
19-PTNLD28-TUMOR_peak_18724	chr11	58672767	58673152	+	11.49291	NA	Intergenic	CpG	-22143	NM_001220494	92292	Hs.38085	NM_080661	HPRD:14447	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_66752	chr3	13594978	13595308	+	11.49291	NA	intron (NM_001998, intron 1 of 16)	intron (NM_001998, intron 1 of 16)	4518	NM_001004019	2199	Hs.198862	NM_001998	HPRD:00630	FBLN2	-	fibulin 2	protein-coding
19-PTNLD28-TUMOR_peak_90306	chr6	159182357	159182504	+	11.49224	NA	intron (NM_001242395, intron 13 of 15)	AluY|SINE|Alu	3355	NR_037482	100500851		NR_037482	miRBase:MI0016424	MIR3918	-	microRNA 3918	ncRNA
19-PTNLD28-TUMOR_peak_30790	chr14	65184625	65184901	+	11.49091	NA	intron (NM_015549, intron 1 of 14)	L2c|LINE|L2	13570	NM_015549	26030	Hs.509637	NM_015549	HPRD:17861	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
19-PTNLD28-TUMOR_peak_51785	chr2	27977119	27977236	+	11.49091	NA	Intergenic	Intergenic	-17407	NM_004891	9553	Hs.515879	NM_004891	HPRD:14753	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L	mitochondrial ribosomal protein L33	protein-coding
19-PTNLD28-TUMOR_peak_74480	chr4	10035165	10035353	+	11.49091	NA	intron (NM_001001290, intron 1 of 12)	intron (NM_001001290, intron 1 of 12)	6613	NM_001001290	56606	Hs.656895	NM_020041	HPRD:05848	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_2316	chr1	35252150	35252367	+	11.49038	NA	TTS (NM_024009)	TTS (NM_024009)	4347	NM_001005752	2707	Hs.522561	NM_024009	HPRD:04505	GJB3	CX31|DFNA2|DFNA2B|EKV	gap junction protein, beta 3, 31kDa	protein-coding
19-PTNLD28-TUMOR_peak_35809	chr16	2513575	2513817	+	11.49038	NA	promoter-TSS (NR_106826)	promoter-TSS (NR_106826)	-272	NR_106826	102465460		NR_106826		MIR6768	hsa-mir-6768	microRNA 6768	ncRNA
19-PTNLD28-TUMOR_peak_22513	chr12	3069835	3070049	+	11.48817	NA	intron (NM_201443, intron 1 of 10)	intron (NM_201443, intron 1 of 10)	1194	NM_201443	7004	Hs.94865	NM_003213	HPRD:03421	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_93326	chr7	74074223	74074425	+	11.48745	NA	intron (NM_001280800, intron 1 of 9)	intron (NM_001280800, intron 1 of 9)	2333	NM_001163636	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_3051	chr1	44399067	44399610	+	11.48434	NA	5' UTR (NM_001136215, exon 1 of 4)	5' UTR (NM_001136215, exon 1 of 4)	346	NM_057090	9048	Hs.632404	NM_003976	HPRD:04863	ARTN	ENOVIN|EVN|NBN	artemin	protein-coding
19-PTNLD28-TUMOR_peak_72767	chr3	184043681	184043827	+	11.48149	NA	TTS (NR_003055)	TTS (NR_003055)	270	NR_003055	692107		NR_003055		SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
19-PTNLD28-TUMOR_peak_13275	chr10	45345859	45346275	+	11.48149	NA	intron (NR_033842, intron 2 of 7)	intron (NR_033842, intron 2 of 7)	-60697	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_16180	chr10	127511426	127511548	+	11.48149	NA	promoter-TSS (NM_078468)	promoter-TSS (NM_078468)	350	NM_000375	7390	Hs.501376	NM_000375	HPRD:06087	UROS	UROIIIS	uroporphyrinogen III synthase	protein-coding
19-PTNLD28-TUMOR_peak_91265	chr7	8473671	8474011	+	11.48149	NA	5' UTR (NM_152745, exon 1 of 3)	5' UTR (NM_152745, exon 1 of 3)	256	NM_152745	30010	Hs.487564	NM_152745	HPRD:06867	NXPH1	NPH1	neurexophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_77674	chr4	154074530	154074747	+	11.48149	NA	intron (NM_001130067, intron 1 of 11)	CpG	368	NM_001130067	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83681	chr5	162926054	162926191	+	11.48149	NA	Intergenic	Intergenic	-3948	NM_182796	27430	Hs.54642	NM_013283	HPRD:05701	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase II, beta	protein-coding
19-PTNLD28-TUMOR_peak_60011	chr20	17876257	17876536	+	11.48149	NA	Intergenic	Intergenic	67193	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
19-PTNLD28-TUMOR_peak_31767	chr14	93403951	93404144	+	11.48149	NA	3' UTR (NM_001142594, exon 11 of 11)	3' UTR (NM_001142594, exon 11 of 11)	14602	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_32289	chr14	105175038	105175207	+	11.48149	NA	intron (NM_022489, intron 10 of 22)	intron (NM_022489, intron 10 of 22)	-15412	NM_152328	122622	Hs.592327	NM_152328	HPRD:12433	ADSSL1	-	adenylosuccinate synthase like 1	protein-coding
19-PTNLD28-TUMOR_peak_58367	chr2	218692303	218692464	+	11.48149	NA	intron (NM_022648, intron 22 of 32)	MIR3|SINE|MIR	-71067	NR_026597	729582	Hs.572788	NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
19-PTNLD28-TUMOR_peak_47881	chr19	17371798	17371909	+	11.48149	NA	intron (NM_031941, intron 4 of 12)	L2|LINE|L2	3691	NM_031941	83878	Hs.512773	NM_031941	HPRD:18276	USHBP1	AIEBP|MCC2	Usher syndrome 1C binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_107829	chrX	24442176	24442410	+	11.48149	NA	Intergenic	Intergenic	-41051	NM_001142386	5165	Hs.296031	NM_005391	HPRD:03956	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase, isozyme 3	protein-coding
19-PTNLD28-TUMOR_peak_14041	chr10	71200057	71200231	+	11.47722	NA	Intergenic	MIR3|SINE|MIR	-11082	NM_012339	23555	Hs.499941	NM_012339	HPRD:15511	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
19-PTNLD28-TUMOR_peak_6791	chr1	151515238	151515415	+	11.47672	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	2541	NM_001301317	7286	Hs.489922	NM_020127	HPRD:02516	TUFT1	-	tuftelin 1	protein-coding
19-PTNLD28-TUMOR_peak_80523	chr5	70518789	70518984	+	11.47645	NA	intron (NR_033968, intron 2 of 3)	intron (NR_033968, intron 2 of 3)	36236	NR_033968	100049076	Hs.529793	NR_033968		GUSBP9	-	glucuronidase, beta pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_38480	chr16	69360326	69360558	+	11.47159	NA	Intergenic	Intergenic	4056	NM_022341	64146	Hs.130849	NM_022341	HPRD:17829	PDF	-	peptide deformylase (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_40275	chr17	15164007	15164348	+	11.46928	NA	promoter-TSS (NM_153322)	promoter-TSS (NM_153322)	-16	NM_153322	5376	Hs.372031	NM_000304	HPRD:03059	PMP22	CMT1A|CMT1E|DSS|GAS-3|HMSNIA|HNPP|Sp110	peripheral myelin protein 22	protein-coding
19-PTNLD28-TUMOR_peak_82711	chr5	140792492	140792633	+	11.46928	NA	promoter-TSS (NM_018913)	promoter-TSS (NM_018913)	-181	NM_032090	56106	Hs.368160	NM_018913	HPRD:09387	PCDHGA10	PCDH-GAMMA-A10	protocadherin gamma subfamily A, 10	protein-coding
19-PTNLD28-TUMOR_peak_28324	chr13	53029770	53030122	+	11.46928	NA	promoter-TSS (NM_001286686)	promoter-TSS (NM_001286686)	-161	NM_001286686	26586	Hs.444028	NM_018204	HPRD:10832	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_15973	chr10	122152267	122152640	+	11.46775	NA	Intergenic	L4|LINE|RTE	-64013	NM_001030059	196051	Hs.40479	NM_001030059	HPRD:18745	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_25657	chr12	95594941	95595048	+	11.46775	NA	intron (NM_018351, intron 2 of 20)	intron (NM_018351, intron 2 of 20)	16246	NM_018351	55785	Hs.506381	NM_018351	HPRD:16892	FGD6	ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_39942	chr17	6949548	6949853	+	11.46775	NA	Intergenic	Intergenic	-2458	NM_153357	162515	Hs.336564	NM_153357	HPRD:11567	SLC16A11	MCT11	solute carrier family 16, member 11	protein-coding
19-PTNLD28-TUMOR_peak_91082	chr7	5510444	5510663	+	11.46775	NA	Intergenic	Intergenic	24995	NR_030318	693174		NR_030318		MIR589	MIRN589|hsa-mir-589	microRNA 589	ncRNA
19-PTNLD28-TUMOR_peak_78675	chr5	1476293	1476746	+	11.46775	NA	intron (NM_024830, intron 9 of 13)	intron (NM_024830, intron 9 of 13)	-30976	NM_001044	6531	Hs.406	NM_001044	HPRD:00543	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 (neurotransmitter transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_107308	chrUn_gl000240	677	822	+	11.46775	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_86019	chr6	24996562	24996770	+	11.46775	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	45730	NM_001286446	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_84879	chr6	3327151	3327331	+	11.46758	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	68079	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome (prosome, macropain) assembly chaperone 4	protein-coding
19-PTNLD28-TUMOR_peak_102939	chr9	36398872	36399071	+	11.46758	NA	intron (NM_194330, intron 1 of 11)	intron (NM_194330, intron 1 of 11)	1325	NM_022781	152006	Hs.333503	NM_022781	HPRD:11519	RNF38	-	ring finger protein 38	protein-coding
19-PTNLD28-TUMOR_peak_93223	chr7	73295819	73295979	+	11.46758	NA	Intergenic	Intergenic	20410	NM_182504	135886	Hs.647026	NM_182504	HPRD:15662	WBSCR28	-	Williams-Beuren syndrome chromosome region 28	protein-coding
19-PTNLD28-TUMOR_peak_25965	chr12	105503408	105503541	+	11.46758	NA	intron (NM_001293640, intron 1 of 32)	AluJb|SINE|Alu	1982	NM_001293640	23325	Hs.12144	NM_015275	HPRD:13829	KIAA1033	MRT43|SWIP	KIAA1033	protein-coding
19-PTNLD28-TUMOR_peak_79340	chr5	32279282	32279580	+	11.46538	NA	intron (NM_001294343, intron 1 of 14)	AluJo|SINE|Alu	33683	NM_001040446	54545	Hs.481836	NM_019061	HPRD:05933	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_52998	chr2	62519359	62519670	+	11.46538	NA	Intergenic	Intergenic	86553	NR_049824	100847087		NR_049824	miRBase:MI0018171	MIR5192	-	microRNA 5192	ncRNA
19-PTNLD28-TUMOR_peak_34928	chr15	84052808	84052947	+	11.46538	NA	Intergenic	L1PA2|LINE|L1	-63103	NM_001301109	6457	Hs.270055	NM_003027	HPRD:04528	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_73399	chr3	194392827	194393041	+	11.46387	NA	5' UTR (NM_018385, exon 1 of 14)	5' UTR (NM_018385, exon 1 of 14)	272	NM_018385	55341	Hs.744061	NM_018385	HPRD:07748	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_26911	chr12	123874236	123874566	+	11.46019	NA	intron (NM_020382, intron 2 of 7)	CpG-5949	5697	NM_020382	387893	Hs.443735	NM_020382	HPRD:06254	SETD8	KMT5A|PR-Set7|SET07|SET8	SET domain containing (lysine methyltransferase) 8	protein-coding
19-PTNLD28-TUMOR_peak_83023	chr5	146938573	146938679	+	11.46019	NA	promoter-TSS (NR_038902)	promoter-TSS (NR_038902)	-931	NR_038902	153469	Hs.184323	NR_038902		JAKMIP2-AS1	-	JAKMIP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38745	chr16	75268222	75268363	+	11.46019	NA	intron (NM_001170714, intron 6 of 7)	intron (NM_001170714, intron 6 of 7)	4688	NM_001170721	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_8160	chr1	171407698	171407880	+	11.45896	NA	Intergenic	MER5A|DNA|hAT-Charlie	-46877	NM_015172	23215	Hs.494614	NM_015172	HPRD:16539	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
19-PTNLD28-TUMOR_peak_46589	chr19	1445289	1445391	+	11.45896	NA	Intergenic	CpG	-4808	NM_005883	10297	Hs.446376	NM_005883	HPRD:09802	APC2	APCL	adenomatosis polyposis coli 2	protein-coding
19-PTNLD28-TUMOR_peak_65409	chr22	37853469	37853651	+	11.45896	NA	Intergenic	Intergenic	28865	NM_001166343	4242	Hs.517603	NM_002405	HPRD:03988	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_87064	chr6	36086386	36086603	+	11.45896	NA	Intergenic	Intergenic	-11767	NR_072996	5603	Hs.178695	NM_002754	HPRD:09113	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_86304	chr6	28237414	28237543	+	11.45896	NA	intron (NM_001287421, intron 1 of 3)	MLT2B4|LTR|ERVL	2341	NM_001287421	7741	Hs.157883	NM_007151		ZSCAN26	SRE-ZBP|ZNF187	zinc finger and SCAN domain containing 26	protein-coding
19-PTNLD28-TUMOR_peak_92014	chr7	36073720	36073923	+	11.45896	NA	Intergenic	LTR40b|LTR|ERVL	-61099	NR_108089	101928618	Hs.561704	NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
19-PTNLD28-TUMOR_peak_81546	chr5	111651835	111651993	+	11.45896	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	87934	NR_110559	101927023	Hs.571002	NR_110559		LOC101927023	-	uncharacterized LOC101927023	ncRNA
19-PTNLD28-TUMOR_peak_9366	chr1	202777177	202777337	+	11.44958	NA	exon (NM_006618, exon 1 of 27)	exon (NM_006618, exon 1 of 27)	292	NM_006618	10765	Hs.443650	NM_006618	HPRD:09251	KDM5B	CT31|JARID1B|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A	lysine (K)-specific demethylase 5B	protein-coding
19-PTNLD28-TUMOR_peak_8623	chr1	181220962	181221112	+	11.44958	NA	Intergenic	HERVK11-int|LTR|ERVK	15513	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_6225	chr1	144816893	144817018	+	11.44803	NA	intron (NM_001037675, intron 11 of 20)	intron (NM_001037675, intron 11 of 20)	115410	NM_001002811	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_32769	chr15	29968874	29968996	+	11.44803	NA	Intergenic	FLAM_C|SINE|Alu	-106008	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_53528	chr2	74227400	74227575	+	11.44803	NA	intron (NM_001287491, intron 1 of 10)	L2c|LINE|L2	13956	NM_001287491	200424	Hs.516107	NM_144993	ENSG00000187605	TET3	-	tet methylcytosine dioxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_226	chr1	2321827	2322030	+	11.44385	NA	intron (NM_001301060, intron 1 of 10)	intron (NM_001301060, intron 1 of 10)	1262	NR_125361	79906	Hs.642701	NM_024848	HPRD:07843	MORN1	-	MORN repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_19662	chr11	69259670	69259819	+	11.44276	NA	Intergenic	Intergenic	-40585	NR_120543	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_43430	chr17	73495423	73495654	+	11.44113	NA	TTS (NM_001142643)	TTS (NM_001142643)	909	NR_106843	102466911		NR_106843		MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
19-PTNLD28-TUMOR_peak_20212	chr11	77530476	77530655	+	11.44053	NA	intron (NM_016578, intron 1 of 15)	intron (NM_016578, intron 1 of 15)	1315	NM_016578	51773	Hs.420229	NM_016578	HPRD:10537	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
19-PTNLD28-TUMOR_peak_32385	chr14	106154431	106154620	+	11.43400	NA	Intergenic	Intergenic	-15381	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96037	chr7	143059368	143059588	+	11.43400	NA	promoter-TSS (NM_014690)	promoter-TSS (NM_014690)	-305	NM_014690	9715	Hs.648908	NM_014690	HPRD:13816	FAM131B	-	family with sequence similarity 131, member B	protein-coding
19-PTNLD28-TUMOR_peak_103427	chr9	66486735	66487050	+	11.43361	NA	Intergenic	CpG	-7377	NR_024496	442421	Hs.585349	NR_024496		PTGER4P2-CDK2AP2P2	PTGER4P2	PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene	pseudo
19-PTNLD28-TUMOR_peak_3068	chr1	44513909	44514080	+	11.43361	NA	Intergenic	Intergenic	-16830	NM_001024845	6536	Hs.442590	NM_006934	HPRD:03010	SLC6A9	GLYT1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding
19-PTNLD28-TUMOR_peak_49362	chr19	45595976	45596213	+	11.43361	NA	promoter-TSS (NM_019121)	promoter-TSS (NM_019121)	-337	NM_019121	284352	Hs.285363	NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1, regulatory subunit 37	protein-coding
19-PTNLD28-TUMOR_peak_89168	chr6	113443290	113443439	+	11.43351	NA	Intergenic	Intergenic	-735163	NM_002356	4082	Hs.519909	NM_002356	HPRD:07519	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
19-PTNLD28-TUMOR_peak_11657	chr10	1541438	1541812	+	11.43351	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-27200	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105349	chr9	112649527	112649688	+	11.43351	NA	intron (NM_001037293, intron 4 of 6)	intron (NM_001037293, intron 4 of 6)	107030	NM_007203	445815	Hs.591908	NM_007203	HPRD:09197	PALM2-AKAP2	AKAP2	PALM2-AKAP2 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_8450	chr1	178293280	178293400	+	11.43351	NA	intron (NM_170692, intron 3 of 17)	intron (NM_170692, intron 3 of 17)	-17266	NM_004841	9462	Hs.496139	NM_004841	HPRD:05845	RASAL2	NGAP	RAS protein activator like 2	protein-coding
19-PTNLD28-TUMOR_peak_85444	chr6	12894161	12894328	+	11.43351	NA	intron (NM_030948, intron 4 of 14)	intron (NM_030948, intron 4 of 14)	177207	NM_030948	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_105637	chr9	117797251	117797543	+	11.43351	NA	intron (NM_002160, intron 22 of 27)	intron (NM_002160, intron 22 of 27)	83139	NM_002160	3371	Hs.143250	NM_002160	HPRD:01756	TNC	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C	tenascin C	protein-coding
19-PTNLD28-TUMOR_peak_71122	chr3	137335722	137336051	+	11.43351	NA	Intergenic	HAL1|LINE|L1	-147248	NM_004189	8403	Hs.248184	NM_004189		SOX14	SOX28	SRY (sex determining region Y)-box 14	protein-coding
19-PTNLD28-TUMOR_peak_24878	chr12	60464032	60464171	+	11.43351	NA	Intergenic	THE1D|LTR|ERVL-MaLR	380983	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_17555	chr11	19240747	19240870	+	11.43351	NA	Intergenic	Intergenic	-8690	NM_003476	8048	Hs.83577	NM_003476	HPRD:07525	CSRP3	CLP|CMD1M|CMH12|CRP3|LMO4|MLP	cysteine and glycine-rich protein 3 (cardiac LIM protein)	protein-coding
19-PTNLD28-TUMOR_peak_78046	chr4	171180847	171181033	+	11.43351	NA	Intergenic	LTR33C|LTR|ERVL	-169402	NM_001286683	51166	Hs.529735	NM_016228	HPRD:12392	AADAT	KAT2|KATII	aminoadipate aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_35961	chr16	4203807	4203907	+	11.43351	NA	Intergenic	AluY|SINE|Alu	-37671	NM_001116	115	Hs.391860	NM_001116	HPRD:04489	ADCY9	AC9	adenylate cyclase 9	protein-coding
19-PTNLD28-TUMOR_peak_83208	chr5	149903429	149903555	+	11.43351	NA	intron (NM_001301063, intron 2 of 13)	intron (NM_001301063, intron 2 of 13)	15818	NM_001543	3340	Hs.222055	NM_001543	HPRD:02912	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
19-PTNLD28-TUMOR_peak_10159	chr1	221060867	221061178	+	11.43351	NA	Intergenic	CpG	-7540	NR_046901	100873924	Hs.645593	NR_046901		HLX-AS1	-	HLX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102554	chr9	27371416	27371529	+	11.43351	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-74335	NM_001161585	54586	Hs.163070	NM_020641	HPRD:12932	EQTN	AFAF|C9orf11|SPACA8|equatorin	equatorin, sperm acrosome associated	protein-coding
19-PTNLD28-TUMOR_peak_27441	chr13	23363566	23363745	+	11.43351	NA	Intergenic	Intergenic	108665	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	brain abundant, membrane attached signal protein 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_107730	chrX	19780684	19780899	+	11.43351	NA	intron (NM_031892, intron 2 of 17)	LTR8|LTR|ERV1	37126	NM_001024666	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_65702	chr22	42063511	42063677	+	11.43351	NA	Intergenic	Intergenic	21319	NM_005008	4809	Hs.182255	NM_005008	HPRD:03197	NHP2L1	15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_1433	chr1	23302980	23303161	+	11.43351	NA	Intergenic	Intergenic	-11147	NM_001289974	646262		NM_001289974	ENSG00000215906	LACTBL1	-	lactamase, beta-like 1	protein-coding
19-PTNLD28-TUMOR_peak_78204	chr4	183808118	183808300	+	11.43351	NA	Intergenic	L1MB3|LINE|L1	30421	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_48494	chr19	32552262	32552643	+	11.43351	NA	Intergenic	Intergenic	35684	NR_110675	100996665	Hs.443685	NR_110673	ENSG00000267779	CTC-360P9.3	-	uncharacterized LOC100996665	ncRNA
19-PTNLD28-TUMOR_peak_70206	chr3	123021158	123021341	+	11.43351	NA	intron (NM_001199642, intron 14 of 20)	L1MB7|LINE|L1	100475	NM_012430	26984	Hs.477361	NM_012430		SEC22A	SEC22L2	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_39732	chr17	2916352	2916529	+	11.43351	NA	intron (NM_015085, intron 17 of 24)	intron (NM_015085, intron 17 of 24)	-47251	NR_110818	101927911	Hs.626373	NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
19-PTNLD28-TUMOR_peak_90545	chr6	168069274	168069456	+	11.43351	NA	non-coding (NR_117091, exon 3 of 3)	non-coding (NR_117091, exon 3 of 3)	10538	NR_117091	401286	Hs.487182	NR_117091		LOC401286	-	uncharacterized LOC401286	ncRNA
19-PTNLD28-TUMOR_peak_10716	chr1	229335111	229335488	+	11.42886	NA	Intergenic	Intergenic	-71510	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_36303	chr16	11552354	11552536	+	11.42886	NA	Intergenic	L1MB3|LINE|L1	-6671	NR_110907	101927131	Hs.569654	NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
19-PTNLD28-TUMOR_peak_89358	chr6	125622736	125623143	+	11.42886	NA	intron (NM_016063, intron 1 of 5)	CpG	343	NM_016063	51020	Hs.32826	NM_016063	HPRD:12897	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_79092	chr5	16335756	16336131	+	11.42886	NA	Intergenic	L1PA2|LINE|L1	105268	NR_104625	101929505	Hs.639360	NR_104625	ENSG00000248150	LOC101929505	-	uncharacterized LOC101929505	ncRNA
19-PTNLD28-TUMOR_peak_62323	chr20	56475418	56475548	+	11.42886	NA	Intergenic	LTR33A_|LTR|ERVL	5033	NR_039757	100616353		NR_039757	miRBase:MI0016899	MIR4532	-	microRNA 4532	ncRNA
19-PTNLD28-TUMOR_peak_58557	chr2	222287761	222287873	+	11.42886	NA	intron (NM_004438, intron 17 of 17)	intron (NM_004438, intron 17 of 17)	149193	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_90883	chr7	2139461	2139618	+	11.42886	NA	intron (NM_001013836, intron 11 of 18)	intron (NM_001013836, intron 11 of 18)	133044	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_29770	chr14	32724202	32724333	+	11.42886	NA	Intergenic	Intergenic	-51792	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_26407	chr12	113612255	113612429	+	11.42886	NA	intron (NM_024072, intron 10 of 19)	intron (NM_024072, intron 10 of 19)	10942	NM_001111322	79039	Hs.506861	NM_024072	HPRD:13129	DDX54	DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding
19-PTNLD28-TUMOR_peak_34960	chr15	84910831	84911014	+	11.42788	NA	exon (NM_001267536, exon 8 of 9)	exon (NM_001267536, exon 8 of 9)	6397	NM_001267536	643707	Hs.498345	NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family-like 4	protein-coding
19-PTNLD28-TUMOR_peak_90874	chr7	2024640	2024926	+	11.42788	NA	intron (NM_001013836, intron 14 of 18)	MLT2B4|LTR|ERVL	-140894	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	ncRNA
19-PTNLD28-TUMOR_peak_33354	chr15	44090554	44090794	+	11.42788	NA	exon (NM_001258031, exon 4 of 12)	exon (NM_001258031, exon 4 of 12)	1621	NM_001258032	619189	Hs.604985	NM_001258031	ENSG00000184716	SERINC4	-	serine incorporator 4	protein-coding
19-PTNLD28-TUMOR_peak_29467	chr14	23320284	23320455	+	11.42788	NA	Intergenic	Intergenic	14627	NM_004995	4323	Hs.2399	NM_004995	HPRD:02856	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_75332	chr4	54459018	54459466	+	11.42788	NA	intron (NR_046827, intron 1 of 1)	intron (NR_046827, intron 1 of 1)	119	NR_046827	100873955	Hs.351074	NR_046827		LNX1-AS2	-	LNX1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_109729	chrX	149108486	149108665	+	11.42762	NA	intron (NR_027456, intron 1 of 11)	intron (NR_027456, intron 1 of 11)	1809	NR_027456	100272228	Hs.496916	NR_027456	ENSG00000235703	LINC00894	-	long intergenic non-protein coding RNA 894	ncRNA
19-PTNLD28-TUMOR_peak_102149	chr9	8017258	8017458	+	11.42575	NA	Intergenic	Intergenic	-217559	NM_033428	90871	Hs.7517	NM_033428	HPRD:12939	TMEM261	C9orf123	transmembrane protein 261	protein-coding
19-PTNLD28-TUMOR_peak_80313	chr5	65813990	65814111	+	11.42575	NA	Intergenic	Intergenic	-6618	NR_105001	101928769	Hs.97903	NR_105001	ENSG00000250313	LOC101928769	-	uncharacterized LOC101928769	ncRNA
19-PTNLD28-TUMOR_peak_95112	chr7	128060968	128061206	+	11.42575	NA	Intergenic	Intergenic	-11051	NM_001142576	3614	Hs.654401	NM_000883	HPRD:08853	IMPDH1	IMPD|IMPD1|LCA11|RP10|sWSS2608	IMP (inosine 5'-monophosphate) dehydrogenase 1	protein-coding
19-PTNLD28-TUMOR_peak_76310	chr4	95762628	95762855	+	11.42575	NA	intron (NM_001203, intron 1 of 12)	L1PA3|LINE|L1	83613	NM_001203	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_3010	chr1	43972066	43972408	+	11.42575	NA	Intergenic	Intergenic	-24310	NM_002840	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_25280	chr12	71693442	71693583	+	11.42575	NA	Intergenic	Intergenic	-140038	NM_003667	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_33765	chr15	59158433	59158619	+	11.42575	NA	Intergenic	MER58A|DNA|hAT-Charlie	67326	NM_024755	79811	Hs.512932	NM_017968	HPRD:07819	SLTM	Met	SAFB-like, transcription modulator	protein-coding
19-PTNLD28-TUMOR_peak_56099	chr2	142887782	142888552	+	11.42575	NA	intron (NM_018557, intron 1 of 90)	CpG	1103	NM_018557	53353	Hs.656461	NM_018557	HPRD:16383	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_61306	chr20	43897308	43897528	+	11.42575	NA	Intergenic	Intergenic	-14213	NM_003064	6590	Hs.517070	NM_003064	HPRD:00121	SLPI	ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4	secretory leukocyte peptidase inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_80458	chr5	68938694	68938889	+	11.42401	NA	intron (NR_027386, intron 4 of 5).2	intron (NR_027386, intron 4 of 5).2	-9763	NR_027439	100272216	Hs.662074	NR_027439		LOC100272216	-	uncharacterized LOC100272216	ncRNA
19-PTNLD28-TUMOR_peak_51463	chr2	20650586	20650798	+	11.42303	NA	Intergenic	Intergenic	3857	NM_004040	388	Hs.502876	NM_004040	HPRD:01321	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
19-PTNLD28-TUMOR_peak_23308	chr12	19282927	19283179	+	11.42071	NA	exon (NM_001190860, exon 2 of 4)	exon (NM_001190860, exon 2 of 4)	427	NM_001190860	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_5280	chr1	108072323	108072430	+	11.42024	NA	Intergenic	Intergenic	158750	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_112	chr1	1137063	1137740	+	11.41611	NA	Intergenic	(CAGCC)n|Simple_repeat|Simple_repeat	4688	NM_004195	8784	Hs.212680	NM_004195	HPRD:04879	TNFRSF18	AITR|CD357|GITR|GITR-D	tumor necrosis factor receptor superfamily, member 18	protein-coding
19-PTNLD28-TUMOR_peak_105692	chr9	118995055	118995311	+	11.41519	NA	intron (NM_002581, intron 6 of 21)	intron (NM_002581, intron 6 of 21)	79112	NM_002581	5069	Hs.643599	NM_002581	HPRD:01448	PAPPA	ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1	pregnancy-associated plasma protein A, pappalysin 1	protein-coding
19-PTNLD28-TUMOR_peak_59114	chr2	238601930	238602096	+	11.41519	NA	intron (NM_001137552, intron 1 of 10)	intron (NM_001137552, intron 1 of 10)	1206	NM_001137553	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_32477	chr15	20961936	20962052	+	11.41440	NA	promoter-TSS (NR_027992)	promoter-TSS (NR_027992)	-514	NR_027992	606	Hs.657985	NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_46777	chr19	4182526	4182646	+	11.41213	NA	promoter-TSS (NM_016539)	promoter-TSS (NM_016539)	10	NM_001193285	51548	Hs.423756	NM_016539	HPRD:12093	SIRT6	SIR2L6	sirtuin 6	protein-coding
19-PTNLD28-TUMOR_peak_63173	chr21	33630733	33630896	+	11.41213	NA	Intergenic	Intergenic	20562	NM_018944	54069	Hs.190518	NM_018944	HPRD:10749	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
19-PTNLD28-TUMOR_peak_101865	chr9	95134	95238	+	11.41213	NA	Intergenic	Intergenic	22496	NR_121188	101929127	Hs.552787	NR_121188		PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78173	chr4	183110755	183110977	+	11.41213	NA	Intergenic	Intergenic	20420	NR_031640	100302270		NR_031640	miRBase:MI0006372	MIR1305	MIRN1305|hsa-mir-1305	microRNA 1305	ncRNA
19-PTNLD28-TUMOR_peak_75464	chr4	58017763	58017895	+	11.41213	NA	intron (NR_034081, intron 1 of 4)	intron (NR_034081, intron 1 of 4)	-41278	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_50038	chr19	51521927	51522417	+	11.41191	NA	intron (NM_145888, intron 2 of 5)	CpG	782	NM_145888	5655	Hs.275464	NM_002776	HPRD:04054	KLK10	NES1|PRSSL1	kallikrein-related peptidase 10	protein-coding
19-PTNLD28-TUMOR_peak_100791	chr8	128306352	128306503	+	11.41009	NA	intron (NR_117100, intron 5 of 5)	intron (NR_117100, intron 5 of 5)	49545	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_17396	chr11	15644158	15644268	+	11.40978	NA	Intergenic	Intergenic	-21218	NM_001293172	102724957	Hs.512245	NM_001293172		LOC102724957	-	uncharacterized LOC102724957	protein-coding
19-PTNLD28-TUMOR_peak_83441	chr5	155628860	155629017	+	11.40978	NA	Intergenic	Intergenic	-124829	NM_172244	6444	Hs.387207	NM_000337	HPRD:03246	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_27423	chr13	22322480	22322711	+	11.40978	NA	Intergenic	Intergenic	77380	NM_002010	2254	Hs.111	NM_002010	HPRD:02951	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
19-PTNLD28-TUMOR_peak_60930	chr20	36722852	36722974	+	11.40978	NA	Intergenic	MIR3|SINE|MIR	60965	NM_021215	58490	Hs.278839	NM_021215	HPRD:08513	RPRD1B	C20orf77|CREPT|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_8964	chr1	191497457	191497670	+	11.40978	NA	Intergenic	LTR42|LTR|ERVL	-630029	NM_130782	64407	Hs.440890	NM_130782	HPRD:06224	RGS18	RGS13	regulator of G-protein signaling 18	protein-coding
19-PTNLD28-TUMOR_peak_14425	chr10	77605226	77605328	+	11.40978	NA	intron (NM_032024, intron 1 of 5)	intron (NM_032024, intron 1 of 5)	62758	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_14861	chr10	92010746	92010975	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	289702	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
19-PTNLD28-TUMOR_peak_9150	chr1	200741210	200741333	+	11.40978	NA	intron (NM_001297708, intron 2 of 16)	MER112|DNA|hAT-Charlie	32585	NM_001297707	23271	Hs.23585	NM_203459	HPRD:11124	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin-associated protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_80872	chr5	78365262	78365491	+	11.40978	NA	promoter-TSS (NM_017614)	promoter-TSS (NM_017614)	121	NR_104002	29958	Hs.655653	NM_013391	HPRD:05789	DMGDH	DMGDHD|ME2GLYDH	dimethylglycine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_7825	chr1	164409511	164409703	+	11.40978	NA	Intergenic	Intergenic	-118990	NM_001204963	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_33518	chr15	49267988	49268222	+	11.40978	NA	Intergenic	CpG	-12464	NM_203349	399694	Hs.642615	NM_203349	HPRD:15289	SHC4	RaLP|SHCD	SHC (Src homology 2 domain containing) family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_88103	chr6	56144578	56144744	+	11.40978	NA	intron (NR_046940, intron 4 of 5)	L3b|LINE|CR1	-32283	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_102026	chr9	4327895	4328069	+	11.40978	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-27947	NM_001042413	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_33100	chr15	38994908	38995059	+	11.40978	NA	Intergenic	LTR22A|LTR|ERVK	6184	NM_207444	400359	Hs.448785	NM_207444	HPRD:13418	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_48971	chr19	39584592	39584718	+	11.40978	NA	intron (NM_001004318, intron 2 of 12)	L1MC4a|LINE|L1	9710	NM_001004318	390928	Hs.448934	NM_001004318	HPRD:13361	PAPL	-	iron/zinc purple acid phosphatase-like protein	protein-coding
19-PTNLD28-TUMOR_peak_58815	chr2	232347540	232347744	+	11.40978	NA	Intergenic	Intergenic	-18437	NM_005381	4691	Hs.79110	NM_005381		NCL	C23	nucleolin	protein-coding
19-PTNLD28-TUMOR_peak_7799	chr1	163260093	163260262	+	11.40978	NA	intron (NM_001254748, intron 2 of 5)	intron (NM_001254748, intron 2 of 5)	31404	NR_045630	8490	Hs.24950	NM_003617	HPRD:04471	RGS5	MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129	regulator of G-protein signaling 5	protein-coding
19-PTNLD28-TUMOR_peak_54011	chr2	88958510	88958691	+	11.40978	NA	Intergenic	Intergenic	-31506	NM_004836	9451	Hs.591589	NM_004836	HPRD:04942	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2-alpha kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_84468	chr5	178966991	178967136	+	11.40978	NA	Intergenic	L1MA9|LINE|L1	-10499	NM_025158	80230	Hs.306769	NM_025158	HPRD:15282	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_67660	chr3	40626130	40626290	+	11.40978	NA	Intergenic	Intergenic	59841	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_31357	chr14	76120603	76120720	+	11.40978	NA	intron (NM_007176, intron 3 of 4)	intron (NM_007176, intron 3 of 4)	6877	NM_007176	11161	Hs.15106	NM_007176		C14orf1	ERG28|NET51	chromosome 14 open reading frame 1	protein-coding
19-PTNLD28-TUMOR_peak_91277	chr7	10743718	10743847	+	11.40978	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	236031	NM_002489	4697	Hs.50098	NM_002489	HPRD:04831	NDUFA4	CI-9k|CI-MLRQ|MLRQ	NDUFA4, mitochondrial complex associated	protein-coding
19-PTNLD28-TUMOR_peak_51572	chr2	24605389	24605520	+	11.40978	NA	Intergenic	Intergenic	-22057	NM_006277	50618	Hs.432562	NM_006277	HPRD:09193	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
19-PTNLD28-TUMOR_peak_77726	chr4	155320818	155320956	+	11.40978	NA	intron (NM_001142552, intron 1 of 7)	intron (NM_001142552, intron 1 of 7)	-8438	NM_017639	54798	Hs.655664	NM_017639	HPRD:10858	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
19-PTNLD28-TUMOR_peak_25465	chr12	81603725	81603897	+	11.40978	NA	intron (NM_024560, intron 9 of 15)	MER41B|LTR|ERV1	51644	NR_039848	100616133		NR_039848		MIR4699	-	microRNA 4699	ncRNA
19-PTNLD28-TUMOR_peak_79814	chr5	50933083	50933195	+	11.40978	NA	Intergenic	L1PA4|LINE|L1	-253973	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
19-PTNLD28-TUMOR_peak_15562	chr10	111134031	111134188	+	11.40978	NA	Intergenic	Intergenic	203694	NR_046928	100873762		NR_046928		RNU6-53P	RNU6-53	RNA, U6 small nuclear 53, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_51959	chr2	30596751	30596911	+	11.40978	NA	Intergenic	Intergenic	27319	NR_122048	285043	Hs.429119	NR_122048		LOC285043	-	uncharacterized LOC285043	ncRNA
19-PTNLD28-TUMOR_peak_84166	chr5	174629618	174629769	+	11.40978	NA	Intergenic	Intergenic	-206959	NR_046113	441116	Hs.533036	NM_001004348	HPRD:16911	FLJ16171	-	FLJ16171 protein	ncRNA
19-PTNLD28-TUMOR_peak_57573	chr2	195275779	195275945	+	11.40978	NA	intron (NR_110222, intron 4 of 5)	intron (NR_110222, intron 4 of 5)	66869	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LOC101927406	-	uncharacterized LOC101927406	ncRNA
19-PTNLD28-TUMOR_peak_83721	chr5	167661288	167661445	+	11.40978	NA	intron (NM_001122679, intron 25 of 28)	MLT1K|LTR|ERVL-MaLR	-1989	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_80535	chr5	70779278	70779429	+	11.40978	NA	intron (NM_018429, intron 7 of 38)	intron (NM_018429, intron 7 of 38)	27911	NM_018429	55814	Hs.258272	NM_018429	HPRD:06114	BDP1	HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
19-PTNLD28-TUMOR_peak_67714	chr3	42171193	42171356	+	11.40978	NA	intron (NM_001265608, intron 2 of 13)	MIR|SINE|MIR	-19453	NM_001265610	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_28095	chr13	45794110	45794403	+	11.40978	NA	intron (NM_004128, intron 5 of 7)	L2a|LINE|L2	-19081	NM_198404	386618	Hs.23406	NM_198404	HPRD:13767	KCTD4	bA321C24.3	potassium channel tetramerization domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_17055	chr11	9710870	9711007	+	11.40978	NA	intron (NM_015055, intron 1 of 11)	intron (NM_015055, intron 1 of 11)	25314	NM_015055	23075	Hs.153026	NM_015055	HPRD:10378	SWAP70	SWAP-70	SWAP switching B-cell complex 70kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_108963	chrX	100067452	100067632	+	11.40978	NA	Intergenic	L1PB1|LINE|L1	-7806	NM_001325	1478	Hs.132370	NM_001325	HPRD:02652	CSTF2	CstF-64	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa	protein-coding
19-PTNLD28-TUMOR_peak_18155	chr11	39868714	39868813	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	445917	NR_047674	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_93680	chr7	81442269	81442420	+	11.40978	NA	Intergenic	AluJb|SINE|Alu	-42892	NM_000601	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_56776	chr2	166430619	166430774	+	11.40978	NA	intron (NM_024969, intron 1 of 4)	intron (NM_024969, intron 1 of 4)	1850	NM_024969	80034	Hs.470479	NM_024969	HPRD:18144	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
19-PTNLD28-TUMOR_peak_25589	chr12	93349848	93349988	+	11.40978	NA	Intergenic	Intergenic	-26811	NM_003566	8411	Hs.567367	NM_003566	HPRD:05460	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_46481	chr19	355209	355447	+	11.40978	NA	Intergenic	L1M7|LINE|L1	-10537	NM_017550	54531	Hs.101891	NM_017550	HPRD:11130	MIER2	KIAA1193|Mi-er2	mesoderm induction early response 1, family member 2	protein-coding
19-PTNLD28-TUMOR_peak_65634	chr22	40984878	40984994	+	11.40978	NA	intron (NM_001282661, intron 2 of 13)	AluJo|SINE|Alu	47787	NM_001282662	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_68802	chr3	64973962	64974175	+	11.40978	NA	intron (NR_038264, intron 4 of 5)	intron (NR_038264, intron 4 of 5)	268385	NR_030317	693126		NR_030317	miRBase:MI0003598	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
19-PTNLD28-TUMOR_peak_102392	chr9	19541974	19542108	+	11.40978	NA	intron (NM_020344, intron 7 of 9)	L1PA2|LINE|L1	133116	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_77926	chr4	165728870	165729040	+	11.40978	NA	Intergenic	Intergenic	53672	NR_038834	100505989	Hs.328236	NR_038834	ENSG00000248771	LINC01207	-	long intergenic non-protein coding RNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_56781	chr2	166458525	166458700	+	11.40978	NA	intron (NM_024969, intron 2 of 4)	intron (NM_024969, intron 2 of 4)	29766	NM_024969	80034	Hs.470479	NM_024969	HPRD:18144	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine-serine-rich nuclear protein 3	protein-coding
19-PTNLD28-TUMOR_peak_79487	chr5	36079431	36079628	+	11.40978	NA	Intergenic	L1PA17|LINE|L1	-12506	NM_174914	167127	Hs.348941	NM_174914	HPRD:14111	UGT3A2	-	UDP glycosyltransferase 3 family, polypeptide A2	protein-coding
19-PTNLD28-TUMOR_peak_57641	chr2	197919292	197919449	+	11.40978	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-127916	NM_024989	80055	Hs.229988	NM_024989	HPRD:10147	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_40090	chr17	8257691	8257814	+	11.40978	NA	Intergenic	Intergenic	6107	NR_024447	100128288	Hs.549913	NR_024447	ENSG00000198150	LOC100128288	-	uncharacterized LOC100128288	ncRNA
19-PTNLD28-TUMOR_peak_68447	chr3	54592132	54592376	+	11.40978	NA	intron (NM_018398, intron 5 of 37)	intron (NM_018398, intron 5 of 37)	81630	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_92485	chr7	48194501	48194638	+	11.40978	NA	Intergenic	L1MEf|LINE|L1	-16488	NM_152701	154664	Hs.226568	NM_152701	HPRD:07422	ABCA13	-	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
19-PTNLD28-TUMOR_peak_91760	chr7	28398288	28398424	+	11.40978	NA	intron (NM_182899, intron 1 of 9)	AmnSINE1|SINE|Deu	-53788	NM_182898	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_16889	chr11	6724834	6724970	+	11.40978	NA	Intergenic	Intergenic	18208	NR_003945	387751	Hs.494757	NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_5774	chr1	116416012	116416296	+	11.40978	NA	Intergenic	Intergenic	-32407	NM_005599	4808	Hs.46296	NM_005599	HPRD:01213	NHLH2	HEN2|NSCL2|bHLHa34	nescient helix loop helix 2	protein-coding
19-PTNLD28-TUMOR_peak_77283	chr4	141419041	141419175	+	11.40978	NA	intron (NM_001277353, intron 1 of 10)	CpG	423	NM_001277353	152586	Hs.189067	NM_001034840	HPRD:18736	MGAT4D	-	MGAT4 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_52797	chr2	54330934	54331122	+	11.40978	NA	Intergenic	Intergenic	-11382	NM_138448	98	Hs.516173	NM_138448	HPRD:00028	ACYP2	ACYM|ACYP	acylphosphatase 2, muscle type	protein-coding
19-PTNLD28-TUMOR_peak_9925	chr1	211545146	211545290	+	11.40978	NA	intron (NM_001033910, intron 10 of 10)	intron (NM_001033910, intron 10 of 10)	-10879	NR_026761	84791	Hs.523932	NM_032705	HPRD:17500	LINC00467	C1orf97	long intergenic non-protein coding RNA 467	ncRNA
19-PTNLD28-TUMOR_peak_17400	chr11	15786610	15786737	+	11.40978	NA	Intergenic	MER5A|DNA|hAT-Charlie	121242	NM_001293172	102724957	Hs.512245	NM_001293172		LOC102724957	-	uncharacterized LOC102724957	protein-coding
19-PTNLD28-TUMOR_peak_68838	chr3	66124388	66124575	+	11.40978	NA	intron (NM_173471, intron 1 of 10)	intron (NM_173471, intron 1 of 10)	5196	NM_173471	115286	Hs.379386	NM_173471	HPRD:15357	SLC25A26	SAMC	solute carrier family 25 (S-adenosylmethionine carrier), member 26	protein-coding
19-PTNLD28-TUMOR_peak_64641	chr22	23009090	23009260	+	11.40978	NA	Intergenic	Intergenic	20393	NM_199127	91227	Hs.450000	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_17943	chr11	33879528	33879638	+	11.40978	NA	TTS (NM_005574)	TTS (NM_005574)	11788	NM_001142316	4005	Hs.34560	NM_005574	HPRD:01586	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2 (rhombotin-like 1)	protein-coding
19-PTNLD28-TUMOR_peak_32262	chr14	104515630	104515772	+	11.40978	NA	intron (NM_153046, intron 34 of 35)	intron (NM_153046, intron 34 of 35)	-36322	NM_001080464	374569	Hs.146239	NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT	asparaginase	protein-coding
19-PTNLD28-TUMOR_peak_99086	chr8	68375028	68375181	+	11.40978	NA	intron (NM_020361, intron 8 of 10)	L2b|LINE|L2	-119192	NM_006421	10565	Hs.656902	NM_006421	HPRD:09163	ARFGEF1	ARFGEP1|BIG1|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_30576	chr14	59594005	59594137	+	11.40978	NA	Intergenic	Intergenic	-61310	NM_001270520	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_56408	chr2	154797136	154797318	+	11.40978	NA	intron (NM_052917, intron 2 of 12)	intron (NM_052917, intron 2 of 12)	68801	NM_052917	114805	Hs.470277	NM_052917	HPRD:16325	GALNT13	GalNAc-T13	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
19-PTNLD28-TUMOR_peak_38184	chr16	64126330	64126472	+	11.40978	NA	Intergenic	Intergenic	1029518	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
19-PTNLD28-TUMOR_peak_109193	chrX	111623885	111624047	+	11.40978	NA	intron (NM_001004308, intron 2 of 2)	CpG	297713	NM_001004308	340595	Hs.368140	NM_001004308		ZCCHC16	Mar4|Mart4	zinc finger, CCHC domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_34776	chr15	80872484	80872676	+	11.40978	NA	promoter-TSS (NR_049837)	promoter-TSS (NR_049837)	-864	NR_049837	100847042		NR_049837		MIR5572	-	microRNA 5572	ncRNA
19-PTNLD28-TUMOR_peak_88194	chr6	64609579	64609730	+	11.40978	NA	intron (NM_001292009, intron 35 of 43)	L2b|LINE|L2	253223	NM_015153	23469	Hs.348921	NM_015153	HPRD:08477	PHF3	-	PHD finger protein 3	protein-coding
19-PTNLD28-TUMOR_peak_107571	chrX	13039605	13039746	+	11.40978	NA	Intergenic	L1M5|LINE|L1	23242	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_32947	chr15	33111189	33111315	+	11.40978	NA	intron (NM_001277313, intron 17 of 20)	intron (NM_001277313, intron 17 of 20)	-100186	NR_109767	100131315	Hs.610545	NR_109767		LOC100131315	-	uncharacterized LOC100131315	ncRNA
19-PTNLD28-TUMOR_peak_11275	chr1	240549731	240549949	+	11.40978	NA	intron (NM_020066, intron 14 of 17)	intron (NM_020066, intron 14 of 17)	225622	NM_022469	64388	Hs.98206	NM_022469	HPRD:16390	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_1662	chr1	26516940	26517082	+	11.40978	NA	promoter-TSS (NM_198137)	promoter-TSS (NM_198137)	-108	NM_198137	378807	Hs.123532	NM_198137	HPRD:18607	CATSPER4	-	cation channel, sperm associated 4	protein-coding
19-PTNLD28-TUMOR_peak_31588	chr14	88655826	88655934	+	11.40978	NA	intron (NM_021161, intron 5 of 6)	intron (NM_021161, intron 5 of 6)	81375	NM_138318	54207	Hs.560255	NM_021161		KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium channel, subfamily K, member 10	protein-coding
19-PTNLD28-TUMOR_peak_32982	chr15	33717483	33717647	+	11.40978	NA	intron (NM_001243996, intron 1 of 102)	intron (NM_001243996, intron 1 of 102)	114388	NM_001243996	6263	Hs.709373	NM_001036	HPRD:01620	RYR3	RYR-3	ryanodine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_17658	chr11	22688351	22688542	+	11.40978	NA	intron (NM_001143830, intron 1 of 7)	CpG	286	NM_001143830	2620	Hs.711297	NM_005256	HPRD:04158	GAS2	-	growth arrest-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_34017	chr15	65563364	65563520	+	11.40978	NA	intron (NM_017851, intron 1 of 5)	intron (NM_017851, intron 1 of 5)	15576	NM_017851	54956	Hs.30634	NM_017851	HPRD:07919	PARP16	ARTD15|C15orf30|pART15	poly (ADP-ribose) polymerase family, member 16	protein-coding
19-PTNLD28-TUMOR_peak_26706	chr12	121317002	121317180	+	11.40978	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	25064	NM_139015	121665	Hs.507087	NM_139015	HPRD:09744	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
19-PTNLD28-TUMOR_peak_82585	chr5	139390971	139391115	+	11.40978	NA	intron (NM_001184935, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	31841	NM_004883	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_89499	chr6	133253183	133253319	+	11.40978	NA	Intergenic	Intergenic	114893	NR_002436	594839	Hs.671378	NR_002436		SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
19-PTNLD28-TUMOR_peak_37935	chr16	55680056	55680157	+	11.40978	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-9436	NM_001172501	6530	Hs.78036	NM_001043	HPRD:01232	SLC6A2	NAT1|NET|NET1|SLC6A5	solute carrier family 6 (neurotransmitter transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_30919	chr14	68624977	68625107	+	11.40978	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	338546	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_31475	chr14	78471775	78471902	+	11.40978	NA	Intergenic	Intergenic	-164878	NR_073547	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_27928	chr13	40767480	40767615	+	11.40978	NA	Intergenic	Intergenic	11601	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
19-PTNLD28-TUMOR_peak_9828	chr1	207970802	207970916	+	11.40978	NA	Intergenic	Intergenic	4425	NR_029832	407026		NR_029832	miRBase:MI0000735	MIR29C	MIRN29C|miRNA29C	microRNA 29c	ncRNA
19-PTNLD28-TUMOR_peak_107603	chrX	13916849	13916976	+	11.40978	NA	intron (NM_001001994, intron 1 of 6)	intron (NM_001001994, intron 1 of 6)	39919	NM_001001994	2824	Hs.495710	NM_005278	HPRD:02082	GPM6B	M6B	glycoprotein M6B	protein-coding
19-PTNLD28-TUMOR_peak_65397	chr22	37624835	37625036	+	11.40978	NA	intron (NM_002872, intron 5 of 6)	intron (NM_002872, intron 5 of 6)	15404	NM_002872	5880	Hs.517601	NM_002872	HPRD:03628	RAC2	EN-7|Gx|HSPC022|p21-Rac2	ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)	protein-coding
19-PTNLD28-TUMOR_peak_88950	chr6	106551681	106551838	+	11.40978	NA	intron (NM_182907, intron 2 of 4)	intron (NM_182907, intron 2 of 4)	5022	NM_182907	639	Hs.436023	NM_001198	HPRD:04572	PRDM1	BLIMP1|PRDI-BF1	PR domain containing 1, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_4263	chr1	68523798	68523978	+	11.40978	NA	intron (NR_040077, intron 2 of 9)	LTR13|LTR|ERVK	-7428	NM_004675	9077	Hs.194695	NM_004675	HPRD:05547	DIRAS3	ARHI|NOEY2	DIRAS family, GTP-binding RAS-like 3	protein-coding
19-PTNLD28-TUMOR_peak_74704	chr4	20358313	20358450	+	11.40978	NA	intron (NM_001289135, intron 4 of 35)	intron (NM_001289135, intron 4 of 35)	-35431	NR_037876	100505893	Hs.665305	NR_037876		SLIT2-IT1	-	SLIT2 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_52480	chr2	44706687	44706825	+	11.40978	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	69903	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_61933	chr20	50267279	50267389	+	11.40978	NA	intron (NM_006045, intron 14 of 27)	intron (NM_006045, intron 14 of 27)	-87964	NM_001258294	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_89448	chr6	130481099	130481248	+	11.40978	NA	intron (NM_001017373, intron 8 of 11)	L1ME3F|LINE|L1	55857	NM_001277185	154075	Hs.440508	NM_152552	HPRD:11530	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_31688	chr14	91750540	91750675	+	11.40978	NA	intron (NM_001080414, intron 25 of 29)	intron (NM_001080414, intron 25 of 29)	-30383	NM_003485	8111	Hs.8882	NM_003485	HPRD:03241	GPR68	GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
19-PTNLD28-TUMOR_peak_101208	chr8	135379954	135380148	+	11.40978	NA	Intergenic	MER91C|DNA|hAT-Tip100	-230263	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98996	chr8	64402288	64402445	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-279622	NR_038875	286184	Hs.586402	NR_038875	ENSG00000253734	LINC01289	-	long intergenic non-protein coding RNA 1289	ncRNA
19-PTNLD28-TUMOR_peak_57435	chr2	190474324	190474441	+	11.40978	NA	Intergenic	Intergenic	-28845	NM_014585	30061	Hs.643005	NM_014585	HPRD:05229	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_38432	chr16	68622855	68623011	+	11.40978	NA	Intergenic	L1HS|LINE|L1	49272	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_4964	chr1	94294012	94294133	+	11.40978	NA	intron (NM_001261408, intron 2 of 13)	MER39|LTR|ERV1	-18316	NR_030621	100126348		NR_030621	miRBase:MI0005567	MIR760	MIRN760|hsa-mir-760	microRNA 760	ncRNA
19-PTNLD28-TUMOR_peak_80641	chr5	72969042	72969180	+	11.40978	NA	intron (NM_001080479, intron 1 of 36)	intron (NM_001080479, intron 1 of 36)	47128	NM_001080479	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_34421	chr15	73856805	73856972	+	11.40978	NA	intron (NM_017455, intron 5 of 7)	intron (NM_017455, intron 5 of 7)	4996	NR_103844	101241892	Hs.656678	NR_103844		NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_30717	chr14	63690928	63691203	+	11.40978	NA	intron (NM_020663, intron 1 of 4)	intron (NM_020663, intron 1 of 4)	19963	NM_020663	57381	Hs.656339	NM_020663	HPRD:09632	RHOJ	ARHJ|RASL7B|TC10B|TCL	ras homolog family member J	protein-coding
19-PTNLD28-TUMOR_peak_108377	chrX	53100860	53101027	+	11.40978	NA	intron (NM_018969, intron 1 of 1)	intron (NM_018969, intron 1 of 1)	-10599	NM_022117	64061	Hs.136164	NM_022117	HPRD:06713	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY-like 2	protein-coding
19-PTNLD28-TUMOR_peak_81435	chr5	106667731	106667931	+	11.40978	NA	Intergenic	Intergenic	-321116	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_37746	chr16	50244587	50244737	+	11.40978	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	-55789	NM_001286057	113	Hs.513578	NM_001114	HPRD:02663	ADCY7	AC7	adenylate cyclase 7	protein-coding
19-PTNLD28-TUMOR_peak_10147	chr1	220853537	220853704	+	11.40978	NA	Intergenic	Intergenic	-10008	NM_024709	79762	Hs.519839	NM_024709	HPRD:08596	C1orf115	-	chromosome 1 open reading frame 115	protein-coding
19-PTNLD28-TUMOR_peak_108851	chrX	82890204	82890451	+	11.40978	NA	Intergenic	LTR13|LTR|ERVK	127058	NM_000307	5456	Hs.2229	NM_000307	HPRD:02076	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_103338	chr9	45867103	45867238	+	11.40978	NA	Intergenic	Intergenic	-249773	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_57241	chr2	180311669	180311838	+	11.40978	NA	intron (NM_152520, intron 6 of 9)	intron (NM_152520, intron 6 of 9)	115562	NM_001113398	151126	Hs.655005	NM_152520	HPRD:15823	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
19-PTNLD28-TUMOR_peak_86059	chr6	25890782	25890937	+	11.40978	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-16388	NM_006632	10786	Hs.327179	NM_006632	HPRD:10233	SLC17A3	NPT4	solute carrier family 17 (organic anion transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_76968	chr4	125255379	125255511	+	11.40978	NA	Intergenic	Intergenic	224144	NR_110838	101927087	Hs.518966	NR_110838	ENSG00000261083	LOC101927087	-	uncharacterized LOC101927087	ncRNA
19-PTNLD28-TUMOR_peak_94235	chr7	99407269	99407387	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-18308	NM_057095	64816	Hs.306220	NM_022820	HPRD:05942	CYP3A43	-	cytochrome P450, family 3, subfamily A, polypeptide 43	protein-coding
19-PTNLD28-TUMOR_peak_27589	chr13	28400762	28400944	+	11.40978	NA	Intergenic	Intergenic	34073	NM_145657	219409	Hs.351785	NM_145657		GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_15663	chr10	113749331	113749504	+	11.40978	NA	Intergenic	Intergenic	194120	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_42359	chr17	52968629	52968830	+	11.40978	NA	Intergenic	Intergenic	-9323	NM_005486	10040	Hs.153504	NM_005486	HPRD:05266	TOM1L1	OK/KNS-CL.3|SRCASM	target of myb1 (chicken)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_69269	chr3	87904919	87905017	+	11.40978	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-126758	NM_000866	3355	Hs.248136	NM_000866		HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_41084	chr17	33721463	33721565	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	-20794	NM_152270	91607	Hs.745059	NM_152270	HPRD:08178	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
19-PTNLD28-TUMOR_peak_14652	chr10	84109243	84109343	+	11.40978	NA	intron (NM_001165973, intron 2 of 10)	L1PA2|LINE|L1	-116617	NR_120666	101929590	Hs.733268	NR_120666		NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107463	chrX	7182137	7182284	+	11.40978	NA	intron (NM_000351, intron 5 of 9)	intron (NM_000351, intron 5 of 9)	44738	NM_000351	412	Hs.522578	NM_000351	HPRD:02389	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase (microsomal), isozyme S	protein-coding
19-PTNLD28-TUMOR_peak_10111	chr1	219813704	219813872	+	11.40978	NA	Intergenic	L1MA3|LINE|L1	-232831	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_3856	chr1	59755918	59756127	+	11.40978	NA	Intergenic	Intergenic	-6603	NM_001113411	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_34423	chr15	73892389	73892531	+	11.40978	NA	intron (NM_012428, intron 1 of 8)	intron (NM_012428, intron 1 of 8)	-30576	NR_103844	101241892	Hs.656678	NR_103844		NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_46223	chr18	68132098	68132300	+	11.40978	NA	Intergenic	Intergenic	-80372	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_60231	chr20	23870472	23870572	+	11.40978	NA	Intergenic	Intergenic	-10142	NM_001900	1473	Hs.121489	NM_001900	HPRD:00463	CST5	-	cystatin D	protein-coding
19-PTNLD28-TUMOR_peak_40778	chr17	26821844	26821966	+	11.40978	NA	intron (NR_027384, intron 10 of 12)	intron (NR_027384, intron 10 of 12)	21241	NR_027384	9058	Hs.102307	NM_003984	HPRD:09164	SLC13A2	NADC1|NaCT|NaDC-1|SDCT1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_9865	chr1	209162182	209162382	+	11.40978	NA	Intergenic	Intergenic	-439886	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_4407	chr1	76796765	76796975	+	11.40978	NA	intron (NM_152996, intron 2 of 4)	intron (NM_152996, intron 2 of 4)	256481	NM_001160011	256435	Hs.337040	NM_152996		ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_28166	chr13	47237436	47237537	+	11.40978	NA	intron (NM_001164211, intron 2 of 19)	intron (NM_001164211, intron 2 of 19)	110190	NM_015116	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16013	chr10	123399019	123399135	+	11.40978	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-41105	NR_073009	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_40583	chr17	19665945	19666077	+	11.40978	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-14265	NM_000691	218	Hs.531682	NM_000691	HPRD:00004	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_19157	chr11	64257420	64257549	+	11.40978	NA	Intergenic	Intergenic	40955	NR_073177	100996455	Hs.634142	NR_073177	ENSG00000181908	LOC100996455	-	uncharacterized LOC100996455	ncRNA
19-PTNLD28-TUMOR_peak_13469	chr10	48778366	48778492	+	11.40978	NA	intron (NM_001042357, intron 4 of 9).2	Tigger7|DNA|TcMar-Tigger	28556	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_22244	chr11	131328822	131328928	+	11.40978	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	81886	NR_110140	101929653	Hs.559159	NR_110140	ENSG00000237654	LOC101929653	-	uncharacterized LOC101929653	ncRNA
19-PTNLD28-TUMOR_peak_38467	chr16	69146716	69146821	+	11.40978	NA	intron (NM_005329, intron 2 of 3)	intron (NM_005329, intron 2 of 3)	5325	NM_005329	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_68406	chr3	53578518	53578639	+	11.40978	NA	intron (NM_000720, intron 3 of 48)	intron (NM_000720, intron 3 of 48)	49502	NM_000720	776	Hs.476358	NM_000720	HPRD:00247	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding
19-PTNLD28-TUMOR_peak_77652	chr4	153771613	153771832	+	11.40978	NA	intron (NM_001025593, intron 2 of 7)	intron (NM_001025593, intron 2 of 7)	70633	NM_014447	27236	Hs.416089	NM_014447	HPRD:09331	ARFIP1	HSU52521	ADP-ribosylation factor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45456	chr18	43302972	43303132	+	11.40978	NA	Intergenic	Intergenic	-1040	NM_001128588	6563	Hs.101307	NM_015865	HPRD:00195	SLC14A1	HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	protein-coding
19-PTNLD28-TUMOR_peak_66089	chr22	50557202	50557476	+	11.40978	NA	intron (NM_018995, intron 9 of 26)	LTR45C|LTR|ERV1	-28145	NM_001164106	54456	Hs.62880	NM_018995	HPRD:16158	MOV10L1	CHAMP|DJ402G11.8	Mov10 RISC complex RNA helicase like 1	protein-coding
19-PTNLD28-TUMOR_peak_59697	chr20	6901940	6902104	+	11.40978	NA	Intergenic	Intergenic	153277	NM_001200	650	Hs.73853	NM_001200	HPRD:00206	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
19-PTNLD28-TUMOR_peak_50167	chr19	53407883	53407990	+	11.40978	NA	Intergenic	LTR2B|LTR|ERV1	-13337	NM_207333	162967	Hs.369632	NM_207333	HPRD:18506	ZNF320	ZFPL	zinc finger protein 320	protein-coding
19-PTNLD28-TUMOR_peak_4757	chr1	89664500	89664694	+	11.40978	NA	promoter-TSS (NM_052941)	promoter-TSS (NM_052941)	36	NM_052941	115361	Hs.409925	NM_052941	HPRD:13570	GBP4	Mpa2	guanylate binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_105141	chr9	108418493	108418613	+	11.40978	NA	Intergenic	CpG	-6185	NM_005421	6887	Hs.247978	NM_005421	HPRD:01735	TAL2	-	T-cell acute lymphocytic leukemia 2	protein-coding
19-PTNLD28-TUMOR_peak_93053	chr7	69764231	69764363	+	11.40978	NA	intron (NM_001127231, intron 4 of 17)	intron (NM_001127231, intron 4 of 17)	700392	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_29958	chr14	37411560	37411659	+	11.40978	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	9987	NR_039725	100616280		NR_039725		MIR4503	-	microRNA 4503	ncRNA
19-PTNLD28-TUMOR_peak_67886	chr3	45754069	45754308	+	11.40978	NA	intron (NM_014016, intron 5 of 19)	L2b|LINE|L2	23434	NM_014016	22908	Hs.156509	NM_014016	HPRD:07587	SACM1L	SAC1	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_15994	chr10	122961695	122961857	+	11.40978	NA	Intergenic	Intergenic	-351085	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88425	chr6	77743948	77744122	+	11.40978	NA	Intergenic	LTR16C|LTR|ERVL	429085	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_70128	chr3	121811486	121811582	+	11.40978	NA	intron (NM_001206924, intron 2 of 5)	intron (NM_001206924, intron 2 of 5)	14838	NM_176892	942	Hs.171182	NM_006889	HPRD:03011	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
19-PTNLD28-TUMOR_peak_94063	chr7	96036859	96037048	+	11.40978	NA	Intergenic	Intergenic	-85494	NR_027662	10165	Hs.489190	NM_014251	HPRD:04837	SLC25A13	ARALAR2|CITRIN|CTLN2	solute carrier family 25 (aspartate/glutamate carrier), member 13	protein-coding
19-PTNLD28-TUMOR_peak_62144	chr20	53734216	53734371	+	11.40978	NA	Intergenic	LTR2B|LTR|ERV1	-305288	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_90870	chr7	1922972	1923133	+	11.40978	NA	intron (NM_001013836, intron 18 of 18)	intron (NM_001013836, intron 18 of 18)	-39163	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	ncRNA
19-PTNLD28-TUMOR_peak_32760	chr15	29888616	29888723	+	11.40978	NA	Intergenic	L1MC3|LINE|L1	-25742	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_55851	chr2	134104350	134104547	+	11.40978	NA	intron (NM_207481, intron 3 of 17)	intron (NM_207481, intron 3 of 17)	80681	NR_110294	101928161	Hs.661917	NR_110294	ENSG00000226953	LOC101928161	-	uncharacterized LOC101928161	ncRNA
19-PTNLD28-TUMOR_peak_30653	chr14	61828925	61829050	+	11.40978	NA	intron (NM_006255, intron 1 of 13)	AluJo|SINE|Alu	40826	NM_006255	5583	Hs.333907	NM_006255	HPRD:05669	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C, eta	protein-coding
19-PTNLD28-TUMOR_peak_108086	chrX	44687318	44687466	+	11.40978	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-15857	NM_022076	63904	Hs.534478	NM_022076	HPRD:06494	DUSP21	LMWDSP21	dual specificity phosphatase 21	protein-coding
19-PTNLD28-TUMOR_peak_28177	chr13	48074034	48074173	+	11.40978	NA	Intergenic	Intergenic	501359	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_33838	chr15	60952829	60953010	+	11.40978	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-20849	NR_120319	100996876	Hs.511626	NR_120318		LOC100996876	-	uncharacterized LOC100996876	ncRNA
19-PTNLD28-TUMOR_peak_45140	chr18	30294667	30294784	+	11.40978	NA	intron (NM_020805, intron 3 of 8)	intron (NM_020805, intron 3 of 8)	58249	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_99203	chr8	74103602	74103732	+	11.40978	NA	Intergenic	Intergenic	68070	NM_001243237	100130301	Hs.202296	NM_001243237		LOC100130301	-	uncharacterized LOC100130301	protein-coding
19-PTNLD28-TUMOR_peak_95008	chr7	123283970	123284147	+	11.40978	NA	Intergenic	Intergenic	-11803	NM_207163	442721	Hs.592260	NM_207163	ENSG00000170807	LMOD2	C-LMOD	leiomodin 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_67088	chr3	21336359	21336520	+	11.40978	NA	Intergenic	Intergenic	-110779	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_67715	chr3	42191649	42191819	+	11.40978	NA	intron (NM_001265610, intron 1 of 11)	intron (NM_001265610, intron 1 of 11)	1007	NM_001265609	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_38253	chr16	66775492	66775655	+	11.40978	NA	intron (NM_001286157, intron 3 of 11)	intron (NM_001286157, intron 3 of 11)	9952	NM_006141	1783	Hs.369068	NM_006141	HPRD:09923	DYNC1LI2	DNCLI2|LIC2	dynein, cytoplasmic 1, light intermediate chain 2	protein-coding
19-PTNLD28-TUMOR_peak_69212	chr3	81379145	81379374	+	11.40978	NA	Intergenic	LTR14C|LTR|ERVK	431691	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_57162	chr2	178013767	178013887	+	11.40978	NA	Intergenic	Intergenic	-63595	NM_194247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
19-PTNLD28-TUMOR_peak_92597	chr7	54064744	54064859	+	11.40978	NA	Intergenic	HAL1|LINE|L1	-185177	NR_038371	401337	Hs.531378	NM_001001707	HPRD:16997	LINC01446	GS1-179L18.1	long intergenic non-protein coding RNA 1446	ncRNA
19-PTNLD28-TUMOR_peak_101980	chr9	2800925	2801061	+	11.40978	NA	Intergenic	AluJb|SINE|Alu	43137	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_55376	chr2	121405201	121405303	+	11.40978	NA	Intergenic	L1MC4|LINE|L1	-149615	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_41190	chr17	36077322	36077440	+	11.40978	NA	intron (NM_000458, intron 4 of 8)	intron (NM_000458, intron 4 of 8)	27715	NM_000458	6928	Hs.191144	NM_000458	HPRD:08926	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
19-PTNLD28-TUMOR_peak_24607	chr12	55604652	55604765	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	-10101	NM_001005280	121364	Hs.554557	NM_001005280	HPRD:14883	OR10A7	OR12-6	olfactory receptor, family 10, subfamily A, member 7	protein-coding
19-PTNLD28-TUMOR_peak_107426	chrX	3868496	3868678	+	11.40978	NA	Intergenic	Intergenic	-106652	NR_034031	389906	Hs.636199	NR_034031		LOC389906	-	zinc finger protein 839 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52811	chr2	54698716	54698837	+	11.40978	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	15322	NM_003128	6711	Hs.503178	NM_003128	HPRD:01683	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_34445	chr15	74243609	74243712	+	11.40978	NA	intron (NM_005576, intron 6 of 6)	intron (NM_005576, intron 6 of 6)	-23071	NR_040068	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69202	chr3	80239322	80239566	+	11.40978	NA	Intergenic	HERVL40-int|LTR|ERVL	-422385	NM_002941	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_60693	chr20	33803145	33803390	+	11.40978	NA	Intergenic	Intergenic	-11272	NM_006690	10893	Hs.715494	NM_006690	HPRD:05338	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_42790	chr17	60885504	60885816	+	11.40978	NA	promoter-TSS (NM_152598)	promoter-TSS (NM_152598)	82	NM_001288779	162333	Hs.665663	NM_152598	HPRD:08762	MARCH10	MARCH-X|RNF190	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_34226	chr15	69768243	69768335	+	11.40978	NA	Intergenic	Intergenic	23130	NM_001003	6176	Hs.356502	NM_001003	HPRD:01611	RPLP1	LP1|P1|RPP1	ribosomal protein, large, P1	protein-coding
19-PTNLD28-TUMOR_peak_89069	chr6	110265779	110265885	+	11.40978	NA	Intergenic	Intergenic	-33627	NM_005284	2830	Hs.46332	NM_005284	HPRD:02775	GPR6	-	G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_30044	chr14	42662456	42662633	+	11.40978	NA	Intergenic	Intergenic	585780	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_62102	chr20	52713389	52713523	+	11.40978	NA	Intergenic	Intergenic	-26152	NM_003657	8537	Hs.400556	NM_003657	HPRD:04273	BCAS1	AIBC1|NABC1	breast carcinoma amplified sequence 1	protein-coding
19-PTNLD28-TUMOR_peak_89475	chr6	132231248	132231346	+	11.40978	NA	Intergenic	Intergenic	41221	NM_001901	1490	Hs.410037	NM_001901	HPRD:00412	CTGF	CCN2|HCS24|IGFBP8|NOV2	connective tissue growth factor	protein-coding
19-PTNLD28-TUMOR_peak_35361	chr15	96693586	96693729	+	11.40978	NA	intron (NR_125738, intron 3 of 4)	intron (NR_125738, intron 3 of 4)	-175500	NM_001145155	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_76420	chr4	103061166	103061409	+	11.40978	NA	Intergenic	Intergenic	184182	NM_001135148	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_51728	chr2	27414525	27414631	+	11.40978	NA	Intergenic	Intergenic	-20321	NM_080592	51374	Hs.9527	NM_016085	HPRD:16652	ATRAID	APR--3|APR-3|APR3|C2orf28|PRO240|p18	all-trans retinoic acid-induced differentiation factor	protein-coding
19-PTNLD28-TUMOR_peak_100050	chr8	108253247	108253370	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	256946	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_92985	chr7	67343619	67343764	+	11.40978	NA	Intergenic	AluY|SINE|Alu	-141549	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_52113	chr2	36678058	36678236	+	11.40978	NA	intron (NM_016441, intron 4 of 16)	intron (NM_016441, intron 4 of 16)	94777	NM_016441	51232	Hs.699247	NM_016441	HPRD:08392	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
19-PTNLD28-TUMOR_peak_21389	chr11	116603562	116603683	+	11.40978	NA	Intergenic	Intergenic	40092	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_31748	chr14	93091641	93091915	+	11.40978	NA	intron (NM_024832, intron 4 of 9)	HERVI-int|LTR|ERV1	111653	NM_024832	79890	Hs.326822	NM_024832	HPRD:11494	RIN3	-	Ras and Rab interactor 3	protein-coding
19-PTNLD28-TUMOR_peak_98931	chr8	60001116	60001413	+	11.40978	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	30503	NM_014729	9760	Hs.491805	NM_014729	HPRD:12113	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
19-PTNLD28-TUMOR_peak_31344	chr14	75943359	75943571	+	11.40978	NA	Intergenic	ERVL-E-int|LTR|ERVL	44628	NM_001135049	122953	Hs.196482	NM_130469	HPRD:16360	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
19-PTNLD28-TUMOR_peak_4061	chr1	64400993	64401128	+	11.40978	NA	intron (NM_001083592, intron 1 of 6)	intron (NM_001083592, intron 1 of 6)	161370	NM_001083592	4919	Hs.128753	NM_005012	HPRD:03821	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_20507	chr11	88720171	88720323	+	11.40978	NA	intron (NM_001143831, intron 1 of 8)	L1PA4|LINE|L1	60993	NM_001143831	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate receptor, metabotropic 5	protein-coding
19-PTNLD28-TUMOR_peak_15390	chr10	104829433	104829579	+	11.40978	NA	intron (NM_199076, intron 5 of 6)	intron (NM_199076, intron 5 of 6)	123557	NM_012229	22978	Hs.97439	NM_012229	HPRD:02686	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
19-PTNLD28-TUMOR_peak_26535	chr12	117879653	117879806	+	11.40978	NA	Intergenic	Intergenic	-80122	NM_001204218	4842	Hs.654410	NM_000620	HPRD:01226	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_26369	chr12	112636084	112636219	+	11.40978	NA	intron (NM_001109662, intron 55 of 75)	intron (NM_001109662, intron 55 of 75)	-35026	NR_106921	102465519		NR_106921		MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
19-PTNLD28-TUMOR_peak_29930	chr14	36397056	36397299	+	11.40978	NA	Intergenic	Intergenic	101580	NM_032352	84312	Hs.525299	NM_032352	HPRD:16564	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_8708	chr1	182944104	182944261	+	11.40978	NA	Intergenic	L2a|LINE|L2	-21629	NM_030933	81626	Hs.497034	NM_030933	HPRD:16634	SHCBP1L	C1orf14|GE36	SHC SH2-domain binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_102352	chr9	18597035	18597176	+	11.40978	NA	intron (NM_001040272, intron 4 of 28)	intron (NM_001040272, intron 4 of 28)	23801	NR_036107	100422869		NR_036107		MIR3152	-	microRNA 3152	ncRNA
19-PTNLD28-TUMOR_peak_93707	chr7	82689698	82689872	+	11.40978	NA	intron (NM_033026, intron 3 of 24)	intron (NM_033026, intron 3 of 24)	102412	NM_014510	27445	Hs.12376	NM_014510	HPRD:16078	PCLO	ACZ	piccolo presynaptic cytomatrix protein	protein-coding
19-PTNLD28-TUMOR_peak_72146	chr3	163748087	163748240	+	11.40978	NA	Intergenic	MER39|LTR|ERV1	-727074	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_9834	chr1	208063639	208064031	+	11.40978	NA	intron (NM_001025109, intron 4 of 7)	intron (NM_001025109, intron 4 of 7)	20848	NM_001025109	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
19-PTNLD28-TUMOR_peak_27704	chr13	31287415	31287573	+	11.40978	NA	promoter-TSS (NM_001204406)	promoter-TSS (NM_001204406)	-121	NM_001204406	241	Hs.507658	NM_001629	HPRD:04742	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
19-PTNLD28-TUMOR_peak_85536	chr6	14067078	14067281	+	11.40978	NA	Intergenic	Intergenic	-50308	NM_001251901	9308	Hs.595133	NM_004233	HPRD:05170	CD83	BL11|HB15	CD83 molecule	protein-coding
19-PTNLD28-TUMOR_peak_72270	chr3	170158290	170158451	+	11.40978	NA	Intergenic	Intergenic	17479	NR_106886	102465497		NR_106886		MIR6828	hsa-mir-6828	microRNA 6828	ncRNA
19-PTNLD28-TUMOR_peak_80151	chr5	60348824	60348946	+	11.40978	NA	intron (NM_174889, intron 1 of 3)	MLT1J1|LTR|ERVL-MaLR	107929	NM_174889	91942	Hs.591757	NM_174889	HPRD:14288	NDUFAF2	B17.2L|MMTN|NDUFA12L|mimitin	NADH dehydrogenase (ubiquinone) complex I, assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_33432	chr15	45534834	45534948	+	11.40978	NA	Intergenic	LTR14C|LTR|ERVK	-9537	NM_004212	9153	Hs.367833	NM_004212	HPRD:07069	SLC28A2	CNT2|HCNT2|HsT17153|SPNT1	solute carrier family 28 (concentrative nucleoside transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_7809	chr1	163716604	163716782	+	11.40978	NA	Intergenic	Intergenic	-323712	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30057	chr14	44008546	44008654	+	11.40978	NA	Intergenic	LTR30|LTR|ERV1	967899	NM_032135	84075	Hs.307086	NM_032135	HPRD:12638	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19-PTNLD28-TUMOR_peak_100049	chr8	108252924	108253074	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	257255	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_15548	chr10	110075377	110075494	+	11.40978	NA	Intergenic	L1HS|LINE|L1	-246384	NR_125760	103695365	Hs.648991	NR_125760		LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
19-PTNLD28-TUMOR_peak_62847	chr21	17566433	17566653	+	11.40978	NA	promoter-TSS (NR_027791)	promoter-TSS (NR_027791)	-156	NR_027791	388815	Hs.473394	NM_001005732	HPRD:10746	MIR99AHG	C21orf34|C21orf35|FLJ38295|LINC00478|MONC	mir-99a-let-7c cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_32403	chr14	106653332	106653515	+	11.40978	NA	Intergenic	Intergenic	-90846	NR_033375	338004	Hs.569411	NR_033375	ENSG00000229084	LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
19-PTNLD28-TUMOR_peak_35496	chr15	101227788	101228186	+	11.40978	NA	Intergenic	Intergenic	85232	NM_198243	140460	Hs.31845	NM_024708	HPRD:10674	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
19-PTNLD28-TUMOR_peak_18672	chr11	57441821	57441969	+	11.40978	NA	intron (NM_015457, intron 2 of 11)	intron (NM_015457, intron 2 of 11)	6421	NM_015457	25921	Hs.27239	NM_015457	HPRD:15720	ZDHHC5	DHHC5|ZNF375	zinc finger, DHHC-type containing 5	protein-coding
19-PTNLD28-TUMOR_peak_16929	chr11	7914413	7914625	+	11.40978	NA	intron (NR_036678, intron 1 of 7)	intron (NR_036678, intron 1 of 7)	12983	NR_036678	283299	Hs.501825	NM_001190788	ENSG00000254951	LOC283299	-	uncharacterized LOC283299	ncRNA
19-PTNLD28-TUMOR_peak_99584	chr8	96510749	96510996	+	11.40978	NA	intron (NR_038207, intron 2 of 2)	intron (NR_038207, intron 2 of 2)	-229410	NM_177965	157657	Hs.548157	NM_177965	HPRD:14104	C8orf37	CORD16|RP64|smalltalk	chromosome 8 open reading frame 37	protein-coding
19-PTNLD28-TUMOR_peak_22445	chr12	1780229	1780422	+	11.40978	NA	Intergenic	Intergenic	-10779	NR_037422	100500816		NR_037422	miRBase:MI0016049	MIR3649	-	microRNA 3649	ncRNA
19-PTNLD28-TUMOR_peak_35130	chr15	89600871	89600991	+	11.40978	NA	Intergenic	Intergenic	-30450	NM_007011	11057	Hs.122337	NM_007011	HPRD:09791	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45837	chr18	52989063	52989235	+	11.40978	NA	promoter-TSS (NM_001243235)	promoter-TSS (NM_001243235)	-59	NM_001243234	6925	Hs.605153	NM_003199	HPRD:03780	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_65269	chr22	35754055	35754189	+	11.40978	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-21330	NR_106717	102464824		NR_106717		MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
19-PTNLD28-TUMOR_peak_110056	chrX	154948709	154948841	+	11.40978	NA	Intergenic	L1MA3|LINE|L1	-48676	NM_005840	10251	Hs.381912	NM_005840	HPRD:03917	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_53655	chr2	79247252	79247474	+	11.40978	NA	Intergenic	Intergenic	-5449	NM_001008387	130120	Hs.447084	NM_198448	HPRD:10137	REG3G	LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429	regenerating islet-derived 3 gamma	protein-coding
19-PTNLD28-TUMOR_peak_27235	chr12	132001428	132001544	+	11.40978	NA	Intergenic	LTR13A|LTR|ERVK	169471	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_15077	chr10	98797225	98797325	+	11.40978	NA	intron (NM_003061, intron 22 of 36)	intron (NM_003061, intron 22 of 36)	56234	NM_015652	26148	Hs.14555	NM_015652	HPRD:12563	C10orf12	-	chromosome 10 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_66197	chr3	2515326	2515499	+	11.40978	NA	intron (NM_175607, intron 3 of 24)	intron (NM_175607, intron 3 of 24)	234899	NM_001206955	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_25229	chr12	70310835	70310941	+	11.40978	NA	Intergenic	L2c|LINE|L2	138156	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_45126	chr18	29869626	29869756	+	11.40978	NA	intron (NM_001242409, intron 3 of 5)	MER20|DNA|hAT-Charlie	99704	NM_005925	4225	Hs.194777	NM_005925	HPRD:02667	MEP1B	-	meprin A, beta	protein-coding
19-PTNLD28-TUMOR_peak_65132	chr22	31625607	31625953	+	11.40978	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	17530	NM_005569	3985	Hs.474596	NM_005569	HPRD:03585	LIMK2	-	LIM domain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_31628	chr14	90388646	90388790	+	11.40978	NA	TTS (NM_001284266)	TTS (NM_001284266)	32183	NM_001284269	90141	Hs.123232	NM_145231	HPRD:16609	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
19-PTNLD28-TUMOR_peak_34993	chr15	85421883	85422013	+	11.40978	NA	Intergenic	Intergenic	-5944	NM_004213	9154	Hs.459187	NM_004213	HPRD:07068	SLC28A1	CNT1|HCNT1	solute carrier family 28 (concentrative nucleoside transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_9913	chr1	210547409	210547518	+	11.40978	NA	intron (NM_018194, intron 3 of 11)	intron (NM_018194, intron 3 of 11)	44823	NM_001170580	55733	Hs.58650	NM_018194	HPRD:12041	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_56763	chr2	165837918	165838025	+	11.40978	NA	Intergenic	L2a|LINE|L2	-25936	NM_173512	151258	Hs.658702	NM_173512	HPRD:08267	SLC38A11	AVT2	solute carrier family 38, member 11	protein-coding
19-PTNLD28-TUMOR_peak_25597	chr12	93638005	93638182	+	11.40978	NA	intron (NR_040096, intron 2 of 4)	Tigger12|DNA|TcMar-Tigger	69951	NR_120492	102724933	Hs.663947	NR_120492		LOC102724933	-	uncharacterized LOC102724933	ncRNA
19-PTNLD28-TUMOR_peak_34778	chr15	80908251	80908698	+	11.40978	NA	Intergenic	Intergenic	35030	NR_049837	100847042		NR_049837		MIR5572	-	microRNA 5572	ncRNA
19-PTNLD28-TUMOR_peak_32084	chr14	101112107	101112264	+	11.40978	NA	Intergenic	LTR41|LTR|ERVL	-11420	NR_024096	283601	Hs.379802	NM_001007560	HPRD:16621	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
19-PTNLD28-TUMOR_peak_57894	chr2	203680888	203681026	+	11.40978	NA	intron (NM_001288622, intron 6 of 12)	intron (NM_001288622, intron 6 of 12)	13000	NM_001288624	130026	Hs.516629	NM_138468	HPRD:12446	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_18031	chr11	34785958	34786061	+	11.40978	NA	Intergenic	L1P1|LINE|L1	131998	NM_001206616	26298	Hs.653859	NM_012153		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
19-PTNLD28-TUMOR_peak_42320	chr17	49304457	49304590	+	11.40978	NA	intron (NM_017643, intron 2 of 16)	AluY|SINE|Alu	32904	NM_017643	54799	Hs.656803	NM_017643	HPRD:14369	MBTD1	SA49P01	mbt domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23301	chr12	18901045	18901212	+	11.40978	NA	Intergenic	Intergenic	10083	NM_033328	93661	Hs.131288	NM_033328	HPRD:12282	CAPZA3	CAPPA3|Gsg3	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_30228	chr14	50988308	50988430	+	11.40978	NA	intron (NM_006575, intron 2 of 31)	intron (NM_006575, intron 2 of 31)	11007	NM_006575	11183	Hs.130491	NM_006575	HPRD:05374	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_93752	chr7	84743783	84744018	+	11.40978	NA	intron (NM_152754, intron 1 of 16)	intron (NM_152754, intron 1 of 16)	7347	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_88653	chr6	88101170	88101292	+	11.40978	NA	Intergenic	Intergenic	-5611	NR_026784	63914	Hs.645177	NM_022084	ENSG00000203871	C6orf164	dJ102H19.4	chromosome 6 open reading frame 164	ncRNA
19-PTNLD28-TUMOR_peak_81460	chr5	107419854	107420062	+	11.40978	NA	intron (NM_001163315, intron 6 of 8)	intron (NM_001163315, intron 6 of 8)	297841	NM_001163315	64839	Hs.657225	NM_022824	HPRD:10950	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine-rich repeat protein 17	protein-coding
19-PTNLD28-TUMOR_peak_56086	chr2	141215145	141215437	+	11.40978	NA	intron (NM_018557, intron 60 of 90)	intron (NM_018557, intron 60 of 90)	1560397	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_76356	chr4	99724054	99724327	+	11.40978	NA	Intergenic	MER124|DNA?|DNA?	126053	NM_001130678	1977	Hs.249718	NM_001968		EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F	eukaryotic translation initiation factor 4E	protein-coding
19-PTNLD28-TUMOR_peak_40166	chr17	9580228	9580374	+	11.40978	NA	intron (NM_153210, intron 5 of 14)	intron (NM_153210, intron 5 of 14)	31447	NM_001267576	124739	Hs.709621	NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
19-PTNLD28-TUMOR_peak_67969	chr3	47155610	47155770	+	11.40978	NA	intron (NM_014159, intron 4 of 20)	intron (NM_014159, intron 4 of 20)	49777	NM_014159	29072	Hs.517941	NM_012271	HPRD:11043	SETD2	HBP231|HIF-1|HIP-1|HYPB|KMT3A|SET2|p231HBP	SET domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_103712	chr9	72169870	72169997	+	11.40978	NA	intron (NM_001163, intron 1 of 12)	intron (NM_001163, intron 1 of 12)	117342	NM_001163	320	Hs.171939	NM_001163	HPRD:03879	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_76786	chr4	119963237	119963347	+	11.40978	NA	intron (NM_001286754, intron 4 of 4)	intron (NM_001286754, intron 4 of 4)	-93647	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_4376	chr1	75452652	75452804	+	11.40978	NA	Intergenic	L1PA4|LINE|L1	-141391	NM_001001933	431707	Hs.403934	NM_001001933	HPRD:17275	LHX8	LHX7	LIM homeobox 8	protein-coding
19-PTNLD28-TUMOR_peak_63602	chr21	41257224	41257552	+	11.40978	NA	intron (NM_006198, intron 1 of 2)	intron (NM_006198, intron 1 of 2)	18041	NM_006198	5121	Hs.80296	NM_006198	HPRD:03378	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
19-PTNLD28-TUMOR_peak_97083	chr8	9081111	9081223	+	11.40978	NA	Intergenic	Intergenic	34658	NR_125431	101929128		NR_125431		LOC101929128	-	uncharacterized LOC101929128	ncRNA
19-PTNLD28-TUMOR_peak_69701	chr3	110971707	110971832	+	11.40978	NA	Intergenic	Intergenic	180754	NM_001243288	25945	Hs.293917	NM_015480		PVRL3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRR3	poliovirus receptor-related 3	protein-coding
19-PTNLD28-TUMOR_peak_7469	chr1	158169769	158169883	+	11.40978	NA	Intergenic	Intergenic	20089	NM_001766	912	Hs.1799	NM_001766	HPRD:01780	CD1D	CD1A|R3	CD1d molecule	protein-coding
19-PTNLD28-TUMOR_peak_35017	chr15	85839930	85840102	+	11.40978	NA	Intergenic	Intergenic	-83831	NM_007200	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_53668	chr2	80082665	80082810	+	11.40978	NA	intron (NM_001282597, intron 3 of 18)	intron (NM_001282597, intron 3 of 18)	10972	NR_107047	102465877		NR_107047		MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
19-PTNLD28-TUMOR_peak_38642	chr16	71995399	71995571	+	11.40978	NA	intron (NM_181536, intron 16 of 29)	MLT1H1|LTR|ERVL-MaLR	38392	NM_181536	342372	Hs.675286	NM_181536		PKD1L3	-	polycystic kidney disease 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_109798	chrX	150957756	150957869	+	11.40978	NA	Intergenic	Intergenic	54594	NM_005140	1260	Hs.447360	NM_005140	HPRD:08946	CNGA2	CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa	cyclic nucleotide gated channel alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_23487	chr12	26877016	26877265	+	11.40978	NA	intron (NM_002223, intron 4 of 56)	intron (NM_002223, intron 4 of 56)	108991	NM_002223	3709	Hs.512235	NM_002223	HPRD:02536	ITPR2	CFAP48|IP3R2	inositol 1,4,5-trisphosphate receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_15556	chr10	110671614	110671783	+	11.40978	NA	Intergenic	Intergenic	-258717	NR_046928	100873762		NR_046928		RNU6-53P	RNU6-53	RNA, U6 small nuclear 53, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_81172	chr5	93053008	93053142	+	11.40978	NA	intron (NM_032042, intron 10 of 10)	intron (NM_032042, intron 10 of 10)	24234	NM_153216	134187	Hs.678995	NM_153216	HPRD:08695	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_2264	chr1	34591633	34591830	+	11.40978	NA	intron (NM_052896, intron 1 of 69)	LTR16C|LTR|ERVL	39144	NM_001281956	114784	Hs.656915	NM_052896	HPRD:13094	CSMD2	dJ1007G16.1|dJ1007G16.2|dJ947L8.1	CUB and Sushi multiple domains 2	protein-coding
19-PTNLD28-TUMOR_peak_72645	chr3	181976467	181976584	+	11.40978	NA	Intergenic	Intergenic	227625	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	FLJ46066	-	uncharacterized LOC401103	ncRNA
19-PTNLD28-TUMOR_peak_79653	chr5	40871398	40871539	+	11.40978	NA	Intergenic	LTR34|LTR|ERV1	30058	NM_032587	84674	Hs.200242	NM_032587	HPRD:09871	CARD6	CINCIN1	caspase recruitment domain family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_27535	chr13	25892029	25892135	+	11.40978	NA	intron (NM_001008564, intron 5 of 14)	AluJb|SINE|Alu	16416	NM_014089	9818	Hs.507537	NM_014089	HPRD:06355	NUPL1	PRO2463	nucleoporin like 1	protein-coding
19-PTNLD28-TUMOR_peak_3747	chr1	57014386	57014518	+	11.40978	NA	intron (NM_003713, intron 1 of 5)	intron (NM_003713, intron 1 of 5)	30805	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_89140	chr6	112318376	112318564	+	11.40978	NA	Intergenic	Intergenic	-56808	NM_003880	8838	Hs.558428	NM_003880	HPRD:04550	WISP3	CCN6|LIBC|PPAC|PPD	WNT1 inducible signaling pathway protein 3	protein-coding
19-PTNLD28-TUMOR_peak_80095	chr5	58571907	58572071	+	11.40978	NA	promoter-TSS (NM_001197220)	promoter-TSS (NM_001197220)	-44	NM_001197220	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_54611	chr2	103104723	103104955	+	11.40978	NA	intron (NM_001011552, intron 2 of 11)	intron (NM_001011552, intron 2 of 11)	15077	NM_001011552	389015	Hs.447686	NM_001011552	HPRD:15973	SLC9A4	NHE4	solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4	protein-coding
19-PTNLD28-TUMOR_peak_70869	chr3	132095511	132095604	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-40996	NM_015268	23317	Hs.12707	NM_015268	HPRD:10915	DNAJC13	RME8	DnaJ (Hsp40) homolog, subfamily C, member 13	protein-coding
19-PTNLD28-TUMOR_peak_56341	chr2	152893504	152893626	+	11.40978	NA	intron (NM_001005746, intron 2 of 13)	intron (NM_001005746, intron 2 of 13)	61670	NM_001005746	785	Hs.120725	NM_000726	HPRD:09057	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
19-PTNLD28-TUMOR_peak_57350	chr2	184918167	184918377	+	11.40978	NA	Intergenic	MER101B|LTR|ERV1	-544821	NM_194250	91752	Hs.159528	NM_194250	HPRD:12804	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
19-PTNLD28-TUMOR_peak_88429	chr6	78078684	78078954	+	11.40978	NA	Intergenic	LTR1|LTR|ERV1	94301	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_48304	chr19	24173932	24174261	+	11.40978	NA	Intergenic	LTR18B|LTR|ERVL	-42111	NM_001278661	9534	Hs.434406	NM_004876	HPRD:05304	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
19-PTNLD28-TUMOR_peak_76726	chr4	117459044	117459260	+	11.40978	NA	Intergenic	Intergenic	238271	NR_031737	100302290		NR_031737		MIR1973	hsa-mir-1973	microRNA 1973	ncRNA
19-PTNLD28-TUMOR_peak_109553	chrX	134220631	134220748	+	11.40978	NA	Intergenic	Intergenic	12044	NR_024493	644596	Hs.656427	NR_024493	ENSG00000196972	LINC00087	NCRNA00087	long intergenic non-protein coding RNA 87	ncRNA
19-PTNLD28-TUMOR_peak_25778	chr12	99367331	99367504	+	11.40978	NA	intron (NM_181670, intron 3 of 12)	MER44B|DNA|TcMar-Tigger	-78743	NM_001204080	56899	Hs.506458	NM_020140	HPRD:07426	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_15991	chr10	122872956	122873157	+	11.40978	NA	Intergenic	Intergenic	-262365	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14358	chr10	75700446	75700588	+	11.40978	NA	Intergenic	Intergenic	-17982	NM_001001791	414236	Hs.585453	NM_001001791	HPRD:16580	C10orf55	bA417O11.3	chromosome 10 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_91835	chr7	30292857	30293206	+	11.40978	NA	Intergenic	Intergenic	-30892	NM_147128	223082	Hs.263912	NM_147128	HPRD:15894	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_34662	chr15	77935274	77935405	+	11.40978	NA	intron (NR_045123, intron 1 of 2)	intron (NR_045123, intron 1 of 2)	1233	NR_045123	253044	Hs.667685	NM_001242772	ENSG00000259666	LOC253044	-	uncharacterized LOC253044	ncRNA
19-PTNLD28-TUMOR_peak_36675	chr16	20161119	20161293	+	11.40978	NA	Intergenic	L2a|LINE|L2	-76106	NM_001002911	124274	Hs.446875	NM_001002911		GPR139	GPRg1|PGR3	G protein-coupled receptor 139	protein-coding
19-PTNLD28-TUMOR_peak_65375	chr22	37318272	37318543	+	11.40978	NA	intron (NM_000395, intron 2 of 13)	intron (NM_000395, intron 2 of 13)	8732	NM_000395	1439	Hs.592192	NM_000395	HPRD:00739	CSF2RB	CD131|CDw131|IL3RB|IL5RB|SMDP5	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_102647	chr9	32591028	32591164	+	11.40978	NA	Intergenic	L1MEc|LINE|L1	-17914	NM_182739	4712	Hs.493668	NM_002493	HPRD:04504	NDUFB6	B17|CI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa	protein-coding
19-PTNLD28-TUMOR_peak_90543	chr6	167906154	167906417	+	11.40978	NA	Intergenic	Intergenic	-108287	NM_004610	6953	Hs.351	NM_004610		TCP10	TCP10A	t-complex 10	protein-coding
19-PTNLD28-TUMOR_peak_26076	chr12	107546257	107546515	+	11.40978	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-58751	NM_004075	1407	Hs.151573	NM_004075	HPRD:09050	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_5872	chr1	117733068	117733180	+	11.40978	NA	intron (NM_001253850, intron 1 of 4)	L1M3a|LINE|L1	13334	NM_001253849	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_71651	chr3	149489565	149489692	+	11.40978	NA	intron (NM_001144960, intron 3 of 5)	L2a|LINE|L2	-19342	NM_016094	51122	Hs.432729	NM_016094	HPRD:13081	COMMD2	-	COMM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_27929	chr13	40795573	40795746	+	11.40978	NA	Intergenic	Intergenic	-1020	NR_033877	400123	Hs.577960	NR_033877		LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
19-PTNLD28-TUMOR_peak_29631	chr14	25204304	25204428	+	11.40978	NA	Intergenic	Intergenic	-100934	NM_004131	3002	Hs.1051	NM_004131	HPRD:00476	GZMB	CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)	protein-coding
19-PTNLD28-TUMOR_peak_11199	chr1	237841507	237841642	+	11.40978	NA	intron (NM_001035, intron 61 of 104)	intron (NM_001035, intron 61 of 104)	-183901	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12994	chr10	38327248	38327569	+	11.40978	NA	intron (NM_001278179, intron 5 of 5)	L1MC3|LINE|L1	27830	NM_001278175	7581	Hs.435774	NM_006954	HPRD:11710	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
19-PTNLD28-TUMOR_peak_27086	chr12	126870440	126870572	+	11.40978	NA	Intergenic	Intergenic	-56521	NR_015398	100128554	Hs.408255	NR_015398	ENSG00000214043	LOC100128554	-	uncharacterized LOC100128554	ncRNA
19-PTNLD28-TUMOR_peak_31598	chr14	89297710	89297871	+	11.40978	NA	intron (NM_001288783, intron 2 of 14)	MER66C|LTR|ERV1	7293	NM_001288782	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
19-PTNLD28-TUMOR_peak_56283	chr2	151039206	151039374	+	11.40978	NA	Intergenic	Intergenic	304919	NM_005168	390	Hs.6838	NM_005168	HPRD:04233	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
19-PTNLD28-TUMOR_peak_13337	chr10	46591480	46591607	+	11.40978	NA	intron (NM_001042359, intron 4 of 7).2	Tigger7|DNA|TcMar-Tigger	28515	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_79844	chr5	52437361	52437515	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	31766	NR_104654	257396	Hs.12326	NR_034107	ENSG00000247796	LOC257396	-	uncharacterized LOC257396	ncRNA
19-PTNLD28-TUMOR_peak_67462	chr3	33829034	33829129	+	11.40978	NA	Intergenic	Intergenic	-10982	NM_013374	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_3526	chr1	53280221	53280427	+	11.40978	NA	intron (NM_024646, intron 12 of 13)	FRAM|SINE|Alu	-27859	NM_001004339	440590	Hs.658458	NM_001004339	HPRD:17399	ZYG11A	ZYG11	zyg-11 family member A, cell cycle regulator	protein-coding
19-PTNLD28-TUMOR_peak_104506	chr9	92770189	92770311	+	11.40978	NA	Intergenic	Intergenic	15567	NR_036253	100422963		NR_036253	miRBase:MI0015899	MIR4290	-	microRNA 4290	ncRNA
19-PTNLD28-TUMOR_peak_55147	chr2	114668096	114668216	+	11.40978	NA	intron (NM_001277140, intron 1 of 11)	MER21B|LTR|ERVL	-19587	NR_110174	101060091	Hs.741753	NR_110174		LOC101060091	-	uncharacterized LOC101060091	ncRNA
19-PTNLD28-TUMOR_peak_45429	chr18	42456011	42456245	+	11.40978	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	94003	NR_036203	100422829		NR_036203	miRBase:MI0015848	MIR4319	-	microRNA 4319	ncRNA
19-PTNLD28-TUMOR_peak_104034	chr9	81292348	81292512	+	11.40978	NA	Intergenic	Intergenic	380439	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_98091	chr8	32412334	32412440	+	11.40978	NA	intron (NM_013964, intron 1 of 11)	intron (NM_013964, intron 1 of 11)	6659	NM_004495	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_101910	chr9	686425	686540	+	11.40978	NA	intron (NM_001256877, intron 3 of 12)	intron (NM_001256877, intron 3 of 12)	-20324	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_73307	chr3	193490339	193490451	+	11.40978	NA	Intergenic	Intergenic	-145274	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97102	chr8	9966374	9966526	+	11.40978	NA	intron (NM_001199729, intron 2 of 6)	intron (NM_001199729, intron 2 of 6)	13388	NM_001135671	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_33047	chr15	35719478	35719590	+	11.40978	NA	intron (NM_080650, intron 5 of 8)	CR1_Mam|LINE|CR1	-54969	NR_037507	100500904		NR_037507		MIR3942	-	microRNA 3942	ncRNA
19-PTNLD28-TUMOR_peak_75623	chr4	72155865	72156114	+	11.40978	NA	intron (NM_001098484, intron 3 of 25)	L2|LINE|L2	-48781	NM_003759	8671	Hs.5462	NM_003759	HPRD:04516	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|pNBC	solute carrier family 4 (sodium bicarbonate cotransporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_99298	chr8	81143096	81143250	+	11.40978	NA	Intergenic	Intergenic	-10451	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_15014	chr10	97134511	97134608	+	11.40978	NA	intron (NM_001034954, intron 17 of 30)	MamRep1161|DNA|TcMar	66378	NM_001034955	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81525	chr5	111030041	111030184	+	11.40978	NA	intron (NR_040093, intron 2 of 6)	intron (NR_040093, intron 2 of 6)	61836	NM_001142483	9315	Hs.36053	NM_004772	HPRD:09545	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
19-PTNLD28-TUMOR_peak_21885	chr11	125133527	125133736	+	11.40978	NA	intron (NM_022062, intron 2 of 12)	intron (NM_022062, intron 2 of 12)	99072	NM_022062	63876	Hs.278564	NM_022062	HPRD:17857	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_4291	chr1	69205574	69205786	+	11.40978	NA	Intergenic	L1HS|LINE|L1	-242776	NM_001114120	55635	Hs.445098	NM_017779	HPRD:10879	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89640	chr6	138071087	138071308	+	11.40978	NA	Intergenic	Intergenic	-11023	NR_121619	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_77968	chr4	169329886	169330031	+	11.40978	NA	intron (NM_001291510, intron 22 of 29)	intron (NM_001291510, intron 22 of 29)	71707	NM_001291510	91351	Hs.535011	NM_001012967	ENSG00000181381	DDX60L	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	protein-coding
19-PTNLD28-TUMOR_peak_75981	chr4	82858496	82858611	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	436596	NM_031369	3184	Hs.480073	NM_002138		HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	protein-coding
19-PTNLD28-TUMOR_peak_5297	chr1	108552523	108552681	+	11.40978	NA	Intergenic	Intergenic	-45057	NM_006113	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_57136	chr2	177319743	177319927	+	11.40978	NA	Intergenic	Intergenic	145945	NR_031648	100302142		NR_031648		MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
19-PTNLD28-TUMOR_peak_21399	chr11	116851433	116851549	+	11.40978	NA	intron (NM_025164, intron 1 of 23)	AluSz|SINE|Alu	117640	NM_025164	23387	Hs.167451	NM_025164	HPRD:11121	SIK3	QSK|SIK-3	SIK family kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_56862	chr2	169929753	169929988	+	11.40978	NA	intron (NM_001142270, intron 1 of 5)	MIRb|SINE|MIR	785	NM_001142270	10170	Hs.179608	NM_005771	HPRD:09916	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4	dehydrogenase/reductase (SDR family) member 9	protein-coding
19-PTNLD28-TUMOR_peak_99147	chr8	71042926	71043068	+	11.40978	NA	intron (NM_006540, intron 16 of 22)	intron (NM_006540, intron 16 of 22)	-59435	NM_024504	63978	Hs.736037	NM_024504	HPRD:11457	PRDM14	PFM11	PR domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_21942	chr11	126180545	126180700	+	11.40978	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	6975	NM_014026	28960	Hs.504249	NM_014026	HPRD:16787	DCPS	DCS1|HINT-5|HINT5|HSL1	decapping enzyme, scavenger	protein-coding
19-PTNLD28-TUMOR_peak_93770	chr7	86041260	86041403	+	11.40978	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-231899	NM_000840	2913	Hs.590575	NM_000840	HPRD:03070	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate receptor, metabotropic 3	protein-coding
19-PTNLD28-TUMOR_peak_94949	chr7	117721102	117721306	+	11.40978	NA	Intergenic	L2c|LINE|L2	-102882	NM_016200	51691	Hs.655046	NM_016200		LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_96151	chr7	148317889	148318081	+	11.40978	NA	Intergenic	Intergenic	30328	NM_145304	202865	Hs.352212	NM_145304	HPRD:12921	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_20539	chr11	90372606	90372759	+	11.40978	NA	intron (NR_104190, intron 3 of 6)	intron (NR_104190, intron 3 of 6)	-83657	NR_039711	100616186		NR_039711	miRBase:MI0016852	MIR4490	-	microRNA 4490	ncRNA
19-PTNLD28-TUMOR_peak_46118	chr18	61185814	61185959	+	11.40978	NA	Intergenic	Intergenic	-37507	NM_080474	89777	Hs.348541	NM_080474	HPRD:11548	SERPINB12	YUKOPIN	serpin peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding
19-PTNLD28-TUMOR_peak_77811	chr4	158660533	158660677	+	11.40978	NA	Intergenic	AluJb|SINE|Alu	166963	NR_026992	340017	Hs.428275	NR_026992	ENSG00000234111	LOC340017	-	uncharacterized LOC340017	ncRNA
19-PTNLD28-TUMOR_peak_50940	chr2	8833260	8833791	+	11.40978	NA	Intergenic	Intergenic	11412	NM_002166	3398	Hs.180919	NM_002166	HPRD:02664	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_105408	chr9	113739572	113739711	+	11.40978	NA	intron (NM_057159, intron 1 of 4)	intron (NM_057159, intron 1 of 4)	60724	NM_001401	1902	Hs.126667	NM_001401	HPRD:03790	LPAR1	EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1	lysophosphatidic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_28942	chr13	106232807	106233031	+	11.40978	NA	Intergenic	Intergenic	-74889	NR_040247	282706	Hs.558713	NR_040247	HPRD:07597	DAOA-AS1	DAOA-AS|DAOAAS|G30	DAOA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25777	chr12	99222700	99222872	+	11.40978	NA	intron (NM_001204066, intron 4 of 11)	intron (NM_001204066, intron 4 of 11)	65888	NM_001204079	56899	Hs.506458	NM_020140	HPRD:07426	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_58609	chr2	224428285	224428413	+	11.40978	NA	Intergenic	Intergenic	38868	NM_003469	7857	Hs.516726	NM_003469	HPRD:06762	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
19-PTNLD28-TUMOR_peak_52080	chr2	35337470	35337578	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	1245189	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_81012	chr5	82746446	82746604	+	11.40978	NA	Intergenic	MLT2B3|LTR|ERVL	-20968	NM_004385	1462	Hs.643801	NM_004385	HPRD:00340	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
19-PTNLD28-TUMOR_peak_81133	chr5	90641426	90641555	+	11.40978	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-31271	NR_103549	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_32218	chr14	103893871	103894198	+	11.40978	NA	intron (NM_001128921, intron 2 of 15)	MER41B|LTR|ERV1	42333	NM_001128920	4140	Hs.35828	NM_002376	HPRD:04058	MARK3	CTAK1|KP78|PAR1A|Par-1a	MAP/microtubule affinity-regulating kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_68443	chr3	54460548	54460664	+	11.40978	NA	intron (NM_018398, intron 4 of 37)	intron (NM_018398, intron 4 of 37)	213278	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_80131	chr5	59700005	59700331	+	11.40978	NA	intron (NM_001165899, intron 1 of 16)	intron (NM_001165899, intron 1 of 16)	-83372	NR_024617	25859	Hs.146312	NM_001039499	HPRD:09230	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_93615	chr7	79282064	79282228	+	11.40978	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-118426	NR_031667	100313772		NR_031667	miRBase:MI0006400	MIR548M	MIRN548M	microRNA 548m	ncRNA
19-PTNLD28-TUMOR_peak_64943	chr22	28577547	28577654	+	11.40978	NA	intron (NM_001145418, intron 5 of 22)	intron (NM_001145418, intron 5 of 22)	-261000	NR_036169	100423034		NR_036169	miRBase:MI0014247	MIR3199-1	-	microRNA 3199-1	ncRNA
19-PTNLD28-TUMOR_peak_81406	chr5	103601563	103601807	+	11.40978	NA	Intergenic	Intergenic	-703183	NM_031438	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_17652	chr11	22498903	22499136	+	11.40978	NA	intron (NR_120583, intron 2 of 3)	intron (NR_120583, intron 2 of 3)	14546	NR_120583	102723378	Hs.374255	NR_120583		LINC01495	-	long intergenic non-protein coding RNA 1495	ncRNA
19-PTNLD28-TUMOR_peak_95023	chr7	124893968	124894127	+	11.40978	NA	intron (NR_110182, intron 1 of 4)	intron (NR_110182, intron 1 of 4)	10298	NR_110182	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
19-PTNLD28-TUMOR_peak_23874	chr12	43865222	43865327	+	11.40978	NA	intron (NM_025003, intron 7 of 38)	L1PA2|LINE|L1	80450	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_75086	chr4	41614596	41614827	+	11.40978	NA	promoter-TSS (NM_001112719)	promoter-TSS (NM_001112719)	-78	NM_001112719	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_88485	chr6	80838261	80838398	+	11.40978	NA	intron (NM_183050, intron 2 of 9)	intron (NM_183050, intron 2 of 9)	21985	NM_183050	594	Hs.654441	NM_000056	HPRD:02011	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_28005	chr13	42600910	42601096	+	11.40978	NA	Intergenic	Intergenic	-13169	NM_001204504	160851	Hs.630380	NM_152910	HPRD:07237	DGKH	DGKeta	diacylglycerol kinase, eta	protein-coding
19-PTNLD28-TUMOR_peak_79399	chr5	33458057	33458221	+	11.40978	NA	intron (NM_001258438, intron 10 of 19)	intron (NM_001258438, intron 10 of 19)	17257	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_100477	chr8	123745917	123746080	+	11.40978	NA	Intergenic	Intergenic	-47903	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_93761	chr7	85310695	85310829	+	11.40978	NA	Intergenic	Intergenic	-559515	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_22602	chr12	4530800	4530901	+	11.40978	NA	Intergenic	Intergenic	23930	NM_020996	2251	Hs.166015	NM_020996	HPRD:00623	FGF6	HBGF-6|HST2	fibroblast growth factor 6	protein-coding
19-PTNLD28-TUMOR_peak_53340	chr2	70345971	70346113	+	11.40978	NA	Intergenic	Intergenic	6406	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LOC100133985	-	uncharacterized LOC100133985	ncRNA
19-PTNLD28-TUMOR_peak_27983	chr13	42008283	42008495	+	11.40978	NA	Intergenic	Intergenic	-8311	NR_002163	100506759	Hs.507861	NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor, family 7, subfamily E, member 37 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_75479	chr4	58505875	58506036	+	11.40978	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-529404	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_33905	chr15	63295799	63296003	+	11.40978	NA	Intergenic	Intergenic	-38937	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_58546	chr2	221370004	221370126	+	11.40978	NA	Intergenic	Intergenic	-598779	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_65943	chr22	46152981	46153293	+	11.40978	NA	intron (NM_013236, intron 9 of 11)	intron (NM_013236, intron 9 of 11)	-3267	NR_039919	100616253		NR_039919		MIR4762	-	microRNA 4762	ncRNA
19-PTNLD28-TUMOR_peak_85529	chr6	13909280	13909527	+	11.40978	NA	Intergenic	Intergenic	-15274	NM_001165034	221687	Hs.111164	NM_152737	HPRD:15264	RNF182	-	ring finger protein 182	protein-coding
19-PTNLD28-TUMOR_peak_67675	chr3	40905972	40906194	+	11.40978	NA	Intergenic	Intergenic	-334859	NM_001904	1499	Hs.476018	NM_001904	HPRD:00286	CTNNB1	CTNNB|MRD19|armadillo	catenin (cadherin-associated protein), beta 1, 88kDa	protein-coding
19-PTNLD28-TUMOR_peak_74544	chr4	12575460	12575595	+	11.40978	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	910462	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_14685	chr10	86466750	86466892	+	11.40978	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	281883	NM_001284242	54462	Hs.461988	NM_018999	HPRD:13832	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
19-PTNLD28-TUMOR_peak_44635	chr18	12227964	12228113	+	11.40978	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-26280	NM_001279	1149	Hs.249129	NM_001279		CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
19-PTNLD28-TUMOR_peak_15883	chr10	119555757	119556179	+	11.40978	NA	Intergenic	Intergenic	250146	NM_014904	22841	Hs.173656	NM_014904	HPRD:10548	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2 (class I)	protein-coding
19-PTNLD28-TUMOR_peak_15204	chr10	101535806	101535947	+	11.40978	NA	Intergenic	Intergenic	-6479	NM_000392	1244	Hs.368243	NM_000392	HPRD:03065	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding
19-PTNLD28-TUMOR_peak_98969	chr8	61926785	61926967	+	11.40978	NA	Intergenic	Intergenic	-46569	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_16266	chr10	131118732	131118949	+	11.40978	NA	Intergenic	L1ME1|LINE|L1	-146614	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_63034	chr21	29625813	29625969	+	11.40978	NA	Intergenic	Intergenic	240209	NR_027246	246705	Hs.505079	NM_145180	HPRD:10778	LINC00314	C21orf94|NCRNA00314	long intergenic non-protein coding RNA 314	ncRNA
19-PTNLD28-TUMOR_peak_8296	chr1	174207828	174207923	+	11.40978	NA	intron (NM_014857, intron 4 of 20)	L1PA2|LINE|L1	79323	NM_014857	9910	Hs.585378	NM_014857	HPRD:16464	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_47085	chr19	8773879	8774060	+	11.40978	NA	Intergenic	Intergenic	35211	NM_178525	284382	Hs.209206	NM_178525	HPRD:14562	ACTL9	-	actin-like 9	protein-coding
19-PTNLD28-TUMOR_peak_52323	chr2	42087256	42087352	+	11.40978	NA	Intergenic	AluSz|SINE|Alu	-17391	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LOC388942	-	uncharacterized LOC388942	ncRNA
19-PTNLD28-TUMOR_peak_81421	chr5	105490454	105490576	+	11.40978	NA	Intergenic	LTR12C|LTR|ERV1	856200	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_4806	chr1	90452907	90453009	+	11.40978	NA	Intergenic	Intergenic	7567	NR_002830	492303	Hs.550796	NR_002830		GEMIN8P4	-	gem (nuclear organelle) associated protein 8 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_3951	chr1	61938495	61938833	+	11.40978	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-181250	NR_073400	414927	Hs.123471	NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_106321	chr9	131750200	131750386	+	11.40978	NA	intron (NM_015354, intron 23 of 43)	intron (NM_015354, intron 23 of 43)	-40281	NM_014908	22845	Hs.531563	NM_014908	HPRD:15525	DOLK	CDG1M|DK|DK1|SEC59|TMEM15	dolichol kinase	protein-coding
19-PTNLD28-TUMOR_peak_18093	chr11	36236145	36236305	+	11.40978	NA	intron (NM_174902, intron 4 of 5)	MIRb|SINE|MIR	74774	NM_001101653	29099	Hs.279836	NM_014186		COMMD9	-	COMM domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_32415	chr14	106995643	106995972	+	11.40978	NA	Intergenic	LTR13_|LTR|ERVK	57362	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_57506	chr2	192036918	192037044	+	11.40978	NA	Intergenic	Intergenic	-20659	NM_001243835	6775	Hs.80642	NM_003151	HPRD:02779	STAT4	SLEB11	signal transducer and activator of transcription 4	protein-coding
19-PTNLD28-TUMOR_peak_43237	chr17	70680245	70680382	+	11.40978	NA	intron (NM_139177, intron 7 of 9)	intron (NM_139177, intron 7 of 9)	-43702	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	ncRNA
19-PTNLD28-TUMOR_peak_12364	chr10	22802855	22802979	+	11.40978	NA	Intergenic	L1PA7|LINE|L1	-76059	NR_036533	100499489	Hs.7444	NR_036533		LOC100499489	-	uncharacterized LOC100499489	ncRNA
19-PTNLD28-TUMOR_peak_21705	chr11	121593225	121593475	+	11.40978	NA	Intergenic	Intergenic	270438	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_73153	chr3	189693504	189693688	+	11.40978	NA	intron (NM_001134418, intron 8 of 14)	intron (NM_001134418, intron 8 of 14)	145312	NM_018192	55214	Hs.374191	NM_018192	HPRD:17270	LEPREL1	MCVD|MLAT4|P3H2	leprecan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_28351	chr13	53824608	53824715	+	11.40978	NA	Intergenic	Intergenic	-98626	NR_125788	102723875	Hs.149083	NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
19-PTNLD28-TUMOR_peak_88208	chr6	69285933	69286308	+	11.40978	NA	Intergenic	Intergenic	-59512	NM_001704	577	Hs.13261	NM_001704	HPRD:04064	BAI3	-	brain-specific angiogenesis inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_58585	chr2	223555428	223555530	+	11.40978	NA	intron (NM_058165, intron 3 of 5)	intron (NM_058165, intron 3 of 5)	19022	NM_058165	116255	Hs.344090	NM_058165	HPRD:14729	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_35551	chr15	102166752	102166899	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	25769	NM_078474	80213	Hs.288912	NM_025141	HPRD:16554	TM2D3	BLP2	TM2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_13734	chr10	60400880	60401170	+	11.40978	NA	intron (NM_001080512, intron 2 of 20)	intron (NM_001080512, intron 2 of 20)	-73750	NR_027508	728640	Hs.729209	NR_027508		FAM133CP	-	family with sequence similarity 133, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_59892	chr20	14415205	14415317	+	11.40978	NA	intron (NM_080676, intron 3 of 16)	L2|LINE|L2	-96948	NM_013281	23767	Hs.41296	NM_013281	HPRD:05313	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_94832	chr7	108886852	108886996	+	11.40978	NA	Intergenic	LTR3B|LTR|ERVK	-362287	NM_001024607	154907	Hs.276325	NM_001024607	HPRD:18563	C7orf66	-	chromosome 7 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_37827	chr16	53056450	53056577	+	11.40978	NA	Intergenic	Intergenic	-32432	NM_025134	80205	Hs.59159	NM_025134	HPRD:08570	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_94889	chr7	114813283	114813387	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	94323	NR_120521	102724386	Hs.352357	NR_120521		LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
19-PTNLD28-TUMOR_peak_2917	chr1	42810075	42810182	+	11.40978	NA	Intergenic	Intergenic	-8580	NM_001198850	22887	Hs.26023	NM_014947	HPRD:13549	FOXJ3	-	forkhead box J3	protein-coding
19-PTNLD28-TUMOR_peak_108661	chrX	70058851	70058950	+	11.40978	NA	intron (NM_001003811, intron 8 of 30)	L1PA4|LINE|L1	69667	NM_031276	56159	Hs.121776	NM_031276	HPRD:02256	TEX11	TGC1|TSGA3	testis expressed 11	protein-coding
19-PTNLD28-TUMOR_peak_107576	chrX	13129007	13129371	+	11.40978	NA	Intergenic	Intergenic	-66272	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_23963	chr12	46901677	46901830	+	11.40978	NA	intron (NR_125380, intron 3 of 3)	intron (NR_125380, intron 3 of 3)	123863	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_104292	chr9	88963513	88963650	+	11.40978	NA	intron (NM_024617, intron 2 of 26)	AluJo|SINE|Alu	5821	NM_024617	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_66273	chr3	4995026	4995237	+	11.40978	NA	Intergenic	Intergenic	-25966	NM_003670	8553	Hs.744856	NM_003670	HPRD:16050	BHLHE40	BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14	basic helix-loop-helix family, member e40	protein-coding
19-PTNLD28-TUMOR_peak_53124	chr2	65267868	65267994	+	11.40978	NA	Intergenic	Intergenic	-15564	NM_015147	23177	Hs.709257	NM_015147	HPRD:13808	CEP68	KIAA0582	centrosomal protein 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_9947	chr1	211878858	211879161	+	11.40978	NA	Intergenic	Intergenic	-30037	NM_001204182	4751	Hs.153704	NM_002497	HPRD:04953	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA-related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_59959	chr20	16928339	16928498	+	11.40978	NA	Intergenic	Intergenic	199420	NM_020157	56914	Hs.41119	NM_020157	HPRD:07300	OTOR	FDP|MIAL1	otoraplin	protein-coding
19-PTNLD28-TUMOR_peak_77350	chr4	142652637	142652841	+	11.40978	NA	intron (NM_000585, intron 7 of 7)	intron (NM_000585, intron 7 of 7)	94990	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_69540	chr3	105676674	105676858	+	11.40978	NA	Intergenic	L2|LINE|L2	-88879	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_104566	chr9	94334364	94334537	+	11.40978	NA	Intergenic	Intergenic	-64083	NR_037472	100500821		NR_037472	miRBase:MI0016414	MIR3910-1	-	microRNA 3910-1	ncRNA
19-PTNLD28-TUMOR_peak_91954	chr7	33871480	33871653	+	11.40978	NA	Intergenic	Intergenic	-72957	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_89901	chr6	148932473	148932686	+	11.40978	NA	Intergenic	Intergenic	-135692	NM_005715	10090	Hs.657370	NM_005715	HPRD:10298	UST	2OST	uronyl-2-sulfotransferase	protein-coding
19-PTNLD28-TUMOR_peak_14448	chr10	78939092	78939383	+	11.40978	NA	intron (NM_001271519, intron 5 of 28)	intron (NM_001271519, intron 5 of 28)	38648	NR_120654	101929310	Hs.666457	NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_77084	chr4	132531782	132531931	+	11.40978	NA	Intergenic	L1ME1|LINE|L1	-1538614	NM_032961	57575	Hs.192859	NM_020815		PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
19-PTNLD28-TUMOR_peak_76087	chr4	85594686	85594885	+	11.40978	NA	intron (NM_014991, intron 67 of 67)	intron (NM_014991, intron 67 of 67)	90728	NM_001263	1040	Hs.654899	NM_001263	HPRD:11944	CDS1	CDS	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1	protein-coding
19-PTNLD28-TUMOR_peak_81035	chr5	85389373	85389519	+	11.40978	NA	Intergenic	Intergenic	-188816	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	neuroblastoma breakpoint family, member 22, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_33482	chr15	48086614	48086965	+	11.40978	NA	Intergenic	Intergenic	51644	NR_120336	101928442	Hs.242804	NR_120336		LINC01491	-	long intergenic non-protein coding RNA 1491	ncRNA
19-PTNLD28-TUMOR_peak_79801	chr5	50007156	50007361	+	11.40978	NA	intron (NM_024615, intron 2 of 25)	MLT1L|LTR|ERVL-MaLR	44486	NM_001178056	79668	Hs.369581	NM_024615	HPRD:07960	PARP8	ARTD16|pART16	poly (ADP-ribose) polymerase family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_50289	chr19	54834284	54834403	+	11.40978	NA	Intergenic	LTR13|LTR|ERVK	-9934	NM_181986	353514	Hs.710986	NM_021250	HPRD:06924	LILRA5	CD85|CD85F|ILT-11|ILT11|LILRB7|LIR-9|LIR9	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding
19-PTNLD28-TUMOR_peak_108461	chrX	56613519	56613657	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	23562	NM_013444	29978	Hs.179309	NM_013444	HPRD:02224	UBQLN2	ALS15|CHAP1|DSK2|N4BP4|PLIC2	ubiquilin 2	protein-coding
19-PTNLD28-TUMOR_peak_17679	chr11	25233302	25233668	+	11.40978	NA	Intergenic	L1PBa|LINE|L1	714969	NM_001252008	338645	Hs.144138	NM_001009909	HPRD:17348	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding
19-PTNLD28-TUMOR_peak_66061	chr22	49387064	49387171	+	11.40978	NA	Intergenic	L1HS|LINE|L1	124535	NR_038944	100128946	Hs.535676	NR_038944		LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
19-PTNLD28-TUMOR_peak_105134	chr9	108059229	108059400	+	11.40978	NA	intron (NM_080546, intron 1 of 15)	MIR3|SINE|MIR	52420	NM_001286730	23446	Hs.573495	NM_022109	HPRD:16197	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 (choline transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_29369	chr14	21467254	21467394	+	11.40978	NA	promoter-TSS (NM_001256588)	promoter-TSS (NM_001256588)	-2	NR_110139	101929718	Hs.706252	NR_110139	ENSG00000258471	LOC101929718	-	uncharacterized LOC101929718	ncRNA
19-PTNLD28-TUMOR_peak_66200	chr3	3057321	3057440	+	11.40978	NA	intron (NM_001206956, intron 5 of 15)	intron (NM_001206956, intron 5 of 15)	45449	NR_046554	100873975	Hs.581502	NR_046554		CNTN4-AS1	-	CNTN4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4498	chr1	81348299	81348484	+	11.40978	NA	Intergenic	LTR90A|LTR|LTR	-817064	NM_001297704	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_75520	chr4	62421683	62421826	+	11.40978	NA	intron (NM_015236, intron 1 of 22)	MER41A|LTR|ERV1	58915	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_94017	chr7	94905533	94905638	+	11.40978	NA	intron (NM_001166161, intron 14 of 17)	intron (NM_001166161, intron 14 of 17)	48299	NM_000446	5444	Hs.370995	NM_000446		PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
19-PTNLD28-TUMOR_peak_23188	chr12	13726753	13726880	+	11.40978	NA	intron (NM_000834, intron 9 of 12)	intron (NM_000834, intron 9 of 12)	-197137	NR_036555	283422	Hs.448717	NM_182558	HPRD:08166	C12orf36	-	chromosome 12 open reading frame 36	ncRNA
19-PTNLD28-TUMOR_peak_83071	chr5	148336327	148336519	+	11.40978	NA	Intergenic	MER5A|DNA|hAT-Charlie	106314	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_13832	chr10	63403202	63403371	+	11.40978	NA	Intergenic	Intergenic	-19433	NM_173554	219621	Hs.673160	NM_173554	HPRD:12559	C10orf107	bA63A2.1	chromosome 10 open reading frame 107	protein-coding
19-PTNLD28-TUMOR_peak_52129	chr2	37012394	37012522	+	11.40978	NA	intron (NM_001177971, intron 9 of 13)	MER5A1|DNA|hAT-Charlie	88625	NM_001177969	5212	Hs.137415	NM_053276	HPRD:18284	VIT	-	vitrin	protein-coding
19-PTNLD28-TUMOR_peak_28341	chr13	53467243	53467427	+	11.40978	NA	Intergenic	Intergenic	-44560	NM_002590	5100	Hs.19492	NM_002590	HPRD:04660	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
19-PTNLD28-TUMOR_peak_26456	chr12	116598197	116598322	+	11.40978	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	-11800	NR_030351	693205		NR_030351		MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
19-PTNLD28-TUMOR_peak_103322	chr9	45480858	45480993	+	11.40978	NA	Intergenic	Intergenic	-475635	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_100274	chr8	119086573	119086752	+	11.40978	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	37396	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_91328	chr7	13846345	13846556	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	179689	NM_001163150	2115	Hs.22634	NM_004956	HPRD:02765	ETV1	ER81	ets variant 1	protein-coding
19-PTNLD28-TUMOR_peak_108746	chrX	72601243	72601373	+	11.40978	NA	Intergenic	L1HS|LINE|L1	-65782	NM_005193	1046	Hs.553488	NM_005193		CDX4	-	caudal type homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_69408	chr3	99385160	99385313	+	11.40978	NA	intron (NM_020351, intron 1 of 3)	intron (NM_020351, intron 1 of 3)	27796	NM_001850	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_45886	chr18	55114460	55114689	+	11.40978	NA	intron (NM_004852, intron 1 of 1)	intron (NM_004852, intron 1 of 1)	11657	NM_004852	9480	Hs.194725	NM_004852	HPRD:05354	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_74977	chr4	38704183	38704312	+	11.40978	NA	Intergenic	AluSx|SINE|Alu	-37998	NR_026804	79667	Hs.29725	NM_024614	HPRD:07818	KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33624	chr15	53976811	53976950	+	11.40978	NA	intron (NR_102334, intron 13 of 19)	L1PA3|LINE|L1	74979	NM_182758	256764	Hs.122125	NM_182758	HPRD:10987	WDR72	AI2A3	WD repeat domain 72	protein-coding
19-PTNLD28-TUMOR_peak_100359	chr8	120491573	120491719	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	63094	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_27461	chr13	24144431	24144643	+	11.40978	NA	promoter-TSS (NM_001204459)	promoter-TSS (NM_001204459)	28	NM_001204459	55504	Hs.149168	NM_018647	HPRD:05838	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	tumor necrosis factor receptor superfamily, member 19	protein-coding
19-PTNLD28-TUMOR_peak_102250	chr9	15144610	15144778	+	11.40978	NA	Intergenic	L2|LINE|L2	105504	NM_001168342	158219	Hs.563630	NM_152574	HPRD:10801	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
19-PTNLD28-TUMOR_peak_76393	chr4	101017290	101017392	+	11.40978	NA	Intergenic	Intergenic	94314	NM_145244	115265	Hs.480378	NM_145244	HPRD:09663	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
19-PTNLD28-TUMOR_peak_91426	chr7	18026523	18026744	+	11.40978	NA	Intergenic	Intergenic	40853	NM_175886	221823	Hs.169284	NM_175886	HPRD:17914	PRPS1L1	PRPS1|PRPS3|PRPSL|PRS-III	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_30007	chr14	39673104	39673421	+	11.40978	NA	Intergenic	L1PBa|LINE|L1	28875	NM_002687	5411	Hs.409965	NM_002687	HPRD:04401	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
19-PTNLD28-TUMOR_peak_100086	chr8	110338185	110338307	+	11.40978	NA	intron (NM_032869, intron 1 of 9)	intron (NM_032869, intron 1 of 9)	3916	NM_001128211	84955	Hs.380291	NM_032869	HPRD:16200	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_108652	chrX	69482931	69483070	+	11.40978	NA	Intergenic	Intergenic	-3346	NM_002565	5030	Hs.673854	NM_002565	HPRD:02075	P2RY4	NRU|P2P|P2Y4|UNR	pyrimidinergic receptor P2Y, G-protein coupled, 4	protein-coding
19-PTNLD28-TUMOR_peak_12885	chr10	34446082	34446308	+	11.40978	NA	intron (NM_001184791, intron 18 of 20)	L2c|LINE|L2	-384587	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_74750	chr4	23156743	23156845	+	11.40978	NA	Intergenic	LTR10D|LTR|ERV1	307932	NR_039674	100616252		NR_039674	miRBase:MI0016815	MIR548AJ2	-	microRNA 548aj-2	ncRNA
19-PTNLD28-TUMOR_peak_28218	chr13	49757968	49758171	+	11.40978	NA	intron (NR_103528, intron 14 of 25)	L2a|LINE|L2	-36405	NM_001507	2862	Hs.248126	NM_001507	HPRD:04197	MLNR	GPR38|MTLR1	motilin receptor	protein-coding
19-PTNLD28-TUMOR_peak_64717	chr22	24272436	24272677	+	11.40978	NA	Intergenic	LTR13|LTR|ERVK	30812	NM_001080843	653689	Hs.656498	NM_001080843	ENSG00000133433	GSTT2B	GSTT2P	glutathione S-transferase theta 2B (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_58129	chr2	209993764	209993871	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-294954	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_74911	chr4	34678169	34678285	+	11.40978	NA	Intergenic	LTR33A|LTR|ERVL	-1567511	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
19-PTNLD28-TUMOR_peak_46134	chr18	61630996	61631114	+	11.40978	NA	Intergenic	LTR41|LTR|ERVL	-6208	NM_001031848	5271	Hs.368077	NM_002640	HPRD:03412	SERPINB8	CAP2|PI8	serpin peptidase inhibitor, clade B (ovalbumin), member 8	protein-coding
19-PTNLD28-TUMOR_peak_87816	chr6	46764663	46764908	+	11.40978	NA	intron (NM_005588, intron 3 of 13)	intron (NM_005588, intron 3 of 13)	3691	NM_005588	4224	Hs.179704	NM_005588	HPRD:02666	MEP1A	PPHA	meprin A, alpha (PABA peptide hydrolase)	protein-coding
19-PTNLD28-TUMOR_peak_76419	chr4	103060553	103060733	+	11.40978	NA	Intergenic	Intergenic	184826	NM_001135148	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_100422	chr8	121983270	121983489	+	11.40978	NA	Intergenic	Intergenic	-159070	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_77657	chr4	153877912	153878036	+	11.40978	NA	intron (NM_033393, intron 3 of 10)	intron (NM_033393, intron 3 of 10)	13839	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_62937	chr21	23715328	23715495	+	11.40978	NA	Intergenic	MER41B|LTR|ERV1	244475	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308	long intergenic non-protein coding RNA 308	ncRNA
19-PTNLD28-TUMOR_peak_75356	chr4	55269214	55269463	+	11.40978	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	174074	NM_006206	5156	Hs.74615	NM_006206	HPRD:01429	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	platelet-derived growth factor receptor, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_46707	chr19	3142010	3142188	+	11.40978	NA	non-coding (NR_110670, exon 4 of 4)	non-coding (NR_110670, exon 4 of 4)	6069	NM_002068	2769	Hs.73797	NM_002068	HPRD:00760	GNA15	GNA16	guanine nucleotide binding protein (G protein), alpha 15 (Gq class)	protein-coding
19-PTNLD28-TUMOR_peak_27058	chr12	126104342	126104581	+	11.40978	NA	intron (NM_052907, intron 5 of 8)	intron (NM_052907, intron 5 of 8)	-2537	NM_001286219	114795	Hs.524838	NM_052907		TMEM132B	-	transmembrane protein 132B	protein-coding
19-PTNLD28-TUMOR_peak_91331	chr7	14687760	14687864	+	11.40978	NA	intron (NM_004080, intron 12 of 24)	L1PA2|LINE|L1	193263	NM_145695	1607	Hs.567255	NM_004080	HPRD:06819	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase, beta 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_68451	chr3	54887996	54888127	+	11.40978	NA	intron (NM_018398, intron 17 of 37)	intron (NM_018398, intron 17 of 37)	47221	NR_046666	100874237	Hs.570583	NR_046666	ENSG00000243715	CACNA2D3-AS1	-	CACNA2D3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34817	chr15	81702772	81702974	+	11.40978	NA	intron (NR_120365, intron 6 of 6)	intron (NR_120365, intron 6 of 6)	-36455	NM_001080532	342125	Hs.253489	NM_001080532		TMC3	-	transmembrane channel-like 3	protein-coding
19-PTNLD28-TUMOR_peak_40189	chr17	10039374	10039597	+	11.40978	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	62383	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_57304	chr2	182812154	182812283	+	11.40978	NA	Intergenic	Intergenic	-6750	NR_048567	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding
19-PTNLD28-TUMOR_peak_56232	chr2	149884535	149884643	+	11.40978	NA	Intergenic	Intergenic	-10392	NM_177964	130576	Hs.357567	NM_177964	HPRD:14045	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_31918	chr14	97059048	97059184	+	11.40978	NA	Intergenic	CpG	89914	NM_001293628	10914	Hs.253726	NM_032632	HPRD:10407	PAPOLA	PAP	poly(A) polymerase alpha	protein-coding
19-PTNLD28-TUMOR_peak_18750	chr11	58984494	58984626	+	11.40978	NA	Intergenic	Intergenic	-4066	NM_001039396	219972	Hs.744920	NM_001039396	ENSG00000197629	MPEG1	MPG1|MPS1|Mpg-1	macrophage expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_41107	chr17	34257733	34257908	+	11.40978	NA	promoter-TSS (NM_145654)	promoter-TSS (NM_145654)	-40	NM_001034836	201299	Hs.194411	NM_145654	HPRD:15205	RDM1	RAD52B	RAD52 motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_104556	chr9	94075377	94075540	+	11.40978	NA	intron (NM_001698, intron 4 of 9)	LTR54B|LTR|ERV1	48748	NM_001698	549	Hs.175905	NM_001698	HPRD:08987	AUH	-	AU RNA binding protein/enoyl-CoA hydratase	protein-coding
19-PTNLD28-TUMOR_peak_31159	chr14	71757756	71758055	+	11.40978	NA	Intergenic	Intergenic	-107149	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_43240	chr17	70723948	70724064	+	11.40978	NA	intron (NM_139177, intron 7 of 9)	intron (NM_139177, intron 7 of 9)	-87395	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	ncRNA
19-PTNLD28-TUMOR_peak_4176	chr1	67100125	67100263	+	11.40978	NA	intron (NM_032291, intron 3 of 24)	intron (NM_032291, intron 3 of 24)	6071	NR_036060	100422871		NR_036060		MIR3117	-	microRNA 3117	ncRNA
19-PTNLD28-TUMOR_peak_85141	chr6	7168464	7168634	+	11.40978	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	60463	NM_001003699	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_98829	chr8	55649035	55649194	+	11.40978	NA	Intergenic	MIRb|SINE|MIR	120487	NM_006269	6101	Hs.732820	NM_006269	HPRD:04896	RP1	DCDC4A|ORP1	retinitis pigmentosa 1 (autosomal dominant)	protein-coding
19-PTNLD28-TUMOR_peak_81399	chr5	103121357	103121538	+	11.40978	NA	Intergenic	Intergenic	-222945	NM_031438	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_4027	chr1	63539775	63539960	+	11.40978	NA	Intergenic	Intergenic	243034	NR_038252	199899	Hs.116210	NR_038252		LINC00466	-	long intergenic non-protein coding RNA 466	ncRNA
19-PTNLD28-TUMOR_peak_25868	chr12	103218333	103218469	+	11.40978	NA	promoter-TSS (NR_033855)	promoter-TSS (NR_033855)	-224	NR_033855	283432	Hs.382110	NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
19-PTNLD28-TUMOR_peak_67494	chr3	36338367	36338563	+	11.40978	NA	Intergenic	MIRc|SINE|MIR	-83514	NM_001292049	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_52685	chr2	48094511	48094688	+	11.40978	NA	intron (NM_001190274, intron 1 of 22)	MLT1I|LTR|ERVL-MaLR	21259	NM_025133	80204	Hs.352677	NM_012167	HPRD:06985	FBXO11	FBX11|PRMT9|UBR6|VIT1	F-box protein 11	protein-coding
19-PTNLD28-TUMOR_peak_90126	chr6	154111376	154111544	+	11.40978	NA	Intergenic	Intergenic	-220171	NM_001145280	4988	Hs.2353	NM_000914	HPRD:02484	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor, mu 1	protein-coding
19-PTNLD28-TUMOR_peak_65319	chr22	36576454	36576570	+	11.40978	NA	Intergenic	LTR57-int|LTR|ERVL	-14287	NM_145641	80833	Hs.474737	NM_014349	HPRD:06264	APOL3	APOLIII|CG121	apolipoprotein L, 3	protein-coding
19-PTNLD28-TUMOR_peak_107702	chrX	18167749	18167860	+	11.40978	NA	Intergenic	Intergenic	71220	NM_153346	139105	Hs.403802	NM_153346	HPRD:06646	BEND2	CXorf20	BEN domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_16809	chr11	4561002	4561119	+	11.40978	NA	Intergenic	MamRep605|Unknown|Unknown	-5361	NM_001004137	119772	Hs.553567	NM_001004137	HPRD:15020	OR52M1	OR11-11|OR52M1P|OR52M3P	olfactory receptor, family 52, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_985	chr1	15599109	15599250	+	11.40978	NA	intron (NM_052929, intron 3 of 30)	intron (NM_052929, intron 3 of 30)	25411	NM_052929	114827	Hs.659997	NM_052929	ENSG00000142621	FHAD1	-	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_107764	chrX	21430274	21430390	+	11.40978	NA	intron (NM_001168648, intron 1 of 20)	intron (NM_001168648, intron 1 of 20)	37796	NM_001168648	22866	Hs.555917	NM_014927	HPRD:06473	CNKSR2	CNK2|KSR2|MAGUIN	connector enhancer of kinase suppressor of Ras 2	protein-coding
19-PTNLD28-TUMOR_peak_82995	chr5	146587545	146587652	+	11.40978	NA	Intergenic	L1PA8|LINE|L1	-26981	NM_001112724	202374	Hs.585069	NM_145001	HPRD:15445	STK32A	YANK1	serine/threonine kinase 32A	protein-coding
19-PTNLD28-TUMOR_peak_71760	chr3	151471747	151471970	+	11.40978	NA	intron (NR_110203, intron 2 of 2)	intron (NR_110203, intron 2 of 2)	-16386	NR_026915	201651	Hs.383050	NR_026915	ENSG00000240602	AADACP1	-	arylacetamide deacetylase pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_27518	chr13	25302234	25302402	+	11.40978	NA	Intergenic	Intergenic	-35983	NM_001184993	56163	Hs.97464	NM_031277	HPRD:05779	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
19-PTNLD28-TUMOR_peak_14372	chr10	76333287	76333455	+	11.40978	NA	intron (NM_001123, intron 7 of 10)	L1P1|LINE|L1	-44289	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
19-PTNLD28-TUMOR_peak_69343	chr3	96383724	96383866	+	11.40978	NA	Intergenic	AluY|SINE|Alu	-149630	NM_001080448	285220	Hs.653244	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
19-PTNLD28-TUMOR_peak_75361	chr4	55434459	55434682	+	11.40978	NA	Intergenic	Intergenic	-89525	NM_000222	3815	Hs.479754	NM_000222	HPRD:01287	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_85436	chr6	12622885	12623024	+	11.40978	NA	Intergenic	Intergenic	-94083	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_110087	chrY	1771491	1771622	+	11.40978	NA	Intergenic	Intergenic	87530	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_77675	chr4	154088235	154088420	+	11.40978	NA	intron (NM_001130067, intron 1 of 11)	intron (NM_001130067, intron 1 of 11)	14057	NM_001130067	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_77335	chr4	142267448	142267551	+	11.40978	NA	Intergenic	Intergenic	-13728	NR_121625	100507639	Hs.535010	NR_121625	ENSG00000248810	LOC100507639	-	uncharacterized LOC100507639	ncRNA
19-PTNLD28-TUMOR_peak_23294	chr12	18536139	18536314	+	11.40978	NA	intron (NM_001288774, intron 14 of 32)	intron (NM_001288774, intron 14 of 32)	121752	NM_004570	5288	Hs.22500	NM_004570	HPRD:16416	PIK3C2G	PI3K-C2-gamma|PI3K-C2GAMMA	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma	protein-coding
19-PTNLD28-TUMOR_peak_66169	chr3	954512	954665	+	11.40978	NA	Intergenic	LTR10A|LTR|ERV1	-179754	NM_001289080	27255	Hs.387300	NM_014461	HPRD:06242	CNTN6	NB3	contactin 6	protein-coding
19-PTNLD28-TUMOR_peak_98482	chr8	42381256	42381370	+	11.40978	NA	intron (NM_006749, intron 1 of 10)	L1MC3|LINE|L1	-14985	NM_001135676	114926	Hs.655320	NM_138436	HPRD:14005	SMIM19	C8orf40	small integral membrane protein 19	protein-coding
19-PTNLD28-TUMOR_peak_59811	chr20	11111331	11111573	+	11.40978	NA	Intergenic	Intergenic	142579	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_95688	chr7	137963430	137963554	+	11.40978	NA	Intergenic	L1MD2|LINE|L1	154988	NR_039678	100616226		NR_039678	miRBase:MI0016819	MIR4468	-	microRNA 4468	ncRNA
19-PTNLD28-TUMOR_peak_67672	chr3	40822737	40822924	+	11.40978	NA	Intergenic	Intergenic	256461	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_92370	chr7	46172132	46172288	+	11.40978	NA	Intergenic	Intergenic	-211339	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_85219	chr6	8557048	8557220	+	11.40978	NA	intron (NR_038980, intron 2 of 4)	intron (NR_038980, intron 2 of 4)	-95308	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_107796	chrX	22552882	22553081	+	11.40978	NA	intron (NR_073010, intron 4 of 5)	MLT1H|LTR|ERVL-MaLR	261951	NM_152577	158506	Hs.132485	NM_152577	HPRD:06545	ZNF645	CT138|HAKAIL	zinc finger protein 645	protein-coding
19-PTNLD28-TUMOR_peak_23787	chr12	39884795	39885029	+	11.40978	NA	Intergenic	Intergenic	-47720	NM_001173465	55605	Hs.374201	NM_017641	HPRD:10506	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
19-PTNLD28-TUMOR_peak_97378	chr8	18537910	18538027	+	11.40978	NA	intron (NM_015310, intron 9 of 15)	intron (NM_015310, intron 9 of 15)	128437	NM_206909	23362	Hs.434255	NM_015310	HPRD:11462	PSD3	EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_63995	chr21	46291895	46292101	+	11.40978	NA	intron (NR_104597, intron 1 of 4)	intron (NR_104597, intron 1 of 4)	1820	NM_004339	754	Hs.474010	NM_004339	HPRD:04807	PTTG1IP	C21orf1|C21orf3|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_64191	chr22	17084131	17084251	+	11.40978	NA	intron (NR_001591, intron 1 of 8)	intron (NR_001591, intron 1 of 8)	1390	NR_001591	387590	Hs.474116	NR_001591		TPTEP1	psiTPTE22	transmembrane phosphatase with tensin homology pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_63090	chr21	31222154	31222294	+	11.40978	NA	intron (NM_175611, intron 1 of 15)	intron (NM_175611, intron 1 of 15)	90058	NM_000830	2897	Hs.664641	NM_000830	HPRD:00693	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1	glutamate receptor, ionotropic, kainate 1	protein-coding
19-PTNLD28-TUMOR_peak_81134	chr5	90653132	90653256	+	11.40978	NA	Intergenic	Intergenic	-22970	NR_027435	100129716	Hs.116364	NR_027435		ARRDC3-AS1	-	ARRDC3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51580	chr2	25002129	25002295	+	11.40978	NA	Intergenic	Intergenic	-13963	NM_001199803	79172	Hs.731569	NM_024322	HPRD:14414	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
19-PTNLD28-TUMOR_peak_5890	chr1	118043341	118043529	+	11.40978	NA	intron (NM_006699, intron 11 of 12)	LTR86A2|LTR|ERVL	104957	NR_121626	100996263	Hs.202533	NR_121626	ENSG00000236866	LOC100996263	-	uncharacterized LOC100996263	ncRNA
19-PTNLD28-TUMOR_peak_59009	chr2	236377753	236377908	+	11.40978	NA	Intergenic	Intergenic	-24903	NM_001037131	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_89817	chr6	145310609	145310747	+	11.40978	NA	Intergenic	Intergenic	697805	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_81977	chr5	127244893	127245031	+	11.40978	NA	Intergenic	Intergenic	173804	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
19-PTNLD28-TUMOR_peak_18324	chr11	45376947	45377189	+	11.40978	NA	non-coding (NR_120557, exon 1 of 2)	non-coding (NR_120557, exon 1 of 2)	146	NR_120558	101928812	Hs.444059	NR_120557	ENSG00000254427	LOC101928812	-	uncharacterized LOC101928812	ncRNA
19-PTNLD28-TUMOR_peak_22578	chr12	4022554	4022820	+	11.40978	NA	Intergenic	Intergenic	-40073	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_34133	chr15	67746106	67746204	+	11.40978	NA	intron (NR_040052, intron 3 of 5)	L1PA4|LINE|L1	67156	NR_040055	100506686	Hs.656245	NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24889	chr12	61387081	61387220	+	11.40978	NA	Intergenic	Intergenic	1199470	NM_178539	338811	Hs.269745	NM_178539	HPRD:16876	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	protein-coding
19-PTNLD28-TUMOR_peak_24508	chr12	54202215	54202365	+	11.40978	NA	Intergenic	Intergenic	-51472	NR_104332	102216268	Hs.742074	NR_104332		CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
19-PTNLD28-TUMOR_peak_47169	chr19	10179835	10179951	+	11.40978	NA	intron (NR_027300, intron 23 of 29)	intron (NR_027300, intron 23 of 29)	-16913	NM_018381	55337	Hs.655613	NM_018381	HPRD:07747	C19orf66	-	chromosome 19 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_45336	chr18	37504757	37505033	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-141355	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
19-PTNLD28-TUMOR_peak_107780	chrX	22078852	22079065	+	11.40978	NA	intron (NM_001282754, intron 3 of 20)	intron (NM_001282754, intron 3 of 20)	28396	NM_001282754	5251	Hs.495834	NM_000444	HPRD:02387	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase homolog, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_109180	chrX	110242263	110242374	+	11.40978	NA	intron (NM_001128167, intron 1 of 14)	intron (NM_001128167, intron 1 of 14)	54805	NM_001128167	5063	Hs.593599	NM_002578	HPRD:02142	PAK3	CDKN1A|MRX30|MRX47|OPHN3|PAK3beta|bPAK|hPAK3	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_12871	chr10	33810155	33810253	+	11.40978	NA	Intergenic	Intergenic	-186371	NM_001244973	8829	Hs.131704	NM_003873	HPRD:03642	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
19-PTNLD28-TUMOR_peak_30535	chr14	58526936	58527053	+	11.40978	NA	intron (NM_001001872, intron 5 of 7)	intron (NM_001001872, intron 5 of 7)	91853	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
19-PTNLD28-TUMOR_peak_92211	chr7	43531704	43531806	+	11.40978	NA	exon (NM_001287059, exon 16 of 28)	exon (NM_001287059, exon 16 of 28)	30386	NR_038276	100506895	Hs.676047	NR_038276	ENSG00000231638	LOC100506895	-	uncharacterized LOC100506895	ncRNA
19-PTNLD28-TUMOR_peak_85182	chr6	7692501	7692650	+	11.40978	NA	Intergenic	Intergenic	-34436	NM_001718	654	Hs.285671	NM_001718	HPRD:00211	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
19-PTNLD28-TUMOR_peak_12800	chr10	32058570	32058736	+	11.40978	NA	Intergenic	Charlie7|DNA|hAT-Charlie	139201	NM_001270699	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_1159	chr1	17624536	17624806	+	11.40978	NA	Intergenic	Intergenic	-10019	NM_012387	23569	Hs.522969	NM_012387	HPRD:05635	PADI4	PAD|PAD4|PADI5|PDI4|PDI5	peptidyl arginine deiminase, type IV	protein-coding
19-PTNLD28-TUMOR_peak_99154	chr8	71227916	71228113	+	11.40978	NA	intron (NM_006540, intron 1 of 22)	intron (NM_006540, intron 1 of 22)	88006	NM_006540	10499	Hs.446678	NM_006540	HPRD:09066	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
19-PTNLD28-TUMOR_peak_74546	chr4	12634763	12634921	+	11.40978	NA	Intergenic	Intergenic	851147	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_10028	chr1	214510893	214511157	+	11.40978	NA	TTS (NM_020197)	TTS (NM_020197)	56460	NM_020197	56950	Hs.66170	NM_020197	HPRD:15406	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_70846	chr3	131676979	131677095	+	11.40978	NA	intron (NM_001289112, intron 1 of 15)	MIRb|SINE|MIR	27738	NR_049890	100847040		NR_049890		MIR5704	-	microRNA 5704	ncRNA
19-PTNLD28-TUMOR_peak_9822	chr1	207818338	207818547	+	11.40978	NA	promoter-TSS (NM_175710)	promoter-TSS (NM_175710)	-16	NM_175710	1379	Hs.628568	NM_175710	ENSG00000197721	CR1L	-	complement component (3b/4b) receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_26395	chr12	113486608	113486759	+	11.40978	NA	Intergenic	Intergenic	-8979	NM_004416	1840	Hs.372152	NM_004416	HPRD:03991	DTX1	hDx-1	deltex 1, E3 ubiquitin ligase	protein-coding
19-PTNLD28-TUMOR_peak_104324	chr9	89574535	89574726	+	11.40978	NA	intron (NR_049794, intron 2 of 6)	AluY|SINE|Alu	11017	NR_049794	100506834	Hs.553987	NR_049794	ENSG00000226237	LOC100506834	-	uncharacterized LOC100506834	ncRNA
19-PTNLD28-TUMOR_peak_13491	chr10	49298898	49299024	+	11.40978	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-59303	NR_029396	414224	Hs.645213	NR_029396	ENSG00000179296	CTGLF12P	-	centaurin, gamma-like family, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_45756	chr18	48275337	48275494	+	11.40978	NA	Intergenic	Intergenic	71019	NM_001127176	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_107703	chrX	18304639	18304824	+	11.40978	NA	intron (NR_033717, intron 7 of 15)	intron (NR_033717, intron 7 of 15)	-65707	NM_001184767	139105	Hs.403802	NM_153346	HPRD:06646	BEND2	CXorf20	BEN domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_76677	chr4	114199617	114199714	+	11.40978	NA	exon (NM_001148, exon 17 of 46)	exon (NM_001148, exon 17 of 46)	126227	NR_107049	102465878		NR_107049		MIR8082	hsa-mir-8082	microRNA 8082	ncRNA
19-PTNLD28-TUMOR_peak_20458	chr11	86437505	86437722	+	11.40978	NA	Intergenic	Intergenic	-53935	NM_001161586	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_77141	chr4	139229666	139229829	+	11.40978	NA	Intergenic	Intergenic	-1118	NR_051987	100874047	Hs.570848	NR_051987	ENSG00000251372	LINC00499	-	long intergenic non-protein coding RNA 499	ncRNA
19-PTNLD28-TUMOR_peak_74919	chr4	36583887	36584118	+	11.40978	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	298358	NM_001170700	401124	Hs.363407	NM_001136536		DTHD1	-	death domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_45177	chr18	32309370	32309512	+	11.40978	NA	intron (NM_032978, intron 1 of 16)	intron (NM_032978, intron 1 of 16)	19245	NM_001198941	1837	Hs.643454	NM_001390	HPRD:03141	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_76308	chr4	95749008	95749142	+	11.40978	NA	intron (NM_001203, intron 1 of 12)	MIRc|SINE|MIR	69947	NM_001203	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_81119	chr5	90483435	90483629	+	11.40978	NA	Intergenic	Intergenic	126687	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_34708	chr15	78911032	78911248	+	11.40978	NA	non-coding (NR_046313, exon 2 of 8)	non-coding (NR_046313, exon 2 of 8)	2497	NM_001166694	1136	Hs.89605	NM_000743	HPRD:07511	CHRNA3	LNCR2|NACHRA3|PAOD2	cholinergic receptor, nicotinic, alpha 3 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_43529	chr17	74178360	74178505	+	11.40978	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-41052	NM_001454	2302	Hs.651204	NM_001454	HPRD:03798	FOXJ1	FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
19-PTNLD28-TUMOR_peak_53638	chr2	76323322	76323449	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	-385274	NM_001201335	6936	Hs.303808	NM_003203	HPRD:01791	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_45666	chr18	46941891	46942038	+	11.40978	NA	intron (NM_017653, intron 2 of 16)	intron (NM_017653, intron 2 of 16)	45115	NM_017653	54808	Hs.162996	NM_017653	HPRD:08469	DYM	DMC|SMC	dymeclin	protein-coding
19-PTNLD28-TUMOR_peak_77540	chr4	150217642	150217942	+	11.40978	NA	Intergenic	Intergenic	-781634	NM_001040260	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_100148	chr8	114774893	114775029	+	11.40978	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-325719	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_100404	chr8	121613905	121614179	+	11.40978	NA	intron (NM_021021, intron 3 of 6)	intron (NM_021021, intron 3 of 6)	-156395	NM_014078	28998	Hs.333823	NM_014078	HPRD:14740	MRPL13	L13|L13A|L13mt|RPL13|RPML13	mitochondrial ribosomal protein L13	protein-coding
19-PTNLD28-TUMOR_peak_91918	chr7	32816960	32817182	+	11.40978	NA	Intergenic	Intergenic	19173	NR_036501	401321	Hs.627604	NR_036501		LINC00997	-	long intergenic non-protein coding RNA 997	ncRNA
19-PTNLD28-TUMOR_peak_110304	chrY	19178545	19178735	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-434198	NR_028083	340618	Hs.434364	NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41, member A, Y-linked 1	ncRNA
19-PTNLD28-TUMOR_peak_78263	chr4	184707254	184707360	+	11.40978	NA	Intergenic	AluSz|SINE|Alu	-119202	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_40952	chr17	30169674	30169799	+	11.40978	NA	Intergenic	Intergenic	16590	NM_018405	55352	Hs.462729	NM_018405	HPRD:13675	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5, differentiation stimulator	protein-coding
19-PTNLD28-TUMOR_peak_47849	chr19	16882490	16882603	+	11.40978	NA	intron (NM_001290355, intron 11 of 20)	intron (NM_001290355, intron 11 of 20)	51759	NM_001290355	284434	Hs.406014	NM_001007525	HPRD:17337	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_88766	chr6	91037841	91038016	+	11.40978	NA	Intergenic	Intergenic	15467	NR_039671	100616109		NR_039671	miRBase:MI0016812	MIR4464	-	microRNA 4464	ncRNA
19-PTNLD28-TUMOR_peak_81229	chr5	95493170	95493304	+	11.40978	NA	Intergenic	Intergenic	78395	NR_030309	693168		NR_030309	miRBase:MI0003590	MIR583	MIRN583|hsa-mir-583	microRNA 583	ncRNA
19-PTNLD28-TUMOR_peak_40391	chr17	17569705	17569827	+	11.40978	NA	Intergenic	Intergenic	-15021	NM_030665	10743	Hs.655395	NM_030665	HPRD:07406	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
19-PTNLD28-TUMOR_peak_77769	chr4	156626936	156627120	+	11.40978	NA	intron (NM_001256449, intron 4 of 9)	intron (NM_001256449, intron 4 of 9)	38213	NM_001130684	2982	Hs.24258	NM_000856	HPRD:00768	GUCY1A3	GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1|MYMY6	guanylate cyclase 1, soluble, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_58611	chr2	224467037	224467166	+	11.40978	NA	5' UTR (NM_003469, exon 1 of 2)	5' UTR (NM_003469, exon 1 of 2)	116	NM_003469	7857	Hs.516726	NM_003469	HPRD:06762	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
19-PTNLD28-TUMOR_peak_61056	chr20	38788855	38788968	+	11.40978	NA	Intergenic	Intergenic	155808	NR_109937	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_56491	chr2	158755204	158755308	+	11.40978	NA	Intergenic	Intergenic	-22882	NM_001111067	90	Hs.470316	NM_001105	HPRD:00021	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor, type I	protein-coding
19-PTNLD28-TUMOR_peak_34012	chr15	65470384	65470548	+	11.40978	NA	intron (NM_006660, intron 3 of 13)	intron (NM_006660, intron 3 of 13)	7097	NM_006660	10845	Hs.113823	NM_006660		CLPX	-	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding
19-PTNLD28-TUMOR_peak_55761	chr2	132170851	132170951	+	11.40978	NA	Intergenic	Intergenic	10427	NR_036499	389043	Hs.586791	NR_036499		LINC01120	-	long intergenic non-protein coding RNA 1120	ncRNA
19-PTNLD28-TUMOR_peak_99333	chr8	81812015	81812264	+	11.40978	NA	Intergenic	L1MB5|LINE|L1	-25123	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
19-PTNLD28-TUMOR_peak_93601	chr7	78779313	78779447	+	11.40978	NA	intron (NM_001301128, intron 1 of 20)	intron (NM_001301128, intron 1 of 20)	141076	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_44982	chr18	23366877	23367005	+	11.40978	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	303670	NM_001007559	6760	Hs.129261	NM_005637	HPRD:02559	SS18	SSXT|SYT	synovial sarcoma translocation, chromosome 18	protein-coding
19-PTNLD28-TUMOR_peak_65388	chr22	37562677	37562817	+	11.40978	NA	Intergenic	Intergenic	-16785	NM_000878	3560	Hs.474787	NM_000878	HPRD:00896	IL2RB	CD122|IL15RB|P70-75	interleukin 2 receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_20878	chr11	102651260	102651386	+	11.40978	NA	promoter-TSS (NM_002425)	promoter-TSS (NM_002425)	36	NM_002425	4319	Hs.2258	NM_002425	HPRD:01704	MMP10	SL-2|STMY2	matrix metallopeptidase 10 (stromelysin 2)	protein-coding
19-PTNLD28-TUMOR_peak_42998	chr17	64319036	64319259	+	11.40978	NA	intron (NM_002737, intron 2 of 16)	L1ME3B|LINE|L1	20221	NM_002737	5578	Hs.531704	NM_002737	HPRD:01498	PRKCA	AAG6|PKC-alpha|PKCA|PRKACA	protein kinase C, alpha	protein-coding
19-PTNLD28-TUMOR_peak_38645	chr16	72076186	72076552	+	11.40978	NA	Intergenic	Intergenic	-12139	NM_001126102	3240	Hs.513711	NM_005143	HPRD:00772	HP	BP|HP2ALPHA2|HPA1S	haptoglobin	protein-coding
19-PTNLD28-TUMOR_peak_38541	chr16	70339092	70339236	+	11.40978	NA	intron (NM_001257175, intron 1 of 8)	HAL1|LINE|L1	6102	NM_007242	11269	Hs.221761	NM_007242	HPRD:05781	DDX19B	DBP5|DDX19|RNAh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B	protein-coding
19-PTNLD28-TUMOR_peak_102162	chr9	9400102	9400245	+	11.40978	NA	intron (NM_002839, intron 8 of 45)	intron (NM_002839, intron 8 of 45)	542155	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62960	chr21	26758384	26758519	+	11.40978	NA	non-coding (NR_024027, exon 5 of 5)	non-coding (NR_024027, exon 5 of 5)	45562	NR_024027	54072	Hs.234016	NM_058184	HPRD:10748	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
19-PTNLD28-TUMOR_peak_75579	chr4	69046980	69047155	+	11.40978	NA	promoter-TSS (NR_015446)	promoter-TSS (NR_015446)	-943	NR_015446	100130017	Hs.582037	NR_015446	ENSG00000250426	FTLP10	-	ferritin, light polypeptide pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_9268	chr1	201828760	201829061	+	11.40978	NA	intron (NM_018085, intron 13 of 23)	AluSx1|SINE|Alu	-3591	NR_106797	102466724		NR_106797		MIR6739	hsa-mir-6739	microRNA 6739	ncRNA
19-PTNLD28-TUMOR_peak_76763	chr4	119686635	119686782	+	11.40978	NA	intron (NM_014822, intron 9 of 22)	intron (NM_014822, intron 9 of 22)	70618	NM_014822	9871	Hs.189641	NM_014822	HPRD:06218	SEC24D	-	SEC24 family member D	protein-coding
19-PTNLD28-TUMOR_peak_100232	chr8	118057063	118057185	+	11.40978	NA	intron (NM_001172815, intron 2 of 10)	intron (NM_001172815, intron 2 of 10)	-90213	NM_173851	169026	Hs.532270	NM_173851	HPRD:15370	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_41401	chr17	38804310	38804636	+	11.40978	NA	promoter-TSS (NM_003079)	promoter-TSS (NM_003079)	-370	NM_003079	6605	Hs.743978	NM_003079	HPRD:04382	SMARCE1	BAF57	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
19-PTNLD28-TUMOR_peak_5081	chr1	96953140	96953253	+	11.40978	NA	Intergenic	Intergenic	-113515	NR_110693	101928241	Hs.514137	NR_110693	ENSG00000231987	LOC101928241	-	uncharacterized LOC101928241	ncRNA
19-PTNLD28-TUMOR_peak_93038	chr7	69033351	69033472	+	11.40978	NA	Intergenic	Intergenic	29070	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_64958	chr22	29059657	29059771	+	11.40978	NA	intron (NM_001145418, intron 1 of 22)	L1HS|LINE|L1	16139	NM_001145418	23331	Hs.387856	NM_015281	HPRD:10020	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_52877	chr2	56236259	56236470	+	11.40978	NA	Intergenic	Intergenic	-8434	NR_030623	100126319		NR_030623	miRBase:MI0005569	MIR216B	MIRN216B	microRNA 216b	ncRNA
19-PTNLD28-TUMOR_peak_81238	chr5	95804771	95804953	+	11.40978	NA	Intergenic	Intergenic	-35877	NM_000439	5122	Hs.78977	NM_000439	HPRD:01201	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
19-PTNLD28-TUMOR_peak_33431	chr15	45526821	45527079	+	11.40978	NA	Intergenic	LTR14C|LTR|ERVK	-17478	NM_004212	9153	Hs.367833	NM_004212	HPRD:07069	SLC28A2	CNT2|HCNT2|HsT17153|SPNT1	solute carrier family 28 (concentrative nucleoside transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_79627	chr5	39788176	39788308	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-264151	NR_104633	102467077	Hs.148993	NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
19-PTNLD28-TUMOR_peak_30557	chr14	59051275	59051399	+	11.40978	NA	Intergenic	L1ME1|LINE|L1	-49449	NR_046093	51339	Hs.48950	NM_016651	HPRD:09709	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding
19-PTNLD28-TUMOR_peak_76539	chr4	108981454	108981581	+	11.40978	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	70647	NM_005327	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_72541	chr3	178111740	178111897	+	11.40978	NA	Intergenic	L1MEg1|LINE|L1	-25171	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
19-PTNLD28-TUMOR_peak_107861	chrX	27833357	27833602	+	11.40978	NA	intron (NM_182506, intron 1 of 2)	intron (NM_182506, intron 1 of 2)	7372	NM_182506	139422	Hs.447363	NM_182506	HPRD:06554	MAGEB10	-	melanoma antigen family B, 10	protein-coding
19-PTNLD28-TUMOR_peak_80225	chr5	62421732	62421937	+	11.40978	NA	Intergenic	Intergenic	547272	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_94033	chr7	95130068	95130288	+	11.40978	NA	intron (NM_016116, intron 2 of 4)	intron (NM_016116, intron 2 of 4)	14965	NM_145872	51666	Hs.602765	NM_016116	HPRD:05770	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_90490	chr6	166928716	166928881	+	11.40978	NA	intron (NM_001006932, intron 4 of 21)	intron (NM_001006932, intron 4 of 21)	-5877	NR_031734	100302141		NR_031734		MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	ncRNA
19-PTNLD28-TUMOR_peak_32076	chr14	100891140	100891338	+	11.40978	NA	intron (NM_001161476, intron 2 of 6)	intron (NM_001161476, intron 2 of 6)	48406	NM_024515	79446	Hs.497600	NM_024515	HPRD:14649	WDR25	C14orf67	WD repeat domain 25	protein-coding
19-PTNLD28-TUMOR_peak_35415	chr15	98999267	98999489	+	11.40978	NA	intron (NM_182562, intron 4 of 6)	Tigger3b|DNA|TcMar-Tigger	58233	NM_182562	283777	Hs.668070	NM_182562	HPRD:08265	FAM169B	-	family with sequence similarity 169, member B	protein-coding
19-PTNLD28-TUMOR_peak_110385	chrY	59051715	59051847	+	11.40978	NA	Intergenic	L1MA3|LINE|L1	-48676	NM_005840	10251	Hs.381912	NM_005840	HPRD:03917	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_38874	chr16	79394315	79394461	+	11.40978	NA	Intergenic	MIRb|SINE|MIR	240234	NM_005360	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_58240	chr2	214437742	214437996	+	11.40978	NA	intron (NR_047659, intron 12 of 17)	L1HS|LINE|L1	288766	NR_047659	79582	Hs.743365	NM_024532	HPRD:18089	SPAG16	PF20|WDR29	sperm associated antigen 16	protein-coding
19-PTNLD28-TUMOR_peak_34638	chr15	77448400	77448536	+	11.40978	NA	intron (NM_024776, intron 6 of 7)	L1PA4|LINE|L1	69278	NR_026813	81698	Hs.656938	NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
19-PTNLD28-TUMOR_peak_12291	chr10	20783545	20783668	+	11.40978	NA	Intergenic	L1MCb|LINE|L1	-57293	NR_039822	100616383		NR_039822	miRBase:MI0017306	MIR4675	-	microRNA 4675	ncRNA
19-PTNLD28-TUMOR_peak_28928	chr13	105009639	105009801	+	11.40978	NA	Intergenic	Intergenic	-1074872	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_20219	chr11	77711316	77711478	+	11.40978	NA	Intergenic	ERVL-E-int|LTR|ERVL	-5680	NM_033547	92105	Hs.533723	NM_033547	HPRD:12386	INTS4	INT4|MST093	integrator complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_108830	chrX	79661106	79661357	+	11.40978	NA	intron (NM_001170574, intron 3 of 4)	L1PA3|LINE|L1	-14715	NM_152630	169966	Hs.367959	NM_152630	HPRD:06643	FAM46D	CT1.26|CT112	family with sequence similarity 46, member D	protein-coding
19-PTNLD28-TUMOR_peak_78397	chr4	187037363	187037533	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-28547	NM_015398	25854	Hs.744961	NM_015398	HPRD:16810	FAM149A	MSTP119	family with sequence similarity 149, member A	protein-coding
19-PTNLD28-TUMOR_peak_14772	chr10	89248604	89248770	+	11.40978	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-14951	NR_039825	100616296		NR_039825		MIR4678	-	microRNA 4678	ncRNA
19-PTNLD28-TUMOR_peak_88994	chr6	108181347	108181483	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	-35894	NM_198081	256380	Hs.486109	NM_198081		SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_83270	chr5	150872430	150872543	+	11.40978	NA	TTS (NM_078483)	TTS (NM_078483)	29223	NR_106752	102465246		NR_106752		MIR6499	hsa-mir-6499	microRNA 6499	ncRNA
19-PTNLD28-TUMOR_peak_105071	chr9	104864213	104864389	+	11.40978	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-363439	NM_133445	116443	Hs.654783	NM_133445	HPRD:09443	GRIN3A	GluN3A|NMDAR-L|NR3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	protein-coding
19-PTNLD28-TUMOR_peak_80164	chr5	60609976	60610140	+	11.40978	NA	Intergenic	Intergenic	-18042	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_30874	chr14	67893997	67894142	+	11.40978	NA	Intergenic	Intergenic	-15241	NM_016445	26499	Hs.170473	NM_016445	HPRD:12151	PLEK2	-	pleckstrin 2	protein-coding
19-PTNLD28-TUMOR_peak_23726	chr12	34395497	34395751	+	11.40978	NA	Intergenic	L1M1|LINE|L1	220408	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_88883	chr6	100193661	100193840	+	11.40978	NA	Intergenic	Intergenic	139100	NM_021620	59336	Hs.287386	NM_021620		PRDM13	MU-MB-20.220|PFM10	PR domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_45843	chr18	53388548	53388661	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	-85380	NM_001243226	6925	Hs.605153	NM_003199	HPRD:03780	TCF4	E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_77454	chr4	146803122	146803428	+	11.40978	NA	intron (NM_178835, intron 4 of 14)	intron (NM_178835, intron 4 of 14)	56332	NM_178835	152485	Hs.633543	NM_178835	HPRD:14095	ZNF827	-	zinc finger protein 827	protein-coding
19-PTNLD28-TUMOR_peak_43177	chr17	68455505	68455643	+	11.40978	NA	Intergenic	L1HS|LINE|L1	289898	NM_000891	3759	Hs.1547	NM_000891	HPRD:02815	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
19-PTNLD28-TUMOR_peak_109647	chrX	140435512	140435895	+	11.40978	NA	Intergenic	Intergenic	-155140	NR_037183	619455	Hs.590784	NR_037183		SPANXA2-OT1	CXorf18	SPANXA2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_89926	chr6	149753230	149753342	+	11.40978	NA	Intergenic	Intergenic	31791	NM_001002255	387082	Hs.657168	NM_001002255	HPRD:10584	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin-like modifier 4	protein-coding
19-PTNLD28-TUMOR_peak_83516	chr5	157627752	157627848	+	11.40978	NA	Intergenic	Intergenic	208981	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_6910	chr1	152939719	152939876	+	11.40978	NA	Intergenic	Intergenic	-3331	NM_173080	163778	Hs.433629	NM_173080	HPRD:18101	SPRR4	-	small proline-rich protein 4	protein-coding
19-PTNLD28-TUMOR_peak_18692	chr11	57792196	57792492	+	11.40978	NA	intron (NM_001005212, intron 1 of 2)	intron (NM_001005212, intron 1 of 2)	991	NM_001005212	219956	Hs.689841	NM_001005212	HPRD:17800	OR9Q1	-	olfactory receptor, family 9, subfamily Q, member 1	protein-coding
19-PTNLD28-TUMOR_peak_56513	chr2	159524156	159524302	+	11.40978	NA	intron (NM_001005476, intron 16 of 20)	intron (NM_001005476, intron 16 of 20)	-127600	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_59869	chr20	13411332	13411624	+	11.40978	NA	intron (NM_017714, intron 12 of 13)	intron (NM_017714, intron 12 of 13)	-191144	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25042	chr12	66114059	66114207	+	11.40978	NA	Intergenic	AluSx3|SINE|Alu	-77981	NR_120431	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_46039	chr18	58989650	58989785	+	11.40978	NA	Intergenic	Intergenic	-168058	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_83811	chr5	169197728	169197924	+	11.40978	NA	intron (NM_004946, intron 25 of 51)	L1ME3F|LINE|L1	133575	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_11386	chr1	244267759	244267977	+	11.40978	NA	Intergenic	L2a|LINE|L2	51361	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_25343	chr12	75374444	75374696	+	11.40978	NA	Intergenic	Intergenic	228958	NM_001260498	3747	Hs.27214	NM_139136	HPRD:08883	KCNC2	KV3.2	potassium voltage-gated channel, Shaw-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28287	chr13	52192780	52193115	+	11.40978	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	34463	NM_052950	115825	Hs.46506	NM_052950	HPRD:18294	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_23760	chr12	38569468	38569648	+	11.40978	NA	Intergenic	Intergenic	-140999	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_104515	chr9	93013718	93013845	+	11.40978	NA	Intergenic	L1ME3E|LINE|L1	181990	NR_109795	101927873	Hs.598482	NR_109795		LINC01508	-	long intergenic non-protein coding RNA 1508	ncRNA
19-PTNLD28-TUMOR_peak_14984	chr10	95883166	95883285	+	11.40978	NA	intron (NM_001165979, intron 1 of 31)	intron (NM_001165979, intron 1 of 31)	-14674	NR_120616	101927049	Hs.144492	NR_120615		PLCE1-AS2	-	PLCE1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_75586	chr4	69317795	69317963	+	11.40978	NA	intron (NM_014058, intron 1 of 9)	intron (NM_014058, intron 1 of 9)	4712	NM_014058	28983	Hs.201877	NM_014058	HPRD:09912	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane protease, serine 11E	protein-coding
19-PTNLD28-TUMOR_peak_23285	chr12	17926708	17926866	+	11.40978	NA	Intergenic	L1PA2|LINE|L1	100554	NR_039770	100616279		NR_039770		MIR3974	-	microRNA 3974	ncRNA
19-PTNLD28-TUMOR_peak_46582	chr19	1360858	1361198	+	11.40978	NA	non-coding (NR_024247, exon 5 of 14)	non-coding (NR_024247, exon 5 of 14)	4705	NR_024247	84939	Hs.515016	NM_032853	HPRD:14789	MUM1	EXPAND1|HSPC211|MUM-1	melanoma associated antigen (mutated) 1	protein-coding
19-PTNLD28-TUMOR_peak_53695	chr2	82257940	82258053	+	11.40978	NA	Intergenic	LTR14C|LTR|ERVK	-563926	NR_110161	100507201	Hs.98589	NR_110161		LOC100507201	-	uncharacterized LOC100507201	ncRNA
19-PTNLD28-TUMOR_peak_90437	chr6	163277968	163278115	+	11.40978	NA	intron (NM_152410, intron 3 of 6)	intron (NM_152410, intron 3 of 6)	129039	NM_001080379	135138	Hs.25791	NM_152410	HPRD:07465	PACRG	GLUP|HAK005771|PARK2CRG	PARK2 co-regulated	protein-coding
19-PTNLD28-TUMOR_peak_84790	chr6	2460355	2460750	+	11.40978	NA	Intergenic	Intergenic	174746	NM_152554	154386	Hs.680574	NM_152554		C6orf195	bA145H9.2	chromosome 6 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_83971	chr5	172043968	172044073	+	11.40978	NA	Intergenic	Intergenic	-24256	NM_001142651	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
19-PTNLD28-TUMOR_peak_72443	chr3	175064860	175064967	+	11.40978	NA	intron (NM_207015, intron 5 of 13)	intron (NM_207015, intron 5 of 13)	-22416	NR_039952	100616395		NR_039952		MIR4789	-	microRNA 4789	ncRNA
19-PTNLD28-TUMOR_peak_21746	chr11	122603589	122603708	+	11.40978	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	77250	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_93108	chr7	71932375	71932470	+	11.40978	NA	Intergenic	Intergenic	-55062	NM_031468	83698	Hs.592750	NM_031468	HPRD:06209	CALN1	CABP8	calneuron 1	protein-coding
19-PTNLD28-TUMOR_peak_104089	chr9	83854378	83854627	+	11.40978	NA	Intergenic	MER77|LTR|ERVL	449094	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_68177	chr3	50046604	50046762	+	11.40978	NA	intron (NM_005777, intron 6 of 20)	intron (NM_005777, intron 6 of 20)	69206	NM_001167582	10180	Hs.696735	NM_005777	HPRD:06054	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
19-PTNLD28-TUMOR_peak_28619	chr13	81980266	81980403	+	11.40978	NA	Intergenic	Intergenic	387808	NR_125770	103724386	Hs.539622	NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
19-PTNLD28-TUMOR_peak_80645	chr5	73060553	73060712	+	11.40978	NA	intron (NM_001080479, intron 4 of 36)	intron (NM_001080479, intron 4 of 36)	-48711	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_88360	chr6	74639297	74639423	+	11.40978	NA	Intergenic	L1M2a|LINE|L1	-139807	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_94964	chr7	120042579	120042719	+	11.40978	NA	intron (NM_012281, intron 1 of 5)	intron (NM_012281, intron 1 of 5)	128927	NM_012281	3751	Hs.654739	NM_012281	HPRD:09254	KCND2	KV4.2|RK5	potassium voltage-gated channel, Shal-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_107544	chrX	11359626	11359971	+	11.40978	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	48265	NM_182680	265	Hs.654436	NM_001142	HPRD:02313	AMELX	AI1E|AIH1|ALGN|AMG|AMGL|AMGX	amelogenin, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_74540	chr4	11905761	11906185	+	11.40978	NA	Intergenic	MIR|SINE|MIR	-475436	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_19439	chr11	66717643	66717867	+	11.40978	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	8092	NM_001040716	5091	Hs.89890	NM_000920	HPRD:02032	PC	PCB	pyruvate carboxylase	protein-coding
19-PTNLD28-TUMOR_peak_40890	chr17	28576529	28576840	+	11.40978	NA	intron (NM_000386, intron 11 of 11)	intron (NM_000386, intron 11 of 11)	-13698	NM_001045	6532	Hs.29792	NM_001045	HPRD:01640	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 (neurotransmitter transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_44686	chr18	12934603	12934712	+	11.40978	NA	Intergenic	Intergenic	-13326	NM_031216	81929	Hs.301048	NM_031216	HPRD:15319	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_33599	chr15	52436180	52436429	+	11.40978	NA	intron (NM_016194, intron 6 of 12)	L4|LINE|RTE	-31332	NM_020396	10017	Hs.283672	NM_020396	HPRD:06071	BCL2L10	BCL-B|Boo|Diva	BCL2-like 10 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_75058	chr4	40843084	40843255	+	11.40978	NA	intron (NM_001166051, intron 1 of 6)	intron (NM_001166051, intron 1 of 6)	16003	NM_001166051	323	Hs.479602	NM_004307	HPRD:04088	APBB2	FE65L|FE65L1	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_44264	chr18	2180738	2180988	+	11.40978	NA	Intergenic	LTR16A|LTR|ERVL	390626	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_10135	chr1	220469686	220469821	+	11.40978	NA	Intergenic	Intergenic	-23910	NM_012414	25782	Hs.654849	NM_012414	HPRD:11471	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating protein subunit 2 (non-catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_65601	chr22	40030965	40031085	+	11.40978	NA	intron (NM_001003406, intron 5 of 35)	intron (NM_001003406, intron 5 of 35)	64267	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_89493	chr6	133057540	133057714	+	11.40978	NA	Intergenic	Intergenic	-1723	NM_001291703	55350	Hs.183656	NM_018399	HPRD:09420	VNN3	HSA238982	vanin 3	protein-coding
19-PTNLD28-TUMOR_peak_30466	chr14	56261475	56261644	+	11.40978	NA	intron (NR_026796, intron 1 of 3)	MLT1F2|LTR|ERVL-MaLR	1833	NR_026796	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
19-PTNLD28-TUMOR_peak_35250	chr15	91576342	91576548	+	11.40978	NA	Intergenic	Intergenic	10593	NR_110104	101926911	Hs.459366	NR_110104	ENSG00000214432	LOC101926911	-	uncharacterized LOC101926911	ncRNA
19-PTNLD28-TUMOR_peak_98516	chr8	43015474	43015596	+	11.40978	NA	intron (NM_152419, intron 4 of 17)	intron (NM_152419, intron 4 of 17)	19943	NM_152419	138050	Hs.600384	NM_152419	ENSG00000165102	HGSNAT	HGNAT|MPS3C|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_67069	chr3	19943497	19943680	+	11.40978	NA	intron (NM_144715, intron 6 of 12)	intron (NM_144715, intron 6 of 12)	32118	NM_144715	151651	Hs.733920	NM_144715	HPRD:08054	EFHB	CFAP21	EF-hand domain family, member B	protein-coding
19-PTNLD28-TUMOR_peak_51192	chr2	12427633	12427783	+	11.40978	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	280466	NR_110196	100506457	Hs.197824	NR_110196	ENSG00000224184	LOC100506457	-	uncharacterized LOC100506457	ncRNA
19-PTNLD28-TUMOR_peak_11290	chr1	241051458	241051574	+	11.40978	NA	intron (NM_001282773, intron 4 of 15)	intron (NM_001282773, intron 4 of 15)	-244056	NR_036069	100422856		NR_036069	miRBase:MI0014139	MIR3123	-	microRNA 3123	ncRNA
19-PTNLD28-TUMOR_peak_52758	chr2	52233544	52233698	+	11.40978	NA	Intergenic	LTR17|LTR|ERV1	-973947	NM_001135659	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_65762	chr22	43031669	43031805	+	11.40978	NA	intron (NM_001171660, intron 2 of 8)	intron (NM_001171660, intron 2 of 8)	4870	NM_001165877	267020	Hs.664737	NM_001165877	ENSG00000249222	ATP5L2	ATP5K2	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2	protein-coding
19-PTNLD28-TUMOR_peak_77942	chr4	166382685	166382891	+	11.40978	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	75394	NR_030304	693163		NR_030304		MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
19-PTNLD28-TUMOR_peak_92976	chr7	67069932	67070052	+	11.40978	NA	Intergenic	LTR8|LTR|ERV1	269029	NR_108104	101929736	Hs.634050	NR_108104		LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
19-PTNLD28-TUMOR_peak_107550	chrX	11647770	11647967	+	11.40978	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	35953	NM_013427	395	Hs.435291	NM_001174	HPRD:02124	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
19-PTNLD28-TUMOR_peak_45319	chr18	36812451	36812833	+	11.40978	NA	intron (NR_024391, intron 3 of 3)	intron (NR_024391, intron 3 of 3)	-444043	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_30704	chr14	62910676	62910809	+	11.40978	NA	Intergenic	HAL1|LINE|L1	-304051	NR_104063	101954204	Hs.607093	NR_104063		LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
19-PTNLD28-TUMOR_peak_108572	chrX	65206127	65206317	+	11.40978	NA	Intergenic	Intergenic	-32490	NR_029637	407008		NR_029637	miRBase:MI0000300	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
19-PTNLD28-TUMOR_peak_77460	chr4	147087080	147087289	+	11.40978	NA	Intergenic	L1MB1|LINE|L1	-9651	NM_007080	11157	Hs.190520	NM_007080	HPRD:06286	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_21840	chr11	124197447	124197736	+	11.40978	NA	Intergenic	LTR19B|LTR|ERV1	-7498	NM_001002918	283160	Hs.504212	NM_001002918	HPRD:15081	OR8D2	JCG2	olfactory receptor, family 8, subfamily D, member 2	protein-coding
19-PTNLD28-TUMOR_peak_70001	chr3	118220046	118220158	+	11.40978	NA	Intergenic	Intergenic	-441821	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_77959	chr4	168021347	168021535	+	11.40978	NA	intron (NM_016950, intron 2 of 11)	intron (NM_016950, intron 2 of 11)	134136	NM_001204353	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_81362	chr5	101426613	101426725	+	11.40978	NA	Intergenic	Intergenic	205584	NM_180991	353189	Hs.127648	NM_180991	HPRD:12354	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family, member 4C1	protein-coding
19-PTNLD28-TUMOR_peak_25027	chr12	65824817	65825043	+	11.40978	NA	intron (NM_001193460, intron 6 of 7)	intron (NM_001193460, intron 6 of 7)	152163	NM_001193461	253827	Hs.339024	NM_198080	HPRD:14785	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
19-PTNLD28-TUMOR_peak_21909	chr11	125744543	125744642	+	11.40978	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-8917	NM_145014	219844	Hs.98133	NM_145014	HPRD:08148	HYLS1	HLS	hydrolethalus syndrome 1	protein-coding
19-PTNLD28-TUMOR_peak_19154	chr11	64206809	64207105	+	11.40978	NA	Intergenic	Intergenic	-9572	NR_073177	100996455	Hs.634142	NR_073177	ENSG00000181908	LOC100996455	-	uncharacterized LOC100996455	ncRNA
19-PTNLD28-TUMOR_peak_74568	chr4	13893732	13894041	+	11.40978	NA	intron (NR_121681, intron 3 of 3)	intron (NR_121681, intron 3 of 3)	-219706	NR_033931	152742	Hs.135435	NR_033931	ENSG00000248698	LINC01085	-	long intergenic non-protein coding RNA 1085	ncRNA
19-PTNLD28-TUMOR_peak_63103	chr21	31901792	31901923	+	11.40978	NA	Intergenic	AluY|SINE|Alu	12324	NM_181612	337973	Hs.553695	NM_181612	HPRD:11210	KRTAP19-6	KAP19.6	keratin associated protein 19-6	protein-coding
19-PTNLD28-TUMOR_peak_92582	chr7	51906556	51906729	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	-522127	NM_001287436	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_4771	chr1	89948980	89949097	+	11.40978	NA	Intergenic	Intergenic	-41359	NM_001134476	23507	Hs.482017	NM_015350	HPRD:18145	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_102314	chr9	16626761	16627097	+	11.40978	NA	intron (NM_017637, intron 3 of 6)	intron (NM_017637, intron 3 of 6)	243857	NM_017637	54796	Hs.656581	NM_017637	HPRD:12274	BNC2	BSN2	basonuclin 2	protein-coding
19-PTNLD28-TUMOR_peak_32778	chr15	30107713	30107848	+	11.40978	NA	intron (NM_001301025, intron 2 of 28)	intron (NM_001301025, intron 2 of 28)	5971	NM_001301026	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109372	chrX	123540465	123540743	+	11.40978	NA	intron (NM_001163278, intron 25 of 31)	intron (NM_001163278, intron 25 of 31)	60472	NM_001114937	4068	Hs.349094	NM_002351	HPRD:02390	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_80288	chr5	65181893	65182048	+	11.40978	NA	Intergenic	MIRb|SINE|MIR	-40412	NM_001253701	55914	Hs.591774	NM_018695	HPRD:06090	ERBB2IP	ERBIN|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_69235	chr3	84774136	84774310	+	11.40978	NA	intron (NR_033860, intron 11 of 20)	MER44D|DNA|TcMar-Tigger	144503	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
19-PTNLD28-TUMOR_peak_23865	chr12	43604299	43604464	+	11.40978	NA	Intergenic	Intergenic	341343	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_77133	chr4	138916138	138916291	+	11.40978	NA	Intergenic	Intergenic	-93954	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108607	chrX	67930803	67930962	+	11.40978	NA	intron (NM_001142504, intron 1 of 13)	intron (NM_001142504, intron 1 of 13)	17400	NM_001142504	9754	Hs.95140	NM_014725	HPRD:06730	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR-related lipid transfer (START) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_54691	chr2	106535821	106535969	+	11.40978	NA	Intergenic	Intergenic	67691	NM_001004720	8440	Hs.529244	NM_003581	HPRD:05378	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_88724	chr6	90153498	90153652	+	11.40978	NA	intron (NM_001242813, intron 1 of 14)	intron (NM_001242813, intron 1 of 14)	10678	NM_001242809	22881	Hs.702213	NM_014942	HPRD:09798	ANKRD6	-	ankyrin repeat domain 6	protein-coding
19-PTNLD28-TUMOR_peak_13937	chr10	68389854	68389978	+	11.40978	NA	intron (NM_013266, intron 9 of 17)	L2b|LINE|L2	-295876	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_79796	chr5	49849405	49849677	+	11.40978	NA	Intergenic	LTR16C|LTR|ERVL	-112192	NM_001178055	79668	Hs.369581	NM_024615	HPRD:07960	PARP8	ARTD16|pART16	poly (ADP-ribose) polymerase family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_12499	chr10	25369960	25370196	+	11.40978	NA	Intergenic	Intergenic	-18870	NM_001270383	219670	Hs.534486	NM_145010	HPRD:12583	ENKUR	C10orf63|CFAP106	enkurin, TRPC channel interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_93688	chr7	81949200	81949366	+	11.40978	NA	intron (NM_000722, intron 3 of 38)	intron (NM_000722, intron 3 of 38)	123748	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_27753	chr13	32820663	32820766	+	11.40978	NA	intron (NM_023037, intron 47 of 60)	L2c|LINE|L2	65377	NM_001136571	646799	Hs.569254	NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1-like	protein-coding
19-PTNLD28-TUMOR_peak_23700	chr12	33013199	33013365	+	11.40978	NA	intron (NM_001005242, intron 4 of 12)	L1ME1|LINE|L1	36498	NM_004572	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_42868	chr17	62159645	62159794	+	11.40978	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	47783	NM_001433	2081	Hs.133982	NM_001433	HPRD:04943	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_45342	chr18	38390429	38390624	+	11.40978	NA	Intergenic	Intergenic	710035	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
19-PTNLD28-TUMOR_peak_38914	chr16	80231748	80231954	+	11.40978	NA	intron (NR_120307, intron 2 of 5)	MLT1I|LTR|ERVL-MaLR	-343003	NM_130897	83657	Hs.98849	NM_130897	HPRD:06204	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein, light chain, roadblock-type 2	protein-coding
19-PTNLD28-TUMOR_peak_11381	chr1	244229316	244229593	+	11.40978	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	12947	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_89695	chr6	139870949	139871171	+	11.40978	NA	Intergenic	Intergenic	-75327	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	ncRNA
19-PTNLD28-TUMOR_peak_17715	chr11	27122137	27122379	+	11.40978	NA	intron (NM_003986, intron 5 of 8)	intron (NM_003986, intron 5 of 8)	59749	NM_003986	8424	Hs.591996	NM_003986	HPRD:04498	BBOX1	BBH|BBOX|G-BBH|gamma-BBH	butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1	protein-coding
19-PTNLD28-TUMOR_peak_65241	chr22	34199454	34199631	+	11.40978	NA	intron (NM_133642, intron 1 of 14)	MER68|LTR|ERVL	78570	NR_038950	100506195	Hs.658872	NR_038949	ENSG00000224973	LARGE-AS1	-	LARGE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48679	chr19	35953501	35953720	+	11.40978	NA	Intergenic	Intergenic	12993	NM_005306	2867	Hs.248056	NM_005306	HPRD:04824	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_98400	chr8	41461818	41461986	+	11.40978	NA	intron (NM_178819, intron 2 of 12)	intron (NM_178819, intron 2 of 12)	26195	NM_178819	137964	Hs.355753	NM_178819	HPRD:12175	AGPAT6	1-AGPAT 6|LPAAT-zeta|LPAATZ|TSARG7	1-acylglycerol-3-phosphate O-acyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_71554	chr3	148097665	148097806	+	11.40978	NA	Intergenic	Intergenic	-317923	NM_009585	185	Hs.477887	NM_000685	HPRD:00107	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_77609	chr4	152718448	152718617	+	11.40978	NA	Intergenic	Intergenic	-36357	NM_004564	5188	Hs.119316	NM_004564	HPRD:04706	GATB	PET112|PET112L	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_73260	chr3	192185189	192185308	+	11.40978	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	-58410	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_75812	chr4	77942933	77943146	+	11.40978	NA	intron (NM_018243, intron 7 of 9)	intron (NM_018243, intron 7 of 9)	54086	NM_006835	10983	Hs.518827	NM_006835	HPRD:16690	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
19-PTNLD28-TUMOR_peak_11368	chr1	244006551	244006727	+	11.40978	NA	promoter-TSS (NM_005465)	promoter-TSS (NM_005465)	-55	NM_005465	10000	Hs.498292	NM_005465	HPRD:06441	AKT3	MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	v-akt murine thymoma viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_91530	chr7	21543750	21543914	+	11.40978	NA	intron (NM_003112, intron 5 of 5)	HERVP71A-int|LTR|ERV1	-39001	NM_001277115	8701	Hs.520245	NM_001277115	HPRD:09134	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein, axonemal, heavy chain 11	protein-coding
19-PTNLD28-TUMOR_peak_3887	chr1	60358621	60358840	+	11.40978	NA	TTS (NM_000775)	TTS (NM_000775)	33693	NM_000775	1573	Hs.152096	NM_000775	HPRD:03159	CYP2J2	CPJ2	cytochrome P450, family 2, subfamily J, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_82797	chr5	141559661	141559840	+	11.40978	NA	Intergenic	Intergenic	71426	NM_030571	80762	Hs.9788	NM_030571	HPRD:14816	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68539	chr3	57359099	57359201	+	11.40978	NA	intron (NM_001291661, intron 46 of 57)	L1PA3|LINE|L1	-32440	NM_001142733	142686	Hs.665154	NM_130387	HPRD:10668	ASB14	-	ankyrin repeat and SOCS box containing 14	protein-coding
19-PTNLD28-TUMOR_peak_12639	chr10	29409302	29409398	+	11.40978	NA	Intergenic	Intergenic	-168640	NM_032517	84569	Hs.558572	NM_032517	HPRD:14336	LYZL1	KAAG648|LYC2|PRO1278|bA534G20.1	lysozyme-like 1	protein-coding
19-PTNLD28-TUMOR_peak_104107	chr9	84281171	84281324	+	11.40978	NA	intron (NM_005077, intron 4 of 19)	intron (NM_005077, intron 4 of 19)	22349	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_29003	chr13	109168633	109168807	+	11.40978	NA	Intergenic	L1HS|LINE|L1	-79780	NM_015011	23026	Hs.656587	NM_015011	HPRD:14795	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
19-PTNLD28-TUMOR_peak_24825	chr12	58452841	58452965	+	11.40978	NA	Intergenic	L1PA3|LINE|L1	117458	NM_033276	91419	Hs.61188	NM_033276	HPRD:17256	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_107351	chrX	1821491	1821622	+	11.40978	NA	Intergenic	Intergenic	87530	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_57032	chr2	174688291	174688470	+	11.40978	NA	Intergenic	Intergenic	140567	NM_001017371	6670	Hs.531587	NM_003111	HPRD:03483	SP3	SPR2	Sp3 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_105678	chr9	118646093	118646267	+	11.40978	NA	Intergenic	Intergenic	41197	NR_024032	58483	Hs.23367	NM_021208		LINC00474	C9orf27|EST-YD1	long intergenic non-protein coding RNA 474	ncRNA
19-PTNLD28-TUMOR_peak_40927	chr17	29465553	29465735	+	11.40978	NA	intron (NM_001128147, intron 1 of 14)	AluY|SINE|Alu	43699	NM_001128147	4763	Hs.113577	NM_000267	HPRD:01203	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
19-PTNLD28-TUMOR_peak_46267	chr18	72608508	72608643	+	11.40978	NA	intron (NM_017757, intron 6 of 7)	intron (NM_017757, intron 6 of 7)	265656	NM_001146189	55628	Hs.536490	NM_017757	HPRD:11713	ZNF407	-	zinc finger protein 407	protein-coding
19-PTNLD28-TUMOR_peak_27102	chr12	127593309	127593475	+	11.40978	NA	Intergenic	LTR55|LTR|ERV	-48450	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_108090	chrX	44833833	44833952	+	11.40978	NA	intron (NR_111960, intron 3 of 27)	intron (NR_111960, intron 3 of 27)	101471	NM_021140	7403	Hs.522616	NM_021140	HPRD:02131	KDM6A	KABUK2|UTX|bA386N14.2	lysine (K)-specific demethylase 6A	protein-coding
19-PTNLD28-TUMOR_peak_55892	chr2	134924778	134924908	+	11.40978	NA	Intergenic	Intergenic	40147	NR_037450	100500878		NR_037450	miRBase:MI0016080	MIR3679	-	microRNA 3679	ncRNA
19-PTNLD28-TUMOR_peak_82957	chr5	145381208	145381350	+	11.40978	NA	intron (NM_152550, intron 3 of 9)	L2c|LINE|L2	65153	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_12890	chr10	34608581	34608735	+	11.40978	NA	intron (NM_001184791, intron 16 of 20)	intron (NM_001184791, intron 16 of 20)	495595	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_69221	chr3	82105083	82105191	+	11.40978	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-294187	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_28264	chr13	51644276	51644470	+	11.40978	NA	Intergenic	Intergenic	-4080	NR_003923	2974	Hs.411573	NM_004129	HPRD:07542	GUCY1B2	GC-SB2	guanylate cyclase 1, soluble, beta 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_51382	chr2	18952585	18952753	+	11.40978	NA	Intergenic	Intergenic	-181823	NM_001199088	93034	Hs.744358	NM_033253	HPRD:11405	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
19-PTNLD28-TUMOR_peak_82907	chr5	143204820	143204936	+	11.40978	NA	Intergenic	Intergenic	13152	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_81048	chr5	86836993	86837142	+	11.40978	NA	Intergenic	Intergenic	-128217	NM_001239	902	Hs.292524	NM_001239	HPRD:09059	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
19-PTNLD28-TUMOR_peak_76284	chr4	94104026	94104143	+	11.40978	NA	intron (NM_001510, intron 4 of 15)	MER5A|DNA|hAT-Charlie	-645994	NM_005172	474	Hs.532680	NM_005172	HPRD:03270	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_27490	chr13	24782548	24782681	+	11.40978	NA	intron (NM_153023, intron 1 of 11)	intron (NM_153023, intron 1 of 11)	45963	NR_046531	100874231	Hs.577998	NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103819	chr9	74895968	74896112	+	11.40978	NA	Intergenic	Intergenic	-24312	NR_110953	100507540	Hs.54957	NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
19-PTNLD28-TUMOR_peak_27844	chr13	36936558	36936680	+	11.40978	NA	intron (NR_045180, intron 2 of 5)	intron (NR_045180, intron 2 of 5)	7698	NM_001142294	23111	Hs.440414	NM_015087	HPRD:06170	SPG20	SPARTIN|TAHCCP1	spastic paraplegia 20 (Troyer syndrome)	protein-coding
19-PTNLD28-TUMOR_peak_15506	chr10	106377554	106377810	+	11.40978	NA	Intergenic	MamRep605|Unknown|Unknown	-23177	NM_014978	22986	Hs.671950	NM_014978	HPRD:12100	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_56772	chr2	166162351	166162515	+	11.40978	NA	intron (NM_001040143, intron 2 of 25)	L2b|LINE|L2	10150	NM_001040143	6326	Hs.93485	NM_021007	HPRD:03133	SCN2A	BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2	sodium channel, voltage-gated, type II, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_28935	chr13	105848523	105848641	+	11.40978	NA	Intergenic	MER66C|LTR|ERV1	-269634	NM_001161814	267012	Hs.381382	NM_172370	HPRD:07591	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
19-PTNLD28-TUMOR_peak_16888	chr11	6715245	6715425	+	11.40978	NA	Intergenic	LTR8|LTR|ERV1	-10703	NM_022061	63875	Hs.523456	NM_022061	HPRD:10096	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26	mitochondrial ribosomal protein L17	protein-coding
19-PTNLD28-TUMOR_peak_35481	chr15	100785027	100785373	+	11.40978	NA	intron (NM_139057, intron 7 of 21)	intron (NM_139057, intron 7 of 21)	96983	NM_139057	170691	Hs.513200	NM_139057	HPRD:06332	ADAMTS17	-	ADAM metallopeptidase with thrombospondin type 1 motif, 17	protein-coding
19-PTNLD28-TUMOR_peak_98900	chr8	58425358	58425456	+	11.40978	NA	Intergenic	Tigger12A|DNA|TcMar-Tigger	233305	NR_026772	26138	Hs.159352	NM_015643	ENSG00000215117	LINC00588	C8orf71	long intergenic non-protein coding RNA 588	ncRNA
19-PTNLD28-TUMOR_peak_38199	chr16	65707025	65707191	+	11.40978	NA	Intergenic	Intergenic	-96905	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	-	long intergenic non-protein coding RNA 922	ncRNA
19-PTNLD28-TUMOR_peak_89440	chr6	130069592	130069732	+	11.40978	NA	Intergenic	Intergenic	-38292	NM_033515	93663	Hs.486458	NM_033515	HPRD:12474	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
19-PTNLD28-TUMOR_peak_26461	chr12	116784660	116784817	+	11.40978	NA	Intergenic	L1ME4a|LINE|L1	-69747	NM_015335	23389	Hs.603766	NM_015335	HPRD:10579	MED13L	PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13-like	protein-coding
19-PTNLD28-TUMOR_peak_3789	chr1	58628776	58628887	+	11.40978	NA	intron (NM_021080, intron 1 of 16)	LTR50|LTR|ERVL	87380	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_15876	chr10	119436929	119437076	+	11.40978	NA	Intergenic	Intergenic	-132423	NR_002791	196047	Hs.312592	NR_002791		EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_1691	chr1	26837348	26837461	+	11.40978	NA	Intergenic	AluJo|SINE|Alu	-18845	NM_002953	6195	Hs.149957	NM_002953	HPRD:03402	RPS6KA1	HU-1|MAPKAPK1A|RSK|RSK1	ribosomal protein S6 kinase, 90kDa, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_23674	chr12	32443438	32443555	+	11.40978	NA	intron (NM_001003398, intron 2 of 8)	MER31B|LTR|ERV1	183311	NM_001714	636	Hs.505202	NM_001714	HPRD:03730	BICD1	BICD	bicaudal D homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_98831	chr8	55786883	55787038	+	11.40978	NA	Intergenic	AluSq|SINE|Alu	-228057	NM_052898	114786	Hs.130197	NM_052898		XKR4	XRG4	XK, Kell blood group complex subunit-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_44811	chr18	19880798	19880938	+	11.40978	NA	Intergenic	AluSz|SINE|Alu	117010	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_79493	chr5	36265678	36265802	+	11.40978	NA	intron (NM_145000, intron 4 of 13)	intron (NM_145000, intron 4 of 13)	-23359	NM_153013	133686	Hs.81907	NM_153013	HPRD:08088	NADK2	C5orf33|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_108327	chrX	50571116	50571304	+	11.40978	NA	Intergenic	L2c|LINE|L2	-14166	NM_020717	57477	Hs.420541	NM_020717	HPRD:17209	SHROOM4	SHAP	shroom family member 4	protein-coding
19-PTNLD28-TUMOR_peak_25466	chr12	81897209	81897309	+	11.40978	NA	intron (NM_001220474, intron 2 of 30)	intron (NM_001220474, intron 2 of 30)	8911	NM_001282536	8499	Hs.506216	NM_003625	HPRD:04392	PPFIA2	-	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_68550	chr3	57661386	57661618	+	11.40978	NA	intron (NM_152678, intron 1 of 19)	intron (NM_152678, intron 1 of 19)	17314	NM_152678	201627	Hs.91085	NM_152678	HPRD:08756	DENND6A	AFI1A|FAM116A	DENN/MADD domain containing 6A	protein-coding
19-PTNLD28-TUMOR_peak_20889	chr11	102906792	102907002	+	11.40978	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	56047	NM_032299	84259	Hs.503716	NM_032299	HPRD:14520	DCUN1D5	-	DCN1, defective in cullin neddylation 1, domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_15646	chr10	113076525	113076643	+	11.40978	NA	Intergenic	Intergenic	239794	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_44995	chr18	24016196	24016418	+	11.40978	NA	intron (NR_110762, intron 3 of 3)	L2c|LINE|L2	13348	NR_110762	100506787	Hs.734746	NR_110762		LOC100506787	-	uncharacterized LOC100506787	ncRNA
19-PTNLD28-TUMOR_peak_34804	chr15	81384630	81384801	+	11.40978	NA	Intergenic	Intergenic	-41929	NM_173528	161502	Hs.130979	NM_173528	HPRD:08243	C15orf26	-	chromosome 15 open reading frame 26	protein-coding
19-PTNLD28-TUMOR_peak_83435	chr5	155370973	155371094	+	11.40978	NA	Intergenic	L3|LINE|CR1	-382734	NM_172244	6444	Hs.387207	NM_000337	HPRD:03246	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_22301	chr11	134009849	134009983	+	11.40978	NA	intron (NM_001205329, intron 2 of 7)	intron (NM_001205329, intron 2 of 7)	71096	NM_032801	83700	Hs.150718	NM_032801	HPRD:06042	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
19-PTNLD28-TUMOR_peak_59916	chr20	15634856	15635024	+	11.40978	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	457436	NM_001033087	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83029	chr5	147007770	147007869	+	11.40978	NA	intron (NM_001282282, intron 15 of 20)	intron (NM_001282282, intron 15 of 20)	68262	NR_038902	153469	Hs.184323	NR_038902		JAKMIP2-AS1	-	JAKMIP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100526	chr8	124465859	124465993	+	11.40978	NA	Intergenic	AluSq2|SINE|Alu	36961	NM_001283027	55093	Hs.18029	NM_018024	HPRD:07653	WDYHV1	C8orf32	WDYHV motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_82335	chr5	135223180	135223324	+	11.40978	NA	intron (NM_145282, intron 4 of 4)	intron (NM_145282, intron 4 of 4)	8264	NM_000590	3578	Hs.960	NM_000590	HPRD:00910	IL9	HP40|IL-9|P40	interleukin 9	protein-coding
19-PTNLD28-TUMOR_peak_94043	chr7	95353044	95353151	+	11.40978	NA	Intergenic	Intergenic	-48721	NM_001278421	1780	Hs.440364	NM_004411	HPRD:04798	DYNC1I1	DNCI1|DNCIC1	dynein, cytoplasmic 1, intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_68161	chr3	49840571	49840797	+	11.40846	NA	promoter-TSS (NM_203370)	promoter-TSS (NM_203370)	-3	NM_203370	389119	Hs.86674	NM_203370	HPRD:14210	FAM212A	C3orf54|INKA1	family with sequence similarity 212, member A	protein-coding
19-PTNLD28-TUMOR_peak_980	chr1	15479497	15479794	+	11.40846	NA	promoter-TSS (NM_001136218)	promoter-TSS (NM_001136218)	-584	NM_018022	55092	Hs.465305	NM_018022	HPRD:07651	TMEM51	C1orf72	transmembrane protein 51	protein-coding
19-PTNLD28-TUMOR_peak_73931	chr4	2800524	2800727	+	11.40567	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	5875	NM_001122681	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_63522	chr21	39991563	39991730	+	11.40381	NA	intron (NR_111949, intron 1 of 4)	intron (NR_111949, intron 1 of 4)	-34777	NM_001243429	2078	Hs.473819	NM_004449	HPRD:01298	ERG	erg-3|p55	v-ets avian erythroblastosis virus E26 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_11523	chr1	247494541	247494699	+	11.40381	NA	intron (NM_032752, intron 1 of 8)	CpG	425	NM_032752	84838	Hs.654803	NM_032752	HPRD:15805	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
19-PTNLD28-TUMOR_peak_60881	chr20	36036054	36036411	+	11.40012	NA	Intergenic	Intergenic	61701	NM_198291	6714	Hs.195659	NM_005417	HPRD:01819	SRC	ASV|SRC1|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_40379	chr17	17400167	17400402	+	11.40012	NA	promoter-TSS (NM_016084)	promoter-TSS (NM_016084)	-575	NM_001199989	51655	Hs.25829	NM_016084	HPRD:08958	RASD1	AGS1|DEXRAS1|MGC:26290	RAS, dexamethasone-induced 1	protein-coding
19-PTNLD28-TUMOR_peak_37613	chr16	46722490	46722686	+	11.39793	NA	promoter-TSS (NM_014321)	promoter-TSS (NM_014321)	556	NM_018206	55737	Hs.454528	NM_018206		VPS35	MEM3|PARK17	vacuolar protein sorting 35 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_6599	chr1	149446687	149446810	+	11.39715	NA	Intergenic	Intergenic	67508	NR_104086	101954277		NR_104086		RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
19-PTNLD28-TUMOR_peak_71864	chr3	155463601	155463861	+	11.39671	NA	Intergenic	Intergenic	-41734	NM_014996	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_21418	chr11	117068832	117068996	+	11.39601	NA	TTS (NM_001040455)	TTS (NM_001040455)	-1126	NM_003186	6876	Hs.410977	NM_003186	HPRD:02891	TAGLN	SM22|SMCC|TAGLN1|WS3-10	transgelin	protein-coding
19-PTNLD28-TUMOR_peak_9703	chr1	206223702	206224151	+	11.39601	NA	promoter-TSS (NM_000707)	promoter-TSS (NM_000707)	-357	NM_000707	553	Hs.1372	NM_000707		AVPR1B	AVPR3	arginine vasopressin receptor 1B	protein-coding
19-PTNLD28-TUMOR_peak_106833	chr9	140121887	140122230	+	11.39601	NA	promoter-TSS (NM_001190228)	promoter-TSS (NM_001190228)	40	NM_001190228	643596	Hs.730186	NM_001190228	ENSG00000233198	RNF224	-	ring finger protein 224	protein-coding
19-PTNLD28-TUMOR_peak_96001	chr7	142606796	142607004	+	11.39399	NA	intron (NM_019841, intron 13 of 14)	intron (NM_019841, intron 13 of 14)	-23410	NM_018646	55503	Hs.302740	NM_014274	HPRD:05982	TRPV6	ABP/ZF|CAT1|CATL|ECAC2|HSA277909|LP6728|ZFAB	transient receptor potential cation channel, subfamily V, member 6	protein-coding
19-PTNLD28-TUMOR_peak_26289	chr12	111023451	111023585	+	11.39349	NA	Intergenic	Intergenic	-2454	NM_139283	160760	Hs.13854	NM_139283		PPTC7	TA-PP2C|TAPP2C	PTC7 protein phosphatase homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_47490	chr19	13145028	13145352	+	11.39349	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	9795	NM_001271043	4784	Hs.257970	NM_002501	HPRD:01234	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_105168	chr9	109678851	109679055	+	11.39349	NA	intron (NR_031752, intron 2 of 3)	intron (NR_031752, intron 2 of 3)	53575	NM_021224	58499	Hs.370379	NM_021224	HPRD:10333	ZNF462	Zfp462	zinc finger protein 462	protein-coding
19-PTNLD28-TUMOR_peak_49158	chr19	41804259	41804463	+	11.38810	NA	intron (NM_007040, intron 10 of 14)	intron (NM_007040, intron 10 of 14)	-11733	NM_052848	90324	Hs.437497	NM_052848	HPRD:14467	CCDC97	-	coiled-coil domain containing 97	protein-coding
19-PTNLD28-TUMOR_peak_84159	chr5	174256528	174256858	+	11.38810	NA	Intergenic	MER77B|LTR|ERVL	77956	NR_039777	100616202		NR_039777	miRBase:MI0017261	MIR4634	-	microRNA 4634	ncRNA
19-PTNLD28-TUMOR_peak_7999	chr1	167721840	167721989	+	11.38810	NA	intron (NM_024569, intron 1 of 4)	intron (NM_024569, intron 1 of 4)	30727	NM_001146191	9019	Hs.493919	NM_003953	HPRD:05086	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
19-PTNLD28-TUMOR_peak_70168	chr3	122512463	122512787	+	11.38801	NA	promoter-TSS (NM_024610)	promoter-TSS (NM_024610)	41	NM_024610	79663	Hs.29169	NM_024610	HPRD:12197	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100373	chr8	120886376	120886512	+	11.38801	NA	intron (NM_001283012, intron 1 of 6)	CpG	549	NM_022783	64798	Hs.112981	NM_022783	HPRD:13137	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_11925	chr10	7602557	7602782	+	11.38701	NA	3' UTR (NM_030569, exon 15 of 15)	3' UTR (NM_030569, exon 15 of 15)	58967	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_57924	chr2	204672893	204673044	+	11.38701	NA	Intergenic	Intergenic	-59543	NM_001037631	1493	Hs.247824	NM_005214	HPRD:00474	CTLA4	CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_45464	chr18	43417636	43417809	+	11.38701	NA	exon (NM_213602, exon 3 of 6)	exon (NM_213602, exon 3 of 6)	12177	NM_213602	284266	Hs.287692	NM_213602	HPRD:13011	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig-like lectin 15	protein-coding
19-PTNLD28-TUMOR_peak_87283	chr6	39069890	39070049	+	11.38118	NA	Intergenic	Intergenic	12896	NM_018322	55776	Hs.58382	NM_018322	HPRD:12892	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_65840	chr22	44341838	44342041	+	11.38118	NA	intron (NM_025225, intron 8 of 8)	intron (NM_025225, intron 8 of 8)	-9322	NM_015380	25813	Hs.505824	NM_015380	HPRD:10826	SAMM50	OMP85|SAM50|TOB55|TRG-3|YNL026W	SAMM50 sorting and assembly machinery component	protein-coding
19-PTNLD28-TUMOR_peak_84674	chr6	913221	913337	+	11.38118	NA	Intergenic	Intergenic	44781	NR_110853	101927691	Hs.552556	NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
19-PTNLD28-TUMOR_peak_24805	chr12	58204431	58204592	+	11.38118	NA	intron (NM_006576, intron 5 of 18)	intron (NM_006576, intron 5 of 18)	5341	NM_006576	10677	Hs.584854	NM_006576	HPRD:09816	AVIL	ADVIL|DOC6|p92	advillin	protein-coding
19-PTNLD28-TUMOR_peak_87204	chr6	37452103	37452235	+	11.38118	NA	intron (NM_138493, intron 3 of 3)	intron (NM_138493, intron 3 of 3)	15531	NM_138493	154467	Hs.284207	NM_138493	HPRD:18561	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
19-PTNLD28-TUMOR_peak_95187	chr7	128919748	128919890	+	11.38118	NA	intron (NM_001130720, intron 1 of 16)	MER41B|LTR|ERV1	54964	NM_015328	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_92347	chr7	45194297	45194448	+	11.38118	NA	Intergenic	Intergenic	-2995	NM_005856	10268	Hs.25691	NM_005856	HPRD:05517	RAMP3	-	receptor (G protein-coupled) activity modifying protein 3	protein-coding
19-PTNLD28-TUMOR_peak_1150	chr1	17423621	17423905	+	11.38118	NA	intron (NM_007365, intron 3 of 15)	intron (NM_007365, intron 3 of 15)	22185	NM_007365	11240	Hs.33455	NM_007365	HPRD:06396	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase, type II	protein-coding
19-PTNLD28-TUMOR_peak_48623	chr19	35183228	35183743	+	11.38118	NA	Intergenic	AluJr|SINE|Alu	14941	NM_001289184	55900	Hs.436350	NM_018443	HPRD:15765	ZNF302	HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327	zinc finger protein 302	protein-coding
19-PTNLD28-TUMOR_peak_73957	chr4	3258887	3259081	+	11.38118	NA	TTS (NM_001042690)	TTS (NM_001042690)	8217	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_65745	chr22	42915141	42915391	+	11.38118	NA	intron (NM_015703, intron 1 of 6)	L2c|LINE|L2	563	NM_015703	27341	Hs.745006	NM_015703		RRP7A	BK126B4.3|CGI-96	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_107939	chrX	37858256	37858413	+	11.38118	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-7501	NM_001163335	94122	Hs.662334	NM_138780	HPRD:06736	SYTL5	slp5	synaptotagmin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_87979	chr6	52735629	52735747	+	11.38118	NA	Intergenic	Intergenic	-24795	NM_153699	221357	Hs.646984	NM_153699	HPRD:09620	GSTA5	-	glutathione S-transferase alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_21787	chr11	123118039	123118170	+	11.38118	NA	Intergenic	Intergenic	-52097	NM_024769	79827	Hs.591949	NM_024769	HPRD:16513	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR-like membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_81040	chr5	86417201	86417336	+	11.38118	NA	intron (NR_105018, intron 1 of 3)	intron (NR_105018, intron 1 of 3)	1303	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
19-PTNLD28-TUMOR_peak_95683	chr7	137924071	137924235	+	11.38118	NA	Intergenic	LTR8A|LTR|ERV1	115649	NR_039678	100616226		NR_039678	miRBase:MI0016819	MIR4468	-	microRNA 4468	ncRNA
19-PTNLD28-TUMOR_peak_69786	chr3	111904610	111904830	+	11.37889	NA	intron (NM_183061, intron 20 of 28)	CpG	-52568	NM_001190259	257144	Hs.49614	NM_152785	HPRD:09695	GCSAM	GCAT2|GCET2|HGAL	germinal center-associated, signaling and motility	protein-coding
19-PTNLD28-TUMOR_peak_76732	chr4	118058410	118058607	+	11.37889	NA	Intergenic	AluJr|SINE|Alu	-51772	NM_152402	133022	Hs.570737	NM_152402	HPRD:11643	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_55013	chr2	113251580	113251748	+	11.37889	NA	intron (NM_153712, intron 2 of 6)	intron (NM_153712, intron 2 of 6)	11921	NM_153712	150465	Hs.358997	NM_153712		TTL	-	tubulin tyrosine ligase	protein-coding
19-PTNLD28-TUMOR_peak_17582	chr11	19575385	19575541	+	11.37889	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	-21394	NR_039706	100616118		NR_039706		MIR4486	-	microRNA 4486	ncRNA
19-PTNLD28-TUMOR_peak_30513	chr14	58026254	58026736	+	11.37889	NA	Intergenic	Intergenic	-65914	NM_001283058	55195	Hs.659706	NM_018168	HPRD:12628	C14orf105	-	chromosome 14 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_24616	chr12	56017882	56018076	+	11.37889	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-12697	NM_206899	121130	Hs.554551	NM_206899	HPRD:14895	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor, family 10, subfamily P, member 1	protein-coding
19-PTNLD28-TUMOR_peak_44170	chr17_gl000204_random	53989	54143	+	11.37889	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_5377	chr1	109925838	109925975	+	11.37889	NA	intron (NM_002959, intron 1 of 19)	intron (NM_002959, intron 1 of 19)	10073	NM_001205228	6272	Hs.485195	NM_002959	HPRD:03910	SORT1	Gp95|LDLCQ6|NT3	sortilin 1	protein-coding
19-PTNLD28-TUMOR_peak_58787	chr2	231689351	231689519	+	11.37889	NA	Intergenic	Intergenic	-39878	NM_001287241	81618	Hs.111577	NM_030926	HPRD:17167	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
19-PTNLD28-TUMOR_peak_67890	chr3	45834992	45835184	+	11.37889	NA	intron (NM_022405, intron 1 of 9)	intron (NM_022405, intron 1 of 9)	2947	NM_022405	54716	Hs.413095	NM_020208	HPRD:16128	SLC6A20	SIT1|XT3|Xtrp3	solute carrier family 6 (proline IMINO transporter), member 20	protein-coding
19-PTNLD28-TUMOR_peak_56136	chr2	144694713	144694980	+	11.37889	NA	non-coding (NR_110237, exon 1 of 3)	non-coding (NR_110237, exon 1 of 3)	212	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
19-PTNLD28-TUMOR_peak_104232	chr9	87388054	87388230	+	11.37889	NA	intron (NM_001018064, intron 11 of 16)	intron (NM_001018064, intron 11 of 16)	102850	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_62928	chr21	22074252	22074398	+	11.37889	NA	Intergenic	AluY|SINE|Alu	101101	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	ncRNA
19-PTNLD28-TUMOR_peak_107701	chrX	18122484	18122957	+	11.37889	NA	Intergenic	L1PA2|LINE|L1	116304	NM_153346	139105	Hs.403802	NM_153346	HPRD:06646	BEND2	CXorf20	BEN domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102179	chr9	12334039	12334499	+	11.37889	NA	Intergenic	L1PA3|LINE|L1	-359117	NM_000550	7306	Hs.270279	NM_000550	HPRD:00283	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61249	chr20	43223435	43223660	+	11.37889	NA	intron (NM_007066, intron 2 of 3)	intron (NM_007066, intron 2 of 3)	12357	NM_001281445	11142	Hs.472831	NM_007066	HPRD:05379	PKIG	PKI-gamma	protein kinase (cAMP-dependent, catalytic) inhibitor gamma	protein-coding
19-PTNLD28-TUMOR_peak_95563	chr7	135329997	135330299	+	11.37889	NA	intron (NM_015135, intron 40 of 42)	intron (NM_015135, intron 40 of 42)	-17073	NM_001130929	647087	Hs.200022	NM_001130929		C7orf73	PL-5283	chromosome 7 open reading frame 73	protein-coding
19-PTNLD28-TUMOR_peak_48370	chr19	28924223	28924364	+	11.37889	NA	Intergenic	HERVH-int|LTR|ERV1	294308	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_18366	chr11	45907197	45907451	+	11.37889	NA	5' UTR (NM_005456, exon 1 of 12)	5' UTR (NM_005456, exon 1 of 12)	277	NM_005456	9479	Hs.234249	NM_005456	HPRD:05223	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_4049	chr1	64157696	64157852	+	11.37889	NA	Intergenic	Intergenic	68887	NM_001172818	5236	Hs.1869	NM_002633	HPRD:01389	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
19-PTNLD28-TUMOR_peak_106798	chr9	139887111	139887257	+	11.37889	NA	intron (NM_183241, intron 2 of 6)	intron (NM_183241, intron 2 of 6)	314	NM_183241	286257	Hs.409582	NM_183241	HPRD:14163	C9orf142	-	chromosome 9 open reading frame 142	protein-coding
19-PTNLD28-TUMOR_peak_79312	chr5	31854363	31854755	+	11.37875	NA	intron (NM_178140, intron 1 of 23)	intron (NM_178140, intron 1 of 23)	55528	NM_178140	23037	Hs.481819	NM_015022	HPRD:10142	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_3870	chr1	59965005	59965130	+	11.37875	NA	intron (NM_001113411, intron 6 of 16)	MER44B|DNA|TcMar-Tigger	-16234	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_73182	chr3	190064461	190064696	+	11.37844	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-24343	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_61438	chr20	45039667	45039783	+	11.37732	NA	Intergenic	Intergenic	-4454	NM_133171	63916	Hs.210469	NM_022086	HPRD:12103	ELMO2	CED-12|CED12|ELMO-2	engulfment and cell motility 2	protein-coding
19-PTNLD28-TUMOR_peak_54427	chr2	99391657	99392121	+	11.37151	NA	Intergenic	Intergenic	-44300	NM_012214	11320	Hs.177576	NM_012214	HPRD:06860	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	protein-coding
19-PTNLD28-TUMOR_peak_43753	chr17	76388050	76388233	+	11.37151	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	13442	NM_024419	9489	Hs.654671	NM_024419	HPRD:17841	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_91475	chr7	20198105	20198553	+	11.37022	NA	exon (NM_182762, exon 5 of 7)	exon (NM_182762, exon 5 of 7)	16790	NR_046756	100874041	Hs.145104	NR_046756	ENSG00000228598	MACC1-AS1	-	MACC1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28804	chr13	99310505	99310681	+	11.37022	NA	Intergenic	Intergenic	-81188	NM_001286649	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_28678	chr13	93880159	93880535	+	11.37022	NA	intron (NM_005708, intron 1 of 8)	CpG	1269	NM_005708	10082	Hs.444329	NM_005708	HPRD:05099	GPC6	OMIMD1	glypican 6	protein-coding
19-PTNLD28-TUMOR_peak_86685	chr6	31920160	31920407	+	11.37022	NA	TTS (NM_001710).4	TTS (NM_001710).4	4434	NR_031601	100302242		NR_031601		MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
19-PTNLD28-TUMOR_peak_41643	chr17	41669583	41669850	+	11.37022	NA	Intergenic	Intergenic	-45916	NM_001079675	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_66725	chr3	13319526	13319693	+	11.37022	NA	Intergenic	Intergenic	142210	NM_024923	23225	Hs.475525	NM_024923	HPRD:06368	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
19-PTNLD28-TUMOR_peak_31980	chr14	99453712	99453924	+	11.37022	NA	Intergenic	HERVH-int|LTR|ERV1	275868	NM_182560	283598	Hs.448754	NM_182560	HPRD:08075	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_29229	chr13	115000687	115000917	+	11.37022	NA	intron (NM_001078645, intron 1 of 17)	CpG	440	NM_001078645	8881	Hs.374127	NM_003903	HPRD:04587	CDC16	ANAPC6|APC6|CUT9	cell division cycle 16	protein-coding
19-PTNLD28-TUMOR_peak_89349	chr6	125474807	125474986	+	11.37022	NA	promoter-TSS (NM_003287)	promoter-TSS (NM_003287)	17	NM_003287	7164	Hs.591347	NM_003287	HPRD:07236	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
19-PTNLD28-TUMOR_peak_52206	chr2	38472283	38472844	+	11.37022	NA	Intergenic	MER66A|LTR|ERV1	114316	NR_027252	285154	Hs.353894	NM_173652	HPRD:14592	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52383	chr2	43232730	43233092	+	11.37022	NA	Intergenic	Intergenic	33771	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_74931	chr4	37668373	37668580	+	11.36913	NA	intron (NM_001085400, intron 1 of 6)	intron (NM_001085400, intron 1 of 6)	19523	NM_001085399	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT-like 1	protein-coding
19-PTNLD28-TUMOR_peak_10041	chr1	214725742	214725922	+	11.36913	NA	promoter-TSS (NM_005401)	promoter-TSS (NM_005401)	-808	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_80368	chr5	67114199	67114392	+	11.36913	NA	Intergenic	L1PA3|LINE|L1	-371409	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_26733	chr12	121714961	121715080	+	11.36913	NA	intron (NM_153500, intron 1 of 14)	intron (NM_153500, intron 1 of 14)	-2632	NM_001270486	10645	Hs.297343	NM_006549	HPRD:06467	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding
19-PTNLD28-TUMOR_peak_91670	chr7	25007855	25008070	+	11.36913	NA	intron (NM_015550, intron 1 of 22)	MER63A|DNA|hAT-Blackjack	11869	NM_015550	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_16698	chr11	2961883	2962091	+	11.36913	NA	Intergenic	Intergenic	-11337	NM_003311	7262	Hs.154036	NM_003311	HPRD:03679	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology-like domain, family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_18658	chr11	57336907	57337095	+	11.36913	NA	Intergenic	L2c|LINE|L2	-1198	NM_198183	9246	Hs.425777	NM_004223	HPRD:04867	UBE2L6	RIG-B|UBCH8	ubiquitin-conjugating enzyme E2L 6	protein-coding
19-PTNLD28-TUMOR_peak_86405	chr6	29794203	29794308	+	11.36913	NA	promoter-TSS (NM_002127).2	promoter-TSS (NM_002127).2	-501	NM_002127	3135	Hs.512152	NM_002127	HPRD:00834	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
19-PTNLD28-TUMOR_peak_20281	chr11	78827693	78827883	+	11.36827	NA	intron (NM_001098816, intron 4 of 33)	MIRb|SINE|MIR	285365	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_25055	chr12	66269683	66269786	+	11.36827	NA	intron (NR_120478, intron 2 of 2)	intron (NR_120478, intron 2 of 2)	5624	NR_120478	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
19-PTNLD28-TUMOR_peak_138	chr1	1268028	1268407	+	11.36827	NA	intron (NM_152228, intron 3 of 5)	CpG	1491	NM_152228	83756	Hs.74375	NM_152228		TAS1R3	T1R3	taste receptor, type 1, member 3	protein-coding
19-PTNLD28-TUMOR_peak_48577	chr19	34396904	34397087	+	11.36827	NA	Intergenic	CpG	109244	NM_024076	79047	Hs.221873	NM_024076	HPRD:13765	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_48683	chr19	36000881	36001001	+	11.36649	NA	intron (NM_001126057, intron 6 of 10)	intron (NM_001126057, intron 6 of 10)	450	NM_001126059	93099	Hs.417795	NM_033317	HPRD:12387	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
19-PTNLD28-TUMOR_peak_19255	chr11	65183949	65184064	+	11.36343	NA	Intergenic	Intergenic	-6263	NR_028272	283131	Hs.523789	NR_002802		NEAT1	LINC00084|NCRNA00084|TncRNA|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77306	chr4	141856475	141856636	+	11.36182	NA	intron (NM_020724, intron 4 of 6)	intron (NM_020724, intron 4 of 6)	-179084	NM_015130	23158	Hs.480819	NM_015130	HPRD:11115	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
19-PTNLD28-TUMOR_peak_60066	chr20	19316626	19316910	+	11.36182	NA	intron (NM_020689, intron 2 of 16)	intron (NM_020689, intron 2 of 16)	-51528	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	ncRNA
19-PTNLD28-TUMOR_peak_66411	chr3	8997072	8997381	+	11.36182	NA	intron (NM_020165, intron 2 of 12)	L1M3d|LINE|L1	7933	NM_020165	56852	Hs.375684	NM_020165	HPRD:09242	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_14512	chr10	80218853	80218972	+	11.36182	NA	Intergenic	Intergenic	191827	NR_073447	414243	Hs.55047	NR_073447	ENSG00000227136	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
19-PTNLD28-TUMOR_peak_77170	chr4	140065686	140065974	+	11.36182	NA	Intergenic	L1PBa|LINE|L1	-5200	NM_201999	1998	Hs.634040	NM_006874	HPRD:16856	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74-like factor 2 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_95420	chr7	132028011	132028174	+	11.36182	NA	intron (NM_020911, intron 3 of 31)	L1MB3|LINE|L1	233231	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_59016	chr2	236514381	236514569	+	11.36182	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	111742	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_27526	chr13	25592217	25592339	+	11.36182	NA	Intergenic	CpG	-49671	NR_026730	646405	Hs.620592	NM_001126062		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_25626	chr12	94946947	94947241	+	11.36182	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-8471	NR_049885	100847031		NR_049885	miRBase:MI0019307	MIR5700	-	microRNA 5700	ncRNA
19-PTNLD28-TUMOR_peak_72928	chr3	186179047	186179213	+	11.36182	NA	intron (NR_033844, intron 3 of 7)	Arthur1|DNA|hAT-Tip100	32320	NR_033844	253573	Hs.97386	NR_033844	ENSG00000224406	LOC253573	-	uncharacterized LOC253573	ncRNA
19-PTNLD28-TUMOR_peak_64949	chr22	28838357	28838834	+	11.36182	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-17262	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
19-PTNLD28-TUMOR_peak_24592	chr12	55052520	55052705	+	11.36182	NA	Intergenic	Intergenic	-10335	NM_053283	117159	Hs.350570	NM_053283	HPRD:07363	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
19-PTNLD28-TUMOR_peak_88593	chr6	86033276	86033389	+	11.36182	NA	Intergenic	Intergenic	-125970	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_30818	chr14	65386411	65386593	+	11.36182	NA	intron (NM_001204064, intron 1 of 2)	AluSz|SINE|Alu	5423	NM_001202558	100529261	Hs.325531	NM_001202558		CHURC1-FNTB	-	CHURC1-FNTB readthrough	protein-coding
19-PTNLD28-TUMOR_peak_91850	chr7	30588516	30588622	+	11.36182	NA	non-coding (NR_038889, exon 7 of 7)	non-coding (NR_038889, exon 7 of 7)	28826	NR_038889	401320	Hs.561708	NR_038889	ENSG00000196295	LOC401320	-	uncharacterized LOC401320	ncRNA
19-PTNLD28-TUMOR_peak_57404	chr2	189168467	189168616	+	11.36182	NA	intron (NR_045563, intron 2 of 12)	intron (NR_045563, intron 2 of 12)	6322	NR_030287	693146		NR_030287	miRBase:MI0003567	MIR561	MIRN561|hsa-mir-561	microRNA 561	ncRNA
19-PTNLD28-TUMOR_peak_74564	chr4	13666702	13666820	+	11.36182	NA	intron (NR_121681, intron 2 of 3)	L1PA3|LINE|L1	9958	NR_121681	101929071	Hs.543714	NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
19-PTNLD28-TUMOR_peak_42095	chr17	47099822	47100038	+	11.36182	NA	intron (NM_006546, intron 2 of 14)	intron (NM_006546, intron 2 of 14)	25156	NM_001160423	10642	Hs.144936	NM_006546	HPRD:09752	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin-like growth factor 2 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_13647	chr10	53478884	53479085	+	11.36182	NA	intron (NM_006258, intron 3 of 17)	L1MD3|LINE|L1	-19629	NM_015235	23283	Hs.591358	NM_015235	HPRD:09900	CSTF2T	CstF-64T	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	protein-coding
19-PTNLD28-TUMOR_peak_97479	chr8	20574638	20574806	+	11.36182	NA	Intergenic	Intergenic	-256775	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	ncRNA
19-PTNLD28-TUMOR_peak_9987	chr1	212671614	212671854	+	11.36182	NA	Intergenic	Intergenic	65505	NM_013349	29937	Hs.461787	NM_013349	HPRD:11603	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_11706	chr10	3475404	3475560	+	11.36182	NA	Intergenic	Intergenic	-260449	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_36545	chr16	16288834	16289014	+	11.36182	NA	intron (NM_001171, intron 10 of 30)	intron (NM_001171, intron 10 of 30)	28404	NM_001171	368	Hs.442182	NM_001171	HPRD:04453	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding
19-PTNLD28-TUMOR_peak_41608	chr17	41411634	41411769	+	11.36182	NA	Intergenic	LTR13|LTR|ERVK	-30639	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	ncRNA
19-PTNLD28-TUMOR_peak_20886	chr11	102845783	102845972	+	11.36182	NA	Intergenic	Intergenic	-19414	NM_002427	4322	Hs.2936	NM_002427	HPRD:02522	MMP13	CLG3|MANDP1|MMP-13	matrix metallopeptidase 13 (collagenase 3)	protein-coding
19-PTNLD28-TUMOR_peak_22237	chr11	131235671	131235880	+	11.36182	NA	Intergenic	Intergenic	-4596	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_88373	chr6	75445084	75445360	+	11.36182	NA	Intergenic	Intergenic	470401	NM_080645	1303	Hs.101302	NM_004370	HPRD:00377	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_12839	chr10	32981157	32981447	+	11.36182	NA	intron (NM_024688, intron 5 of 22)	MER76-int|LTR|ERVL	124651	NM_024688	79741	Hs.585464	NM_024688	HPRD:10698	CCDC7	BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_32281	chr14	105146963	105147084	+	11.35957	NA	Intergenic	Intergenic	-2937	NR_039860	100616300		NR_039860	miRBase:MI0017344	MIR4710	-	microRNA 4710	ncRNA
19-PTNLD28-TUMOR_peak_105834	chr9	123635909	123636079	+	11.35652	NA	intron (NM_001009936, intron 3 of 4)	intron (NM_001009936, intron 3 of 4)	3612	NM_001286843	26147	Hs.460124	NM_015651	HPRD:17846	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
19-PTNLD28-TUMOR_peak_41325	chr17	37896775	37897090	+	11.35652	NA	intron (NM_001242443, intron 1 of 14)	intron (NM_001242443, intron 1 of 14)	712	NM_001242443	2886	Hs.86859	NM_005310	HPRD:03311	GRB7	-	growth factor receptor-bound protein 7	protein-coding
19-PTNLD28-TUMOR_peak_55560	chr2	128283699	128283871	+	11.35597	NA	5' UTR (NM_017969, exon 1 of 14)	5' UTR (NM_017969, exon 1 of 14)	302	NM_017969	55677	Hs.469879	NM_017969	HPRD:07639	IWS1	-	IWS1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_47854	chr19	16936591	16936900	+	11.35597	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3453	NM_015260	23309	Hs.13999	NM_015260	HPRD:09691	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
19-PTNLD28-TUMOR_peak_15195	chr10	101381058	101381302	+	11.35597	NA	promoter-TSS (NM_031212)	promoter-TSS (NM_031212)	-959	NM_031212	81894	Hs.403790	NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L	solute carrier family 25 (mitochondrial iron transporter), member 28	protein-coding
19-PTNLD28-TUMOR_peak_90625	chr6	169569477	169569747	+	11.34918	NA	Intergenic	Intergenic	84597	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_16736	chr11	3414723	3414879	+	11.34918	NA	intron (NR_024248, intron 3 of 10)	AluSx3|SINE|Alu	-1656	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_50877	chr2	7055083	7055258	+	11.34918	NA	intron (NR_033997, intron 3 of 4)	intron (NR_033997, intron 3 of 4)	-2353	NM_014746	9781	Hs.22146	NM_014746	HPRD:11510	RNF144A	RNF144|UBCE7IP4	ring finger protein 144A	protein-coding
19-PTNLD28-TUMOR_peak_576	chr1	9189519	9189861	+	11.34918	NA	promoter-TSS (NM_024980)	promoter-TSS (NM_024980)	-461	NM_024980	80045	Hs.632367	NM_024980		GPR157	-	G protein-coupled receptor 157	protein-coding
19-PTNLD28-TUMOR_peak_92334	chr7	45019398	45019545	+	11.34918	NA	promoter-TSS (NM_033054)	promoter-TSS (NM_033054)	-767	NM_033054	64005	Hs.37617	NM_033054	HPRD:17622	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
19-PTNLD28-TUMOR_peak_61001	chr20	37676808	37676921	+	11.34918	NA	Intergenic	Intergenic	85883	NM_021931	60625	Hs.444520	NM_021931	HPRD:13145	DHX35	C20orf15|DDX35|KAIA0875	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding
19-PTNLD28-TUMOR_peak_3502	chr1	52605607	52605757	+	11.34896	NA	Intergenic	Intergenic	-2084	NM_004799	9372	Hs.532345	NM_004799	HPRD:04782	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_2403	chr1	36590857	36591019	+	11.34896	NA	promoter-TSS (NM_005202)	promoter-TSS (NM_005202)	-253	NM_005202	1296	Hs.353001	NM_005202	HPRD:08347	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen, type VIII, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_26961	chr12	124873381	124873666	+	11.34819	NA	intron (NM_001077261, intron 18 of 47)	CpG	-51735	NR_106940	102466204		NR_106940		MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
19-PTNLD28-TUMOR_peak_206	chr1	2139798	2140021	+	11.34717	NA	promoter-TSS (NM_001146310)	promoter-TSS (NM_001146310)	-737	NM_001146310	199990	Hs.107101	NM_182533	HPRD:08707	C1orf86	FAAP20|FP7162	chromosome 1 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_73282	chr3	192634294	192634457	+	11.34717	NA	intron (NM_178496, intron 1 of 1)	CpG	1575	NM_178496	151963	Hs.151443	NM_178496	HPRD:14092	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_96205	chr7	149068054	149068201	+	11.34676	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	85755	NR_036573	155060	Hs.490512	NR_015357	HPRD:17309	LOC155060	-	AI894139 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74390	chr4	8919847	8919970	+	11.34676	NA	Intergenic	Intergenic	-31569	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_106040	chr9	127105151	127105472	+	11.34676	NA	intron (NM_001166171, intron 9 of 10)	intron (NM_001166171, intron 9 of 10)	-10441	NR_027406	100129034	Hs.654980	NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
19-PTNLD28-TUMOR_peak_62587	chr20	62152405	62152546	+	11.34676	NA	intron (NM_024299, intron 1 of 3)	CpG-17002	342	NM_024299	79144	Hs.79625	NM_024299	HPRD:12750	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
19-PTNLD28-TUMOR_peak_52562	chr2	46505089	46505230	+	11.34676	NA	Intergenic	Intergenic	-19382	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_86651	chr6	31731448	31731638	+	11.34676	NA	intron (NR_037846, intron 26 of 28).3	intron (NR_037846, intron 26 of 28).3	770	NM_001039651	401251	Hs.371225	NM_001039651	ENSG00000228727	SAPCD1	C6orf26|NG23	suppressor APC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59151	chr2	239335206	239335567	+	11.34676	NA	promoter-TSS (NM_001040445)	promoter-TSS (NM_001040445)	-240	NM_001040445	51665	Hs.516788	NM_016114	HPRD:05767	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_3559	chr1	53739297	53739484	+	11.34676	NA	intron (NM_033300, intron 4 of 16)	intron (NM_033300, intron 4 of 16)	-35108	NM_002370	4116	Hs.421576	NM_002370	HPRD:04005	MAGOH	MAGOH1|MAGOHA	mago-nashi homolog, proliferation-associated (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_47710	chr19	15344922	15345097	+	11.34676	NA	Intergenic	MIR|SINE|MIR	-1151	NM_001142886	79852	Hs.156457	NM_024794	HPRD:12410	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
19-PTNLD28-TUMOR_peak_53148	chr2	65662985	65663171	+	11.34454	NA	Intergenic	CpG	-3422	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_10619	chr1	228354156	228354444	+	11.33611	NA	intron (NM_001010867, intron 1 of 2)	intron (NM_001010867, intron 1 of 2)	871	NM_001010867	200205	Hs.237017	NM_001010867	HPRD:17318	IBA57	C1orf69|MMDS3	IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_5028	chr1	95114291	95114415	+	11.33609	NA	Intergenic	Intergenic	-106940	NM_001993	2152	Hs.62192	NM_001993	HPRD:00603	F3	CD142|TF|TFA	coagulation factor III (thromboplastin, tissue factor)	protein-coding
19-PTNLD28-TUMOR_peak_5059	chr1	95505800	95506000	+	11.33445	NA	intron (NM_144988, intron 2 of 3)	intron (NM_144988, intron 2 of 3)	32607	NM_144988	199857	Hs.408927	NM_144988		ALG14	-	ALG14, UDP-N-acetylglucosaminyltransferase subunit	protein-coding
19-PTNLD28-TUMOR_peak_64246	chr22	18393409	18393655	+	11.33445	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-3880	NM_001136004	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_67924	chr3	46437737	46437859	+	11.33445	NA	intron (NR_125406, intron 1 of 3)	intron (NR_125406, intron 1 of 3)	10752	NR_125406	102724297	Hs.622021	NR_125406		LOC102724297	-	uncharacterized LOC102724297	ncRNA
19-PTNLD28-TUMOR_peak_21335	chr11	115373806	115374080	+	11.33287	NA	intron (NM_001301043, intron 1 of 11)	CpG	1298	NM_014333	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_79431	chr5	34523314	34523478	+	11.32965	NA	Intergenic	Intergenic	-133037	NM_015577	26064	Hs.431400	NM_015577	HPRD:09416	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
19-PTNLD28-TUMOR_peak_80785	chr5	75847360	75847660	+	11.32965	NA	intron (NM_001285460, intron 1 of 34)	SVA_B|Other|Other	4276	NM_001285460	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_95737	chr7	138909624	138909738	+	11.32965	NA	Intergenic	SVA_A|Other|Other	-6550	NM_173569	254048	Hs.153458	NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
19-PTNLD28-TUMOR_peak_17273	chr11	12864610	12864816	+	11.32965	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	146382	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
19-PTNLD28-TUMOR_peak_34827	chr15	82163356	82163612	+	11.32965	NA	Intergenic	L1PA2|LINE|L1	175000	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_59459	chr20	1783078	1783197	+	11.32965	NA	Intergenic	Intergenic	-22745	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80679	chr5	73502090	73502223	+	11.32965	NA	Intergenic	Intergenic	101994	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_41668	chr17	41949328	41949604	+	11.32965	NA	Intergenic	LTR3B_|LTR|ERVK	24950	NM_001168322	146894	Hs.147313	NM_145273	HPRD:18222	CD300LG	CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4	CD300 molecule-like family member g	protein-coding
19-PTNLD28-TUMOR_peak_61371	chr20	44553350	44553523	+	11.32965	NA	Intergenic	Intergenic	-9881	NM_022104	63935	Hs.472856	NM_022104	HPRD:12779	PCIF1	C20orf67|PPP1R121	PDX1 C-terminal inhibiting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_8988	chr1	192873588	192873718	+	11.32965	NA	Intergenic	Intergenic	95484	NM_002923	5997	Hs.78944	NM_002923	HPRD:02917	RGS2	G0S8	regulator of G-protein signaling 2	protein-coding
19-PTNLD28-TUMOR_peak_26042	chr12	106736541	106736661	+	11.32965	NA	intron (NM_152772, intron 9 of 9)	intron (NM_152772, intron 9 of 9)	-14835	NM_018082	55703	Hs.62696	NM_018082	HPRD:11447	POLR3B	C128|HLD8|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
19-PTNLD28-TUMOR_peak_98222	chr8	37853910	37854021	+	11.32965	NA	Intergenic	Intergenic	-29781	NM_000025	155	Hs.2549	NM_000025	HPRD:00188	ADRB3	BETA3AR	adrenoceptor beta 3	protein-coding
19-PTNLD28-TUMOR_peak_28864	chr13	101350733	101350939	+	11.32965	NA	Intergenic	L1PA2|LINE|L1	-9743	NR_047687	100885778	Hs.602949	NR_047687	ENSG00000233009	NALCN-AS1	-	NALCN antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81234	chr5	95744286	95744482	+	11.32415	NA	intron (NM_001177875, intron 8 of 13)	intron (NM_001177875, intron 8 of 13)	23479	NM_001177875	5122	Hs.78977	NM_000439	HPRD:01201	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
19-PTNLD28-TUMOR_peak_38438	chr16	68734180	68734325	+	11.32415	NA	Intergenic	Intergenic	-36943	NM_004360	999	Hs.461086	NM_004360	HPRD:01885	CDH1	Arc-1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1, type 1, E-cadherin (epithelial)	protein-coding
19-PTNLD28-TUMOR_peak_50706	chr2	38245	38397	+	11.32415	NA	TTS (NM_001077710)	TTS (NM_001077710)	8267	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_66682	chr3	12758454	12758631	+	11.32415	NA	Intergenic	Intergenic	42266	NM_001284407	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_77247	chr4	141021244	141021409	+	11.32415	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	53907	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_63172	chr21	33629261	33629446	+	11.32415	NA	Intergenic	Intergenic	22023	NM_018944	54069	Hs.190518	NM_018944	HPRD:10749	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
19-PTNLD28-TUMOR_peak_29028	chr13	110357203	110357396	+	11.32415	NA	Intergenic	LTR81A|LTR|Gypsy	-23322	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
19-PTNLD28-TUMOR_peak_45212	chr18	33161017	33161231	+	11.32415	NA	Intergenic	CpG	-10577	NR_039771	100616257		NR_039771		MIR3975	-	microRNA 3975	ncRNA
19-PTNLD28-TUMOR_peak_57885	chr2	203499978	203500135	+	11.32283	NA	exon (NM_173511, exon 1 of 8)	exon (NM_173511, exon 1 of 8)	155	NM_173511	150864	Hs.471130	NM_173511	HPRD:12445	FAM117B	ALS2CR13	family with sequence similarity 117, member B	protein-coding
19-PTNLD28-TUMOR_peak_91317	chr7	12725261	12725383	+	11.32171	NA	Intergenic	Intergenic	-1130	NM_001037164	10124	Hs.245540	NM_005738	HPRD:11987	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_88370	chr6	75308240	75308723	+	11.32042	NA	intron (NR_110856, intron 2 of 3)	MER63A|DNA|hAT-Blackjack	529314	NR_110856	101928516	Hs.384600	NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
19-PTNLD28-TUMOR_peak_14682	chr10	86287293	86287505	+	11.32042	NA	Intergenic	HERV17-int|LTR|ERV1	102461	NM_001284242	54462	Hs.461988	NM_018999	HPRD:13832	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
19-PTNLD28-TUMOR_peak_46958	chr19	7340273	7340427	+	11.32042	NA	Intergenic	Intergenic	-46339	NM_000208	3643	Hs.465744	NM_000208	HPRD:00975	INSR	CD220|HHF5	insulin receptor	protein-coding
19-PTNLD28-TUMOR_peak_51705	chr2	27184714	27184888	+	11.32042	NA	Intergenic	Intergenic	-8724	NM_012326	22924	Hs.515860	NM_012326	HPRD:16156	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_78426	chr4	187622039	187622240	+	11.32042	NA	intron (NM_005245, intron 2 of 26)	intron (NM_005245, intron 2 of 26)	22848	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_77669	chr4	154036838	154037216	+	11.32042	NA	Intergenic	Intergenic	-37243	NM_001130067	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_59975	chr20	17519282	17519457	+	11.32042	NA	intron (NM_001278608, intron 3 of 9)	intron (NM_001278608, intron 3 of 9)	-7355	NM_001195	631	Hs.129702	NM_001195	HPRD:04494	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1, filensin	protein-coding
19-PTNLD28-TUMOR_peak_51875	chr2	29248085	29248413	+	11.32042	NA	intron (NM_199280, intron 13 of 19)	intron (NM_199280, intron 13 of 19)	44085	NM_199280	165186	Hs.525977	NM_199280	HPRD:14110	FAM179A	-	family with sequence similarity 179, member A	protein-coding
19-PTNLD28-TUMOR_peak_103038	chr9	38057544	38057694	+	11.32042	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	11591	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_109535	chrX	134020411	134020596	+	11.32042	NA	Intergenic	Intergenic	28794	NM_019556	56180	Hs.590789	NM_019556	HPRD:06483	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_18865	chr11	61248529	61248695	+	11.32042	NA	promoter-TSS (NM_001170753)	promoter-TSS (NM_001170753)	27	NM_001170753	220004	Hs.729003	NM_145017	HPRD:16933	PPP1R32	C11orf66|IIIG9	protein phosphatase 1, regulatory subunit 32	protein-coding
19-PTNLD28-TUMOR_peak_36844	chr16	23474449	23474560	+	11.32042	NA	TTS (NM_015044)	TTS (NM_015044)	-9992	NM_153603	91949	Hs.185807	NM_153603	HPRD:07373	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
19-PTNLD28-TUMOR_peak_70936	chr3	133465248	133465448	+	11.32042	NA	intron (NM_001063, intron 1 of 16)	CpG	371	NM_001063	7018	Hs.518267	NM_001063	HPRD:01811	TF	PRO1557|PRO2086|TFQTL1	transferrin	protein-coding
19-PTNLD28-TUMOR_peak_101267	chr8	137094227	137094678	+	11.32042	NA	Intergenic	Intergenic	624736	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_19315	chr11	65511065	65511184	+	11.32042	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-22715	NM_032193	84153	Hs.718438	NM_032193	HPRD:16531	RNASEH2C	AGS3|AYP1	ribonuclease H2, subunit C	protein-coding
19-PTNLD28-TUMOR_peak_78451	chr4	188093763	188093903	+	11.32042	NA	Intergenic	Intergenic	332934	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	ncRNA
19-PTNLD28-TUMOR_peak_20519	chr11	89477385	89477484	+	11.32042	NA	Intergenic	L1PA3|LINE|L1	33967	NM_001146162	390231	Hs.723112	NM_001146162	ENSG00000214414	TRIM77	TRIM77P	tripartite motif containing 77	protein-coding
19-PTNLD28-TUMOR_peak_99922	chr8	104268224	104268461	+	11.32042	NA	Intergenic	Intergenic	-42319	NM_001164615	8323	Hs.591863	NM_003506	HPRD:04559	FZD6	FZ-6|FZ6|HFZ6|NDNC10	frizzled class receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_38289	chr16	67138080	67138301	+	11.32042	NA	Intergenic	L2c|LINE|L2	-5725	NM_025187	80262	Hs.513666	NM_025187	HPRD:17460	C16orf70	C16orf6|LIN10|lin-10	chromosome 16 open reading frame 70	protein-coding
19-PTNLD28-TUMOR_peak_38417	chr16	68451993	68452158	+	11.32042	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	30334	NM_018667	55512	Hs.368421	NM_018667	HPRD:16154	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	protein-coding
19-PTNLD28-TUMOR_peak_61575	chr20	46757285	46757581	+	11.31951	NA	Intergenic	Intergenic	-138572	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
19-PTNLD28-TUMOR_peak_45573	chr18	45564095	45564235	+	11.31951	NA	intron (NM_001039360, intron 2 of 2)	intron (NM_001039360, intron 2 of 2)	99515	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_383	chr1	6507896	6508370	+	11.31951	NA	intron (NM_031475, intron 7 of 12)	CpG	18122	NM_148965	8718	Hs.462529	NM_003790	HPRD:04532	TNFRSF25	APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	tumor necrosis factor receptor superfamily, member 25	protein-coding
19-PTNLD28-TUMOR_peak_86502	chr6	30709986	30710295	+	11.31937	NA	TTS (NM_003897)	TTS (NM_003897)	313	NM_005803	10211	Hs.179986	NM_005803	HPRD:06105	FLOT1	-	flotillin 1	protein-coding
19-PTNLD28-TUMOR_peak_49101	chr19	41152789	41152939	+	11.31588	NA	Intergenic	Intergenic	43163	NM_001289980	9253	Hs.326953	NM_004756		NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	numb homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_103329	chr9	45739410	45739767	+	11.31387	NA	Intergenic	Intergenic	-377355	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_38411	chr16	68298301	68298629	+	11.31387	NA	promoter-TSS (NM_001076785)	promoter-TSS (NM_001076785)	46	NM_001076785	9057	Hs.679580	NM_003983	HPRD:12031	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 (amino acid transporter light chain, y+L system), member 6	protein-coding
19-PTNLD28-TUMOR_peak_99056	chr8	67525092	67525273	+	11.31387	NA	5' UTR (NM_001144755, exon 1 of 15)	5' UTR (NM_001144755, exon 1 of 15)	302	NM_001144755	4603	Hs.445898	NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	v-myb avian myeloblastosis viral oncogene homolog-like 1	protein-coding
19-PTNLD28-TUMOR_peak_109423	chrX	129065449	129065770	+	11.31170	NA	Intergenic	Intergenic	25512	NM_006649	10813	Hs.458598	NM_006649	HPRD:06712	UTP14A	NYCO16|SDCCAG16|dJ537K23.3	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_63313	chr21	35909184	35909392	+	11.31170	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	-9980	NM_203418	1827	Hs.282326	NM_004414	HPRD:04226	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
19-PTNLD28-TUMOR_peak_105012	chr9	103235696	103236270	+	11.31170	NA	exon (NM_003692, exon 1 of 10)	exon (NM_003692, exon 1 of 10)	463	NM_003692	8577	Hs.598100	NM_003692	HPRD:04570	TMEFF1	C9orf2|CT120.1|H7365|TR-1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_54512	chr2	101435453	101435773	+	11.31170	NA	promoter-TSS (NM_002518)	promoter-TSS (NM_002518)	-1000	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_31711	chr14	92219316	92219697	+	11.31170	NA	Intergenic	Intergenic	-21093	NM_024764	79820	Hs.131755	NM_024764	HPRD:16613	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_47759	chr19	15921282	15921461	+	11.31170	NA	Intergenic	L1MB5|LINE|L1	-2435	NM_013940	26539	Hs.533925	NM_013940	HPRD:17667	OR10H1	-	olfactory receptor, family 10, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_4118	chr1	65640330	65640507	+	11.31170	NA	intron (NM_001005353, intron 2 of 5)	intron (NM_001005353, intron 2 of 5)	26568	NM_013410	205	Hs.10862	NM_013410	HPRD:00048	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_60934	chr20	36751508	36751633	+	11.31170	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	42130	NM_004613	7052	Hs.517033	NM_004613	HPRD:01825	TGM2	G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC	transglutaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_8195	chr1	172256507	172256633	+	11.31170	NA	intron (NM_001136127, intron 15 of 19)	intron (NM_001136127, intron 15 of 19)	-133258	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_7089	chr1	154581125	154581261	+	11.31005	NA	promoter-TSS (NM_015840)	promoter-TSS (NM_015840)	-469	NM_001111	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_44913	chr18	21165354	21165525	+	11.31005	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	1142	NM_000271	4864	Hs.464779	NM_000271	HPRD:09622	NPC1	NPC	Niemann-Pick disease, type C1	protein-coding
19-PTNLD28-TUMOR_peak_34555	chr15	75493205	75493392	+	11.31005	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-923	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_95518	chr7	134571334	134571544	+	11.30887	NA	intron (NM_004342, intron 3 of 13)	L3b|LINE|CR1	-4712	NM_033139	800	Hs.490203	NM_004342	HPRD:00251	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
19-PTNLD28-TUMOR_peak_49705	chr19	48972901	48973041	+	11.30887	NA	intron (NM_017457, intron 1 of 11)	CpG	506	NM_017457	9266	Hs.144011	NM_004228	HPRD:03925	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like	cytohesin 2	protein-coding
19-PTNLD28-TUMOR_peak_19259	chr11	65190330	65190666	+	11.30777	NA	non-coding (NR_028272, exon 1 of 1)	non-coding (NR_028272, exon 1 of 1)	229	NR_028272	283131	Hs.523789	NR_002802		NEAT1	LINC00084|NCRNA00084|TncRNA|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_85826	chr6	20189065	20189354	+	11.30537	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	23486	NR_073465	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_105809	chr9	123334253	123334390	+	11.30537	NA	intron (NM_001011649, intron 1 of 36)	intron (NM_001011649, intron 1 of 36)	8127	NR_073556	55755	Hs.269560	NM_018249	HPRD:09740	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_5065	chr1	95582336	95582559	+	11.30537	NA	promoter-TSS (NM_152487)	promoter-TSS (NM_152487)	-447	NM_152487	148534	Hs.483512	NM_152487	HPRD:08110	TMEM56	-	transmembrane protein 56	protein-coding
19-PTNLD28-TUMOR_peak_67487	chr3	35781531	35781725	+	11.30537	NA	intron (NM_016300, intron 17 of 19)	intron (NM_016300, intron 17 of 19)	-4340	NR_029824	406916		NR_029824		MIR128-2	MIR128B|MIRN128-2|MIRN128B|mir-128b	microRNA 128-2	ncRNA
19-PTNLD28-TUMOR_peak_87895	chr6	49518189	49518465	+	11.30537	NA	5' UTR (NM_001145652, exon 1 of 1)	5' UTR (NM_001145652, exon 1 of 1)	214	NM_001145652	135398	Hs.722010	NM_153344	HPRD:12852	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_30166	chr14	50159771	50160014	+	11.30537	NA	promoter-TSS (NM_172193)	promoter-TSS (NM_172193)	69	NM_172193	122773	Hs.509258	NM_172193	HPRD:13921	KLHDC1	MST025	kelch domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58602	chr2	224125497	224125596	+	11.30537	NA	Intergenic	Intergenic	208898	NM_080671	23704	Hs.348522	NM_080671	HPRD:09689	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_59180	chr2	240168209	240168663	+	11.30537	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-51283	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
19-PTNLD28-TUMOR_peak_37150	chr16	29690280	29690532	+	11.30447	NA	promoter-TSS (NM_014298)	promoter-TSS (NM_014298)	-35	NM_014298	23475	Hs.513484	NM_014298		QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_44609	chr18	11857537	11857716	+	11.30447	NA	5' UTR (NM_001261444, exon 1 of 8)	5' UTR (NM_001261444, exon 1 of 8)	189	NM_001261444	2774	Hs.136295	NM_002071	HPRD:00758	GNAL	DYT25	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	protein-coding
19-PTNLD28-TUMOR_peak_19919	chr11	72948078	72948195	+	11.30447	NA	3' UTR (NM_176072, exon 3 of 3)	3' UTR (NM_176072, exon 3 of 3)	18634	NM_176071	5029	Hs.339	NM_002564	HPRD:02499	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y, G-protein coupled, 2	protein-coding
19-PTNLD28-TUMOR_peak_44948	chr18	21594475	21594818	+	11.30447	NA	5' UTR (NM_001135993, exon 1 of 14)	5' UTR (NM_001135993, exon 1 of 14)	262	NM_001243425	125488	Hs.128576	NM_153211	HPRD:08745	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
19-PTNLD28-TUMOR_peak_101431	chr8	142012402	142012554	+	11.30104	NA	Intergenic	MIRc|SINE|MIR	-1066	NM_001199649	5747	Hs.395482	NM_005607	HPRD:02859	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_50135	chr19	53039424	53039681	+	11.30104	NA	intron (NM_001039886, intron 2 of 4)	CpG	8643	NM_001039886	388558	Hs.729294	NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
19-PTNLD28-TUMOR_peak_42777	chr17	60749794	60749910	+	11.30010	NA	intron (NM_006039, intron 8 of 29)	intron (NM_006039, intron 8 of 29)	45090	NM_006039	9902	Hs.7835	NM_006039	HPRD:10094	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor, C type 2	protein-coding
19-PTNLD28-TUMOR_peak_73759	chr4	676548	676671	+	11.29804	NA	TTS (NM_002477)	TTS (NM_002477)	4898	NM_002477	4636	Hs.410970	NM_002477	HPRD:01182	MYL5	-	myosin, light chain 5, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_108905	chrX	91471346	91471439	+	11.29451	NA	intron (NM_032969, intron 3 of 5)	L1PA3|LINE|L1	380932	NM_001168362	27328	Hs.655673	NM_014522	HPRD:02215	PCDH11X	PCDH-X|PCDH11|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
19-PTNLD28-TUMOR_peak_8354	chr1	175712229	175712357	+	11.29451	NA	intron (NM_003285, intron 1 of 22)	intron (NM_003285, intron 1 of 22)	459	NM_003285	7143	Hs.659864	NM_003285	HPRD:03589	TNR	TN-R	tenascin R	protein-coding
19-PTNLD28-TUMOR_peak_55574	chr2	128438931	128439180	+	11.29451	NA	5' UTR (NM_001161404, exon 1 of 10)	5' UTR (NM_001161404, exon 1 of 10)	305	NM_001161404	55679	Hs.469881	NM_017980	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_59640	chr20	4741301	4741592	+	11.29451	NA	Intergenic	CpG	-20132	NR_024267	149830	Hs.126516	NM_177549	HPRD:14086	PRNT	M8	prion protein (testis specific)	ncRNA
19-PTNLD28-TUMOR_peak_85489	chr6	13445314	13445466	+	11.29451	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	26905	NR_038459	54438	Hs.484686	NM_018988	HPRD:13574	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_25048	chr12	66178502	66178656	+	11.29451	NA	intron (NR_026825, intron 1 of 1)	intron (NR_026825, intron 1 of 1)	-39661	NM_003484	8091	Hs.505924	NM_003483	HPRD:02827	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
19-PTNLD28-TUMOR_peak_9576	chr1	204910945	204911085	+	11.29451	NA	intron (NM_001005388, intron 2 of 29)	intron (NM_001005388, intron 2 of 29)	-2339	NM_001160331	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_61669	chr20	47973304	47973529	+	11.29451	NA	Intergenic	Intergenic	76196	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
19-PTNLD28-TUMOR_peak_5278	chr1	108023324	108023454	+	11.29451	NA	exon (NM_014917, exon 6 of 6)	exon (NM_014917, exon 6 of 6)	207737	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_5881	chr1	117827358	117827459	+	11.29451	NA	Intergenic	Intergenic	-73826	NR_045604	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_80692	chr5	73657681	73657913	+	11.29451	NA	Intergenic	Intergenic	39486	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
19-PTNLD28-TUMOR_peak_74967	chr4	38387238	38387582	+	11.29451	NA	Intergenic	Intergenic	137391	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_72070	chr3	159627911	159628164	+	11.29451	NA	Intergenic	Intergenic	70387	NM_001197109	29970	Hs.134665	NM_014575	HPRD:15302	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_33054	chr15	35963573	35963711	+	11.29451	NA	intron (NR_038251, intron 1 of 2)	MIRc|SINE|MIR	-125238	NM_001141972	89978	Hs.107196	NM_080650	HPRD:14443	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
19-PTNLD28-TUMOR_peak_81392	chr5	102898187	102898390	+	11.29451	NA	intron (NM_031438, intron 1 of 6)	intron (NM_031438, intron 1 of 6)	214	NM_001300741	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_11536	chr1	247681598	247681834	+	11.29451	NA	promoter-TSS (NM_001281837)	promoter-TSS (NM_001281837)	-38	NM_001281837	148823	Hs.732113	NM_145278	HPRD:14082	GCSAML	C1orf150	germinal center-associated, signaling and motility-like	protein-coding
19-PTNLD28-TUMOR_peak_80855	chr5	77833780	77833907	+	11.29451	NA	intron (NM_005779, intron 3 of 4)	MER117|DNA|hAT-Charlie	110805	NM_005779	10184	Hs.79299	NM_005779	HPRD:17272	LHFPL2	-	lipoma HMGIC fusion partner-like 2	protein-coding
19-PTNLD28-TUMOR_peak_79080	chr5	15993174	15993375	+	11.29451	NA	Intergenic	Intergenic	186623	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_40974	chr17	30651029	30651195	+	11.29451	NA	3' UTR (NM_138328, exon 9 of 9)	3' UTR (NM_138328, exon 9 of 9)	18116	NM_022344	64149	Hs.655257	NM_022344		C17orf75	NJMU-R1	chromosome 17 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_66254	chr3	4788030	4788476	+	11.29451	NA	intron (NM_001168272, intron 43 of 60)	intron (NM_001168272, intron 43 of 60)	5021	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_75370	chr4	55904484	55904687	+	11.29451	NA	Intergenic	Intergenic	87177	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_101347	chr8	140035474	140035656	+	11.29451	NA	Intergenic	Intergenic	-109329	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_4809	chr1	90528733	90528887	+	11.29451	NA	Intergenic	L1PA3|LINE|L1	68132	NM_182976	284695	Hs.306221	NM_181781	HPRD:15774	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
19-PTNLD28-TUMOR_peak_38661	chr16	72773606	72773851	+	11.29451	NA	Intergenic	Intergenic	308546	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_82336	chr5	135265737	135265998	+	11.29451	NA	promoter-TSS (NM_012159)	promoter-TSS (NM_012159)	-139	NM_012159	26223	Hs.591275	NM_012159		FBXL21	FBL3B|FBXL3B|FBXL3P|Fbl21	F-box and leucine-rich repeat protein 21 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_20262	chr11	78357757	78357913	+	11.29451	NA	Intergenic	Intergenic	-71926	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_9337	chr1	202421548	202421674	+	11.29451	NA	intron (NM_002481, intron 13 of 23)	SVA_D|Other|Other	-10260	NM_032104	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_34207	chr15	69406713	69407049	+	11.29451	NA	intron (NR_031680, intron 3 of 4)	intron (NR_031680, intron 3 of 4)	33691	NR_026949	283673	Hs.177927	NM_173610	HPRD:08746	LINC00277	NCRNA00277|TMEM84	long intergenic non-protein coding RNA 277	ncRNA
19-PTNLD28-TUMOR_peak_90112	chr6	153277667	153277906	+	11.29451	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	26417	NM_012177	26271	Hs.520506	NM_012177	HPRD:09348	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
19-PTNLD28-TUMOR_peak_108343	chrX	51361564	51361875	+	11.29451	NA	Intergenic	CpG	63728	NR_033772	389857	Hs.730388	NR_033772	ENSG00000223591	CENPVP1	CENPVL1|PRR6L1	centromere protein V pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_38779	chr16	75594024	75594159	+	11.29013	NA	Intergenic	AluJo|SINE|Alu	-3907	NR_074083	79583	Hs.156784	NM_001077416	ENSG00000205084	TMEM231	ALYE870|JBTS20|MKS11|PRO1886	transmembrane protein 231	protein-coding
19-PTNLD28-TUMOR_peak_17871	chr11	32914870	32915085	+	11.29013	NA	intron (NM_001076786, intron 1 of 12)	CpG	253	NM_001076786	79832	Hs.369368	NM_024774	HPRD:08645	QSER1	-	glutamine and serine rich 1	protein-coding
19-PTNLD28-TUMOR_peak_49383	chr19	45908287	45908534	+	11.29003	NA	promoter-TSS (NM_006663)	promoter-TSS (NM_006663)	-98	NM_006663	10848	Hs.466937	NM_006663	HPRD:09195	PPP1R13L	IASPP|NKIP1|RAI|RAI4	protein phosphatase 1, regulatory subunit 13 like	protein-coding
19-PTNLD28-TUMOR_peak_76578	chr4	110651552	110651824	+	11.29003	NA	promoter-TSS (NM_030821)	promoter-TSS (NM_030821)	-446	NM_030821	81579	Hs.389452	NM_030821	HPRD:17858	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2, group XIIA	protein-coding
19-PTNLD28-TUMOR_peak_28100	chr13	45906120	45906269	+	11.29003	NA	Intergenic	AluJb|SINE|Alu	5550	NR_002967	677814	Hs.374596	NR_002967		SNORA31	ACA31	small nucleolar RNA, H/ACA box 31	snoRNA
19-PTNLD28-TUMOR_peak_77583	chr4	152246013	152246273	+	11.29003	NA	Intergenic	Intergenic	47818	NM_183375	345062	Hs.651266	NM_183375	HPRD:07110	PRSS48	ESSPL	protease, serine, 48	protein-coding
19-PTNLD28-TUMOR_peak_35740	chr16	1831747	1831907	+	11.28738	NA	intron (NM_080861, intron 1 of 6)	CpG	754	NM_080861	90864	Hs.592080	NM_080861	HPRD:18107	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
19-PTNLD28-TUMOR_peak_94469	chr7	101525436	101525665	+	11.28715	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	64668	NM_181552	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_105427	chr9	114423807	114423947	+	11.28642	NA	promoter-TSS (NM_001198664)	promoter-TSS (NM_001198664)	26	NM_001017998	2790	Hs.534196	NM_001017998	ENSG00000242616	GNG10	-	guanine nucleotide binding protein (G protein), gamma 10	protein-coding
19-PTNLD28-TUMOR_peak_45270	chr18	34899029	34899191	+	11.27921	NA	intron (NM_001025089, intron 3 of 11)	intron (NM_001025089, intron 3 of 11)	246890	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_70384	chr3	124887649	124887871	+	11.27844	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	-17364	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_109297	chrX	118740323	118740600	+	11.27844	NA	promoter-TSS (NM_001173487)	promoter-TSS (NM_001173487)	-615	NM_001173487	55922	Hs.437084	NM_017544	HPRD:02341	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
19-PTNLD28-TUMOR_peak_104882	chr9	100473038	100473210	+	11.27844	NA	Intergenic	Intergenic	-13433	NM_000380	7507	Hs.654364	NM_000380	HPRD:02045	XPA	XP1|XPAC	xeroderma pigmentosum, complementation group A	protein-coding
19-PTNLD28-TUMOR_peak_75319	chr4	54105361	54105493	+	11.27844	NA	intron (NM_152540, intron 4 of 8)	SVA_F|Other|Other	126815	NM_152540	152579	Hs.302287	NM_152540	HPRD:15300	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_40815	chr17	27224651	27224761	+	11.27844	NA	promoter-TSS (NM_004475)	promoter-TSS (NM_004475)	9	NM_004475	2319	Hs.514038	NM_004475	HPRD:00580	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
19-PTNLD28-TUMOR_peak_38721	chr16	75032528	75032667	+	11.27844	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	-318	NM_032268	84937	Hs.427284	NM_032268	HPRD:15893	ZNRF1	NIN283	zinc and ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_72914	chr3	186005731	186005881	+	11.27844	NA	intron (NM_001080744, intron 6 of 23)	intron (NM_001080744, intron 6 of 23)	74217	NM_001080745	1608	Hs.683449	NM_001346	HPRD:03510	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase, gamma 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_34793	chr15	81198828	81199041	+	11.27844	NA	intron (NM_018689, intron 11 of 28)	intron (NM_018689, intron 11 of 28)	-64520	NR_030393	693132		NR_030393	miRBase:MI0003679	MIR549A	MIR549|MIRN549|hsa-mir-549|hsa-mir-549a	microRNA 549a	ncRNA
19-PTNLD28-TUMOR_peak_83894	chr5	170871709	170871903	+	11.27844	NA	intron (NM_003862, intron 3 of 4)	MIRb|SINE|MIR	25139	NM_003862	8817	Hs.87191	NM_003862	HPRD:04766	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
19-PTNLD28-TUMOR_peak_75988	chr4	83270924	83271135	+	11.27844	NA	Intergenic	HAL1|LINE|L1	24120	NM_031369	3184	Hs.480073	NM_002138		HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	protein-coding
19-PTNLD28-TUMOR_peak_63842	chr21	44686671	44686811	+	11.27844	NA	Intergenic	AluSq2|SINE|Alu	65178	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
19-PTNLD28-TUMOR_peak_30840	chr14	65722347	65722521	+	11.27844	NA	Intergenic	Intergenic	-33369	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
19-PTNLD28-TUMOR_peak_25528	chr12	89619251	89619449	+	11.27844	NA	Intergenic	Intergenic	127286	NM_001946	1848	Hs.298654	NM_001946	HPRD:04124	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
19-PTNLD28-TUMOR_peak_106113	chr9	129279230	129279673	+	11.27844	NA	Intergenic	Intergenic	-97271	NM_001174147	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_27411	chr13	22051313	22051451	+	11.27844	NA	Intergenic	LTR50|LTR|ERVL	-17873	NR_104486	253832	Hs.564611	NM_153251		ZDHHC20	4933421L13Rik|DHHC-20	zinc finger, DHHC-type containing 20	protein-coding
19-PTNLD28-TUMOR_peak_42824	chr17	61600419	61600623	+	11.27844	NA	promoter-TSS (NM_173092)	promoter-TSS (NM_173092)	-174	NM_001278920	81033	Hs.591177	NM_030779	HPRD:16294	KCNH6	ERG-2|ERG2|HERG2|Kv11.2|hERG-2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding
19-PTNLD28-TUMOR_peak_27372	chr13	21035701	21035824	+	11.27844	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-27777	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_38623	chr16	71693498	71693616	+	11.27844	NA	intron (NM_001289003, intron 12 of 17)	intron (NM_001289003, intron 12 of 17)	33501	NM_001017967	91862	Hs.513706	NM_052858	HPRD:14365	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_27717	chr13	31412889	31412998	+	11.27844	NA	Intergenic	SVA_D|Other|Other	35600	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
19-PTNLD28-TUMOR_peak_77489	chr4	148403525	148403660	+	11.27844	NA	intron (NM_001256283, intron 1 of 6)	intron (NM_001256283, intron 1 of 6)	1523	NM_001957	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_40326	chr17	16356683	16356853	+	11.27844	NA	intron (NM_001113567, intron 2 of 3)	intron (NM_001113567, intron 2 of 3)	12228	NR_003054	692106		NR_003054	ENSG00000175061	SNORD65	HBII-135	small nucleolar RNA, C/D box 65	snoRNA
19-PTNLD28-TUMOR_peak_825	chr1	12135909	12136099	+	11.27844	NA	intron (NM_001281430, intron 1 of 13)	LTR19A|LTR|ERV1	12570	NM_001281430	943	Hs.1314	NM_001243	HPRD:01074	TNFRSF8	CD30|D1S166E|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_39819	chr17	4607107	4607265	+	11.27844	NA	promoter-TSS (NR_103482)	promoter-TSS (NR_103482)	-339	NR_103482	101559451	Hs.634966	NR_103482	ENSG00000244184	LOC101559451	-	uncharacterized LOC101559451	ncRNA
19-PTNLD28-TUMOR_peak_42398	chr17	53653565	53653734	+	11.27844	NA	Intergenic	L2a|LINE|L2	146576	NM_018286	55273	Hs.173233	NM_018286	HPRD:07719	TMEM100	-	transmembrane protein 100	protein-coding
19-PTNLD28-TUMOR_peak_91036	chr7	4849361	4849685	+	11.27844	NA	intron (NM_018059, intron 9 of 14)	AluSx|SINE|Alu	-21253	NR_039800	100616465		NR_039800	miRBase:MI0017284	MIR4656	-	microRNA 4656	ncRNA
19-PTNLD28-TUMOR_peak_33953	chr15	64286363	64286513	+	11.27844	NA	intron (NM_014326, intron 2 of 11)	L2b|LINE|L2	52083	NM_014326	23604	Hs.237886	NM_014326	HPRD:09905	DAPK2	DRP-1|DRP1	death-associated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_12357	chr10	22629288	22629931	+	11.27844	NA	Intergenic	CpG	-4765	NM_172242	9576	Hs.655170	NM_012443	HPRD:09305	SPAG6	CT141|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
19-PTNLD28-TUMOR_peak_48723	chr19	36336354	36336710	+	11.27844	NA	intron (NM_004646, intron 13 of 28)	CpG	6363	NM_004646	4868	Hs.122186	NM_004646	HPRD:04094	NPHS1	CNF|NPHN|nephrin	nephrosis 1, congenital, Finnish type (nephrin)	protein-coding
19-PTNLD28-TUMOR_peak_85724	chr6	17929173	17929352	+	11.27844	NA	intron (NM_001105568, intron 2 of 37)	intron (NM_001105568, intron 2 of 37)	58592	NM_001105568	63971	Hs.94499	NM_022113	HPRD:09256	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
19-PTNLD28-TUMOR_peak_52140	chr2	37578277	37578809	+	11.27844	NA	intron (NM_012413, intron 1 of 6)	intron (NM_012413, intron 1 of 6)	6790	NM_012413	25797	Hs.79033	NM_012413	HPRD:06140	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_57743	chr2	201273215	201273532	+	11.27448	NA	intron (NM_001282735, intron 3 of 12)	intron (NM_001282735, intron 3 of 12)	99700	NM_001282744	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_49486	chr19	46850084	46850618	+	11.27431	NA	promoter-TSS (NM_006247)	promoter-TSS (NM_006247)	100	NM_001204284	5536	Hs.654604	NM_006247	HPRD:02805	PPP5C	PP5|PPP5|PPT	protein phosphatase 5, catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_87208	chr6	37483825	37484052	+	11.27431	NA	Intergenic	Intergenic	-16238	NM_138493	154467	Hs.284207	NM_138493	HPRD:18561	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
19-PTNLD28-TUMOR_peak_6796	chr1	151547525	151547657	+	11.27431	NA	intron (NM_001301317, intron 10 of 13)	intron (NM_001301317, intron 10 of 13)	29319	NR_030280	693139		NR_030280		MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
19-PTNLD28-TUMOR_peak_86718	chr6	32121131	32121797	+	11.27408	NA	promoter-TSS (NM_005155)	promoter-TSS (NM_005155)	235	NM_138717	9374	Hs.332138	NM_005155	HPRD:04486	PPT2	C6orf8|G14|PPT-2	palmitoyl-protein thioesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_68933	chr3	69789345	69789460	+	11.27290	NA	intron (NM_198159, intron 1 of 9)	intron (NM_198159, intron 1 of 9)	816	NM_198159	4286	Hs.166017	NM_000248	HPRD:01138	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_85666	chr6	16685525	16685714	+	11.27290	NA	intron (NM_001128164, intron 2 of 7)	intron (NM_001128164, intron 2 of 7)	76102	NM_001128164	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_104466	chr9	92053587	92053749	+	11.27290	NA	intron (NM_006378, intron 2 of 17)	AluY|SINE|Alu	40943	NM_006378	10507	Hs.494406	NM_006378	HPRD:03520	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding
19-PTNLD28-TUMOR_peak_40830	chr17	27378707	27378850	+	11.26579	NA	intron (NM_016518, intron 2 of 7)	intron (NM_016518, intron 2 of 7)	8860	NM_016518	51268	Hs.462585	NM_016518	HPRD:17853	PIPOX	LPIPOX	pipecolic acid oxidase	protein-coding
19-PTNLD28-TUMOR_peak_62245	chr20	55835995	55836248	+	11.26579	NA	intron (NM_001719, intron 1 of 6)	intron (NM_001719, intron 1 of 6)	5586	NM_001719	655	Hs.473163	NM_001719	HPRD:00212	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
19-PTNLD28-TUMOR_peak_2111	chr1	32646028	32646179	+	11.26579	NA	exon (NM_175852, exon 2 of 11)	exon (NM_175852, exon 2 of 11)	758	NM_175852	200081	Hs.17987	NM_175852	HPRD:09408	TXLNA	IL14|TXLN	taxilin alpha	protein-coding
19-PTNLD28-TUMOR_peak_7669	chr1	161231083	161231300	+	11.26579	NA	intron (NM_001102566, intron 1 of 2)	intron (NM_001102566, intron 1 of 2)	2674	NM_001102566	654790	Hs.433150	NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_103866	chr9	75767481	75767640	+	11.26448	NA	intron (NM_000700, intron 1 of 12)	intron (NM_000700, intron 1 of 12)	779	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_63687	chr21	43126799	43127043	+	11.26448	NA	Intergenic	HAL1|LINE|L1	9014	NR_027272	150135	Hs.350679	NM_152506	HPRD:10741	LINC00479	C21orf129	long intergenic non-protein coding RNA 479	ncRNA
19-PTNLD28-TUMOR_peak_26360	chr12	112546141	112546749	+	11.26448	NA	intron (NM_024953, intron 1 of 23)	CpG	190	NM_024953	80018	Hs.530941	NM_024953	HPRD:08578	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_76171	chr4	88000218	88000370	+	11.26438	NA	intron (NM_001166693, intron 4 of 20)	intron (NM_001166693, intron 4 of 20)	72141	NM_005935	4299	Hs.480190	NM_005935	HPRD:08871	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_75591	chr4	69771678	69771901	+	11.26438	NA	Intergenic	HERV3-int|LTR|ERV1	45720	NM_024743	79799	Hs.122583	NM_024743	HPRD:08646	UGT2A3	-	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding
19-PTNLD28-TUMOR_peak_104121	chr9	84441581	84441767	+	11.26438	NA	Intergenic	Intergenic	-86678	NR_026851	347127	Hs.215235	NM_198509	ENSG00000240632	SPATA31D5P	FAM75D5|FAM75D5P	SPATA31 subfamily D, member 5, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_59263	chr2	241565229	241565729	+	11.26438	NA	intron (NM_005301, intron 1 of 1)	(GGGTG)n|Simple_repeat|Simple_repeat	817	NM_005301	2859	Hs.112218	NM_005301	HPRD:16003	GPR35	-	G protein-coupled receptor 35	protein-coding
19-PTNLD28-TUMOR_peak_442	chr1	7515492	7515977	+	11.26438	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-315595	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_106489	chr9	134405911	134406152	+	11.26438	NA	exon (NM_001135954, exon 2 of 6)	exon (NM_001135954, exon 2 of 6)	631	NM_001261450	83549	Hs.9597	NM_031432	HPRD:18256	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_68025	chr3	48196652	48196809	+	11.26438	NA	Intergenic	MIR3|SINE|MIR	33071	NM_001789	993	Hs.437705	NM_001789	HPRD:00305	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
19-PTNLD28-TUMOR_peak_50794	chr2	1604531	1604929	+	11.26438	NA	Intergenic	Intergenic	143589	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_50510	chr19	58070345	58070572	+	11.26438	NA	intron (NM_001277090, intron 1 of 5)	intron (NM_001277090, intron 1 of 5)	773	NM_001277091	162972	Hs.180257	NM_153231	HPRD:15834	ZNF550	-	zinc finger protein 550	protein-coding
19-PTNLD28-TUMOR_peak_90963	chr7	2960742	2960849	+	11.26265	NA	intron (NM_032415, intron 17 of 24)	intron (NM_032415, intron 17 of 24)	-76836	NM_001293092	2768	Hs.487341	NM_007353	HPRD:05093	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
19-PTNLD28-TUMOR_peak_92417	chr7	47294028	47294264	+	11.26265	NA	Intergenic	CpG	327596	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_67393	chr3	31983589	31983790	+	11.26265	NA	intron (NM_017784, intron 1 of 11)	AluY|SINE|Alu	-39577	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
19-PTNLD28-TUMOR_peak_86986	chr6	35172975	35173123	+	11.26265	NA	Intergenic	Intergenic	-9141	NM_152753	222663	Hs.12923	NM_152753	HPRD:18031	SCUBE3	CEGF3	signal peptide, CUB domain, EGF-like 3	protein-coding
19-PTNLD28-TUMOR_peak_2493	chr1	37721080	37721325	+	11.26265	NA	Intergenic	Intergenic	94038	NR_036217	100422898		NR_036217	miRBase:MI0015863	MIR4255	-	microRNA 4255	ncRNA
19-PTNLD28-TUMOR_peak_31874	chr14	95786042	95786216	+	11.26265	NA	exon (NM_024734, exon 1 of 13)	exon (NM_024734, exon 1 of 13)	116	NM_024734	79789	Hs.301478	NM_024734	HPRD:13076	CLMN	-	calmin (calponin-like, transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_109838	chrX	152213971	152214444	+	11.26265	NA	Intergenic	MER66D|LTR|ERV1	-10559	NM_013364	29944	Hs.449627	NM_013364	HPRD:06677	PNMA3	MA3|MA5	paraneoplastic Ma antigen 3	protein-coding
19-PTNLD28-TUMOR_peak_59473	chr20	1915465	1915652	+	11.26265	NA	intron (NM_001040023, intron 7 of 7)	intron (NM_001040023, intron 7 of 7)	39732	NM_001040023	140885	Hs.581021	NM_080792	HPRD:03912	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal-regulatory protein alpha	protein-coding
19-PTNLD28-TUMOR_peak_79756	chr5	45346900	45347022	+	11.26265	NA	intron (NM_021072, intron 5 of 7)	L1PA3|LINE|L1	349259	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
19-PTNLD28-TUMOR_peak_34075	chr15	66773431	66773657	+	11.26265	NA	intron (NM_002755, intron 5 of 10)	intron (NM_002755, intron 5 of 10)	16602	NM_006049	10302	Hs.30174	NM_006049	HPRD:16183	SNAPC5	SNAP19	small nuclear RNA activating complex, polypeptide 5, 19kDa	protein-coding
19-PTNLD28-TUMOR_peak_4057	chr1	64341870	64342039	+	11.26265	NA	intron (NM_001083592, intron 1 of 6)	intron (NM_001083592, intron 1 of 6)	102264	NM_001083592	4919	Hs.128753	NM_005012	HPRD:03821	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_99143	chr8	70806284	70806431	+	11.26265	NA	Intergenic	AluSz6|SINE|Alu	-59058	NM_030958	81796	Hs.152460	NM_030958	HPRD:15399	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	solute carrier organic anion transporter family, member 5A1	protein-coding
19-PTNLD28-TUMOR_peak_76135	chr4	87089729	87089936	+	11.26265	NA	intron (NM_138982, intron 3 of 13)	L1PA3|LINE|L1	48873	NR_110879	101929064	Hs.662221	NR_110879	ENSG00000250062	LOC101929064	-	uncharacterized LOC101929064	ncRNA
19-PTNLD28-TUMOR_peak_39591	chr17	916371	916610	+	11.26265	NA	intron (NM_001282149, intron 11 of 17)	intron (NM_001282149, intron 11 of 17)	9309	NR_036148	100422835		NR_036148		MIR3183	-	microRNA 3183	ncRNA
19-PTNLD28-TUMOR_peak_1615	chr1	25985500	25985939	+	11.26265	NA	intron (NM_001289010, intron 1 of 11)	intron (NM_001289010, intron 1 of 11)	41760	NM_020379	57134	Hs.197043	NM_020379		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase, alpha, class 1C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_30409	chr14	55263767	55263939	+	11.26265	NA	Intergenic	Intergenic	42347	NM_001161577	23034	Hs.98259	NM_015589	HPRD:10209	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_3871	chr1	59965403	59965520	+	11.26096	NA	intron (NM_001113411, intron 6 of 16)	intron (NM_001113411, intron 6 of 16)	-15840	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_90025	chr6	151187171	151187613	+	11.26096	NA	promoter-TSS (NM_001242768)	promoter-TSS (NM_001242768)	-77	NM_001242768	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_98089	chr8	32406014	32406191	+	11.26096	NA	5' UTR (NM_004495, exon 1 of 6)	5' UTR (NM_004495, exon 1 of 6)	374	NM_004495	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_64665	chr22	23489915	23490073	+	11.26096	NA	intron (NM_004914, intron 2 of 10)	L1MC4a|LINE|L1	2481	NM_004914	9609	Hs.369557	NM_004914	HPRD:05743	RAB36	-	RAB36, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_9498	chr1	204120819	204121323	+	11.26096	NA	5' UTR (NM_018208, exon 1 of 8)	5' UTR (NM_018208, exon 1 of 8)	239	NM_001297760	55224	Hs.497469	NM_018208	HPRD:13283	ETNK2	EKI2|HMFT1716	ethanolamine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_48941	chr19	39281497	39281626	+	11.26096	NA	intron (NM_001042507, intron 3 of 3)	CpG	1711	NM_001042507	653499	Hs.558355	NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	lectin, galactoside-binding, soluble, 7B	protein-coding
19-PTNLD28-TUMOR_peak_73595	chr3	196467741	196467881	+	11.25933	NA	intron (NM_002577, intron 1 of 14)	intron (NM_002577, intron 1 of 14)	1083	NM_002577	5062	Hs.518530	NM_002577	HPRD:05428	PAK2	PAK65|PAKgamma	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_9791	chr1	207043779	207043958	+	11.25933	NA	Intergenic	Intergenic	4714	NM_018724	50604	Hs.272373	NM_018724		IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
19-PTNLD28-TUMOR_peak_66766	chr3	13716472	13716819	+	11.25933	NA	intron (NR_027103, intron 1 of 5)	L2c|LINE|L2	24424	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
19-PTNLD28-TUMOR_peak_64994	chr22	29702248	29702416	+	11.25933	NA	promoter-TSS (NM_006478)	promoter-TSS (NM_006478)	-653	NM_152236	10634	Hs.322852	NM_006478	HPRD:03676	GAS2L1	GAR22	growth arrest-specific 2 like 1	protein-coding
19-PTNLD28-TUMOR_peak_49845	chr19	49997953	49998136	+	11.25548	NA	Intergenic	AluYc3|SINE|Alu	-1578	NM_001015	6205	Hs.433529	NM_001015	HPRD:01599	RPS11	S11	ribosomal protein S11	protein-coding
19-PTNLD28-TUMOR_peak_52233	chr2	38830644	38830808	+	11.25043	NA	promoter-TSS (NM_001142650)	promoter-TSS (NM_001142650)	-548	NM_001142650	92906	Hs.445497	NM_138394	HPRD:13667	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
19-PTNLD28-TUMOR_peak_60334	chr20	25842263	25842430	+	11.25016	NA	Intergenic	SST1|Satellite|centr	-7689	NR_110001	101926935	Hs.737440	NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
19-PTNLD28-TUMOR_peak_48103	chr19	18875302	18875551	+	11.24529	NA	intron (NM_001098482, intron 9 of 14)	intron (NM_001098482, intron 9 of 14)	26688	NM_000095	1311	Hs.1584	NM_000095	HPRD:02632	COMP	EDM1|EPD1|MED|PSACH|THBS5	cartilage oligomeric matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_692	chr1	10567540	10567778	+	11.24108	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	32656	NM_004565	5195	Hs.149983	NM_004565	HPRD:03477	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
19-PTNLD28-TUMOR_peak_98668	chr8	49427533	49427724	+	11.24108	NA	Intergenic	Intergenic	-36499	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_70427	chr3	125477721	125478041	+	11.24108	NA	Intergenic	LTR12C|LTR|ERV1	31514	NR_031687	100302204		NR_031687	miRBase:MI0006421	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1	microRNA 548i-1	ncRNA
19-PTNLD28-TUMOR_peak_11977	chr10	10836168	10836320	+	11.24108	NA	intron (NR_027082, intron 1 of 3)	intron (NR_027082, intron 1 of 3)	633	NR_027082	207107	Hs.31562	NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53008	chr2	62684156	62684293	+	11.24108	NA	Intergenic	CpG	49380	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_23907	chr12	45628445	45628598	+	11.24108	NA	intron (NM_001142679, intron 1 of 19)	intron (NM_001142679, intron 1 of 19)	-18732	NR_037144	51054	Hs.233495	NM_015899	HPRD:15143	PLEKHA8P1	PLEKHA9	pleckstrin homology domain containing, family A member 8 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_55717	chr2	131451151	131451370	+	11.23681	NA	Intergenic	CpG	13637	NR_023391	100132708	Hs.734862	NM_032248	ENSG00000214081	CYP4F30P	C2orf14	cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_39974	chr17	7284681	7284928	+	11.23681	NA	intron (NM_003985, intron 1 of 12)	intron (NM_003985, intron 1 of 12)	511	NM_003985	8711	Hs.203420	NM_003985	HPRD:09730	TNK1	-	tyrosine kinase, non-receptor, 1	protein-coding
19-PTNLD28-TUMOR_peak_18442	chr11	47182710	47182860	+	11.23681	NA	3' UTR (NM_001003676, exon 8 of 8)	3' UTR (NM_001003676, exon 8 of 8)	15891	NM_001242832	84364	Hs.436204	NM_032389	HPRD:06069	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP-ribosylation factor GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_58456	chr2	219824249	219824403	+	11.23681	NA	promoter-TSS (NM_003936)	promoter-TSS (NM_003936)	-24	NM_003936	8941	Hs.158460	NM_003936	HPRD:04790	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding
19-PTNLD28-TUMOR_peak_100143	chr8	114447900	114448030	+	11.23681	NA	intron (NM_198123, intron 1 of 70)	intron (NM_198123, intron 1 of 70)	1277	NM_052900	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_9476	chr1	203827290	203827404	+	11.23613	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-3393	NM_003094	6635	Hs.334612	NM_003094		SNRPE	B-raf|HYPT11|SME|Sm-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
19-PTNLD28-TUMOR_peak_103753	chr9	73026966	73027155	+	11.23613	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	2513	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_102909	chr9	35940526	35940717	+	11.23302	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	17530	NM_019897	56656	Hs.553540	NM_019897	HPRD:17704	OR2S2	OR37A|OST715	olfactory receptor, family 2, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_72647	chr3	182082282	182082381	+	11.23302	NA	Intergenic	7SK|RNA|RNA	121819	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	FLJ46066	-	uncharacterized LOC401103	ncRNA
19-PTNLD28-TUMOR_peak_57801	chr2	202041056	202041214	+	11.23302	NA	Intergenic	MER50|LTR|ERV1	-6486	NM_032977	843	Hs.5353	NM_001230	HPRD:03458	CASP10	ALPS2|FLICE2|MCH4	caspase 10, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_53277	chr2	69249799	69249918	+	11.23302	NA	intron (NM_053034, intron 1 of 14)	intron (NM_053034, intron 1 of 14)	9582	NM_032208	84168	Hs.165859	NM_018153	HPRD:05913	ANTXR1	ATR|GAPO|TEM8	anthrax toxin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_24244	chr12	51720768	51721077	+	11.23302	NA	Intergenic	Intergenic	-2458	NM_001290007	51411	Hs.14770	NM_016293	HPRD:05805	BIN2	BRAP-1	bridging integrator 2	protein-coding
19-PTNLD28-TUMOR_peak_38807	chr16	77258079	77258208	+	11.23302	NA	Intergenic	AluSz|SINE|Alu	24794	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_2516	chr1	38019364	38020014	+	11.23302	NA	exon (NM_024700, exon 1 of 4)	exon (NM_024700, exon 1 of 4)	256	NM_024700	79753	Hs.47232	NM_024700	HPRD:06999	SNIP1	PMRED	Smad nuclear interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_67451	chr3	33319219	33319335	+	11.23302	NA	intron (NM_012157, intron 1 of 14)	CpG	340	NM_001171713	25827	Hs.475872	NM_012157	HPRD:05736	FBXL2	FBL2|FBL3	F-box and leucine-rich repeat protein 2	protein-coding
19-PTNLD28-TUMOR_peak_78400	chr4	187065478	187065621	+	11.23302	NA	promoter-TSS (NM_015398)	promoter-TSS (NM_015398)	-446	NM_015398	25854	Hs.744961	NM_015398	HPRD:16810	FAM149A	MSTP119	family with sequence similarity 149, member A	protein-coding
19-PTNLD28-TUMOR_peak_85384	chr6	11855201	11855356	+	11.23302	NA	Intergenic	Intergenic	-75998	NM_032744	84830	Hs.126409	NM_032744	HPRD:12836	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
19-PTNLD28-TUMOR_peak_26881	chr12	123401458	123401582	+	11.23166	NA	Intergenic	Intergenic	-20808	NM_024667	79720	Hs.507162	NM_024667	HPRD:07794	VPS37B	-	vacuolar protein sorting 37 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_25240	chr12	70637699	70638015	+	11.23166	NA	promoter-TSS (NR_120459)	promoter-TSS (NR_120459)	363	NR_037615	4848	Hs.133350	NM_014515	HPRD:05367	CNOT2	CDC36|NOT2|NOT2H	CCR4-NOT transcription complex, subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_44101	chr17	80372678	80372859	+	11.23166	NA	intron (NR_033265, intron 2 of 9)	intron (NR_033265, intron 2 of 9)	-3484	NM_173620	284004	Hs.744207	NM_173620	HPRD:08677	HEXDC	-	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding
19-PTNLD28-TUMOR_peak_15868	chr10	119300888	119301071	+	11.23166	NA	promoter-TSS (NM_004098)	promoter-TSS (NM_004098)	-977	NM_001165924	2018	Hs.202095	NM_004098	HPRD:02495	EMX2	-	empty spiracles homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_10846	chr1	231763180	231763302	+	11.23166	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	680	NM_001164541	27185	Hs.13318	NM_018662	HPRD:05553	DISC1	C1orf136|SCZD9	disrupted in schizophrenia 1	protein-coding
19-PTNLD28-TUMOR_peak_74328	chr4	8239813	8240044	+	11.23166	NA	intron (NM_018986, intron 17 of 17)	MIRc|SINE|MIR	-31564	NM_001297559	94031	Hs.479119	NM_053044	HPRD:08821	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_67133	chr3	23203833	23203964	+	11.23147	NA	Intergenic	L1MB8|LINE|L1	-40886	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_61965	chr20	50808591	50809122	+	11.23147	NA	promoter-TSS (NM_022088)	promoter-TSS (NM_022088)	-332	NM_199427	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_29608	chr14	24836330	24836734	+	11.23064	NA	promoter-TSS (NM_001198965)	promoter-TSS (NM_001198965)	415	NM_001136022	4776	Hs.77810	NM_004554	HPRD:09096	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	protein-coding
19-PTNLD28-TUMOR_peak_48737	chr19	36394542	36394800	+	11.22825	NA	TTS (NM_198125)	TTS (NM_198125)	1289	NM_014266	10870	Hs.117339	NM_014266	HPRD:04971	HCST	DAP10|KAP10|PIK3AP	hematopoietic cell signal transducer	protein-coding
19-PTNLD28-TUMOR_peak_7470	chr1	158173702	158173810	+	11.22819	NA	Intergenic	Intergenic	24019	NM_001766	912	Hs.1799	NM_001766	HPRD:01780	CD1D	CD1A|R3	CD1d molecule	protein-coding
19-PTNLD28-TUMOR_peak_98083	chr8	32155006	32155210	+	11.22819	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	-143154	NR_047475	100874286	Hs.147060	NR_047475		NRG1-IT3	-	NRG1 intronic transcript 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_54376	chr2	98357103	98357250	+	11.22819	NA	TTS (NM_207519)	TTS (NM_207519)	6307	NM_207519	7535	Hs.234569	NM_001079	HPRD:01495	ZAP70	SRK|STCD|STD|TZK|ZAP-70	zeta-chain (TCR) associated protein kinase 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_108532	chrX	62393486	62393924	+	11.22819	NA	Intergenic	LTR25|LTR|ERV1	177513	NM_001012968	139886	Hs.612782	NM_001012968	HPRD:12556	SPIN4	-	spindlin family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_50081	chr19	52160337	52160509	+	11.22819	NA	Intergenic	Intergenic	-10291	NM_001098612	100049587	Hs.707374	NM_001098612	ENSG00000254415	SIGLEC14	-	sialic acid binding Ig-like lectin 14	protein-coding
19-PTNLD28-TUMOR_peak_22492	chr12	2809141	2809292	+	11.22819	NA	Intergenic	L1PA4|LINE|L1	-8893	NR_045725	100652846	Hs.683896	NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76724	chr4	117279868	117280049	+	11.22819	NA	Intergenic	HERVL18-int|LTR|ERVL	59077	NR_031737	100302290		NR_031737		MIR1973	hsa-mir-1973	microRNA 1973	ncRNA
19-PTNLD28-TUMOR_peak_89459	chr6	131456358	131456612	+	11.22819	NA	promoter-TSS (NM_016377)	promoter-TSS (NM_016377)	-341	NM_016377	9465	Hs.486483	NM_004842	HPRD:16065	AKAP7	AKAP15|AKAP18	A kinase (PRKA) anchor protein 7	protein-coding
19-PTNLD28-TUMOR_peak_46320	chr18	74421696	74421922	+	11.22819	NA	Intergenic	Intergenic	19823	NR_122073	400661	Hs.514963	NR_122073		LOC400661	-	uncharacterized LOC400661	ncRNA
19-PTNLD28-TUMOR_peak_89961	chr6	150336412	150336519	+	11.22819	NA	Intergenic	Intergenic	-10185	NR_024045	646024	Hs.560537	NR_024045	ENSG00000218358	RAET1K	-	retinoic acid early transcript 1K pseudogene	pseudo
19-PTNLD28-TUMOR_peak_108606	chrX	67913371	67913639	+	11.22819	NA	promoter-TSS (NM_001142504)	promoter-TSS (NM_001142504)	23	NM_001142504	9754	Hs.95140	NM_014725	HPRD:06730	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR-related lipid transfer (START) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_66092	chr22	50587449	50587821	+	11.22819	NA	intron (NM_001164106, intron 1 of 8)	intron (NM_001164106, intron 1 of 8)	2151	NM_001164106	54456	Hs.62880	NM_018995	HPRD:16158	MOV10L1	CHAMP|DJ402G11.8	Mov10 RISC complex RNA helicase like 1	protein-coding
19-PTNLD28-TUMOR_peak_30288	chr14	52498582	52498851	+	11.22819	NA	intron (NM_007361, intron 9 of 21)	intron (NM_007361, intron 9 of 21)	37230	NM_007361	22795	Hs.369840	NM_007361	HPRD:05654	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
19-PTNLD28-TUMOR_peak_92563	chr7	51316978	51317181	+	11.22819	NA	intron (NM_001287436, intron 1 of 13)	intron (NM_001287436, intron 1 of 13)	67436	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_17277	chr11	12915744	12915836	+	11.22819	NA	intron (NM_021961, intron 9 of 12)	intron (NM_021961, intron 9 of 12)	95305	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
19-PTNLD28-TUMOR_peak_78745	chr5	5396925	5397033	+	11.22819	NA	Intergenic	Intergenic	-25807	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongator complex ELL subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_55956	chr2	136975658	136975782	+	11.22819	NA	Intergenic	Intergenic	-99995	NM_003467	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_104985	chr9	102515866	102516061	+	11.22819	NA	intron (NR_109802, intron 2 of 6)	intron (NR_109802, intron 2 of 6)	66208	NR_109802	101928438	Hs.637767	NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
19-PTNLD28-TUMOR_peak_79994	chr5	55972241	55972492	+	11.22819	NA	Intergenic	Intergenic	-70307	NM_001287053	101928448	Hs.208052	NM_001287053		LOC101928448	-	uncharacterized LOC101928448	protein-coding
19-PTNLD28-TUMOR_peak_109069	chrX	105545613	105545837	+	11.22819	NA	Intergenic	Intergenic	133427	NM_152423	139221	Hs.592221	NM_152423	HPRD:06555	MUM1L1	-	melanoma associated antigen (mutated) 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1962	chr1	30584451	30584545	+	11.22819	NA	Intergenic	Intergenic	-74039	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_84989	chr6	4466613	4466807	+	11.22819	NA	Intergenic	Intergenic	-144089	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_106142	chr9	129702193	129702355	+	11.22819	NA	intron (NM_001190730, intron 1 of 11)	intron (NM_001190730, intron 1 of 11)	-22230	NM_001190728	9649	Hs.432842	NM_014636	HPRD:11479	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
19-PTNLD28-TUMOR_peak_75432	chr4	57396755	57397083	+	11.22819	NA	exon (NM_001256475, exon 1 of 9)	exon (NM_001256475, exon 1 of 9)	144	NM_001256475	100506564	Hs.573073	NM_001256475	ENSG00000249693	THEGL	-	theg spermatid protein-like	protein-coding
19-PTNLD28-TUMOR_peak_83675	chr5	162835376	162835689	+	11.22819	NA	Intergenic	Intergenic	-29045	NM_199246	900	Hs.79101	NM_004060	HPRD:03345	CCNG1	CCNG	cyclin G1	protein-coding
19-PTNLD28-TUMOR_peak_7666	chr1	161208097	161208227	+	11.22819	NA	promoter-TSS (NM_005122)	promoter-TSS (NM_005122)	-162	NM_001077473	9970	Hs.349642	NM_005122	HPRD:04858	NR1I3	CAR|CAR1|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding
19-PTNLD28-TUMOR_peak_102763	chr9	34163603	34163708	+	11.22819	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-15348	NM_001171204	51271	Hs.268963	NM_016525	HPRD:15597	UBAP1	NAG20|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_28397	chr13	62339378	62339893	+	11.22819	NA	Intergenic	MER52A|LTR|ERV1	264046	NR_046995	100874143	Hs.552684	NR_046995		LINC00358	-	long intergenic non-protein coding RNA 358	ncRNA
19-PTNLD28-TUMOR_peak_41750	chr17	42988592	42988688	+	11.22795	NA	exon (NM_001131019, exon 6 of 8)	exon (NM_001131019, exon 6 of 8)	4280	NM_001131019	2670	Hs.514227	NM_002055	HPRD:00675	GFAP	-	glial fibrillary acidic protein	protein-coding
19-PTNLD28-TUMOR_peak_45503	chr18	43913386	43913702	+	11.22795	NA	promoter-TSS (NM_152470)	promoter-TSS (NM_152470)	-643	NM_152470	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_78281	chr4	185021536	185021670	+	11.22795	NA	intron (NM_153343, intron 6 of 7)	intron (NM_153343, intron 6 of 7)	117511	NM_153343	133121	Hs.297814	NM_153343	HPRD:16863	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
19-PTNLD28-TUMOR_peak_9666	chr1	205680365	205680511	+	11.22795	NA	Intergenic	Intergenic	-30808	NM_033102	85414	Hs.278695	NM_033102	HPRD:16312	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45, member 3	protein-coding
19-PTNLD28-TUMOR_peak_31764	chr14	93389769	93389962	+	11.22795	NA	intron (NM_001275, intron 1 of 7)	CpG	420	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_50767	chr2	1006209	1006660	+	11.22795	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	59880	NM_018968	54221	Hs.595069	NM_018968	HPRD:16374	SNTG2	G2SYN|SYN5	syntrophin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_47210	chr19	10474658	10474860	+	11.22795	NA	intron (NM_003331, intron 9 of 24)	intron (NM_003331, intron 9 of 24)	16489	NM_003331	7297	Hs.75516	NM_003331	HPRD:01490	TYK2	JTK1	tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_48907	chr19	39005846	39006123	+	11.22795	NA	intron (NM_000540, intron 64 of 105)	intron (NM_000540, intron 64 of 105)	81644	NM_001042723	6261	Hs.466664	NM_000540	HPRD:01618	RYR1	CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1 (skeletal)	protein-coding
19-PTNLD28-TUMOR_peak_103702	chr9	72046776	72047006	+	11.22795	NA	intron (NM_001163, intron 12 of 12)	intron (NM_001163, intron 12 of 12)	102650	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_84407	chr5	177783668	177783848	+	11.22795	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	-123935	NR_103509	85007	Hs.248746	NM_153373	HPRD:18482	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_74085	chr4	4692657	4692946	+	11.22795	NA	intron (NR_037888, intron 4 of 5)	L2b|LINE|L2	148943	NR_037888	100507266	Hs.276795	NR_037888	ENSG00000247708	STX18-AS1	-	STX18 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_67189	chr3	24176747	24177094	+	11.22795	NA	intron (NM_001128176, intron 8 of 10)	intron (NM_001128176, intron 8 of 10)	-15895	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
19-PTNLD28-TUMOR_peak_5621	chr1	113423698	113423852	+	11.22795	NA	Intergenic	Intergenic	-30510	NR_103746	100996702	Hs.632431	NR_103746	ENSG00000215866	LINC01356	-	long intergenic non-protein coding RNA 1356	ncRNA
19-PTNLD28-TUMOR_peak_86310	chr6	28321785	28322149	+	11.22663	NA	intron (NM_001242894, intron 2 of 6)	LTR18B|LTR|ERVL	4276	NM_001242894	80317	Hs.380930	NM_024493	HPRD:11705	ZKSCAN3	ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47	zinc finger with KRAB and SCAN domains 3	protein-coding
19-PTNLD28-TUMOR_peak_22743	chr12	6451182	6451338	+	11.22416	NA	promoter-TSS (NM_001065)	promoter-TSS (NM_001065)	23	NM_001065	7132	Hs.279594	NM_001065	HPRD:01861	TNFRSF1A	CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60	tumor necrosis factor receptor superfamily, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_62420	chr20	58401329	58401737	+	11.22373	NA	intron (NM_001281507, intron 8 of 12)	intron (NM_001281507, intron 8 of 12)	105268	NM_183244	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_106761	chr9	139525991	139526121	+	11.22373	NA	Intergenic	Intergenic	-27252	NR_046367	51162	Hs.91481	NM_016215	HPRD:16351	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF-like-domain, multiple 7	protein-coding
19-PTNLD28-TUMOR_peak_12137	chr10	14510139	14510432	+	11.22373	NA	Intergenic	Intergenic	31710	NR_031668	100302116		NR_031668	miRBase:MI0006401	MIR1265	MIRN1265|hsa-mir-1265	microRNA 1265	ncRNA
19-PTNLD28-TUMOR_peak_103276	chr9	44178784	44178886	+	11.22373	NA	Intergenic	L2a|LINE|L2	-205750	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_35843	chr16	2765567	2765758	+	11.22373	NA	intron (NM_031948, intron 3 of 5)	CpG	4890	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	protease, serine 27	protein-coding
19-PTNLD28-TUMOR_peak_96547	chr7	153532939	153533112	+	11.22373	NA	Intergenic	Intergenic	-51157	NM_001039350	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_71609	chr3	149111297	149111421	+	11.22373	NA	Intergenic	MER91C|DNA|hAT-Tip100	-15791	NM_014220	4071	Hs.351316	NM_014220	HPRD:01854	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding
19-PTNLD28-TUMOR_peak_86548	chr6	30922931	30923064	+	11.22373	NA	TTS (NM_080870)	TTS (NM_080870)	14220	NM_080870	135656	Hs.631993	NM_080870	HPRD:16073	DPCR1	PBLT	diffuse panbronchiolitis critical region 1	protein-coding
19-PTNLD28-TUMOR_peak_33245	chr15	41708840	41709269	+	11.22373	NA	promoter-TSS (NM_015138)	promoter-TSS (NM_015138)	-248	NM_015138	23168	Hs.511096	NM_015138	HPRD:11071	RTF1	GTL7|KIAA0252	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_95606	chr7	135963472	135963730	+	11.22373	NA	Intergenic	Intergenic	-301397	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_27028	chr12	125391402	125391596	+	11.21911	NA	Intergenic	Intergenic	8088	NM_021009	7316	Hs.520348	NM_021009	HPRD:07038	UBC	HMG20	ubiquitin C	protein-coding
19-PTNLD28-TUMOR_peak_46389	chr18	77153672	77154031	+	11.21911	NA	Intergenic	CpG	-1921	NM_001278669	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_94498	chr7	102006018	102006159	+	11.21487	NA	intron (NM_001242713, intron 1 of 4)	AluSz6|SINE|Alu	1780	NM_001242713	100289561	Hs.406395	NM_001242713		LOC100289561	-	uncharacterized LOC100289561	protein-coding
19-PTNLD28-TUMOR_peak_16500	chr11	696185	696310	+	11.21487	NA	promoter-TSS (NM_021008)	promoter-TSS (NM_021008)	-493	NM_001293634	10522	Hs.243994	NM_021008	HPRD:04027	DEAF1	MRD24|NUDR|SPN|ZMYND5	DEAF1 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_101752	chr8	145578315	145578452	+	11.21487	NA	TTS (NM_012162)	TTS (NM_012162)	208	NM_001252404	340393	Hs.122231	NM_001252402	ENSG00000214597	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
19-PTNLD28-TUMOR_peak_44127	chr17	80605021	80605439	+	11.21347	NA	intron (NM_019613, intron 1 of 9)	intron (NM_019613, intron 1 of 9)	1181	NM_019613	56270	Hs.132161	NM_019613	HPRD:15669	WDR45B	WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
19-PTNLD28-TUMOR_peak_1733	chr1	27337542	27337791	+	11.21115	NA	intron (NM_052943, intron 1 of 1)	intron (NM_052943, intron 1 of 1)	1667	NM_052943	115572	Hs.632378	NM_052943	HPRD:16882	FAM46B	-	family with sequence similarity 46, member B	protein-coding
19-PTNLD28-TUMOR_peak_108004	chrX	40504107	40504586	+	11.20987	NA	intron (NM_144970, intron 2 of 6)	L2|LINE|L2	2473	NM_144970	159013	Hs.495961	NM_144970		CXorf38	-	chromosome X open reading frame 38	protein-coding
19-PTNLD28-TUMOR_peak_8022	chr1	168050691	168050853	+	11.20987	NA	3' UTR (NM_001267611, exon 6 of 6)	3' UTR (NM_001267611, exon 6 of 6)	54902	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_29252	chr14	19476676	19476778	+	11.20987	NA	Intergenic	Intergenic	-66616	NR_046104	642426	Hs.578301	NR_046104	ENSG00000257504	LOC642426	-	uncharacterized LOC642426	ncRNA
19-PTNLD28-TUMOR_peak_25814	chr12	101413600	101413717	+	11.20987	NA	intron (NM_001286616, intron 7 of 26)	intron (NM_001286616, intron 7 of 26)	118234	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_46999	chr19	7934933	7935098	+	11.20975	NA	exon (NM_001190467, exon 5 of 6)	exon (NM_001190467, exon 5 of 6)	4311	NM_001190467	80164	Hs.288540	NM_001080403	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
19-PTNLD28-TUMOR_peak_81093	chr5	89677217	89677504	+	11.20498	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	28243	NM_001297765	1070	Hs.591767	NM_004365	HPRD:04216	CETN3	CDC31|CEN3	centrin, EF-hand protein, 3	protein-coding
19-PTNLD28-TUMOR_peak_32965	chr15	33425009	33425149	+	11.20498	NA	intron (NM_001277313, intron 4 of 20)	intron (NM_001277313, intron 4 of 20)	61855	NM_001277314	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_48223	chr19	21622282	21622513	+	11.20498	NA	Intergenic	HERV3-int|LTR|ERV1	42476	NM_175910	284443	Hs.656558	NM_145326	HPRD:10043	ZNF493	-	zinc finger protein 493	protein-coding
19-PTNLD28-TUMOR_peak_109620	chrX	138276761	138276969	+	11.20498	NA	intron (NM_001139501, intron 2 of 7)	CpG	10320	NM_001139498	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_46307	chr18	74240834	74241049	+	11.20498	NA	intron (NR_015417, intron 1 of 2)	intron (NR_015417, intron 1 of 2)	329	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LINC00908	-	long intergenic non-protein coding RNA 908	ncRNA
19-PTNLD28-TUMOR_peak_75747	chr4	77157279	77157488	+	11.20498	NA	intron (NM_001242936, intron 2 of 7)	intron (NM_001242936, intron 2 of 7)	-15470	NM_001242939	100631383	Hs.720509	NM_001242939	ENSG00000272414	FAM47E-STBD1	-	FAM47E-STBD1 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_13764	chr10	61508707	61508907	+	11.20498	NA	intron (NR_038200, intron 1 of 3)	MIRb|SINE|MIR	4396	NR_038200	100507027	Hs.648790	NR_038199	ENSG00000227877	LINC00948	M1|MUSER1	long intergenic non-protein coding RNA 948	ncRNA
19-PTNLD28-TUMOR_peak_41499	chr17	40202559	40202774	+	11.20498	NA	Intergenic	Intergenic	-12622	NM_001242704	201181	Hs.443140	NM_001013624		ZNF385C	-	zinc finger protein 385C	protein-coding
19-PTNLD28-TUMOR_peak_57343	chr2	184318597	184318715	+	11.20498	NA	Intergenic	L1PA4|LINE|L1	329573	NM_001287585	129401	Hs.180591	NM_138285	HPRD:10486	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35kDa	protein-coding
19-PTNLD28-TUMOR_peak_23595	chr12	30461360	30461591	+	11.20498	NA	Intergenic	LTR35B|LTR|ERV1	368703	NM_001190995	10526	Hs.505136	NM_006390	HPRD:09282	IPO8	RANBP8	importin 8	protein-coding
19-PTNLD28-TUMOR_peak_11272	chr1	240445879	240446165	+	11.20498	NA	intron (NM_020066, intron 7 of 17)	intron (NM_020066, intron 7 of 17)	190837	NM_020066	56776	Hs.24889	NM_020066	HPRD:10449	FMN2	-	formin 2	protein-coding
19-PTNLD28-TUMOR_peak_108319	chrX	49969362	49969568	+	11.20498	NA	Intergenic	Intergenic	-3801	NM_003886	8852	Hs.97633	NM_003886	HPRD:02173	AKAP4	AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82	A kinase (PRKA) anchor protein 4	protein-coding
19-PTNLD28-TUMOR_peak_48203	chr19	20933209	20933363	+	11.20498	NA	Intergenic	HERVE-int|LTR|ERV1	-88884	NM_145297	199777	Hs.657001	NM_145297	HPRD:15881	ZNF626	-	zinc finger protein 626	protein-coding
19-PTNLD28-TUMOR_peak_108912	chrX	92689760	92689949	+	11.20498	NA	Intergenic	HERVE-int|LTR|ERV1	238828	NM_004538	4675	Hs.21365	NM_004538	HPRD:02123	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_100635	chr8	125919305	125919484	+	11.20498	NA	Intergenic	LTR17|LTR|ERV1	-34856	NR_027321	157381	Hs.638933	NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
19-PTNLD28-TUMOR_peak_36699	chr16	20880237	20880436	+	11.20498	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-31221	NM_020424	57149	Hs.745012	NM_020424	HPRD:14254	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76814	chr4	120446147	120446325	+	11.20498	NA	intron (NM_033437, intron 12 of 20)	intron (NM_033437, intron 12 of 20)	70298	NR_037630	645513	Hs.677546	NR_037630	ENSG00000245958	LOC645513	-	uncharacterized LOC645513	ncRNA
19-PTNLD28-TUMOR_peak_43317	chr17	72428143	72428491	+	11.20431	NA	intron (NM_022036, intron 1 of 3)	CpG	650	NM_022036	55890	Hs.446438	NM_018653		GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor, class C, group 5, member C	protein-coding
19-PTNLD28-TUMOR_peak_93124	chr7	72350579	72350751	+	11.20243	NA	intron (NM_001257190, intron 1 of 15)	CpG	759	NM_001257190	9883	Hs.655217	NM_172020	HPRD:11448	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
19-PTNLD28-TUMOR_peak_51	chr1	669022	669224	+	11.20130	NA	Intergenic	Intergenic	-3392	NR_028327	100133331	Hs.733048	NR_028327		LOC100133331	-	uncharacterized LOC100133331	ncRNA
19-PTNLD28-TUMOR_peak_92375	chr7	46205041	46205206	+	11.20008	NA	Intergenic	Intergenic	-244252	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_105715	chr9	119448604	119448782	+	11.20008	NA	promoter-TSS (NM_001099679)	promoter-TSS (NM_001099679)	801	NM_198186	23245	Hs.601562	NM_014010	HPRD:12498	ASTN2	bA67K19.1	astrotactin 2	protein-coding
19-PTNLD28-TUMOR_peak_72718	chr3	183484878	183485095	+	11.20008	NA	intron (NM_018023, intron 15 of 30)	intron (NM_018023, intron 15 of 30)	58407	NM_024871	79929	Hs.478465	NM_024871	HPRD:07793	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43017	chr17	64711955	64712169	+	11.20008	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-71128	NR_030364	693219		NR_030364		MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
19-PTNLD28-TUMOR_peak_106346	chr9	132040726	132041132	+	11.20008	NA	Intergenic	Intergenic	-3766	NR_121587	101929331	Hs.522428	NR_121587	ENSG00000224307	LOC101929331	-	uncharacterized LOC101929331	ncRNA
19-PTNLD28-TUMOR_peak_81220	chr5	95172347	95172590	+	11.20008	NA	Intergenic	Intergenic	-13891	NM_001118890	2745	Hs.28988	NM_002064	HPRD:02707	GLRX	GRX|GRX1	glutaredoxin (thioltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_54999	chr2	112913416	112914475	+	11.19789	NA	intron (NM_153214, intron 1 of 7)	MIRc|SINE|MIR	17983	NM_153214	129804	Hs.437696	NM_153214	HPRD:08783	FBLN7	TM14	fibulin 7	protein-coding
19-PTNLD28-TUMOR_peak_26929	chr12	124246552	124246912	+	11.19789	NA	promoter-TSS (NM_207437)	promoter-TSS (NM_207437)	-310	NM_207437	196385	Hs.622654	NM_207437	HPRD:13473	DNAH10	-	dynein, axonemal, heavy chain 10	protein-coding
19-PTNLD28-TUMOR_peak_44942	chr18	21551944	21552153	+	11.19789	NA	Intergenic	Intergenic	-20689	NM_153211	125488	Hs.128576	NM_153211	HPRD:08745	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
19-PTNLD28-TUMOR_peak_60880	chr20	36035637	36035821	+	11.19789	NA	Intergenic	AluJo|SINE|Alu	61198	NM_198291	6714	Hs.195659	NM_005417	HPRD:01819	SRC	ASV|SRC1|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_66381	chr3	8680721	8680944	+	11.19789	NA	intron (NM_001256749, intron 1 of 11)	intron (NM_001256749, intron 1 of 11)	5652	NR_046358	51066	Hs.736935	NM_015931	HPRD:11267	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_108718	chrX	71401145	71401561	+	11.19644	NA	promoter-TSS (NM_001170747)	promoter-TSS (NM_001170747)	-173	NM_001170747	5303	Hs.655623	NM_006223	HPRD:02219	PIN4	EPVH|PAR14|PAR17	protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding
19-PTNLD28-TUMOR_peak_105888	chr9	124321621	124321787	+	11.19342	NA	Intergenic	AluJb|SINE|Alu	-7677	NM_032552	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_94303	chr7	100033354	100033922	+	11.19342	NA	exon (NM_145030, exon 2 of 4)	exon (NM_145030, exon 2 of 4)	456	NM_145030	221908	Hs.413359	NM_145030	HPRD:14486	PPP1R35	C7orf47	protein phosphatase 1, regulatory subunit 35	protein-coding
19-PTNLD28-TUMOR_peak_7585	chr1	160175149	160175277	+	11.19342	NA	non-coding (NR_123724, exon 1 of 3)	non-coding (NR_123724, exon 1 of 3)	104	NR_123724	8682	Hs.517216	NM_003768	HPRD:04579	PEA15	HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED	phosphoprotein enriched in astrocytes 15	protein-coding
19-PTNLD28-TUMOR_peak_50488	chr19	57776966	57777155	+	11.18814	NA	Intergenic	L2|LINE|L2	-14793	NM_006635	10794	Hs.99971	NM_006635	HPRD:06885	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
19-PTNLD28-TUMOR_peak_41808	chr17	43380222	43380396	+	11.18814	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	14121	NM_003954	9020	Hs.404183	NM_003954		MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_81939	chr5	126179132	126179331	+	11.18814	NA	Intergenic	HERVH-int|LTR|ERV1	66386	NM_001198557	4001	Hs.89497	NM_005573	HPRD:01036	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding
19-PTNLD28-TUMOR_peak_1530	chr1	24469721	24469904	+	11.18814	NA	promoter-TSS (NM_021258)	promoter-TSS (NM_021258)	-37	NM_021258	58985	Hs.110915	NM_021258	HPRD:16108	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_1371	chr1	22345691	22345818	+	11.18814	NA	Intergenic	Intergenic	-5930	NR_023918	29092	Hs.279842	NR_023918	ENSG00000218510	LINC00339	HSPC157|NCRNA00339	long intergenic non-protein coding RNA 339	ncRNA
19-PTNLD28-TUMOR_peak_103810	chr9	74654009	74654148	+	11.18814	NA	Intergenic	Intergenic	21443	NM_001128618	138240	Hs.371235	NM_001128618	ENSG00000204669	C9orf57	-	chromosome 9 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_28248	chr13	50570865	50570994	+	11.18814	NA	promoter-TSS (NM_005798)	promoter-TSS (NM_005798)	-214	NM_213590	10206	Hs.436922	NM_005798	HPRD:10414	TRIM13	CAR|DLEU5|LEU5|RFP2|RNF77	tripartite motif containing 13	protein-coding
19-PTNLD28-TUMOR_peak_103641	chr9	70877625	70877768	+	11.18814	NA	intron (NM_001291821, intron 5 of 13)	L2a|LINE|L2	20835	NM_001291821	445571	Hs.645337	NM_201453		CBWD3	bA561O23.1	COBW domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_4227	chr1	68190689	68190827	+	11.18814	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	39898	NM_001924	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_57021	chr2	174219982	174220309	+	11.18814	NA	intron (NM_145810, intron 1 of 8)	CpG	584	NM_145810	83879	Hs.470654	NM_031942	HPRD:09874	CDCA7	JPO1	cell division cycle associated 7	protein-coding
19-PTNLD28-TUMOR_peak_99755	chr8	101919020	101919279	+	11.18808	NA	Intergenic	Intergenic	43650	NM_001135702	7534	Hs.492407	NM_003406	HPRD:03183	YWHAZ	14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta	protein-coding
19-PTNLD28-TUMOR_peak_33215	chr15	41139672	41139790	+	11.18808	NA	intron (NM_001032367, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	3088	NM_001032367	6692	Hs.233950	NM_003710	HPRD:05494	SPINT1	HAI|HAI1|MANSC2	serine peptidase inhibitor, Kunitz type 1	protein-coding
19-PTNLD28-TUMOR_peak_62675	chr20	62960362	62960529	+	11.18808	NA	Intergenic	L2b|LINE|L2	38707	NR_040415	140849	Hs.745565	NR_040415		LINC00266-1	C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3	long intergenic non-protein coding RNA 266-1	ncRNA
19-PTNLD28-TUMOR_peak_12463	chr10	24777679	24777822	+	11.18808	NA	intron (NM_001282767, intron 6 of 18)	intron (NM_001282767, intron 6 of 18)	22316	NM_001282770	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_6626	chr1	149812350	149812541	+	11.18649	NA	exon (NM_021059, exon 1 of 1)	exon (NM_021059, exon 1 of 1)	320	NM_021059	126961	Hs.647745	NM_021059		HIST2H3C	H3|H3.2|H3/M|H3F2|H3FM|H3FN	histone cluster 2, H3c	protein-coding
19-PTNLD28-TUMOR_peak_1204	chr1	19336444	19336740	+	11.18283	NA	Intergenic	Intergenic	-53766	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
19-PTNLD28-TUMOR_peak_12306	chr10	21484349	21484562	+	11.18283	NA	Intergenic	Intergenic	21224	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31190	chr14	73025338	73025779	+	11.18283	NA	intron (NM_001204417, intron 17 of 17)	intron (NM_001204417, intron 17 of 17)	42030	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_72008	chr3	158443236	158443395	+	11.17857	NA	intron (NM_206963, intron 1 of 5)	intron (NM_206963, intron 1 of 5)	6960	NM_002888	5918	Hs.131269	NM_002888	HPRD:05477	RARRES1	LXNL|TIG1	retinoic acid receptor responder (tazarotene induced) 1	protein-coding
19-PTNLD28-TUMOR_peak_79520	chr5	36689471	36689622	+	11.17857	NA	Intergenic	Intergenic	83089	NM_001289940	6507	Hs.481918	NM_004172	HPRD:02523	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_81806	chr5	122371572	122371887	+	11.17857	NA	intron (NM_000943, intron 1 of 4)	CpG	696	NM_000943	5480	Hs.110364	NM_000943	HPRD:00459	PPIC	CYPC	peptidylprolyl isomerase C (cyclophilin C)	protein-coding
19-PTNLD28-TUMOR_peak_42980	chr17	63557179	63557319	+	11.17848	NA	intron (NM_004655, intron 1 of 10)	CpG	491	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_11923	chr10	7583811	7584016	+	11.17848	NA	Intergenic	Intergenic	77723	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_3223	chr1	46835278	46835456	+	11.17754	NA	Intergenic	L2c|LINE|L2	-24572	NM_001441	2166	Hs.720143	NM_001441	HPRD:04244	FAAH	FAAH-1|PSAB	fatty acid amide hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_38639	chr16	71924669	71924809	+	11.17754	NA	Intergenic	AluY|SINE|Alu	-3572	NM_001270976	9798	Hs.232194	NM_014761		IST1	OLC1	increased sodium tolerance 1 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_60587	chr20	32273596	32273717	+	11.17754	NA	intron (NM_005225, intron 1 of 6)	CpG	554	NM_005225	1869	Hs.654393	NM_005225	HPRD:01806	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_19107	chr11	63803997	63804232	+	11.17742	NA	intron (NM_014067, intron 3 of 10)	CpG	50789	NM_017670	55611	Hs.473788	NM_017670		OTUB1	OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
19-PTNLD28-TUMOR_peak_4384	chr1	76143892	76144050	+	11.17742	NA	Intergenic	L1PA3|LINE|L1	-46061	NM_000016	34	Hs.445040	NM_000016	HPRD:08447	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase, C-4 to C-12 straight chain	protein-coding
19-PTNLD28-TUMOR_peak_74946	chr4	37983952	37984156	+	11.17742	NA	intron (NM_001253912, intron 2 of 20)	intron (NM_001253912, intron 2 of 20)	21998	NM_006607	10744	Hs.668806	NM_006607	HPRD:09176	PTTG2	-	pituitary tumor-transforming 2	protein-coding
19-PTNLD28-TUMOR_peak_26605	chr12	120154043	120154801	+	11.17742	NA	intron (NM_001206999, intron 32 of 47)	intron (NM_001206999, intron 32 of 47)	-2893	NR_031589	100302274		NR_031589		MIR1178	MIRN1178|hsa-mir-1178	microRNA 1178	ncRNA
19-PTNLD28-TUMOR_peak_16744	chr11	3452764	3452895	+	11.17742	NA	Intergenic	Intergenic	-39684	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90856	chr7	1651407	1651770	+	11.17742	NA	Intergenic	Intergenic	-2518	NR_001288	260341	Hs.534596	NR_001288		TFAMP1	MTTF1|TCF6L1	transcription factor A, mitochondrial pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_53502	chr2	73912967	73913128	+	11.17742	NA	TTS (NR_003683)	TTS (NR_003683)	15420	NM_016347	51471	Hs.278983	NM_016347		NAT8B	CML2|Hcml2|NAT8BP	N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_33616	chr15	52860413	52860577	+	11.17742	NA	intron (NM_006628, intron 1 of 2)	intron (NM_006628, intron 1 of 2)	718	NM_006628	10776	Hs.512908	NM_006628	HPRD:09264	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP-regulated phosphoprotein, 19kDa	protein-coding
19-PTNLD28-TUMOR_peak_91477	chr7	20225738	20225863	+	11.17742	NA	intron (NM_182762, intron 1 of 6)	intron (NM_182762, intron 1 of 6)	31213	NM_182762	346389	Hs.598388	NM_182762	HPRD:12381	MACC1	7A5|SH3BP4L	metastasis associated in colon cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_4789	chr1	90308594	90308735	+	11.17742	NA	intron (NM_018103, intron 1 of 2)	intron (NM_018103, intron 1 of 2)	21184	NM_018103	55144	Hs.482087	NM_018103	HPRD:11287	LRRC8D	LRRC5	leucine rich repeat containing 8 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_49660	chr19	48458755	48458883	+	11.17536	NA	promoter-TSS (NR_024217).2	promoter-TSS (NR_024217).2	-120	NR_024220	100170225	Hs.717052	NR_024220		SNAR-C1	-	small ILF3/NF90-associated RNA C1	snRNA
19-PTNLD28-TUMOR_peak_1007	chr1	16007221	16007397	+	11.17382	NA	Intergenic	Intergenic	-3518	NM_015164	23207	Hs.646775	NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding
19-PTNLD28-TUMOR_peak_94576	chr7	102782537	102782771	+	11.17347	NA	non-coding (NR_026660, exon 1 of 1)	non-coding (NR_026660, exon 1 of 1)	196	NR_026660	100129424	Hs.720729	NR_026660		RPL19P12	RPL19_4_829	ribosomal protein L19 pseudogene 12	pseudo
19-PTNLD28-TUMOR_peak_91004	chr7	3997441	3997839	+	11.17347	NA	intron (NM_152744, intron 7 of 44)	intron (NM_152744, intron 7 of 44)	-171677	NM_001079653	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_99787	chr8	102217302	102217467	+	11.17251	NA	intron (NM_001267708, intron 1 of 5)	CpG	576	NM_001267708	51123	Hs.374485	NM_016096	HPRD:13688	ZNF706	PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
19-PTNLD28-TUMOR_peak_60448	chr20	30430176	30430452	+	11.17214	NA	Intergenic	Intergenic	3106	NM_004118	2307	Hs.516971	NM_004118	HPRD:04246	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
19-PTNLD28-TUMOR_peak_65330	chr22	36727675	36727800	+	11.17214	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-44784	NR_106877	102465491		NR_106877		MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19-PTNLD28-TUMOR_peak_85804	chr6	19805419	19805643	+	11.17214	NA	Intergenic	L2b|LINE|L2	-32070	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_9001	chr1	193373457	193373780	+	11.16392	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	99743	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_100987	chr8	131531128	131531288	+	11.16392	NA	Intergenic	Intergenic	-75302	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_63735	chr21	43537411	43537784	+	11.16392	NA	intron (NM_001004416, intron 14 of 22)	intron (NM_001004416, intron 14 of 22)	-8953	NR_027243	150147	Hs.558646	NM_152507	HPRD:10740	C21orf128	-	chromosome 21 open reading frame 128	ncRNA
19-PTNLD28-TUMOR_peak_84436	chr5	178167288	178167446	+	11.16392	NA	Intergenic	Intergenic	-9664	NM_005649	6940	Hs.484324	NM_005649	HPRD:03900	ZNF354A	EZNF|HEL104|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
19-PTNLD28-TUMOR_peak_51571	chr2	24587864	24588115	+	11.16392	NA	Intergenic	Intergenic	-4592	NM_006277	50618	Hs.432562	NM_006277	HPRD:09193	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
19-PTNLD28-TUMOR_peak_67655	chr3	40547768	40547935	+	11.16314	NA	exon (NM_175888, exon 2 of 5)	exon (NM_175888, exon 2 of 5)	249	NM_001256168	253639	Hs.581541	NM_175888	HPRD:15878	ZNF620	-	zinc finger protein 620	protein-coding
19-PTNLD28-TUMOR_peak_24012	chr12	48119814	48119952	+	11.16314	NA	promoter-TSS (NM_006025)	promoter-TSS (NM_006025)	-528	NM_001172440	8909	Hs.997	NM_006025	HPRD:12110	ENDOU	P11|PP11|PRSS26	endonuclease, polyU-specific	protein-coding
19-PTNLD28-TUMOR_peak_8510	chr1	179112561	179112755	+	11.16314	NA	promoter-TSS (NM_001136000)	promoter-TSS (NM_001136000)	-434	NM_001136000	27	Hs.159472	NM_005158	HPRD:01259	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_12504	chr10	25464828	25464958	+	11.16314	NA	exon (NM_020752, exon 1 of 11)	exon (NM_020752, exon 1 of 11)	312	NR_027333	100128811	Hs.700407	NR_027333	ENSG00000233642	GPR158-AS1	-	GPR158 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65669	chr22	41633606	41633868	+	11.16314	NA	exon (NM_138481, exon 3 of 6)	exon (NM_138481, exon 3 of 6)	3198	NM_138481	150356	Hs.344488	NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin-like	protein-coding
19-PTNLD28-TUMOR_peak_31046	chr14	70014688	70015032	+	11.16314	NA	Intergenic	CpG	26740	NM_001271507	56936	Hs.458319	NM_020181		CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
19-PTNLD28-TUMOR_peak_67075	chr3	20084957	20085205	+	11.16275	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	3557	NM_003884	8850	Hs.533055	NM_003884	HPRD:06780	KAT2B	CAF|P/CAF|PCAF	K(lysine) acetyltransferase 2B	protein-coding
19-PTNLD28-TUMOR_peak_98051	chr8	30660768	30661097	+	11.16275	NA	intron (NM_001009552, intron 1 of 6)	AluJr|SINE|Alu	9420	NM_001009552	5516	Hs.491440	NM_004156	HPRD:01487	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2, catalytic subunit, beta isozyme	protein-coding
19-PTNLD28-TUMOR_peak_94306	chr7	100062994	100063224	+	11.16275	NA	Intergenic	AluJb|SINE|Alu	-1215	NM_001004323	402573	Hs.632306	NM_001004323	HPRD:17558	C7orf61	-	chromosome 7 open reading frame 61	protein-coding
19-PTNLD28-TUMOR_peak_95167	chr7	128603498	128603639	+	11.16270	NA	intron (NM_012470, intron 21 of 22)	intron (NM_012470, intron 21 of 22)	22844	NM_001098627	3663	Hs.521181	NM_032643	HPRD:06240	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
19-PTNLD28-TUMOR_peak_108632	chrX	68370534	68370725	+	11.16270	NA	Intergenic	Intergenic	14736	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_85435	chr6	12606123	12606277	+	11.16270	NA	Intergenic	Intergenic	-110837	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_57016	chr2	174058767	174058929	+	11.16270	NA	intron (NM_016653, intron 7 of 19)	intron (NM_016653, intron 7 of 19)	87916	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MLK7-AS1	-	MLK7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76392	chr4	101014771	101014879	+	11.16270	NA	Intergenic	Intergenic	96830	NM_145244	115265	Hs.480378	NM_145244	HPRD:09663	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
19-PTNLD28-TUMOR_peak_80993	chr5	81730687	81730829	+	11.16270	NA	Intergenic	L1PA2|LINE|L1	155477	NM_001017971	92270	Hs.729805	NM_001017971	HPRD:18710	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_93105	chr7	71870496	71870629	+	11.16270	NA	intron (NM_031468, intron 1 of 6)	intron (NM_031468, intron 1 of 6)	6798	NM_031468	83698	Hs.592750	NM_031468	HPRD:06209	CALN1	CABP8	calneuron 1	protein-coding
19-PTNLD28-TUMOR_peak_41600	chr17	41387271	41387441	+	11.16270	NA	Intergenic	Intergenic	-6294	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	ncRNA
19-PTNLD28-TUMOR_peak_62201	chr20	55299523	55299704	+	11.16270	NA	Intergenic	Intergenic	95255	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_55502	chr2	124782753	124782907	+	11.16270	NA	promoter-TSS (NM_130773)	promoter-TSS (NM_130773)	-34	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_93584	chr7	77619505	77619812	+	11.16270	NA	Intergenic	L1PBa1|LINE|L1	150211	NM_001127357	57157	Hs.203965	NM_020432	HPRD:15130	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_65382	chr22	37447671	37447807	+	11.16270	NA	promoter-TSS (NM_024681)	promoter-TSS (NM_024681)	-37	NM_024681	79734	Hs.517597	NM_024681	HPRD:07764	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_16576	chr11	1536834	1537003	+	11.16270	NA	Intergenic	CpG	-28909	NM_001172223	81532	Hs.370360	NM_053005		MOB2	HCCA2	MOB kinase activator 2	protein-coding
19-PTNLD28-TUMOR_peak_51149	chr2	11711370	11711611	+	11.16270	NA	intron (NM_148903, intron 4 of 9)	intron (NM_148903, intron 4 of 9)	28639	NM_033090	9687	Hs.467733	NM_014668	HPRD:13611	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_75832	chr4	78306676	78306816	+	11.16270	NA	Intergenic	Intergenic	-126161	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_91794	chr7	29234379	29234962	+	11.16270	NA	intron (NM_001293071, intron 1 of 11)	CpG	549	NM_001293071	1124	Hs.654611	NM_004067	HPRD:04173	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_9860	chr1	208714743	208715107	+	11.16270	NA	Intergenic	LTR16E2|LTR|ERVL	-297260	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_24608	chr12	55738027	55738318	+	11.16270	NA	Intergenic	L1PA2|LINE|L1	12687	NM_054104	254786	Hs.553653	NM_054104	HPRD:15057	OR6C3	OST709	olfactory receptor, family 6, subfamily C, member 3	protein-coding
19-PTNLD28-TUMOR_peak_58617	chr2	224641772	224642190	+	11.16270	NA	intron (NR_110905, intron 2 of 5)	AluSx1|SINE|Alu	60338	NR_110906	130340	Hs.632555	NM_178814	HPRD:16495	AP1S3	-	adaptor-related protein complex 1, sigma 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_59550	chr20	3232489	3232693	+	11.16270	NA	3' UTR (NM_001009984, exon 37 of 37)	3' UTR (NM_001009984, exon 37 of 37)	-12704	NM_001174089	83959	Hs.105607	NM_032034	HPRD:15392	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	solute carrier family 4, sodium borate transporter, member 11	protein-coding
19-PTNLD28-TUMOR_peak_32985	chr15	33747322	33747473	+	11.16270	NA	intron (NM_001243996, intron 1 of 102)	L2c|LINE|L2	144220	NM_001243996	6263	Hs.709373	NM_001036	HPRD:01620	RYR3	RYR-3	ryanodine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_81417	chr5	105334796	105334958	+	11.16270	NA	Intergenic	LTR14C|LTR|ERVK	899702	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_30204	chr14	50561175	50561332	+	11.16270	NA	Intergenic	AluJr|SINE|Alu	-1892	NM_001014830	196913	Hs.406934	NM_001014830	HPRD:18572	C14orf183	-	chromosome 14 open reading frame 183	protein-coding
19-PTNLD28-TUMOR_peak_11989	chr10	11128352	11128481	+	11.16270	NA	intron (NR_046108, intron 4 of 6)	intron (NR_046108, intron 4 of 6)	19035	NR_046108	439950	Hs.568157	NR_046108		CELF2-AS2	-	CELF2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_20503	chr11	88242149	88242449	+	11.16270	NA	exon (NM_000842, exon 9 of 9)	exon (NM_000842, exon 9 of 9)	4555	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_105847	chr9	123918881	123919008	+	11.16270	NA	intron (NM_007018, intron 25 of 41)	intron (NM_007018, intron 25 of 41)	45421	NM_016322	51552	Hs.371563	NM_016322	HPRD:06693	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_5493	chr1	111050706	111050887	+	11.16270	NA	Intergenic	Intergenic	11001	NM_005549	3744	Hs.248140	NM_005549	HPRD:03882	KCNA10	Kcn1|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_23219	chr12	14720352	14720605	+	11.16270	NA	promoter-TSS (NR_120465)	promoter-TSS (NR_120465)	-188	NR_120465	101928290	Hs.131933	NR_120465	ENSG00000256751	PLBD1-AS1	-	PLBD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8156	chr1	171372610	171372926	+	11.16270	NA	Intergenic	L1PB1|LINE|L1	64733	NR_002719	7151	Hs.661092	NR_002719		TOP1P1	-	topoisomerase (DNA) I pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_102358	chr9	19028994	19029084	+	11.16270	NA	intron (NM_001287049, intron 1 of 3)	intron (NM_001287049, intron 1 of 3)	4217	NM_001287050	158297	Hs.731593	NM_153707	HPRD:16676	FAM154A	C9orf138	family with sequence similarity 154, member A	protein-coding
19-PTNLD28-TUMOR_peak_97189	chr8	11816496	11816608	+	11.16270	NA	Intergenic	Intergenic	15556	NM_001033018	613210	Hs.558285	NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin, beta 136	protein-coding
19-PTNLD28-TUMOR_peak_49924	chr19	50626455	50626613	+	11.15668	NA	promoter-TSS (NR_024228).2	promoter-TSS (NR_024228).2	-83	NR_024224	100169953	Hs.723094	NR_024224		SNAR-A7	-	small ILF3/NF90-associated RNA A7	snRNA
19-PTNLD28-TUMOR_peak_26614	chr12	120427658	120427807	+	11.15158	NA	promoter-TSS (NM_207311)	promoter-TSS (NM_207311)	84	NM_207311	92558	Hs.369763	NM_207311	HPRD:14292	CCDC64	BICDR-1|H_267D11.1	coiled-coil domain containing 64	protein-coding
19-PTNLD28-TUMOR_peak_102041	chr9	4661321	4661445	+	11.15123	NA	promoter-TSS (NM_203453)	promoter-TSS (NM_203453)	-911	NM_203453	403313	Hs.107510	NM_203453	HPRD:17397	PPAPDC2	PDP1|PSDP|bA6J24.6	phosphatidic acid phosphatase type 2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_16981	chr11	8730654	8730823	+	11.15059	NA	intron (NM_139157, intron 10 of 18)	intron (NM_139157, intron 10 of 18)	23752	NR_002977	677826	Hs.745552	NR_002977		SNORA45B	ACA3-2|SNORA45	small nucleolar RNA, H/ACA box 45B	snoRNA
19-PTNLD28-TUMOR_peak_18329	chr11	45520288	45520402	+	11.14820	NA	Intergenic	L1ME1|LINE|L1	127397	NR_122071	399886	Hs.559970	NR_122071	HPRD:13453	LOC399886	-	uncharacterized LOC399886	ncRNA
19-PTNLD28-TUMOR_peak_91307	chr7	12537185	12537498	+	11.14820	NA	Intergenic	L1PA3|LINE|L1	-72862	NM_001112706	85477	Hs.633359	NM_033128	HPRD:11539	SCIN	-	scinderin	protein-coding
19-PTNLD28-TUMOR_peak_50208	chr19	53927022	53927146	+	11.14820	NA	Intergenic	Intergenic	-8143	NM_001289951	388561	Hs.433293	NM_001008401		ZNF761	ZNF468	zinc finger protein 761	protein-coding
19-PTNLD28-TUMOR_peak_34056	chr15	66365301	66365540	+	11.14820	NA	intron (NM_032445, intron 5 of 22)	intron (NM_032445, intron 5 of 22)	32849	NR_036196	100422905		NR_036196	miRBase:MI0015841	MIR4311	-	microRNA 4311	ncRNA
19-PTNLD28-TUMOR_peak_41135	chr17	34814858	34814961	+	11.14820	NA	Intergenic	AluSg|SINE|Alu	-6817	NM_001001417	414059	Hs.105891	NM_001001417	HPRD:11264	TBC1D3B	PRC17|TBC1D3I	TBC1 domain family, member 3B	protein-coding
19-PTNLD28-TUMOR_peak_100634	chr8	125908623	125908797	+	11.14820	NA	Intergenic	Intergenic	-45540	NR_027321	157381	Hs.638933	NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
19-PTNLD28-TUMOR_peak_26663	chr12	120821979	120822100	+	11.14820	NA	Intergenic	AluJr|SINE|Alu	-15056	NM_002442	4440	Hs.158311	NM_002442	HPRD:04509	MSI1	-	musashi RNA-binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47236	chr19	10712998	10713501	+	11.14820	NA	intron (NM_001145056, intron 1 of 21)	CpG	128	NM_001145056	57153	Hs.534560	NM_020428	HPRD:16198	SLC44A2	CTL2|PP1292	solute carrier family 44 (choline transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_58048	chr2	207858924	207859047	+	11.14820	NA	Intergenic	Intergenic	54707	NM_173077	130749	Hs.684103	NM_173077	HPRD:07098	CPO	-	carboxypeptidase O	protein-coding
19-PTNLD28-TUMOR_peak_62813	chr21	16665656	16665852	+	11.14820	NA	Intergenic	Intergenic	-228628	NM_003489	8204	Hs.155017	NM_003489	HPRD:03927	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_4869	chr1	92316913	92317095	+	11.14820	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	34832	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_29609	chr14	24846836	24847202	+	11.14820	NA	3' UTR (NM_001198965, exon 10 of 10)	3' UTR (NM_001198965, exon 10 of 10)	8660	NM_001288802	4776	Hs.77810	NM_004554	HPRD:09096	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	protein-coding
19-PTNLD28-TUMOR_peak_8954	chr1	189586122	189586335	+	11.14820	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	860531	NM_199051	339479	Hs.65765	NM_199051	HPRD:16782	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	bone morphogenetic protein/retinoic acid inducible neural-specific 3	protein-coding
19-PTNLD28-TUMOR_peak_79818	chr5	51125168	51125358	+	11.14820	NA	Intergenic	Intergenic	-446097	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
19-PTNLD28-TUMOR_peak_79063	chr5	15373422	15373649	+	11.14820	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-106866	NR_109944	101929454	Hs.453273	NR_109944		LOC101929454	-	uncharacterized LOC101929454	ncRNA
19-PTNLD28-TUMOR_peak_39870	chr17	5026206	5026726	+	11.14820	NA	promoter-TSS (NM_014519)	promoter-TSS (NM_014519)	-69	NM_014519	7775	Hs.279914	NM_014519	HPRD:15755	ZNF232	ZSCAN11	zinc finger protein 232	protein-coding
19-PTNLD28-TUMOR_peak_97831	chr8	27418435	27418663	+	11.14820	NA	Intergenic	Intergenic	49719	NR_106902	102465508		NR_106902		MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
19-PTNLD28-TUMOR_peak_104826	chr9	99482439	99482766	+	11.14820	NA	Intergenic	Intergenic	-5501	NR_026792	441455	Hs.229613	NR_026792		LOC441455	-	makorin ring finger protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_93010	chr7	67903040	67903319	+	11.14820	NA	Intergenic	Intergenic	417939	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_9968	chr1	212392229	212392500	+	11.14820	NA	Intergenic	Intergenic	-66515	NM_006243	5525	Hs.744012	NM_006243	HPRD:03384	PPP2R5A	B56A|PR61A	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
19-PTNLD28-TUMOR_peak_33958	chr15	64305977	64306179	+	11.14769	NA	intron (NM_014326, intron 2 of 11)	intron (NM_014326, intron 2 of 11)	32443	NM_014326	23604	Hs.237886	NM_014326	HPRD:09905	DAPK2	DRP-1|DRP1	death-associated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_35203	chr15	90865900	90866010	+	11.14362	NA	Intergenic	AluJr|SINE|Alu	26724	NR_028287	23766	Hs.592014	NR_028287		GABARAPL3	ATG8D	GABA(A) receptors associated protein like 3, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46497	chr19	588248	588430	+	11.14362	NA	Intergenic	CpG	-1554	NM_001194	610	Hs.124161	NM_001194	HPRD:07213	HCN2	BCNG-2|BCNG2|HAC-1	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	protein-coding
19-PTNLD28-TUMOR_peak_49503	chr19	47046073	47046221	+	11.14362	NA	intron (NM_001205281, intron 1 of 3)	intron (NM_001205281, intron 1 of 3)	-46978	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
19-PTNLD28-TUMOR_peak_28044	chr13	44453126	44453245	+	11.14362	NA	promoter-TSS (NM_001128303)	promoter-TSS (NM_001128303)	-235	NM_001128303	144811	Hs.210586	NM_153218	HPRD:08793	LACC1	C13orf31	laccase (multicopper oxidoreductase) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_26030	chr12	106618028	106618130	+	11.14362	NA	Intergenic	Intergenic	23634	NM_006825	10970	Hs.74368	NM_006825	HPRD:16717	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_51647	chr2	26235468	26235638	+	11.14362	NA	Intergenic	Intergenic	-21176	NM_016131	10890	Hs.467960	NM_016131	HPRD:06692	RAB10	-	RAB10, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_48526	chr19	33496472	33496644	+	11.14362	NA	intron (NM_033103, intron 7 of 14)	intron (NM_033103, intron 7 of 14)	33435	NM_001300978	91442	Hs.579899	NM_152266		C19orf40	FAAP24	chromosome 19 open reading frame 40	protein-coding
19-PTNLD28-TUMOR_peak_46528	chr19	958930	959160	+	11.14362	NA	intron (NM_005224, intron 3 of 8)	Tigger3a|DNA|TcMar-Tigger	-25283	NM_024100	57418	Hs.325321	NM_024100	HPRD:18296	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
19-PTNLD28-TUMOR_peak_51052	chr2	10310491	10310696	+	11.14362	NA	intron (NM_182626, intron 2 of 2)	intron (NM_182626, intron 2 of 2)	22204	NR_036222	100422929		NR_036222	miRBase:MI0015868	MIR4261	-	microRNA 4261	ncRNA
19-PTNLD28-TUMOR_peak_96411	chr7	151373956	151374159	+	11.14362	NA	intron (NM_001040633, intron 3 of 15)	MLT1C|LTR|ERVL-MaLR	-44713	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_79002	chr5	14039286	14039491	+	11.14283	NA	Intergenic	L2a|LINE|L2	-94799	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_36135	chr16	8928738	8928856	+	11.14280	NA	intron (NM_000303, intron 7 of 7)	HERVH-int|LTR|ERV1	26870	NM_001278262	23589	Hs.632184	NM_014316	HPRD:08515	CARHSP1	CRHSP-24|CSDC1	calcium regulated heat stable protein 1, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_79525	chr5	36739902	36740004	+	11.14280	NA	Intergenic	L2c|LINE|L2	133496	NM_001289940	6507	Hs.481918	NM_004172	HPRD:02523	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_82235	chr5	133781709	133782012	+	11.14280	NA	Intergenic	Intergenic	-11122	NR_105044	102546229		NR_105044		LOC102546229	-	uncharacterized LOC102546229	ncRNA
19-PTNLD28-TUMOR_peak_14035	chr10	71152357	71152504	+	11.14280	NA	intron (NM_033497, intron 18 of 20)	intron (NM_033497, intron 18 of 20)	24244	NM_001057	6865	Hs.88372	NM_001057	HPRD:01207	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_78976	chr5	13601399	13601526	+	11.14280	NA	Intergenic	Intergenic	343127	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_63844	chr21	44698423	44698524	+	11.14280	NA	Intergenic	MIR|SINE|MIR	53446	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
19-PTNLD28-TUMOR_peak_26020	chr12	106506835	106507038	+	11.14280	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	26875	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_20190	chr11	76838098	76838576	+	11.14280	NA	promoter-TSS (NM_001127179)	promoter-TSS (NM_001127179)	-973	NM_000260	4647	Hs.370421	NM_000260	HPRD:02043	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
19-PTNLD28-TUMOR_peak_88729	chr6	90232666	90232775	+	11.14280	NA	intron (NM_001242813, intron 1 of 14)	intron (NM_001242813, intron 1 of 14)	-39317	NM_001242811	22881	Hs.702213	NM_014942	HPRD:09798	ANKRD6	-	ankyrin repeat domain 6	protein-coding
19-PTNLD28-TUMOR_peak_104447	chr9	91615971	91616115	+	11.14280	NA	5' UTR (NM_005226, exon 2 of 2)	5' UTR (NM_005226, exon 2 of 2)	9719	NM_005226	1903	Hs.585118	NM_005226	HPRD:03572	S1PR3	EDG-3|EDG3|LPB3|S1P3	sphingosine-1-phosphate receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_16440	chr11	174484	174602	+	11.13760	NA	Intergenic	Intergenic	-18537	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	secretoglobin, family 1C, member 1-like	protein-coding
19-PTNLD28-TUMOR_peak_84602	chr5	180644563	180644710	+	11.13696	NA	Intergenic	CpG	4997	NR_039781	100616342		NR_039781	miRBase:MI0017265	MIR4638	-	microRNA 4638	ncRNA
19-PTNLD28-TUMOR_peak_106782	chr9	139742267	139742457	+	11.13408	NA	promoter-TSS (NM_001287343)	promoter-TSS (NM_001287343)	-906	NM_014172	29085	Hs.409834	NM_014172	HPRD:17849	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP14	phosphohistidine phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_39530	chr16	90110602	90110817	+	11.13097	NA	3' UTR (NM_001481, exon 11 of 11)	3' UTR (NM_001481, exon 11 of 11)	3324	NR_027335	100130015	Hs.431792	NR_027335	ENSG00000222019	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66035	chr22	47225055	47225209	+	11.13046	NA	intron (NR_104292, intron 5 of 13)	intron (NR_104292, intron 5 of 13)	55308	NM_001284305	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_93309	chr7	73994446	73994628	+	11.13046	NA	intron (NM_005685, intron 22 of 26)	AluJo|SINE|Alu	-77454	NM_032999	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_1194	chr1	19228950	19229157	+	11.13046	NA	5' UTR (NM_003748, exon 1 of 15)	5' UTR (NM_003748, exon 1 of 15)	240	NM_170726	8659	Hs.77448	NM_003748	HPRD:06009	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_56627	chr2	161349245	161349828	+	11.13046	NA	intron (NM_016836, intron 1 of 13)	CpG	782	NM_016836	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58321	chr2	217557188	217557351	+	11.13046	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	3003	NM_000599	3488	Hs.607212	NM_000599	HPRD:00901	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_81452	chr5	107009409	107009571	+	11.12951	NA	Intergenic	Intergenic	-2894	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_10483	chr1	226311393	226311564	+	11.12951	NA	Intergenic	Intergenic	61050	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_26409	chr12	113623200	113623655	+	11.12892	NA	promoter-TSS (NM_001111322)	promoter-TSS (NM_001111322)	96	NM_032848	84934	Hs.524762	NM_032848	HPRD:08606	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
19-PTNLD28-TUMOR_peak_16641	chr11	2208069	2208314	+	11.12750	NA	Intergenic	Intergenic	13898	NR_039834	100616126		NR_039834	miRBase:MI0017318	MIR4686	-	microRNA 4686	ncRNA
19-PTNLD28-TUMOR_peak_68832	chr3	66007661	66007762	+	11.12750	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	16798	NM_015520	9223	Hs.476636	NM_004742	HPRD:04020	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33960	chr15	64338485	64338843	+	11.12750	NA	promoter-TSS (NM_014326)	promoter-TSS (NM_014326)	-143	NM_014326	23604	Hs.237886	NM_014326	HPRD:09905	DAPK2	DRP-1|DRP1	death-associated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_43832	chr17	77714264	77714427	+	11.12750	NA	intron (NM_178543, intron 5 of 5)	intron (NM_178543, intron 5 of 5)	9480	NM_178543	339221	Hs.114084	NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_15972	chr10	122129337	122129756	+	11.12750	NA	Intergenic	MER34A1|LTR|ERV1	-86920	NM_001030059	196051	Hs.40479	NM_001030059	HPRD:18745	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_95678	chr7	137758901	137759186	+	11.12750	NA	Intergenic	LOR1b|LTR|ERV1	-2135	NM_001190907	6718	Hs.201667	NM_005989	HPRD:07263	AKR1D1	3o5bred|CBAS2|SRD5B1	aldo-keto reductase family 1, member D1	protein-coding
19-PTNLD28-TUMOR_peak_96066	chr7	143332983	143333243	+	11.12750	NA	intron (NM_173678, intron 1 of 6)	LTR19B|LTR|ERV1	11626	NR_110549	653691	Hs.632030	NR_110549		FAM115D	FAM139B	family with sequence similarity 139, member B	pseudo
19-PTNLD28-TUMOR_peak_54037	chr2	89572602	89572845	+	11.12750	NA	Intergenic	Intergenic	460839	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_90891	chr7	2272305	2272811	+	11.12750	NA	promoter-TSS (NM_003550)	promoter-TSS (NM_003550)	25	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_99811	chr8	102550523	102550636	+	11.12750	NA	intron (NM_024915, intron 1 of 15)	intron (NM_024915, intron 1 of 15)	45911	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_92267	chr7	44217525	44217783	+	11.12750	NA	intron (NM_000162, intron 1 of 9)	ERV3-16A3_I-int|LTR|ERVL	11368	NM_000162	2645	Hs.1270	NM_000162	HPRD:00680	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase (hexokinase 4)	protein-coding
19-PTNLD28-TUMOR_peak_46500	chr19	639621	639960	+	11.12750	NA	promoter-TSS (NM_020637)	promoter-TSS (NM_020637)	-105	NM_001300812	27006	Hs.248087	NM_020637	HPRD:05784	FGF22	-	fibroblast growth factor 22	protein-coding
19-PTNLD28-TUMOR_peak_11227	chr1	238837682	238837936	+	11.12750	NA	Intergenic	ERVL-E-int|LTR|ERVL	-188492	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_29984	chr14	38724591	38724863	+	11.12750	NA	exon (NM_175060, exon 1 of 1)	exon (NM_175060, exon 1 of 1)	848	NM_175060	161198	Hs.525307	NM_175060	HPRD:10711	CLEC14A	C14orf27|CEG1|EGFR-5	C-type lectin domain family 14, member A	protein-coding
19-PTNLD28-TUMOR_peak_86625	chr6	31543226	31543478	+	11.12678	NA	promoter-TSS (NM_000594).3	promoter-TSS (NM_000594).3	8	NM_000594	7124	Hs.241570	NM_000594	HPRD:01855	TNF	DIF|TNF-alpha|TNFA|TNFSF2	tumor necrosis factor	protein-coding
19-PTNLD28-TUMOR_peak_93470	chr7	75889192	75889359	+	11.12678	NA	exon (NM_001110199, exon 4 of 15)	exon (NM_001110199, exon 4 of 15)	-42600	NM_001540	3315	Hs.520973	NM_001540	HPRD:09076	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock 27kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101384	chr8	141248468	141248691	+	11.12678	NA	intron (NM_031466, intron 16 of 22)	intron (NM_031466, intron 16 of 22)	219282	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_55087	chr2	114008717	114008879	+	11.12678	NA	intron (NR_015377, intron 2 of 5)	intron (NR_015377, intron 2 of 5)	14952	NR_015377	654433	Hs.656660	NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10722	chr1	229357037	229357165	+	11.12678	NA	Intergenic	Intergenic	-49708	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_79856	chr5	52777849	52778014	+	11.12678	NA	intron (NM_013409, intron 1 of 5)	CpG	1667	NM_013409	10468	Hs.9914	NM_006350	HPRD:00641	FST	FS	follistatin	protein-coding
19-PTNLD28-TUMOR_peak_24301	chr12	52468584	52468984	+	11.12393	NA	intron (NM_001098673, intron 3 of 3)	AluJb|SINE|Alu	-4696	NR_120437	26628	Hs.524431	NR_120437		OR7E47P	OR7E141	olfactory receptor, family 7, subfamily E, member 47 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_72467	chr3	176915526	176915791	+	11.12393	NA	promoter-TSS (NM_024665)	promoter-TSS (NM_024665)	-610	NM_024665	79718	Hs.715026	NM_024665	HPRD:15476	TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_18360	chr11	45869320	45869765	+	11.12393	NA	intron (NM_021117, intron 1 of 11)	MIRc|SINE|MIR	585	NM_021117	1408	Hs.532491	NM_021117	HPRD:07226	CRY2	HCRY2|PHLL2	cryptochrome circadian clock 2	protein-coding
19-PTNLD28-TUMOR_peak_6439	chr1	147013763	147013880	+	11.11779	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	550	NM_004326	607	Hs.415209	NM_004326	HPRD:04000	BCL9	LGS	B-cell CLL/lymphoma 9	protein-coding
19-PTNLD28-TUMOR_peak_50392	chr19	56004709	56004958	+	11.11743	NA	intron (NM_001195267, intron 6 of 12)	MIRb|SINE|MIR	4963	NM_001195267	284297	Hs.554182	NM_182571	HPRD:11444	SSC5D	-	scavenger receptor cysteine rich family, 5 domains	protein-coding
19-PTNLD28-TUMOR_peak_65586	chr22	39897064	39897299	+	11.11660	NA	Intergenic	L2|LINE|L2	-1103	NM_019008	54471	Hs.728085	NM_019008	HPRD:13371	MIEF1	HSU79252|MID51|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_59250	chr2	241391959	241392253	+	11.11660	NA	intron (NR_024014, intron 1 of 1)	CpG	-3312	NR_029702	406941		NR_029702		MIR149	MIRN149	microRNA 149	ncRNA
19-PTNLD28-TUMOR_peak_26988	chr12	125117080	125117427	+	11.11580	NA	Intergenic	Intergenic	-65243	NM_001206654	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_63534	chr21	40177031	40177219	+	11.11580	NA	promoter-TSS (NM_005239)	promoter-TSS (NM_005239)	-106	NM_001256295	2114	Hs.644231	NM_005239	HPRD:01263	ETS2	ETS2IT1	v-ets avian erythroblastosis virus E26 oncogene homolog 2	protein-coding
19-PTNLD28-TUMOR_peak_50675	chr1_gl000192_random	336109	336274	+	11.11462	NA	intron (NR_103556, intron 6 of 45)	intron (NR_103556, intron 6 of 45)	71319	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_68169	chr3	49943465	49943703	+	11.11229	NA	Intergenic	Intergenic	-2278	NM_002447	4486	Hs.517973	NM_002447	HPRD:02545	MST1R	CD136|CDw136|PTK8|RON	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_101720	chr8	145202011	145202155	+	11.10812	NA	promoter-TSS (NM_001099280)	promoter-TSS (NM_001099280)	-836	NM_001099281	727957	Hs.443139	NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat-like repeat family member 1	protein-coding
19-PTNLD28-TUMOR_peak_7109	chr1	154786125	154786323	+	11.10812	NA	intron (NM_002249, intron 2 of 7)	intron (NM_002249, intron 2 of 7)	46114	NM_170782	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_82266	chr5	134074844	134075075	+	11.10716	NA	intron (NM_001745, intron 1 of 3)	intron (NM_001745, intron 1 of 3)	789	NM_001745	819	Hs.529846	NM_001745	HPRD:03073	CAMLG	CAML	calcium modulating ligand	protein-coding
19-PTNLD28-TUMOR_peak_49720	chr19	49061769	49061885	+	11.10716	NA	intron (NM_177973, intron 1 of 6)	intron (NM_177973, intron 1 of 6)	6398	NM_177973	6820	Hs.369331	NM_004605	HPRD:04991	SULT2B1	HSST2	sulfotransferase family, cytosolic, 2B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_104302	chr9	89215314	89215497	+	11.10225	NA	Intergenic	Intergenic	-246003	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_39053	chr16	84036747	84036915	+	11.10225	NA	TTS (NM_019065)	TTS (NM_019065)	34594	NM_019065	54550	Hs.140950	NM_019065	HPRD:13263	NECAB2	EFCBP2	N-terminal EF-hand calcium binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_42108	chr17	47301190	47301402	+	11.10225	NA	TTS (NM_016428)	TTS (NM_016428)	6832	NM_001143804	162466	Hs.405607	NM_178500	HPRD:17847	PHOSPHO1	-	phosphatase, orphan 1	protein-coding
19-PTNLD28-TUMOR_peak_16374	chr10	134913512	134913660	+	11.09889	NA	intron (NM_001083909, intron 4 of 6)	CpG	-2164	NM_001291085	84435	Hs.435183	NM_032422	HPRD:17058	GPR123	-	G protein-coupled receptor 123	protein-coding
19-PTNLD28-TUMOR_peak_80571	chr5	71662279	71662506	+	11.09889	NA	Intergenic	Intergenic	46198	NM_001284404	79810	Hs.126906	NM_024754	HPRD:15193	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
19-PTNLD28-TUMOR_peak_48022	chr19	18279038	18279222	+	11.09889	NA	intron (NR_073517, intron 13 of 15)	intron (NR_073517, intron 13 of 15)	-5460	NM_006332	10437	Hs.14623	NM_006332	HPRD:05234	IFI30	GILT|IFI-30|IP30	interferon, gamma-inducible protein 30	protein-coding
19-PTNLD28-TUMOR_peak_82979	chr5	145989515	145989628	+	11.09889	NA	intron (NR_073526, intron 6 of 8)	L1HS|LINE|L1	-93895	NM_194251	134391	Hs.483732	NM_194251		GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
19-PTNLD28-TUMOR_peak_81802	chr5	122242601	122242725	+	11.09889	NA	intron (NM_014035, intron 1 of 6)	intron (NM_014035, intron 1 of 6)	61503	NM_014035	28966	Hs.483200	NM_014035	HPRD:15413	SNX24	PRO1284	sorting nexin 24	protein-coding
19-PTNLD28-TUMOR_peak_835	chr1	12251684	12251979	+	11.09889	NA	promoter-TSS (NR_039775)	promoter-TSS (NR_039775)	61	NR_039775	100616438		NR_039775		MIR4632	-	microRNA 4632	ncRNA
19-PTNLD28-TUMOR_peak_100346	chr8	120235442	120235580	+	11.09889	NA	intron (NM_052886, intron 3 of 4)	intron (NM_052886, intron 3 of 4)	14901	NM_052886	114569	Hs.201083	NM_052886	HPRD:14351	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_21804	chr11	123349164	123349268	+	11.09889	NA	Intergenic	Intergenic	-47128	NM_020716	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_1474	chr1	23946092	23946462	+	11.09889	NA	Intergenic	CpG	-7547	NR_027042	259283	Hs.523369	NR_027042	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
19-PTNLD28-TUMOR_peak_53197	chr2	66786914	66787093	+	11.09767	NA	intron (NM_002398, intron 9 of 12)	AluJb|SINE|Alu	-14159	NR_110156	100507073	Hs.667940	NR_110156		LOC100507073	-	uncharacterized LOC100507073	ncRNA
19-PTNLD28-TUMOR_peak_12620	chr10	28876912	28877191	+	11.09767	NA	intron (NM_100264, intron 4 of 13)	intron (NM_100264, intron 4 of 13)	41726	NR_049851	100847088		NR_049851		MIR5586	-	microRNA 5586	ncRNA
19-PTNLD28-TUMOR_peak_55518	chr2	126941049	126941162	+	11.09767	NA	Intergenic	L1HS|LINE|L1	-472406	NM_001256584	2995	Hs.59138	NM_002101	HPRD:00193	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
19-PTNLD28-TUMOR_peak_102357	chr9	18985550	18985760	+	11.09767	NA	intron (NM_001287049, intron 1 of 3)	intron (NM_001287049, intron 1 of 3)	47601	NM_001287050	158297	Hs.731593	NM_153707	HPRD:16676	FAM154A	C9orf138	family with sequence similarity 154, member A	protein-coding
19-PTNLD28-TUMOR_peak_80560	chr5	71462649	71462789	+	11.09767	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	-2575	NR_039967	100616377		NR_039967		MIR4803	-	microRNA 4803	ncRNA
19-PTNLD28-TUMOR_peak_34332	chr15	71428847	71429005	+	11.09767	NA	Intergenic	Intergenic	-4862	NM_024817	79875	Hs.387057	NM_024817	HPRD:07835	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_69362	chr3	97700878	97701079	+	11.09767	NA	Intergenic	Intergenic	-9683	NM_032778	84864	Hs.570562	NM_032778	HPRD:17575	MINA	MDIG|MINA53|NO52|ROX	MYC induced nuclear antigen	protein-coding
19-PTNLD28-TUMOR_peak_20278	chr11	78774328	78774481	+	11.09767	NA	intron (NM_001098816, intron 6 of 33)	intron (NM_001098816, intron 6 of 33)	338749	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_3964	chr1	62220397	62220511	+	11.09767	NA	intron (NM_176877, intron 1 of 42)	intron (NM_176877, intron 1 of 42)	12305	NM_176877	10207	Hs.478125	NM_005799	HPRD:04434	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_82056	chr5	130976366	130976475	+	11.09767	NA	TTS (NM_133372)	TTS (NM_133372)	-5491	NM_001164390	51735	Hs.483329	NM_016340	HPRD:11483	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
19-PTNLD28-TUMOR_peak_35419	chr15	99143576	99143919	+	11.09767	NA	Intergenic	Intergenic	-48021	NM_000875	3480	Hs.643120	NM_000875	HPRD:00932	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin-like growth factor 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_38680	chr16	73091524	73091750	+	11.09767	NA	intron (NM_001164766, intron 1 of 8)	CpG	897	NM_001164766	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_15466	chr10	105836670	105836938	+	11.09767	NA	intron (NM_000494, intron 4 of 55)	intron (NM_000494, intron 4 of 55)	8834	NM_000494	1308	Hs.117938	NM_000494	HPRD:00223	COL17A1	BA16H23.2|BP180|BPA-2|BPAG2|LAD-1	collagen, type XVII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_44654	chr18	12391797	12391901	+	11.09767	NA	Intergenic	Intergenic	-14574	NM_006796	10939	Hs.726355	NM_006796	HPRD:05205	AFG3L2	SCA28|SPAX5	AFG3-like AAA ATPase 2	protein-coding
19-PTNLD28-TUMOR_peak_13518	chr10	49900226	49900570	+	11.09767	NA	intron (NM_020945, intron 1 of 61)	intron (NM_020945, intron 1 of 61)	6880	NM_020945	57705	Hs.287379	NM_020945	ENSG00000128815	WDFY4	C10orf64	WDFY family member 4	protein-coding
19-PTNLD28-TUMOR_peak_23192	chr12	13880664	13880960	+	11.09767	NA	intron (NM_000834, intron 3 of 12)	intron (NM_000834, intron 3 of 12)	252210	NM_000834	2904	Hs.654430	NM_000834		GRIN2B	GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	protein-coding
19-PTNLD28-TUMOR_peak_28343	chr13	53524239	53524356	+	11.09767	NA	Intergenic	Intergenic	-78579	NM_006418	10562	Hs.508113	NM_006418	HPRD:06580	OLFM4	GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD	olfactomedin 4	protein-coding
19-PTNLD28-TUMOR_peak_50717	chr2	133787	134183	+	11.09767	NA	Intergenic	LTR43B|LTR|ERV1	-87397	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_98686	chr8	49711923	49712064	+	11.09767	NA	Intergenic	L1PA2|LINE|L1	-64123	NR_024605	79645	Hs.23245	NM_024593	HPRD:08565	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_7885	chr1	165198764	165198890	+	11.09767	NA	intron (NM_177398, intron 4 of 8)	MIR3|SINE|MIR	126651	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_17169	chr11	11609825	11610071	+	11.09767	NA	intron (NM_198516, intron 1 of 10)	GA-rich|Low_complexity|Low_complexity	33613	NM_198516	374378	Hs.655152	NM_198516	HPRD:13564	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
19-PTNLD28-TUMOR_peak_92907	chr7	65495958	65496121	+	11.09767	NA	Intergenic	Intergenic	-44737	NM_000048	435	Hs.632015	NM_000048	HPRD:01948	ASL	ASAL	argininosuccinate lyase	protein-coding
19-PTNLD28-TUMOR_peak_21696	chr11	121462258	121462395	+	11.09767	NA	intron (NM_003105, intron 31 of 47)	intron (NM_003105, intron 31 of 47)	139414	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_11182	chr1	237194836	237195030	+	11.09767	NA	Intergenic	LTR78|LTR|ERV1	-10769	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_93061	chr7	69966489	69966607	+	11.09767	NA	intron (NM_001127231, intron 5 of 17)	intron (NM_001127231, intron 5 of 17)	-630975	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_39401	chr16	88870892	88871158	+	11.09705	NA	exon (NM_030928, exon 2 of 10)	exon (NM_030928, exon 2 of 10)	839	NM_030928	81620	Hs.122908	NM_030928	HPRD:06900	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
19-PTNLD28-TUMOR_peak_26891	chr12	123465113	123465662	+	11.09705	NA	TTS (NM_024623)	TTS (NM_024623)	780	NM_001002252	51329	Hs.103561	NM_016638	HPRD:09640	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_19296	chr11	65354800	65355040	+	11.09705	NA	intron (NM_001099409, intron 12 of 18)	intron (NM_001099409, intron 12 of 18)	8547	NM_033455	10089	Hs.175218	NM_005714	HPRD:06804	KCNK7	K2p7.1|TWIK3	potassium channel, subfamily K, member 7	protein-coding
19-PTNLD28-TUMOR_peak_62030	chr20	52061914	52062121	+	11.09705	NA	intron (NM_173485, intron 2 of 2)	intron (NM_173485, intron 2 of 2)	-107292	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_47657	chr19	14638450	14638637	+	11.09552	NA	Intergenic	Intergenic	-1812	NR_030369	693224		NR_030369	miRBase:MI0003654	MIR639	MIRN639|hsa-mir-639	microRNA 639	ncRNA
19-PTNLD28-TUMOR_peak_47560	chr19	13945202	13945415	+	11.09269	NA	TTS (NR_036515)	TTS (NR_036515)	1795	NR_036515	284454	Hs.436426	NR_036515	ENSG00000267519	LOC284454	-	uncharacterized LOC284454	ncRNA
19-PTNLD28-TUMOR_peak_9932	chr1	211725107	211725254	+	11.09198	NA	Intergenic	Intergenic	26919	NM_021194	7779	Hs.519469	NM_021194		SLC30A1	ZNT1|ZRC1	solute carrier family 30 (zinc transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_47775	chr19	16136626	16136772	+	11.09198	NA	non-coding (NR_026828, exon 9 of 9)	non-coding (NR_026828, exon 9 of 9)	-7824	NR_024335	148231	Hs.631621	NR_024335	HPRD:08056	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
19-PTNLD28-TUMOR_peak_11609	chr10	592929	593201	+	11.09198	NA	intron (NM_014974, intron 1 of 36)	Charlie1|DNA|hAT-Charlie	94653	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_85175	chr6	7561999	7562145	+	11.09198	NA	intron (NM_001008844, intron 4 of 23)	intron (NM_001008844, intron 4 of 23)	20202	NM_004415	1832	Hs.519873	NM_004415	HPRD:00513	DSP	DP|DPI|DPII	desmoplakin	protein-coding
19-PTNLD28-TUMOR_peak_16269	chr10	131128051	131128238	+	11.09198	NA	Intergenic	AluSz|SINE|Alu	-137310	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_85844	chr6	20529352	20529541	+	11.09198	NA	Intergenic	AluSx1|SINE|Alu	-5242	NM_017774	54901	Hs.657604	NM_017774	HPRD:13022	CDKAL1	-	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_82769	chr5	141213008	141213188	+	11.09198	NA	Intergenic	AluJo|SINE|Alu	32669	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_14484	chr10	79649187	79649366	+	11.09198	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	37072	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_21238	chr11	113318785	113319278	+	11.09198	NA	intron (NM_016574, intron 1 of 6)	intron (NM_016574, intron 1 of 6)	1779	NR_036183	100422855		NR_036183	miRBase:MI0015828	MIR4301	-	microRNA 4301	ncRNA
19-PTNLD28-TUMOR_peak_104761	chr9	97810735	97810887	+	11.09198	NA	intron (NM_032823, intron 11 of 14)	CpG	-16821	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_24414	chr12	53289109	53290370	+	11.09130	NA	Intergenic	Intergenic	9129	NM_002273	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_4283	chr1	68808438	68808660	+	11.09031	NA	Intergenic	Intergenic	107093	NM_000329	6121	Hs.2133	NM_000329	HPRD:01569	RPE65	BCO3|LCA2|RP20|mRPE65|rd12|sRPE65	retinal pigment epithelium-specific protein 65kDa	protein-coding
19-PTNLD28-TUMOR_peak_38429	chr16	68564322	68564448	+	11.09031	NA	Intergenic	Intergenic	-9276	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_3905	chr1	60955496	60955630	+	11.09031	NA	Intergenic	L1M3de|LINE|L1	335693	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_29368	chr14	21458502	21458655	+	11.08737	NA	intron (NM_001029991, intron 2 of 12)	CpG	613	NM_001029991	64745	Hs.512693	NM_022734	HPRD:13379	METTL17	METT11D1	methyltransferase like 17	protein-coding
19-PTNLD28-TUMOR_peak_47013	chr19	7994211	7994533	+	11.08708	NA	intron (NM_006351, intron 10 of 12)	intron (NM_006351, intron 10 of 12)	-3321	NM_206833	404217	Hs.657978	NM_206833	HPRD:13097	CTXN1	CTXN	cortexin 1	protein-coding
19-PTNLD28-TUMOR_peak_30508	chr14	57857667	57858208	+	11.08599	NA	exon (NM_001011713, exon 2 of 5)	exon (NM_001011713, exon 2 of 5)	666	NM_001011713	122830	Hs.165465	NM_001011713		NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_61474	chr20	45619515	45619764	+	11.08599	NA	intron (NM_005244, intron 2 of 15)	intron (NM_005244, intron 2 of 15)	96376	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_3210	chr1	46668704	46669069	+	11.08599	NA	promoter-TSS (NM_001013615)	promoter-TSS (NM_001013615)	-120	NM_001013615	541468	Hs.568642	NM_001013615	HPRD:18478	LURAP1	C1orf190|LRAP35a|LRP35A	leucine rich adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_14478	chr10	79631901	79632247	+	11.08444	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	54274	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_45374	chr18	39995157	39995278	+	11.08397	NA	intron (NR_046456, intron 5 of 7)	intron (NR_046456, intron 5 of 7)	228584	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_7243	chr1	155910605	155910746	+	11.08397	NA	promoter-TSS (NM_181885)	promoter-TSS (NM_181885)	-805	NM_181885	339403	Hs.449914	NM_181885	HPRD:16421	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin/insulin-like family peptide receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_86469	chr6	30464266	30464502	+	11.07801	NA	Intergenic	Intergenic	7201	NM_005516	3133	Hs.650174	NM_005516	HPRD:00877	HLA-E	EA1.2|EA2.1|HLA-6.2|MHC|QA1	major histocompatibility complex, class I, E	protein-coding
19-PTNLD28-TUMOR_peak_33580	chr15	52029824	52029958	+	11.07801	NA	5' UTR (NM_153374, exon 1 of 3)	5' UTR (NM_153374, exon 1 of 3)	429	NM_153374	256586	Hs.603629	NM_153374	HPRD:17531	LYSMD2	-	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_22283	chr11	133705019	133705313	+	11.07801	NA	Intergenic	Intergenic	10267	NM_174927	219938	Hs.97541	NM_174927	HPRD:11594	SPATA19	CT132|SPAS1|spergen1	spermatogenesis associated 19	protein-coding
19-PTNLD28-TUMOR_peak_191	chr1	1900599	1900883	+	11.07801	NA	intron (NM_001080484, intron 10 of 17)	(CAGCC)n|Simple_repeat|Simple_repeat	34535	NM_001080484	85452	Hs.232092	NM_001003808		KIAA1751	C1orf222	KIAA1751	protein-coding
19-PTNLD28-TUMOR_peak_97100	chr8	9912174	9912541	+	11.07801	NA	intron (NM_012331, intron 1 of 5)	CpG	578	NM_001135670	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_25614	chr12	94198244	94198453	+	11.07801	NA	intron (NM_003805, intron 2 of 2)	intron (NM_003805, intron 2 of 2)	-66749	NR_110092	101928731	Hs.659971	NR_110092		LOC101928731	-	uncharacterized LOC101928731	ncRNA
19-PTNLD28-TUMOR_peak_34948	chr15	84749530	84749739	+	11.07801	NA	intron (NR_036652, intron 1 of 9)	intron (NR_036652, intron 1 of 9)	695	NR_036652	648809	Hs.585157	NR_036652		EFTUD1P1	FAM42B|HsT19321	elongation factor Tu GTP binding domain containing 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_28550	chr13	78083541	78083684	+	11.07801	NA	Intergenic	Intergenic	-26197	NM_144777	8796	Hs.534699	NM_003843	HPRD:09161	SCEL	-	sciellin	protein-coding
19-PTNLD28-TUMOR_peak_17383	chr11	14996410	14996614	+	11.07801	NA	Intergenic	Intergenic	-2680	NM_001033952	796	Hs.37058	NM_001741	HPRD:00238	CALCA	CALC1|CGRP|CGRP-I|CGRP1|CT|KC	calcitonin-related polypeptide alpha	protein-coding
19-PTNLD28-TUMOR_peak_80119	chr5	59095320	59095512	+	11.07801	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-30978	NM_001197218	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_2676	chr1	40167329	40167461	+	11.07801	NA	Intergenic	Intergenic	-10013	NM_016257	51440	Hs.743975	NM_016257	HPRD:17113	HPCAL4	HLP4	hippocalcin like 4	protein-coding
19-PTNLD28-TUMOR_peak_17726	chr11	27413285	27413482	+	11.07801	NA	intron (NM_018490, intron 3 of 17)	intron (NM_018490, intron 3 of 17)	-28588	NM_080654	91057	Hs.143733	NM_030771	HPRD:14868	CCDC34	NY-REN-41|RAMA3	coiled-coil domain containing 34	protein-coding
19-PTNLD28-TUMOR_peak_14346	chr10	75631821	75631946	+	11.07801	NA	intron (NM_172171, intron 2 of 20)	intron (NM_172171, intron 2 of 20)	2466	NM_001222	818	Hs.523045	NM_001222	HPRD:03672	CAMK2G	CAMK|CAMK-II|CAMKG	calcium/calmodulin-dependent protein kinase II gamma	protein-coding
19-PTNLD28-TUMOR_peak_38422	chr16	68513285	68513523	+	11.07801	NA	Intergenic	Intergenic	-30995	NM_018667	55512	Hs.368421	NM_018667	HPRD:16154	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	protein-coding
19-PTNLD28-TUMOR_peak_60444	chr20	30398133	30398322	+	11.07801	NA	Intergenic	Intergenic	-8951	NM_033118	85366	Hs.86092	NM_033118	HPRD:05953	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_8512	chr1	179144787	179144962	+	11.07801	NA	intron (NM_001168237, intron 1 of 12)	intron (NM_001168237, intron 1 of 12)	-32650	NM_001136000	27	Hs.159472	NM_005158	HPRD:01259	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_34997	chr15	85442127	85442323	+	11.07801	NA	intron (NM_001287761, intron 5 of 14)	L1MEc|LINE|L1	14333	NM_001287762	9154	Hs.459187	NM_004213	HPRD:07068	SLC28A1	CNT1|HCNT1	solute carrier family 28 (concentrative nucleoside transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_67762	chr3	43327741	43328083	+	11.07801	NA	promoter-TSS (NM_001100594)	promoter-TSS (NM_001100594)	-92	NM_017719	54861	Hs.476052	NM_017719	HPRD:18082	SNRK	HSNFRK	SNF related kinase	protein-coding
19-PTNLD28-TUMOR_peak_27373	chr13	21039644	21039946	+	11.07801	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-31810	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_22811	chr12	6934873	6934999	+	11.07109	NA	intron (NM_019858, intron 3 of 4)	intron (NM_019858, intron 3 of 4)	-2602	NM_014262	10536	Hs.631655	NM_014262	HPRD:10039	LEPREL2	GRCB|HSU47926|P3H3	leprecan-like 2	protein-coding
19-PTNLD28-TUMOR_peak_45075	chr18	28621371	28621609	+	11.07029	NA	intron (NM_001941, intron 1 of 15)	CpG	1291	NM_001941	1825	Hs.41690	NM_001941	HPRD:02604	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
19-PTNLD28-TUMOR_peak_46968	chr19	7524899	7525127	+	11.07029	NA	intron (NM_001130955, intron 10 of 19)	intron (NM_001130955, intron 10 of 19)	13234	NR_024491	100128573	Hs.465761	NR_024491		LOC100128573	-	uncharacterized LOC100128573	ncRNA
19-PTNLD28-TUMOR_peak_50386	chr19	55997787	55997918	+	11.06894	NA	exon (NM_020378, exon 3 of 3)	exon (NM_020378, exon 3 of 3)	1295	NM_020378	57106	Hs.31854	NM_020378	HPRD:10036	NAT14	KLP1	N-acetyltransferase 14 (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_1367	chr1	22265260	22265497	+	11.06590	NA	Intergenic	Intergenic	-1588	NM_005529	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_66038	chr22	47226363	47226612	+	11.06354	NA	intron (NR_104292, intron 5 of 13)	MLT1I|LTR|ERVL-MaLR	56663	NM_001284305	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_86018	chr6	24992234	24992348	+	11.06256	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	50105	NM_001286446	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_55047	chr2	113594249	113594671	+	11.06256	NA	promoter-TSS (NM_000576)	promoter-TSS (NM_000576)	-104	NM_000576	3553	Hs.126256	NM_000576	HPRD:00985	IL1B	IL-1|IL1-BETA|IL1F2	interleukin 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_10300	chr1	223687698	223687975	+	11.06256	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	121121	NM_152610	164127	Hs.192090	NM_152610	HPRD:08761	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
19-PTNLD28-TUMOR_peak_21175	chr11	112151341	112151506	+	11.06256	NA	Intergenic	Intergenic	-19840	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_12014	chr10	11834882	11835174	+	11.06226	NA	Intergenic	LTR13|LTR|ERVK	-30369	NM_153256	254427	Hs.435775	NM_153256	HPRD:10697	PROSER2	C10orf47	proline and serine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_84070	chr5	173072525	173072733	+	11.06226	NA	Intergenic	Intergenic	-28963	NM_138369	91272	Hs.425091	NM_138369	HPRD:13309	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
19-PTNLD28-TUMOR_peak_73535	chr3	195689164	195689311	+	11.06201	NA	intron (NR_003264, intron 16 of 16)	MER1B|DNA|hAT-Charlie	27913	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_20311	chr11	79151985	79152241	+	11.06018	NA	promoter-TSS (NM_001098816)	promoter-TSS (NM_001098816)	-418	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_35637	chr16	692258	692446	+	11.05859	NA	intron (NM_138418, intron 2 of 4)	CpG-8444	503	NM_138418	84331	Hs.706105	NM_032371	HPRD:17503	FAM195A	C16orf14|c349E10.1	family with sequence similarity 195, member A	protein-coding
19-PTNLD28-TUMOR_peak_7787	chr1	162875620	162875719	+	11.05500	NA	Intergenic	L2a|LINE|L2	-37064	NM_178550	339512	Hs.407631	NM_178550	HPRD:14661	C1orf110	-	chromosome 1 open reading frame 110	protein-coding
19-PTNLD28-TUMOR_peak_55654	chr2	130523271	130523414	+	11.05500	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-157408	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_12080	chr10	13042526	13042692	+	11.05500	NA	intron (NM_001282658, intron 5 of 6)	intron (NM_001282658, intron 5 of 6)	1095	NM_031455	83643	Hs.498720	NM_031455	HPRD:13008	CCDC3	-	coiled-coil domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_79541	chr5	37413176	37413312	+	11.05500	NA	intron (NM_018034, intron 5 of 17)	intron (NM_018034, intron 5 of 17)	33832	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
19-PTNLD28-TUMOR_peak_84111	chr5	173390267	173390447	+	11.05500	NA	Intergenic	Intergenic	-25805	NM_001144954	133491	Hs.131469	NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_48404	chr19	29950229	29950482	+	11.05500	NA	intron (NR_040029, intron 1 of 9)	L1PA2|LINE|L1	66304	NR_040029	284395	Hs.631601	NR_040029	ENSG00000264515	LOC284395	-	uncharacterized LOC284395	ncRNA
19-PTNLD28-TUMOR_peak_61564	chr20	46613921	46614078	+	11.05500	NA	TTS (NR_109942)	TTS (NR_109942)	2029	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
19-PTNLD28-TUMOR_peak_10767	chr1	230203824	230204121	+	11.05500	NA	intron (NM_004481, intron 1 of 15)	CpG	1030	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_15019	chr10	97273966	97274087	+	11.05500	NA	intron (NM_001290294, intron 1 of 31)	intron (NM_001290294, intron 1 of 31)	47151	NM_015385	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_104645	chr9	95987050	95987181	+	11.05500	NA	intron (NM_006648, intron 1 of 28)	intron (NM_006648, intron 1 of 28)	39903	NM_001282394	65268	Hs.654856	NM_006648	HPRD:06951	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_69567	chr3	106960115	106960394	+	11.05500	NA	promoter-TSS (NR_028303)	promoter-TSS (NR_028303)	715	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	LINC00883	-	long intergenic non-protein coding RNA 883	ncRNA
19-PTNLD28-TUMOR_peak_6816	chr1	151778394	151778541	+	11.05500	NA	promoter-TSS (NM_001004432)	promoter-TSS (NM_001004432)	-585	NM_001004432	339398	Hs.591477	NM_001004432		LINGO4	DAAT9248|LRRN6D|PRO34002	leucine rich repeat and Ig domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_97191	chr8	11872614	11872779	+	11.05406	NA	Intergenic	CpG	-18936	NM_001033019	613211	Hs.631852	NM_001033019		DEFB134	-	defensin, beta 134	protein-coding
19-PTNLD28-TUMOR_peak_26272	chr12	110887579	110887714	+	11.05406	NA	intron (NM_001278556, intron 1 of 6)	intron (NM_001278556, intron 1 of 6)	570	NM_001278556	10094	Hs.524741	NM_001278556	HPRD:09175	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex, subunit 3, 21kDa	protein-coding
19-PTNLD28-TUMOR_peak_22272	chr11	133510784	133510927	+	11.05406	NA	Intergenic	L1PA2|LINE|L1	-108452	NM_001012393	4978	Hs.4817	NM_002545	HPRD:07198	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
19-PTNLD28-TUMOR_peak_63076	chr21	30671613	30671785	+	11.05406	NA	promoter-TSS (NM_206866)	promoter-TSS (NM_206866)	-38	NM_206866	571	Hs.154276	NM_001186	HPRD:04127	BACH1	BACH-1|BTBD24	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_54785	chr2	109744554	109744773	+	11.05406	NA	non-coding (NR_029193, exon 1 of 1)	non-coding (NR_029193, exon 1 of 1)	-1334	NM_001099289	344558	Hs.171244	NM_001099289		SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_69623	chr3	107851615	107852056	+	11.05119	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	7167	NR_110028	101929623	Hs.570653	NR_110028		LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
19-PTNLD28-TUMOR_peak_53911	chr2	86947672	86947931	+	11.05119	NA	exon (NM_022780, exon 1 of 9)	exon (NM_022780, exon 1 of 9)	387	NM_022780	64795	Hs.75277	NM_022780	HPRD:07841	RMND5A	CTLH|GID2|GID2A|RMD5|p44CTLH	required for meiotic nuclear division 5 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_30235	chr14	51136911	51137094	+	11.04358	NA	Intergenic	Intergenic	-1931	NM_021818	60485	Hs.642842	NM_021818	HPRD:06229	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_13523	chr10	50011835	50011980	+	11.04358	NA	intron (NM_020945, intron 25 of 61)	intron (NM_020945, intron 25 of 61)	110373	NM_001006939	474354	Hs.202438	NM_001006939	HPRD:17450	LRRC18	UNQ933|UNQ9338|VKGE9338	leucine rich repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_38749	chr16	75285481	75285640	+	11.03956	NA	promoter-TSS (NM_014567)	promoter-TSS (NM_014567)	-34	NM_001170717	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_30900	chr14	68282683	68282895	+	11.03784	NA	intron (NM_015346, intron 1 of 41)	intron (NM_015346, intron 1 of 41)	517	NM_015346	23503	Hs.98041	NM_015346	HPRD:15734	ZFYVE26	FYVE-CENT|SPG15	zinc finger, FYVE domain containing 26	protein-coding
19-PTNLD28-TUMOR_peak_689	chr1	10554816	10554975	+	11.03645	NA	intron (NM_004565, intron 1 of 8)	intron (NM_004565, intron 1 of 8)	19892	NM_004565	5195	Hs.149983	NM_004565	HPRD:03477	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
19-PTNLD28-TUMOR_peak_30541	chr14	58632745	58632955	+	11.03598	NA	Intergenic	Intergenic	-14003	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
19-PTNLD28-TUMOR_peak_27106	chr12	127618616	127618769	+	11.03598	NA	Intergenic	Intergenic	-73750	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_16800	chr11	4203403	4203606	+	11.03598	NA	Intergenic	Intergenic	-4878	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	ncRNA
19-PTNLD28-TUMOR_peak_5860	chr1	117610491	117610640	+	11.03598	NA	intron (NM_003594, intron 3 of 22)	intron (NM_003594, intron 3 of 22)	7616	NM_003594	8458	Hs.486818	NM_003594		TTF2	HuF2|ZGRF6	transcription termination factor, RNA polymerase II	protein-coding
19-PTNLD28-TUMOR_peak_109767	chrX	150094481	150095043	+	11.03598	NA	Intergenic	Intergenic	-27473	NM_134446	83692	Hs.522805	NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule-like 2	protein-coding
19-PTNLD28-TUMOR_peak_35749	chr16	1985404	1985577	+	11.03598	NA	Intergenic	ERVL-B4-int|LTR|ERVL	7804	NM_016332	51734	Hs.655346	NM_016332	HPRD:12095	MSRB1	SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
19-PTNLD28-TUMOR_peak_20471	chr11	86626981	86627162	+	11.03598	NA	intron (NR_120592, intron 2 of 2)	AluSz6|SINE|Alu	39369	NM_012193	8322	Hs.591968	NM_012193	HPRD:05203	FZD4	CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4	frizzled class receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_52259	chr2	39457092	39457251	+	11.03598	NA	promoter-TSS (NM_001009565)	promoter-TSS (NM_001009565)	-498	NM_001009565	344387	Hs.403201	NM_001009565	HPRD:16698	CDKL4	-	cyclin-dependent kinase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_103846	chr9	75155524	75155723	+	11.03598	NA	intron (NM_138691, intron 1 of 23)	intron (NM_138691, intron 1 of 23)	18906	NM_138691	117531	Hs.670211	NM_138691	HPRD:05988	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel-like 1	protein-coding
19-PTNLD28-TUMOR_peak_40248	chr17	13447732	13448012	+	11.03598	NA	intron (NM_006042, intron 1 of 1)	intron (NM_006042, intron 1 of 1)	57372	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_56153	chr2	145660606	145660744	+	11.03598	NA	intron (NR_033870, intron 2 of 4)	L1PA2|LINE|L1	235141	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_4031	chr1	63793352	63793487	+	11.03598	NA	promoter-TSS (NR_106716)	promoter-TSS (NR_106716)	-764	NR_106716	102464823		NR_106716		MIR6068	hsa-mir-6068	microRNA 6068	ncRNA
19-PTNLD28-TUMOR_peak_43285	chr17	72112327	72112607	+	11.03598	NA	Intergenic	Intergenic	-87328	NM_000999	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_32625	chr15	25711057	25711271	+	11.03598	NA	Intergenic	Intergenic	-26989	NM_130839	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_32041	chr14	100525803	100526050	+	11.03598	NA	Intergenic	Intergenic	-5825	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_101324	chr8	139532854	139533124	+	11.03598	NA	Intergenic	Intergenic	-23924	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_5924	chr1	119116324	119116438	+	11.03598	NA	Intergenic	L1PA3|LINE|L1	-388533	NM_206996	200162	Hs.528821	NM_206996	HPRD:10146	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding
19-PTNLD28-TUMOR_peak_22576	chr12	4006187	4006343	+	11.03598	NA	Intergenic	L3|LINE|CR1	-23651	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_60674	chr20	33479058	33479292	+	11.03598	NA	intron (NM_001076552, intron 2 of 18)	intron (NM_001076552, intron 2 of 18)	14847	NM_001076552	55902	Hs.517034	NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|dJ1161H23.1	acyl-CoA synthetase short-chain family member 2	protein-coding
19-PTNLD28-TUMOR_peak_11268	chr1	240354320	240354425	+	11.03358	NA	intron (NM_020066, intron 4 of 17)	intron (NM_020066, intron 4 of 17)	99187	NM_020066	56776	Hs.24889	NM_020066	HPRD:10449	FMN2	-	formin 2	protein-coding
19-PTNLD28-TUMOR_peak_88503	chr6	82143573	82143671	+	11.03358	NA	Intergenic	L1PA3|LINE|L1	318806	NM_017633	55603	Hs.10784	NM_017633	HPRD:13311	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
19-PTNLD28-TUMOR_peak_56920	chr2	171699388	171699606	+	11.03358	NA	TTS (NM_013445)	TTS (NM_013445)	26297	NM_013445	2571	Hs.420036	NM_000817	HPRD:12011	GAD1	CPSQ1|GAD|SCP	glutamate decarboxylase 1 (brain, 67kDa)	protein-coding
19-PTNLD28-TUMOR_peak_42564	chr17	56234363	56234593	+	11.03358	NA	non-coding (NR_002307, exon 1 of 1)	non-coding (NR_002307, exon 1 of 1)	158	NR_002307	55545	Hs.381329	NR_002307		MSX2P1	HPX5|HSHPX5|MSX2P	msh homeobox 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_59647	chr20	4989514	4989728	+	11.03358	NA	intron (NM_203327, intron 1 of 16)	L2c|LINE|L2	1318	NM_203327	9962	Hs.516866	NM_005116	HPRD:04811	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_37945	chr16	56188902	56189012	+	11.03358	NA	intron (NR_027078, intron 2 of 4)	L1PA3|LINE|L1	36049	NR_027078	283856	Hs.707433	NR_027078	ENSG00000246379	LOC283856	-	uncharacterized LOC283856	ncRNA
19-PTNLD28-TUMOR_peak_76826	chr4	121252979	121253357	+	11.03358	NA	Intergenic	MER58A|DNA|hAT-Charlie	-265155	NM_002358	4085	Hs.591697	NM_002358		MAD2L1	HSMAD2|MAD2	MAD2 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_108335	chrX	51075488	51075726	+	11.03358	NA	intron (NM_153183, intron 1 of 2)	CpG	524	NM_153183	170685	Hs.375178	NM_153183	HPRD:17651	NUDT10	APS2|DIPP3a|hDIPP3alpha	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding
19-PTNLD28-TUMOR_peak_106025	chr9	126862930	126863205	+	11.03358	NA	Intergenic	LTR85c|LTR|Gypsy?	89178	NM_004789	9355	Hs.696425	NM_004789	HPRD:04786	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_5098	chr1	97610214	97610342	+	11.03358	NA	intron (NM_000110, intron 20 of 22)	intron (NM_000110, intron 20 of 22)	48799	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22248	chr11	131374180	131374484	+	11.03358	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	36429	NR_110140	101929653	Hs.559159	NR_110140	ENSG00000237654	LOC101929653	-	uncharacterized LOC101929653	ncRNA
19-PTNLD28-TUMOR_peak_49463	chr19	46580940	46581062	+	11.03358	NA	promoter-TSS (NR_125344)	promoter-TSS (NR_125344)	-114	NR_125344	400706	Hs.630811	NR_125344		LOC400706	-	uncharacterized LOC400706	ncRNA
19-PTNLD28-TUMOR_peak_108427	chrX	55035367	55035474	+	11.03358	NA	TTS (NM_000032)	TTS (NM_000032)	8664	NM_001271748	27301	Hs.659558	NM_014481		APEX2	APE2|APEXL2|XTH2|ZGRF2	APEX nuclease (apurinic/apyrimidinic endonuclease) 2	protein-coding
19-PTNLD28-TUMOR_peak_86565	chr6	31047523	31047814	+	11.03358	NA	Intergenic	LTR41B|LTR|ERVL	26441	NR_003948	285834	Hs.207528	NR_003948	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22	ncRNA
19-PTNLD28-TUMOR_peak_23511	chr12	27332841	27333036	+	11.03358	NA	Intergenic	Intergenic	-64140	NM_015000	23012	Hs.184523	NM_015000	HPRD:10256	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
19-PTNLD28-TUMOR_peak_89402	chr6	127442667	127442796	+	11.03358	NA	intron (NM_032784, intron 1 of 4)	intron (NM_032784, intron 1 of 4)	2683	NM_032784	84870	Hs.135254	NM_032784		RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
19-PTNLD28-TUMOR_peak_8887	chr1	185861848	185861965	+	11.03358	NA	intron (NM_031935, intron 4 of 106)	L1PA2|LINE|L1	158223	NM_031935	83872	Hs.58877	NM_031935	HPRD:06509	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
19-PTNLD28-TUMOR_peak_51644	chr2	26214513	26214757	+	11.03358	NA	Intergenic	Intergenic	-9192	NM_002254	3797	Hs.21611	NM_002254	HPRD:04164	KIF3C	-	kinesin family member 3C	protein-coding
19-PTNLD28-TUMOR_peak_13174	chr10	43484614	43484740	+	11.03358	NA	Intergenic	Intergenic	-8334	NR_049836	100847014		NR_049836	miRBase:MI0019116	MIR5100	-	microRNA 5100	ncRNA
19-PTNLD28-TUMOR_peak_102597	chr9	29514403	29514759	+	11.03358	NA	Intergenic	LTR1D|LTR|ERV1	-301583	NM_001258282	158038	Hs.662661	NM_152570	HPRD:08715	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102783	chr9	34463722	34463912	+	11.03358	NA	intron (NM_001281428, intron 1 of 19)	intron (NM_001281428, intron 1 of 19)	5067	NM_012144	27019	Hs.112667	NM_012144	HPRD:05080	DNAI1	CILD1|DIC1|ICS1|PCD	dynein, axonemal, intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_29992	chr14	39309058	39309192	+	11.03358	NA	intron (NR_039982, intron 2 of 4)	L1M6|LINE|L1	76961	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
19-PTNLD28-TUMOR_peak_63320	chr21	35975474	35975610	+	11.03358	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	10600	NM_001285389	1827	Hs.282326	NM_004414	HPRD:04226	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
19-PTNLD28-TUMOR_peak_55993	chr2	138160276	138160404	+	11.03358	NA	intron (NM_001080427, intron 11 of 26)	AluSz|SINE|Alu	411878	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_91612	chr7	23387361	23387499	+	11.03358	NA	intron (NM_006547, intron 6 of 14)	intron (NM_006547, intron 6 of 14)	48490	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_20779	chr11	98891459	98891693	+	11.03358	NA	promoter-TSS (NM_001243271)	promoter-TSS (NM_001243271)	-130	NM_001243270	53942	Hs.656783	NM_014361	HPRD:06241	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
19-PTNLD28-TUMOR_peak_53435	chr2	72151230	72151328	+	11.03358	NA	Intergenic	Intergenic	223712	NM_001277742	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_100001	chr8	107059860	107059995	+	11.03358	NA	intron (NR_125797, intron 1 of 4)	intron (NR_125797, intron 1 of 4)	12804	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24744	chr12	57463315	57463515	+	11.03358	NA	intron (NM_001130963, intron 3 of 8)	intron (NM_001130963, intron 3 of 8)	9159	NM_001130963	23306	Hs.591040	NM_015257	HPRD:13793	TMEM194A	TMEM194	transmembrane protein 194A	protein-coding
19-PTNLD28-TUMOR_peak_6851	chr1	152082881	152083127	+	11.03105	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	4926	NM_007113	7062	Hs.432416	NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY	trichohyalin	protein-coding
19-PTNLD28-TUMOR_peak_49432	chr19	46220045	46220196	+	11.03056	NA	intron (NM_001080469, intron 1 of 1)	MIR|SINE|MIR	14031	NM_001080469	23403	Hs.128702	NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
19-PTNLD28-TUMOR_peak_9778	chr1	206897145	206897456	+	11.03056	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	38935	NM_004759	9261	Hs.643566	NM_004759	HPRD:11882	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_42736	chr17	59494283	59494449	+	11.03056	NA	Intergenic	CpG	5254	NM_203425	388407	Hs.434459	NM_203425	HPRD:14202	C17orf82	-	chromosome 17 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_71197	chr3	138654958	138655287	+	11.03056	NA	non-coding (NR_121649, exon 3 of 3)	non-coding (NR_121649, exon 3 of 3)	7740	NR_121649	103344930	Hs.195033	NR_121649		LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
19-PTNLD28-TUMOR_peak_74017	chr4	3768857	3769032	+	11.03024	NA	exon (NM_000683, exon 1 of 1)	exon (NM_000683, exon 1 of 1)	648	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_47218	chr19	10535098	10535302	+	11.03024	NA	intron (NM_001111307, intron 1 of 14)	CpG	3867	NM_001111307	5141	Hs.89901	NM_006202	HPRD:02527	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_52106	chr2	36608263	36608718	+	11.03024	NA	intron (NM_016441, intron 1 of 16)	intron (NM_016441, intron 1 of 16)	25120	NM_016441	51232	Hs.699247	NM_016441	HPRD:08392	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
19-PTNLD28-TUMOR_peak_84402	chr5	177751501	177751650	+	11.02886	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	-91752	NR_103509	85007	Hs.248746	NM_153373	HPRD:18482	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_92969	chr7	66532360	66532560	+	11.02886	NA	intron (NM_018264, intron 10 of 15)	intron (NM_018264, intron 10 of 15)	46924	NR_039794	100616331		NR_039794	miRBase:MI0017278	MIR4650-2	-	microRNA 4650-2	ncRNA
19-PTNLD28-TUMOR_peak_78996	chr5	13985926	13986040	+	11.02886	NA	Intergenic	Intergenic	-41394	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_81143	chr5	91181819	91182083	+	11.02886	NA	Intergenic	Intergenic	-502802	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_24979	chr12	64589854	64589975	+	11.02886	NA	intron (NM_001300940, intron 2 of 3)	L1PA2|LINE|L1	26162	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_82174	chr5	133150023	133150203	+	11.02886	NA	Intergenic	Intergenic	154293	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_48583	chr19	34571355	34571464	+	11.02886	NA	Intergenic	SVA_F|Other|Other	-91943	NM_015578	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_103709	chr9	72121035	72121216	+	11.02886	NA	intron (NM_001163, intron 2 of 12)	L1PA2|LINE|L1	166150	NM_001163	320	Hs.171939	NM_001163	HPRD:03879	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11388	chr1	244349882	244350264	+	11.02886	NA	Intergenic	Intergenic	133566	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_8023	chr1	168051618	168051744	+	11.02460	NA	3' UTR (NM_001267611, exon 6 of 6)	3' UTR (NM_001267611, exon 6 of 6)	53993	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_44840	chr18	20139463	20139929	+	11.02460	NA	Intergenic	CpG	-141818	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_86403	chr6	29759092	29759226	+	11.02460	NA	promoter-TSS (NM_001207043)	promoter-TSS (NM_001207043)	-524	NM_001207043	554223	Hs.60856	NM_001207043		LOC554223	-	histocompatibility antigen-related	protein-coding
19-PTNLD28-TUMOR_peak_71996	chr3	158284178	158284304	+	11.02460	NA	intron (NR_104147, intron 2 of 4)	intron (NR_104147, intron 2 of 4)	4614	NR_104147	100996447	Hs.369810	NR_104147	ENSG00000243150	LOC100996447	-	uncharacterized LOC100996447	ncRNA
19-PTNLD28-TUMOR_peak_4511	chr1	82197327	82197484	+	11.02323	NA	intron (NM_001297704, intron 1 of 20)	intron (NM_001297704, intron 1 of 20)	31950	NM_001297704	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_15491	chr10	106110029	106110162	+	11.02323	NA	TTS (NR_108036)	TTS (NR_108036)	3238	NR_108036	100505869	Hs.338140	NR_108036		CCDC147-AS1	-	CCDC147 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_36075	chr16	5209998	5210169	+	11.02323	NA	Intergenic	L2b|LINE|L2	-62262	NM_001289029	196483	Hs.406461	NM_201400	HPRD:18018	FAM86A	-	family with sequence similarity 86, member A	protein-coding
19-PTNLD28-TUMOR_peak_7341	chr1	156647059	156647300	+	11.02323	NA	promoter-TSS (NM_006617)	promoter-TSS (NM_006617)	10	NM_006617	10763	Hs.527971	NM_006617	HPRD:09020	NES	-	nestin	protein-coding
19-PTNLD28-TUMOR_peak_14887	chr10	93170334	93170496	+	11.02323	NA	intron (NR_104291, intron 1 of 20)	CpG	373	NM_182765	143279	Hs.596096	NM_173497	HPRD:13643	HECTD2	-	HECT domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_15154	chr10	99788048	99788197	+	11.02323	NA	intron (NM_018058, intron 1 of 14)	intron (NM_018058, intron 1 of 14)	2463	NM_001206528	55118	Hs.500736	NM_018058	HPRD:10447	CRTAC1	ASPIC|ASPIC1|CEP-68	cartilage acidic protein 1	protein-coding
19-PTNLD28-TUMOR_peak_36859	chr16	23690871	23691025	+	11.01800	NA	intron (NM_005030, intron 1 of 9)	intron (NM_005030, intron 1 of 9)	747	NM_005030	5347	Hs.592049	NM_005030	HPRD:03652	PLK1	PLK|STPK13	polo-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_24714	chr12	56987641	56988132	+	11.01800	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	36229	NM_001300905	11176	Hs.314263	NM_013449	HPRD:10417	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain, 2A	protein-coding
19-PTNLD28-TUMOR_peak_72041	chr3	159173577	159173770	+	11.01800	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	173238	NR_037483	100500803		NR_037483		MIR3919	-	microRNA 3919	ncRNA
19-PTNLD28-TUMOR_peak_33163	chr15	40544703	40544853	+	11.01800	NA	promoter-TSS (NM_001276717)	promoter-TSS (NM_001276717)	332	NM_001039905	644809	Hs.631718	NM_001039905	ENSG00000176753	C15orf56	-	chromosome 15 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_47939	chr19	17828099	17828458	+	11.01739	NA	Intergenic	Intergenic	-2025	NM_018174	55201	Hs.66048	NM_018174	HPRD:10461	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
19-PTNLD28-TUMOR_peak_75860	chr4	78980827	78980957	+	11.01739	NA	intron (NM_001166133, intron 1 of 41)	intron (NM_001166133, intron 1 of 41)	2168	NM_001166133	80144	Hs.369448	NM_020875	HPRD:06382	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_73505	chr3	195535894	195536058	+	11.01739	NA	intron (NM_018406, intron 1 of 24)	intron (NM_018406, intron 1 of 24)	2868	NM_004532	4585	Hs.369646	NM_004532	HPRD:11829	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_10490	chr1	226373886	226374237	+	11.01739	NA	intron (NM_022735, intron 1 of 7)	CpG	362	NM_022735	64746	Hs.520207	NM_022735	HPRD:08432	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_64090	chr21	47370101	47370329	+	11.01342	NA	Intergenic	Intergenic	-22669	NR_109931	101928796	Hs.130919	NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
19-PTNLD28-TUMOR_peak_86476	chr6	30538720	30538880	+	11.01342	NA	promoter-TSS (NM_001025091).5	promoter-TSS (NM_001025091).5	-370	NM_001090	23	Hs.655285	NM_001090	HPRD:09139	ABCF1	ABC27|ABC50	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding
19-PTNLD28-TUMOR_peak_18850	chr11	61065392	61065503	+	11.01259	NA	Intergenic	Intergenic	-2659	NM_152718	220001	Hs.60640	NM_152718	HPRD:08116	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
19-PTNLD28-TUMOR_peak_45570	chr18	45550027	45550439	+	11.01259	NA	Intergenic	Intergenic	-92716	NM_001003652	4087	Hs.12253	NM_005901	HPRD:03221	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_36190	chr16	9690749	9690918	+	11.01135	NA	Intergenic	MER77B|LTR|ERVL	-32585	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_73744	chr4	628439	628558	+	11.01135	NA	exon (NM_001145291, exon 2 of 22)	exon (NM_001145291, exon 2 of 22)	9135	NM_001145291	5158	Hs.623810	NM_000283	HPRD:01571	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B, cGMP-specific, rod, beta	protein-coding
19-PTNLD28-TUMOR_peak_16851	chr11	6165027	6165480	+	11.01135	NA	Intergenic	L1PA3|LINE|L1	26303	NM_001004052	255725	Hs.690457	NM_001004052	HPRD:15006	OR52B2	OR11-70	olfactory receptor, family 52, subfamily B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_44659	chr18	12419818	12420140	+	11.01135	NA	intron (NM_001142405, intron 1 of 6)	AluJb|SINE|Alu	12084	NM_006553	10650	Hs.514718	NM_006553	HPRD:09981	SLMO1	C18orf43|HFL-EDDG1|PRELID3A	slowmo homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_84584	chr5	180478397	180478567	+	11.01135	NA	intron (NM_152547, intron 4 of 10)	MER67C|LTR|ERV1	-7998	NR_107056	102465882		NR_107056		MIR8089	hsa-mir-8089	microRNA 8089	ncRNA
19-PTNLD28-TUMOR_peak_59950	chr20	16710862	16711068	+	11.01135	NA	intron (NM_003092, intron 1 of 6)	CpG	356	NM_198220	6629	Hs.280378	NM_003092	HPRD:04628	SNRPB2	Msl1	small nuclear ribonucleoprotein polypeptide B	protein-coding
19-PTNLD28-TUMOR_peak_67246	chr3	25859227	25859432	+	11.01135	NA	Intergenic	Intergenic	27766	NR_026937	54995	Hs.55781	NM_017897	HPRD:07931	OXSM	FASN2D|KASI|KS	3-oxoacyl-ACP synthase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_83703	chr5	167230084	167230355	+	11.01135	NA	intron (NM_001122679, intron 2 of 28)	intron (NM_001122679, intron 2 of 28)	429158	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_94536	chr7	102224043	102224221	+	11.01135	NA	intron (NM_001079877, intron 18 of 19)	L2|LINE|L2	-11064	NM_001097615	548644	Hs.610255	NM_001015884	HPRD:18684	POLR2J3	POLR2J2|RPB11b1|RPB11b2	polymerase (RNA) II (DNA directed) polypeptide J3	protein-coding
19-PTNLD28-TUMOR_peak_55655	chr2	130523620	130523818	+	11.01135	NA	Intergenic	Intergenic	-157031	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_55368	chr2	121364649	121364842	+	11.01135	NA	Intergenic	Intergenic	-140820	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_36463	chr16	15005710	15005844	+	11.00491	NA	TTS (NR_036141)	TTS (NR_036141)	696	NR_036142	100422956		NR_036142	miRBase:MI0014215	MIR3180-2	-	microRNA 3180-2	ncRNA
19-PTNLD28-TUMOR_peak_1905	chr1	29451022	29451209	+	11.00179	NA	promoter-TSS (NM_001003682)	promoter-TSS (NM_001003682)	-694	NM_001003682	399474	Hs.712722	NM_001003682	HPRD:13188	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
19-PTNLD28-TUMOR_peak_13374	chr10	47062723	47062866	+	10.99747	NA	Intergenic	MER65C|LTR|ERV1	-20740	NM_005972	5540	Hs.524719	NM_005972	HPRD:03476	NPY4R	NPY4-R|PP1|PPYR1|Y4	neuropeptide Y receptor Y4	protein-coding
19-PTNLD28-TUMOR_peak_87645	chr6	44004064	44004194	+	10.99747	NA	Intergenic	Intergenic	35792	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_25940	chr12	104848910	104849057	+	10.99747	NA	Intergenic	Intergenic	-1709	NM_001173982	50515	Hs.17569	NM_018413	HPRD:13055	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate (chondroitin 4) sulfotransferase 11	protein-coding
19-PTNLD28-TUMOR_peak_63532	chr21	40169524	40169692	+	10.99389	NA	Intergenic	MIRc|SINE|MIR	-7623	NM_001256295	2114	Hs.644231	NM_005239	HPRD:01263	ETS2	ETS2IT1	v-ets avian erythroblastosis virus E26 oncogene homolog 2	protein-coding
19-PTNLD28-TUMOR_peak_43384	chr17	73127150	73127349	+	10.99389	NA	TTS (NM_024585)	TTS (NM_024585)	641	NM_001252377	30833	Hs.67201	NM_014595	HPRD:11833	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
19-PTNLD28-TUMOR_peak_14008	chr10	70821745	70821856	+	10.99389	NA	Intergenic	MIRb|SINE|MIR	-26028	NM_002727	5552	Hs.1908	NM_002727	HPRD:01513	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
19-PTNLD28-TUMOR_peak_42703	chr17	58217262	58217398	+	10.99061	NA	Intergenic	CpG	-9972	NM_000717	762	Hs.89485	NM_000717	HPRD:00261	CA4	CAIV|Car4|RP17	carbonic anhydrase IV	protein-coding
19-PTNLD28-TUMOR_peak_40944	chr17	29909228	29909433	+	10.99061	NA	Intergenic	Intergenic	6900	NR_029856	100126356		NR_029856	miRBase:MI0000769	MIR365B	MIR365-2|MIRN365-2|hsa-mir-365b	microRNA 365b	ncRNA
19-PTNLD28-TUMOR_peak_70089	chr3	120187597	120187768	+	10.99061	NA	Intergenic	LTR50|LTR|ERVL	-17764	NM_007085	11167	Hs.269512	NM_007085		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_47480	chr19	13065467	13065681	+	10.99061	NA	intron (NM_052850, intron 1 of 1)	intron (NM_052850, intron 1 of 1)	2494	NM_052850	90480	Hs.515164	NM_052850	HPRD:05519	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_67735	chr3	42696415	42696627	+	10.98970	NA	promoter-TSS (NR_125400)	promoter-TSS (NR_125400)	-641	NR_125400	101928323		NR_125400		LOC101928323	-	uncharacterized LOC101928323	ncRNA
19-PTNLD28-TUMOR_peak_17465	chr11	17427071	17427448	+	10.98342	NA	intron (NM_001287174, intron 26 of 38)	intron (NM_001287174, intron 26 of 38)	-16381	NM_001166290	3767	Hs.248141	NM_000525	HPRD:09022	KCNJ11	BIR|HHF2|IKATP|KIR6.2|PHHI|TNDM3	potassium inwardly-rectifying channel, subfamily J, member 11	protein-coding
19-PTNLD28-TUMOR_peak_14266	chr10	73817081	73817493	+	10.98342	NA	Intergenic	Intergenic	31244	NM_001244950	9806	Hs.523009	NM_014767	HPRD:12146	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
19-PTNLD28-TUMOR_peak_99053	chr8	67454644	67454903	+	10.98342	NA	Intergenic	CpG	49282	NM_152765	254778	Hs.268869	NM_152765	HPRD:14565	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_17622	chr11	20149937	20150043	+	10.98342	NA	Intergenic	Intergenic	31880	NM_001029865	120237	Hs.558604	NM_001029865	HPRD:18721	DBX1	-	developing brain homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_37456	chr16	33139786	33139905	+	10.98192	NA	Intergenic	AluY|SINE|Alu	-65738	NR_110897	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_109924	chrX	153218889	153219023	+	10.98185	NA	intron (NM_005334, intron 18 of 25)	CpG	-8724	NM_002910	5973	Hs.158331	NM_002910	HPRD:02423	RENBP	RBP|RNBP	renin binding protein	protein-coding
19-PTNLD28-TUMOR_peak_40987	chr17	31203325	31203955	+	10.98185	NA	intron (NM_015194, intron 1 of 21)	CpG	262	NM_015194	4642	Hs.602063	NM_015194	HPRD:07581	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
19-PTNLD28-TUMOR_peak_33864	chr15	62428079	62428304	+	10.98185	NA	Intergenic	Intergenic	29291	NM_001007595	388125	Hs.144372	NM_001007595	HPRD:17636	C2CD4B	FAM148B|NLF2	C2 calcium-dependent domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_66248	chr3	4762488	4762739	+	10.98185	NA	intron (NM_001168272, intron 39 of 60)	intron (NM_001168272, intron 39 of 60)	30661	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82429	chr5	137404589	137404701	+	10.98086	NA	Intergenic	Intergenic	-14936	NM_001300939	7478	Hs.591274	NM_031933	HPRD:05898	WNT8A	WNT8D	wingless-type MMTV integration site family, member 8A	protein-coding
19-PTNLD28-TUMOR_peak_72514	chr3	177375149	177375385	+	10.98086	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-159386	NR_110826	102724550	Hs.570526	NR_110826		LOC102724550	-	uncharacterized LOC102724550	ncRNA
19-PTNLD28-TUMOR_peak_65203	chr22	33017847	33018261	+	10.98086	NA	intron (NM_001135774, intron 6 of 13)	intron (NM_001135774, intron 6 of 13)	146830	NM_001033024	25793	Hs.5912	NM_012179	HPRD:07292	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
19-PTNLD28-TUMOR_peak_945	chr1	14843897	14844424	+	10.98086	NA	Intergenic	Intergenic	-81053	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_85045	chr6	5671469	5671682	+	10.98086	NA	intron (NR_110842, intron 2 of 3)	intron (NR_110842, intron 2 of 3)	23930	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
19-PTNLD28-TUMOR_peak_37925	chr16	55522358	55522537	+	10.98086	NA	intron (NM_004530, intron 5 of 12)	intron (NM_004530, intron 5 of 12)	6973	NM_001127891	4313	Hs.513617	NM_004530	HPRD:00386	MMP2	CLG4|CLG4A|MMP-II|MONA|TBE-1	matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_11452	chr1	245508419	245508965	+	10.98086	NA	intron (NM_018012, intron 2 of 14)	L2a|LINE|L2	190405	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_81785	chr5	121718637	121719261	+	10.98086	NA	intron (NM_005460, intron 1 of 10)	L1PA2|LINE|L1	71129	NM_001242935	9627	Hs.426463	NM_005460	HPRD:04804	SNCAIP	SYPH1|Sph1	synuclein, alpha interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_24251	chr12	51844638	51844815	+	10.98086	NA	exon (NM_001267615, exon 3 of 15)	exon (NM_001267615, exon 3 of 15)	25825	NM_001258403	9498	Hs.4749	NM_004858	HPRD:05430	SLC4A8	NBC3|NDCBE	solute carrier family 4, sodium bicarbonate cotransporter, member 8	protein-coding
19-PTNLD28-TUMOR_peak_63310	chr21	35882940	35883157	+	10.98086	NA	intron (NM_001270402, intron 1 of 2)	intron (NM_001270402, intron 1 of 2)	565	NM_001270403	3753	Hs.121495	NM_000219	HPRD:01442	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel, Isk-related family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_44475	chr18	9055448	9055612	+	10.98086	NA	Intergenic	Intergenic	-47098	NM_021074	4729	Hs.464572	NM_021074	HPRD:02757	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_4885	chr1	93373646	93373779	+	10.98005	NA	intron (NM_001252273, intron 1 of 4)	L2|LINE|L2	-31005	NM_001252271	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_98911	chr8	58910427	58910575	+	10.98005	NA	intron (NM_147189, intron 1 of 4)	MIRb|SINE|MIR	3388	NM_147189	90362	Hs.154652	NM_147189	HPRD:14609	FAM110B	C8orf72	family with sequence similarity 110, member B	protein-coding
19-PTNLD28-TUMOR_peak_20664	chr11	94829548	94829665	+	10.98005	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	6632	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53746	chr2	85173583	85173760	+	10.98005	NA	Intergenic	L2b|LINE|L2	-24560	NM_020122	56888	Hs.654968	NM_020122	HPRD:13761	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_70337	chr3	124512333	124512502	+	10.98005	NA	intron (NM_002213, intron 10 of 14)	MIRb|SINE|MIR	63204	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_72437	chr3	174581399	174581614	+	10.98005	NA	intron (NM_207015, intron 1 of 13)	intron (NM_207015, intron 1 of 13)	4395	NM_207015	254827	Hs.565848	NM_207015	HPRD:16388	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_53830	chr2	85940479	85940738	+	10.98005	NA	Intergenic	Intergenic	19194	NM_006433	10578	Hs.105806	NM_006433	HPRD:01788	GNLY	519|D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
19-PTNLD28-TUMOR_peak_70653	chr3	128513344	128513594	+	10.98005	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	68490	NM_004637	7879	Hs.744853	NM_004637	HPRD:03805	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_653	chr1	9935010	9935151	+	10.98005	NA	intron (NM_001012329, intron 2 of 4)	intron (NM_001012329, intron 2 of 4)	35236	NM_020248	56998	Hs.463759	NM_020248	HPRD:09677	CTNNBIP1	ICAT	catenin, beta interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46608	chr19	1826249	1826363	+	10.98005	NA	intron (NM_020695, intron 2 of 15)	intron (NM_020695, intron 2 of 15)	4218	NR_034114	100288123	Hs.662426	NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
19-PTNLD28-TUMOR_peak_66594	chr3	11243330	11243514	+	10.98005	NA	intron (NM_001098212, intron 1 of 1)	intron (NM_001098212, intron 1 of 1)	-24247	NM_001098211	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_50187	chr19	53635596	53635877	+	10.98005	NA	intron (NR_028343, intron 1 of 6)	CpG	435	NM_001164309	55786	Hs.147765	NM_018355	HPRD:18340	ZNF415	-	zinc finger protein 415	protein-coding
19-PTNLD28-TUMOR_peak_106860	chr9	140400817	140401015	+	10.98005	NA	intron (NM_152286, intron 11 of 33)	LTR42|LTR|ERVL	44105	NM_152286	375775	Hs.294147	NM_152286	HPRD:12933	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin-like phospholipase domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_74950	chr4	38156836	38157145	+	10.98005	NA	Intergenic	Intergenic	35415	NM_001253915	23216	Hs.176503	NM_015173	HPRD:18161	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_94224	chr7	99178112	99178264	+	10.98005	NA	Intergenic	Intergenic	-17714	NM_001195542	100289187	Hs.729333	NM_001195541		GS1-259H13.2	-	transmembrane protein 225-like	protein-coding
19-PTNLD28-TUMOR_peak_3282	chr1	47595686	47595841	+	10.98005	NA	Intergenic	HERV17-int|LTR|ERV1	-7344	NM_001010969	284541	Hs.726474	NM_001010969		CYP4A22	-	cytochrome P450, family 4, subfamily A, polypeptide 22	protein-coding
19-PTNLD28-TUMOR_peak_26750	chr12	121937827	121937932	+	10.98005	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-55724	NR_106957	102465665		NR_106957		MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
19-PTNLD28-TUMOR_peak_79841	chr5	52284967	52285198	+	10.97975	NA	promoter-TSS (NR_073107)	promoter-TSS (NR_073107)	-74	NM_002203	3673	Hs.482077	NM_002203	HPRD:01893	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_16742	chr11	3442952	3443144	+	10.97975	NA	Intergenic	Intergenic	-29903	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96339	chr7	150784521	150784732	+	10.97975	NA	intron (NM_001042535, intron 1 of 8)	CpG	827	NM_001042535	116988	Hs.647075	NM_031946	HPRD:16707	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_3632	chr1	54741093	54741394	+	10.97437	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	39127	NR_103541	619518	Hs.591438	NM_001034847		SSBP3-AS1	C1orf191|MST128	SSBP3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69577	chr3	107148865	107148983	+	10.97358	NA	promoter-TSS (NR_110039)	promoter-TSS (NR_110039)	-853	NR_110039	101929607	Hs.252565	NR_110039		LOC101929607	-	uncharacterized LOC101929607	ncRNA
19-PTNLD28-TUMOR_peak_10482	chr1	226310151	226310660	+	10.97358	NA	Intergenic	CpG	59977	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_61330	chr20	44035002	44035374	+	10.97358	NA	promoter-TSS (NM_001048224)	promoter-TSS (NM_001048224)	-40	NM_001048223	55861	Hs.730643	NM_018478	HPRD:12763	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_23466	chr12	26424833	26425081	+	10.97141	NA	Intergenic	Intergenic	76451	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_19750	chr11	70496542	70496691	+	10.97033	NA	intron (NR_110766, intron 2 of 8)	intron (NR_110766, intron 2 of 8)	11329	NM_133266	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_98499	chr8	42660537	42660684	+	10.97033	NA	Intergenic	Intergenic	-36681	NM_004198	8973	Hs.103128	NM_004198	HPRD:06056	CHRNA6	CHNRA6	cholinergic receptor, nicotinic, alpha 6 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_27552	chr13	27031417	27031693	+	10.97033	NA	Intergenic	Intergenic	-100285	NM_001291965	10810	Hs.618732	NM_006646	HPRD:05458	WASF3	Brush-1|SCAR3|WAVE3	WAS protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_27111	chr12	127757372	127757615	+	10.97033	NA	Intergenic	Intergenic	67124	NR_110057	101927616	Hs.637827	NR_110057	ENSG00000256362	LOC101927616	-	uncharacterized LOC101927616	ncRNA
19-PTNLD28-TUMOR_peak_12637	chr10	29353114	29353544	+	10.97033	NA	Intergenic	Intergenic	217992	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
19-PTNLD28-TUMOR_peak_44864	chr18	20451882	20451990	+	10.97033	NA	Intergenic	LTR33|LTR|ERVL	-61359	NM_002894	5932	Hs.546282	NM_002894	HPRD:04990	RBBP8	COM1|CTIP|JWDS|RIM|SAE2|SCKL2	retinoblastoma binding protein 8	protein-coding
19-PTNLD28-TUMOR_peak_61344	chr20	44174840	44174988	+	10.97033	NA	intron (NM_020398, intron 1 of 3)	MIRb|SINE|MIR	1151	NM_020398	57119	Hs.121084	NM_020398	HPRD:10615	EPPIN	CT71|CT72|SPINLW1|WAP7|WFDC7|dJ461P17.2	epididymal peptidase inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_52225	chr2	38733023	38733211	+	10.97033	NA	intron (NR_110259, intron 1 of 4)	LTR16B1|LTR|ERVL	9765	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
19-PTNLD28-TUMOR_peak_7429	chr1	157743602	157743742	+	10.97033	NA	intron (NR_125358, intron 2 of 7)	intron (NR_125358, intron 2 of 7)	3250	NM_030764	79368	Hs.437393	NM_030764	HPRD:07351	FCRL2	CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C	Fc receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_68715	chr3	63121170	63121311	+	10.97033	NA	Intergenic	HAL1|LINE|L1	32876	NR_027104	285401	Hs.211125	NR_027104	ENSG00000244342	LINC00698	-	long intergenic non-protein coding RNA 698	ncRNA
19-PTNLD28-TUMOR_peak_33509	chr15	48937763	48937982	+	10.97033	NA	5' UTR (NM_000138, exon 1 of 66)	5' UTR (NM_000138, exon 1 of 66)	113	NM_000138	2200	Hs.591133	NM_000138	HPRD:00618	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
19-PTNLD28-TUMOR_peak_57384	chr2	187616659	187616785	+	10.97033	NA	intron (NM_177454, intron 5 of 7)	MLT1K|LTR|ERVL-MaLR	57933	NM_177454	165215	Hs.28872	NM_177454	HPRD:13907	FAM171B	KIAA1946	family with sequence similarity 171, member B	protein-coding
19-PTNLD28-TUMOR_peak_88636	chr6	87441543	87441658	+	10.97033	NA	Intergenic	L1PA3|LINE|L1	-205424	NM_000865	3354	Hs.1611	NM_000865	HPRD:01635	HTR1E	5-HT1E	5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_44417	chr18	7117708	7117902	+	10.97033	NA	promoter-TSS (NM_005559)	promoter-TSS (NM_005559)	8	NM_005559	284217	Hs.270364	NM_005559	HPRD:01033	LAMA1	LAMA|S-LAM-alpha	laminin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_88564	chr6	84562988	84563335	+	10.97033	NA	promoter-TSS (NR_103525)	promoter-TSS (NR_103525)	-101	NR_103525	134701	Hs.149454	NM_001009994	HPRD:16658	RIPPLY2	C6orf159|dJ237I15.1	ripply transcriptional repressor 2	protein-coding
19-PTNLD28-TUMOR_peak_83713	chr5	167513431	167513575	+	10.97033	NA	intron (NM_001122679, intron 7 of 28)	intron (NM_001122679, intron 7 of 28)	145874	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_69949	chr3	115342303	115342467	+	10.97033	NA	5' UTR (NM_001130064, exon 1 of 4)	5' UTR (NM_001130064, exon 1 of 4)	234	NM_001130064	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_34038	chr15	66133527	66133680	+	10.97033	NA	Intergenic	FLAM_A|SINE|Alu	-28194	NM_001206836	8766	Hs.321541	NM_004663	HPRD:05715	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_38675	chr16	73049547	73049783	+	10.97033	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	32609	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_29298	chr14	20319647	20319778	+	10.96782	NA	Intergenic	Intergenic	-24715	NM_001005501	390431	Hs.551345	NM_001005501	HPRD:14980	OR4K2	OR14-15	olfactory receptor, family 4, subfamily K, member 2	protein-coding
19-PTNLD28-TUMOR_peak_38459	chr16	69051486	69051655	+	10.96782	NA	intron (NM_024562, intron 15 of 17)	MIR3|SINE|MIR	-87897	NM_001199280	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_11700	chr10	3356073	3356243	+	10.96782	NA	Intergenic	Intergenic	-141125	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_36040	chr16	4793365	4793617	+	10.96782	NA	intron (NM_139170, intron 5 of 9)	intron (NM_139170, intron 5 of 9)	-9113	NR_040252	124401	Hs.654859	NM_133450	HPRD:13909	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_52982	chr2	61997535	61997713	+	10.96782	NA	Intergenic	Intergenic	83654	NR_037710	84140	Hs.440466	NM_032180	ENSG00000170264	FAM161A	RP28	family with sequence similarity 161, member A	protein-coding
19-PTNLD28-TUMOR_peak_65808	chr22	43539123	43539532	+	10.96782	NA	promoter-TSS (NM_014507)	promoter-TSS (NM_014507)	76	NM_173467	27349	Hs.349111	NM_014507	HPRD:14786	MCAT	FASN2C|MCT|MT|NET62|fabD	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_71258	chr3	139693679	139693993	+	10.96782	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	39809	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_73531	chr3	195648150	195648741	+	10.96782	NA	Intergenic	Intergenic	-12565	NM_005781	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_105574	chr9	116994083	116994568	+	10.96689	NA	intron (NM_032888, intron 16 of 60)	intron (NM_032888, intron 16 of 60)	22611	NR_030255	619556		NR_030255		MIR455	MIRN455|hsa-mir-455	microRNA 455	ncRNA
19-PTNLD28-TUMOR_peak_38283	chr16	67047920	67048155	+	10.96491	NA	Intergenic	CpG	13621	NM_001190201	283848	Hs.346947	NM_173815	HPRD:07116	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
19-PTNLD28-TUMOR_peak_90528	chr6	167654927	167655051	+	10.96491	NA	Intergenic	Intergenic	-49814	NM_001143947	54346	Hs.567508	NM_018974	HPRD:12148	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_34680	chr15	78286849	78287025	+	10.96491	NA	promoter-TSS (NR_026998)	promoter-TSS (NR_026998)	-370	NR_026998	91450	Hs.406766	NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
19-PTNLD28-TUMOR_peak_90697	chr6	171044230	171044365	+	10.96469	NA	Intergenic	MER4D1|LTR|ERV1	-150517	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_23857	chr12	43353991	43354102	+	10.96397	NA	Intergenic	Intergenic	-313746	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_18974	chr11	62212122	62212353	+	10.96397	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	25730	NM_003357	7356	Hs.523732	NM_003357	HPRD:01884	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
19-PTNLD28-TUMOR_peak_39528	chr16	90086434	90086687	+	10.96160	NA	promoter-TSS (NM_001288708)	promoter-TSS (NM_001288708)	-21	NM_001288708	79007	Hs.301394	NM_024043	HPRD:08327	DBNDD1	-	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72775	chr3	184080076	184080472	+	10.95472	NA	promoter-TSS (NM_004366)	promoter-TSS (NM_004366)	-497	NM_001278698	5437	Hs.432574	NM_006232	HPRD:09082	POLR2H	RPABC3|RPB17|RPB8	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding
19-PTNLD28-TUMOR_peak_87416	chr6	41410566	41410854	+	10.94617	NA	Intergenic	CpG	-59472	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_13658	chr10	54074059	54074399	+	10.94617	NA	promoter-TSS (NR_038277)	promoter-TSS (NR_038277)	188	NM_012242	22943	Hs.40499	NM_012242	HPRD:05544	DKK1	DKK-1|SK	dickkopf WNT signaling pathway inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_94998	chr7	122526435	122526973	+	10.94617	NA	5' UTR (NM_001167940, exon 1 of 30)	5' UTR (NM_001167940, exon 1 of 30)	109	NM_001167940	93664	Hs.649459	NM_017954	HPRD:12996	CADPS2	-	Ca++-dependent secretion activator 2	protein-coding
19-PTNLD28-TUMOR_peak_38427	chr16	68562626	68562787	+	10.94617	NA	Intergenic	Intergenic	-10955	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_81871	chr5	124380335	124380489	+	10.94617	NA	intron (NR_109882, intron 2 of 5)	MLT1J|LTR|ERVL-MaLR	7888	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA
19-PTNLD28-TUMOR_peak_54411	chr2	99119208	99119305	+	10.94617	NA	intron (NM_001134225, intron 1 of 24)	intron (NM_001134225, intron 1 of 24)	57935	NM_001134224	3631	Hs.469386	NM_001566	HPRD:02949	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase, type I, 107kDa	protein-coding
19-PTNLD28-TUMOR_peak_53380	chr2	70994263	70994666	+	10.94617	NA	intron (NM_017482, intron 1 of 12)	CpG	383	NM_001185054	119	Hs.188528	NM_001617	HPRD:00037	ADD2	ADDB	adducin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_66249	chr3	4763892	4764020	+	10.94617	NA	intron (NM_001168272, intron 39 of 60)	intron (NM_001168272, intron 39 of 60)	29318	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_5608	chr1	113270480	113270626	+	10.94447	NA	TTS (NM_182759)	TTS (NM_182759)	7364	NM_001004440	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_28154	chr13	47127146	47127295	+	10.94447	NA	promoter-TSS (NM_001164213)	promoter-TSS (NM_001164213)	-76	NM_001164211	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_91635	chr7	23720081	23720225	+	10.94447	NA	intron (NM_001300932, intron 1 of 5)	intron (NM_001300932, intron 1 of 5)	420	NM_001300932	340277	Hs.592178	NM_199136	HPRD:14706	FAM221A	C7orf46	family with sequence similarity 221, member A	protein-coding
19-PTNLD28-TUMOR_peak_36425	chr16	14476587	14476698	+	10.94447	NA	Intergenic	L1MB5|LINE|L1	73500	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_85598	chr6	15505346	15505513	+	10.94353	NA	intron (NM_001267040, intron 9 of 17)	intron (NM_001267040, intron 9 of 17)	157860	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47507	chr19	13266381	13266614	+	10.93982	NA	TTS (NM_004907)	TTS (NM_004907)	5215	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_91176	chr7	6522715	6522901	+	10.93830	NA	intron (NM_001100603, intron 1 of 3)	intron (NM_001100603, intron 1 of 3)	1041	NM_001100603	11014	Hs.654552	NM_006854	HPRD:06598	KDELR2	ELP-1|ERD2.2	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_22856	chr12	7261776	7261967	+	10.93830	NA	promoter-TSS (NM_001297640)	promoter-TSS (NM_001297640)	3	NM_001297640	51279	Hs.631730	NM_016546	HPRD:07093	C1RL	C1RL1|C1RLP|C1r-LP|CLSPa	complement component 1, r subcomponent-like	protein-coding
19-PTNLD28-TUMOR_peak_78693	chr5	1644637	1644759	+	10.93815	NA	Intergenic	Intergenic	-10578	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53162	chr2	65867643	65867846	+	10.93815	NA	Intergenic	Intergenic	-208088	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_26240	chr12	110439553	110439707	+	10.93815	NA	intron (NM_033121, intron 1 of 14)	intron (NM_033121, intron 1 of 14)	2395	NM_033121	88455	Hs.528703	NM_033121	HPRD:12458	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
19-PTNLD28-TUMOR_peak_9637	chr1	205461373	205461482	+	10.93553	NA	Intergenic	Intergenic	-12257	NM_212503	5129	Hs.445402	NM_002596	HPRD:01354	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin-dependent kinase 18	protein-coding
19-PTNLD28-TUMOR_peak_1852	chr1	28679981	28680256	+	10.93330	NA	Intergenic	MIRb|SINE|MIR	-15975	NM_001048183	65979	Hs.225641	NM_023923	HPRD:07816	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
19-PTNLD28-TUMOR_peak_26746	chr12	121889871	121890022	+	10.93330	NA	intron (NM_001005366, intron 13 of 22)	L1MB2|LINE|L1	-7791	NR_106957	102465665		NR_106957		MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
19-PTNLD28-TUMOR_peak_82177	chr5	133162789	133163171	+	10.93330	NA	Intergenic	Intergenic	141426	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_24314	chr12	52550686	52550801	+	10.93330	NA	Intergenic	Intergenic	35041	NM_182507	144501	Hs.140978	NM_182507	HPRD:14068	KRT80	KB20	keratin 80	protein-coding
19-PTNLD28-TUMOR_peak_12808	chr10	32233496	32233672	+	10.93330	NA	Intergenic	Intergenic	-15780	NM_001270698	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_78272	chr4	184749372	184749554	+	10.93330	NA	Intergenic	Intergenic	-77046	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_34504	chr15	74943573	74943996	+	10.93330	NA	intron (NM_001142444, intron 5 of 7)	intron (NM_001142444, intron 5 of 7)	36449	NM_001130028	1198	Hs.584748	NM_001292	HPRD:04290	CLK3	PHCLK3|PHCLK3/152	CDC-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_33352	chr15	44069509	44069943	+	10.93192	NA	promoter-TSS (NM_025165)	promoter-TSS (NM_025165)	-224	NM_025165	80237	Hs.706346	NM_025165	HPRD:10933	ELL3	-	elongation factor RNA polymerase II-like 3	protein-coding
19-PTNLD28-TUMOR_peak_48073	chr19	18561854	18562089	+	10.93192	NA	intron (NM_006532, intron 7 of 11)	intron (NM_006532, intron 7 of 11)	-12860	NM_001170938	51477	Hs.405873	NM_016368	HPRD:17163	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_26912	chr12	123917611	123917721	+	10.93192	NA	intron (NM_145058, intron 1 of 3)	AluSc|SINE|Alu	3598	NM_145058	196383	Hs.488173	NM_145058	HPRD:10084	RILPL2	RLP2	Rab interacting lysosomal protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_63182	chr21	33785421	33785714	+	10.93178	NA	intron (NR_104472, intron 1 of 6)	CpG	822	NR_104472	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_64571	chr22	21946102	21946287	+	10.93155	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	24175	NR_046082	7332	Hs.108104	NM_003347	HPRD:04762	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin-conjugating enzyme E2L 3	protein-coding
19-PTNLD28-TUMOR_peak_93997	chr7	94213543	94213722	+	10.93155	NA	TTS (NM_003919)	TTS (NM_003919)	71889	NM_001099400	8910	Hs.371199	NM_003919	HPRD:04999	SGCE	DYT11|ESG	sarcoglycan, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_79162	chr5	17413461	17413827	+	10.93155	NA	Intergenic	Intergenic	-26225	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_96069	chr7	143412201	143412461	+	10.93155	NA	promoter-TSS (NM_001130026)	promoter-TSS (NM_001130026)	-608	NM_001130026	285966	Hs.743565	NM_173678	HPRD:07117	FAM115C	FAM139A	family with sequence similarity 115, member C	protein-coding
19-PTNLD28-TUMOR_peak_65095	chr22	31003071	31003311	+	10.93155	NA	promoter-TSS (NM_001282328)	promoter-TSS (NM_001282328)	121	NM_000355	6948	Hs.417948	NM_000355	HPRD:02037	TCN2	D22S676|D22S750|II|TC|TC II|TC-2|TC2|TCII	transcobalamin II	protein-coding
19-PTNLD28-TUMOR_peak_100096	chr8	110632961	110633241	+	10.93155	NA	intron (NM_001099746, intron 1 of 5)	intron (NM_001099746, intron 1 of 5)	22318	NM_001099756	55638	Hs.390738	NM_017786	HPRD:07902	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
19-PTNLD28-TUMOR_peak_91286	chr7	11871264	11871814	+	10.93155	NA	exon (NM_015204, exon 1 of 27)	exon (NM_015204, exon 1 of 27)	285	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin, type I, domain containing 7A	protein-coding
19-PTNLD28-TUMOR_peak_65017	chr22	30107021	30107197	+	10.93155	NA	Intergenic	Intergenic	-9235	NM_182527	164633	Hs.643608	NM_182527	HPRD:12995	CABP7	CALN2	calcium binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_77520	chr4	149244733	149244994	+	10.93155	NA	intron (NM_000901, intron 2 of 8)	L1PA2|LINE|L1	118809	NM_000901	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92656	chr7	55571892	55572427	+	10.93155	NA	intron (NM_001284284, intron 2 of 4)	intron (NM_001284284, intron 2 of 4)	33250	NM_001284284	81552	Hs.488307	NM_030796	HPRD:08526	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
19-PTNLD28-TUMOR_peak_32991	chr15	33873344	33873501	+	10.93155	NA	intron (NM_001243996, intron 13 of 102)	intron (NM_001243996, intron 13 of 102)	270245	NM_001243996	6263	Hs.709373	NM_001036	HPRD:01620	RYR3	RYR-3	ryanodine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_78547	chr5	14825	14947	+	10.93155	NA	Intergenic	LTR10C|LTR|ERV1	-125487	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 4B	protein-coding
19-PTNLD28-TUMOR_peak_42017	chr17	46093584	46093724	+	10.93155	NA	Intergenic	Intergenic	20959	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	ncRNA
19-PTNLD28-TUMOR_peak_2413	chr1	36621691	36621882	+	10.92976	NA	promoter-TSS (NM_001270895)	promoter-TSS (NM_001270895)	-132	NM_001270895	27095	Hs.523131	NM_014408	HPRD:11644	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
19-PTNLD28-TUMOR_peak_24407	chr12	53265034	53265165	+	10.92976	NA	Intergenic	Intergenic	-22321	NM_173352	196374	Hs.665267	NM_173352	HPRD:17171	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
19-PTNLD28-TUMOR_peak_58288	chr2	217091930	217092258	+	10.92618	NA	Intergenic	SVA_E|Other|Other	10482	NR_037701	150967	Hs.56876	NM_001199924	ENSG00000260804	PKI55	-	DKFZp434H1419	ncRNA
19-PTNLD28-TUMOR_peak_62818	chr21	16795183	16795402	+	10.92618	NA	Intergenic	HAL1|LINE|L1	-307052	NM_013396	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_94156	chr7	98255805	98255964	+	10.92618	NA	intron (NM_002523, intron 3 of 4)	intron (NM_002523, intron 3 of 4)	9287	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_22166	chr11	130259960	130260101	+	10.92618	NA	Intergenic	Intergenic	38509	NM_007037	11095	Hs.271605	NM_007037	HPRD:05531	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif, 8	protein-coding
19-PTNLD28-TUMOR_peak_58205	chr2	213511538	213511753	+	10.92618	NA	Intergenic	Intergenic	-108293	NM_005235	2066	Hs.390729	NM_005235	HPRD:02767	ERBB4	ALS19|HER4|p180erbB4	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_56641	chr2	161712705	161712827	+	10.92618	NA	Intergenic	L1PA2|LINE|L1	-280700	NM_133484	10010	Hs.132257	NM_004180	HPRD:04870	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member-associated NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_32114	chr14	102512801	102512965	+	10.92618	NA	intron (NM_001376, intron 72 of 77)	intron (NM_001376, intron 72 of 77)	40629	NM_005348	3320	Hs.525600	NM_005348	HPRD:00777	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90kDa alpha (cytosolic), class A member 1	protein-coding
19-PTNLD28-TUMOR_peak_69837	chr3	112534998	112535150	+	10.92618	NA	intron (NM_001008784, intron 5 of 5)	MLT1H|LTR|ERVL-MaLR	29723	NM_001199215	344807	Hs.531814	NM_001008784	HPRD:16691	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_40249	chr17	13448152	13448322	+	10.92618	NA	intron (NM_006042, intron 1 of 1)	intron (NM_006042, intron 1 of 1)	57007	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_20466	chr11	86522853	86522981	+	10.92618	NA	TTS (NM_007173)	TTS (NM_007173)	11635	NM_001293178	11098	Hs.25338	NM_007173	HPRD:07149	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine, 23	protein-coding
19-PTNLD28-TUMOR_peak_79500	chr5	36439023	36439312	+	10.92618	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-137156	NM_145000	202151	Hs.729817	NM_145000	HPRD:08064	RANBP3L	-	RAN binding protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_68444	chr3	54477553	54478007	+	10.92618	NA	intron (NM_018398, intron 4 of 37)	intron (NM_018398, intron 4 of 37)	196104	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_65308	chr22	36461724	36462174	+	10.92618	NA	Intergenic	CpG	-37364	NM_001082578	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_12320	chr10	21645436	21645637	+	10.92618	NA	Intergenic	AluSc|SINE|Alu	140034	NR_031736	100302129		NR_031736		MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
19-PTNLD28-TUMOR_peak_15000	chr10	96989458	96989721	+	10.92618	NA	TTS (NM_207321)	TTS (NM_207321)	35632	NM_207321	142827	Hs.134229	NM_207321	HPRD:12565	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium-chain family member 6	protein-coding
19-PTNLD28-TUMOR_peak_91600	chr7	23251232	23251503	+	10.92618	NA	Intergenic	LTR33B|LTR|ERVL	29921	NM_007342	11097	Hs.408241	NM_007342	HPRD:14855	NUPL2	CG1|NLP-1|NLP_1|hCG1	nucleoporin like 2	protein-coding
19-PTNLD28-TUMOR_peak_19740	chr11	70303361	70303521	+	10.92618	NA	Intergenic	Intergenic	58829	NM_138565	2017	Hs.596164	NM_005231	HPRD:01268	CTTN	EMS1	cortactin	protein-coding
19-PTNLD28-TUMOR_peak_15740	chr10	115704923	115705096	+	10.92618	NA	Intergenic	Intergenic	90618	NM_198514	374354	Hs.369924	NM_198514		NHLRC2	-	NHL repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_7795	chr1	163144738	163144846	+	10.92618	NA	intron (NM_001254748, intron 2 of 5)	intron (NM_001254748, intron 2 of 5)	13327	NR_110699	101928404	Hs.683933	NR_110699	ENSG00000232892	LOC101928404	-	uncharacterized LOC101928404	ncRNA
19-PTNLD28-TUMOR_peak_67910	chr3	46124488	46124630	+	10.92618	NA	Intergenic	Intergenic	-55580	NM_005283	2829	Hs.248116	NM_005283	HPRD:02774	XCR1	CCXCR1|GPR5	chemokine (C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_105064	chr9	104467524	104467624	+	10.92618	NA	intron (NM_133445, intron 1 of 8)	LTR1|LTR|ERV1	33288	NM_133445	116443	Hs.654783	NM_133445	HPRD:09443	GRIN3A	GluN3A|NMDAR-L|NR3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	protein-coding
19-PTNLD28-TUMOR_peak_13480	chr10	49070531	49070810	+	10.92618	NA	Intergenic	Intergenic	-118041	NR_003611	399761	Hs.571994	NM_001040053	ENSG00000204164	BMS1P5	BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3	BMS1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_65234	chr22	33695659	33695846	+	10.92618	NA	intron (NM_004737, intron 13 of 15)	MIR|SINE|MIR	136903	NR_039921	100616295		NR_039921		MIR4764	-	microRNA 4764	ncRNA
19-PTNLD28-TUMOR_peak_62373	chr20	57404616	57404959	+	10.92618	NA	intron (NR_002785, intron 4 of 4)	L2c|LINE|L2	-10008	NM_016592	2778	Hs.125898	NM_000516	HPRD:00761	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH	GNAS complex locus	protein-coding
19-PTNLD28-TUMOR_peak_102087	chr9	5801022	5801235	+	10.92618	NA	intron (NM_024896, intron 11 of 14)	intron (NM_024896, intron 11 of 14)	31953	NM_024896	79956	Hs.591078	NM_024896	HPRD:17227	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_58307	chr2	217420048	217420219	+	10.92462	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	51528	NR_110392	101928232	Hs.694592	NR_110392	ENSG00000224391	LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
19-PTNLD28-TUMOR_peak_53005	chr2	62638226	62638386	+	10.92462	NA	Intergenic	Intergenic	95298	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_49157	chr19	41802378	41802772	+	10.92462	NA	intron (NM_007040, intron 10 of 14)	intron (NM_007040, intron 10 of 14)	-13519	NM_052848	90324	Hs.437497	NM_052848	HPRD:14467	CCDC97	-	coiled-coil domain containing 97	protein-coding
19-PTNLD28-TUMOR_peak_63736	chr21	43542071	43542220	+	10.92462	NA	intron (NM_001004416, intron 16 of 22)	intron (NM_001004416, intron 16 of 22)	-13501	NR_027243	150147	Hs.558646	NM_152507	HPRD:10740	C21orf128	-	chromosome 21 open reading frame 128	ncRNA
19-PTNLD28-TUMOR_peak_54720	chr2	107199073	107199244	+	10.92462	NA	Intergenic	Intergenic	-114357	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_28027	chr13	43566101	43566580	+	10.92462	NA	promoter-TSS (NM_033255)	promoter-TSS (NM_033255)	67	NM_001002264	94240	Hs.546467	NM_033255	HPRD:06309	EPSTI1	BRESI1	epithelial stromal interaction 1 (breast)	protein-coding
19-PTNLD28-TUMOR_peak_28751	chr13	97769140	97769258	+	10.92462	NA	Intergenic	Intergenic	62677	NR_125725	103625683	Hs.679591	NR_125725		LINC00456	-	long intergenic non-protein coding RNA 456	ncRNA
19-PTNLD28-TUMOR_peak_37063	chr16	28752089	28752228	+	10.92043	NA	Intergenic	CpG	-11598	NM_001287250	100507607	Hs.710214	NM_001287250		NPIPB9	-	nuclear pore complex interacting protein family, member B9	protein-coding
19-PTNLD28-TUMOR_peak_64553	chr22	21823973	21824098	+	10.91769	NA	exon (NM_001207052, exon 9 of 9)	exon (NM_001207052, exon 9 of 9)	2576	NM_001207052	645426	Hs.376511	NM_001207052		TMEM191C	-	transmembrane protein 191C	protein-coding
19-PTNLD28-TUMOR_peak_82744	chr5	141021564	141021711	+	10.91751	NA	intron (NM_033449, intron 18 of 19)	intron (NM_033449, intron 18 of 19)	5120	NM_001130029	285613	Hs.120094	NM_173828	HPRD:12830	RELL2	C5orf16	RELT-like 2	protein-coding
19-PTNLD28-TUMOR_peak_104895	chr9	100686059	100686212	+	10.91751	NA	Intergenic	Intergenic	-1283	NM_016481	51531	Hs.9196	NM_016481	HPRD:12945	C9orf156	HSPC219|NAP1	chromosome 9 open reading frame 156	protein-coding
19-PTNLD28-TUMOR_peak_70568	chr3	127413358	127413464	+	10.91751	NA	intron (NM_001003794, intron 7 of 7)	intron (NM_001003794, intron 7 of 7)	21630	NR_033429	80325	Hs.107812	NM_032548	HPRD:10513	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_15439	chr10	105507819	105508062	+	10.91381	NA	intron (NR_038940, intron 1 of 2)	MIR|SINE|MIR	1403	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40031	chr17	7819628	7819797	+	10.91381	NA	promoter-TSS (NR_024349)	promoter-TSS (NR_024349)	-447	NR_024349	284023	Hs.744470	NR_024349	ENSG00000179859	LOC284023	-	uncharacterized LOC284023	ncRNA
19-PTNLD28-TUMOR_peak_102747	chr9	33817756	33817872	+	10.91381	NA	exon (NM_017811, exon 1 of 5)	exon (NM_017811, exon 1 of 5)	632	NM_017811	54926	Hs.643648	NM_017811	HPRD:15602	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin-conjugating enzyme E2R 2	protein-coding
19-PTNLD28-TUMOR_peak_7635	chr1	160967248	160967368	+	10.91082	NA	3' UTR (NM_016946, exon 10 of 10)	3' UTR (NM_016946, exon 10 of 10)	23825	NM_016946	50848	Hs.517293	NM_016946	HPRD:12038	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
19-PTNLD28-TUMOR_peak_40406	chr17	17641448	17641639	+	10.91082	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	41300	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_103971	chr9	79432504	79432688	+	10.91082	NA	intron (NM_015225, intron 6 of 18)	MLT1J1|LTR|ERVL-MaLR	53242	NR_015342	50652	Hs.663766	NR_015342	ENSG00000225937	PCA3	DD3|NCRNA00019|PCAT3	prostate cancer associated 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_46866	chr19	5805927	5806075	+	10.91082	NA	Intergenic	CpG	-14752	NM_001161619	56931	Hs.284297	NM_020175	HPRD:14252	DUS3L	DUS3	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_74327	chr4	8230375	8230553	+	10.91082	NA	intron (NM_018986, intron 12 of 17)	intron (NM_018986, intron 12 of 17)	29404	NM_018986	54436	Hs.479116	NM_018986	HPRD:11556	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_9399	chr1	203141452	203141568	+	10.91082	NA	intron (NM_004997, intron 3 of 10)	intron (NM_004997, intron 3 of 10)	3432	NM_004997	4608	Hs.927	NM_004997	HPRD:01186	MYBPH	-	myosin binding protein H	protein-coding
19-PTNLD28-TUMOR_peak_930	chr1	14464706	14464926	+	10.91082	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	388940	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_69159	chr3	75899713	75899900	+	10.90766	NA	Intergenic	L1PA5|LINE|L1	-65072	NM_001290210	100131827	Hs.556877	NM_001128223	ENSG00000227124	ZNF717	X17|ZNF838	zinc finger protein 717	protein-coding
19-PTNLD28-TUMOR_peak_27212	chr12	131651912	131652109	+	10.90766	NA	intron (NR_026670, intron 1 of 4)	intron (NR_026670, intron 1 of 4)	2454	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_85012	chr6	4914164	4914309	+	10.90766	NA	intron (NR_026590, intron 4 of 8)	L1MCc|LINE|L1	24010	NM_001143971	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_40011	chr17	7728685	7728883	+	10.90766	NA	intron (NM_020877, intron 76 of 84)	intron (NM_020877, intron 76 of 84)	-14451	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
19-PTNLD28-TUMOR_peak_30816	chr14	65372805	65373091	+	10.90766	NA	Intergenic	L2b|LINE|L2	-8131	NM_001204064	91612	Hs.731537	NM_145165	HPRD:12262	CHURC1	C14orf52|chch	churchill domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89626	chr6	137736864	137736988	+	10.90766	NA	Intergenic	Intergenic	78605	NM_175747	167826	Hs.195398	NM_175747	HPRD:17662	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_18499	chr11	47939421	47939808	+	10.90766	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-62496	NM_001098503	5795	Hs.318547	NM_002843	HPRD:02955	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type, J	protein-coding
19-PTNLD28-TUMOR_peak_108544	chrX	63477700	63477832	+	10.90766	NA	Intergenic	L1PA3|LINE|L1	-27255	NM_130388	142689	Hs.56281	NM_130388	HPRD:06451	ASB12	-	ankyrin repeat and SOCS box containing 12	protein-coding
19-PTNLD28-TUMOR_peak_83697	chr5	167150388	167150513	+	10.90766	NA	intron (NM_001122679, intron 2 of 28)	L2a|LINE|L2	438607	NM_001122679	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_98201	chr8	37584774	37585072	+	10.90766	NA	Intergenic	Intergenic	-9174	NM_007175	11160	Hs.705490	NM_007175	HPRD:15437	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18	ER lipid raft associated 2	protein-coding
19-PTNLD28-TUMOR_peak_63141	chr21	32919223	32919483	+	10.90766	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	11937	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_61054	chr20	38724174	38724297	+	10.90766	NA	Intergenic	HERVH-int|LTR|ERV1	91132	NR_109937	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_81034	chr5	84959262	84959421	+	10.90766	NA	Intergenic	L1PA2|LINE|L1	-618921	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	neuroblastoma breakpoint family, member 22, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109034	chrX	103286913	103287396	+	10.90766	NA	intron (NR_031657, intron 1 of 1).2	L1PA2|LINE|L1	-7362	NM_001164416	286436	Hs.376474	NM_001164416	ENSG00000101812	H2BFM	-	H2B histone family, member M	protein-coding
19-PTNLD28-TUMOR_peak_29783	chr14	33150935	33151086	+	10.90766	NA	intron (NM_004274, intron 8 of 13)	AluSx3|SINE|Alu	-257449	NM_001164749	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_77348	chr4	142607636	142607738	+	10.90766	NA	intron (NM_000585, intron 2 of 7)	MIR|SINE|MIR	49938	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_13932	chr10	67329932	67330337	+	10.90766	NA	Intergenic	Intergenic	-1049	NR_120647	101928913	Hs.568857	NR_120647		LINC01515	-	long intergenic non-protein coding RNA 1515	ncRNA
19-PTNLD28-TUMOR_peak_11877	chr10	6332723	6332844	+	10.90766	NA	Intergenic	L1MCa|LINE|L1	-35724	NR_040079	399715		NR_040079	ENSG00000215244	LOC399715	-	uncharacterized LOC399715	ncRNA
19-PTNLD28-TUMOR_peak_94969	chr7	120432934	120433101	+	10.90766	NA	intron (NM_012338, intron 7 of 7)	L3|LINE|CR1	65160	NM_012338	23554	Hs.16529	NM_012338	HPRD:15509	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
19-PTNLD28-TUMOR_peak_17084	chr11	10395071	10395290	+	10.90766	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	65320	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
19-PTNLD28-TUMOR_peak_24276	chr12	52278541	52278678	+	10.90766	NA	Intergenic	LTR10A|LTR|ERV1	-3184	NM_001130015	341405	Hs.433492	NM_182608	HPRD:12465	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
19-PTNLD28-TUMOR_peak_97895	chr8	28186782	28186945	+	10.90766	NA	intron (NM_006228, intron 2 of 3)	intron (NM_006228, intron 2 of 3)	-9302	NM_001284244	5368	Hs.88218	NM_006228	HPRD:03268	PNOC	PPNOC	prepronociceptin	protein-coding
19-PTNLD28-TUMOR_peak_27949	chr13	41219508	41219647	+	10.90766	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	21157	NM_002015	2308	Hs.370666	NM_002015	HPRD:00645	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
19-PTNLD28-TUMOR_peak_40130	chr17	8868849	8869198	+	10.90766	NA	promoter-TSS (NM_001251852)	promoter-TSS (NM_001251852)	6	NM_001251853	23533	Hs.278901	NM_014308	HPRD:11433	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase, regulatory subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_41195	chr17	36184648	36184784	+	10.90766	NA	Intergenic	Intergenic	59647	NR_024178	284100	Hs.434159	NM_001129906	ENSG00000267671	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_10121	chr1	220013106	220013289	+	10.90574	NA	Intergenic	L1PA3|LINE|L1	-33422	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_22994	chr12	9892958	9893204	+	10.90574	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-7186	NM_001253750	160365	Hs.560087	NM_172004	HPRD:16247	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_5453	chr1	110629717	110629890	+	10.90574	NA	Intergenic	Intergenic	-16481	NM_006492	257	Hs.669953	NM_006492		ALX3	FND|FND1	ALX homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_59339	chr2	242818071	242818207	+	10.90574	NA	Intergenic	LTR13|LTR|ERVK	-5375	NR_110220	101927289	Hs.130180	NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
19-PTNLD28-TUMOR_peak_18799	chr11	60606275	60606507	+	10.90574	NA	Intergenic	Intergenic	-3038	NM_024098	79080	Hs.4253	NM_024098	HPRD:08322	CCDC86	-	coiled-coil domain containing 86	protein-coding
19-PTNLD28-TUMOR_peak_7161	chr1	155098431	155098928	+	10.90427	NA	Intergenic	CpG	-1670	NM_004428	1942	Hs.516664	NM_004428	HPRD:01858	EFNA1	B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4	ephrin-A1	protein-coding
19-PTNLD28-TUMOR_peak_5476	chr1	110852445	110852630	+	10.90357	NA	intron (NR_036595, intron 2 of 3)	intron (NR_036595, intron 2 of 3)	29256	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	ncRNA
19-PTNLD28-TUMOR_peak_50843	chr2	3474732	3474895	+	10.90357	NA	intron (NM_016030, intron 9 of 11)	intron (NM_016030, intron 9 of 11)	48537	NM_018269	55256	Hs.502773	NM_018269	HPRD:17607	ADI1	APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_8729	chr1	183149507	183149672	+	10.89964	NA	Intergenic	Intergenic	-5585	NM_005562	3918	Hs.591484	NM_005562	HPRD:01031	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_68602	chr3	58420798	58420968	+	10.89964	NA	Intergenic	Intergenic	-1304	NM_001173468	5162	Hs.161357	NM_000925	HPRD:01530	PDHB	PDHBD|PDHE1-B|PHE1B	pyruvate dehydrogenase (lipoamide) beta	protein-coding
19-PTNLD28-TUMOR_peak_25223	chr12	70173003	70173151	+	10.89964	NA	intron (NM_001024647, intron 1 of 8)	L1HS|LINE|L1	345	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_86148	chr6	26422216	26422337	+	10.89964	NA	intron (NR_027795, intron 1 of 6)	intron (NR_027795, intron 1 of 6)	657	NR_027795	54718	Hs.729655	NM_024018	HPRD:12546	BTN2A3P	BTN2.3|BTN2A3	butyrophilin, subfamily 2, member A3, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_82583	chr5	139361828	139362394	+	10.89964	NA	intron (NM_001184935, intron 1 of 7)	intron (NM_001184935, intron 1 of 7)	60773	NM_004883	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_94417	chr7	101006300	101006463	+	10.89964	NA	exon (NM_001278563, exon 1 of 13)	exon (NM_001278563, exon 1 of 13)	280	NM_001278563	136227	Hs.654854	NM_133457	HPRD:16405	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen, type XXVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_32506	chr15	21968602	21968706	+	10.89247	NA	Intergenic	AluJb|SINE|Alu	-27915	NR_027053	646214	Hs.510697	NR_027053		LOC646214	-	p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_47707	chr19	15333867	15334035	+	10.88947	NA	Intergenic	Intergenic	9280	NM_024794	79852	Hs.156457	NM_024794	HPRD:12410	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
19-PTNLD28-TUMOR_peak_887	chr1	13363802	13363904	+	10.88947	NA	intron (NM_001013407, intron 1 of 3).2	intron (NM_001013407, intron 1 of 3).2	-1033	NM_001300891	101929983		NM_001300891		LOC101929983	-	PRAME family member 9/15-like	protein-coding
19-PTNLD28-TUMOR_peak_16841	chr11	5710824	5711160	+	10.88947	NA	5' UTR (NM_001199573, exon 1 of 8)	5' UTR (NM_001199573, exon 1 of 8)	175	NM_006074	10346	Hs.501778	NM_006074	HPRD:05951	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
19-PTNLD28-TUMOR_peak_65981	chr22	46512342	46512614	+	10.88934	NA	Intergenic	Intergenic	2912	NR_029479	406884		NR_029479	miRBase:MI0000063	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
19-PTNLD28-TUMOR_peak_47357	chr19	11803143	11803403	+	10.88596	NA	Intergenic	PABL_A|LTR|ERV1	18460	NR_028594	401898	Hs.672384	NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15092	chr10	99096740	99096882	+	10.88591	NA	Intergenic	Intergenic	-2353	NM_012083	23401	Hs.140720	NM_012083	HPRD:05419	FRAT2	-	frequently rearranged in advanced T-cell lymphomas 2	protein-coding
19-PTNLD28-TUMOR_peak_3053	chr1	44400592	44400720	+	10.88430	NA	intron (NM_057090, intron 2 of 4)	intron (NM_057090, intron 2 of 4)	1664	NM_057090	9048	Hs.632404	NM_003976	HPRD:04863	ARTN	ENOVIN|EVN|NBN	artemin	protein-coding
19-PTNLD28-TUMOR_peak_96332	chr7	150755787	150755980	+	10.88430	NA	promoter-TSS (NM_001164410)	promoter-TSS (NM_001164410)	584	NM_001199692	6522	Hs.647069	NM_003040	HPRD:02728	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3	solute carrier family 4 (anion exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_83390	chr5	154027005	154027131	+	10.88348	NA	Intergenic	CpG	-51436	NR_036094	100422950		NR_036094	miRBase:MI0014165	MIR3141	-	microRNA 3141	ncRNA
19-PTNLD28-TUMOR_peak_60789	chr20	35075637	35075767	+	10.88348	NA	intron (NM_014902, intron 7 of 12)	intron (NM_014902, intron 7 of 12)	-14116	NM_001042486	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_92967	chr7	66527966	66528094	+	10.88348	NA	intron (NM_018264, intron 9 of 15)	L1MD|LINE|L1	51354	NR_039794	100616331		NR_039794	miRBase:MI0017278	MIR4650-2	-	microRNA 4650-2	ncRNA
19-PTNLD28-TUMOR_peak_19196	chr11	64655481	64655667	+	10.88348	NA	Intergenic	Intergenic	3144	NR_029578	406967		NR_029578	miRBase:MI0000234	MIR192	MIRN192|miR-192|miRNA192	microRNA 192	ncRNA
19-PTNLD28-TUMOR_peak_63455	chr21	38630273	38630571	+	10.88348	NA	intron (NM_006052, intron 1 of 7)	CpG	9411	NM_006052	10311	Hs.369488	NM_006052	HPRD:10390	DSCR3	DCRA|DSCRA	Down syndrome critical region gene 3	protein-coding
19-PTNLD28-TUMOR_peak_81527	chr5	111078409	111078696	+	10.88348	NA	intron (NM_001142474, intron 2 of 3)	intron (NM_001142474, intron 2 of 3)	13396	NM_001142483	9315	Hs.36053	NM_004772	HPRD:09545	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
19-PTNLD28-TUMOR_peak_37835	chr16	53117119	53117285	+	10.88348	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	28257	NM_025134	80205	Hs.59159	NM_025134	HPRD:08570	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_63765	chr21	43884090	43884289	+	10.88348	NA	Intergenic	MER57B1|LTR|ERV1	32275	NM_001286506	89765	Hs.661069	NM_080860	HPRD:11651	RSPH1	CILD24|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding
19-PTNLD28-TUMOR_peak_26687	chr12	121037076	121037208	+	10.88348	NA	Intergenic	MIRc|SINE|MIR	-17941	NM_198202	51367	Hs.279913	NM_015918	HPRD:15158	POP5	HSPC004|RPP2|RPP20|hPop5	processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_46942	chr19	6869317	6869427	+	10.88348	NA	Intergenic	LTR13A|LTR|ERVK	-18188	NM_001256254	2015	Hs.2375	NM_001974	HPRD:02733	EMR1	TM7LN3	egf-like module containing, mucin-like, hormone receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_80808	chr5	76279354	76279572	+	10.88348	NA	Intergenic	Intergenic	30783	NM_001882	1393	Hs.115617	NM_001882	HPRD:08348	CRHBP	CRF-BP|CRFBP	corticotropin releasing hormone binding protein	protein-coding
19-PTNLD28-TUMOR_peak_68212	chr3	50348200	50348302	+	10.88348	NA	intron (NM_153281, intron 1 of 5)	SVA_D|Other|Other	1561	NM_153281	3373	Hs.75619	NM_033159	HPRD:06146	HYAL1	HYAL-1|LUCA1|NAT6	hyaluronoglucosaminidase 1	protein-coding
19-PTNLD28-TUMOR_peak_71351	chr3	141205501	141205727	+	10.88245	NA	promoter-TSS (NM_006506)	promoter-TSS (NM_006506)	-312	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_9807	chr1	207206046	207206248	+	10.88160	NA	promoter-TSS (NM_001083924)	promoter-TSS (NM_001083924)	-46	NM_001083924	79098	Hs.32417	NM_023938	HPRD:15294	C1orf116	SARG	chromosome 1 open reading frame 116	protein-coding
19-PTNLD28-TUMOR_peak_48407	chr19	30019308	30019507	+	10.88160	NA	intron (NM_001146339, intron 3 of 4)	CpG-13415	1916	NM_001146339	342865	Hs.451618	NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_4400	chr1	76620410	76620591	+	10.88160	NA	intron (NM_152996, intron 1 of 4)	intron (NM_152996, intron 1 of 4)	80111	NM_001160011	256435	Hs.337040	NM_152996		ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_31457	chr14	78105175	78105509	+	10.88160	NA	Intergenic	Intergenic	-22232	NM_004863	9517	Hs.435661	NM_004863	HPRD:05755	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase, long chain base subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_43542	chr17	74299304	74299490	+	10.88160	NA	intron (NM_032134, intron 3 of 18)	intron (NM_032134, intron 3 of 18)	4364	NM_032134	84074	Hs.252739	NM_032134	HPRD:10891	QRICH2	-	glutamine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_16870	chr11	6440068	6440800	+	10.88160	NA	promoter-TSS (NM_001164)	promoter-TSS (NM_001164)	-93	NR_047512	322	Hs.372840	NM_001164	HPRD:04087	APBB1	FE65|MGC:9072|RIR	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)	protein-coding
19-PTNLD28-TUMOR_peak_104471	chr9	92130454	92130552	+	10.88160	NA	Intergenic	Intergenic	-35892	NM_001142287	10507	Hs.494406	NM_006378	HPRD:03520	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding
19-PTNLD28-TUMOR_peak_39425	chr16	89189878	89190280	+	10.88160	NA	intron (NR_104293, intron 7 of 10)	intron (NR_104293, intron 7 of 10)	-12877	NR_045667	197322	Hs.461727	NM_174917	HPRD:14117	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_105698	chr9	119150714	119150852	+	10.88160	NA	intron (NM_002581, intron 21 of 21)	intron (NM_002581, intron 21 of 21)	12102	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93179	chr7	72980416	72980556	+	10.88160	NA	Intergenic	Intergenic	-8421	NM_001301061	9275	Hs.647051	NM_001707	HPRD:05786	BCL7B	-	B-cell CLL/lymphoma 7B	protein-coding
19-PTNLD28-TUMOR_peak_72607	chr3	180320261	180320455	+	10.88160	NA	intron (NM_133462, intron 1 of 11)	CpG	440	NM_001288582	151613	Hs.43213	NM_133462	HPRD:15579	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
19-PTNLD28-TUMOR_peak_29432	chr14	22882262	22882373	+	10.88160	NA	Intergenic	Intergenic	175826	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_23360	chr12	21572528	21572640	+	10.88160	NA	Intergenic	L1PA2|LINE|L1	-17954	NM_024854	79912	Hs.709545	NM_024854		PYROXD1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
19-PTNLD28-TUMOR_peak_84352	chr5	177236233	177236343	+	10.87549	NA	Intergenic	Intergenic	-28783	NM_173663	285596	Hs.368516	NM_173663	HPRD:14870	FAM153A	NY-REN-7	family with sequence similarity 153, member A	protein-coding
19-PTNLD28-TUMOR_peak_89236	chr6	117002651	117002944	+	10.87549	NA	intron (NM_002269, intron 1 of 14)	CpG	430	NM_002269	3841	Hs.182971	NM_002269	HPRD:05179	KPNA5	IPOA6|SRP6	karyopherin alpha 5 (importin alpha 6)	protein-coding
19-PTNLD28-TUMOR_peak_104148	chr9	85642172	85642318	+	10.87549	NA	intron (NM_152573, intron 1 of 16)	MER21C|LTR|ERVL	35798	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_40497	chr17	18933129	18933395	+	10.87344	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	17074	NM_006613	10750	Hs.567416	NM_006613		GRAP	-	GRB2-related adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_71187	chr3	138567589	138567867	+	10.87344	NA	Intergenic	AluJo|SINE|Alu	-89527	NM_006219	5291	Hs.239818	NM_006219		PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_9649	chr1	205511572	205511765	+	10.87290	NA	Intergenic	Intergenic	14095	NR_027086	284578	Hs.537020	NR_027086		LOC284578	-	uncharacterized LOC284578	ncRNA
19-PTNLD28-TUMOR_peak_103575	chr9	69652255	69652355	+	10.87290	NA	intron (NR_024443, intron 1 of 3)	intron (NR_024443, intron 1 of 3)	944	NR_024443	100133920	Hs.645503	NR_024443		LOC100133920	-	uncharacterized LOC100133920	ncRNA
19-PTNLD28-TUMOR_peak_46195	chr18	67618478	67618748	+	10.87204	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	5619	NM_006566	10666	Hs.660130	NM_006566	HPRD:09252	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
19-PTNLD28-TUMOR_peak_68752	chr3	63964809	63965039	+	10.87204	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	11504	NM_001128149	6314	Hs.476595	NM_000333	HPRD:06365	ATXN7	ADCAII|OPCA3|SCA7	ataxin 7	protein-coding
19-PTNLD28-TUMOR_peak_92540	chr7	50732348	50732495	+	10.87204	NA	intron (NM_001001550, intron 4 of 15)	intron (NM_001001550, intron 4 of 15)	40577	NM_001001550	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_78895	chr5	10499969	10500112	+	10.87204	NA	intron (NR_104606, intron 1 of 2)	AluJb|SINE|Alu	2800	NR_104606	101929412	Hs.508287	NR_104606	ENSG00000249396	LOC101929412	-	uncharacterized LOC101929412	ncRNA
19-PTNLD28-TUMOR_peak_96775	chr7	158636579	158636821	+	10.87204	NA	Intergenic	MER4C|LTR|ERV1	-12569	NM_018051	55112	Hs.389945	NM_018051	HPRD:08545	WDR60	FAP163|SRPS6|SRTD8	WD repeat domain 60	protein-coding
19-PTNLD28-TUMOR_peak_727	chr1	10927233	10927388	+	10.87204	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-70577	NM_017766	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_38066	chr16	57683095	57683234	+	10.87204	NA	intron (NM_001290142, intron 2 of 13)	intron (NM_001290142, intron 2 of 13)	9957	NM_001290144	9289	Hs.513633	NM_005682	HPRD:06824	GPR56	BFPP|BPPR|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
19-PTNLD28-TUMOR_peak_14610	chr10	82049628	82049895	+	10.87204	NA	promoter-TSS (NM_000429)	promoter-TSS (NM_000429)	-327	NM_000429	4143	Hs.282670	NM_000429	HPRD:02013	MAT1A	MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_15584	chr10	111928376	111928538	+	10.87204	NA	Intergenic	Intergenic	-38906	NM_130439	4601	Hs.602078	NM_005962	HPRD:02486	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
19-PTNLD28-TUMOR_peak_54497	chr2	101358932	101359095	+	10.87204	NA	Intergenic	Intergenic	-77600	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_81373	chr5	102054686	102054861	+	10.87204	NA	Intergenic	Intergenic	-47605	NR_103753	285708	Hs.533011	NR_103753		LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA
19-PTNLD28-TUMOR_peak_17028	chr11	9159391	9159551	+	10.87204	NA	TTS (NM_001243254)	TTS (NM_001243254)	43561	NR_027713	283102	Hs.689472	NR_027713	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
19-PTNLD28-TUMOR_peak_99304	chr8	81202268	81202462	+	10.87204	NA	Intergenic	Intergenic	48741	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_1173	chr1	17896148	17896402	+	10.87204	NA	intron (NM_018125, intron 1 of 28)	intron (NM_018125, intron 1 of 28)	-10773	NM_001011722	55160	Hs.443460	NM_018125	HPRD:07679	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
19-PTNLD28-TUMOR_peak_9951	chr1	212085312	212085729	+	10.87204	NA	Intergenic	Intergenic	-81406	NM_014873	9926	Hs.744851	NM_014873	HPRD:14304	LPGAT1	FAM34A|FAM34A1|NET8	lysophosphatidylglycerol acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_105955	chr9	125152570	125152714	+	10.87204	NA	intron (NM_080591, intron 10 of 10)	intron (NM_080591, intron 10 of 10)	15041	NM_001271165	5742	Hs.201978	NM_000962	HPRD:07518	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
19-PTNLD28-TUMOR_peak_91563	chr7	22470265	22470363	+	10.87204	NA	intron (NM_207342, intron 4 of 4)	intron (NM_207342, intron 4 of 4)	69587	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_46843	chr19	5166305	5166476	+	10.87204	NA	Intergenic	L1MB5|LINE|L1	174424	NM_002850	5802	Hs.744928	NM_002850	HPRD:03344	PTPRS	PTPSIGMA	protein tyrosine phosphatase, receptor type, S	protein-coding
19-PTNLD28-TUMOR_peak_43995	chr17	79626730	79626945	+	10.87204	NA	Intergenic	AluSp|SINE|Alu	-3230	NM_002602	5148	Hs.654482	NM_002602	HPRD:08914	PDE6G	PDEG|RP57	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding
19-PTNLD28-TUMOR_peak_86198	chr6	27059517	27059813	+	10.87204	NA	Intergenic	Intergenic	40910	NM_021058	8970	Hs.591807	NM_021058		HIST1H2BJ	H2B/r|H2BFR|H2BJ	histone cluster 1, H2bj	protein-coding
19-PTNLD28-TUMOR_peak_77250	chr4	141058844	141059087	+	10.87204	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	16268	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_7466	chr1	158125581	158125713	+	10.87204	NA	Intergenic	Intergenic	-15217	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_74293	chr4	7971521	7971687	+	10.86983	NA	intron (NM_001130085, intron 17 of 17)	intron (NM_001130085, intron 17 of 17)	-29951	NM_001134647	60312	Hs.529369	NM_021638	HPRD:09747	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_70993	chr3	134094047	134094351	+	10.86725	NA	promoter-TSS (NM_001278685)	promoter-TSS (NM_001278685)	60	NM_001278683	51421	Hs.426312	NM_016201	HPRD:16485	AMOTL2	LCCP	angiomotin like 2	protein-coding
19-PTNLD28-TUMOR_peak_8571	chr1	180546621	180546768	+	10.86722	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	18584	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_76154	chr4	87843663	87843833	+	10.86722	NA	Intergenic	LTR41|LTR|ERVL	12254	NR_038841	100506746	Hs.657766	NR_038841	ENSG00000163633	LOC100506746	-	uncharacterized LOC100506746	ncRNA
19-PTNLD28-TUMOR_peak_43404	chr17	73252155	73252541	+	10.86722	NA	intron (NM_001291641, intron 1 of 17)	HERVH-int|LTR|ERV1	5394	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_95560	chr7	135291563	135291689	+	10.86722	NA	exon (NM_015135, exon 21 of 43)	exon (NM_015135, exon 21 of 43)	48964	NM_015135	23165	Hs.743250	NM_015135	HPRD:17653	NUP205	C7orf14	nucleoporin 205kDa	protein-coding
19-PTNLD28-TUMOR_peak_7323	chr1	156547413	156547584	+	10.86722	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-2021	NM_001105669	164118	Hs.447851	NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
19-PTNLD28-TUMOR_peak_97711	chr8	23755472	23755597	+	10.86722	NA	Intergenic	Intergenic	-43214	NM_003155	6781	Hs.25590	NM_003155	HPRD:03115	STC1	STC	stanniocalcin 1	protein-coding
19-PTNLD28-TUMOR_peak_26521	chr12	117599515	117599894	+	10.86722	NA	intron (NM_033624, intron 9 of 11)	intron (NM_033624, intron 9 of 11)	28596	NM_033624	23014	Hs.740376	NM_015002	HPRD:09948	FBXO21	FBX21	F-box protein 21	protein-coding
19-PTNLD28-TUMOR_peak_14963	chr10	95230933	95231087	+	10.86722	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	11064	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_56661	chr2	162095184	162095428	+	10.86708	NA	intron (NR_110593, intron 3 of 3)	CpG	-5944	NR_110163	100996579	Hs.660929	NR_110163		LOC100996579	-	uncharacterized LOC100996579	ncRNA
19-PTNLD28-TUMOR_peak_32725	chr15	28754535	28754637	+	10.86708	NA	Intergenic	AluY|SINE|Alu	-18595	NR_039732	100616223		NR_039732	miRBase:MI0016873	MIR4509-1	-	microRNA 4509-1	ncRNA
19-PTNLD28-TUMOR_peak_94268	chr7	99730385	99730497	+	10.86708	NA	Intergenic	Intergenic	6121	NM_203397	255374	Hs.632319	NM_203397	HPRD:18584	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32141	chr14	102976044	102976262	+	10.86708	NA	promoter-TSS (NM_152326)	promoter-TSS (NM_152326)	-25	NM_152326	122416	Hs.432945	NM_152326	HPRD:12467	ANKRD9	-	ankyrin repeat domain 9	protein-coding
19-PTNLD28-TUMOR_peak_104818	chr9	99381015	99381191	+	10.86708	NA	intron (NM_003671, intron 1 of 12)	CpG	1009	NM_003671	8555	Hs.40582	NM_003671	HPRD:04615	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
19-PTNLD28-TUMOR_peak_35581	chr16	115693	115926	+	10.86708	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	6820	NM_022450	64285	Hs.744992	NM_022450	HPRD:07027	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_110394	chrY	59363243	59363344	+	10.86457	NA	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	-2439	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16	pseudo
19-PTNLD28-TUMOR_peak_110065	chrX	155260237	155260338	+	10.86457	NA	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	-2439	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16	pseudo
19-PTNLD28-TUMOR_peak_69868	chr3	112981009	112981177	+	10.86457	NA	intron (NM_033254, intron 4 of 19)	intron (NM_033254, intron 4 of 19)	49718	NM_033254	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_39370	chr16	88700518	88700777	+	10.86417	NA	Intergenic	CpG	-4354	NM_013278	27189	Hs.278911	NM_013278	HPRD:06863	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
19-PTNLD28-TUMOR_peak_61590	chr20	46927674	46928073	+	10.86191	NA	Intergenic	Intergenic	-60781	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_5729	chr1	115876094	115876207	+	10.86191	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	4707	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_97957	chr8	29208001	29208266	+	10.86191	NA	5' UTR (NM_001394, exon 1 of 4)	5' UTR (NM_001394, exon 1 of 4)	134	NM_001394	1846	Hs.417962	NM_001394	HPRD:04123	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
19-PTNLD28-TUMOR_peak_36739	chr16	21530562	21530859	+	10.85615	NA	non-coding (NR_002594, exon 1 of 1)	non-coding (NR_002594, exon 1 of 1)	1055	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_9192	chr1	201248568	201248685	+	10.85314	NA	Intergenic	Intergenic	-3954	NM_001005337	5317	Hs.497350	NM_000299	HPRD:03579	PKP1	B6P	plakophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_18701	chr11	58345053	58345236	+	10.84584	NA	intron (NM_001143995, intron 1 of 8)	intron (NM_001143995, intron 1 of 8)	495	NM_001143995	9404	Hs.125474	NM_004811	HPRD:05651	LPXN	LDPL	leupaxin	protein-coding
19-PTNLD28-TUMOR_peak_110118	chrY	2559097	2559564	+	10.84544	NA	5' UTR (NM_001122898, exon 1 of 9).2	5' UTR (NM_001122898, exon 1 of 9).2	102	NM_001122898	4267	Hs.653349	NM_002414	HPRD:02434	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
19-PTNLD28-TUMOR_peak_84109	chr5	173382032	173382176	+	10.84544	NA	intron (NM_030627, intron 9 of 9)	intron (NM_030627, intron 9 of 9)	-34058	NM_001144954	133491	Hs.131469	NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_20652	chr11	94666443	94666549	+	10.84544	NA	Intergenic	Intergenic	40280	NM_016403	51503	Hs.503597	NM_016403	HPRD:13703	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_42044	chr17	46507407	46507648	+	10.84544	NA	promoter-TSS (NM_001075099)	promoter-TSS (NM_001075099)	67	NM_001075099	8631	Hs.316931	NM_003726	HPRD:05396	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_46822	chr19	4851520	4851835	+	10.84544	NA	intron (NM_005817, intron 5 of 7)	L2|LINE|L2	16103	NM_001164194	10226	Hs.140452	NM_005817	HPRD:04080	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
19-PTNLD28-TUMOR_peak_4367	chr1	74993342	74993687	+	10.84544	NA	intron (NM_001112808, intron 25 of 26)	intron (NM_001112808, intron 25 of 26)	-49600	NR_121671	101927320	Hs.662589	NR_121670		ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46518	chr19	850858	851004	+	10.84544	NA	Intergenic	L3|LINE|CR1	-1360	NM_001972	1991	Hs.99863	NM_001972	HPRD:00554	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
19-PTNLD28-TUMOR_peak_71015	chr3	134491541	134491668	+	10.84544	NA	Intergenic	Intergenic	-22495	NM_004441	2047	Hs.116092	NM_004441	HPRD:02790	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
19-PTNLD28-TUMOR_peak_37844	chr16	53453111	53453257	+	10.84544	NA	Intergenic	MER41B|LTR|ERV1	-15167	NM_005611	5934	Hs.513609	NM_005611	HPRD:01576	RBL2	P130|Rb2	retinoblastoma-like 2	protein-coding
19-PTNLD28-TUMOR_peak_15737	chr10	115614555	115614774	+	10.84544	NA	promoter-TSS (NM_014881)	promoter-TSS (NM_014881)	273	NM_198514	374354	Hs.369924	NM_198514		NHLRC2	-	NHL repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_67040	chr3	18758351	18758631	+	10.84544	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	271762	NR_125803	101927777	Hs.543235	NR_125803		SATB1-AS1	-	SATB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64258	chr22	18471062	18471281	+	10.84544	NA	intron (NM_015241, intron 1 of 31)	MER58B|DNA|hAT-Charlie	-7444	NR_030378	693233		NR_030378	miRBase:MI0003663	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
19-PTNLD28-TUMOR_peak_77853	chr4	159835468	159835610	+	10.84544	NA	intron (NM_152543, intron 4 of 4)	intron (NM_152543, intron 4 of 4)	120794	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_94752	chr7	106587799	106587959	+	10.84544	NA	Intergenic	Intergenic	81955	NM_002649	5294	Hs.32942	NM_002649	HPRD:03135	PIK3CG	PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma	protein-coding
19-PTNLD28-TUMOR_peak_109037	chrX	103381217	103381393	+	10.84544	NA	intron (NM_001012755, intron 1 of 1)	intron (NM_001012755, intron 1 of 1)	-11988	NR_039980	286437	Hs.656786	NR_039980		LOC286437	-	uncharacterized LOC286437	ncRNA
19-PTNLD28-TUMOR_peak_108547	chrX	63522273	63522402	+	10.84544	NA	intron (NM_017677, intron 12 of 13)	L1PA2|LINE|L1	-71826	NM_130388	142689	Hs.56281	NM_130388	HPRD:06451	ASB12	-	ankyrin repeat and SOCS box containing 12	protein-coding
19-PTNLD28-TUMOR_peak_9251	chr1	201655998	201656158	+	10.84544	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	-32558	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
19-PTNLD28-TUMOR_peak_37760	chr16	50464054	50464258	+	10.84544	NA	Intergenic	Intergenic	-61311	NM_001173984	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_107382	chrX	2609097	2609564	+	10.84544	NA	5' UTR (NM_002414, exon 1 of 10)	5' UTR (NM_002414, exon 1 of 10)	102	NM_001122898	4267	Hs.653349	NM_002414	HPRD:02434	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule	protein-coding
19-PTNLD28-TUMOR_peak_55348	chr2	121176665	121176838	+	10.84544	NA	Intergenic	Intergenic	47174	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_11954	chr10	8626795	8627065	+	10.84544	NA	Intergenic	Intergenic	-316662	NR_108058	100507143	Hs.258979	NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
19-PTNLD28-TUMOR_peak_65891	chr22	45149697	45149795	+	10.84346	NA	intron (NM_001017526, intron 1 of 12)	intron (NM_001017526, intron 1 of 12)	1308	NM_001017526	23779	Hs.102336	NM_181335	HPRD:06448	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
19-PTNLD28-TUMOR_peak_3673	chr1	55273113	55273270	+	10.84346	NA	intron (NM_001110533, intron 2 of 9)	intron (NM_001110533, intron 2 of 9)	1455	NM_152607	163747	Hs.376018	NM_152607	HPRD:08807	C1orf177	-	chromosome 1 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_74159	chr4	6329103	6329226	+	10.84346	NA	intron (NM_020416, intron 8 of 8)	intron (NM_020416, intron 8 of 8)	54433	NM_181876	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_62352	chr20	56964515	56964714	+	10.84346	NA	intron (NR_036633, intron 1 of 3)	CpG	439	NR_036633	9217	Hs.182625	NM_004738	HPRD:09300	VAPB	ALS8|VAMP-B|VAP-B	VAMP (vesicle-associated membrane protein)-associated protein B and C	protein-coding
19-PTNLD28-TUMOR_peak_4896	chr1	93427944	93428266	+	10.84259	NA	Intergenic	Intergenic	-1026	NM_001252270	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_41349	chr17	38267455	38267777	+	10.84259	NA	Intergenic	Intergenic	-10638	NM_021724	9572	Hs.724	NM_021724	HPRD:03873	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1, group D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_39475	chr16	89665933	89666043	+	10.84054	NA	Intergenic	Intergenic	-13728	NM_001128141	1800	Hs.109	NM_004413	HPRD:01563	DPEP1	MBD1|MDP|RDP	dipeptidase 1 (renal)	protein-coding
19-PTNLD28-TUMOR_peak_70697	chr3	129035299	129035768	+	10.84054	NA	promoter-TSS (NM_006026)	promoter-TSS (NM_006026)	-413	NM_006026	8971	Hs.75307	NM_006026	HPRD:04151	H1FX	H1X	H1 histone family, member X	protein-coding
19-PTNLD28-TUMOR_peak_41181	chr17	35853361	35853863	+	10.84054	NA	intron (NM_007026, intron 1 of 2)	intron (NM_007026, intron 1 of 2)	3661	NM_007026	11072	Hs.91448	NM_007026	HPRD:09427	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
19-PTNLD28-TUMOR_peak_46483	chr19	382497	382831	+	10.84030	NA	Intergenic	Intergenic	-6651	NM_199202	51298	Hs.250002	NM_016585	HPRD:15503	THEG	CT56|THEG1	theg spermatid protein	protein-coding
19-PTNLD28-TUMOR_peak_40940	chr17	29885873	29886250	+	10.84030	NA	promoter-TSS (NR_029710)	promoter-TSS (NR_029710)	-954	NR_029710	406968		NR_029710	miRBase:MI0000487	MIR193A	MIRN193|MIRN193A	microRNA 193a	ncRNA
19-PTNLD28-TUMOR_peak_36612	chr16	19148010	19148139	+	10.83890	NA	Intergenic	Intergenic	22820	NR_028028	162073	Hs.530899	NM_001034841	HPRD:18743	ITPRIPL2	-	inositol 1,4,5-trisphosphate receptor interacting protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_13748	chr10	60937268	60937468	+	10.83890	NA	exon (NM_001143774, exon 1 of 5)	exon (NM_001143774, exon 1 of 5)	141	NM_001143774	84457	Hs.499704	NM_032439	HPRD:15131	PHYHIPL	-	phytanoyl-CoA 2-hydroxylase interacting protein-like	protein-coding
19-PTNLD28-TUMOR_peak_92887	chr7	65033236	65033416	+	10.83890	NA	intron (NR_038378, intron 8 of 9)	intron (NR_038378, intron 8 of 9)	-79441	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
19-PTNLD28-TUMOR_peak_80753	chr5	74938172	74938629	+	10.83890	NA	intron (NM_001276713, intron 7 of 13)	L1PA2|LINE|L1	31099	NM_001276713	728780	Hs.370455	NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_64021	chr21	46532456	46532599	+	10.83890	NA	intron (NR_027673, intron 1 of 12)	intron (NR_027673, intron 1 of 12)	38034	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_81271	chr5	96379843	96380004	+	10.83890	NA	Intergenic	Intergenic	85767	NM_175920	4012	Hs.527199	NM_005575	HPRD:01041	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl/cystinyl aminopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_19627	chr11	68856226	68856384	+	10.83890	NA	3' UTR (NM_139075, exon 25 of 25)	3' UTR (NM_139075, exon 25 of 25)	39955	NM_139075	219931	Hs.131851	NM_139075		TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
19-PTNLD28-TUMOR_peak_79501	chr5	36442560	36442788	+	10.83890	NA	Intergenic	MER61E|LTR|ERV1	-140663	NM_145000	202151	Hs.729817	NM_145000	HPRD:08064	RANBP3L	-	RAN binding protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_73659	chr3	197243494	197243662	+	10.83890	NA	intron (NM_004051, intron 5 of 6)	intron (NM_004051, intron 5 of 6)	39280	NM_203314	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_68188	chr3	50201624	50201821	+	10.83731	NA	intron (NM_004186, intron 2 of 18)	intron (NM_004186, intron 2 of 18)	8874	NM_004186	6405	Hs.32981	NM_004186	HPRD:03079	SEMA3F	SEMA-IV|SEMA4|SEMAK	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding
19-PTNLD28-TUMOR_peak_84321	chr5	176923198	176923341	+	10.83682	NA	intron (NR_103804, intron 2 of 12)	intron (NR_103804, intron 2 of 12)	1337	NM_203352	9260	Hs.533040	NM_005451	HPRD:10436	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7 (enigma)	protein-coding
19-PTNLD28-TUMOR_peak_106240	chr9	130879986	130880097	+	10.83596	NA	non-coding (NR_033374, exon 2 of 5)	non-coding (NR_033374, exon 2 of 5)	972	NR_033374	100289019	Hs.693796	NR_033374	ENSG00000234771	SLC25A25-AS1	-	SLC25A25 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109296	chrX	118708673	118708855	+	10.83596	NA	intron (NM_001282161, intron 1 of 5)	CpG	334	NM_003336	7319	Hs.379466	NM_003336	HPRD:02422	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin-conjugating enzyme E2A	protein-coding
19-PTNLD28-TUMOR_peak_24475	chr12	53738857	53739231	+	10.83596	NA	promoter-TSS (NM_001300837)	promoter-TSS (NM_001300837)	-467	NM_001300837	121340	Hs.209402	NM_152860	HPRD:05971	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_30650	chr14	61788175	61788567	+	10.83596	NA	5' UTR (NM_006255, exon 1 of 14)	5' UTR (NM_006255, exon 1 of 14)	210	NM_006255	5583	Hs.333907	NM_006255	HPRD:05669	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C, eta	protein-coding
19-PTNLD28-TUMOR_peak_1411	chr1	22919750	22919964	+	10.83596	NA	exon (NM_020526, exon 6 of 17)	exon (NM_020526, exon 6 of 17)	29853	NM_001006943	2046	Hs.283613	NM_020526	HPRD:01493	EPHA8	EEK|EK3|HEK3	EPH receptor A8	protein-coding
19-PTNLD28-TUMOR_peak_99613	chr8	97940803	97941024	+	10.83596	NA	intron (NM_016134, intron 4 of 7)	intron (NM_016134, intron 4 of 7)	283458	NM_016134	10404	Hs.156178	NM_016134	HPRD:07140	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
19-PTNLD28-TUMOR_peak_45708	chr18	47652921	47653079	+	10.83596	NA	promoter-TSS (NR_036204)	promoter-TSS (NR_036204)	-67	NR_036204	100422865		NR_036204		MIR4320	-	microRNA 4320	ncRNA
19-PTNLD28-TUMOR_peak_95630	chr7	137084983	137085099	+	10.83596	NA	intron (NM_004717, intron 31 of 33)	intron (NM_004717, intron 31 of 33)	-56495	NM_002825	5764	Hs.371249	NM_002825	HPRD:01199	PTN	HARP|HBGF8|HBNF|NEGF1	pleiotrophin	protein-coding
19-PTNLD28-TUMOR_peak_61705	chr20	48237092	48237281	+	10.83596	NA	Intergenic	Intergenic	-52479	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_16659	chr11	2442002	2442231	+	10.83596	NA	intron (NM_014555, intron 3 of 23)	CpG	2159	NM_014555	29850	Hs.272287	NM_014555	HPRD:16064	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel, subfamily M, member 5	protein-coding
19-PTNLD28-TUMOR_peak_104339	chr9	89827537	89827708	+	10.83596	NA	Intergenic	Intergenic	64063	NM_001001709	401535	Hs.657740	NM_001001709	HPRD:16988	C9orf170	-	chromosome 9 open reading frame 170	protein-coding
19-PTNLD28-TUMOR_peak_58941	chr2	235007364	235007697	+	10.83596	NA	Intergenic	Intergenic	48184	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_17521	chr11	18785522	18785685	+	10.83596	NA	intron (NM_001278236, intron 3 of 14)	L3|LINE|CR1	27786	NM_001278238	84867	Hs.79092	NM_006906	HPRD:01472	PTPN5	PTPSTEP|STEP	protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)	protein-coding
19-PTNLD28-TUMOR_peak_49675	chr19	48770400	48770496	+	10.83506	NA	Intergenic	Intergenic	-2908	NM_153608	163071	Hs.511883	NM_153608	HPRD:14463	ZNF114	-	zinc finger protein 114	protein-coding
19-PTNLD28-TUMOR_peak_23016	chr12	10517134	10517359	+	10.83506	NA	intron (NR_120430, intron 1 of 3)	HERV15-int|LTR|ERV1	878	NR_120430	101928100	Hs.638425	NR_120430	ENSG00000245648	LOC101928100	-	uncharacterized LOC101928100	ncRNA
19-PTNLD28-TUMOR_peak_38647	chr16	72127904	72128056	+	10.83435	NA	promoter-TSS (NM_001142317)	promoter-TSS (NM_001142317)	-212	NM_001142317	54957	Hs.134406	NM_017853	HPRD:11655	TXNL4B	DLP|Dim2	thioredoxin-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_91217	chr7	6966352	6966457	+	10.83432	NA	Intergenic	Intergenic	-100478	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_87153	chr6	36967092	36967281	+	10.83432	NA	Intergenic	Intergenic	-6237	NM_173558	221472	Hs.509664	NM_173558	HPRD:05478	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_52997	chr2	62515132	62515316	+	10.82861	NA	Intergenic	Intergenic	82263	NR_049824	100847087		NR_049824	miRBase:MI0018171	MIR5192	-	microRNA 5192	ncRNA
19-PTNLD28-TUMOR_peak_3597	chr1	54302722	54302858	+	10.82861	NA	intron (NM_001168551, intron 1 of 17)	L1MB5|LINE|L1	1435	NM_018087	55706	Hs.476525	NM_018087	HPRD:08547	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
19-PTNLD28-TUMOR_peak_49807	chr19	49623323	49623491	+	10.82861	NA	intron (NM_003660, intron 1 of 29)	CpG	761	NR_103842	8541	Hs.413748	NM_003660	HPRD:04393	PPFIA3	LPNA3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_30920	chr14	68639529	68639667	+	10.82861	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	353102	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_98001	chr8	29877254	29877418	+	10.82861	NA	Intergenic	Intergenic	-62472	NR_036104	100422876		NR_036104	miRBase:MI0014175	MIR3148	-	microRNA 3148	ncRNA
19-PTNLD28-TUMOR_peak_108410	chrX	54384928	54385587	+	10.82861	NA	promoter-TSS (NM_020922)	promoter-TSS (NM_020922)	-819	NM_020922	65267	Hs.92423	NM_020922	HPRD:02289	WNK3	PRKWNK3	WNK lysine deficient protein kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_19537	chr11	67616005	67616362	+	10.82861	NA	Intergenic	HERVE-int|LTR|ERV1	-43376	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_55126	chr2	114361730	114361896	+	10.82514	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	-519	NR_024004	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
19-PTNLD28-TUMOR_peak_84315	chr5	176883455	176883602	+	10.82169	NA	TTS (NM_001174102)	TTS (NM_001174102)	8202	NM_001174102	80758	Hs.534492	NM_030567	HPRD:15186	PRR7	-	proline rich 7 (synaptic)	protein-coding
19-PTNLD28-TUMOR_peak_88271	chr6	72542148	72542411	+	10.81825	NA	Intergenic	L1PA3|LINE|L1	-54127	NM_014989	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_55255	chr2	119658810	119658916	+	10.81825	NA	Intergenic	L1PA2|LINE|L1	-40882	NM_006770	8685	Hs.67726	NM_006770	HPRD:05337	MARCO	SCARA2	macrophage receptor with collagenous structure	protein-coding
19-PTNLD28-TUMOR_peak_88413	chr6	77200093	77200332	+	10.81825	NA	Intergenic	HERVK11-int|LTR|ERVK	-417817	NM_001282368	3617	Hs.590893	NM_001563	HPRD:04186	IMPG1	GP147|IPM150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding
19-PTNLD28-TUMOR_peak_21513	chr11	118505524	118505735	+	10.81825	NA	intron (NM_001144759, intron 9 of 20)	CpG	-9089	NR_106773	102466719		NR_106773		MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
19-PTNLD28-TUMOR_peak_45264	chr18	34818715	34819101	+	10.81825	NA	Intergenic	Intergenic	327092	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_53179	chr2	66248492	66248646	+	10.81825	NA	Intergenic	Intergenic	336891	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_9964	chr1	212356026	212356255	+	10.81825	NA	Intergenic	Intergenic	-102739	NM_006243	5525	Hs.744012	NM_006243	HPRD:03384	PPP2R5A	B56A|PR61A	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
19-PTNLD28-TUMOR_peak_90386	chr6	161110197	161110391	+	10.81825	NA	Intergenic	AluY|SINE|Alu	-12931	NM_000301	5340	Hs.143436	NM_000301	HPRD:01417	PLG	-	plasminogen	protein-coding
19-PTNLD28-TUMOR_peak_88769	chr6	91062572	91062696	+	10.81825	NA	Intergenic	AluJb|SINE|Alu	40173	NR_039671	100616109		NR_039671	miRBase:MI0016812	MIR4464	-	microRNA 4464	ncRNA
19-PTNLD28-TUMOR_peak_90251	chr6	158262620	158262794	+	10.81825	NA	intron (NM_016224, intron 1 of 17)	MER54A|LTR|ERVL	18504	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_71044	chr3	135590236	135590448	+	10.81825	NA	Intergenic	Intergenic	-94173	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_82134	chr5	132082652	132083143	+	10.81825	NA	promoter-TSS (NM_001287253)	promoter-TSS (NM_001287253)	-240	NM_001287253	645121	Hs.522057	NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_105610	chr9	117381809	117382021	+	10.81825	NA	intron (NM_153045, intron 2 of 8)	intron (NM_153045, intron 2 of 8)	8209	NM_153045	203197	Hs.522357	NM_153045	HPRD:12988	C9orf91	-	chromosome 9 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_29859	chr14	34848825	34848961	+	10.81825	NA	Intergenic	Intergenic	82575	NM_138288	171546	Hs.740577	NM_138288	HPRD:16610	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase, small subunit A	protein-coding
19-PTNLD28-TUMOR_peak_16238	chr10	129928467	129928619	+	10.81825	NA	Intergenic	Intergenic	-4075	NM_001145966	4288	Hs.80976	NM_002417	HPRD:08902	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
19-PTNLD28-TUMOR_peak_85545	chr6	14232213	14232347	+	10.81825	NA	Intergenic	L2c|LINE|L2	53405	NR_108097	102216342	Hs.563409	NR_108096		LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
19-PTNLD28-TUMOR_peak_69359	chr3	97684395	97684652	+	10.81825	NA	intron (NM_001261829, intron 2 of 9)	intron (NM_001261829, intron 2 of 9)	6772	NM_001261829	84864	Hs.570562	NM_032778	HPRD:17575	MINA	MDIG|MINA53|NO52|ROX	MYC induced nuclear antigen	protein-coding
19-PTNLD28-TUMOR_peak_39109	chr16	84706059	84706165	+	10.81825	NA	Intergenic	Intergenic	23981	NM_024731	79786	Hs.222731	NM_024731	HPRD:12675	KLHL36	C16orf44	kelch-like family member 36	protein-coding
19-PTNLD28-TUMOR_peak_96461	chr7	152133382	152133640	+	10.81658	NA	promoter-TSS (NR_002935)	promoter-TSS (NR_002935)	-421	NM_170606	58508	Hs.647120	NM_021230	HPRD:06016	KMT2C	HALR|MLL3	lysine (K)-specific methyltransferase 2C	protein-coding
19-PTNLD28-TUMOR_peak_52023	chr2	32287170	32287272	+	10.81658	NA	Intergenic	AluJb|SINE|Alu	-1459	NM_199436	6683	Hs.468091	NM_014946	HPRD:05044	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
19-PTNLD28-TUMOR_peak_77072	chr4	130017234	130017555	+	10.81658	NA	intron (NM_001099783, intron 1 of 5)	intron (NM_001099783, intron 1 of 5)	112	NM_001099783	132321	Hs.567679	NM_173487	HPRD:14049	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_22380	chr12	648332	648650	+	10.81435	NA	intron (NM_173593, intron 3 of 19)	intron (NM_173593, intron 3 of 19)	71088	NM_001294345	4815	Hs.655804	NM_016533	HPRD:09530	NINJ2	-	ninjurin 2	protein-coding
19-PTNLD28-TUMOR_peak_29016	chr13	109924398	109924551	+	10.81397	NA	Intergenic	LTR9|LTR|ERV1	-104823	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_839	chr1	12292383	12292499	+	10.81397	NA	intron (NM_015378, intron 1 of 69)	intron (NM_015378, intron 1 of 69)	2328	NM_018156	55187	Hs.439381	NM_015378	HPRD:10593	VPS13D	-	vacuolar protein sorting 13 homolog D (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_105226	chr9	110512427	110512571	+	10.81397	NA	Intergenic	Intergenic	-260452	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_2431	chr1	36724711	36724821	+	10.80640	NA	intron (NM_005119, intron 1 of 11)	intron (NM_005119, intron 1 of 11)	34749	NM_005119	9967	Hs.744057	NM_005119	HPRD:07543	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_17753	chr11	28131803	28132004	+	10.80640	NA	5' UTR (NM_152636, exon 2 of 8)	5' UTR (NM_152636, exon 2 of 8)	2105	NM_001297775	196074	Hs.243326	NM_152636	HPRD:08750	METTL15	METT5D1	methyltransferase like 15	protein-coding
19-PTNLD28-TUMOR_peak_50875	chr2	7006645	7006774	+	10.80640	NA	promoter-TSS (NM_207315)	promoter-TSS (NM_207315)	57	NR_046236	129607	Hs.7155	NM_207315	HPRD:11233	CMPK2	TMPK2|TYKi|UMP-CMPK2	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_60791	chr20	35083653	35083924	+	10.80546	NA	intron (NM_014902, intron 7 of 12)	intron (NM_014902, intron 7 of 12)	-6030	NM_001042486	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_18811	chr11	60691842	60692018	+	10.80282	NA	promoter-TSS (NM_017870)	promoter-TSS (NM_017870)	17	NM_017870	54972	Hs.118552	NM_017870	HPRD:11034	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
19-PTNLD28-TUMOR_peak_48137	chr19	19285649	19285971	+	10.80282	NA	intron (NR_027307, intron 5 of 12)	intron (NR_027307, intron 5 of 12)	-4712	NM_001145785	100271849	Hs.153629	NM_001145785	ENSG00000064489	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
19-PTNLD28-TUMOR_peak_92428	chr7	47445244	47445891	+	10.80282	NA	intron (NM_022748, intron 13 of 30)	intron (NM_022748, intron 13 of 30)	176175	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_6000	chr1	120535847	120536077	+	10.80282	NA	intron (NM_024408, intron 4 of 33)	intron (NM_024408, intron 4 of 33)	76355	NM_001200001	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_87039	chr6	35659224	35659337	+	10.79949	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-2561	NM_004117	2289	Hs.407190	NM_004117	HPRD:04019	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_87162	chr6	37019242	37019480	+	10.79949	NA	Intergenic	Intergenic	45938	NM_173558	221472	Hs.509664	NM_173558	HPRD:05478	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_86031	chr6	25182181	25182350	+	10.79649	NA	Intergenic	AluJr|SINE|Alu	-43645	NR_027626	8418	Hs.484918	NR_002174		CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_47742	chr19	15673847	15674008	+	10.79649	NA	Intergenic	Intergenic	-52102	NM_007253	11283	Hs.268554	NM_007253		CYP4F8	CPF8|CYPIVF8	cytochrome P450, family 4, subfamily F, polypeptide 8	protein-coding
19-PTNLD28-TUMOR_peak_19960	chr11	73464000	73464314	+	10.79649	NA	intron (NM_198896, intron 1 of 7)	AluJr|SINE|Alu	6981	NM_001243719	5870	Hs.503222	NM_002869	HPRD:01543	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_84520	chr5	179568189	179568455	+	10.79649	NA	intron (NM_175062, intron 1 of 13)	L1MB3|LINE|L1	67808	NM_175062	255426	Hs.190559	NM_175062	HPRD:15212	RASGEF1C	-	RasGEF domain family, member 1C	protein-coding
19-PTNLD28-TUMOR_peak_26018	chr12	106502377	106502487	+	10.79649	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	31379	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_91857	chr7	30725822	30726054	+	10.79649	NA	intron (NM_001202475, intron 2 of 12)	intron (NM_001202475, intron 2 of 12)	-3797	NM_001202483	1395	Hs.546246	NM_001883		CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_48051	chr19	18444584	18444701	+	10.79649	NA	Intergenic	AluSz|SINE|Alu	-6755	NM_001300927	54858	Hs.131776	NM_017712	HPRD:07141	PGPEP1	PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
19-PTNLD28-TUMOR_peak_49524	chr19	47232141	47232291	+	10.79649	NA	intron (NM_013403, intron 6 of 17)	intron (NM_013403, intron 6 of 17)	-11832	NM_001079881	25865	Hs.466987	NM_016457	HPRD:09523	PRKD2	PKD2|nPKC-D2	protein kinase D2	protein-coding
19-PTNLD28-TUMOR_peak_101740	chr8	145494884	145495063	+	10.79273	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	4426	NM_001080514	642658	Hs.553250	NM_001008271	ENSG00000187786	SCX	SCXA|SCXB|bHLHa48	scleraxis basic helix-loop-helix transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_7290	chr1	156215402	156216055	+	10.79273	NA	exon (NM_198406, exon 4 of 8)	exon (NM_198406, exon 4 of 8)	2180	NM_001272106	79957	Hs.235873	NM_024897	HPRD:17820	PAQR6	-	progestin and adipoQ receptor family member VI	protein-coding
19-PTNLD28-TUMOR_peak_6142	chr1	143893288	143893411	+	10.79273	NA	Intergenic	Intergenic	19794	NM_207418	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72, member D	protein-coding
19-PTNLD28-TUMOR_peak_26515	chr12	117563160	117563296	+	10.79219	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	25956	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_82739	chr5	140997717	140997929	+	10.79219	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	799	NM_001079812	1729	Hs.529451	NM_005219	HPRD:03670	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|hDIA1	diaphanous-related formin 1	protein-coding
19-PTNLD28-TUMOR_peak_19243	chr11	65084535	65084782	+	10.79219	NA	intron (NM_006779, intron 1 of 1)	intron (NM_006779, intron 1 of 1)	2369	NM_006779	10435	Hs.343380	NM_006779	HPRD:09363	CDC42EP2	BORG1|CEP2	CDC42 effector protein (Rho GTPase binding) 2	protein-coding
19-PTNLD28-TUMOR_peak_42021	chr17	46101941	46102091	+	10.79084	NA	Intergenic	CpG	12597	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	ncRNA
19-PTNLD28-TUMOR_peak_24715	chr12	57022665	57023013	+	10.79009	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	1276	NM_001300905	11176	Hs.314263	NM_013449	HPRD:10417	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain, 2A	protein-coding
19-PTNLD28-TUMOR_peak_17458	chr11	17373755	17373882	+	10.79009	NA	intron (NM_001202439, intron 1 of 4)	AluY|SINE|Alu	509	NM_001202439	374383	Hs.146274	NM_001009913	HPRD:16820	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_31829	chr14	94577356	94577513	+	10.79009	NA	intron (NM_001288957, intron 1 of 4)	intron (NM_001288957, intron 1 of 4)	273	NM_001288957	3429	Hs.532634	NM_005532	HPRD:02479	IFI27	FAM14D|ISG12|ISG12A|P27	interferon, alpha-inducible protein 27	protein-coding
19-PTNLD28-TUMOR_peak_7215	chr1	155568887	155569018	+	10.79009	NA	Intergenic	AluJb|SINE|Alu	-11009	NR_046295	55154	Hs.656547	NM_018116	HPRD:16904	MSTO1	MST	misato 1, mitochondrial distribution and morphology regulator	protein-coding
19-PTNLD28-TUMOR_peak_80556	chr5	71402973	71403241	+	10.79009	NA	promoter-TSS (NM_005909)	promoter-TSS (NM_005909)	-11	NM_005909	4131	Hs.335079	NM_005909	HPRD:01139	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule-associated protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_82178	chr5	133167310	133167581	+	10.79009	NA	Intergenic	Intergenic	136961	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_90822	chr7	1233579	1233750	+	10.79009	NA	Intergenic	Intergenic	33243	NR_110070	101927021	Hs.529566	NR_110065		LOC101927021	-	uncharacterized LOC101927021	ncRNA
19-PTNLD28-TUMOR_peak_91383	chr7	16974713	16974823	+	10.79009	NA	Intergenic	MER5A|DNA|hAT-Charlie	-53155	NM_176813	155465	Hs.100686	NM_176813	HPRD:16545	AGR3	AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3	protein-coding
19-PTNLD28-TUMOR_peak_11348	chr1	243431720	243431870	+	10.78863	NA	intron (NM_006642, intron 1 of 17)	intron (NM_006642, intron 1 of 17)	12488	NM_006642	10806	Hs.591530	NM_006642	HPRD:10215	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
19-PTNLD28-TUMOR_peak_12257	chr10	19149622	19150017	+	10.78863	NA	Intergenic	Intergenic	-187881	NM_001142308	340895	Hs.646734	NM_001142308		MALRD1	C10orf112|DIET1|bA265G8.2	MAM and LDL receptor class A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_60452	chr20	30457814	30458440	+	10.78863	NA	promoter-TSS (NM_177991)	promoter-TSS (NM_177991)	-116	NM_177991	128853	Hs.585017	NM_080611	HPRD:13252	DUSP15	VHY	dual specificity phosphatase 15	protein-coding
19-PTNLD28-TUMOR_peak_62062	chr20	52329143	52329424	+	10.78863	NA	Intergenic	Intergenic	-129647	NM_006526	7764	Hs.155040	NM_006526	HPRD:04272	ZNF217	ZABC1	zinc finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_104571	chr9	94489669	94489850	+	10.78863	NA	intron (NM_004560, intron 7 of 8)	intron (NM_004560, intron 7 of 8)	-91132	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	ncRNA
19-PTNLD28-TUMOR_peak_2281	chr1	34923571	34923679	+	10.78863	NA	Intergenic	Intergenic	281072	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_106674	chr9	138018468	138018647	+	10.78863	NA	Intergenic	Intergenic	39043	NM_001282611	10439	Hs.522484	NM_006334	HPRD:09249	OLFM1	AMY|NOE1|NOELIN1|OlfA	olfactomedin 1	protein-coding
19-PTNLD28-TUMOR_peak_93305	chr7	73928701	73928852	+	10.78863	NA	intron (NM_005685, intron 3 of 26)	intron (NM_005685, intron 3 of 26)	60656	NM_001199207	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61184	chr20	42165614	42165761	+	10.78863	NA	intron (NM_032107, intron 19 of 21)	MIRb|SINE|MIR	-21948	NM_170693	10110	Hs.300863	NM_016276	HPRD:06348	SGK2	H-SGK2|dJ138B7.2	serum/glucocorticoid regulated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_93587	chr7	77669638	77669770	+	10.78863	NA	intron (NM_001301128, intron 20 of 20)	CpG	200257	NM_001127357	57157	Hs.203965	NM_020432	HPRD:15130	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_91065	chr7	5336496	5336749	+	10.78863	NA	exon (NM_001040661, exon 7 of 11)	exon (NM_001040661, exon 7 of 11)	14061	NM_001040661	222962	Hs.4302	NM_153247	HPRD:15362	SLC29A4	ENT4|PMAT	solute carrier family 29 (equilibrative nucleoside transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_33217	chr15	41151394	41151589	+	10.78863	NA	Intergenic	Intergenic	14848	NM_001032367	6692	Hs.233950	NM_003710	HPRD:05494	SPINT1	HAI|HAI1|MANSC2	serine peptidase inhibitor, Kunitz type 1	protein-coding
19-PTNLD28-TUMOR_peak_2192	chr1	33439167	33439355	+	10.78438	NA	Intergenic	SVA_E|Other|Other	-8847	NM_001127361	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_45595	chr18	45753748	45753864	+	10.78438	NA	Intergenic	Intergenic	-90126	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_100198	chr8	117484893	117485079	+	10.78438	NA	Intergenic	Intergenic	-147689	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
19-PTNLD28-TUMOR_peak_53134	chr2	65455470	65455606	+	10.78438	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	709	NM_001005386	10097	Hs.643727	NM_005722	HPRD:05023	ACTR2	ARP2	ARP2 actin-related protein 2 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_105902	chr9	124432831	124433030	+	10.78438	NA	intron (NM_032552, intron 1 of 16)	MLT1E2|LTR|ERVL-MaLR	-72134	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_60575	chr20	32098336	32098705	+	10.78438	NA	intron (NM_001032999, intron 1 of 10)	L1PA6|LINE|L1	20592	NM_001032999	9139	Hs.153934	NM_005093	HPRD:04721	CBFA2T2	EHT|MTGR1|ZMYND3|p85	core-binding factor, runt domain, alpha subunit 2; translocated to, 2	protein-coding
19-PTNLD28-TUMOR_peak_1692	chr1	26848224	26848429	+	10.78438	NA	Intergenic	L2a|LINE|L2	-7923	NM_002953	6195	Hs.149957	NM_002953	HPRD:03402	RPS6KA1	HU-1|MAPKAPK1A|RSK|RSK1	ribosomal protein S6 kinase, 90kDa, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_68467	chr3	55226207	55226374	+	10.78438	NA	Intergenic	Intergenic	-264218	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_76056	chr4	84528105	84528333	+	10.78438	NA	Intergenic	Intergenic	70749	NM_032717	84803	Hs.99196	NM_032717	HPRD:14417	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
19-PTNLD28-TUMOR_peak_96668	chr7	156351820	156352072	+	10.78438	NA	intron (NR_103858, intron 1 of 1)	intron (NR_103858, intron 1 of 1)	18761	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	ncRNA
19-PTNLD28-TUMOR_peak_36411	chr16	14191096	14191288	+	10.78438	NA	intron (NM_014048, intron 2 of 16)	intron (NM_014048, intron 2 of 16)	25996	NM_014048	57496	Hs.49143	NM_014048	HPRD:17577	MKL2	MRTF-B|MRTFB|NPD001	MKL/myocardin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_101709	chr8	145118274	145118759	+	10.78438	NA	Intergenic	Intergenic	-2910	NM_017570	26873	Hs.305882	NM_017570	HPRD:14880	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase (ATP-hydrolysing)	protein-coding
19-PTNLD28-TUMOR_peak_100930	chr8	130738619	130738793	+	10.78438	NA	Intergenic	Intergenic	60428	NM_031415	56169	Hs.133244	NM_031415	HPRD:12222	GSDMC	MLZE	gasdermin C	protein-coding
19-PTNLD28-TUMOR_peak_88699	chr6	89777654	89777822	+	10.78438	NA	Intergenic	Intergenic	-12691	NM_006813	10957	Hs.75969	NM_006813	HPRD:08412	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline-rich nuclear receptor coactivator 1	protein-coding
19-PTNLD28-TUMOR_peak_10397	chr1	224820052	224820170	+	10.78438	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	15932	NM_152495	149111	Hs.731723	NM_152495	HPRD:08799	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
19-PTNLD28-TUMOR_peak_20170	chr11	76495543	76495773	+	10.78438	NA	intron (NM_015516, intron 1 of 1)	CpG	1373	NM_015516	25987	Hs.8361	NM_015516	HPRD:12152	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19-PTNLD28-TUMOR_peak_85068	chr6	6333906	6334037	+	10.78438	NA	Intergenic	MER89|LTR|ERV1	-13047	NM_000129	2162	Hs.335513	NM_000129	HPRD:00604	F13A1	F13A	coagulation factor XIII, A1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_19109	chr11	63890626	63890751	+	10.78438	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	19326	NM_013280	23769	Hs.584876	NM_013280	HPRD:05311	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91356	chr7	16256496	16256628	+	10.78438	NA	intron (NM_001101417, intron 7 of 8)	L1PA2|LINE|L1	6451	NR_038947	100506025	Hs.649029	NR_038946	ENSG00000229688	ISPD-AS1	-	ISPD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19873	chr11	72182456	72182578	+	10.78438	NA	Intergenic	LTR16C|LTR|ERVL	-36793	NM_001258392	81570	Hs.523877	NM_030813	HPRD:11560	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_34569	chr15	75628304	75628633	+	10.78438	NA	promoter-TSS (NM_001284379)	promoter-TSS (NM_001284379)	43	NM_001284379	54939	Hs.351327	NM_017828	HPRD:13083	COMMD4	-	COMM domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_65647	chr22	41117315	41117553	+	10.78438	NA	Intergenic	Intergenic	42252	NM_005297	2847	Hs.248122	NM_005297	HPRD:11874	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin-concentrating hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_109565	chrX	134758369	134758759	+	10.78438	NA	Intergenic	LTR43|LTR|ERV1	-88621	NM_001017417	541466	Hs.460937	NM_001017417	HPRD:18673	CT45A1	CT45|CT45-1|CT45.1	cancer/testis antigen family 45, member A1	protein-coding
19-PTNLD28-TUMOR_peak_91230	chr7	7171012	7171257	+	10.78438	NA	Intergenic	Intergenic	-34717	NR_034022	100131257	Hs.551110	NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_60402	chr20	30111502	30111776	+	10.78438	NA	intron (NM_178580, intron 1 of 12)	intron (NM_178580, intron 1 of 12)	9426	NM_178582	81502	Hs.373741	NM_030789	HPRD:06166	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1|dJ324O17.1	histocompatibility (minor) 13	protein-coding
19-PTNLD28-TUMOR_peak_12770	chr10	31236422	31236538	+	10.78438	NA	intron (NM_001143767, intron 1 of 5)	L1P1|LINE|L1	51966	NM_001143769	220929	Hs.660642	NM_182755	HPRD:11247	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
19-PTNLD28-TUMOR_peak_70129	chr3	121820566	121820695	+	10.78438	NA	intron (NM_001206924, intron 2 of 5)	intron (NM_001206924, intron 2 of 5)	23934	NM_176892	942	Hs.171182	NM_006889	HPRD:03011	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
19-PTNLD28-TUMOR_peak_61588	chr20	46913745	46913912	+	10.78438	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-74826	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_21728	chr11	122427397	122427542	+	10.78438	NA	Intergenic	LTR12D|LTR|ERV1	-98929	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_10050	chr1	215649208	215649348	+	10.78438	NA	Intergenic	L2a|LINE|L2	-91457	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_81646	chr5	114685173	114685362	+	10.78438	NA	Intergenic	Intergenic	-52809	NM_001040440	153733	Hs.436121	NM_152549	HPRD:11346	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
19-PTNLD28-TUMOR_peak_6898	chr1	152724864	152724981	+	10.78438	NA	Intergenic	L2c|LINE|L2	-5584	NM_001025231	448834	Hs.149386	NM_001025231	ENSG00000203786	KPRP	C1orf45	keratinocyte proline-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_104245	chr9	87654158	87654350	+	10.78438	NA	Intergenic	Intergenic	368962	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_14078	chr10	71626559	71626715	+	10.78313	NA	intron (NM_080798, intron 3 of 34)	intron (NM_080798, intron 3 of 34)	64993	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_79134	chr5	16935835	16936205	+	10.78313	NA	5' UTR (NM_012334, exon 1 of 41)	5' UTR (NM_012334, exon 1 of 41)	365	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_28839	chr13	100148506	100148727	+	10.78313	NA	intron (NR_110731, intron 3 of 4)	MER51A|LTR|ERV1	2944	NR_110731	102725509	Hs.648968	NR_110731		LINC01232	-	long intergenic non-protein coding RNA 1232	ncRNA
19-PTNLD28-TUMOR_peak_6344	chr1	145744252	145744410	+	10.78313	NA	intron (NM_002614, intron 2 of 9)	intron (NM_002614, intron 2 of 9)	16665	NM_001201326	5174	Hs.444751	NM_002614	HPRD:04829	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_93407	chr7	75115109	75115338	+	10.78287	NA	5' UTR (NM_001099415, exon 1 of 15)	5' UTR (NM_001099415, exon 1 of 15)	342	NM_001099415	100101267	Hs.712563	NM_001099415	ENSG00000135213	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
19-PTNLD28-TUMOR_peak_86812	chr6	33239322	33239555	+	10.78287	NA	promoter-TSS (NM_022551).4	promoter-TSS (NM_022551).4	304	NM_001289175	6293	Hs.480356	NM_022553	HPRD:09142	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	vacuolar protein sorting 52 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_16686	chr11	2906966	2907133	+	10.78287	NA	promoter-TSS (NM_001122631)	promoter-TSS (NM_001122631)	-54	NM_000076	1028	Hs.106070	NM_000076	HPRD:02913	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin-dependent kinase inhibitor 1C (p57, Kip2)	protein-coding
19-PTNLD28-TUMOR_peak_37164	chr16	29818939	29819411	+	10.78217	NA	intron (NM_001276275, intron 3 of 5)	CpG	1317	NM_001276276	4150	Hs.23650	NM_002383	HPRD:02999	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_6480	chr1	147551084	147551334	+	10.77911	NA	Intergenic	Intergenic	56883	NM_001101663	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_32048	chr14	100616349	100616652	+	10.77911	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	9512	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_35651	chr16	770452	770762	+	10.77527	NA	promoter-TSS (NM_023933)	promoter-TSS (NM_023933)	-535	NM_023933	65990	Hs.166244	NM_023933	HPRD:14500	FAM173A	C16orf24	family with sequence similarity 173, member A	protein-coding
19-PTNLD28-TUMOR_peak_68131	chr3	49506925	49507170	+	10.77527	NA	promoter-TSS (NM_001177635)	promoter-TSS (NM_001177635)	-518	NM_001177640	1605	Hs.76111	NM_004393	HPRD:00546	DAG1	156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9	dystroglycan 1 (dystrophin-associated glycoprotein 1)	protein-coding
19-PTNLD28-TUMOR_peak_66808	chr3	14294349	14294552	+	10.77088	NA	Intergenic	Intergenic	74222	NM_014463	27258	Hs.111632	NM_014463		LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_62903	chr21	19273068	19273321	+	10.77088	NA	Intergenic	L1PB1|LINE|L1	-15269	NR_024354	54075	Hs.404306	NR_024354		CHODL-AS1	C21orf39|NCRNA00157	CHODL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100474	chr8	123726404	123726665	+	10.77078	NA	Intergenic	L1MC4a|LINE|L1	-67367	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_26310	chr12	111358305	111358550	+	10.77078	NA	promoter-TSS (NM_000432)	promoter-TSS (NM_000432)	-23	NM_000432	4633	Hs.75535	NM_000432	HPRD:01181	MYL2	CMH10|MLC2	myosin, light chain 2, regulatory, cardiac, slow	protein-coding
19-PTNLD28-TUMOR_peak_40114	chr17	8568994	8569266	+	10.77078	NA	Intergenic	Intergenic	-35051	NM_001256012	4628	Hs.16355	NM_005964	HPRD:01178	MYH10	NMMHC-IIB|NMMHCB	myosin, heavy chain 10, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_93932	chr7	92271114	92271406	+	10.77078	NA	intron (NM_001259, intron 5 of 7)	intron (NM_001259, intron 5 of 7)	-51552	NR_109929	257415	Hs.18564	NM_152789	HPRD:17557	FAM133B	-	family with sequence similarity 133, member B	protein-coding
19-PTNLD28-TUMOR_peak_96964	chr8	7255434	7255575	+	10.77078	NA	Intergenic	Intergenic	18850	NM_001205266	100289462	Hs.740237	NM_001205266	ENSG00000177257	DEFB4B	DEFB4P	defensin, beta 4B	protein-coding
19-PTNLD28-TUMOR_peak_26732	chr12	121679101	121679313	+	10.77078	NA	intron (NM_172226, intron 15 of 15)	intron (NM_172226, intron 15 of 15)	31543	NM_002560	5025	Hs.321709	NM_002560	HPRD:09017	P2RX4	P2X4|P2X4R	purinergic receptor P2X, ligand-gated ion channel, 4	protein-coding
19-PTNLD28-TUMOR_peak_15309	chr10	103825634	103825876	+	10.77078	NA	exon (NM_024747, exon 1 of 1)	exon (NM_024747, exon 1 of 1)	631	NM_024747	79803	Hs.125133	NM_024747	HPRD:08471	HPS6	-	Hermansky-Pudlak syndrome 6	protein-coding
19-PTNLD28-TUMOR_peak_21700	chr11	121526244	121526450	+	10.77078	NA	Intergenic	Intergenic	203435	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_16628	chr11	2008458	2008736	+	10.77078	NA	intron (NR_024471, intron 1 of 3)	(CAGGG)n|Simple_repeat|Simple_repeat	2553	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102566	chr9	27534793	27535016	+	10.77078	NA	Intergenic	Intergenic	-5054	NM_024761	79817	Hs.369022	NM_024761	HPRD:14728	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
19-PTNLD28-TUMOR_peak_49911	chr19	50599223	50599399	+	10.76864	NA	Intergenic	Intergenic	1892	NR_024225	100169954	Hs.723094	NR_024225		SNAR-A11	-	small ILF3/NF90-associated RNA A11	snRNA
19-PTNLD28-TUMOR_peak_55891	chr2	134894824	134895057	+	10.76506	NA	Intergenic	Intergenic	10244	NR_037450	100500878		NR_037450	miRBase:MI0016080	MIR3679	-	microRNA 3679	ncRNA
19-PTNLD28-TUMOR_peak_84179	chr5	174921860	174922000	+	10.76506	NA	intron (NM_022754, intron 2 of 10)	L1MB3|LINE|L1	16416	NM_022754	94081	Hs.369440	NM_022754	HPRD:18044	SFXN1	-	sideroflexin 1	protein-coding
19-PTNLD28-TUMOR_peak_11205	chr1	238027709	238028199	+	10.76506	NA	intron (NR_027247, intron 2 of 11)	intron (NR_027247, intron 2 of 11)	2479	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_87109	chr6	36607334	36607452	+	10.76506	NA	Intergenic	U1|snRNA|snRNA	-17104	NR_037491	100500885		NR_037491	miRBase:MI0016433	MIR3925	-	microRNA 3925	ncRNA
19-PTNLD28-TUMOR_peak_81418	chr5	105429952	105430169	+	10.76506	NA	Intergenic	Intergenic	916655	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_33192	chr15	40875962	40876150	+	10.76506	NA	Intergenic	AluYc3|SINE|Alu	-10391	NM_170589	57082	Hs.181855	NM_144508	HPRD:10634	CASC5	AF15Q14|CT29|D40|KNL1|PPP1R55|Spc7|hKNL-1|hSpc105	cancer susceptibility candidate 5	protein-coding
19-PTNLD28-TUMOR_peak_37642	chr16	47892390	47892511	+	10.76506	NA	promoter-TSS (NR_110650)	promoter-TSS (NR_110650)	-42	NR_110650	101927132	Hs.589404	NR_110650	ENSG00000261231	LOC101927132	-	uncharacterized LOC101927132	ncRNA
19-PTNLD28-TUMOR_peak_53144	chr2	65648401	65648538	+	10.76506	NA	intron (NM_181784, intron 1 of 5)	intron (NM_181784, intron 1 of 5)	11187	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102820	chr9	34958256	34958389	+	10.76506	NA	5' UTR (NM_015297, exon 1 of 8)	5' UTR (NM_015297, exon 1 of 8)	130	NM_015297	23349	Hs.7989	NM_015297	ENSG00000122733	KIAA1045	-	KIAA1045	protein-coding
19-PTNLD28-TUMOR_peak_97675	chr8	23284827	23285040	+	10.76506	NA	Intergenic	Intergenic	-23211	NM_002318	4017	Hs.626637	NM_002318	HPRD:09446	LOXL2	LOR2|WS9-14	lysyl oxidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_21810	chr11	123414691	123414843	+	10.76506	NA	intron (NM_001286563, intron 1 of 20)	intron (NM_001286563, intron 1 of 20)	-16203	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_101161	chr8	134696294	134696468	+	10.76506	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	93214	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
19-PTNLD28-TUMOR_peak_72079	chr3	159816093	159816352	+	10.76506	NA	intron (NR_108088, intron 3 of 9)	MLT1N2|LTR|ERVL-MaLR	77786	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
19-PTNLD28-TUMOR_peak_43101	chr17	66072419	66072565	+	10.76506	NA	Intergenic	L1MB7|LINE|L1	-25204	NR_027418	100499466	Hs.591212	NR_027418		LINC00674	-	long intergenic non-protein coding RNA 674	ncRNA
19-PTNLD28-TUMOR_peak_45747	chr18	48176226	48176385	+	10.76506	NA	intron (NM_001292039, intron 1 of 4)	intron (NM_001292039, intron 1 of 4)	89821	NM_001292039	5596	Hs.433728	NM_002747	HPRD:01497	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_53618	chr2	75660224	75660459	+	10.76506	NA	Intergenic	L1P3b|LINE|L1	-90853	NR_110281	101927884	Hs.671110	NR_110281	ENSG00000231172	LOC101927884	-	uncharacterized LOC101927884	ncRNA
19-PTNLD28-TUMOR_peak_95168	chr7	128637183	128637372	+	10.76506	NA	intron (NM_012470, intron 8 of 22)	AluJo|SINE|Alu	56553	NM_001098627	3663	Hs.521181	NM_032643	HPRD:06240	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
19-PTNLD28-TUMOR_peak_26855	chr12	123021732	123021829	+	10.76506	NA	intron (NM_014708, intron 3 of 63)	L2a|LINE|L2	9971	NM_014708	9735	Hs.300559	NM_014708	HPRD:09561	KNTC1	ROD	kinetochore associated 1	protein-coding
19-PTNLD28-TUMOR_peak_22441	chr12	1743903	1744007	+	10.76506	NA	intron (NM_030775, intron 3 of 4)	intron (NM_030775, intron 3 of 4)	5543	NM_032642	81029	Hs.306051	NM_030775	HPRD:05899	WNT5B	-	wingless-type MMTV integration site family, member 5B	protein-coding
19-PTNLD28-TUMOR_peak_49914	chr19	50604258	50604430	+	10.76106	NA	promoter-TSS (NR_024215).4	promoter-TSS (NR_024215).4	-76	NR_024242	100191063	Hs.723094	NR_024242		SNAR-A14	-	small ILF3/NF90-associated RNA A14	snRNA
19-PTNLD28-TUMOR_peak_47852	chr19	16935550	16935669	+	10.76026	NA	Intergenic	MER41A|LTR|ERV1	-4589	NM_015260	23309	Hs.13999	NM_015260	HPRD:09691	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
19-PTNLD28-TUMOR_peak_24333	chr12	52624292	52624423	+	10.75701	NA	Intergenic	Intergenic	-2597	NM_005556	3855	Hs.411501	NM_005556	HPRD:01014	KRT7	CK7|K2C7|K7|SCL	keratin 7	protein-coding
19-PTNLD28-TUMOR_peak_105992	chr9	126102479	126102634	+	10.75696	NA	Intergenic	Intergenic	-15890	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_49684	chr19	48829217	48829390	+	10.75692	NA	intron (NM_001425, intron 1 of 4)	intron (NM_001425, intron 1 of 4)	674	NM_001425	2014	Hs.9999	NM_001425	HPRD:18514	EMP3	YMP	epithelial membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_71395	chr3	141994741	141995025	+	10.75692	NA	Intergenic	Intergenic	-50434	NM_001039547	256356	Hs.135904	NM_152776	HPRD:14612	GK5	-	glycerol kinase 5 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_44166	chr17	81175493	81175690	+	10.75606	NA	intron (NR_029406, intron 1 of 3)	MER4D1|LTR|ERV1	925	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31632	chr14	90422735	90423123	+	10.75481	NA	5' UTR (NM_018319, exon 2 of 17)	5' UTR (NM_018319, exon 2 of 17)	683	NM_018319	55775	Hs.209945	NM_018319	HPRD:06226	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_100934	chr8	130896174	130896336	+	10.75481	NA	intron (NR_046359, intron 4 of 14)	intron (NR_046359, intron 4 of 14)	55863	NM_001256763	51571	Hs.126941	NM_016623	HPRD:13313	FAM49B	L1	family with sequence similarity 49, member B	protein-coding
19-PTNLD28-TUMOR_peak_27377	chr13	21141116	21141627	+	10.75460	NA	5' UTR (NM_006531, exon 1 of 26)	5' UTR (NM_006531, exon 1 of 26)	163	NM_175605	8100	Hs.187376	NM_006531	HPRD:09000	IFT88	D13S1056E|DAF19|TG737|TTC10|hTg737	intraflagellar transport 88	protein-coding
19-PTNLD28-TUMOR_peak_57285	chr2	182321931	182322138	+	10.75460	NA	5' UTR (NM_000885, exon 1 of 28)	5' UTR (NM_000885, exon 1 of 28)	415	NM_000885	3676	Hs.440955	NM_000885	HPRD:01894	ITGA4	CD49D|IA4	integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_43195	chr17	70100739	70100948	+	10.75460	NA	intron (NR_103738, intron 2 of 6)	intron (NR_103738, intron 2 of 6)	11314	NR_103738	400618	Hs.657374	NR_103737	ENSG00000234899	SOX9-AS1	-	SOX9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49124	chr19	41381432	41381810	+	10.75460	NA	exon (NM_000764, exon 9 of 9)	exon (NM_000764, exon 9 of 9)	7036	NM_000764	1549	Hs.719890	NM_000764	HPRD:07453	CYP2A7	CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4	cytochrome P450, family 2, subfamily A, polypeptide 7	protein-coding
19-PTNLD28-TUMOR_peak_65150	chr22	31885813	31886145	+	10.75460	NA	promoter-TSS (NM_001164501)	promoter-TSS (NM_001164501)	-105	NM_019843	56478	Hs.517559	NM_019843	HPRD:10456	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
19-PTNLD28-TUMOR_peak_3830	chr1	59347288	59347416	+	10.75460	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	96529	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_37443	chr16	32926871	32926970	+	10.75460	NA	Intergenic	Intergenic	-30457	NR_003083	386757	Hs.433146	NM_198857	HPRD:13479	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_69467	chr3	101422116	101422250	+	10.75460	NA	Intergenic	MLT2B3|LTR|ERVL	-9095	NR_002941	285359	Hs.720825	NR_002941		PDCL3P4	-	phosducin-like 3 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_16393	chr10	135132277	135132458	+	10.75460	NA	Intergenic	CpG	-6526	NR_046330	10844	Hs.523370	NM_006659		TUBGCP2	GCP-2|GCP2|Grip103|SPBC97|Spc97p|h103p|hGCP2|hSpc97	tubulin, gamma complex associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_83816	chr5	169230116	169230360	+	10.75230	NA	intron (NM_004946, intron 26 of 51)	intron (NM_004946, intron 26 of 51)	165987	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_49744	chr19	49199753	49199901	+	10.75230	NA	intron (NM_000511, intron 1 of 1)	intron (NM_000511, intron 1 of 1)	599	NM_001097638	2524	Hs.579928	NM_000511	HPRD:01629	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2 (secretor status included)	protein-coding
19-PTNLD28-TUMOR_peak_92700	chr7	56242956	56243069	+	10.75230	NA	Intergenic	CpG	-58922	NM_001145712	389493	Hs.177948	NM_001145712	ENSG00000185290	NUPR1L	-	nuclear protein, transcriptional regulator, 1-like	protein-coding
19-PTNLD28-TUMOR_peak_16015	chr10	123428239	123428438	+	10.75230	NA	Intergenic	Intergenic	-70366	NR_073009	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_8812	chr1	184119850	184120256	+	10.75230	NA	Intergenic	Intergenic	99268	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_66007	chr22	46846926	46847352	+	10.75230	NA	intron (NM_014246, intron 2 of 34)	intron (NM_014246, intron 2 of 34)	85928	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_4153	chr1	66737667	66737806	+	10.75230	NA	intron (NM_001297440, intron 6 of 15)	intron (NM_001297440, intron 6 of 15)	-60055	NM_001037339	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_23544	chr12	27863191	27863357	+	10.75230	NA	promoter-TSS (NM_001190864)	promoter-TSS (NM_001190864)	-432	NM_021821	60488	Hs.714076	NM_021821	HPRD:11373	MRPS35	MDS023|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding
19-PTNLD28-TUMOR_peak_84869	chr6	3231556	3232213	+	10.75230	NA	Intergenic	CpG	-3916	NM_178012	347733	Hs.300701	NM_178012	HPRD:14707	TUBB2B	PMGYSA|bA506K6.1	tubulin, beta 2B class IIb	protein-coding
19-PTNLD28-TUMOR_peak_952	chr1	15106798	15107208	+	10.75230	NA	intron (NM_201628, intron 1 of 14)	MIR|SINE|MIR	-143622	NM_001018000	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_831	chr1	12226931	12227138	+	10.75230	NA	promoter-TSS (NM_001066)	promoter-TSS (NM_001066)	-26	NM_001066	7133	Hs.256278	NM_001066	HPRD:01862	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	tumor necrosis factor receptor superfamily, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_53337	chr2	70316914	70317091	+	10.75177	NA	TTS (NM_006196)	TTS (NM_006196)	2417	NM_006196	5093	Hs.2853	NM_006196	HPRD:03128	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_53072	chr2	64681045	64681390	+	10.75177	NA	promoter-TSS (NM_014181)	promoter-TSS (NM_014181)	-110	NM_014181	29094	Hs.372208	NM_014181	HPRD:13708	LGALSL	GRP	lectin, galactoside-binding-like	protein-coding
19-PTNLD28-TUMOR_peak_43805	chr17	77020554	77020715	+	10.74416	NA	intron (NM_198594, intron 1 of 2)	CpG	476	NM_030968	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54098	chr2	91728575	91728765	+	10.74416	NA	Intergenic	Intergenic	119305	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65131	chr22	31608055	31608288	+	10.74172	NA	promoter-TSS (NM_005569)	promoter-TSS (NM_005569)	-79	NM_005569	3985	Hs.474596	NM_005569	HPRD:03585	LIMK2	-	LIM domain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_87026	chr6	35490728	35490838	+	10.74172	NA	Intergenic	Intergenic	-10104	NM_003322	7287	Hs.485208	NM_003322	HPRD:03788	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_71677	chr3	149973244	149973613	+	10.74172	NA	Intergenic	Intergenic	16941	NR_110167	101927992	Hs.534682	NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
19-PTNLD28-TUMOR_peak_1146	chr1	17386247	17386411	+	10.74172	NA	Intergenic	Intergenic	-5664	NM_003000	6390	Hs.465924	NM_003000	HPRD:01707	SDHB	CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding
19-PTNLD28-TUMOR_peak_17162	chr11	11444341	11444555	+	10.74172	NA	intron (NM_198516, intron 3 of 10)	intron (NM_198516, intron 3 of 10)	-69544	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_69147	chr3	75653429	75653561	+	10.74172	NA	Intergenic	HERVE-int|LTR|ERV1	-26419	NR_031714	100302212		NR_031714	miRBase:MI0006657	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
19-PTNLD28-TUMOR_peak_60179	chr20	22796654	22796918	+	10.74172	NA	Intergenic	Intergenic	-208631	NR_109883	101929685	Hs.563018	NR_109883		LINC01384	-	long intergenic non-protein coding RNA 1384	ncRNA
19-PTNLD28-TUMOR_peak_14947	chr10	95093513	95093720	+	10.74172	NA	exon (NM_013451, exon 42 of 54)	exon (NM_013451, exon 42 of 54)	148458	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_63716	chr21	43374473	43374693	+	10.74172	NA	promoter-TSS (NM_015500)	promoter-TSS (NM_015500)	-584	NM_015500	25966	Hs.473894	NM_015500	HPRD:10745	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium-dependent domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_68711	chr3	63037701	63037968	+	10.74172	NA	Intergenic	Intergenic	-50530	NR_027104	285401	Hs.211125	NR_027104	ENSG00000244342	LINC00698	-	long intergenic non-protein coding RNA 698	ncRNA
19-PTNLD28-TUMOR_peak_53774	chr2	85521430	85521611	+	10.74172	NA	intron (NM_031283, intron 4 of 11)	MER5A|DNA|hAT-Charlie	33899	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_109782	chrX	150528826	150529086	+	10.74172	NA	Intergenic	Intergenic	-36701	NM_001017980	203547	Hs.58633	NM_001017980	HPRD:18578	VMA21	MEAX|XMEA	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_72472	chr3	176997387	176997523	+	10.74172	NA	Intergenic	Intergenic	-14775	NR_047465	100820709	Hs.518409	NR_047465		LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
19-PTNLD28-TUMOR_peak_42912	chr17	62805900	62806043	+	10.74172	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	12249	NR_036199	100423004		NR_036199		MIR4315-1	-	microRNA 4315-1	ncRNA
19-PTNLD28-TUMOR_peak_106977	chrUn_gl000211	29800	29946	+	10.74172	NA	Intergenic	L2a|LINE|L2	-18630	NR_033856	644316	Hs.632789	NR_033856		FLJ43315	-	asparagine synthetase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53758	chr2	85242480	85242617	+	10.74172	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	44317	NM_020122	56888	Hs.654968	NM_020122	HPRD:13761	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_26004	chr12	106306932	106307108	+	10.74172	NA	Intergenic	Intergenic	206468	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82447	chr5	137689080	137689256	+	10.73908	NA	intron (NM_016604, intron 1 of 23)	intron (NM_016604, intron 1 of 23)	883	NM_016604	51780	Hs.483486	NM_016604	HPRD:11055	KDM3B	5qNCA|C5orf7|JMJD1B|NET22	lysine (K)-specific demethylase 3B	protein-coding
19-PTNLD28-TUMOR_peak_53485	chr2	73404086	73404294	+	10.73908	NA	Intergenic	CpG	-25196	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
19-PTNLD28-TUMOR_peak_2986	chr1	43760191	43760324	+	10.73908	NA	Intergenic	Intergenic	-6309	NM_001253357	7075	Hs.78824	NM_005424	HPRD:02572	TIE1	JTK14|TIE	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_56986	chr2	173292690	173292915	+	10.73908	NA	intron (NM_001079818, intron 1 of 24)	CpG	488	NM_001079818	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_44305	chr18	3015364	3015496	+	10.73908	NA	Intergenic	Intergenic	-3485	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_14060	chr10	71444577	71444767	+	10.73615	NA	Intergenic	Intergenic	54669	NM_145306	219738	Hs.522992	NM_145306	HPRD:12573	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
19-PTNLD28-TUMOR_peak_485	chr1	8075145	8075272	+	10.73615	NA	intron (NM_018948, intron 3 of 3)	intron (NM_018948, intron 3 of 3)	11185	NM_018948	54206	Hs.605445	NM_018948	HPRD:09218	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_67599	chr3	39173957	39174136	+	10.73615	NA	intron (NM_001105513, intron 18 of 27)	intron (NM_001105513, intron 18 of 27)	-5651	NR_106880	102466743		NR_106880		MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
19-PTNLD28-TUMOR_peak_28471	chr13	74709067	74709177	+	10.73615	NA	Intergenic	CpG	-1056	NM_007249	11278	Hs.373857	NM_007249	HPRD:06336	KLF12	AP-2rep|AP2REP	Kruppel-like factor 12	protein-coding
19-PTNLD28-TUMOR_peak_29380	chr14	21560808	21560910	+	10.73615	NA	exon (NM_001102454, exon 3 of 5)	exon (NM_001102454, exon 3 of 5)	5949	NM_016423	51222	Hs.250493	NM_016423	HPRD:05435	ZNF219	ZFP219	zinc finger protein 219	protein-coding
19-PTNLD28-TUMOR_peak_37394	chr16	32128101	32128210	+	10.73615	NA	Intergenic	Intergenic	71279	NR_109773	100289574	Hs.531536	NR_109773	ENSG00000230267	HERC2P4	D16F37S5	hect domain and RLD 2 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_39153	chr16	85185267	85185525	+	10.73615	NA	Intergenic	Intergenic	14640	NR_033984	400548	Hs.592054	NR_033984		LOC400548	-	uncharacterized LOC400548	ncRNA
19-PTNLD28-TUMOR_peak_106367	chr9	132258961	132259213	+	10.73536	NA	intron (NR_038955, intron 2 of 4)	CpG	8148	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
19-PTNLD28-TUMOR_peak_99205	chr8	74206811	74207371	+	10.73149	NA	5' UTR (NM_172037, exon 1 of 6)	5' UTR (NM_172037, exon 1 of 6)	254	NM_172037	157506	Hs.244940	NM_172037	HPRD:07605	RDH10	SDR16C4	retinol dehydrogenase 10 (all-trans)	protein-coding
19-PTNLD28-TUMOR_peak_96096	chr7	143985133	143985237	+	10.73149	NA	Intergenic	Intergenic	-2089	NR_033942	728377	Hs.744262	NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor (GEF) 34, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102867	chr9	35689538	35689996	+	10.73149	NA	exon (NM_213674, exon 1 of 9)	exon (NM_213674, exon 1 of 9)	286	NM_001301227	7169	Hs.300772	NM_003289	HPRD:11768	TPM2	AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB	tropomyosin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_7281	chr1	156123256	156123423	+	10.73149	NA	promoter-TSS (NM_001193300)	promoter-TSS (NM_001193300)	17	NM_001193300	64218	Hs.408846	NM_022367	HPRD:09528	SEMA4A	CORD10|RP35|SEMAB|SEMB	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding
19-PTNLD28-TUMOR_peak_100354	chr8	120428930	120429278	+	10.73149	NA	exon (NM_002514, exon 2 of 5)	exon (NM_002514, exon 2 of 5)	552	NM_002514	4856	Hs.235935	NM_002514	HPRD:01291	NOV	CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh	nephroblastoma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_45103	chr18	29090396	29090611	+	10.72529	NA	intron (NM_001943, intron 1 of 14)	intron (NM_001943, intron 1 of 14)	12476	NM_001943	1829	Hs.412597	NM_001943	HPRD:00516	DSG2	ARVC10|ARVD10|CDHF5|CMD1BB|HDGC	desmoglein 2	protein-coding
19-PTNLD28-TUMOR_peak_70065	chr3	119890950	119891066	+	10.72529	NA	intron (NM_153002, intron 8 of 8)	intron (NM_153002, intron 8 of 8)	72134	NM_001168271	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_40578	chr17	19622698	19622825	+	10.72412	NA	Intergenic	Intergenic	-2718	NM_001256663	146802	Hs.126830	NM_152908	HPRD:08710	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	solute carrier family 47 (multidrug and toxin extrusion), member 2	protein-coding
19-PTNLD28-TUMOR_peak_14535	chr10	80733335	80733625	+	10.72412	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	93725	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51487	chr2	20851281	20851469	+	10.72412	NA	promoter-TSS (NM_022460)	promoter-TSS (NM_022460)	-511	NM_022460	64342	Hs.531785	NM_022460	HPRD:13357	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_82607	chr5	139619990	139620103	+	10.72412	NA	intron (NM_032412, intron 2 of 2)	intron (NM_032412, intron 2 of 2)	62643	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_52991	chr2	62270224	62270363	+	10.72371	NA	intron (NM_152516, intron 2 of 2)	intron (NM_152516, intron 2 of 2)	137490	NM_152516	150684	Hs.468702	NM_152516		COMMD1	C2orf5|MURR1	copper metabolism (Murr1) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_93323	chr7	74064493	74064598	+	10.72371	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-7446	NM_032999	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_69769	chr3	111779898	111780036	+	10.72371	NA	intron (NR_026734, intron 9 of 16)	intron (NR_026734, intron 9 of 16)	21502	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
19-PTNLD28-TUMOR_peak_108422	chrX	54977265	54977473	+	10.72371	NA	intron (NM_002625, intron 8 of 13)	MIRb|SINE|MIR	30112	NM_001271184	7216	Hs.633653	NM_016157	HPRD:02134	TRO	MAGE-d3|MAGED3	trophinin	protein-coding
19-PTNLD28-TUMOR_peak_52240	chr2	38962899	38963244	+	10.72371	NA	Intergenic	LTR42|LTR|ERVL	15565	NM_001031684	6432	Hs.309090	NM_006276	HPRD:08991	SRSF7	9G8|AAG3|SFRS7	serine/arginine-rich splicing factor 7	protein-coding
19-PTNLD28-TUMOR_peak_69333	chr3	94464774	94464921	+	10.72371	NA	Intergenic	L1PA2|LINE|L1	-192260	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
19-PTNLD28-TUMOR_peak_105570	chr9	116969865	116970029	+	10.72371	NA	intron (NM_032888, intron 10 of 60)	intron (NM_032888, intron 10 of 60)	-1767	NR_030255	619556		NR_030255		MIR455	MIRN455|hsa-mir-455	microRNA 455	ncRNA
19-PTNLD28-TUMOR_peak_37743	chr16	50218463	50218771	+	10.72371	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	31788	NM_001040285	64282	Hs.514342	NM_022447	HPRD:16119	PAPD5	TRF4-2	PAP associated domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_10802	chr1	230933724	230933858	+	10.72371	NA	intron (NM_016452, intron 17 of 18)	intron (NM_016452, intron 17 of 18)	50630	NM_016452	10753	Hs.498021	NM_006615	HPRD:05909	CAPN9	GC36|nCL-4	calpain 9	protein-coding
19-PTNLD28-TUMOR_peak_67441	chr3	32986723	32986853	+	10.72371	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-6278	NM_005508	1233	Hs.184926	NM_005508		CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	chemokine (C-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_43094	chr17	66007360	66007493	+	10.72371	NA	Intergenic	L1M7|LINE|L1	-17661	NM_181656	284018	Hs.90790	NM_181655	HPRD:14151	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_97718	chr8	24050526	24050667	+	10.72371	NA	Intergenic	Intergenic	-100984	NM_021777	10863	Hs.174030	NM_014265	HPRD:08391	ADAM28	ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
19-PTNLD28-TUMOR_peak_25108	chr12	67749740	67749881	+	10.72371	NA	Intergenic	Intergenic	86749	NM_018448	55832	Hs.546407	NM_018448		CAND1	TIP120|TIP120A	cullin-associated and neddylation-dissociated 1	protein-coding
19-PTNLD28-TUMOR_peak_79667	chr5	41570183	41570328	+	10.72371	NA	Intergenic	L1PA3|LINE|L1	-59525	NM_001005473	345557	Hs.145404	NM_001005473	HPRD:17860	PLCXD3	-	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_84042	chr5	172581713	172581915	+	10.72371	NA	intron (NM_013978, intron 3 of 4)	AluSx1|SINE|Alu	10369	NM_013979	662	Hs.145726	NM_001205	HPRD:04480	BNIP1	NIP1|SEC20|TRG-8	BCL2/adenovirus E1B 19kDa interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82030	chr5	129885479	129885783	+	10.72371	NA	Intergenic	LTR71A|LTR|ERV1	615410	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_96230	chr7	149471597	149471792	+	10.72230	NA	Intergenic	Intergenic	-1399	NM_207336	168544	Hs.726477	NM_207336	HPRD:18343	ZNF467	EZI|Zfp467	zinc finger protein 467	protein-coding
19-PTNLD28-TUMOR_peak_26653	chr12	120730754	120731023	+	10.72230	NA	Intergenic	Intergenic	-9236	NM_012240	23409	Hs.50861	NM_012240	HPRD:06837	SIRT4	SIR2L4	sirtuin 4	protein-coding
19-PTNLD28-TUMOR_peak_60307	chr20	25234612	25234775	+	10.72022	NA	intron (NM_002862, intron 1 of 19)	AluSx1|SINE|Alu	5987	NM_002862	5834	Hs.368157	NM_002862	HPRD:00720	PYGB	GPBB	phosphorylase, glycogen; brain	protein-coding
19-PTNLD28-TUMOR_peak_99884	chr8	103807436	103807582	+	10.71493	NA	Intergenic	Intergenic	68888	NM_148174	51582	Hs.459106	NM_015878	HPRD:07443	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_57091	chr2	176045611	176045743	+	10.71424	NA	intron (NM_001002258, intron 1 of 3)	intron (NM_001002258, intron 1 of 3)	714	NM_001002258	518	Hs.429	NM_001689		ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_95824	chr7	140090607	140091023	+	10.71424	NA	intron (NM_001287498, intron 1 of 13)	L2a|LINE|L2	7535	NM_001287498	84255	Hs.446021	NM_032295	HPRD:15381	SLC37A3	-	solute carrier family 37, member 3	protein-coding
19-PTNLD28-TUMOR_peak_7297	chr1	156265171	156265547	+	10.71424	NA	exon (NM_001256608, exon 1 of 5)	exon (NM_001256608, exon 1 of 5)	121	NM_001256608	112770	Hs.202522	NM_144580	HPRD:14544	C1orf85	NCU-G1	chromosome 1 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_33920	chr15	63450196	63450392	+	10.71424	NA	promoter-TSS (NM_015920)	promoter-TSS (NM_015920)	-553	NM_015920	51065	Hs.108957	NM_015920	HPRD:18003	RPS27L	-	ribosomal protein S27-like	protein-coding
19-PTNLD28-TUMOR_peak_100776	chr8	127837124	127837469	+	10.71424	NA	Intergenic	Intergenic	-188103	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_17150	chr11	11265697	11265974	+	10.71424	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	109069	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_12964	chr10	36165309	36165452	+	10.71424	NA	Intergenic	Intergenic	98150	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_18381	chr11	46142890	46143263	+	10.71424	NA	promoter-TSS (NM_016621)	promoter-TSS (NM_016621)	-91	NM_016621	51317	Hs.502458	NM_016621	ENSG00000135365	PHF21A	BHC80	PHD finger protein 21A	protein-coding
19-PTNLD28-TUMOR_peak_35117	chr15	89456438	89456736	+	10.71424	NA	promoter-TSS (NM_005928)	promoter-TSS (NM_005928)	76	NM_005928	4240	Hs.3745	NM_005928	HPRD:03789	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule-EGF factor 8 protein	protein-coding
19-PTNLD28-TUMOR_peak_48509	chr19	32897946	32898117	+	10.71385	NA	intron (NM_207325, intron 1 of 18)	intron (NM_207325, intron 1 of 18)	1009	NM_207325	147991	Hs.194392	NM_207325	HPRD:14078	DPY19L3	-	dpy-19-like 3 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_51649	chr2	26256048	26256576	+	10.71385	NA	promoter-TSS (NM_016131)	promoter-TSS (NM_016131)	-417	NM_016131	10890	Hs.467960	NM_016131	HPRD:06692	RAB10	-	RAB10, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_16832	chr11	5617282	5617498	+	10.71269	NA	promoter-TSS (NM_001198645)	promoter-TSS (NM_001198645)	59	NM_058166	117854	Hs.729048	NM_058166	HPRD:12123	TRIM6	RNF89	tripartite motif containing 6	protein-coding
19-PTNLD28-TUMOR_peak_101828	chr8	146223074	146223248	+	10.71269	NA	non-coding (NR_002807, exon 1 of 1)	non-coding (NR_002807, exon 1 of 1)	2910	NR_002807	286102	Hs.744580	NR_002807		TMED10P1	TMED10P|Tmp21-II	transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_37089	chr16	29082090	29082215	+	10.71269	NA	Intergenic	AluSx|SINE|Alu	-4011	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_81088	chr5	89368988	89369334	+	10.71269	NA	Intergenic	L1PA2|LINE|L1	-56624	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_91677	chr7	25108588	25108715	+	10.71269	NA	Intergenic	L2a|LINE|L2	56329	NM_018947	54205	Hs.437060	NM_018947		CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
19-PTNLD28-TUMOR_peak_18297	chr11	45064179	45064295	+	10.71269	NA	Intergenic	Intergenic	-51327	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_81062	chr5	87976354	87976488	+	10.71269	NA	intron (NR_015436, intron 1 of 4)	CpG	-2159	NR_024383	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|Visc-1a|Visc-1b	long intergenic non-protein coding RNA 461	ncRNA
19-PTNLD28-TUMOR_peak_17693	chr11	26594408	26594742	+	10.71269	NA	promoter-TSS (NM_001135092)	promoter-TSS (NM_001135092)	-760	NM_001135091	143662	Hs.407152	NM_145650	HPRD:16349	MUC15	MUC-15|PAS3|PASIII	mucin 15, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_72451	chr3	176042636	176042914	+	10.71235	NA	Intergenic	HERVH-int|LTR|ERV1	310545	NR_109968	100505547	Hs.253350	NR_109968	ENSG00000223715	LINC01208	-	long intergenic non-protein coding RNA 1208	ncRNA
19-PTNLD28-TUMOR_peak_98530	chr8	43167849	43167948	+	10.71235	NA	intron (NM_001002920, intron 5 of 12)	L1PA2|LINE|L1	20313	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family, member A	protein-coding
19-PTNLD28-TUMOR_peak_50310	chr19	55290557	55290655	+	10.71235	NA	intron (NM_014218, intron 5 of 7)	intron (NM_014218, intron 5 of 7)	-8090	NR_110738	101928804	Hs.742628	NR_110737		LOC101928804	-	uncharacterized LOC101928804	ncRNA
19-PTNLD28-TUMOR_peak_106713	chr9	138884613	138884978	+	10.71235	NA	Intergenic	Intergenic	-31569	NM_016172	10422	Hs.9194	NM_016172	HPRD:12170	UBAC1	GBDR1|UBADC1	UBA domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73562	chr3	195980548	195980708	+	10.71235	NA	intron (NM_005017, intron 4 of 9)	intron (NM_005017, intron 4 of 9)	33956	NM_005017	5130	Hs.135997	NM_005017	HPRD:00438	PCYT1A	CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1, choline, alpha	protein-coding
19-PTNLD28-TUMOR_peak_51019	chr2	9977137	9977333	+	10.71235	NA	Intergenic	AluSz|SINE|Alu	-6336	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_86180	chr6	26698297	26698428	+	10.71235	NA	Intergenic	Intergenic	-38382	NM_001242799	79692	Hs.126280	NM_024639		ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
19-PTNLD28-TUMOR_peak_48849	chr19	38468840	38469014	+	10.71235	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	71066	NM_015073	23094	Hs.655502	NM_015073	HPRD:18755	SIPA1L3	SPAL3	signal-induced proliferation-associated 1 like 3	protein-coding
19-PTNLD28-TUMOR_peak_64848	chr22	25922304	25922591	+	10.71235	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-38414	NM_005160	157	Hs.657494	NM_005160	HPRD:00183	ADRBK2	BARK2|GRK3	adrenergic, beta, receptor kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_15509	chr10	106402537	106402667	+	10.71235	NA	intron (NM_014978, intron 1 of 26)	CpG-3271	1743	NM_014978	22986	Hs.671950	NM_014978	HPRD:12100	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_86334	chr6	28696430	28696639	+	10.71235	NA	Intergenic	Intergenic	134920	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_36640	chr16	19590441	19590765	+	10.71235	NA	intron (NM_001300743, intron 6 of 27)	intron (NM_001300743, intron 6 of 27)	23866	NM_001300743	57020	Hs.654964	NM_020314	HPRD:14455	C16orf62	-	chromosome 16 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_95612	chr7	136104660	136104791	+	10.71235	NA	Intergenic	L1PA2|LINE|L1	-442521	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_52898	chr2	57645871	57646102	+	10.71235	NA	Intergenic	L1PA2|LINE|L1	-488800	NM_001288837	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_91689	chr7	25419055	25419258	+	10.71235	NA	Intergenic	LTR43|LTR|ERV1	-151051	NM_022150	64111	Hs.60473	NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
19-PTNLD28-TUMOR_peak_13816	chr10	62637604	62637734	+	10.71235	NA	exon (NM_001242359, exon 9 of 12)	exon (NM_001242359, exon 9 of 12)	66364	NM_001242359	9886	Hs.737374	NM_014836	HPRD:06299	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16451	chr11	236152	236356	+	10.70747	NA	promoter-TSS (NM_175932)	promoter-TSS (NM_175932)	108	NM_001017524	23410	Hs.716456	NM_012239	HPRD:06836	SIRT3	SIR2L3	sirtuin 3	protein-coding
19-PTNLD28-TUMOR_peak_10443	chr1	225901128	225901236	+	10.70747	NA	Intergenic	AluSx|SINE|Alu	-60337	NM_018212	55740	Hs.497893	NM_018212	HPRD:12360	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_92626	chr7	55132946	55133053	+	10.70747	NA	intron (NM_201284, intron 1 of 15)	intron (NM_201284, intron 1 of 15)	46274	NM_005228	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_40653	chr17	21198627	21198922	+	10.70747	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	7426	NM_002756	5606	Hs.514012	NM_002756	HPRD:03816	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_65799	chr22	43486254	43486459	+	10.70747	NA	promoter-TSS (NR_027779)	promoter-TSS (NR_027779)	-922	NM_012263	25809	Hs.660298	NM_012263	HPRD:10604	TTLL1	C22orf7|HS323M22B	tubulin tyrosine ligase-like family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11815	chr10	5624869	5625084	+	10.70662	NA	Intergenic	Intergenic	-56767	NR_120497	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29917	chr14	35873016	35873138	+	10.70482	NA	intron (NM_020529, intron 1 of 5)	CpG	883	NM_020529	4792	Hs.81328	NM_020529	HPRD:01235	NFKBIA	IKBA|MAD-3|NFKBI	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_87082	chr6	36321212	36321398	+	10.70169	NA	TTS (NM_001207035)	TTS (NM_001207035)	-16643	NM_001010903	389384	Hs.162104	NM_001010903	HPRD:16824	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
19-PTNLD28-TUMOR_peak_39661	chr17	1933414	1933541	+	10.70169	NA	promoter-TSS (NM_001383)	promoter-TSS (NM_001383)	46	NM_001383	1801	Hs.513856	NM_001383	HPRD:04634	DPH1	DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
19-PTNLD28-TUMOR_peak_80664	chr5	73290775	73291108	+	10.70169	NA	Intergenic	Intergenic	181598	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_15715	chr10	115299614	115299734	+	10.70169	NA	Intergenic	Intergenic	-10916	NM_001177660	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_83214	chr5	149999012	149999188	+	10.69701	NA	intron (NM_001166208, intron 2 of 2)	intron (NM_001166208, intron 2 of 2)	1894	NM_001166209	11346	Hs.435228	NM_007286	HPRD:12179	SYNPO	-	synaptopodin	protein-coding
19-PTNLD28-TUMOR_peak_102323	chr9	16867916	16868264	+	10.69701	NA	intron (NM_017637, intron 1 of 6)	intron (NM_017637, intron 1 of 6)	2696	NM_017637	54796	Hs.656581	NM_017637	HPRD:12274	BNC2	BSN2	basonuclin 2	protein-coding
19-PTNLD28-TUMOR_peak_25432	chr12	80084927	80085115	+	10.69701	NA	promoter-TSS (NM_002583)	promoter-TSS (NM_002583)	-231	NM_002583	5074	Hs.643130	NM_002583		PAWR	PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
19-PTNLD28-TUMOR_peak_41652	chr17	41747648	41747822	+	10.69635	NA	Intergenic	Intergenic	-8473	NM_001040002	4222	Hs.438	NM_004527	HPRD:02537	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_41039	chr17	32579286	32579471	+	10.69624	NA	Intergenic	Intergenic	-2918	NM_002982	6347	Hs.303649	NM_002982	HPRD:01149	CCL2	GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF	chemokine (C-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_28295	chr13	52377577	52377759	+	10.69624	NA	intron (NM_001270424, intron 1 of 9)	intron (NM_001270424, intron 1 of 9)	630	NM_001031719	79758	Hs.266728	NM_024705	HPRD:07833	DHRS12	SDR40C1	dehydrogenase/reductase (SDR family) member 12	protein-coding
19-PTNLD28-TUMOR_peak_6267	chr1	145153103	145153227	+	10.69624	NA	intron (NM_001277444, intron 20 of 24)	HAL1|LINE|L1	-55948	NM_203458	388677	Hs.655156	NM_203458	HPRD:14833	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_35836	chr16	2714315	2714529	+	10.69529	NA	intron (NR_040023, intron 2 of 2)	HERVK13-int|LTR|ERVK	9018	NR_040023	100507321	Hs.406976	NM_001012731		ERVK13-1	-	endogenous retrovirus group K13, member 1	ncRNA
19-PTNLD28-TUMOR_peak_16219	chr10	128949930	128950100	+	10.69529	NA	intron (NM_001039762, intron 5 of 5)	intron (NM_001039762, intron 5 of 5)	44407	NM_001039762	642938	Hs.613882	NM_001039762	ENSG00000188916	FAM196A	C10orf141	family with sequence similarity 196, member A	protein-coding
19-PTNLD28-TUMOR_peak_20563	chr11	91957789	91958174	+	10.69529	NA	Intergenic	CpG	-127281	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_88223	chr6	70577044	70577457	+	10.69529	NA	intron (NM_001858, intron 1 of 50)	CpG	802	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	collagen, type XIX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_52270	chr2	39750539	39750751	+	10.69529	NA	intron (NR_037875, intron 5 of 5)	L2b|LINE|L2	86088	NR_037875	728730	Hs.655344	NR_037875	ENSG00000231312	LOC728730	-	uncharacterized LOC728730	ncRNA
19-PTNLD28-TUMOR_peak_99381	chr8	86089286	86089515	+	10.69529	NA	promoter-TSS (NM_001951)	promoter-TSS (NM_001951)	-219	NM_001083588	1875	Hs.445758	NM_001951	HPRD:02983	E2F5	E2F-5	E2F transcription factor 5, p130-binding	protein-coding
19-PTNLD28-TUMOR_peak_12748	chr10	30846990	30847157	+	10.69529	NA	Intergenic	Intergenic	71574	NM_183058	119180	Hs.522610	NM_183058	HPRD:14337	LYZL2	-	lysozyme-like 2	protein-coding
19-PTNLD28-TUMOR_peak_57676	chr2	198714786	198714914	+	10.69529	NA	intron (NM_006226, intron 1 of 5)	MIR3|SINE|MIR	45424	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C-like 1	protein-coding
19-PTNLD28-TUMOR_peak_81020	chr5	83017771	83018141	+	10.69529	NA	Intergenic	CpG	-1060	NM_001884	1404	Hs.2799	NM_001884	HPRD:00275	HAPLN1	CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27313	chr12	133533474	133533655	+	10.69529	NA	promoter-TSS (NM_001164715)	promoter-TSS (NM_001164715)	-672	NM_001164715	100289635	Hs.29698	NM_183238	ENSG00000196458	ZNF605	-	zinc finger protein 605	protein-coding
19-PTNLD28-TUMOR_peak_11137	chr1	236272735	236273012	+	10.69529	NA	Intergenic	Intergenic	-32959	NM_003272	7107	Hs.498160	NM_003272	HPRD:06878	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
19-PTNLD28-TUMOR_peak_63373	chr21	36901542	36901670	+	10.69529	NA	intron (NR_073512, intron 1 of 2)	intron (NR_073512, intron 1 of 2)	51456	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_33021	chr15	34806593	34806866	+	10.69529	NA	Intergenic	CpG	13843	NR_036050	100302160		NR_036050		MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
19-PTNLD28-TUMOR_peak_50398	chr19	56049192	56049361	+	10.69529	NA	promoter-TSS (NM_001101401)	promoter-TSS (NM_001101401)	-841	NM_001101401	646643	Hs.532676	NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_59295	chr2	242211289	242211522	+	10.69529	NA	intron (NM_005336, intron 1 of 27)	CpG	841	NM_203346	3069	Hs.471851	NM_005336	HPRD:00813	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
19-PTNLD28-TUMOR_peak_76030	chr4	84050415	84050656	+	10.69529	NA	Intergenic	Intergenic	-14624	NM_001130715	51316	Hs.546392	NM_016619	HPRD:06335	PLAC8	C15|DGIC|onzin	placenta-specific 8	protein-coding
19-PTNLD28-TUMOR_peak_6318	chr1	145477347	145477646	+	10.69512	NA	intron (NM_153713, intron 1 of 5)	intron (NM_153713, intron 1 of 5)	429	NM_153713	128077	Hs.740619	NM_153713	HPRD:14653	LIX1L	-	Lix1 homolog (chicken) like	protein-coding
19-PTNLD28-TUMOR_peak_58518	chr2	220407691	220407838	+	10.69512	NA	promoter-TSS (NM_001195731)	promoter-TSS (NM_001195731)	55	NM_001195731	79586	Hs.516711	NM_024536	HPRD:10829	CHPF	CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
19-PTNLD28-TUMOR_peak_17377	chr11	14912731	14912940	+	10.69275	NA	intron (NM_024514, intron 1 of 4)	MIR|SINE|MIR	916	NM_024514	120227	Hs.371427	NM_024514	HPRD:10569	CYP2R1	-	cytochrome P450, family 2, subfamily R, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_22528	chr12	3210652	3210944	+	10.69275	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	24277	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_46390	chr18	77155796	77156077	+	10.69275	NA	5' UTR (NM_006162, exon 1 of 10)	5' UTR (NM_006162, exon 1 of 10)	164	NM_001278670	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_52340	chr2	42356057	42356438	+	10.69071	NA	Intergenic	Intergenic	-40243	NM_001145076	27436	Hs.713173	NM_019063	HPRD:06310	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
19-PTNLD28-TUMOR_peak_86866	chr6	33590815	33591006	+	10.68718	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	1754	NM_002224	3710	Hs.65758	NM_002224	HPRD:00926	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_24441	chr12	53447335	53447659	+	10.68718	NA	intron (NR_033854, intron 1 of 3)	intron (NR_033854, intron 1 of 3)	725	NR_033854	283335	Hs.657060	NR_033854	ENSG00000257337	LOC283335	-	uncharacterized LOC283335	ncRNA
19-PTNLD28-TUMOR_peak_82244	chr5	133847961	133848099	+	10.68041	NA	Intergenic	Intergenic	5787	NR_105045	101927934	Hs.535775	NR_105045	ENSG00000251169	LOC101927934	-	uncharacterized LOC101927934	ncRNA
19-PTNLD28-TUMOR_peak_70312	chr3	124278779	124278928	+	10.68041	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-24653	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_22532	chr12	3241937	3242148	+	10.67647	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	55521	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_85019	chr6	5033043	5033170	+	10.67647	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-28809	NM_001286132	10799	Hs.511756	NM_006638	HPRD:09361	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_52808	chr2	54683429	54683574	+	10.67647	NA	promoter-TSS (NM_003128)	promoter-TSS (NM_003128)	47	NM_003128	6711	Hs.503178	NM_003128	HPRD:01683	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_2541	chr1	38261173	38261288	+	10.67647	NA	promoter-TSS (NM_152496)	promoter-TSS (NM_152496)	70	NM_152496	149175	Hs.534562	NM_152496	HPRD:08713	MANEAL	-	mannosidase, endo-alpha-like	protein-coding
19-PTNLD28-TUMOR_peak_47160	chr19	10028040	10028198	+	10.67647	NA	intron (NM_058164, intron 1 of 5)	LTR33A|LTR|ERVL	18951	NM_058164	93145	Hs.169743	NM_058164	HPRD:10127	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
19-PTNLD28-TUMOR_peak_68829	chr3	65980834	65981092	+	10.67647	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	43546	NM_015520	9223	Hs.476636	NM_004742	HPRD:04020	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83505	chr5	157478093	157478338	+	10.67566	NA	Intergenic	Intergenic	-192032	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_95930	chr7	142013197	142013508	+	10.67566	NA	Intergenic	Intergenic	-41284	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_61484	chr20	45779410	45779548	+	10.67098	NA	intron (NM_005244, intron 10 of 15)	MLT1J|LTR|ERVL-MaLR	-16130	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
19-PTNLD28-TUMOR_peak_29143	chr13	113622899	113623153	+	10.67098	NA	promoter-TSS (NR_034002)	promoter-TSS (NR_034002)	-74	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_59617	chr20	4198246	4198344	+	10.67098	NA	Intergenic	Intergenic	24558	NR_033917	728228	Hs.636379	NR_033917	ENSG00000230176	LINC01433	-	long intergenic non-protein coding RNA 1433	ncRNA
19-PTNLD28-TUMOR_peak_64959	chr22	29076837	29076989	+	10.67098	NA	Intergenic	MIRb|SINE|MIR	-1060	NM_001145418	23331	Hs.387856	NM_015281	HPRD:10020	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_59552	chr20	3263906	3264012	+	10.67098	NA	intron (NM_001009984, intron 27 of 36)	intron (NM_001009984, intron 27 of 36)	-44072	NM_001174089	83959	Hs.105607	NM_032034	HPRD:15392	SLC4A11	BTR1|CDPD1|CHED2|NABC1|dJ794I6.2	solute carrier family 4, sodium borate transporter, member 11	protein-coding
19-PTNLD28-TUMOR_peak_23945	chr12	46748611	46748868	+	10.67098	NA	Intergenic	Intergenic	17906	NM_018976	54407	Hs.221847	NM_018976	HPRD:05535	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38, member 2	protein-coding
19-PTNLD28-TUMOR_peak_84176	chr5	174905402	174905706	+	10.67098	NA	promoter-TSS (NM_022754)	promoter-TSS (NM_022754)	40	NM_022754	94081	Hs.369440	NM_022754	HPRD:18044	SFXN1	-	sideroflexin 1	protein-coding
19-PTNLD28-TUMOR_peak_39763	chr17	3793420	3793652	+	10.67001	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	501	NM_172206	84254	Hs.8417	NM_032294	HPRD:13000	CAMKK1	CAMKKA	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_91028	chr7	4764318	4764553	+	10.67001	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	42505	NM_001037165	221937	Hs.487393	NM_001037165	HPRD:18750	FOXK1	FOXK1L	forkhead box K1	protein-coding
19-PTNLD28-TUMOR_peak_87410	chr6	41339301	41339410	+	10.66985	NA	Intergenic	CpG	35827	NM_001199510	9436	Hs.194721	NM_004828	HPRD:05168	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_43343	chr17	72770228	72770328	+	10.66985	NA	intron (NM_015654, intron 2 of 6)	intron (NM_015654, intron 2 of 6)	2192	NM_015654	26151	Hs.144058	NM_015654	HPRD:13259	NAT9	EBSP, hNATL	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_76971	chr4	125632718	125632897	+	10.66985	NA	intron (NM_020337, intron 1 of 4)	intron (NM_020337, intron 1 of 4)	1080	NM_001167882	57182	Hs.480694	NM_020337	HPRD:13843	ANKRD50	-	ankyrin repeat domain 50	protein-coding
19-PTNLD28-TUMOR_peak_91140	chr7	6010087	6010411	+	10.66728	NA	promoter-TSS (NM_173565)	promoter-TSS (NM_173565)	65	NM_173565	222967	Hs.442339	NM_173565	HPRD:11249	RSPH10B	-	radial spoke head 10 homolog B (Chlamydomonas)	protein-coding
19-PTNLD28-TUMOR_peak_47675	chr19	14895681	14895864	+	10.66728	NA	Intergenic	Intergenic	-6419	NM_013447	30817	Hs.531619	NM_013447	HPRD:07308	EMR2	CD312	egf-like module containing, mucin-like, hormone receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_39810	chr17	4446880	4447109	+	10.66728	NA	intron (NM_001105538, intron 19 of 26)	intron (NM_001105538, intron 19 of 26)	11687	NM_014520	10514	Hs.22824	NM_014520	HPRD:05349	MYBBP1A	P160|PAP2	MYB binding protein (P160) 1a	protein-coding
19-PTNLD28-TUMOR_peak_22875	chr12	7790806	7790970	+	10.66728	NA	Intergenic	LTR9B|LTR|ERV1	27614	NM_001644	339	Hs.560	NM_001644	HPRD:02531	APOBEC1	APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_44958	chr18	21977142	21977416	+	10.66728	NA	intron (NM_080597, intron 1 of 27)	CpG	554	NM_080597	114876	Hs.370725	NM_018030	HPRD:09472	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein-like 1A	protein-coding
19-PTNLD28-TUMOR_peak_32883	chr15	31684337	31684678	+	10.66706	NA	Intergenic	CpG	65424	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_5867	chr1	117712609	117712817	+	10.66706	NA	intron (NR_045603, intron 2 of 5)	intron (NR_045603, intron 2 of 5)	33745	NM_001253849	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_15879	chr10	119459240	119459560	+	10.66374	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-154821	NR_002791	196047	Hs.312592	NR_002791		EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_44307	chr18	3037467	3037709	+	10.66374	NA	Intergenic	Intergenic	-25643	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_40190	chr17	10048462	10048749	+	10.66374	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	53263	NM_201433	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_91840	chr7	30469945	30470238	+	10.66374	NA	intron (NM_006092, intron 12 of 13)	intron (NM_006092, intron 12 of 13)	39590	NR_108081	100506516		NR_108081		LINC01176	-	long intergenic non-protein coding RNA 1176	ncRNA
19-PTNLD28-TUMOR_peak_100928	chr8	130709497	130709622	+	10.66374	NA	Intergenic	Intergenic	89575	NM_031415	56169	Hs.133244	NM_031415	HPRD:12222	GSDMC	MLZE	gasdermin C	protein-coding
19-PTNLD28-TUMOR_peak_84076	chr5	173134556	173134714	+	10.66374	NA	TTS (NR_108027)	TTS (NR_108027)	38577	NR_108027	101928136	Hs.449267	NR_108027		LINC01484	-	long intergenic non-protein coding RNA 1484	ncRNA
19-PTNLD28-TUMOR_peak_56747	chr2	165642059	165642273	+	10.66374	NA	intron (NM_001278460, intron 2 of 13)	intron (NM_001278460, intron 2 of 13)	-55093	NR_110574	101929633	Hs.570267	NR_110574		LOC101929633	-	uncharacterized LOC101929633	ncRNA
19-PTNLD28-TUMOR_peak_16660	chr11	2449510	2449679	+	10.66374	NA	Intergenic	Intergenic	-5319	NM_014555	29850	Hs.272287	NM_014555	HPRD:16064	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel, subfamily M, member 5	protein-coding
19-PTNLD28-TUMOR_peak_31692	chr14	91783898	91784161	+	10.66374	NA	intron (NM_001080414, intron 13 of 29)	intron (NM_001080414, intron 13 of 29)	-63805	NM_003485	8111	Hs.8882	NM_003485	HPRD:03241	GPR68	GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
19-PTNLD28-TUMOR_peak_38493	chr16	69535934	69536074	+	10.66374	NA	Intergenic	Intergenic	63767	NR_031719	100302119		NR_031719	miRBase:MI0007259	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
19-PTNLD28-TUMOR_peak_31197	chr14	73167170	73167314	+	10.66374	NA	intron (NM_001280543, intron 7 of 10)	intron (NM_001280543, intron 7 of 10)	183714	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_2251	chr1	34391301	34391459	+	10.66374	NA	intron (NM_052896, intron 4 of 69)	L2b|LINE|L2	56823	NR_038372	402779	Hs.666207	NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62320	chr20	56354595	56354731	+	10.66374	NA	Intergenic	L2a|LINE|L2	-68071	NM_199171	56937	Hs.517155	NM_020182	HPRD:09415	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
19-PTNLD28-TUMOR_peak_9771	chr1	206827500	206827768	+	10.66374	NA	Intergenic	Intergenic	18753	NM_001004023	8444	Hs.164267	NM_003582	HPRD:04607	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_10798	chr1	230890676	230890852	+	10.66374	NA	intron (NM_016452, intron 1 of 18)	intron (NM_016452, intron 1 of 18)	7603	NM_016452	10753	Hs.498021	NM_006615	HPRD:05909	CAPN9	GC36|nCL-4	calpain 9	protein-coding
19-PTNLD28-TUMOR_peak_21246	chr11	113434668	113434796	+	10.66374	NA	Intergenic	Intergenic	-88731	NM_000795	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_22059	chr11	128634635	128635053	+	10.66374	NA	intron (NM_001271010, intron 3 of 9)	intron (NM_001271010, intron 3 of 9)	-68926	NR_038908	100507392	Hs.657715	NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_65018	chr22	30112866	30112972	+	10.66374	NA	Intergenic	Intergenic	-3425	NM_182527	164633	Hs.643608	NM_182527	HPRD:12995	CABP7	CALN2	calcium binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_27980	chr13	41837683	41838029	+	10.66374	NA	promoter-TSS (NM_004294)	promoter-TSS (NM_004294)	-143	NM_004294	9617	Hs.382176	NM_004294	HPRD:06855	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translational release factor 1	protein-coding
19-PTNLD28-TUMOR_peak_106097	chr9	128394561	128394786	+	10.66374	NA	intron (NM_001006618, intron 4 of 7)	L2c|LINE|L2	74840	NM_001006619	79109	Hs.495138	NM_024117	HPRD:17464	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_39812	chr17	4466788	4466921	+	10.65994	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2963	NM_001288704	124975	Hs.130749	NM_153338	HPRD:08293	GGT6	-	gamma-glutamyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_68813	chr3	65495376	65495502	+	10.65994	NA	intron (NM_001033057, intron 2 of 22)	L1HS|LINE|L1	-384052	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36561	chr16	16687455	16687563	+	10.65994	NA	Intergenic	Intergenic	214407	NM_001282511	101059953	Hs.636569	NM_001282511		NPIPA8	LCR16a9	nuclear pore complex interacting protein family, member A8	protein-coding
19-PTNLD28-TUMOR_peak_59720	chr20	8412835	8413001	+	10.65994	NA	intron (NM_015192, intron 3 of 31)	MER61A|LTR|ERV1	300006	NM_015192	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_5748	chr1	116047744	116047976	+	10.65994	NA	Intergenic	Intergenic	-136714	NM_001172411	81839	Hs.515130	NM_138959	HPRD:18279	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108318	chrX	49967334	49967493	+	10.65994	NA	Intergenic	Intergenic	-1749	NM_003886	8852	Hs.97633	NM_003886	HPRD:02173	AKAP4	AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82	A kinase (PRKA) anchor protein 4	protein-coding
19-PTNLD28-TUMOR_peak_65715	chr22	42315363	42315605	+	10.65994	NA	Intergenic	Intergenic	-4813	NM_001207020	440829	Hs.526704	NM_001207020		SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
19-PTNLD28-TUMOR_peak_31316	chr14	75670740	75671071	+	10.65994	NA	Intergenic	Intergenic	-27556	NM_006827	10972	Hs.74137	NM_006827	HPRD:12013	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23	transmembrane emp24-like trafficking protein 10 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_105179	chr9	109905310	109905436	+	10.65994	NA	Intergenic	Intergenic	-56657	NR_031752	100313841		NR_031752	miRBase:MI0010637	MIR548Q	-	microRNA 548q	ncRNA
19-PTNLD28-TUMOR_peak_15878	chr10	119444359	119444662	+	10.65994	NA	Intergenic	Intergenic	-139931	NR_002791	196047	Hs.312592	NR_002791		EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_41337	chr17	38177826	38178107	+	10.65994	NA	intron (NR_052017, intron 22 of 24)	intron (NR_052017, intron 22 of 24)	4696	NR_106944	102466757		NR_106944		MIR6884	hsa-mir-6884	microRNA 6884	ncRNA
19-PTNLD28-TUMOR_peak_10774	chr1	230269892	230270001	+	10.65994	NA	intron (NM_004481, intron 1 of 15)	AluY|SINE|Alu	67004	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_42571	chr17	56319702	56319846	+	10.65994	NA	intron (NM_001160102, intron 1 of 10)	intron (NM_001160102, intron 1 of 10)	3987	NM_001160102	4025	Hs.234742	NM_006151	HPRD:11825	LPO	SPO	lactoperoxidase	protein-coding
19-PTNLD28-TUMOR_peak_69064	chr3	73278202	73278415	+	10.65994	NA	Intergenic	Intergenic	167498	NM_018029	55096	Hs.658858	NM_018029	HPRD:07654	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
19-PTNLD28-TUMOR_peak_49648	chr19	48416124	48416252	+	10.65635	NA	promoter-TSS (NR_024220)	promoter-TSS (NR_024220)	-120	NR_024220	100170225	Hs.717052	NR_024220		SNAR-C1	-	small ILF3/NF90-associated RNA C1	snRNA
19-PTNLD28-TUMOR_peak_4788	chr1	90287048	90287251	+	10.65535	NA	promoter-TSS (NM_018103)	promoter-TSS (NM_018103)	-331	NM_018103	55144	Hs.482087	NM_018103	HPRD:11287	LRRC8D	LRRC5	leucine rich repeat containing 8 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_82348	chr5	135393046	135393242	+	10.65470	NA	intron (NM_000358, intron 12 of 16)	intron (NM_000358, intron 12 of 16)	23142	NR_030583	100126299		NR_030583	ENSG00000270123	VTRNA2-1	CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886	vault RNA 2-1	ncRNA
19-PTNLD28-TUMOR_peak_74315	chr4	8159220	8159509	+	10.65011	NA	intron (NM_001130085, intron 1 of 17)	intron (NM_001130085, intron 1 of 17)	1195	NM_001130083	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_45999	chr18	57169518	57170069	+	10.64891	NA	intron (NM_133459, intron 2 of 10)	intron (NM_133459, intron 2 of 10)	-143285	NM_005570	3998	Hs.465295	NM_005570	HPRD:03338	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose-binding, 1	protein-coding
19-PTNLD28-TUMOR_peak_61830	chr20	49192551	49192656	+	10.64891	NA	intron (NM_001278618, intron 4 of 8)	intron (NM_001278618, intron 4 of 8)	-9720	NR_030375	693230		NR_030375	miRBase:MI0003660	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
19-PTNLD28-TUMOR_peak_39144	chr16	85089035	85089615	+	10.64891	NA	intron (NM_001286566, intron 1 of 11)	L3|LINE|CR1	-7493	NM_001286565	9764	Hs.301658	NM_014732	HPRD:17192	KIAA0513	-	KIAA0513	protein-coding
19-PTNLD28-TUMOR_peak_86395	chr6	29701909	29702136	+	10.64891	NA	intron (NR_026972, intron 4 of 5).6	intron (NR_026972, intron 4 of 5).6	10905	NM_001098478	3134	Hs.519972	NM_018950	HPRD:00884	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
19-PTNLD28-TUMOR_peak_75754	chr4	77342111	77342346	+	10.64891	NA	Intergenic	CpG	-13770	NM_001042784	339965	Hs.529680	NM_178555	HPRD:13395	CCDC158	-	coiled-coil domain containing 158	protein-coding
19-PTNLD28-TUMOR_peak_86461	chr6	30367617	30367713	+	10.64891	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	54759	NM_001199121	79897	Hs.183232	NM_024839	HPRD:15275	RPP21	C6orf135|CAT60	ribonuclease P/MRP 21kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_17966	chr11	34089739	34089928	+	10.64891	NA	intron (NM_005898, intron 2 of 18)	MLT1G3|LTR|ERVL-MaLR	16603	NM_203364	4076	Hs.471818	NM_005898	HPRD:03108	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22792	chr12	6741933	6742094	+	10.64885	NA	intron (NM_020400, intron 1 of 1)	intron (NM_020400, intron 1 of 1)	-1198	NM_001142961	57121	Hs.155538	NM_020400	HPRD:09495	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_72747	chr3	183948750	183948882	+	10.64779	NA	intron (NM_138345, intron 2 of 18)	intron (NM_138345, intron 2 of 18)	499	NM_138345	90113	Hs.584997	NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
19-PTNLD28-TUMOR_peak_29285	chr14	20096723	20096834	+	10.64779	NA	Intergenic	L2b|LINE|L2	-76506	NM_001145442	641455	Hs.654289	NM_001145442	ENSG00000187537	POTEM	ACT|P704P|POTE14beta	POTE ankyrin domain family, member M	protein-coding
19-PTNLD28-TUMOR_peak_60766	chr20	34689184	34689380	+	10.64696	NA	intron (NM_001258329, intron 1 of 22)	intron (NM_001258329, intron 1 of 22)	8650	NM_177996	2036	Hs.437422	NM_012156	HPRD:04193	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_59106	chr2	238527234	238527372	+	10.64443	NA	Intergenic	L1ME2|LINE|L1	-8921	NM_001137550	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100875	chr8	129335050	129335318	+	10.64443	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	172822	NR_031613	100302281		NR_031613	miRBase:MI0006341	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
19-PTNLD28-TUMOR_peak_14349	chr10	75647201	75647322	+	10.64290	NA	Intergenic	Intergenic	-12912	NM_172169	818	Hs.523045	NM_001222	HPRD:03672	CAMK2G	CAMK|CAMK-II|CAMKG	calcium/calmodulin-dependent protein kinase II gamma	protein-coding
19-PTNLD28-TUMOR_peak_21326	chr11	115035654	115035811	+	10.64290	NA	Intergenic	MIR3|SINE|MIR	339509	NM_014333	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_14351	chr10	75648333	75648513	+	10.64290	NA	Intergenic	Intergenic	-14074	NM_172169	818	Hs.523045	NM_001222	HPRD:03672	CAMK2G	CAMK|CAMK-II|CAMKG	calcium/calmodulin-dependent protein kinase II gamma	protein-coding
19-PTNLD28-TUMOR_peak_109911	chrX	153150060	153150401	+	10.64078	NA	intron (NM_001278116, intron 1 of 28)	intron (NM_001278116, intron 1 of 28)	1398	NM_001278116	3897	Hs.522818	NM_000425	HPRD:02394	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_106171	chr9	130328970	130329122	+	10.63938	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	2350	NM_022833	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_76433	chr4	103422082	103422592	+	10.63929	NA	promoter-TSS (NM_001165412)	promoter-TSS (NM_001165412)	-149	NM_003998	4790	Hs.618430	NM_003998	HPRD:01238	NFKB1	EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	protein-coding
19-PTNLD28-TUMOR_peak_12029	chr10	12083809	12084024	+	10.63929	NA	intron (NM_080599, intron 1 of 21)	intron (NM_080599, intron 1 of 21)	924	NM_015542	26019	Hs.370689	NM_015542	HPRD:10405	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_14978	chr10	95755450	95755662	+	10.63929	NA	intron (NM_001288989, intron 1 of 32)	intron (NM_001288989, intron 1 of 32)	1810	NM_001288989	51196	Hs.655033	NM_016341	HPRD:07087	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_36803	chr16	22596904	22597099	+	10.63929	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	39982	NR_003676	653786	Hs.564945	NR_003676	ENSG00000257838	LOC653786	-	otoancorin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_47033	chr19	8274688	8274993	+	10.63929	NA	intron (NM_024552, intron 1 of 11)	CpG	623	NM_024552	79603	Hs.515111	NM_024552	HPRD:13962	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
19-PTNLD28-TUMOR_peak_18916	chr11	61641917	61642137	+	10.63929	NA	intron (NM_021727, intron 11 of 11)	L2a|LINE|L2	3723	NR_106804	102465446		NR_106804		MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
19-PTNLD28-TUMOR_peak_11156	chr1	236644491	236644833	+	10.63929	NA	intron (NM_145861, intron 5 of 5)	intron (NM_145861, intron 5 of 5)	-36852	NM_201545	3964	Hs.4082	NM_006499	HPRD:09356	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	lectin, galactoside-binding, soluble, 8	protein-coding
19-PTNLD28-TUMOR_peak_104190	chr9	86323441	86323690	+	10.63805	NA	promoter-TSS (NM_013438)	promoter-TSS (NM_013438)	-397	NM_053067	29979	Hs.9589	NM_013438	HPRD:05440	UBQLN1	DA41|DSK2|PLIC-1|UBQN|XDRP1	ubiquilin 1	protein-coding
19-PTNLD28-TUMOR_peak_45143	chr18	30349614	30349798	+	10.63321	NA	exon (NM_020805, exon 2 of 9)	exon (NM_020805, exon 2 of 9)	3268	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_56670	chr2	162271140	162271350	+	10.63321	NA	Intergenic	CpG	-1375	NM_006593	10716	Hs.210862	NM_006593		TBR1	TBR-1|TES-56	T-box, brain, 1	protein-coding
19-PTNLD28-TUMOR_peak_55921	chr2	135809721	135809939	+	10.63321	NA	promoter-TSS (NM_012233)	promoter-TSS (NM_012233)	-5	NM_012233	22930	Hs.306327	NM_012233	HPRD:16002	RAB3GAP1	P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein subunit 1 (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_43553	chr17	74394199	74394318	+	10.63321	NA	intron (NM_022066, intron 12 of 17)	intron (NM_022066, intron 12 of 17)	12969	NM_001142602	8877	Hs.68061	NM_021972	HPRD:04768	SPHK1	SPHK	sphingosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_46768	chr19	4066823	4066930	+	10.63321	NA	promoter-TSS (NM_015898)	promoter-TSS (NM_015898)	-60	NM_015898	51341	Hs.591384	NM_015898	HPRD:10433	ZBTB7A	FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
19-PTNLD28-TUMOR_peak_63609	chr21	41419989	41420324	+	10.63321	NA	intron (NR_073202, intron 30 of 32)	intron (NR_073202, intron 30 of 32)	164202	NR_039917	100616148		NR_039917		MIR4760	-	microRNA 4760	ncRNA
19-PTNLD28-TUMOR_peak_35636	chr16	691706	692090	+	10.62999	NA	promoter-TSS (NM_138418)	promoter-TSS (NM_138418)	49	NM_138418	84331	Hs.706105	NM_032371	HPRD:17503	FAM195A	C16orf14|c349E10.1	family with sequence similarity 195, member A	protein-coding
19-PTNLD28-TUMOR_peak_41377	chr17	38501735	38502031	+	10.62999	NA	intron (NM_001024809, intron 1 of 7)	intron (NM_001024809, intron 1 of 7)	-2495	NR_110861	101929693	Hs.655717	NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65012	chr22	30017716	30017900	+	10.62999	NA	intron (NM_181831, intron 1 of 14)	L2c|LINE|L2	18263	NM_181832	4771	Hs.187898	NM_000268	HPRD:06980	NF2	ACN|BANF|SCH	neurofibromin 2 (merlin)	protein-coding
19-PTNLD28-TUMOR_peak_90000	chr6	150920952	150921119	+	10.62985	NA	promoter-TSS (NM_001029884)	promoter-TSS (NM_001029884)	36	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_101505	chr8	142737189	142737317	+	10.62985	NA	Intergenic	Intergenic	-219923	NR_102364	389690	Hs.689547	NM_207414	HPRD:13480	MROH5	-	maestro heat-like repeat family member 5	protein-coding
19-PTNLD28-TUMOR_peak_10727	chr1	229390769	229390894	+	10.62985	NA	Intergenic	Intergenic	-15978	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_103399	chr9	65656905	65657093	+	10.62985	NA	Intergenic	CpG	-147389	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_30130	chr14	48802869	48803011	+	10.62985	NA	Intergenic	Intergenic	-538723	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_101528	chr8	143332201	143332396	+	10.62985	NA	intron (NM_145003, intron 12 of 13)	intron (NM_145003, intron 12 of 13)	52581	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
19-PTNLD28-TUMOR_peak_16392	chr10	135132052	135132155	+	10.62985	NA	Intergenic	CpG	-6262	NR_046330	10844	Hs.523370	NM_006659		TUBGCP2	GCP-2|GCP2|Grip103|SPBC97|Spc97p|h103p|hGCP2|hSpc97	tubulin, gamma complex associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_33466	chr15	46636733	46636916	+	10.62985	NA	Intergenic	Intergenic	709886	NM_021199	58472	Hs.511251	NM_021199	HPRD:18102	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_85418	chr6	12315137	12315293	+	10.62911	NA	Intergenic	Intergenic	24686	NM_001955	1906	Hs.511899	NM_001955	HPRD:07030	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
19-PTNLD28-TUMOR_peak_26629	chr12	120556170	120556459	+	10.62911	NA	Intergenic	Intergenic	-1671	NM_006861	11021	Hs.524788	NM_006861	HPRD:05010	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_94549	chr7	102283081	102283537	+	10.62767	NA	promoter-TSS (NM_001114403)	promoter-TSS (NM_001114403)	-71	NM_001114403	100134938	Hs.610255	NM_001114403	ENSG00000267368	UPK3BL	UPLP	uroplakin 3B-like	protein-coding
19-PTNLD28-TUMOR_peak_91117	chr7	5733881	5734035	+	10.62538	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-13866	NR_046834	100874342	Hs.665728	NR_046834		RNF216-IT1	-	RNF216 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49613	chr19	48015502	48015660	+	10.61711	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	2934	NR_038457	8775	Hs.730799	NM_003827	HPRD:04447	NAPA	SNAPA	N-ethylmaleimide-sensitive factor attachment protein, alpha	protein-coding
19-PTNLD28-TUMOR_peak_43809	chr17	77038522	77038665	+	10.61567	NA	intron (NM_198593, intron 1 of 3)	intron (NM_198593, intron 1 of 3)	8212	NM_198593	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2428	chr1	36723115	36723234	+	10.61567	NA	intron (NM_005119, intron 1 of 11)	intron (NM_005119, intron 1 of 11)	33157	NM_005119	9967	Hs.744057	NM_005119	HPRD:07543	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_91124	chr7	5820515	5820639	+	10.61286	NA	intron (NM_207111, intron 1 of 16)	CpG	784	NM_207111	54476	Hs.487458	NM_019011	HPRD:15550	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
19-PTNLD28-TUMOR_peak_75728	chr4	76860994	76861101	+	10.61286	NA	intron (NM_001042402, intron 2 of 8)	intron (NM_001042402, intron 2 of 8)	1119	NM_014435	27163	Hs.437365	NM_014435	HPRD:12122	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
19-PTNLD28-TUMOR_peak_5586	chr1	113007392	113007611	+	10.61286	NA	Intergenic	Intergenic	-1662	NM_004185	7482	Hs.258575	NM_004185		WNT2B	WNT13	wingless-type MMTV integration site family, member 2B	protein-coding
19-PTNLD28-TUMOR_peak_100576	chr8	125152988	125153098	+	10.61286	NA	intron (NR_103547, intron 1 of 4)	AluJr|SINE|Alu	30720	NR_103547	157376	Hs.662360	NM_182525	HPRD:08138	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_7098	chr1	154688549	154688654	+	10.61286	NA	intron (NM_002249, intron 5 of 7)	intron (NM_002249, intron 5 of 7)	-88145	NM_001025107	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_51932	chr2	30387162	30387285	+	10.60874	NA	Intergenic	Intergenic	17473	NM_016061	51646	Hs.515890	NM_016061	HPRD:18312	YPEL5	-	yippee-like 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_106702	chr9	138610633	138610756	+	10.60772	NA	intron (NM_020822, intron 2 of 30)	intron (NM_020822, intron 2 of 30)	16663	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	potassium channel, subfamily T, member 1	protein-coding
19-PTNLD28-TUMOR_peak_94252	chr7	99591969	99592093	+	10.60772	NA	Intergenic	Intergenic	13646	NR_036679	646282	Hs.721816	NR_036679	ENSG00000214313	AZGP1P1	-	alpha-2-glycoprotein 1, zinc-binding pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_8732	chr1	183161091	183161276	+	10.60772	NA	intron (NM_018891, intron 1 of 21)	intron (NM_018891, intron 1 of 21)	6009	NM_018891	3918	Hs.591484	NM_005562	HPRD:01031	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_8746	chr1	183273132	183273263	+	10.60772	NA	intron (NM_015039, intron 1 of 10)	intron (NM_015039, intron 1 of 10)	812	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_69587	chr3	107529634	107529805	+	10.60772	NA	3' UTR (NM_001142568, exon 18 of 18)	3' UTR (NM_001142568, exon 18 of 18)	67196	NR_024276	151658	Hs.159043	NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
19-PTNLD28-TUMOR_peak_85575	chr6	15077325	15077449	+	10.60772	NA	Intergenic	Intergenic	-168819	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_88430	chr6	78175811	78175923	+	10.60772	NA	Intergenic	Intergenic	-2747	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_67124	chr3	23105668	23105868	+	10.60772	NA	Intergenic	MLT2A2|LTR|ERVL	-139016	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_61017	chr20	37850841	37851008	+	10.60772	NA	intron (NR_027124, intron 1 of 3)	intron (NR_027124, intron 1 of 3)	2467	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_77051	chr4	129474077	129474201	+	10.60772	NA	Intergenic	Intergenic	-256639	NM_199320	79960	Hs.12420	NM_024900	HPRD:10151	JADE1	PHF17	jade family PHD finger 1	protein-coding
19-PTNLD28-TUMOR_peak_39020	chr16	82236896	82237052	+	10.60772	NA	Intergenic	LTR16E2|LTR|ERVL	-33145	NM_005792	10200	Hs.344400	NM_005792	HPRD:16111	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
19-PTNLD28-TUMOR_peak_109809	chrX	151154600	151154737	+	10.60772	NA	Intergenic	Intergenic	-11517	NM_004961	2564	Hs.22785	NM_004961	HPRD:02104	GABRE	-	gamma-aminobutyric acid (GABA) A receptor, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_93524	chr7	76357980	76358086	+	10.60772	NA	Intergenic	L1PA3|LINE|L1	-101413	NM_012230	22932	Hs.488877	NM_012230	HPRD:15974	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
19-PTNLD28-TUMOR_peak_23643	chr12	31800217	31800370	+	10.60772	NA	intron (NM_001135864, intron 1 of 3)	intron (NM_001135864, intron 1 of 3)	199	NM_001135864	254013	Hs.740628	NM_173802	HPRD:14666	METTL20	C12orf72	methyltransferase like 20	protein-coding
19-PTNLD28-TUMOR_peak_58087	chr2	208529803	208530018	+	10.60772	NA	Intergenic	AluSz|SINE|Alu	-39937	NM_001127395	151194	Hs.664764	NM_145280	HPRD:14090	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase like 21A	protein-coding
19-PTNLD28-TUMOR_peak_31601	chr14	89467027	89467180	+	10.60772	NA	Intergenic	Intergenic	176606	NM_001288782	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
19-PTNLD28-TUMOR_peak_52610	chr2	47116221	47116393	+	10.60772	NA	Intergenic	Intergenic	26700	NM_139279	90411	Hs.662152	NM_139279	HPRD:09693	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
19-PTNLD28-TUMOR_peak_21998	chr11	127233487	127233627	+	10.60772	NA	Intergenic	L1PA3|LINE|L1	92592	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
19-PTNLD28-TUMOR_peak_99658	chr8	99305960	99306570	+	10.60772	NA	exon (NM_024759, exon 1 of 12)	exon (NM_024759, exon 1 of 12)	356	NM_024759	79815	Hs.309489	NM_024759		NIPAL2	NPAL2	NIPA-like domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_19525	chr11	67471251	67471353	+	10.60772	NA	Intergenic	HERVK11-int|LTR|ERVK	-22617	NM_001031615	222	Hs.87539	NM_000695	HPRD:03559	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family, member B2	protein-coding
19-PTNLD28-TUMOR_peak_11786	chr10	5113929	5114205	+	10.60772	NA	intron (NM_001253908, intron 1 of 8)	MER67A|LTR|ERV1	-22501	NM_001253909	8644	Hs.78183	NM_003739	HPRD:04911	AKR1C3	DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS	aldo-keto reductase family 1, member C3	protein-coding
19-PTNLD28-TUMOR_peak_74183	chr4	6660439	6660763	+	10.60772	NA	Intergenic	CpG	-15220	NR_015433	93622	Hs.6815	NM_138699		LOC93622	-	Morf4 family associated protein 1-like 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86123	chr6	26272590	26272834	+	10.60591	NA	promoter-TSS (NM_003525)	promoter-TSS (NM_003525)	-492	NM_003525	8346	Hs.553506	NM_003525	HPRD:11903	HIST1H2BI	H2B/k|H2BFK	histone cluster 1, H2bi	protein-coding
19-PTNLD28-TUMOR_peak_11494	chr1	246670454	246670705	+	10.60420	NA	promoter-TSS (NM_001167740)	promoter-TSS (NM_001167740)	65	NM_001167740	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_28955	chr13	106686761	106686938	+	10.60420	NA	Intergenic	Intergenic	327670	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_88606	chr6	86204452	86204562	+	10.60420	NA	3' UTR (NM_001204813, exon 8 of 8)	3' UTR (NM_001204813, exon 8 of 8)	45205	NM_002526	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_82499	chr5	138467204	138467517	+	10.60420	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	66705	NM_022464	64374	Hs.483521	NM_022464	HPRD:12150	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_17565	chr11	19377247	19377468	+	10.60420	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	5086	NM_001111018	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_17138	chr11	11079089	11079309	+	10.60420	NA	Intergenic	LTR41|LTR|ERVL	199435	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1266	chr1	20521770	20521918	+	10.60420	NA	Intergenic	Intergenic	-8865	NR_110078	101928017	Hs.550803	NR_110078		UBXN10-AS1	-	UBXN10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_77716	chr4	154884418	154884676	+	10.60420	NA	Intergenic	Intergenic	-174319	NM_003013	6423	Hs.481022	NM_003013	HPRD:16041	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled-related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86974	chr6	34902422	34902553	+	10.60420	NA	intron (NM_015245, intron 1 of 23)	intron (NM_015245, intron 1 of 23)	45449	NM_015245	23294	Hs.656492	NM_015245	HPRD:10610	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_58740	chr2	230138522	230138691	+	10.60420	NA	Intergenic	Intergenic	-2549	NM_001100818	55022	Hs.745038	NM_017933	HPRD:07944	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52360	chr2	43019641	43020103	+	10.60420	NA	promoter-TSS (NM_012205)	promoter-TSS (NM_012205)	-121	NM_012205	23498	Hs.368805	NM_012205	HPRD:05158	HAAO	3-HAO|HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
19-PTNLD28-TUMOR_peak_109826	chrX	152045551	152045736	+	10.60420	NA	Intergenic	Intergenic	-37343	NM_001178106	7739	Hs.16622	NM_007150	HPRD:02306	ZNF185	-	zinc finger protein 185 (LIM domain)	protein-coding
19-PTNLD28-TUMOR_peak_105093	chr9	106995073	106995230	+	10.60420	NA	Intergenic	THE1C|LTR|ERVL-MaLR	138320	NM_001042550	10592	Hs.119023	NM_006444	HPRD:09277	SMC2	CAP-E|CAPE|SMC-2|SMC2L1	structural maintenance of chromosomes 2	protein-coding
19-PTNLD28-TUMOR_peak_91044	chr7	4953766	4953931	+	10.60420	NA	intron (NR_072989, intron 4 of 8)	HAL1b|LINE|L1	-30513	NM_018059	55698	Hs.667336	NM_018059	HPRD:07663	RADIL	RASIP2	Ras association and DIL domains	protein-coding
19-PTNLD28-TUMOR_peak_69114	chr3	75174452	75174578	+	10.60420	NA	Intergenic	L1PA3|LINE|L1	-89112	NR_049831	100846999		NR_049831		MIR4444-2	-	microRNA 4444-2	ncRNA
19-PTNLD28-TUMOR_peak_100968	chr8	131336361	131336503	+	10.60420	NA	intron (NM_018482, intron 3 of 29)	intron (NM_018482, intron 3 of 29)	-27653	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_101364	chr8	140953830	140954047	+	10.60420	NA	intron (NM_031466, intron 19 of 22)	intron (NM_031466, intron 19 of 22)	-238639	NM_001282534	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_75468	chr4	58040025	58040193	+	10.60420	NA	intron (NR_034081, intron 1 of 4)	SVA_D|Other|Other	-63558	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_12947	chr10	35747540	35747676	+	10.60420	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	121806	NM_001282853	219771	Hs.14745	NM_145012	HPRD:10700	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
19-PTNLD28-TUMOR_peak_29047	chr13	110761301	110761476	+	10.60420	NA	Intergenic	Intergenic	198108	NM_001845	1282	Hs.17441	NM_001845	HPRD:00359	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_99249	chr8	75860277	75860481	+	10.60420	NA	Intergenic	L1PA2|LINE|L1	-36329	NM_031461	83690	Hs.436542	NM_031461	HPRD:16756	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51915	chr2	29843827	29844008	+	10.60420	NA	intron (NM_004304, intron 3 of 28)	intron (NM_004304, intron 3 of 28)	300560	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_104927	chr9	101096607	101096720	+	10.60420	NA	intron (NM_005458, intron 13 of 18)	MIRc|SINE|MIR	-78660	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_74508	chr4	10556401	10556575	+	10.60420	NA	intron (NM_052964, intron 8 of 18)	intron (NM_052964, intron 8 of 18)	-97456	NM_053042	85460	Hs.455089	NM_053042	HPRD:13889	ZNF518B	-	zinc finger protein 518B	protein-coding
19-PTNLD28-TUMOR_peak_3378	chr1	48712465	48712623	+	10.60420	NA	intron (NM_001011547, intron 13 of 13)	MIRc|SINE|MIR	24187	NM_001011547	200010	Hs.37890	NM_001011547	HPRD:18060	SLC5A9	SGLT4	solute carrier family 5 (sodium/sugar cotransporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_90670	chr6	170699195	170699325	+	10.60420	NA	intron (NM_001286380, intron 7 of 10)	intron (NM_001286380, intron 7 of 10)	59411	NR_039787	100616430		NR_039787		MIR4644	-	microRNA 4644	ncRNA
19-PTNLD28-TUMOR_peak_42874	chr17	62223831	62224040	+	10.60311	NA	TTS (NR_004380)	TTS (NR_004380)	236	NR_002995	677842	Hs.405444	NR_002995	ENSG00000266402	SNORA76C	ACA62|SNORA76	small nucleolar RNA, H/ACA box 76C	snoRNA
19-PTNLD28-TUMOR_peak_104868	chr9	100297361	100297510	+	10.60309	NA	intron (NM_001166116, intron 2 of 9)	intron (NM_001166116, intron 2 of 9)	33514	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_108286	chrX	49028102	49028510	+	10.60309	NA	5' UTR (NM_002668, exon 1 of 5)	5' UTR (NM_002668, exon 1 of 5)	122	NM_002668	5355	Hs.77422	NM_002668	HPRD:02121	PLP2	A4|A4LSB	proteolipid protein 2 (colonic epithelium-enriched)	protein-coding
19-PTNLD28-TUMOR_peak_80676	chr5	73478999	73479207	+	10.60309	NA	Intergenic	Intergenic	125047	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_23365	chr12	21680767	21681030	+	10.60309	NA	intron (NM_030572, intron 4 of 5)	CpG-5155	1642	NM_030572	80763	Hs.130692	NM_030572		SPX	C12orf39	spexin hormone	protein-coding
19-PTNLD28-TUMOR_peak_5472	chr1	110801354	110801594	+	10.60309	NA	Intergenic	Intergenic	48138	NM_004978	3749	Hs.153521	NM_004978	HPRD:08887	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel, Shaw-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_102199	chr9	13279335	13279824	+	10.60309	NA	promoter-TSS (NM_001261406)	promoter-TSS (NM_001261406)	-16	NM_001261407	8777	Hs.169378	NM_003829	HPRD:09155	MPDZ	HYC2|MUPP1	multiple PDZ domain protein	protein-coding
19-PTNLD28-TUMOR_peak_89638	chr6	138060365	138060575	+	10.60309	NA	promoter-TSS (NR_121618)	promoter-TSS (NR_121618)	-296	NR_121619	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_52491	chr2	44974110	44974326	+	10.60309	NA	intron (NM_024766, intron 8 of 10)	intron (NM_024766, intron 8 of 10)	194428	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	-	SIX3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48755	chr19	36551494	36551598	+	10.60309	NA	intron (NM_173636, intron 3 of 31)	intron (NM_173636, intron 3 of 31)	5763	NM_001083961	284403	Hs.116244	NM_173636	HPRD:10721	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
19-PTNLD28-TUMOR_peak_73102	chr3	188862546	188862694	+	10.60309	NA	Intergenic	L3|LINE|CR1	-27143	NM_198485	285386	Hs.729544	NM_198485	HPRD:13451	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_14964	chr10	95235644	95235914	+	10.60309	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	6295	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_86179	chr6	26689760	26690112	+	10.60309	NA	Intergenic	CpG	-29956	NM_001242799	79692	Hs.126280	NM_024639		ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
19-PTNLD28-TUMOR_peak_79980	chr5	55776552	55776950	+	10.60309	NA	intron (NR_104664, intron 1 of 4)	CpG	845	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_62977	chr21	27290794	27290937	+	10.60309	NA	intron (NM_001136130, intron 12 of 16)	L1PA2|LINE|L1	-182900	NM_001685	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_73560	chr3	195954480	195954924	+	10.60228	NA	intron (NM_152672, intron 4 of 8)	intron (NM_152672, intron 4 of 8)	11319	NM_152672	200931	Hs.630585	NM_152672	HPRD:17810	SLC51A	OSTA|OSTalpha	solute carrier family 51, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_65485	chr22	38619649	38619947	+	10.60228	NA	intron (NM_012264, intron 8 of 8)	intron (NM_012264, intron 8 of 8)	20771	NM_001161573	23764	Hs.517617	NM_012323	HPRD:05343	MAFF	U-MAF|hMafF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F	protein-coding
19-PTNLD28-TUMOR_peak_70549	chr3	127285689	127286051	+	10.60228	NA	Intergenic	Intergenic	8304	NR_106883	102466199		NR_106883		MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
19-PTNLD28-TUMOR_peak_27013	chr12	125244529	125244632	+	10.60228	NA	Intergenic	Intergenic	103939	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_65851	chr22	44587101	44587406	+	10.60228	NA	intron (NM_001137605, intron 7 of 13)	intron (NM_001137605, intron 7 of 13)	10483	NM_022141	64098	Hs.658995	NM_022141	HPRD:16285	PARVG	-	parvin, gamma	protein-coding
19-PTNLD28-TUMOR_peak_16647	chr11	2326679	2327008	+	10.60228	NA	intron (NM_139022, intron 3 of 9)	intron (NM_139022, intron 3 of 9)	3600	NM_139022	10077	Hs.271954	NM_005705	HPRD:04834	TSPAN32	ART1|PHEMX|PHMX|TSSC6	tetraspanin 32	protein-coding
19-PTNLD28-TUMOR_peak_35104	chr15	89164797	89164961	+	10.59954	NA	intron (NM_022767, intron 1 of 3)	CpG	352	NM_022767	64782	Hs.436102	NM_022767	HPRD:08573	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
19-PTNLD28-TUMOR_peak_98896	chr8	58134443	58134690	+	10.59954	NA	intron (NR_038235, intron 6 of 9)	MER50|LTR|ERV1	3731	NR_038235	100507651	Hs.371831	NR_038235	ENSG00000253301	LOC100507651	-	uncharacterized LOC100507651	ncRNA
19-PTNLD28-TUMOR_peak_74154	chr4	6273524	6273730	+	10.59714	NA	intron (NM_001145853, intron 1 of 7)	intron (NM_001145853, intron 1 of 7)	2050	NM_006005	7466	Hs.518602	NM_006005	HPRD:05864	WFS1	CTRCT41|WFRS|WFS|WFSL	Wolfram syndrome 1 (wolframin)	protein-coding
19-PTNLD28-TUMOR_peak_10654	chr1	228747036	228747141	+	10.59362	NA	Intergenic	CpG	-33306	NR_037962	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_95574	chr7	135433545	135433888	+	10.58910	NA	promoter-TSS (NM_205855)	promoter-TSS (NM_205855)	-122	NM_205855	389558	Hs.55200	NM_205855	HPRD:15613	FAM180A	UNQ1940	family with sequence similarity 180, member A	protein-coding
19-PTNLD28-TUMOR_peak_84592	chr5	180600483	180600722	+	10.58888	NA	Intergenic	Intergenic	18306	NR_108031	102577426	Hs.277359	NR_108031		LOC102577426	-	uncharacterized LOC102577426	ncRNA
19-PTNLD28-TUMOR_peak_14475	chr10	79606532	79606700	+	10.58888	NA	intron (NM_004747, intron 5 of 31)	intron (NM_004747, intron 5 of 31)	79732	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_45657	chr18	46517170	46517340	+	10.58888	NA	Intergenic	Intergenic	-40174	NM_001190821	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_50122	chr19	52800449	52801006	+	10.58888	NA	intron (NM_144684, intron 1 of 4)	CpG	305	NM_001297624	147657	Hs.729317	NM_144684	HPRD:15799	ZNF480	-	zinc finger protein 480	protein-coding
19-PTNLD28-TUMOR_peak_103389	chr9	47304465	47304599	+	10.58888	NA	Intergenic	CpG	540741	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_9577	chr1	204944899	204945012	+	10.58888	NA	intron (NM_001005388, intron 15 of 29)	intron (NM_001005388, intron 15 of 29)	31601	NM_001160331	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_61289	chr20	43672833	43673065	+	10.58888	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	56804	NM_002251	3787	Hs.117780	NM_002251	HPRD:04214	KCNS1	KV9.1	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_43614	chr17	75032885	75033150	+	10.58888	NA	Intergenic	Intergenic	-51708	NM_001204408	6397	Hs.464184	NM_003003	HPRD:03295	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_72345	chr3	171678798	171679003	+	10.58888	NA	Intergenic	Intergenic	-60370	NR_046852	100874219	Hs.730556	NR_046852		TMEM212-AS1	-	TMEM212 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36940	chr16	25060333	25060494	+	10.58701	NA	Intergenic	Intergenic	17351	NR_038379	554206	Hs.552959	NR_038379		LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_36477	chr16	15248382	15248509	+	10.58366	NA	TTS (NR_037466)	TTS (NR_037466)	414	NR_037466	100500852		NR_037466	miRBase:MI0016408	MIR3180-4	-	microRNA 3180-4	ncRNA
19-PTNLD28-TUMOR_peak_51817	chr2	28614540	28614717	+	10.58250	NA	intron (NR_103831, intron 1 of 1)	CpG	-1151	NM_005253	2355	Hs.220971	NM_005253		FOSL2	FRA2	FOS-like antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_49770	chr19	49377800	49377932	+	10.58250	NA	exon (NM_014330, exon 2 of 3)	exon (NM_014330, exon 2 of 3)	2217	NM_014330	23645	Hs.631593	NM_014330	HPRD:06572	PPP1R15A	GADD34	protein phosphatase 1, regulatory subunit 15A	protein-coding
19-PTNLD28-TUMOR_peak_3922	chr1	61516198	61516434	+	10.58198	NA	Intergenic	CpG	-26630	NM_001145511	4774	Hs.740757	NM_005595	HPRD:09007	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
19-PTNLD28-TUMOR_peak_59988	chr20	17592103	17592234	+	10.58198	NA	Intergenic	Intergenic	41569	NM_001011546	11034	Hs.304192	NM_006870	HPRD:16446	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin (actin depolymerizing factor)	protein-coding
19-PTNLD28-TUMOR_peak_36415	chr16	14395950	14396241	+	10.58198	NA	Intergenic	CpG	-1729	NR_030177	574455		NR_030177	miRBase:MI0003137	MIR193B	MIRN193B	microRNA 193b	ncRNA
19-PTNLD28-TUMOR_peak_9616	chr1	205318093	205318225	+	10.58198	NA	intron (NM_001271863, intron 2 of 8)	intron (NM_001271863, intron 2 of 8)	7969	NM_018203	55220	Hs.10414	NM_018203	HPRD:07696	KLHDC8A	-	kelch domain containing 8A	protein-coding
19-PTNLD28-TUMOR_peak_42732	chr17	59486990	59487130	+	10.58092	NA	TTS (NM_005994)	TTS (NM_005994)	-2052	NM_203425	388407	Hs.434459	NM_203425	HPRD:14202	C17orf82	-	chromosome 17 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_16482	chr11	506737	507208	+	10.58030	NA	promoter-TSS (NM_203383)	promoter-TSS (NM_203383)	-151	NM_203384	6050	Hs.530687	NM_002939	HPRD:01412	RNH1	RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_55385	chr2	121437920	121438087	+	10.58030	NA	Intergenic	Intergenic	-116864	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_19492	chr11	67188122	67188546	+	10.57991	NA	intron (NM_001166222, intron 8 of 9)	CpG	5185	NM_001166222	57571	Hs.502982	NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_40061	chr17	8057522	8057779	+	10.57838	NA	Intergenic	Intergenic	-1897	NM_002616	5187	Hs.445534	NM_002616	HPRD:03774	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_672	chr1	10271549	10271740	+	10.57457	NA	intron (NM_015074, intron 1 of 46)	intron (NM_015074, intron 1 of 46)	880	NM_015074	23095	Hs.97858	NM_015074	HPRD:05818	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_94640	chr7	104624064	104624210	+	10.57457	NA	non-coding (NR_039981, exon 1 of 1)	non-coding (NR_039981, exon 1 of 1)	7475	NR_039981	100216546	Hs.369356	NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
19-PTNLD28-TUMOR_peak_93340	chr7	74264808	74264925	+	10.57421	NA	intron (NM_173537, intron 1 of 15).2	AluJr|SINE|Alu	3006	NM_173537	84163	Hs.647017	NM_173537	HPRD:16402	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_73508	chr3	195547225	195547472	+	10.56777	NA	Intergenic	Intergenic	-8504	NM_018406	4585	Hs.369646	NM_004532	HPRD:11829	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_57057	chr2	175260850	175261039	+	10.56520	NA	promoter-TSS (NM_004882)	promoter-TSS (NM_004882)	487	NM_024583	79634	Hs.470679	NM_024583	HPRD:18028	SCRN3	SES3	secernin 3	protein-coding
19-PTNLD28-TUMOR_peak_78437	chr4	187760824	187761292	+	10.56520	NA	Intergenic	Intergenic	-116071	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_37636	chr16	47494378	47494492	+	10.56520	NA	promoter-TSS (NM_000293)	promoter-TSS (NM_000293)	580	NM_030790	81533	Hs.42217	NM_030790		ITFG1	TIP	integrin alpha FG-GAP repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52014	chr2	31653071	31653250	+	10.56520	NA	Intergenic	Intergenic	-15549	NM_000379	7498	Hs.250	NM_000379	HPRD:06363	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_46501	chr19	662236	662358	+	10.56520	NA	intron (NM_194460, intron 1 of 8)	CpG	936	NM_194460	55658	Hs.69554	NM_017876	HPRD:11501	RNF126	-	ring finger protein 126	protein-coding
19-PTNLD28-TUMOR_peak_104748	chr9	97713376	97713566	+	10.56520	NA	intron (NM_001193329, intron 6 of 15)	intron (NM_001193329, intron 6 of 15)	-114161	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_76299	chr4	95373869	95374008	+	10.56520	NA	intron (NM_001011513, intron 1 of 12)	intron (NM_001011513, intron 1 of 12)	930	NM_001011515	10611	Hs.480311	NM_006457	HPRD:05799	PDLIM5	ENH|ENH1|LIM	PDZ and LIM domain 5	protein-coding
19-PTNLD28-TUMOR_peak_95663	chr7	137588482	137588618	+	10.56489	NA	intron (NM_194071, intron 7 of 11)	intron (NM_194071, intron 7 of 11)	-49544	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
19-PTNLD28-TUMOR_peak_21890	chr11	125272489	125272588	+	10.56489	NA	intron (NM_022062, intron 7 of 12)	L2b|LINE|L2	93668	NM_005103	9638	Hs.224008	NM_005103	HPRD:09212	FEZ1	-	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
19-PTNLD28-TUMOR_peak_7602	chr1	160370092	160370289	+	10.56489	NA	promoter-TSS (NM_020335)	promoter-TSS (NM_020335)	-174	NM_020335	57216	Hs.99477	NM_020335	HPRD:02758	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
19-PTNLD28-TUMOR_peak_16391	chr10	135127447	135127628	+	10.56489	NA	TTS (NM_145806)	TTS (NM_145806)	-1696	NR_046330	10844	Hs.523370	NM_006659		TUBGCP2	GCP-2|GCP2|Grip103|SPBC97|Spc97p|h103p|hGCP2|hSpc97	tubulin, gamma complex associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_52123	chr2	36934275	36934460	+	10.56489	NA	intron (NM_001177971, intron 1 of 13)	intron (NM_001177971, intron 1 of 13)	10534	NM_001177969	5212	Hs.137415	NM_053276	HPRD:18284	VIT	-	vitrin	protein-coding
19-PTNLD28-TUMOR_peak_2003	chr1	31327086	31327233	+	10.56489	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	54321	NM_014654	9672	Hs.158287	NM_014654		SDC3	SDCN|SYND3	syndecan 3	protein-coding
19-PTNLD28-TUMOR_peak_49922	chr19	50621091	50621254	+	10.56000	NA	promoter-TSS (NR_024228).3	promoter-TSS (NR_024228).3	-75	NR_024229	100170216	Hs.723094	NR_024229		SNAR-A10	-	small ILF3/NF90-associated RNA A10	snRNA
19-PTNLD28-TUMOR_peak_73710	chr3	197902087	197902201	+	10.55849	NA	intron (NM_001145248, intron 6 of 6)	intron (NM_001145248, intron 6 of 6)	22907	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_33254	chr15	41849911	41850201	+	10.55721	NA	Intergenic	Intergenic	-1164	NM_006293	7301	Hs.381282	NM_006293	HPRD:02641	TYRO3	BYK|Dtk|RSE|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_97703	chr8	23710941	23711099	+	10.55721	NA	intron (NM_003155, intron 1 of 3)	intron (NM_003155, intron 1 of 3)	1300	NM_003155	6781	Hs.25590	NM_003155	HPRD:03115	STC1	STC	stanniocalcin 1	protein-coding
19-PTNLD28-TUMOR_peak_108682	chrX	70752688	70752980	+	10.55721	NA	promoter-TSS (NM_181672)	promoter-TSS (NM_181672)	-78	NM_181673	8473	Hs.405410	NM_003605	HPRD:02222	OGT	HRNT1|O-GLCNAC	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
19-PTNLD28-TUMOR_peak_62978	chr21	27291067	27291271	+	10.55721	NA	intron (NM_001136130, intron 12 of 16)	L1PA2|LINE|L1	-183204	NM_001685	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_101391	chr8	141459349	141459549	+	10.55721	NA	intron (NM_031466, intron 2 of 22)	intron (NM_031466, intron 2 of 22)	8412	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_85343	chr6	11364494	11364743	+	10.55721	NA	intron (NR_073131, intron 1 of 9)	MER68|LTR|ERVL	17963	NM_001142393	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_103820	chr9	74909557	74909747	+	10.55721	NA	Intergenic	Intergenic	-10700	NR_110953	100507540	Hs.54957	NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
19-PTNLD28-TUMOR_peak_14083	chr10	71674477	71674633	+	10.55721	NA	intron (NM_080800, intron 16 of 37)	intron (NM_080800, intron 16 of 37)	112911	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_77780	chr4	157215790	157215954	+	10.55721	NA	Intergenic	Intergenic	-340824	NM_001334	1519	Hs.75262	NM_001334	HPRD:02772	CTSO	CTSO1	cathepsin O	protein-coding
19-PTNLD28-TUMOR_peak_44536	chr18	10230250	10230386	+	10.55721	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	184049	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
19-PTNLD28-TUMOR_peak_14948	chr10	95094743	95095056	+	10.55721	NA	intron (NM_133337, intron 40 of 52)	L2c|LINE|L2	147175	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_51153	chr2	11788115	11788237	+	10.55645	NA	Intergenic	Intergenic	22153	NM_012344	23620	Hs.131138	NM_012344	HPRD:05704	NTSR2	NTR2	neurotensin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_45681	chr18	47172248	47172570	+	10.55645	NA	Intergenic	Intergenic	83982	NM_006033	9388	Hs.465102	NM_006033	HPRD:04730	LIPG	EDL|EL|PRO719	lipase, endothelial	protein-coding
19-PTNLD28-TUMOR_peak_30995	chr14	69391198	69391408	+	10.55645	NA	intron (NM_001102, intron 2 of 20)	L2c|LINE|L2	54780	NM_001130004	87	Hs.509765	NM_001102	HPRD:00020	ACTN1	BDPLT15	actinin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_42277	chr17	48836544	48836648	+	10.55645	NA	Intergenic	Intergenic	8280	NR_073199	55018	Hs.389460	NM_017928	HPRD:07942	LINC00483	C17orf73	long intergenic non-protein coding RNA 483	ncRNA
19-PTNLD28-TUMOR_peak_36338	chr16	12120970	12121239	+	10.55645	NA	intron (NM_032167, intron 3 of 20)	intron (NM_032167, intron 3 of 20)	50502	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_41005	chr17	31454871	31455060	+	10.55645	NA	intron (NM_001094, intron 1 of 9)	L2c|LINE|L2	136083	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_1090	chr1	16833124	16833283	+	10.55645	NA	Intergenic	LTR4|LTR|ERV1	-14007	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	ciliary rootlet coiled-coil, rootletin pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_54062	chr2	90190735	90190888	+	10.55645	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	1078927	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_69696	chr3	110738006	110738171	+	10.55645	NA	Intergenic	L1PA2|LINE|L1	50718	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_101440	chr8	142106609	142106871	+	10.55645	NA	Intergenic	Intergenic	-31980	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_90248	chr6	158244162	158244340	+	10.55645	NA	promoter-TSS (NM_016224)	promoter-TSS (NM_016224)	48	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_59379	chr20	335236	335376	+	10.55645	NA	3' UTR (NM_024958, exon 4 of 4)	3' UTR (NM_024958, exon 4 of 4)	7936	NM_024958	80023	Hs.416024	NM_024958	HPRD:12791	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
19-PTNLD28-TUMOR_peak_57762	chr2	201590348	201590507	+	10.55645	NA	intron (NR_001557, intron 3 of 30)	intron (NR_001557, intron 3 of 30)	9473	NR_037886	100507140	Hs.382116	NR_037886	ENSG00000237166	LOC100507140	-	uncharacterized LOC100507140	ncRNA
19-PTNLD28-TUMOR_peak_24334	chr12	52624765	52624932	+	10.55629	NA	Intergenic	Intergenic	-2106	NM_005556	3855	Hs.411501	NM_005556	HPRD:01014	KRT7	CK7|K2C7|K7|SCL	keratin 7	protein-coding
19-PTNLD28-TUMOR_peak_42024	chr17	46103951	46104181	+	10.55629	NA	intron (NM_016429, intron 8 of 8)	intron (NM_016429, intron 8 of 8)	10547	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	ncRNA
19-PTNLD28-TUMOR_peak_1054	chr1	16466185	16466304	+	10.55484	NA	intron (NM_004431, intron 3 of 16)	intron (NM_004431, intron 3 of 16)	16338	NM_004431	1969	Hs.171596	NM_004431	HPRD:01494	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
19-PTNLD28-TUMOR_peak_36794	chr16	22449134	22449432	+	10.55476	NA	promoter-TSS (NR_027460)	promoter-TSS (NR_027460)	-247	NR_027460	100131998	Hs.709576	NR_027460		RRN3P3	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_85265	chr6	10318177	10318367	+	10.55450	NA	Intergenic	L2c|LINE|L2	-94279	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34518	chr15	75160439	75160669	+	10.55157	NA	intron (NM_005697, intron 1 of 8)	intron (NM_005697, intron 1 of 8)	5116	NM_005697	10066	Hs.458917	NM_005697		SCAMP2	-	secretory carrier membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_61113	chr20	39801911	39802025	+	10.55157	NA	intron (NM_182811, intron 27 of 31)	intron (NM_182811, intron 27 of 31)	4305	NR_106931	102466912		NR_106931		MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
19-PTNLD28-TUMOR_peak_16426	chr10	135513542	135513638	+	10.55157	NA	Intergenic	LTR10C|LTR|ERV1	-73291	NM_001080998	441581	Hs.690471	NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_32304	chr14	105330624	105330823	+	10.55157	NA	promoter-TSS (NM_015005)	promoter-TSS (NM_015005)	-927	NM_001112726	283638	Hs.533721	NM_015005	HPRD:12388	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_106866	chr9	140444811	140444989	+	10.55106	NA	5' UTR (NM_001098537, exon 1 of 35)	5' UTR (NM_001098537, exon 1 of 35)	121	NM_152286	375775	Hs.294147	NM_152286	HPRD:12933	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin-like phospholipase domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_17058	chr11	9781289	9781524	+	10.54810	NA	promoter-TSS (NR_033972)	promoter-TSS (NR_033972)	-326	NR_033972	440028	Hs.677541	NR_033972	ENSG00000245522	LOC440028	-	uncharacterized LOC440028	ncRNA
19-PTNLD28-TUMOR_peak_29426	chr14	22801606	22801802	+	10.54810	NA	Intergenic	Intergenic	256439	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_73969	chr4	3338821	3339069	+	10.54810	NA	intron (NM_198229, intron 2 of 17)	L1MB3|LINE|L1	23071	NM_002926	6002	Hs.527061	NM_002926	HPRD:03943	RGS12	-	regulator of G-protein signaling 12	protein-coding
19-PTNLD28-TUMOR_peak_24834	chr12	58730846	58731025	+	10.54810	NA	Intergenic	L2b|LINE|L2	395490	NM_033276	91419	Hs.61188	NM_033276	HPRD:17256	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11383	chr1	244238175	244238487	+	10.54810	NA	Intergenic	Intergenic	21824	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_108167	chrX	47145048	47145167	+	10.54810	NA	Intergenic	LTR19B|LTR|ERV1	52793	NM_004651	8237	Hs.171501	NM_004651	HPRD:02081	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_77103	chr4	135122518	135122703	+	10.54810	NA	intron (NM_001114734, intron 1 of 1)	intron (NM_001114734, intron 1 of 1)	293	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_17016	chr11	8999139	8999475	+	10.54810	NA	Intergenic	SVA_D|Other|Other	-12749	NM_001286095	56674	Hs.501853	NM_020644	HPRD:12603	TMEM9B	C11orf15	TMEM9 domain family, member B	protein-coding
19-PTNLD28-TUMOR_peak_66239	chr3	4557696	4557829	+	10.54810	NA	intron (NM_001168272, intron 2 of 60)	intron (NM_001168272, intron 2 of 60)	22730	NM_002222	3708	Hs.567295	NM_002222	HPRD:00925	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_9572	chr1	204863829	204864031	+	10.54810	NA	intron (NM_001005388, intron 1 of 29)	intron (NM_001005388, intron 1 of 29)	-49424	NM_001160331	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_83170	chr5	149492931	149493077	+	10.54810	NA	promoter-TSS (NM_005211)	promoter-TSS (NM_005211)	-69	NM_005211	1436	Hs.586219	NM_005211	HPRD:01269	CSF1R	C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_32813	chr15	30538006	30538129	+	10.54810	NA	Intergenic	L1PA3|LINE|L1	49828	NR_026771	26082	Hs.652128	NR_026771	ENSG00000225930	DKFZP434L187	-	uncharacterized LOC26082	ncRNA
19-PTNLD28-TUMOR_peak_829	chr1	12217928	12218055	+	10.54810	NA	Intergenic	L1ME5|LINE|L1	-9009	NR_107000	102465836		NR_107000		MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
19-PTNLD28-TUMOR_peak_39445	chr16	89400235	89400373	+	10.54810	NA	intron (NM_001256182, intron 3 of 13)	intron (NM_001256182, intron 3 of 13)	12763	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
19-PTNLD28-TUMOR_peak_86208	chr6	27125260	27125454	+	10.54810	NA	Intergenic	Intergenic	9952	NR_036096	100422934		NR_036096	miRBase:MI0014167	MIR3143	-	microRNA 3143	ncRNA
19-PTNLD28-TUMOR_peak_18283	chr11	44932945	44933111	+	10.54571	NA	intron (NM_130783, intron 4 of 8)	MamRep564|Unknown|Unknown	38731	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_53193	chr2	66706015	66706162	+	10.54571	NA	intron (NM_002398, intron 7 of 12)	intron (NM_002398, intron 7 of 12)	43556	NM_002398	4211	Hs.526754	NM_002398	HPRD:03442	MEIS1	-	Meis homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_99285	chr8	80695810	80696592	+	10.54571	NA	intron (NR_125410, intron 3 of 3)	CpG	15824	NR_125410	101927067	Hs.144030	NR_125410	ENSG00000272138	LOC101927067	-	uncharacterized LOC101927067	ncRNA
19-PTNLD28-TUMOR_peak_4883	chr1	93324499	93324659	+	10.54571	NA	intron (NM_001252269, intron 1 of 3)	intron (NM_001252269, intron 1 of 3)	18128	NM_001252271	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_76592	chr4	111084974	111085104	+	10.54571	NA	intron (NM_001130721, intron 2 of 4)	intron (NM_001130721, intron 2 of 4)	34732	NM_001130721	79071	Hs.412939	NM_024090	HPRD:13269	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
19-PTNLD28-TUMOR_peak_7418	chr1	157550124	157550524	+	10.54571	NA	intron (NM_031282, intron 7 of 11)	intron (NM_031282, intron 7 of 11)	17546	NM_031282	83417	Hs.120260	NM_031282	HPRD:16168	FCRL4	CD307d|FCRH4|IGFP2|IRTA1	Fc receptor-like 4	protein-coding
19-PTNLD28-TUMOR_peak_95631	chr7	137109617	137109780	+	10.54571	NA	intron (NM_004717, intron 29 of 33)	L1PA3|LINE|L1	-81152	NM_002825	5764	Hs.371249	NM_002825	HPRD:01199	PTN	HARP|HBGF8|HBNF|NEGF1	pleiotrophin	protein-coding
19-PTNLD28-TUMOR_peak_84235	chr5	175860177	175860362	+	10.54571	NA	Intergenic	SVA_D|Other|Other	-15087	NM_014613	23197	Hs.484242	NM_014613	HPRD:16870	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
19-PTNLD28-TUMOR_peak_45313	chr18	36520853	36521135	+	10.54571	NA	Intergenic	Intergenic	-735691	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_4138	chr1	66153494	66153692	+	10.54571	NA	Intergenic	Intergenic	-104600	NM_001297440	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_63197	chr21	33904012	33904132	+	10.54571	NA	Intergenic	AluSx3|SINE|Alu	53773	NM_144659	140290	Hs.728804	NM_018277		TCP10L	C21orf77|TCP10A-2	t-complex 10-like	protein-coding
19-PTNLD28-TUMOR_peak_13702	chr10	57659443	57659619	+	10.54571	NA	Intergenic	L1PA3|LINE|L1	300781	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
19-PTNLD28-TUMOR_peak_43899	chr17	78511651	78511806	+	10.54571	NA	Intergenic	SVA_D|Other|Other	-6897	NM_020761	57521	Hs.133044	NM_020761	HPRD:06184	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR, complex 1	protein-coding
19-PTNLD28-TUMOR_peak_108016	chrX	40824017	40824162	+	10.54571	NA	Intergenic	Intergenic	-120799	NM_001039590	8239	Hs.77578	NM_004652	HPRD:02091	USP9X	DFFRX|FAF|FAM|MRX99	ubiquitin specific peptidase 9, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_39949	chr17	7124293	7124458	+	10.54533	NA	exon (NM_000018, exon 6 of 20)	exon (NM_000018, exon 6 of 20)	-1006	NM_001365	1742	Hs.463928	NM_001365	HPRD:04199	DLG4	PSD95|SAP-90|SAP90	discs, large homolog 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_55287	chr2	120040831	120040984	+	10.54533	NA	Intergenic	Intergenic	59523	NM_018234	55240	Hs.647822	NM_018234	HPRD:10285	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2	STEAP family member 3, metalloreductase	protein-coding
19-PTNLD28-TUMOR_peak_19148	chr11	64125454	64125642	+	10.53671	NA	TTS (NM_032251)	TTS (NM_032251)	-1077	NM_001006944	8986	Hs.105584	NM_003942	HPRD:04677	RPS6KA4	MSK2|RSK-B	ribosomal protein S6 kinase, 90kDa, polypeptide 4	protein-coding
19-PTNLD28-TUMOR_peak_17213	chr11	12148245	12148440	+	10.53187	NA	intron (NM_001282668, intron 1 of 4)	intron (NM_001282668, intron 1 of 4)	-11595	NM_001282665	9645	Hs.501928	NM_014632	HPRD:10085	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_77281	chr4	141348282	141348651	+	10.53187	NA	intron (NM_001130675, intron 1 of 15)	CpG	349	NM_001130675	1047	Hs.86368	NM_004362	HPRD:03513	CLGN	-	calmegin	protein-coding
19-PTNLD28-TUMOR_peak_41413	chr17	39072001	39072233	+	10.53187	NA	Intergenic	Intergenic	21778	NM_001282433	25984	Hs.9029	NM_015515	HPRD:05863	KRT23	CK23|HAIK1|K23	keratin 23 (histone deacetylase inducible)	protein-coding
19-PTNLD28-TUMOR_peak_7739	chr1	161994084	161994301	+	10.53187	NA	promoter-TSS (NM_001297713)	promoter-TSS (NM_001297713)	63	NM_001297713	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_449	chr1	7551935	7552100	+	10.53187	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-279312	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_23911	chr12	45662807	45663102	+	10.53187	NA	intron (NM_001142679, intron 1 of 19)	intron (NM_001142679, intron 1 of 19)	-23512	NM_001142678	196527	Hs.505339	NM_001025356	HPRD:18746	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
19-PTNLD28-TUMOR_peak_91199	chr7	6793644	6793902	+	10.53187	NA	promoter-TSS (NM_173565).2	promoter-TSS (NM_173565).2	33	NM_001099697	728194	Hs.710326	NM_001099697	ENSG00000169402	RSPH10B2	-	radial spoke head 10 homolog B2 (Chlamydomonas)	protein-coding
19-PTNLD28-TUMOR_peak_95261	chr7	129794506	129794661	+	10.52997	NA	Intergenic	Intergenic	50755	NM_032842	84928	Hs.267245	NM_032842	HPRD:07871	TMEM209	NET31	transmembrane protein 209	protein-coding
19-PTNLD28-TUMOR_peak_82554	chr5	139056185	139056299	+	10.52997	NA	intron (NM_016463, intron 1 of 2)	intron (NM_016463, intron 1 of 2)	27941	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_96372	chr7	151011078	151011235	+	10.52831	NA	Intergenic	Intergenic	-27691	NM_016118	51667	Hs.647082	NM_016118	HPRD:07450	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin-like proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_289	chr1	3540917	3541055	+	10.52831	NA	promoter-TSS (NM_182752)	promoter-TSS (NM_182752)	-570	NM_182752	127262	Hs.20529	NM_182752	HPRD:14037	TPRG1L	FAM79A|h-mover|mover	tumor protein p63 regulated 1-like	protein-coding
19-PTNLD28-TUMOR_peak_9647	chr1	205498015	205498346	+	10.52831	NA	exon (NM_212502, exon 11 of 16)	exon (NM_212502, exon 11 of 16)	24496	NM_002596	5129	Hs.445402	NM_002596	HPRD:01354	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin-dependent kinase 18	protein-coding
19-PTNLD28-TUMOR_peak_50189	chr19	53661014	53661125	+	10.52831	NA	intron (NM_032584, intron 1 of 4)	intron (NM_032584, intron 1 of 4)	1244	NM_001172674	84671	Hs.467239	NM_032584	HPRD:15783	ZNF347	ZNF1111	zinc finger protein 347	protein-coding
19-PTNLD28-TUMOR_peak_96475	chr7	152237726	152238003	+	10.52831	NA	Intergenic	LTR47A|LTR|ERVL	76655	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
19-PTNLD28-TUMOR_peak_12441	chr10	24553402	24553559	+	10.52831	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	-11134	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_77187	chr4	140374282	140374462	+	10.52703	NA	promoter-TSS (NM_031296)	promoter-TSS (NM_031296)	-589	NM_031296	83452	Hs.591679	NM_031296	HPRD:05808	RAB33B	SMC2	RAB33B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_82537	chr5	139015466	139015641	+	10.52414	NA	Intergenic	Intergenic	-12748	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_29567	chr14	24657469	24657661	+	10.52298	NA	TTS (NM_006405)	TTS (NM_006405)	559	NM_024658	79711	Hs.411865	NM_024658	HPRD:07022	IPO4	Imp4	importin 4	protein-coding
19-PTNLD28-TUMOR_peak_63702	chr21	43203689	43203996	+	10.52298	NA	Intergenic	LTR3B|LTR|ERVK	-16593	NM_020639	54101	Hs.517310	NM_020639	HPRD:10419	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_55723	chr2	131578133	131578293	+	10.52298	NA	Intergenic	Intergenic	64349	NM_001105195	205147	Hs.369289	NM_152698	HPRD:08241	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
19-PTNLD28-TUMOR_peak_27504	chr13	25085391	25085523	+	10.52298	NA	intron (NM_006437, intron 1 of 33)	intron (NM_006437, intron 1 of 33)	1491	NM_006437	143	Hs.744855	NM_006437	HPRD:09598	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_1415	chr1	23011788	23012006	+	10.52298	NA	Intergenic	Intergenic	-25434	NM_004442	2048	Hs.523329	NM_004442	HPRD:02997	EPHB2	CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
19-PTNLD28-TUMOR_peak_28611	chr13	80917053	80917209	+	10.52009	NA	Intergenic	Intergenic	-2045	NM_005842	10253	Hs.18676	NM_005842	HPRD:03916	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_48648	chr19	35609230	35609448	+	10.52009	NA	intron (NM_001136007, intron 3 of 10)	(CAGGG)n|Simple_repeat|Simple_repeat	2607	NM_021910	5349	Hs.301350	NM_005971	HPRD:05410	FXYD3	MAT8|PLML	FXYD domain containing ion transport regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_2305	chr1	35206236	35206341	+	10.51207	NA	Intergenic	Intergenic	-14360	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_27061	chr12	126170604	126170886	+	10.51207	NA	Intergenic	Intergenic	63747	NM_001286219	114795	Hs.524838	NM_052907		TMEM132B	-	transmembrane protein 132B	protein-coding
19-PTNLD28-TUMOR_peak_64314	chr22	18945797	18945903	+	10.51207	NA	Intergenic	Intergenic	-12161	NR_045121	26220	Hs.646438	NR_002733		DGCR5	LINC00037|NCRNA00037	DiGeorge syndrome critical region gene 5 (non-protein coding)	pseudo
19-PTNLD28-TUMOR_peak_44215	chr18	535826	535930	+	10.51207	NA	Intergenic	L1HS|LINE|L1	-35149	NM_130386	81035	Hs.464422	NM_030781	HPRD:06358	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
19-PTNLD28-TUMOR_peak_69374	chr3	98449210	98449379	+	10.51207	NA	intron (NR_046683, intron 1 of 4)	intron (NR_046683, intron 1 of 4)	-1786	NM_001271146	10402	Hs.148716	NM_006100	HPRD:06195	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_110062	chrX	155243356	155243475	+	10.51207	NA	Intergenic	MIRb|SINE|MIR	14433	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16	pseudo
19-PTNLD28-TUMOR_peak_82495	chr5	138350601	138350753	+	10.51207	NA	intron (NM_022464, intron 7 of 9)	intron (NM_022464, intron 7 of 9)	-139620	NM_015564	26045	Hs.656653	NM_015564	HPRD:17454	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_59698	chr20	6973746	6973979	+	10.51207	NA	Intergenic	Intergenic	225117	NM_001200	650	Hs.73853	NM_001200	HPRD:00206	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
19-PTNLD28-TUMOR_peak_106718	chr9	138983509	138983680	+	10.51207	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	3537	NM_144653	138151	Hs.112895	NM_144653	HPRD:09831	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2, BEN and BTB (POZ) domain containing	protein-coding
19-PTNLD28-TUMOR_peak_73627	chr3	196815251	196815545	+	10.51207	NA	intron (NM_001098424, intron 16 of 25)	HAL1|LINE|L1	-58711	NM_005929	4241	Hs.184727	NM_005929	HPRD:01122	MFI2	CD228|MAP97|MTF1	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
19-PTNLD28-TUMOR_peak_70560	chr3	127371068	127371252	+	10.51207	NA	intron (NM_015720, intron 2 of 7)	intron (NM_015720, intron 2 of 7)	-20621	NM_032548	80325	Hs.107812	NM_032548	HPRD:10513	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_110391	chrY	59346362	59346481	+	10.51207	NA	Intergenic	MIRb|SINE|MIR	14433	NR_110561	727856	Hs.740212	NR_110561		DDX11L16	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16	pseudo
19-PTNLD28-TUMOR_peak_36774	chr16	22173728	22173883	+	10.51207	NA	Intergenic	CpG	-43787	NM_013302	29904	Hs.498892	NM_013302		EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding
19-PTNLD28-TUMOR_peak_47791	chr19	16271741	16271923	+	10.51207	NA	TTS (NM_054113)	TTS (NM_054113)	12504	NM_054113	117286	Hs.255432	NM_054113	HPRD:16713	CIB3	KIP3	calcium and integrin binding family member 3	protein-coding
19-PTNLD28-TUMOR_peak_47290	chr19	11155212	11155396	+	10.50899	NA	intron (NM_001128846, intron 28 of 32)	L1ME3|LINE|L1	-44734	NM_001195799	3949	Hs.213289	NM_000527	HPRD:06091	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding
19-PTNLD28-TUMOR_peak_6393	chr1	146395302	146395427	+	10.50899	NA	exon (NM_001278141, exon 7 of 37)	exon (NM_001278141, exon 7 of 37)	21507	NM_001278141	149013	Hs.666981	NM_001278141	ENSG00000186275	NBPF12	COAS1|KIAA1245	neuroblastoma breakpoint family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_24160	chr12	50235844	50235977	+	10.50899	NA	TTS (NR_027500)	TTS (NR_027500)	1002	NM_181708	144233	Hs.142736	NM_181708		BCDIN3D	-	BCDIN3 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_82778	chr5	141250553	141250702	+	10.50759	NA	intron (NM_032420, intron 1 of 4)	intron (NM_032420, intron 1 of 4)	-1435	NM_001278613	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_106747	chr9	139379077	139379284	+	10.50759	NA	promoter-TSS (NM_001276418)	promoter-TSS (NM_001276418)	-969	NM_001276418	9919	Hs.522500	NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_63400	chr21	37528003	37528269	+	10.50759	NA	intron (NR_038892, intron 1 of 3)	intron (NR_038892, intron 1 of 3)	470	NR_038892	100506428	Hs.651214	NR_038892	ENSG00000236830	CBR3-AS1	PlncRNA-1	CBR3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37149	chr16	29685588	29685849	+	10.50745	NA	Intergenic	L2c|LINE|L2	-4723	NM_014298	23475	Hs.513484	NM_014298		QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_38275	chr16	66982326	66982480	+	10.50745	NA	Intergenic	Intergenic	-12729	NM_001185177	23491	Hs.268700	NM_012122	HPRD:07014	CES3	ES31	carboxylesterase 3	protein-coding
19-PTNLD28-TUMOR_peak_106334	chr9	131929363	131929513	+	10.50745	NA	Intergenic	Intergenic	11102	NM_203434	389792	Hs.529857	NM_203434	HPRD:17128	IER5L	bA247A12.2	immediate early response 5-like	protein-coding
19-PTNLD28-TUMOR_peak_39444	chr16	89396641	89396823	+	10.50745	NA	intron (NM_001256182, intron 3 of 13)	intron (NM_001256182, intron 3 of 13)	9191	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
19-PTNLD28-TUMOR_peak_53568	chr2	74725646	74725857	+	10.50745	NA	intron (NM_001009812, intron 1 of 1)	CpG	934	NM_001282430	85474	Hs.516124	NM_001009812	HPRD:16235	LBX2	-	ladybird homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_91198	chr7	6769900	6770008	+	10.50745	NA	Intergenic	CpG	-4982	NR_002217	441194	Hs.715590	NR_002217	ENSG00000187953	PMS2CL	PMS2P13	PMS2 C-terminal like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_24092	chr12	49319215	49319414	+	10.50745	NA	promoter-TSS (NM_016594)	promoter-TSS (NM_016594)	16	NM_001143782	51303	Hs.655103	NM_016594	HPRD:11170	FKBP11	FKBP19	FK506 binding protein 11, 19 kDa	protein-coding
19-PTNLD28-TUMOR_peak_11099	chr1	235799344	235799519	+	10.50745	NA	intron (NM_001098721, intron 1 of 3)	LTR81A|LTR|Gypsy	13862	NM_001098722	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_79316	chr5	31886550	31886693	+	10.50559	NA	intron (NM_178140, intron 1 of 23)	intron (NM_178140, intron 1 of 23)	49644	NR_036241	100422874		NR_036241	miRBase:MI0015887	MIR4279	-	microRNA 4279	ncRNA
19-PTNLD28-TUMOR_peak_89415	chr6	128812892	128813051	+	10.50559	NA	intron (NM_001291983, intron 1 of 18)	intron (NM_001291983, intron 1 of 18)	28848	NM_001291983	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_58027	chr2	207076566	207076668	+	10.50559	NA	intron (NR_104359, intron 1 of 5)	AluJo|SINE|Alu	1735	NM_001261455	2825	Hs.184907	NM_005279	HPRD:02585	GPR1	-	G protein-coupled receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_48409	chr19	30067679	30067829	+	10.50559	NA	Intergenic	Intergenic	-29416	NM_006627	10775	Hs.412870	NM_006627		POP4	RPP29	processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_63870	chr21	45017038	45017149	+	10.50559	NA	intron (NM_007031, intron 7 of 8)	L1MEb|LINE|L1	12777	NR_106718	102464825		NR_106718		MIR6070	hsa-mir-6070	microRNA 6070	ncRNA
19-PTNLD28-TUMOR_peak_84740	chr6	1625131	1625273	+	10.50559	NA	intron (NM_001500, intron 9 of 10)	CpG-21623	14521	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_82390	chr5	136528239	136528429	+	10.50559	NA	intron (NM_004598, intron 3 of 10)	L2|LINE|L2	306684	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_55509	chr2	125165828	125166077	+	10.50559	NA	intron (NM_130773, intron 3 of 23)	L1PA2|LINE|L1	383088	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_41362	chr17	38358165	38358356	+	10.50559	NA	Intergenic	Intergenic	8411	NR_106927	102465523		NR_106927		MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
19-PTNLD28-TUMOR_peak_45535	chr18	44786864	44786965	+	10.50559	NA	Intergenic	Intergenic	-11360	NM_001278063	652991	Hs.585834	NM_001037802	ENSG00000215474	SKOR2	CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_92075	chr7	38398676	38398899	+	10.50559	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	17609	NR_040085	100506776	Hs.173034	NR_040085		TRG-AS1	-	T cell receptor gamma locus antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_91933	chr7	33084623	33084925	+	10.50559	NA	intron (NM_001002009, intron 1 of 9)	intron (NM_001002009, intron 1 of 9)	-3997	NM_001166118	51251	Hs.487933	NM_016489	HPRD:05871	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
19-PTNLD28-TUMOR_peak_4233	chr1	68225495	68225627	+	10.50559	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	-72410	NR_040077	100289178	Hs.677603	NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_84154	chr5	174220872	174220968	+	10.50559	NA	Intergenic	Intergenic	42183	NR_039777	100616202		NR_039777	miRBase:MI0017261	MIR4634	-	microRNA 4634	ncRNA
19-PTNLD28-TUMOR_peak_17608	chr11	19981525	19981656	+	10.50559	NA	intron (NM_182964, intron 10 of 37)	intron (NM_182964, intron 10 of 37)	-62512	NM_001111019	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_50436	chr19	56333935	56334038	+	10.50559	NA	intron (NM_145007, intron 3 of 11)	L1PA2|LINE|L1	9474	NM_001297743	204801	Hs.375039	NM_145007	HPRD:10110	NLRP11	CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7	NLR family, pyrin domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_51665	chr2	26624669	26624848	+	10.50559	NA	promoter-TSS (NM_145038)	promoter-TSS (NM_145038)	-26	NM_145038	92749	Hs.393714	NM_145038	HPRD:11312	DRC1	C2orf39|CCDC164|CILD21	dynein regulatory complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_85164	chr6	7432385	7432627	+	10.50559	NA	Intergenic	Intergenic	29626	NM_153005	83732	Hs.437474	NM_031480	HPRD:17978	RIOK1	AD034|RRP10|bA288G3.1	RIO kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_55333	chr2	121049051	121049206	+	10.50559	NA	intron (NM_002881, intron 4 of 4)	intron (NM_002881, intron 4 of 4)	38714	NM_002881	5899	Hs.469820	NM_002881	HPRD:01550	RALB	-	v-ral simian leukemia viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_98256	chr8	38303628	38303783	+	10.50559	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	21658	NM_001174067	2260	Hs.264887	NM_015850	HPRD:00634	FGFR1	BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_24456	chr12	53607230	53607464	+	10.50559	NA	exon (NM_000966, exon 8 of 10)	exon (NM_000966, exon 8 of 10)	-6256	NM_000889	3695	Hs.654470	NM_000889	HPRD:00948	ITGB7	-	integrin, beta 7	protein-coding
19-PTNLD28-TUMOR_peak_2974	chr1	43692901	43693153	+	10.50559	NA	intron (NM_001195831, intron 18 of 23)	intron (NM_001195831, intron 18 of 23)	-42638	NM_144626	128218	Hs.104476	NM_144626	HPRD:14457	TMEM125	-	transmembrane protein 125	protein-coding
19-PTNLD28-TUMOR_peak_70317	chr3	124295787	124296000	+	10.50559	NA	intron (NM_001024660, intron 34 of 59)	intron (NM_001024660, intron 34 of 59)	-7613	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_87308	chr6	39315766	39315867	+	10.50559	NA	intron (NM_001289020, intron 18 of 21)	intron (NM_001289020, intron 18 of 21)	-25486	NM_001135106	83795	Hs.287765	NM_032115	HPRD:09565	KCNK16	K2p16.1|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding
19-PTNLD28-TUMOR_peak_66667	chr3	12564020	12564494	+	10.50559	NA	intron (NM_001145394, intron 9 of 12)	intron (NM_001145394, intron 9 of 12)	22706	NM_001195279	100129480	Hs.572974	NM_001195279		MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_68586	chr3	58161148	58161351	+	10.50528	NA	Intergenic	Intergenic	35481	NM_004944	1776	Hs.476453	NM_004944	HPRD:03764	DNASE1L3	DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease I-like 3	protein-coding
19-PTNLD28-TUMOR_peak_47486	chr19	13107485	13107760	+	10.49845	NA	intron (NM_002501, intron 1 of 9)	CpG	1038	NM_002501	4784	Hs.257970	NM_002501	HPRD:01234	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_97887	chr8	28112298	28112487	+	10.49532	NA	Intergenic	L2c|LINE|L2	-62257	NM_006228	5368	Hs.88218	NM_006228	HPRD:03268	PNOC	PPNOC	prepronociceptin	protein-coding
19-PTNLD28-TUMOR_peak_6838	chr1	151966490	151966774	+	10.49527	NA	promoter-TSS (NM_002966)	promoter-TSS (NM_002966)	82	NM_002966	6281	Hs.143873	NM_002966	HPRD:00232	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
19-PTNLD28-TUMOR_peak_82425	chr5	137368662	137368890	+	10.49449	NA	promoter-TSS (NM_016603)	promoter-TSS (NM_016603)	26	NM_016603	51306	Hs.567453	NM_016603	HPRD:06464	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13, member B	protein-coding
19-PTNLD28-TUMOR_peak_35646	chr16	740369	740512	+	10.49449	NA	promoter-TSS (NM_032259)	promoter-TSS (NM_032259)	-40	NM_032259	84219	Hs.459632	NM_032259	HPRD:15665	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
19-PTNLD28-TUMOR_peak_34506	chr15	74946169	74946324	+	10.49449	NA	intron (NM_001142444, intron 5 of 7)	intron (NM_001142444, intron 5 of 7)	38911	NM_001130028	1198	Hs.584748	NM_001292	HPRD:04290	CLK3	PHCLK3|PHCLK3/152	CDC-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_68893	chr3	69058832	69058967	+	10.49449	NA	exon (NM_173654, exon 4 of 15)	exon (NM_173654, exon 4 of 15)	4146	NM_001278689	285203	Hs.518059	NM_173654	HPRD:12435	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
19-PTNLD28-TUMOR_peak_1488	chr1	24126053	24126355	+	10.49449	NA	promoter-TSS (NM_001127621)	promoter-TSS (NM_001127621)	-144	NM_001127621	2582	Hs.632380	NM_000403	HPRD:06092	GALE	SDR1E1	UDP-galactose-4-epimerase	protein-coding
19-PTNLD28-TUMOR_peak_74794	chr4	25236467	25236631	+	10.49167	NA	intron (NM_018323, intron 1 of 9)	intron (NM_018323, intron 1 of 9)	896	NM_018323	55300	Hs.191701	NM_018323	HPRD:15132	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_34985	chr15	85290839	85291195	+	10.49167	NA	promoter-TSS (NM_014630)	promoter-TSS (NM_014630)	-801	NM_014630	9640	Hs.79347	NM_014630	HPRD:10339	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
19-PTNLD28-TUMOR_peak_106292	chr9	131445640	131445815	+	10.48940	NA	promoter-TSS (NM_001122821)	promoter-TSS (NM_001122821)	-207	NM_001122821	6418	Hs.436687	NM_003011	HPRD:09023	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_102369	chr9	19128850	19129047	+	10.48940	NA	Intergenic	Intergenic	-1344	NM_001122	123	Hs.3416	NM_001122	HPRD:00057	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
19-PTNLD28-TUMOR_peak_85643	chr6	16258098	16258385	+	10.48940	NA	intron (NM_006877, intron 4 of 8)	MIR3|SINE|MIR	19430	NM_006877	2766	Hs.484741	NM_006877	HPRD:00754	GMPR	GMPR1	guanosine monophosphate reductase	protein-coding
19-PTNLD28-TUMOR_peak_78329	chr4	185820561	185820730	+	10.48743	NA	promoter-TSS (NR_039977)	promoter-TSS (NR_039977)	-30	NR_039976	100506229	Hs.378150	NR_039975		LINC01093	-	long intergenic non-protein coding RNA 1093	ncRNA
19-PTNLD28-TUMOR_peak_109449	chrX	129535839	129535981	+	10.48743	NA	promoter-TSS (NM_016024)	promoter-TSS (NM_016024)	-33	NM_016024	51634	Hs.740515	NM_016024	HPRD:06470	RBMX2	CGI-79	RNA binding motif protein, X-linked 2	protein-coding
19-PTNLD28-TUMOR_peak_8692	chr1	182564938	182565077	+	10.48743	NA	Intergenic	Intergenic	-6613	NM_021133	6041	Hs.518545	NM_021133	HPRD:01590	RNASEL	PRCA1|RNS4	ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_40368	chr17	17206531	17206707	+	10.48743	NA	promoter-TSS (NM_020201)	promoter-TSS (NM_020201)	-61	NM_020201	56953	Hs.513977	NM_020201	HPRD:12009	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_109815	chrX	151713416	151713614	+	10.48743	NA	Intergenic	L1PA2|LINE|L1	-93122	NM_018558	55879	Hs.283081	NM_018558		GABRQ	THETA	gamma-aminobutyric acid (GABA) A receptor, theta	protein-coding
19-PTNLD28-TUMOR_peak_64215	chr22	17750758	17751020	+	10.48743	NA	Intergenic	Intergenic	-3266	NR_038398	27442	Hs.517394	NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_60615	chr20	32526958	32527148	+	10.48743	NA	Intergenic	LTR16E2|LTR|ERVL	-54405	NM_016732	22913	Hs.136947	NM_007367	HPRD:11480	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_59448	chr20	1600464	1600784	+	10.48743	NA	promoter-TSS (NM_001135844)	promoter-TSS (NM_001135844)	65	NM_006065	10326	Hs.664861	NM_006065	HPRD:04866	SIRPB1	CD172b|SIRP-BETA-1	signal-regulatory protein beta 1	protein-coding
19-PTNLD28-TUMOR_peak_40617	chr17	20475078	20475196	+	10.48743	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-7900	NM_001190790	256223	Hs.131916	NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15-like 2	protein-coding
19-PTNLD28-TUMOR_peak_98885	chr8	57232962	57233173	+	10.48743	NA	5' UTR (NM_138969, exon 1 of 7)	5' UTR (NM_138969, exon 1 of 7)	174	NM_138969	195814	Hs.170673	NM_138969	HPRD:12351	SDR16C5	RDH#2|RDH-E2|RDHE2	short chain dehydrogenase/reductase family 16C, member 5	protein-coding
19-PTNLD28-TUMOR_peak_78330	chr4	185889927	185890107	+	10.48743	NA	Intergenic	Intergenic	-49978	NM_001300782	391723	Hs.531242	NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_98200	chr8	37578306	37578495	+	10.48743	NA	Intergenic	Intergenic	-15697	NM_007175	11160	Hs.705490	NM_007175	HPRD:15437	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18	ER lipid raft associated 2	protein-coding
19-PTNLD28-TUMOR_peak_91681	chr7	25138152	25138273	+	10.48743	NA	Intergenic	Intergenic	26768	NM_018947	54205	Hs.437060	NM_018947		CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
19-PTNLD28-TUMOR_peak_11300	chr1	241746286	241746674	+	10.48743	NA	intron (NM_003679, intron 10 of 14)	L1M1|LINE|L1	51046	NM_003679	8564	Hs.731056	NM_003679	HPRD:04642	KMO	dJ317G22.1	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding
19-PTNLD28-TUMOR_peak_60191	chr20	23117557	23117790	+	10.48743	NA	Intergenic	Intergenic	-4400	NR_034149	200261	Hs.352228	NM_182535	HPRD:14124	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
19-PTNLD28-TUMOR_peak_33508	chr15	48884703	48884818	+	10.48743	NA	intron (NM_000138, intron 6 of 65)	intron (NM_000138, intron 6 of 65)	53225	NM_000138	2200	Hs.591133	NM_000138	HPRD:00618	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
19-PTNLD28-TUMOR_peak_55991	chr2	138138323	138138501	+	10.48743	NA	intron (NM_001080427, intron 11 of 26)	LTR18A|LTR|ERVL	389950	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_93037	chr7	69014757	69014928	+	10.48743	NA	Intergenic	Intergenic	47639	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_3879	chr1	60196094	60196372	+	10.48743	NA	intron (NM_001113411, intron 15 of 16)	L2b|LINE|L2	2735	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_71621	chr3	149212595	149212771	+	10.48743	NA	intron (NM_004617, intron 3 of 4)	intron (NM_004617, intron 3 of 4)	20315	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_80433	chr5	68502498	68502650	+	10.48743	NA	intron (NM_022909, intron 7 of 8)	AluSq2|SINE|Alu	-10999	NM_033281	92259	Hs.631971	NM_033281	HPRD:17600	MRPS36	MRP-S36	mitochondrial ribosomal protein S36	protein-coding
19-PTNLD28-TUMOR_peak_7972	chr1	167233406	167233547	+	10.48743	NA	intron (NM_001198786, intron 1 of 14)	intron (NM_001198786, intron 1 of 14)	43353	NR_037163	5451	Hs.283402	NM_002697	HPRD:01250	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_35733	chr16	1739296	1739428	+	10.48743	NA	intron (NM_144570, intron 2 of 4)	MIR|SINE|MIR	11084	NM_144570	90861	Hs.513261	NM_144570	HPRD:12674	HN1L	C16orf34|L11	hematological and neurological expressed 1-like	protein-coding
19-PTNLD28-TUMOR_peak_11328	chr1	242214568	242214911	+	10.48743	NA	Intergenic	L1PA2|LINE|L1	-52354	NM_001004343	440738	Hs.534971	NM_001004343	HPRD:14226	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
19-PTNLD28-TUMOR_peak_52122	chr2	36928667	36928842	+	10.48743	NA	intron (NM_001177971, intron 1 of 13)	intron (NM_001177971, intron 1 of 13)	4921	NM_001177969	5212	Hs.137415	NM_053276	HPRD:18284	VIT	-	vitrin	protein-coding
19-PTNLD28-TUMOR_peak_3417	chr1	49817516	49817723	+	10.48743	NA	intron (NM_032785, intron 3 of 13)	intron (NM_032785, intron 3 of 13)	120138	NR_046839	100874313	Hs.551277	NR_046839		AGBL4-IT1	-	AGBL4 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_18681	chr11	57560577	57560690	+	10.48743	NA	intron (NM_001085462, intron 2 of 17)	intron (NM_001085462, intron 2 of 17)	31399	NM_001085467	1500	Hs.166011	NM_001331	HPRD:03026	CTNND1	CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin (cadherin-associated protein), delta 1	protein-coding
19-PTNLD28-TUMOR_peak_68012	chr3	48096728	48096880	+	10.48743	NA	intron (NM_002375, intron 1 of 18)	SVA_F|Other|Other	33965	NM_030885	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_102789	chr9	34540945	34541083	+	10.48743	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-17977	NM_198573	375704	Hs.522085	NM_198573	HPRD:18263	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
19-PTNLD28-TUMOR_peak_56338	chr2	152804373	152804566	+	10.48743	NA	intron (NM_001005746, intron 2 of 13)	intron (NM_001005746, intron 2 of 13)	26016	NM_001005747	785	Hs.120725	NM_000726	HPRD:09057	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
19-PTNLD28-TUMOR_peak_89390	chr6	126503763	126504217	+	10.48743	NA	Intergenic	Intergenic	-60228	NR_049880	100847016		NR_049880	miRBase:MI0019302	MIR5695	-	microRNA 5695	ncRNA
19-PTNLD28-TUMOR_peak_14283	chr10	74032776	74032944	+	10.48457	NA	promoter-TSS (NM_019058)	promoter-TSS (NM_019058)	-817	NM_019058	54541	Hs.744875	NM_019058	HPRD:09662	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_249	chr1	2479859	2479992	+	10.48442	NA	Intergenic	Intergenic	-7879	NM_001297605	8764	Hs.512898	NM_003820	HPRD:04122	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	tumor necrosis factor receptor superfamily, member 14	protein-coding
19-PTNLD28-TUMOR_peak_89875	chr6	148588942	148589141	+	10.48277	NA	Intergenic	Intergenic	-74688	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_34282	chr15	70561174	70561490	+	10.48277	NA	Intergenic	Intergenic	-171076	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_106796	chr9	139886279	139886431	+	10.48045	NA	promoter-TSS (NM_183241)	promoter-TSS (NM_183241)	-515	NM_183241	286257	Hs.409582	NM_183241	HPRD:14163	C9orf142	-	chromosome 9 open reading frame 142	protein-coding
19-PTNLD28-TUMOR_peak_45914	chr18	55712841	55713011	+	10.48045	NA	intron (NM_001243960, intron 1 of 28)	intron (NM_001243960, intron 1 of 28)	1316	NM_001243960	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_86667	chr6	31803000	31803169	+	10.47562	NA	promoter-TSS (NR_002745).3	promoter-TSS (NR_002745).3	44	NR_002745	26801		NR_002745	ENSG00000201823	SNORD48	RNU48|U48	small nucleolar RNA, C/D box 48	snoRNA
19-PTNLD28-TUMOR_peak_87017	chr6	35452744	35452985	+	10.47380	NA	intron (NM_003214, intron 2 of 12)	intron (NM_003214, intron 2 of 12)	11997	NM_003214	7005	Hs.485205	NM_003214	HPRD:04411	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_44806	chr18	19794818	19794972	+	10.47060	NA	Intergenic	Intergenic	45497	NM_005257	2627	Hs.514746	NM_005257	HPRD:09043	GATA6	-	GATA binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_18272	chr11	44749499	44749624	+	10.46711	NA	Intergenic	CpG	-36415	NM_130783	90139	Hs.385634	NM_130783	HPRD:17435	TSPAN18	TSPAN	tetraspanin 18	protein-coding
19-PTNLD28-TUMOR_peak_104457	chr9	91897297	91897635	+	10.46711	NA	Intergenic	LTR12C|LTR|ERV1	-28647	NM_001827	1164	Hs.83758	NM_001827	HPRD:00300	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_40621	chr17	20601881	20601996	+	10.46711	NA	Intergenic	Intergenic	-13821	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96033	chr7	143002682	143002801	+	10.46711	NA	3' UTR (NM_032982, exon 11 of 11)	3' UTR (NM_032982, exon 11 of 11)	-10478	NM_000083	1180	Hs.121483	NM_000083	HPRD:00320	CLCN1	CLC1	chloride channel, voltage-sensitive 1	protein-coding
19-PTNLD28-TUMOR_peak_49450	chr19	46389729	46389868	+	10.46711	NA	promoter-TSS (NM_015649)	promoter-TSS (NM_015649)	-422	NM_015649	26145	Hs.515477	NM_015649	HPRD:17159	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101007	chr8	131740365	131740655	+	10.46711	NA	Intergenic	L2a|LINE|L2	-284604	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_56519	chr2	159602243	159602373	+	10.46711	NA	Intergenic	Intergenic	-49521	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_7006	chr1	153680571	153680718	+	10.46711	NA	Intergenic	Intergenic	-18375	NR_107050	102466879		NR_107050		MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
19-PTNLD28-TUMOR_peak_96469	chr7	152201542	152201757	+	10.46711	NA	Intergenic	Intergenic	40440	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
19-PTNLD28-TUMOR_peak_58673	chr2	227443666	227443911	+	10.46711	NA	Intergenic	Intergenic	79721	NR_049887	100847053		NR_049887	miRBase:MI0019309	MIR5702	-	microRNA 5702	ncRNA
19-PTNLD28-TUMOR_peak_42744	chr17	60004825	60005103	+	10.46711	NA	intron (NM_020748, intron 1 of 24)	CpG	413	NR_026641	57508	Hs.279646	NM_020748	HPRD:11137	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_97325	chr8	17352733	17352920	+	10.46711	NA	Intergenic	Intergenic	-1771	NM_001008539	6542	Hs.448520	NM_003046	HPRD:03524	SLC7A2	ATRC2|CAT2|HCAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding
19-PTNLD28-TUMOR_peak_39750	chr17	3626835	3627158	+	10.46711	NA	promoter-TSS (NM_031965)	promoter-TSS (NM_031965)	-201	NM_031965	83903	Hs.534059	NM_031965	HPRD:17083	GSG2	HASPIN	germ cell associated 2 (haspin)	protein-coding
19-PTNLD28-TUMOR_peak_36814	chr16	22951040	22951468	+	10.46711	NA	Intergenic	L1PB4|LINE|L1	125394	NM_006043	9956	Hs.115830	NM_006043	HPRD:04957	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_17204	chr11	12098483	12098646	+	10.46618	NA	Intergenic	Intergenic	-33559	NM_014632	9645	Hs.501928	NM_014632	HPRD:10085	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_34257	chr15	70316249	70316456	+	10.46520	NA	Intergenic	Intergenic	55455	NR_030714	693214		NR_030714		MIR629	MIRN629|hsa-mir-629	microRNA 629	ncRNA
19-PTNLD28-TUMOR_peak_17403	chr11	15841360	15841516	+	10.46520	NA	Intergenic	MamGypLTR3|LTR|Gypsy	149729	NR_106721	102464826		NR_106721		MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
19-PTNLD28-TUMOR_peak_62242	chr20	55799869	55800101	+	10.46520	NA	intron (NM_001719, intron 2 of 6)	intron (NM_001719, intron 2 of 6)	11233	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48218	chr19	21326730	21326989	+	10.45877	NA	intron (NM_133473, intron 2 of 4)	intron (NM_133473, intron 2 of 4)	2019	NM_133473	170959	Hs.656394	NM_133473	HPRD:15789	ZNF431	-	zinc finger protein 431	protein-coding
19-PTNLD28-TUMOR_peak_46599	chr19	1605503	1605671	+	10.45877	NA	promoter-TSS (NM_006830)	promoter-TSS (NM_006830)	-104	NM_006830	10975	Hs.8372	NM_006830	HPRD:15628	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
19-PTNLD28-TUMOR_peak_20282	chr11	78830648	78830827	+	10.45877	NA	intron (NM_001098816, intron 4 of 33)	intron (NM_001098816, intron 4 of 33)	282416	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_39205	chr16	85591928	85592138	+	10.45628	NA	Intergenic	Intergenic	-52996	NM_001134473	23199	Hs.461647	NM_014615	HPRD:11066	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_74363	chr4	8558474	8558678	+	10.45628	NA	Intergenic	AluSq2|SINE|Alu	-23388	NR_045511	27201	Hs.740355	NM_080819		GPR78	-	G protein-coupled receptor 78	protein-coding
19-PTNLD28-TUMOR_peak_72851	chr3	185221329	185221590	+	10.45628	NA	Intergenic	Intergenic	-4614	NM_080652	90407	Hs.677570	NM_080652	HPRD:15539	TMEM41A	2900010K02Rik	transmembrane protein 41A	protein-coding
19-PTNLD28-TUMOR_peak_5886	chr1	117914218	117914315	+	10.45573	NA	intron (NM_006699, intron 1 of 12)	L2c|LINE|L2	4181	NM_006699	10905	Hs.435938	NM_006699		MAN1A2	MAN1B	mannosidase, alpha, class 1A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_43649	chr17	75368593	75368723	+	10.45538	NA	promoter-TSS (NM_001113493)	promoter-TSS (NM_001113493)	-614	NM_001113493	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_86914	chr6	34112982	34113423	+	10.45538	NA	intron (NM_000841, intron 1 of 10)	CpG	712	NM_001256811	2914	Hs.429018	NM_000841	HPRD:04978	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate receptor, metabotropic 4	protein-coding
19-PTNLD28-TUMOR_peak_40965	chr17	30466029	30466144	+	10.45538	NA	Intergenic	Intergenic	-3387	NM_001033568	55288	Hs.655325	NM_018307	HPRD:15247	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
19-PTNLD28-TUMOR_peak_108476	chrX	57618350	57618566	+	10.45538	NA	5' UTR (NM_007157, exon 1 of 1)	5' UTR (NM_007157, exon 1 of 1)	189	NM_007157	158586	Hs.156257	NM_007157	HPRD:11777	ZXDB	ZNF905|dJ83L6.1	zinc finger, X-linked, duplicated B	protein-coding
19-PTNLD28-TUMOR_peak_2957	chr1	43474237	43474613	+	10.45538	NA	Intergenic	Intergenic	-49578	NM_006516	6513	Hs.473721	NM_006516	HPRD:00683	SLC2A1	DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_10687	chr1	229039572	229039700	+	10.45538	NA	Intergenic	Intergenic	168812	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_1628	chr1	26202380	26202506	+	10.45538	NA	Intergenic	CpG	-4699	NM_178422	164091	Hs.523652	NM_178422	HPRD:09692	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member VII	protein-coding
19-PTNLD28-TUMOR_peak_32889	chr15	31780962	31781363	+	10.45538	NA	intron (NM_130901, intron 8 of 10)	intron (NM_130901, intron 8 of 10)	162079	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_37019	chr16	28289126	28289258	+	10.45524	NA	Intergenic	Intergenic	-14648	NM_001024401	388228	Hs.97837	NM_001024401	HPRD:18608	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_98968	chr8	61918445	61918894	+	10.45524	NA	Intergenic	Intergenic	-38362	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_36255	chr16	10832743	10832898	+	10.45524	NA	Intergenic	AluSq|SINE|Alu	-4823	NM_001278506	4682	Hs.81469	NM_002484	HPRD:02611	NUBP1	NBP|NBP1|NBP35	nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_56020	chr2	139025100	139025276	+	10.45524	NA	Intergenic	Intergenic	-234162	NM_001001664	339745	Hs.333297	NM_001001664	HPRD:11261	SPOPL	BTBD33	speckle-type POZ protein-like	protein-coding
19-PTNLD28-TUMOR_peak_55994	chr2	138192926	138193128	+	10.45524	NA	intron (NM_001080427, intron 13 of 26)	intron (NM_001080427, intron 13 of 26)	444565	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_94757	chr7	106787636	106787738	+	10.45524	NA	intron (NM_002736, intron 6 of 10)	AluYc|SINE|Alu	-21719	NM_001244262	26959	Hs.162032	NM_012257	HPRD:13634	HBP1	-	HMG-box transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_15864	chr10	119221396	119221568	+	10.45524	NA	Intergenic	Intergenic	-80474	NM_001165924	2018	Hs.202095	NM_004098	HPRD:02495	EMX2	-	empty spiracles homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_3370	chr1	48527008	48527122	+	10.45524	NA	Intergenic	Intergenic	-64503	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_60270	chr20	24899074	24899189	+	10.45524	NA	Intergenic	CpG	-30735	NM_003650	8530	Hs.143212	NM_003650	HPRD:04458	CST7	CMAP	cystatin F (leukocystatin)	protein-coding
19-PTNLD28-TUMOR_peak_52331	chr2	42218041	42218249	+	10.45524	NA	Intergenic	Intergenic	-37202	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_74899	chr4	31460597	31460727	+	10.45524	NA	Intergenic	LTR78B|LTR|ERV1	738625	NM_032457	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_72762	chr3	184023512	184023616	+	10.45524	NA	exon (NM_002808, exon 13 of 21)	exon (NM_002808, exon 13 of 21)	5195	NM_001278709	5708	Hs.518464	NM_002808	HPRD:05870	PSMD2	P97|RPN1|S2|TRAP2	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding
19-PTNLD28-TUMOR_peak_2495	chr1	37783710	37783966	+	10.45524	NA	Intergenic	CpG	156206	NR_038842	728431	Hs.380738	NR_038842	ENSG00000233621	LINC01137	-	long intergenic non-protein coding RNA 1137	ncRNA
19-PTNLD28-TUMOR_peak_40094	chr17	8279769	8280201	+	10.45524	NA	TTS (NM_000987)	TTS (NM_000987)	-5127	NM_213597	124751	Hs.304604	NM_213597	HPRD:14028	KRBA2	-	KRAB-A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28266	chr13	51654685	51655048	+	10.45524	NA	Intergenic	L1PA6|LINE|L1	-14573	NR_003923	2974	Hs.411573	NM_004129	HPRD:07542	GUCY1B2	GC-SB2	guanylate cyclase 1, soluble, beta 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_58110	chr2	209096810	209096944	+	10.45524	NA	Intergenic	LOR1a|LTR|ERV1	22150	NM_001282387	3417	Hs.593422	NM_005896	HPRD:00984	IDH1	HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding
19-PTNLD28-TUMOR_peak_71285	chr3	140160061	140160188	+	10.45524	NA	intron (NM_022131, intron 5 of 16)	intron (NM_022131, intron 5 of 16)	67507	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46324	chr18	74515841	74515953	+	10.45524	NA	intron (NR_040024, intron 2 of 2)	intron (NR_040024, intron 2 of 2)	18354	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	ncRNA
19-PTNLD28-TUMOR_peak_81523	chr5	111002881	111003043	+	10.45524	NA	intron (NR_040093, intron 1 of 6)	L2b|LINE|L2	88986	NM_001142483	9315	Hs.36053	NM_004772	HPRD:09545	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
19-PTNLD28-TUMOR_peak_4234	chr1	68225782	68225998	+	10.45524	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	-72081	NR_040077	100289178	Hs.677603	NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_12764	chr10	31101485	31101752	+	10.45524	NA	Intergenic	Intergenic	120415	NR_036438	645954	Hs.408581	NR_036438	ENSG00000234814	SVILP1	-	supervillin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_6985	chr1	153583460	153583615	+	10.45395	NA	intron (NM_080388, intron 1 of 2)	intron (NM_080388, intron 1 of 2)	1977	NM_080388	140576	Hs.515714	NM_080388	HPRD:11529	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
19-PTNLD28-TUMOR_peak_8068	chr1	168554571	168554731	+	10.44909	NA	Intergenic	Intergenic	8940	NM_002995	6375	Hs.546295	NM_002995	HPRD:02595	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	chemokine (C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_52617	chr2	47168612	47168983	+	10.44110	NA	exon (NM_020458, exon 1 of 20)	exon (NM_020458, exon 1 of 20)	197	NM_001171508	90411	Hs.662152	NM_139279	HPRD:09693	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
19-PTNLD28-TUMOR_peak_97603	chr8	22462477	22462771	+	10.43795	NA	promoter-TSS (NM_021174)	promoter-TSS (NM_021174)	85	NM_021174	57805	Hs.744848	NM_021174	HPRD:09159	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_101410	chr8	141640088	141640248	+	10.43777	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	5478	NM_012154	27161	Hs.743313	NM_012154	HPRD:06943	AGO2	EIF2C2|Q10	argonaute RISC catalytic component 2	protein-coding
19-PTNLD28-TUMOR_peak_62572	chr20	61900197	61900325	+	10.43777	NA	Intergenic	Intergenic	-3876	NM_175609	55738	Hs.25584	NM_018209	HPRD:06443	ARFGAP1	ARF1GAP|HRIHFB2281	ADP-ribosylation factor GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10310	chr1	223893929	223894130	+	10.43466	NA	intron (NM_001146068, intron 1 of 20)	intron (NM_001146068, intron 1 of 20)	4734	NM_001146068	824	Hs.350899	NM_001748	HPRD:00254	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2, (m/II) large subunit	protein-coding
19-PTNLD28-TUMOR_peak_52099	chr2	36584838	36585239	+	10.43300	NA	intron (NM_016441, intron 1 of 16)	intron (NM_016441, intron 1 of 16)	1668	NM_016441	51232	Hs.699247	NM_016441	HPRD:08392	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
19-PTNLD28-TUMOR_peak_92066	chr7	37960188	37960444	+	10.43176	NA	promoter-TSS (NM_001242948)	promoter-TSS (NM_001242948)	153	NM_001242946	54749	Hs.563491	NM_017549	HPRD:16865	EPDR1	EPDR|MERP-1|MERP1|UCC1	ependymin related 1	protein-coding
19-PTNLD28-TUMOR_peak_106302	chr9	131533381	131533617	+	10.43176	NA	intron (NM_006336, intron 1 of 15)	intron (NM_006336, intron 1 of 15)	714	NM_006336	10444	Hs.147950	NM_006336	HPRD:10802	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related, cell cycle regulator	protein-coding
19-PTNLD28-TUMOR_peak_6639	chr1	149891005	149891303	+	10.43176	NA	Intergenic	AluSx|SINE|Alu	-1720	NM_014849	9900	Hs.516153	NM_014849	HPRD:08922	SV2A	SV2	synaptic vesicle glycoprotein 2A	protein-coding
19-PTNLD28-TUMOR_peak_19530	chr11	67553358	67553486	+	10.43176	NA	Intergenic	Intergenic	19385	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_43821	chr17	77301965	77302132	+	10.43176	NA	intron (NM_001082575, intron 3 of 14)	intron (NM_001082575, intron 3 of 14)	210182	NM_001082575	146713	Hs.135229	NM_001025448	HPRD:18730	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
19-PTNLD28-TUMOR_peak_66680	chr3	12748102	12748213	+	10.43176	NA	Intergenic	Intergenic	-42457	NM_002880	5894	Hs.159130	NM_002880	HPRD:01265	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_70374	chr3	124842781	124842933	+	10.43089	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	27539	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_89763	chr6	143166360	143166475	+	10.42984	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	99921	NM_006734	3097	Hs.510172	NM_006734	HPRD:00881	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_101534	chr8	143485321	143485550	+	10.42984	NA	promoter-TSS (NM_145003)	promoter-TSS (NM_145003)	-825	NM_001291931	203062	Hs.370931	NM_145003	HPRD:08708	TSNARE1	-	t-SNARE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89874	chr6	148586300	148586420	+	10.42984	NA	Intergenic	AluJo|SINE|Alu	-77369	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_79355	chr5	32583813	32584139	+	10.42984	NA	Intergenic	Intergenic	-1629	NM_006713	10923	Hs.229641	NM_006713	HPRD:02737	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_60002	chr20	17787382	17787669	+	10.42984	NA	Intergenic	Intergenic	106932	NM_001014977	140836	Hs.115366	NM_178477	HPRD:12759	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
19-PTNLD28-TUMOR_peak_56672	chr2	162361254	162361729	+	10.42973	NA	non-coding (NR_077058, exon 1 of 1)	non-coding (NR_077058, exon 1 of 1)	2922	NR_077058	285116	Hs.470435	NR_077058		AHCTF1P1	AHCTF1P|ELYS-like	AT hook containing transcription factor 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_81645	chr5	114645474	114645661	+	10.42973	NA	Intergenic	Intergenic	-13109	NM_001040440	153733	Hs.436121	NM_152549	HPRD:11346	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
19-PTNLD28-TUMOR_peak_42798	chr17	61027470	61027747	+	10.42973	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-59290	NM_025185	26115	Hs.410889	NM_015623	ENSG00000170921	TANC2	ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
19-PTNLD28-TUMOR_peak_16842	chr11	5829810	5829964	+	10.42973	NA	Intergenic	HERVI-int|LTR|ERV1	-11679	NM_001005174	390077	Hs.553737	NM_001005174	HPRD:17745	OR52N2	OR11-57	olfactory receptor, family 52, subfamily N, member 2	protein-coding
19-PTNLD28-TUMOR_peak_30849	chr14	66258288	66258401	+	10.42973	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	378896	NR_038170	2530	Hs.597649	NM_004480	HPRD:03994	FUT8	-	fucosyltransferase 8 (alpha (1,6) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_45381	chr18	40220189	40220392	+	10.42973	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	453657	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_37691	chr16	48807918	48808104	+	10.42973	NA	Intergenic	L1PA2|LINE|L1	-163891	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_56421	chr2	156698546	156699044	+	10.42973	NA	Intergenic	Intergenic	412648	NR_110249	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_59045	chr2	237585202	237585430	+	10.42973	NA	Intergenic	Intergenic	106936	NM_020311	57007	Hs.471751	NM_020311	HPRD:09882	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_4551	chr1	84464811	84465209	+	10.42973	NA	promoter-TSS (NM_024686)	promoter-TSS (NM_024686)	-177	NM_024686	79739	Hs.445826	NM_024686		TTLL7	-	tubulin tyrosine ligase-like family, member 7	protein-coding
19-PTNLD28-TUMOR_peak_23378	chr12	22441102	22441265	+	10.42973	NA	intron (NM_003034, intron 1 of 4)	intron (NM_003034, intron 1 of 4)	46465	NM_003034	6489	Hs.408614	NM_003034	HPRD:03078	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_95036	chr7	126582634	126582841	+	10.42973	NA	intron (NR_028041, intron 2 of 10)	intron (NR_028041, intron 2 of 10)	115501	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_96532	chr7	153313921	153314430	+	10.42973	NA	Intergenic	Intergenic	-204856	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_89313	chr6	122437233	122437763	+	10.42973	NA	Intergenic	Intergenic	-283198	NM_001135564	3298	Hs.158195	NM_004506	HPRD:00779	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_57858	chr2	203000391	203000548	+	10.42973	NA	intron (NM_001277372, intron 12 of 21)	intron (NM_001277372, intron 12 of 21)	62491	NM_001277372	100652824	Hs.686898	NM_001080445		LOC100652824	-	uncharacterized protein KIAA2012	protein-coding
19-PTNLD28-TUMOR_peak_57664	chr2	198504897	198505454	+	10.42973	NA	intron (NM_144629, intron 3 of 8)	L1HS|LINE|L1	35409	NM_144629	130132	Hs.591615	NM_144629		RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
19-PTNLD28-TUMOR_peak_45775	chr18	48736399	48736634	+	10.42973	NA	Intergenic	Intergenic	-12465	NM_016626	51320	Hs.465144	NM_016626	HPRD:15255	MEX3C	MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
19-PTNLD28-TUMOR_peak_94080	chr7	96734093	96734240	+	10.42973	NA	Intergenic	Intergenic	-11739	NM_020186	57001	Hs.592269	NM_020186	HPRD:16471	ACN9	-	ACN9 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_97863	chr8	27714005	27714340	+	10.42973	NA	Intergenic	L1M4b|LINE|L1	-18560	NM_001278945	55872	Hs.104741	NM_018492	HPRD:17822	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
19-PTNLD28-TUMOR_peak_13470	chr10	48813242	48813411	+	10.42973	NA	intron (NM_015605, intron 1 of 8).2	intron (NM_015605, intron 1 of 8).2	-6341	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_108671	chrX	70436264	70436511	+	10.42973	NA	intron (NM_001097642, intron 1 of 1)	MIRb|SINE|MIR	1325	NM_001097642	2705	Hs.333303	NM_000166	HPRD:02367	GJB1	CMTX|CMTX1|CX32	gap junction protein, beta 1, 32kDa	protein-coding
19-PTNLD28-TUMOR_peak_94764	chr7	106931986	106932242	+	10.42973	NA	intron (NM_181733, intron 12 of 20)	L1MB8|LINE|L1	122654	NM_012257	26959	Hs.162032	NM_012257	HPRD:13634	HBP1	-	HMG-box transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_90165	chr6	155506691	155506999	+	10.42973	NA	intron (NM_012454, intron 13 of 25)	intron (NM_012454, intron 13 of 25)	-31252	NM_001010927	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_72027	chr3	158818644	158818750	+	10.42973	NA	intron (NM_001042706, intron 1 of 3)	L1HS|LINE|L1	31656	NM_001197100	654502	Hs.570685	NM_001042705	ENSG00000214216	IQCJ	-	IQ motif containing J	protein-coding
19-PTNLD28-TUMOR_peak_90547	chr6	168085628	168085792	+	10.42838	NA	Intergenic	Intergenic	-1243	NR_117092	441178	Hs.628956	NM_001025489		LOC441178	-	uncharacterized LOC441178	ncRNA
19-PTNLD28-TUMOR_peak_61889	chr20	49613863	49614011	+	10.42737	NA	Intergenic	Intergenic	25738	NM_002237	3755	Hs.118695	NM_002237	HPRD:04809	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel, subfamily G, member 1	protein-coding
19-PTNLD28-TUMOR_peak_100745	chr8	127516489	127516619	+	10.42737	NA	Intergenic	LTR64|LTR|ERV1	54157	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_67390	chr3	31917866	31918106	+	10.42737	NA	exon (NM_001174060, exon 3 of 11)	exon (NM_001174060, exon 3 of 11)	-105280	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
19-PTNLD28-TUMOR_peak_101530	chr8	143376069	143376275	+	10.42737	NA	intron (NM_001291931, intron 8 of 10)	intron (NM_001291931, intron 8 of 10)	96455	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
19-PTNLD28-TUMOR_peak_91197	chr7	6769368	6769795	+	10.42737	NA	Intergenic	CpG	-5355	NR_002217	441194	Hs.715590	NR_002217	ENSG00000187953	PMS2CL	PMS2P13	PMS2 C-terminal like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_104978	chr9	102154568	102154759	+	10.42737	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-17124	NR_102270	100996569	Hs.745280	NR_102270	ENSG00000271086	NAMA	-	non-protein coding RNA, associated with MAP kinase pathway and growth arrest	ncRNA
19-PTNLD28-TUMOR_peak_62980	chr21	27336486	27336620	+	10.42292	NA	intron (NM_001136130, intron 10 of 16)	intron (NM_001136130, intron 10 of 16)	176155	NM_001136016	351	Hs.434980	NM_000484	HPRD:00100	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
19-PTNLD28-TUMOR_peak_23077	chr12	12185354	12185669	+	10.42292	NA	Intergenic	Intergenic	-38367	NM_138723	79370	Hs.210343	NM_030766	HPRD:05841	BCL2L14	BCLG	BCL2-like 14 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_60748	chr20	34580788	34580883	+	10.42292	NA	intron (NM_080834, intron 7 of 11)	intron (NM_080834, intron 7 of 11)	24306	NM_001207076	140894	Hs.732697	NM_080834	HPRD:09838	CNBD2	C20orf152|CNMPD1|dJ954P9.1	cyclic nucleotide binding domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_86912	chr6	34100464	34100565	+	10.42292	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	13400	NM_001256811	2914	Hs.429018	NM_000841	HPRD:04978	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate receptor, metabotropic 4	protein-coding
19-PTNLD28-TUMOR_peak_85428	chr6	12570801	12570906	+	10.42292	NA	Intergenic	LTR67B|LTR|ERVL	-146184	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_9154	chr1	200842234	200842634	+	10.42292	NA	exon (NM_005298, exon 1 of 1)	exon (NM_005298, exon 1 of 1)	351	NM_005298	2848	Hs.534316	NM_005298	HPRD:03707	GPR25	-	G protein-coupled receptor 25	protein-coding
19-PTNLD28-TUMOR_peak_94243	chr7	99516605	99517277	+	10.42292	NA	exon (NM_033017, exon 1 of 7)	exon (NM_033017, exon 1 of 7)	282	NM_033017	89122	Hs.50749	NM_033017	HPRD:15556	TRIM4	RNF87	tripartite motif containing 4	protein-coding
19-PTNLD28-TUMOR_peak_76294	chr4	95128657	95129229	+	10.42292	NA	promoter-TSS (NM_001128429)	promoter-TSS (NM_001128429)	-53	NM_001128429	56916	Hs.410406	NM_020159	HPRD:11586	SMARCAD1	ADERM|ETL1|HEL1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
19-PTNLD28-TUMOR_peak_57173	chr2	178116863	178117070	+	10.42292	NA	intron (NM_006164, intron 1 of 4)	MIRb|SINE|MIR	3772	NR_036075	100422824		NR_036075		MIR3128	-	microRNA 3128	ncRNA
19-PTNLD28-TUMOR_peak_80766	chr5	75378658	75379310	+	10.42292	NA	promoter-TSS (NM_014979)	promoter-TSS (NM_014979)	-255	NM_014979	22987	Hs.663229	NM_014979	HPRD:18753	SV2C	-	synaptic vesicle glycoprotein 2C	protein-coding
19-PTNLD28-TUMOR_peak_82701	chr5	140705725	140705863	+	10.42292	NA	Intergenic	Intergenic	-4458	NM_018912	56114	Hs.368160	NM_018912	HPRD:07551	PCDHGA1	PCDH-GAMMA-A1	protocadherin gamma subfamily A, 1	protein-coding
19-PTNLD28-TUMOR_peak_29374	chr14	21516806	21516970	+	10.42292	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	6503	NM_032572	84659	Hs.525206	NM_032572	HPRD:17981	RNASE7	-	ribonuclease, RNase A family, 7	protein-coding
19-PTNLD28-TUMOR_peak_108235	chrX	48456364	48456679	+	10.42292	NA	5' UTR (NM_001166426, exon 1 of 8)	5' UTR (NM_001166426, exon 1 of 8)	297	NM_001166426	64743	Hs.521973	NM_017883	HPRD:06753	WDR13	MG21	WD repeat domain 13	protein-coding
19-PTNLD28-TUMOR_peak_55373	chr2	121384348	121384487	+	10.42078	NA	Intergenic	Intergenic	-160492	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_89883	chr6	148663644	148663999	+	10.41927	NA	promoter-TSS (NM_015278)	promoter-TSS (NM_015278)	92	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_54395	chr2	98808491	98808686	+	10.41927	NA	intron (NM_144992, intron 10 of 27)	intron (NM_144992, intron 10 of 27)	104993	NM_144992	200403	Hs.269977	NM_144992	HPRD:14510	VWA3B	-	von Willebrand factor A domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_20443	chr11	86281624	86281781	+	10.41927	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	101538	NM_001014811	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_97333	chr8	17477487	17477610	+	10.41927	NA	intron (NM_006207, intron 3 of 6)	AluJr4|SINE|Alu	43606	NM_006207	5157	Hs.458573	NM_006207	HPRD:05206	PDGFRL	PDGRL|PRLTS	platelet-derived growth factor receptor-like	protein-coding
19-PTNLD28-TUMOR_peak_29797	chr14	33531813	33531976	+	10.41927	NA	intron (NM_001164749, intron 2 of 11)	intron (NM_001164749, intron 2 of 11)	123435	NM_173159	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_101734	chr8	145447219	145447363	+	10.41703	NA	Intergenic	CpG	9411	NM_016458	51236	Hs.300224	NM_016458	HPRD:17423	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_56253	chr2	150278565	150278723	+	10.40978	NA	intron (NM_194317, intron 1 of 4)	intron (NM_194317, intron 1 of 4)	91615	NM_194317	130574	Hs.21929	NM_194317	HPRD:14676	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_50655	chr1_gl000192_random	120740	120863	+	10.40978	NA	Intergenic	LTR84b|LTR|ERVL	286709	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_6239	chr1	144994949	144995065	+	10.40857	NA	promoter-TSS (NM_014644)	promoter-TSS (NM_014644)	26	NM_001002810	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_106296	chr9	131448458	131448551	+	10.40655	NA	intron (NM_001248000, intron 1 of 7)	intron (NM_001248000, intron 1 of 7)	1139	NM_001248000	6418	Hs.436687	NM_003011	HPRD:09023	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_40573	chr17	19555266	19555386	+	10.40655	NA	intron (NM_001031806, intron 2 of 10)	intron (NM_001031806, intron 2 of 10)	3262	NM_001031806	224	Hs.499886	NM_000382	HPRD:07188	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_54825	chr2	110515142	110515423	+	10.40540	NA	Intergenic	Intergenic	-35053	NM_032260	84220	Hs.469630	NM_005054	HPRD:04128	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_85391	chr6	11974461	11974613	+	10.40494	NA	Intergenic	Intergenic	-38187	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100212	chr8	117640215	117640369	+	10.40494	NA	Intergenic	Intergenic	127770	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_60890	chr20	36193914	36194171	+	10.40494	NA	Intergenic	L2b|LINE|L2	-37709	NM_006698	10904	Hs.472651	NM_006698	HPRD:16552	BLCAP	BC10	bladder cancer associated protein	protein-coding
19-PTNLD28-TUMOR_peak_45540	chr18	44880338	44880604	+	10.40494	NA	Intergenic	L1PA2|LINE|L1	-104917	NM_001278063	652991	Hs.585834	NM_001037802	ENSG00000215474	SKOR2	CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_7080	chr1	154506882	154507021	+	10.40494	NA	intron (NM_182499, intron 6 of 12)	intron (NM_182499, intron 6 of 12)	24169	NM_017582	55585	Hs.607928	NM_017582	HPRD:15601	UBE2Q1	GTAP|NICE-5|UBE2Q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding
19-PTNLD28-TUMOR_peak_40789	chr17	26988876	26989510	+	10.40494	NA	promoter-TSS (NR_045585)	promoter-TSS (NR_045585)	-3	NM_006923	6388	Hs.514036	NM_006923	HPRD:04243	SDF2	-	stromal cell-derived factor 2	protein-coding
19-PTNLD28-TUMOR_peak_39285	chr16	87642133	87642261	+	10.40494	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	5704	NM_001271605	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_93033	chr7	68899321	68899593	+	10.40494	NA	Intergenic	Intergenic	163024	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_76215	chr4	89241736	89241867	+	10.40494	NA	Intergenic	Intergenic	-35818	NM_152542	152926	Hs.43744	NM_152542	HPRD:15167	PPM1K	BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent, 1K	protein-coding
19-PTNLD28-TUMOR_peak_3771	chr1	57628630	57628900	+	10.40494	NA	intron (NM_021080, intron 4 of 16)	L2a|LINE|L2	-196952	NM_001278544	732	Hs.391835	NM_000066	HPRD:00410	C8B	C82	complement component 8, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_60158	chr20	22385094	22385239	+	10.40494	NA	intron (NR_027090, intron 1 of 2)	intron (NR_027090, intron 1 of 2)	16115	NR_027090	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
19-PTNLD28-TUMOR_peak_50744	chr2	649043	649305	+	10.40494	NA	Intergenic	Intergenic	28265	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_10952	chr1	233979462	233979611	+	10.40494	NA	Intergenic	Intergenic	-60922	NM_173508	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_16759	chr11	3567274	3567458	+	10.40494	NA	Intergenic	LTR5A|LTR|ERVK	-80324	NR_002720	7221	Hs.131910	NR_002720	ENSG00000182048	TRPC2	-	transient receptor potential cation channel, subfamily C, member 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_37550	chr16	34394951	34395056	+	10.40494	NA	Intergenic	L1PA3|LINE|L1	9759	NR_002837	606551	Hs.646441	NR_002837		UBE2MP1	-	ubiquitin-conjugating enzyme E2M pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_27794	chr13	34298081	34298211	+	10.40494	NA	Intergenic	Intergenic	-47174	NM_001243476	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_36546	chr16	16307776	16308020	+	10.40494	NA	intron (NM_001171, intron 5 of 30)	MER58A|DNA|hAT-Charlie	9430	NM_001171	368	Hs.442182	NM_001171	HPRD:04453	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding
19-PTNLD28-TUMOR_peak_98262	chr8	38346044	38346351	+	10.40494	NA	Intergenic	Intergenic	-19845	NM_023105	2260	Hs.264887	NM_015850	HPRD:00634	FGFR1	BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_28682	chr13	93897243	93897355	+	10.40494	NA	intron (NM_005708, intron 1 of 8)	intron (NM_005708, intron 1 of 8)	18221	NM_005708	10082	Hs.444329	NM_005708	HPRD:05099	GPC6	OMIMD1	glypican 6	protein-coding
19-PTNLD28-TUMOR_peak_75997	chr4	83437080	83437259	+	10.40494	NA	intron (NM_001080506, intron 1 of 7)	intron (NM_001080506, intron 1 of 7)	45957	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
19-PTNLD28-TUMOR_peak_17908	chr11	33651762	33651876	+	10.40399	NA	intron (NM_012194, intron 15 of 19)	L1PA3|LINE|L1	70467	NM_001166692	100131378	Hs.709466	NM_001166692		C11orf91	-	chromosome 11 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_41767	chr17	43124665	43124773	+	10.40399	NA	intron (NM_001288654, intron 1 of 4)	AluJb|SINE|Alu	4166	NM_001288655	79877	Hs.463148	NM_024819	HPRD:08012	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_8474	chr1	178694669	178694817	+	10.40399	NA	intron (NM_001286247, intron 1 of 18)	CpG	461	NM_152663	55103	Hs.632485	NM_018037	HPRD:15206	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
19-PTNLD28-TUMOR_peak_57237	chr2	180129170	180129636	+	10.40399	NA	promoter-TSS (NM_178123)	promoter-TSS (NM_178123)	-53	NM_178123	91404	Hs.30977	NM_178123	HPRD:11549	SESTD1	SOLO	SEC14 and spectrin domains 1	protein-coding
19-PTNLD28-TUMOR_peak_63958	chr21	45848279	45848631	+	10.40399	NA	intron (NR_038257, intron 27 of 31)	intron (NR_038257, intron 27 of 31)	-3009	NR_109964	101928607	Hs.666176	NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_44345	chr18	3602496	3602647	+	10.40010	NA	intron (NM_001242764, intron 4 of 9)	AluY|SINE|Alu	-1164	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_10496	chr1	226497137	226497248	+	10.39910	NA	promoter-TSS (NM_173083)	promoter-TSS (NM_173083)	12	NM_001270409	286826	Hs.120817	NM_173083	HPRD:13990	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
19-PTNLD28-TUMOR_peak_8434	chr1	178030017	178030140	+	10.39910	NA	Intergenic	Intergenic	-22936	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_60026	chr20	18201953	18202082	+	10.39910	NA	Intergenic	AluJr|SINE|Alu	-66910	NM_001282996	7692	Hs.472221	NM_003434	HPRD:04964	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
19-PTNLD28-TUMOR_peak_40716	chr17	25568617	25568936	+	10.39910	NA	Intergenic	Intergenic	52246	NR_039748	100616277		NR_039748	miRBase:MI0016889	MIR4522	-	microRNA 4522	ncRNA
19-PTNLD28-TUMOR_peak_41367	chr17	38440115	38440254	+	10.39910	NA	Intergenic	Intergenic	-3962	NM_001254	990	Hs.405958	NM_001254	HPRD:04022	CDC6	CDC18L|HsCDC18|HsCDC6	cell division cycle 6	protein-coding
19-PTNLD28-TUMOR_peak_46388	chr18	77144475	77144718	+	10.39910	NA	Intergenic	L1MB3|LINE|L1	-11176	NM_001278669	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_18305	chr11	45127112	45127268	+	10.39910	NA	intron (NR_046338, intron 2 of 7)	intron (NR_046338, intron 2 of 7)	11626	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_78832	chr5	9523323	9523489	+	10.39910	NA	intron (NM_003966, intron 1 of 22)	intron (NM_003966, intron 1 of 22)	11961	NR_109935	101929338	Hs.675861	NR_109935	ENSG00000251370	CTD-2201E9.1	-	uncharacterized LOC101929338	ncRNA
19-PTNLD28-TUMOR_peak_100626	chr8	125858162	125858313	+	10.39811	NA	Intergenic	MER82|DNA|TcMar-Tigger	-96013	NR_027321	157381	Hs.638933	NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
19-PTNLD28-TUMOR_peak_56732	chr2	164872408	164872561	+	10.39811	NA	Intergenic	Intergenic	-279971	NM_018086	55137	Hs.593650	NM_018086		FIGN	-	fidgetin	protein-coding
19-PTNLD28-TUMOR_peak_83732	chr5	167743202	167743439	+	10.39749	NA	intron (NM_015238, intron 1 of 22)	intron (NM_015238, intron 1 of 22)	24255	NM_001161662	23286	Hs.484047	NM_015238	HPRD:10033	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_10267	chr1	223310843	223311005	+	10.39749	NA	intron (NM_003268, intron 2 of 5)	intron (NM_003268, intron 2 of 5)	5700	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_35554	chr15	102193235	102193621	+	10.39211	NA	promoter-TSS (NM_078474)	promoter-TSS (NM_078474)	-834	NM_025141	80213	Hs.288912	NM_025141	HPRD:16554	TM2D3	BLP2	TM2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_46926	chr19	6721906	6722057	+	10.39211	NA	Intergenic	L1MC|LINE|L1	-1319	NM_000064	718	Hs.529053	NM_000064	HPRD:00400	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement component 3	protein-coding
19-PTNLD28-TUMOR_peak_87359	chr6	40690423	40690545	+	10.38741	NA	Intergenic	MIR3|SINE|MIR	-135358	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_1440	chr1	23496249	23496402	+	10.38741	NA	promoter-TSS (NM_033631)	promoter-TSS (NM_033631)	-974	NM_033631	7798	Hs.257900	NM_033631	HPRD:03250	LUZP1	LUZP	leucine zipper protein 1	protein-coding
19-PTNLD28-TUMOR_peak_12025	chr10	11935107	11935446	+	10.38741	NA	intron (NR_038222, intron 1 of 5)	AluSx1|SINE|Alu	1433	NR_038222	219731	Hs.576787	NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4478	chr1	79085484	79086126	+	10.38741	NA	promoter-TSS (NM_006820)	promoter-TSS (NM_006820)	-283	NM_006820	10964	Hs.744918	NM_006820	HPRD:13728	IFI44L	C1orf29	interferon-induced protein 44-like	protein-coding
19-PTNLD28-TUMOR_peak_54624	chr2	103352688	103353003	+	10.38741	NA	intron (NM_032718, intron 1 of 5)	intron (NM_032718, intron 1 of 5)	492	NM_032718	84804	Hs.590898	NM_032718		MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_18872	chr11	61319213	61319354	+	10.38741	NA	intron (NM_001300773, intron 2 of 9)	intron (NM_001300773, intron 2 of 9)	29061	NM_004200	9066	Hs.131188	NM_004200		SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin VII	protein-coding
19-PTNLD28-TUMOR_peak_22012	chr11	127808945	127809091	+	10.38741	NA	Intergenic	LTR42|LTR|ERVL	583187	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_5730	chr1	115879969	115880441	+	10.38741	NA	intron (NM_002506, intron 1 of 2)	CpG	652	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_103544	chr9	68830578	68830813	+	10.38741	NA	Intergenic	Intergenic	104154	NR_034006	100132352	Hs.231861	NR_034006		LOC100132352	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90841	chr7	1560281	1560538	+	10.38741	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-9959	NM_002360	7975	Hs.520612	NM_002360	HPRD:02561	MAFK	NFE2U|P18	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K	protein-coding
19-PTNLD28-TUMOR_peak_62600	chr20	62259748	62259888	+	10.38364	NA	Intergenic	Intergenic	-1437	NM_012384	26205	Hs.473286	NM_012384	HPRD:16245	GMEB2	P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_76985	chr4	126236241	126236407	+	10.38301	NA	Intergenic	CpG	-1243	NM_001291303	79633	Hs.563205	NM_024582	HPRD:07637	FAT4	CDHF14|CDHR11|FAT-J|FATJ|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
19-PTNLD28-TUMOR_peak_54652	chr2	105854538	105854726	+	10.38213	NA	Intergenic	Intergenic	-3568	NM_007227	11250	Hs.590903	NM_007227	HPRD:05325	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
19-PTNLD28-TUMOR_peak_47914	chr19	17559023	17559204	+	10.38174	NA	exon (NM_001190844, exon 1 of 3)	exon (NM_001190844, exon 1 of 3)	263	NM_001190844	100130519	Hs.436603	NM_001190844	ENSG00000188051	TMEM221	-	transmembrane protein 221	protein-coding
19-PTNLD28-TUMOR_peak_58386	chr2	218853281	218853471	+	10.38174	NA	Intergenic	Intergenic	-44580	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_83134	chr5	149112178	149112418	+	10.37952	NA	intron (NM_133263, intron 1 of 11)	MIRc|SINE|MIR	2483	NM_133263	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_31808	chr14	94254781	94255538	+	10.37853	NA	promoter-TSS (NM_178013)	promoter-TSS (NM_178013)	-393	NM_178013	145270	Hs.432401	NM_178004	HPRD:17907	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
19-PTNLD28-TUMOR_peak_35941	chr16	3870162	3870350	+	10.37853	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	59865	NM_001079846	1387	Hs.459759	NM_004380	HPRD:02534	CREBBP	CBP|KAT3A|RSTS	CREB binding protein	protein-coding
19-PTNLD28-TUMOR_peak_42177	chr17	48053651	48053779	+	10.37853	NA	Intergenic	Intergenic	3585	NM_001934	1748	Hs.591167	NM_001934	HPRD:03553	DLX4	BP1|DLX7|DLX8|DLX9	distal-less homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_867	chr1	12852594	12852790	+	10.37853	NA	intron (NM_023013, intron 1 of 3)	AluSx|SINE|Alu	1146	NM_023013	65121	Hs.454859	NM_023013	HPRD:11272	PRAMEF1	-	PRAME family member 1	protein-coding
19-PTNLD28-TUMOR_peak_21449	chr11	117533076	117533283	+	10.37853	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	134797	NM_020693	57453	Hs.659513	NM_020693	HPRD:10921	DSCAML1	-	Down syndrome cell adhesion molecule like 1	protein-coding
19-PTNLD28-TUMOR_peak_84882	chr6	3370829	3371469	+	10.37853	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	74098	NR_104448	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_103131	chr9	40332407	40332510	+	10.37853	NA	Intergenic	CpG	-367833	NM_001083124	727830	Hs.632078	NM_001083124	ENSG00000147926	SPATA31A3	FAM75A3	SPATA31 subfamily A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_75106	chr4	42909543	42909668	+	10.37853	NA	intron (NM_001080476, intron 1 of 3)	ERV3-16A3_I-int|LTR|ERVL	14322	NM_001080476	389207	Hs.162559	NM_001080476	ENSG00000215203	GRXCR1	DFNB25|PPP1R88	glutaredoxin, cysteine rich 1	protein-coding
19-PTNLD28-TUMOR_peak_103500	chr9	67779566	67779694	+	10.37788	NA	intron (NR_121606, intron 1 of 2).2	intron (NR_121606, intron 1 of 2).2	507	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_3512	chr1	53018322	53018747	+	10.37788	NA	intron (NM_001009881, intron 1 of 29)	CpG	228	NM_001009881	23318	Hs.655407	NM_015269	HPRD:15700	ZCCHC11	PAPD3|TUT4	zinc finger, CCHC domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_6680	chr1	150336998	150337428	+	10.37770	NA	exon (NM_015203, exon 1 of 11)	exon (NM_015203, exon 1 of 11)	626	NM_001297674	23248	Hs.213666	NM_015203	ENSG00000163125	RPRD2	KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_13338	chr10	46626311	46626480	+	10.37292	NA	intron (NM_015605, intron 1 of 8)	intron (NM_015605, intron 1 of 8)	-6337	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_22933	chr12	8449620	8449717	+	10.37292	NA	Intergenic	MER91C|DNA|hAT-Tip100	-54126	NR_024254	653113	Hs.661749	NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102499	chr9	22395650	22395840	+	10.37292	NA	Intergenic	Intergenic	-51095	NM_022160	63951	Hs.371976	NM_022160		DMRTA1	DMO|DMRT4	DMRT-like family A1	protein-coding
19-PTNLD28-TUMOR_peak_36879	chr16	23955845	23955952	+	10.37292	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	108598	NM_212535	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_64875	chr22	26957841	26958141	+	10.37292	NA	intron (NM_003595, intron 1 of 6)	intron (NM_003595, intron 1 of 6)	3379	NM_001008566	8459	Hs.632768	NM_003595	HPRD:07217	TPST2	TANGO13B	tyrosylprotein sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_44684	chr18	12924234	12924444	+	10.37292	NA	Intergenic	Intergenic	-23644	NM_031216	81929	Hs.301048	NM_031216	HPRD:15319	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_91379	chr7	16955148	16955348	+	10.37292	NA	Intergenic	Intergenic	-33635	NM_176813	155465	Hs.100686	NM_176813	HPRD:16545	AGR3	AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3	protein-coding
19-PTNLD28-TUMOR_peak_47580	chr19	14032414	14032554	+	10.37292	NA	intron (NM_017721, intron 14 of 28)	MLT1J|LTR|ERVL-MaLR	15528	NM_017721	54862	Hs.269592	NM_017721	HPRD:08616	CC2D1A	FREUD-1|Freud-1/Aki1|MRT3	coiled-coil and C2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_30469	chr14	56317714	56317832	+	10.37292	NA	Intergenic	Intergenic	-54381	NR_026797	645687	Hs.569345	NR_026796		LINC00520	C14orf34	long intergenic non-protein coding RNA 520	ncRNA
19-PTNLD28-TUMOR_peak_61910	chr20	50036774	50036961	+	10.37292	NA	intron (NM_001258296, intron 9 of 10)	L1MC5|LINE|L1	32647	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	ncRNA
19-PTNLD28-TUMOR_peak_50735	chr2	443888	444013	+	10.37292	NA	Intergenic	Intergenic	-155642	NM_001002919	285016	Hs.355207	NM_001002919	HPRD:17344	FAM150B	PRO1097|RGPG542	family with sequence similarity 150, member B	protein-coding
19-PTNLD28-TUMOR_peak_85443	chr6	12845555	12845819	+	10.37292	NA	intron (NM_030948, intron 4 of 14)	intron (NM_030948, intron 4 of 14)	128650	NM_030948	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_20224	chr11	77757370	77757493	+	10.37292	NA	promoter-TSS (NM_001282406)	promoter-TSS (NM_001282406)	-194	NM_001282406	65987	Hs.709780	NM_023930	HPRD:13764	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_105161	chr9	109481432	109481570	+	10.37292	NA	Intergenic	L3|LINE|CR1	103162	NR_104145	100996590	Hs.147110	NR_104145	ENSG00000234229	LINC01505	-	long intergenic non-protein coding RNA 1505	ncRNA
19-PTNLD28-TUMOR_peak_66024	chr22	47068654	47068907	+	10.37292	NA	exon (NM_015124, exon 13 of 18)	exon (NM_015124, exon 13 of 18)	46122	NM_015124	23151	Hs.475150	NM_015124	HPRD:11107	GRAMD4	DIP|dA59H18.1|dJ439F8.1	GRAM domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_85941	chr6	24084359	24084453	+	10.37292	NA	Intergenic	L1PA3|LINE|L1	-42008	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_21155	chr11	111887622	111887956	+	10.37292	NA	intron (NM_001037954, intron 18 of 19)	intron (NM_001037954, intron 18 of 19)	-7749	NM_001931	1737	Hs.335551	NM_001931	HPRD:10578	DLAT	DLTA|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_77146	chr4	139629047	139629247	+	10.37292	NA	Intergenic	Intergenic	-307766	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_56342	chr2	152911109	152911389	+	10.37292	NA	intron (NM_001005746, intron 2 of 13)	L1MB7|LINE|L1	43986	NM_001005746	785	Hs.120725	NM_000726	HPRD:09057	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
19-PTNLD28-TUMOR_peak_59218	chr2	240821615	240821924	+	10.37292	NA	Intergenic	Intergenic	60742	NR_039949	100616417		NR_039949	miRBase:MI0017433	MIR4786	-	microRNA 4786	ncRNA
19-PTNLD28-TUMOR_peak_71777	chr3	152016430	152016708	+	10.37292	NA	promoter-TSS (NM_207297)	promoter-TSS (NM_207297)	-625	NM_207294	4154	Hs.201858	NM_021038	HPRD:07355	MBNL1	EXP|EXP35|EXP40|EXP42|MBNL	muscleblind-like splicing regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_36125	chr16	8754848	8755055	+	10.37292	NA	Intergenic	Intergenic	-13493	NM_020686	18	Hs.336768	NM_000663	HPRD:00661	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_1092	chr1	16847522	16847645	+	10.37292	NA	Intergenic	CpG	-27826	NR_037446	100500876		NR_037446	miRBase:MI0016076	MIR3675	-	microRNA 3675	ncRNA
19-PTNLD28-TUMOR_peak_103934	chr9	78769235	78769530	+	10.37292	NA	intron (NM_006200, intron 10 of 20)	intron (NM_006200, intron 10 of 20)	240062	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_65706	chr22	42093234	42093602	+	10.37292	NA	3' UTR (NM_001142964, exon 2 of 2)	3' UTR (NM_001142964, exon 2 of 2)	-2100	NM_152513	150365	Hs.116419	NM_152513	ENSG00000167077	MEI1	SPATA38	meiosis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_101962	chr9	2234381	2234715	+	10.37292	NA	Intergenic	Intergenic	76092	NM_001289400	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_106108	chr9	129183420	129183556	+	10.37292	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	-10705	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
19-PTNLD28-TUMOR_peak_9952	chr1	212091439	212091570	+	10.37292	NA	Intergenic	Intergenic	-87390	NM_014873	9926	Hs.744851	NM_014873	HPRD:14304	LPGAT1	FAM34A|FAM34A1|NET8	lysophosphatidylglycerol acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_89994	chr6	150848282	150848430	+	10.37292	NA	Intergenic	Intergenic	-72643	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_2106	chr1	32587050	32587227	+	10.37292	NA	intron (NM_012316, intron 1 of 13)	L2|LINE|L2	13494	NM_012316	23633	Hs.470588	NM_012316	HPRD:09465	KPNA6	IPOA7|KPNA7	karyopherin alpha 6 (importin alpha 7)	protein-coding
19-PTNLD28-TUMOR_peak_38425	chr16	68544126	68544287	+	10.37292	NA	Intergenic	CpG	-29455	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_67942	chr3	46759429	46759614	+	10.37292	NA	promoter-TSS (NM_013270)	promoter-TSS (NM_013270)	-148	NM_013270	29122	Hs.120365	NM_013270	HPRD:06405	PRSS50	CT20|TSP50	protease, serine, 50	protein-coding
19-PTNLD28-TUMOR_peak_70440	chr3	125636051	125636227	+	10.36934	NA	intron (NR_024251, intron 1 of 4)	intron (NR_024251, intron 1 of 4)	695	NR_024251	100125556	Hs.553949	NR_024250	ENSG00000171084	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64387	chr22	19935346	19935510	+	10.36789	NA	intron (NM_000754, intron 1 of 5)	LTR13|LTR|ERVK	-3032	NM_001135161	1312	Hs.370408	NM_000754	HPRD:00284	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_42128	chr17	47517653	47517812	+	10.36789	NA	Intergenic	Intergenic	21379	NR_110805	101927207	Hs.638402	NR_110805	ENSG00000249497	LOC101927207	-	uncharacterized LOC101927207	ncRNA
19-PTNLD28-TUMOR_peak_40162	chr17	9547948	9548119	+	10.36789	NA	promoter-TSS (NM_001267576)	promoter-TSS (NM_001267576)	-821	NM_153210	124739	Hs.709621	NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
19-PTNLD28-TUMOR_peak_12438	chr10	24544858	24545216	+	10.36637	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	-19577	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_21618	chr11	120003022	120003208	+	10.36637	NA	intron (NM_012101, intron 1 of 8)	intron (NM_012101, intron 1 of 8)	5748	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_21577	chr11	119238409	119238796	+	10.36637	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-3710	NM_171997	9099	Hs.524085	NM_004205	HPRD:05287	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_54748	chr2	109065043	109065351	+	10.36637	NA	promoter-TSS (NM_181453)	promoter-TSS (NM_181453)	-380	NR_028063	9648	Hs.436505	NM_181453	HPRD:11001	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_22877	chr12	7792629	7793072	+	10.36637	NA	Intergenic	LTR12C|LTR|ERV1	25652	NM_001644	339	Hs.560	NM_001644	HPRD:02531	APOBEC1	APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_64312	chr22	18927985	18928085	+	10.36637	NA	Intergenic	HERVK-int|LTR|ERVK	-3969	NM_016335	5625	Hs.517352	NM_016335	HPRD:08433	PRODH	HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6	proline dehydrogenase (oxidase) 1	protein-coding
19-PTNLD28-TUMOR_peak_60811	chr20	35203883	35204167	+	10.35845	NA	intron (NM_001199535, intron 1 of 4)	intron (NM_001199535, intron 1 of 4)	1068	NM_001199515	60436	Hs.632264	NM_021809	HPRD:06293	TGIF2	-	TGFB-induced factor homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_30762	chr14	64969347	64969457	+	10.35784	NA	intron (NM_006977, intron 1 of 2)	intron (NM_006977, intron 1 of 2)	1152	NM_006977	7597	Hs.654571	NM_006977		ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
19-PTNLD28-TUMOR_peak_55604	chr2	129151646	129151881	+	10.35782	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-75592	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_53577	chr2	74781140	74781329	+	10.35782	NA	promoter-TSS (NM_032603)	promoter-TSS (NM_032603)	-143	NM_001289164	84695	Hs.469045	NM_032603	HPRD:06200	LOXL3	LOXL	lysyl oxidase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_95876	chr7	140767619	140767796	+	10.35782	NA	Intergenic	L1HS|LINE|L1	-6325	NM_001195278	100507421	Hs.283851	NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
19-PTNLD28-TUMOR_peak_106213	chr9	130693065	130693240	+	10.35782	NA	promoter-TSS (NM_001135219)	promoter-TSS (NM_001135219)	-76	NM_001135219	138429	Hs.734928	NM_173492	HPRD:15139	PIP5KL1	PIPKH|bA203J24.5	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_104711	chr9	97463770	97463929	+	10.35523	NA	Intergenic	AluJb|SINE|Alu	-25102	NM_032823	84909	Hs.434253	NM_032823	HPRD:07476	C9orf3	AOPEP|AP-O|APO|C90RF3|ONPEP	chromosome 9 open reading frame 3	protein-coding
19-PTNLD28-TUMOR_peak_101335	chr8	139837038	139837314	+	10.35523	NA	intron (NM_152888, intron 6 of 64)	intron (NM_152888, intron 6 of 64)	89060	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_6865	chr1	152169394	152169618	+	10.35523	NA	Intergenic	SVA_C|Other|Other	27166	NM_001009931	388697	Hs.490162	NM_001009931	HPRD:17114	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
19-PTNLD28-TUMOR_peak_52608	chr2	47114431	47114563	+	10.35523	NA	Intergenic	Intergenic	28510	NM_139279	90411	Hs.662152	NM_139279	HPRD:09693	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
19-PTNLD28-TUMOR_peak_102216	chr9	14022250	14022558	+	10.35523	NA	Intergenic	Intergenic	94434	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
19-PTNLD28-TUMOR_peak_69617	chr3	107823152	107823587	+	10.35523	NA	Intergenic	Intergenic	-13434	NM_001777	961	Hs.446414	NM_001777	HPRD:03017	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
19-PTNLD28-TUMOR_peak_17431	chr11	16940225	16940361	+	10.35523	NA	intron (NM_175058, intron 3 of 22)	MER113A|DNA|hAT-Charlie	95670	NM_175058	144100	Hs.12332	NM_175058	HPRD:15142	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
19-PTNLD28-TUMOR_peak_61376	chr20	44591669	44591838	+	10.35523	NA	intron (NM_022095, intron 9 of 27)	MER91B|DNA|hAT-Tip100	9080	NM_022095	63925	Hs.174193	NM_022095	HPRD:11709	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
19-PTNLD28-TUMOR_peak_43762	chr17	76461110	76461216	+	10.35523	NA	intron (NM_173628, intron 56 of 80)	SVA_F|Other|Other	-19829	NR_102401	100996295	Hs.615304	NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11898	chr10	6836425	6836706	+	10.35523	NA	intron (NR_038291, intron 2 of 4)	intron (NR_038291, intron 2 of 4)	15005	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
19-PTNLD28-TUMOR_peak_103073	chr9	38682819	38683019	+	10.35523	NA	Intergenic	MER21C|LTR|ERVL	61834	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_19477	chr11	67125434	67125577	+	10.35441	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-4438	NM_021173	57804	Hs.523829	NM_021173		POLD4	POLDS|p12	polymerase (DNA-directed), delta 4, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_74248	chr4	7268796	7268972	+	10.35393	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	-43293	NR_039961	100616471		NR_039961		MIR4798	-	microRNA 4798	ncRNA
19-PTNLD28-TUMOR_peak_60557	chr20	31852141	31852528	+	10.35393	NA	Intergenic	ERVL-E-int|LTR|ERVL	-18607	NM_033197	92747	Hs.65551	NM_033197	HPRD:12740	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_15107	chr10	99299596	99299713	+	10.35393	NA	intron (NM_024954, intron 1 of 2)	intron (NM_024954, intron 1 of 2)	-32544	NM_001291218	26287	Hs.73708	NM_020349	HPRD:12460	ANKRD2	ARPP	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding
19-PTNLD28-TUMOR_peak_54436	chr2	99526066	99526215	+	10.35393	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26544	NM_207362	343990	Hs.469398	NM_207362	HPRD:14620	KIAA1211L	C2orf55	KIAA1211-like	protein-coding
19-PTNLD28-TUMOR_peak_64050	chr21	46829761	46830004	+	10.35187	NA	promoter-TSS (NR_052004)	promoter-TSS (NR_052004)	98	NR_052004	100874236	Hs.589901	NR_052004	ENSG00000224574	COL18A1-AS2	-	COL18A1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_36003	chr16	4442638	4442978	+	10.35187	NA	intron (NM_024535, intron 7 of 27)	intron (NM_024535, intron 7 of 27)	20959	NM_138440	114990	Hs.372579	NM_138440	HPRD:10587	VASN	SLITL2	vasorin	protein-coding
19-PTNLD28-TUMOR_peak_83283	chr5	151038591	151038755	+	10.34803	NA	Intergenic	Intergenic	-17833	NR_109873	101927096	Hs.571023	NR_109873	ENSG00000249035	CTB-113P19.1	-	uncharacterized LOC101927096	ncRNA
19-PTNLD28-TUMOR_peak_60412	chr20	30175383	30175775	+	10.34803	NA	Intergenic	CpG	-14513	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95594	chr7	135735230	135735492	+	10.34803	NA	Intergenic	Intergenic	-73157	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_12791	chr10	31873177	31873369	+	10.34803	NA	Intergenic	Intergenic	263209	NM_001174094	6935	Hs.124503	NM_030751	HPRD:01798	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_59371	chr20	294661	294862	+	10.34803	NA	Intergenic	Intergenic	11135	NR_109990	100507459	Hs.659689	NR_109990		NRSN2-AS1	-	NRSN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65732	chr22	42665663	42666250	+	10.34803	NA	non-coding (NR_036498, exon 1 of 2)	non-coding (NR_036498, exon 1 of 2)	197	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_253	chr1	2497632	2497860	+	10.34803	NA	promoter-TSS (NR_121638)	promoter-TSS (NR_121638)	-228	NR_121638	100996583	Hs.444114	NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
19-PTNLD28-TUMOR_peak_68739	chr3	63849038	63849582	+	10.34803	NA	promoter-TSS (NM_000333)	promoter-TSS (NM_000333)	152	NM_001285404	80145	Hs.288151	NM_025075	HPRD:17632	THOC7	NIF3L1BP1|fSAP24|hTREX30	THO complex 7 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_4850	chr1	92068975	92069273	+	10.34803	NA	Intergenic	MER45B|DNA|hAT-Tip100	102459	NM_001134420	8317	Hs.533573	NM_003503	HPRD:10345	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
19-PTNLD28-TUMOR_peak_11561	chr1	249120774	249120954	+	10.34803	NA	promoter-TSS (NM_030645)	promoter-TSS (NM_030645)	288	NR_036070	100422879		NR_036070	miRBase:MI0014140	MIR3124	-	microRNA 3124	ncRNA
19-PTNLD28-TUMOR_peak_92607	chr7	54826443	54826690	+	10.34743	NA	promoter-TSS (NR_110040)	promoter-TSS (NR_110040)	373	NM_014302	23480	Hs.488282	NM_014302	HPRD:15318	SEC61G	SSS1	Sec61 gamma subunit	protein-coding
19-PTNLD28-TUMOR_peak_2224	chr1	33772753	33773095	+	10.34743	NA	exon (NM_001080438, exon 5 of 5)	exon (NM_001080438, exon 5 of 5)	13775	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_66973	chr3	16555070	16555350	+	10.34743	NA	promoter-TSS (NM_015150)	promoter-TSS (NM_015150)	12	NM_015150	23180	Hs.98910	NM_015150	HPRD:17950	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
19-PTNLD28-TUMOR_peak_84207	chr5	175493358	175493533	+	10.34743	NA	intron (NM_001265615, intron 1 of 19)	MER68|LTR|ERVL	2733	NM_001265615	202134	Hs.368516	NM_001079529	ENSG00000182230	FAM153B	-	family with sequence similarity 153, member B	protein-coding
19-PTNLD28-TUMOR_peak_10595	chr1	228192107	228192212	+	10.34743	NA	Intergenic	Intergenic	-2564	NM_033131	89780	Hs.336930	NM_033131	HPRD:05897	WNT3A	-	wingless-type MMTV integration site family, member 3A	protein-coding
19-PTNLD28-TUMOR_peak_97080	chr8	9011064	9011158	+	10.34743	NA	Intergenic	SVA_F|Other|Other	-1959	NM_001201329	79660	Hs.458513	NM_024607	HPRD:17894	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1, regulatory subunit 3B	protein-coding
19-PTNLD28-TUMOR_peak_61684	chr20	48127431	48127640	+	10.34743	NA	intron (NM_000961, intron 9 of 9)	intron (NM_000961, intron 9 of 9)	-28354	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	potassium voltage-gated channel, Shab-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_25272	chr12	71439601	71439885	+	10.34743	NA	Intergenic	Intergenic	112036	NM_004616	7103	Hs.170563	NM_004616	HPRD:02865	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
19-PTNLD28-TUMOR_peak_12183	chr10	16482475	16482607	+	10.34648	NA	intron (NM_001001484, intron 2 of 5)	intron (NM_001001484, intron 2 of 5)	3599	NM_030664	9317	Hs.444321	NM_030664	HPRD:16061	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
19-PTNLD28-TUMOR_peak_55771	chr2	132426556	132426703	+	10.34648	NA	Intergenic	LTR4|LTR|ERV1	32031	NR_108087	101927994	Hs.635757	NR_108087	ENSG00000224559	LINC01087	-	long intergenic non-protein coding RNA 1087	ncRNA
19-PTNLD28-TUMOR_peak_6631	chr1	149824410	149824597	+	10.34233	NA	exon (NM_021059, exon 1 of 1).2	exon (NM_021059, exon 1 of 1).2	322	NM_001005464	333932	Hs.647745	NM_001005464		HIST2H3A	H3/n|H3/o	histone cluster 2, H3a	protein-coding
19-PTNLD28-TUMOR_peak_24325	chr12	52596248	52596525	+	10.34232	NA	Intergenic	Intergenic	8253	NM_001242696	283403	Hs.667179	NM_001242696		C12orf80	-	chromosome 12 open reading frame 80	protein-coding
19-PTNLD28-TUMOR_peak_29899	chr14	35800842	35801101	+	10.33870	NA	Intergenic	Intergenic	39448	NM_002791	5687	Hs.446260	NM_002791	HPRD:04171	PSMA6	IOTA|PROS27|p27K	proteasome (prosome, macropain) subunit, alpha type, 6	protein-coding
19-PTNLD28-TUMOR_peak_41827	chr17	43517452	43518022	+	10.33870	NA	intron (NR_027782, intron 8 of 10).2	MIRb|SINE|MIR	-7455	NM_174919	201176	Hs.205326	NM_174919	HPRD:12477	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
19-PTNLD28-TUMOR_peak_93336	chr7	74213180	74213298	+	10.33772	NA	intron (NM_173537, intron 15 of 15).2	AluJr|SINE|Alu	24930	NM_000265	653361	Hs.647047	NM_000265	ENSG00000158517	NCF1	NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
19-PTNLD28-TUMOR_peak_70920	chr3	133267095	133267231	+	10.33772	NA	Intergenic	Intergenic	-25271	NM_001134422	55573	Hs.518265	NM_017548	HPRD:13627	CDV3	H41	CDV3 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_37278	chr16	30817222	30817541	+	10.33772	NA	Intergenic	Intergenic	-18858	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
19-PTNLD28-TUMOR_peak_13607	chr10	52181164	52181271	+	10.33772	NA	intron (NM_147156, intron 6 of 10)	MER54B|LTR|ERVL	-172847	NM_001143974	56624	Hs.512645	NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	protein-coding
19-PTNLD28-TUMOR_peak_14014	chr10	70939928	70940107	+	10.33772	NA	promoter-TSS (NM_003171)	promoter-TSS (NM_003171)	24	NM_003171	6832	Hs.106469	NM_003171	HPRD:05493	SUPV3L1	SUV3	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_38039	chr16	57411184	57411416	+	10.33772	NA	intron (NM_002996, intron 1 of 2)	intron (NM_002996, intron 1 of 2)	4886	NM_002996	6376	Hs.531668	NM_002996	HPRD:03529	CX3CL1	ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin	chemokine (C-X3-C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_24144	chr12	49947449	49947570	+	10.33461	NA	intron (NM_012284, intron 10 of 14)	Kanga1a|DNA|TcMar-Tc2	12713	NM_001012300	10445	Hs.25313	NM_006337	HPRD:11298	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
19-PTNLD28-TUMOR_peak_48310	chr19	24243514	24243920	+	10.33461	NA	intron (NM_001278677, intron 3 of 5)	BSR/Beta|Satellite|Satellite	-26245	NM_001278664	9534	Hs.434406	NM_004876	HPRD:05304	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
19-PTNLD28-TUMOR_peak_46331	chr18	74689067	74689506	+	10.33461	NA	Intergenic	Intergenic	39769	NM_002385	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_66518	chr3	10206281	10206728	+	10.33461	NA	promoter-TSS (NM_001570)	promoter-TSS (NM_001570)	-59	NM_001570	3656	Hs.449207	NM_001570	HPRD:04491	IRAK2	IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_106185	chr9	130469130	130469316	+	10.33461	NA	promoter-TSS (NM_001012502)	promoter-TSS (NM_001012502)	-48	NM_001012502	286207	Hs.652519	NM_001012502	HPRD:16673	C9orf117	-	chromosome 9 open reading frame 117	protein-coding
19-PTNLD28-TUMOR_peak_1632	chr1	26232835	26233189	+	10.33461	NA	promoter-TSS (NM_203401)	promoter-TSS (NM_203401)	-19	NM_005563	3925	Hs.209983	NM_005563	HPRD:01047	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
19-PTNLD28-TUMOR_peak_42242	chr17	48509636	48509777	+	10.33366	NA	intron (NM_001288968, intron 2 of 16)	intron (NM_001288968, intron 2 of 16)	6187	NM_001288969	80221	Hs.288959	NM_025149	HPRD:13380	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_63863	chr21	44922462	44922588	+	10.33366	NA	Intergenic	Intergenic	-24422	NR_026863	114038	Hs.592161	NM_153752	HPRD:10770	LINC00313	C21orf84|NCRNA00313	long intergenic non-protein coding RNA 313	ncRNA
19-PTNLD28-TUMOR_peak_21963	chr11	126347862	126348201	+	10.33366	NA	intron (NM_001301097, intron 4 of 15)	L2b|LINE|L2	71954	NM_001254759	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_28338	chr13	53421140	53421329	+	10.33366	NA	exon (NM_002590, exon 1 of 3)	exon (NM_002590, exon 1 of 3)	1541	NM_032949	5100	Hs.19492	NM_002590	HPRD:04660	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
19-PTNLD28-TUMOR_peak_68368	chr3	52900537	52900794	+	10.33366	NA	intron (NM_198563, intron 1 of 8)	intron (NM_198563, intron 1 of 8)	-20097	NR_107031	102465866		NR_107031		MIR8064	hsa-mir-8064	microRNA 8064	ncRNA
19-PTNLD28-TUMOR_peak_39434	chr16	89282769	89283104	+	10.33366	NA	Intergenic	LTR55|LTR|ERV	-1175	NR_037705	197320	Hs.647385	NM_182531	HPRD:08111	ZNF778	-	zinc finger protein 778	protein-coding
19-PTNLD28-TUMOR_peak_52614	chr2	47143403	47143548	+	10.32592	NA	promoter-TSS (NM_139279)	promoter-TSS (NM_139279)	207	NM_001288953	57217	Hs.370603	NM_020458	HPRD:18239	TTC7A	MINAT|TTC7	tetratricopeptide repeat domain 7A	protein-coding
19-PTNLD28-TUMOR_peak_79922	chr5	54599304	54599412	+	10.32592	NA	intron (NM_019030, intron 1 of 26)	L2a|LINE|L2	4163	NM_019030	54505	Hs.593268	NM_019030	HPRD:10882	DHX29	DDX29	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding
19-PTNLD28-TUMOR_peak_44657	chr18	12404047	12404166	+	10.32592	NA	Intergenic	AluJo|SINE|Alu	-3789	NM_001142405	10650	Hs.514718	NM_006553	HPRD:09981	SLMO1	C18orf43|HFL-EDDG1|PRELID3A	slowmo homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_74389	chr4	8913641	8913937	+	10.32592	NA	Intergenic	Intergenic	-37688	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_24687	chr12	56651872	56652548	+	10.32584	NA	promoter-TSS (NM_173595)	promoter-TSS (NM_173595)	-67	NM_173595	283373	Hs.524506	NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
19-PTNLD28-TUMOR_peak_38580	chr16	70915579	70915697	+	10.32584	NA	intron (NM_001270974, intron 60 of 85)	LTR84b|LTR|ERVL	-80577	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_39615	chr17	1388294	1388465	+	10.32348	NA	intron (NM_001080779, intron 1 of 31)	intron (NM_001080779, intron 1 of 31)	672	NM_001080950	4641	Hs.286226	NM_033375	HPRD:09411	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
19-PTNLD28-TUMOR_peak_82218	chr5	133563014	133563163	+	10.31961	NA	Intergenic	Intergenic	-1138	NM_002715	5515	Hs.105818	NM_002715		PPP2CA	PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2, catalytic subunit, alpha isozyme	protein-coding
19-PTNLD28-TUMOR_peak_50707	chr2	44931	45057	+	10.31898	NA	intron (NM_001077710, intron 1 of 1)	intron (NM_001077710, intron 1 of 1)	1594	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_41838	chr17	43663261	43663501	+	10.31898	NA	Intergenic	CpG	16367	NR_026901	644172	Hs.448859	NR_026901		LOC644172	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_63129	chr21	32723887	32723984	+	10.31821	NA	intron (NM_003253, intron 2 of 28)	intron (NM_003253, intron 2 of 28)	207355	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_43820	chr17	77269023	77269235	+	10.31631	NA	intron (NM_001082575, intron 3 of 14)	intron (NM_001082575, intron 3 of 14)	198110	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
19-PTNLD28-TUMOR_peak_109030	chrX	103151986	103152431	+	10.31631	NA	intron (NR_031657, intron 1 of 1).2	L1PA2|LINE|L1	-64992	NM_194324	286527	Hs.56145	NM_194324	HPRD:17546	TMSB15B	Tbeta15b	thymosin beta 15B	protein-coding
19-PTNLD28-TUMOR_peak_63335	chr21	36179961	36180070	+	10.31631	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	61893	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	LINC01426	-	long intergenic non-protein coding RNA 1426	ncRNA
19-PTNLD28-TUMOR_peak_25685	chr12	96230066	96230178	+	10.31631	NA	Intergenic	Intergenic	-22587	NM_003095	6636	Hs.105465	NM_003095		SNRPF	SMF|Sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding
19-PTNLD28-TUMOR_peak_46755	chr19	3785237	3785396	+	10.31631	NA	intron (NM_139355, intron 1 of 13)	intron (NM_139355, intron 1 of 13)	1099	NM_139355	4145	Hs.631845	NM_002378	HPRD:02496	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_6308	chr1	145427546	145427800	+	10.31631	NA	intron (NM_001039703, intron 68 of 85)	intron (NM_001039703, intron 68 of 85)	-10765	NM_006472	10628	Hs.533977	NM_006472	HPRD:05964	TXNIP	EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_77001	chr4	128508200	128508354	+	10.31631	NA	Intergenic	L1PA15-16|LINE|L1	-45810	NM_015693	27152	Hs.391481	NM_015693		INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
19-PTNLD28-TUMOR_peak_43277	chr17	71622677	71622866	+	10.31631	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	17456	NM_001144952	54549	Hs.435719	NM_019064	HPRD:06239	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_24506	chr12	54151043	54151184	+	10.31631	NA	promoter-TSS (NR_104332)	promoter-TSS (NR_104332)	-295	NR_104332	102216268	Hs.742074	NR_104332		CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
19-PTNLD28-TUMOR_peak_58695	chr2	228092840	228093279	+	10.31631	NA	intron (NR_102371, intron 11 of 13)	intron (NR_102371, intron 11 of 13)	63778	NM_000091	1285	Hs.570065	NM_000091	HPRD:00354	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
19-PTNLD28-TUMOR_peak_56055	chr2	139585110	139585226	+	10.31631	NA	Intergenic	Intergenic	-47357	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_51506	chr2	21866093	21866292	+	10.31631	NA	Intergenic	Intergenic	67332	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LOC645949	-	uncharacterized LOC645949	ncRNA
19-PTNLD28-TUMOR_peak_103370	chr9	46754828	46755080	+	10.31631	NA	Intergenic	TAR1|Satellite|telo	-8837	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_91237	chr7	7241209	7241778	+	10.31631	NA	intron (NM_020156, intron 1 of 3)	L1PA5|LINE|L1	19247	NM_020156	56913	Hs.239666	NM_020156	HPRD:16631	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_20701	chr11	95564389	95564660	+	10.31631	NA	3' UTR (NM_014679, exon 11 of 11)	3' UTR (NM_014679, exon 11 of 11)	40899	NM_001243777	9702	Hs.101014	NM_014679	HPRD:16261	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57kDa	protein-coding
19-PTNLD28-TUMOR_peak_10261	chr1	223280251	223280360	+	10.31631	NA	Intergenic	Tigger12A|DNA|TcMar-Tigger	36319	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_64818	chr22	25422120	25422270	+	10.31631	NA	Intergenic	Intergenic	-1746	NM_001145206	85379	Hs.419171	NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
19-PTNLD28-TUMOR_peak_105191	chr9	110114047	110114237	+	10.31631	NA	Intergenic	Intergenic	67092	NM_001244713	5887	Hs.521640	NM_002874	HPRD:06772	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_88977	chr6	107252437	107252622	+	10.31631	NA	Intergenic	Intergenic	-17229	NR_033557	100422737	Hs.634681	NR_033557	ENSG00000235142	LOC100422737	-	uncharacterized LOC100422737	ncRNA
19-PTNLD28-TUMOR_peak_87400	chr6	41159455	41159561	+	10.31631	NA	3' UTR (NM_024807, exon 5 of 5)	3' UTR (NM_024807, exon 5 of 5)	9417	NM_024807	79865	Hs.164797	NM_024807	HPRD:11646	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells-like 2	protein-coding
19-PTNLD28-TUMOR_peak_103984	chr9	79541259	79541431	+	10.31631	NA	Intergenic	MER58B|DNA|hAT-Charlie	-20342	NM_015225	158471	Hs.262857	NM_015225	HPRD:12970	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_13288	chr10	45443287	45443611	+	10.31631	NA	intron (NR_033842, intron 1 of 7)	intron (NR_033842, intron 1 of 7)	11688	NR_033842	220980	Hs.568801	NR_033842	ENSG00000224812	TMEM72-AS1	-	TMEM72 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88621	chr6	86714232	86714340	+	10.31631	NA	Intergenic	L1HS|LINE|L1	-325835	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_37777	chr16	50636657	50636817	+	10.31631	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	54496	NM_033119	85407	Hs.187578	NM_033119		NKD1	Naked1	naked cuticle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_52307	chr2	40716552	40716800	+	10.31631	NA	intron (NM_001112802, intron 1 of 7)	intron (NM_001112802, intron 1 of 7)	22899	NM_001112802	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_107826	chrX	24168351	24168777	+	10.31156	NA	promoter-TSS (NR_046657)	promoter-TSS (NR_046657)	710	NM_003410	7543	Hs.336681	NM_003410	HPRD:02445	ZFX	ZNF926	zinc finger protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_74471	chr4	9999686	9999789	+	10.31156	NA	intron (NM_001001290, intron 3 of 12)	intron (NM_001001290, intron 3 of 12)	23377	NM_020041	56606	Hs.656895	NM_020041	HPRD:05848	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding
19-PTNLD28-TUMOR_peak_80973	chr5	81119117	81119450	+	10.31156	NA	Intergenic	AluSx|SINE|Alu	-72211	NM_001256736	23635	Hs.102735	NM_012446		SSBP2	HSPC116|SOSS-B2	single-stranded DNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_87019	chr6	35455899	35456023	+	10.31122	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	8900	NM_003214	7005	Hs.485205	NM_003214	HPRD:04411	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_84037	chr5	172411802	172411997	+	10.30922	NA	intron (NM_003945, intron 1 of 3)	L2c|LINE|L2	1136	NM_003945	8992	Hs.484188	NM_003945		ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1	protein-coding
19-PTNLD28-TUMOR_peak_14003	chr10	70716748	70717080	+	10.30922	NA	intron (NM_001256910, intron 1 of 14)	intron (NM_001256910, intron 1 of 14)	718	NM_001256910	9188	Hs.223141	NM_004728	HPRD:05895	DDX21	GUA|GURDB|RH-II/GU|RH-II/GuA	DEAD (Asp-Glu-Ala-Asp) box helicase 21	protein-coding
19-PTNLD28-TUMOR_peak_39877	chr17	5341206	5341382	+	10.30867	NA	intron (NM_001212, intron 2 of 5)	intron (NM_001212, intron 2 of 5)	1177	NM_001212	708	Hs.555866	NM_001212	HPRD:03168	C1QBP	GC1QBP|HABP1|SF2p32|gC1Q-R|gC1qR|p32	complement component 1, q subcomponent binding protein	protein-coding
19-PTNLD28-TUMOR_peak_108165	chrX	47124040	47124712	+	10.30867	NA	Intergenic	Intergenic	32062	NM_004651	8237	Hs.171501	NM_004651	HPRD:02081	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_34135	chr15	67813898	67814030	+	10.30867	NA	promoter-TSS (NR_040056)	promoter-TSS (NR_040056)	218	NR_040054	100506686	Hs.656245	NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_91195	chr7	6745846	6746270	+	10.30867	NA	intron (NM_006956, intron 1 of 5)	CpG	508	NM_006956	7559	Hs.431471	NM_006956	HPRD:11835	ZNF12	GIOT-3|HZF11|KOX3|ZNF325	zinc finger protein 12	protein-coding
19-PTNLD28-TUMOR_peak_104484	chr9	92233012	92233111	+	10.30867	NA	Intergenic	Intergenic	13134	NM_006705	10912	Hs.9701	NM_006705	HPRD:05383	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA-damage-inducible, gamma	protein-coding
19-PTNLD28-TUMOR_peak_21570	chr11	119192451	119192560	+	10.30867	NA	Intergenic	Intergenic	-4665	NM_006500	4162	Hs.599039	NM_006500	HPRD:01120	MCAM	CD146|MUC18	melanoma cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_108351	chrX	51927957	51928111	+	10.30867	NA	5' UTR (NM_001272062, exon 1 of 13)	5' UTR (NM_001272062, exon 1 of 13)	115	NM_001272063	728239	Hs.522650	NM_001098800	ENSG00000154545	MAGED4	MAGE-E1|MAGE1|MAGEE1	melanoma antigen family D, 4	protein-coding
19-PTNLD28-TUMOR_peak_84011	chr5	172261065	172261296	+	10.30867	NA	promoter-TSS (NM_001031711)	promoter-TSS (NM_001031711)	-43	NM_001031711	57222	Hs.509163	NM_020462	HPRD:13836	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
19-PTNLD28-TUMOR_peak_101561	chr8	143838714	143838866	+	10.30867	NA	Intergenic	Intergenic	-4838	NM_205545	137797	Hs.441280	NM_205545	HPRD:14334	LYPD2	LYPDC2|UNQ430	LY6/PLAUR domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24413	chr12	53278720	53278894	+	10.30867	NA	Intergenic	Intergenic	20061	NM_002273	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_33538	chr15	50646261	50646448	+	10.30867	NA	promoter-TSS (NR_024490)	promoter-TSS (NR_024490)	-17	NR_024490	100129387	Hs.659360	NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24683	chr12	56583742	56584199	+	10.30780	NA	promoter-TSS (NM_003075)	promoter-TSS (NM_003075)	-619	NM_003075	6601	Hs.236030	NM_003075	HPRD:03437	SMARCC2	BAF170|CRACC2|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding
19-PTNLD28-TUMOR_peak_98156	chr8	37000753	37000913	+	10.30780	NA	Intergenic	Intergenic	350598	NR_121620	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_55345	chr2	121155734	121155895	+	10.30720	NA	Intergenic	L2c|LINE|L2	52095	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_72924	chr3	186150033	186150221	+	10.30606	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	61323	NR_033844	253573	Hs.97386	NR_033844	ENSG00000224406	LOC253573	-	uncharacterized LOC253573	ncRNA
19-PTNLD28-TUMOR_peak_81397	chr5	103080567	103080699	+	10.30606	NA	Intergenic	AluJr|SINE|Alu	-182131	NM_031438	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_30076	chr14	45180073	45180216	+	10.30606	NA	Intergenic	L1HS|LINE|L1	-186363	NM_001017923	122525	Hs.82098	NM_001017923	HPRD:18544	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
19-PTNLD28-TUMOR_peak_52925	chr2	59881892	59882150	+	10.30606	NA	Intergenic	Intergenic	437178	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LOC101927285	-	uncharacterized LOC101927285	ncRNA
19-PTNLD28-TUMOR_peak_98436	chr8	41962592	41962715	+	10.30606	NA	Intergenic	Intergenic	-47811	NM_001134296	10947	Hs.654529	NM_006803	HPRD:09801	AP3M2	AP47B|CLA20|P47B	adaptor-related protein complex 3, mu 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_77264	chr4	141164479	141164717	+	10.30606	NA	Intergenic	Intergenic	-13842	NM_032547	60592	Hs.480815	NM_032547	HPRD:18027	SCOC	SCOCO	short coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_28478	chr13	75017936	75018089	+	10.30606	NA	Intergenic	Intergenic	24702	NR_047005	100874151	Hs.564552	NR_047005	ENSG00000226240	LINC00381	-	long intergenic non-protein coding RNA 381	ncRNA
19-PTNLD28-TUMOR_peak_33414	chr15	45275013	45275296	+	10.30606	NA	Intergenic	Intergenic	26254	NM_152448	145645	Hs.567701	NM_152448	HPRD:17528	C15orf43	-	chromosome 15 open reading frame 43	protein-coding
19-PTNLD28-TUMOR_peak_23514	chr12	27425257	27425822	+	10.30606	NA	intron (NM_015000, intron 1 of 13)	intron (NM_015000, intron 1 of 13)	28461	NM_015000	23012	Hs.184523	NM_015000	HPRD:10256	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
19-PTNLD28-TUMOR_peak_57452	chr2	191247716	191247882	+	10.30606	NA	Intergenic	Intergenic	-25282	NM_017694	54842	Hs.418581	NM_017694	HPRD:13369	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_94196	chr7	98871902	98872066	+	10.30606	NA	intron (NR_002147, intron 1 of 15)	intron (NR_002147, intron 1 of 15)	1060	NR_002147	84176	Hs.621401	NR_002147	ENSG00000002079	MYH16	MHC20|MYH16P|MYH5	myosin, heavy chain 16 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15713	chr10	115281001	115281157	+	10.30606	NA	Intergenic	Intergenic	-29511	NM_001177660	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_32293	chr14	105234846	105235096	+	10.30606	NA	TTS (NM_005163)	TTS (NM_005163)	15501	NM_021709	10572	Hs.112058	NM_006427	HPRD:16124	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1, apoptosis-inducing factor	protein-coding
19-PTNLD28-TUMOR_peak_62422	chr20	58410970	58411084	+	10.30606	NA	intron (NM_001281507, intron 8 of 12)	intron (NM_001281507, intron 8 of 12)	96182	NM_014258	10388	Hs.202676	NM_014258	HPRD:06822	SYCP2	SCP2	synaptonemal complex protein 2	protein-coding
19-PTNLD28-TUMOR_peak_90366	chr6	160398575	160398909	+	10.30606	NA	intron (NM_000876, intron 1 of 47)	MIRb|SINE|MIR	8611	NM_000876	3482	Hs.487062	NM_000876	HPRD:00928	IGF2R	CD222|CIMPR|M6P-R|MPR1|MPRI	insulin-like growth factor 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_87468	chr6	41978462	41978573	+	10.30606	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	38115	NM_001136126	896	Hs.534307	NM_001760	HPRD:00452	CCND3	-	cyclin D3	protein-coding
19-PTNLD28-TUMOR_peak_68256	chr3	50708905	50709018	+	10.30606	NA	Intergenic	Intergenic	-3550	NR_039950	100616138		NR_039950	miRBase:MI0017434	MIR4787	-	microRNA 4787	ncRNA
19-PTNLD28-TUMOR_peak_49224	chr19	42748949	42749130	+	10.30392	NA	Intergenic	CpG	-2303	NM_019884	2931	Hs.466828	NM_019884	HPRD:06002	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_105050	chr9	104239611	104239754	+	10.30119	NA	intron (NM_032342, intron 1 of 1)	intron (NM_032342, intron 1 of 1)	8078	NR_121575	101928470	Hs.656088	NR_121573	ENSG00000225376	TMEM246-AS1	-	TMEM246 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72922	chr3	186135702	186135911	+	10.30119	NA	Intergenic	Intergenic	-55783	NM_001080744	1608	Hs.683449	NM_001346	HPRD:03510	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase, gamma 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_2080	chr1	32254932	32255043	+	10.30119	NA	Intergenic	Intergenic	-25323	NM_001294335	576	Hs.524138	NM_001703	HPRD:04063	BAI2	-	brain-specific angiogenesis inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_73255	chr3	192127991	192128224	+	10.30119	NA	intron (NM_004113, intron 2 of 5)	CT-rich|Low_complexity|Low_complexity	-1269	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_98433	chr8	41908368	41908924	+	10.30119	NA	intron (NM_001099413, intron 1 of 17)	CpG	859	NM_006766	7994	Hs.491577	NM_006766	HPRD:03244	KAT6A	MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220	K(lysine) acetyltransferase 6A	protein-coding
19-PTNLD28-TUMOR_peak_82079	chr5	131590362	131590576	+	10.30119	NA	Intergenic	Intergenic	-2882	NM_001131027	8572	Hs.424312	NM_003687	HPRD:04571	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
19-PTNLD28-TUMOR_peak_103501	chr9	67780266	67780583	+	10.30023	NA	intron (NR_121606, intron 2 of 2).2	intron (NR_121606, intron 2 of 2).2	1301	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_96090	chr7	143886550	143886654	+	10.30023	NA	intron (NM_001003702, intron 1 of 1)	intron (NM_001003702, intron 1 of 1)	6054	NM_198495	100128553	Hs.645204	NM_198495	ENSG00000225932	CTAGE4	cTAGE-4	CTAGE family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_12313	chr10	21604440	21604579	+	10.29849	NA	Intergenic	AluJr|SINE|Alu	141278	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44099	chr17	80346100	80346586	+	10.29849	NA	TTS (NR_033265)	TTS (NR_033265)	14142	NM_018949	2837	Hs.192720	NM_018949	HPRD:02938	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_19831	chr11	71725386	71725732	+	10.29794	NA	non-coding (NR_104178, exon 1 of 4)	non-coding (NR_104178, exon 1 of 4)	222	NR_104178	100128494	Hs.713607	NR_104178		LOC100128494	-	uncharacterized LOC100128494	ncRNA
19-PTNLD28-TUMOR_peak_4319	chr1	70877215	70877379	+	10.29794	NA	intron (NM_001190463, intron 1 of 10)	intron (NM_001190463, intron 1 of 10)	396	NM_001902	1491	Hs.19904	NM_001902	HPRD:09633	CTH	-	cystathionine gamma-lyase	protein-coding
19-PTNLD28-TUMOR_peak_86201	chr6	27099678	27099791	+	10.29602	NA	TTS (NM_021058)	TTS (NM_021058)	841	NM_021058	8970	Hs.591807	NM_021058		HIST1H2BJ	H2B/r|H2BFR|H2BJ	histone cluster 1, H2bj	protein-coding
19-PTNLD28-TUMOR_peak_21431	chr11	117171493	117171836	+	10.29108	NA	intron (NM_138972, intron 1 of 8)	L2b|LINE|L2	-5278	NM_001207049	23621	Hs.504003	NM_012104	HPRD:07255	BACE1	ASP2|BACE|HSPC104	beta-site APP-cleaving enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_95842	chr7	140290977	140291313	+	10.29108	NA	intron (NM_015689, intron 1 of 17)	intron (NM_015689, intron 1 of 17)	11197	NM_015689	27147	Hs.6385	NM_015689	HPRD:17210	DENND2A	FAM31D|KIAA1277	DENN/MADD domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_28374	chr13	57746039	57746238	+	10.29108	NA	Intergenic	L1MC3|LINE|L1	4807	NM_001130406	729246	Hs.525056	NM_001130406	ENSG00000227151	PRR20D	-	proline rich 20D	protein-coding
19-PTNLD28-TUMOR_peak_11305	chr1	241774447	241774602	+	10.29108	NA	intron (NM_014322, intron 1 of 3)	intron (NM_014322, intron 1 of 3)	24708	NM_001821	1122	Hs.654545	NM_001821	HPRD:00341	CHML	REP2	choroideremia-like (Rab escort protein 2)	protein-coding
19-PTNLD28-TUMOR_peak_68105	chr3	49208516	49208765	+	10.29108	NA	promoter-TSS (NM_173546)	promoter-TSS (NM_173546)	-378	NM_173546	200942	Hs.13781	NM_173546	HPRD:14598	KLHDC8B	-	kelch domain containing 8B	protein-coding
19-PTNLD28-TUMOR_peak_17170	chr11	11629336	11629703	+	10.29108	NA	intron (NM_198516, intron 1 of 10)	intron (NM_198516, intron 1 of 10)	14042	NM_198516	374378	Hs.655152	NM_198516	HPRD:13564	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
19-PTNLD28-TUMOR_peak_21764	chr11	122852631	122852744	+	10.29108	NA	promoter-TSS (NM_001098169)	promoter-TSS (NM_001098169)	-308	NM_001098169	390259	Hs.449687	NM_001098169	ENSG00000188909	BSX	BSX1	brain-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_25008	chr12	65174283	65174597	+	10.29108	NA	Intergenic	CpG	-21214	NM_002076	2799	Hs.334534	NM_002076	HPRD:09637	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_5772	chr1	116372056	116372151	+	10.29108	NA	Intergenic	Intergenic	11230	NM_001111061	4808	Hs.46296	NM_005599	HPRD:01213	NHLH2	HEN2|NSCL2|bHLHa34	nescient helix loop helix 2	protein-coding
19-PTNLD28-TUMOR_peak_7280	chr1	156122501	156122774	+	10.28521	NA	promoter-TSS (NM_001193300)	promoter-TSS (NM_001193300)	-685	NM_022367	64218	Hs.408846	NM_022367	HPRD:09528	SEMA4A	CORD10|RP35|SEMAB|SEMB	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding
19-PTNLD28-TUMOR_peak_54193	chr2	95722716	95722935	+	10.28521	NA	Intergenic	Intergenic	31425	NM_022438	4118	Hs.80395	NM_002371	HPRD:01789	MAL	-	mal, T-cell differentiation protein	protein-coding
19-PTNLD28-TUMOR_peak_24648	chr12	56368126	56368304	+	10.28022	NA	intron (NM_001252037, intron 1 of 4)	intron (NM_001252037, intron 1 of 4)	420	NM_001252037	5869	Hs.157659	NM_002868	HPRD:01544	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_24717	chr12	57028087	57028221	+	10.27899	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	2009	NM_013449	11176	Hs.314263	NM_013449	HPRD:10417	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain, 2A	protein-coding
19-PTNLD28-TUMOR_peak_63688	chr21	43127517	43127662	+	10.27792	NA	Intergenic	HAL1|LINE|L1	8346	NR_027272	150135	Hs.350679	NM_152506	HPRD:10741	LINC00479	C21orf129	long intergenic non-protein coding RNA 479	ncRNA
19-PTNLD28-TUMOR_peak_77212	chr4	140587946	140588097	+	10.27777	NA	intron (NM_001204367, intron 1 of 4)	intron (NM_001204367, intron 1 of 4)	1099	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_74239	chr4	7194133	7194270	+	10.27617	NA	promoter-TSS (NM_020777)	promoter-TSS (NM_020777)	-173	NM_020777	57537	Hs.479099	NM_020777	HPRD:12099	SORCS2	-	sortilin-related VPS10 domain containing receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_7262	chr1	156036253	156036353	+	10.27617	NA	intron (NM_020387, intron 2 of 4)	intron (NM_020387, intron 2 of 4)	5337	NM_020387	57111	Hs.632469	NM_020387	HPRD:06698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_14415	chr10	77292366	77292538	+	10.27617	NA	Intergenic	Intergenic	123537	NR_110304	101929234	Hs.694695	NR_110304	ENSG00000272692	LOC101929234	-	uncharacterized LOC101929234	ncRNA
19-PTNLD28-TUMOR_peak_76833	chr4	121844124	121844382	+	10.27617	NA	promoter-TSS (NM_018699)	promoter-TSS (NM_018699)	-232	NM_001300824	11107	Hs.666782	NM_018699	HPRD:17902	PRDM5	BCS2|PFM2	PR domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_62376	chr20	57427891	57427990	+	10.27617	NA	promoter-TSS (NM_080425)	promoter-TSS (NM_080425)	-96	NM_080425	2778	Hs.125898	NM_000516	HPRD:00761	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH	GNAS complex locus	protein-coding
19-PTNLD28-TUMOR_peak_64143	chr21_gl000210_random	11594	11694	+	10.27617	NA	NA	MIR|SINE|MIR	NA	NA								
19-PTNLD28-TUMOR_peak_50416	chr19	56143871	56144032	+	10.27422	NA	Intergenic	Intergenic	-8010	NM_203374	147808	Hs.53996	NM_203374	HPRD:14076	ZNF784	-	zinc finger protein 784	protein-coding
19-PTNLD28-TUMOR_peak_34999	chr15	85458319	85458511	+	10.27054	NA	intron (NM_001287761, intron 8 of 14)	intron (NM_001287761, intron 8 of 14)	30523	NM_001287762	9154	Hs.459187	NM_004213	HPRD:07068	SLC28A1	CNT1|HCNT1	solute carrier family 28 (concentrative nucleoside transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_70377	chr3	124848493	124848687	+	10.27054	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	21806	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_2827	chr1	41837570	41837884	+	10.27054	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	10124	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_39971	chr17	7259449	7259595	+	10.27054	NA	exon (NM_198154, exon 5 of 7)	exon (NM_198154, exon 5 of 7)	1025	NM_198154	339168	Hs.259432	NM_198154	HPRD:14165	TMEM95	UNQ9390	transmembrane protein 95	protein-coding
19-PTNLD28-TUMOR_peak_8467	chr1	178579871	178580066	+	10.27054	NA	Intergenic	LTR8|LTR|ERV1	-66916	NR_039622	100616328		NR_039622	miRBase:MI0016763	MIR4424	-	microRNA 4424	ncRNA
19-PTNLD28-TUMOR_peak_4793	chr1	90352987	90353121	+	10.27054	NA	intron (NM_001134479, intron 2 of 2)	L3|LINE|CR1	65574	NM_018103	55144	Hs.482087	NM_018103	HPRD:11287	LRRC8D	LRRC5	leucine rich repeat containing 8 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_47933	chr19	17728090	17728361	+	10.26962	NA	intron (NM_001080421, intron 39 of 41)	intron (NM_001080421, intron 39 of 41)	61714	NM_024656	79709	Hs.418795	NM_024656	HPRD:07986	COLGALT1	GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_53445	chr2	72377353	72377735	+	10.26962	NA	Intergenic	Intergenic	-2553	NM_019885	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_31092	chr14	70463050	70463157	+	10.26962	NA	intron (NM_001034852, intron 7 of 11)	MIR|SINE|MIR	83831	NM_182936	6547	Hs.337696	NM_033262	HPRD:09723	SLC8A3	NCX3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_50111	chr19	52674798	52675023	+	10.26962	NA	promoter-TSS (NM_001102657)	promoter-TSS (NM_001102657)	-14	NM_001102657	162962	Hs.631584	NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
19-PTNLD28-TUMOR_peak_91705	chr7	26048086	26048306	+	10.26962	NA	Intergenic	MIR|SINE|MIR	-58590	NR_029597	406940		NR_029597	miRBase:MI0000253	MIR148A	MIRN148|MIRN148A|hsa-mir-148	microRNA 148a	ncRNA
19-PTNLD28-TUMOR_peak_33545	chr15	50978340	50978571	+	10.26962	NA	intron (NM_001301212, intron 1 of 38)	CpG	557	NM_017672	54822	Hs.512894	NM_017672	HPRD:10418	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding
19-PTNLD28-TUMOR_peak_25854	chr12	102868287	102868492	+	10.26962	NA	intron (NM_001111285, intron 2 of 3)	intron (NM_001111285, intron 2 of 3)	4040	NM_001111284	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_30815	chr14	65363110	65363378	+	10.26962	NA	Intergenic	SVA_E|Other|Other	-17835	NM_001204064	91612	Hs.731537	NM_145165	HPRD:12262	CHURC1	C14orf52|chch	churchill domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_84738	chr6	1604703	1604844	+	10.26873	NA	promoter-TSS (NR_125804)	promoter-TSS (NR_125804)	-993	NR_125804	101927703	Hs.607964	NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_50478	chr19	57348972	57349274	+	10.26377	NA	intron (NM_001146326, intron 1 of 11)	intron (NM_001146326, intron 1 of 11)	2971	NM_001146185	5178	Hs.731875	NM_006210	HPRD:03285	PEG3	PW1|ZKSCAN22|ZNF904|ZSCAN24	paternally expressed 3	protein-coding
19-PTNLD28-TUMOR_peak_70201	chr3	122921095	122921257	+	10.26100	NA	intron (NM_012430, intron 1 of 6)	intron (NM_012430, intron 1 of 6)	402	NM_012430	26984	Hs.477361	NM_012430		SEC22A	SEC22L2	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70430	chr3	125486222	125486339	+	10.26100	NA	Intergenic	Intergenic	23115	NR_031687	100302204		NR_031687	miRBase:MI0006421	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1	microRNA 548i-1	ncRNA
19-PTNLD28-TUMOR_peak_24201	chr12	50878327	50878649	+	10.26052	NA	Intergenic	Intergenic	-20280	NM_173602	57609	Hs.505516	NM_020849	HPRD:08751	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_4103	chr1	65383397	65383520	+	10.26052	NA	intron (NM_002227, intron 1 of 24)	intron (NM_002227, intron 1 of 24)	48729	NM_002227	3716	Hs.207538	NM_002227	HPRD:00992	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_16674	chr11	2790424	2790577	+	10.26052	NA	intron (NM_181798, intron 12 of 15)	intron (NM_181798, intron 12 of 15)	-69272	NR_002728	10984	Hs.604823	NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_99200	chr8	74048384	74048619	+	10.26052	NA	Intergenic	LTR40A1|LTR|ERVL	-42994	NM_153225	157869	Hs.439040	NM_153225	HPRD:15271	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin, type 1 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_18817	chr11	60752213	60752499	+	10.26052	NA	intron (NM_001254750, intron 1 of 10)	L2a|LINE|L2	13243	NM_001254750	923	Hs.744366	NM_006725	HPRD:01724	CD6	TP120	CD6 molecule	protein-coding
19-PTNLD28-TUMOR_peak_55680	chr2	130872487	130872638	+	10.26052	NA	exon (NM_001099771, exon 5 of 17)	exon (NM_001099771, exon 5 of 17)	14233	NM_001099771	728378	Hs.580547	NM_001099771	ENSG00000196604	POTEF	A26C1B|ACTB|POTE2alpha|POTEACTIN	POTE ankyrin domain family, member F	protein-coding
19-PTNLD28-TUMOR_peak_13398	chr10	47363205	47363498	+	10.26052	NA	Intergenic	Intergenic	-16369	NR_027634	439965	Hs.283521	NR_027634		FAM35DP	FAM35B2	family with sequence similarity 35, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_78321	chr4	185709211	185709598	+	10.26052	NA	intron (NM_001286711, intron 3 of 19)	MER103C|DNA|hAT-Charlie	10796	NR_003542	643036	Hs.689630	NR_003542		SLED1	-	proteoglycan 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71036	chr3	135158094	135158329	+	10.26052	NA	Intergenic	L1P1|LINE|L1	-526304	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_44751	chr18	15060374	15060888	+	10.26052	NA	Intergenic	MER52A|LTR|ERV1	-90164	NR_110783	101927642	Hs.711242	NR_110783		LINC01444	-	long intergenic non-protein coding RNA 1444	ncRNA
19-PTNLD28-TUMOR_peak_67621	chr3	39419725	39419828	+	10.26052	NA	Intergenic	Intergenic	-5039	NM_017875	54977	Hs.369615	NM_017875	HPRD:07925	SLC25A38	-	solute carrier family 25, member 38	protein-coding
19-PTNLD28-TUMOR_peak_8427	chr1	177917579	177917766	+	10.26052	NA	intron (NM_033127, intron 12 of 25)	intron (NM_033127, intron 12 of 25)	21378	NM_033127	89866	Hs.149540	NM_033127	HPRD:11491	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_106106	chr9	129160877	129160994	+	10.26052	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	11848	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
19-PTNLD28-TUMOR_peak_108888	chrX	89526795	89526895	+	10.26052	NA	Intergenic	Intergenic	349905	NM_138960	90316	Hs.592220	NM_138960	HPRD:02328	TGIF2LX	TGIFLX	TGFB-induced factor homeobox 2-like, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_33392	chr15	44870782	44870926	+	10.26052	NA	intron (NM_025137, intron 30 of 39)	L1MEf|LINE|L1	41588	NM_003758	8669	Hs.404056	NM_003758	HPRD:04883	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3, subunit J	protein-coding
19-PTNLD28-TUMOR_peak_47331	chr19	11521470	11521659	+	10.26052	NA	intron (NM_001161616, intron 5 of 18)	L1MC5|LINE|L1	8454	NM_001161616	57139	Hs.375142	NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator-like 3	protein-coding
19-PTNLD28-TUMOR_peak_62439	chr20	58786274	58786379	+	10.25712	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	72778	NR_046099	284757	Hs.737441	NM_001004305	HPRD:17342	MIR646HG	-	MIR646 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16859	chr11	6272479	6272588	+	10.25712	NA	Intergenic	Intergenic	-8371	NM_176875	887	Hs.203	NM_176875	HPRD:00323	CCKBR	CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_78419	chr4	187476292	187476612	+	10.25712	NA	promoter-TSS (NM_005958)	promoter-TSS (NM_005958)	85	NM_005958	4543	Hs.243467	NM_005958	HPRD:02812	MTNR1A	MEL-1A-R|MT1	melatonin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_105565	chr9	116896477	116896646	+	10.25712	NA	Intergenic	AluJb|SINE|Alu	-21670	NM_032888	85301	Hs.494892	NM_032888		COL27A1	STLS	collagen, type XXVII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_61898	chr20	49928622	49928763	+	10.25712	NA	Intergenic	MER4B|LTR|ERV1	140822	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	ncRNA
19-PTNLD28-TUMOR_peak_59332	chr2	242736962	242737097	+	10.25712	NA	intron (NM_022134, intron 1 of 3)	intron (NM_022134, intron 1 of 3)	-13131	NM_001167600	129807	Hs.551747	NM_080741	HPRD:12249	NEU4	-	sialidase 4	protein-coding
19-PTNLD28-TUMOR_peak_31728	chr14	92588040	92588722	+	10.25712	NA	promoter-TSS (NM_004545)	promoter-TSS (NM_004545)	83	NM_017437	53981	Hs.657632	NM_017437	HPRD:05824	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2, 100kDa	protein-coding
19-PTNLD28-TUMOR_peak_56992	chr2	173330564	173330706	+	10.25712	NA	intron (NM_001079818, intron 2 of 24)	intron (NM_001079818, intron 2 of 24)	38321	NM_001079818	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_22575	chr12	4004662	4004771	+	10.25712	NA	Intergenic	Intergenic	-22102	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_11146	chr1	236501530	236501677	+	10.25712	NA	Intergenic	MER31B|LTR|ERV1	-56077	NM_145861	128178	Hs.352224	NM_080738	HPRD:05965	EDARADD	ECTD11A|ECTD11B|ED3|EDA3	EDAR-associated death domain	protein-coding
19-PTNLD28-TUMOR_peak_3376	chr1	48667787	48668076	+	10.25712	NA	Intergenic	Intergenic	-19831	NR_026749	391037	Hs.585393	NR_026749		SKINTL	BTN12|SKINT1|SKINTP	Skint-like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_34095	chr15	67072548	67072681	+	10.25712	NA	intron (NR_027654, intron 4 of 4)	intron (NR_027654, intron 4 of 4)	71684	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_109881	chrX	152820330	152820506	+	10.25712	NA	intron (NM_001001344, intron 11 of 19)	intron (NM_001001344, intron 11 of 19)	18838	NM_021949	492	Hs.533956	NM_021949	HPRD:02057	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase, Ca++ transporting, plasma membrane 3	protein-coding
19-PTNLD28-TUMOR_peak_79461	chr5	35088116	35088340	+	10.25712	NA	intron (NM_000949, intron 3 of 9)	intron (NM_000949, intron 3 of 9)	29996	NM_001204316	5618	Hs.368587	NM_000949	HPRD:01457	PRLR	HPRL|MFAB|hPRLrI	prolactin receptor	protein-coding
19-PTNLD28-TUMOR_peak_2644	chr1	39720997	39721161	+	10.25712	NA	intron (NM_012090, intron 4 of 92)	intron (NM_012090, intron 4 of 92)	-154097	NM_015038	643314	Hs.658760	NM_015038	ENSG00000255103	KIAA0754	-	KIAA0754	protein-coding
19-PTNLD28-TUMOR_peak_31732	chr14	92829382	92829582	+	10.25712	NA	intron (NM_153647, intron 3 of 17)	intron (NM_153647, intron 3 of 17)	39330	NM_153646	123041	Hs.385530	NM_153646		SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding
19-PTNLD28-TUMOR_peak_56446	chr2	157256440	157256609	+	10.25564	NA	Intergenic	Intergenic	-35441	NM_001083112	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_26763	chr12	122065129	122065273	+	10.25564	NA	intron (NM_032790, intron 1 of 1)	intron (NM_032790, intron 1 of 1)	746	NM_032790	84876	Hs.55148	NM_032790		ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_81571	chr5	112257222	112257551	+	10.25564	NA	intron (NM_005669, intron 1 of 4)	CpG	645	NM_005669	7905	Hs.429608	NM_005669	HPRD:15918	REEP5	C5orf18|D5S346|DP1|TB2|YOP1	receptor accessory protein 5	protein-coding
19-PTNLD28-TUMOR_peak_50479	chr19	57349399	57349784	+	10.25134	NA	intron (NM_001146326, intron 1 of 11)	intron (NM_001146326, intron 1 of 11)	2503	NM_001146185	5178	Hs.731875	NM_006210	HPRD:03285	PEG3	PW1|ZKSCAN22|ZNF904|ZSCAN24	paternally expressed 3	protein-coding
19-PTNLD28-TUMOR_peak_71998	chr3	158289308	158289620	+	10.24860	NA	promoter-TSS (NR_104147)	promoter-TSS (NR_104147)	511	NM_001195433	4291	Hs.85195	NM_022443	HPRD:03239	MLF1	-	myeloid leukemia factor 1	protein-coding
19-PTNLD28-TUMOR_peak_81739	chr5	118747638	118747971	+	10.24824	NA	Intergenic	Intergenic	-40334	NM_000414	3295	Hs.406861	NM_000414	HPRD:03514	HSD17B4	DBP|MFE-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding
19-PTNLD28-TUMOR_peak_23812	chr12	41904445	41904566	+	10.24778	NA	intron (NM_001164595, intron 5 of 9)	intron (NM_001164595, intron 5 of 9)	72964	NM_013377	29951	Hs.380044	NM_013377	HPRD:15116	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
19-PTNLD28-TUMOR_peak_79039	chr5	14753194	14753738	+	10.24778	NA	intron (NM_054027, intron 4 of 11)	intron (NM_054027, intron 4 of 11)	40663	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
19-PTNLD28-TUMOR_peak_60980	chr20	37360037	37360367	+	10.24778	NA	Intergenic	Intergenic	7097	NM_080552	140679	Hs.179080	NM_080552	HPRD:18058	SLC32A1	VGAT|VIAAT	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_71329	chr3	141022371	141022489	+	10.24778	NA	Intergenic	Intergenic	-20625	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
19-PTNLD28-TUMOR_peak_9204	chr1	201322413	201322824	+	10.24778	NA	Intergenic	Intergenic	24210	NM_001276346	7139	Hs.533613	NM_000364	HPRD:01844	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T type 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_50740	chr2	603008	603419	+	10.24778	NA	Intergenic	Intergenic	74226	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_11518	chr1	247334857	247335065	+	10.24778	NA	intron (NM_001297569, intron 1 of 3)	CpG	358	NM_001243740	7678	Hs.421238	NM_003431	HPRD:01936	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
19-PTNLD28-TUMOR_peak_63826	chr21	44568225	44568374	+	10.24778	NA	Intergenic	Intergenic	-20819	NM_000394	1409	Hs.184085	NM_000394	HPRD:00427	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
19-PTNLD28-TUMOR_peak_41204	chr17	36338146	36338480	+	10.24728	NA	exon (NM_032258, exon 14 of 14)	exon (NM_032258, exon 14 of 14)	10294	NM_001291466	102723859	Hs.454716	NM_001291466		LOC102723859	-	TBC1 domain family member-like	protein-coding
19-PTNLD28-TUMOR_peak_1282	chr1	20821452	20821741	+	10.24320	NA	Intergenic	Intergenic	-8868	NM_018584	55450	Hs.731383	NM_018584	HPRD:13112	CAMK2N1	PRO1489	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_82526	chr5	138862245	138862488	+	10.24320	NA	promoter-TSS (NM_198282)	promoter-TSS (NM_198282)	-23	NM_198282	340061	Hs.379754	NM_198282		TMEM173	ERIS|MITA|MPYS|NET23|SAVI|STING	transmembrane protein 173	protein-coding
19-PTNLD28-TUMOR_peak_16648	chr11	2333553	2333790	+	10.24320	NA	intron (NM_139022, intron 4 of 9)	intron (NM_139022, intron 4 of 9)	10428	NM_139022	10077	Hs.271954	NM_005705	HPRD:04834	TSPAN32	ART1|PHEMX|PHMX|TSSC6	tetraspanin 32	protein-coding
19-PTNLD28-TUMOR_peak_92003	chr7	35737056	35737281	+	10.24320	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-2396	NM_022373	64224	Hs.643051	NM_022373	HPRD:07984	HERPUD2	-	HERPUD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_26707	chr12	121341182	121341500	+	10.24109	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	814	NM_139015	121665	Hs.507087	NM_139015	HPRD:09744	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
19-PTNLD28-TUMOR_peak_20056	chr11	75049688	75049799	+	10.24109	NA	intron (NM_004041, intron 1 of 15)	intron (NM_004041, intron 1 of 15)	-3513	NR_029891	442900		NR_029891		MIR326	MIRN326|hsa-mir-326	microRNA 326	ncRNA
19-PTNLD28-TUMOR_peak_55641	chr2	130059035	130059468	+	10.24109	NA	Intergenic	Intergenic	-27787	NR_122040	151121	Hs.531687	NM_001033657	ENSG00000204460	LOC151121	-	uncharacterized LOC151121	ncRNA
19-PTNLD28-TUMOR_peak_29082	chr13	111267783	111268467	+	10.24109	NA	intron (NM_018210, intron 1 of 9)	CpG	194	NM_018210	55739	Hs.408324	NM_018210	HPRD:07698	CARKD	LP3298	carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_37757	chr16	50407076	50407182	+	10.24109	NA	Intergenic	Intergenic	-4284	NM_001173984	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_71103	chr3	136649269	136649382	+	10.24109	NA	promoter-TSS (NM_001190796)	promoter-TSS (NM_001190796)	8	NM_001190796	4690	Hs.126889	NM_006153	HPRD:02740	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40792	chr17	27044670	27044927	+	10.23744	NA	5' UTR (NM_001144942, exon 1 of 10)	5' UTR (NM_001144942, exon 1 of 10)	110	NM_031934	83871	Hs.301853	NM_031934	HPRD:06701	RAB34	RAB39|RAH	RAB34, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_56516	chr2	159580516	159580629	+	10.23661	NA	Intergenic	Intergenic	-71257	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88506	chr6	82463490	82463835	+	10.23376	NA	Intergenic	CpG-22314	-1234	NM_017633	55603	Hs.10784	NM_017633	HPRD:13311	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
19-PTNLD28-TUMOR_peak_49400	chr19	45981411	45981642	+	10.23307	NA	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	10273	NM_006732	2354	Hs.590958	NM_006732	HPRD:01270	FOSB	AP-1|G0S3|GOS3|GOSB	FBJ murine osteosarcoma viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_58895	chr2	233756365	233756526	+	10.23097	NA	intron (NM_019850, intron 7 of 14)	intron (NM_019850, intron 7 of 14)	21451	NM_206895	389084	Hs.657509	NM_206895	HPRD:15620	C2orf82	UNQ830	chromosome 2 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_64087	chr21	47312004	47312412	+	10.23097	NA	intron (NM_020528, intron 1 of 13)	intron (NM_020528, intron 1 of 13)	42333	NM_020528	54039	Hs.474049	NM_020528	HPRD:10534	PCBP3	ALPHA-CP3	poly(rC) binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_3217	chr1	46797854	46798119	+	10.23097	NA	Intergenic	LTR2B|LTR|ERV1	-7863	NR_045789	387338	Hs.163424	NM_199044		NSUN4	SHTAP	NOP2/Sun domain family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_60164	chr20	22444424	22444556	+	10.23097	NA	Intergenic	Intergenic	-43209	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
19-PTNLD28-TUMOR_peak_61251	chr20	43271149	43271515	+	10.23097	NA	intron (NM_000022, intron 1 of 11)	L2|LINE|L2	9044	NM_000022	100	Hs.654536	NM_000022	HPRD:00038	ADA	-	adenosine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_16019	chr10	123734066	123734498	+	10.23097	NA	intron (NM_017615, intron 1 of 10)	CpG	461	NM_017615	54780	Hs.258798	NM_017615	HPRD:16585	NSMCE4A	C10orf86|NS4EA|NSE4A	non-SMC element 4 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_17607	chr11	19960537	19960688	+	10.23097	NA	intron (NM_182964, intron 7 of 37)	intron (NM_182964, intron 7 of 37)	-83490	NM_001111019	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_71352	chr3	141205836	141205972	+	10.22014	NA	promoter-TSS (NM_006506)	promoter-TSS (NM_006506)	-22	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_44133	chr17	80675183	80675352	+	10.21846	NA	intron (NM_024619, intron 1 of 5)	intron (NM_024619, intron 1 of 5)	685	NM_024619	79672	Hs.31431	NM_024619	HPRD:13546	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
19-PTNLD28-TUMOR_peak_51245	chr2	14775644	14775833	+	10.21846	NA	exon (NM_001291410, exon 1 of 2)	exon (NM_001291410, exon 1 of 2)	523	NM_001291410	653602	Hs.657296	NM_001291410		LOC653602	-	uncharacterized LOC653602	protein-coding
19-PTNLD28-TUMOR_peak_95505	chr7	134381143	134381273	+	10.21846	NA	Intergenic	Intergenic	49677	NM_001293085	669	Hs.198365	NM_001724	HPRD:01961	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
19-PTNLD28-TUMOR_peak_57897	chr2	203736264	203736552	+	10.21846	NA	promoter-TSS (NM_001288623)	promoter-TSS (NM_001288623)	-213	NM_001288623	130026	Hs.516629	NM_138468	HPRD:12446	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1,69kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_103485	chr9	67339302	67339411	+	10.21714	NA	Intergenic	AluJr|SINE|Alu	-49864	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_97618	chr8	22553293	22553415	+	10.21556	NA	Intergenic	CpG-25499	-2539	NM_004430	1960	Hs.534313	NM_004430	HPRD:03881	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
19-PTNLD28-TUMOR_peak_28861	chr13	101326065	101326306	+	10.21556	NA	intron (NM_032813, intron 1 of 18)	intron (NM_032813, intron 1 of 18)	1004	NM_001079669	84899	Hs.190983	NM_032813	HPRD:07864	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
19-PTNLD28-TUMOR_peak_27298	chr12	133336692	133337052	+	10.21556	NA	intron (NM_015114, intron 1 of 12)	intron (NM_015114, intron 1 of 12)	1602	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_19139	chr11	64084485	64084753	+	10.21500	NA	promoter-TSS (NM_012094)	promoter-TSS (NM_012094)	937	NM_001286082	51504	Hs.333579	NM_016404	HPRD:13705	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2	tRNA methyltransferase 11-2 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55381	chr2	121428317	121428737	+	10.21500	NA	Intergenic	Intergenic	-126340	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_74413	chr4	9104916	9105097	+	10.21303	NA	Intergenic	HERVE-int|LTR|ERV1	-107377	NM_001256852	100287144	Hs.741130	NM_001256852	ENSG00000231396	USP17L10	-	ubiquitin specific peptidase 17-like family member 10	protein-coding
19-PTNLD28-TUMOR_peak_70619	chr3	128151951	128152242	+	10.21303	NA	Intergenic	CpG	-30341	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64437	chr22	20380189	20380333	+	10.21223	NA	exon (NM_001242313, exon 9 of 9)	exon (NM_001242313, exon 9 of 9)	2592	NM_001242313	728229	Hs.376511	NM_001242313		TMEM191B	-	transmembrane protein 191B	protein-coding
19-PTNLD28-TUMOR_peak_28244	chr13	50432751	50432913	+	10.20838	NA	Intergenic	Intergenic	-31713	NR_003268	220429	Hs.448219	NR_003268	ENSG00000181358	CTAGE10P	-	CTAGE family, member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_85350	chr6	11416507	11416602	+	10.20838	NA	Intergenic	LTR12C|LTR|ERV1	-33973	NR_073131	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_110099	chrY	1997865	1997978	+	10.20838	NA	Intergenic	Intergenic	313895	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_99662	chr8	99397060	99397315	+	10.20838	NA	Intergenic	Intergenic	-42063	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_20436	chr11	86227024	86227138	+	10.20838	NA	intron (NM_001014811, intron 3 of 13)	intron (NM_001014811, intron 3 of 13)	141303	NM_021827	60494	Hs.144913	NM_021827	HPRD:08032	CCDC81	-	coiled-coil domain containing 81	protein-coding
19-PTNLD28-TUMOR_peak_100647	chr8	126137895	126138087	+	10.20838	NA	intron (NM_173685, intron 3 of 7)	LTR40a|LTR|ERVL	33908	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_84119	chr5	173739039	173739209	+	10.20838	NA	Intergenic	CpG	-24233	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_15084	chr10	99028285	99028446	+	10.20838	NA	intron (NM_001204300, intron 1 of 10)	THE1B|LTR|ERVL-MaLR	2082	NM_001256423	84986	Hs.80305	NM_032900	HPRD:12475	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
19-PTNLD28-TUMOR_peak_20215	chr11	77594890	77594999	+	10.20838	NA	exon (NM_033547, exon 22 of 23)	exon (NM_033547, exon 22 of 23)	62736	NM_024684	28971	Hs.745040	NM_024684	HPRD:17924	AAMDC	C11orf67|CK067	adipogenesis associated, Mth938 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_78381	chr4	186652358	186652604	+	10.20838	NA	intron (NM_001145672, intron 1 of 20)	intron (NM_001145672, intron 1 of 20)	44585	NM_001145673	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_61086	chr20	39279835	39280033	+	10.20838	NA	Intergenic	L1M5|LINE|L1	37946	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_15904	chr10	120490502	120490856	+	10.20838	NA	intron (NM_153810, intron 1 of 8)	intron (NM_153810, intron 1 of 8)	24079	NM_153810	143384	Hs.420024	NM_153810	HPRD:12576	CACUL1	C10orf46|CAC1	CDK2-associated, cullin domain 1	protein-coding
19-PTNLD28-TUMOR_peak_60782	chr20	34973045	34973291	+	10.20838	NA	intron (NM_014902, intron 1 of 12)	intron (NM_014902, intron 1 of 12)	78923	NM_014902	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_32560	chr15	22977309	22977516	+	10.20838	NA	intron (NM_001033028, intron 7 of 15)	MER77B|LTR|ERVL	21657	NM_001033028	23191	Hs.26704	NM_014608	HPRD:05890	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_94935	chr7	117285522	117285681	+	10.20838	NA	intron (NM_000492, intron 23 of 26)	intron (NM_000492, intron 23 of 26)	165584	NM_000492	1080	Hs.489786	NM_000492	HPRD:03883	CFTR	ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1	cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)	protein-coding
19-PTNLD28-TUMOR_peak_39841	chr17	4806995	4807105	+	10.20578	NA	promoter-TSS (NM_000080)	promoter-TSS (NM_000080)	-681	NM_000080	1145	Hs.654535	NM_000080	HPRD:00008	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	cholinergic receptor, nicotinic, epsilon (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_19946	chr11	73104742	73104847	+	10.20578	NA	intron (NM_152222, intron 6 of 10)	intron (NM_152222, intron 6 of 10)	17081	NM_032871	84957	Hs.533720	NM_032871	HPRD:15544	RELT	TNFRSF19L|TRLT	RELT tumor necrosis factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_97424	chr8	19522967	19523176	+	10.20578	NA	intron (NR_024040, intron 1 of 9)	intron (NR_024040, intron 1 of 9)	17023	NM_018371	55790	Hs.613729	NM_018371	HPRD:13114	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_70334	chr3	124491170	124491626	+	10.20578	NA	intron (NM_002213, intron 11 of 14)	intron (NM_002213, intron 11 of 14)	42185	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_68778	chr3	64331202	64331362	+	10.20578	NA	Intergenic	Intergenic	-120151	NM_198859	166336	Hs.148105	NM_198859	HPRD:16342	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_73666	chr3	197287145	197287261	+	10.20578	NA	intron (NM_203315, intron 1 of 6)	LTR10C|LTR|ERV1	-4345	NM_004051	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_105546	chr9	116468399	116468640	+	10.20521	NA	Intergenic	L2c|LINE|L2	112085	NM_001276262	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_109194	chrX	111745715	111745898	+	10.20521	NA	Intergenic	L1PA3|LINE|L1	177569	NM_178175	340596	Hs.297420	NM_178175	HPRD:06610	LHFPL1	-	lipoma HMGIC fusion partner-like 1	protein-coding
19-PTNLD28-TUMOR_peak_53731	chr2	84942459	84942628	+	10.20521	NA	intron (NM_001370, intron 57 of 76)	intron (NM_001370, intron 57 of 76)	165826	NM_001080824	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_48227	chr19	21675893	21676165	+	10.20521	NA	intron (NR_037194, intron 5 of 10)	BSR/Beta|Satellite|Satellite	9512	NR_037194	400680	Hs.710554	NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
19-PTNLD28-TUMOR_peak_26610	chr12	120339969	120340085	+	10.20521	NA	Intergenic	Intergenic	-24932	NM_001206999	11113	Hs.119594	NM_007174	HPRD:09289	CIT	CRIK|STK21	citron rho-interacting serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_68032	chr3	48274307	48274456	+	10.20521	NA	Intergenic	Intergenic	-8215	NM_016089	51385	Hs.172602	NM_016089	HPRD:15865	ZNF589	SZF1	zinc finger protein 589	protein-coding
19-PTNLD28-TUMOR_peak_65641	chr22	41042357	41042520	+	10.20521	NA	Intergenic	Intergenic	-9715	NM_001282661	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_16753	chr11	3509352	3509449	+	10.20521	NA	Intergenic	MER91C|DNA|hAT-Tip100	-96255	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46840	chr19	5102974	5103267	+	10.20521	NA	intron (NM_015015, intron 9 of 22)	intron (NM_015015, intron 9 of 22)	133996	NM_015015	23030	Hs.654816	NM_015015	HPRD:11056	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
19-PTNLD28-TUMOR_peak_58545	chr2	221093497	221093620	+	10.20521	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-322272	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_59835	chr20	11791058	11791219	+	10.20521	NA	intron (NR_110635, intron 1 of 1)	intron (NR_110635, intron 1 of 1)	60225	NR_110635	728450	Hs.560990	NR_110635		LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
19-PTNLD28-TUMOR_peak_61960	chr20	50700309	50700502	+	10.20521	NA	TTS (NM_199427)	TTS (NM_199427)	108119	NM_199426	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_5679	chr1	114695330	114695519	+	10.20521	NA	promoter-TSS (NM_205848)	promoter-TSS (NM_205848)	-362	NM_205848	148281	Hs.370963	NM_205848	HPRD:09654	SYT6	sytVI	synaptotagmin VI	protein-coding
19-PTNLD28-TUMOR_peak_33373	chr15	44451769	44452006	+	10.20521	NA	intron (NM_001286490, intron 1 of 15)	L2c|LINE|L2	34757	NM_001286490	84978	Hs.578544	NM_032892	HPRD:17493	FRMD5	-	FERM domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_70359	chr3	124765004	124765127	+	10.20521	NA	intron (NM_020733, intron 1 of 16)	MARNA|DNA|TcMar-Mariner	9737	NM_020733	57493	Hs.477420	NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_81203	chr5	94781845	94781973	+	10.20521	NA	intron (NM_152548, intron 7 of 9)	intron (NM_152548, intron 7 of 9)	54861	NM_152548	153643	Hs.276287	NM_152548	HPRD:08686	FAM81B	-	family with sequence similarity 81, member B	protein-coding
19-PTNLD28-TUMOR_peak_61664	chr20	47950565	47950809	+	10.20521	NA	Intergenic	Intergenic	53467	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
19-PTNLD28-TUMOR_peak_53912	chr2	86995433	86995647	+	10.20521	NA	intron (NM_022780, intron 6 of 8)	intron (NM_022780, intron 6 of 8)	23297	NM_171827	925	Hs.85258	NM_001768	HPRD:01737	CD8A	CD8|Leu2|MAL|p32	CD8a molecule	protein-coding
19-PTNLD28-TUMOR_peak_108278	chrX	48979946	48980290	+	10.20521	NA	promoter-TSS (NM_015698)	promoter-TSS (NM_015698)	33	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
19-PTNLD28-TUMOR_peak_43534	chr17	74236913	74237372	+	10.20521	NA	promoter-TSS (NM_052916)	promoter-TSS (NM_052916)	-752	NM_052916	114804	Hs.500643	NM_052916	HPRD:15259	RNF157	-	ring finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_40607	chr17	20224124	20224399	+	10.20521	NA	promoter-TSS (NR_023380)	promoter-TSS (NR_023380)	-226	NR_023380	348254	Hs.462475	NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95445	chr7	132563382	132563747	+	10.20521	NA	intron (NM_017812, intron 5 of 7)	L2a|LINE|L2	203264	NM_017812	54927	Hs.655010	NM_017812	HPRD:13044	CHCHD3	MINOS3|PPP1R22	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_71468	chr3	143815027	143815138	+	10.20521	NA	Intergenic	Intergenic	122915	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_54696	chr2	106720943	106721054	+	10.20521	NA	intron (NR_045607, intron 10 of 13)	intron (NR_045607, intron 10 of 13)	34339	NM_001253876	80146	Hs.469561	NM_025076	HPRD:15642	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_83039	chr5	147314719	147314864	+	10.20521	NA	Intergenic	Intergenic	-28690	NM_206966	389336	Hs.660038	NM_206966	HPRD:14491	C5orf46	SSSP1	chromosome 5 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_4961	chr1	94261685	94262186	+	10.20521	NA	intron (NM_001261408, intron 2 of 13)	L1PA2|LINE|L1	-50453	NR_030621	100126348		NR_030621	miRBase:MI0005567	MIR760	MIRN760|hsa-mir-760	microRNA 760	ncRNA
19-PTNLD28-TUMOR_peak_72534	chr3	177993218	177993352	+	10.20521	NA	Intergenic	Intergenic	-143704	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
19-PTNLD28-TUMOR_peak_13350	chr10	46880785	46881102	+	10.20521	NA	Intergenic	Intergenic	-16698	NR_027632	414241	Hs.594331	NM_001098846	ENSG00000165874	FAM35BP	FAM35B|FAM35EP|bA38L15.1	family with sequence similarity 35, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105297	chr9	111869641	111869863	+	10.20521	NA	intron (NM_032012, intron 2 of 17)	intron (NM_032012, intron 2 of 17)	12473	NM_032012	23731	Hs.308074	NM_032012	HPRD:09866	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
19-PTNLD28-TUMOR_peak_55193	chr2	117782952	117783069	+	10.20477	NA	Intergenic	Intergenic	-789245	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_65692	chr22	41913382	41913939	+	10.20477	NA	intron (NM_001098, intron 7 of 17)	intron (NM_001098, intron 7 of 17)	26833	NM_138338	171568	Hs.712617	NM_138338	HPRD:15157	POLR3H	RPC22.9|RPC8	polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)	protein-coding
19-PTNLD28-TUMOR_peak_53880	chr2	86450823	86451059	+	10.20477	NA	intron (NM_001164731, intron 5 of 5)	intron (NM_001164731, intron 5 of 5)	24385	NM_016622	51318	Hs.433439	NM_016622	HPRD:14755	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding
19-PTNLD28-TUMOR_peak_91858	chr7	30728335	30728522	+	10.20477	NA	intron (NM_001202481, intron 2 of 13)	intron (NM_001202481, intron 2 of 13)	-6287	NM_001202483	1395	Hs.546246	NM_001883		CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_58029	chr2	207114893	207115228	+	10.20477	NA	intron (NR_104359, intron 2 of 5)	intron (NR_104359, intron 2 of 5)	-24305	NM_020923	57683	Hs.110489	NM_020923	ENSG00000204186	ZDBF2	-	zinc finger, DBF-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_70470	chr3	125978417	125978563	+	10.20477	NA	Intergenic	Intergenic	-78461	NM_001270364	10840	Hs.434435	NM_012190	HPRD:02594	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family, member L1	protein-coding
19-PTNLD28-TUMOR_peak_87966	chr6	52622584	52622748	+	10.20477	NA	exon (NM_000846, exon 2 of 7)	exon (NM_000846, exon 2 of 7)	5695	NM_000846	2939	Hs.94107	NM_000846	HPRD:00709	GSTA2	GST2|GSTA2-2|GTA2|GTH2	glutathione S-transferase alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_83851	chr5	169949942	169950331	+	10.20477	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	19096	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_26901	chr12	123635579	123636095	+	10.20477	NA	Intergenic	CpG	-40801	NM_001300801	57605	Hs.272759	NM_020845	HPRD:08335	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding
19-PTNLD28-TUMOR_peak_24028	chr12	48213740	48214042	+	10.20477	NA	promoter-TSS (NM_015401)	promoter-TSS (NM_015401)	-128	NM_015401	51564	Hs.200063	NM_015401	HPRD:09133	HDAC7	HD7A|HDAC7A	histone deacetylase 7	protein-coding
19-PTNLD28-TUMOR_peak_102209	chr9	13728256	13728484	+	10.20477	NA	Intergenic	Intergenic	-199600	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
19-PTNLD28-TUMOR_peak_43322	chr17	72450530	72450708	+	10.20473	NA	Intergenic	Intergenic	-11903	NM_007261	11314	Hs.9688	NM_007261	HPRD:09492	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
19-PTNLD28-TUMOR_peak_65134	chr22	31640119	31640227	+	10.20473	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	-4175	NM_001031801	3985	Hs.474596	NM_005569	HPRD:03585	LIMK2	-	LIM domain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_23527	chr12	27664357	27664567	+	10.20473	NA	Intergenic	Intergenic	-12583	NM_177444	8496	Hs.172445	NM_003622	HPRD:04390	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
19-PTNLD28-TUMOR_peak_92005	chr7	35840085	35840316	+	10.20473	NA	promoter-TSS (NM_001788)	promoter-TSS (NM_001788)	35	NR_120512	101928545	Hs.648103	NR_120511		SEPT7-AS1	-	SEPT7 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_50967	chr2	9385257	9385654	+	10.20473	NA	intron (NM_003887, intron 1 of 27)	intron (NM_003887, intron 1 of 27)	38561	NM_003887	8853	Hs.555902	NM_003887	HPRD:04820	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
19-PTNLD28-TUMOR_peak_58510	chr2	220362679	220362875	+	10.19768	NA	promoter-TSS (NM_013335)	promoter-TSS (NM_013335)	-810	NM_013335	29926	Hs.27059	NM_013335	HPRD:13588	GMPPA	AAMR	GDP-mannose pyrophosphorylase A	protein-coding
19-PTNLD28-TUMOR_peak_95355	chr7	131012102	131012254	+	10.19768	NA	promoter-TSS (NM_013255)	promoter-TSS (NM_013255)	360	NR_125364	100506881	Hs.660830	NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_62066	chr20	52360209	52360436	+	10.19738	NA	Intergenic	L2a|LINE|L2	131926	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_37020	chr16	28303367	28303508	+	10.19234	NA	promoter-TSS (NM_001024401)	promoter-TSS (NM_001024401)	-403	NM_001024401	388228	Hs.97837	NM_001024401	HPRD:18608	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_88305	chr6	73738702	73738964	+	10.19234	NA	intron (NM_001160133, intron 2 of 14)	intron (NM_001160133, intron 2 of 14)	-61357	NR_036244	100423005		NR_036244	miRBase:MI0015890	MIR4282	-	microRNA 4282	ncRNA
19-PTNLD28-TUMOR_peak_24966	chr12	64474522	64474687	+	10.19234	NA	intron (NM_020762, intron 10 of 21)	intron (NM_020762, intron 10 of 21)	141472	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_20352	chr11	81807027	81807142	+	10.19234	NA	intron (NR_120571, intron 5 of 7)	FordPrefect|DNA|hAT-Tip100	-205206	NR_036186	100422823		NR_036186	miRBase:MI0015831	MIR4300	-	microRNA 4300	ncRNA
19-PTNLD28-TUMOR_peak_82574	chr5	139227577	139227989	+	10.19234	NA	exon (NM_013981, exon 10 of 10)	exon (NM_013981, exon 10 of 10)	52377	NM_032289	84249	Hs.21963	NM_032289	HPRD:15190	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_11694	chr10	3270081	3270185	+	10.19234	NA	Intergenic	Intergenic	-55100	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_63416	chr21	37801216	37801356	+	10.19138	NA	Intergenic	L2b|LINE|L2	37453	NM_012130	23562	Hs.660278	NM_012130	HPRD:05727	CLDN14	DFNB29	claudin 14	protein-coding
19-PTNLD28-TUMOR_peak_104561	chr9	94186790	94187058	+	10.19138	NA	promoter-TSS (NM_005384)	promoter-TSS (NM_005384)	-16	NM_001290000	4783	Hs.79334	NM_005384	HPRD:05619	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
19-PTNLD28-TUMOR_peak_73930	chr4	2800205	2800409	+	10.19095	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	5557	NM_001122681	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_22437	chr12	1703328	1703550	+	10.18947	NA	promoter-TSS (NM_152441)	promoter-TSS (NM_152441)	-108	NM_152441	144699	Hs.367956	NM_152441	HPRD:10949	FBXL14	Fbl14	F-box and leucine-rich repeat protein 14	protein-coding
19-PTNLD28-TUMOR_peak_106418	chr9	132889505	132889622	+	10.18927	NA	intron (NM_020960, intron 15 of 17)	intron (NM_020960, intron 15 of 17)	-45294	NM_014286	23413	Hs.642946	NM_014286	HPRD:04500	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
19-PTNLD28-TUMOR_peak_85395	chr6	12009158	12009355	+	10.18840	NA	Intergenic	Intergenic	-3468	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_92247	chr7	44079706	44079970	+	10.18368	NA	non-coding (NR_024116, exon 2 of 9)	non-coding (NR_024116, exon 2 of 9)	384	NR_024116	401331	Hs.530089	NR_024116		RASA4CP	RASA4P	RAS p21 protein activator 4C, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_49920	chr19	50615746	50615899	+	10.18363	NA	promoter-TSS (NR_024228).4	promoter-TSS (NR_024228).4	-77	NR_024214	100169951	Hs.723094	NR_024214		SNAR-A3	-	small ILF3/NF90-associated RNA A3	snRNA
19-PTNLD28-TUMOR_peak_45340	chr18	37790780	37790929	+	10.18236	NA	Intergenic	MER39|LTR|ERV1	144604	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
19-PTNLD28-TUMOR_peak_65534	chr22	39220640	39220774	+	10.18236	NA	intron (NM_014293, intron 3 of 4)	intron (NM_014293, intron 3 of 4)	19310	NM_014293	23467	Hs.91622	NM_014293	HPRD:14837	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
19-PTNLD28-TUMOR_peak_56362	chr2	153302378	153302547	+	10.18236	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	110711	NM_052905	114793	Hs.654630	NM_052905	HPRD:13545	FMNL2	FHOD2	formin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_10913	chr1	233274645	233274806	+	10.18236	NA	intron (NM_014801, intron 20 of 33)	intron (NM_014801, intron 20 of 33)	156734	NM_014801	80003	Hs.370605	NM_014801	HPRD:15108	PCNXL2	-	pecanex-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_46311	chr18	74285737	74285879	+	10.18236	NA	Intergenic	MIRc|SINE|MIR	45196	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LINC00908	-	long intergenic non-protein coding RNA 908	ncRNA
19-PTNLD28-TUMOR_peak_34098	chr15	67127399	67127506	+	10.18236	NA	Intergenic	Intergenic	126522	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_109556	chrX	134340497	134340703	+	10.18236	NA	Intergenic	LTR13|LTR|ERVK	-34849	NM_017863	54967	Hs.272804	NM_017863	HPRD:06534	CT55	BJHCC20A|CXorf48	cancer/testis antigen 55	protein-coding
19-PTNLD28-TUMOR_peak_31187	chr14	72992435	72992633	+	10.18236	NA	intron (NM_001204420, intron 14 of 15)	intron (NM_001204420, intron 14 of 15)	9006	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_14455	chr10	79264754	79264888	+	10.18236	NA	intron (NM_001271519, intron 1 of 28)	intron (NM_001271519, intron 1 of 28)	132756	NM_001271520	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_54726	chr2	107446790	107446900	+	10.18236	NA	intron (NM_032528, intron 4 of 5)	intron (NM_032528, intron 4 of 5)	55765	NM_001142351	84620	Hs.98265	NM_032528	HPRD:12237	ST6GAL2	SIAT2|ST6GalII	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2	protein-coding
19-PTNLD28-TUMOR_peak_55174	chr2	115762361	115762491	+	10.18236	NA	intron (NM_001178036, intron 2 of 26)	L1PA3|LINE|L1	-59821	NM_001178037	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_107610	chrX	14013005	14013112	+	10.18236	NA	Intergenic	MLT2A2|LTR|ERVL	34977	NM_017856	54960	Hs.592237	NM_017856	HPRD:06533	GEMIN8	FAM51A1	gem (nuclear organelle) associated protein 8	protein-coding
19-PTNLD28-TUMOR_peak_4764	chr1	89776347	89776457	+	10.18236	NA	Intergenic	Intergenic	-20357	NR_077244	729930	Hs.745054	NR_077244		LOC729930	-	chromosome 11 open reading frame 74 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_104317	chr9	89458227	89458368	+	10.18236	NA	Intergenic	Intergenic	103807	NM_002048	2619	Hs.65029	NM_002048	HPRD:00747	GAS1	-	growth arrest-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_90523	chr6	167555716	167555905	+	10.18236	NA	Intergenic	Intergenic	15509	NM_005299	2853	Hs.248124	NM_005299		GPR31	12-HETER|HETER|HETER1	G protein-coupled receptor 31	protein-coding
19-PTNLD28-TUMOR_peak_83837	chr5	169681000	169681276	+	10.18236	NA	intron (NM_005565, intron 17 of 20)	MIRb|SINE|MIR	21188	NM_001102609	133874	Hs.519749	NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_67801	chr3	44519047	44519274	+	10.18236	NA	promoter-TSS (NM_181489)	promoter-TSS (NM_181489)	2	NM_181489	353274	Hs.250481	NM_181489	HPRD:11719	ZNF445	ZKSCAN15|ZNF168|ZSCAN47	zinc finger protein 445	protein-coding
19-PTNLD28-TUMOR_peak_56494	chr2	158890904	158891029	+	10.18236	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	39275	NM_001135098	151531	Hs.128427	NM_173355	HPRD:15627	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
19-PTNLD28-TUMOR_peak_76627	chr4	112440164	112440260	+	10.18236	NA	Intergenic	AluY|SINE|Alu	-626341	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_9010	chr1	193670210	193670348	+	10.18236	NA	Intergenic	Intergenic	396404	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_100446	chr8	122736778	122737019	+	10.18236	NA	Intergenic	Intergenic	-83268	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_108059	chrX	42748018	42748210	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	-110628	NR_002191	80316	Hs.127689	NM_025210		PPP1R2P9	I-4	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_31665	chr14	91066238	91066403	+	10.18236	NA	intron (NM_001010854, intron 17 of 19)	intron (NM_001010854, intron 17 of 19)	-42653	NR_110134	101928909	Hs.662545	NR_110134	ENSG00000259163	LOC101928909	-	uncharacterized LOC101928909	ncRNA
19-PTNLD28-TUMOR_peak_90551	chr6	168143594	168143714	+	10.18236	NA	Intergenic	ERVL-int|LTR|ERVL	53885	NR_026773	26238	Hs.520583	NM_014356	HPRD:12846	C6orf123	HGC6.2|dJ431P23.4	chromosome 6 open reading frame 123	ncRNA
19-PTNLD28-TUMOR_peak_91369	chr7	16700695	16700842	+	10.18236	NA	intron (NR_027624, intron 1 of 10)	intron (NR_027624, intron 1 of 10)	15009	NM_001159767	28969	Hs.487635	NM_014038	HPRD:16571	BZW2	MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
19-PTNLD28-TUMOR_peak_37781	chr16	50699339	50699519	+	10.18236	NA	TTS (NM_001144972)	TTS (NM_001144972)	-3337	NR_110908	101927272	Hs.460777	NR_110908	ENSG00000260249	LOC101927272	-	uncharacterized LOC101927272	ncRNA
19-PTNLD28-TUMOR_peak_84640	chr6	168870	169108	+	10.18236	NA	Intergenic	Intergenic	-20830	NR_109817	441123		NR_109817	ENSG00000170590	LINC00266-3	C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2	long intergenic non-protein coding RNA 266-3	ncRNA
19-PTNLD28-TUMOR_peak_109774	chrX	150306007	150306197	+	10.18236	NA	Intergenic	LOR1-int|LTR|ERV1	-30592	NR_036256	100422930		NR_036256	miRBase:MI0015902	MIR4330	-	microRNA 4330	ncRNA
19-PTNLD28-TUMOR_peak_105208	chr9	110348871	110349020	+	10.18236	NA	Intergenic	Intergenic	-96898	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_102181	chr9	12414672	12414806	+	10.18236	NA	Intergenic	Intergenic	-278647	NM_000550	7306	Hs.270279	NM_000550	HPRD:00283	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_13403	chr10	47428871	47429139	+	10.18236	NA	Intergenic	LTR78B|LTR|ERV1	49285	NR_027634	439965	Hs.283521	NR_027634		FAM35DP	FAM35B2	family with sequence similarity 35, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89861	chr6	147900885	147901119	+	10.18236	NA	Intergenic	L2a|LINE|L2	71174	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_81849	chr5	123855252	123855372	+	10.18236	NA	Intergenic	Intergenic	-81099	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_28723	chr13	96033005	96033205	+	10.18236	NA	Intergenic	MER66C|LTR|ERV1	-52748	NM_182848	9071	Hs.534377	NM_006984	HPRD:13063	CLDN10	CPETRL3|OSP-L	claudin 10	protein-coding
19-PTNLD28-TUMOR_peak_67220	chr3	24815414	24815515	+	10.18236	NA	Intergenic	MIR|SINE|MIR	-252538	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_10056	chr1	215756851	215756996	+	10.18236	NA	intron (NM_016121, intron 8 of 17)	MER41B|LTR|ERV1	16188	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_88180	chr6	64214807	64214958	+	10.18236	NA	Intergenic	Intergenic	-67035	NM_003463	7803	Hs.227777	NM_003463	HPRD:03349	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
19-PTNLD28-TUMOR_peak_12984	chr10	38055011	38055141	+	10.18236	NA	Intergenic	L1PA4|LINE|L1	29027	NR_051997	100419868	Hs.741719	NR_051997		ZNF33BP1	-	zinc finger protein 33B pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_85616	chr6	15872658	15872766	+	10.18236	NA	Intergenic	L2b|LINE|L2	-209423	NM_001271669	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_53279	chr2	69301185	69301397	+	10.18236	NA	intron (NM_053034, intron 6 of 14)	intron (NM_053034, intron 6 of 14)	-29523	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
19-PTNLD28-TUMOR_peak_108085	chrX	44534755	44534897	+	10.18236	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-132605	NM_173794	139341	Hs.7549	NM_173794	HPRD:06658	FUNDC1	-	FUN14 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_56096	chr2	142150118	142150334	+	10.18236	NA	intron (NM_018557, intron 3 of 90)	intron (NM_018557, intron 3 of 90)	739044	NM_018557	53353	Hs.656461	NM_018557	HPRD:16383	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_88638	chr6	87583010	87583138	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-63950	NM_000865	3354	Hs.1611	NM_000865	HPRD:01635	HTR1E	5-HT1E	5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_24885	chr12	60729676	60729769	+	10.18236	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	646604	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_17193	chr11	12007033	12007230	+	10.18236	NA	intron (NM_001018057, intron 3 of 6)	MIRb|SINE|MIR	23055	NM_001018057	27122	Hs.292156	NM_013253	HPRD:05659	DKK3	REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_64652	chr22	23112822	23112924	+	10.18236	NA	Intergenic	Intergenic	-52397	NR_030755	723778		NR_030755	miRBase:MI0003665	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
19-PTNLD28-TUMOR_peak_30047	chr14	43399384	43399510	+	10.18236	NA	Intergenic	LTR41|LTR|ERVL	1322683	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_41023	chr17	31994077	31994430	+	10.18236	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	-133474	NR_037584	100506677	Hs.652571	NR_037584		AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
19-PTNLD28-TUMOR_peak_31409	chr14	77444342	77444557	+	10.18236	NA	Intergenic	Intergenic	50593	NM_024496	64207	Hs.179260	NM_024496	HPRD:10713	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_49462	chr19	46580315	46580457	+	10.18236	NA	non-coding (NR_125344, exon 1 of 2)	non-coding (NR_125344, exon 1 of 2)	501	NR_125344	400706	Hs.630811	NR_125344		LOC400706	-	uncharacterized LOC400706	ncRNA
19-PTNLD28-TUMOR_peak_57416	chr2	190228436	190228556	+	10.18236	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-77663	NM_032168	84128	Hs.399984	NM_032168	HPRD:07775	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
19-PTNLD28-TUMOR_peak_30239	chr14	51178120	51178247	+	10.18236	NA	Intergenic	AluJr|SINE|Alu	-43112	NM_021818	60485	Hs.642842	NM_021818	HPRD:06229	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68480	chr3	55553193	55553347	+	10.18236	NA	intron (NM_015576, intron 16 of 16)	intron (NM_015576, intron 16 of 16)	-31600	NM_003392	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_51217	chr2	12815580	12815752	+	10.18236	NA	Intergenic	Intergenic	-41332	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_76772	chr4	119802859	119803080	+	10.18236	NA	intron (NM_001286754, intron 1 of 4)	intron (NM_001286754, intron 1 of 4)	-7027	NM_001128934	171024	Hs.655519	NM_133477	HPRD:15456	SYNPO2	-	synaptopodin 2	protein-coding
19-PTNLD28-TUMOR_peak_25498	chr12	87158155	87158250	+	10.18236	NA	intron (NM_013244, intron 1 of 6)	L1PA3|LINE|L1	74479	NM_013244	25834	Hs.589093	NM_013244	HPRD:09575	MGAT4C	GNTIVH|HGNT-IV-H	MGAT4 family, member C	protein-coding
19-PTNLD28-TUMOR_peak_79675	chr5	42078813	42078977	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	96552	NR_104635	101926960	Hs.365692	NR_104635		LOC101926960	-	uncharacterized LOC101926960	ncRNA
19-PTNLD28-TUMOR_peak_43597	chr17	74801524	74801701	+	10.18236	NA	non-coding (NR_110837, exon 2 of 3)	non-coding (NR_110837, exon 2 of 3)	6486	NR_110837	101928514	Hs.617206	NR_110837		LOC101928514	-	uncharacterized LOC101928514	ncRNA
19-PTNLD28-TUMOR_peak_99828	chr8	102898374	102898486	+	10.18236	NA	intron (NM_001040628, intron 4 of 7)	intron (NM_001040628, intron 4 of 7)	-94991	NM_032041	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_88291	chr6	73486591	73486783	+	10.18236	NA	intron (NM_001160133, intron 1 of 14)	L2b|LINE|L2	146464	NR_120503	100507381	Hs.662412	NR_120503		KCNQ5-IT1	-	KCNQ5 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_87925	chr6	52099177	52099330	+	10.18236	NA	Intergenic	Intergenic	10045	NM_052872	112744	Hs.272295	NM_052872	HPRD:16224	IL17F	CANDF6|IL-17F|ML-1|ML1	interleukin 17F	protein-coding
19-PTNLD28-TUMOR_peak_42430	chr17	54458096	54458199	+	10.18236	NA	intron (NM_153228, intron 7 of 16)	L1PA3|LINE|L1	-212913	NM_005450	9241	Hs.248201	NM_005450	HPRD:04291	NOG	SYM1|SYNS1	noggin	protein-coding
19-PTNLD28-TUMOR_peak_83008	chr5	146796811	146797209	+	10.18236	NA	intron (NM_001197294, intron 3 of 13)	intron (NM_001197294, intron 3 of 13)	36250	NM_001387	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_36437	chr16	14727958	14728074	+	10.18236	NA	intron (NM_016561, intron 1 of 7)	intron (NM_016561, intron 1 of 7)	1348	NM_016561	51283	Hs.435556	NM_016561	HPRD:16548	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
19-PTNLD28-TUMOR_peak_70102	chr3	120514014	120514121	+	10.18236	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	52509	NM_005513	2960	Hs.445272	NM_005513	HPRD:01799	GTF2E1	FE|TF2E1|TFIIE-A	general transcription factor IIE, polypeptide 1, alpha 56kDa	protein-coding
19-PTNLD28-TUMOR_peak_65305	chr22	36327099	36327223	+	10.18236	NA	intron (NM_001082579, intron 2 of 13)	intron (NM_001082579, intron 2 of 13)	-90531	NM_014309	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_108394	chrX	53567556	53567713	+	10.18236	NA	intron (NM_031407, intron 74 of 83)	intron (NM_031407, intron 74 of 83)	15668	NR_029513	407054		NR_029513		MIR98	MIRN98|hsa-mir-98|miR-98	microRNA 98	ncRNA
19-PTNLD28-TUMOR_peak_106878	chr9	140563831	140564008	+	10.18236	NA	intron (NM_001145527, intron 1 of 15)	intron (NM_001145527, intron 1 of 15)	50475	NM_024757	79813	Hs.495511	NM_024757	HPRD:07383	EHMT1	EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KMT1D|bA188C12.1	euchromatic histone-lysine N-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_31573	chr14	87139854	87139983	+	10.18236	NA	Intergenic	L2a|LINE|L2	-232204	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LOC283585	-	uncharacterized LOC283585	ncRNA
19-PTNLD28-TUMOR_peak_52844	chr2	55347814	55347949	+	10.18236	NA	Intergenic	Intergenic	-70147	NM_153828	57142	Hs.637850	NM_007008	HPRD:07259	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
19-PTNLD28-TUMOR_peak_27068	chr12	126459000	126459198	+	10.18236	NA	intron (NR_034132, intron 1 of 5)	MER11D|LTR|ERVK	8821	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LINC00939	-	long intergenic non-protein coding RNA 939	ncRNA
19-PTNLD28-TUMOR_peak_63430	chr21	38219614	38219719	+	10.18236	NA	intron (NM_001242785, intron 7 of 11)	intron (NM_001242785, intron 7 of 11)	119290	NM_001242784	3141	Hs.371350	NM_000411	HPRD:08360	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
19-PTNLD28-TUMOR_peak_109446	chrX	129419179	129419308	+	10.18236	NA	Intergenic	HERV4_I-int|LTR|ERV1	-16321	NM_017666	55609	Hs.308418	NM_017666	HPRD:06526	ZNF280C	SUHW3|ZNF633	zinc finger protein 280C	protein-coding
19-PTNLD28-TUMOR_peak_104250	chr9	87734041	87734208	+	10.18236	NA	Intergenic	Intergenic	448832	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_53016	chr2	62823449	62823613	+	10.18236	NA	Intergenic	Intergenic	-77455	NM_001142615	23301	Hs.271667	NM_015252	HPRD:10109	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_93041	chr7	69074960	69075299	+	10.18236	NA	intron (NM_001127231, intron 1 of 17)	intron (NM_001127231, intron 1 of 17)	11224	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_14949	chr10	95136273	95136398	+	10.18236	NA	intron (NM_133337, intron 21 of 52)	intron (NM_133337, intron 21 of 52)	105739	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_103398	chr9	65585773	65585882	+	10.18236	NA	Intergenic	Intergenic	-76217	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_17912	chr11	33664096	33664296	+	10.18236	NA	intron (NM_012194, intron 15 of 19)	LTR10F|LTR|ERV1	58090	NM_001166692	100131378	Hs.709466	NM_001166692		C11orf91	-	chromosome 11 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_14883	chr10	93058168	93058362	+	10.18236	NA	Intergenic	Intergenic	77906	NR_046310	84333	Hs.500512	NM_032373	HPRD:17825	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
19-PTNLD28-TUMOR_peak_20893	chr11	103196806	103196958	+	10.18236	NA	intron (NM_001080463, intron 83 of 89)	L1P4a|LINE|L1	216722	NM_001080463	79659	Hs.503721	NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein, cytoplasmic 2, heavy chain 1	protein-coding
19-PTNLD28-TUMOR_peak_83778	chr5	168499353	168499503	+	10.18236	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	59196	NR_109897	728095	Hs.145601	NR_109897	ENSG00000248222	CTB-174D11.1	-	uncharacterized LOC728095	ncRNA
19-PTNLD28-TUMOR_peak_72575	chr3	179025914	179026054	+	10.18236	NA	Intergenic	HAL1|LINE|L1	-15567	NM_016331	51193	Hs.632578	NM_016331	HPRD:15882	ZNF639	6230400O18Rik|ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
19-PTNLD28-TUMOR_peak_93681	chr7	81442533	81442683	+	10.18236	NA	Intergenic	AluJb|SINE|Alu	-43156	NM_000601	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_66162	chr3	529395	529705	+	10.18236	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-102072	NR_110739	101927193	Hs.677744	NR_110739		CHL1-AS1	-	CHL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21381	chr11	116512362	116512492	+	10.18236	NA	Intergenic	Intergenic	131287	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_14700	chr10	87395470	87395681	+	10.18236	NA	intron (NM_017551, intron 13 of 15)	L2b|LINE|L2	58087	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102050	chr9	4769454	4769588	+	10.18236	NA	Intergenic	Intergenic	-23313	NM_001286700	10171	Hs.194121	NM_005772	HPRD:10189	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_45513	chr18	44116556	44116752	+	10.18236	NA	intron (NM_144612, intron 26 of 39)	intron (NM_144612, intron 26 of 39)	-17605	NM_001145473	125336	Hs.345877	NM_144612	HPRD:08316	LOXHD1	DFNB77|LH2D1	lipoxygenase homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_1950	chr1	30397090	30397308	+	10.18236	NA	Intergenic	Intergenic	113260	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_63425	chr21	38145526	38145662	+	10.18236	NA	intron (NM_001242785, intron 7 of 11)	intron (NM_001242785, intron 7 of 11)	73603	NM_009586	6493	Hs.146186	NM_005069	HPRD:02935	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded family bHLH transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_108621	chrX	68209779	68209924	+	10.18236	NA	Intergenic	Intergenic	161011	NM_004429	1947	Hs.144700	NM_004429	HPRD:02072	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin-B1	protein-coding
19-PTNLD28-TUMOR_peak_98095	chr8	32631094	32631263	+	10.18236	NA	Intergenic	Intergenic	51827	NM_001159996	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_62989	chr21	27922775	27922890	+	10.18236	NA	intron (NM_052954, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	22749	NM_052954	116159	Hs.37445	NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine/tyrosine-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_79762	chr5	45838364	45838469	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-142196	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
19-PTNLD28-TUMOR_peak_75434	chr4	57507652	57507786	+	10.18236	NA	Intergenic	Intergenic	14969	NM_001145459	84525	Hs.619396	NM_032495	HPRD:06280	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
19-PTNLD28-TUMOR_peak_272	chr1	3326844	3326963	+	10.18236	NA	intron (NM_022114, intron 8 of 16)	intron (NM_022114, intron 8 of 16)	-44244	NM_014448	27237	Hs.87435	NM_014448	HPRD:12478	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
19-PTNLD28-TUMOR_peak_97993	chr8	29755354	29755540	+	10.18236	NA	Intergenic	Intergenic	-23582	NR_024473	286135	Hs.376840	NR_024473	ENSG00000253279	FAM183CP	-	family with sequence similarity 183, member C, pseudogene	ncRNA
19-PTNLD28-TUMOR_peak_79401	chr5	33526645	33526782	+	10.18236	NA	TTS (NM_030955)	TTS (NM_030955)	85831	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_104030	chr9	81167780	81168069	+	10.18236	NA	Intergenic	Intergenic	255933	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_69669	chr3	109362600	109362694	+	10.18236	NA	Intergenic	Intergenic	233810	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_101790	chr8	145869981	145870167	+	10.18236	NA	Intergenic	Intergenic	-31186	NM_025251	80728	Hs.148988	NM_025251	HPRD:17224	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
19-PTNLD28-TUMOR_peak_89996	chr6	150903314	150903468	+	10.18236	NA	Intergenic	Intergenic	-17608	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_99961	chr8	105772059	105772161	+	10.18236	NA	Intergenic	Intergenic	-170858	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_78131	chr4	177909502	177909693	+	10.18236	NA	Intergenic	LTR33A_|LTR|ERVL	-195698	NM_005429	7424	Hs.435215	NM_005429	HPRD:03317	VEGFC	Flt4-L|LMPH1D|VRP	vascular endothelial growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_63487	chr21	39251425	39251567	+	10.18236	NA	intron (NM_002240, intron 1 of 3)	intron (NM_002240, intron 1 of 3)	37245	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_108565	chrX	64909383	64909514	+	10.18236	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	21937	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_71853	chr3	155187305	155187464	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	-175895	NR_037902	100507537	Hs.518341	NR_037902	ENSG00000240045	LOC100507537	-	uncharacterized LOC100507537	ncRNA
19-PTNLD28-TUMOR_peak_85434	chr6	12603753	12603873	+	10.18236	NA	Intergenic	Intergenic	-113224	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_43191	chr17	70000184	70000437	+	10.18236	NA	Intergenic	Intergenic	21810	NR_110876	102723505	Hs.547482	NR_110876		LOC102723505	-	uncharacterized LOC102723505	ncRNA
19-PTNLD28-TUMOR_peak_38734	chr16	75130773	75130894	+	10.18236	NA	intron (NM_032268, intron 2 of 4)	intron (NM_032268, intron 2 of 4)	19837	NM_194436	197257	Hs.380929	NM_153486	HPRD:06318	LDHD	DLD	lactate dehydrogenase D	protein-coding
19-PTNLD28-TUMOR_peak_62790	chr21	15646094	15646396	+	10.18236	NA	non-coding (NR_003088, exon 1 of 5)	non-coding (NR_003088, exon 1 of 5)	125	NR_003087	150000	Hs.366575	NM_138726	HPRD:10586	ABCC13	C21orf73|PRED6	ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31677	chr14	91472185	91472307	+	10.18236	NA	intron (NM_182398, intron 1 of 12)	intron (NM_182398, intron 1 of 12)	54747	NM_182398	9252	Hs.510225	NM_004755	HPRD:06789	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase, 90kDa, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_5443	chr1	110554366	110554578	+	10.18236	NA	intron (NM_001242676, intron 3 of 16)	intron (NM_001242676, intron 3 of 16)	7902	NM_001242675	10768	Hs.743973	NM_006621	HPRD:07613	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_99457	chr8	90230859	90231018	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-539037	NM_003821	8767	Hs.103755	NM_003821	HPRD:04585	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_23243	chr12	15341050	15341349	+	10.18236	NA	intron (NM_032918, intron 2 of 4)	intron (NM_032918, intron 2 of 4)	33212	NM_032918	85004	Hs.199487	NM_032918	HPRD:15238	RERG	-	RAS-like, estrogen-regulated, growth inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_91958	chr7	33934979	33935214	+	10.18236	NA	Intergenic	Intergenic	-9427	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_101727	chr8	145288581	145288692	+	10.18236	NA	intron (NM_001288814, intron 13 of 41)	L1MB3|LINE|L1	29004	NR_107057	102465906		NR_107057		MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
19-PTNLD28-TUMOR_peak_23414	chr12	25079661	25079759	+	10.18236	NA	intron (NM_005504, intron 1 of 10)	SVA_C|Other|Other	22683	NM_001178091	586	Hs.438993	NM_005504	HPRD:00216	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino-acid transaminase 1, cytosolic	protein-coding
19-PTNLD28-TUMOR_peak_89519	chr6	134245227	134245387	+	10.18236	NA	Intergenic	Intergenic	-28001	NM_001253676	9519	Hs.486507	NM_004865		TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TBP-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31327	chr14	75733864	75734045	+	10.18236	NA	Intergenic	Intergenic	-11527	NM_005252	2353	Hs.25647	NM_005252	HPRD:01275	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_46981	chr19	7660708	7660851	+	10.18236	NA	promoter-TSS (NM_020902)	promoter-TSS (NM_020902)	-9	NM_020902	57662	Hs.17686	NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin-associated protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_32398	chr14	106541852	106541953	+	10.18236	NA	Intergenic	L1PBb|LINE|L1	-103544	NR_002224	8755	Hs.662288	NR_002224	ENSG00000233988	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_44490	chr18	9362986	9363123	+	10.18236	NA	intron (NM_020648, intron 3 of 4)	intron (NM_020648, intron 3 of 4)	28289	NM_020648	57045	Hs.514685	NM_020648	HPRD:05443	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_68805	chr3	65025450	65025611	+	10.18236	NA	Intergenic	Intergenic	319847	NR_030317	693126		NR_030317	miRBase:MI0003598	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
19-PTNLD28-TUMOR_peak_15197	chr10	101426837	101427197	+	10.18236	NA	intron (NM_020354, intron 3 of 12)	intron (NM_020354, intron 3 of 12)	7754	NM_020354	57089	Hs.28326	NM_020354		ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
19-PTNLD28-TUMOR_peak_76771	chr4	119786390	119786499	+	10.18236	NA	intron (NM_001286754, intron 1 of 4)	LTR50|LTR|ERVL	14601	NM_001286754	171024	Hs.655519	NM_133477	HPRD:15456	SYNPO2	-	synaptopodin 2	protein-coding
19-PTNLD28-TUMOR_peak_44821	chr18	19971569	19971975	+	10.18236	NA	Intergenic	Intergenic	26106	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_22883	chr12	7958024	7958132	+	10.18236	NA	Intergenic	AluSz6|SINE|Alu	16086	NM_024865	79923	Hs.635882	NM_024865	HPRD:06397	NANOG	-	Nanog homeobox	protein-coding
19-PTNLD28-TUMOR_peak_31831	chr14	94603113	94603279	+	10.18236	NA	Intergenic	Intergenic	-7239	NM_032036	83982	Hs.94695	NM_032036	HPRD:13291	IFI27L2	FAM14A|ISG12B|TLH29	interferon, alpha-inducible protein 27-like 2	protein-coding
19-PTNLD28-TUMOR_peak_1521	chr1	24397391	24397647	+	10.18236	NA	intron (NM_152372, intron 25 of 36)	MER20B|DNA|hAT-Charlie	41146	NM_152372	127294	Hs.523413	NM_152372	HPRD:08200	MYOM3	-	myomesin 3	protein-coding
19-PTNLD28-TUMOR_peak_76493	chr4	106830991	106831108	+	10.18236	NA	intron (NM_001033047, intron 2 of 11)	intron (NM_001033047, intron 2 of 11)	14452	NM_001184690	255743	Hs.518921	NM_198278	HPRD:14141	NPNT	EGFL6L|POEM	nephronectin	protein-coding
19-PTNLD28-TUMOR_peak_37733	chr16	50020559	50020707	+	10.18236	NA	Intergenic	MER51A|LTR|ERV1	-38484	NR_104042	255919	Hs.59134	NM_153261	HPRD:08784	CNEP1R1	C16orf69|NEP1-R1|TMEM188|TMP125	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_38663	chr16	72866587	72866683	+	10.18236	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	215639	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_77070	chr4	129901223	129901336	+	10.18236	NA	intron (NM_144643, intron 9 of 20)	intron (NM_144643, intron 9 of 20)	113483	NM_001300898	132320	Hs.654690	NM_144643	HPRD:08700	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
19-PTNLD28-TUMOR_peak_28854	chr13	101045101	101045247	+	10.18236	NA	intron (NM_000282, intron 19 of 23)	MIRc|SINE|MIR	88095	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103166	chr9	41424480	41424589	+	10.18236	NA	Intergenic	Intergenic	-76145	NM_015667	26165	Hs.123004	NM_015667	HPRD:12954	SPATA31A7	C9orf36A|FAM75A4|FAM75A7|SPATA31A4	SPATA31 subfamily A, member 7	protein-coding
19-PTNLD28-TUMOR_peak_23442	chr12	25950365	25950522	+	10.18236	NA	Intergenic	Intergenic	76569	NR_036188	100422897		NR_036188		MIR4302	-	microRNA 4302	ncRNA
19-PTNLD28-TUMOR_peak_18005	chr11	34541521	34541632	+	10.18236	NA	Intergenic	Intergenic	-6229	NM_001243080	2001	Hs.11713	NM_001422	HPRD:05525	ELF5	ESE2	E74-like factor 5 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_38788	chr16	75798196	75798316	+	10.18236	NA	Intergenic	Intergenic	116621	NM_018975	54386	Hs.301419	NM_018975	HPRD:05452	TERF2IP	DRIP5|RAP1	telomeric repeat binding factor 2, interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_36991	chr16	27740194	27740320	+	10.18236	NA	intron (NM_015202, intron 14 of 27)	intron (NM_015202, intron 14 of 27)	159221	NM_144675	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_68546	chr3	57568553	57568874	+	10.18236	NA	intron (NM_001660, intron 3 of 5)	MER20|DNA|hAT-Charlie	14502	NM_001660	378	Hs.652183	NM_001660	HPRD:03107	ARF4	ARF2	ADP-ribosylation factor 4	protein-coding
19-PTNLD28-TUMOR_peak_98714	chr8	52034528	52034702	+	10.18236	NA	Intergenic	LTR1|LTR|ERV1	687390	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_74765	chr4	24162149	24162250	+	10.18236	NA	Intergenic	Intergenic	-270499	NM_013261	10891	Hs.527078	NM_013261	HPRD:05155	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_67134	chr3	23211937	23212037	+	10.18236	NA	Intergenic	LTR78B|LTR|ERV1	-32797	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_45801	chr18	50668276	50668637	+	10.18236	NA	intron (NM_005215, intron 7 of 28)	intron (NM_005215, intron 7 of 28)	-426361	NR_110798	102724651	Hs.123442	NR_110798		LOC102724651	-	uncharacterized LOC102724651	ncRNA
19-PTNLD28-TUMOR_peak_109214	chrX	112756331	112756556	+	10.18236	NA	intron (NR_110399, intron 3 of 3)	MER58C|DNA|hAT-Charlie	470488	NR_110399	101928437	Hs.640112	NR_110399		LOC101928437	-	uncharacterized LOC101928437	ncRNA
19-PTNLD28-TUMOR_peak_105128	chr9	107950196	107950307	+	10.18236	NA	Intergenic	L1PA12|LINE|L1	-56643	NM_080546	23446	Hs.573495	NM_022109	HPRD:16197	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 (choline transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_78148	chr4	181616997	181617253	+	10.18236	NA	Intergenic	Intergenic	463177	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
19-PTNLD28-TUMOR_peak_59723	chr20	8528052	8528167	+	10.18236	NA	intron (NM_015192, intron 3 of 31)	L2b|LINE|L2	415197	NM_015192	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_12241	chr10	18270756	18270981	+	10.18236	NA	intron (NM_152725, intron 6 of 11)	intron (NM_152725, intron 6 of 11)	28623	NR_038419	100129213	Hs.568816	NR_038419	ENSG00000226083	SLC39A12-AS1	-	SLC39A12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108651	chrX	69388556	69388762	+	10.18236	NA	Intergenic	Intergenic	-8677	NM_198512	347516	Hs.454355	NM_198512	HPRD:13141	DGAT2L6	DC3	diacylglycerol O-acyltransferase 2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_20544	chr11	90889346	90889552	+	10.18236	NA	Intergenic	Intergenic	-600424	NR_039711	100616186		NR_039711	miRBase:MI0016852	MIR4490	-	microRNA 4490	ncRNA
19-PTNLD28-TUMOR_peak_100057	chr8	108907584	108907701	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	187789	NM_001282863	340419	Hs.444834	NM_178565	HPRD:17536	RSPO2	CRISTIN2	R-spondin 2	protein-coding
19-PTNLD28-TUMOR_peak_36513	chr16	15776063	15776179	+	10.18236	NA	intron (NM_017668, intron 4 of 8)	AluJb|SINE|Alu	32038	NM_017668	54820	Hs.655378	NM_017668	HPRD:14815	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
19-PTNLD28-TUMOR_peak_26457	chr12	116602829	116602926	+	10.18236	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	-16418	NR_030351	693205		NR_030351		MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
19-PTNLD28-TUMOR_peak_76939	chr4	124486049	124486213	+	10.18236	NA	Intergenic	Intergenic	-87809	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_91340	chr7	15436249	15436447	+	10.18236	NA	intron (NM_001004320, intron 5 of 12)	LTR12D|LTR|ERV1	165292	NM_001004320	392636	Hs.670634	NM_001004320	HPRD:13362	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding
19-PTNLD28-TUMOR_peak_42460	chr17	55087498	55087635	+	10.18236	NA	Intergenic	ERVL-E-int|LTR|ERVL	32098	NM_021626	59342	Hs.514950	NM_021626	HPRD:10194	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_38866	chr16	79085788	79085881	+	10.18236	NA	intron (NM_001291997, intron 7 of 7)	LTR10C|LTR|ERV1	548788	NM_005360	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_80981	chr5	81454930	81455035	+	10.18236	NA	intron (NM_031482, intron 3 of 7)	MER44B|DNA|TcMar-Tigger	119253	NM_001025	6228	Hs.527193	NM_001025	HPRD:04729	RPS23	S23	ribosomal protein S23	protein-coding
19-PTNLD28-TUMOR_peak_16191	chr10	127706670	127706911	+	10.18236	NA	intron (NM_003474, intron 22 of 22)	intron (NM_003474, intron 22 of 22)	-44948	NR_102707	101410540	Hs.557889	NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93939	chr7	92382002	92382144	+	10.18236	NA	intron (NM_001259, intron 3 of 7)	MER125|DNA|DNA	81158	NM_001259	1021	Hs.119882	NM_001259	HPRD:04533	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_98050	chr8	30646120	30646297	+	10.18236	NA	intron (NM_001009552, intron 6 of 6)	L1M4b|LINE|L1	24144	NM_001009552	5516	Hs.491440	NM_004156	HPRD:01487	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2, catalytic subunit, beta isozyme	protein-coding
19-PTNLD28-TUMOR_peak_56864	chr2	169936877	169937019	+	10.18236	NA	promoter-TSS (NM_001142271)	promoter-TSS (NM_001142271)	-669	NM_001142271	10170	Hs.179608	NM_005771	HPRD:09916	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4	dehydrogenase/reductase (SDR family) member 9	protein-coding
19-PTNLD28-TUMOR_peak_67025	chr3	18176330	18176508	+	10.18236	NA	intron (NM_001257177, intron 4 of 4)	intron (NM_001257177, intron 4 of 4)	172355	NM_001257177	339862	Hs.652981	NM_001257177		LOC339862	-	uncharacterized LOC339862	protein-coding
19-PTNLD28-TUMOR_peak_105790	chr9	122924212	122924346	+	10.18236	NA	Intergenic	Intergenic	83049	NR_029604	406939		NR_029604	miRBase:MI0000262	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
19-PTNLD28-TUMOR_peak_59643	chr20	4856330	4856655	+	10.18236	NA	intron (NM_005116, intron 9 of 16)	intron (NM_005116, intron 9 of 16)	-52201	NM_014737	9770	Hs.631504	NM_014737	HPRD:15218	RASSF2	CENP-34|RASFADIN	Ras association (RalGDS/AF-6) domain family member 2	protein-coding
19-PTNLD28-TUMOR_peak_88922	chr6	105376107	105376386	+	10.18236	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	12156	NR_046407	100113403	Hs.649249	NR_046407	ENSG00000203809	LINC00577	C6orf220|dJ439I14.1	long intergenic non-protein coding RNA 577	ncRNA
19-PTNLD28-TUMOR_peak_91948	chr7	33567100	33567349	+	10.18236	NA	intron (NM_198428, intron 20 of 22)	L1PA2|LINE|L1	-377299	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_68524	chr3	57022966	57023135	+	10.18236	NA	intron (NM_001128615, intron 2 of 12)	intron (NM_001128615, intron 2 of 12)	48982	NR_046572	100874200	Hs.549631	NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4730	chr1	89078542	89078677	+	10.18236	NA	intron (NR_110682, intron 1 of 3)	AluJr|SINE|Alu	-71313	NM_006256	5586	Hs.440833	NM_006256	HPRD:03972	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
19-PTNLD28-TUMOR_peak_40045	chr17	7997283	7997406	+	10.18236	NA	Intergenic	Intergenic	5970	NR_036201	100422983		NR_036201	miRBase:MI0015846	MIR4314	-	microRNA 4314	ncRNA
19-PTNLD28-TUMOR_peak_30025	chr14	40832202	40832332	+	10.18236	NA	Intergenic	LTR23|LTR|ERV1	-591649	NR_109758	644919	Hs.434414	NR_109757		LOC644919	-	uncharacterized LOC644919	ncRNA
19-PTNLD28-TUMOR_peak_40148	chr17	9159290	9159423	+	10.18236	NA	intron (NM_004853, intron 7 of 7)	MIRb|SINE|MIR	-76921	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_15575	chr10	111773511	111773669	+	10.18236	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-5451	NR_038943	100505933	Hs.604103	NR_038943		ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21467	chr11	117882962	117883126	+	10.18236	NA	Intergenic	Intergenic	25938	NM_001558	3587	Hs.504035	NM_001558	HPRD:00911	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_92071	chr7	38255449	38255652	+	10.18236	NA	intron (NM_032016, intron 4 of 8)	intron (NM_032016, intron 4 of 8)	37742	NM_032016	83930	Hs.309753	NM_032016	HPRD:18117	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_77289	chr4	141531322	141531486	+	10.18236	NA	Intergenic	Intergenic	32830	NR_077215	644962	Hs.676500	NR_077215		TNRC18P1	-	TNRC18P1	pseudo
19-PTNLD28-TUMOR_peak_8919	chr1	186678121	186678240	+	10.18236	NA	Intergenic	AluY|SINE|Alu	28394	NR_125801	103752588	Hs.441636	NR_125801		PACERR	PACER|PTGS2-AS1	PTGS2 antisense NFKB1 complex-mediated expression regulator RNA	ncRNA
19-PTNLD28-TUMOR_peak_40299	chr17	15587508	15587686	+	10.18236	NA	Intergenic	Intergenic	-1404	NM_006470	10626	Hs.123534	NM_006470	HPRD:15552	TRIM16	EBBP	tripartite motif containing 16	protein-coding
19-PTNLD28-TUMOR_peak_33434	chr15	45547117	45547274	+	10.18236	NA	intron (NR_120335, intron 3 of 4)	AluJb|SINE|Alu	2767	NM_004212	9153	Hs.367833	NM_004212	HPRD:07069	SLC28A2	CNT2|HCNT2|HsT17153|SPNT1	solute carrier family 28 (concentrative nucleoside transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_69332	chr3	94219084	94219216	+	10.18236	NA	Intergenic	LTR16E2|LTR|ERVL	-437083	NM_001195643	200895	Hs.718516	NM_176815	HPRD:11246	DHFRL1	DHFRP4	dihydrofolate reductase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_50721	chr2	254237	254560	+	10.18236	NA	intron (NM_001282682, intron 1 of 10)	intron (NM_001282682, intron 1 of 10)	1942	NM_001282687	26751	Hs.515951	NM_015677	HPRD:15336	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_31394	chr14	77251242	77251428	+	10.18236	NA	intron (NR_104183, intron 1 of 2)	intron (NR_104183, intron 1 of 2)	1732	NR_104183	100506603	Hs.673984	NR_104183		LOC100506603	-	uncharacterized LOC100506603	ncRNA
19-PTNLD28-TUMOR_peak_75100	chr4	42570781	42570879	+	10.18236	NA	intron (NM_001105529, intron 14 of 35)	intron (NM_001105529, intron 14 of 35)	88292	NM_001105529	10396	Hs.435052	NM_006095	HPRD:16527	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_66117	chr22	50805100	50805207	+	10.18236	NA	intron (NM_001242900, intron 1 of 22)	L1MEc|LINE|L1	23407	NM_001242900	9701	Hs.449098	NM_014678	HPRD:11102	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6, regulatory subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_66901	chr3	15381506	15381611	+	10.18236	NA	intron (NM_001018009, intron 1 of 8)	L3|LINE|CR1	1343	NM_001018009	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_63117	chr21	32533649	32533815	+	10.18236	NA	intron (NM_003253, intron 17 of 28)	intron (NM_003253, intron 17 of 28)	-122937	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_26441	chr12	114020430	114020705	+	10.18236	NA	Intergenic	Intergenic	-110690	NM_022363	64211	Hs.302029	NM_022363		LHX5	-	LIM homeobox 5	protein-coding
19-PTNLD28-TUMOR_peak_18051	chr11	35236366	35236700	+	10.18236	NA	intron (NM_001202555, intron 7 of 9)	intron (NM_001202555, intron 7 of 9)	76116	NM_001202556	960	Hs.502328	NM_000610	HPRD:00115	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
19-PTNLD28-TUMOR_peak_18131	chr11	37254573	37254706	+	10.18236	NA	Intergenic	Intergenic	-634810	NM_001243786	5897	Hs.714519	NM_000536	HPRD:08913	RAG2	RAG-2	recombination activating gene 2	protein-coding
19-PTNLD28-TUMOR_peak_105061	chr9	104311970	104312073	+	10.18236	NA	intron (NM_019592, intron 9 of 19)	LTR13|LTR|ERVK	15890	NM_019592	56254	Hs.729085	NM_019592	HPRD:07410	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_86054	chr6	25720769	25720899	+	10.18236	NA	Intergenic	L2c|LINE|L2	5956	NM_170745	221613	Hs.406739	NM_170745	HPRD:13653	HIST1H2AA	H2AA|H2AFR|bA317E16.2	histone cluster 1, H2aa	protein-coding
19-PTNLD28-TUMOR_peak_68265	chr3	51200629	51200804	+	10.18236	NA	intron (NM_004947, intron 12 of 52)	intron (NM_004947, intron 12 of 52)	-221952	NM_006010	7873	Hs.436446	NM_006010	HPRD:03558	MANF	ARMET|ARP	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_68703	chr3	62783734	62783916	+	10.18236	NA	intron (NM_183393, intron 1 of 26)	MLT2A2|LTR|ERVL	77239	NM_003716	8618	Hs.654933	NM_003716	HPRD:05236	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
19-PTNLD28-TUMOR_peak_95506	chr7	134409510	134409612	+	10.18236	NA	Intergenic	Intergenic	-54603	NM_004342	800	Hs.490203	NM_004342	HPRD:00251	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
19-PTNLD28-TUMOR_peak_104455	chr9	91862495	91862609	+	10.18236	NA	Intergenic	LTR8A|LTR|ERV1	-63561	NM_001827	1164	Hs.83758	NM_001827	HPRD:00300	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_82576	chr5	139243801	139243908	+	10.18236	NA	intron (NM_013982, intron 5 of 10)	intron (NM_013982, intron 5 of 10)	68448	NM_032289	84249	Hs.21963	NM_032289	HPRD:15190	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_86192	chr6	26999196	26999329	+	10.18236	NA	Intergenic	Intergenic	-11177	NR_026776	100270746	Hs.590428	NR_026776		LOC100270746	-	uncharacterized LOC100270746	ncRNA
19-PTNLD28-TUMOR_peak_83337	chr5	152761444	152761547	+	10.18236	NA	Intergenic	L1PA4|LINE|L1	-108589	NM_001258020	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_59878	chr20	13837155	13837305	+	10.18236	NA	intron (NM_001271539, intron 16 of 17)	intron (NM_001271539, intron 16 of 17)	71558	NR_029377	79133	Hs.472165	NM_024120	HPRD:12780	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
19-PTNLD28-TUMOR_peak_109343	chrX	119868643	119868870	+	10.18236	NA	Intergenic	Intergenic	-104751	NM_152692	29071	Hs.643920	NM_152692	HPRD:06462	C1GALT1C1	C1GALT2|C38H2-L1|COSMC|MST143|TNPS	C1GALT1-specific chaperone 1	protein-coding
19-PTNLD28-TUMOR_peak_13590	chr10	51712566	51712664	+	10.18236	NA	intron (NR_110767, intron 7 of 7)	intron (NR_110767, intron 7 of 7)	-35463	NM_001077665	414189	Hs.536158	NM_001077665	ENSG00000204149	AGAP6	AGAP-6|CTGLF3|bA324H6.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 6	protein-coding
19-PTNLD28-TUMOR_peak_25428	chr12	80046848	80046967	+	10.18236	NA	intron (NM_002583, intron 2 of 6)	AluSq2|SINE|Alu	37883	NM_002583	5074	Hs.643130	NM_002583		PAWR	PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
19-PTNLD28-TUMOR_peak_34823	chr15	81989902	81990029	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	-323547	NM_001080532	342125	Hs.253489	NM_001080532		TMC3	-	transmembrane channel-like 3	protein-coding
19-PTNLD28-TUMOR_peak_89719	chr6	140807274	140807473	+	10.18236	NA	Intergenic	Intergenic	-197578	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_83634	chr5	159954124	159954225	+	10.18236	NA	Intergenic	LTR18B|LTR|ERVL	41815	NR_029701	406938		NR_029701	miRBase:MI0000477	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
19-PTNLD28-TUMOR_peak_89697	chr6	139899542	139899661	+	10.18236	NA	Intergenic	Intergenic	-103868	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	ncRNA
19-PTNLD28-TUMOR_peak_79389	chr5	33312130	33312248	+	10.18236	NA	Intergenic	MARNA|DNA|TcMar-Mariner	-128613	NM_001258437	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_25618	chr12	94372446	94372664	+	10.18236	NA	Intergenic	MIR3|SINE|MIR	-169944	NM_005761	10154	Hs.584845	NM_005761	HPRD:05036	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
19-PTNLD28-TUMOR_peak_14503	chr10	79956769	79956925	+	10.18236	NA	Intergenic	L2b|LINE|L2	-51535	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
19-PTNLD28-TUMOR_peak_76337	chr4	97905143	97905244	+	10.18236	NA	Intergenic	MIRc|SINE|MIR	-382884	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102659	chr9	32928221	32928346	+	10.18236	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	73291	NR_036579	54840	Hs.20158	NM_017692	HPRD:05892	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
19-PTNLD28-TUMOR_peak_14781	chr10	89498217	89498306	+	10.18236	NA	intron (NM_001015880, intron 9 of 12)	AluJb|SINE|Alu	78785	NM_001015880	9060	Hs.524491	NM_004670	HPRD:04303	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_71794	chr3	152709909	152710024	+	10.18236	NA	Intergenic	LTR13|LTR|ERVK	157230	NM_002563	5028	Hs.654526	NM_002563	HPRD:03103	P2RY1	P2Y1	purinergic receptor P2Y, G-protein coupled, 1	protein-coding
19-PTNLD28-TUMOR_peak_33368	chr15	44330863	44331095	+	10.18236	NA	intron (NR_104455, intron 1 of 14)	L1PA7|LINE|L1	155665	NM_001286490	84978	Hs.578544	NM_032892	HPRD:17493	FRMD5	-	FERM domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_72140	chr3	162868998	162869103	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	152039	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_13810	chr10	62517432	62517635	+	10.18236	NA	Intergenic	Intergenic	-20556	NM_001170406	983	Hs.732435	NM_001786	HPRD:00302	CDK1	CDC2|CDC28A|P34CDC2	cyclin-dependent kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_94973	chr7	120527420	120527768	+	10.18236	NA	Intergenic	HERVH-int|LTR|ERV1	-29417	NM_012338	23554	Hs.16529	NM_012338	HPRD:15509	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
19-PTNLD28-TUMOR_peak_31388	chr14	77050690	77050862	+	10.18236	NA	Intergenic	Intergenic	-177459	NM_014909	22846	Hs.525479	NM_014909	HPRD:12353	VASH1	KIAA1036	vasohibin 1	protein-coding
19-PTNLD28-TUMOR_peak_81860	chr5	124126069	124126229	+	10.18236	NA	Intergenic	L2b|LINE|L2	-45344	NM_020747	57507	Hs.266616	NM_020747	HPRD:18357	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
19-PTNLD28-TUMOR_peak_45384	chr18	40316188	40316324	+	10.18236	NA	Intergenic	Intergenic	379401	NM_001272077	6014	Hs.464985	NM_002930	HPRD:15253	RIT2	RIBA|RIN|ROC2	Ras-like without CAAX 2	protein-coding
19-PTNLD28-TUMOR_peak_13326	chr10	46361694	46361875	+	10.18236	NA	Intergenic	SVA_C|Other|Other	-12459	NM_001291379	119016	Hs.536192	NM_133446	HPRD:16771	AGAP4	AGAP-4|AGAP-8|AGAP8|CTGLF1|CTGLF5|MRIP2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 4	protein-coding
19-PTNLD28-TUMOR_peak_5926	chr1	119180895	119181000	+	10.18236	NA	Intergenic	L1PA4|LINE|L1	351232	NM_152380	6913	Hs.146196	NM_152380	HPRD:16035	TBX15	TBX14	T-box 15	protein-coding
19-PTNLD28-TUMOR_peak_29357	chr14	21270015	21270168	+	10.18236	NA	exon (NM_002933, exon 2 of 2)	exon (NM_002933, exon 2 of 2)	467	NM_198232	6035	Hs.78224	NM_002933	HPRD:01591	RNASE1	RAC1|RIB1|RNS1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_74553	chr4	13162611	13162783	+	10.18236	NA	Intergenic	Intergenic	323292	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_74721	chr4	21236062	21236242	+	10.18236	NA	intron (NM_147182, intron 2 of 8)	(TA)n|Simple_repeat|Simple_repeat	69377	NM_147183	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_18170	chr11	41240340	41240531	+	10.18236	NA	intron (NM_001258419, intron 1 of 6)	AluY|SINE|Alu	240751	NM_001258419	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_108806	chrX	76267105	76267209	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-32200	NR_110406	101928469	Hs.640805	NR_110400		MIR325HG	MIR384HG	MIR325 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_81875	chr5	124605654	124605989	+	10.18236	NA	intron (NR_109882, intron 4 of 5)	intron (NR_109882, intron 4 of 5)	-223133	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
19-PTNLD28-TUMOR_peak_29920	chr14	35882531	35882703	+	10.18236	NA	Intergenic	Intergenic	-8657	NM_020529	4792	Hs.81328	NM_020529	HPRD:01235	NFKBIA	IKBA|MAD-3|NFKBI	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_98937	chr8	60607361	60607522	+	10.18236	NA	Intergenic	Intergenic	-575674	NM_014729	9760	Hs.491805	NM_014729	HPRD:12113	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
19-PTNLD28-TUMOR_peak_27360	chr13	20914896	20915241	+	10.18236	NA	Intergenic	MIRb|SINE|MIR	92917	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_31508	chr14	81453630	81453776	+	10.18236	NA	intron (NM_001018036, intron 1 of 8)	intron (NM_001018036, intron 1 of 8)	31834	NM_000369	7253	Hs.160411	NM_000369	HPRD:04537	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_31584	chr14	88336382	88336522	+	10.18236	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	123163	NM_001201401	2581	Hs.513439	NM_000153	HPRD:06057	GALC	-	galactosylceramidase	protein-coding
19-PTNLD28-TUMOR_peak_15081	chr10	98832648	98832832	+	10.18236	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	-29773	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46180	chr18	65984035	65984154	+	10.18236	NA	Intergenic	Intergenic	398259	NM_019022	54495	Hs.440534	NM_019022	HPRD:15591	TMX3	PDIA13|TXNDC10	thioredoxin-related transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_14918	chr10	94105492	94105683	+	10.18236	NA	intron (NM_017824, intron 3 of 5)	AluJb|SINE|Alu	54667	NM_017824	54708	Hs.573490	NM_017824	HPRD:07909	MARCH5	MARCH-V|MITOL|RNF153	membrane-associated ring finger (C3HC4) 5	protein-coding
19-PTNLD28-TUMOR_peak_16823	chr11	5226160	5226325	+	10.18236	NA	Intergenic	Intergenic	-4312	NM_001004760	283111	Hs.553670	NM_001004760	HPRD:17741	OR51V1	OR11-36|OR51A12	olfactory receptor, family 51, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_80929	chr5	79762513	79762665	+	10.18236	NA	intron (NM_001284236, intron 15 of 18)	L1M4|LINE|L1	-21211	NM_205548	167555	Hs.338182	NM_205548	HPRD:18272	FAM151B	UNQ9217	family with sequence similarity 151, member B	protein-coding
19-PTNLD28-TUMOR_peak_99978	chr8	106419188	106419298	+	10.18236	NA	intron (NM_012082, intron 1 of 7)	intron (NM_012082, intron 1 of 7)	88096	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_70000	chr3	117847878	117848039	+	10.18236	NA	Intergenic	L1M5|LINE|L1	-813965	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29665	chr14	27103937	27104095	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	-37056	NM_002515	4857	Hs.31588	NM_002515	HPRD:03693	NOVA1	Nova-1	neuro-oncological ventral antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_12534	chr10	26558835	26558934	+	10.18236	NA	intron (NM_000818, intron 9 of 16)	intron (NM_000818, intron 9 of 16)	53648	NM_001134366	2572	Hs.231829	NM_000818	HPRD:11817	GAD2	GAD65	glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)	protein-coding
19-PTNLD28-TUMOR_peak_67683	chr3	41158912	41159232	+	10.18236	NA	Intergenic	Intergenic	-81870	NM_001904	1499	Hs.476018	NM_001904	HPRD:00286	CTNNB1	CTNNB|MRD19|armadillo	catenin (cadherin-associated protein), beta 1, 88kDa	protein-coding
19-PTNLD28-TUMOR_peak_20319	chr11	79613511	79613692	+	10.18236	NA	Intergenic	Intergenic	-461906	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_69509	chr3	103280811	103281264	+	10.18236	NA	Intergenic	L1HS|LINE|L1	665068	NR_030330	693127		NR_030330	miRBase:MI0003612	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
19-PTNLD28-TUMOR_peak_52874	chr2	56128630	56128729	+	10.18236	NA	intron (NM_001039348, intron 5 of 11)	intron (NM_001039348, intron 5 of 11)	22619	NM_001039349	2202	Hs.76224	NM_004105	HPRD:03331	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin-like extracellular matrix protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68445	chr3	54498417	54498520	+	10.18236	NA	intron (NM_018398, intron 4 of 37)	L1PA3|LINE|L1	175416	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_40638	chr17	21023075	21023203	+	10.18236	NA	Intergenic	Intergenic	-7102	NM_015510	25979	Hs.386989	NM_015510	HPRD:13215	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
19-PTNLD28-TUMOR_peak_88260	chr6	72119879	72120043	+	10.18236	NA	non-coding (NR_026807, exon 4 of 4)	non-coding (NR_026807, exon 4 of 4)	-6637	NR_029504	407029		NR_029504	miRBase:MI0000088	MIR30A	MIRN30A	microRNA 30a	ncRNA
19-PTNLD28-TUMOR_peak_109140	chrX	108992138	108992327	+	10.18236	NA	Intergenic	LTR12C|LTR|ERV1	-15611	NM_004458	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_44495	chr18	9506132	9506333	+	10.18236	NA	intron (NM_006788, intron 1 of 9)	MER65C|LTR|ERV1	30702	NM_006788	10928	Hs.528993	NM_006788	HPRD:09013	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25736	chr12	97881417	97881542	+	10.18236	NA	intron (NR_024037, intron 2 of 8)	intron (NR_024037, intron 2 of 8)	-4208	NR_031653	100302289		NR_031653	miRBase:MI0006386	MIR1251	MIRN1251|hsa-mir-1251	microRNA 1251	ncRNA
19-PTNLD28-TUMOR_peak_24662	chr12	56465560	56465742	+	10.18236	NA	Intergenic	AluJb|SINE|Alu	-8158	NM_001982	2065	Hs.118681	NM_001982	HPRD:01820	ERBB3	ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_83443	chr5	155807957	155808155	+	10.18236	NA	intron (NM_001128209, intron 2 of 7)	intron (NM_001128209, intron 2 of 7)	54289	NM_000337	6444	Hs.387207	NM_000337	HPRD:03246	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_54617	chr2	103202581	103202826	+	10.18236	NA	Intergenic	Intergenic	-33463	NM_003048	6549	Hs.250083	NM_003048	HPRD:02756	SLC9A2	NHE2	solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2	protein-coding
19-PTNLD28-TUMOR_peak_9008	chr1	193558770	193558896	+	10.18236	NA	Intergenic	L2b|LINE|L2	284958	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_25488	chr12	85410301	85410442	+	10.18236	NA	intron (NM_001100917, intron 7 of 8)	MER44B|DNA|TcMar-Tigger	19684	NM_001100917	144448	Hs.156962	NM_001100917	ENSG00000231738	TSPAN19	-	tetraspanin 19	protein-coding
19-PTNLD28-TUMOR_peak_15125	chr10	99461292	99461431	+	10.18236	NA	Intergenic	LTR41|LTR|ERVL	-12104	NM_031484	83742	Hs.744073	NM_031484	HPRD:14364	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_68441	chr3	54434009	54434195	+	10.18236	NA	intron (NM_018398, intron 4 of 37)	L1HS|LINE|L1	239782	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90193	chr6	157073883	157074165	+	10.18236	NA	Intergenic	Intergenic	-25040	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_110390	chrY	59295673	59295955	+	10.18236	NA	Intergenic	MER21C|LTR|ERVL	-34438	NM_002186	3581	Hs.406228	NM_002186	HPRD:02052	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
19-PTNLD28-TUMOR_peak_59165	chr2	239800677	239800833	+	10.18236	NA	intron (NM_001271893, intron 1 of 1)	intron (NM_001271893, intron 1 of 1)	44082	NM_001271893	117581	Hs.422585	NM_057179	HPRD:09616	TWIST2	DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_69647	chr3	108468709	108468832	+	10.18236	NA	Intergenic	L1HS|LINE|L1	7360	NM_032579	84666	Hs.307047	NM_032579	HPRD:05734	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
19-PTNLD28-TUMOR_peak_88088	chr6	55443962	55444124	+	10.18236	NA	promoter-TSS (NM_001042406)	promoter-TSS (NM_001042406)	-31	NR_109869	54511	Hs.147054	NM_019036	HPRD:13663	HMGCLL1	bA418P12.1|er-cHL	3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_34349	chr15	71763705	71764016	+	10.18236	NA	intron (NM_024817, intron 6 of 16)	intron (NM_024817, intron 6 of 16)	-75681	NM_001286429	79875	Hs.387057	NM_024817	HPRD:07835	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_23883	chr12	44383129	44383230	+	10.18236	NA	intron (NM_001286212, intron 3 of 6)	intron (NM_001286212, intron 3 of 6)	153515	NM_001286213	84216	Hs.444668	NM_032256	HPRD:13193	TMEM117	-	transmembrane protein 117	protein-coding
19-PTNLD28-TUMOR_peak_17408	chr11	15991039	15991168	+	10.18236	NA	promoter-TSS (NR_106721)	promoter-TSS (NR_106721)	64	NR_106721	102464826		NR_106721		MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
19-PTNLD28-TUMOR_peak_81007	chr5	82265157	82265332	+	10.18236	NA	Intergenic	LTR10F|LTR|ERV1	94912	NR_003139	677765	Hs.693283	NR_003139		SCARNA18	U109	small Cajal body-specific RNA 18	ncRNA
19-PTNLD28-TUMOR_peak_74867	chr4	26789570	26789807	+	10.18236	NA	Intergenic	Intergenic	-72625	NM_001169117	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_99654	chr8	99097922	99098058	+	10.18236	NA	intron (NM_001170806, intron 1 of 1)	intron (NM_001170806, intron 1 of 1)	21240	NM_001170806	203111	Hs.171455	NM_173549	HPRD:08802	ERICH5	C8orf47	glutamate-rich 5	protein-coding
19-PTNLD28-TUMOR_peak_68261	chr3	51008999	51009111	+	10.18236	NA	intron (NM_004947, intron 5 of 52)	L1PA15-16|LINE|L1	296383	NM_004947	1795	Hs.476284	NM_004947	HPRD:10341	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
19-PTNLD28-TUMOR_peak_33733	chr15	58681788	58681959	+	10.18236	NA	Intergenic	Intergenic	-42302	NM_000236	3990	Hs.654472	NM_000236	HPRD:01058	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase, hepatic	protein-coding
19-PTNLD28-TUMOR_peak_53033	chr2	63923746	63923881	+	10.18236	NA	Intergenic	Intergenic	107528	NM_001199112	4190	Hs.526521	NM_005917	HPRD:01100	MDH1	HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1, NAD (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_9825	chr1	207904228	207904389	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	-21075	NM_002389	4179	Hs.510402	NM_002389	HPRD:00406	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
19-PTNLD28-TUMOR_peak_34814	chr15	81631030	81631375	+	10.18236	NA	intron (NM_001080532, intron 17 of 21)	intron (NM_001080532, intron 17 of 21)	14528	NR_120365	101929655	Hs.696654	NR_120365		LOC101929655	-	uncharacterized LOC101929655	ncRNA
19-PTNLD28-TUMOR_peak_38685	chr16	73266505	73266722	+	10.18236	NA	Intergenic	Intergenic	-88267	NM_207385	388289	Hs.371893	NM_207385	HPRD:16623	C16orf47	-	chromosome 16 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_38155	chr16	59397466	59397649	+	10.18236	NA	Intergenic	L1P1|LINE|L1	391538	NR_028471	644649	Hs.250392	NR_028471		APOOP5	-	apolipoprotein O pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_76617	chr4	111714591	111714932	+	10.18236	NA	Intergenic	Intergenic	-151482	NM_001204399	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_93944	chr7	92415441	92415644	+	10.18236	NA	intron (NM_001259, intron 2 of 7)	intron (NM_001259, intron 2 of 7)	47689	NM_001259	1021	Hs.119882	NM_001259	HPRD:04533	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_102556	chr9	27377302	27377401	+	10.18236	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-80214	NM_001161585	54586	Hs.163070	NM_020641	HPRD:12932	EQTN	AFAF|C9orf11|SPACA8|equatorin	equatorin, sperm acrosome associated	protein-coding
19-PTNLD28-TUMOR_peak_69584	chr3	107472469	107472607	+	10.18236	NA	intron (NM_001276286, intron 9 of 16)	intron (NM_001276286, intron 9 of 16)	124377	NR_024276	151658	Hs.159043	NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
19-PTNLD28-TUMOR_peak_89413	chr6	128564294	128564415	+	10.18236	NA	intron (NM_001291983, intron 2 of 18)	intron (NM_001291983, intron 2 of 18)	277465	NM_001291983	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_81491	chr5	109399623	109399813	+	10.18236	NA	Intergenic	Intergenic	180835	NR_033175	100289673	Hs.368405	NR_033175		LOC100289673	-	phosphoglycerate mutase family member 5 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_4166	chr1	66930614	66930770	+	10.18236	NA	Intergenic	Intergenic	-69133	NM_032291	84251	Hs.132121	NM_032291	HPRD:10910	SGIP1	-	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_77628	chr4	153141297	153141730	+	10.18236	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-117294	NR_104273	102191832	Hs.712524	NR_104273	ENSG00000270751	DEAR	DEspR	dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene	pseudo
19-PTNLD28-TUMOR_peak_17326	chr11	13581915	13582019	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-64400	NM_000315	5741	Hs.37045	NM_000315	HPRD:01345	PTH	PTH1	parathyroid hormone	protein-coding
19-PTNLD28-TUMOR_peak_49234	chr19	42817872	42817999	+	10.18236	NA	intron (NM_173633, intron 1 of 14)	CpG	458	NM_173633	284339	Hs.382075	NM_173633	HPRD:08300	TMEM145	-	transmembrane protein 145	protein-coding
19-PTNLD28-TUMOR_peak_45164	chr18	31296402	31296535	+	10.18236	NA	intron (NM_030632, intron 8 of 11)	intron (NM_030632, intron 8 of 11)	137927	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like transcriptional regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_109157	chrX	109485212	109485311	+	10.18236	NA	intron (NM_001025580, intron 1 of 4)	intron (NM_001025580, intron 1 of 4)	-16973	NR_004379	692226		NR_004379		SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
19-PTNLD28-TUMOR_peak_77810	chr4	158634563	158634799	+	10.18236	NA	Intergenic	Intergenic	141039	NR_026992	340017	Hs.428275	NR_026992	ENSG00000234111	LOC340017	-	uncharacterized LOC340017	ncRNA
19-PTNLD28-TUMOR_peak_12083	chr10	13116949	13117065	+	10.18236	NA	intron (NM_001282658, intron 3 of 6)	intron (NM_001282658, intron 3 of 6)	24766	NM_001282658	83643	Hs.498720	NM_031455	HPRD:13008	CCDC3	-	coiled-coil domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_59493	chr20	2212405	2212637	+	10.18236	NA	Intergenic	MER68|LTR|ERVL	24947	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
19-PTNLD28-TUMOR_peak_30103	chr14	46366777	46366886	+	10.18236	NA	Intergenic	LTR78|LTR|ERV1	-166531	NR_102701	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
19-PTNLD28-TUMOR_peak_80197	chr5	61265795	61265935	+	10.18236	NA	Intergenic	Intergenic	-234340	NR_105000	100506526	Hs.662277	NR_105000	ENSG00000251575	LOC100506526	-	uncharacterized LOC100506526	ncRNA
19-PTNLD28-TUMOR_peak_18605	chr11	56771398	56771562	+	10.18236	NA	Intergenic	Intergenic	15091	NM_001005323	390181	Hs.554520	NM_001005323	HPRD:15031	OR5AK2	-	olfactory receptor, family 5, subfamily AK, member 2	protein-coding
19-PTNLD28-TUMOR_peak_57330	chr2	183501563	183501697	+	10.18236	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-79138	NR_073365	54431	Hs.516632	NM_018981		DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ (Hsp40) homolog, subfamily C, member 10	protein-coding
19-PTNLD28-TUMOR_peak_34634	chr15	77356903	77357172	+	10.18236	NA	intron (NM_005724, intron 1 of 6)	intron (NM_005724, intron 1 of 6)	6533	NM_001168412	10099	Hs.744863	NM_005724	HPRD:15512	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
19-PTNLD28-TUMOR_peak_29671	chr14	27336472	27336587	+	10.18236	NA	Intergenic	Intergenic	-5810	NR_110041	101927081	Hs.97955	NR_110041	ENSG00000257612	LOC101927081	-	uncharacterized LOC101927081	ncRNA
19-PTNLD28-TUMOR_peak_75166	chr4	49070326	49070420	+	10.18236	NA	Intergenic	L1P1|LINE|L1	81714	NM_001286791	80157	Hs.479703	NM_025087	HPRD:08638	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_44571	chr18	10787412	10787558	+	10.18236	NA	intron (NM_022068, intron 15 of 51)	MIRb|SINE|MIR	125555	NR_110777	101927410	Hs.436902	NR_110777	ENSG00000260779	LOC101927410	-	uncharacterized LOC101927410	ncRNA
19-PTNLD28-TUMOR_peak_98747	chr8	53529042	53529134	+	10.18236	NA	Intergenic	Intergenic	-51067	NM_207413	389658	Hs.527111	NM_207413	HPRD:15623	FAM150A	UNQ9433	family with sequence similarity 150, member A	protein-coding
19-PTNLD28-TUMOR_peak_14831	chr10	91055605	91055772	+	10.18236	NA	Intergenic	Intergenic	-6018	NM_001547	3433	Hs.437609	NM_001547	HPRD:00913	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon-induced protein with tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_92978	chr7	67124132	67124314	+	10.18236	NA	Intergenic	Intergenic	323260	NR_108104	101929736	Hs.634050	NR_108104		LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
19-PTNLD28-TUMOR_peak_69303	chr3	90140898	90141001	+	10.18236	NA	Intergenic	Intergenic	984275	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_69497	chr3	102433975	102434100	+	10.18236	NA	Intergenic	Intergenic	280178	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33102	chr15	39109977	39110129	+	10.18236	NA	Intergenic	Intergenic	121254	NM_207444	400359	Hs.448785	NM_207444	HPRD:13418	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_104896	chr9	100716968	100717066	+	10.18236	NA	Intergenic	Intergenic	-9820	NM_018437	55363	Hs.176626	NM_018437	HPRD:17100	HEMGN	CT155|EDAG|EDAG-1|NDR	hemogen	protein-coding
19-PTNLD28-TUMOR_peak_12145	chr10	14602391	14602555	+	10.18236	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	11715	NM_001282699	83641	Hs.446315	NM_031453	HPRD:12575	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
19-PTNLD28-TUMOR_peak_59749	chr20	9480897	9481018	+	10.18236	NA	Intergenic	Intergenic	-14048	NM_001199897	24141	Hs.22920	NM_012261	HPRD:12736	LAMP5	BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-43	lysosomal-associated membrane protein family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_26074	chr12	107503640	107503868	+	10.18236	NA	Intergenic	MER41B|LTR|ERV1	-16119	NM_004075	1407	Hs.151573	NM_004075	HPRD:09050	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_35417	chr15	99091645	99091768	+	10.18236	NA	Intergenic	CpG	-34095	NM_182562	283777	Hs.668070	NM_182562	HPRD:08265	FAM169B	-	family with sequence similarity 169, member B	protein-coding
19-PTNLD28-TUMOR_peak_9025	chr1	195972166	195972362	+	10.18236	NA	Intergenic	MLT2A2|LTR|ERVL	579347	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_4186	chr1	67550005	67550096	+	10.18236	NA	Intergenic	L1HS|LINE|L1	-29970	NM_015139	23169	Hs.213642	NM_015139	HPRD:15372	SLC35D1	UGTREL7	solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1	protein-coding
19-PTNLD28-TUMOR_peak_108328	chrX	50582040	50582191	+	10.18236	NA	Intergenic	MamRep38|DNA|hAT	-25071	NM_020717	57477	Hs.420541	NM_020717	HPRD:17209	SHROOM4	SHAP	shroom family member 4	protein-coding
19-PTNLD28-TUMOR_peak_8409	chr1	177361632	177361795	+	10.18236	NA	Intergenic	Intergenic	221080	NM_021165	57795	Hs.495918	NM_021165	HPRD:13891	BRINP2	DBCCR1L2|FAM5B	bone morphogenetic protein/retinoic acid inducible neural-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_18957	chr11	62063106	62063264	+	10.18236	NA	TTS (NM_206998)	TTS (NM_206998)	3351	NM_206998	404552	Hs.473247	NM_206998	HPRD:15301	SCGB1D4	-	secretoglobin, family 1D, member 4	protein-coding
19-PTNLD28-TUMOR_peak_83523	chr5	157895581	157895699	+	10.18236	NA	Intergenic	L2c|LINE|L2	-58859	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_109248	chrX	116007742	116007918	+	10.18236	NA	Intergenic	Intergenic	-413636	NM_001017978	203413	Hs.97892	NM_001017978	HPRD:18577	CT83	CXorf61|KK-LC-1|KKLC1	cancer/testis antigen 83	protein-coding
19-PTNLD28-TUMOR_peak_51668	chr2	26653243	26653342	+	10.18236	NA	intron (NM_145038, intron 5 of 16)	intron (NM_145038, intron 5 of 16)	28508	NM_145038	92749	Hs.393714	NM_145038	HPRD:11312	DRC1	C2orf39|CCDC164|CILD21	dynein regulatory complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_75354	chr4	55189135	55189271	+	10.18236	NA	Intergenic	Intergenic	93939	NM_006206	5156	Hs.74615	NM_006206	HPRD:01429	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	platelet-derived growth factor receptor, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_95616	chr7	136343592	136343804	+	10.18236	NA	Intergenic	Intergenic	-209701	NM_001006627	1129	Hs.535891	NM_000739	HPRD:00328	CHRM2	HM2	cholinergic receptor, muscarinic 2	protein-coding
19-PTNLD28-TUMOR_peak_77691	chr4	154239976	154240155	+	10.18236	NA	intron (NM_015271, intron 8 of 11)	intron (NM_015271, intron 8 of 11)	-10102	NR_001562	303	Hs.546235	NR_001562		ANXA2P1	ANX2L1|ANX2P1|LPC2A	annexin A2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_25985	chr12	105917092	105917196	+	10.18236	NA	Intergenic	Intergenic	-180837	NR_110108	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_83235	chr5	150180763	150180870	+	10.18236	NA	Intergenic	Intergenic	23308	NM_032947	85027	Hs.29444	NM_032947	HPRD:12212	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_61176	chr20	42008278	42008454	+	10.18236	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-78138	NM_006275	6431	Hs.725336	NM_006275	HPRD:09054	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine/arginine-rich splicing factor 6	protein-coding
19-PTNLD28-TUMOR_peak_20267	chr11	78426630	78427053	+	10.18236	NA	intron (NM_001098816, intron 25 of 33)	MIRc|SINE|MIR	-140932	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_13697	chr10	57170455	57170639	+	10.18236	NA	Intergenic	Intergenic	-188203	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
19-PTNLD28-TUMOR_peak_45408	chr18	42217839	42217974	+	10.18236	NA	Intergenic	Intergenic	-42232	NM_001130110	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27731	chr13	31642045	31642272	+	10.18236	NA	Intergenic	Intergenic	94000	NM_001286503	10808	Hs.743267	NM_006644	HPRD:09990	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock 105kDa/110kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_87919	chr6	51824697	51824814	+	10.18236	NA	exon (NM_170724, exon 36 of 61)	exon (NM_170724, exon 36 of 61)	127668	NM_170724	5314	Hs.662050	NM_138694	HPRD:05987	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
19-PTNLD28-TUMOR_peak_46191	chr18	67463156	67463286	+	10.18236	NA	intron (NM_152721, intron 7 of 7)	intron (NM_152721, intron 7 of 7)	161011	NM_006566	10666	Hs.660130	NM_006566	HPRD:09252	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
19-PTNLD28-TUMOR_peak_17331	chr11	13781779	13781942	+	10.18236	NA	Intergenic	LTR78|LTR|ERV1	91654	NM_032228	84188	Hs.501991	NM_032228	HPRD:14724	FAR1	MLSTD2|SDR10E1	fatty acyl CoA reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_71993	chr3	158152351	158152449	+	10.18236	NA	intron (NM_001271834, intron 5 of 8)	intron (NM_001271834, intron 5 of 8)	136455	NR_104147	100996447	Hs.369810	NR_104147	ENSG00000243150	LOC100996447	-	uncharacterized LOC100996447	ncRNA
19-PTNLD28-TUMOR_peak_99549	chr8	95449192	95449338	+	10.18236	NA	promoter-TSS (NM_001256141)	promoter-TSS (NM_001256141)	-85	NM_001256141	100861412	Hs.30561	NM_001256141		FSBP	-	fibrinogen silencer binding protein	protein-coding
19-PTNLD28-TUMOR_peak_44564	chr18	10620784	10621027	+	10.18236	NA	Intergenic	Intergenic	-41025	NR_110777	101927410	Hs.436902	NR_110777	ENSG00000260779	LOC101927410	-	uncharacterized LOC101927410	ncRNA
19-PTNLD28-TUMOR_peak_97864	chr8	27721452	27721592	+	10.18236	NA	Intergenic	Intergenic	22111	NR_036249	100422828		NR_036249		MIR4287	-	microRNA 4287	ncRNA
19-PTNLD28-TUMOR_peak_70218	chr3	123254505	123254641	+	10.18236	NA	intron (NM_198402, intron 3 of 6)	intron (NM_198402, intron 3 of 6)	49351	NM_198402	201562	Hs.705480	NM_198402		PTPLB	HACD2	protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	protein-coding
19-PTNLD28-TUMOR_peak_82903	chr5	143009547	143009655	+	10.18236	NA	Intergenic	Intergenic	-49824	NR_049829	100846991		NR_049829	miRBase:MI0018176	MIR5197	-	microRNA 5197	ncRNA
19-PTNLD28-TUMOR_peak_26038	chr12	106690183	106690307	+	10.18236	NA	Intergenic	Intergenic	-6324	NM_001286262	255394	Hs.696047	NM_152772	HPRD:17555	TCP11L2	-	t-complex 11, testis-specific-like 2	protein-coding
19-PTNLD28-TUMOR_peak_52201	chr2	38392142	38392236	+	10.18236	NA	intron (NR_027252, intron 2 of 2)	L2c|LINE|L2	33942	NR_027252	285154	Hs.353894	NM_173652	HPRD:14592	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22572	chr12	3929428	3929533	+	10.18236	NA	intron (NR_104461, intron 6 of 8)	intron (NR_104461, intron 6 of 8)	53134	NM_020367	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_75741	chr4	77101133	77101294	+	10.18236	NA	intron (NM_005506, intron 3 of 11)	intron (NM_005506, intron 3 of 11)	-31545	NM_017426	53371	Hs.430435	NM_017426	HPRD:06352	NUP54	-	nucleoporin 54kDa	protein-coding
19-PTNLD28-TUMOR_peak_17395	chr11	15612847	15613083	+	10.18236	NA	Intergenic	Intergenic	-52466	NM_001293172	102724957	Hs.512245	NM_001293172		LOC102724957	-	uncharacterized LOC102724957	protein-coding
19-PTNLD28-TUMOR_peak_15656	chr10	113358322	113358451	+	10.18236	NA	Intergenic	Intergenic	521596	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_108823	chrX	77769530	77769683	+	10.18236	NA	Intergenic	LTR2B|LTR|ERV1	145219	NM_152694	203430	Hs.134873	NM_152694	HPRD:06756	ZCCHC5	Mar3|Mart3|ZHC5	zinc finger, CCHC domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_104055	chr9	82054320	82054440	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-132308	NM_001282753	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4	transducin-like enhancer of split 4	protein-coding
19-PTNLD28-TUMOR_peak_12558	chr10	27208170	27208293	+	10.18236	NA	Intergenic	Intergenic	22699	NR_026795	387644	Hs.529965	NR_026795	ENSG00000232224	LINC00202-1	C10orf51|LINC00202|NCRNA00202|bB27G4.1	long intergenic non-protein coding RNA 202-1	ncRNA
19-PTNLD28-TUMOR_peak_81659	chr5	114843588	114843680	+	10.18236	NA	Intergenic	Intergenic	36957	NM_020177	56929	Hs.47367	NM_020177	HPRD:16384	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog c (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_24275	chr12	52269159	52269267	+	10.18236	NA	Intergenic	Intergenic	-12580	NM_001130015	341405	Hs.433492	NM_182608	HPRD:12465	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
19-PTNLD28-TUMOR_peak_19905	chr11	72843577	72843689	+	10.18236	NA	intron (NM_014824, intron 2 of 19)	AluJb|SINE|Alu	9510	NM_014824	9873	Hs.744959	NM_014824	HPRD:13321	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding
19-PTNLD28-TUMOR_peak_67405	chr3	32268496	32268627	+	10.18236	NA	Intergenic	Intergenic	-11610	NM_178868	152189	Hs.154986	NM_178868	HPRD:06989	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF-like MARVEL transmembrane domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_67727	chr3	42581451	42581637	+	10.18236	NA	Intergenic	Intergenic	-7446	NR_046654	100874007	Hs.600642	NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88235	chr6	71085019	71085145	+	10.18236	NA	Intergenic	Intergenic	-38025	NM_020819	57579	Hs.211700	NM_020819	HPRD:11144	FAM135A	KIAA1411	family with sequence similarity 135, member A	protein-coding
19-PTNLD28-TUMOR_peak_5115	chr1	98729705	98730006	+	10.18236	NA	intron (NR_046088, intron 2 of 2)	AluSp|SINE|Alu	53588	NR_046088	729987	Hs.683961	NR_046088	ENSG00000226053	LOC729987	-	uncharacterized LOC729987	ncRNA
19-PTNLD28-TUMOR_peak_29993	chr14	39336894	39336998	+	10.18236	NA	intron (NR_039982, intron 2 of 4)	intron (NR_039982, intron 2 of 4)	49140	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
19-PTNLD28-TUMOR_peak_98745	chr8	53408761	53408881	+	10.18236	NA	Intergenic	Intergenic	69200	NM_207413	389658	Hs.527111	NM_207413	HPRD:15623	FAM150A	UNQ9433	family with sequence similarity 150, member A	protein-coding
19-PTNLD28-TUMOR_peak_91506	chr7	20707785	20707893	+	10.18236	NA	TTS (NM_001163993)	TTS (NM_001163993)	20873	NM_001163993	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
19-PTNLD28-TUMOR_peak_15162	chr10	100013473	100013631	+	10.18236	NA	exon (NM_032211, exon 11 of 15)	exon (NM_032211, exon 11 of 15)	14455	NM_032211	84171	Hs.306814	NM_032211	HPRD:09538	LOXL4	LOXC	lysyl oxidase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_32987	chr15	33799092	33799280	+	10.18236	NA	intron (NM_001243996, intron 3 of 102)	intron (NM_001243996, intron 3 of 102)	196009	NM_001243996	6263	Hs.709373	NM_001036	HPRD:01620	RYR3	RYR-3	ryanodine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_59745	chr20	9233822	9233958	+	10.18236	NA	intron (NM_001172646, intron 2 of 37)	intron (NM_001172646, intron 2 of 37)	35853	NM_182797	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_92667	chr7	55729048	55729161	+	10.18236	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	26621	NR_027340	360132	Hs.446691	NM_182827	HPRD:16900	FKBP9P1	FKBP9L	FK506 binding protein 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_12723	chr10	30530128	30530284	+	10.18236	NA	Intergenic	Intergenic	29425	NR_120653	101929279	Hs.559153	NR_120653		LOC101929279	-	uncharacterized LOC101929279	ncRNA
19-PTNLD28-TUMOR_peak_15523	chr10	107310401	107310556	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	269613	NR_120625	101927549	Hs.556885	NR_120625	ENSG00000229466	LOC101927549	-	uncharacterized LOC101927549	ncRNA
19-PTNLD28-TUMOR_peak_72563	chr3	178733362	178733566	+	10.18236	NA	Intergenic	Intergenic	56192	NM_152240	64393	Hs.371609	NM_022470	HPRD:07343	ZMAT3	PAG608|WIG-1|WIG1	zinc finger, matrin-type 3	protein-coding
19-PTNLD28-TUMOR_peak_20922	chr11	104788848	104789167	+	10.18236	NA	promoter-TSS (NR_034079)	promoter-TSS (NR_034079)	-105	NR_034078	643733	Hs.713751	NR_034078	ENSG00000235505	LOC643733	-	caspase 4, apoptosis-related cysteine peptidase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_4558	chr1	84738192	84738338	+	10.18236	NA	Intergenic	Intergenic	-25784	NM_001010971	148418	Hs.591445	NM_001010971	HPRD:17302	SAMD13	-	sterile alpha motif domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_80127	chr5	59646756	59646944	+	10.18236	NA	intron (NM_001165899, intron 1 of 16)	intron (NM_001165899, intron 1 of 16)	-136690	NR_024617	25859	Hs.146312	NM_001039499	HPRD:09230	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_56424	chr2	156751652	156751835	+	10.18236	NA	Intergenic	Intergenic	359700	NR_110249	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_13317	chr10	45921699	45921873	+	10.18236	NA	intron (NM_001256153, intron 6 of 13)	intron (NM_001256153, intron 6 of 13)	26783	NR_120674	102724323	Hs.559151	NR_120674		LOC102724323	-	uncharacterized LOC102724323	ncRNA
19-PTNLD28-TUMOR_peak_19396	chr11	66197584	66197700	+	10.18236	NA	Intergenic	Intergenic	8677	NR_120589	65003	Hs.418450	NM_016050	HPRD:14739	MRPL11	L11MT|MRP-L11	mitochondrial ribosomal protein L11	protein-coding
19-PTNLD28-TUMOR_peak_44586	chr18	11488199	11488422	+	10.18236	NA	promoter-TSS (NR_110779)	promoter-TSS (NR_110779)	-259	NR_110779	101927433	Hs.331210	NR_110778	ENSG00000267252	LINC01255	-	long intergenic non-protein coding RNA 1255	ncRNA
19-PTNLD28-TUMOR_peak_46131	chr18	61555836	61556045	+	10.18236	NA	intron (NM_002575, intron 1 of 7)	intron (NM_002575, intron 1 of 7)	1001	NM_001143818	5055	Hs.594481	NM_002575	HPRD:01420	SERPINB2	HsT1201|PAI|PAI-2|PAI2|PLANH2	serpin peptidase inhibitor, clade B (ovalbumin), member 2	protein-coding
19-PTNLD28-TUMOR_peak_98331	chr8	39898547	39898677	+	10.18236	NA	Intergenic	Intergenic	106138	NM_194294	169355	Hs.676257	NM_194294	HPRD:14113	IDO2	INDOL1	indoleamine 2,3-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_36535	chr16	16139293	16139466	+	10.18236	NA	intron (NM_004996, intron 8 of 30)	intron (NM_004996, intron 8 of 30)	95945	NM_004996	4363	Hs.391464	NM_004996	HPRD:01153	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding
19-PTNLD28-TUMOR_peak_87849	chr6	47129060	47129202	+	10.18236	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-119049	NM_153840	266977	Hs.733762	NM_025048	HPRD:08661	GPR110	KPG_012|PGR19|hGPCR36	G protein-coupled receptor 110	protein-coding
19-PTNLD28-TUMOR_peak_32414	chr14	106993633	106993793	+	10.18236	NA	Intergenic	Intergenic	55268	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_45018	chr18	24525366	24525551	+	10.18236	NA	intron (NM_031422, intron 4 of 5)	L1MD1|LINE|L1	-79742	NM_001650	361	Hs.315369	NM_001650	HPRD:02631	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
19-PTNLD28-TUMOR_peak_78093	chr4	175350902	175351151	+	10.18236	NA	Intergenic	Intergenic	6080	NR_036236	100423042		NR_036236	miRBase:MI0015882	MIR4276	-	microRNA 4276	ncRNA
19-PTNLD28-TUMOR_peak_85692	chr6	17086741	17086856	+	10.18236	NA	Intergenic	Intergenic	-15691	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_44682	chr18	12904043	12904259	+	10.18236	NA	Intergenic	MER41B|LTR|ERV1	-19817	NM_002828	5771	Hs.654527	NM_002828	HPRD:06768	PTPN2	PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
19-PTNLD28-TUMOR_peak_105505	chr9	115940463	115940714	+	10.18236	NA	intron (NM_015258, intron 20 of 27)	intron (NM_015258, intron 20 of 27)	27350	NM_001860	1318	Hs.24030	NM_001860	HPRD:04365	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 (copper transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_4019	chr1	63244035	63244152	+	10.18236	NA	Intergenic	MER39|LTR|ERV1	-5684	NM_178221	84938	Hs.7353	NM_032852	HPRD:07473	ATG4C	APG4-C|APG4C|AUTL1|AUTL3	autophagy related 4C, cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_65469	chr22	38395915	38396165	+	10.18236	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	11239	NR_039759	100616146		NR_039759	miRBase:MI0016901	MIR4534	-	microRNA 4534	ncRNA
19-PTNLD28-TUMOR_peak_31935	chr14	97786074	97786302	+	10.18236	NA	Intergenic	AluJb|SINE|Alu	-138965	NR_110165	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_80868	chr5	78260869	78260967	+	10.18236	NA	intron (NM_198709, intron 3 of 7)	intron (NM_198709, intron 3 of 7)	20848	NM_198709	411	Hs.149103	NM_000046	HPRD:08358	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
19-PTNLD28-TUMOR_peak_3858	chr1	59820541	59820717	+	10.18236	NA	intron (NM_001113411, intron 4 of 16)	L2a|LINE|L2	44879	NM_001244714	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_100915	chr8	130176604	130176976	+	10.18236	NA	Intergenic	Intergenic	76696	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_11985	chr10	10965102	10965251	+	10.18236	NA	Intergenic	Intergenic	28950	NR_024410	254312	Hs.498620	NR_015413		LINC00710	-	long intergenic non-protein coding RNA 710	ncRNA
19-PTNLD28-TUMOR_peak_72100	chr3	160638960	160639095	+	10.18236	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	165031	NM_139245	151742	Hs.389027	NM_139245		PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent, 1L	protein-coding
19-PTNLD28-TUMOR_peak_22624	chr12	5009627	5009767	+	10.18236	NA	Intergenic	Intergenic	-9376	NM_000217	3736	Hs.416139	NM_000217	HPRD:08885	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	protein-coding
19-PTNLD28-TUMOR_peak_109428	chrX	129158231	129158378	+	10.18236	NA	intron (NM_021946, intron 5 of 11)	intron (NM_021946, intron 5 of 11)	19140	NM_021946	63035	Hs.496748	NM_021946	HPRD:06517	BCORL1	BCoR-L1|CXorf10	BCL6 corepressor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_35002	chr15	85498700	85498823	+	10.18236	NA	Intergenic	Intergenic	-24983	NM_001243137	5151	Hs.9333	NM_002605	HPRD:09114	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
19-PTNLD28-TUMOR_peak_97795	chr8	26575063	26575320	+	10.18236	NA	Intergenic	Intergenic	139270	NM_001244604	1808	Hs.593187	NM_001386	HPRD:03914	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_55939	chr2	136721498	136721662	+	10.18236	NA	intron (NM_001293312, intron 2 of 14)	intron (NM_001293312, intron 2 of 14)	-21166	NR_110200	101928243	Hs.602178	NR_110199		DARS-AS1	-	DARS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22885	chr12	7984821	7984996	+	10.18236	NA	intron (NM_001286233, intron 8 of 15)	intron (NM_001286233, intron 8 of 15)	40727	NM_153449	144195	Hs.655169	NM_153449	HPRD:11573	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 (facilitated glucose transporter), member 14	protein-coding
19-PTNLD28-TUMOR_peak_59900	chr20	14900504	14900703	+	10.18236	NA	intron (NR_072988, intron 1 of 1)	intron (NR_072988, intron 1 of 1)	9561	NR_110318	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	BA318C17.1|NCRNA00186	MACROD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87912	chr6	51089625	51089719	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	303233	NM_003221	7021	Hs.33102	NM_003221	HPRD:03360	TFAP2B	AP-2B|AP2-B	transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	protein-coding
19-PTNLD28-TUMOR_peak_102646	chr9	32589229	32589334	+	10.18236	NA	Intergenic	Intergenic	-16099	NM_182739	4712	Hs.493668	NM_002493	HPRD:04504	NDUFB6	B17|CI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa	protein-coding
19-PTNLD28-TUMOR_peak_80229	chr5	62694304	62694417	+	10.18236	NA	Intergenic	MER54A|LTR|ERVL	563759	NM_000524	3350	Hs.247940	NM_000524		HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_38494	chr16	69547553	69547704	+	10.18236	NA	Intergenic	Intergenic	52143	NR_031719	100302119		NR_031719	miRBase:MI0007259	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
19-PTNLD28-TUMOR_peak_25845	chr12	102737494	102737661	+	10.18236	NA	Intergenic	Intergenic	134852	NM_001111284	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_105049	chr9	104227748	104227892	+	10.18236	NA	Intergenic	Intergenic	-2901	NR_121576	101928470	Hs.656088	NR_121573	ENSG00000225376	TMEM246-AS1	-	TMEM246 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107979	chrX	39834802	39835172	+	10.18236	NA	Intergenic	Intergenic	121732	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_15138	chr10	99548520	99548708	+	10.18236	NA	Intergenic	Intergenic	-16858	NM_003015	6425	Hs.279565	NM_003015	HPRD:09166	SFRP5	SARP3	secreted frizzled-related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_77243	chr4	140990391	140990484	+	10.18236	NA	intron (NM_018717, intron 1 of 5)	AluSz6|SINE|Alu	84796	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_45534	chr18	44781069	44781224	+	10.18236	NA	Intergenic	Intergenic	-5592	NM_001278063	652991	Hs.585834	NM_001037802	ENSG00000215474	SKOR2	CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_40109	chr17	8392377	8392567	+	10.18236	NA	intron (NM_005964, intron 33 of 40)	MLT1F1|LTR|ERVL-MaLR	53302	NM_030808	81565	Hs.372123	NM_030808	HPRD:06340	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_37605	chr16	46607604	46607740	+	10.18236	NA	Intergenic	Intergenic	-4663	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_108942	chrX	96872243	96872401	+	10.18236	NA	Intergenic	Intergenic	-52788	NR_125391	10824	Hs.654372	NR_125391		DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_67313	chr3	29281843	29281942	+	10.18236	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	40538	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_109182	chrX	110343538	110343654	+	10.18236	NA	intron (NM_002578, intron 3 of 17)	intron (NM_002578, intron 3 of 17)	4221	NM_002578	5063	Hs.593599	NM_002578	HPRD:02142	PAK3	CDKN1A|MRX30|MRX47|OPHN3|PAK3beta|bPAK|hPAK3	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_91344	chr7	15726366	15726617	+	10.18236	NA	promoter-TSS (NM_005924)	promoter-TSS (NM_005924)	-183	NM_005924	4223	Hs.170355	NM_005924	HPRD:02760	MEOX2	GAX|MOX2	mesenchyme homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_79506	chr5	36483051	36483175	+	10.18236	NA	Intergenic	Intergenic	-123344	NM_001166696	6507	Hs.481918	NM_004172	HPRD:02523	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_83598	chr5	159448956	159449070	+	10.18236	NA	intron (NM_003314, intron 2 of 7)	intron (NM_003314, intron 2 of 7)	12906	NM_003314	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_3458	chr1	51536325	51536460	+	10.18236	NA	Intergenic	Intergenic	-31514	NM_001136508	284546	Hs.176177	NM_001136508	ENSG00000204006	C1orf185	-	chromosome 1 open reading frame 185	protein-coding
19-PTNLD28-TUMOR_peak_77857	chr4	159904086	159904189	+	10.18236	NA	intron (NM_152543, intron 1 of 4)	L1PA3|LINE|L1	52196	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_46936	chr19	6783840	6784011	+	10.18236	NA	intron (NM_001258207, intron 1 of 25)	intron (NM_001258207, intron 1 of 25)	11246	NM_005428	7409	Hs.116237	NM_005428	HPRD:01284	VAV1	VAV	vav 1 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_58560	chr2	222294569	222294704	+	10.18236	NA	intron (NM_004438, intron 15 of 17)	intron (NM_004438, intron 15 of 17)	142374	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_52696	chr2	48625156	48625260	+	10.18236	NA	Intergenic	Intergenic	-42700	NM_001135629	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_102408	chr9	20103194	20103300	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	307989	NR_039684	100616229		NR_039684		MIR4473	-	microRNA 4473	ncRNA
19-PTNLD28-TUMOR_peak_89183	chr6	114200792	114200915	+	10.18236	NA	Intergenic	Intergenic	-6341	NR_038863	285758	Hs.359399	NR_038863	ENSG00000227502	LINC01268	-	long intergenic non-protein coding RNA 1268	ncRNA
19-PTNLD28-TUMOR_peak_10212	chr1	222053680	222053776	+	10.18236	NA	Intergenic	Intergenic	-138210	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_67324	chr3	29789498	29789812	+	10.18236	NA	intron (NM_001003792, intron 5 of 13)	L2a|LINE|L2	185992	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28941	chr13	106224863	106225023	+	10.18236	NA	Intergenic	Intergenic	-66913	NR_040247	282706	Hs.558713	NR_040247	HPRD:07597	DAOA-AS1	DAOA-AS|DAOAAS|G30	DAOA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30020	chr14	40592324	40592456	+	10.18236	NA	Intergenic	Intergenic	-690686	NM_203301	254170	Hs.146632	NM_203301		FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
19-PTNLD28-TUMOR_peak_102153	chr9	8438010	8438155	+	10.18236	NA	intron (NM_001171025, intron 16 of 28)	intron (NM_001171025, intron 16 of 28)	295864	NM_130393	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_44254	chr18	2036149	2036452	+	10.18236	NA	Intergenic	Intergenic	535189	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_41000	chr17	31365891	31365988	+	10.18236	NA	intron (NM_183377, intron 3 of 9)	intron (NM_183377, intron 3 of 9)	47057	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_27226	chr12	131875101	131875207	+	10.18236	NA	Intergenic	Intergenic	43139	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_77961	chr4	168270159	168270257	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-114467	NM_001204355	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_64662	chr22	23470666	23470855	+	10.18236	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	13481	NM_014433	27156	Hs.526920	NM_014433	HPRD:16136	RTDR1	-	rhabdoid tumor deletion region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_4192	chr1	67669293	67669488	+	10.18236	NA	intron (NM_144701, intron 5 of 10)	intron (NM_144701, intron 5 of 10)	37221	NM_144701	149233	Hs.677426	NM_144701	HPRD:16249	IL23R	-	interleukin 23 receptor	protein-coding
19-PTNLD28-TUMOR_peak_43063	chr17	65484397	65484509	+	10.18236	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	111056	NM_012417	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_1031	chr1	16251381	16251479	+	10.18236	NA	intron (NM_015001, intron 10 of 14)	intron (NM_015001, intron 10 of 14)	51197	NM_001287603	7709	Hs.433764	NM_003443	HPRD:04968	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_51173	chr2	11963033	11963313	+	10.18236	NA	intron (NM_001261428, intron 21 of 21)	intron (NM_001261428, intron 21 of 21)	13939	NR_036226	100422996		NR_036226	miRBase:MI0015872	MIR4262	-	microRNA 4262	ncRNA
19-PTNLD28-TUMOR_peak_16271	chr10	131244222	131244347	+	10.18236	NA	Intergenic	Intergenic	-21170	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_79245	chr5	24060754	24060869	+	10.18236	NA	Intergenic	Intergenic	553087	NM_020227	56979	Hs.283096	NM_020227	HPRD:17905	PRDM9	MEISETZ|MSBP3|PFM6|PRMD9|ZNF899	PR domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_44611	chr18	11887819	11887942	+	10.18236	NA	intron (NR_040243, intron 6 of 11)	intron (NR_040243, intron 6 of 11)	20916	NM_001242904	65258	Hs.712666	NM_023075	HPRD:14734	MPPE1	PGAP5	metallophosphoesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_100504	chr8	124077939	124078059	+	10.18236	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-6921	NM_145647	93594	Hs.492716	NM_145647	HPRD:11319	TBC1D31	Gm85|WDR67	TBC1 domain family, member 31	protein-coding
19-PTNLD28-TUMOR_peak_73020	chr3	187397530	187397651	+	10.18236	NA	Intergenic	Intergenic	-9389	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_104098	chr9	84144863	84145024	+	10.18236	NA	Intergenic	Intergenic	158653	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_109611	chrX	137794307	137794412	+	10.18236	NA	promoter-TSS (NR_038405)	promoter-TSS (NR_038405)	90	NR_038405	100129662	Hs.571747	NR_038405	ENSG00000226031	FGF13-AS1	-	FGF13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27207	chr12	131601539	131601675	+	10.18236	NA	intron (NM_198827, intron 18 of 24)	MER103C|DNA|hAT-Charlie	-47949	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_59898	chr20	14826370	14826471	+	10.18236	NA	intron (NM_080676, intron 5 of 16)	intron (NM_080676, intron 5 of 16)	83744	NR_110318	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	BA318C17.1|NCRNA00186	MACROD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109312	chrX	119014885	119015048	+	10.18236	NA	Intergenic	MER20|DNA|hAT-Charlie	-9175	NM_006978	7737	Hs.458365	NM_006978	HPRD:06760	RNF113A	Cwc24|RNF113|ZNF183	ring finger protein 113A	protein-coding
19-PTNLD28-TUMOR_peak_31932	chr14	97741800	97741914	+	10.18236	NA	Intergenic	Intergenic	-183296	NR_110165	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_32089	chr14	101317608	101317769	+	10.18236	NA	non-coding (NR_046473, exon 7 of 7)	non-coding (NR_046473, exon 7 of 7)	-1039	NR_030528	768222		NR_030528	miRBase:MI0005118	MIR770	MIRN770|hsa-mir-770	microRNA 770	ncRNA
19-PTNLD28-TUMOR_peak_33904	chr15	63287352	63287457	+	10.18236	NA	Intergenic	Intergenic	-47434	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_36491	chr16	15521573	15521826	+	10.18236	NA	Intergenic	Intergenic	-6626	NM_033201	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_35221	chr15	91103660	91103976	+	10.18236	NA	intron (NM_001042574, intron 2 of 14)	Charlie13a|DNA|hAT-Charlie	30700	NM_022769	64784	Hs.567572	NM_022769	HPRD:13384	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_72130	chr3	161218310	161218528	+	10.18236	NA	intron (NM_001080440, intron 2 of 3)	intron (NM_001080440, intron 2 of 3)	3823	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
19-PTNLD28-TUMOR_peak_97025	chr8	8116151	8116324	+	10.18236	NA	Intergenic	AluSz|SINE|Alu	30145	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103724	chr9	72534536	72534642	+	10.18236	NA	Intergenic	Intergenic	98858	NM_001010940	138255	Hs.444459	NM_001010940	HPRD:17298	C9orf135	-	chromosome 9 open reading frame 135	protein-coding
19-PTNLD28-TUMOR_peak_65946	chr22	46292501	46292648	+	10.18236	NA	Intergenic	Intergenic	80434	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_85722	chr6	17876363	17876493	+	10.18236	NA	intron (NM_001105568, intron 3 of 37)	intron (NM_001105568, intron 3 of 37)	111426	NM_001105568	63971	Hs.94499	NM_022113	HPRD:09256	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
19-PTNLD28-TUMOR_peak_81074	chr5	88507793	88507920	+	10.18236	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-307934	NM_001193347	4208	Hs.649965	NM_002397	HPRD:02809	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
19-PTNLD28-TUMOR_peak_56068	chr2	140295971	140296171	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	641177	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_19997	chr11	74077633	74077831	+	10.18236	NA	intron (NM_173582, intron 5 of 13)	L2a|LINE|L2	31770	NM_173582	283209	Hs.26612	NM_173582	HPRD:11427	PGM2L1	BM32A	phosphoglucomutase 2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_46109	chr18	61003757	61003916	+	10.18236	NA	intron (NM_002035, intron 8 of 9)	Charlie1a|DNA|hAT-Charlie	-17223	NM_000657	596	Hs.150749	NM_000633	HPRD:01045	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
19-PTNLD28-TUMOR_peak_89303	chr6	121870934	121871161	+	10.18236	NA	Intergenic	Intergenic	114324	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_21454	chr11	117632744	117633096	+	10.18236	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	35056	NM_020693	57453	Hs.659513	NM_020693	HPRD:10921	DSCAML1	-	Down syndrome cell adhesion molecule like 1	protein-coding
19-PTNLD28-TUMOR_peak_109208	chrX	112205258	112205482	+	10.18236	NA	Intergenic	L2c|LINE|L2	-80585	NR_110399	101928437	Hs.640112	NR_110399		LOC101928437	-	uncharacterized LOC101928437	ncRNA
19-PTNLD28-TUMOR_peak_79301	chr5	31274493	31274605	+	10.18236	NA	intron (NM_004932, intron 2 of 11)	intron (NM_004932, intron 2 of 11)	80787	NM_004932	1004	Hs.124776	NM_004932	HPRD:04305	CDH6	CAD6|KCAD	cadherin 6, type 2, K-cadherin (fetal kidney)	protein-coding
19-PTNLD28-TUMOR_peak_15866	chr10	119256177	119256315	+	10.18236	NA	intron (NR_002791, intron 2 of 3)	intron (NR_002791, intron 2 of 3)	-45710	NM_001165924	2018	Hs.202095	NM_004098	HPRD:02495	EMX2	-	empty spiracles homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_38213	chr16	66349086	66349394	+	10.18236	NA	Intergenic	Intergenic	-51285	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_56730	chr2	164716557	164716712	+	10.18236	NA	Intergenic	Intergenic	-124121	NM_018086	55137	Hs.593650	NM_018086		FIGN	-	fidgetin	protein-coding
19-PTNLD28-TUMOR_peak_93732	chr7	83720808	83720906	+	10.18236	NA	intron (NM_006080, intron 4 of 16)	intron (NM_006080, intron 4 of 16)	103360	NM_006080	10371	Hs.252451	NM_006080		SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
19-PTNLD28-TUMOR_peak_15024	chr10	97312547	97312713	+	10.18236	NA	intron (NM_001290294, intron 1 of 31)	HAL1|LINE|L1	8547	NM_015385	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_68473	chr3	55396375	55396531	+	10.18236	NA	Intergenic	Intergenic	118973	NM_001256105	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_58720	chr2	228624581	228624766	+	10.18236	NA	Intergenic	Intergenic	-41928	NM_025243	80704	Hs.221597	NM_025243	HPRD:07311	SLC19A3	BBGD|THMD2|THTR2	solute carrier family 19 (thiamine transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_32421	chr14	107198788	107198911	+	10.18236	NA	Intergenic	Intergenic	260404	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_67029	chr3	18345252	18345353	+	10.18236	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	121527	NM_002971	6304	Hs.517717	NM_002971	HPRD:03647	SATB1	-	SATB homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_39943	chr17	6955459	6955646	+	10.18236	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-8310	NM_153357	162515	Hs.336564	NM_153357	HPRD:11567	SLC16A11	MCT11	solute carrier family 16, member 11	protein-coding
19-PTNLD28-TUMOR_peak_22990	chr12	9864399	9864535	+	10.18236	NA	Intergenic	L2|LINE|L2	21428	NM_172004	160365	Hs.560087	NM_172004	HPRD:16247	CLECL1	DCAL-1|DCAL1	C-type lectin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91923	chr7	32944846	32944991	+	10.18236	NA	Intergenic	MER66B|LTR|ERV1	-13450	NM_015483	25948	Hs.372541	NM_015483	HPRD:13756	KBTBD2	BKLHD1	kelch repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_76961	chr4	125052524	125052646	+	10.18236	NA	Intergenic	L1PA4|LINE|L1	357166	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_98711	chr8	51595891	51596000	+	10.18236	NA	intron (NM_001287813, intron 16 of 19)	intron (NM_001287813, intron 16 of 19)	771606	NM_018967	54212	Hs.584914	NM_018967	HPRD:16373	SNTG1	G1SYN|SYN4	syntrophin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_57201	chr2	178764918	178765073	+	10.18236	NA	intron (NM_001077197, intron 4 of 20)	intron (NM_001077197, intron 4 of 20)	-11529	NM_001077196	50940	Hs.570273	NM_016953	HPRD:05391	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
19-PTNLD28-TUMOR_peak_92708	chr7	56396139	56396268	+	10.18236	NA	Intergenic	L2|LINE|L2	119865	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_13155	chr10	42931290	42931414	+	10.18236	NA	intron (NR_103829, intron 3 of 8)	L1PA2|LINE|L1	36336	NR_103829	414194	Hs.568048	NR_103829	ENSG00000182632	CCNYL2	C10orf21|bA178A10.2	cyclin Y-like 2	pseudo
19-PTNLD28-TUMOR_peak_91807	chr7	29636429	29636666	+	10.18236	NA	Intergenic	Intergenic	33120	NM_175887	222171	Hs.91109	NM_175887	HPRD:14136	PRR15	-	proline rich 15	protein-coding
19-PTNLD28-TUMOR_peak_9017	chr1	194627375	194627473	+	10.18236	NA	Intergenic	Intergenic	1353549	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_8849	chr1	185113394	185113638	+	10.18236	NA	intron (NM_030934, intron 5 of 14)	intron (NM_030934, intron 5 of 14)	12600	NM_030934	81627	Hs.107149	NM_030934	HPRD:12722	TRMT1L	C1orf25|MST070|TRM1L|bG120K12.3	tRNA methyltransferase 1 homolog (S. cerevisiae)-like	protein-coding
19-PTNLD28-TUMOR_peak_25336	chr12	74437211	74437454	+	10.18236	NA	Intergenic	Intergenic	249079	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	LOC100507377	-	uncharacterized LOC100507377	ncRNA
19-PTNLD28-TUMOR_peak_69691	chr3	110608165	110608405	+	10.18236	NA	Intergenic	L1HS|LINE|L1	180521	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44759	chr18	15267061	15267195	+	10.18236	NA	Intergenic	L1MB2|LINE|L1	58790	NR_027417	644669	Hs.579474	NR_027417	ENSG00000215512	LOC644669	-	ankyrin repeat domain 30B pseudogene	pseudo
19-PTNLD28-TUMOR_peak_73120	chr3	189052383	189052658	+	10.18236	NA	Intergenic	Intergenic	-94137	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_22271	chr11	133491696	133491792	+	10.18236	NA	Intergenic	Intergenic	-89341	NM_001012393	4978	Hs.4817	NM_002545	HPRD:07198	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
19-PTNLD28-TUMOR_peak_5122	chr1	99259901	99260078	+	10.18236	NA	Intergenic	Intergenic	132753	NM_152238	51375	Hs.197015	NM_015976	HPRD:15416	SNX7	-	sorting nexin 7	protein-coding
19-PTNLD28-TUMOR_peak_69971	chr3	116078873	116079084	+	10.18236	NA	intron (NR_109998, intron 1 of 3)	L1HS|LINE|L1	107	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	uncharacterized LOC101926903	ncRNA
19-PTNLD28-TUMOR_peak_29963	chr14	37550539	37550701	+	10.18236	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	-90611	NR_033240	100129794	Hs.601579	NR_033240	ENSG00000258708	SLC25A21-AS1	-	SLC25A21 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95474	chr7	133826159	133826254	+	10.18236	NA	intron (NM_144648, intron 3 of 19)	intron (NM_144648, intron 3 of 19)	14101	NM_144648	136332	Hs.149774	NM_144648	HPRD:08734	LRGUK	-	leucine-rich repeats and guanylate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_56634	chr2	161485452	161485611	+	10.18236	NA	Intergenic	Intergenic	-135213	NM_002897	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25544	chr12	90089007	90089131	+	10.18236	NA	Intergenic	Intergenic	-13663	NR_028138	338758	Hs.601766	NR_028138	ENSG00000271614	LINC00936	-	long intergenic non-protein coding RNA 936	ncRNA
19-PTNLD28-TUMOR_peak_11465	chr1	245785055	245785228	+	10.18236	NA	intron (NM_018012, intron 9 of 14)	intron (NM_018012, intron 9 of 14)	466854	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_91274	chr7	10627798	10627986	+	10.18236	NA	Intergenic	Intergenic	351921	NM_002489	4697	Hs.50098	NM_002489	HPRD:04831	NDUFA4	CI-9k|CI-MLRQ|MLRQ	NDUFA4, mitochondrial complex associated	protein-coding
19-PTNLD28-TUMOR_peak_108805	chrX	76230247	76230413	+	10.18236	NA	intron (NR_110402, intron 1 of 3)	intron (NR_110402, intron 1 of 3)	4627	NR_110402	101928469	Hs.640805	NR_110400		MIR325HG	MIR384HG	MIR325 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77781	chr4	157268574	157268875	+	10.18236	NA	Intergenic	L1M4b|LINE|L1	-393676	NM_001334	1519	Hs.75262	NM_001334	HPRD:02772	CTSO	CTSO1	cathepsin O	protein-coding
19-PTNLD28-TUMOR_peak_71412	chr3	142582429	142582573	+	10.18236	NA	intron (NM_013363, intron 2 of 8)	intron (NM_013363, intron 2 of 8)	25544	NM_013363	26577	Hs.8944	NM_013363	HPRD:06139	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
19-PTNLD28-TUMOR_peak_58194	chr2	212687837	212687973	+	10.18236	NA	intron (NM_005235, intron 3 of 27)	MLT1H|LTR|ERVL-MaLR	603179	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
19-PTNLD28-TUMOR_peak_50753	chr2	714377	714536	+	10.18236	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-37017	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_95549	chr7	135070067	135070255	+	10.18236	NA	intron (NM_001190849, intron 10 of 11)	intron (NM_001190849, intron 10 of 11)	124714	NM_001190850	4850	Hs.490224	NM_013316	HPRD:05369	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex, subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_69634	chr3	108159908	108160041	+	10.18236	NA	exon (NM_014981, exon 24 of 42)	exon (NM_014981, exon 24 of 42)	88195	NM_014981	22989	Hs.731060	NM_014981	ENSG00000144821	MYH15	-	myosin, heavy chain 15	protein-coding
19-PTNLD28-TUMOR_peak_110061	chrX	155192667	155192949	+	10.18236	NA	Intergenic	MER21C|LTR|ERVL	-34438	NM_002186	3581	Hs.406228	NM_002186	HPRD:02052	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
19-PTNLD28-TUMOR_peak_20627	chr11	94182720	94182871	+	10.18236	NA	intron (NM_005590, intron 14 of 18)	Tigger3a|DNA|TcMar-Tigger	44245	NM_005591	4361	Hs.192649	NM_005590	HPRD:02889	MRE11A	ATLD|HNGS1|MRE11|MRE11B	MRE11 meiotic recombination 11 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_92363	chr7	45937064	45937178	+	10.18236	NA	Intergenic	MLT2D|LTR|ERVL	9162	NM_000596	3484	Hs.642938	NM_000596	HPRD:00897	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin-like growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_98877	chr8	57006299	57006456	+	10.18236	NA	Intergenic	Intergenic	-19237	NM_001023	6224	Hs.8102	NM_001023		RPS20	S20	ribosomal protein S20	protein-coding
19-PTNLD28-TUMOR_peak_78107	chr4	176118526	176118661	+	10.18236	NA	Intergenic	MER2|DNA|TcMar-Tigger	279084	NM_001278126	11086	Hs.126838	NM_014269	HPRD:05306	ADAM29	CT73|svph1	ADAM metallopeptidase domain 29	protein-coding
19-PTNLD28-TUMOR_peak_4305	chr1	70288392	70288500	+	10.18236	NA	intron (NM_020794, intron 2 of 24)	L1MA9|LINE|L1	62588	NM_020794	57554	Hs.479658	NM_020794	HPRD:09930	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
19-PTNLD28-TUMOR_peak_28591	chr13	80354056	80354187	+	10.18236	NA	Intergenic	Intergenic	-24400	NR_125785	102724076	Hs.208617	NR_125785		LINC01038	-	long intergenic non-protein coding RNA 1038	ncRNA
19-PTNLD28-TUMOR_peak_29302	chr14	20572309	20572402	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-13211	NM_001004715	390436	Hs.553765	NM_001004715	HPRD:14979	OR4K17	OR14-29	olfactory receptor, family 4, subfamily K, member 17	protein-coding
19-PTNLD28-TUMOR_peak_59646	chr20	4932010	4932235	+	10.18236	NA	intron (NM_005116, intron 2 of 16)	intron (NM_005116, intron 2 of 16)	50023	NM_005116	9962	Hs.516866	NM_005116	HPRD:04811	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_37619	chr16	46887993	46888116	+	10.18236	NA	Intergenic	Intergenic	-22980	NM_001001436	388272	Hs.406551	NM_001001436	HPRD:17370	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_25516	chr12	88860528	88860628	+	10.18236	NA	Intergenic	L1PA7|LINE|L1	113672	NM_003994	4254	Hs.1048	NM_000899		KITLG	FPH2|KL-1|Kitl|MGF|SCF|SF|SHEP7	KIT ligand	protein-coding
19-PTNLD28-TUMOR_peak_21331	chr11	115176371	115176604	+	10.18236	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	198754	NM_014333	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_102522	chr9	25076361	25076580	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-530796	NM_001271706	100129669	Hs.573530	NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
19-PTNLD28-TUMOR_peak_89347	chr6	125445456	125445697	+	10.18236	NA	Intergenic	L1PBa1|LINE|L1	-29299	NM_001300994	7164	Hs.591347	NM_003287	HPRD:07236	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1613	chr1	25935217	25935331	+	10.18236	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-8685	NM_001289010	57134	Hs.197043	NM_020379		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase, alpha, class 1C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_51582	chr2	25039954	25040065	+	10.18236	NA	intron (NM_001199803, intron 5 of 6)	intron (NM_001199803, intron 5 of 6)	23678	NM_024322	79172	Hs.731569	NM_024322	HPRD:14414	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
19-PTNLD28-TUMOR_peak_58107	chr2	208937085	208937284	+	10.18236	NA	Intergenic	Intergenic	-46669	NR_038437	100507443	Hs.570295	NR_038437		LOC100507443	-	uncharacterized LOC100507443	ncRNA
19-PTNLD28-TUMOR_peak_23922	chr12	46054272	46054370	+	10.18236	NA	Intergenic	LTR16B1|LTR|ERVL	67383	NR_028408	400027	Hs.597122	NR_028408	ENSG00000273015	LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
19-PTNLD28-TUMOR_peak_91818	chr7	29938050	29938221	+	10.18236	NA	intron (NM_001080529, intron 7 of 8)	L2a|LINE|L2	91290	NM_001145515	9805	Hs.520740	NM_014766	HPRD:15304	SCRN1	SES1	secernin 1	protein-coding
19-PTNLD28-TUMOR_peak_45872	chr18	54717872	54718102	+	10.18236	NA	Intergenic	Intergenic	21363	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
19-PTNLD28-TUMOR_peak_20722	chr11	95883347	95883487	+	10.18236	NA	intron (NM_032427, intron 1 of 4)	L2c|LINE|L2	-191185	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_8862	chr1	185335792	185335948	+	10.18236	NA	Intergenic	MER5A|DNA|hAT-Charlie	-31699	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule-associated protein 1 light chain 3 beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7865	chr1	164855506	164855709	+	10.18236	NA	Intergenic	L3|LINE|CR1	-111729	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
19-PTNLD28-TUMOR_peak_81480	chr5	108716504	108716633	+	10.18236	NA	intron (NM_014819, intron 3 of 9)	AluSz|SINE|Alu	29107	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_52198	chr2	38342526	38342626	+	10.18236	NA	Intergenic	Intergenic	-15671	NR_027252	285154	Hs.353894	NM_173652	HPRD:14592	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99806	chr8	102486474	102486712	+	10.18236	NA	Intergenic	Intergenic	-18075	NM_024915	79977	Hs.661088	NM_024915	HPRD:10545	GRHL2	BOM|DFNA28|TFCP2L3	grainyhead-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_56300	chr2	151458423	151458557	+	10.18236	NA	Intergenic	L5|LINE|RTE	-26921	NR_110246	101929282	Hs.126866	NR_110244		LOC101929282	-	uncharacterized LOC101929282	ncRNA
19-PTNLD28-TUMOR_peak_66907	chr3	15447089	15447181	+	10.18236	NA	Intergenic	Intergenic	21907	NM_152396	131965	Hs.149487	NM_152396	HPRD:14494	METTL6	-	methyltransferase like 6	protein-coding
19-PTNLD28-TUMOR_peak_91313	chr7	12687438	12687635	+	10.18236	NA	intron (NM_001112706, intron 13 of 15)	intron (NM_001112706, intron 13 of 15)	-38916	NM_001037164	10124	Hs.245540	NM_005738	HPRD:11987	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_36092	chr16	7075714	7075883	+	10.18236	NA	intron (NM_001142334, intron 1 of 13)	intron (NM_001142334, intron 1 of 13)	251988	NM_001142334	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_23780	chr12	39497495	39497596	+	10.18236	NA	Intergenic	Intergenic	-198125	NM_153634	144402	Hs.40910	NM_153634	HPRD:16747	CPNE8	-	copine VIII	protein-coding
19-PTNLD28-TUMOR_peak_105036	chr9	103810311	103810533	+	10.18236	NA	intron (NM_207299, intron 1 of 7)	intron (NM_207299, intron 1 of 7)	19391	NM_207299	54886	Hs.382683	NM_017753	HPRD:17906	LPPR1	PRG-3	lipid phosphate phosphatase-related protein type 1	protein-coding
19-PTNLD28-TUMOR_peak_70882	chr3	132450116	132450336	+	10.18236	NA	intron (NR_002811, intron 2 of 10)	intron (NR_002811, intron 2 of 10)	-8923	NR_037804	100532724	Hs.511991	NR_037804		NPHP3-ACAD11	-	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
19-PTNLD28-TUMOR_peak_76470	chr4	105972159	105972314	+	10.18236	NA	Intergenic	L1PA11|LINE|L1	-94796	NM_017628	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_72134	chr3	162013276	162013417	+	10.18236	NA	Intergenic	Intergenic	798750	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
19-PTNLD28-TUMOR_peak_38839	chr16	78145410	78145560	+	10.18236	NA	intron (NR_120436, intron 3 of 5)	LTR13A|LTR|ERVK	12175	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_81903	chr5	125474446	125474614	+	10.18236	NA	Intergenic	Intergenic	-40740	NR_105042	102546228	Hs.582529	NR_105042		LOC102546228	-	uncharacterized LOC102546228	ncRNA
19-PTNLD28-TUMOR_peak_64909	chr22	27744732	27744901	+	10.18236	NA	Intergenic	Intergenic	445561	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_105742	chr9	121081156	121081272	+	10.18236	NA	Intergenic	MIR|SINE|MIR	614761	NM_138554	7099	Hs.174312	NM_003266	HPRD:04325	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_20568	chr11	92233797	92233935	+	10.18236	NA	intron (NM_001008781, intron 1 of 24)	intron (NM_001008781, intron 1 of 24)	148604	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_51888	chr2	29419811	29419903	+	10.18236	NA	intron (NM_004304, intron 27 of 28)	intron (NM_004304, intron 27 of 28)	81565	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_31353	chr14	76097180	76097331	+	10.18236	NA	intron (NM_001195283, intron 3 of 9)	intron (NM_001195283, intron 3 of 9)	25450	NM_001195283	55640	Hs.509966	NM_017791	HPRD:12654	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	feline leukemia virus subgroup C cellular receptor family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_9940	chr1	211809958	211810074	+	10.18236	NA	Intergenic	Intergenic	38956	NM_002497	4751	Hs.153704	NM_002497	HPRD:04953	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA-related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_70835	chr3	131280368	131280518	+	10.18236	NA	intron (NM_001289112, intron 11 of 15)	intron (NM_001289112, intron 11 of 15)	-58583	NM_007208	11222	Hs.205163	NM_007208	HPRD:06175	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_109683	chrX	146735286	146735486	+	10.18236	NA	Intergenic	L1HS|LINE|L1	-258083	NM_001185082	2332	Hs.103183	NM_002024	HPRD:02398	FMR1	FMRP|FRAXA|POF|POF1	fragile X mental retardation 1	protein-coding
19-PTNLD28-TUMOR_peak_44386	chr18	6210912	6211042	+	10.18236	NA	intron (NM_173464, intron 12 of 19)	MIRb|SINE|MIR	-45766	NR_110765	101927150		NR_110765		LOC101927150	-	uncharacterized LOC101927150	ncRNA
19-PTNLD28-TUMOR_peak_89814	chr6	145031486	145031657	+	10.18236	NA	intron (NM_007124, intron 52 of 73)	intron (NM_007124, intron 52 of 73)	418698	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_23049	chr12	11706941	11707163	+	10.18236	NA	intron (NR_033890, intron 5 of 7)	intron (NR_033890, intron 5 of 7)	6088	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
19-PTNLD28-TUMOR_peak_17837	chr11	32253580	32253688	+	10.18236	NA	Intergenic	L1ME3A|LINE|L1	141157	NM_002901	5954	Hs.97887	NM_002901	HPRD:04111	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1, EF-hand calcium binding domain	protein-coding
19-PTNLD28-TUMOR_peak_18740	chr11	58925945	58926170	+	10.18236	NA	Intergenic	Intergenic	-12846	NM_001300727	23220	Hs.523696	NM_015177	ENSG00000110042	DTX4	RNF155	deltex 4, E3 ubiquitin ligase	protein-coding
19-PTNLD28-TUMOR_peak_7479	chr1	158622732	158622845	+	10.18236	NA	intron (NM_003126, intron 22 of 51)	intron (NM_003126, intron 22 of 51)	33718	NM_003126	6708	Hs.119825	NM_003126	HPRD:01685	SPTA1	EL2|HPP|HS3|SPH3|SPTA	spectrin, alpha, erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_4014	chr1	63087800	63087897	+	10.18236	NA	intron (NM_001271999, intron 12 of 48)	MLT1H|LTR|ERVL-MaLR	24690	NM_014495	27329	Hs.209153	NM_014495	HPRD:10381	ANGPTL3	ANG-5|ANGPT5|ANL3|FHBL2	angiopoietin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_75531	chr4	63796734	63796905	+	10.18236	NA	Intergenic	Intergenic	-769336	NR_110595	101927186	Hs.723269	NR_110595		LPHN3-AS1	-	LPHN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81001	chr5	82168153	82168303	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-12573	NR_105016	102546175		NR_105016		LINC01338	-	long intergenic non-protein coding RNA 1338	ncRNA
19-PTNLD28-TUMOR_peak_29163	chr13	113985865	113986002	+	10.18236	NA	intron (NM_001286732, intron 5 of 6)	intron (NM_001286732, intron 5 of 6)	-20055	NR_046541	100874068	Hs.661837	NR_046541		GRTP1-AS1	-	GRTP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86930	chr6	34309202	34309328	+	10.18236	NA	intron (NM_001202470, intron 6 of 8)	intron (NM_001202470, intron 6 of 8)	51192	NM_006703	11165	Hs.188882	NM_006703		NUDT3	DIPP|DIPP-1|DIPP1	nudix (nucleoside diphosphate linked moiety X)-type motif 3	protein-coding
19-PTNLD28-TUMOR_peak_84040	chr5	172521145	172521273	+	10.18236	NA	intron (NM_153607, intron 4 of 8)	L1MA9|LINE|L1	37854	NM_153607	153222	Hs.484195	NM_153607	HPRD:17308	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
19-PTNLD28-TUMOR_peak_81150	chr5	92165013	92165159	+	10.18236	NA	Intergenic	LTR7Y|LTR|ERV1	741963	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90454	chr6	165241154	165241336	+	10.18236	NA	Intergenic	Intergenic	481866	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_66313	chr3	5833366	5833532	+	10.18236	NA	Intergenic	Intergenic	-541509	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_99601	chr8	97239561	97239745	+	10.18236	NA	non-coding (NR_045639, exon 5 of 5)	non-coding (NR_045639, exon 5 of 5)	8209	NM_001199975	7381	Hs.131255	NM_006294	HPRD:11770	UQCRB	MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
19-PTNLD28-TUMOR_peak_14712	chr10	87924008	87924111	+	10.18236	NA	intron (NM_017551, intron 3 of 15)	intron (NM_017551, intron 3 of 15)	100486	NR_029907	442911		NR_029907		MIR346	MIRN346|hsa-mir-346|miR-346|miRNA346	microRNA 346	ncRNA
19-PTNLD28-TUMOR_peak_67067	chr3	19896689	19896824	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	78950	NM_144715	151651	Hs.733920	NM_144715	HPRD:08054	EFHB	CFAP21	EF-hand domain family, member B	protein-coding
19-PTNLD28-TUMOR_peak_2749	chr1	40870633	40870741	+	10.18236	NA	intron (NM_001198980, intron 1 of 9)	intron (NM_001198980, intron 1 of 9)	8215	NM_001198980	64744	Hs.15200	NM_022733	HPRD:12442	SMAP2	SMAP1L	small ArfGAP2	protein-coding
19-PTNLD28-TUMOR_peak_17291	chr11	13098599	13098744	+	10.18236	NA	Intergenic	Intergenic	67701	NM_001080521	644943	Hs.134650	NM_001080521		RASSF10	-	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
19-PTNLD28-TUMOR_peak_12251	chr10	18955891	18955997	+	10.18236	NA	intron (NM_178815, intron 2 of 5)	intron (NM_178815, intron 2 of 5)	7631	NM_178815	221079	Hs.25362	NM_178815	HPRD:12328	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
19-PTNLD28-TUMOR_peak_76468	chr4	105747439	105747687	+	10.18236	NA	Intergenic	Intergenic	-319469	NM_017628	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_67576	chr3	38216253	38216395	+	10.18236	NA	intron (NM_005109, intron 1 of 17)	L2a|LINE|L2	9298	NM_005109	9943	Hs.475970	NM_005109	HPRD:06809	OXSR1	OSR1	oxidative stress responsive 1	protein-coding
19-PTNLD28-TUMOR_peak_12245	chr10	18760961	18761077	+	10.18236	NA	intron (NM_201572, intron 3 of 13)	intron (NM_201572, intron 3 of 13)	71506	NM_201570	783	Hs.59093	NM_000724	HPRD:02473	CACNB2	CACNLB2|CAVB2|MYSB	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_44426	chr18	7417926	7418044	+	10.18236	NA	Intergenic	L2|LINE|L2	-149329	NM_002845	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_11341	chr1	243368406	243368648	+	10.18236	NA	intron (NM_001042405, intron 4 of 18)	L1MEc|LINE|L1	50181	NM_001042405	9859	Hs.533635	NM_014812	HPRD:17172	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170kDa	protein-coding
19-PTNLD28-TUMOR_peak_59403	chr20	719786	719914	+	10.18236	NA	Intergenic	Intergenic	29378	NM_033409	113278	Hs.283865	NM_033409	HPRD:09843	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 (riboflavin transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_13327	chr10	46378611	46378709	+	10.18236	NA	Intergenic	Intergenic	-29335	NM_001291379	119016	Hs.536192	NM_133446	HPRD:16771	AGAP4	AGAP-4|AGAP-8|AGAP8|CTGLF1|CTGLF5|MRIP2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 4	protein-coding
19-PTNLD28-TUMOR_peak_99938	chr8	104524258	104524495	+	10.18236	NA	intron (NM_001100117, intron 1 of 23)	intron (NM_001100117, intron 1 of 23)	11400	NM_001100117	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_58681	chr2	227620921	227621119	+	10.18236	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	42486	NM_005544	3667	Hs.471508	NM_005544	HPRD:00943	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_12102	chr10	13491424	13491551	+	10.18236	NA	intron (NM_152751, intron 7 of 8)	MIR|SINE|MIR	53489	NM_001100912	222389	Hs.498740	NM_152751	HPRD:12570	BEND7	C10orf30	BEN domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_63406	chr21	37632900	37633040	+	10.18236	NA	intron (NM_005128, intron 23 of 36)	intron (NM_005128, intron 23 of 36)	-59517	NM_015358	23515	Hs.421150	NM_015358	HPRD:10316	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_78169	chr4	182984230	182984337	+	10.18236	NA	Intergenic	Intergenic	81385	NR_027107	90768	Hs.175465	NM_178838		MGC45800	-	uncharacterized LOC90768	ncRNA
19-PTNLD28-TUMOR_peak_65051	chr22	30584140	30584295	+	10.18236	NA	Intergenic	Intergenic	58623	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_62788	chr21	15616294	15616537	+	10.18236	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	27949	NM_144770	54033	Hs.283828	NM_144770	HPRD:10185	RBM11	-	RNA binding motif protein 11	protein-coding
19-PTNLD28-TUMOR_peak_21062	chr11	109936041	109936191	+	10.18236	NA	Intergenic	Intergenic	-27971	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
19-PTNLD28-TUMOR_peak_72343	chr3	171671276	171671495	+	10.18236	NA	Intergenic	Intergenic	-52855	NR_046852	100874219	Hs.730556	NR_046852		TMEM212-AS1	-	TMEM212 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_12775	chr10	31364460	31364686	+	10.18236	NA	Intergenic	Intergenic	-43707	NM_001143767	220929	Hs.660642	NM_182755	HPRD:11247	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
19-PTNLD28-TUMOR_peak_62107	chr20	52765620	52765915	+	10.18236	NA	Intergenic	Intergenic	24749	NM_000782	1591	Hs.89663	NM_000782	HPRD:00522	CYP24A1	CP24|CYP24|HCAI|P450-CC24	cytochrome P450, family 24, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_78313	chr4	185609686	185609856	+	10.18236	NA	intron (NM_001300767, intron 10 of 12)	LTR80A|LTR|ERVL	39004	NM_001300768	201973	Hs.481307	NM_152683	HPRD:08742	PRIMPOL	CCDC111|MYP22	primase and polymerase (DNA-directed)	protein-coding
19-PTNLD28-TUMOR_peak_57531	chr2	192501054	192501201	+	10.18236	NA	Intergenic	L2c|LINE|L2	-41671	NM_001254736	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_106103	chr9	128578002	128578202	+	10.18236	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	67624	NM_001134778	5090	Hs.428027	NM_006195	HPRD:15938	PBX3	-	pre-B-cell leukemia homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_108728	chrX	71526810	71526951	+	10.18236	NA	promoter-TSS (NM_004143)	promoter-TSS (NM_004143)	-43	NM_004143	4435	Hs.40403	NM_004143	HPRD:02146	CITED1	MSG1	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1	protein-coding
19-PTNLD28-TUMOR_peak_17271	chr11	12849639	12849837	+	10.18236	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	153769	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_102483	chr9	22030184	22030532	+	10.18236	NA	intron (NR_047532, intron 2 of 13)	intron (NR_047532, intron 2 of 13)	-21046	NM_078487	1030	Hs.72901	NM_004936	HPRD:02696	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_89553	chr6	135108535	135108643	+	10.18236	NA	Intergenic	Intergenic	162671	NM_170771	64577	Hs.486520	NM_022568	HPRD:06974	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_10064	chr1	217202664	217202925	+	10.18236	NA	intron (NM_001243507, intron 1 of 7)	intron (NM_001243507, intron 1 of 7)	47518	NM_001243509	2104	Hs.444225	NM_001438	HPRD:04274	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
19-PTNLD28-TUMOR_peak_87250	chr6	38175269	38175385	+	10.18236	NA	intron (NM_001099272, intron 9 of 10)	AluJb|SINE|Alu	388020	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_50228	chr19	54162649	54162810	+	10.18236	NA	Intergenic	Intergenic	-7198	NR_030181	574459		NR_030181	miRBase:MI0003141	MIR512-2	MIRN512-2	microRNA 512-2	ncRNA
19-PTNLD28-TUMOR_peak_53296	chr2	69677927	69678044	+	10.18236	NA	Intergenic	LTR34|LTR|ERV1	-13225	NR_045631	27247	Hs.430439	NM_015700	HPRD:12163	NFU1	HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
19-PTNLD28-TUMOR_peak_55906	chr2	135306829	135306926	+	10.18236	NA	intron (NM_030923, intron 4 of 7)	intron (NM_030923, intron 4 of 7)	169694	NM_030923	81615	Hs.369471	NM_030923	HPRD:13178	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding
19-PTNLD28-TUMOR_peak_76312	chr4	95830913	95831033	+	10.18236	NA	intron (NM_001203, intron 2 of 12)	intron (NM_001203, intron 2 of 12)	-86410	NM_001256792	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_51496	chr2	21185941	21186085	+	10.18236	NA	Intergenic	Intergenic	80932	NM_000384	338	Hs.120759	NM_000384	HPRD:00133	APOB	FLDB|LDLCQ4	apolipoprotein B	protein-coding
19-PTNLD28-TUMOR_peak_110155	chrY	10003230	10003366	+	10.18236	NA	Intergenic	L1P1|LINE|L1	254891	NR_001540	252955	Hs.522846	NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis-specific transcript, Y-linked 23 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_45797	chr18	49764071	49764234	+	10.18236	NA	Intergenic	Intergenic	-102390	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_12194	chr10	16994205	16994390	+	10.18236	NA	exon (NM_001081, exon 33 of 67)	exon (NM_001081, exon 33 of 67)	-134844	NM_012425	6251	Hs.524161	NM_012425	HPRD:01551	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78053	chr4	172824716	172824853	+	10.18236	NA	intron (NM_001034845, intron 2 of 12)	L1PA3|LINE|L1	90209	NM_001034845	442117	Hs.386236	NM_001034845	ENSG00000174473	GALNTL6	GALNACT20|GALNT17|GalNAc-T6L	polypeptide N-acetylgalactosaminyltransferase-like 6	protein-coding
19-PTNLD28-TUMOR_peak_31650	chr14	90854918	90855027	+	10.18236	NA	Intergenic	Intergenic	-8355	NM_006888	801	Hs.282410	NM_006888	HPRD:00241	CALM1	CALML2|CAMI|CPVT4|DD132|PHKD|caM	calmodulin 1 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_35379	chr15	98045408	98045506	+	10.18236	NA	intron (NR_120324, intron 2 of 4)	intron (NR_120324, intron 2 of 4)	19584	NR_120324	101927286	Hs.611279	NR_120324		LOC101927286	-	uncharacterized LOC101927286	ncRNA
19-PTNLD28-TUMOR_peak_107751	chrX	20460790	20460956	+	10.18236	NA	Intergenic	Intergenic	-176123	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_30065	chr14	44848674	44848885	+	10.18236	NA	Intergenic	MER61A|LTR|ERV1	127720	NM_032135	84075	Hs.307086	NM_032135	HPRD:12638	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19-PTNLD28-TUMOR_peak_53135	chr2	65492378	65492496	+	10.18236	NA	intron (NM_005722, intron 8 of 8)	intron (NM_005722, intron 8 of 8)	37608	NM_001005386	10097	Hs.643727	NM_005722	HPRD:05023	ACTR2	ARP2	ARP2 actin-related protein 2 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_88534	chr6	83545915	83546182	+	10.18236	NA	Intergenic	Intergenic	229497	NM_198920	90025	Hs.148609	NM_198920	HPRD:12861	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
19-PTNLD28-TUMOR_peak_98313	chr8	38862485	38862589	+	10.18236	NA	intron (NR_027878, intron 1 of 20)	MER41B|LTR|ERV1	8032	NM_003816	8754	Hs.591852	NM_003816	HPRD:04091	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
19-PTNLD28-TUMOR_peak_32784	chr15	30146709	30146835	+	10.18236	NA	intron (NM_001301025, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	-32066	NM_003257	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_39002	chr16	81879788	81879954	+	10.18236	NA	intron (NM_002661, intron 2 of 32)	LTR16A1|LTR|ERVL	67008	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_12266	chr10	19881316	19881460	+	10.18236	NA	intron (NM_001142308, intron 33 of 39)	LTR16A|LTR|ERVL	136091	NR_120646	101928834	Hs.676482	NR_120646	ENSG00000233968	LOC101928834	-	uncharacterized LOC101928834	ncRNA
19-PTNLD28-TUMOR_peak_30114	chr14	47770107	47770328	+	10.18236	NA	intron (NM_001113498, intron 2 of 16)	intron (NM_001113498, intron 2 of 16)	42232	NM_182830	161357	Hs.436380	NM_182830	HPRD:14352	MDGA2	MAMDC1|c14_5286	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
19-PTNLD28-TUMOR_peak_108831	chrX	79845914	79846047	+	10.18236	NA	Intergenic	SVA_D|Other|Other	170034	NM_152630	169966	Hs.367959	NM_152630	HPRD:06643	FAM46D	CT1.26|CT112	family with sequence similarity 46, member D	protein-coding
19-PTNLD28-TUMOR_peak_69508	chr3	103218106	103218219	+	10.18236	NA	Intergenic	L2c|LINE|L2	727943	NR_030330	693127		NR_030330	miRBase:MI0003612	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
19-PTNLD28-TUMOR_peak_15775	chr10	116249398	116249577	+	10.18236	NA	intron (NM_001003407, intron 7 of 21)	intron (NM_001003407, intron 7 of 21)	37198	NM_006720	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_32750	chr15	29604622	29604737	+	10.18236	NA	intron (NM_015307, intron 2 of 10)	Tigger1|DNA|TcMar-Tigger	-42659	NM_138704	56160	Hs.94011	NM_138704	HPRD:10503	NDNL2	HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3	necdin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_26195	chr12	109740335	109740431	+	10.18236	NA	intron (NM_213596, intron 2 of 9)	MIR|SINE|MIR	6642	NM_213596	121643	Hs.528316	NM_213596	HPRD:13550	FOXN4	-	forkhead box N4	protein-coding
19-PTNLD28-TUMOR_peak_86747	chr6	32595733	32595903	+	10.18236	NA	Intergenic	Intergenic	-9365	NM_002122	3117	Hs.387679	NM_002122	HPRD:06765	HLA-DQA1	CD|CELIAC1|DQ-A1|GSE|HLA-DQA	major histocompatibility complex, class II, DQ alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_12479	chr10	25020982	25021119	+	10.18236	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-8453	NM_020824	57584	Hs.524195	NM_020824	HPRD:06445	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
19-PTNLD28-TUMOR_peak_40744	chr17	25920241	25920389	+	10.18236	NA	intron (NM_014238, intron 9 of 20)	intron (NM_014238, intron 9 of 20)	-37859	NR_024043	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	lectin, galactoside-binding, soluble, 9	protein-coding
19-PTNLD28-TUMOR_peak_45943	chr18	56106029	56106159	+	10.18236	NA	Intergenic	Intergenic	-12212	NR_029667	406906		NR_029667	miRBase:MI0000442	MIR122	MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A	microRNA 122	ncRNA
19-PTNLD28-TUMOR_peak_43413	chr17	73319262	73319379	+	10.18236	NA	intron (NM_203506, intron 3 of 4)	intron (NM_203506, intron 3 of 4)	-33790	NM_001126121	60386	Hs.514470	NM_021734	HPRD:08405	SLC25A19	DNC|MCPHA|MUP1|THMD3|THMD4|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding
19-PTNLD28-TUMOR_peak_33535	chr15	50540102	50540261	+	10.18236	NA	intron (NM_002112, intron 10 of 11)	intron (NM_002112, intron 10 of 11)	17981	NM_002112	3067	Hs.1481	NM_002112	HPRD:00817	HDC	-	histidine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_108638	chrX	68449402	68449602	+	10.18236	NA	Intergenic	Intergenic	50102	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
19-PTNLD28-TUMOR_peak_55226	chr2	118979710	118979823	+	10.18236	NA	Intergenic	Intergenic	133716	NM_016133	51141	Hs.7089	NM_016133	HPRD:16361	INSIG2	-	insulin induced gene 2	protein-coding
19-PTNLD28-TUMOR_peak_98065	chr8	31354704	31354862	+	10.18236	NA	Intergenic	LTR50|LTR|ERVL	-142485	NM_013962	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_72330	chr3	171372736	171372889	+	10.18236	NA	intron (NM_001130081, intron 20 of 25)	intron (NM_001130081, intron 20 of 25)	155472	NM_001130081	5337	Hs.382865	NM_002662	HPRD:03855	PLD1	-	phospholipase D1, phosphatidylcholine-specific	protein-coding
19-PTNLD28-TUMOR_peak_25154	chr12	68752758	68752877	+	10.18236	NA	Intergenic	Intergenic	-26656	NM_020128	56890	Hs.655702	NM_017440	HPRD:14376	MDM1	-	Mdm1 nuclear protein homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_71767	chr3	151694073	151694291	+	10.18236	NA	Intergenic	Intergenic	-48219	NR_110202	101928142	Hs.680207	NR_110202	ENSG00000242908	AADACL2-AS1	-	AADACL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87879	chr6	47748574	47748757	+	10.18236	NA	Intergenic	Intergenic	-1110	NM_181744	221391	Hs.213717	NM_181744		OPN5	GPR136|GRP136|PGR12|TMEM13	opsin 5	protein-coding
19-PTNLD28-TUMOR_peak_14593	chr10	81806763	81806883	+	10.18236	NA	non-coding (NR_027430, exon 5 of 5)	non-coding (NR_027430, exon 5 of 5)	-31579	NM_001270370	80195	Hs.169982	NM_025125	HPRD:08501	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
19-PTNLD28-TUMOR_peak_27151	chr12	129036336	129036447	+	10.18236	NA	intron (NM_001136103, intron 3 of 8)	intron (NM_001136103, intron 3 of 8)	257754	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_17641	chr11	21696000	21696225	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-518610	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_316	chr1	4435980	4436145	+	10.18236	NA	Intergenic	L1ME2|LINE|L1	-36049	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	ncRNA
19-PTNLD28-TUMOR_peak_21786	chr11	123077697	123077827	+	10.18236	NA	Intergenic	Intergenic	-11755	NM_024769	79827	Hs.591949	NM_024769	HPRD:16513	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR-like membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_2247	chr1	34302740	34302841	+	10.18236	NA	intron (NM_052896, intron 6 of 69)	intron (NM_052896, intron 6 of 69)	-23286	NM_145205	127540	Hs.568628	NM_145205	HPRD:14038	HMGB4	dJ1007G16.5	high mobility group box 4	protein-coding
19-PTNLD28-TUMOR_peak_66331	chr3	7154433	7154639	+	10.18236	NA	intron (NM_181874, intron 1 of 10)	Kanga1|DNA|TcMar-Tc2	251734	NM_000844	2917	Hs.606393	NM_000844	HPRD:04979	GRM7	GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87	glutamate receptor, metabotropic 7	protein-coding
19-PTNLD28-TUMOR_peak_98241	chr8	38172097	38172271	+	10.18236	NA	exon (NM_023034, exon 12 of 24)	exon (NM_023034, exon 12 of 24)	-45446	NM_001102560	84513	Hs.567619	NM_032483	HPRD:13720	PPAPDC1B	DPPL1|HTPAP	phosphatidic acid phosphatase type 2 domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_16338	chr10	134295659	134295775	+	10.18236	NA	Intergenic	MER34B|LTR|ERV1	37003	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_81520	chr5	110899257	110899422	+	10.18236	NA	intron (NR_040093, intron 1 of 6)	intron (NR_040093, intron 1 of 6)	-51182	NM_139164	134429	Hs.93842	NM_139164	HPRD:06133	STARD4	-	StAR-related lipid transfer (START) domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_43151	chr17	67231629	67231856	+	10.18236	NA	intron (NM_080282, intron 1 of 39)	intron (NM_080282, intron 1 of 39)	9214	NM_080282	10349	Hs.25377	NM_080282	HPRD:12400	ABCA10	EST698739	ATP-binding cassette, sub-family A (ABC1), member 10	protein-coding
19-PTNLD28-TUMOR_peak_7856	chr1	164702474	164702582	+	10.18236	NA	intron (NM_001204961, intron 2 of 7)	L2c|LINE|L2	41350	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
19-PTNLD28-TUMOR_peak_71298	chr3	140456036	140456171	+	10.18236	NA	Intergenic	Intergenic	59237	NM_152616	287015	Hs.343487	NM_152616	HPRD:15559	TRIM42	PPP1R40	tripartite motif containing 42	protein-coding
19-PTNLD28-TUMOR_peak_24847	chr12	58986660	58986867	+	10.18236	NA	intron (NR_120452, intron 3 of 7)	intron (NR_120452, intron 3 of 7)	188735	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_45043	chr18	25645477	25645628	+	10.18236	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	111893	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_32755	chr15	29728092	29728227	+	10.18236	NA	intron (NM_015307, intron 1 of 10)	intron (NM_015307, intron 1 of 10)	134768	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_19078	chr11	63466725	63466887	+	10.18236	NA	intron (NM_001265591, intron 1 of 3)	intron (NM_001265591, intron 1 of 3)	17884	NM_001265589	10313	Hs.743229	NM_006054	HPRD:18516	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
19-PTNLD28-TUMOR_peak_34307	chr15	71033492	71033618	+	10.18236	NA	intron (NM_018003, intron 1 of 18)	intron (NM_018003, intron 1 of 18)	22295	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_102006	chr9	3939854	3940030	+	10.18236	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	41296	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103056	chr9	38363134	38363307	+	10.18236	NA	Intergenic	Intergenic	-29441	NM_000692	219	Hs.436219	NM_000692	HPRD:00005	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
19-PTNLD28-TUMOR_peak_62911	chr21	19617532	19618178	+	10.18236	NA	promoter-TSS (NM_001204174)	promoter-TSS (NM_001204174)	-337	NM_001204174	140578	Hs.283725	NM_024944	HPRD:06261	CHODL	C21orf68|MT75	chondrolectin	protein-coding
19-PTNLD28-TUMOR_peak_107918	chrX	36975516	36976177	+	10.18236	NA	Intergenic	CpG	-50586	NM_001013736	442444	Hs.535216	NM_001013736	HPRD:18474	FAM47C	-	family with sequence similarity 47, member C	protein-coding
19-PTNLD28-TUMOR_peak_78106	chr4	175983496	175983632	+	10.18236	NA	Intergenic	L1P4a|LINE|L1	144055	NM_001278126	11086	Hs.126838	NM_014269	HPRD:05306	ADAM29	CT73|svph1	ADAM metallopeptidase domain 29	protein-coding
19-PTNLD28-TUMOR_peak_14932	chr10	94516971	94517176	+	10.18236	NA	Intergenic	Intergenic	67392	NM_002729	3087	Hs.118651	NM_002729		HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
19-PTNLD28-TUMOR_peak_12593	chr10	28287787	28287975	+	10.18236	NA	promoter-TSS (NM_001290020)	promoter-TSS (NM_001290020)	-46	NM_001290020	55130	Hs.127530	NM_018076	HPRD:10663	ARMC4	CILD23	armadillo repeat containing 4	protein-coding
19-PTNLD28-TUMOR_peak_16904	chr11	7511421	7511537	+	10.18236	NA	intron (NM_198474, intron 2 of 2)	intron (NM_198474, intron 2 of 2)	4879	NM_198474	283298	Hs.503500	NM_198474	HPRD:17661	OLFML1	UNQ564	olfactomedin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_89915	chr6	149403525	149403643	+	10.18236	NA	Intergenic	Intergenic	-117764	NR_038408	100128176	Hs.557541	NR_038408		LOC100128176	-	uncharacterized LOC100128176	ncRNA
19-PTNLD28-TUMOR_peak_104031	chr9	81227066	81227226	+	10.18236	NA	Intergenic	Intergenic	315155	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_34317	chr15	71089829	71090020	+	10.18236	NA	Intergenic	Intergenic	-34074	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_27835	chr13	36662349	36662506	+	10.18236	NA	intron (NM_004734, intron 3 of 17)	intron (NM_004734, intron 3 of 17)	43087	NM_004734	9201	Hs.507755	NM_004734		DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_28463	chr13	74003990	74004129	+	10.18236	NA	Intergenic	Intergenic	-134322	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
19-PTNLD28-TUMOR_peak_67478	chr3	35241708	35241838	+	10.18236	NA	intron (NR_110817, intron 2 of 3)	intron (NR_110817, intron 2 of 3)	193742	NR_110817	101928135	Hs.550715	NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
19-PTNLD28-TUMOR_peak_75624	chr4	72285010	72285106	+	10.18236	NA	intron (NM_001098484, intron 7 of 25)	L1PA3|LINE|L1	80288	NM_003759	8671	Hs.5462	NM_003759	HPRD:04516	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|pNBC	solute carrier family 4 (sodium bicarbonate cotransporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_52757	chr2	52146670	52146770	+	10.18236	NA	Intergenic	Intergenic	-887046	NM_001135659	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_65562	chr22	39616980	39617142	+	10.18236	NA	Intergenic	Intergenic	19853	NM_033016	5155	Hs.1976	NM_002608	HPRD:01815	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_10777	chr1	230322058	230322213	+	10.18236	NA	intron (NM_001291866, intron 2 of 15)	MIRc|SINE|MIR	119193	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_40668	chr17	21454371	21454611	+	10.18236	NA	exon (NM_001113434, exon 1 of 2)	exon (NM_001113434, exon 1 of 2)	450	NM_001113434	339263	Hs.514016	NM_001113434	ENSG00000212719	C17orf51	-	chromosome 17 open reading frame 51	protein-coding
19-PTNLD28-TUMOR_peak_68925	chr3	69459632	69459740	+	10.18236	NA	Intergenic	Intergenic	-24231	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_24264	chr12	52182813	52182918	+	10.18236	NA	intron (NM_014191, intron 23 of 26)	intron (NM_014191, intron 23 of 26)	42836	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_3758	chr1	57239107	57239236	+	10.18236	NA	intron (NM_001004303, intron 4 of 19)	MIRc|SINE|MIR	46198	NM_001004303	199920	Hs.437655	NM_001004303	HPRD:14120	C1orf168	-	chromosome 1 open reading frame 168	protein-coding
19-PTNLD28-TUMOR_peak_78026	chr4	170442402	170442495	+	10.18236	NA	intron (NM_001199398, intron 18 of 34)	L1HS|LINE|L1	91330	NM_012224	4750	Hs.481181	NM_012224	HPRD:06847	NEK1	NY-REN-55|SRPS2|SRPS2A|SRTD6	NIMA-related kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_3958	chr1	62158246	62158369	+	10.18236	NA	intron (NM_032027, intron 5 of 6)	AluJo|SINE|Alu	32788	NM_032027	83941	Hs.656790	NM_032027	HPRD:16540	TM2D1	BBP	TM2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_11310	chr1	241809592	241809768	+	10.18236	NA	Intergenic	Intergenic	-5900	NM_144625	128025	Hs.97527	NM_144625	HPRD:13412	WDR64	-	WD repeat domain 64	protein-coding
19-PTNLD28-TUMOR_peak_106508	chr9	134955237	134955384	+	10.18236	NA	promoter-TSS (NM_004269)	promoter-TSS (NM_004269)	-36	NM_001253881	9442	Hs.374262	NM_004269	HPRD:05438	MED27	CRAP34|CRSP34|CRSP8|TRAP37	mediator complex subunit 27	protein-coding
19-PTNLD28-TUMOR_peak_21487	chr11	118166537	118166787	+	10.18236	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-8633	NM_000733	916	Hs.3003	NM_000733	HPRD:08923	CD3E	IMD18|T3E|TCRE	CD3e molecule, epsilon (CD3-TCR complex)	protein-coding
19-PTNLD28-TUMOR_peak_97354	chr8	17770223	17770349	+	10.18236	NA	Intergenic	HERVK-int|LTR|ERVK	-10080	NM_006197	5108	Hs.491148	NM_006197	HPRD:02624	PCM1	PTC4	pericentriolar material 1	protein-coding
19-PTNLD28-TUMOR_peak_109665	chrX	142406964	142407085	+	10.18236	NA	Intergenic	L1PBa1|LINE|L1	198279	NM_001009609	139067	Hs.447320	NM_001009609	HPRD:18092	SPANXN3	CT11.8|SPANX-N3	SPANX family, member N3	protein-coding
19-PTNLD28-TUMOR_peak_75581	chr4	69149481	69149720	+	10.18236	NA	Intergenic	Intergenic	-38188	NM_182502	132724	Hs.407122	NM_182502	HPRD:13219	TMPRSS11B	-	transmembrane protease, serine 11B	protein-coding
19-PTNLD28-TUMOR_peak_26508	chr12	117463396	117463566	+	10.18236	NA	intron (NM_012174, intron 9 of 10)	intron (NM_012174, intron 9 of 10)	-38339	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
19-PTNLD28-TUMOR_peak_55483	chr2	123098683	123098807	+	10.18236	NA	Intergenic	Intergenic	585624	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_13574	chr10	50898807	50899077	+	10.18236	NA	intron (NM_182554, intron 1 of 2)	intron (NM_182554, intron 1 of 2)	11258	NM_001042427	282966	Hs.131287	NM_182554		C10orf53	-	chromosome 10 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_33944	chr15	64162901	64163016	+	10.18236	NA	Intergenic	Intergenic	-36811	NM_003922	8925	Hs.210385	NM_003922	HPRD:06894	HERC1	p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
19-PTNLD28-TUMOR_peak_58254	chr2	215746496	215746645	+	10.18236	NA	intron (NR_110292, intron 2 of 3)	LTR43|LTR|ERV1	71617	NR_110292	101928103	Hs.665619	NR_110292	ENSG00000229267	LOC101928103	-	uncharacterized LOC101928103	ncRNA
19-PTNLD28-TUMOR_peak_57289	chr2	182417623	182417791	+	10.18236	NA	intron (NM_001030312, intron 2 of 9)	intron (NM_001030312, intron 2 of 9)	96088	NM_000885	3676	Hs.440955	NM_000885	HPRD:01894	ITGA4	CD49D|IA4	integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_79237	chr5	23419354	23419459	+	10.18236	NA	Intergenic	Intergenic	-88318	NM_020227	56979	Hs.283096	NM_020227	HPRD:17905	PRDM9	MEISETZ|MSBP3|PFM6|PRMD9|ZNF899	PR domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_81426	chr5	105751375	105751500	+	10.18236	NA	Intergenic	Intergenic	595278	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_88919	chr6	105073493	105073667	+	10.18236	NA	Intergenic	Intergenic	234214	NR_104424	57531	Hs.434340	NM_020771	HPRD:17086	HACE1	-	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_13636	chr10	53004712	53004873	+	10.18236	NA	intron (NM_006258, intron 2 of 17)	intron (NM_006258, intron 2 of 17)	-54541	NR_030336	693190		NR_030336		MIR605	MIRN605|hsa-mir-605	microRNA 605	ncRNA
19-PTNLD28-TUMOR_peak_90238	chr6	158056977	158057135	+	10.18236	NA	intron (NM_153746, intron 5 of 8)	intron (NM_153746, intron 5 of 8)	106892	NR_037463	100500899		NR_037463		MIR3692	-	microRNA 3692	ncRNA
19-PTNLD28-TUMOR_peak_36992	chr16	27760315	27760492	+	10.18236	NA	intron (NM_015202, intron 15 of 27)	MER20B|DNA|hAT-Charlie	139075	NM_144675	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_33976	chr15	64736347	64736523	+	10.18236	NA	intron (NM_016213, intron 11 of 12)	intron (NM_016213, intron 11 of 12)	-55184	NM_015042	23060	Hs.595451	NM_015042	HPRD:18754	ZNF609	-	zinc finger protein 609	protein-coding
19-PTNLD28-TUMOR_peak_98879	chr8	57069684	57070069	+	10.18236	NA	Intergenic	CpG	-43335	NM_005372	4342	Hs.533432	NM_005372	HPRD:01816	MOS	MSV	v-mos Moloney murine sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_501	chr1	8242656	8242810	+	10.18236	NA	Intergenic	Intergenic	-135412	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_67274	chr3	27549122	27549282	+	10.18236	NA	Intergenic	Intergenic	-23291	NM_001258379	9497	Hs.250072	NM_003615	HPRD:04521	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding
19-PTNLD28-TUMOR_peak_102661	chr9	32992994	32993110	+	10.18236	NA	intron (NR_036576, intron 1 of 7)	intron (NR_036576, intron 1 of 7)	8522	NR_036579	54840	Hs.20158	NM_017692	HPRD:05892	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
19-PTNLD28-TUMOR_peak_65814	chr22	43618464	43618774	+	10.18236	NA	intron (NM_173050, intron 12 of 21)	intron (NM_173050, intron 12 of 21)	-35482	NM_015140	23170	Hs.517670	NM_015140	HPRD:13782	TTLL12	dJ526I14.2	tubulin tyrosine ligase-like family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_98847	chr8	56389457	56389551	+	10.18236	NA	intron (NM_052898, intron 2 of 2)	L1PA4|LINE|L1	-21623	NR_027765	100133234	Hs.729852	NR_027765	ENSG00000248522	SBF1P1	-	SET binding factor 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_71486	chr3	145051139	145051264	+	10.18236	NA	Intergenic	LTR12C|LTR|ERV1	828081	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_37700	chr16	49486556	49486815	+	10.18236	NA	Intergenic	Intergenic	78877	NM_144602	123970	Hs.125875	NM_144602	HPRD:14560	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_64654	chr22	23190700	23190800	+	10.18236	NA	Intergenic	Intergenic	25480	NR_030755	723778		NR_030755	miRBase:MI0003665	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
19-PTNLD28-TUMOR_peak_39602	chr17	1157121	1157256	+	10.18236	NA	Intergenic	Intergenic	-16670	NM_001164405	727857	Hs.723790	NM_001164405		BHLHA9	BHLHF42	basic helix-loop-helix family, member a9	protein-coding
19-PTNLD28-TUMOR_peak_77873	chr4	160606650	160606913	+	10.18236	NA	Intergenic	Intergenic	417783	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_100493	chr8	123931373	123931468	+	10.18236	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	123243	NM_024295	79139	Hs.241576	NM_024295	HPRD:12302	DERL1	DER-1|DER1	derlin 1	protein-coding
19-PTNLD28-TUMOR_peak_25565	chr12	92172831	92172978	+	10.18236	NA	Intergenic	Intergenic	362585	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	C12orf79	-	chromosome 12 open reading frame 79	protein-coding
19-PTNLD28-TUMOR_peak_95471	chr7	133707416	133707524	+	10.18236	NA	intron (NM_021807, intron 17 of 17)	intron (NM_021807, intron 17 of 17)	-104635	NM_144648	136332	Hs.149774	NM_144648	HPRD:08734	LRGUK	-	leucine-rich repeats and guanylate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_8114	chr1	169681328	169681418	+	10.18236	NA	promoter-TSS (NM_000655)	promoter-TSS (NM_000655)	-530	NM_000655	6402	Hs.728756	NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
19-PTNLD28-TUMOR_peak_44991	chr18	23848486	23848726	+	10.18236	NA	intron (NR_121653, intron 3 of 15)	ERV3-16A3_I-int|LTR|ERVL	41759	NM_005640	6875	Hs.369519	NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_36309	chr16	11697763	11697884	+	10.18236	NA	Intergenic	AluY|SINE|Alu	-16501	NR_024320	9516	Hs.459940	NM_004862	HPRD:10354	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide-induced TNF factor	protein-coding
19-PTNLD28-TUMOR_peak_32695	chr15	27759816	27759941	+	10.18236	NA	intron (NM_033223, intron 6 of 9)	intron (NM_033223, intron 6 of 9)	-353412	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	LOC101928869	-	uncharacterized LOC101928869	ncRNA
19-PTNLD28-TUMOR_peak_13782	chr10	61768821	61768917	+	10.18236	NA	Intergenic	Intergenic	-48198	NR_024340	283025	Hs.522955	NM_001017982	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
19-PTNLD28-TUMOR_peak_71790	chr3	152454872	152455003	+	10.18236	NA	Intergenic	LTR16A1|LTR|ERVL	-97799	NM_002563	5028	Hs.654526	NM_002563	HPRD:03103	P2RY1	P2Y1	purinergic receptor P2Y, G-protein coupled, 1	protein-coding
19-PTNLD28-TUMOR_peak_107502	chrX	9498961	9499325	+	10.18236	NA	intron (NM_005647, intron 2 of 17)	intron (NM_005647, intron 2 of 17)	65942	NM_005647	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_90388	chr6	161213025	161213145	+	10.18236	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	89860	NM_001168338	5340	Hs.143436	NM_000301	HPRD:01417	PLG	-	plasminogen	protein-coding
19-PTNLD28-TUMOR_peak_52715	chr2	48834537	48834656	+	10.18236	NA	intron (NM_172311, intron 3 of 10)	intron (NM_172311, intron 3 of 10)	-10323	NM_006872	11036	Hs.732016	NM_006872	HPRD:05640	GTF2A1L	ALF	general transcription factor IIA, 1-like	protein-coding
19-PTNLD28-TUMOR_peak_99438	chr8	87456012	87456147	+	10.18236	NA	intron (NM_007013, intron 18 of 24)	L2a|LINE|L2	64930	NM_001286719	51115	Hs.145386	NM_016033	HPRD:13042	RMDN1	FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
19-PTNLD28-TUMOR_peak_20776	chr11	98113568	98113764	+	10.18236	NA	Intergenic	Intergenic	-622771	NR_107016	102465857		NR_107016		MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
19-PTNLD28-TUMOR_peak_58694	chr2	228045146	228045438	+	10.18236	NA	intron (NM_000091, intron 1 of 51)	intron (NM_000091, intron 1 of 51)	16011	NM_000091	1285	Hs.570065	NM_000091	HPRD:00354	COL4A3	-	collagen, type IV, alpha 3 (Goodpasture antigen)	protein-coding
19-PTNLD28-TUMOR_peak_69840	chr3	112607267	112607540	+	10.18236	NA	Intergenic	Intergenic	-42606	NM_001008784	344807	Hs.531814	NM_001008784	HPRD:16691	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_19819	chr11	71575170	71575294	+	10.18236	NA	Intergenic	LTR79|LTR|ERVL	-14267	NM_001242853	100129216	Hs.740246	NM_001242853		LOC100129216	-	beta-defensin 131-like	protein-coding
19-PTNLD28-TUMOR_peak_66468	chr3	9642412	9642586	+	10.18236	NA	Intergenic	CpG	-47013	NM_198560	375323	Hs.56782	NM_198560		LHFPL4	-	lipoma HMGIC fusion partner-like 4	protein-coding
19-PTNLD28-TUMOR_peak_74711	chr4	20566889	20567046	+	10.18236	NA	intron (NM_001289135, intron 25 of 35)	intron (NM_001289135, intron 25 of 35)	37069	NR_029631	407000		NR_029631		MIR218-1	MIRN218-1|mir-218-1	microRNA 218-1	ncRNA
19-PTNLD28-TUMOR_peak_109461	chrX	130385322	130385511	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	37619	NM_001170963	3547	Hs.22111	NM_001555	HPRD:02138	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	immunoglobulin superfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_34036	chr15	65947445	65947541	+	10.18236	NA	3' UTR (NM_004727, exon 10 of 10)	3' UTR (NM_004727, exon 10 of 10)	12250	NM_001254740	9187	Hs.173092	NM_004727	HPRD:04685	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_89573	chr6	135809328	135809448	+	10.18236	NA	intron (NM_017651, intron 4 of 27)	L1M6|LINE|L1	9515	NM_017651	54806	Hs.386684	NM_017651	HPRD:10597	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
19-PTNLD28-TUMOR_peak_92539	chr7	50725105	50725461	+	10.18236	NA	intron (NM_001001550, intron 4 of 15)	intron (NM_001001550, intron 4 of 15)	47715	NM_001001550	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_13844	chr10	63752592	63752722	+	10.18236	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	16596	NR_049858	100847083		NR_049858		MIR548AV	-	microRNA 548av	ncRNA
19-PTNLD28-TUMOR_peak_104059	chr9	82239226	82239471	+	10.18236	NA	intron (NM_001282749, intron 5 of 18)	intron (NM_001282749, intron 5 of 18)	52660	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4	transducin-like enhancer of split 4	protein-coding
19-PTNLD28-TUMOR_peak_70784	chr3	129977447	129977567	+	10.18236	NA	intron (NR_027898, intron 19 of 22)	intron (NR_027898, intron 19 of 22)	45844	NR_027898	646300	Hs.170475	NR_027898		COL6A4P2	COL6A4	collagen, type VI, alpha 4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_67856	chr3	45252144	45252276	+	10.18236	NA	Intergenic	Intergenic	15604	NM_015444	25907	Hs.740403	NM_015444	HPRD:15252	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_5064	chr1	95552855	95553008	+	10.18236	NA	Intergenic	Intergenic	-5142	NM_001199679	148534	Hs.483512	NM_152487	HPRD:08110	TMEM56	-	transmembrane protein 56	protein-coding
19-PTNLD28-TUMOR_peak_29625	chr14	24995663	24995777	+	10.18236	NA	Intergenic	L1P1|LINE|L1	-18249	NM_001836	1215	Hs.135626	NM_001836	HPRD:00346	CMA1	CYH|MCT1|chymase	chymase 1, mast cell	protein-coding
19-PTNLD28-TUMOR_peak_35336	chr15	94177358	94177535	+	10.18236	NA	Intergenic	Intergenic	-222343	NR_120321	101927153	Hs.371900	NR_120321	ENSG00000258476	LOC101927153	-	uncharacterized LOC101927153	ncRNA
19-PTNLD28-TUMOR_peak_79658	chr5	41128546	41128664	+	10.18236	NA	Intergenic	Intergenic	-57161	NM_173489	133558	Hs.97714	NM_173489	HPRD:08808	MROH2B	HEATR7B2	maestro heat-like repeat family member 2B	protein-coding
19-PTNLD28-TUMOR_peak_52314	chr2	41421503	41421617	+	10.18236	NA	Intergenic	Intergenic	-681985	NM_001112802	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_11959	chr10	9111244	9111351	+	10.18236	NA	Intergenic	Intergenic	-206279	NR_108039	100507163	Hs.649223	NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
19-PTNLD28-TUMOR_peak_89312	chr6	122293155	122293332	+	10.18236	NA	Intergenic	Intergenic	-427453	NM_001135564	3298	Hs.158195	NM_004506	HPRD:00779	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_88597	chr6	86100649	86100782	+	10.18236	NA	Intergenic	Intergenic	-58587	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_21921	chr11	125972435	125972800	+	10.18236	NA	Intergenic	L2b|LINE|L2	-39430	NM_001243597	50937	Hs.38034	NM_016952	HPRD:16372	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_27145	chr12	128971640	128971792	+	10.18236	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	193079	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_108463	chrX	56765190	56765417	+	10.18236	NA	intron (NR_015367, intron 2 of 2)	MER21A|LTR|ERVL	-1286	NR_002308	442454	Hs.663220	NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_75601	chr4	71225159	71225268	+	10.18236	NA	Intergenic	Intergenic	-1280	NM_012390	26952	Hs.701334	NM_012390	HPRD:18077	SMR3A	P-B1|PBI|PRL5|PROL5	submaxillary gland androgen regulated protein 3A	protein-coding
19-PTNLD28-TUMOR_peak_75633	chr4	73035066	73035174	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	130271	NM_001144756	10886	Hs.99231	NM_004885	HPRD:16244	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_109699	chrX	148340921	148341022	+	10.18236	NA	Intergenic	L2b|LINE|L2	245913	NM_000202	3423	Hs.460960	NM_000202	HPRD:02402	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_63371	chr21	36871625	36872043	+	10.18236	NA	intron (NR_073512, intron 1 of 2)	L1PA2|LINE|L1	81228	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_99148	chr8	71060329	71060509	+	10.18236	NA	intron (NM_006540, intron 12 of 22)	intron (NM_006540, intron 12 of 22)	-76857	NM_024504	63978	Hs.736037	NM_024504	HPRD:11457	PRDM14	PFM11	PR domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_54381	chr2	98567131	98567330	+	10.18236	NA	intron (NM_015348, intron 1 of 40)	intron (NM_015348, intron 1 of 40)	45124	NM_015348	23505	Hs.469376	NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
19-PTNLD28-TUMOR_peak_93882	chr7	90802822	90803010	+	10.18236	NA	intron (NM_001287137, intron 12 of 12)	L1HS|LINE|L1	-90867	NM_003505	8321	Hs.94234	NM_003505	HPRD:04558	FZD1	-	frizzled class receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_94064	chr7	96044356	96044463	+	10.18236	NA	Intergenic	Intergenic	88426	NM_001201450	401388	Hs.734935	NM_207503	HPRD:16959	C7orf76	-	chromosome 7 open reading frame 76	protein-coding
19-PTNLD28-TUMOR_peak_65040	chr22	30375341	30375487	+	10.18236	NA	intron (NM_021090, intron 5 of 19)	AluY|SINE|Alu	-27624	NR_106876	102466742		NR_106876		MIR6818	hsa-mir-6818	microRNA 6818	ncRNA
19-PTNLD28-TUMOR_peak_92851	chr7	64295408	64295572	+	10.18236	NA	intron (NR_073389, intron 2 of 2)	HERV-Fc1_LTR1|LTR|ERV1	40724	NM_001271640	7697	Hs.184080	NM_006524	HPRD:07244	ZNF138	pHZ-32	zinc finger protein 138	protein-coding
19-PTNLD28-TUMOR_peak_99303	chr8	81191778	81191909	+	10.18236	NA	Intergenic	Intergenic	38219	NR_049894	100847056		NR_049894	miRBase:MI0019316	MIR5708	-	microRNA 5708	ncRNA
19-PTNLD28-TUMOR_peak_73157	chr3	189755944	189756217	+	10.18236	NA	intron (NM_001134418, intron 1 of 14)	intron (NM_001134418, intron 1 of 14)	82828	NM_018192	55214	Hs.374191	NM_018192	HPRD:17270	LEPREL1	MCVD|MLAT4|P3H2	leprecan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_75087	chr4	41622671	41622947	+	10.18236	NA	intron (NM_001289122, intron 8 of 25)	intron (NM_001289122, intron 8 of 25)	8020	NM_001112720	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_52077	chr2	34644973	34645222	+	10.18236	NA	Intergenic	MER77|LTR|ERVL	-691813	NR_003143	151325	Hs.528847	NM_207329	HPRD:14793	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_80771	chr5	75566053	75566286	+	10.18236	NA	intron (NM_001297716, intron 4 of 12)	intron (NM_001297716, intron 4 of 12)	-132911	NM_006633	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_14972	chr10	95576019	95576144	+	10.18236	NA	Intergenic	Intergenic	58515	NM_005097	9211	Hs.533670	NM_005097	HPRD:05216	LGI1	ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099	leucine-rich, glioma inactivated 1	protein-coding
19-PTNLD28-TUMOR_peak_61980	chr20	51238747	51238889	+	10.18236	NA	intron (NR_110038, intron 2 of 2)	intron (NR_110038, intron 2 of 2)	1441	NR_110038	101927700	Hs.434465	NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
19-PTNLD28-TUMOR_peak_91838	chr7	30459562	30459668	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	29114	NR_108081	100506516		NR_108081		LINC01176	-	long intergenic non-protein coding RNA 1176	ncRNA
19-PTNLD28-TUMOR_peak_70785	chr3	129995161	129995325	+	10.18236	NA	Intergenic	Intergenic	63580	NR_027898	646300	Hs.170475	NR_027898		COL6A4P2	COL6A4	collagen, type VI, alpha 4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_105121	chr9	107815556	107815654	+	10.18236	NA	Intergenic	LTR26|LTR|ERV1	-125078	NM_005502	19	Hs.659274	NM_005502	HPRD:02501	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_23096	chr12	12658938	12659045	+	10.18236	NA	intron (NM_030640, intron 3 of 6)	intron (NM_030640, intron 3 of 6)	56457	NM_030640	80824	Hs.536535	NM_030640		DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
19-PTNLD28-TUMOR_peak_98600	chr8	47914735	47914866	+	10.18236	NA	Intergenic	BSR/Beta|Satellite|Satellite	162292	NR_027013	497634	Hs.406982	NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	ncRNA
19-PTNLD28-TUMOR_peak_12259	chr10	19383043	19383432	+	10.18236	NA	intron (NM_001142308, intron 4 of 39)	L1HS|LINE|L1	45537	NM_001142308	340895	Hs.646734	NM_001142308		MALRD1	C10orf112|DIET1|bA265G8.2	MAM and LDL receptor class A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_22449	chr12	1885919	1886012	+	10.18236	NA	intron (NM_024551, intron 3 of 7)	intron (NM_024551, intron 3 of 7)	-43468	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine-rich repeats and transmembrane domains 2	protein-coding
19-PTNLD28-TUMOR_peak_83806	chr5	169083656	169083849	+	10.18236	NA	intron (NM_004946, intron 2 of 51)	intron (NM_004946, intron 2 of 51)	19501	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_30654	chr14	61887131	61887318	+	10.18236	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	99063	NM_006255	5583	Hs.333907	NM_006255	HPRD:05669	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C, eta	protein-coding
19-PTNLD28-TUMOR_peak_17683	chr11	25670794	25670891	+	10.18236	NA	Intergenic	L1PA3|LINE|L1	-682836	NM_031418	63982	Hs.91791	NM_031418	HPRD:15526	ANO3	C11orf25|DYT23|DYT24|TMEM16C	anoctamin 3	protein-coding
19-PTNLD28-TUMOR_peak_20967	chr11	106914521	106914638	+	10.18236	NA	Intergenic	Intergenic	-25408	NM_001256424	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_27149	chr12	129009671	129009775	+	10.18236	NA	intron (NM_001136103, intron 2 of 8)	MLT1L|LTR|ERVL-MaLR	231086	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_7850	chr1	164644883	164644993	+	10.18236	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	98940	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
19-PTNLD28-TUMOR_peak_79561	chr5	38209019	38209147	+	10.18236	NA	Intergenic	Intergenic	-49428	NM_001205301	133584	Hs.20103	NM_152403	HPRD:13433	EGFLAM	AGRINL|AGRNL|PIKA	EGF-like, fibronectin type III and laminin G domains	protein-coding
19-PTNLD28-TUMOR_peak_99943	chr8	105084702	105084926	+	10.18236	NA	intron (NM_001100117, intron 19 of 23)	intron (NM_001100117, intron 19 of 23)	-150749	NM_001282882	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_46158	chr18	64678304	64678426	+	10.18236	NA	Intergenic	Intergenic	-70456	NR_049809	100847002		NR_049809	miRBase:MI0017879	MIR5011	-	microRNA 5011	ncRNA
19-PTNLD28-TUMOR_peak_17644	chr11	21795784	21796082	+	10.18236	NA	Intergenic	Intergenic	-418789	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_26368	chr12	112628485	112628589	+	10.18236	NA	intron (NM_001109662, intron 60 of 75)	intron (NM_001109662, intron 60 of 75)	-27412	NR_106921	102465519		NR_106921		MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
19-PTNLD28-TUMOR_peak_31557	chr14	84870160	84870286	+	10.18236	NA	Intergenic	Intergenic	-990000	NR_102737	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_82869	chr5	142443799	142444068	+	10.18236	NA	intron (NM_015071, intron 17 of 22)	intron (NM_015071, intron 17 of 22)	-195458	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108540	chrX	63238621	63238734	+	10.18236	NA	Intergenic	L1HS|LINE|L1	186947	NM_152424	139285	Hs.314225	NM_152424	HPRD:06565	AMER1	FAM123B|OSCS|WTX	APC membrane recruitment protein 1	protein-coding
19-PTNLD28-TUMOR_peak_39783	chr17	4151059	4151210	+	10.18236	NA	intron (NR_047571, intron 1 of 23)	MIR|SINE|MIR	16008	NM_001257999	51479	Hs.696087	NM_016376	HPRD:09717	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33854	chr15	62275396	62275563	+	10.18236	NA	intron (NM_001018088, intron 20 of 81)	intron (NM_001018088, intron 20 of 81)	77185	NM_017684	54832	Hs.511668	NM_017684	HPRD:12323	VPS13C	-	vacuolar protein sorting 13 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70052	chr3	119514014	119514186	+	10.18236	NA	intron (NM_022002, intron 1 of 8)	intron (NM_022002, intron 1 of 8)	12543	NM_022002	8856	Hs.7303	NM_003889	HPRD:04346	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1, group I, member 2	protein-coding
19-PTNLD28-TUMOR_peak_99155	chr8	71248272	71248453	+	10.18236	NA	intron (NM_006540, intron 1 of 22)	Tigger3c|DNA|TcMar-Tigger	67658	NM_006540	10499	Hs.446678	NM_006540	HPRD:09066	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
19-PTNLD28-TUMOR_peak_78082	chr4	174781427	174781566	+	10.18236	NA	Intergenic	Intergenic	329887	NR_003679	79804	Hs.61435	NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301	HAND2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_56144	chr2	145299091	145299220	+	10.18236	NA	intron (NR_110570, intron 1 of 2)	(TG)n|Simple_repeat|Simple_repeat	19720	NR_110570	101928455	Hs.333693	NR_110570	ENSG00000232606	LINC01412	-	long intergenic non-protein coding RNA 1412	ncRNA
19-PTNLD28-TUMOR_peak_88069	chr6	54424958	54425133	+	10.18236	NA	Intergenic	Intergenic	251842	NM_014464	27283	Hs.127011	NM_014464	HPRD:09483	TINAG	TIN-AG	tubulointerstitial nephritis antigen	protein-coding
19-PTNLD28-TUMOR_peak_71220	chr3	139087004	139087140	+	10.18236	NA	exon (NM_004766, exon 13 of 22)	exon (NM_004766, exon 13 of 22)	21450	NM_004766	9276	Hs.681616	NM_004766	HPRD:06103	COPB2	beta'-COP	coatomer protein complex, subunit beta 2 (beta prime)	protein-coding
19-PTNLD28-TUMOR_peak_83863	chr5	170050679	170050804	+	10.18236	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	119701	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42471	chr17	55175266	55175414	+	10.18236	NA	intron (NM_001242903, intron 2 of 11)	intron (NM_001242903, intron 2 of 11)	12205	NM_001242902	8165	Hs.463506	NM_003488	HPRD:03905	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A kinase (PRKA) anchor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_67168	chr3	23931051	23931294	+	10.18236	NA	intron (NM_182666, intron 4 of 4)	intron (NM_182666, intron 4 of 4)	-27123	NM_002948	6138	Hs.381219	NM_002948	HPRD:16043	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10	ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_100644	chr8	126123209	126123331	+	10.18236	NA	intron (NM_173685, intron 3 of 7)	intron (NM_173685, intron 3 of 7)	19187	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_44208	chr18	395181	395291	+	10.18236	NA	intron (NM_130386, intron 2 of 9)	intron (NM_130386, intron 2 of 9)	105493	NM_130386	81035	Hs.464422	NM_030781	HPRD:06358	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
19-PTNLD28-TUMOR_peak_76879	chr4	122647915	122648073	+	10.18236	NA	Intergenic	Intergenic	-29847	NM_001154	308	Hs.480653	NM_001154	HPRD:00568	ANXA5	ANX5|ENX2|HEL-S-7|PP4|RPRGL3	annexin A5	protein-coding
19-PTNLD28-TUMOR_peak_76283	chr4	93623084	93623190	+	10.18236	NA	intron (NM_001286838, intron 2 of 14)	intron (NM_001286838, intron 2 of 14)	397587	NM_001510	2895	Hs.162727	NM_001510	HPRD:06781	GRID2	GluD2	glutamate receptor, ionotropic, delta 2	protein-coding
19-PTNLD28-TUMOR_peak_56475	chr2	158184125	158184302	+	10.18236	NA	promoter-TSS (NM_001009959)	promoter-TSS (NM_001009959)	-67	NM_001009959	57471	Hs.443894	NM_020711	HPRD:13838	ERMN	JN|KIAA1189|ermin	ermin, ERM-like protein	protein-coding
19-PTNLD28-TUMOR_peak_88084	chr6	54800665	54800791	+	10.18236	NA	intron (NM_001010872, intron 4 of 4)	L2a|LINE|L2	89159	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_97052	chr8	8447617	8447756	+	10.18236	NA	Intergenic	Intergenic	-111980	NM_194284	137075	Hs.183617	NM_194284	HPRD:13069	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
19-PTNLD28-TUMOR_peak_20118	chr11	75537571	75537721	+	10.18236	NA	intron (NM_003369, intron 1 of 14)	intron (NM_003369, intron 1 of 14)	11434	NM_003369	7405	Hs.202470	NM_003369		UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
19-PTNLD28-TUMOR_peak_15483	chr10	106051271	106051453	+	10.18236	NA	intron (NM_183239, intron 5 of 6)	intron (NM_183239, intron 5 of 6)	16475	NM_001191015	119391	Hs.107384	NM_183239	HPRD:13614	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
19-PTNLD28-TUMOR_peak_10960	chr1	234201718	234201829	+	10.18236	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-148184	NM_001300845	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_108993	chrX	101914741	101915126	+	10.18236	NA	TTS (NM_014710)	TTS (NM_014710)	8604	NM_001184727	9737	Hs.729265	NM_014710	HPRD:02333	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_67480	chr3	35544615	35544743	+	10.18236	NA	Intergenic	LTR16E1|LTR|ERVL	-109164	NR_110817	101928135	Hs.550715	NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
19-PTNLD28-TUMOR_peak_77444	chr4	146561509	146561626	+	10.18236	NA	intron (NM_172250, intron 2 of 6)	intron (NM_172250, intron 2 of 6)	21027	NM_172250	166785	Hs.452864	NM_172250	HPRD:07394	MMAA	cblA	methylmalonic aciduria (cobalamin deficiency) cblA type	protein-coding
19-PTNLD28-TUMOR_peak_26572	chr12	118472761	118472867	+	10.18236	NA	exon (NM_018639, exon 8 of 9)	exon (NM_018639, exon 8 of 9)	18308	NM_001130112	5985	Hs.731908	NM_007370	HPRD:02677	RFC5	RFC36	replication factor C (activator 1) 5, 36.5kDa	protein-coding
19-PTNLD28-TUMOR_peak_8094	chr1	169420788	169420967	+	10.18236	NA	intron (NM_001300968, intron 2 of 6)	intron (NM_001300968, intron 2 of 6)	9030	NM_001300968	57821	Hs.567557	NM_021179	HPRD:14258	CCDC181	C1orf114	coiled-coil domain containing 181	protein-coding
19-PTNLD28-TUMOR_peak_16237	chr10	129867738	129867838	+	10.18236	NA	intron (NM_130435, intron 9 of 17)	intron (NM_130435, intron 9 of 17)	21975	NM_130435	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_3935	chr1	61673241	61673340	+	10.18236	NA	intron (NM_001145511, intron 2 of 10)	intron (NM_001145511, intron 2 of 10)	45900	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_60927	chr20	36686071	36686170	+	10.18236	NA	intron (NM_021215, intron 4 of 6)	intron (NM_021215, intron 4 of 6)	24172	NM_021215	58490	Hs.278839	NM_021215	HPRD:08513	RPRD1B	C20orf77|CREPT|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_109658	chrX	141426400	141426538	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	-133393	NM_016249	51438	Hs.123536	NM_016249	HPRD:06632	MAGEC2	CT10|HCA587|MAGEE1	melanoma antigen family C, 2	protein-coding
19-PTNLD28-TUMOR_peak_109071	chrX	105855022	105855204	+	10.18236	NA	promoter-TSS (NM_018015)	promoter-TSS (NM_018015)	-47	NM_018015	55086	Hs.274267	NM_018015	HPRD:06513	CXorf57	-	chromosome X open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_21489	chr11	118192430	118192629	+	10.18236	NA	Intergenic	MER57C1|LTR|ERV1	17234	NM_000733	916	Hs.3003	NM_000733	HPRD:08923	CD3E	IMD18|T3E|TCRE	CD3e molecule, epsilon (CD3-TCR complex)	protein-coding
19-PTNLD28-TUMOR_peak_33623	chr15	53833251	53833395	+	10.18236	NA	promoter-TSS (NM_001277176)	promoter-TSS (NM_001277176)	-23	NR_102335	256764	Hs.122125	NM_182758	HPRD:10987	WDR72	AI2A3	WD repeat domain 72	protein-coding
19-PTNLD28-TUMOR_peak_66606	chr3	11376558	11376722	+	10.18236	NA	intron (NM_001144912, intron 8 of 16)	intron (NM_001144912, intron 8 of 16)	62630	NM_001144912	10533	Hs.38032	NM_006395	HPRD:12293	ATG7	APG7-LIKE|APG7L|GSA7	autophagy related 7	protein-coding
19-PTNLD28-TUMOR_peak_33548	chr15	51039219	51039355	+	10.18236	NA	intron (NM_032802, intron 5 of 14)	intron (NM_032802, intron 5 of 14)	18623	NM_032802	84888	Hs.401537	NM_032802	HPRD:09742	SPPL2A	IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
19-PTNLD28-TUMOR_peak_15040	chr10	97777108	97777224	+	10.18236	NA	intron (NM_001001732, intron 6 of 8)	intron (NM_001001732, intron 6 of 8)	17318	NM_001001732	387707	Hs.538374	NM_001001732	HPRD:16578	CC2D2B	C10orf130|bA248J23.4	coiled-coil and C2 domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_28772	chr13	98532235	98532388	+	10.18236	NA	Intergenic	LTR33|LTR|ERVL	-73618	NM_002271	3843	Hs.712598	NM_002271	HPRD:03597	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
19-PTNLD28-TUMOR_peak_83674	chr5	162806702	162806898	+	10.18236	NA	Intergenic	Intergenic	-57777	NM_199246	900	Hs.79101	NM_004060	HPRD:03345	CCNG1	CCNG	cyclin G1	protein-coding
19-PTNLD28-TUMOR_peak_45142	chr18	30315912	30316050	+	10.18236	NA	intron (NM_020805, intron 3 of 8)	intron (NM_020805, intron 3 of 8)	36993	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_73082	chr3	188494364	188494497	+	10.18236	NA	intron (NM_001167671, intron 8 of 10)	intron (NM_001167671, intron 8 of 10)	170998	NR_046873	100874043	Hs.616287	NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45852	chr18	53735450	53735830	+	10.18236	NA	Intergenic	LTR78B|LTR|ERV1	69127	NR_040026	100505474	Hs.662191	NR_040025	ENSG00000267712	LOC100505474	-	uncharacterized LOC100505474	ncRNA
19-PTNLD28-TUMOR_peak_66637	chr3	11845548	11845673	+	10.18236	NA	intron (NM_138807, intron 6 of 6)	intron (NM_138807, intron 6 of 6)	42783	NM_138807	132001	Hs.475472	NM_138807	HPRD:14452	TAMM41	C3orf31|RAM41|TAM41	TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_67253	chr3	26392508	26392624	+	10.18236	NA	Intergenic	L1MEg|LINE|L1	-271734	NM_052953	116135	Hs.517868	NM_052953	HPRD:14318	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_88137	chr6	56769554	56769671	+	10.18236	NA	intron (NM_001144769, intron 2 of 96)	AluSc5|SINE|Alu	49814	NM_001144769	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_96700	chr7	156951200	156951326	+	10.18236	NA	intron (NM_014671, intron 1 of 22)	intron (NM_014671, intron 1 of 22)	19608	NM_014671	9690	Hs.118351	NM_014671	HPRD:15604	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding
19-PTNLD28-TUMOR_peak_107518	chrX	9963967	9964075	+	10.18236	NA	Intergenic	Intergenic	-19774	NM_015691	55841	Hs.527524	NM_015691	HPRD:11136	WWC3	BM042	WWC family member 3	protein-coding
19-PTNLD28-TUMOR_peak_59406	chr20	792832	792944	+	10.18236	NA	Intergenic	LTR5B|LTR|ERVK	-21452	NM_001289145	83541	Hs.574822	NM_031424	HPRD:12775	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110, member A	protein-coding
19-PTNLD28-TUMOR_peak_72361	chr3	171887222	171887409	+	10.18236	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	128971	NM_001135095	64778	Hs.744888	NM_022763	HPRD:10943	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_25385	chr12	76866585	76866918	+	10.18236	NA	intron (NM_020841, intron 2 of 23)	LTR13|LTR|ERVK	86838	NM_020841	114882	Hs.430849	NM_020841	HPRD:09478	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein-like 8	protein-coding
19-PTNLD28-TUMOR_peak_61068	chr20	39100036	39100163	+	10.18236	NA	Intergenic	MER91C|DNA|hAT-Tip100	217781	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_56083	chr2	141101956	141102138	+	10.18236	NA	intron (NM_018557, intron 77 of 90)	L2|LINE|L2	1447153	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_56941	chr2	172221775	172221977	+	10.18236	NA	intron (NM_024770, intron 2 of 9)	LTR14C|LTR|ERVK	-68885	NM_025000	80067	Hs.659439	NM_025000	HPRD:08579	DCAF17	C2orf37	DDB1 and CUL4 associated factor 17	protein-coding
19-PTNLD28-TUMOR_peak_108060	chrX	42838000	42838173	+	10.18236	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-198157	NR_110387	101927501	Hs.495998	NR_110387	ENSG00000224294	LOC101927501	-	uncharacterized LOC101927501	ncRNA
19-PTNLD28-TUMOR_peak_76713	chr4	115580694	115580792	+	10.18236	NA	intron (NM_001128174, intron 2 of 5)	intron (NM_001128174, intron 2 of 5)	2828	NR_030303	693162		NR_030303		MIR577	MIRN577|hsa-mir-577	microRNA 577	ncRNA
19-PTNLD28-TUMOR_peak_31410	chr14	77466774	77466983	+	10.18236	NA	Intergenic	Intergenic	28164	NM_024496	64207	Hs.179260	NM_024496	HPRD:10713	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_38454	chr16	68986387	68986746	+	10.18236	NA	intron (NM_024562, intron 14 of 17)	intron (NM_024562, intron 14 of 17)	109057	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_83089	chr5	148533598	148533737	+	10.18236	NA	intron (NM_001301018, intron 1 of 21)	intron (NM_001301018, intron 1 of 21)	12095	NM_001301018	22885	Hs.49688	NM_014945	HPRD:12411	ABLIM3	-	actin binding LIM protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_62077	chr20	52411836	52411964	+	10.18236	NA	Intergenic	AluJr4|SINE|Alu	80348	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_67583	chr3	38589793	38589932	+	10.18236	NA	3' UTR (NM_001099405, exon 27 of 27)	3' UTR (NM_001099405, exon 27 of 27)	52099	NM_001145464	9941	Hs.517897	NM_005107	HPRD:06813	EXOG	ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding
19-PTNLD28-TUMOR_peak_108133	chrX	46441928	46442041	+	10.18236	NA	intron (NM_019886, intron 1 of 1)	intron (NM_019886, intron 1 of 1)	8862	NM_019886	56548	Hs.129955	NM_019886	HPRD:02302	CHST7	C6ST-2|GST-5	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_15061	chr10	98433694	98433845	+	10.18236	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	46510	NM_152309	118788	Hs.310456	NM_152309	HPRD:06401	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45346	chr18	38477800	38478098	+	10.18236	NA	Intergenic	LTR9B|LTR|ERV1	622612	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
19-PTNLD28-TUMOR_peak_28985	chr13	107678503	107678661	+	10.18236	NA	Intergenic	Intergenic	372354	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_83798	chr5	168972928	168973026	+	10.18236	NA	Intergenic	Intergenic	-37661	NM_017785	54908	Hs.368710	NM_017785	HPRD:08623	SPDL1	CCDC99	spindle apparatus coiled-coil protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45870	chr18	54672082	54672203	+	10.18236	NA	intron (NM_015285, intron 26 of 27)	intron (NM_015285, intron 26 of 27)	67208	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
19-PTNLD28-TUMOR_peak_85235	chr6	9204552	9204652	+	10.18236	NA	Intergenic	Intergenic	552160	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_38786	chr16	75767821	75767991	+	10.18236	NA	Intergenic	MER83A-int|LTR|ERV1	86271	NM_018975	54386	Hs.301419	NM_018975	HPRD:05452	TERF2IP	DRIP5|RAP1	telomeric repeat binding factor 2, interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_109255	chrX	117013382	117013476	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	94272	NM_033495	90293	Hs.348262	NM_033495	HPRD:06461	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
19-PTNLD28-TUMOR_peak_46038	chr18	58645697	58645882	+	10.18236	NA	Intergenic	Intergenic	-511986	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_34655	chr15	77861860	77861973	+	10.18236	NA	Intergenic	MIR3|SINE|MIR	62953	NM_032808	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_93100	chr7	71333936	71334096	+	10.18236	NA	intron (NM_031468, intron 5 of 6)	intron (NM_031468, intron 5 of 6)	468192	NM_001017440	83698	Hs.592750	NM_031468	HPRD:06209	CALN1	CABP8	calneuron 1	protein-coding
19-PTNLD28-TUMOR_peak_53733	chr2	84968485	84968830	+	10.18236	NA	intron (NM_001370, intron 62 of 76)	L1M2a1|LINE|L1	139712	NM_001080824	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_72197	chr3	168185248	168185363	+	10.18236	NA	intron (NR_021485, intron 3 of 15)	intron (NR_021485, intron 3 of 15)	-84337	NR_030294	693136		NR_030294	miRBase:MI0003575	MIR551B	MIRN551B	microRNA 551b	ncRNA
19-PTNLD28-TUMOR_peak_64987	chr22	29550553	29550660	+	10.18236	NA	intron (NM_032045, intron 9 of 9)	intron (NM_032045, intron 9 of 9)	-51295	NM_133455	129080	Hs.289106	NM_133455	HPRD:09936	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58245	chr2	214884073	214884243	+	10.18236	NA	intron (NR_047659, intron 15 of 17)	intron (NR_047659, intron 15 of 17)	-392303	NM_001080500	402117	Hs.534834	NM_001080500		VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_8698	chr1	182657737	182657846	+	10.18236	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-15724	NM_001102450	85397	Hs.20982	NM_033345	HPRD:06221	RGS8	-	regulator of G-protein signaling 8	protein-coding
19-PTNLD28-TUMOR_peak_4175	chr1	67090245	67090367	+	10.18236	NA	intron (NM_032291, intron 1 of 24)	intron (NM_032291, intron 1 of 24)	-3817	NR_036060	100422871		NR_036060		MIR3117	-	microRNA 3117	ncRNA
19-PTNLD28-TUMOR_peak_15742	chr10	115718535	115718735	+	10.18236	NA	Intergenic	Intergenic	-85171	NM_000684	153	Hs.99913	NM_000684	HPRD:00181	ADRB1	ADRB1R|B1AR|BETA1AR|RHR	adrenoceptor beta 1	protein-coding
19-PTNLD28-TUMOR_peak_76645	chr4	113091677	113091795	+	10.18236	NA	intron (NM_152400, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	25183	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_109405	chrX	128727185	128727396	+	10.18236	NA	TTS (NM_000276)	TTS (NM_000276)	53038	NM_000276	4952	Hs.126357	NM_000276	HPRD:02395	OCRL	INPP5F|LOCR|NPHL2|OCRL-1|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding
19-PTNLD28-TUMOR_peak_89736	chr6	142136386	142136550	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	273468	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_19903	chr11	72712794	72712930	+	10.18236	NA	intron (NM_014824, intron 4 of 19)	intron (NM_014824, intron 4 of 19)	140281	NM_014824	9873	Hs.744959	NM_014824	HPRD:13321	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding
19-PTNLD28-TUMOR_peak_4889	chr1	93408856	93409081	+	10.18236	NA	intron (NM_001252273, intron 1 of 4)	intron (NM_001252273, intron 1 of 4)	18111	NM_001252269	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_14884	chr10	93109144	93109381	+	10.18236	NA	intron (NR_024467, intron 4 of 4)	intron (NR_024467, intron 4 of 4)	-60780	NM_001284274	143279	Hs.596096	NM_173497	HPRD:13643	HECTD2	-	HECT domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_4033	chr1	63907434	63907578	+	10.18236	NA	intron (NR_045147, intron 9 of 9)	intron (NR_045147, intron 9 of 9)	74245	NM_013339	29929	Hs.258501	NM_013339	HPRD:05194	ALG6	CDG1C	ALG6, alpha-1,3-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_20380	chr11	84425475	84425682	+	10.18236	NA	intron (NM_001142699, intron 6 of 27)	(TC)n|Simple_repeat|Simple_repeat	208887	NM_001300983	1740	Hs.367656	NM_001364	HPRD:04663	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_93098	chr7	71217187	71217386	+	10.18236	NA	Intergenic	Intergenic	-444530	NR_037477	100500836		NR_037477	miRBase:MI0016419	MIR3914-1	-	microRNA 3914-1	ncRNA
19-PTNLD28-TUMOR_peak_85931	chr6	23697270	23697545	+	10.18236	NA	Intergenic	Intergenic	-429007	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_31497	chr14	80892060	80892188	+	10.18236	NA	intron (NR_038355, intron 8 of 8)	Tigger7|DNA|TcMar-Tigger	-194727	NM_000793	1734	Hs.202354	NM_000793	HPRD:09027	DIO2	5DII|D2|DIOII|SelY|TXDI2	deiodinase, iodothyronine, type II	protein-coding
19-PTNLD28-TUMOR_peak_27532	chr13	25827974	25828148	+	10.18236	NA	exon (NM_004685, exon 11 of 14)	exon (NM_004685, exon 11 of 14)	33643	NM_004685	9107	Hs.643702	NM_004685	HPRD:11946	MTMR6	-	myotubularin related protein 6	protein-coding
19-PTNLD28-TUMOR_peak_110039	chrX	154314881	154314988	+	10.18236	NA	intron (NM_024332, intron 5 of 11)	intron (NM_024332, intron 5 of 11)	15239	NM_001242640	79184	Hs.558537	NM_024332	HPRD:06465	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex, subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_84430	chr5	178082563	178082697	+	10.18236	NA	Intergenic	Intergenic	-28576	NM_020666	57396	Hs.406557	NM_020666	HPRD:12140	CLK4	-	CDC-like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_109583	chrX	135258560	135258784	+	10.18236	NA	intron (NM_001449, intron 2 of 6)	intron (NM_001449, intron 2 of 6)	6876	NM_001167819	2273	Hs.435369	NM_001449	HPRD:02157	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
19-PTNLD28-TUMOR_peak_29945	chr14	36843230	36843483	+	10.18236	NA	Intergenic	Intergenic	-53474	NM_001144891	51562	Hs.368647	NM_016586	HPRD:14368	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49470	chr19	46684804	46684937	+	10.18236	NA	Intergenic	LTR8A|LTR|ERV1	-28629	NR_027003	93429	Hs.569940	NR_027003	ENSG00000268460	DKFZp434J0226	-	uncharacterized LOC93429	ncRNA
19-PTNLD28-TUMOR_peak_94926	chr7	116764864	116764997	+	10.18236	NA	intron (NM_018412, intron 3 of 14)	Tigger12c|DNA|TcMar-Tigger	20716	NR_109981	93654	Hs.628891	NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_22267	chr11	133419902	133420070	+	10.18236	NA	Intergenic	LTR79|LTR|ERVL	-17583	NM_001012393	4978	Hs.4817	NM_002545	HPRD:07198	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
19-PTNLD28-TUMOR_peak_89230	chr6	116853292	116853384	+	10.18236	NA	intron (NM_001256888, intron 1 of 3)	intron (NM_001256888, intron 1 of 3)	3162	NM_001256888	221301	Hs.350750	NM_153036	HPRD:12899	FAM26D	C6orf78	family with sequence similarity 26, member D	protein-coding
19-PTNLD28-TUMOR_peak_75737	chr4	77008424	77008604	+	10.18236	NA	intron (NM_001179, intron 3 of 10)	intron (NM_001179, intron 3 of 10)	12666	NM_001130016	419	Hs.24976	NM_001179	HPRD:04363	ART3	ARTC3	ADP-ribosyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_102080	chr9	5590171	5590280	+	10.18236	NA	Intergenic	Intergenic	-38894	NM_001135920	57589	Hs.211520	NM_020829	HPRD:13858	RIC1	CIP150|KIAA1432|bA207C16.1	RAB6A GEF complex partner 1	protein-coding
19-PTNLD28-TUMOR_peak_96674	chr7	156460966	156461231	+	10.18236	NA	intron (NM_001184997, intron 7 of 8)	intron (NM_001184997, intron 7 of 8)	25427	NM_001184997	140545	Hs.446194	NM_030936	HPRD:11517	RNF32	FKSG33|HSD15|LMBR2	ring finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_13580	chr10	51282076	51282180	+	10.18236	NA	intron (NR_029388, intron 11 of 12)	intron (NR_029388, intron 11 of 12)	89203	NM_003631	8505	Hs.535298	NM_003631		PARG	PARG99	poly (ADP-ribose) glycohydrolase	protein-coding
19-PTNLD28-TUMOR_peak_60131	chr20	21209973	21210106	+	10.18236	NA	intron (NM_018474, intron 10 of 12)	intron (NM_018474, intron 10 of 12)	-11112	NR_109956	101929591	Hs.656066	NR_109956	ENSG00000232712	KIZ-AS1	-	KIZ antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16209	chr10	128148795	128148900	+	10.18236	NA	intron (NM_001004298, intron 5 of 8)	L2c|LINE|L2	-38399	NR_073453	101101772	Hs.562258	NR_073453	ENSG00000235180	LINC00601	-	long intergenic non-protein coding RNA 601	ncRNA
19-PTNLD28-TUMOR_peak_98727	chr8	52741799	52741965	+	10.18236	NA	intron (NM_001286782, intron 3 of 3)	intron (NM_001286782, intron 3 of 3)	-19877	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_28150	chr13	46961509	46961876	+	10.18236	NA	promoter-TSS (NM_025113)	promoter-TSS (NM_025113)	-57	NM_001286766	80183	Hs.98117	NM_025113	HPRD:12615	KIAA0226L	C13orf18	KIAA0226-like	protein-coding
19-PTNLD28-TUMOR_peak_5732	chr1	115916009	115916187	+	10.18236	NA	Intergenic	L2a|LINE|L2	-35241	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_77377	chr4	143880354	143880473	+	10.18236	NA	Intergenic	Intergenic	-112809	NM_001101669	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_38203	chr16	65816945	65817106	+	10.18236	NA	Intergenic	Intergenic	-206822	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	-	long intergenic non-protein coding RNA 922	ncRNA
19-PTNLD28-TUMOR_peak_76572	chr4	110495619	110495731	+	10.18236	NA	intron (NM_017918, intron 1 of 7)	LTR41|LTR|ERVL	14320	NM_017918	55013	Hs.234149	NM_017918		CCDC109B	EMRE|MCUb	coiled-coil domain containing 109B	protein-coding
19-PTNLD28-TUMOR_peak_83836	chr5	169652989	169653247	+	10.18236	NA	Intergenic	Intergenic	-6832	NM_001102609	133874	Hs.519749	NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_107490	chrX	9117177	9117310	+	10.18236	NA	Intergenic	MER5A|DNA|hAT-Charlie	-115075	NM_205849	171483	Hs.733351	NM_173696	HPRD:06566	FAM9B	TEX39B	family with sequence similarity 9, member B	protein-coding
19-PTNLD28-TUMOR_peak_97692	chr8	23508192	23508316	+	10.18236	NA	Intergenic	L1PA2|LINE|L1	32148	NM_001256339	4824	Hs.55999	NM_006167	HPRD:03620	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_52891	chr2	56968767	56968889	+	10.18236	NA	Intergenic	Intergenic	-555923	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_12338	chr10	22215974	22216185	+	10.18236	NA	intron (NM_022365, intron 3 of 11)	intron (NM_022365, intron 3 of 11)	76571	NM_022365	64215	Hs.499000	NM_022365	HPRD:09922	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ (Hsp40) homolog, subfamily C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_36093	chr16	7094132	7094323	+	10.18236	NA	intron (NM_001142334, intron 1 of 13)	intron (NM_001142334, intron 1 of 13)	270417	NM_001142334	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_31603	chr14	89493765	89493923	+	10.18236	NA	Intergenic	CpG	203347	NM_001288782	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
19-PTNLD28-TUMOR_peak_18765	chr11	59448128	59448252	+	10.18236	NA	Intergenic	L1MA6|LINE|L1	-11679	NM_152716	219988	Hs.591960	NM_152716	HPRD:08214	PATL1	Pat1b|hPat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_34422	chr15	73863789	73863949	+	10.18236	NA	intron (NM_017455, intron 4 of 7)	L2c|LINE|L2	-1985	NR_103844	101241892	Hs.656678	NR_103844		NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_27752	chr13	32623155	32623331	+	10.18236	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	-17467	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25408	chr12	78924208	78924492	+	10.18236	NA	Intergenic	Intergenic	-333423	NM_001135805	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
19-PTNLD28-TUMOR_peak_23623	chr12	31359002	31359139	+	10.18236	NA	Intergenic	Intergenic	-118180	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
19-PTNLD28-TUMOR_peak_81526	chr5	111071657	111071779	+	10.18236	NA	intron (NM_001142474, intron 2 of 3)	intron (NM_001142474, intron 2 of 3)	20230	NM_001142483	9315	Hs.36053	NM_004772	HPRD:09545	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
19-PTNLD28-TUMOR_peak_81681	chr5	115367931	115368067	+	10.18236	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-19164	NM_001195581	644100	Hs.98288	NM_001195581		ARL14EPL	-	ADP-ribosylation factor-like 14 effector protein-like	protein-coding
19-PTNLD28-TUMOR_peak_91629	chr7	23610363	23610480	+	10.18236	NA	Intergenic	L1M1|LINE|L1	15725	NR_002711	1197	Hs.632635	NR_002711		CLK2P	-	CDC-like kinase 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_27161	chr12	129454077	129454226	+	10.18236	NA	intron (NM_144669, intron 7 of 7)	intron (NM_144669, intron 7 of 7)	116070	NM_144669	144423	Hs.655668	NM_144669	HPRD:08115	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94878	chr7	113061887	113062026	+	10.18236	NA	Intergenic	Intergenic	-303319	NR_024412	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
19-PTNLD28-TUMOR_peak_28569	chr13	79177704	79177920	+	10.18236	NA	promoter-TSS (NM_006237)	promoter-TSS (NM_006237)	-117	NM_006237	5457	Hs.654522	NM_006237	HPRD:03379	POU4F1	BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_108902	chrX	91025942	91026052	+	10.18236	NA	Intergenic	Intergenic	-64463	NM_001168363	27328	Hs.655673	NM_014522	HPRD:02215	PCDH11X	PCDH-X|PCDH11|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
19-PTNLD28-TUMOR_peak_73071	chr3	188080383	188080494	+	10.18236	NA	intron (NM_001167671, intron 2 of 10)	intron (NM_001167671, intron 2 of 10)	137245	NM_001167671	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_25727	chr12	97536889	97537163	+	10.18236	NA	Intergenic	Intergenic	235782	NM_001135175	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_88243	chr6	71394654	71394802	+	10.18236	NA	intron (NM_001281440, intron 1 of 10)	MIRb|SINE|MIR	16495	NM_001281440	60682	Hs.485717	NM_021940	HPRD:18072	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
19-PTNLD28-TUMOR_peak_15992	chr10	122918523	122918707	+	10.18236	NA	Intergenic	Intergenic	-307924	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74970	chr4	38593364	38593533	+	10.18236	NA	Intergenic	Intergenic	-68647	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_42888	chr17	62501535	62501695	+	10.18139	NA	intron (NM_004396, intron 1 of 12)	CpG	869	NM_004396	1655	Hs.279806	NM_004396	HPRD:01615	DDX5	G17P1|HLR1|HUMP68|p68	DEAD (Asp-Glu-Ala-Asp) box helicase 5	protein-coding
19-PTNLD28-TUMOR_peak_7062	chr1	154380070	154380346	+	10.17808	NA	intron (NM_181359, intron 1 of 8)	intron (NM_181359, intron 1 of 8)	2539	NM_181359	3570	Hs.135087	NM_000565	HPRD:01000	IL6R	CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
19-PTNLD28-TUMOR_peak_35286	chr15	92508746	92508906	+	10.17771	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	111888	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_64839	chr22	25801249	25801457	+	10.17771	NA	Intergenic	CpG	-23809	NM_001135772	91355	Hs.634058	NM_182492	HPRD:13200	LRP5L	-	low density lipoprotein receptor-related protein 5-like	protein-coding
19-PTNLD28-TUMOR_peak_101745	chr8	145515598	145516070	+	10.17771	NA	promoter-TSS (NM_015201)	promoter-TSS (NM_015201)	564	NM_005526	3297	Hs.530227	NM_005526	HPRD:00778	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_104345	chr9	89953522	89953792	+	10.17740	NA	Intergenic	MER41D|LTR|ERV1	-158486	NM_001288731	1612	Hs.380277	NM_004938	HPRD:02902	DAPK1	DAPK	death-associated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_53750	chr2	85197495	85197953	+	10.17740	NA	promoter-TSS (NM_020122)	promoter-TSS (NM_020122)	-507	NM_020122	56888	Hs.654968	NM_020122	HPRD:13761	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_93512	chr7	76180387	76180479	+	10.17740	NA	intron (NR_029411, intron 1 of 2)	AluSz6|SINE|Alu	1775	NR_029411	100133091	Hs.712837	NR_029411	ENSG00000205485	LOC100133091	-	uncharacterized LOC100133091	ncRNA
19-PTNLD28-TUMOR_peak_2030	chr1	31885766	31885996	+	10.17634	NA	promoter-TSS (NM_178865)	promoter-TSS (NM_178865)	-82	NM_178865	347735	Hs.270655	NM_018565	HPRD:15481	SERINC2	PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
19-PTNLD28-TUMOR_peak_48052	chr19	18451174	18451590	+	10.17634	NA	promoter-TSS (NM_017712)	promoter-TSS (NM_017712)	-15	NM_001300927	54858	Hs.131776	NM_017712	HPRD:07141	PGPEP1	PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
19-PTNLD28-TUMOR_peak_54982	chr2	112641284	112641600	+	10.17634	NA	intron (NM_022662, intron 1 of 47)	CpG	299	NM_022662	64682	Hs.436527	NM_022662	HPRD:09769	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_93157	chr7	72713882	72714068	+	10.17634	NA	Intergenic	Intergenic	8889	NM_018044	55695	Hs.510927	NM_018044	HPRD:11678	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120	NOP2/Sun domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_32355	chr14	105881369	105881672	+	10.17634	NA	Intergenic	CpG	4556	NR_125384	100507437	Hs.676548	NR_125384		LOC100507437	-	uncharacterized LOC100507437	ncRNA
19-PTNLD28-TUMOR_peak_58676	chr2	227525363	227525511	+	10.17634	NA	Intergenic	L2b|LINE|L2	-1928	NR_049887	100847053		NR_049887	miRBase:MI0019309	MIR5702	-	microRNA 5702	ncRNA
19-PTNLD28-TUMOR_peak_83182	chr5	149682053	149682277	+	10.17634	NA	5' UTR (NM_001012301, exon 1 of 2)	5' UTR (NM_001012301, exon 1 of 2)	360	NM_001012301	340075	Hs.591252	NM_001012301	HPRD:16510	ARSI	SPG66	arylsulfatase family, member I	protein-coding
19-PTNLD28-TUMOR_peak_30579	chr14	59656756	59656878	+	10.17549	NA	intron (NM_001270520, intron 1 of 24)	intron (NM_001270520, intron 1 of 24)	1436	NM_001270520	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_37227	chr16	30379861	30379974	+	10.17312	NA	intron (NM_015527, intron 1 of 8)	intron (NM_015527, intron 1 of 8)	1605	NM_015527	26000	Hs.632182	NM_015527	HPRD:10892	TBC1D10B	EPI64B	TBC1 domain family, member 10B	protein-coding
19-PTNLD28-TUMOR_peak_2789	chr1	41363341	41363504	+	10.17184	NA	Intergenic	MIR3|SINE|MIR	-35404	NM_133467	163732	Hs.355820	NM_133467	HPRD:06011	CITED4	-	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding
19-PTNLD28-TUMOR_peak_100484	chr8	123795145	123795382	+	10.17096	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	1362	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_6992	chr1	153620813	153620996	+	10.17096	NA	Intergenic	AluSc5|SINE|Alu	-10226	NM_012437	23557	Hs.32018	NM_012437	HPRD:06111	SNAPIN	BLOC1S7|BLOS7|SNAPAP	SNAP-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_14816	chr10	90749566	90749974	+	10.17096	NA	promoter-TSS (NM_152871)	promoter-TSS (NM_152871)	-518	NR_028036	355	Hs.244139	NM_000043	HPRD:00609	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
19-PTNLD28-TUMOR_peak_49717	chr19	49057713	49058069	+	10.17096	NA	intron (NM_177973, intron 1 of 6)	intron (NM_177973, intron 1 of 6)	2462	NM_177973	6820	Hs.369331	NM_004605	HPRD:04991	SULT2B1	HSST2	sulfotransferase family, cytosolic, 2B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_44135	chr17	80693397	80693596	+	10.16713	NA	promoter-TSS (NM_022158)	promoter-TSS (NM_022158)	44	NM_022158	64122	Hs.151135	NM_022158	HPRD:16336	FN3K	-	fructosamine 3 kinase	protein-coding
19-PTNLD28-TUMOR_peak_25973	chr12	105705816	105705948	+	10.16713	NA	Intergenic	HERVK11-int|LTR|ERVK	-18532	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_68622	chr3	58608324	58608438	+	10.16713	NA	intron (NM_001282714, intron 1 of 4)	intron (NM_001282714, intron 1 of 4)	4956	NM_001282714	11170	Hs.506357	NM_007177	HPRD:09753	FAM107A	DRR1|TU3A	family with sequence similarity 107, member A	protein-coding
19-PTNLD28-TUMOR_peak_90646	chr6	170122725	170123018	+	10.16713	NA	intron (NM_018288, intron 1 of 11)	intron (NM_018288, intron 1 of 11)	1235	NM_018288	55274	Hs.435933	NM_018288	HPRD:11428	PHF10	BAF45A|XAP135	PHD finger protein 10	protein-coding
19-PTNLD28-TUMOR_peak_33969	chr15	64539066	64539239	+	10.16713	NA	intron (NM_022048, intron 4 of 11)	intron (NM_022048, intron 4 of 11)	-83798	NM_000942	5479	Hs.434937	NM_000942	HPRD:00458	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B (cyclophilin B)	protein-coding
19-PTNLD28-TUMOR_peak_87967	chr6	52622882	52623070	+	10.16713	NA	intron (NM_000846, intron 1 of 6)	intron (NM_000846, intron 1 of 6)	5385	NM_000846	2939	Hs.94107	NM_000846	HPRD:00709	GSTA2	GST2|GSTA2-2|GTA2|GTH2	glutathione S-transferase alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_12611	chr10	28699453	28699569	+	10.16713	NA	Intergenic	L2c|LINE|L2	-121232	NR_107053	102465880		NR_107053		MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
19-PTNLD28-TUMOR_peak_93286	chr7	73808983	73809107	+	10.16713	NA	intron (NM_003388, intron 13 of 16)	intron (NM_003388, intron 13 of 16)	-59075	NM_005685	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33614	chr15	52820791	52821162	+	10.16713	NA	intron (NM_001142495, intron 1 of 39)	CpG	271	NM_001142495	4644	Hs.21213	NM_000259	HPRD:01179	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA (heavy chain 12, myoxin)	protein-coding
19-PTNLD28-TUMOR_peak_103387	chr9	47258023	47258141	+	10.16713	NA	Intergenic	MIR|SINE|MIR	494291	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_172	chr1	1617811	1618022	+	10.16713	NA	intron (NM_001110781, intron 1 of 8)	(TAAAAA)n|Simple_repeat|Simple_repeat	6327	NM_001290264	728661	Hs.655255	NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35, member E2B	protein-coding
19-PTNLD28-TUMOR_peak_39132	chr16	84986482	84986632	+	10.16713	NA	Intergenic	Intergenic	58584	NM_017740	55625	Hs.461610	NM_017740	HPRD:15722	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger, DHHC-type containing 7	protein-coding
19-PTNLD28-TUMOR_peak_54677	chr2	106132122	106132472	+	10.16713	NA	Intergenic	Intergenic	-77067	NM_201557	2274	Hs.443687	NM_001450	HPRD:04026	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
19-PTNLD28-TUMOR_peak_57675	chr2	198712562	198712692	+	10.16713	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	43201	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C-like 1	protein-coding
19-PTNLD28-TUMOR_peak_69047	chr3	72936011	72936228	+	10.16713	NA	Intergenic	Intergenic	-1266	NM_001080393	727936	Hs.710275	NM_001080393		GXYLT2	GLT8D4	glucoside xylosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_37001	chr16	27992559	27992854	+	10.16713	NA	intron (NM_001109763, intron 1 of 6)	intron (NM_001109763, intron 1 of 6)	82124	NM_001109763	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_90013	chr6	151083053	151083201	+	10.16713	NA	intron (NM_001029884, intron 3 of 16)	intron (NM_001029884, intron 3 of 16)	-103688	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_86172	chr6	26577342	26577454	+	10.16591	NA	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-19773	NM_013375	29777	Hs.254406	NM_013375	HPRD:16469	ABT1	hABT1	activator of basal transcription 1	protein-coding
19-PTNLD28-TUMOR_peak_38041	chr16	57417892	57418014	+	10.16591	NA	3' UTR (NM_002996, exon 3 of 3)	3' UTR (NM_002996, exon 3 of 3)	11539	NM_002996	6376	Hs.531668	NM_002996	HPRD:03529	CX3CL1	ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin	chemokine (C-X3-C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_94048	chr7	95704872	95705084	+	10.16591	NA	intron (NM_001278421, intron 13 of 15)	intron (NM_001278421, intron 13 of 15)	144090	NR_030322	693176		NR_030322		MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
19-PTNLD28-TUMOR_peak_108140	chrX	46618768	46619021	+	10.16591	NA	promoter-TSS (NM_032591)	promoter-TSS (NM_032591)	-287	NM_001257291	84679	Hs.91389	NM_032591		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
19-PTNLD28-TUMOR_peak_21565	chr11	119076563	119076706	+	10.16591	NA	promoter-TSS (NM_005188)	promoter-TSS (NM_005188)	-352	NM_005188	867	Hs.504096	NM_005188	HPRD:01320	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_55750	chr2	131981435	131981576	+	10.16591	NA	exon (NM_001083538, exon 3 of 15)	exon (NM_001083538, exon 3 of 15)	5581	NM_001083538	445582	Hs.686146	NM_001004054	HPRD:12329	POTEE	A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma	POTE ankyrin domain family, member E	protein-coding
19-PTNLD28-TUMOR_peak_37845	chr16	53463164	53463455	+	10.16591	NA	Intergenic	LTR8|LTR|ERV1	-5042	NM_005611	5934	Hs.513609	NM_005611	HPRD:01576	RBL2	P130|Rb2	retinoblastoma-like 2	protein-coding
19-PTNLD28-TUMOR_peak_15254	chr10	102778841	102778992	+	10.16591	NA	exon (NM_001195263, exon 8 of 17)	exon (NM_001195263, exon 8 of 17)	11998	NM_024895	79955	Hs.438245	NM_024895	HPRD:15114	PDZD7	PDZK7	PDZ domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_38723	chr16	75045556	75045671	+	10.16591	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	12698	NM_032268	84937	Hs.427284	NM_032268	HPRD:15893	ZNRF1	NIN283	zinc and ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_42742	chr17	59940411	59940744	+	10.16535	NA	intron (NM_032043, intron 1 of 19)	intron (NM_032043, intron 1 of 19)	343	NM_032043	83990	Hs.128903	NM_032043		BRIP1	BACH1|FANCJ|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding
19-PTNLD28-TUMOR_peak_43222	chr17	70511139	70511405	+	10.16535	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	77671	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_48389	chr19	29495037	29495194	+	10.16535	NA	non-coding (NR_040036, exon 3 of 5)	non-coding (NR_040036, exon 3 of 5)	1653	NR_040036	100505835	Hs.176539	NR_040036	ENSG00000267014	LOC100505835	-	uncharacterized LOC100505835	ncRNA
19-PTNLD28-TUMOR_peak_38971	chr16	81474842	81475027	+	10.16535	NA	Intergenic	Intergenic	-3841	NM_198390	80790	Hs.594095	NM_030629	HPRD:10839	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_93466	chr7	75852400	75852549	+	10.16535	NA	intron (NM_001291831, intron 1 of 15)	intron (NM_001291831, intron 1 of 15)	21263	NM_001291831	222183	Hs.511025	NM_001039212	HPRD:08219	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
19-PTNLD28-TUMOR_peak_90803	chr7	1105491	1105618	+	10.15942	NA	intron (NM_001134395, intron 2 of 4)	CpG	8413	NM_138445	115330	Hs.585007	NM_138445	HPRD:17064	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
19-PTNLD28-TUMOR_peak_109434	chrX	129239347	129239547	+	10.15942	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	5028	NM_001421	2000	Hs.271940	NM_001421	HPRD:06499	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_49443	chr19	46302390	46302766	+	10.15942	NA	intron (NM_030785, intron 5 of 5)	intron (NM_030785, intron 5 of 5)	-6518	NM_004943	1762	Hs.515474	NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	dystrophia myotonica, WD repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_2965	chr1	43602148	43602348	+	10.15942	NA	Intergenic	Intergenic	-11346	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	family with sequence similarity 183, member A	protein-coding
19-PTNLD28-TUMOR_peak_3194	chr1	46420306	46420467	+	10.15600	NA	intron (NM_015112, intron 4 of 28)	intron (NM_015112, intron 4 of 28)	151101	NM_015112	23139	Hs.319481	NM_015112	HPRD:11294	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_55244	chr2	119542492	119542811	+	10.15600	NA	Intergenic	MER117|DNA|hAT-Charlie	63108	NM_001426	2019	Hs.271977	NM_001426	HPRD:08835	EN1	-	engrailed homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_102215	chr9	14018172	14018315	+	10.15600	NA	Intergenic	Intergenic	90273	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
19-PTNLD28-TUMOR_peak_51261	chr2	15777534	15777701	+	10.15600	NA	Intergenic	Intergenic	45872	NM_004939	1653	Hs.440599	NM_004939	HPRD:03158	DDX1	DBP-RB|UKVH5d	DEAD (Asp-Glu-Ala-Asp) box helicase 1	protein-coding
19-PTNLD28-TUMOR_peak_24454	chr12	53584019	53584135	+	10.15600	NA	3' UTR (NM_001004304, exon 7 of 7)	3' UTR (NM_001004304, exon 7 of 7)	-9384	NM_001244705	51380	Hs.279815	NM_015989	HPRD:16763	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_58920	chr2	234395728	234396075	+	10.15600	NA	intron (NM_018218, intron 27 of 30)	L1M5|LINE|L1	78335	NM_018218	55230	Hs.96513	NM_018218	HPRD:07166	USP40	-	ubiquitin specific peptidase 40	protein-coding
19-PTNLD28-TUMOR_peak_22962	chr12	8862226	8862336	+	10.15600	NA	intron (NM_020734, intron 1 of 5)	MER44A|DNA|TcMar-Tigger	9900	NM_020734	57494	Hs.504670	NM_020734	HPRD:13844	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
19-PTNLD28-TUMOR_peak_105184	chr9	110014394	110014514	+	10.15600	NA	Intergenic	Intergenic	-31063	NM_002874	5887	Hs.521640	NM_002874	HPRD:06772	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_74969	chr4	38576666	38576836	+	10.15600	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-51950	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_103571	chr9	69551590	69551746	+	10.15600	NA	Intergenic	Intergenic	-99693	NR_024443	100133920	Hs.645503	NR_024443		LOC100133920	-	uncharacterized LOC100133920	ncRNA
19-PTNLD28-TUMOR_peak_64727	chr22	24349535	24349714	+	10.15600	NA	Intergenic	tRNA-Gln-CAA_|tRNA|tRNA	-2366	NR_003081	25774	Hs.652490	NM_015371		GSTTP1	GSTT4|HS322B1A	glutathione S-transferase theta pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_58462	chr2	219894402	219894790	+	10.15600	NA	intron (NM_194302, intron 10 of 34)	intron (NM_194302, intron 10 of 34)	11677	NM_152389	255101	Hs.147762	NM_152389	HPRD:13201	CCDC108	-	coiled-coil domain containing 108	protein-coding
19-PTNLD28-TUMOR_peak_45012	chr18	24371760	24371934	+	10.15600	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	70728	NM_004028	361	Hs.315369	NM_001650	HPRD:02631	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
19-PTNLD28-TUMOR_peak_109364	chrX	122967343	122967455	+	10.15600	NA	Intergenic	Intergenic	-26263	NM_001204401	331	Hs.356076	NM_001167	HPRD:02094	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
19-PTNLD28-TUMOR_peak_103953	chr9	79015566	79015683	+	10.15600	NA	TTS (NR_026890)	TTS (NR_026890)	2109	NR_026890	653162	Hs.655646	NR_026890	ENSG00000234618	RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_4774	chr1	90018279	90018517	+	10.15600	NA	intron (NM_001134476, intron 3 of 7)	intron (NM_001134476, intron 3 of 7)	-5874	NM_015350	23507	Hs.482017	NM_015350	HPRD:18145	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_89228	chr6	116832669	116832845	+	10.15600	NA	promoter-TSS (NM_153711)	promoter-TSS (NM_153711)	-51	NM_153711	254228	Hs.660142	NM_153711		FAM26E	C6orf188|dJ493F7.3	family with sequence similarity 26, member E	protein-coding
19-PTNLD28-TUMOR_peak_107315	chrUn_gl000242	10989	11139	+	10.15600	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_107712	chrX	19065017	19065294	+	10.15600	NA	intron (NM_001079859, intron 3 of 27)	intron (NM_001079859, intron 3 of 27)	-62675	NM_000292	5256	Hs.54941	NM_000292	HPRD:02380	PHKA2	GSD9A|PHK|PYK|PYKL|XLG|XLG2	phosphorylase kinase, alpha 2 (liver)	protein-coding
19-PTNLD28-TUMOR_peak_56168	chr2	147163780	147163904	+	10.15600	NA	Intergenic	L1PA2|LINE|L1	-180783	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_108470	chrX	57189785	57189923	+	10.15600	NA	Intergenic	L1PA4|LINE|L1	-25796	NM_019003	54466	Hs.460725	NM_019003	HPRD:06725	SPIN2A	DXF34|SPIN2|dJ323P24.1	spindlin family, member 2A	protein-coding
19-PTNLD28-TUMOR_peak_43197	chr17	70106592	70107003	+	10.15600	NA	intron (NR_103738, intron 2 of 6)	intron (NR_103738, intron 2 of 6)	5360	NR_103738	400618	Hs.657374	NR_103737	ENSG00000234899	SOX9-AS1	-	SOX9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42524	chr17	55979640	55979760	+	10.15320	NA	intron (NM_001271875, intron 1 of 10)	AluSx|SINE|Alu	1050	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73801	chr4	1107395	1107566	+	10.15241	NA	promoter-TSS (NM_001193318)	promoter-TSS (NM_001193318)	-128	NM_001131034	285498	Hs.248290	NM_194439	HPRD:14158	RNF212	ZHP3	ring finger protein 212	protein-coding
19-PTNLD28-TUMOR_peak_75784	chr4	77610405	77610833	+	10.14627	NA	intron (NM_020859, intron 2 of 10)	CpG	115898	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_68614	chr3	58550610	58550812	+	10.14627	NA	3' UTR (NM_007177, exon 5 of 5)	3' UTR (NM_007177, exon 5 of 5)	12780	NM_001076778	11170	Hs.506357	NM_007177	HPRD:09753	FAM107A	DRR1|TU3A	family with sequence similarity 107, member A	protein-coding
19-PTNLD28-TUMOR_peak_34968	chr15	85053484	85053688	+	10.14627	NA	non-coding (NR_003246, exon 11 of 12)	non-coding (NR_003246, exon 11 of 12)	6492	NR_003246	374650	Hs.454625	NM_198079		GOLGA6L5P	GOLGA6L5|GOLGA6L8	golgin A6 family-like 5, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_48502	chr19	32836369	32836488	+	10.14182	NA	promoter-TSS (NM_014910)	promoter-TSS (NM_014910)	-86	NM_014910	22847	Hs.205392	NM_014910	HPRD:11722	ZNF507	-	zinc finger protein 507	protein-coding
19-PTNLD28-TUMOR_peak_87221	chr6	37616456	37617103	+	10.14182	NA	exon (NM_153487, exon 9 of 17)	exon (NM_153487, exon 9 of 17)	48987	NM_153487	266727	Hs.437993	NM_153487	HPRD:14374	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
19-PTNLD28-TUMOR_peak_93872	chr7	90234459	90234628	+	10.14182	NA	intron (NM_001287135, intron 2 of 14)	intron (NM_001287135, intron 2 of 14)	8867	NM_001287135	5218	Hs.258576	NM_012395	HPRD:15121	CDK14	PFTAIRE1|PFTK1	cyclin-dependent kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_2031	chr1	31886363	31886648	+	10.14182	NA	promoter-TSS (NM_018565)	promoter-TSS (NM_018565)	-155	NM_001199039	347735	Hs.270655	NM_018565	HPRD:15481	SERINC2	PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
19-PTNLD28-TUMOR_peak_42009	chr17	46035084	46035290	+	10.14182	NA	promoter-TSS (NM_024320)	promoter-TSS (NM_024320)	56	NM_024320	79170	Hs.368260	NM_024320	HPRD:14412	PRR15L	ATAD4	proline rich 15-like	protein-coding
19-PTNLD28-TUMOR_peak_30675	chr14	62036595	62036837	+	10.13956	NA	promoter-TSS (NR_039985)	promoter-TSS (NR_039985)	196	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_61408	chr20	44835664	44835797	+	10.13956	NA	intron (NM_021248, intron 7 of 11)	L2b|LINE|L2	88824	NM_152854	958	Hs.472860	NM_001250	HPRD:00178	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule, TNF receptor superfamily member 5	protein-coding
19-PTNLD28-TUMOR_peak_46699	chr19	3036315	3036458	+	10.13956	NA	intron (NM_001144761, intron 2 of 19)	CpG	-6774	NM_001144762	7089	Hs.332173	NM_003260	HPRD:03025	TLE2	ESG|ESG2|GRG2	transducin-like enhancer of split 2	protein-coding
19-PTNLD28-TUMOR_peak_65164	chr22	32056969	32057080	+	10.13956	NA	Intergenic	Intergenic	-30214	NM_014338	23761	Hs.420559	NM_014338	HPRD:17854	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_54107	chr2	91911401	91911529	+	10.13956	NA	Intergenic	Intergenic	-51903	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10063	chr1	216774173	216774761	+	10.13894	NA	intron (NM_001243505, intron 3 of 6)	CpG	122347	NM_001243519	2104	Hs.444225	NM_001438	HPRD:04274	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
19-PTNLD28-TUMOR_peak_25781	chr12	99594873	99595127	+	10.13894	NA	intron (NM_152788, intron 14 of 25)	intron (NM_152788, intron 14 of 25)	-46132	NM_001204067	56899	Hs.506458	NM_020140	HPRD:07426	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_11498	chr1	246852956	246853178	+	10.13894	NA	Intergenic	LTR41|LTR|ERVL	-34311	NM_016002	51097	Hs.498397	NM_016002	HPRD:13038	SCCPDH	NET11	saccharopine dehydrogenase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_29072	chr13	111159579	111159837	+	10.13894	NA	intron (NM_001846, intron 46 of 47)	L4|LINE|RTE	818	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83553	chr5	158758473	158758929	+	10.13894	NA	non-coding (NR_037889, exon 1 of 5)	non-coding (NR_037889, exon 1 of 5)	175	NR_037889	285626	Hs.449275	NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
19-PTNLD28-TUMOR_peak_27326	chr13	19202465	19202599	+	10.13894	NA	Intergenic	CpG	111707	NR_047508	100874164	Hs.739604	NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
19-PTNLD28-TUMOR_peak_53714	chr2	84452298	84452484	+	10.13894	NA	Intergenic	L1PA3|LINE|L1	-65415	NR_003663	388965	Hs.664098	NM_001013648	HPRD:18390	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_99670	chr8	99738300	99738478	+	10.13894	NA	intron (NM_001256312, intron 6 of 12)	intron (NM_001256312, intron 6 of 12)	99510	NM_001256313	6788	Hs.492333	NM_006281	HPRD:05433	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_27234	chr12	131972390	131972582	+	10.13894	NA	Intergenic	Intergenic	140471	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_99193	chr8	73793944	73794069	+	10.13894	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	-127091	NM_017489	7013	Hs.442707	NM_003218	HPRD:02975	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor (NIMA-interacting) 1	protein-coding
19-PTNLD28-TUMOR_peak_6571	chr1	149058205	149058372	+	10.13894	NA	intron (NR_104217, intron 2 of 17)	L1PA2|LINE|L1	51437	NR_104217	101929780	Hs.534675	NR_104217		NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family, member 25, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_67551	chr3	38016204	38016372	+	10.13894	NA	intron (NM_001008392, intron 6 of 7)	intron (NM_001008392, intron 6 of 7)	5393	NR_029499	407015		NR_029499		MIR26A1	MIR26A|MIRN26A1	microRNA 26a-1	ncRNA
19-PTNLD28-TUMOR_peak_24589	chr12	54997126	54997274	+	10.13894	NA	Intergenic	Intergenic	7046	NR_003039	644076	Hs.483519	NR_003039	ENSG00000257780	GLYCAM1	-	glycosylation dependent cell adhesion molecule 1 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_12079	chr10	13035693	13035935	+	10.13894	NA	intron (NM_001282658, intron 6 of 6)	intron (NM_001282658, intron 6 of 6)	7890	NM_031455	83643	Hs.498720	NM_031455	HPRD:13008	CCDC3	-	coiled-coil domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_32194	chr14	103652185	103652281	+	10.13894	NA	Intergenic	MER65-int|LTR|ERV1	3132	NR_033938	100131366	Hs.147881	NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
19-PTNLD28-TUMOR_peak_33872	chr15	62788331	62788474	+	10.13894	NA	Intergenic	Intergenic	148978	NR_026897	197003	Hs.352253	NM_152648	ENSG00000259458	MGC15885	-	uncharacterized protein MGC15885	ncRNA
19-PTNLD28-TUMOR_peak_14850	chr10	91313102	91313426	+	10.13894	NA	Intergenic	Intergenic	-17951	NM_213606	387700	Hs.530338	NM_213606	HPRD:17365	SLC16A12	CJMG|MCT12	solute carrier family 16, member 12	protein-coding
19-PTNLD28-TUMOR_peak_93076	chr7	70214058	70214249	+	10.13894	NA	intron (NM_001127231, intron 6 of 17)	intron (NM_001127231, intron 6 of 17)	-383370	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_56935	chr2	172023197	172023305	+	10.13894	NA	intron (NM_001136554, intron 1 of 20)	L1ME3B|LINE|L1	-5841	NM_012290	9874	Hs.744917	NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86268	chr6	27804865	27805055	+	10.13894	NA	TTS (NM_003510)	TTS (NM_003510)	1157	NM_003510	8330	Hs.734717	NM_003510	HPRD:09100	HIST1H2AK	H2A/d|H2AFD	histone cluster 1, H2ak	protein-coding
19-PTNLD28-TUMOR_peak_5075	chr1	96712075	96712228	+	10.13894	NA	Intergenic	L1PA3|LINE|L1	127530	NR_110693	101928241	Hs.514137	NR_110693	ENSG00000231987	LOC101928241	-	uncharacterized LOC101928241	ncRNA
19-PTNLD28-TUMOR_peak_67846	chr3	45180593	45180687	+	10.13894	NA	intron (NM_022842, intron 1 of 8)	MSTB1|LTR|ERVL-MaLR	7274	NM_022842	64866	Hs.476093	NM_022842	HPRD:16696	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45032	chr18	25323475	25323592	+	10.13894	NA	Intergenic	L1PA2|LINE|L1	433912	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_65778	chr22	43176219	43176341	+	10.13894	NA	Intergenic	Intergenic	-59404	NM_017436	53947	Hs.105956	NM_017436	HPRD:06390	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_52936	chr2	60524904	60525117	+	10.13894	NA	Intergenic	Intergenic	89570	NR_039631	100616473		NR_039631	miRBase:MI0016772	MIR4432	-	microRNA 4432	ncRNA
19-PTNLD28-TUMOR_peak_104100	chr9	84173411	84173673	+	10.13624	NA	Intergenic	Intergenic	130054	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_15350	chr10	104211150	104211351	+	10.13624	NA	promoter-TSS (NM_024886)	promoter-TSS (NM_024886)	50	NM_024886	79946	Hs.225084	NM_024886	HPRD:10701	C10orf95	-	chromosome 10 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_51333	chr2	16920244	16920405	+	10.13624	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-73190	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_15946	chr10	121302676	121302829	+	10.13624	NA	promoter-TSS (NM_001005339)	promoter-TSS (NM_001005339)	-530	NM_001005339	6001	Hs.501200	NM_002925	HPRD:04172	RGS10	-	regulator of G-protein signaling 10	protein-coding
19-PTNLD28-TUMOR_peak_88703	chr6	89855276	89855525	+	10.13375	NA	promoter-TSS (NM_001010853)	promoter-TSS (NM_001010853)	-369	NM_001010853	135293	Hs.356247	NM_001010853	HPRD:16473	PM20D2	ACY1L2|bA63L7.3	peptidase M20 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_53940	chr2	87644126	87644240	+	10.13252	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	-110791	NR_024204	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
19-PTNLD28-TUMOR_peak_85505	chr6	13614865	13615039	+	10.12671	NA	promoter-TSS (NM_016167)	promoter-TSS (NM_016167)	-607	NM_016167	51406	Hs.306242	NM_016167		NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7, 27kDa	protein-coding
19-PTNLD28-TUMOR_peak_88611	chr6	86351681	86351818	+	10.12545	NA	promoter-TSS (NM_001159676)	promoter-TSS (NM_001159676)	-580	NM_001159676	10492	Hs.571177	NM_006372	HPRD:06734	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_34474	chr15	74508414	74508547	+	10.12500	NA	Intergenic	Intergenic	-6434	NM_001199040	64220	Hs.24553	NM_022369	HPRD:18122	STRA6	MCOPCB8|MCOPS9	stimulated by retinoic acid 6	protein-coding
19-PTNLD28-TUMOR_peak_109480	chrX	131351332	131351562	+	10.12500	NA	5' UTR (NM_001271186, exon 4 of 6)	5' UTR (NM_001271186, exon 4 of 6)	742	NM_021183	57826	Hs.119889	NM_021183	HPRD:06706	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_105904	chr9	124449265	124449420	+	10.12500	NA	intron (NM_032552, intron 2 of 16)	intron (NM_032552, intron 2 of 16)	-55722	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_84918	chr6	3712126	3712245	+	10.12500	NA	Intergenic	Intergenic	40061	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61783	chr20	48871748	48871882	+	10.12500	NA	Intergenic	L1MC3|LINE|L1	-12208	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
19-PTNLD28-TUMOR_peak_52414	chr2	43465946	43466200	+	10.12500	NA	intron (NM_022065, intron 36 of 37)	intron (NM_022065, intron 36 of 37)	11723	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_57487	chr2	191714476	191714828	+	10.12500	NA	Intergenic	MIR|SINE|MIR	-30895	NM_001256310	2744	Hs.116448	NM_014905	HPRD:00700	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
19-PTNLD28-TUMOR_peak_106456	chr9	133741905	133742081	+	10.12500	NA	intron (NM_005157, intron 4 of 10)	intron (NM_005157, intron 4 of 10)	27232	NM_198180	347148	Hs.660704	NM_198180	HPRD:17813	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
19-PTNLD28-TUMOR_peak_33303	chr15	42840623	42840756	+	10.12500	NA	promoter-TSS (NM_001130447)	promoter-TSS (NM_001130447)	313	NM_153260	255252	Hs.234681	NM_153260	HPRD:08212	LRRC57	-	leucine rich repeat containing 57	protein-coding
19-PTNLD28-TUMOR_peak_85609	chr6	15727686	15727880	+	10.12500	NA	Intergenic	Intergenic	-64494	NM_001271669	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_96560	chr7	153769083	153769207	+	10.12500	NA	intron (NM_001290253, intron 1 of 5)	intron (NM_001290253, intron 1 of 5)	19642	NM_001290253	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_22507	chr12	3000443	3000565	+	10.12391	NA	intron (NM_001160408, intron 1 of 11)	CpG	471	NM_003324	7289	Hs.655333	NM_003324	HPRD:05292	TULP3	TUBL3	tubby like protein 3	protein-coding
19-PTNLD28-TUMOR_peak_41582	chr17	41132336	41132632	+	10.12146	NA	promoter-TSS (NM_001142654)	promoter-TSS (NM_001142654)	61	NM_001142654	100885848	Hs.317403	NM_001142653	ENSG00000267060	PTGES3L	-	prostaglandin E synthase 3 (cytosolic)-like	protein-coding
19-PTNLD28-TUMOR_peak_84838	chr6	2971394	2972080	+	10.12146	NA	promoter-TSS (NM_001271822)	promoter-TSS (NM_001271822)	-194	NM_001271822	5269	Hs.519523	NM_004568	HPRD:01413	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin peptidase inhibitor, clade B (ovalbumin), member 6	protein-coding
19-PTNLD28-TUMOR_peak_57332	chr2	183731017	183731597	+	10.12146	NA	5' UTR (NM_001463, exon 1 of 6)	5' UTR (NM_001463, exon 1 of 6)	191	NM_001463	2487	Hs.128453	NM_001463	HPRD:07282	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled-related protein	protein-coding
19-PTNLD28-TUMOR_peak_25847	chr12	102799881	102800277	+	10.12146	NA	intron (NM_001111284, intron 3 of 3)	intron (NM_001111284, intron 3 of 3)	72350	NM_001111284	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_23462	chr12	26348206	26348552	+	10.12146	NA	promoter-TSS (NM_005086)	promoter-TSS (NM_005086)	110	NM_001135823	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_35483	chr15	100879308	100879454	+	10.12146	NA	intron (NM_139057, intron 2 of 21)	intron (NM_139057, intron 2 of 21)	2802	NM_139057	170691	Hs.513200	NM_139057	HPRD:06332	ADAMTS17	-	ADAM metallopeptidase with thrombospondin type 1 motif, 17	protein-coding
19-PTNLD28-TUMOR_peak_89207	chr6	116380900	116381208	+	10.12146	NA	intron (NM_002031, intron 1 of 7)	intron (NM_002031, intron 1 of 7)	867	NM_002031	2444	Hs.89426	NM_002031		FRK	GTK|PTK5|RAK	fyn-related Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_46884	chr19	6066909	6067204	+	10.12146	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	43608	NM_000635	5990	Hs.465709	NM_000635	HPRD:00824	RFX2	-	regulatory factor X, 2 (influences HLA class II expression)	protein-coding
19-PTNLD28-TUMOR_peak_66272	chr3	4958726	4958837	+	10.12146	NA	Intergenic	L1HS|LINE|L1	18871	NR_037903	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43804	chr17	77015768	77015877	+	10.12146	NA	intron (NR_040019, intron 2 of 2)	intron (NR_040019, intron 2 of 2)	-3194	NM_153372	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_189	chr1	1875316	1875883	+	10.12146	NA	Intergenic	Intergenic	-24859	NM_178545	339456	Hs.123423	NM_178545	HPRD:14166	TMEM52	-	transmembrane protein 52	protein-coding
19-PTNLD28-TUMOR_peak_65750	chr22	42935496	42935622	+	10.11846	NA	Intergenic	L2|LINE|L2	-14309	NR_104301	253190	Hs.728878	NM_014509	HPRD:15908	SERHL2	dJ222E13.1	serine hydrolase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_72779	chr3	184098074	184098289	+	10.11846	NA	promoter-TSS (NM_001289998)	promoter-TSS (NM_001289998)	320	NM_003741	8646	Hs.166186	NM_003741	HPRD:04592	CHRD	-	chordin	protein-coding
19-PTNLD28-TUMOR_peak_33074	chr15	37198215	37198354	+	10.11846	NA	intron (NR_051953, intron 8 of 11)	intron (NR_051953, intron 8 of 11)	-19550	NR_024264	145845	Hs.302693	NM_001101327		LOC145845	-	uncharacterized LOC145845	ncRNA
19-PTNLD28-TUMOR_peak_74802	chr4	25486672	25486922	+	10.11846	NA	Intergenic	MER57A1|LTR|ERV1	107949	NM_013367	29945	Hs.152173	NM_013367	HPRD:09505	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_3096	chr1	44997867	44997984	+	10.11846	NA	intron (NM_018150, intron 2 of 14)	L3|LINE|CR1	-13240	NR_049849	100847089		NR_049849		MIR5584	-	microRNA 5584	ncRNA
19-PTNLD28-TUMOR_peak_5724	chr1	115845042	115845311	+	10.11846	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	35681	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_103956	chr9	79030787	79030931	+	10.11846	NA	Intergenic	Intergenic	17344	NR_026890	653162	Hs.655646	NR_026890	ENSG00000234618	RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_89205	chr6	116329933	116330279	+	10.11846	NA	intron (NM_002031, intron 1 of 7)	MER57B1|LTR|ERV1	-29788	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_88923	chr6	105388452	105388931	+	10.11846	NA	promoter-TSS (NR_046407)	promoter-TSS (NR_046407)	-289	NR_046407	100113403	Hs.649249	NR_046407	ENSG00000203809	LINC00577	C6orf220|dJ439I14.1	long intergenic non-protein coding RNA 577	ncRNA
19-PTNLD28-TUMOR_peak_49872	chr19	50268819	50269019	+	10.11612	NA	Intergenic	Intergenic	-1261	NM_130787	160	Hs.467125	NM_014203	HPRD:03016	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor-related protein complex 2, alpha 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_86440	chr6	30070968	30071081	+	10.11552	NA	3' UTR (NM_007028, exon 9 of 9)	3' UTR (NM_007028, exon 9 of 9)	9843	NM_007028	11074	Hs.493275	NM_007028	HPRD:10281	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
19-PTNLD28-TUMOR_peak_48705	chr19	36162764	36162982	+	10.11483	NA	intron (NR_046420, intron 1 of 1)	L1MC5|LINE|L1	1320	NR_046420	100862728	Hs.569952	NR_046420	ENSG00000226510	UPK1A-AS1	-	UPK1A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102681	chr9	33172354	33172655	+	10.11483	NA	intron (NR_108108, intron 1 of 3)	LTR45C|LTR|ERV1	4647	NR_108108	101929639	Hs.545818	NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33124	chr15	39872499	39872669	+	10.11483	NA	promoter-TSS (NM_003246)	promoter-TSS (NM_003246)	-696	NM_003246	7057	Hs.164226	NM_003246		THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
19-PTNLD28-TUMOR_peak_51738	chr2	27531295	27531511	+	10.11483	NA	promoter-TSS (NM_003353)	promoter-TSS (NM_003353)	-273	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
19-PTNLD28-TUMOR_peak_40462	chr17	18314915	18315082	+	10.11281	NA	non-coding (NR_104343, exon 1 of 2)	non-coding (NR_104343, exon 1 of 2)	525	NR_104343	400579	Hs.375092	NR_104343	HPRD:13421	FLJ35934	-	FLJ35934	ncRNA
19-PTNLD28-TUMOR_peak_11806	chr10	5545516	5545722	+	10.11281	NA	Intergenic	Intergenic	-4086	NM_017422	51806	Hs.180142	NM_017422	HPRD:05538	CALML5	CLSP	calmodulin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_76222	chr4	89377608	89377802	+	10.11281	NA	promoter-TSS (NM_016323)	promoter-TSS (NM_016323)	-563	NM_016323	51191	Hs.26663	NM_016323	HPRD:10502	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
19-PTNLD28-TUMOR_peak_3819	chr1	59251098	59251313	+	10.11182	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	382	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_54237	chr2	96306644	96307015	+	10.10972	NA	Intergenic	Intergenic	49063	NM_138800	129868	Hs.232026	NM_138800	HPRD:15560	TRIM43	TRIM43A	tripartite motif containing 43	protein-coding
19-PTNLD28-TUMOR_peak_46624	chr19	1939987	1940521	+	10.10749	NA	promoter-TSS (NM_001319)	promoter-TSS (NM_001319)	-907	NM_001319	1455	Hs.651905	NM_001319	HPRD:03738	CSNK1G2	CK1g2	casein kinase 1, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_60961	chr20	37089384	37089541	+	10.10749	NA	Intergenic	SVA_D|Other|Other	11450	NR_002986	677837	Hs.16936	NR_002986	ENSG00000199266	SNORA60	ACA60	small nucleolar RNA, H/ACA box 60	snoRNA
19-PTNLD28-TUMOR_peak_78194	chr4	183735418	183735647	+	10.10749	NA	Intergenic	LTR7Y|LTR|ERV1	103098	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_66772	chr3	13863621	13863855	+	10.10749	NA	intron (NM_004625, intron 3 of 3)	L1MB7|LINE|L1	57880	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	wingless-type MMTV integration site family, member 7A	protein-coding
19-PTNLD28-TUMOR_peak_48958	chr19	39440459	39440748	+	10.10749	NA	intron (NM_148169, intron 2 of 5)	CpG	2724	NM_148169	115290	Hs.531770	NM_024907	HPRD:16436	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
19-PTNLD28-TUMOR_peak_45642	chr18	46367766	46368010	+	10.10749	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	101289	NM_001190823	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_57432	chr2	190444470	190444626	+	10.10721	NA	exon (NM_014585, exon 2 of 8)	exon (NM_014585, exon 2 of 8)	989	NM_014585	30061	Hs.643005	NM_014585	HPRD:05229	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_20605	chr11	93517860	93518106	+	10.10721	NA	intron (NM_004268, intron 1 of 11)	CpG	578	NM_004268	9440	Hs.444931	NM_004268		MED17	CRSP6|CRSP77|DRIP80|TRAP80	mediator complex subunit 17	protein-coding
19-PTNLD28-TUMOR_peak_35844	chr16	2769367	2769554	+	10.10721	NA	intron (NM_031948, intron 1 of 5)	intron (NM_031948, intron 1 of 5)	1092	NM_031948	83886	Hs.332878	NM_031948		PRSS27	CAPH2|MPN	protease, serine 27	protein-coding
19-PTNLD28-TUMOR_peak_22028	chr11	128078479	128078645	+	10.10477	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	313643	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_34281	chr15	70559264	70559425	+	10.10219	NA	Intergenic	L2c|LINE|L2	-169088	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_9053	chr1	197411315	197411444	+	10.10205	NA	exon (NM_201253, exon 11 of 12)	exon (NM_201253, exon 11 of 12)	174045	NR_047564	23418	Hs.126135	NM_012076	HPRD:05019	CRB1	LCA8|RP12	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding
19-PTNLD28-TUMOR_peak_78441	chr4	187808436	187808813	+	10.10205	NA	Intergenic	Intergenic	-163637	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_76023	chr4	83996984	83997160	+	10.10205	NA	TTS (NM_001258006)	TTS (NM_001258006)	33940	NM_001130716	51316	Hs.546392	NM_016619	HPRD:06335	PLAC8	C15|DGIC|onzin	placenta-specific 8	protein-coding
19-PTNLD28-TUMOR_peak_10396	chr1	224803742	224803874	+	10.10205	NA	promoter-TSS (NM_152495)	promoter-TSS (NM_152495)	-371	NM_152495	149111	Hs.731723	NM_152495	HPRD:08799	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
19-PTNLD28-TUMOR_peak_77286	chr4	141489927	141490288	+	10.10205	NA	promoter-TSS (NM_021833)	promoter-TSS (NM_021833)	-148	NM_021833	7350	Hs.249211	NM_021833		UCP1	SLC25A7|UCP	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding
19-PTNLD28-TUMOR_peak_23893	chr12	45270520	45270776	+	10.10205	NA	promoter-TSS (NM_001145107)	promoter-TSS (NM_001145107)	-15	NM_001145107	4753	Hs.505326	NM_006159	HPRD:11891	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_56305	chr2	151537974	151538389	+	10.10205	NA	Intergenic	LTR26|LTR|ERV1	52770	NR_110245	101929282	Hs.126866	NR_110244		LOC101929282	-	uncharacterized LOC101929282	ncRNA
19-PTNLD28-TUMOR_peak_95510	chr7	134434967	134435075	+	10.10205	NA	Intergenic	LTR50|LTR|ERVL	-29143	NM_004342	800	Hs.490203	NM_004342	HPRD:00251	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
19-PTNLD28-TUMOR_peak_6892	chr1	152619268	152619460	+	10.10205	NA	Intergenic	Intergenic	-16523	NM_178430	353141	Hs.490225	NM_178430	HPRD:17261	LCE2D	LEP12|SPRL1A	late cornified envelope 2D	protein-coding
19-PTNLD28-TUMOR_peak_21147	chr11	111807945	111808304	+	10.10205	NA	5' UTR (NM_001037954, exon 1 of 20)	5' UTR (NM_001037954, exon 1 of 20)	197	NM_001037954	85458	Hs.655626	NM_033425	HPRD:16804	DIXDC1	CCD1	DIX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51457	chr2	20595882	20596037	+	10.10205	NA	Intergenic	Intergenic	-45348	NM_015317	23369	Hs.467824	NM_015317	HPRD:09527	PUM2	PUMH2|PUML2	pumilio RNA-binding family member 2	protein-coding
19-PTNLD28-TUMOR_peak_79819	chr5	51383448	51383587	+	10.10205	NA	Intergenic	L1HS|LINE|L1	-700257	NM_015946	53918	Hs.644352	NM_015946		PELO	PRO1770	pelota homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_11190	chr1	237291547	237291659	+	10.10205	NA	intron (NM_001035, intron 1 of 104)	SVA_F|Other|Other	85901	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_103162	chr9	41329881	41330083	+	10.10205	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2618	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_100846	chr8	128993509	128993836	+	10.10205	NA	intron (NR_003367, intron 2 of 7)	intron (NR_003367, intron 2 of 7)	20793	NR_031610	100302161		NR_031610	miRBase:MI0006338	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_74260	chr4	7559318	7559469	+	10.10205	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	97638	NR_036238	100422826		NR_036238		MIR4274	-	microRNA 4274	ncRNA
19-PTNLD28-TUMOR_peak_27181	chr12	130707253	130707647	+	10.10205	NA	Intergenic	Intergenic	60446	NM_007197	11211	Hs.31664	NM_007197	HPRD:05853	FZD10	CD350|FZ-10|Fz10|FzE7|hFz10	frizzled class receptor 10	protein-coding
19-PTNLD28-TUMOR_peak_108018	chrX	40861296	40861636	+	10.10205	NA	Intergenic	Intergenic	-83422	NM_001039590	8239	Hs.77578	NM_004652	HPRD:02091	USP9X	DFFRX|FAF|FAM|MRX99	ubiquitin specific peptidase 9, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_15187	chr10	101155627	101155760	+	10.10205	NA	TTS (NM_002079)	TTS (NM_002079)	34837	NM_002079	2805	Hs.500756	NM_002079	HPRD:00687	GOT1	ASTQTL1|GIG18|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_89473	chr6	132129285	132129589	+	10.10205	NA	intron (NM_006208, intron 1 of 24)	CpG	281	NM_006208	5167	Hs.527295	NM_006208	HPRD:01415	ENPP1	ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_87809	chr6	46701255	46701457	+	10.10065	NA	intron (NM_001168357, intron 1 of 11)	intron (NM_001168357, intron 1 of 11)	1795	NM_005084	7941	Hs.584823	NM_005084	HPRD:03407	PLA2G7	LDL-PLA2|LP-PLA2|PAFAD|PAFAH	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding
19-PTNLD28-TUMOR_peak_104638	chr9	95895888	95896123	+	10.10065	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	565	NM_004148	4814	Hs.494457	NM_004148	HPRD:03639	NINJ1	NIN1|NINJURIN	ninjurin 1	protein-coding
19-PTNLD28-TUMOR_peak_96413	chr7	151387802	151387922	+	10.09681	NA	intron (NM_001040633, intron 3 of 15)	intron (NM_001040633, intron 3 of 15)	-58518	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_43590	chr17	74723911	74724052	+	10.09188	NA	intron (NM_001206987, intron 1 of 3)	intron (NM_001206987, intron 1 of 3)	1069	NM_001206987	124512	Hs.74655	NM_001080510	ENSG00000181038	METTL23	C17orf95	methyltransferase like 23	protein-coding
19-PTNLD28-TUMOR_peak_51072	chr2	10549349	10549475	+	10.09120	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	37563	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
19-PTNLD28-TUMOR_peak_71700	chr3	150263337	150263471	+	10.08740	NA	intron (NM_014445, intron 2 of 2)	intron (NM_014445, intron 2 of 2)	1024	NM_014445	27230	Hs.713956	NM_014445	HPRD:18037	SERP1	RAMP4	stress-associated endoplasmic reticulum protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61834	chr20	49208863	49209114	+	10.08564	NA	exon (NM_001290268, exon 19 of 22)	exon (NM_001290268, exon 19 of 22)	6665	NR_030375	693230		NR_030375	miRBase:MI0003660	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
19-PTNLD28-TUMOR_peak_57125	chr2	177016206	177016343	+	10.08564	NA	5' UTR (NM_014621, exon 1 of 2)	5' UTR (NM_014621, exon 1 of 2)	161	NM_014621	3233	Hs.591609	NM_014621	HPRD:00864	HOXD4	HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2	homeobox D4	protein-coding
19-PTNLD28-TUMOR_peak_62613	chr20	62338627	62339361	+	10.08564	NA	promoter-TSS (NM_001195654)	promoter-TSS (NM_001195654)	200	NM_001083113	84619	Hs.590868	NM_032527	HPRD:15736	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger, CCCH-type with G patch domain	protein-coding
19-PTNLD28-TUMOR_peak_81863	chr5	124242475	124242737	+	10.08564	NA	Intergenic	Intergenic	-129918	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA
19-PTNLD28-TUMOR_peak_32715	chr15	28631883	28632047	+	10.08564	NA	intron (NR_033353, intron 12 of 17)	intron (NR_033353, intron 12 of 17)	8181	NR_033353	283768	Hs.169639	NM_001012420	HPRD:17331	GOLGA8G	-	golgin A8 family, member G	pseudo
19-PTNLD28-TUMOR_peak_57518	chr2	192351773	192351890	+	10.08342	NA	Intergenic	Intergenic	-190967	NM_001254736	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46060	chr18	59561514	59561839	+	10.08342	NA	Intergenic	CpG	-1372	NM_173557	220441	Hs.165062	NM_173557		RNF152	-	ring finger protein 152	protein-coding
19-PTNLD28-TUMOR_peak_5812	chr1	116925037	116925232	+	10.08342	NA	promoter-TSS (NM_001160234)	promoter-TSS (NM_001160234)	-858	NM_001160234	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_56012	chr2	138705465	138705555	+	10.08342	NA	Intergenic	Intergenic	-16298	NM_006895	3176	Hs.42151	NM_006895	HPRD:05575	HNMT	HMT|HNMT-S1|HNMT-S2	histamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_68422	chr3	53880203	53880580	+	10.08342	NA	promoter-TSS (NM_018725)	promoter-TSS (NM_018725)	29	NM_018397	55349	Hs.126688	NM_018397		CHDH	-	choline dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_33444	chr15	45737422	45737874	+	10.08342	NA	Intergenic	Intergenic	12400	NR_030599	100126311		NR_030599	miRBase:MI0005544	MIR147B	MIRN147B	microRNA 147b	ncRNA
19-PTNLD28-TUMOR_peak_41264	chr17	36955656	36956017	+	10.08342	NA	TTS (NR_073428)	TTS (NR_073428)	322	NM_003559	8396	Hs.260603	NM_003559	HPRD:04463	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding
19-PTNLD28-TUMOR_peak_81061	chr5	87971649	87971885	+	10.08342	NA	intron (NR_015436, intron 1 of 4)	CpG	2495	NR_024383	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|Visc-1a|Visc-1b	long intergenic non-protein coding RNA 461	ncRNA
19-PTNLD28-TUMOR_peak_57724	chr2	201123699	201124003	+	10.08342	NA	Intergenic	Intergenic	-46753	NM_015535	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_6455	chr1	147193920	147194177	+	10.08342	NA	Intergenic	MIRb|SINE|MIR	38666	NM_181703	2702	Hs.447968	NM_005266	HPRD:08699	GJA5	ATFB11|CX40	gap junction protein, alpha 5, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_23621	chr12	31271968	31272164	+	10.08342	NA	Intergenic	Intergenic	-45285	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2964	chr1	43601812	43601994	+	10.08342	NA	Intergenic	MER41A|LTR|ERV1	-11691	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	family with sequence similarity 183, member A	protein-coding
19-PTNLD28-TUMOR_peak_93304	chr7	73915731	73915915	+	10.08342	NA	intron (NM_005685, intron 1 of 26)	intron (NM_005685, intron 1 of 26)	47703	NM_001199207	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43927	chr17	78997673	78997801	+	10.08342	NA	Intergenic	Intergenic	10782	NR_026857	440465	Hs.448889	NM_001004336	HPRD:13544	BAIAP2-AS1	-	BAIAP2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_109172	chrX	109999000	109999119	+	10.08330	NA	intron (NM_001143981, intron 4 of 11)	Plat_L3|LINE|CR1	40017	NM_145234	91851	Hs.496587	NM_145234	HPRD:02285	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_72288	chr3	170529310	170529441	+	10.08330	NA	Intergenic	Intergenic	58670	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_8737	chr1	183241550	183241678	+	10.08307	NA	intron (NM_170706, intron 8 of 10)	intron (NM_170706, intron 8 of 10)	32395	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_85017	chr6	5026481	5026583	+	10.08307	NA	Intergenic	Intergenic	-22235	NM_001286132	10799	Hs.511756	NM_006638	HPRD:09361	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_30888	chr14	68110443	68110717	+	10.08307	NA	intron (NM_001172, intron 3 of 7)	(A)n|Simple_repeat|Simple_repeat	24001	NM_001172	384	Hs.226007	NM_001172	HPRD:00143	ARG2	-	arginase 2	protein-coding
19-PTNLD28-TUMOR_peak_29950	chr14	37050358	37050591	+	10.08307	NA	exon (NM_014360, exon 2 of 2)	exon (NM_014360, exon 2 of 2)	1312	NM_014360	26257	Hs.234763	NM_014360		NKX2-8	NKX2.8|NKX2H|Nkx2-9	NK2 homeobox 8	protein-coding
19-PTNLD28-TUMOR_peak_24254	chr12	51961895	51962170	+	10.08307	NA	Intergenic	L1HS|LINE|L1	-22988	NM_001177984	6334	Hs.436550	NM_014191	HPRD:09006	SCN8A	CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium channel, voltage gated, type VIII, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_37769	chr16	50515821	50516051	+	10.08307	NA	Intergenic	AluJb|SINE|Alu	-66305	NM_033119	85407	Hs.187578	NM_033119		NKD1	Naked1	naked cuticle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_82840	chr5	142128553	142128778	+	10.08307	NA	intron (NR_110558, intron 1 of 3)	MER5B|DNA|hAT-Charlie	3500	NR_110558	101926975	Hs.638583	NR_110558		LOC101926975	-	uncharacterized LOC101926975	ncRNA
19-PTNLD28-TUMOR_peak_50586	chr19	59016020	59016403	+	10.08307	NA	intron (NM_012254, intron 3 of 9)	AluY|SINE|Alu	7221	NM_012254	10998	Hs.292177	NM_012254	HPRD:04499	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 (fatty acid transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_35934	chr16	3553694	3553882	+	10.07820	NA	intron (NM_015041, intron 1 of 11)	intron (NM_015041, intron 1 of 11)	2843	NM_015041	23059	Hs.155995	NM_015041	HPRD:10013	CLUAP1	CFAP22|FAP22	clusterin associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_60586	chr20	32262563	32262753	+	10.07820	NA	promoter-TSS (NM_031232)	promoter-TSS (NM_031232)	-394	NM_031231	63941	Hs.516986	NM_031231	HPRD:07168	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_11038	chr1	234944359	234944487	+	10.07718	NA	Intergenic	Intergenic	84634	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_4046	chr1	64134088	64134222	+	10.07710	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	45268	NM_001172818	5236	Hs.1869	NM_002633	HPRD:01389	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
19-PTNLD28-TUMOR_peak_101930	chr9	1009235	1009339	+	10.07666	NA	Intergenic	Intergenic	32319	NM_021240	58524	Hs.189174	NM_021240	HPRD:16827	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_89603	chr6	137337683	137337823	+	10.07666	NA	intron (NM_014432, intron 2 of 6)	intron (NM_014432, intron 2 of 6)	-23385	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA
19-PTNLD28-TUMOR_peak_10381	chr1	224565473	224565575	+	10.07666	NA	TTS (NM_014184)	TTS (NM_014184)	20489	NR_039896	100616468		NR_039896		MIR4742	-	microRNA 4742	ncRNA
19-PTNLD28-TUMOR_peak_45052	chr18	26002233	26002442	+	10.07666	NA	Intergenic	L1HS|LINE|L1	-244892	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_32097	chr14	102173708	102173869	+	10.07666	NA	Intergenic	Intergenic	-22986	NR_026774	145200	Hs.150840	NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
19-PTNLD28-TUMOR_peak_98354	chr8	40393420	40393579	+	10.07666	NA	intron (NM_001135731, intron 5 of 5)	intron (NM_001135731, intron 5 of 5)	361844	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_76976	chr4	125825439	125825545	+	10.07666	NA	Intergenic	Intergenic	-191605	NM_020337	57182	Hs.480694	NM_020337	HPRD:13843	ANKRD50	-	ankyrin repeat domain 50	protein-coding
19-PTNLD28-TUMOR_peak_12487	chr10	25198105	25198198	+	10.07666	NA	intron (NM_001282786, intron 3 of 7)	AluJo|SINE|Alu	43422	NM_020200	56952	Hs.405619	NM_020200	HPRD:17917	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51554	chr2	24123925	24124092	+	10.07666	NA	intron (NR_125717, intron 1 of 28)	intron (NR_125717, intron 1 of 28)	25976	NR_125717	54454	Hs.467862	NM_017552	ENSG00000119778	ATAD2B	-	ATPase family, AAA domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_80196	chr5	61229994	61230099	+	10.07666	NA	Intergenic	Intergenic	-198521	NR_105000	100506526	Hs.662277	NR_105000	ENSG00000251575	LOC100506526	-	uncharacterized LOC100506526	ncRNA
19-PTNLD28-TUMOR_peak_98461	chr8	42163433	42163677	+	10.07666	NA	intron (NR_033818, intron 6 of 21)	intron (NR_033818, intron 6 of 21)	-32418	NM_002690	5423	Hs.654484	NM_002690	HPRD:07517	POLB	-	polymerase (DNA directed), beta	protein-coding
19-PTNLD28-TUMOR_peak_10764	chr1	230106497	230106682	+	10.07666	NA	Intergenic	Intergenic	-86947	NM_001291866	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_27277	chr12	132933365	132933594	+	10.07666	NA	Intergenic	Intergenic	27043	NR_120467	101928416		NR_120467		LOC101928416	-	uncharacterized LOC101928416	ncRNA
19-PTNLD28-TUMOR_peak_13579	chr10	51265307	51265488	+	10.07666	NA	intron (NR_029388, intron 11 of 12)	SVA_C|Other|Other	105934	NM_003631	8505	Hs.535298	NM_003631		PARG	PARG99	poly (ADP-ribose) glycohydrolase	protein-coding
19-PTNLD28-TUMOR_peak_76091	chr4	85702202	85702428	+	10.07666	NA	intron (NM_014991, intron 25 of 67)	intron (NM_014991, intron 25 of 67)	185229	NM_014991	23001	Hs.480116	NM_014991	HPRD:10304	WDFY3	ALFY|ZFYVE25	WD repeat and FYVE domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_99368	chr8	85337534	85337765	+	10.07666	NA	intron (NM_001100392, intron 2 of 9)	L1PA2|LINE|L1	240549	NM_001100391	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_25020	chr12	65363174	65363371	+	10.07666	NA	intron (NR_033988, intron 2 of 2)	intron (NR_033988, intron 2 of 2)	85718	NR_033988	400046	Hs.591032	NR_033988	ENSG00000255693	FLJ41278	-	uncharacterized LOC400046	ncRNA
19-PTNLD28-TUMOR_peak_13530	chr10	50189509	50189622	+	10.07666	NA	intron (NM_020945, intron 61 of 61)	intron (NM_020945, intron 61 of 61)	4067	NR_036182	100422895		NR_036182	miRBase:MI0015827	MIR4294	-	microRNA 4294	ncRNA
19-PTNLD28-TUMOR_peak_33143	chr15	40374005	40374204	+	10.07666	NA	Intergenic	Intergenic	24183	NM_001003942	90427	Hs.591104	NM_033503	HPRD:05881	BMF	-	Bcl2 modifying factor	protein-coding
19-PTNLD28-TUMOR_peak_15500	chr10	106293831	106293932	+	10.07666	NA	Intergenic	L1PA3|LINE|L1	-53848	NR_120624	101927523	Hs.407539	NR_120624	ENSG00000225768	LOC101927523	-	uncharacterized LOC101927523	ncRNA
19-PTNLD28-TUMOR_peak_5505	chr1	111284977	111285083	+	10.07666	NA	Intergenic	LTR8|LTR|ERV1	-67375	NM_002232	3738	Hs.169948	NM_002232	HPRD:15937	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_14510	chr10	80176034	80176459	+	10.07666	NA	Intergenic	Intergenic	149161	NR_073447	414243	Hs.55047	NR_073447	ENSG00000227136	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
19-PTNLD28-TUMOR_peak_11257	chr1	240048182	240048334	+	10.07666	NA	intron (NM_000740, intron 4 of 4)	intron (NM_000740, intron 4 of 4)	14914	NR_046582	100873984	Hs.199475	NR_046582		CHRM3-AS1	-	CHRM3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71305	chr3	140617291	140617427	+	10.07666	NA	Intergenic	Intergenic	-43303	NM_018155	55186	Hs.144130	NM_018155	HPRD:07688	SLC25A36	PNC2	solute carrier family 25 (pyrimidine nucleotide carrier ), member 36	protein-coding
19-PTNLD28-TUMOR_peak_38194	chr16	65188272	65188497	+	10.07666	NA	intron (NR_110918, intron 3 of 3)	intron (NR_110918, intron 3 of 3)	22092	NR_110918	101927650	Hs.634008	NR_110918		LOC101927650	-	uncharacterized LOC101927650	ncRNA
19-PTNLD28-TUMOR_peak_9840	chr1	208181519	208181691	+	10.07666	NA	Intergenic	L2c|LINE|L2	-96922	NM_001773	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
19-PTNLD28-TUMOR_peak_40539	chr17	19130056	19130202	+	10.07350	NA	Intergenic	Intergenic	7434	NM_001291905	388436	Hs.677375	NM_001291905		LOC388436	-	uncharacterized protein ENSP00000382042	protein-coding
19-PTNLD28-TUMOR_peak_7978	chr1	167424092	167424347	+	10.07350	NA	intron (NM_198053, intron 1 of 7)	CpG	63628	NM_198053	919	Hs.156445	NM_000734	HPRD:01729	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
19-PTNLD28-TUMOR_peak_26234	chr12	110326118	110326411	+	10.07350	NA	Intergenic	Intergenic	-7971	NM_016433	51228	Hs.381256	NM_016433	HPRD:16409	GLTP	-	glycolipid transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_40132	chr17	8905023	8905161	+	10.07350	NA	Intergenic	Intergenic	-19767	NM_004822	9423	Hs.660885	NM_004822	HPRD:03368	NTN1	NTN1L	netrin 1	protein-coding
19-PTNLD28-TUMOR_peak_24756	chr12	57521533	57521958	+	10.07350	NA	promoter-TSS (NM_002332)	promoter-TSS (NM_002332)	-537	NM_002332	4035	Hs.162757	NM_002332	HPRD:00138	LRP1	A2MR|APOER|APR|CD91|IGFBP3R|LRP|LRP1A|TGFBR5	low density lipoprotein receptor-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_56929	chr2	171786851	171787035	+	10.07275	NA	intron (NM_015530, intron 1 of 9)	intron (NM_015530, intron 1 of 9)	1907	NM_015530	26003	Hs.431317	NM_015530	HPRD:08303	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2, 55kDa	protein-coding
19-PTNLD28-TUMOR_peak_59041	chr2	237478334	237478540	+	10.07155	NA	promoter-TSS (NM_020311)	promoter-TSS (NM_020311)	57	NM_020311	57007	Hs.471751	NM_020311	HPRD:09882	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_60488	chr20	30945285	30945545	+	10.07155	NA	promoter-TSS (NM_001164603)	promoter-TSS (NM_001164603)	-732	NM_001164603	171023	Hs.374043	NM_015338	HPRD:16516	ASXL1	BOPS|MDS	additional sex combs like transcriptional regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_61413	chr20	44859701	44859816	+	10.07155	NA	intron (NM_021248, intron 3 of 11)	intron (NM_021248, intron 3 of 11)	77379	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_81063	chr5	87986848	87987020	+	10.07155	NA	Intergenic	Intergenic	-6314	NR_015436	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|Visc-1a|Visc-1b	long intergenic non-protein coding RNA 461	ncRNA
19-PTNLD28-TUMOR_peak_32916	chr15	32662834	32663072	+	10.07155	NA	Intergenic	Intergenic	32540	NM_001282493	653125		NM_001282493		GOLGA8K	-	golgin A8 family, member K	protein-coding
19-PTNLD28-TUMOR_peak_20014	chr11	74345654	74345893	+	10.07155	NA	intron (NR_046409, intron 9 of 10)	intron (NR_046409, intron 9 of 10)	42123	NR_046410	10714	Hs.82502	NM_006591	HPRD:11446	POLD3	P66|P68|PPP1R128	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_65556	chr22	39566932	39567084	+	10.07155	NA	Intergenic	Intergenic	-18470	NM_175709	23492	Hs.356416	NM_175709	HPRD:12234	CBX7	-	chromobox homolog 7	protein-coding
19-PTNLD28-TUMOR_peak_62305	chr20	56229439	56229757	+	10.07155	NA	intron (NM_199169, intron 2 of 3)	intron (NM_199169, intron 2 of 3)	-33966	NM_001160418	81030	Hs.302123	NM_030776	HPRD:09484	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_19450	chr11	66823301	66823401	+	10.07155	NA	promoter-TSS (NM_014578)	promoter-TSS (NM_014578)	-938	NM_014578	29984	Hs.15114	NM_014578	HPRD:05776	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
19-PTNLD28-TUMOR_peak_31214	chr14	73705367	73705492	+	10.07155	NA	intron (NM_173462, intron 1 of 25)	intron (NM_173462, intron 1 of 25)	1224	NM_173462	89932	Hs.509909	NM_173462	HPRD:15099	PAPLN	-	papilin, proteoglycan-like sulfated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_70841	chr3	131331477	131331754	+	10.07155	NA	intron (NM_001289112, intron 7 of 15)	MER117|DNA|hAT-Charlie	-109755	NM_007208	11222	Hs.205163	NM_007208	HPRD:06175	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_103561	chr9	69253438	69253627	+	10.07155	NA	intron (NM_001085457, intron 4 of 14)	AluJo|SINE|Alu	9061	NM_001085457	644019	Hs.597638	NM_001085457	ENSG00000204790	CBWD6	-	COBW domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_82703	chr5	140714000	140714326	+	10.07155	NA	intron (NM_018912, intron 1 of 3)	AluJb|SINE|Alu	3911	NM_031993	56114	Hs.368160	NM_018912	HPRD:07551	PCDHGA1	PCDH-GAMMA-A1	protocadherin gamma subfamily A, 1	protein-coding
19-PTNLD28-TUMOR_peak_43967	chr17	79412125	79412269	+	10.07155	NA	exon (NM_001291324, exon 8 of 28)	exon (NM_001291324, exon 8 of 28)	6017	NR_036152	100422944		NR_036152	miRBase:MI0014229	MIR3186	-	microRNA 3186	ncRNA
19-PTNLD28-TUMOR_peak_27362	chr13	20944039	20944367	+	10.07155	NA	Intergenic	L1ME2|LINE|L1	63782	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_16979	chr11	8721527	8721647	+	10.07155	NA	intron (NM_139157, intron 13 of 18)	intron (NM_139157, intron 13 of 18)	14601	NR_002977	677826	Hs.745552	NR_002977		SNORA45B	ACA3-2|SNORA45	small nucleolar RNA, H/ACA box 45B	snoRNA
19-PTNLD28-TUMOR_peak_3892	chr1	60452327	60452477	+	10.07155	NA	Intergenic	Intergenic	-59979	NM_000775	1573	Hs.152096	NM_000775	HPRD:03159	CYP2J2	CPJ2	cytochrome P450, family 2, subfamily J, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_106206	chr9	130636898	130637029	+	10.07155	NA	intron (NM_000476, intron 1 of 6)	intron (NM_000476, intron 1 of 6)	3059	NM_000476	203	Hs.175473	NM_000476	HPRD:00046	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_101158	chr8	134680246	134680390	+	10.07155	NA	Intergenic	MIRb|SINE|MIR	-96135	NM_003033	6482	Hs.374257	NM_003033	HPRD:06219	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_8002	chr1	167745428	167745582	+	10.07155	NA	intron (NM_003953, intron 5 of 5)	(CAGAGA)n|Simple_repeat|Simple_repeat	54318	NM_001146191	9019	Hs.493919	NM_003953	HPRD:05086	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
19-PTNLD28-TUMOR_peak_86474	chr6	30512569	30512680	+	10.07155	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-11862	NM_001077497	80742	Hs.118354	NM_025263		PRR3	CAT56	proline rich 3	protein-coding
19-PTNLD28-TUMOR_peak_6035	chr1	120836072	120836259	+	10.07122	NA	Intergenic	CpG	-2840	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_66497	chr3	9956879	9957087	+	10.06736	NA	exon (NM_153483, exon 17 of 17)	exon (NM_153483, exon 17 of 17)	-1775	NR_037807	84818	Hs.129959	NM_032732	HPRD:17142	IL17RC	IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
19-PTNLD28-TUMOR_peak_66076	chr22	50327881	50328108	+	10.06078	NA	Intergenic	Intergenic	15716	NM_001284317	79174	Hs.211282	NM_024324	HPRD:08455	CRELD2	-	cysteine-rich with EGF-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_41716	chr17	42423074	42423199	+	10.05924	NA	intron (NM_002087, intron 1 of 12)	intron (NM_002087, intron 1 of 12)	645	NM_002087	2896	Hs.514220	NM_002087	HPRD:00733	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin	protein-coding
19-PTNLD28-TUMOR_peak_106131	chr9	129565089	129565271	+	10.05217	NA	Intergenic	Intergenic	-2105	NM_014007	23099	Hs.355581	NM_014007	HPRD:08346	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19-PTNLD28-TUMOR_peak_68066	chr3	48732335	48732518	+	10.05217	NA	exon (NM_001190317, exon 3 of 3)	exon (NM_001190317, exon 3 of 3)	-9060	NM_184231	51517	Hs.655006	NM_016453	HPRD:09450	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
19-PTNLD28-TUMOR_peak_65684	chr22	41836616	41836796	+	10.05217	NA	intron (NM_016272, intron 1 of 1)	AluSz|SINE|Alu	6321	NM_016272	10766	Hs.474978	NM_016272	HPRD:09583	TOB2	TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
19-PTNLD28-TUMOR_peak_87785	chr6	46012644	46012897	+	10.05217	NA	intron (NM_001114086, intron 1 of 5)	intron (NM_001114086, intron 1 of 5)	-29144	NM_016929	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_65266	chr22	35697394	35697824	+	10.05046	NA	intron (NR_024194, intron 1 of 14)	intron (NR_024194, intron 1 of 14)	1812	NR_024195	10043	Hs.474705	NM_005488	HPRD:05265	TOM1	-	target of myb1 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_37073	chr16	28856781	28856944	+	10.05046	NA	intron (NM_003321, intron 2 of 9)	intron (NM_003321, intron 2 of 9)	867	NM_003321	7284	Hs.12084	NM_003321	HPRD:03861	TUFM	COXPD4|EF-TuMT|EFTU|P43	Tu translation elongation factor, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_49056	chr19	40729181	40729368	+	10.04947	NA	intron (NM_024877, intron 4 of 4)	CpG	3323	NM_024877	79935	Hs.631603	NM_024877	HPRD:08581	CNTD2	CCNP	cyclin N-terminal domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_70212	chr3	123141839	123142194	+	10.04947	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	-6827	NM_001199642	111	Hs.593292	NM_183357	HPRD:08973	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
19-PTNLD28-TUMOR_peak_1093	chr1	16858144	16858290	+	10.04947	NA	Intergenic	AluSz|SINE|Alu	-17192	NR_037446	100500876		NR_037446	miRBase:MI0016076	MIR3675	-	microRNA 3675	ncRNA
19-PTNLD28-TUMOR_peak_31411	chr14	77474289	77474689	+	10.04844	NA	Intergenic	Intergenic	20553	NM_024496	64207	Hs.179260	NM_024496	HPRD:10713	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_83602	chr5	159492347	159492528	+	10.04844	NA	3' UTR (NM_001282500, exon 8 of 8)	3' UTR (NM_001282500, exon 8 of 8)	54015	NM_001130864	114825	Hs.744960	NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_41830	chr17	43540503	43540640	+	10.04844	NA	intron (NR_027782, intron 4 of 10).2	intron (NR_027782, intron 4 of 10).2	12230	NR_036271	100422961		NR_036271		MIR4315-2	-	microRNA 4315-2	ncRNA
19-PTNLD28-TUMOR_peak_22005	chr11	127652072	127652318	+	10.04844	NA	Intergenic	L1PA2|LINE|L1	511230	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
19-PTNLD28-TUMOR_peak_55432	chr2	122113773	122113886	+	10.04844	NA	intron (NM_001142274, intron 35 of 37)	intron (NM_001142274, intron 35 of 37)	-71051	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_108071	chrX	43739782	43740017	+	10.04844	NA	intron (NM_000898, intron 1 of 14)	intron (NM_000898, intron 1 of 14)	1822	NM_000898	4129	Hs.654473	NM_000898	HPRD:02401	MAOB	-	monoamine oxidase B	protein-coding
19-PTNLD28-TUMOR_peak_82749	chr5	141044693	141044826	+	10.04844	NA	intron (NM_022481, intron 18 of 32)	intron (NM_022481, intron 18 of 32)	-13773	NM_033449	89848	Hs.591257	NM_033449	HPRD:13320	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_29293	chr14	20212905	20213101	+	10.04844	NA	Intergenic	Intergenic	-2584	NM_172194	441669	Hs.553828	NM_172194	HPRD:17732	OR4Q3	C14orf13|HSA6|OR14-3|OR4Q4|c14_5008	olfactory receptor, family 4, subfamily Q, member 3	protein-coding
19-PTNLD28-TUMOR_peak_77000	chr4	128507742	128507914	+	10.04844	NA	Intergenic	MER57B1|LTR|ERV1	-46259	NM_015693	27152	Hs.391481	NM_015693		INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
19-PTNLD28-TUMOR_peak_104147	chr9	85572576	85572738	+	10.04844	NA	Intergenic	Intergenic	105386	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_85915	chr6	22471358	22471546	+	10.04844	NA	Intergenic	Intergenic	-98226	NM_138574	154150	Hs.629246	NM_138574	HPRD:17935	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_58985	chr2	235917320	235917497	+	10.04844	NA	intron (NM_014521, intron 2 of 5)	intron (NM_014521, intron 2 of 5)	56780	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_79523	chr5	36696248	36696388	+	10.04844	NA	Intergenic	Intergenic	89861	NM_001289940	6507	Hs.481918	NM_004172	HPRD:02523	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_30094	chr14	45951816	45951924	+	10.04844	NA	Intergenic	L1HS|LINE|L1	-229265	NM_018353	55320	Hs.732769	NM_018353	HPRD:12629	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2022	chr1	31688976	31689101	+	10.04844	NA	intron (NM_024522, intron 1 of 6)	intron (NM_024522, intron 1 of 6)	23696	NM_024522	79570	Hs.470259	NM_024522	HPRD:07786	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
19-PTNLD28-TUMOR_peak_82871	chr5	142494160	142494364	+	10.04844	NA	intron (NM_015071, intron 17 of 22)	intron (NM_015071, intron 17 of 22)	-245787	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46750	chr19	3721556	3721757	+	10.04844	NA	promoter-TSS (NM_001267561)	promoter-TSS (NM_001267561)	-41	NM_001267561	27134	Hs.25527	NM_014428	HPRD:18194	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
19-PTNLD28-TUMOR_peak_31212	chr14	73694934	73695464	+	10.04844	NA	Intergenic	Intergenic	-9006	NM_173462	89932	Hs.509909	NM_173462	HPRD:15099	PAPLN	-	papilin, proteoglycan-like sulfated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_24872	chr12	60303296	60303482	+	10.04844	NA	Intergenic	Intergenic	220271	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_92852	chr7	64337861	64338070	+	10.04844	NA	Intergenic	SST1|Satellite|centr	-25655	NR_003099	10793	Hs.520889	NM_021148		ZNF273	HZF9	zinc finger protein 273	protein-coding
19-PTNLD28-TUMOR_peak_617	chr1	9555434	9555580	+	10.04844	NA	Intergenic	CpG	-44021	NM_032315	84275	Hs.568613	NM_032315		SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 (pyrimidine nucleotide carrier), member 33	protein-coding
19-PTNLD28-TUMOR_peak_92366	chr7	46008873	46009048	+	10.04844	NA	Intergenic	MER117|DNA|hAT-Charlie	-48089	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_68410	chr3	53657659	53657857	+	10.04844	NA	intron (NM_000720, intron 3 of 48)	intron (NM_000720, intron 3 of 48)	128682	NM_000720	776	Hs.476358	NM_000720	HPRD:00247	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding
19-PTNLD28-TUMOR_peak_60047	chr20	18612994	18613101	+	10.04844	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	44491	NM_080820	92675	Hs.659442	NM_080820	ENSG00000125821	DTD1	C20orf88|DUE-B|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68	D-tyrosyl-tRNA deacylase 1	protein-coding
19-PTNLD28-TUMOR_peak_106385	chr9	132489011	132489175	+	10.04844	NA	Intergenic	Intergenic	26251	NM_004878	9536	Hs.146688	NM_004878	HPRD:05528	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
19-PTNLD28-TUMOR_peak_51336	chr2	16938590	16938780	+	10.04844	NA	Intergenic	Intergenic	-91551	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_17740	chr11	27653885	27654098	+	10.04844	NA	intron (NR_102708, intron 1 of 3)	HERVH-int|LTR|ERV1	2183	NR_102708	101410541	Hs.471439	NR_102708	ENSG00000254934	LINC00678	-	long intergenic non-protein coding RNA 678	ncRNA
19-PTNLD28-TUMOR_peak_70047	chr3	119362599	119362699	+	10.04844	NA	intron (NM_022135, intron 3 of 3)	L3|LINE|CR1	16755	NM_022135	64091	Hs.534383	NM_022135	HPRD:16160	POPDC2	POP2	popeye domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_59017	chr2	236523824	236524061	+	10.04844	NA	intron (NM_001037131, intron 1 of 17)	MIRb|SINE|MIR	121209	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_74497	chr4	10159461	10159669	+	10.04844	NA	Intergenic	Intergenic	-40992	NM_017491	9948	Hs.128548	NM_005112	HPRD:09199	WDR1	AIP1|HEL-S-52|NORI-1	WD repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_55187	chr2	117310780	117310949	+	10.04844	NA	Intergenic	L1PA5|LINE|L1	-1261391	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_82465	chr5	137968783	137969003	+	10.04844	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-57575	NM_004134	3313	Hs.184233	NM_004134	HPRD:02770	HSPA9	CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74	heat shock 70kDa protein 9 (mortalin)	protein-coding
19-PTNLD28-TUMOR_peak_54746	chr2	108888468	108888639	+	10.04844	NA	Intergenic	Intergenic	-16542	NM_001056	6819	Hs.436123	NM_001056	HPRD:03858	SULT1C2	ST1C1|ST1C2|SULT1C1|humSULTC2	sulfotransferase family, cytosolic, 1C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_55206	chr2	118590903	118591006	+	10.04632	NA	Intergenic	Intergenic	18699	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_1247	chr1	20126108	20126580	+	10.04632	NA	promoter-TSS (NM_181719)	promoter-TSS (NM_181719)	66	NM_181719	255104	Hs.656313	NM_181719	HPRD:14140	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_46011	chr18	57385487	57385654	+	10.04632	NA	Intergenic	Intergenic	-20926	NM_133459	147372	Hs.34333	NM_133459	HPRD:08703	CCBE1	-	collagen and calcium binding EGF domains 1	protein-coding
19-PTNLD28-TUMOR_peak_27883	chr13	39612420	39612565	+	10.04632	NA	promoter-TSS (NM_025138)	promoter-TSS (NM_025138)	44	NM_001017370	387921	Hs.507783	NM_001012754	HPRD:18377	NHLRC3	-	NHL repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_94332	chr7	100231046	100231186	+	10.04632	NA	exon (NM_001206855, exon 1 of 15)	exon (NM_001206855, exon 1 of 15)	157	NM_001206855	7036	Hs.544932	NM_003227	HPRD:05282	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_21981	chr11	126704213	126704343	+	10.04632	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	-106364	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_71158	chr3	138075477	138075693	+	10.04632	NA	intron (NM_001252090, intron 1 of 5)	intron (NM_001252090, intron 1 of 5)	7615	NM_001252090	22808	Hs.527021	NM_012219	HPRD:06662	MRAS	M-RAs|R-RAS3|RRAS3	muscle RAS oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_97054	chr8	8468336	8468514	+	10.04152	NA	Intergenic	Intergenic	-91241	NM_194284	137075	Hs.183617	NM_194284	HPRD:13069	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
19-PTNLD28-TUMOR_peak_70456	chr3	125783742	125784020	+	10.04152	NA	intron (NM_001164475, intron 1 of 9)	MLT1E3|LTR|ERVL-MaLR	-8263	NM_001008487	54946	Hs.573007	NM_017836	HPRD:11580	SLC41A3	SLC41A1-L2	solute carrier family 41, member 3	protein-coding
19-PTNLD28-TUMOR_peak_7741	chr1	162006874	162006979	+	10.04152	NA	Intergenic	Intergenic	-12671	NM_015441	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_46342	chr18	74819370	74819502	+	10.04152	NA	intron (NM_001025101, intron 1 of 8)	intron (NM_001025101, intron 1 of 8)	25338	NM_001025100	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_61401	chr20	44798524	44798697	+	10.04152	NA	Intergenic	Intergenic	51704	NM_152854	958	Hs.472860	NM_001250	HPRD:00178	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule, TNF receptor superfamily member 5	protein-coding
19-PTNLD28-TUMOR_peak_107621	chrX	14508074	14508348	+	10.04152	NA	Intergenic	Intergenic	-39209	NM_001118885	2742	Hs.2700	NM_002063	HPRD:02379	GLRA2	GLR	glycine receptor, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_27850	chr13	37006259	37006508	+	10.04152	NA	promoter-TSS (NM_003914)	promoter-TSS (NM_003914)	-26	NM_001111045	8900	Hs.417050	NM_003914	HPRD:04946	CCNA1	CT146	cyclin A1	protein-coding
19-PTNLD28-TUMOR_peak_22356	chr12	298318	298504	+	10.04152	NA	TTS (NM_001122848)	TTS (NM_001122848)	-14400	NR_120475	101929384	Hs.569138	NR_120475		LOC101929384	-	uncharacterized LOC101929384	ncRNA
19-PTNLD28-TUMOR_peak_41916	chr17	44928472	44928595	+	10.04152	NA	promoter-TSS (NM_003396)	promoter-TSS (NM_003396)	-435	NM_003396	7484	Hs.326420	NM_003396	HPRD:04180	WNT9B	WNT14B|WNT15	wingless-type MMTV integration site family, member 9B	protein-coding
19-PTNLD28-TUMOR_peak_40331	chr17	16420009	16420234	+	10.04152	NA	Intergenic	Intergenic	-24616	NM_207387	388341	Hs.25425	NM_207387	HPRD:16939	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
19-PTNLD28-TUMOR_peak_24351	chr12	52739877	52740066	+	10.03945	NA	Intergenic	Intergenic	18435	NM_001300810	3891	Hs.182507	NM_002283	HPRD:04139	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
19-PTNLD28-TUMOR_peak_19924	chr11	72973985	72974195	+	10.03945	NA	Intergenic	Intergenic	-1460	NM_001277205	5031	Hs.16362	NM_004154	HPRD:03906	P2RY6	P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding
19-PTNLD28-TUMOR_peak_85074	chr6	6546529	6546790	+	10.03945	NA	intron (NR_026970, intron 3 of 7)	CpG	-42275	NM_004271	9450	Hs.653138	NM_004271		LY86	MD-1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
19-PTNLD28-TUMOR_peak_35243	chr15	91477655	91477794	+	10.03907	NA	promoter-TSS (NM_018671)	promoter-TSS (NM_018671)	-491	NM_018671	55898	Hs.389461	NM_017979	HPRD:18070	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1|UNC-45A	unc-45 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_84494	chr5	179234351	179234490	+	10.03685	NA	promoter-TSS (NM_014275)	promoter-TSS (NM_014275)	417	NM_001142299	8878	Hs.724025	NM_003900	HPRD:03319	SQSTM1	A170|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
19-PTNLD28-TUMOR_peak_61773	chr20	48809427	48809569	+	10.03470	NA	promoter-TSS (NR_125739)	promoter-TSS (NR_125739)	-892	NR_125739	101927559	Hs.442486	NR_125739		CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10990	chr1	234651270	234651438	+	10.03264	NA	Intergenic	Intergenic	16171	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
19-PTNLD28-TUMOR_peak_106036	chr9	127044161	127044554	+	10.03264	NA	intron (NM_001166168, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	-9893	NM_001166171	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_9375	chr1	202926912	202927212	+	10.03052	NA	promoter-TSS (NM_001290553)	promoter-TSS (NM_001290553)	50	NM_001290553	51094	Hs.5298	NM_015999	HPRD:06402	ADIPOR1	ACDCR1|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_9315	chr1	202158191	202158284	+	10.03052	NA	intron (NR_002930, intron 21 of 21)	intron (NR_002930, intron 21 of 21)	-4881	NM_001017403	59352	Hs.497402	NM_021636	HPRD:05974	LGR6	GPCR|VTS20631	leucine-rich repeat containing G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_40417	chr17	17713715	17713886	+	10.03052	NA	TTS (NM_004176)	TTS (NM_004176)	3059	NR_106835	102465466		NR_106835		MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
19-PTNLD28-TUMOR_peak_7457	chr1	158083439	158083625	+	10.02748	NA	Intergenic	CpG	26898	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_79580	chr5	38631247	38631353	+	10.02451	NA	intron (NR_103554, intron 2 of 8)	L1PA3|LINE|L1	-35793	NM_002310	3977	Hs.133421	NM_002310	HPRD:01048	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_50255	chr19	54527292	54527460	+	10.02451	NA	Intergenic	Intergenic	31834	NM_145814	59285	Hs.631560	NM_031897	HPRD:06061	CACNG6	-	calcium channel, voltage-dependent, gamma subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_107783	chrX	22152952	22153145	+	10.02451	NA	intron (NM_001282754, intron 12 of 20)	intron (NM_001282754, intron 12 of 20)	38052	NR_046639	100873942	Hs.633194	NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98536	chr8	43414559	43414905	+	10.02451	NA	Intergenic	HERVS71-int|LTR|ERV1	267147	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family, member A	protein-coding
19-PTNLD28-TUMOR_peak_11482	chr1	246166573	246166692	+	10.02451	NA	intron (NM_022743, intron 5 of 11)	intron (NM_022743, intron 5 of 11)	414082	NM_022743	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_15130	chr10	99484266	99484463	+	10.02451	NA	Intergenic	MIR|SINE|MIR	10899	NM_031484	83742	Hs.744073	NM_031484	HPRD:14364	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42993	chr17	64187721	64187846	+	10.02451	NA	5' UTR (NM_145036, exon 1 of 27)	5' UTR (NM_145036, exon 1 of 27)	204	NM_145036	201134	Hs.408676	NM_145036	HPRD:11336	CEP112	CCDC46|MACOCO	centrosomal protein 112kDa	protein-coding
19-PTNLD28-TUMOR_peak_13800	chr10	62241399	62241580	+	10.02451	NA	intron (NM_001204403, intron 2 of 43)	AluSx1|SINE|Alu	91225	NM_001204404	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_84890	chr6	3410123	3410322	+	10.02451	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	35025	NR_104448	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_102285	chr9	16139024	16139220	+	10.02451	NA	Intergenic	Intergenic	113983	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_74015	chr4	3755939	3756052	+	10.02451	NA	Intergenic	Intergenic	-12301	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_18650	chr11	57261017	57261216	+	10.02451	NA	intron (NM_003627, intron 8 of 14)	intron (NM_003627, intron 8 of 14)	21242	NM_001198810	8501	Hs.591952	NM_003627	HPRD:07227	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 (amino acid system L transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_48521	chr19	33337359	33337569	+	10.02451	NA	intron (NM_014270, intron 9 of 12)	L1PA4|LINE|L1	23219	NM_001243036	11136	Hs.743345	NM_014270	HPRD:04997	SLC7A9	BAT1|CSNU3	solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9	protein-coding
19-PTNLD28-TUMOR_peak_102238	chr9	14433907	14434102	+	10.02451	NA	Intergenic	tRNA-His-CAY_|tRNA|tRNA	-35022	NM_001190738	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_65947	chr22	46299545	46299691	+	10.02451	NA	Intergenic	Intergenic	73390	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_80629	chr5	72750367	72750514	+	10.02451	NA	Intergenic	Intergenic	-6088	NM_004472	2297	Hs.519385	NM_004472	HPRD:03055	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
19-PTNLD28-TUMOR_peak_5641	chr1	113798367	113798524	+	10.02451	NA	Intergenic	Intergenic	-49570	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_19927	chr11	73000570	73000731	+	10.02116	NA	intron (NM_001277208, intron 1 of 1)	intron (NM_001277208, intron 1 of 1)	17463	NM_001277208	5031	Hs.16362	NM_004154	HPRD:03906	P2RY6	P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding
19-PTNLD28-TUMOR_peak_45450	chr18	43217791	43218218	+	10.02116	NA	intron (NM_007163, intron 6 of 19)	intron (NM_007163, intron 6 of 19)	23238	NM_007163	8170	Hs.710927	NM_007163	HPRD:03366	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 (urea transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_53086	chr2	64871841	64872008	+	10.02116	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	9122	NM_014755	9792	Hs.591569	NM_014755	HPRD:18040	SERTAD2	Sei-2|TRIP-Br2	SERTA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_9599	chr1	205218279	205218448	+	10.02094	NA	intron (NM_001297611, intron 1 of 3)	intron (NM_001297611, intron 1 of 3)	2739	NM_001297611	9911	Hs.6360	NM_014858	HPRD:11040	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
19-PTNLD28-TUMOR_peak_63905	chr21	45329954	45330134	+	10.02094	NA	intron (NM_020132, intron 2 of 9)	intron (NM_020132, intron 2 of 9)	-15235	NM_001037553	56894	Hs.248785	NM_020132	HPRD:10637	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_45884	chr18	55105198	55105313	+	10.02094	NA	intron (NM_004852, intron 1 of 1)	CpG	2338	NM_004852	9480	Hs.194725	NM_004852	HPRD:05354	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_35242	chr15	91475777	91475912	+	10.01705	NA	promoter-TSS (NM_198527)	promoter-TSS (NM_198527)	-45	NR_104447	374659	Hs.349979	NM_198527	HPRD:14635	HDDC3	(ppGpp)ase|MESH1	HD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_72014	chr3	158489430	158489605	+	10.01620	NA	Intergenic	Intergenic	-30198	NR_110328	64747	Hs.58663	NM_022736	HPRD:07851	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23899	chr12	45543031	45543151	+	10.01498	NA	Intergenic	LTR33|LTR|ERVL	38161	NR_001571	6090		NR_001571	ENSG00000252310	RNY5	Y5	RNA, Ro-associated Y5	ncRNA
19-PTNLD28-TUMOR_peak_9028	chr1	196150378	196150633	+	10.01498	NA	Intergenic	MER54B|LTR|ERVL	401106	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_102245	chr9	14895948	14896089	+	10.01498	NA	intron (NM_144966, intron 2 of 37)	MER41A|LTR|ERV1	14975	NM_144966	158326	Hs.50850	NM_144966	HPRD:09865	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
19-PTNLD28-TUMOR_peak_27194	chr12	131303195	131303457	+	10.01498	NA	intron (NM_194356, intron 3 of 10)	CpG	20493	NM_194356	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_82872	chr5	142522294	142522613	+	10.01498	NA	intron (NM_015071, intron 19 of 22)	intron (NM_015071, intron 19 of 22)	260801	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_8417	chr1	177589832	177590129	+	10.01498	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-79679	NR_110722	101928778	Hs.573792	NR_110722	ENSG00000236720	LOC101928778	-	uncharacterized LOC101928778	ncRNA
19-PTNLD28-TUMOR_peak_39321	chr16	88017096	88017213	+	10.01498	NA	intron (NM_001173543, intron 3 of 13)	intron (NM_001173543, intron 3 of 13)	13530	NM_001173543	54971	Hs.461705	NM_017869	HPRD:16538	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
19-PTNLD28-TUMOR_peak_78203	chr4	183801461	183802015	+	10.01498	NA	Intergenic	Intergenic	36892	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_65903	chr22	45492276	45492385	+	10.01498	NA	Intergenic	Intergenic	56135	NR_038957	100506714	Hs.189902	NR_038956		NUP50-AS1	-	NUP50 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_46753	chr19	3772238	3772357	+	10.01498	NA	promoter-TSS (NM_032753)	promoter-TSS (NM_032753)	-78	NM_032753	84839	Hs.532691	NM_032753	HPRD:17508	RAX2	ARMD6|CORD11|QRX|RAXL1	retina and anterior neural fold homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_73762	chr4	688293	688407	+	10.01498	NA	Intergenic	LTR10C|LTR|ERV1	-5120	NM_032219	84179	Hs.567612	NM_032219	HPRD:08650	MFSD7	-	major facilitator superfamily domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_72943	chr3	186344353	186344567	+	10.01498	NA	Intergenic	Intergenic	13610	NM_001622	197	Hs.324746	NM_001622	HPRD:00727	AHSG	A2HS|AHS|FETUA|HSGA	alpha-2-HS-glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_28699	chr13	95085731	95085929	+	10.01498	NA	Intergenic	Intergenic	46106	NM_001922	1638	Hs.301865	NM_001922	HPRD:01864	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
19-PTNLD28-TUMOR_peak_88671	chr6	88466679	88466930	+	10.01498	NA	Intergenic	MIRc|SINE|MIR	-27774	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
19-PTNLD28-TUMOR_peak_53670	chr2	80220429	80220779	+	10.01498	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-126895	NR_107047	102465877		NR_107047		MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
19-PTNLD28-TUMOR_peak_20836	chr11	101918137	101918563	+	10.01498	NA	intron (NM_032930, intron 1 of 6)	CpG	181	NM_032930	85016	Hs.98328	NM_032930	HPRD:14433	C11orf70	-	chromosome 11 open reading frame 70	protein-coding
19-PTNLD28-TUMOR_peak_38068	chr16	57754308	57754410	+	10.01498	NA	intron (NM_001289162, intron 9 of 18)	intron (NM_001289162, intron 9 of 18)	-15301	NM_005886	10300	Hs.275675	NM_005886	HPRD:04081	KATNB1	KAT	katanin p80 (WD repeat containing) subunit B 1	protein-coding
19-PTNLD28-TUMOR_peak_72333	chr3	171489120	171489244	+	10.01498	NA	intron (NM_001130081, intron 1 of 25)	intron (NM_001130081, intron 1 of 25)	39102	NM_001130081	5337	Hs.382865	NM_002662	HPRD:03855	PLD1	-	phospholipase D1, phosphatidylcholine-specific	protein-coding
19-PTNLD28-TUMOR_peak_104899	chr9	100752651	100752800	+	10.01498	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	7236	NM_006401	10541	Hs.730654	NM_006401	HPRD:09803	ANP32B	APRIL|PHAPI2|SSP29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_51683	chr2	26891060	26891205	+	10.01498	NA	Intergenic	L2c|LINE|L2	-24449	NM_002246	3777	Hs.645288	NM_002246		KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium channel, subfamily K, member 3	protein-coding
19-PTNLD28-TUMOR_peak_29995	chr14	39417389	39417609	+	10.01498	NA	Intergenic	L1PA16|LINE|L1	-31413	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
19-PTNLD28-TUMOR_peak_55793	chr2	132856755	132856888	+	10.01498	NA	Intergenic	L1MB2|LINE|L1	62704	NR_027019	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B-like	pseudo
19-PTNLD28-TUMOR_peak_8065	chr1	168543655	168543749	+	10.01498	NA	Intergenic	L2b|LINE|L2	-2009	NM_002995	6375	Hs.546295	NM_002995	HPRD:02595	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	chemokine (C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_33812	chr15	60419923	60420222	+	10.01498	NA	Intergenic	MIRc|SINE|MIR	123651	NM_012182	27023	Hs.734475	NM_012182	HPRD:07017	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
19-PTNLD28-TUMOR_peak_102934	chr9	36268039	36268282	+	10.01498	NA	intron (NM_001128227, intron 1 of 11)	intron (NM_001128227, intron 1 of 11)	8893	NM_001128227	10020	Hs.5920	NM_005476	HPRD:04825	GNE	DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
19-PTNLD28-TUMOR_peak_51684	chr2	26893205	26893318	+	10.01498	NA	Intergenic	Intergenic	-22320	NM_002246	3777	Hs.645288	NM_002246		KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium channel, subfamily K, member 3	protein-coding
19-PTNLD28-TUMOR_peak_55872	chr2	134587359	134587576	+	10.01498	NA	Intergenic	MIR|SINE|MIR	-261436	NM_207363	344148	Hs.537329	NM_207363	HPRD:16936	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_10335	chr1	224058579	224059150	+	10.01498	NA	Intergenic	L1PA8|LINE|L1	-25190	NM_005426	7159	Hs.523968	NM_005426	HPRD:11803	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_79804	chr5	50046941	50047103	+	10.01498	NA	intron (NM_024615, intron 3 of 25)	intron (NM_024615, intron 3 of 25)	84250	NM_001178056	79668	Hs.369581	NM_024615	HPRD:07960	PARP8	ARTD16|pART16	poly (ADP-ribose) polymerase family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_53518	chr2	74095441	74095573	+	10.01498	NA	Intergenic	MIRb|SINE|MIR	-24586	NM_001615	72	Hs.516105	NM_001615	HPRD:00016	ACTG2	ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM	actin, gamma 2, smooth muscle, enteric	protein-coding
19-PTNLD28-TUMOR_peak_56437	chr2	157188440	157188633	+	10.01272	NA	intron (NM_006186, intron 1 of 7)	intron (NM_006186, intron 1 of 7)	751	NM_006186	4929	Hs.563344	NM_006186	HPRD:03493	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_74038	chr4	3951719	3951878	+	10.00923	NA	intron (NR_024253, intron 3 of 5)	intron (NR_024253, intron 3 of 5)	5350	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_39721	chr17	2756653	2756967	+	10.00891	NA	intron (NM_015085, intron 2 of 24)	CpG	57078	NM_001100398	23108	Hs.499659	NM_015085	HPRD:17028	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_4002	chr1	62814150	62814372	+	10.00891	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-29178	NM_181712	163782	Hs.283398	NM_181712	HPRD:14109	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
19-PTNLD28-TUMOR_peak_26802	chr12	122363295	122363493	+	10.00891	NA	intron (NM_001178003, intron 3 of 17)	intron (NM_001178003, intron 3 of 17)	6931	NM_001178003	144406	Hs.709837	NM_144668	HPRD:14570	WDR66	CaM-IP4	WD repeat domain 66	protein-coding
19-PTNLD28-TUMOR_peak_62650	chr20	62676218	62676340	+	10.00891	NA	Intergenic	Intergenic	4700	NM_018419	54345	Hs.8619	NM_018419	HPRD:07208	SOX18	HLTS	SRY (sex determining region Y)-box 18	protein-coding
19-PTNLD28-TUMOR_peak_23059	chr12	11919239	11919583	+	10.00891	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	116623	NM_001987	2120	Hs.504765	NM_001987	HPRD:15976	ETV6	TEL|TEL/ABL	ets variant 6	protein-coding
19-PTNLD28-TUMOR_peak_98013	chr8	30013702	30014082	+	10.00891	NA	promoter-TSS (NM_006571)	promoter-TSS (NM_006571)	79	NM_006571	10671	Hs.158427	NM_006571	HPRD:09907	DCTN6	WS-3|WS3|p27	dynactin 6	protein-coding
19-PTNLD28-TUMOR_peak_731	chr1	10997144	10997395	+	10.00891	NA	Intergenic	MER33|DNA|hAT-Charlie	44825	NM_001170754	148345	Hs.127026	NM_173507	HPRD:08780	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
19-PTNLD28-TUMOR_peak_87715	chr6	44630244	44630541	+	10.00891	NA	Intergenic	Intergenic	227014	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_36647	chr16	19711688	19711825	+	10.00740	NA	exon (NM_020314, exon 31 of 31)	exon (NM_020314, exon 31 of 31)	-16022	NM_153208	124152	Hs.460217	NM_153208	HPRD:11340	IQCK	-	IQ motif containing K	protein-coding
19-PTNLD28-TUMOR_peak_54212	chr2	95943425	95943572	+	10.00616	NA	intron (NM_144707, intron 7 of 23)	MIRb|SINE|MIR	3297	NM_001165977	150696	Hs.437376	NM_144707	HPRD:17912	PROM2	PROML2	prominin 2	protein-coding
19-PTNLD28-TUMOR_peak_49060	chr19	40750978	40751246	+	10.00554	NA	intron (NM_001243027, intron 4 of 13)	L1MC4a|LINE|L1	-18515	NM_024877	79935	Hs.631603	NM_024877	HPRD:08581	CNTD2	CCNP	cyclin N-terminal domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_98215	chr8	37729040	37729271	+	10.00554	NA	exon (NM_001002814, exon 4 of 6)	exon (NM_001002814, exon 4 of 6)	-21724	NM_018310	55290	Hs.709301	NM_018310		BRF2	BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_10426	chr1	225662733	225662945	+	10.00554	NA	Intergenic	CpG	-46282	NM_194442	3930	Hs.435166	NM_002296	HPRD:02488	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_48053	chr19	18452073	18452177	+	10.00554	NA	intron (NM_001300927, intron 1 of 3)	intron (NM_001300927, intron 1 of 3)	717	NM_017712	54858	Hs.131776	NM_017712	HPRD:07141	PGPEP1	PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
19-PTNLD28-TUMOR_peak_20805	chr11	100562758	100562881	+	10.00554	NA	intron (NM_152432, intron 1 of 23)	intron (NM_152432, intron 1 of 23)	4412	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_108171	chrX	47161926	47162104	+	10.00554	NA	Intergenic	MER4C|LTR|ERV1	-67984	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_22357	chr12	320348	320617	+	10.00546	NA	intron (NM_003044, intron 2 of 16)	intron (NM_003044, intron 2 of 16)	2131	NM_003044	6539	Hs.437174	NM_003044	HPRD:04358	SLC6A12	BGT-1|BGT1|GAT2	solute carrier family 6 (neurotransmitter transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_47315	chr19	11384106	11384227	+	10.00013	NA	Intergenic	AluSc|SINE|Alu	-10998	NM_020812	57572	Hs.591002	NM_020812	HPRD:13243	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
19-PTNLD28-TUMOR_peak_80086	chr5	58335219	58335743	+	10.00013	NA	promoter-TSS (NM_001197221)	promoter-TSS (NM_001197221)	-142	NM_001197222	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_27357	chr13	20756531	20756628	+	10.00013	NA	Intergenic	Intergenic	10535	NM_004004	2706	Hs.524894	NM_004004	HPRD:00413	GJB2	CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein, beta 2, 26kDa	protein-coding
19-PTNLD28-TUMOR_peak_53077	chr2	64713103	64713439	+	10.00013	NA	Intergenic	Intergenic	31944	NM_014181	29094	Hs.372208	NM_014181	HPRD:13708	LGALSL	GRP	lectin, galactoside-binding-like	protein-coding
19-PTNLD28-TUMOR_peak_32914	chr15	32644954	32645220	+	10.00013	NA	Intergenic	Intergenic	50406	NM_001282493	653125		NM_001282493		GOLGA8K	-	golgin A8 family, member K	protein-coding
19-PTNLD28-TUMOR_peak_72625	chr3	181419970	181420099	+	10.00013	NA	intron (NR_075089, intron 3 of 3)	intron (NR_075089, intron 3 of 3)	-9678	NM_003106	6657	Hs.518438	NM_003106	HPRD:08921	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
19-PTNLD28-TUMOR_peak_32578	chr15	23303308	23303482	+	10.00013	NA	intron (NR_002824, intron 27 of 34)	intron (NR_002824, intron 27 of 34)	48153	NR_024074	283796	Hs.375441	NR_024074	HPRD:08189	GOLGA8I	GOLGA8IP|GOLGA9P	golgin A8 family, member I	pseudo
19-PTNLD28-TUMOR_peak_31784	chr14	93533563	93533734	+	10.00013	NA	promoter-TSS (NR_002808)	promoter-TSS (NR_002808)	-149	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32808	chr15	30477853	30478081	+	10.00013	NA	Intergenic	Intergenic	-10272	NR_026771	26082	Hs.652128	NR_026771	ENSG00000225930	DKFZP434L187	-	uncharacterized LOC26082	ncRNA
19-PTNLD28-TUMOR_peak_9763	chr1	206737028	206737208	+	10.00013	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	6626	NM_182665	83593	Hs.497579	NM_031437	HPRD:06117	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_54407	chr2	99073836	99074045	+	10.00013	NA	intron (NM_001134225, intron 1 of 24)	intron (NM_001134225, intron 1 of 24)	12619	NM_001134224	3631	Hs.469386	NM_001566	HPRD:02949	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase, type I, 107kDa	protein-coding
19-PTNLD28-TUMOR_peak_65831	chr22	44208140	44208367	+	10.00013	NA	promoter-TSS (NM_022785)	promoter-TSS (NM_022785)	-36	NM_198856	64800	Hs.658996	NM_022785	HPRD:13391	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
19-PTNLD28-TUMOR_peak_90320	chr6	159288592	159288753	+	9.99783	NA	Intergenic	AluJr|SINE|Alu	-10008	NR_028496	202459	Hs.487035	NM_145303	HPRD:14130	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40329	chr17	16389817	16390191	+	9.99551	NA	intron (NM_207387, intron 1 of 2)	intron (NM_207387, intron 1 of 2)	5501	NM_001113567	388341	Hs.25425	NM_207387	HPRD:16939	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
19-PTNLD28-TUMOR_peak_73050	chr3	187755819	187756054	+	9.99551	NA	Intergenic	LTR16D|LTR|ERVL	-115725	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_77426	chr4	146200728	146201068	+	9.99551	NA	Intergenic	Intergenic	-100066	NM_001102653	54726	Hs.270851	NM_017493	HPRD:11033	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
19-PTNLD28-TUMOR_peak_70911	chr3	133183534	133183638	+	9.99551	NA	intron (NM_003571, intron 4 of 6)	intron (NM_003571, intron 4 of 6)	64747	NM_003571	8419	Hs.659862	NM_003571	HPRD:04444	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2, phakinin	protein-coding
19-PTNLD28-TUMOR_peak_107705	chrX	18692984	18693234	+	9.99551	NA	Intergenic	Intergenic	-2886	NM_000330	6247	Hs.715725	NM_000330	HPRD:02426	RS1	RS|XLRS1	retinoschisin 1	protein-coding
19-PTNLD28-TUMOR_peak_59472	chr20	1914068	1914382	+	9.99551	NA	intron (NM_001040023, intron 6 of 7)	intron (NM_001040023, intron 6 of 7)	38399	NM_001040023	140885	Hs.581021	NM_080792	HPRD:03912	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal-regulatory protein alpha	protein-coding
19-PTNLD28-TUMOR_peak_69276	chr3	88268552	88268722	+	9.99551	NA	Intergenic	LTR41B|LTR|ERVL	-69621	NM_001195308	8545	Hs.444818	NM_003663	HPRD:04529	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_36109	chr16	8113189	8113399	+	9.99551	NA	Intergenic	Intergenic	474534	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_104915	chr9	101006298	101006807	+	9.99551	NA	intron (NR_051978, intron 1 of 11)	intron (NR_051978, intron 1 of 11)	11451	NR_051978	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_32536	chr15	22518057	22518198	+	9.99551	NA	Intergenic	Intergenic	-28438	NR_033735	646396	Hs.451294	NR_033735		REREP3	-	arginine-glutamic acid dipeptide (RE) repeats pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_7929	chr1	166114778	166115130	+	9.99551	NA	intron (NM_001017961, intron 1 of 1)	intron (NM_001017961, intron 1 of 1)	9081	NR_030626	100126349		NR_030626		MIR921	MIRN921|hsa-mir-921	microRNA 921	ncRNA
19-PTNLD28-TUMOR_peak_15903	chr10	120485762	120485989	+	9.99551	NA	intron (NM_153810, intron 3 of 8)	L2c|LINE|L2	28883	NM_153810	143384	Hs.420024	NM_153810	HPRD:12576	CACUL1	C10orf46|CAC1	CDK2-associated, cullin domain 1	protein-coding
19-PTNLD28-TUMOR_peak_12971	chr10	36723098	36723199	+	9.99551	NA	Intergenic	Intergenic	655918	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_63775	chr21	43991156	43991469	+	9.99551	NA	intron (NM_018964, intron 18 of 20)	intron (NM_018964, intron 18 of 20)	71570	NM_018964	54020	Hs.547009	NM_018964	HPRD:10479	SLC37A1	G3PP	solute carrier family 37 (glucose-6-phosphate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_15247	chr10	102747037	102747415	+	9.99551	NA	promoter-TSS (NM_001163812)	promoter-TSS (NM_001163812)	46	NM_032112	84545	Hs.421848	NM_032112	HPRD:14762	MRPL43	bMRP36a	mitochondrial ribosomal protein L43	protein-coding
19-PTNLD28-TUMOR_peak_78955	chr5	12498134	12498353	+	9.99551	NA	Intergenic	Intergenic	-76726	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_105880	chr9	124245460	124245582	+	9.99551	NA	intron (NR_003191, intron 1 of 6)	MIRc|SINE|MIR	16785	NR_045211	2681	Hs.97469	NR_003191	ENSG00000204136	GGTA1P	GGTA|GGTA1|GLYT2|a1/3GTP	glycoprotein, alpha-galactosyltransferase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29639	chr14	25511361	25511497	+	9.99551	NA	intron (NM_014178, intron 1 of 5)	intron (NM_014178, intron 1 of 5)	7666	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_84129	chr5	173810335	173810470	+	9.99551	NA	intron (NR_125806, intron 1 of 5)	intron (NR_125806, intron 1 of 5)	47045	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_76933	chr4	124426697	124427147	+	9.99551	NA	Intergenic	CpG	106277	NM_005841	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_26580	chr12	118564435	118564669	+	9.99551	NA	Intergenic	AluY|SINE|Alu	-9318	NM_002567	5037	Hs.433863	NM_002567	HPRD:06850	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_9467	chr1	203638968	203639139	+	9.99253	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	43138	NM_001684	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_91605	chr7	23338083	23338226	+	9.99253	NA	promoter-TSS (NM_138446)	promoter-TSS (NM_138446)	-786	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_93238	chr7	73441275	73441557	+	9.99253	NA	promoter-TSS (NM_001278913)	promoter-TSS (NM_001278913)	-703	NM_001278914	2006	Hs.647061	NM_000501	HPRD:00556	ELN	SVAS|WBS|WS	elastin	protein-coding
19-PTNLD28-TUMOR_peak_95810	chr7	139930886	139931285	+	9.99042	NA	Intergenic	Intergenic	54024	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_39805	chr17	4417637	4417793	+	9.99042	NA	intron (NM_001124758, intron 2 of 12)	intron (NM_001124758, intron 2 of 12)	15586	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_21938	chr11	126152902	126153030	+	9.99042	NA	promoter-TSS (NM_148910)	promoter-TSS (NM_148910)	-16	NM_001039661	114609	Hs.537126	NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	toll-interleukin 1 receptor (TIR) domain containing adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_102756	chr9	34125642	34125785	+	9.99042	NA	intron (NM_015397, intron 1 of 8)	intron (NM_015397, intron 1 of 8)	1058	NM_015397	25853	Hs.493750	NM_015397	HPRD:10031	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
19-PTNLD28-TUMOR_peak_9447	chr1	203526637	203526863	+	9.98436	NA	Intergenic	Intergenic	63479	NM_014359	26254	Hs.632468	NM_014359	HPRD:05498	OPTC	OPT	opticin	protein-coding
19-PTNLD28-TUMOR_peak_27417	chr13	22244981	22245267	+	9.97966	NA	promoter-TSS (NM_002010)	promoter-TSS (NM_002010)	-91	NM_002010	2254	Hs.111	NM_002010	HPRD:02951	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
19-PTNLD28-TUMOR_peak_100691	chr8	126527016	126527235	+	9.97966	NA	Intergenic	Intergenic	82674	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_91135	chr7	5935116	5935205	+	9.97966	NA	Intergenic	Intergenic	-3181	NM_015622	51622	Hs.530000	NM_015622	HPRD:12915	CCZ1	C7orf28A|CCZ1A|H_DJ1163J12.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_100788	chr8	128231675	128231892	+	9.97818	NA	promoter-TSS (NR_108049)	promoter-TSS (NR_108049)	-270	NR_108049	100507056	Hs.343864	NR_108049	ENSG00000247844	CCAT1	CARLo-5	colon cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_105959	chr9	125227419	125227598	+	9.97818	NA	Intergenic	MER54B|LTR|ERVL	12697	NM_001004451	347168	Hs.632692	NM_001004451	HPRD:14916	OR1J1	OR9-18|hg32	olfactory receptor, family 1, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_3464	chr1	51742057	51742250	+	9.97818	NA	Intergenic	AluJr|SINE|Alu	21480	NM_001297667	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
19-PTNLD28-TUMOR_peak_71968	chr3	157303186	157303554	+	9.97818	NA	intron (NM_001130002, intron 4 of 4)	HERVE_a-int|LTR|ERV1	42237	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_105239	chr9	110819737	110819908	+	9.97818	NA	Intergenic	MER58A|DNA|hAT-Charlie	-567775	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_109718	chrX	148655280	148655400	+	9.97818	NA	Intergenic	L1MCb|LINE|L1	13769	NM_005365	4108	Hs.460974	NM_005365	HPRD:02279	MAGEA9	CT1.9|MAGE9	melanoma antigen family A, 9	protein-coding
19-PTNLD28-TUMOR_peak_87702	chr6	44437595	44437767	+	9.97818	NA	Intergenic	Intergenic	34303	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_67221	chr3	24870571	24870958	+	9.97818	NA	Intergenic	CpG	-307838	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_100910	chr8	130089165	130089337	+	9.97818	NA	Intergenic	L2b|LINE|L2	164235	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_84523	chr5	179636165	179636317	+	9.97818	NA	promoter-TSS (NM_175062)	promoter-TSS (NM_175062)	-111	NM_175062	255426	Hs.190559	NM_175062	HPRD:15212	RASGEF1C	-	RasGEF domain family, member 1C	protein-coding
19-PTNLD28-TUMOR_peak_40086	chr17	8192202	8192432	+	9.97818	NA	exon (NM_001177801, exon 2 of 4)	exon (NM_001177801, exon 2 of 4)	348	NM_001177801	29098	Hs.408233	NM_016492	HPRD:06407	RANGRF	HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
19-PTNLD28-TUMOR_peak_104912	chr9	100968116	100968317	+	9.97818	NA	intron (NM_001267572, intron 3 of 6)	intron (NM_001267572, intron 3 of 6)	7617	NM_001267572	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_53424	chr2	71974176	71974431	+	9.97818	NA	Intergenic	Intergenic	280471	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_62553	chr20	61640553	61640650	+	9.97818	NA	promoter-TSS (NR_033370)	promoter-TSS (NR_033370)	-134	NR_033370	63930	Hs.640084	NR_033370	HPRD:12773	LOC63930	-	uncharacterized LOC63930	ncRNA
19-PTNLD28-TUMOR_peak_35091	chr15	88798902	88799088	+	9.97818	NA	intron (NR_038229, intron 1 of 3)	intron (NR_038229, intron 1 of 3)	967	NM_001007156	4916	Hs.410969	NM_002530	HPRD:01870	NTRK3	TRKC|gp145(trkC)	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_106996	chrUn_gl000213	26017	26235	+	9.97818	NA	promoter-TSS (NR_107036).2	promoter-TSS (NR_107036).2	-758	NR_107036	102466252		NR_107036		MIR8069-1	MIR8069|hsa-mir-8069	microRNA 8069-1	ncRNA
19-PTNLD28-TUMOR_peak_38396	chr16	68057047	68057370	+	9.97818	NA	5' UTR (NM_018380, exon 1 of 1)	5' UTR (NM_018380, exon 1 of 1)	361	NM_001271762	54920	Hs.534460	NM_017803	HPRD:08624	DUS2	DUS2L|SMM1|URLC8	dihydrouridine synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_74559	chr4	13546644	13546774	+	9.97818	NA	promoter-TSS (NM_001189)	promoter-TSS (NM_001189)	-595	NM_001189	579	Hs.590927	NM_001189	HPRD:09075	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_85837	chr6	20380301	20380599	+	9.97818	NA	Intergenic	Intergenic	-21687	NM_001949	1871	Hs.269408	NM_001949	HPRD:02693	E2F3	E2F-3	E2F transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_39055	chr16	84057363	84057473	+	9.97818	NA	intron (NM_001080442, intron 5 of 9)	AluSz6|SINE|Alu	18344	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38, member 8	protein-coding
19-PTNLD28-TUMOR_peak_52020	chr2	32244041	32244417	+	9.97818	NA	Intergenic	AluSx3|SINE|Alu	-8531	NM_001137602	51072	Hs.444969	NM_015955	HPRD:12814	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
19-PTNLD28-TUMOR_peak_85965	chr6	24485257	24485410	+	9.97818	NA	intron (NM_001503, intron 2 of 24)	intron (NM_001503, intron 2 of 24)	4517	NM_001503	2822	Hs.533291	NM_001503	HPRD:03946	GPLD1	GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD	glycosylphosphatidylinositol specific phospholipase D1	protein-coding
19-PTNLD28-TUMOR_peak_59018	chr2	236579356	236579556	+	9.97184	NA	intron (NM_001037131, intron 1 of 17)	CpG	176723	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_101135	chr8	134423261	134423382	+	9.97184	NA	Intergenic	Intergenic	-113774	NM_006096	10397	Hs.372914	NM_006096	HPRD:05586	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_61748	chr20	48644406	48644629	+	9.97184	NA	Intergenic	Intergenic	13649	NR_051976	100887755	Hs.195705	NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9837	chr1	208137649	208137909	+	9.97184	NA	Intergenic	Intergenic	-53096	NM_001773	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
19-PTNLD28-TUMOR_peak_72269	chr3	170137561	170137856	+	9.97184	NA	intron (NM_005602, intron 1 of 2)	CpG	1055	NM_005602	5010	Hs.31595	NM_005602		CLDN11	OSP|OTM	claudin 11	protein-coding
19-PTNLD28-TUMOR_peak_12017	chr10	11865254	11865473	+	9.97184	NA	promoter-TSS (NM_153256)	promoter-TSS (NM_153256)	-34	NM_153256	254427	Hs.435775	NM_153256	HPRD:10697	PROSER2	C10orf47	proline and serine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_70658	chr3	128565087	128565257	+	9.97184	NA	Intergenic	Intergenic	25212	NR_034179	653712	Hs.653243	NR_034179	ENSG00000231305	LOC653712	-	intraflagellar transport 122 homolog (Chlamydomonas) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_47034	chr19	8286132	8286271	+	9.97184	NA	intron (NM_024552, intron 2 of 11)	MER113|DNA|hAT-Charlie	11984	NM_024552	79603	Hs.515111	NM_024552	HPRD:13962	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
19-PTNLD28-TUMOR_peak_100441	chr8	122654579	122654747	+	9.97184	NA	intron (NR_002835, intron 2 of 3)	intron (NR_002835, intron 2 of 3)	-1033	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_100963	chr8	131278155	131278331	+	9.97184	NA	intron (NM_018482, intron 3 of 29)	L1MEd|LINE|L1	30536	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_98856	chr8	56792167	56792490	+	9.97184	NA	promoter-TSS (NM_002350)	promoter-TSS (NM_002350)	-58	NM_001111097	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_2764	chr1	41131129	41131700	+	9.97184	NA	promoter-TSS (NM_014747)	promoter-TSS (NM_014747)	-90	NM_014747	9783	Hs.654808	NM_014747	HPRD:17976	RIMS3	NIM3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
19-PTNLD28-TUMOR_peak_95763	chr7	139208203	139208477	+	9.97184	NA	promoter-TSS (NM_001080511)	promoter-TSS (NM_001080511)	-334	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2, member L	protein-coding
19-PTNLD28-TUMOR_peak_60007	chr20	17856052	17856187	+	9.97184	NA	Intergenic	Intergenic	87470	NR_003045	692086	Hs.680747	NR_003045		SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
19-PTNLD28-TUMOR_peak_92619	chr7	55086549	55087127	+	9.97184	NA	5' UTR (NM_005228, exon 1 of 28)	5' UTR (NM_005228, exon 1 of 28)	113	NM_005228	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_14322	chr10	75351079	75351256	+	9.97184	NA	Intergenic	Intergenic	-15734	NM_152586	159195	Hs.657355	NM_152586	HPRD:15641	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
19-PTNLD28-TUMOR_peak_33	chr1	534421	534518	+	9.97184	NA	Intergenic	L1MD3|LINE|L1	33324	NR_106781	102465432		NR_106781		MIR6723	hsa-mir-6723	microRNA 6723	ncRNA
19-PTNLD28-TUMOR_peak_10354	chr1	224217267	224217580	+	9.97184	NA	Intergenic	Intergenic	-84366	NR_049764	23219	Hs.64691	NM_015176	HPRD:12367	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
19-PTNLD28-TUMOR_peak_96516	chr7	153099484	153099772	+	9.97184	NA	intron (NR_125776, intron 3 of 3)	intron (NR_125776, intron 3 of 3)	9691	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_24771	chr12	57850044	57850160	+	9.97184	NA	exon (NM_031479, exon 2 of 2)	exon (NM_031479, exon 2 of 2)	1006	NM_031479	83729	Hs.632713	NM_031479	HPRD:11047	INHBE	-	inhibin, beta E	protein-coding
19-PTNLD28-TUMOR_peak_71463	chr3	143691206	143691541	+	9.97016	NA	promoter-TSS (NM_001134470)	promoter-TSS (NM_001134470)	733	NM_173552	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_44483	chr18	9135948	9136052	+	9.96834	NA	promoter-TSS (NM_015208)	promoter-TSS (NM_015208)	718	NR_110772	101927275	Hs.656442	NR_110771		NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_17996	chr11	34380636	34380761	+	9.96674	NA	Intergenic	CpG	-1143	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89772	chr6	143265726	143265879	+	9.96674	NA	intron (NM_006734, intron 1 of 9)	CpG	536	NM_006734	3097	Hs.510172	NM_006734	HPRD:00881	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_7722	chr1	161696962	161697241	+	9.96399	NA	exon (NM_001288831, exon 6 of 6)	exon (NM_001288831, exon 6 of 6)	4658	NM_001288829	127943	Hs.517422	NM_001002901	HPRD:08093	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FcRY	Fc receptor-like B	protein-coding
19-PTNLD28-TUMOR_peak_37196	chr16	30064172	30064620	+	9.96399	NA	promoter-TSS (NM_000034)	promoter-TSS (NM_000034)	-15	NM_000034	226	Hs.513490	NM_000034	HPRD:00070	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase A, fructose-bisphosphate	protein-coding
19-PTNLD28-TUMOR_peak_64022	chr21	46548633	46548771	+	9.96399	NA	intron (NR_027674, intron 2 of 11)	intron (NR_027674, intron 2 of 11)	54209	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_98059	chr8	30892238	30892388	+	9.95944	NA	intron (NM_000553, intron 1 of 34)	LTR56|LTR|ERV1	-1082	NM_001015508	29942	Hs.373778	NM_013357	HPRD:17933	PURG	PURG-A|PURG-B	purine-rich element binding protein G	protein-coding
19-PTNLD28-TUMOR_peak_105993	chr9	126105834	126106189	+	9.95944	NA	Intergenic	Intergenic	-12435	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_97249	chr8	12611525	12611629	+	9.95944	NA	intron (NM_152271, intron 1 of 11)	intron (NM_152271, intron 1 of 11)	1415	NM_152271	91694	Hs.180178	NM_152271	HPRD:08674	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
19-PTNLD28-TUMOR_peak_43448	chr17	73599635	73599808	+	9.95944	NA	intron (NR_003587, intron 17 of 60)	intron (NR_003587, intron 17 of 60)	15582	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1624	chr1	26147046	26147389	+	9.95944	NA	promoter-TSS (NM_001099626)	promoter-TSS (NM_001099626)	-102	NM_001099626	56181	Hs.149305	NM_019557	HPRD:14248	MTFR1L	FAM54B|MST116|MSTP116	mitochondrial fission regulator 1-like	protein-coding
19-PTNLD28-TUMOR_peak_66545	chr3	10553970	10554084	+	9.95896	NA	Intergenic	Intergenic	-6759	NM_001683	491	Hs.268942	NM_001683	HPRD:00160	ATP2B2	PMCA2|PMCA2a|PMCA2i	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
19-PTNLD28-TUMOR_peak_11936	chr10	7708545	7708656	+	9.95896	NA	intron (NM_001001851, intron 1 of 11)	intron (NM_001001851, intron 1 of 11)	361	NM_030569	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_54110	chr2	91954561	91954691	+	9.95896	NA	Intergenic	L2|LINE|L2	-8742	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52273	chr2	39795788	39795919	+	9.95896	NA	intron (NR_037875, intron 5 of 5)	intron (NR_037875, intron 5 of 5)	-96785	NM_001167959	130733	Hs.40808	NM_152390	HPRD:14577	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
19-PTNLD28-TUMOR_peak_81829	chr5	123143053	123143158	+	9.95896	NA	Intergenic	Intergenic	261994	NM_004384	1456	Hs.129206	NM_004384	HPRD:05034	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
19-PTNLD28-TUMOR_peak_76317	chr4	96111925	96112109	+	9.95896	NA	intron (NM_003728, intron 12 of 15)	intron (NM_003728, intron 12 of 15)	99375	NM_001256794	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_66763	chr3	13707272	13707517	+	9.95896	NA	intron (NR_027103, intron 1 of 5)	intron (NR_027103, intron 1 of 5)	15173	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
19-PTNLD28-TUMOR_peak_61539	chr20	46402938	46403107	+	9.95896	NA	intron (NM_198596, intron 1 of 20)	intron (NM_198596, intron 1 of 20)	11786	NM_018837	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_86681	chr6	31887773	31887942	+	9.95896	NA	intron (NM_001178063, intron 1 of 13).3	intron (NM_001178063, intron 1 of 13).3	-7397	NM_001282458	717	Hs.408903	NM_000063	HPRD:08939	C2	ARMD14|CO2	complement component 2	protein-coding
19-PTNLD28-TUMOR_peak_25194	chr12	69491917	69492039	+	9.95896	NA	Intergenic	Intergenic	-134958	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_26193	chr12	109729289	109729607	+	9.95896	NA	intron (NM_213596, intron 2 of 9)	intron (NM_213596, intron 2 of 9)	17577	NM_213596	121643	Hs.528316	NM_213596	HPRD:13550	FOXN4	-	forkhead box N4	protein-coding
19-PTNLD28-TUMOR_peak_41356	chr17	38296643	38296836	+	9.95896	NA	5' UTR (NM_007359, exon 1 of 14)	5' UTR (NM_007359, exon 1 of 14)	232	NM_007359	22794	Hs.743287	NM_007359	HPRD:16225	CASC3	BTZ|MLN51	cancer susceptibility candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_25972	chr12	105704164	105704494	+	9.95896	NA	Intergenic	HERVK11-int|LTR|ERVK	-20085	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_38052	chr16	57559716	57559998	+	9.95896	NA	exon (NM_033212, exon 3 of 9)	exon (NM_033212, exon 3 of 9)	10620	NM_033212	92922	Hs.644611	NM_033212	HPRD:14408	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
19-PTNLD28-TUMOR_peak_103627	chr9	70469148	70469289	+	9.95896	NA	intron (NM_001024916, intron 6 of 12)	L2a|LINE|L2	20993	NM_001024916	220869	Hs.355950	NM_001024916	HPRD:14134	CBWD5	DC36	COBW domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_101989	chr9	3137053	3137245	+	9.95408	NA	Intergenic	Intergenic	-44440	NR_121585	101929247	Hs.547178	NR_121585		LINC01231	-	long intergenic non-protein coding RNA 1231	ncRNA
19-PTNLD28-TUMOR_peak_69581	chr3	107307054	107307391	+	9.95408	NA	intron (NM_001276286, intron 2 of 16)	intron (NM_001276286, intron 2 of 16)	65439	NM_001276286	56987	Hs.124366	NM_020235	HPRD:10688	BBX	ARTC1|HBP2|HSPC339|MDS001	bobby sox homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_67774	chr3	43795237	43795555	+	9.95408	NA	Intergenic	Intergenic	63021	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_82405	chr5	136965375	136965495	+	9.95408	NA	intron (NM_001257194, intron 12 of 14)	intron (NM_001257194, intron 12 of 14)	17903	NR_030588	100126343		NR_030588		MIR874	MIRN874|hsa-mir-874	microRNA 874	ncRNA
19-PTNLD28-TUMOR_peak_50913	chr2	8453219	8453422	+	9.95408	NA	intron (NR_034135, intron 2 of 8)	MLT1A|LTR|ERVL-MaLR	15229	NR_034135	339789	Hs.565619	NM_207358	HPRD:14171	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
19-PTNLD28-TUMOR_peak_52703	chr2	48687190	48687399	+	9.95408	NA	intron (NR_024188, intron 6 of 21)	intron (NR_024188, intron 6 of 21)	19386	NR_024188	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_53114	chr2	65140512	65140882	+	9.95408	NA	intron (NR_036586, intron 1 of 2)	intron (NR_036586, intron 1 of 2)	18884	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	ncRNA
19-PTNLD28-TUMOR_peak_40044	chr17	7983342	7983550	+	9.95408	NA	intron (NM_001139, intron 6 of 14)	CpG-10128	7575	NM_001139	242	Hs.136574	NM_001139	HPRD:04772	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
19-PTNLD28-TUMOR_peak_86035	chr6	25230071	25230183	+	9.95408	NA	Intergenic	Intergenic	31508	NR_110862	101928663	Hs.561600	NR_110862		LOC101928663	-	uncharacterized LOC101928663	ncRNA
19-PTNLD28-TUMOR_peak_85393	chr6	12001454	12001705	+	9.95408	NA	Intergenic	Intergenic	-11145	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_65177	chr22	32348535	32348732	+	9.95408	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-7297	NM_015372	25775	Hs.627602	NM_015372	ENSG00000128254	C22orf24	HSN44A4A	chromosome 22 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_71548	chr3	147431731	147432015	+	9.95408	NA	Intergenic	Intergenic	292759	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_43179	chr17	68654419	68654659	+	9.95408	NA	Intergenic	Intergenic	488863	NM_000891	3759	Hs.1547	NM_000891	HPRD:02815	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
19-PTNLD28-TUMOR_peak_108360	chrX	52638106	52638232	+	9.95408	NA	Intergenic	Intergenic	-13816	NR_027250	280659	Hs.694472	NM_174961	HPRD:06728	SSX8	-	synovial sarcoma, X breakpoint 8	pseudo
19-PTNLD28-TUMOR_peak_15905	chr10	120501568	120501742	+	9.95408	NA	intron (NM_153810, intron 1 of 8)	intron (NM_153810, intron 1 of 8)	13103	NM_153810	143384	Hs.420024	NM_153810	HPRD:12576	CACUL1	C10orf46|CAC1	CDK2-associated, cullin domain 1	protein-coding
19-PTNLD28-TUMOR_peak_32796	chr15	30337973	30338201	+	9.95408	NA	Intergenic	Intergenic	-37071	NM_001282472	653073	Hs.574257	NM_001282472		GOLGA8J	-	golgin A8 family, member J	protein-coding
19-PTNLD28-TUMOR_peak_69378	chr3	98504010	98504121	+	9.95408	NA	intron (NM_001271145, intron 6 of 9)	L2a|LINE|L2	52517	NM_006100	10402	Hs.148716	NM_006100	HPRD:06195	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_55160	chr2	115309036	115309162	+	9.95408	NA	intron (NM_001178036, intron 2 of 26)	intron (NM_001178036, intron 2 of 26)	89919	NM_001178036	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_69116	chr3	75244142	75244333	+	9.95408	NA	Intergenic	LTR35B|LTR|ERV1	-19390	NR_049831	100846999		NR_049831		MIR4444-2	-	microRNA 4444-2	ncRNA
19-PTNLD28-TUMOR_peak_105124	chr9	107878259	107878508	+	9.95408	NA	Intergenic	Intergenic	-128511	NM_080546	23446	Hs.573495	NM_022109	HPRD:16197	SLC44A1	CD92|CDW92|CHTL1|CTL1	solute carrier family 44 (choline transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_33363	chr15	44251074	44251513	+	9.95408	NA	intron (NR_104455, intron 1 of 14)	intron (NR_104455, intron 1 of 14)	-80924	NR_003571	728758	Hs.658099	NR_003571		PIN4P1	-	protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_80156	chr5	60541423	60541558	+	9.95408	NA	Intergenic	Intergenic	-83188	NM_001048249	643155	Hs.508479	NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
19-PTNLD28-TUMOR_peak_4144	chr1	66634129	66634250	+	9.95408	NA	intron (NM_001037340, intron 1 of 14)	L2a|LINE|L2	-117788	NR_123718	101927139	Hs.127908	NR_123718		LOC101927139	-	uncharacterized LOC101927139	ncRNA
19-PTNLD28-TUMOR_peak_109141	chrX	109040652	109040762	+	9.95408	NA	Intergenic	Intergenic	-64086	NM_004458	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_1605	chr1	25698370	25698493	+	9.95408	NA	intron (NM_138617, intron 5 of 6)	intron (NM_138617, intron 5 of 6)	33642	NM_014313	23585	Hs.705699	NM_014313	HPRD:05636	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
19-PTNLD28-TUMOR_peak_81956	chr5	126632198	126632322	+	9.95408	NA	intron (NM_001256545, intron 1 of 24)	intron (NM_001256545, intron 1 of 24)	5804	NM_032446	84466	Hs.438709	NM_032446	HPRD:14384	MEGF10	EMARDD	multiple EGF-like-domains 10	protein-coding
19-PTNLD28-TUMOR_peak_69656	chr3	108842680	108842847	+	9.95408	NA	Intergenic	SVA_D|Other|Other	-5770	NM_014429	27136	Hs.591296	NM_014429	HPRD:04439	MORC1	CT33|MORC|ZCW6	MORC family CW-type zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_61405	chr20	44831036	44831137	+	9.95387	NA	intron (NM_021248, intron 7 of 11)	AluY|SINE|Alu	84180	NM_152854	958	Hs.472860	NM_001250	HPRD:00178	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule, TNF receptor superfamily member 5	protein-coding
19-PTNLD28-TUMOR_peak_1810	chr1	27986239	27986384	+	9.95365	NA	Intergenic	CpG	12413	NM_022872	2537	Hs.523847	NM_002038	HPRD:00959	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon, alpha-inducible protein 6	protein-coding
19-PTNLD28-TUMOR_peak_88545	chr6	83780909	83781002	+	9.95217	NA	intron (NM_015018, intron 1 of 38)	AluSx1|SINE|Alu	3570	NM_001199942	23033	Hs.520246	NM_015018	HPRD:10022	DOPEY1	KIAA1117|dJ202D23.2	dopey family member 1	protein-coding
19-PTNLD28-TUMOR_peak_13942	chr10	68595220	68595462	+	9.95217	NA	intron (NM_013266, intron 7 of 17)	intron (NM_013266, intron 7 of 17)	-90451	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_86409	chr6	29855191	29855532	+	9.95217	NA	promoter-TSS (NR_001434).5	promoter-TSS (NR_001434).5	-176	NR_001434	3136	Hs.728808	NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_93507	chr7	76147431	76147813	+	9.95217	NA	intron (NM_030570, intron 4 of 4)	intron (NM_030570, intron 4 of 4)	7882	NM_182683	80761	Hs.488861	NM_030570	HPRD:15626	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
19-PTNLD28-TUMOR_peak_8633	chr1	181360734	181360891	+	9.95217	NA	Intergenic	LTR33A|LTR|ERVL	-91874	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_49656	chr19	48448003	48448132	+	9.95098	NA	promoter-TSS (NR_024216).2	promoter-TSS (NR_024216).2	-112	NR_024216	100169959	Hs.723093	NR_024216		SNAR-A13	-	small ILF3/NF90-associated RNA A13	snRNA
19-PTNLD28-TUMOR_peak_48823	chr19	37808115	37808232	+	9.94839	NA	Intergenic	AluYc3|SINE|Alu	-17407	NM_181786	284459	Hs.657027	NM_181786	HPRD:01314	HKR1	ZNF875	HKR1, GLI-Kruppel zinc finger family member	protein-coding
19-PTNLD28-TUMOR_peak_6041	chr1	120858730	120858854	+	9.94794	NA	Intergenic	Intergenic	19787	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_26122	chr12	108584399	108584543	+	9.94296	NA	intron (NM_014653, intron 1 of 8)	intron (NM_014653, intron 1 of 8)	60960	NM_014653	9671	Hs.143591	NM_014653	HPRD:17196	WSCD2	-	WSC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_43345	chr17	72787682	72787868	+	9.94296	NA	intron (NM_017728, intron 6 of 9)	intron (NM_017728, intron 6 of 9)	15153	NM_017728	54868	Hs.370262	NM_017728	HPRD:07888	TMEM104	-	transmembrane protein 104	protein-coding
19-PTNLD28-TUMOR_peak_88509	chr6	82579394	82579742	+	9.94296	NA	Intergenic	L1PA7|LINE|L1	-117140	NM_017633	55603	Hs.10784	NM_017633	HPRD:13311	FAM46A	C6orf37|XTP11	family with sequence similarity 46, member A	protein-coding
19-PTNLD28-TUMOR_peak_61186	chr20	42187239	42187395	+	9.94296	NA	promoter-TSS (NM_170693)	promoter-TSS (NM_170693)	-318	NM_170693	10110	Hs.300863	NM_016276	HPRD:06348	SGK2	H-SGK2|dJ138B7.2	serum/glucocorticoid regulated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_41622	chr17	41488308	41488453	+	9.94296	NA	Intergenic	Intergenic	12027	NM_001661	379	Hs.183153	NM_001661	HPRD:02842	ARL4D	ARF4L|ARL6	ADP-ribosylation factor-like 4D	protein-coding
19-PTNLD28-TUMOR_peak_32037	chr14	100508813	100508923	+	9.94296	NA	Intergenic	Intergenic	-22883	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_74173	chr4	6540426	6540656	+	9.94296	NA	intron (NM_001206994, intron 1 of 9)	intron (NM_001206994, intron 1 of 9)	16864	NM_001206995	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_32487	chr15	21197079	21197300	+	9.94296	NA	non-coding (NR_040094, exon 5 of 5)	non-coding (NR_040094, exon 5 of 5)	51422	NR_040094	348120	Hs.116287	NR_040094	ENSG00000258710	LINC01193	CT60	long intergenic non-protein coding RNA 1193	ncRNA
19-PTNLD28-TUMOR_peak_79816	chr5	50947835	50947953	+	9.94296	NA	Intergenic	Intergenic	-268728	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
19-PTNLD28-TUMOR_peak_17285	chr11	13022435	13022561	+	9.94296	NA	Intergenic	Intergenic	-8472	NM_001080521	644943	Hs.134650	NM_001080521		RASSF10	-	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
19-PTNLD28-TUMOR_peak_78687	chr5	1576015	1576108	+	9.94296	NA	intron (NR_003263, intron 5 of 6)	intron (NR_003263, intron 5 of 6)	18585	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_26487	chr12	117029739	117030264	+	9.94296	NA	Intergenic	Intergenic	32815	NM_001085481	643246	Hs.506947	NM_001085481	ENSG00000171471	MAP1LC3B2	ATG8G	microtubule-associated protein 1 light chain 3 beta 2	protein-coding
19-PTNLD28-TUMOR_peak_5301	chr1	108709889	108710002	+	9.94296	NA	intron (NM_013386, intron 3 of 9)	L1PA3|LINE|L1	25486	NM_213651	29957	Hs.656870	NM_013386	HPRD:12290	SLC25A24	APC1|SCAMC-1	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	protein-coding
19-PTNLD28-TUMOR_peak_29010	chr13	109814653	109814796	+	9.94296	NA	intron (NM_015011, intron 32 of 34)	intron (NM_015011, intron 32 of 34)	4927	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_47184	chr19	10329372	10329575	+	9.94296	NA	Intergenic	AluJb|SINE|Alu	-11616	NR_036206	100422925		NR_036206	miRBase:MI0015851	MIR4322	-	microRNA 4322	ncRNA
19-PTNLD28-TUMOR_peak_101942	chr9	1232605	1232819	+	9.94296	NA	Intergenic	Intergenic	182092	NM_181872	10655	Hs.59506	NM_006557	HPRD:16079	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_38383	chr16	67917686	67917855	+	9.94296	NA	intron (NM_014329, intron 28 of 28)	intron (NM_014329, intron 28 of 28)	-1011	NM_198443	123904	Hs.435464	NM_198443	HPRD:18261	NRN1L	UNQ2446	neuritin 1-like	protein-coding
19-PTNLD28-TUMOR_peak_42530	chr17	56004800	56004930	+	9.94296	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-24115	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_102740	chr9	33770484	33770746	+	9.94296	NA	intron (NM_001197098, intron 1 of 4)	MLT1B|LTR|ERVL-MaLR	19796	NM_001197098	5646	Hs.654513	NM_002771	HPRD:06685	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	protease, serine, 3	protein-coding
19-PTNLD28-TUMOR_peak_109875	chrX	152760516	152760772	+	9.93830	NA	intron (NM_001711, intron 1 of 7)	intron (NM_001711, intron 1 of 7)	297	NM_001711	633	Hs.821	NM_001711	HPRD:02359	BGN	DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding
19-PTNLD28-TUMOR_peak_103296	chr9	44866664	44866883	+	9.93830	NA	Intergenic	CpG	-123463	NR_027421	100132948	Hs.645763	NM_001024942	ENSG00000154537	FAM27C	FAM27A|FAM27A1|FAM27A3	family with sequence similarity 27, member C	ncRNA
19-PTNLD28-TUMOR_peak_28829	chr13	99853715	99853931	+	9.93830	NA	promoter-TSS (NR_036532)	promoter-TSS (NR_036532)	660	NM_177967	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_30996	chr14	69402580	69402807	+	9.93830	NA	intron (NM_001102, intron 1 of 20)	MIR3|SINE|MIR	43390	NM_001130004	87	Hs.509765	NM_001102	HPRD:00020	ACTN1	BDPLT15	actinin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_70976	chr3	134044656	134044835	+	9.93802	NA	Intergenic	Intergenic	41959	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
19-PTNLD28-TUMOR_peak_3025	chr1	44043452	44043615	+	9.93802	NA	intron (NM_130440, intron 6 of 32)	intron (NM_130440, intron 6 of 32)	46986	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_60290	chr20	25057313	25057807	+	9.93575	NA	intron (NM_014588, intron 4 of 4)	intron (NM_014588, intron 4 of 4)	5455	NM_001256272	30813	Hs.274264	NM_014588	HPRD:09232	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_39955	chr17	7166522	7166646	+	9.93575	NA	promoter-TSS (NM_001185023)	promoter-TSS (NM_001185023)	-72	NM_001185022	1366	Hs.513915	NM_001307	HPRD:07633	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
19-PTNLD28-TUMOR_peak_77683	chr4	154154010	154154116	+	9.93575	NA	intron (NM_015271, intron 1 of 11)	intron (NM_015271, intron 1 of 11)	28465	NM_015271	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45709	chr18	47653969	47654200	+	9.93513	NA	intron (NM_001080467, intron 1 of 39)	MLT2B4|LTR|ERVL	-1151	NR_036204	100422865		NR_036204		MIR4320	-	microRNA 4320	ncRNA
19-PTNLD28-TUMOR_peak_57859	chr2	203014129	203014433	+	9.93513	NA	intron (NM_001277372, intron 13 of 21)	intron (NM_001277372, intron 13 of 21)	76303	NM_001277372	100652824	Hs.686898	NM_001080445		LOC100652824	-	uncharacterized protein KIAA2012	protein-coding
19-PTNLD28-TUMOR_peak_20231	chr11	77850131	77850299	+	9.93513	NA	promoter-TSS (NR_102281)	promoter-TSS (NR_102281)	484	NM_024079	79053	Hs.503368	NM_024079	HPRD:10480	ALG8	CDG1H	ALG8, alpha-1,3-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_33749	chr15	58838941	58839127	+	9.93513	NA	intron (NM_000236, intron 5 of 8)	intron (NM_000236, intron 5 of 8)	-48100	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_59317	chr2	242577001	242577125	+	9.93513	NA	promoter-TSS (NM_178326)	promoter-TSS (NM_178326)	36	NM_178326	23192	Hs.283610	NM_013325	HPRD:16499	ATG4B	APG4B|AUTL1	autophagy related 4B, cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_84916	chr6	3628454	3628677	+	9.93513	NA	Intergenic	Intergenic	123681	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97034	chr8	8174038	8174236	+	9.93237	NA	Intergenic	Intergenic	65207	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_52601	chr2	47031339	47031640	+	9.93237	NA	Intergenic	Intergenic	-12318	NR_034099	388948	Hs.728895	NR_034099	ENSG00000222005	LINC01118	-	long intergenic non-protein coding RNA 1118	ncRNA
19-PTNLD28-TUMOR_peak_34480	chr15	74615054	74615188	+	9.93237	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	4239	NM_001287181	80125	Hs.383206	NM_025055	HPRD:09959	CCDC33	CT61	coiled-coil domain containing 33	protein-coding
19-PTNLD28-TUMOR_peak_100948	chr8	131095282	131095445	+	9.93237	NA	non-coding (NR_045385, exon 1 of 1)	non-coding (NR_045385, exon 1 of 1)	1651	NR_045385	100507117	Hs.106015	NR_045385		ASAP1-IT2	-	ASAP1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_55332	chr2	121020489	121020607	+	9.93237	NA	intron (NM_002881, intron 1 of 4)	MIR3|SINE|MIR	10134	NM_002881	5899	Hs.469820	NM_002881	HPRD:01550	RALB	-	v-ral simian leukemia viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_40715	chr17	25538464	25538622	+	9.93237	NA	Intergenic	SVA_E|Other|Other	82479	NR_039748	100616277		NR_039748	miRBase:MI0016889	MIR4522	-	microRNA 4522	ncRNA
19-PTNLD28-TUMOR_peak_45743	chr18	48086322	48086675	+	9.93237	NA	promoter-TSS (NM_002747)	promoter-TSS (NM_002747)	14	NM_001292039	5596	Hs.433728	NM_002747	HPRD:01497	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_18648	chr11	57244403	57244605	+	9.93237	NA	3' UTR (NM_178570, exon 3 of 3)	3' UTR (NM_178570, exon 3 of 3)	16494	NM_178570	349667	Hs.502618	NM_178570		RTN4RL2	NGRH1|NgR2	reticulon 4 receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_100805	chr8	128602718	128602903	+	9.93237	NA	Intergenic	Intergenic	-108426	NR_117100	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11172	chr1	236849528	236850030	+	9.93237	NA	promoter-TSS (NM_001278343)	promoter-TSS (NM_001278343)	25	NM_001103	88	Hs.498178	NM_001103	HPRD:00019	ACTN2	CMD1AA	actinin, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_34629	chr15	77197384	77197852	+	9.93237	NA	Intergenic	CpG	-21401	NM_020843	49855	Hs.458986	NM_020843	HPRD:11704	SCAPER	ZNF291|Zfp291	S-phase cyclin A-associated protein in the ER	protein-coding
19-PTNLD28-TUMOR_peak_48982	chr19	39636229	39636536	+	9.93237	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	19962	NM_001014832	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_105243	chr9	111034871	111035091	+	9.93237	NA	Intergenic	Intergenic	583294	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_6518	chr1	147860206	147860439	+	9.93013	NA	promoter-TSS (NR_106967)	promoter-TSS (NR_106967)	-112	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_4345	chr1	72749307	72749772	+	9.92943	NA	Intergenic	CpG	-1262	NM_173808	257194	Hs.146542	NM_173808		NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_100009	chr8	107216421	107216547	+	9.92943	NA	Intergenic	Intergenic	-65922	NM_018002	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_2524	chr1	38100267	38100689	+	9.92943	NA	5' UTR (NM_001242908, exon 1 of 8)	5' UTR (NM_001242908, exon 1 of 8)	117	NM_001242910	284654	Hs.135015	NM_173640	HPRD:08288	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
19-PTNLD28-TUMOR_peak_19571	chr11	67913694	67913886	+	9.92943	NA	Intergenic	Intergenic	-24932	NM_001277	1119	Hs.77221	NM_001277	HPRD:00327	CHKA	CHK|CK|CKI|EK	choline kinase alpha	protein-coding
19-PTNLD28-TUMOR_peak_46941	chr19	6866875	6867147	+	9.92914	NA	Intergenic	LTR8|LTR|ERV1	-20549	NM_001256254	2015	Hs.2375	NM_001974	HPRD:02733	EMR1	TM7LN3	egf-like module containing, mucin-like, hormone receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_90077	chr6	152126517	152127043	+	9.92914	NA	promoter-TSS (NM_001291241)	promoter-TSS (NM_001291241)	-28	NM_001291230	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_82444	chr5	137688156	137688298	+	9.92914	NA	promoter-TSS (NM_016604)	promoter-TSS (NM_016604)	-58	NM_016604	51780	Hs.483486	NM_016604	HPRD:11055	KDM3B	5qNCA|C5orf7|JMJD1B|NET22	lysine (K)-specific demethylase 3B	protein-coding
19-PTNLD28-TUMOR_peak_41464	chr17	39819018	39819260	+	9.92914	NA	Intergenic	Intergenic	-22688	NR_033415	284116	Hs.725790	NR_033415	ENSG00000214514	KRT42P	-	keratin 42 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_33300	chr15	42783825	42784018	+	9.92914	NA	promoter-TSS (NM_001284307)	promoter-TSS (NM_001284307)	-526	NM_001284307	64397	Hs.511143	NM_022473	HPRD:10317	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
19-PTNLD28-TUMOR_peak_100534	chr8	124553477	124553648	+	9.92775	NA	promoter-TSS (NM_058229)	promoter-TSS (NM_058229)	-69	NM_001242463	114907	Hs.403933	NM_058229	HPRD:05966	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
19-PTNLD28-TUMOR_peak_40019	chr17	7745856	7746141	+	9.92775	NA	intron (NM_001080424, intron 1 of 21)	CpG	2763	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
19-PTNLD28-TUMOR_peak_53073	chr2	64681680	64681868	+	9.92754	NA	intron (NM_014181, intron 1 of 4)	CpG	447	NM_014181	29094	Hs.372208	NM_014181	HPRD:13708	LGALSL	GRP	lectin, galactoside-binding-like	protein-coding
19-PTNLD28-TUMOR_peak_24103	chr12	49454016	49454474	+	9.92754	NA	Intergenic	CpG	-5138	NM_003482	8085	Hs.731384	NM_003482	HPRD:03664	KMT2D	AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine (K)-specific methyltransferase 2D	protein-coding
19-PTNLD28-TUMOR_peak_10601	chr1	228248105	228248391	+	9.92206	NA	3' UTR (NM_033131, exon 4 of 4)	3' UTR (NM_033131, exon 4 of 4)	-22113	NM_001658	375	Hs.286221	NM_001658	HPRD:00054	ARF1	-	ADP-ribosylation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_60580	chr20	32251470	32251615	+	9.92206	NA	exon (NM_080825, exon 2 of 2)	exon (NM_080825, exon 2 of 2)	1450	NM_080825	128864	Hs.324104	NM_080825	HPRD:12749	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
19-PTNLD28-TUMOR_peak_73921	chr4	2747931	2748141	+	9.91816	NA	intron (NM_024309, intron 2 of 5)	intron (NM_024309, intron 2 of 5)	9716	NM_001161527	79155	Hs.368551	NM_024309	HPRD:18207	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_64315	chr22	18955279	18955446	+	9.91816	NA	Intergenic	Intergenic	-2649	NR_045121	26220	Hs.646438	NR_002733		DGCR5	LINC00037|NCRNA00037	DiGeorge syndrome critical region gene 5 (non-protein coding)	pseudo
19-PTNLD28-TUMOR_peak_108035	chrX	41331198	41331318	+	9.91816	NA	intron (NM_022567, intron 1 of 1)	intron (NM_022567, intron 1 of 1)	24545	NM_022567	60506	Hs.302019	NM_022567	HPRD:02232	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
19-PTNLD28-TUMOR_peak_9764	chr1	206757092	206757207	+	9.91816	NA	intron (NM_182663, intron 3 of 5)	intron (NM_182663, intron 3 of 5)	26657	NM_182665	83593	Hs.497579	NM_031437	HPRD:06117	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_23619	chr12	31256740	31257326	+	9.91816	NA	3' UTR (NM_004399, exon 26 of 26)	3' UTR (NM_004399, exon 26 of 26)	-30252	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	-	DDX11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42227	chr17	48398842	48399008	+	9.91816	NA	Intergenic	HERV16-int|LTR|ERVL	-24468	NR_110010	64132	Hs.463416	NM_022167	HPRD:16286	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
19-PTNLD28-TUMOR_peak_45495	chr18	43854308	43854480	+	9.91816	NA	Intergenic	Intergenic	-59793	NM_152470	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_68078	chr3	48884865	48885237	+	9.91816	NA	promoter-TSS (NR_109996)	promoter-TSS (NR_109996)	219	NM_004157	5576	Hs.631923	NM_004157	HPRD:01484	PRKAR2A	PKR2|PRKAR2	protein kinase, cAMP-dependent, regulatory, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_65369	chr22	37266424	37266563	+	9.91816	NA	exon (NM_000631, exon 5 of 10)	exon (NM_000631, exon 5 of 10)	9463	NM_000631	4689	Hs.474781	NM_000631	HPRD:03289	NCF4	NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_58317	chr2	217547313	217547501	+	9.91816	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	12865	NM_000599	3488	Hs.607212	NM_000599	HPRD:00901	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_91698	chr7	25894699	25894848	+	9.91816	NA	Intergenic	Intergenic	-14143	NR_046486	100873753		NR_046486		RNU6-16P	RNU6-16	RNA, U6 small nuclear 16, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_7251	chr1	155959311	155959404	+	9.91816	NA	Intergenic	Intergenic	-11021	NM_001162384	9181	Hs.743352	NM_004723	HPRD:10458	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|P40	Rho/Rac guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_8774	chr1	183605277	183605466	+	9.91549	NA	promoter-TSS (NM_005717)	promoter-TSS (NM_005717)	189	NM_001297670	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
19-PTNLD28-TUMOR_peak_35648	chr16	761834	761986	+	9.91153	NA	Intergenic	Intergenic	-3263	NM_024042	79006	Hs.533772	NM_024042		METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
19-PTNLD28-TUMOR_peak_106437	chr9	133320967	133321192	+	9.90869	NA	intron (NM_054012, intron 1 of 14)	intron (NM_054012, intron 1 of 14)	985	NM_000050	445	Hs.160786	NM_000050	HPRD:04590	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_50800	chr2	1631749	1631984	+	9.90869	NA	Intergenic	Intergenic	116453	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_16655	chr11	2411383	2411622	+	9.90835	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-10216	NM_001297661	10078	Hs.523424	NM_005706	HPRD:10357	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
19-PTNLD28-TUMOR_peak_29	chr1	460497	460677	+	9.90835	NA	Intergenic	MER4D1|LTR|ERV1	92928	NM_001005277	81399	Hs.632360	NM_001005277	HPRD:14969	OR4F16	OR1-1|OR7-21	olfactory receptor, family 4, subfamily F, member 16	protein-coding
19-PTNLD28-TUMOR_peak_84630	chr5	180888554	180888734	+	9.90835	NA	Intergenic	MER4D1|LTR|ERV1	94356	NM_001005221	729759	Hs.632360	NM_001005221	HPRD:14971	OR4F29	OR7-21	olfactory receptor, family 4, subfamily F, member 29	protein-coding
19-PTNLD28-TUMOR_peak_68042	chr3	48468979	48469192	+	9.90807	NA	intron (NM_001130082, intron 1 of 37)	intron (NM_001130082, intron 1 of 37)	1787	NM_002673	5364	Hs.476209	NM_002673	HPRD:03032	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
19-PTNLD28-TUMOR_peak_53009	chr2	62684394	62684555	+	9.90741	NA	Intergenic	CpG	49130	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_92285	chr7	44473770	44474056	+	9.90741	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	56472	NM_015332	23386	Hs.488171	NM_015332		NUDCD3	NudCL	NudC domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_44024	chr17	79868750	79869018	+	9.90741	NA	TTS (NM_016538)	TTS (NM_016538)	231	NM_001282203	5833	Hs.569843	NM_002861		PCYT2	ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
19-PTNLD28-TUMOR_peak_66688	chr3	12793236	12793360	+	9.90488	NA	intron (NM_001284406, intron 1 of 11)	intron (NM_001284406, intron 1 of 11)	7510	NM_001284407	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_25675	chr12	96021957	96022167	+	9.90488	NA	Intergenic	MER66B|LTR|ERV1	-20969	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_65632	chr22	40895241	40895410	+	9.90488	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-22479	NR_109965	101927257	Hs.662725	NR_109965	ENSG00000232564	LOC101927257	-	uncharacterized LOC101927257	ncRNA
19-PTNLD28-TUMOR_peak_39459	chr16	89516160	89516598	+	9.90488	NA	intron (NR_110931, intron 2 of 2)	intron (NR_110931, intron 2 of 2)	19053	NR_110931	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
19-PTNLD28-TUMOR_peak_43870	chr17	78121505	78121689	+	9.90482	NA	promoter-TSS (NM_014740)	promoter-TSS (NM_014740)	-615	NM_014740	9775	Hs.389649	NM_014740	HPRD:06482	EIF4A3	DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
19-PTNLD28-TUMOR_peak_4973	chr1	94374305	94374611	+	9.90097	NA	intron (NM_002061, intron 1 of 6)	CpG	554	NM_002061	2730	Hs.315562	NM_002061		GCLM	GLCLR	glutamate-cysteine ligase, modifier subunit	protein-coding
19-PTNLD28-TUMOR_peak_50874	chr2	7006172	7006558	+	9.90097	NA	promoter-TSS (NM_207315)	promoter-TSS (NM_207315)	401	NR_046236	129607	Hs.7155	NM_207315	HPRD:11233	CMPK2	TMPK2|TYKi|UMP-CMPK2	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_44499	chr18	9613609	9613842	+	9.90097	NA	intron (NM_001042388, intron 2 of 19)	intron (NM_001042388, intron 2 of 19)	880	NM_005134	9989	Hs.743236	NM_005134	ENSG00000154845	PPP4R1	MEG1|PP4(Rmeg)|PP4R1	protein phosphatase 4, regulatory subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_60234	chr20	23965128	23965472	+	9.89822	NA	TTS (NM_178311)	TTS (NM_178311)	2212	NM_178312	92086	Hs.355394	NM_080920	HPRD:17037	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
19-PTNLD28-TUMOR_peak_87540	chr6	42870185	42870316	+	9.89822	NA	Intergenic	HERVK-int|LTR|ERVK	-11696	NM_001008739	441150	Hs.571098	NM_001008739	HPRD:17403	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
19-PTNLD28-TUMOR_peak_106359	chr9	132221693	132221872	+	9.89822	NA	Intergenic	Intergenic	-29157	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
19-PTNLD28-TUMOR_peak_22043	chr11	128342222	128342339	+	9.89822	NA	intron (NM_001143820, intron 8 of 9)	intron (NM_001143820, intron 8 of 9)	49925	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_64935	chr22	28416148	28416314	+	9.89822	NA	intron (NM_001145418, intron 13 of 22)	intron (NM_001145418, intron 13 of 22)	-99631	NR_036169	100423034		NR_036169	miRBase:MI0014247	MIR3199-1	-	microRNA 3199-1	ncRNA
19-PTNLD28-TUMOR_peak_9428	chr1	203424174	203424324	+	9.89822	NA	Intergenic	Intergenic	-20634	NM_002725	5549	Hs.632481	NM_002725	HPRD:03556	PRELP	MST161|MSTP161|SLRR2A	proline/arginine-rich end leucine-rich repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_68233	chr3	50561023	50561223	+	9.89822	NA	Intergenic	Intergenic	-19448	NM_001291101	9254	Hs.476273	NM_006030	HPRD:06154	CACNA2D2	CACNA2D	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_93288	chr7	73819710	73819868	+	9.89822	NA	3' UTR (NM_032421, exon 16 of 16)	3' UTR (NM_032421, exon 16 of 16)	-48331	NM_005685	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_20300	chr11	79104829	79104977	+	9.89822	NA	intron (NM_001098816, intron 1 of 33)	intron (NM_001098816, intron 1 of 33)	8250	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_15404	chr10	105037319	105037511	+	9.89822	NA	exon (NM_032727, exon 1 of 3)	exon (NM_032727, exon 1 of 3)	495	NM_032727	9118	Hs.500916	NM_032727	HPRD:05628	INA	NEF5|NF-66|TXBP-1	internexin neuronal intermediate filament protein, alpha	protein-coding
19-PTNLD28-TUMOR_peak_27289	chr12	133135524	133135693	+	9.89822	NA	intron (NM_001142641, intron 5 of 16)	CpG	-22975	NR_106821	102465975		NR_106821		MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
19-PTNLD28-TUMOR_peak_24356	chr12	52766460	52766618	+	9.89792	NA	Intergenic	Intergenic	-5230	NM_002283	3891	Hs.182507	NM_002283	HPRD:04139	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
19-PTNLD28-TUMOR_peak_12881	chr10	34186333	34186562	+	9.89381	NA	Intergenic	Intergenic	-124839	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_98355	chr8	40457887	40458210	+	9.89381	NA	intron (NM_001135731, intron 4 of 5)	intron (NM_001135731, intron 4 of 5)	297295	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_68910	chr3	69261705	69261892	+	9.89381	NA	intron (NM_015123, intron 11 of 22)	intron (NM_015123, intron 11 of 22)	-90052	NM_198271	56203	Hs.350621	NM_198271	HPRD:13993	LMOD3	-	leiomodin 3 (fetal)	protein-coding
19-PTNLD28-TUMOR_peak_21713	chr11	121972489	121972649	+	9.89381	NA	intron (NR_024430, intron 3 of 3)	intron (NR_024430, intron 3 of 3)	-2017	NR_029671	406911		NR_029671	miRBase:MI0000446	MIR125B1	MIRN125B1	microRNA 125b-1	ncRNA
19-PTNLD28-TUMOR_peak_87403	chr6	41254427	41254547	+	9.89381	NA	promoter-TSS (NM_018643)	promoter-TSS (NM_018643)	-30	NM_001242589	54210	Hs.283022	NM_018643	HPRD:05472	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
19-PTNLD28-TUMOR_peak_102010	chr9	4077646	4077766	+	9.89381	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	74477	NM_152629	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_81444	chr5	106867932	106868261	+	9.89381	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	138500	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_13910	chr10	65313950	65314098	+	9.89381	NA	intron (NM_001001330, intron 1 of 7)	intron (NM_001001330, intron 1 of 7)	32901	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_2277	chr1	34873702	34873957	+	9.89381	NA	Intergenic	Intergenic	231276	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_51670	chr2	26685439	26685585	+	9.89381	NA	intron (NM_194323, intron 24 of 28)	intron (NM_194323, intron 24 of 28)	15398	NM_194322	9381	Hs.91608	NM_004802	HPRD:04727	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
19-PTNLD28-TUMOR_peak_110133	chrY	4822683	4822944	+	9.89381	NA	Intergenic	L1HS|LINE|L1	-45454	NM_032971	83259	Hs.661308	NM_032971	HPRD:11847	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_16083	chr10	125343333	125343532	+	9.89381	NA	Intergenic	Intergenic	-82439	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
19-PTNLD28-TUMOR_peak_97103	chr8	9991632	9992043	+	9.89381	NA	intron (NM_001199729, intron 2 of 6)	intron (NM_001199729, intron 2 of 6)	38775	NM_001135671	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_5144	chr1	100015866	100016204	+	9.89381	NA	Intergenic	Intergenic	-95396	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_78937	chr5	11400637	11400786	+	9.89381	NA	intron (NM_001288717, intron 5 of 20)	intron (NM_001288717, intron 5 of 20)	188318	NM_001288715	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_54182	chr2	95589058	95589215	+	9.89381	NA	intron (NR_037597, intron 5 of 9)	intron (NR_037597, intron 5 of 9)	23951	NR_037597	442028	Hs.611545	NR_037597	ENSG00000259848	LOC442028	-	uncharacterized LOC442028	ncRNA
19-PTNLD28-TUMOR_peak_96085	chr7	143798283	143798451	+	9.89381	NA	Intergenic	Intergenic	6166	NM_001004135	346525	Hs.553708	NM_001004135	HPRD:14929	OR2A12	OR2A12P|OR2A16P	olfactory receptor, family 2, subfamily A, member 12	protein-coding
19-PTNLD28-TUMOR_peak_69091	chr3	73816391	73816553	+	9.89381	NA	Intergenic	Intergenic	-142400	NM_015009	23024	Hs.743998	NM_015009	HPRD:15115	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_38976	chr16	81538791	81538920	+	9.89381	NA	intron (NM_030629, intron 1 of 20)	MLT1I|LTR|ERVL-MaLR	9901	NM_030629	80790	Hs.594095	NM_030629	HPRD:10839	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_106111	chr9	129263302	129263403	+	9.89381	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-90569	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
19-PTNLD28-TUMOR_peak_105837	chr9	123656857	123656994	+	9.89381	NA	intron (NM_001286840, intron 1 of 14)	CpG	249	NM_001286840	26147	Hs.460124	NM_015651	HPRD:17846	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
19-PTNLD28-TUMOR_peak_22978	chr12	9397600	9397774	+	9.89381	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	5088	NR_036466	100499405	Hs.182314	NR_036466	ENSG00000237248	LINC00987	-	long intergenic non-protein coding RNA 987	ncRNA
19-PTNLD28-TUMOR_peak_82991	chr5	146240158	146240321	+	9.89381	NA	intron (NM_181678, intron 2 of 10)	intron (NM_181678, intron 2 of 10)	18109	NM_001271948	5521	Hs.627618	NM_181674	HPRD:05059	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
19-PTNLD28-TUMOR_peak_18790	chr11	60266391	60266645	+	9.89381	NA	intron (NM_001164470, intron 2 of 5)	L2a|LINE|L2	6267	NM_017716	54860	Hs.272789	NM_017716	HPRD:08410	MS4A12	Ms4a10	membrane-spanning 4-domains, subfamily A, member 12	protein-coding
19-PTNLD28-TUMOR_peak_51586	chr2	25106955	25107054	+	9.89381	NA	intron (NM_004036, intron 1 of 20)	intron (NM_004036, intron 1 of 20)	35051	NM_004036	109	Hs.467898	NM_004036	HPRD:02620	ADCY3	AC3	adenylate cyclase 3	protein-coding
19-PTNLD28-TUMOR_peak_28536	chr13	77499376	77499573	+	9.89381	NA	Intergenic	Intergenic	-3111	NR_026983	690	Hs.567241	NR_026983		BTF3P11	BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B	basic transcription factor 3 pseudogene 11	pseudo
19-PTNLD28-TUMOR_peak_78129	chr4	177713985	177714110	+	9.89381	NA	promoter-TSS (NM_005429)	promoter-TSS (NM_005429)	-148	NM_005429	7424	Hs.435215	NM_005429	HPRD:03317	VEGFC	Flt4-L|LMPH1D|VRP	vascular endothelial growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_57835	chr2	202725407	202725534	+	9.89381	NA	intron (NM_001261435, intron 10 of 13)	intron (NM_001261435, intron 10 of 13)	54168	NM_001261436	65061	Hs.348711	NM_139158	HPRD:12449	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
19-PTNLD28-TUMOR_peak_15364	chr10	104405242	104405387	+	9.89293	NA	intron (NM_030912, intron 1 of 5)	UCON4|Unknown|Unknown	1062	NM_030912	81603	Hs.336810	NM_030912	HPRD:06934	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
19-PTNLD28-TUMOR_peak_17078	chr11	10331157	10331307	+	9.89267	NA	intron (NR_103765, intron 1 of 3)	intron (NR_103765, intron 1 of 3)	1372	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
19-PTNLD28-TUMOR_peak_41694	chr17	42276133	42276426	+	9.89267	NA	promoter-TSS (NM_020218)	promoter-TSS (NM_020218)	-750	NM_001098833	56970	Hs.512651	NM_020218	ENSG00000087152	ATXN7L3	-	ataxin 7-like 3	protein-coding
19-PTNLD28-TUMOR_peak_195	chr1	1978049	1978141	+	9.89267	NA	Intergenic	Intergenic	-3814	NM_002744	5590	Hs.496255	NM_002744	HPRD:01504	PRKCZ	PKC-ZETA|PKC2	protein kinase C, zeta	protein-coding
19-PTNLD28-TUMOR_peak_4422	chr1	77372443	77372661	+	9.89104	NA	intron (NM_030965, intron 2 of 4)	L2a|LINE|L2	39366	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_52251	chr2	39174874	39175050	+	9.89104	NA	intron (NM_001145451, intron 8 of 15)	intron (NM_001145451, intron 8 of 15)	12523	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	ncRNA
19-PTNLD28-TUMOR_peak_30809	chr14	65307952	65308151	+	9.89104	NA	Intergenic	Intergenic	-18185	NM_001024858	6710	Hs.417303	NM_000347	HPRD:01686	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin, beta, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_25896	chr12	104271866	104272015	+	9.89104	NA	intron (NR_027249, intron 9 of 15)	intron (NR_027249, intron 9 of 15)	-36965	NM_001031701	51559	Hs.48428	NM_016575	HPRD:18241	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_30049	chr14	43428139	43428442	+	9.89104	NA	Intergenic	L1PA2|LINE|L1	1351526	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_102107	chr9	6182744	6183195	+	9.89104	NA	Intergenic	L1PA3|LINE|L1	-32817	NM_001199641	90865	Hs.731660	NM_033439	HPRD:12275	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding
19-PTNLD28-TUMOR_peak_76881	chr4	122686230	122686412	+	9.89104	NA	promoter-TSS (NM_152399)	promoter-TSS (NM_152399)	19	NM_152399	132332	Hs.27524	NM_152399	HPRD:08089	TMEM155	-	transmembrane protein 155	protein-coding
19-PTNLD28-TUMOR_peak_95562	chr7	135314874	135314977	+	9.89104	NA	intron (NM_015135, intron 34 of 42)	intron (NM_015135, intron 34 of 42)	-32296	NM_001130929	647087	Hs.200022	NM_001130929		C7orf73	PL-5283	chromosome 7 open reading frame 73	protein-coding
19-PTNLD28-TUMOR_peak_87264	chr6	38683040	38683310	+	9.89104	NA	promoter-TSS (NM_001206927)	promoter-TSS (NM_001206927)	58	NM_001206927	1769	Hs.520106	NM_001371	HPRD:04515	DNAH8	ATPase|hdhc9	dynein, axonemal, heavy chain 8	protein-coding
19-PTNLD28-TUMOR_peak_33276	chr15	42174800	42175117	+	9.89104	NA	intron (NM_016642, intron 9 of 67)	intron (NM_016642, intron 9 of 67)	11317	NM_016642	51332	Hs.709819	NM_016642	HPRD:10438	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin, beta, non-erythrocytic 5	protein-coding
19-PTNLD28-TUMOR_peak_38003	chr16	56946158	56946375	+	9.89104	NA	intron (NM_001126107, intron 25 of 25)	intron (NM_001126107, intron 25 of 25)	8090	NR_106923	102466752		NR_106923		MIR6863	hsa-mir-6863	microRNA 6863	ncRNA
19-PTNLD28-TUMOR_peak_81304	chr5	98175593	98175721	+	9.89104	NA	Intergenic	LTR25-int|LTR|ERV1	-66869	NR_033932	503569	Hs.586188	NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9461	chr1	203605414	203605651	+	9.89104	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	9617	NM_001684	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_72076	chr3	159756852	159757061	+	9.89104	NA	intron (NR_108088, intron 3 of 9)	CpG	18520	NR_104132	730109	Hs.99333	NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
19-PTNLD28-TUMOR_peak_49213	chr19	42539025	42539175	+	9.89104	NA	intron (NM_001301030, intron 11 of 18)	L2a|LINE|L2	30857	NM_002088	2901	Hs.367799	NM_002088	HPRD:02614	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate receptor, ionotropic, kainate 5	protein-coding
19-PTNLD28-TUMOR_peak_38002	chr16	56945936	56946059	+	9.89104	NA	intron (NM_001126107, intron 25 of 25)	MIRb|SINE|MIR	7821	NR_106923	102466752		NR_106923		MIR6863	hsa-mir-6863	microRNA 6863	ncRNA
19-PTNLD28-TUMOR_peak_91172	chr7	6486709	6486942	+	9.88942	NA	intron (NM_001142936, intron 1 of 12)	intron (NM_001142936, intron 1 of 12)	818	NM_001142936	221955	Hs.487498	NM_139179	HPRD:17324	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase, beta	protein-coding
19-PTNLD28-TUMOR_peak_95240	chr7	129614128	129614409	+	9.88696	NA	Intergenic	L2b|LINE|L2	-21468	NM_003344	7328	Hs.643548	NM_003344	HPRD:03052	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
19-PTNLD28-TUMOR_peak_82017	chr5	128797262	128797410	+	9.88677	NA	promoter-TSS (NR_125748)	promoter-TSS (NR_125748)	-954	NR_125748	103689846	Hs.628635	NR_125748		ADAMTS19-AS1	-	ADAMTS19 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_106898	chr9	141044508	141044839	+	9.88677	NA	non-coding (NR_027156, exon 1 of 5)	non-coding (NR_027156, exon 1 of 5)	108	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	tubulin, beta pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_46522	chr19	893439	893572	+	9.88677	NA	promoter-TSS (NM_005481)	promoter-TSS (NM_005481)	21	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_74836	chr4	26022613	26022852	+	9.88677	NA	Intergenic	Intergenic	106918	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_94042	chr7	95319752	95320057	+	9.88677	NA	Intergenic	Intergenic	-81914	NM_001278421	1780	Hs.440364	NM_004411	HPRD:04798	DYNC1I1	DNCI1|DNCIC1	dynein, cytoplasmic 1, intermediate chain 1	protein-coding
19-PTNLD28-TUMOR_peak_102381	chr9	19441910	19442029	+	9.88677	NA	intron (NM_001010887, intron 4 of 5)	intron (NM_001010887, intron 4 of 5)	33044	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_44920	chr18	21269338	21269958	+	9.88677	NA	promoter-TSS (NM_001127717)	promoter-TSS (NM_001127717)	86	NM_001127717	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_46850	chr19	5536496	5536765	+	9.88677	NA	Intergenic	CpG	31375	NR_027064	257000	Hs.515575	NM_153375	HPRD:17859	TINCR	LINC00036|NCRNA00036|PLAC2	tissue differentiation-inducing non-protein coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_97186	chr8	11793698	11793851	+	9.88677	NA	Intergenic	Intergenic	38334	NM_001033018	613210	Hs.558285	NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin, beta 136	protein-coding
19-PTNLD28-TUMOR_peak_100442	chr8	122681574	122682206	+	9.88677	NA	Intergenic	Intergenic	-28260	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_78962	chr5	13107742	13108008	+	9.88677	NA	Intergenic	Intergenic	532906	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_97299	chr8	16613341	16613518	+	9.88677	NA	Intergenic	Intergenic	246245	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_73144	chr3	189626531	189626718	+	9.88677	NA	Intergenic	Intergenic	78913	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
19-PTNLD28-TUMOR_peak_6674	chr1	150253782	150253940	+	9.88594	NA	TTS (NM_024579)	TTS (NM_024579)	-1082	NM_144697	148523	Hs.54680	NM_144697	HPRD:14081	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
19-PTNLD28-TUMOR_peak_19290	chr11	65325681	65325905	+	9.88594	NA	promoter-TSS (NM_001164266)	promoter-TSS (NM_001164266)	-94	NM_021070	4054	Hs.289019	NM_021070	HPRD:03649	LTBP3	LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_8038	chr1	168198369	168198512	+	9.88060	NA	intron (NM_199344, intron 1 of 7)	intron (NM_199344, intron 1 of 7)	3185	NM_199344	375035	Hs.645435	NM_199344		SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_38085	chr16	57861084	57861268	+	9.87959	NA	Intergenic	Intergenic	16627	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_16445	chr11	189841	190166	+	9.87959	NA	Intergenic	TAR1|Satellite|telo	-3077	NM_001097610	653486	Hs.127059	NM_001097610		LOC653486	-	secretoglobin, family 1C, member 1-like	protein-coding
19-PTNLD28-TUMOR_peak_75896	chr4	79697024	79697576	+	9.87959	NA	promoter-TSS (NM_198892)	promoter-TSS (NM_198892)	-232	NM_017593	55589	Hs.146551	NM_017593	HPRD:09828	BMP2K	BIKE	BMP2 inducible kinase	protein-coding
19-PTNLD28-TUMOR_peak_3276	chr1	47489215	47489621	+	9.87766	NA	5' UTR (NM_178033, exon 1 of 12)	5' UTR (NM_178033, exon 1 of 12)	178	NM_178033	260293	Hs.439760	NM_178033	HPRD:13110	CYP4X1	CYPIVX1	cytochrome P450, family 4, subfamily X, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_7383	chr1	156995013	156995531	+	9.87766	NA	intron (NM_198236, intron 1 of 40)	intron (NM_198236, intron 1 of 40)	19890	NM_198236	9826	Hs.516954	NM_014784	HPRD:09302	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding
19-PTNLD28-TUMOR_peak_55557	chr2	128181185	128181359	+	9.87766	NA	promoter-TSS (NR_039944)	promoter-TSS (NR_039944)	-78	NR_039944	100616187		NR_039944	miRBase:MI0017428	MIR4783	-	microRNA 4783	ncRNA
19-PTNLD28-TUMOR_peak_8257	chr1	173238959	173239131	+	9.87766	NA	intron (NR_037845, intron 2 of 2)	L2|LINE|L2	-62593	NM_003326	7292	Hs.181097	NM_003326	HPRD:04668	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TXGP1	tumor necrosis factor (ligand) superfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_69825	chr3	112491303	112491432	+	9.87766	NA	Intergenic	Intergenic	-23201	NR_110017	101929694	Hs.385630	NR_110017	ENSG00000240893	LOC101929694	-	uncharacterized LOC101929694	ncRNA
19-PTNLD28-TUMOR_peak_43894	chr17	78456720	78457102	+	9.87766	NA	Intergenic	L2c|LINE|L2	-6507	NM_002522	4884	Hs.514556	NM_002522	HPRD:03843	NPTX1	NP1	neuronal pentraxin I	protein-coding
19-PTNLD28-TUMOR_peak_59516	chr20	2645544	2645690	+	9.87766	NA	promoter-TSS (NM_001258384)	promoter-TSS (NM_001258384)	-752	NM_006899	3420	Hs.436405	NM_006899	HPRD:05163	IDH3B	H-IDHB|RP46	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding
19-PTNLD28-TUMOR_peak_22776	chr12	6649114	6649281	+	9.87766	NA	non-coding (NR_036467, exon 10 of 10)	non-coding (NR_036467, exon 10 of 10)	4812	NM_001256799	2597	Hs.544577	NM_002046	HPRD:00713	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_38286	chr16	67062843	67062967	+	9.87766	NA	promoter-TSS (NM_001755)	promoter-TSS (NM_001755)	-145	NM_001755	865	Hs.460988	NM_001755	HPRD:00418	CBFB	PEBP2B	core-binding factor, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_43929	chr17	79001739	79001844	+	9.87766	NA	Intergenic	Intergenic	6728	NR_026857	440465	Hs.448889	NM_001004336	HPRD:13544	BAIAP2-AS1	-	BAIAP2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_47897	chr19	17457114	17457213	+	9.87766	NA	Intergenic	Intergenic	8837	NM_133644	84705	Hs.334885	NM_032620	HPRD:12255	GTPBP3	GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_98185	chr8	37451851	37451971	+	9.87522	NA	Intergenic	Intergenic	-73007	NR_121621	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_103303	chr9	45003965	45004157	+	9.87522	NA	intron (NR_121606, intron 2 of 2)	intron (NR_121606, intron 2 of 2)	1229	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_79599	chr5	39073518	39073659	+	9.87522	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	922	NM_001285440	253260	Hs.407926	NM_152756	HPRD:10682	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR, complex 2	protein-coding
19-PTNLD28-TUMOR_peak_51975	chr2	31019718	31019863	+	9.87195	NA	intron (NM_144575, intron 1 of 22)	intron (NM_144575, intron 1 of 22)	10521	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_84149	chr5	174177798	174177957	+	9.87195	NA	promoter-TSS (NR_039777)	promoter-TSS (NR_039777)	-860	NR_039777	100616202		NR_039777	miRBase:MI0017261	MIR4634	-	microRNA 4634	ncRNA
19-PTNLD28-TUMOR_peak_65573	chr22	39712488	39712747	+	9.87195	NA	TTS (NR_000026)	TTS (NR_000026)	284	NR_000026	116936		NR_000026		RNU86	U82|U86	RNA, U86 small nucleolar	snoRNA
19-PTNLD28-TUMOR_peak_54686	chr2	106382383	106382552	+	9.87195	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	20947	NM_001004722	8440	Hs.529244	NM_003581	HPRD:05378	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_61273	chr20	43490085	43490226	+	9.87195	NA	Intergenic	MIRb|SINE|MIR	-24085	NM_139323	7529	Hs.643544	NM_003404	HPRD:03184	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta	protein-coding
19-PTNLD28-TUMOR_peak_98641	chr8	48651472	48651628	+	9.86919	NA	promoter-TSS (NM_005195)	promoter-TSS (NM_005195)	-824	NM_005195	1052	Hs.440829	NM_005195		CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
19-PTNLD28-TUMOR_peak_33405	chr15	45111931	45112069	+	9.86816	NA	Intergenic	Intergenic	83440	NM_001301145	140691	Hs.745248	NM_080745	HPRD:11518	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
19-PTNLD28-TUMOR_peak_15919	chr10	120784899	120785125	+	9.86816	NA	Intergenic	Intergenic	-4216	NM_199461	340719	Hs.591918	NM_199461	HPRD:16302	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_73011	chr3	187285552	187285724	+	9.86816	NA	Intergenic	MIRc|SINE|MIR	102563	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_90604	chr6	168962308	168962407	+	9.86319	NA	intron (NM_022138, intron 7 of 12)	intron (NM_022138, intron 7 of 12)	120526	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_18489	chr11	47788221	47788344	+	9.86319	NA	intron (NM_015308, intron 1 of 16)	CpG	711	NM_015308	23360	Hs.6834	NM_015308	HPRD:10996	FNBP4	FBP30	formin binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_86533	chr6	30851013	30851183	+	9.86316	NA	promoter-TSS (NM_001954)	promoter-TSS (NM_001954)	708	NM_001297652	780	Hs.631988	NM_001954	HPRD:02678	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_1052	chr1	16449395	16449739	+	9.86203	NA	Intergenic	L2c|LINE|L2	33015	NM_004431	1969	Hs.171596	NM_004431	HPRD:01494	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
19-PTNLD28-TUMOR_peak_72957	chr3	186533968	186534286	+	9.86203	NA	intron (NR_125409, intron 3 of 3)	MSTB|LTR|ERVL-MaLR	9183	NR_125409	102724699	Hs.518476	NR_125409		LOC102724699	-	uncharacterized LOC102724699	ncRNA
19-PTNLD28-TUMOR_peak_74373	chr4	8689963	8690198	+	9.86203	NA	Intergenic	CpG	95693	NM_001014448	8532	Hs.61995	NM_003652	HPRD:04376	CPZ	-	carboxypeptidase Z	protein-coding
19-PTNLD28-TUMOR_peak_21883	chr11	125073728	125073873	+	9.86203	NA	intron (NM_022062, intron 1 of 12)	intron (NM_022062, intron 1 of 12)	39241	NM_022062	63876	Hs.278564	NM_022062	HPRD:17857	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_34659	chr15	77923393	77923557	+	9.86203	NA	intron (NM_001301195, intron 3 of 3)	intron (NM_001301195, intron 3 of 3)	1394	NM_032808	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71159	chr3	138080477	138080687	+	9.86203	NA	intron (NM_001252090, intron 1 of 5)	intron (NM_001252090, intron 1 of 5)	12612	NM_001252090	22808	Hs.527021	NM_012219	HPRD:06662	MRAS	M-RAs|R-RAS3|RRAS3	muscle RAS oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_30929	chr14	68711456	68711565	+	9.86203	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	425014	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_92342	chr7	45128568	45129379	+	9.86203	NA	promoter-TSS (NM_001146334)	promoter-TSS (NM_001146334)	-480	NM_001146334	23148	Hs.96633	NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
19-PTNLD28-TUMOR_peak_40897	chr17	28671946	28672208	+	9.86203	NA	Intergenic	Intergenic	-11012	NM_206832	388364	Hs.371005	NM_206832	HPRD:18274	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72429	chr3	174250709	174250860	+	9.86203	NA	Intergenic	LTR10D|LTR|ERV1	-326327	NM_207015	254827	Hs.565848	NM_207015	HPRD:16388	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_18610	chr11	56918238	56918424	+	9.86203	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-30890	NM_001005210	219527	Hs.199853	NM_001005210	HPRD:16990	LRRC55	-	leucine rich repeat containing 55	protein-coding
19-PTNLD28-TUMOR_peak_26421	chr12	113680018	113680240	+	9.85813	NA	intron (NM_017901, intron 2 of 27)	intron (NM_017901, intron 2 of 27)	-1937	NM_001301214	53373	Hs.524763	NM_017901	HPRD:18217	TPCN1	TPC1	two pore segment channel 1	protein-coding
19-PTNLD28-TUMOR_peak_49989	chr19	51224947	51225058	+	9.85679	NA	Intergenic	Intergenic	-1603	NM_002975	6320	Hs.512680	NM_002975	HPRD:05277	CLEC11A	CLECSF3|LSLCL|P47|SCGF	C-type lectin domain family 11, member A	protein-coding
19-PTNLD28-TUMOR_peak_50407	chr19	56097287	56097431	+	9.85679	NA	Intergenic	Intergenic	-5148	NM_152600	163033	Hs.112529	NM_152600	HPRD:11730	ZNF579	-	zinc finger protein 579	protein-coding
19-PTNLD28-TUMOR_peak_84571	chr5	180257918	180258052	+	9.85629	NA	promoter-TSS (NR_027183)	promoter-TSS (NR_027183)	28	NR_045679	729678	Hs.348292	NR_027183	ENSG00000245060	LINC00847	-	long intergenic non-protein coding RNA 847	ncRNA
19-PTNLD28-TUMOR_peak_40514	chr17	19013553	19013742	+	9.85443	NA	Intergenic	Intergenic	17121	NM_001291904	79999	Hs.677375	NM_024934		LOC79999	-	uncharacterized LOC79999	protein-coding
19-PTNLD28-TUMOR_peak_57155	chr2	177661546	177661772	+	9.85138	NA	Intergenic	L1PA3|LINE|L1	159177	NR_110599	102724224	Hs.663125	NR_110599		LOC102724224	-	uncharacterized LOC102724224	ncRNA
19-PTNLD28-TUMOR_peak_107300	chrUn_gl000234	13787	14216	+	9.85138	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_56406	chr2	154727807	154727941	+	9.85138	NA	promoter-TSS (NM_052917)	promoter-TSS (NM_052917)	-552	NM_052917	114805	Hs.470277	NM_052917	HPRD:16325	GALNT13	GalNAc-T13	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
19-PTNLD28-TUMOR_peak_7357	chr1	156696494	156696660	+	9.85083	NA	intron (NM_030980, intron 1 of 2)	intron (NM_030980, intron 1 of 2)	1128	NM_030980	81875	Hs.301904	NM_030980	HPRD:07788	ISG20L2	-	interferon stimulated exonuclease gene 20kDa-like 2	protein-coding
19-PTNLD28-TUMOR_peak_3325	chr1	48017666	48017824	+	9.85083	NA	Intergenic	Intergenic	116056	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_1872	chr1	28880212	28880464	+	9.84901	NA	intron (NR_003109, intron 2 of 9)	intron (NR_003109, intron 2 of 9)	809	NM_017846	54952	Hs.533626	NM_017846	HPRD:18035	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45715	chr18	47688344	47688496	+	9.84628	NA	intron (NM_001080467, intron 1 of 39)	intron (NM_001080467, intron 1 of 39)	33031	NM_001080467	4645	Hs.720076	NM_001080467	ENSG00000167306	MYO5B	-	myosin VB	protein-coding
19-PTNLD28-TUMOR_peak_68148	chr3	49712117	49712232	+	9.84443	NA	intron (NM_001640, intron 2 of 21)	CpG-18517	739	NM_001640	327	Hs.517969	NM_001640	HPRD:00034	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_101904	chr9	613779	614072	+	9.84105	NA	intron (NM_001256877, intron 2 of 12)	intron (NM_001256877, intron 2 of 12)	-92881	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_75561	chr4	68017210	68017653	+	9.84105	NA	Intergenic	LTR12C|LTR|ERV1	270287	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_55584	chr2	128663807	128664175	+	9.84105	NA	Intergenic	MER21C|LTR|ERVL	-20477	NM_001199140	83607	Hs.546449	NM_031445	HPRD:14625	AMMECR1L	-	AMMECR1-like	protein-coding
19-PTNLD28-TUMOR_peak_85519	chr6	13766542	13766695	+	9.84105	NA	Intergenic	Intergenic	48174	NM_001031713	63933	Hs.214043	NM_022102	HPRD:12833	MCUR1	C6orf79|CCDC90A	mitochondrial calcium uniporter regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_105958	chr9	125226167	125226428	+	9.84105	NA	Intergenic	L1PB1|LINE|L1	13908	NM_001004451	347168	Hs.632692	NM_001004451	HPRD:14916	OR1J1	OR9-18|hg32	olfactory receptor, family 1, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_48131	chr19	19205976	19206171	+	9.84105	NA	intron (NM_178526, intron 1 of 7)	AluJb|SINE|Alu	31270	NM_178526	284439	Hs.303669	NM_178526	HPRD:17523	SLC25A42	-	solute carrier family 25, member 42	protein-coding
19-PTNLD28-TUMOR_peak_86233	chr6	27486246	27486379	+	9.84105	NA	Intergenic	Intergenic	-45415	NM_007149	7738	Hs.158174	NM_007149	HPRD:03785	ZNF184	-	zinc finger protein 184	protein-coding
19-PTNLD28-TUMOR_peak_2231	chr1	33833484	33833610	+	9.84105	NA	intron (NM_198040, intron 5 of 13)	intron (NM_198040, intron 5 of 13)	7647	NM_198040	1912	Hs.524271	NM_004427	HPRD:10340	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_99829	chr8	102903745	102903873	+	9.84105	NA	intron (NM_001040624, intron 4 of 7)	L1PA2|LINE|L1	-100370	NM_032041	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_89071	chr6	110360754	110360923	+	9.84105	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	61379	NM_001286099	2830	Hs.46332	NM_005284	HPRD:02775	GPR6	-	G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_60563	chr20	31936300	31936518	+	9.84105	NA	Intergenic	Intergenic	52966	NM_016082	51654	Hs.435952	NM_016082	HPRD:12189	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54032	chr2	89348025	89348178	+	9.84105	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	236217	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_24523	chr12	54411479	54412198	+	9.84105	NA	intron (NM_014620, intron 1 of 3)	CpG	1202	NR_003084	3222	Hs.549040	NM_018953	HPRD:00859	HOXC5	CP11|HOX3|HOX3D	homeobox C5	protein-coding
19-PTNLD28-TUMOR_peak_52671	chr2	47748336	47748783	+	9.84105	NA	exon (NM_022055, exon 2 of 2)	exon (NM_022055, exon 2 of 2)	-6117	NR_120602	644093	Hs.734158	NR_120602		HCG2040054	-	uncharacterized LOC644093	ncRNA
19-PTNLD28-TUMOR_peak_7229	chr1	155804144	155804311	+	9.84105	NA	intron (NM_001282858, intron 2 of 31)	intron (NM_001282858, intron 2 of 31)	22859	NM_001282860	54856	Hs.656361	NM_032292	HPRD:13370	GON4L	GON-4|GON4|YARP	gon-4-like (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_95766	chr7	139286999	139287271	+	9.84105	NA	intron (NM_022740, intron 10 of 14)	MamRep1161|DNA|TcMar	78461	NM_001080511	154790	Hs.57806	NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2, member L	protein-coding
19-PTNLD28-TUMOR_peak_40911	chr17	29046378	29046563	+	9.83933	NA	intron (NR_024187, intron 1 of 7)	L2a|LINE|L2	9844	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_53694	chr2	82250124	82250315	+	9.83933	NA	Intergenic	LTR14C|LTR|ERVK	-556149	NR_110161	100507201	Hs.98589	NR_110161		LOC100507201	-	uncharacterized LOC100507201	ncRNA
19-PTNLD28-TUMOR_peak_40780	chr17	26852256	26852396	+	9.83933	NA	intron (NM_003593, intron 2 of 7)	intron (NM_003593, intron 2 of 7)	1367	NM_003593	8456	Hs.663679	NM_003593	HPRD:02907	FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding
19-PTNLD28-TUMOR_peak_15448	chr10	105604087	105604250	+	9.83933	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	10996	NM_014631	9644	Hs.678727	NM_014631	HPRD:10228	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
19-PTNLD28-TUMOR_peak_31866	chr14	95701027	95701171	+	9.83933	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	-76752	NM_030621	23405	Hs.87889	NM_030621	HPRD:05875	DICER1	DCR1|Dicer|HERNA|MNG1|RMSE2	dicer 1, ribonuclease type III	protein-coding
19-PTNLD28-TUMOR_peak_15383	chr10	104542825	104543004	+	9.83933	NA	intron (NM_017787, intron 1 of 3)	intron (NM_017787, intron 1 of 3)	7026	NM_017787	54838	Hs.500897	NM_017787	HPRD:12567	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_97608	chr8	22508776	22508918	+	9.83933	NA	intron (NM_018688, intron 1 of 8)	HAL1|LINE|L1	-9125	NR_027715	80094	Hs.675917	NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_25953	chr12	105184441	105184545	+	9.83933	NA	Intergenic	Intergenic	137979	NM_032148	84102	Hs.577463	NM_032148	HPRD:15389	SLC41A2	SLC41A1-L1	solute carrier family 41 (magnesium transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_82466	chr5	137971029	137971228	+	9.83933	NA	Intergenic	Intergenic	-59810	NM_004134	3313	Hs.184233	NM_004134	HPRD:02770	HSPA9	CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74	heat shock 70kDa protein 9 (mortalin)	protein-coding
19-PTNLD28-TUMOR_peak_21026	chr11	108422591	108422708	+	9.83933	NA	intron (NM_015065, intron 1 of 5)	intron (NM_015065, intron 1 of 5)	41725	NM_015065	23086	Hs.28540	NM_015065	HPRD:08341	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
19-PTNLD28-TUMOR_peak_50790	chr2	1576427	1576593	+	9.83933	NA	Intergenic	Intergenic	158330	NM_175721	7173	Hs.467554	NM_000547	HPRD:06000	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_66293	chr3	5181376	5181512	+	9.83933	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	17514	NM_018184	55207	Hs.250009	NM_018184	HPRD:12483	ARL8B	ARL10C|Gie1	ADP-ribosylation factor-like 8B	protein-coding
19-PTNLD28-TUMOR_peak_43289	chr17	72172800	72173083	+	9.83933	NA	Intergenic	Intergenic	-26854	NM_000999	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_20335	chr11	80230649	80230927	+	9.83933	NA	Intergenic	Intergenic	243058	NR_120570	101928944	Hs.547927	NR_120570	ENSG00000255178	LOC101928944	-	uncharacterized LOC101928944	ncRNA
19-PTNLD28-TUMOR_peak_40827	chr17	27367300	27367591	+	9.83933	NA	Intergenic	Intergenic	-2473	NM_016518	51268	Hs.462585	NM_016518	HPRD:17853	PIPOX	LPIPOX	pipecolic acid oxidase	protein-coding
19-PTNLD28-TUMOR_peak_4813	chr1	90667205	90667356	+	9.83933	NA	Intergenic	Intergenic	206602	NM_182976	284695	Hs.306221	NM_181781	HPRD:15774	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
19-PTNLD28-TUMOR_peak_83993	chr5	172175606	172175748	+	9.83933	NA	Intergenic	CpG	-6829	NM_001287812	101928093	Hs.646902	NM_001287812		LOC101928093	-	uncharacterized LOC101928093	protein-coding
19-PTNLD28-TUMOR_peak_86833	chr6	33352453	33352585	+	9.83933	NA	Intergenic	Intergenic	-6794	NM_002263	3833	Hs.436912	NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
19-PTNLD28-TUMOR_peak_100048	chr8	108235433	108235694	+	9.83933	NA	Intergenic	Intergenic	274691	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_34172	chr15	68599026	68599209	+	9.83933	NA	intron (NM_001004439, intron 28 of 29)	intron (NM_001004439, intron 28 of 29)	28976	NM_015322	10116	Hs.362733	NM_015322		FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog b (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_13863	chr10	64134917	64135059	+	9.83933	NA	promoter-TSS (NR_104162)	promoter-TSS (NR_104162)	-102	NR_104162	283045		NR_104162		LOC283045	-	uncharacterized LOC283045	ncRNA
19-PTNLD28-TUMOR_peak_9856	chr1	208417605	208417804	+	9.83933	NA	promoter-TSS (NM_025179)	promoter-TSS (NM_025179)	-39	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_84003	chr5	172211169	172211447	+	9.83933	NA	Intergenic	Intergenic	-13105	NM_004417	1843	Hs.171695	NM_004417	HPRD:02835	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_105623	chr9	117618576	117618781	+	9.83933	NA	Intergenic	Intergenic	-50270	NM_005118	9966	Hs.23349	NM_005118	HPRD:04956	TNFSF15	TL1|TL1A|VEGI|VEGI192A	tumor necrosis factor (ligand) superfamily, member 15	protein-coding
19-PTNLD28-TUMOR_peak_72674	chr3	182833963	182834275	+	9.83933	NA	Intergenic	Intergenic	-16744	NM_001293273	56922	Hs.47649	NM_020166	HPRD:01951	MCCC1	MCC-B|MCCA	methylcrotonoyl-CoA carboxylase 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_73346	chr3	193924209	193924444	+	9.83933	NA	promoter-TSS (NR_125404)	promoter-TSS (NR_125404)	-230	NR_125404	100505920	Hs.436654	NR_125403		LOC100505920	-	uncharacterized LOC100505920	ncRNA
19-PTNLD28-TUMOR_peak_52035	chr2	32852553	32852760	+	9.83886	NA	promoter-TSS (NM_001193509)	promoter-TSS (NM_001193509)	-431	NM_001193509	55622	Hs.468125	NM_017735	HPRD:08618	TTC27	-	tetratricopeptide repeat domain 27	protein-coding
19-PTNLD28-TUMOR_peak_84224	chr5	175665973	175666245	+	9.83886	NA	intron (NM_198567, intron 1 of 8)	intron (NM_198567, intron 1 of 8)	739	NM_198567	375484	Hs.719847	NM_198567	HPRD:13486	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO-interacting motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4621	chr1	85930409	85930887	+	9.83886	NA	exon (NM_012137, exon 1 of 6)	exon (NM_012137, exon 1 of 6)	241	NM_012137	23576	Hs.713411	NM_012137	HPRD:09203	DDAH1	DDAH|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_8016	chr1	167904799	167904948	+	9.83874	NA	promoter-TSS (NM_018442)	promoter-TSS (NM_018442)	566	NR_026550	25874	Hs.517768	NM_015415	HPRD:08525	MPC2	BRP44	mitochondrial pyruvate carrier 2	protein-coding
19-PTNLD28-TUMOR_peak_66619	chr3	11623777	11624003	+	9.83789	NA	promoter-TSS (NM_001128220)	promoter-TSS (NM_001128220)	-25	NM_001128220	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_96962	chr8	7251987	7252096	+	9.83789	NA	Intergenic	Intergenic	22313	NM_001205266	100289462	Hs.740237	NM_001205266	ENSG00000177257	DEFB4B	DEFB4P	defensin, beta 4B	protein-coding
19-PTNLD28-TUMOR_peak_92170	chr7	42534790	42535217	+	9.83789	NA	Intergenic	Intergenic	211043	NR_110833	101928795	Hs.566753	NR_110833	ENSG00000238284	LINC01448	-	long intergenic non-protein coding RNA 1448	ncRNA
19-PTNLD28-TUMOR_peak_30195	chr14	50474330	50474510	+	9.83789	NA	promoter-TSS (NM_001012706)	promoter-TSS (NM_001012706)	-182	NM_001012706	283551	Hs.660867	NM_001012706	HPRD:13397	C14orf182	-	chromosome 14 open reading frame 182	protein-coding
19-PTNLD28-TUMOR_peak_43611	chr17	74966072	74966210	+	9.83789	NA	Intergenic	Intergenic	97412	NM_198955	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_75768	chr4	77491626	77491800	+	9.83741	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	-3008	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_39092	chr16	84551971	84552126	+	9.83741	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-13760	NM_020947	57707	Hs.288274	NM_020947		TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63189	chr21	33828859	33828974	+	9.83741	NA	intron (NM_001286556, intron 2 of 7)	intron (NM_001286556, intron 2 of 7)	44171	NR_104472	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_98987	chr8	63951940	63952114	+	9.83741	NA	promoter-TSS (NM_003878)	promoter-TSS (NM_003878)	-417	NM_003878	8836	Hs.78619	NM_003878	HPRD:03299	GGH	GH	gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)	protein-coding
19-PTNLD28-TUMOR_peak_71325	chr3	140962123	140962352	+	9.83741	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	11570	NM_001037172	92370	Hs.657887	NM_152282	HPRD:08675	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_39093	chr16	84554856	84555027	+	9.83741	NA	Intergenic	Intergenic	-16653	NM_020947	57707	Hs.288274	NM_020947		TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_109338	chrX	119694615	119694940	+	9.83741	NA	promoter-TSS (NM_001079872)	promoter-TSS (NM_001079872)	40	NM_001079872	8450	Hs.102914	NM_003588	HPRD:02251	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
19-PTNLD28-TUMOR_peak_54406	chr2	99072253	99072362	+	9.83741	NA	intron (NM_001134225, intron 1 of 24)	intron (NM_001134225, intron 1 of 24)	10986	NM_001134224	3631	Hs.469386	NM_001566	HPRD:02949	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase, type I, 107kDa	protein-coding
19-PTNLD28-TUMOR_peak_81025	chr5	83678179	83678365	+	9.83741	NA	intron (NM_001278642, intron 1 of 9)	CpG	2413	NM_005711	10085	Hs.482730	NM_005711	HPRD:09350	EDIL3	DEL1	EGF-like repeats and discoidin I-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_44381	chr18	5890630	5890944	+	9.83741	NA	exon (NM_001080209, exon 1 of 1)	exon (NM_001080209, exon 1 of 1)	1316	NM_001080209	645369	Hs.346566	NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
19-PTNLD28-TUMOR_peak_12605	chr10	28615493	28615732	+	9.83461	NA	Intergenic	Intergenic	-37333	NR_107053	102465880		NR_107053		MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
19-PTNLD28-TUMOR_peak_56443	chr2	157236724	157236847	+	9.83461	NA	Intergenic	HAL1|LINE|L1	-47498	NM_006186	4929	Hs.563344	NM_006186	HPRD:03493	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_48602	chr19	34836920	34837020	+	9.83461	NA	intron (NM_014686, intron 10 of 13)	intron (NM_014686, intron 10 of 13)	-18675	NM_001184722	2821	Hs.466471	NM_000175	HPRD:01394	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
19-PTNLD28-TUMOR_peak_33082	chr15	37697474	37697607	+	9.83461	NA	Intergenic	L1PA2|LINE|L1	-304040	NM_002399	4212	Hs.510989	NM_002399	HPRD:03443	MEIS2	HsT18361|MRG1	Meis homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_18717	chr11	58538363	58538525	+	9.83461	NA	Intergenic	HERV1_I-int|LTR|ERV1	-38997	NM_201648	10249	Hs.145384	NM_005838	HPRD:07603	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_52446	chr2	43839737	43839919	+	9.83461	NA	Intergenic	MER20|DNA|hAT-Charlie	-16643	NR_073394	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_22090	chr11	129185780	129186204	+	9.83461	NA	Intergenic	Intergenic	-59889	NM_003658	8538	Hs.591944	NM_003658	HPRD:16074	BARX2	-	BARX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_27888	chr13	39948930	39949333	+	9.83461	NA	intron (NM_005780, intron 3 of 3)	intron (NM_005780, intron 3 of 3)	228225	NM_005780	10186	Hs.507798	NM_005780	HPRD:09464	LHFP	-	lipoma HMGIC fusion partner	protein-coding
19-PTNLD28-TUMOR_peak_34740	chr15	79450101	79450339	+	9.83461	NA	Intergenic	Intergenic	-51910	NR_029705	406960		NR_029705	miRBase:MI0000481	MIR184	EDICT|MIRN184|miR-184	microRNA 184	ncRNA
19-PTNLD28-TUMOR_peak_71860	chr3	155422619	155422902	+	9.83461	NA	promoter-TSS (NM_014996)	promoter-TSS (NM_014996)	-763	NM_014996	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_54490	chr2	101041696	101041861	+	9.83461	NA	Intergenic	Intergenic	-7648	NM_004854	9486	Hs.516370	NM_004854	HPRD:07332	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_973	chr1	15426962	15427093	+	9.83461	NA	intron (NM_201628, intron 10 of 14)	intron (NM_201628, intron 10 of 14)	51933	NR_027136	200197	Hs.531424	NM_182534		TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33274	chr15	42130693	42130981	+	9.83461	NA	promoter-TSS (NM_001114633)	promoter-TSS (NM_001114633)	-174	NM_001114633	100137049	Hs.198161	NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding
19-PTNLD28-TUMOR_peak_76111	chr4	86419590	86419836	+	9.83461	NA	intron (NM_001025616, intron 1 of 9)	intron (NM_001025616, intron 1 of 9)	23429	NM_001025616	83478	Hs.444229	NM_031305	HPRD:09804	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
19-PTNLD28-TUMOR_peak_102354	chr9	18705970	18706203	+	9.83461	NA	intron (NM_001040272, intron 13 of 28)	MER41B|LTR|ERV1	132782	NR_036107	100422869		NR_036107		MIR3152	-	microRNA 3152	ncRNA
19-PTNLD28-TUMOR_peak_16653	chr11	2381504	2381755	+	9.83461	NA	intron (NR_108080, intron 1 of 2)	ERVL-B4-int|LTR|ERVL	-15778	NM_001297649	975	Hs.54457	NM_004356	HPRD:08924	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
19-PTNLD28-TUMOR_peak_90611	chr6	169077431	169077600	+	9.83461	NA	Intergenic	Intergenic	235684	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_34061	chr15	66446548	66446696	+	9.83461	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	99453	NM_032445	84465	Hs.712886	NM_032445	HPRD:14385	MEGF11	-	multiple EGF-like-domains 11	protein-coding
19-PTNLD28-TUMOR_peak_106347	chr9	132052983	132053254	+	9.83461	NA	Intergenic	Intergenic	8423	NR_121587	101929331	Hs.522428	NR_121587	ENSG00000224307	LOC101929331	-	uncharacterized LOC101929331	ncRNA
19-PTNLD28-TUMOR_peak_16331	chr10	134242930	134243233	+	9.83461	NA	Intergenic	Intergenic	-15633	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_26086	chr12	107790896	107791030	+	9.83461	NA	intron (NM_001018072, intron 1 of 16)	L1M5|LINE|L1	78766	NM_001018072	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_18718	chr11	58539067	58539201	+	9.83461	NA	Intergenic	HERV1_I-int|LTR|ERV1	-39687	NM_201648	10249	Hs.145384	NM_005838	HPRD:07603	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_21334	chr11	115359815	115359943	+	9.83461	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	15362	NM_014333	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_15751	chr10	115925947	115926059	+	9.83461	NA	intron (NM_018017, intron 1 of 15)	intron (NM_018017, intron 1 of 15)	7935	NR_031747	100302224		NR_031747	miRBase:MI0010629	MIR2110	hsa-mir-2110	microRNA 2110	ncRNA
19-PTNLD28-TUMOR_peak_11674	chr10	3034783	3034883	+	9.83461	NA	Intergenic	PABL_A|LTR|ERV1	-74879	NM_002627	5214	Hs.26010	NM_002627	HPRD:01384	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
19-PTNLD28-TUMOR_peak_7736	chr1	161973851	161973980	+	9.83461	NA	intron (NM_001297713, intron 4 of 7)	intron (NM_001297713, intron 4 of 7)	20340	NM_001297713	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_35633	chr16	677571	677819	+	9.83250	NA	3' UTR (NM_021168, exon 6 of 6)	3' UTR (NM_021168, exon 6 of 6)	-3317	NM_053284	117166	Hs.345818	NM_053284	HPRD:12153	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70464	chr3	125898753	125898878	+	9.83250	NA	promoter-TSS (NR_046383)	promoter-TSS (NR_046383)	-93	NR_046383	100862662	Hs.633362	NR_046383	ENSG00000246022	ALDH1L1-AS2	-	ALDH1L1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_53481	chr2	73338746	73338870	+	9.83250	NA	intron (NM_015470, intron 1 of 4)	intron (NM_015470, intron 1 of 4)	1338	NM_015470	26056	Hs.24557	NM_015470	HPRD:16117	RAB11FIP5	GAF1|RIP11|pp75	RAB11 family interacting protein 5 (class I)	protein-coding
19-PTNLD28-TUMOR_peak_36733	chr16	21512459	21512677	+	9.82656	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	1034	NR_027155	100271836	Hs.552700	NR_027155	ENSG00000180747	SMG1P3	-	SMG1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_9787	chr1	207038407	207038609	+	9.82649	NA	promoter-TSS (NM_018724)	promoter-TSS (NM_018724)	-646	NM_018724	50604	Hs.272373	NM_018724		IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
19-PTNLD28-TUMOR_peak_46540	chr19	1042324	1042479	+	9.82649	NA	intron (NM_019112, intron 6 of 46)	intron (NM_019112, intron 6 of 46)	2299	NM_019112	10347	Hs.134514	NM_019112	HPRD:09255	ABCA7	ABCA-SSN|ABCX	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding
19-PTNLD28-TUMOR_peak_12475	chr10	25005223	25005530	+	9.82593	NA	intron (NM_020824, intron 2 of 25)	L2a|LINE|L2	7221	NM_020824	57584	Hs.524195	NM_020824	HPRD:06445	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
19-PTNLD28-TUMOR_peak_14522	chr10	80449152	80449302	+	9.82593	NA	Intergenic	Intergenic	377978	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40101	chr17	8313694	8313883	+	9.82593	NA	Intergenic	Intergenic	-12644	NM_001146684	643904	Hs.526550	NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
19-PTNLD28-TUMOR_peak_45228	chr18	33656195	33656338	+	9.82593	NA	Intergenic	Intergenic	-8893	NM_018170	55197	Hs.464912	NM_018170	HPRD:10134	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_14149	chr10	72513981	72514121	+	9.82593	NA	intron (NM_080722, intron 19 of 21)	L2b|LINE|L2	31106	NM_152710	219793	Hs.386698	NM_152710	HPRD:08500	TBATA	C10orf27|spatial	thymus, brain and testes associated	protein-coding
19-PTNLD28-TUMOR_peak_37159	chr16	29796315	29796761	+	9.82593	NA	Intergenic	CpG	-5496	NM_001256269	3835	Hs.612151	NM_007317	HPRD:04445	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
19-PTNLD28-TUMOR_peak_91110	chr7	5669760	5669876	+	9.82593	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	37382	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_14841	chr10	91174053	91174639	+	9.82593	NA	promoter-TSS (NM_012420)	promoter-TSS (NM_012420)	21	NM_012420	24138	Hs.252839	NM_012420	HPRD:17130	IFIT5	P58|RI58	interferon-induced protein with tetratricopeptide repeats 5	protein-coding
19-PTNLD28-TUMOR_peak_50970	chr2	9389646	9389849	+	9.82484	NA	intron (NM_003887, intron 1 of 27)	intron (NM_003887, intron 1 of 27)	42853	NM_003887	8853	Hs.555902	NM_003887	HPRD:04820	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
19-PTNLD28-TUMOR_peak_44554	chr18	10524832	10525006	+	9.82484	NA	promoter-TSS (NM_003826)	promoter-TSS (NM_003826)	-954	NM_003826	8774	Hs.464622	NM_003826	HPRD:04448	NAPG	GAMMASNAP	N-ethylmaleimide-sensitive factor attachment protein, gamma	protein-coding
19-PTNLD28-TUMOR_peak_50959	chr2	9346408	9347034	+	9.82399	NA	promoter-TSS (NM_001135191)	promoter-TSS (NM_001135191)	-173	NM_001135191	8853	Hs.555902	NM_003887	HPRD:04820	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
19-PTNLD28-TUMOR_peak_54507	chr2	101402474	101402671	+	9.82399	NA	Intergenic	Intergenic	-34041	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_81069	chr5	88082132	88082312	+	9.82399	NA	intron (NM_001193347, intron 4 of 11)	intron (NM_001193347, intron 4 of 11)	37522	NM_001193349	4208	Hs.649965	NM_002397	HPRD:02809	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
19-PTNLD28-TUMOR_peak_32727	chr15	28769878	28770055	+	9.82399	NA	intron (NR_033351, intron 12 of 17).2	intron (NR_033351, intron 12 of 17).2	8177	NR_033351	100132565	Hs.510812	NM_001012452	ENSG00000153684	GOLGA8F	-	golgin A8 family, member F	pseudo
19-PTNLD28-TUMOR_peak_41664	chr17	41917066	41917278	+	9.82368	NA	Intergenic	Intergenic	-6625	NR_003562	4356	Hs.396566	NM_001932	HPRD:03069	MPP3	DLG3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	protein-coding
19-PTNLD28-TUMOR_peak_19100	chr11	63742433	63742541	+	9.82368	NA	intron (NM_004074, intron 1 of 1)	CpG	408	NM_004074	1351	Hs.743989	NM_004074	HPRD:00468	COX8A	COX|COX8|COX8-2|COX8L|VIII|VIII-L	cytochrome c oxidase subunit VIIIA (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_108031	chrX	41193316	41193553	+	9.82368	NA	5' UTR (NM_001193416, exon 1 of 17)	5' UTR (NM_001193416, exon 1 of 17)	783	NM_001193416	1654	Hs.743263	NM_001356	HPRD:02154	DDX3X	DBX|DDX14|DDX3|HLP2	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_85743	chr6	18154889	18155012	+	9.82083	NA	promoter-TSS (NM_153042)	promoter-TSS (NM_153042)	446	NM_000367	7172	Hs.444319	NM_000367	HPRD:01760	TPMT	-	thiopurine S-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_47981	chr19	18041270	18041439	+	9.81117	NA	Intergenic	MER90|LTR|ERV1	-2470	NM_001136203	115098	Hs.100043	NM_138442	HPRD:14008	CCDC124	-	coiled-coil domain containing 124	protein-coding
19-PTNLD28-TUMOR_peak_99167	chr8	71580730	71580877	+	9.80800	NA	promoter-TSS (NM_001287259)	promoter-TSS (NM_001287259)	644	NM_016027	51110	Hs.118554	NM_016027	HPRD:13955	LACTB2	-	lactamase, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_32930	chr15	32893853	32894030	+	9.80800	NA	intron (NM_001282494, intron 13 of 18)	intron (NM_001282494, intron 13 of 18)	8284	NM_001282494	643699	Hs.672754	NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family, member N	protein-coding
19-PTNLD28-TUMOR_peak_66618	chr3	11623335	11623561	+	9.80763	NA	intron (NM_001284390, intron 4 of 6)	intron (NM_001284390, intron 4 of 6)	417	NM_001128220	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_66492	chr3	9938687	9938957	+	9.80763	NA	Intergenic	Intergenic	-5474	NM_153483	132014	Hs.390823	NM_144640	HPRD:17143	IL17RE	-	interleukin 17 receptor E	protein-coding
19-PTNLD28-TUMOR_peak_33780	chr15	59590537	59590764	+	9.80763	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	74421	NM_004998	4643	Hs.654506	NM_004998	HPRD:03281	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
19-PTNLD28-TUMOR_peak_13428	chr10	48180041	48180184	+	9.80598	NA	Intergenic	AluSz|SINE|Alu	-5727	NR_024495	642826	Hs.463017	NR_024495		BMS1P6	BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2	BMS1 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_48452	chr19	31160713	31161214	+	9.80598	NA	Intergenic	Intergenic	297635	NM_014717	9745	Hs.378901	NM_014717	HPRD:15825	ZNF536	-	zinc finger protein 536	protein-coding
19-PTNLD28-TUMOR_peak_17302	chr11	13232033	13232141	+	9.80598	NA	Intergenic	Intergenic	-67187	NM_001030273	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_84151	chr5	174178573	174178976	+	9.80598	NA	promoter-TSS (NR_039777)	promoter-TSS (NR_039777)	37	NR_039777	100616202		NR_039777	miRBase:MI0017261	MIR4634	-	microRNA 4634	ncRNA
19-PTNLD28-TUMOR_peak_5703	chr1	115595234	115595352	+	9.80598	NA	intron (NM_005725, intron 7 of 7)	intron (NM_005725, intron 7 of 7)	18726	NM_001277991	7252	Hs.406687	NM_000549	HPRD:11766	TSHB	TSH-B|TSH-BETA	thyroid stimulating hormone, beta	protein-coding
19-PTNLD28-TUMOR_peak_6807	chr1	151653001	151653115	+	9.80598	NA	intron (NM_030918, intron 7 of 11)	L2a|LINE|L2	35734	NM_001172648	11189	Hs.26047	NM_007185		CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP, Elav-like family member 3	protein-coding
19-PTNLD28-TUMOR_peak_46610	chr19	1848443	1848908	+	9.80598	NA	promoter-TSS (NM_020695)	promoter-TSS (NM_020695)	-223	NM_020695	57455	Hs.192477	NM_020695	HPRD:15478	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	REX1, RNA exonuclease 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_13584	chr10	51561832	51562017	+	9.80598	NA	intron (NM_002443, intron 3 of 3)	intron (NM_002443, intron 3 of 3)	-3184	NM_001145263	8031	Hs.643658	NM_005437	HPRD:03584	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
19-PTNLD28-TUMOR_peak_43716	chr17	76168515	76168937	+	9.80282	NA	3' UTR (NM_004710, exon 4 of 4)	3' UTR (NM_004710, exon 4 of 4)	4055	NM_004710	9144	Hs.464210	NM_004710	HPRD:04891	SYNGR2	-	synaptogyrin 2	protein-coding
19-PTNLD28-TUMOR_peak_26962	chr12	124873848	124874006	+	9.80235	NA	intron (NM_001077261, intron 18 of 47)	CpG	-52139	NR_106940	102466204		NR_106940		MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
19-PTNLD28-TUMOR_peak_63456	chr21	38639187	38639494	+	9.80235	NA	intron (NM_006052, intron 1 of 7)	CpG	493	NM_006052	10311	Hs.369488	NM_006052	HPRD:10390	DSCR3	DCRA|DSCRA	Down syndrome critical region gene 3	protein-coding
19-PTNLD28-TUMOR_peak_47861	chr19	17008534	17008814	+	9.80205	NA	intron (NM_015692, intron 38 of 41)	CpG-13190	8848	NM_003950	9002	Hs.137574	NM_003950		F2RL3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_46658	chr19	2474677	2474861	+	9.80205	NA	Intergenic	CpG	-1354	NM_015675	4616	Hs.110571	NM_015675	HPRD:05382	GADD45B	GADD45BETA|MYD118	growth arrest and DNA-damage-inducible, beta	protein-coding
19-PTNLD28-TUMOR_peak_82548	chr5	139038729	139038940	+	9.80205	NA	intron (NM_016463, intron 1 of 2)	intron (NM_016463, intron 1 of 2)	10533	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_33038	chr15	35280447	35280611	+	9.80205	NA	promoter-TSS (NM_014106)	promoter-TSS (NM_014106)	-32	NM_014106	54989	Hs.744990	NM_014106	HPRD:16918	ZNF770	PRO1914	zinc finger protein 770	protein-coding
19-PTNLD28-TUMOR_peak_59100	chr2	238499394	238499549	+	9.79739	NA	non-coding (NR_033308, exon 1 of 5)	non-coding (NR_033308, exon 1 of 5)	298	NM_022449	64284	Hs.44278	NM_022449	HPRD:11468	RAB17	-	RAB17, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_96381	chr7	151078813	151079021	+	9.79739	NA	intron (NM_198285, intron 5 of 5)	CpG	-27330	NR_034012	100131176	Hs.659231	NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40057	chr17	8042725	8043032	+	9.79739	NA	TTS (NM_002616)	TTS (NM_002616)	5511	NR_106943	102465532		NR_106943		MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
19-PTNLD28-TUMOR_peak_63309	chr21	35858129	35858280	+	9.79711	NA	intron (NM_001270402, intron 1 of 2)	intron (NM_001270402, intron 1 of 2)	25409	NM_001270403	3753	Hs.121495	NM_000219	HPRD:01442	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel, Isk-related family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_69300	chr3	90006990	90007239	+	9.79711	NA	Intergenic	L1PA2|LINE|L1	850440	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_76951	chr4	124790912	124791018	+	9.79711	NA	intron (NR_027105, intron 3 of 4)	intron (NR_027105, intron 3 of 4)	95546	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_20045	chr11	74871463	74871785	+	9.79711	NA	intron (NM_001145211, intron 1 of 13)	intron (NM_001145211, intron 1 of 13)	780	NM_001145211	11309	Hs.7884	NM_007256	HPRD:07061	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family, member 2B1	protein-coding
19-PTNLD28-TUMOR_peak_65504	chr22	38811781	38811890	+	9.79711	NA	Intergenic	Intergenic	-16904	NR_002821	400927	Hs.720223	NR_002821		LOC400927	-	TPTE and PTEN homologous inositol lipid phosphatase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102624	chr9	31909177	31909377	+	9.79711	NA	Intergenic	LTR3B|LTR|ERVK	-475324	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_13204	chr10	43751425	43751521	+	9.79711	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	10894	NM_145313	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_83193	chr5	149814194	149814364	+	9.79711	NA	Intergenic	Intergenic	15040	NM_005617	6208	Hs.744846	NM_005617	HPRD:00562	RPS14	EMTB|S14	ribosomal protein S14	protein-coding
19-PTNLD28-TUMOR_peak_95395	chr7	131630219	131630358	+	9.79639	NA	intron (NR_110836, intron 5 of 5)	CpG	35309	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_59129	chr2	239007218	239007378	+	9.79639	NA	non-coding (NR_037904, exon 19 of 19)	non-coding (NR_037904, exon 19 of 19)	-1653	NM_194312	339768	Hs.127724	NM_194312	HPRD:14170	ESPNL	-	espin-like	protein-coding
19-PTNLD28-TUMOR_peak_38165	chr16	61835774	61835982	+	9.79639	NA	intron (NM_001796, intron 7 of 11)	L1PA2|LINE|L1	234861	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_42577	chr17	56381758	56381946	+	9.79639	NA	intron (NM_001261835, intron 30 of 31)	intron (NM_001261835, intron 30 of 31)	-20959	NR_038410	100506779	Hs.718477	NR_038410	ENSG00000265148	BZRAP1-AS1	-	BZRAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51874	chr2	29220214	29220436	+	9.79639	NA	intron (NM_199280, intron 2 of 19)	L2b|LINE|L2	16161	NM_199280	165186	Hs.525977	NM_199280	HPRD:14110	FAM179A	-	family with sequence similarity 179, member A	protein-coding
19-PTNLD28-TUMOR_peak_105522	chr9	116205281	116205472	+	9.79639	NA	Intergenic	L1PA7|LINE|L1	-1633	NM_144488	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_81214	chr5	95066788	95067246	+	9.79639	NA	5' UTR (NM_014899, exon 1 of 12)	5' UTR (NM_014899, exon 1 of 12)	167	NM_014899	22836	Hs.445030	NM_014899	HPRD:09557	RHOBTB3	-	Rho-related BTB domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_42728	chr17	59415335	59415542	+	9.79639	NA	intron (NM_017679, intron 22 of 23)	L2b|LINE|L2	61529	NR_125749	103689912	Hs.410998	NR_125749		TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30732	chr14	64320692	64320912	+	9.79614	NA	intron (NM_182914, intron 1 of 115)	intron (NM_182914, intron 1 of 115)	1119	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_46286	chr18	73350944	73351113	+	9.79614	NA	Intergenic	Intergenic	-211439	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
19-PTNLD28-TUMOR_peak_87178	chr6	37136734	37136923	+	9.79410	NA	Intergenic	Intergenic	-1094	NM_002648	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_92262	chr7	44174655	44174748	+	9.78974	NA	Intergenic	AluJb|SINE|Alu	6215	NM_021223	58498	Hs.75636	NM_021223	HPRD:10105	MYL7	MYL2A|MYLC2A	myosin, light chain 7, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_92906	chr7	65449338	65449531	+	9.78974	NA	Intergenic	LTR32|LTR|ERVL	-2133	NR_120531	2990	Hs.255230	NM_000181	HPRD:02018	GUSB	BG|MPS7	glucuronidase, beta	protein-coding
19-PTNLD28-TUMOR_peak_61718	chr20	48359570	48359696	+	9.78974	NA	Intergenic	Intergenic	-29212	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_103379	chr9	46908560	46908689	+	9.78974	NA	Intergenic	MER52A|LTR|ERV1	144833	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_54380	chr2	98487054	98487192	+	9.78974	NA	intron (NM_015348, intron 4 of 40)	intron (NM_015348, intron 4 of 40)	125231	NM_015348	23505	Hs.469376	NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
19-PTNLD28-TUMOR_peak_13235	chr10	44162795	44163046	+	9.78974	NA	intron (NR_038867, intron 1 of 4)	CpG	-18594	NM_006973	7580	Hs.522885	NM_006973	HPRD:01924	ZNF32	KOX30	zinc finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_23505	chr12	27175647	27175818	+	9.78974	NA	non-coding (NR_073464, exon 1 of 4)	non-coding (NR_073464, exon 1 of 4)	277	NR_073463	9412	Hs.286145	NM_004264	HPRD:09156	MED21	SRB7|SURB7|hSrb7	mediator complex subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_24734	chr12	57230958	57231067	+	9.78854	NA	Intergenic	MER50-int|LTR|ERV1	74010	NM_003725	8630	Hs.524513	NM_003725	HPRD:09431	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
19-PTNLD28-TUMOR_peak_57150	chr2	177594622	177594870	+	9.78854	NA	Intergenic	Intergenic	92264	NR_110599	102724224	Hs.663125	NR_110599		LOC102724224	-	uncharacterized LOC102724224	ncRNA
19-PTNLD28-TUMOR_peak_43015	chr17	64652091	64652276	+	9.78854	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-131007	NR_030364	693219		NR_030364		MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
19-PTNLD28-TUMOR_peak_67737	chr3	42743062	42743163	+	9.78854	NA	promoter-TSS (NR_027753)	promoter-TSS (NR_027753)	-99	NR_027753	57467	Hs.476041	NM_020707	HPRD:12166	HHATL	C3orf3|GUP1|MBOAT3|MSTP002|OACT3	hedgehog acyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_65594	chr22	39955554	39955724	+	9.78854	NA	Intergenic	Intergenic	-11119	NM_021096	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_87719	chr6	44727682	44727773	+	9.78854	NA	Intergenic	L1PA3|LINE|L1	324349	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_36385	chr16	13470112	13470334	+	9.78854	NA	Intergenic	Intergenic	474746	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_32523	chr15	22425652	22425817	+	9.78854	NA	Intergenic	Intergenic	12272	NR_028067	390539	Hs.666555	NR_028067	ENSG00000259435	OR4N3P	OR15-2	olfactory receptor, family 4, subfamily N, member 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109285	chrX	118533227	118533671	+	9.78854	NA	exon (NM_145305, exon 1 of 5)	exon (NM_145305, exon 1 of 5)	191	NM_145305	203427	Hs.496658	NM_145305	HPRD:06617	SLC25A43	-	solute carrier family 25, member 43	protein-coding
19-PTNLD28-TUMOR_peak_104249	chr9	87692267	87692474	+	9.78854	NA	Intergenic	L1PA3|LINE|L1	407078	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_99346	chr8	82193635	82193833	+	9.78854	NA	intron (NM_001444, intron 1 of 3)	intron (NM_001444, intron 1 of 3)	1016	NM_001444	2171	Hs.408061	NM_001444	HPRD:05524	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5 (psoriasis-associated)	protein-coding
19-PTNLD28-TUMOR_peak_90981	chr7	3290378	3290892	+	9.78854	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-50445	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_93126	chr7	72385674	72385808	+	9.78854	NA	intron (NM_001257190, intron 4 of 15)	intron (NM_001257190, intron 4 of 15)	24575	NM_172020	9883	Hs.655217	NM_172020	HPRD:11448	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
19-PTNLD28-TUMOR_peak_67118	chr3	23021973	23022109	+	9.78854	NA	Intergenic	MER119|DNA|hAT-Charlie	-222743	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_48750	chr19	36523812	36523928	+	9.78854	NA	promoter-TSS (NM_015526)	promoter-TSS (NM_015526)	-73	NM_015526	25999	Hs.466539	NM_015526	HPRD:09572	CLIP3	CLIPR-59|CLIPR59|RSNL1	CAP-GLY domain containing linker protein 3	protein-coding
19-PTNLD28-TUMOR_peak_6357	chr1	145935843	145935976	+	9.78854	NA	non-coding (NR_111936, exon 5 of 10).2	non-coding (NR_111936, exon 5 of 10).2	9568	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_45988	chr18	56885354	56885535	+	9.78854	NA	Intergenic	Intergenic	-1956	NM_001012513	2922	Hs.153444	NM_002091	HPRD:08845	GRP	BN|GRP-10|preproGRP|proGRP	gastrin-releasing peptide	protein-coding
19-PTNLD28-TUMOR_peak_35304	chr15	93257848	93258223	+	9.78854	NA	Intergenic	CpG	-59004	NM_207446	400451	Hs.27373	NM_207446	HPRD:14220	FAM174B	-	family with sequence similarity 174, member B	protein-coding
19-PTNLD28-TUMOR_peak_53383	chr2	71016853	71016965	+	9.78854	NA	intron (NM_001004311, intron 1 of 4)	intron (NM_001004311, intron 1 of 4)	866	NM_001004311	344018	Hs.407636	NM_001004311	HPRD:12279	FIGLA	BHLHC8|FIGALPHA|POF6	folliculogenesis specific basic helix-loop-helix	protein-coding
19-PTNLD28-TUMOR_peak_11431	chr1	245082155	245082384	+	9.78854	NA	Intergenic	Intergenic	-50902	NM_032328	84288	Hs.134857	NM_032328	HPRD:14423	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
19-PTNLD28-TUMOR_peak_34721	chr15	79049526	79049688	+	9.78854	NA	Intergenic	Intergenic	5228	NR_036495	646938	Hs.449783	NR_036495	ENSG00000238166	LOC646938	-	TBC1 domain family, member 2B pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52417	chr2	43484652	43484781	+	9.78854	NA	intron (NM_022065, intron 36 of 37)	intron (NM_022065, intron 36 of 37)	30366	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_101813	chr8	146064414	146064574	+	9.78854	NA	intron (NM_001282796, intron 4 of 4)	intron (NM_001282796, intron 4 of 4)	11591	NM_001282795	7553	Hs.493218	NM_003416	HPRD:01918	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
19-PTNLD28-TUMOR_peak_26374	chr12	112825285	112825413	+	9.78854	NA	Intergenic	Intergenic	-5453	NM_001109662	283450	Hs.530943	NM_173813	HPRD:08170	HECTD4	C12orf51|POTAGE	HECT domain containing E3 ubiquitin protein ligase 4	protein-coding
19-PTNLD28-TUMOR_peak_48850	chr19	38471327	38471463	+	9.78854	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	73534	NM_015073	23094	Hs.655502	NM_015073	HPRD:18755	SIPA1L3	SPAL3	signal-induced proliferation-associated 1 like 3	protein-coding
19-PTNLD28-TUMOR_peak_71202	chr3	138821512	138821664	+	9.78854	NA	Intergenic	Intergenic	-1439	NR_026783	60467	Hs.512673	NM_021812	HPRD:16559	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_68571	chr3	57986536	57986800	+	9.78643	NA	Intergenic	Intergenic	-7459	NM_001457	2317	Hs.476448	NM_001457	HPRD:04543	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B, beta	protein-coding
19-PTNLD28-TUMOR_peak_51086	chr2	10588817	10588931	+	9.78102	NA	promoter-TSS (NM_001287190)	promoter-TSS (NM_001287190)	-194	NM_001287188	4953	Hs.467701	NM_002539	HPRD:01324	ODC1	ODC	ornithine decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_85510	chr6	13711086	13711251	+	9.78102	NA	exon (NM_005493, exon 1 of 14)	exon (NM_005493, exon 1 of 14)	628	NM_005493	10048	Hs.708182	NM_005493	HPRD:04835	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_87484	chr6	42107844	42108008	+	9.78051	NA	intron (NM_001164446, intron 1 of 4)	intron (NM_001164446, intron 1 of 4)	2789	NM_001164446	647024	Hs.444277	NM_001164446	ENSG00000188112	C6orf132	bA7K24.2	chromosome 6 open reading frame 132	protein-coding
19-PTNLD28-TUMOR_peak_2156	chr1	33177901	33178130	+	9.77959	NA	Intergenic	Intergenic	-9654	NM_030786	81493	Hs.712631	NM_030786	HPRD:18134	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
19-PTNLD28-TUMOR_peak_58466	chr2	220040992	220041432	+	9.77959	NA	intron (NM_015680, intron 1 of 7)	CpG	490	NM_015680	27013	Hs.4973	NM_015680	HPRD:10780	CNPPD1	C2orf24|CGI-57	cyclin Pas1/PHO80 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33856	chr15	62352064	62352206	+	9.77779	NA	intron (NM_001018088, intron 1 of 81)	intron (NM_001018088, intron 1 of 81)	529	NM_017684	54832	Hs.511668	NM_017684	HPRD:12323	VPS13C	-	vacuolar protein sorting 13 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_88321	chr6	74160578	74160696	+	9.77779	NA	intron (NM_138441, intron 1 of 4)	AluY|SINE|Alu	1406	NM_138441	115004	Hs.658405	NM_138441		MB21D1	C6orf150|cGAS|h-cGAS	Mab-21 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_104159	chr9	85834152	85834307	+	9.77779	NA	Intergenic	Intergenic	47973	NM_001244962	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_54972	chr2	112452335	112452685	+	9.77779	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	189231	NM_022662	64682	Hs.436527	NM_022662	HPRD:09769	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_64094	chr21	47401169	47401474	+	9.77779	NA	promoter-TSS (NM_001848)	promoter-TSS (NM_001848)	-342	NM_001848	1291	Hs.474053	NM_001848	HPRD:00370	COL6A1	OPLL	collagen, type VI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_103826	chr9	74977718	74977846	+	9.77681	NA	intron (NM_001102421, intron 1 of 5)	intron (NM_001102421, intron 1 of 5)	1726	NM_001278243	7763	Hs.406096	NM_006007	HPRD:05302	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger, AN1-type domain 5	protein-coding
19-PTNLD28-TUMOR_peak_14500	chr10	79929857	79930288	+	9.77560	NA	Intergenic	Intergenic	-78310	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
19-PTNLD28-TUMOR_peak_16106	chr10	125865923	125866262	+	9.77560	NA	Intergenic	Intergenic	-12969	NM_001270765	51363	Hs.287537	NM_014863	HPRD:12203	CHST15	BRAG|GALNAC4S-6ST	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_29349	chr14	21159257	21159424	+	9.77560	NA	intron (NM_194431, intron 1 of 1)	intron (NM_194431, intron 1 of 1)	2404	NM_194431	6038	Hs.283749	NM_002937	HPRD:03018	RNASE4	RAB1|RNS4	ribonuclease, RNase A family, 4	protein-coding
19-PTNLD28-TUMOR_peak_38993	chr16	81792106	81792224	+	9.77560	NA	Intergenic	L1MB8|LINE|L1	-20698	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_72661	chr3	182458640	182458737	+	9.77560	NA	Intergenic	Intergenic	-52603	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_57718	chr2	200946058	200946187	+	9.77560	NA	Intergenic	Intergenic	-125663	NR_004862	129450	Hs.204619	NM_152382	HPRD:08232	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
19-PTNLD28-TUMOR_peak_25873	chr12	103311032	103311290	+	9.77560	NA	5' UTR (NM_000277, exon 1 of 13)	5' UTR (NM_000277, exon 1 of 13)	220	NM_000277	5053	Hs.603740	NM_000277	HPRD:08943	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
19-PTNLD28-TUMOR_peak_29393	chr14	21769206	21769312	+	9.77560	NA	exon (NM_020366, exon 3 of 24)	exon (NM_020366, exon 3 of 24)	13123	NM_020366	57096	Hs.126035	NM_020366	HPRD:05673	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11695	chr10	3281940	3282037	+	9.77560	NA	Intergenic	Intergenic	-66955	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_1861	chr1	28736426	28736523	+	9.77560	NA	intron (NM_001048183, intron 2 of 13)	AluSx3|SINE|Alu	-28187	NM_023923	65979	Hs.225641	NM_023923	HPRD:07816	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
19-PTNLD28-TUMOR_peak_109146	chrX	109083892	109084049	+	9.77560	NA	Intergenic	Intergenic	-107349	NM_004458	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_27993	chr13	42222559	42222744	+	9.77560	NA	intron (NM_015058, intron 37 of 44)	intron (NM_015058, intron 37 of 44)	-80120	NR_049803	100847026		NR_049803		MIR5006	-	microRNA 5006	ncRNA
19-PTNLD28-TUMOR_peak_106407	chr9	132752126	132752288	+	9.77560	NA	intron (NM_015033, intron 2 of 16)	AluJb|SINE|Alu	53266	NM_015033	23048	Hs.189409	NM_015033	HPRD:10446	FNBP1	FBP17	formin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_37813	chr16	52036046	52036240	+	9.77560	NA	Intergenic	Intergenic	71704	NM_001242473	388276	Hs.534669	NM_001242473	ENSG00000261190	C16orf97	-	chromosome 16 open reading frame 97	protein-coding
19-PTNLD28-TUMOR_peak_6414	chr1	146570078	146570235	+	9.77560	NA	TTS (NR_103466)	TTS (NR_103466)	-13853	NR_121645	101447996		NR_121645		RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
19-PTNLD28-TUMOR_peak_103267	chr9	43844225	43844334	+	9.77560	NA	exon (NM_001201380, exon 10 of 24)	exon (NM_001201380, exon 10 of 24)	159083	NR_111893	643827	Hs.521495	NM_001012280		CNTNAP3P2	-	contactin associated protein-like 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_65172	chr22	32196067	32196256	+	9.77560	NA	intron (NR_110988, intron 14 of 38)	MER41C|LTR|ERV1	45313	NM_014662	9681	Hs.435022	NM_014662	HPRD:16795	DEPDC5	DEP.5|FFEVF	DEP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_86318	chr6	28442222	28442343	+	9.77560	NA	Intergenic	Intergenic	-31003	NM_001012455	222696	Hs.721841	NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
19-PTNLD28-TUMOR_peak_74998	chr4	39367867	39368121	+	9.77560	NA	promoter-TSS (NM_001204747)	promoter-TSS (NM_001204747)	7	NM_001204747	5981	Hs.507475	NM_002913	HPRD:00024	RFC1	A1|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C (activator 1) 1, 145kDa	protein-coding
19-PTNLD28-TUMOR_peak_109258	chrX	117125879	117126101	+	9.77560	NA	intron (NM_001168303, intron 1 of 6)	intron (NM_001168303, intron 1 of 6)	-6614	NM_001168299	90293	Hs.348262	NM_033495	HPRD:06461	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
19-PTNLD28-TUMOR_peak_72526	chr3	177610184	177610389	+	9.77560	NA	intron (NR_110826, intron 1 of 2)	SVA_D|Other|Other	75633	NR_110826	102724550	Hs.570526	NR_110826		LOC102724550	-	uncharacterized LOC102724550	ncRNA
19-PTNLD28-TUMOR_peak_40931	chr17	29721705	29721834	+	9.77560	NA	intron (NM_032932, intron 1 of 14)	L3|LINE|CR1	3127	NM_032932	84440	Hs.406788	NM_032932	HPRD:11466	RAB11FIP4	RAB11-FIP4	RAB11 family interacting protein 4 (class II)	protein-coding
19-PTNLD28-TUMOR_peak_45299	chr18	35363839	35363970	+	9.77560	NA	Intergenic	Intergenic	126806	NR_036202	100422857		NR_036202	miRBase:MI0015847	MIR4318	-	microRNA 4318	ncRNA
19-PTNLD28-TUMOR_peak_11669	chr10	2953608	2953866	+	9.77560	NA	Intergenic	Intergenic	-155975	NM_002627	5214	Hs.26010	NM_002627	HPRD:01384	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
19-PTNLD28-TUMOR_peak_35006	chr15	85641026	85641454	+	9.77560	NA	exon (NM_002605, exon 9 of 22)	exon (NM_002605, exon 9 of 22)	107278	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_32993	chr15	33992975	33993179	+	9.77560	NA	intron (NM_001243996, intron 41 of 102)	intron (NM_001243996, intron 41 of 102)	-268012	NM_012125	1133	Hs.584747	NM_012125	HPRD:00331	CHRM5	HM5	cholinergic receptor, muscarinic 5	protein-coding
19-PTNLD28-TUMOR_peak_22977	chr12	9397001	9397175	+	9.77560	NA	Intergenic	MIRb|SINE|MIR	4489	NR_036466	100499405	Hs.182314	NR_036466	ENSG00000237248	LINC00987	-	long intergenic non-protein coding RNA 987	ncRNA
19-PTNLD28-TUMOR_peak_98722	chr8	52589631	52590114	+	9.77560	NA	intron (NM_144651, intron 1 of 22)	intron (NM_144651, intron 1 of 22)	132133	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_7818	chr1	164027490	164027683	+	9.77560	NA	Intergenic	Intergenic	-501011	NM_001204963	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_93578	chr7	77326754	77326952	+	9.77505	NA	promoter-TSS (NR_038361)	promoter-TSS (NR_038361)	-191	NR_038361	100505854	Hs.72451	NR_038361		APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_73406	chr3	194411825	194411998	+	9.77505	NA	Intergenic	Intergenic	5289	NM_153690	131583	Hs.435080	NM_153690	HPRD:13308	FAM43A	-	family with sequence similarity 43, member A	protein-coding
19-PTNLD28-TUMOR_peak_50642	chr1_gl000191_random	102183	102563	+	9.77356	NA	Intergenic	SVA_D|Other|Other	-52092	NM_054016	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_35112	chr15	89437631	89437749	+	9.77356	NA	intron (NM_178232, intron 1 of 4)	intron (NM_178232, intron 1 of 4)	1080	NM_178232	145864	Hs.447530	NM_178232	HPRD:13629	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
19-PTNLD28-TUMOR_peak_65905	chr22	45557985	45558193	+	9.77356	NA	intron (NR_038956, intron 1 of 2)	LTR7Y|LTR|ERV1	1573	NR_038956	100506714	Hs.189902	NR_038956		NUP50-AS1	-	NUP50 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_4481	chr1	79116907	79117145	+	9.77356	NA	intron (NM_006417, intron 2 of 8)	MER1A|DNA|hAT-Charlie	1549	NM_006417	10561	Hs.82316	NM_006417	HPRD:09998	IFI44	MTAP44|TLDC5|p44	interferon-induced protein 44	protein-coding
19-PTNLD28-TUMOR_peak_43655	chr17	75446015	75446163	+	9.77214	NA	promoter-TSS (NM_001113496)	promoter-TSS (NM_001113496)	-524	NM_001113496	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_102802	chr9	34633998	34634127	+	9.77214	NA	TTS (NM_147157)	TTS (NM_147157)	3761	NR_104108	10280	Hs.522087	NM_005866	HPRD:03580	SIGMAR1	ALS16|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_64385	chr22	19930814	19930936	+	9.77214	NA	intron (NM_000754, intron 1 of 5)	MER31-int|LTR|ERV1	-1360	NM_001282512	10587	Hs.443430	NM_006440	HPRD:05921	TXNRD2	SELZ|TR|TR-BETA|TR3|TRXR2	thioredoxin reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_96466	chr7	152161964	152162124	+	9.77020	NA	non-coding (NR_027387, exon 1 of 1)	non-coding (NR_027387, exon 1 of 1)	835	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
19-PTNLD28-TUMOR_peak_11006	chr1	234734842	234735013	+	9.77020	NA	Intergenic	Intergenic	10344	NM_182972	359948	Hs.350268	NM_182972	HPRD:17160	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_39849	chr17	4843803	4843944	+	9.76855	NA	promoter-TSS (NM_001165418)	promoter-TSS (NM_001165418)	243	NM_015528	26001	Hs.7158	NM_015528	HPRD:15261	RNF167	5730408C10Rik|RING105	ring finger protein 167	protein-coding
19-PTNLD28-TUMOR_peak_12986	chr10	38146253	38146409	+	9.76855	NA	5' UTR (NM_001267607, exon 1 of 7)	5' UTR (NM_001267607, exon 1 of 7)	233	NM_001267607	57209	Hs.528423	NM_021045	HPRD:15757	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
19-PTNLD28-TUMOR_peak_104246	chr9	87655717	87656003	+	9.76855	NA	Intergenic	Intergenic	370568	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_20427	chr11	86171686	86172047	+	9.76855	NA	intron (NM_001014811, intron 7 of 13)	intron (NM_001014811, intron 7 of 13)	86088	NM_021827	60494	Hs.144913	NM_021827	HPRD:08032	CCDC81	-	coiled-coil domain containing 81	protein-coding
19-PTNLD28-TUMOR_peak_91165	chr7	6414369	6414485	+	9.76855	NA	intron (NM_006908, intron 1 of 5)	CpG	301	NM_018890	5879	Hs.413812	NM_006908	HPRD:03627	RAC1	Rac-1|TC-25|p21-Rac1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	protein-coding
19-PTNLD28-TUMOR_peak_4115	chr1	65613135	65613372	+	9.76019	NA	promoter-TSS (NM_013410)	promoter-TSS (NM_013410)	21	NM_203464	205	Hs.10862	NM_013410	HPRD:00048	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_37338	chr16	31213705	31213887	+	9.76019	NA	exon (NM_013258, exon 1 of 3)	exon (NM_013258, exon 1 of 3)	301	NM_145182	29108	Hs.499094	NM_013258	HPRD:06020	PYCARD	ASC|CARD5|TMS|TMS-1|TMS1	PYD and CARD domain containing	protein-coding
19-PTNLD28-TUMOR_peak_80292	chr5	65222215	65222339	+	9.76019	NA	promoter-TSS (NM_001253697)	promoter-TSS (NM_001253697)	-105	NM_001253701	55914	Hs.591774	NM_018695	HPRD:06090	ERBB2IP	ERBIN|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_95501	chr7	134374870	134374992	+	9.76019	NA	Intergenic	Intergenic	43400	NM_001293085	669	Hs.198365	NM_001724	HPRD:01961	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
19-PTNLD28-TUMOR_peak_69565	chr3	106954805	106955035	+	9.75739	NA	intron (NR_028303, intron 1 of 3)	intron (NR_028303, intron 1 of 3)	4565	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_12450	chr10	24649591	24649695	+	9.75739	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	85029	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_7289	chr1	156203700	156203831	+	9.75739	NA	intron (NM_001199663, intron 3 of 5)	FLAM_A|SINE|Alu	-8186	NM_199173	632	Hs.654541	NM_199173		BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate (gla) protein	protein-coding
19-PTNLD28-TUMOR_peak_9581	chr1	205030820	205031005	+	9.75739	NA	intron (NM_005076, intron 8 of 22)	intron (NM_005076, intron 8 of 22)	18572	NM_005076	6900	Hs.519220	NM_005076	HPRD:01826	CNTN2	AXT|FAME5|TAG-1|TAX|TAX1	contactin 2 (axonal)	protein-coding
19-PTNLD28-TUMOR_peak_7335	chr1	156594229	156594331	+	9.75739	NA	intron (NM_021817, intron 5 of 6)	CpG-1799	5194	NM_021817	60484	Hs.410719	NM_021817	HPRD:17088	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
19-PTNLD28-TUMOR_peak_37298	chr16	30961377	30961702	+	9.75717	NA	intron (NM_152288, intron 1 of 1)	MIR3|SINE|MIR	1134	NM_152288	93129	Hs.745104	NM_152288	HPRD:14431	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_85474	chr6	13356241	13356445	+	9.75594	NA	Intergenic	Intergenic	-27528	NM_001258457	51256	Hs.484678	NM_016495	HPRD:18165	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family, member 7	protein-coding
19-PTNLD28-TUMOR_peak_24795	chr12	58120342	58120633	+	9.75391	NA	exon (NM_014770, exon 18 of 18)	exon (NM_014770, exon 18 of 18)	464	NR_027032	100130776	Hs.656080	NR_027032	ENSG00000255737	AGAP2-AS1	-	AGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69562	chr3	106931146	106931342	+	9.75391	NA	intron (NR_028303, intron 1 of 3)	intron (NR_028303, intron 1 of 3)	28241	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_46269	chr18	72837130	72837915	+	9.75391	NA	Intergenic	CpG	83759	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_13236	chr10	44163618	44163895	+	9.75391	NA	intron (NR_038867, intron 1 of 4)	intron (NR_038867, intron 1 of 4)	-19430	NM_006973	7580	Hs.522885	NM_006973	HPRD:01924	ZNF32	KOX30	zinc finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_93900	chr7	91196452	91196774	+	9.75391	NA	Intergenic	Intergenic	302830	NM_003505	8321	Hs.94234	NM_003505	HPRD:04558	FZD1	-	frizzled class receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_106426	chr9	132949590	132949703	+	9.75391	NA	intron (NM_014286, intron 1 of 7)	intron (NM_014286, intron 1 of 7)	-13226	NM_001128826	23413	Hs.642946	NM_014286	HPRD:04500	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
19-PTNLD28-TUMOR_peak_46576	chr19	1262366	1262634	+	9.75352	NA	Intergenic	Intergenic	-6765	NM_001300829	1153	Hs.618145	NM_001280	HPRD:08375	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
19-PTNLD28-TUMOR_peak_85009	chr6	4806448	4806552	+	9.75186	NA	intron (NM_004824, intron 1 of 6)	intron (NM_004824, intron 1 of 6)	29820	NM_004824	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_99699	chr8	101156242	101156367	+	9.75186	NA	intron (NM_001029860, intron 1 of 4)	intron (NM_001029860, intron 1 of 4)	1795	NM_001029860	286151	Hs.339577	NM_001029860	HPRD:18777	FBXO43	EMI2|ERP1|FBX43	F-box protein 43	protein-coding
19-PTNLD28-TUMOR_peak_98729	chr8	52772081	52772257	+	9.75186	NA	intron (NM_001286783, intron 1 of 5)	intron (NM_001286783, intron 1 of 5)	39577	NM_001286782	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_91809	chr7	29648957	29649064	+	9.75186	NA	Intergenic	Intergenic	45583	NM_175887	222171	Hs.91109	NM_175887	HPRD:14136	PRR15	-	proline rich 15	protein-coding
19-PTNLD28-TUMOR_peak_38854	chr16	78717965	78718188	+	9.75186	NA	intron (NM_001291997, intron 7 of 7)	MLT1M|LTR|ERVL-MaLR	584766	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_63785	chr21	44084330	44084548	+	9.75186	NA	intron (NM_001001575, intron 1 of 14)	intron (NM_001001575, intron 1 of 14)	10577	NM_001001572	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_62857	chr21	18264204	18264584	+	9.75186	NA	Intergenic	L2a|LINE|L2	301837	NR_029694	406912		NR_029694	miRBase:MI0000470	MIR125B2	MIRN125B2	microRNA 125b-2	ncRNA
19-PTNLD28-TUMOR_peak_90332	chr6	159463704	159463857	+	9.75186	NA	promoter-TSS (NM_001278733)	promoter-TSS (NM_001278733)	-395	NM_001278733	117289	Hs.529984	NM_054114	HPRD:18143	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_17264	chr11	12791401	12791572	+	9.75186	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	95517	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_98457	chr8	42110240	42110345	+	9.75186	NA	Intergenic	L1P1|LINE|L1	-18528	NM_001242778	3551	Hs.597664	NM_001556	HPRD:04462	IKBKB	IKK-beta|IKK2|IKKB|IMD15|NFKBIKB	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	protein-coding
19-PTNLD28-TUMOR_peak_21320	chr11	114925949	114926182	+	9.75186	NA	Intergenic	Intergenic	376865	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28312	chr13	52768464	52768742	+	9.75186	NA	promoter-TSS (NR_002816)	promoter-TSS (NR_002816)	-1	NR_002816	100887750	Hs.553878	NR_002816	ENSG00000243406	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_95213	chr7	129304974	129305161	+	9.75186	NA	intron (NM_001293164, intron 2 of 9)	intron (NM_001293164, intron 2 of 9)	35148	NM_001040110	4899	Hs.654363	NM_005011	HPRD:02930	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_82008	chr5	128300764	128301256	+	9.75186	NA	promoter-TSS (NM_014031)	promoter-TSS (NM_014031)	-200	NM_014031	28965	Hs.49765	NM_014031	HPRD:09173	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_2187	chr1	33429412	33429550	+	9.74844	NA	intron (NM_001300826, intron 1 of 8)	intron (NM_001300826, intron 1 of 8)	933	NM_153341	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_33284	chr15	42263771	42263945	+	9.74800	NA	intron (NM_139265, intron 1 of 5)	intron (NM_139265, intron 1 of 5)	897	NM_139265	30844	Hs.143703	NM_139265	HPRD:10435	EHD4	PAST4	EH-domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_74106	chr4	5368139	5368356	+	9.74800	NA	intron (NM_018401, intron 4 of 11)	intron (NM_018401, intron 4 of 11)	-158636	NM_005750	10141	Hs.177972	NM_005750	HPRD:12826	C4orf6	aC1	chromosome 4 open reading frame 6	protein-coding
19-PTNLD28-TUMOR_peak_70242	chr3	123420030	123420157	+	9.74800	NA	intron (NM_053025, intron 17 of 33)	(A)n|Simple_repeat|Simple_repeat	11602	NR_046629	100873940	Hs.667316	NR_046629		MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_24976	chr12	64574819	64575060	+	9.74643	NA	Intergenic	Intergenic	41137	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_6739	chr1	151104518	151104625	+	9.74643	NA	3' UTR (NM_030913, exon 19 of 19)	3' UTR (NM_030913, exon 19 of 19)	14569	NM_001178061	10500	Hs.516316	NM_030913	HPRD:10220	SEMA6C	SEMAY|m-SemaY|m-SemaY2	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
19-PTNLD28-TUMOR_peak_72230	chr3	169487095	169487386	+	9.74099	NA	exon (NM_032487, exon 1 of 2)	exon (NM_032487, exon 1 of 2)	443	NM_032487	84517	Hs.135411	NM_032487	HPRD:12253	ACTRT3	ARP-T3|ARPM1	actin-related protein T3	protein-coding
19-PTNLD28-TUMOR_peak_92133	chr7	41046325	41046550	+	9.74082	NA	Intergenic	Intergenic	-26900	NR_110831	101928744	Hs.639767	NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
19-PTNLD28-TUMOR_peak_37193	chr16	30015802	30016284	+	9.74082	NA	TTS (NM_003586)	TTS (NM_003586)	6358	NM_003586	8448	Hs.355281	NM_003586	HPRD:05195	DOC2A	Doc2	double C2-like domains, alpha	protein-coding
19-PTNLD28-TUMOR_peak_33823	chr15	60683419	60683637	+	9.74082	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	6657	NM_001002858	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_75758	chr4	77379204	77379307	+	9.74082	NA	intron (NM_020859, intron 1 of 10)	MSTA|LTR|ERVL-MaLR	23002	NM_020859	57619	Hs.702168	NM_020859	HPRD:07053	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
19-PTNLD28-TUMOR_peak_13393	chr10	47249170	47249313	+	9.74082	NA	Intergenic	AluSz|SINE|Alu	-5730	NR_024495	642826	Hs.463017	NR_024495		BMS1P6	BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2	BMS1 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_50286	chr19	54743715	54744074	+	9.74082	NA	intron (NR_104098, intron 6 of 9)	intron (NR_104098, intron 6 of 9)	2716	NM_024318	79168	Hs.688335	NM_024318		LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding
19-PTNLD28-TUMOR_peak_13700	chr10	57389627	57389757	+	9.74082	NA	Intergenic	Intergenic	30942	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
19-PTNLD28-TUMOR_peak_98991	chr8	64081425	64081600	+	9.74082	NA	promoter-TSS (NR_102684)	promoter-TSS (NR_102684)	-50	NM_001277814	253943	Hs.491861	NM_152758	HPRD:08106	YTHDF3	-	YTH domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_50194	chr19	53698676	53698766	+	9.74082	NA	Intergenic	Intergenic	-2102	NM_024733	79788	Hs.745230	NM_024733	HPRD:07856	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
19-PTNLD28-TUMOR_peak_43619	chr17	75082694	75082883	+	9.74082	NA	Intergenic	Intergenic	-1937	NM_001204408	6397	Hs.464184	NM_003003	HPRD:03295	SEC14L1	PRELID4A|SEC14L	SEC14-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_76758	chr4	119534400	119534509	+	9.74082	NA	intron (NR_109983, intron 5 of 9)	L2a|LINE|L2	-16630	NR_103825	729218	Hs.448518	NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
19-PTNLD28-TUMOR_peak_13378	chr10	47083407	47083537	+	9.73880	NA	promoter-TSS (NM_005972)	promoter-TSS (NM_005972)	-62	NM_005972	5540	Hs.524719	NM_005972	HPRD:03476	NPY4R	NPY4-R|PP1|PPYR1|Y4	neuropeptide Y receptor Y4	protein-coding
19-PTNLD28-TUMOR_peak_82604	chr5	139599375	139599520	+	9.73880	NA	intron (NM_032412, intron 2 of 2)	intron (NM_032412, intron 2 of 2)	44794	NM_032412	84418	Hs.529798	NM_032412		CYSTM1	C5orf32	cysteine-rich transmembrane module containing 1	protein-coding
19-PTNLD28-TUMOR_peak_88708	chr6	89940708	89940968	+	9.73792	NA	intron (NM_001267582, intron 1 of 11)	L1PA2|LINE|L1	169	NM_001267582	2569	Hs.99927	NM_002042	HPRD:15921	GABRR1	-	gamma-aminobutyric acid (GABA) A receptor, rho 1	protein-coding
19-PTNLD28-TUMOR_peak_1823	chr1	28278743	28278913	+	9.73792	NA	intron (NM_014474, intron 3 of 7)	intron (NM_014474, intron 3 of 7)	-7676	NM_018053	55113	Hs.55024	NM_018053	HPRD:07661	XKR8	XRG8|hXkr8	XK, Kell blood group complex subunit-related family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_109092	chrX	106809638	106809755	+	9.73792	NA	intron (NM_032428, intron 13 of 15)	intron (NM_032428, intron 13 of 15)	-20645	NR_046750	100874122	Hs.600967	NR_046750		FRMPD3-AS1	-	FRMPD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70328	chr3	124426488	124426809	+	9.73792	NA	intron (NM_001024660, intron 57 of 59)	L1MEf|LINE|L1	-22565	NM_000373	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_87748	chr6	45607922	45608134	+	9.73792	NA	Intergenic	Intergenic	217714	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_40102	chr17	8325077	8325236	+	9.73792	NA	Intergenic	Intergenic	-14014	NM_001025579	81565	Hs.372123	NM_030808	HPRD:06340	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_101174	chr8	134898411	134898571	+	9.73792	NA	promoter-TSS (NR_125424)	promoter-TSS (NR_125424)	-248	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_100857	chr8	129089108	129089233	+	9.73792	NA	intron (NR_003367, intron 5 of 7)	intron (NR_003367, intron 5 of 7)	27772	NR_031612	100302175		NR_031612	miRBase:MI0006340	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_85791	chr6	19669485	19669952	+	9.73792	NA	Intergenic	Intergenic	-167883	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_33869	chr15	62682385	62682814	+	9.73792	NA	Intergenic	CpG	47371	NR_106733	102464834		NR_106733		MIR6085	hsa-mir-6085	microRNA 6085	ncRNA
19-PTNLD28-TUMOR_peak_48262	chr19	22785502	22785680	+	9.73792	NA	non-coding (NR_033899, exon 9 of 10)	non-coding (NR_033899, exon 9 of 10)	-5227	NR_103470	100996349	Hs.446176	NR_103470		LOC100996349	-	testis expressed 264 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_68348	chr3	52471921	52472082	+	9.73792	NA	exon (NM_020163, exon 14 of 16)	exon (NM_020163, exon 14 of 16)	7042	NM_020163	56920	Hs.59729	NM_020163	HPRD:14251	SEMA3G	sem2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding
19-PTNLD28-TUMOR_peak_40950	chr17	30132594	30132744	+	9.73792	NA	Intergenic	Intergenic	53657	NM_018405	55352	Hs.462729	NM_018405	HPRD:13675	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5, differentiation stimulator	protein-coding
19-PTNLD28-TUMOR_peak_25996	chr12	106143004	106143194	+	9.73792	NA	Intergenic	Intergenic	42547	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_64865	chr22	26760506	26760680	+	9.73792	NA	intron (NM_001184777, intron 12 of 14)	intron (NM_001184777, intron 12 of 14)	-64687	NM_020437	57168	Hs.567547	NM_020437	HPRD:14255	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_21363	chr11	116146519	116146617	+	9.73792	NA	Intergenic	Intergenic	497146	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_42457	chr17	55050960	55051055	+	9.73792	NA	Intergenic	LTR8|LTR|ERV1	-4461	NM_021626	59342	Hs.514950	NM_021626	HPRD:10194	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_77714	chr4	154680969	154681319	+	9.73792	NA	5' UTR (NM_173662, exon 1 of 9)	5' UTR (NM_173662, exon 1 of 9)	243	NM_173662	285533	Hs.388364	NM_173662	HPRD:15262	RNF175	-	ring finger protein 175	protein-coding
19-PTNLD28-TUMOR_peak_38013	chr16	57079805	57079920	+	9.73792	NA	intron (NM_032206, intron 20 of 47)	intron (NM_032206, intron 20 of 47)	28876	NM_032206	84166	Hs.528836	NM_032206	HPRD:14831	NLRC5	CLR16.1|NOD27|NOD4	NLR family, CARD domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_61951	chr20	50527469	50527624	+	9.73792	NA	Intergenic	Intergenic	-48094	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
19-PTNLD28-TUMOR_peak_10201	chr1	221916139	221916502	+	9.73744	NA	promoter-TSS (NM_007207)	promoter-TSS (NM_007207)	-802	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_47563	chr19	13954441	13954670	+	9.73549	NA	Intergenic	Intergenic	-7082	NR_029495	407010		NR_029495	miRBase:MI0000079	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A	microRNA 23a	ncRNA
19-PTNLD28-TUMOR_peak_37268	chr16	30760073	30760220	+	9.73498	NA	exon (NM_001172432, exon 2 of 11)	exon (NM_001172432, exon 2 of 11)	526	NM_000294	5261	Hs.65735	NM_000294	HPRD:01405	PHKG2	GSD9C	phosphorylase kinase, gamma 2 (testis)	protein-coding
19-PTNLD28-TUMOR_peak_9229	chr1	201463289	201463404	+	9.72527	NA	intron (NM_001193570, intron 2 of 5)	intron (NM_001193570, intron 2 of 5)	2355	NM_001193572	1465	Hs.108080	NM_004078	HPRD:00470	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141	cysteine and glycine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_18480	chr11	47573715	47573879	+	9.72062	NA	intron (NM_006560, intron 1 of 13)	intron (NM_006560, intron 1 of 13)	995	NM_006560	10658	Hs.595333	NM_006560	HPRD:03046	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP, Elav-like family member 1	protein-coding
19-PTNLD28-TUMOR_peak_93446	chr7	75623369	75623567	+	9.72062	NA	intron (NM_031925, intron 1 of 11)	CpG	524	NM_031925	83862	Hs.488835	NM_031925		TMEM120A	NET29|TMPIT	transmembrane protein 120A	protein-coding
19-PTNLD28-TUMOR_peak_19344	chr11	65760628	65760799	+	9.72062	NA	Intergenic	Intergenic	-8837	NM_003860	8815	Hs.433759	NM_003860	HPRD:04817	BANF1	BAF|BCRP1|D14S1460|NGPS	barrier to autointegration factor 1	protein-coding
19-PTNLD28-TUMOR_peak_47915	chr19	17559474	17559688	+	9.72062	NA	promoter-TSS (NM_001190844)	promoter-TSS (NM_001190844)	-205	NM_001190844	100130519	Hs.436603	NM_001190844	ENSG00000188051	TMEM221	-	transmembrane protein 221	protein-coding
19-PTNLD28-TUMOR_peak_106245	chr9	130907998	130908218	+	9.72062	NA	Intergenic	Intergenic	-3624	NM_005564	3934	Hs.204238	NM_005564	HPRD:02551	LCN2	24p3|MSFI|NGAL	lipocalin 2	protein-coding
19-PTNLD28-TUMOR_peak_32730	chr15	28908956	28909168	+	9.71802	NA	intron (NR_036443, intron 6 of 13)	intron (NR_036443, intron 6 of 13)	9474	NR_036443	440248	Hs.531509	NM_199045	HPRD:18634	HERC2P9	-	hect domain and RLD 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_4034	chr1	63988611	63988727	+	9.71802	NA	promoter-TSS (NM_032437)	promoter-TSS (NM_032437)	275	NM_001206739	23421	Hs.166539	NM_014288	HPRD:09267	ITGB3BP	CENP-R|CENPR|HSU37139|NRIF3|TAP20	integrin beta 3 binding protein (beta3-endonexin)	protein-coding
19-PTNLD28-TUMOR_peak_95577	chr7	135443372	135443618	+	9.71802	NA	Intergenic	Intergenic	-9901	NM_205855	389558	Hs.55200	NM_205855	HPRD:15613	FAM180A	UNQ1940	family with sequence similarity 180, member A	protein-coding
19-PTNLD28-TUMOR_peak_14532	chr10	80720226	80720349	+	9.71785	NA	intron (NR_015429, intron 6 of 7)	MIR|SINE|MIR	106918	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24345	chr12	52680885	52680993	+	9.71785	NA	exon (NM_002281, exon 7 of 9)	exon (NM_002281, exon 7 of 9)	4360	NM_002281	3887	Hs.658118	NM_002281	HPRD:03691	KRT81	HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
19-PTNLD28-TUMOR_peak_52364	chr2	43056130	43056279	+	9.71785	NA	Intergenic	Intergenic	-36453	NM_012205	23498	Hs.368805	NM_012205	HPRD:05158	HAAO	3-HAO|HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
19-PTNLD28-TUMOR_peak_83484	chr5	157002352	157002898	+	9.71785	NA	exon (NM_033274, exon 1 of 23)	exon (NM_033274, exon 1 of 23)	206	NM_033274	8728	Hs.483944	NM_023038	HPRD:04704	ADAM19	MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
19-PTNLD28-TUMOR_peak_28414	chr13	67234404	67234593	+	9.71785	NA	intron (NM_020403, intron 2 of 3)	intron (NM_020403, intron 2 of 3)	-164803	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_44595	chr18	11689034	11689527	+	9.71785	NA	5' UTR (NM_182978, exon 1 of 12)	5' UTR (NM_182978, exon 1 of 12)	266	NM_182978	2774	Hs.136295	NM_002071	HPRD:00758	GNAL	DYT25	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	protein-coding
19-PTNLD28-TUMOR_peak_60724	chr20	34130020	34130203	+	9.71785	NA	exon (NM_015966, exon 2 of 13)	exon (NM_015966, exon 2 of 13)	333	NM_015966	51614	Hs.472558	NM_015966	HPRD:15306	ERGIC3	C20orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
19-PTNLD28-TUMOR_peak_82369	chr5	135964848	135965235	+	9.71785	NA	Intergenic	Intergenic	-263877	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_45591	chr18	45720024	45720179	+	9.71785	NA	Intergenic	Intergenic	-56421	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_58710	chr2	228337567	228337775	+	9.71785	NA	TTS (NR_049888)	TTS (NR_049888)	783	NM_001135189	3267	Hs.352962	NM_004504	HPRD:02918	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_34643	chr15	77789300	77789427	+	9.71785	NA	Intergenic	Intergenic	76120	NM_018200	10363	Hs.69594	NM_018200	HPRD:16116	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
19-PTNLD28-TUMOR_peak_43556	chr17	74462040	74462290	+	9.71785	NA	5' UTR (NM_001166579, exon 4 of 7)	5' UTR (NM_001166579, exon 4 of 7)	-1465	NM_001088	15	Hs.431417	NM_001088	HPRD:02974	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_8186	chr1	171936095	171936287	+	9.71740	NA	intron (NM_001136127, intron 2 of 19)	LTR51|LTR|ERV1	125573	NM_001136127	26052	Hs.654775	NM_015569	HPRD:13241	DNM3	Dyna III	dynamin 3	protein-coding
19-PTNLD28-TUMOR_peak_39578	chr17	824469	824598	+	9.71740	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	-57182	NM_001205319	64359	Hs.527989	NM_022463	HPRD:14858	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
19-PTNLD28-TUMOR_peak_91157	chr7	6329988	6330261	+	9.71740	NA	Intergenic	Intergenic	-17882	NM_004227	9265	Hs.487479	NM_004227	HPRD:05469	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
19-PTNLD28-TUMOR_peak_104390	chr9	90812718	90812874	+	9.71740	NA	Intergenic	L1MC5|LINE|L1	-62896	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	SPATA31 subfamily C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_89625	chr6	137736591	137736737	+	9.71740	NA	Intergenic	Intergenic	78867	NM_175747	167826	Hs.195398	NM_175747	HPRD:17662	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_28142	chr13	46870007	46870211	+	9.71740	NA	TTS (NR_047493)	TTS (NR_047493)	1870	NR_047493	100861554	Hs.90866	NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
19-PTNLD28-TUMOR_peak_107965	chrX	39590083	39590357	+	9.71740	NA	Intergenic	Intergenic	-339192	NR_110385	101927449	Hs.553988	NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
19-PTNLD28-TUMOR_peak_61195	chr20	42372913	42373126	+	9.71740	NA	Intergenic	Intergenic	-17377	NM_176791	149699	Hs.447626	NM_176791	HPRD:12778	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_28050	chr13	44627181	44627361	+	9.71740	NA	Intergenic	Intergenic	30800	NR_026955	121838	Hs.201441	NR_026955		LINC00284	NCRNA00284	long intergenic non-protein coding RNA 284	ncRNA
19-PTNLD28-TUMOR_peak_77851	chr4	159780108	159780230	+	9.71740	NA	intron (NM_020840, intron 8 of 16)	intron (NM_020840, intron 8 of 16)	89987	NM_020840	57600	Hs.652441	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_88025	chr6	53446059	53446176	+	9.71740	NA	Intergenic	Intergenic	-8044	NR_110840	101927136	Hs.509788	NR_110840	ENSG00000231683	LOC101927136	-	uncharacterized LOC101927136	ncRNA
19-PTNLD28-TUMOR_peak_53132	chr2	65414461	65414665	+	9.71740	NA	Intergenic	Intergenic	-40266	NM_005722	10097	Hs.643727	NM_005722	HPRD:05023	ACTR2	ARP2	ARP2 actin-related protein 2 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_95689	chr7	138013131	138013268	+	9.71740	NA	Intergenic	LTR23|LTR|ERV1	-131880	NM_003852	8805	Hs.490287	NM_003852	HPRD:04556	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
19-PTNLD28-TUMOR_peak_9036	chr1	196659846	196660000	+	9.71740	NA	intron (NM_000186, intron 9 of 21)	LTR9|LTR|ERV1	38915	NM_001014975	3075	Hs.363396	NM_000186	HPRD:00601	CFH	AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS	complement factor H	protein-coding
19-PTNLD28-TUMOR_peak_58918	chr2	234352273	234352394	+	9.71740	NA	intron (NM_152879, intron 10 of 29)	intron (NM_152879, intron 10 of 29)	55533	NM_003648	8527	Hs.471675	NM_003648	HPRD:03492	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
19-PTNLD28-TUMOR_peak_61966	chr20	50884908	50885013	+	9.71740	NA	Intergenic	Intergenic	-76436	NM_199427	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_21850	chr11	124587869	124588285	+	9.71740	NA	Intergenic	Intergenic	-21752	NM_001126181	4900	Hs.524116	NM_006176	HPRD:03828	NRGN	RC3|hng	neurogranin (protein kinase C substrate, RC3)	protein-coding
19-PTNLD28-TUMOR_peak_110092	chrY	1876352	1876544	+	9.71740	NA	Intergenic	AluY|SINE|Alu	192422	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_107356	chrX	1926352	1926544	+	9.71740	NA	Intergenic	AluY|SINE|Alu	192422	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_52357	chr2	42890327	42890523	+	9.71740	NA	intron (NM_001282755, intron 9 of 17)	intron (NM_001282755, intron 9 of 17)	94768	NM_020744	57504	Hs.435413	NM_020744	HPRD:12359	MTA3	-	metastasis associated 1 family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_60107	chr20	20218127	20218255	+	9.71740	NA	intron (NM_015585, intron 18 of 26)	intron (NM_015585, intron 18 of 26)	-130574	NM_002196	3642	Hs.89584	NM_002196	HPRD:02480	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
19-PTNLD28-TUMOR_peak_96921	chr8	6321538	6321668	+	9.71740	NA	intron (NM_024596, intron 9 of 13)	intron (NM_024596, intron 9 of 13)	57490	NM_024596	79648	Hs.656769	NM_024596	HPRD:06174	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
19-PTNLD28-TUMOR_peak_73447	chr3	194860663	194860833	+	9.71740	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	-7852	NR_102710	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_44970	chr18	22296190	22296534	+	9.71740	NA	Intergenic	L1PA2|LINE|L1	88216	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LOC729950	-	uncharacterized LOC729950	ncRNA
19-PTNLD28-TUMOR_peak_92989	chr7	67378699	67378840	+	9.71740	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-106471	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_93605	chr7	78864561	78864682	+	9.71740	NA	intron (NM_001301128, intron 1 of 20)	L1PA2|LINE|L1	-217652	NR_038346	100505881	Hs.31474	NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_108955	chrX	99665201	99665370	+	9.71740	NA	promoter-TSS (NM_020766)	promoter-TSS (NM_020766)	-14	NM_001105243	57526	Hs.4993	NM_020766	HPRD:11843	PCDH19	EFMR|EIEE9	protocadherin 19	protein-coding
19-PTNLD28-TUMOR_peak_10431	chr1	225802782	225802893	+	9.71740	NA	intron (NM_001008493, intron 1 of 14)	SVA_B|Other|Other	38008	NM_001008493	55740	Hs.497893	NM_018212	HPRD:12360	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34527	chr15	75287707	75287950	+	9.71740	NA	promoter-TSS (NR_033660)	promoter-TSS (NR_033660)	-48	NM_001178111	192683	Hs.374180	NM_138967	HPRD:18020	SCAMP5	-	secretory carrier membrane protein 5	protein-coding
19-PTNLD28-TUMOR_peak_31958	chr14	98558858	98559095	+	9.71740	NA	Intergenic	Intergenic	-114515	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	ncRNA
19-PTNLD28-TUMOR_peak_77645	chr4	153618175	153618356	+	9.71740	NA	Intergenic	Plat_L3|LINE|CR1	-16948	NM_152680	201799	Hs.518900	NM_152680		TMEM154	-	transmembrane protein 154	protein-coding
19-PTNLD28-TUMOR_peak_108479	chrX	57656334	57656439	+	9.71740	NA	Intergenic	L1PA2|LINE|L1	38117	NM_007157	158586	Hs.156257	NM_007157	HPRD:11777	ZXDB	ZNF905|dJ83L6.1	zinc finger, X-linked, duplicated B	protein-coding
19-PTNLD28-TUMOR_peak_44231	chr18	944573	944729	+	9.71740	NA	Intergenic	Intergenic	39454	NM_001117	116	Hs.531719	NM_001117	HPRD:02369	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1 (pituitary)	protein-coding
19-PTNLD28-TUMOR_peak_63038	chr21	29680892	29681058	+	9.71740	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-230665	NR_026553	118421	Hs.438549	NR_026552	HPRD:10733	LINC00161	C21orf100|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
19-PTNLD28-TUMOR_peak_22140	chr11	129912051	129912216	+	9.71740	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-27583	NM_001642	334	Hs.370247	NM_001642	HPRD:00103	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding
19-PTNLD28-TUMOR_peak_93775	chr7	86274116	86274239	+	9.71740	NA	5' UTR (NM_000840, exon 1 of 6)	5' UTR (NM_000840, exon 1 of 6)	947	NM_000840	2913	Hs.590575	NM_000840	HPRD:03070	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate receptor, metabotropic 3	protein-coding
19-PTNLD28-TUMOR_peak_36356	chr16	12424828	12425075	+	9.71740	NA	intron (NM_032167, intron 15 of 20)	intron (NM_032167, intron 15 of 20)	354349	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_15553	chr10	110357835	110358009	+	9.71740	NA	Intergenic	Intergenic	-528871	NR_125760	103695365	Hs.648991	NR_125760		LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
19-PTNLD28-TUMOR_peak_7712	chr1	161576132	161576493	+	9.71358	NA	non-coding (NR_024151, exon 1 of 1)	non-coding (NR_024151, exon 1 of 1)	463	NR_024151	3311	Hs.662180	NR_024151		HSPA7	HSP70B	heat shock 70kDa protein 7 (HSP70B)	pseudo
19-PTNLD28-TUMOR_peak_24928	chr12	63120471	63120608	+	9.71277	NA	intron (NM_020700, intron 5 of 9)	intron (NM_020700, intron 5 of 9)	123073	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_64678	chr22	23624112	23624326	+	9.71277	NA	intron (NM_004327, intron 8 of 22)	intron (NM_004327, intron 8 of 22)	19265	NR_033408	26226	Hs.729589	NR_033408		FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_63932	chr21	45626582	45626818	+	9.71269	NA	Intergenic	Intergenic	34187	NM_001283050	23308	Hs.14155	NM_015259	HPRD:05757	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell co-stimulator ligand	protein-coding
19-PTNLD28-TUMOR_peak_13677	chr10	54784931	54785100	+	9.71269	NA	Intergenic	LTR30|LTR|ERV1	-253555	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_4732	chr1	89150550	89150724	+	9.71269	NA	intron (NM_006256, intron 1 of 21)	CpG	250	NR_110682	101927891	Hs.637231	NR_110682	ENSG00000237505	PKN2-AS1	-	PKN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70699	chr3	129059451	129059633	+	9.70861	NA	Intergenic	SVA_D|Other|Other	-24422	NM_006026	8971	Hs.75307	NM_006026	HPRD:04151	H1FX	H1X	H1 histone family, member X	protein-coding
19-PTNLD28-TUMOR_peak_31040	chr14	69951269	69951421	+	9.70861	NA	promoter-TSS (NM_001161498)	promoter-TSS (NM_001161498)	-126	NM_001161498	400224	Hs.509796	NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding
19-PTNLD28-TUMOR_peak_3439	chr1	50799269	50799475	+	9.70774	NA	Intergenic	CpG	89747	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
19-PTNLD28-TUMOR_peak_55617	chr2	129365650	129366079	+	9.70774	NA	Intergenic	Intergenic	-256310	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_97012	chr8	8035070	8035202	+	9.70774	NA	Intergenic	HERVE-int|LTR|ERV1	-50956	NR_024361	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_51228	chr2	12938028	12938287	+	9.70774	NA	Intergenic	Intergenic	60664	NR_036072	100422986		NR_036072		MIR3125	-	microRNA 3125	ncRNA
19-PTNLD28-TUMOR_peak_109429	chrX	129194241	129194391	+	9.70774	NA	Intergenic	CpG	50159	NM_001421	2000	Hs.271940	NM_001421	HPRD:06499	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_53775	chr2	85521790	85521918	+	9.70774	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	33565	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_76699	chr4	114900543	114901081	+	9.70774	NA	promoter-TSS (NM_024590)	promoter-TSS (NM_024590)	66	NM_024590	79642	Hs.22895	NM_024590	HPRD:08034	ARSJ	-	arylsulfatase family, member J	protein-coding
19-PTNLD28-TUMOR_peak_100649	chr8	126140861	126141111	+	9.70774	NA	intron (NM_173685, intron 3 of 7)	MLT1D|LTR|ERVL-MaLR	36903	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_104084	chr9	83740398	83740652	+	9.70774	NA	Intergenic	MER34B-int|LTR|ERV1	563071	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_70862	chr3	131974299	131974529	+	9.70774	NA	Intergenic	Intergenic	-61797	NM_001099	55	Hs.433060	NM_001099	HPRD:01378	ACPP	5'-NT|ACP-3|ACP3	acid phosphatase, prostate	protein-coding
19-PTNLD28-TUMOR_peak_106386	chr9	132499931	132500107	+	9.70774	NA	TTS (NM_004878)	TTS (NM_004878)	15325	NM_004878	9536	Hs.146688	NM_004878	HPRD:05528	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
19-PTNLD28-TUMOR_peak_37093	chr16	29106512	29106654	+	9.70774	NA	intron (NR_003369, intron 10 of 16)	intron (NR_003369, intron 10 of 16)	20420	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_54024	chr2	89131334	89131491	+	9.70774	NA	Intergenic	Intergenic	19528	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_9405	chr1	203185459	203185587	+	9.70774	NA	non-coding (NR_045784, exon 13 of 13)	non-coding (NR_045784, exon 13 of 13)	13337	NM_001270509	1118	Hs.201688	NM_003465	HPRD:02494	CHIT1	CHI3|CHIT|CHITD	chitinase 1 (chitotriosidase)	protein-coding
19-PTNLD28-TUMOR_peak_104817	chr9	99366325	99366453	+	9.70774	NA	intron (NM_003671, intron 1 of 12)	intron (NM_003671, intron 1 of 12)	15723	NM_003671	8555	Hs.40582	NM_003671	HPRD:04615	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
19-PTNLD28-TUMOR_peak_17382	chr11	14930187	14930320	+	9.70774	NA	Intergenic	Intergenic	-16502	NM_024514	120227	Hs.371427	NM_024514	HPRD:10569	CYP2R1	-	cytochrome P450, family 2, subfamily R, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_82339	chr5	135342491	135342647	+	9.70774	NA	Intergenic	Intergenic	-22015	NM_000358	7045	Hs.369397	NM_000358	HPRD:03409	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor, beta-induced, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_21391	chr11	116643396	116643852	+	9.70774	NA	promoter-TSS (NM_001159736)	promoter-TSS (NM_001159736)	90	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_106004	chr9	126139708	126139836	+	9.70692	NA	non-coding (NR_104603, exon 8 of 9)	non-coding (NR_104603, exon 8 of 9)	8714	NR_104603	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_49603	chr19	47930590	47930744	+	9.70692	NA	TTS (NM_015063)	TTS (NM_015063)	-7882	NM_020160	56917	Hs.380923	NM_020160	HPRD:14386	MEIS3	MRG2	Meis homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_22742	chr12	6449516	6449632	+	9.69820	NA	intron (NM_001065, intron 1 of 9)	MIR|SINE|MIR	1709	NM_001065	7132	Hs.279594	NM_001065	HPRD:01861	TNFRSF1A	CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60	tumor necrosis factor receptor superfamily, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_5282	chr1	108074171	108074270	+	9.69542	NA	Intergenic	Intergenic	156906	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_47019	chr19	8054171	8054467	+	9.69542	NA	intron (NM_001419, intron 2 of 5)	intron (NM_001419, intron 2 of 5)	16210	NM_001419	1994	Hs.184492	NM_001419	HPRD:16025	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100991	chr8	131550855	131550997	+	9.69542	NA	Intergenic	L2|LINE|L2	-95020	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_43668	chr17	75523513	75523795	+	9.69542	NA	Intergenic	Intergenic	-19369	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
19-PTNLD28-TUMOR_peak_25532	chr12	89747396	89747538	+	9.69007	NA	promoter-TSS (NM_001946)	promoter-TSS (NM_001946)	-831	NM_022652	1848	Hs.298654	NM_001946	HPRD:04124	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
19-PTNLD28-TUMOR_peak_99029	chr8	67032206	67032383	+	9.69007	NA	Intergenic	MIRc|SINE|MIR	-6984	NM_184087	84675	Hs.85524	NM_033058	HPRD:05927	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
19-PTNLD28-TUMOR_peak_59858	chr20	12989776	12989969	+	9.68847	NA	5' UTR (NM_018327, exon 1 of 12)	5' UTR (NM_018327, exon 1 of 12)	245	NM_018327	55304	Hs.425023	NM_018327	HPRD:12765	SPTLC3	C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b	serine palmitoyltransferase, long chain base subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_43447	chr17	73597472	73597743	+	9.68847	NA	non-coding (NR_003587, exon 13 of 61)	non-coding (NR_003587, exon 13 of 61)	13468	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64294	chr22	18760850	18760961	+	9.68847	NA	TTS (NR_003267)	TTS (NR_003267)	18569	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_32470	chr15	20784936	20785226	+	9.68847	NA	Intergenic	AluJb|SINE|Alu	17407	NR_027411	729786	Hs.592025	NR_027411		GOLGA8CP	GOLGA8C	golgin A8 family, member C, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_84097	chr5	173262718	173262931	+	9.68847	NA	Intergenic	L2|LINE|L2	-44879	NR_108028	101928154	Hs.366725	NR_108028		LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
19-PTNLD28-TUMOR_peak_101329	chr8	139698861	139698986	+	9.68762	NA	intron (NM_152888, intron 37 of 64)	intron (NM_152888, intron 37 of 64)	-189858	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_34387	chr15	72612090	72612288	+	9.68762	NA	promoter-TSS (NM_001172684)	promoter-TSS (NM_001172684)	98	NM_001172684	60677	Hs.348342	NM_052840	HPRD:10691	CELF6	BRUNOL6	CUGBP, Elav-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_79204	chr5	20678934	20679138	+	9.68762	NA	Intergenic	Intergenic	-103054	NM_001291956	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_87614	chr6	43677118	43677322	+	9.68762	NA	Intergenic	L2|LINE|L2	-21671	NM_018135	55168	Hs.520149	NM_018135	HPRD:14780	MRPS18A	HumanS18b|MRP-S18-3|MRPS18-3|S18bmt	mitochondrial ribosomal protein S18A	protein-coding
19-PTNLD28-TUMOR_peak_94772	chr7	107147117	107147247	+	9.68762	NA	intron (NM_181733, intron 6 of 20)	L1PB3|LINE|L1	36680	NM_005295	2845	Hs.657277	NM_005295	HPRD:03552	GPR22	-	G protein-coupled receptor 22	protein-coding
19-PTNLD28-TUMOR_peak_51812	chr2	28519843	28520087	+	9.68762	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	13361	NR_038319	100505716	Hs.679092	NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
19-PTNLD28-TUMOR_peak_9132	chr1	200479395	200479494	+	9.68762	NA	Intergenic	Intergenic	-100258	NM_012482	23528	Hs.59757	NM_012482	HPRD:11702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
19-PTNLD28-TUMOR_peak_26839	chr12	122840816	122841027	+	9.68762	NA	intron (NM_198240, intron 5 of 23)	MER119|DNA|hAT-Charlie	-39168	NR_045382	100507066	Hs.624253	NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86137	chr6	26330490	26330616	+	9.68762	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	-34834	NM_001197249	11118	Hs.376046	NM_007047	HPRD:12547	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin, subfamily 3, member A2	protein-coding
19-PTNLD28-TUMOR_peak_99131	chr8	70560958	70561148	+	9.68762	NA	intron (NM_015170, intron 22 of 22)	intron (NM_015170, intron 22 of 22)	156025	NM_001128205	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_50773	chr2	1156390	1156610	+	9.68762	NA	intron (NM_018968, intron 6 of 16)	MLT1A|LTR|ERVL-MaLR	209946	NM_018968	54221	Hs.595069	NM_018968	HPRD:16374	SNTG2	G2SYN|SYN5	syntrophin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_93291	chr7	73853995	73854112	+	9.68762	NA	Intergenic	Intergenic	-14067	NM_005685	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_60287	chr20	25047159	25047251	+	9.68762	NA	Intergenic	Intergenic	-8387	NM_001252677	84532	Hs.529353	NM_032501	HPRD:12413	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
19-PTNLD28-TUMOR_peak_87782	chr6	45999920	46000127	+	9.68762	NA	intron (NM_001114086, intron 1 of 5)	MSTA|LTR|ERVL-MaLR	-16397	NM_016929	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_23062	chr12	11974979	11975341	+	9.68762	NA	intron (NR_046487, intron 1 of 3)	intron (NR_046487, intron 1 of 3)	103947	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_66544	chr3	10536795	10536920	+	9.68762	NA	intron (NM_001001331, intron 1 of 22)	intron (NM_001001331, intron 1 of 22)	10411	NM_001001331	491	Hs.268942	NM_001683	HPRD:00160	ATP2B2	PMCA2|PMCA2a|PMCA2i	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
19-PTNLD28-TUMOR_peak_62519	chr20	61306798	61307090	+	9.68762	NA	Intergenic	Intergenic	-8971	NR_024470	100127888	Hs.671273	NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11705	chr10	3437836	3437996	+	9.68762	NA	Intergenic	Intergenic	-222883	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_1574	chr1	25045493	25045599	+	9.68762	NA	Intergenic	AluJr|SINE|Alu	-26214	NM_013943	25932	Hs.440544	NM_013943	HPRD:05943	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
19-PTNLD28-TUMOR_peak_104403	chr9	91011910	91012008	+	9.68762	NA	intron (NM_006717, intron 1 of 5)	Tigger3|DNA|TcMar-Tigger	8662	NM_006717	10927	Hs.146804	NM_006717	HPRD:18096	SPIN1	SPIN	spindlin 1	protein-coding
19-PTNLD28-TUMOR_peak_5447	chr1	110577826	110578178	+	9.68622	NA	intron (NR_073071, intron 1 of 21)	intron (NR_073071, intron 1 of 21)	779	NR_073071	85369	Hs.584996	NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_56618	chr2	161232479	161232581	+	9.68622	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	31863	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	ncRNA
19-PTNLD28-TUMOR_peak_79361	chr5	32710179	32710315	+	9.68622	NA	promoter-TSS (NM_001204376)	promoter-TSS (NM_001204376)	-496	NM_001204376	4883	Hs.13528	NM_000908	HPRD:00167	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_7019	chr1	153769827	153769930	+	9.68289	NA	Intergenic	CR1_Mam|LINE|CR1	22110	NM_024330	11000	Hs.438723	NM_024330	HPRD:11967	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_8498	chr1	178908171	178908376	+	9.68289	NA	Intergenic	Intergenic	-68058	NM_004673	9068	Hs.591474	NM_004673	HPRD:04851	ANGPTL1	ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2	angiopoietin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_105326	chr9	112259903	112260022	+	9.68289	NA	intron (NM_002829, intron 1 of 25)	intron (NM_002829, intron 1 of 25)	631	NM_002829	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_50781	chr2	1459391	1459570	+	9.68289	NA	intron (NM_175722, intron 5 of 14)	MLT1D-int|LTR|ERVL-MaLR	41300	NM_175721	7173	Hs.467554	NM_000547	HPRD:06000	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_93631	chr7	79976482	79976800	+	9.68289	NA	Intergenic	Intergenic	27114	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
19-PTNLD28-TUMOR_peak_87687	chr6	44243592	44243970	+	9.68289	NA	exon (NM_001137560, exon 3 of 3)	exon (NM_001137560, exon 3 of 3)	5301	NM_001137560	441151	Hs.632851	NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
19-PTNLD28-TUMOR_peak_88892	chr6	100745177	100745401	+	9.68289	NA	Intergenic	Intergenic	166262	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_326	chr1	5727600	5727727	+	9.68289	NA	Intergenic	Intergenic	103532	NR_039612	100616489		NR_039612	miRBase:MI0016753	MIR4417	-	microRNA 4417	ncRNA
19-PTNLD28-TUMOR_peak_53736	chr2	85109317	85109508	+	9.67865	NA	Intergenic	Intergenic	-1043	NM_001277053	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_86034	chr6	25193917	25194026	+	9.67865	NA	Intergenic	Intergenic	-55351	NR_027626	8418	Hs.484918	NR_002174		CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_17692	chr11	26593712	26594125	+	9.67865	NA	promoter-TSS (NM_001135092)	promoter-TSS (NM_001135092)	-103	NM_001135091	143662	Hs.407152	NM_145650	HPRD:16349	MUC15	MUC-15|PAS3|PASIII	mucin 15, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_32303	chr14	105293960	105294185	+	9.67865	NA	Intergenic	Intergenic	6534	NR_024396	196872	Hs.352220	NR_024396	ENSG00000258701	LINC00638	-	long intergenic non-protein coding RNA 638	ncRNA
19-PTNLD28-TUMOR_peak_64413	chr22	20144652	20144769	+	9.67865	NA	Intergenic	Intergenic	-7279	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
19-PTNLD28-TUMOR_peak_11517	chr1	247289983	247290190	+	9.67865	NA	intron (NM_001243740, intron 3 of 3)	CpG	-14367	NM_207401	388759	Hs.456511	NM_207401	HPRD:13511	C1orf229	-	chromosome 1 open reading frame 229	protein-coding
19-PTNLD28-TUMOR_peak_109946	chrX	153421157	153421454	+	9.67637	NA	intron (NM_020061, intron 4 of 5)	intron (NM_020061, intron 4 of 5)	11607	NM_020061	5956	Hs.247787	NM_020061	HPRD:02366	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1 (cone pigments), long-wave-sensitive	protein-coding
19-PTNLD28-TUMOR_peak_13818	chr10	62703363	62703537	+	9.67637	NA	intron (NR_024554, intron 2 of 11)	CpG	583	NM_001242359	9886	Hs.737374	NM_014836	HPRD:06299	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_24554	chr12	54698094	54698223	+	9.67637	NA	Intergenic	Intergenic	-3337	NM_001261461	4778	Hs.75643	NM_006163	HPRD:09030	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
19-PTNLD28-TUMOR_peak_35235	chr15	91427523	91427739	+	9.67637	NA	promoter-TSS (NM_001143783)	promoter-TSS (NM_001143783)	-34	NM_001143785	2242	Hs.7636	NM_002005	HPRD:01814	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_36036	chr16	4744109	4744283	+	9.67605	NA	exon (NM_032349, exon 2 of 3)	exon (NM_032349, exon 2 of 3)	502	NM_001193452	84309	Hs.513315	NM_032349	HPRD:15309	NUDT16L1	SDOS	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding
19-PTNLD28-TUMOR_peak_19869	chr11	72125272	72125448	+	9.67605	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	20364	NM_001258393	81570	Hs.523877	NM_030813	HPRD:11560	CLPB	HSP78|SKD3	ClpB caseinolytic peptidase B homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_86821	chr6	33280445	33280695	+	9.67592	NA	intron (NM_172209, intron 2 of 6).4	intron (NM_172209, intron 2 of 6).4	1594	NM_172209	6892	Hs.370937	NM_003190	HPRD:09061	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein (tapasin)	protein-coding
19-PTNLD28-TUMOR_peak_103759	chr9	73034933	73035047	+	9.67543	NA	Intergenic	CpG	-5417	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_35912	chr16	3202807	3203047	+	9.67204	NA	Intergenic	tRNA-Arg-AGG|tRNA|tRNA	17793	NM_001134655	7760	Hs.115284	NM_004220	HPRD:12224	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_64065	chr21	46974888	46975037	+	9.67013	NA	Intergenic	CpG	-12577	NM_194255	6573	Hs.84190	NM_003056	HPRD:02691	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_21636	chr11	120172757	120172880	+	9.67013	NA	intron (NM_014352, intron 5 of 12)	intron (NM_014352, intron 5 of 12)	-23020	NM_174926	219902	Hs.643516	NM_174926	HPRD:14461	TMEM136	-	transmembrane protein 136	protein-coding
19-PTNLD28-TUMOR_peak_107123	chrUn_gl000221	79758	80168	+	9.66804	NA	NA	CpG	NA	NA								
19-PTNLD28-TUMOR_peak_37028	chr16	28385705	28385899	+	9.66804	NA	Intergenic	Intergenic	-11621	NM_001282524	728741	Hs.726467	NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family, member B6	protein-coding
19-PTNLD28-TUMOR_peak_86702	chr6	32016040	32016161	+	9.66520	NA	intron (NM_019105, intron 29 of 43)	intron (NM_019105, intron 29 of 43)	-2195	NM_032470	7148	Hs.485104	NM_019105	HPRD:02993	TNXB	EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS	tenascin XB	protein-coding
19-PTNLD28-TUMOR_peak_87433	chr6	41559841	41559981	+	9.66348	NA	intron (NM_001012426, intron 13 of 16)	intron (NM_001012426, intron 13 of 16)	-6550	NR_039784	100616178		NR_039784		MIR4641	-	microRNA 4641	ncRNA
19-PTNLD28-TUMOR_peak_2351	chr1	35916730	35916899	+	9.66348	NA	intron (NM_024874, intron 13 of 20)	intron (NM_024874, intron 13 of 20)	106223	NM_024874	79932	Hs.456507	NM_024874	HPRD:11164	KIAA0319L	-	KIAA0319-like	protein-coding
19-PTNLD28-TUMOR_peak_63372	chr21	36901041	36901284	+	9.66348	NA	intron (NR_073512, intron 1 of 2)	intron (NR_073512, intron 1 of 2)	51900	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_31854	chr14	95215262	95215491	+	9.66348	NA	Intergenic	Intergenic	21123	NM_173849	145258	Hs.440438	NM_173849	HPRD:15928	GSC	SAMS	goosecoid homeobox	protein-coding
19-PTNLD28-TUMOR_peak_26057	chr12	107162009	107162236	+	9.66348	NA	intron (NR_040246, intron 1 of 3)	intron (NR_040246, intron 1 of 3)	-6277	NM_018157	55188	Hs.131306	NM_018157	HPRD:16452	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
19-PTNLD28-TUMOR_peak_38001	chr16	56905288	56905479	+	9.66348	NA	intron (NM_001126107, intron 6 of 25)	intron (NM_001126107, intron 6 of 25)	6264	NM_001126108	6559	Hs.669115	NM_000339	HPRD:02984	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 (sodium/chloride transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_2687	chr1	40273397	40273549	+	9.66348	NA	Intergenic	SVA_B|Other|Other	-18940	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
19-PTNLD28-TUMOR_peak_17255	chr11	12727499	12727773	+	9.66348	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	31667	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_34354	chr15	72008503	72008630	+	9.65965	NA	intron (NM_001286429, intron 2 of 11)	MLT1C|LTR|ERVL-MaLR	-24688	NR_120346	101929173	Hs.680593	NR_120346		LOC101929173	-	uncharacterized LOC101929173	ncRNA
19-PTNLD28-TUMOR_peak_80247	chr5	64010257	64010375	+	9.65965	NA	intron (NM_001164442, intron 2 of 2)	L1PA2|LINE|L1	24181	NM_001164442	100132916	Hs.591776	NM_001164442	ENSG00000145642	FAM159B	-	family with sequence similarity 159, member B	protein-coding
19-PTNLD28-TUMOR_peak_72188	chr3	167729299	167729448	+	9.65965	NA	intron (NM_014498, intron 14 of 15)	L1PA2|LINE|L1	84044	NM_014498	27333	Hs.143600	NM_014498	HPRD:08429	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_82790	chr5	141433144	141433298	+	9.65965	NA	Intergenic	Intergenic	-40601	NM_005471	10007	Hs.633853	NM_005471	HPRD:09048	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
19-PTNLD28-TUMOR_peak_46148	chr18	62955059	62955205	+	9.65965	NA	Intergenic	Intergenic	-462356	NM_033646	1005	Hs.657522	NM_004361	HPRD:12049	CDH7	CDH7L1	cadherin 7, type 2	protein-coding
19-PTNLD28-TUMOR_peak_105633	chr9	117771012	117771113	+	9.65965	NA	Intergenic	Intergenic	-78187	NM_001252290	944	Hs.494901	NM_001244		TNFSF8	CD153|CD30L|CD30LG	tumor necrosis factor (ligand) superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_100438	chr8	122613918	122614211	+	9.65965	NA	Intergenic	L2a|LINE|L2	-37522	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39274	chr16	87518550	87518826	+	9.65965	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	6772	NM_015144	23174	Hs.156231	NM_015144	HPRD:18316	ZCCHC14	BDG-29|BDG29	zinc finger, CCHC domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_30756	chr14	64867923	64868040	+	9.65965	NA	intron (NM_005956, intron 2 of 27)	AluJo|SINE|Alu	13222	NM_005956	4522	Hs.652308	NM_005956	HPRD:01403	MTHFD1	MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_33267	chr15	42083885	42084004	+	9.65965	NA	intron (NR_049762, intron 2 of 28)	intron (NR_049762, intron 2 of 28)	17312	NR_049761	23005	Hs.513661	NM_014994	HPRD:17465	MAPKBP1	JNKBP-1	mitogen-activated protein kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21338	chr11	115398990	115399237	+	9.65965	NA	Intergenic	MER70A|LTR|ERVL	-23872	NM_001301043	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_14628	chr10	82251541	82251863	+	9.65965	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	37664	NM_001128309	81619	Hs.718943	NM_030927	HPRD:18196	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
19-PTNLD28-TUMOR_peak_45056	chr18	26315734	26316034	+	9.65965	NA	Intergenic	Intergenic	-558439	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_21579	chr11	119244980	119245107	+	9.65965	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	7393	NM_001243759	9099	Hs.524085	NM_004205	HPRD:05287	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_52833	chr2	55065818	55065979	+	9.65965	NA	intron (NM_001039753, intron 6 of 40)	intron (NM_001039753, intron 6 of 40)	113749	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
19-PTNLD28-TUMOR_peak_98648	chr8	49022350	49022545	+	9.65965	NA	Intergenic	MLT2B4|LTR|ERVL	101452	NM_003350	7336	Hs.491695	NM_003350		UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding
19-PTNLD28-TUMOR_peak_55984	chr2	137931160	137931375	+	9.65965	NA	intron (NM_001080427, intron 6 of 26)	intron (NM_001080427, intron 6 of 26)	182805	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_70998	chr3	134168218	134168353	+	9.65965	NA	Intergenic	Intergenic	11616	NR_039951	100616281		NR_039951	miRBase:MI0017435	MIR4788	-	microRNA 4788	ncRNA
19-PTNLD28-TUMOR_peak_107993	chrX	40122000	40122137	+	9.65965	NA	promoter-TSS (NR_110386)	promoter-TSS (NR_110386)	-102	NR_110386	101927476	Hs.522607	NR_110386	ENSG00000236393	LOC101927476	-	uncharacterized LOC101927476	ncRNA
19-PTNLD28-TUMOR_peak_96445	chr7	151751860	151752179	+	9.65965	NA	intron (NM_022087, intron 1 of 11)	MLT2D|LTR|ERVL	29241	NM_022087	63917	Hs.647109	NM_022087	HPRD:13560	GALNT11	GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
19-PTNLD28-TUMOR_peak_23890	chr12	44976390	44976688	+	9.65965	NA	intron (NM_006159, intron 16 of 20)	MSTD|LTR|ERVL-MaLR	292905	NM_001145109	4753	Hs.505326	NM_006159	HPRD:11891	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_44581	chr18	11175405	11175530	+	9.65965	NA	Intergenic	Intergenic	-26706	NM_022068	63895	Hs.436902	NM_022068	HPRD:07636	PIEZO2	C18orf30|C18orf58|DA3|DA5|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo-type mechanosensitive ion channel component 2	protein-coding
19-PTNLD28-TUMOR_peak_42109	chr17	47304932	47305026	+	9.65928	NA	intron (NM_178500, intron 1 of 2)	intron (NM_178500, intron 1 of 2)	3149	NM_001143804	162466	Hs.405607	NM_178500	HPRD:17847	PHOSPHO1	-	phosphatase, orphan 1	protein-coding
19-PTNLD28-TUMOR_peak_82209	chr5	133485469	133485652	+	9.65928	NA	Intergenic	Intergenic	27164	NM_170679	6500	Hs.171626	NM_006930		SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50497	chr19	57863333	57863468	+	9.65928	NA	intron (NM_020657, intron 1 of 2)	L2|LINE|L2	758	NM_001290319	57343	Hs.287374	NM_020657	HPRD:15766	ZNF304	-	zinc finger protein 304	protein-coding
19-PTNLD28-TUMOR_peak_56831	chr2	169103382	169103750	+	9.65928	NA	intron (NM_013233, intron 1 of 17)	CpG	539	NM_013233	27347	Hs.276271	NM_013233	HPRD:09627	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
19-PTNLD28-TUMOR_peak_26991	chr12	125124810	125124953	+	9.65916	NA	Intergenic	Intergenic	-72871	NM_001206654	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_86152	chr6	26458726	26458886	+	9.65916	NA	intron (NM_001197233, intron 1 of 6)	intron (NM_001197233, intron 1 of 6)	674	NM_001197233	11120	Hs.159028	NM_007049	HPRD:12544	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin, subfamily 2, member A1	protein-coding
19-PTNLD28-TUMOR_peak_85210	chr6	8228649	8228794	+	9.65520	NA	Intergenic	AluSx|SINE|Alu	-125893	NM_004280	9521	Hs.602353	NM_004280	HPRD:10931	EEF1E1	AIMP3|P18	eukaryotic translation elongation factor 1 epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_50338	chr19	55627681	55627816	+	9.65520	NA	intron (NM_017607, intron 1 of 21)	intron (NM_017607, intron 1 of 21)	1220	NM_017607	54776	Hs.631579	NM_017607	HPRD:11452	PPP1R12C	LENG3|MBS85|p84|p85	protein phosphatase 1, regulatory subunit 12C	protein-coding
19-PTNLD28-TUMOR_peak_32886	chr15	31733076	31733512	+	9.64754	NA	Intergenic	CpG	114211	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_65844	chr22	44481657	44481800	+	9.64754	NA	intron (NM_001243385, intron 1 of 12)	intron (NM_001243385, intron 1 of 12)	16731	NM_001243385	29780	Hs.475074	NM_013327	HPRD:16284	PARVB	CGI-56	parvin, beta	protein-coding
19-PTNLD28-TUMOR_peak_37703	chr16	49526173	49526642	+	9.64754	NA	intron (NM_015069, intron 7 of 7)	CpG	118599	NM_144602	123970	Hs.125875	NM_144602	HPRD:14560	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_83494	chr5	157285627	157285946	+	9.64754	NA	intron (NM_001195556, intron 1 of 11)	CpG	397	NM_014666	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_1627	chr1	26201752	26202296	+	9.64754	NA	Intergenic	CpG	-4280	NM_178422	164091	Hs.523652	NM_178422	HPRD:09692	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member VII	protein-coding
19-PTNLD28-TUMOR_peak_9700	chr1	206158229	206158330	+	9.64740	NA	Intergenic	Intergenic	19368	NM_001123168	729533	Hs.661924	NM_001123168		FAM72A	LMPIP	family with sequence similarity 72, member A	protein-coding
19-PTNLD28-TUMOR_peak_50133	chr19	53038791	53038939	+	9.64740	NA	intron (NM_001039886, intron 2 of 4)	intron (NM_001039886, intron 2 of 4)	7956	NM_001039886	388558	Hs.729294	NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
19-PTNLD28-TUMOR_peak_84509	chr5	179498117	179498388	+	9.64491	NA	intron (NM_001280801, intron 1 of 7)	intron (NM_001280801, intron 1 of 7)	866	NM_001280801	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_73039	chr3	187685993	187686107	+	9.64428	NA	Intergenic	Intergenic	-185611	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_47485	chr19	13106272	13106375	+	9.64428	NA	promoter-TSS (NM_002501)	promoter-TSS (NM_002501)	-261	NM_002501	4784	Hs.257970	NM_002501	HPRD:01234	NFIX	MRSHSS|NF1A|SOTOS2	nuclear factor I/X (CCAAT-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_109948	chrX	153458287	153458584	+	9.64428	NA	intron (NM_001048181, intron 4 of 5)	intron (NM_001048181, intron 4 of 5)	10350	NM_001048181	728458	Hs.571751	NM_001048181	ENSG00000166160	OPN1MW2	GOP	opsin 1 (cone pigments), medium-wave-sensitive 2	protein-coding
19-PTNLD28-TUMOR_peak_98212	chr8	37699518	37699868	+	9.64428	NA	exon (NM_032777, exon 19 of 19)	exon (NM_032777, exon 19 of 19)	7738	NM_018310	55290	Hs.709301	NM_018310		BRF2	BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_49434	chr19	46225348	46225543	+	9.64428	NA	intron (NM_001080469, intron 1 of 1)	intron (NM_001080469, intron 1 of 1)	8706	NM_001080469	23403	Hs.128702	NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
19-PTNLD28-TUMOR_peak_70195	chr3	122810193	122810347	+	9.64428	NA	intron (NR_028444, intron 2 of 15)	intron (NR_028444, intron 2 of 15)	24414	NR_028444	10954	Hs.477352	NM_006810	HPRD:08334	PDIA5	PDIR	protein disulfide isomerase family A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_45768	chr18	48556021	48556246	+	9.64428	NA	promoter-TSS (NM_005359)	promoter-TSS (NM_005359)	-450	NM_005359	4089	Hs.75862	NM_005359	HPRD:02995	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
19-PTNLD28-TUMOR_peak_98662	chr8	49321089	49321193	+	9.64428	NA	Intergenic	Intergenic	-142986	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_38736	chr16	75144776	75145352	+	9.64334	NA	TTS (NM_153486)	TTS (NM_153486)	5606	NM_194436	197257	Hs.380929	NM_153486	HPRD:06318	LDHD	DLD	lactate dehydrogenase D	protein-coding
19-PTNLD28-TUMOR_peak_9510	chr1	204284459	204284681	+	9.64334	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	44487	NM_014935	22874	Hs.253146	NM_014935	HPRD:09685	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing, family A member 6	protein-coding
19-PTNLD28-TUMOR_peak_83751	chr5	167914244	167914443	+	9.64180	NA	intron (NM_002887, intron 1 of 14)	AluY|SINE|Alu	880	NM_002887	5917	Hs.654907	NM_002887	HPRD:00142	RARS	ArgRS|DALRD1	arginyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_41407	chr17	39058374	39058518	+	9.63966	NA	Intergenic	Intergenic	-16951	NM_019010	54474	Hs.84905	NM_019010	HPRD:12193	KRT20	CD20|CK-20|CK20|K20|KRT21	keratin 20	protein-coding
19-PTNLD28-TUMOR_peak_80992	chr5	81717016	81717267	+	9.63966	NA	Intergenic	Intergenic	141860	NM_001017971	92270	Hs.729805	NM_001017971	HPRD:18710	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_11415	chr1	244893841	244894138	+	9.63966	NA	Intergenic	CpG	77639	NR_123736	51029	Hs.498317	NM_016076	HPRD:15153	DESI2	C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_12041	chr10	12341380	12341513	+	9.63966	NA	Intergenic	Intergenic	-50137	NM_020397	57118	Hs.659517	NM_020397	HPRD:06409	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
19-PTNLD28-TUMOR_peak_103226	chr9	42677677	42677818	+	9.63966	NA	Intergenic	L2a|LINE|L2	-40319	NM_199244	349334	Hs.712520	NM_199244	HPRD:17013	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4-like 4	protein-coding
19-PTNLD28-TUMOR_peak_67616	chr3	39291704	39291893	+	9.63814	NA	Intergenic	Intergenic	29729	NM_001337	1524	Hs.78913	NM_001337	HPRD:03277	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	chemokine (C-X3-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_9652	chr1	205533067	205533200	+	9.63814	NA	Intergenic	Intergenic	-4979	NM_181644	148808	Hs.567714	NM_181644	HPRD:13228	MFSD4	UNQ3064	major facilitator superfamily domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_12052	chr10	12436372	12436645	+	9.63814	NA	intron (NM_020397, intron 1 of 9)	MER21C|LTR|ERVL	44925	NM_153498	57118	Hs.659517	NM_020397	HPRD:06409	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
19-PTNLD28-TUMOR_peak_77987	chr4	169686883	169687256	+	9.63814	NA	intron (NM_016081, intron 10 of 20)	intron (NM_016081, intron 10 of 20)	-66087	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_16267	chr10	131126906	131127014	+	9.63814	NA	Intergenic	Intergenic	-138494	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_68978	chr3	71739759	71740036	+	9.63814	NA	intron (NM_173359, intron 6 of 7)	Tigger15a|DNA|TcMar-Tigger	34629	NM_001134651	317649	Hs.581355	NM_173359	HPRD:10687	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
19-PTNLD28-TUMOR_peak_64829	chr22	25575039	25575142	+	9.63814	NA	intron (NM_001145206, intron 7 of 10)	CpG	-20727	NM_004076	1417	Hs.533022	NM_004076	HPRD:00431	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin, beta B3	protein-coding
19-PTNLD28-TUMOR_peak_48128	chr19	19151316	19151516	+	9.63814	NA	intron (NM_001199196, intron 2 of 8)	intron (NM_001199196, intron 2 of 8)	7029	NM_033415	93436	Hs.77876	NM_033415	HPRD:12488	ARMC6	R30923_1	armadillo repeat containing 6	protein-coding
19-PTNLD28-TUMOR_peak_34179	chr15	68803919	68804357	+	9.63814	NA	Intergenic	L2c|LINE|L2	-67170	NM_006091	10391	Hs.551213	NM_006091	HPRD:05416	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
19-PTNLD28-TUMOR_peak_29638	chr14	25510757	25510894	+	9.63814	NA	intron (NM_014178, intron 1 of 5)	intron (NM_014178, intron 1 of 5)	8270	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_30182	chr14	50407860	50408017	+	9.63814	NA	Intergenic	Intergenic	-25179	NR_106724	102464828		NR_106724		MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
19-PTNLD28-TUMOR_peak_85031	chr6	5181898	5182072	+	9.63814	NA	intron (NM_001164841, intron 2 of 3)	intron (NM_001164841, intron 2 of 3)	-33429	NR_037462	100500900		NR_037462		MIR3691	-	microRNA 3691	ncRNA
19-PTNLD28-TUMOR_peak_27489	chr13	24734494	24734702	+	9.63814	NA	promoter-TSS (NM_001166271)	promoter-TSS (NM_001166271)	-257	NM_001166271	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_13862	chr10	64133885	64134190	+	9.63814	NA	5' UTR (NM_014951, exon 1 of 5)	5' UTR (NM_014951, exon 1 of 5)	121	NM_014951	22891	Hs.22653	NM_014951	HPRD:06380	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
19-PTNLD28-TUMOR_peak_97950	chr8	29120475	29120742	+	9.63814	NA	promoter-TSS (NM_015254)	promoter-TSS (NM_015254)	2	NM_015254	23303	Hs.444767	NM_015254	HPRD:09556	KIF13B	GAKIN	kinesin family member 13B	protein-coding
19-PTNLD28-TUMOR_peak_88804	chr6	93251316	93251611	+	9.63814	NA	Intergenic	Intergenic	-851317	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_73506	chr3	195537108	195537245	+	9.63196	NA	intron (NM_018406, intron 1 of 24)	intron (NM_018406, intron 1 of 24)	1668	NM_004532	4585	Hs.369646	NM_004532	HPRD:11829	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_35023	chr15	85890059	85890231	+	9.63196	NA	Intergenic	Intergenic	-33702	NM_007200	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_32731	chr15	28949329	28949459	+	9.62995	NA	intron (NM_001282468, intron 13 of 18)	intron (NM_001282468, intron 13 of 18)	8173	NM_001282468	653720	Hs.562625	NM_001282468		GOLGA8M	-	golgin A8 family, member M	protein-coding
19-PTNLD28-TUMOR_peak_56915	chr2	171627558	171628001	+	9.62995	NA	promoter-TSS (NR_110185)	promoter-TSS (NR_110185)	-503	NR_110185	101926913	Hs.301715	NR_110185	ENSG00000234350	LOC101926913	-	uncharacterized LOC101926913	ncRNA
19-PTNLD28-TUMOR_peak_1906	chr1	29460268	29460559	+	9.62995	NA	Intergenic	Intergenic	-9992	NM_001003682	399474	Hs.712722	NM_001003682	HPRD:13188	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
19-PTNLD28-TUMOR_peak_39143	chr16	85063154	85063289	+	9.62995	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	1864	NM_001286566	9764	Hs.301658	NM_014732	HPRD:17192	KIAA0513	-	KIAA0513	protein-coding
19-PTNLD28-TUMOR_peak_19683	chr11	69485095	69485233	+	9.62995	NA	intron (NM_153451, intron 3 of 4)	intron (NM_153451, intron 3 of 4)	5001	NM_153451	220064	Hs.667996	NM_153451	HPRD:06245	ORAOV1	TAOS1	oral cancer overexpressed 1	protein-coding
19-PTNLD28-TUMOR_peak_41989	chr17	45920568	45920709	+	9.62995	NA	Intergenic	Intergenic	-1939	NM_001145023	90507	Hs.239718	NM_138355	HPRD:10213	SCRN2	Ses2	secernin 2	protein-coding
19-PTNLD28-TUMOR_peak_78598	chr5	554062	554228	+	9.62995	NA	Intergenic	Intergenic	-18148	NR_039661	100616381		NR_039661	miRBase:MI0016802	MIR4456	-	microRNA 4456	ncRNA
19-PTNLD28-TUMOR_peak_84897	chr6	3455408	3455552	+	9.62995	NA	intron (NM_001286456, intron 1 of 3)	intron (NM_001286456, intron 1 of 3)	1313	NM_001286456	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_17933	chr11	33791170	33791351	+	9.62995	NA	intron (NM_012175, intron 2 of 10)	intron (NM_012175, intron 2 of 10)	4811	NM_012175	26273	Hs.406787	NM_012175	HPRD:16433	FBXO3	FBA|FBX3	F-box protein 3	protein-coding
19-PTNLD28-TUMOR_peak_89134	chr6	112271873	112272287	+	9.62995	NA	Intergenic	Intergenic	-77425	NM_002037	2534	Hs.390567	NM_002037	HPRD:00655	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_38630	chr16	71843445	71843622	+	9.62995	NA	promoter-TSS (NM_001128)	promoter-TSS (NM_001128)	-557	NM_001128	164	Hs.461253	NM_001128	HPRD:04637	AP1G1	ADTG|CLAPG1	adaptor-related protein complex 1, gamma 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_64352	chr22	19711307	19711472	+	9.62995	NA	TTS (NM_001009939)	TTS (NM_001009939)	323	NM_000407	2812	Hs.283743	NM_000407		GP1BB	BDPLT1|BS|CD42C|GPIBB	glycoprotein Ib (platelet), beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_60082	chr20	19739565	19739693	+	9.62785	NA	Intergenic	CpG	-127536	NM_001242581	54453	Hs.472270	NM_018993	HPRD:15249	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
19-PTNLD28-TUMOR_peak_41321	chr17	37894041	37894308	+	9.62463	NA	promoter-TSS (NM_005310)	promoter-TSS (NM_005310)	12	NM_005310	2886	Hs.86859	NM_005310	HPRD:03311	GRB7	-	growth factor receptor-bound protein 7	protein-coding
19-PTNLD28-TUMOR_peak_87060	chr6	35996693	35996853	+	9.62463	NA	intron (NM_139014, intron 1 of 10)	intron (NM_139014, intron 1 of 10)	1319	NM_139012	1432	Hs.485233	NM_001315	HPRD:02619	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_32285	chr14	105149604	105149825	+	9.62344	NA	Intergenic	Intergenic	-5628	NR_039860	100616300		NR_039860	miRBase:MI0017344	MIR4710	-	microRNA 4710	ncRNA
19-PTNLD28-TUMOR_peak_51329	chr2	16847032	16847136	+	9.61992	NA	promoter-TSS (NM_030797)	promoter-TSS (NM_030797)	50	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_88032	chr6	53493782	53493992	+	9.61992	NA	Intergenic	Intergenic	36619	NM_001003760	401265	Hs.131064	NM_001003760	HPRD:13923	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch-like family member 31	protein-coding
19-PTNLD28-TUMOR_peak_95128	chr7	128274042	128274149	+	9.61992	NA	Intergenic	L2a|LINE|L2	-7200	NR_024368	402483	Hs.722350	NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
19-PTNLD28-TUMOR_peak_38697	chr16	74395673	74395807	+	9.61992	NA	intron (NR_026950, intron 1 of 14)	L2a|LINE|L2	6413	NR_026950	283922	Hs.558726	NR_026950	ENSG00000214331	LOC283922	-	pyruvate dehydrogenase phosphatase regulatory subunit pseudogene	pseudo
19-PTNLD28-TUMOR_peak_107140	chrUn_gl000223	149012	149191	+	9.61992	NA	Intergenic	AluY|SINE|Alu	-29371	NM_001256280	7574	Hs.489608	NM_019591	HPRD:01922	ZNF26	HEL-179|KOX20	zinc finger protein 26	protein-coding
19-PTNLD28-TUMOR_peak_90943	chr7	2708165	2708288	+	9.61992	NA	Intergenic	L2a|LINE|L2	-10930	NM_133463	155185	Hs.42221	NM_133463	HPRD:17232	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_43513	chr17	74010436	74010703	+	9.61992	NA	exon (NM_001988, exon 18 of 22)	exon (NM_001988, exon 18 of 22)	12938	NM_001988	2125	Hs.500635	NM_001988	HPRD:03352	EVPL	EVPK	envoplakin	protein-coding
19-PTNLD28-TUMOR_peak_75998	chr4	83440263	83440510	+	9.61992	NA	intron (NM_001080506, intron 1 of 7)	intron (NM_001080506, intron 1 of 7)	42740	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
19-PTNLD28-TUMOR_peak_24519	chr12	54333553	54333713	+	9.61992	NA	promoter-TSS (NR_047507)	promoter-TSS (NR_047507)	-206	NR_047507	100874366	Hs.547385	NR_047507	ENSG00000249641	HOXC13-AS	HOXC-AS5	HOXC13 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_110008	chrX	153857337	153857465	+	9.61992	NA	Intergenic	Intergenic	4047	NR_027401	100132967		NR_027401		FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223, member A (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_91007	chr7	4082276	4082637	+	9.61992	NA	intron (NM_152744, intron 17 of 44)	intron (NM_152744, intron 17 of 44)	-86861	NM_001079653	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_73304	chr3	193419480	193419732	+	9.61992	NA	Intergenic	Intergenic	-74485	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90278	chr6	158652766	158652907	+	9.61992	NA	Intergenic	CpG	63457	NM_207118	404672	Hs.356224	NM_207118	HPRD:10581	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2	general transcription factor IIH, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_10801	chr1	230908969	230909123	+	9.61988	NA	intron (NM_016452, intron 7 of 18)	intron (NM_016452, intron 7 of 18)	25885	NM_016452	10753	Hs.498021	NM_006615	HPRD:05909	CAPN9	GC36|nCL-4	calpain 9	protein-coding
19-PTNLD28-TUMOR_peak_52649	chr2	47420418	47420560	+	9.61988	NA	intron (NR_110208, intron 4 of 4)	intron (NR_110208, intron 4 of 4)	-16749	NM_001743	805	Hs.468442	NM_001743	HPRD:00242	CALM2	CAMII|PHKD|PHKD2	calmodulin 2 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_43376	chr17	73074979	73075099	+	9.61988	NA	Intergenic	Intergenic	-8783	NM_001271765	9121	Hs.592095	NM_004695	HPRD:04856	SLC16A5	MCT5|MCT6	solute carrier family 16 (monocarboxylate transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_75888	chr4	79571312	79571540	+	9.61988	NA	intron (NR_038306, intron 2 of 2)	L2a|LINE|L2	4278	NR_038305	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_8743	chr1	183260602	183260783	+	9.61988	NA	intron (NM_170706, intron 3 of 10)	L2a|LINE|L2	13317	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_76975	chr4	125634524	125634669	+	9.61988	NA	promoter-TSS (NM_020337)	promoter-TSS (NM_020337)	-709	NM_020337	57182	Hs.480694	NM_020337	HPRD:13843	ANKRD50	-	ankyrin repeat domain 50	protein-coding
19-PTNLD28-TUMOR_peak_40067	chr17	8076357	8076537	+	9.61988	NA	3' UTR (NM_032354, exon 5 of 5)	3' UTR (NM_032354, exon 5 of 5)	3267	NM_183065	84314	Hs.513933	NM_032354		TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
19-PTNLD28-TUMOR_peak_62367	chr20	57227327	57227542	+	9.61838	NA	intron (NM_001134772, intron 1 of 7)	intron (NM_001134772, intron 1 of 7)	1125	NM_003763	8675	Hs.307913	NM_003763	HPRD:04718	STX16	SYN16	syntaxin 16	protein-coding
19-PTNLD28-TUMOR_peak_26361	chr12	112546961	112547288	+	9.61838	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-489	NM_024953	80018	Hs.530941	NM_024953	HPRD:08578	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_55123	chr2	114357007	114357108	+	9.61363	NA	TTS (NR_024077)	TTS (NR_024077)	2096	NR_024005	84771	Hs.712940	NR_024004	ENSG00000236397	DDX11L2	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2	pseudo
19-PTNLD28-TUMOR_peak_33826	chr15	60689326	60689430	+	9.61346	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	807	NM_001002858	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_76009	chr4	83707322	83707459	+	9.61346	NA	intron (NM_001037582, intron 1 of 4)	intron (NM_001037582, intron 1 of 4)	12620	NM_024906	79966	Hs.379191	NM_024906	HPRD:09756	SCD5	ACOD4|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
19-PTNLD28-TUMOR_peak_44049	chr17	80009694	80010035	+	9.61254	NA	promoter-TSS (NM_002917)	promoter-TSS (NM_002917)	101	NM_212492	2873	Hs.268530	NM_004127	HPRD:15991	GPS1	COPS1|CSN1	G protein pathway suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_47431	chr19	12759022	12759163	+	9.61254	NA	exon (NM_000528, exon 21 of 24)	exon (NM_000528, exon 21 of 24)	18499	NM_001173498	4125	Hs.356769	NM_000528	HPRD:02007	MAN2B1	LAMAN|MANB	mannosidase, alpha, class 2B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_95202	chr7	129109393	129109482	+	9.61254	NA	intron (NM_020704, intron 17 of 20)	intron (NM_020704, intron 17 of 20)	-32883	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61810	chr20	49015968	49016092	+	9.61254	NA	Intergenic	MIRb|SINE|MIR	-78151	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_29117	chr13	113339680	113339823	+	9.61241	NA	TTS (NM_207440)	TTS (NM_207440)	-4892	NM_015205	23250	Hs.29189	NM_015205	HPRD:12059	ATP11A	ATPIH|ATPIS	ATPase, class VI, type 11A	protein-coding
19-PTNLD28-TUMOR_peak_55029	chr2	113437180	113437388	+	9.61241	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	33850	NM_005415	6574	Hs.187946	NM_005415	HPRD:08846	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 (phosphate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_27012	chr12	125242868	125243129	+	9.61241	NA	Intergenic	Intergenic	105521	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_92426	chr7	47419602	47419722	+	9.61241	NA	intron (NM_022748, intron 16 of 30)	intron (NM_022748, intron 16 of 30)	202080	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_49932	chr19	50642522	50642663	+	9.60582	NA	promoter-TSS (NR_024231)	promoter-TSS (NR_024231)	-98	NR_024230	100170217	Hs.723095	NR_024230		SNAR-B2	-	small ILF3/NF90-associated RNA B2	snRNA
19-PTNLD28-TUMOR_peak_96354	chr7	150865374	150865542	+	9.60479	NA	promoter-TSS (NM_001098834)	promoter-TSS (NM_001098834)	-823	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_15443	chr10	105536971	105537321	+	9.60479	NA	intron (NM_014631, intron 2 of 13)	intron (NM_014631, intron 2 of 13)	30609	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38197	chr16	65692797	65693080	+	9.60479	NA	Intergenic	Intergenic	-82735	NR_027755	283867	Hs.444774	NM_001101346	ENSG00000261742	LINC00922	-	long intergenic non-protein coding RNA 922	ncRNA
19-PTNLD28-TUMOR_peak_53095	chr2	64998115	64998246	+	9.60479	NA	Intergenic	Intergenic	92585	NR_110224	101927438	Hs.580313	NR_110224		LOC101927438	-	uncharacterized LOC101927438	ncRNA
19-PTNLD28-TUMOR_peak_14172	chr10	72852679	72853087	+	9.60479	NA	Intergenic	Intergenic	-119409	NM_001244889	219699	Hs.522997	NM_170744	HPRD:08487	UNC5B	UNC5H2|p53RDL1	unc-5 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_53582	chr2	74814852	74815042	+	9.60268	NA	intron (NM_138804, intron 4 of 10)	intron (NM_138804, intron 4 of 10)	33435	NM_001381	1796	Hs.103854	NM_001381	HPRD:04228	DOK1	P62DOK	docking protein 1, 62kDa (downstream of tyrosine kinase 1)	protein-coding
19-PTNLD28-TUMOR_peak_41671	chr17	41984054	41984184	+	9.60268	NA	intron (NM_001278381, intron 1 of 13)	intron (NM_001278381, intron 1 of 13)	1191	NM_001278381	4355	Hs.514208	NM_005374	HPRD:02837	MPP2	DLG2	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding
19-PTNLD28-TUMOR_peak_67318	chr3	29494764	29495211	+	9.60268	NA	intron (NM_001003792, intron 2 of 13)	intron (NM_001003792, intron 2 of 13)	172184	NM_001177711	27303	Hs.221436	NM_014483	HPRD:16155	RBMS3	-	RNA binding motif, single stranded interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_30625	chr14	61092212	61092686	+	9.60268	NA	Intergenic	AluY|SINE|Alu	23706	NM_005982	6495	Hs.633506	NM_005982		SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_65128	chr22	31588679	31588837	+	9.60268	NA	intron (NM_001135825, intron 3 of 4)	intron (NM_001135825, intron 3 of 4)	-19492	NM_005569	3985	Hs.474596	NM_005569	HPRD:03585	LIMK2	-	LIM domain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_60869	chr20	35905072	35905200	+	9.60268	NA	Intergenic	Intergenic	-12915	NM_001003897	63905	Hs.6126	NM_022077	HPRD:14356	MANBAL	-	mannosidase, beta A, lysosomal-like	protein-coding
19-PTNLD28-TUMOR_peak_56480	chr2	158348850	158348961	+	9.60268	NA	Intergenic	Intergenic	-48301	NM_004288	9595	Hs.270	NM_004288	HPRD:09192	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_97465	chr8	20233883	20234023	+	9.60268	NA	Intergenic	Intergenic	100669	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46814	chr19	4759847	4760010	+	9.60268	NA	Intergenic	CpG	-9189	NR_027148	284424	Hs.326728	NM_174947	HPRD:16628	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_86082	chr6	26064882	26064985	+	9.60268	NA	Intergenic	Intergenic	-8234	NM_005319	3006	Hs.7644	NM_005319	HPRD:07514	HIST1H1C	H1.2|H1C|H1F2|H1s-1	histone cluster 1, H1c	protein-coding
19-PTNLD28-TUMOR_peak_64516	chr22	21419356	21419641	+	9.60268	NA	Intergenic	FRAM|SINE|Alu	19249	NR_110991	400891	Hs.291198	NM_001013675	HPRD:18419	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
19-PTNLD28-TUMOR_peak_878	chr1	13103792	13103891	+	9.60268	NA	Intergenic	Intergenic	13910	NM_001013407	343068	Hs.567864	NM_001013407	ENSG00000204502	PRAMEF5	PRAMEF23|PRAMEF5L	PRAME family member 5	protein-coding
19-PTNLD28-TUMOR_peak_70821	chr3	131090184	131090422	+	9.60268	NA	intron (NR_038976, intron 2 of 3)	intron (NR_038976, intron 2 of 3)	9585	NR_027766	152195	Hs.380350	NM_194289	HPRD:14093	NUDT16P1	NUDT16P	nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_88884	chr6	100270680	100270838	+	9.60268	NA	Intergenic	Intergenic	-171155	NR_038384	728012	Hs.434366	NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71726	chr3	150721333	150721438	+	9.60268	NA	intron (NR_024066, intron 1 of 5)	MER68|LTR|ERVL	-30599	NM_001195794	7401	Hs.745448	NM_052995	HPRD:05905	CLRN1	RP61|USH3|USH3A	clarin 1	protein-coding
19-PTNLD28-TUMOR_peak_9853	chr1	208380850	208381219	+	9.60268	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	36631	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_46990	chr19	7739317	7739427	+	9.60268	NA	Intergenic	Intergenic	-2571	NM_174918	199675	Hs.709539	NM_174918		MCEMP1	C19orf59	mast cell-expressed membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58713	chr2	228520287	228520381	+	9.60268	NA	Intergenic	MLT1C-int|LTR|ERVL-MaLR	-22298	NM_020161	56918	Hs.283092	NM_020161	HPRD:13208	C2orf83	-	chromosome 2 open reading frame 83	protein-coding
19-PTNLD28-TUMOR_peak_629	chr1	9736993	9737112	+	9.60268	NA	intron (NM_005026, intron 1 of 23)	intron (NM_005026, intron 1 of 23)	-22408	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	ncRNA
19-PTNLD28-TUMOR_peak_52915	chr2	58663774	58663933	+	9.60268	NA	Intergenic	Intergenic	-84035	NR_033873	400955	Hs.503210	NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA
19-PTNLD28-TUMOR_peak_103726	chr9	72621220	72621420	+	9.60268	NA	Intergenic	Intergenic	-37177	NM_153267	256691	Hs.547172	NM_153267	HPRD:14353	MAMDC2	-	MAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_9344	chr1	202508297	202508639	+	9.60268	NA	promoter-TSS (NM_001197131)	promoter-TSS (NM_001197131)	-774	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_41319	chr17	37879914	37880158	+	9.60268	NA	intron (NM_001289936, intron 22 of 30)	intron (NM_001289936, intron 22 of 30)	-2712	NR_039881	100616132		NR_039881		MIR4728	-	microRNA 4728	ncRNA
19-PTNLD28-TUMOR_peak_24595	chr12	55182402	55182977	+	9.60268	NA	Intergenic	L1HS|LINE|L1	-65610	NM_058173	118430	Hs.348419	NM_058173	HPRD:17290	MUCL1	SBEM	mucin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4785	chr1	90270350	90270476	+	9.60095	NA	Intergenic	Intergenic	-16160	NM_001134479	55144	Hs.482087	NM_018103	HPRD:11287	LRRC8D	LRRC5	leucine rich repeat containing 8 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_50449	chr19	56670488	56670688	+	9.60095	NA	intron (NM_001253792, intron 4 of 4)	(TCCA)n|Simple_repeat|Simple_repeat	-16801	NM_033106	85569	Hs.283915	NM_033106	HPRD:17027	GALP	-	galanin-like peptide	protein-coding
19-PTNLD28-TUMOR_peak_1571	chr1	25031331	25031449	+	9.60095	NA	Intergenic	Intergenic	-40370	NM_013943	25932	Hs.440544	NM_013943	HPRD:05943	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
19-PTNLD28-TUMOR_peak_52431	chr2	43627128	43627283	+	9.60095	NA	intron (NM_022065, intron 28 of 37)	intron (NM_022065, intron 28 of 37)	172855	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_24535	chr12	54534868	54535016	+	9.60095	NA	Intergenic	Intergenic	15087	NR_026656	400043	Hs.19193	NR_026656	ENSG00000250742	LOC400043	-	uncharacterized LOC400043	ncRNA
19-PTNLD28-TUMOR_peak_66750	chr3	13588323	13588471	+	9.60095	NA	Intergenic	Intergenic	-2228	NM_001998	2199	Hs.198862	NM_001998	HPRD:00630	FBLN2	-	fibulin 2	protein-coding
19-PTNLD28-TUMOR_peak_31067	chr14	70152075	70152251	+	9.60095	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	73853	NM_014734	9766	Hs.440025	NM_014734	HPRD:10010	KIAA0247	-	KIAA0247	protein-coding
19-PTNLD28-TUMOR_peak_21623	chr11	120039611	120039761	+	9.60095	NA	Intergenic	CpG	-30823	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_42511	chr17	55938253	55938900	+	9.59500	NA	TTS (NM_001271875)	TTS (NM_001271875)	-11143	NM_016070	51649	Hs.5836	NM_016070		MRPS23	HSPC329|MRP-S23	mitochondrial ribosomal protein S23	protein-coding
19-PTNLD28-TUMOR_peak_22068	chr11	128762932	128763101	+	9.59489	NA	intron (NM_000890, intron 1 of 2)	intron (NM_000890, intron 1 of 2)	1703	NM_000890	3762	Hs.444595	NM_000890		KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding
19-PTNLD28-TUMOR_peak_90561	chr6	168227157	168227471	+	9.59489	NA	promoter-TSS (NM_001040000)	promoter-TSS (NM_001040000)	162	NR_027906	653483	Hs.520556	NM_001042508	ENSG00000198221	MLLT4-AS1	C6orf124|HGC6.4|dJ431P23.3	MLLT4 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_10238	chr1	222791406	222791528	+	9.59489	NA	promoter-TSS (NM_198551)	promoter-TSS (NM_198551)	23	NM_198551	375056	Hs.118474	NM_198551	ENSG00000154305	MIA3	ARNT|D320|TANGO|TANGO1|UNQ6077	melanoma inhibitory activity family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_63136	chr21	32874306	32874661	+	9.59489	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	56807	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_10647	chr1	228678244	228678412	+	9.59489	NA	intron (NM_001010858, intron 2 of 3)	intron (NM_001010858, intron 2 of 3)	3260	NM_001010858	149603	Hs.356377	NM_001010858		RNF187	RACO-1|RACO1	ring finger protein 187	protein-coding
19-PTNLD28-TUMOR_peak_81441	chr5	106806009	106806161	+	9.59299	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	200511	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_101957	chr9	2016549	2016829	+	9.58991	NA	intron (NM_001289397, intron 1 of 32)	CpG	1470	NM_139045	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_87181	chr6	37138539	37138666	+	9.58979	NA	exon (NM_002648, exon 2 of 6)	exon (NM_002648, exon 2 of 6)	680	NM_001243186	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_2939	chr1	43250931	43251320	+	9.58881	NA	Intergenic	Intergenic	-2536	NM_001242750	100129924	Hs.720780	NM_001242750		LOC100129924	-	uncharacterized LOC100129924	protein-coding
19-PTNLD28-TUMOR_peak_25025	chr12	65672817	65672963	+	9.58881	NA	intron (NM_001193461, intron 1 of 6)	CpG	123	NM_001193461	253827	Hs.339024	NM_198080	HPRD:14785	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
19-PTNLD28-TUMOR_peak_62343	chr20	56754583	56754832	+	9.58881	NA	Intergenic	CpG	28724	NM_178456	128602	Hs.43977	NM_178456	HPRD:12787	C20orf85	LLC1|bA196N14.1	chromosome 20 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_67117	chr3	23021216	23021327	+	9.58881	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-223513	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_99014	chr8	66841568	66841761	+	9.58881	NA	Intergenic	Intergenic	-87695	NM_001242318	5150	Hs.527119	NM_002603		PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
19-PTNLD28-TUMOR_peak_109757	chrX	149862325	149862456	+	9.58881	NA	intron (NM_003828, intron 1 of 15)	intron (NM_003828, intron 1 of 15)	521	NM_003828	8776	Hs.347187	NM_003828	HPRD:02163	MTMR1	-	myotubularin related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42527	chr17	55995485	55995628	+	9.58881	NA	intron (NM_001271875, intron 1 of 10)	Charlie2a|DNA|hAT-Charlie	-14806	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70392	chr3	125041096	125041284	+	9.58881	NA	intron (NM_021964, intron 3 of 8)	intron (NM_021964, intron 3 of 8)	53008	NM_021964	7707	Hs.592591	NM_021964	HPRD:03540	ZNF148	BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
19-PTNLD28-TUMOR_peak_15074	chr10	98701829	98702131	+	9.58881	NA	intron (NM_001170765, intron 4 of 7)	SVA_E|Other|Other	-39061	NM_015652	26148	Hs.14555	NM_015652	HPRD:12563	C10orf12	-	chromosome 10 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_103392	chr9	65512128	65512304	+	9.58881	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2606	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_55403	chr2	121669209	121669397	+	9.58846	NA	intron (NM_005270, intron 1 of 12)	intron (NM_005270, intron 1 of 12)	114436	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_81614	chr5	112849875	112849974	+	9.58061	NA	intron (NM_022828, intron 1 of 29)	CpG	533	NM_022828	64848	Hs.231942	NM_022828	HPRD:11690	YTHDC2	CAHL	YTH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_99868	chr8	103738012	103738214	+	9.57796	NA	Intergenic	Intergenic	-69983	NM_005655	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_1915	chr1	29562897	29563089	+	9.57796	NA	promoter-TSS (NM_005704)	promoter-TSS (NM_005704)	-35	NM_005704	10076	Hs.19718	NM_005704	HPRD:03908	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase, receptor type, U	protein-coding
19-PTNLD28-TUMOR_peak_65752	chr22	42949770	42949978	+	9.57796	NA	promoter-TSS (NM_014509)	promoter-TSS (NM_014509)	6	NM_014509	253190	Hs.728878	NM_014509	HPRD:15908	SERHL2	dJ222E13.1	serine hydrolase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_105870	chr9	124081321	124081616	+	9.57796	NA	intron (NM_001127662, intron 9 of 16)	intron (NM_001127662, intron 9 of 16)	19389	NM_000177	2934	Hs.522373	NM_000177	HPRD:00674	GSN	ADF|AGEL	gelsolin	protein-coding
19-PTNLD28-TUMOR_peak_99136	chr8	70744724	70744834	+	9.57796	NA	exon (NM_030958, exon 2 of 10)	exon (NM_030958, exon 2 of 10)	625	NM_001146009	81796	Hs.152460	NM_030958	HPRD:15399	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	solute carrier organic anion transporter family, member 5A1	protein-coding
19-PTNLD28-TUMOR_peak_57591	chr2	196398785	196399232	+	9.57781	NA	Intergenic	Intergenic	-122524	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_9454	chr1	203567206	203567312	+	9.57781	NA	Intergenic	Intergenic	-28656	NM_001001396	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_17646	chr11	22213943	22214050	+	9.57781	NA	promoter-TSS (NM_001142649)	promoter-TSS (NM_001142649)	-726	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_24839	chr12	58819933	58820073	+	9.57684	NA	Intergenic	L1PA7|LINE|L1	355495	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_108438	chrX	55478503	55478842	+	9.57684	NA	TTS (NR_039764)	TTS (NR_039764)	150	NM_014061	28986	Hs.279819	NM_014061	HPRD:06633	MAGEH1	APR-1|APR1|MAGEH	melanoma antigen family H, 1	protein-coding
19-PTNLD28-TUMOR_peak_8669	chr1	182140373	182140661	+	9.57684	NA	Intergenic	Intergenic	-109670	NM_001009992	127665	Hs.684328	NM_001009992	HPRD:18361	ZNF648	-	zinc finger protein 648	protein-coding
19-PTNLD28-TUMOR_peak_104039	chr9	81486526	81486793	+	9.57684	NA	Intergenic	Intergenic	273922	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
19-PTNLD28-TUMOR_peak_29841	chr14	34589619	34589789	+	9.57684	NA	Intergenic	LTR16A|LTR|ERVL	-169420	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_97983	chr8	29592759	29592882	+	9.57684	NA	intron (NR_026765, intron 1 of 3)	intron (NR_026765, intron 1 of 3)	12805	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_90827	chr7	1452377	1452728	+	9.57684	NA	Intergenic	CpG	46557	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_85150	chr6	7276300	7276394	+	9.57684	NA	Intergenic	Intergenic	37200	NM_001292008	6745	Hs.114033	NM_003144	HPRD:02924	SSR1	TRAPA	signal sequence receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_101146	chr8	134570345	134570543	+	9.57684	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	13739	NM_173344	6482	Hs.374257	NM_003033	HPRD:06219	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_86863	chr6	33588213	33588421	+	9.57306	NA	promoter-TSS (NM_002224)	promoter-TSS (NM_002224)	-839	NM_002224	3710	Hs.65758	NM_002224	HPRD:00926	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_58838	chr2	232537574	232537905	+	9.57236	NA	Intergenic	Intergenic	-35496	NM_002823	5757	Hs.459927	NM_002823	HPRD:01778	PTMA	TMSA	prothymosin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_58327	chr2	217642509	217642678	+	9.57172	NA	Intergenic	Intergenic	82189	NM_003284	7141	Hs.3017	NM_003284	HPRD:01830	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
19-PTNLD28-TUMOR_peak_51009	chr2	9898223	9898311	+	9.57172	NA	Intergenic	MIRb|SINE|MIR	-85304	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_44391	chr18	6414912	6415348	+	9.57172	NA	promoter-TSS (NM_173464)	promoter-TSS (NM_173464)	-220	NM_173464	91133	Hs.128279	NM_173464	HPRD:08198	L3MBTL4	HsT1031	l(3)mbt-like 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_105416	chr9	114245321	114245648	+	9.57002	NA	intron (NM_001080398, intron 3 of 50)	CpG	1541	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding
19-PTNLD28-TUMOR_peak_92188	chr7	42954024	42954248	+	9.57002	NA	Intergenic	HAL1|LINE|L1	-2447	NM_024054	79020	Hs.698120	NM_024054	HPRD:09861	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_37287	chr16	30908095	30908246	+	9.56939	NA	intron (NM_001142544, intron 1 of 2)	intron (NM_001142544, intron 1 of 2)	242	NM_001330	1489	Hs.483811	NM_001330	HPRD:02699	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
19-PTNLD28-TUMOR_peak_5240	chr1	104239592	104239901	+	9.56939	NA	promoter-TSS (NM_004038).2	promoter-TSS (NM_004038).2	-673	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_94527	chr7	102184029	102184435	+	9.56749	NA	intron (NM_001097615, intron 4 of 8)	intron (NM_001097615, intron 4 of 8)	-7447	NM_001031618	441273	Hs.656428	NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
19-PTNLD28-TUMOR_peak_97497	chr8	21125262	21125554	+	9.56236	NA	Intergenic	L1MEc|LINE|L1	-30342	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_35579	chr16	75939	76055	+	9.56236	NA	Intergenic	MIRb|SINE|MIR	-8878	NR_106918	102466751		NR_106918		MIR6859-1	hsa-mir-6859-1	microRNA 6859-1	ncRNA
19-PTNLD28-TUMOR_peak_670	chr1	10257164	10257433	+	9.56236	NA	Intergenic	Intergenic	-13466	NM_183416	23095	Hs.97858	NM_015074	HPRD:05818	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_11382	chr1	244237926	244238074	+	9.56236	NA	Intergenic	Intergenic	21493	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_80160	chr5	60575691	60575840	+	9.56236	NA	Intergenic	Intergenic	-52335	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_60367	chr20	29556887	29557090	+	9.56236	NA	Intergenic	Intergenic	-54891	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_28042	chr13	44359913	44360429	+	9.56236	NA	intron (NM_001242863, intron 1 of 16)	CpG	945	NM_001242863	55068	Hs.128258	NM_017993	HPRD:07644	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
19-PTNLD28-TUMOR_peak_104369	chr9	90290482	90290712	+	9.56236	NA	intron (NM_001288729, intron 19 of 25)	L2a|LINE|L2	-50377	NM_001912	1514	Hs.731507	NM_001912	HPRD:00293	CTSL	CATL|CTSL1|MEP	cathepsin L	protein-coding
19-PTNLD28-TUMOR_peak_109960	chrX	153601968	153602132	+	9.56183	NA	intron (NM_001110556, intron 1 of 47)	intron (NM_001110556, intron 1 of 47)	956	NM_001110556	2316	Hs.195464	NM_001456	HPRD:02060	FLNA	ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A, alpha	protein-coding
19-PTNLD28-TUMOR_peak_103606	chr9	70094375	70094559	+	9.56152	NA	Intergenic	(CCCTG)n|Simple_repeat|Simple_repeat	84348	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
19-PTNLD28-TUMOR_peak_50032	chr19	51505875	51506087	+	9.55911	NA	3' UTR (NM_012315, exon 5 of 5)	3' UTR (NM_012315, exon 5 of 5)	-1023	NM_001281431	11202	Hs.104570	NM_007196	HPRD:05733	KLK8	HNP|NP|NRPN|PRSS19|TADG14	kallikrein-related peptidase 8	protein-coding
19-PTNLD28-TUMOR_peak_70583	chr3	127541107	127541382	+	9.55824	NA	5' UTR (NM_007283, exon 1 of 8)	5' UTR (NM_007283, exon 1 of 8)	481	NM_007283	11343	Hs.277035	NM_007283	HPRD:17574	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
19-PTNLD28-TUMOR_peak_18302	chr11	45114794	45115038	+	9.55613	NA	promoter-TSS (NR_046338)	promoter-TSS (NR_046338)	-648	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_93555	chr7	76955661	76955766	+	9.55149	NA	intron (NM_017439, intron 22 of 30)	intron (NM_017439, intron 22 of 30)	-88802	NR_110073	101927243	Hs.547753	NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
19-PTNLD28-TUMOR_peak_88715	chr6	90061995	90062146	+	9.55149	NA	intron (NM_016021, intron 1 of 7)	CpG	549	NM_016021	51465	Hs.163776	NM_016021	HPRD:15599	UBE2J1	HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p	ubiquitin-conjugating enzyme E2, J1	protein-coding
19-PTNLD28-TUMOR_peak_84244	chr5	175974920	175975092	+	9.55103	NA	intron (NM_001171976, intron 1 of 31)	Tigger3a|DNA|TcMar-Tigger	-1337	NM_017675	54825	Hs.4205	NM_017675	HPRD:15103	CDHR2	PCDH24|PCLKC	cadherin-related family member 2	protein-coding
19-PTNLD28-TUMOR_peak_49658	chr19	48453374	48453514	+	9.55058	NA	promoter-TSS (NR_024221)	promoter-TSS (NR_024221)	-109	NR_024221	100170226	Hs.467061	NR_024221		SNAR-C3	-	small ILF3/NF90-associated RNA C3	snRNA
19-PTNLD28-TUMOR_peak_505	chr1	8262762	8262894	+	9.54953	NA	Intergenic	L3|LINE|CR1	-115317	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_50086	chr19	52193640	52193815	+	9.54953	NA	intron (NR_108100, intron 1 of 1)	intron (NR_108100, intron 1 of 1)	-2138	NR_029843	407056		NR_029843	miRBase:MI0000746	MIR99B	MIRN99B	microRNA 99b	ncRNA
19-PTNLD28-TUMOR_peak_109950	chrX	153495405	153495702	+	9.54892	NA	intron (NM_000513, intron 4 of 5).2	intron (NM_000513, intron 4 of 5).2	10350	NM_000513	2652	Hs.247787	NM_000513		OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1 (cone pigments), medium-wave-sensitive	protein-coding
19-PTNLD28-TUMOR_peak_108560	chrX	64863550	64863820	+	9.54892	NA	Intergenic	Intergenic	-23826	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_49514	chr19	47142453	47142647	+	9.54825	NA	Intergenic	CpG	-4611	NM_033258	94235	Hs.283961	NM_033258	HPRD:13593	GNG8	-	guanine nucleotide binding protein (G protein), gamma 8	protein-coding
19-PTNLD28-TUMOR_peak_86966	chr6	34759324	34759429	+	9.54825	NA	promoter-TSS (NM_017754)	promoter-TSS (NM_017754)	-418	NM_017754	54887	Hs.700656	NM_017754	HPRD:12838	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_66774	chr3	13869351	13869463	+	9.54825	NA	intron (NM_004625, intron 3 of 3)	intron (NM_004625, intron 3 of 3)	52211	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	wingless-type MMTV integration site family, member 7A	protein-coding
19-PTNLD28-TUMOR_peak_96216	chr7	149193602	149193789	+	9.54825	NA	intron (NM_152557, intron 1 of 6)	intron (NM_152557, intron 1 of 6)	1203	NM_001163474	155061	Hs.24643	NM_152557	HPRD:08099	ZNF746	PARIS	zinc finger protein 746	protein-coding
19-PTNLD28-TUMOR_peak_71190	chr3	138587066	138587184	+	9.54825	NA	Intergenic	L3|LINE|CR1	75737	NR_121649	103344930	Hs.195033	NR_121649		LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
19-PTNLD28-TUMOR_peak_105694	chr9	119099302	119099562	+	9.54628	NA	intron (NM_002581, intron 13 of 21)	intron (NM_002581, intron 13 of 21)	63453	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32120	chr14	102563022	102563154	+	9.54628	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-9576	NM_005348	3320	Hs.525600	NM_005348	HPRD:00777	HSP90AA1	EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90kDa alpha (cytosolic), class A member 1	protein-coding
19-PTNLD28-TUMOR_peak_1166	chr1	17820800	17820964	+	9.54628	NA	Intergenic	Intergenic	-45448	NM_018125	55160	Hs.443460	NM_018125	HPRD:07679	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
19-PTNLD28-TUMOR_peak_62033	chr20	52077492	52077590	+	9.54628	NA	intron (NM_173485, intron 2 of 2)	L1PA3|LINE|L1	-91768	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_24573	chr12	54805211	54805465	+	9.54628	NA	intron (NR_120486, intron 3 of 3)	intron (NR_120486, intron 3 of 3)	7712	NM_002205	3678	Hs.505654	NM_002205	HPRD:00627	ITGA5	CD49e|FNRA|VLA5A	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_84781	chr6	2352422	2352565	+	9.54628	NA	intron (NR_046229, intron 4 of 6)	intron (NR_046229, intron 4 of 6)	106506	NR_046229	100508120	Hs.188825	NR_046229		GMDS-AS1	-	GMDS antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_36835	chr16	23373934	23374144	+	9.54628	NA	intron (NM_000336, intron 4 of 12)	intron (NM_000336, intron 4 of 12)	60448	NM_000336	6338	Hs.414614	NM_000336	HPRD:02861	SCNN1B	BESC1|ENaCb|ENaCbeta|SCNEB	sodium channel, non-voltage-gated 1, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_4707	chr1	88149915	88150185	+	9.54628	NA	Intergenic	Intergenic	-312712	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
19-PTNLD28-TUMOR_peak_55885	chr2	134785714	134785887	+	9.54628	NA	Intergenic	CpG	-98896	NR_037450	100500878		NR_037450	miRBase:MI0016080	MIR3679	-	microRNA 3679	ncRNA
19-PTNLD28-TUMOR_peak_76504	chr4	107134980	107135227	+	9.54628	NA	intron (NM_001163435, intron 19 of 25)	L1PA3|LINE|L1	-101664	NM_001142415	9255	Hs.591680	NM_004757	HPRD:04676	AIMP1	EMAP2|EMAPII|HLD3|SCYE1|p43	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	protein-coding
19-PTNLD28-TUMOR_peak_97108	chr8	10193308	10193514	+	9.54628	NA	intron (NM_001199729, intron 6 of 6)	MIRc|SINE|MIR	-138664	NR_120604	101929191	Hs.595262	NR_120604		LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
19-PTNLD28-TUMOR_peak_68787	chr3	64504339	64504592	+	9.54628	NA	intron (NM_182920, intron 39 of 39)	AluSz|SINE|Alu	-42557	NR_110151	101929335	Hs.476604	NR_110150		ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78310	chr4	185539090	185539348	+	9.54628	NA	Intergenic	MER72|LTR|ERV1	31410	NM_032991	836	Hs.141125	NM_004346	HPRD:02799	CASP3	CPP32|CPP32B|SCA-1	caspase 3, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_21585	chr11	119346075	119346322	+	9.54628	NA	intron (NR_034160, intron 3 of 3)	intron (NR_034160, intron 3 of 3)	-51952	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
19-PTNLD28-TUMOR_peak_23816	chr12	42065503	42065642	+	9.54628	NA	Intergenic	L1PA2|LINE|L1	234031	NM_013377	29951	Hs.380044	NM_013377	HPRD:15116	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
19-PTNLD28-TUMOR_peak_40033	chr17	7826254	7826388	+	9.54628	NA	3' UTR (NM_004732, exon 14 of 14)	3' UTR (NM_004732, exon 14 of 14)	6432	NM_004732	9196	Hs.435074	NM_004732	HPRD:04983	KCNAB3	AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding
19-PTNLD28-TUMOR_peak_74874	chr4	26873315	26873501	+	9.54628	NA	intron (NM_001169117, intron 1 of 12)	FLAM_C|SINE|Alu	11095	NM_020860	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_3775	chr1	57765973	57766168	+	9.54628	NA	intron (NM_021080, intron 3 of 16)	L2a|LINE|L2	-334257	NM_001278544	732	Hs.391835	NM_000066	HPRD:00410	C8B	C82	complement component 8, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_104018	chr9	80764748	80765315	+	9.54628	NA	Intergenic	Intergenic	-85960	NM_001098802	84131	Hs.374421	NM_032171	ENSG00000148019	CEP78	C9orf81|IP63	centrosomal protein 78kDa	protein-coding
19-PTNLD28-TUMOR_peak_105714	chr9	119423402	119423622	+	9.54628	NA	intron (NM_014010, intron 15 of 21)	intron (NM_014010, intron 15 of 21)	25982	NM_198186	23245	Hs.601562	NM_014010	HPRD:12498	ASTN2	bA67K19.1	astrotactin 2	protein-coding
19-PTNLD28-TUMOR_peak_46079	chr18	60173514	60173742	+	9.54628	NA	Intergenic	Intergenic	-17030	NM_017742	54877	Hs.114191	NM_017742	HPRD:11696	ZCCHC2	C18orf49	zinc finger, CCHC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_106128	chr9	129544114	129544286	+	9.54628	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-23085	NM_014007	23099	Hs.355581	NM_014007	HPRD:08346	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19-PTNLD28-TUMOR_peak_3767	chr1	57363428	57363589	+	9.54628	NA	intron (NM_000562, intron 7 of 10)	L2c|LINE|L2	43065	NM_000562	731	Hs.93210	NM_000562	HPRD:00409	C8A	-	complement component 8, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_105069	chr9	104832362	104832590	+	9.54628	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-331614	NM_133445	116443	Hs.654783	NM_133445	HPRD:09443	GRIN3A	GluN3A|NMDAR-L|NR3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	protein-coding
19-PTNLD28-TUMOR_peak_91463	chr7	19922825	19922943	+	9.54628	NA	Intergenic	L1PA3|LINE|L1	-110480	NM_152774	256130	Hs.487670	NM_152774	HPRD:14617	TMEM196	-	transmembrane protein 196	protein-coding
19-PTNLD28-TUMOR_peak_96802	chr7	159020223	159020446	+	9.54628	NA	Intergenic	Intergenic	-82685	NM_003382	7434	Hs.585052	NM_003382	HPRD:03576	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_99904	chr8	103973820	103973924	+	9.54628	NA	Intergenic	Intergenic	-59376	NM_001695	528	Hs.86905	NM_001695	HPRD:04371	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	protein-coding
19-PTNLD28-TUMOR_peak_11677	chr10	3089235	3089383	+	9.54496	NA	Intergenic	Intergenic	-20403	NM_002627	5214	Hs.26010	NM_002627	HPRD:01384	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
19-PTNLD28-TUMOR_peak_53336	chr2	70315305	70315461	+	9.54496	NA	exon (NM_006196, exon 1 of 1)	exon (NM_006196, exon 1 of 1)	798	NM_006196	5093	Hs.2853	NM_006196	HPRD:03128	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_106375	chr9	132379694	132379798	+	9.54314	NA	intron (NM_199350, intron 3 of 6)	L2b|LINE|L2	-2746	NM_001286797	28989	Hs.744027	NM_014064	HPRD:10628	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_55876	chr2	134601910	134602094	+	9.54314	NA	Intergenic	Intergenic	-275971	NM_207363	344148	Hs.537329	NM_207363	HPRD:16936	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_69753	chr3	111636297	111636407	+	9.54314	NA	intron (NM_001134437, intron 4 of 17)	intron (NM_001134437, intron 4 of 17)	57784	NM_001134439	90102	Hs.603252	NM_145753	HPRD:06611	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_102098	chr9	6014792	6014959	+	9.54314	NA	exon (NM_012416, exon 1 of 1)	exon (NM_012416, exon 1 of 1)	765	NM_001243202	26953	Hs.167496	NM_012416	HPRD:17953	RANBP6	-	RAN binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_99244	chr8	75512237	75512740	+	9.54314	NA	intron (NR_033830, intron 1 of 5)	intron (NR_033830, intron 1 of 5)	387	NR_033830	441355	Hs.647162	NR_033830	ENSG00000254349	FLJ39080	-	uncharacterized LOC441355	ncRNA
19-PTNLD28-TUMOR_peak_5508	chr1	111314357	111314493	+	9.54314	NA	Intergenic	Intergenic	-96770	NM_002232	3738	Hs.169948	NM_002232	HPRD:15937	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_7301	chr1	156352880	156352980	+	9.54314	NA	intron (NR_046115, intron 9 of 10)	intron (NR_046115, intron 9 of 10)	13950	NR_046115	57127	Hs.131835	NM_020407	HPRD:06152	RHBG	SLC42A2	Rh family, B glycoprotein (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_91588	chr7	22894436	22894649	+	9.54314	NA	Intergenic	CpG	-1690	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
19-PTNLD28-TUMOR_peak_2966	chr1	43604793	43604945	+	9.54314	NA	Intergenic	LTR13A|LTR|ERVK	-8725	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	family with sequence similarity 183, member A	protein-coding
19-PTNLD28-TUMOR_peak_55425	chr2	121953862	121953987	+	9.54276	NA	Intergenic	Intergenic	88854	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91623	chr7	23571182	23571352	+	9.54276	NA	intron (NM_001282758, intron 1 of 8)	CpG-24104	393	NM_001282758	29896	Hs.445652	NM_013293	HPRD:04096	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_93546	chr7	76911665	76911789	+	9.54276	NA	intron (NM_020879, intron 14 of 18)	intron (NM_020879, intron 14 of 18)	-82577	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_11826	chr10	5671950	5672051	+	9.54276	NA	Intergenic	MER91C|DNA|hAT-Tip100	36558	NR_037164	79754	Hs.445899	NM_024701	HPRD:10667	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
19-PTNLD28-TUMOR_peak_2074	chr1	32226682	32226826	+	9.54276	NA	intron (NM_001294335, intron 1 of 32)	intron (NM_001294335, intron 1 of 32)	-2418	NR_036216	100423028		NR_036216		MIR4254	-	microRNA 4254	ncRNA
19-PTNLD28-TUMOR_peak_16388	chr10	135121613	135121833	+	9.54276	NA	promoter-TSS (NM_145806)	promoter-TSS (NM_145806)	-700	NM_145806	118472	Hs.422113	NM_145806	HPRD:15812	ZNF511	-	zinc finger protein 511	protein-coding
19-PTNLD28-TUMOR_peak_38977	chr16	81547260	81547439	+	9.54007	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	18395	NM_030629	80790	Hs.594095	NM_030629	HPRD:10839	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_32544	chr15	22647064	22647227	+	9.54007	NA	Intergenic	CpG	28096	NR_039733	100616228		NR_039733	miRBase:MI0016874	MIR4509-2	-	microRNA 4509-2	ncRNA
19-PTNLD28-TUMOR_peak_21611	chr11	119932952	119933277	+	9.54007	NA	Intergenic	Intergenic	75749	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_65121	chr22	31498492	31498696	+	9.54007	NA	intron (NM_001207018, intron 19 of 19)	intron (NM_001207018, intron 19 of 19)	4957	NM_080430	140606	Hs.55940	NM_080430	HPRD:15320	SELM	SEPM	selenoprotein M	protein-coding
19-PTNLD28-TUMOR_peak_92916	chr7	65592155	65592367	+	9.54007	NA	intron (NM_001040648, intron 1 of 2)	intron (NM_001040648, intron 1 of 2)	12456	NM_014478	27297	Hs.300684	NM_014478	HPRD:12089	CRCP	CGRP-RCP|CGRPRCP|RCP|RCP9	CGRP receptor component	protein-coding
19-PTNLD28-TUMOR_peak_79476	chr5	35861845	35862040	+	9.54007	NA	intron (NR_120485, intron 2 of 5)	intron (NR_120485, intron 2 of 5)	4965	NR_120485	3575	Hs.591742	NM_002185	HPRD:00893	IL7R	CD127|CDW127|IL-7R-alpha|IL7RA|ILRA	interleukin 7 receptor	protein-coding
19-PTNLD28-TUMOR_peak_103402	chr9	65763374	65763608	+	9.54007	NA	Intergenic	Intergenic	-253881	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_82165	chr5	132759435	132759744	+	9.54007	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	3809	NR_031621	100302134		NR_031621		MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
19-PTNLD28-TUMOR_peak_75044	chr4	40525743	40525869	+	9.54007	NA	intron (NM_001098634, intron 2 of 6)	AluJb|SINE|Alu	-7816	NM_019027	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
19-PTNLD28-TUMOR_peak_80923	chr5	79563246	79563374	+	9.54007	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-11412	NM_178276	256987	Hs.288232	NM_178276	HPRD:12828	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19-PTNLD28-TUMOR_peak_67892	chr3	45838041	45838166	+	9.54007	NA	promoter-TSS (NM_020208)	promoter-TSS (NM_020208)	-68	NM_020208	54716	Hs.413095	NM_020208	HPRD:16128	SLC6A20	SIT1|XT3|Xtrp3	solute carrier family 6 (proline IMINO transporter), member 20	protein-coding
19-PTNLD28-TUMOR_peak_89188	chr6	114318373	114318501	+	9.54007	NA	Intergenic	Intergenic	-26078	NR_033441	3066	Hs.3352	NM_001527	HPRD:05521	HDAC2	HD2|RPD3|YAF1	histone deacetylase 2	protein-coding
19-PTNLD28-TUMOR_peak_83873	chr5	170184370	170184554	+	9.54007	NA	Intergenic	Intergenic	-26261	NM_001291985	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_15164	chr10	100069440	100069551	+	9.54007	NA	Intergenic	Intergenic	-41488	NM_032211	84171	Hs.306814	NM_032211	HPRD:09538	LOXL4	LOXC	lysyl oxidase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_79462	chr5	35136538	35136725	+	9.54007	NA	intron (NM_000949, intron 1 of 9)	MER20|DNA|hAT-Charlie	-18407	NR_037910	5618	Hs.368587	NM_000949	HPRD:01457	PRLR	HPRL|MFAB|hPRLrI	prolactin receptor	protein-coding
19-PTNLD28-TUMOR_peak_37999	chr16	56895238	56895540	+	9.54007	NA	Intergenic	Intergenic	2959	NR_029680	406930		NR_029680	miRBase:MI0000455	MIR138-2	MIRN138-2	microRNA 138-2	ncRNA
19-PTNLD28-TUMOR_peak_96375	chr7	151024854	151025005	+	9.54007	NA	Intergenic	LTR87|LTR|ERVL?	-13918	NM_016118	51667	Hs.647082	NM_016118	HPRD:07450	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin-like proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_91717	chr7	26331500	26331746	+	9.54007	NA	non-coding (NR_037670, exon 1 of 8)	non-coding (NR_037670, exon 1 of 8)	108	NM_013322	29887	Hs.741316	NM_013322	HPRD:15409	SNX10	OPTB8	sorting nexin 10	protein-coding
19-PTNLD28-TUMOR_peak_90941	chr7	2680705	2680856	+	9.53662	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	9177	NM_025250	80727	Hs.440899	NM_025250	HPRD:12333	TTYH3	-	tweety family member 3	protein-coding
19-PTNLD28-TUMOR_peak_32908	chr15	32568530	32568832	+	9.53386	NA	Intergenic	Intergenic	126812	NM_001282493	653125		NM_001282493		GOLGA8K	-	golgin A8 family, member K	protein-coding
19-PTNLD28-TUMOR_peak_59633	chr20	4594450	4594572	+	9.53386	NA	Intergenic	Intergenic	-72286	NM_001080121	5621	Hs.472010	NM_000311	HPRD:01453	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
19-PTNLD28-TUMOR_peak_106697	chr9	138437890	138438107	+	9.53386	NA	promoter-TSS (NM_014582)	promoter-TSS (NM_014582)	13	NM_001293189	29991	Hs.567489	NM_014582	HPRD:01253	OBP2A	LCN13|OBP|OBP2C|OBPIIa|hOBPIIa	odorant binding protein 2A	protein-coding
19-PTNLD28-TUMOR_peak_15612	chr10	112247365	112247646	+	9.53386	NA	Intergenic	Intergenic	-10120	NM_004419	1847	Hs.2128	NM_004419	HPRD:04349	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
19-PTNLD28-TUMOR_peak_103894	chr9	77501987	77502216	+	9.53386	NA	intron (NM_017662, intron 1 of 38)	CpG	162	NM_001177311	140803	Hs.272225	NM_017662	HPRD:06112	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel, subfamily M, member 6	protein-coding
19-PTNLD28-TUMOR_peak_5640	chr1	113795839	113795969	+	9.53386	NA	Intergenic	Intergenic	-47029	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_105996	chr9	126116479	126116622	+	9.53237	NA	Intergenic	Intergenic	-1896	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_2927	chr1	42929711	42929845	+	9.53134	NA	intron (NM_001287511, intron 2 of 2)	intron (NM_001287511, intron 2 of 2)	7613	NM_001077447	79717	Hs.706662	NM_024664	HPRD:07760	PPCS	-	phosphopantothenoylcysteine synthetase	protein-coding
19-PTNLD28-TUMOR_peak_101343	chr8	139969635	139969817	+	9.53134	NA	Intergenic	LTR27B|LTR|ERV1	-43490	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_69698	chr3	110789951	110790082	+	9.52517	NA	promoter-TSS (NM_001243288)	promoter-TSS (NM_001243288)	-590	NM_015480	25945	Hs.293917	NM_015480		PVRL3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRR3	poliovirus receptor-related 3	protein-coding
19-PTNLD28-TUMOR_peak_22524	chr12	3182688	3182800	+	9.52517	NA	Intergenic	Intergenic	-3777	NM_001168320	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_18118	chr11	36532206	36532475	+	9.52517	NA	promoter-TSS (NM_004620)	promoter-TSS (NM_004620)	-477	NM_004620	7189	Hs.444172	NM_004620		TRAF6	MGC:3310|RNF85	TNF receptor-associated factor 6, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_75425	chr4	57301106	57301249	+	9.52517	NA	promoter-TSS (NM_006452)	promoter-TSS (NM_006452)	625	NM_002703	5471	Hs.331420	NM_002703	HPRD:01402	PPAT	ATASE|GPAT|PRAT	phosphoribosyl pyrophosphate amidotransferase	protein-coding
19-PTNLD28-TUMOR_peak_15813	chr10	117585864	117586206	+	9.52413	NA	intron (NM_207303, intron 27 of 28)	LTR27B|LTR|ERV1	445784	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_29049	chr13	110790176	110790352	+	9.52413	NA	Intergenic	Intergenic	169232	NM_001845	1282	Hs.17441	NM_001845	HPRD:00359	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_10783	chr1	230484194	230484348	+	9.52413	NA	intron (NM_001258311, intron 3 of 6)	MIRc|SINE|MIR	77403	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_17334	chr11	13848527	13848686	+	9.52413	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-135578	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_5758	chr1	116219201	116219442	+	9.52413	NA	intron (NM_138959, intron 4 of 7)	intron (NM_138959, intron 4 of 7)	34071	NM_001172412	81839	Hs.515130	NM_138959	HPRD:18279	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
19-PTNLD28-TUMOR_peak_65151	chr22	31886573	31886744	+	9.52413	NA	promoter-TSS (NM_019843)	promoter-TSS (NM_019843)	-784	NM_019843	56478	Hs.517559	NM_019843	HPRD:10456	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
19-PTNLD28-TUMOR_peak_45755	chr18	48253698	48254432	+	9.52413	NA	intron (NM_001292039, intron 4 of 4)	intron (NM_001292039, intron 4 of 4)	92369	NM_001127176	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_46651	chr19	2335226	2335335	+	9.52413	NA	intron (NM_001077238, intron 2 of 14)	intron (NM_001077238, intron 2 of 14)	6651	NM_152988	56928	Hs.744026	NM_152988		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
19-PTNLD28-TUMOR_peak_92503	chr7	49654384	49654558	+	9.52413	NA	Intergenic	LTR13A|LTR|ERVK	-158786	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_58062	chr2	208091926	208092341	+	9.52413	NA	intron (NR_110283, intron 3 of 3)	intron (NR_110283, intron 3 of 3)	26907	NR_110283	101927865	Hs.574609	NR_110283	ENSG00000234902	LOC101927865	-	uncharacterized LOC101927865	ncRNA
19-PTNLD28-TUMOR_peak_86960	chr6	34683550	34683695	+	9.52024	NA	Intergenic	Intergenic	-18995	NM_022758	64771	Hs.643498	NM_022758	HPRD:12837	C6orf106	FP852|dJ391O22.4	chromosome 6 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_52690	chr2	48339249	48339416	+	9.52024	NA	Intergenic	Intergenic	-202463	NM_002158	3344	Hs.468478	NM_002158	HPRD:00882	FOXN2	HTLF	forkhead box N2	protein-coding
19-PTNLD28-TUMOR_peak_74101	chr4	4996972	4997248	+	9.51771	NA	Intergenic	Intergenic	24087	NM_018659	54360	Hs.13872	NM_018659	HPRD:16260	CYTL1	C17|C4orf4	cytokine-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31048	chr14	70041332	70041649	+	9.51771	NA	5' UTR (NM_001271507, exon 1 of 2)	5' UTR (NM_001271507, exon 1 of 2)	110	NM_001271507	56936	Hs.458319	NM_020181		CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
19-PTNLD28-TUMOR_peak_107598	chrX	13750628	13750815	+	9.51771	NA	intron (NM_014563, intron 1 of 4)	MER117|DNA|hAT-Charlie	2033	NM_001128835	6399	Hs.592238	NM_014563	HPRD:02189	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex 2	protein-coding
19-PTNLD28-TUMOR_peak_104218	chr9	86955542	86955739	+	9.51477	NA	promoter-TSS (NM_001199633)	promoter-TSS (NM_001199633)	54	NM_001199633	64078	Hs.535966	NM_022127	HPRD:12200	SLC28A3	CNT3	solute carrier family 28 (concentrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_84101	chr5	173287650	173287861	+	9.51477	NA	Intergenic	Intergenic	-27576	NM_030627	80315	Hs.127126	NM_030627	HPRD:16746	CPEB4	-	cytoplasmic polyadenylation element binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_45201	chr18	32958537	32958707	+	9.51384	NA	Intergenic	Intergenic	-1321	NM_145756	252884	Hs.351005	NM_145756	HPRD:18334	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
19-PTNLD28-TUMOR_peak_41348	chr17	38257463	38257635	+	9.51384	NA	promoter-TSS (NM_021724)	promoter-TSS (NM_021724)	-571	NM_021724	9572	Hs.724	NM_021724	HPRD:03873	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1, group D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_59087	chr2	238395769	238395903	+	9.51384	NA	promoter-TSS (NM_001281473)	promoter-TSS (NM_001281473)	-26	NM_001042467	79083	Hs.102406	NM_024101	HPRD:09409	MLPH	SLAC2-A	melanophilin	protein-coding
19-PTNLD28-TUMOR_peak_32310	chr14	105437041	105437172	+	9.51381	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	7588	NM_138420	113146	Hs.441783	NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
19-PTNLD28-TUMOR_peak_70551	chr3	127307767	127308138	+	9.51111	NA	intron (NR_073377, intron 1 of 9)	intron (NR_073377, intron 1 of 9)	1650	NM_001136053	131601	Hs.6418	NM_016372	HPRD:16318	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein, adipocyte asscociated 1	protein-coding
19-PTNLD28-TUMOR_peak_72863	chr3	185378295	185378428	+	9.51096	NA	intron (NM_001007225, intron 9 of 14)	intron (NM_001007225, intron 9 of 14)	-52679	NR_027317	646600	Hs.647949	NR_027317	ENSG00000163915	C3orf65	-	chromosome 3 open reading frame 65	ncRNA
19-PTNLD28-TUMOR_peak_87192	chr6	37227148	37227277	+	9.51096	NA	intron (NM_017772, intron 1 of 12)	intron (NM_017772, intron 1 of 12)	-1281	NM_001162900	221468	Hs.520101	NM_145316	HPRD:12848	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
19-PTNLD28-TUMOR_peak_18770	chr11	59524017	59524175	+	9.51073	NA	intron (NM_001178040, intron 1 of 9)	MER5A1|DNA|hAT-Charlie	1564	NM_004177	6809	Hs.180711	NM_004177	HPRD:15985	STX3	STX3A	syntaxin 3	protein-coding
19-PTNLD28-TUMOR_peak_23011	chr12	10365892	10366192	+	9.51073	NA	intron (NM_031412, intron 1 of 3)	intron (NM_031412, intron 1 of 3)	553	NM_031412	23710	Hs.524250	NM_031412	HPRD:07601	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA(A) receptor-associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_27875	chr13	38923050	38923188	+	9.50865	NA	promoter-TSS (NR_104584)	promoter-TSS (NR_104584)	-789	NM_001286706	51569	Hs.643655	NM_016617	HPRD:15644	UFM1	BM-002|C13orf20	ubiquitin-fold modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_13643	chr10	53459273	53459411	+	9.50865	NA	promoter-TSS (NM_015235)	promoter-TSS (NM_015235)	13	NM_015235	23283	Hs.591358	NM_015235	HPRD:09900	CSTF2T	CstF-64T	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	protein-coding
19-PTNLD28-TUMOR_peak_52124	chr2	36935679	36935796	+	9.50865	NA	intron (NM_001177971, intron 1 of 13)	intron (NM_001177971, intron 1 of 13)	11904	NM_001177969	5212	Hs.137415	NM_053276	HPRD:18284	VIT	-	vitrin	protein-coding
19-PTNLD28-TUMOR_peak_4334	chr1	71515785	71515946	+	9.50865	NA	intron (NR_038420, intron 2 of 2)	intron (NR_038420, intron 2 of 2)	-2374	NM_198716	5733	Hs.445000	NM_000957	HPRD:08906	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3e|PGE2-R	prostaglandin E receptor 3 (subtype EP3)	protein-coding
19-PTNLD28-TUMOR_peak_57795	chr2	201995456	201995584	+	9.50865	NA	intron (NM_003879, intron 2 of 9)	intron (NM_003879, intron 2 of 9)	-2168	NM_001202518	8837	Hs.390736	NM_003879	HPRD:04671	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD-like apoptosis regulator	protein-coding
19-PTNLD28-TUMOR_peak_91154	chr7	6310714	6310863	+	9.50865	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	1454	NM_004227	9265	Hs.487479	NM_004227	HPRD:05469	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
19-PTNLD28-TUMOR_peak_11927	chr10	7618321	7618834	+	9.50865	NA	exon (NM_030569, exon 10 of 15)	exon (NM_030569, exon 10 of 15)	43059	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_14388	chr10	76969727	76969896	+	9.50865	NA	promoter-TSS (NM_003375)	promoter-TSS (NM_003375)	-101	NM_001184823	7417	Hs.355927	NM_003375	HPRD:01904	VDAC2	POR	voltage-dependent anion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_97527	chr8	21767122	21767333	+	9.50192	NA	exon (NM_003974, exon 5 of 5)	exon (NM_003974, exon 5 of 5)	3978	NM_003974	9046	Hs.71215	NM_003974	HPRD:05411	DOK2	p56DOK|p56dok-2	docking protein 2, 56kDa	protein-coding
19-PTNLD28-TUMOR_peak_106693	chr9	138392412	138392556	+	9.49769	NA	promoter-TSS (NM_001048265)	promoter-TSS (NM_001048265)	7	NR_051968	51116	Hs.382044	NM_016034	HPRD:14783	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
19-PTNLD28-TUMOR_peak_52263	chr2	39665120	39665273	+	9.49769	NA	promoter-TSS (NM_003618)	promoter-TSS (NM_003618)	639	NR_037875	728730	Hs.655344	NR_037875	ENSG00000231312	LOC728730	-	uncharacterized LOC728730	ncRNA
19-PTNLD28-TUMOR_peak_11041	chr1	234952179	234952522	+	9.49769	NA	Intergenic	Intergenic	92561	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_26768	chr12	122147430	122147695	+	9.49519	NA	Intergenic	L2a|LINE|L2	-3096	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
19-PTNLD28-TUMOR_peak_69723	chr3	111395541	111395806	+	9.49519	NA	non-coding (NR_046733, exon 2 of 2)	non-coding (NR_046733, exon 2 of 2)	607	NR_046733	100874115	Hs.626740	NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95344	chr7	130829842	130830206	+	9.49123	NA	intron (NM_001145354, intron 2 of 18)	Plat_L3|LINE|CR1	35169	NM_001145354	4289	Hs.44693	NM_013255	HPRD:16129	MKLN1	TWA2	muskelin 1, intracellular mediator containing kelch motifs	protein-coding
19-PTNLD28-TUMOR_peak_102801	chr9	34628824	34629061	+	9.49123	NA	promoter-TSS (NM_001017363)	promoter-TSS (NM_001017363)	-931	NM_001017363	138715	Hs.534549	NM_001017363	HPRD:18550	ARID3C	-	AT rich interactive domain 3C (BRIGHT-like)	protein-coding
19-PTNLD28-TUMOR_peak_99958	chr8	105655838	105655948	+	9.49123	NA	Intergenic	Intergenic	-54641	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_76280	chr4	93195874	93196201	+	9.49123	NA	Intergenic	HERVH-int|LTR|ERV1	-29513	NM_001286838	2895	Hs.162727	NM_001510	HPRD:06781	GRID2	GluD2	glutamate receptor, ionotropic, delta 2	protein-coding
19-PTNLD28-TUMOR_peak_91860	chr7	30810896	30811473	+	9.49123	NA	intron (NM_032222, intron 1 of 17)	CpG	151	NM_032222	84182	Hs.660192	NM_032222	HPRD:13387	FAM188B	C7orf67	family with sequence similarity 188, member B	protein-coding
19-PTNLD28-TUMOR_peak_59836	chr20	11826075	11826337	+	9.49123	NA	intron (NR_110635, intron 1 of 1)	intron (NR_110635, intron 1 of 1)	25157	NR_110635	728450	Hs.560990	NR_110635		LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
19-PTNLD28-TUMOR_peak_71304	chr3	140582491	140582787	+	9.49123	NA	Intergenic	Intergenic	-78023	NM_018155	55186	Hs.144130	NM_018155	HPRD:07688	SLC25A36	PNC2	solute carrier family 25 (pyrimidine nucleotide carrier ), member 36	protein-coding
19-PTNLD28-TUMOR_peak_47938	chr19	17814713	17814834	+	9.49123	NA	Intergenic	Intergenic	-15530	NM_018174	55201	Hs.66048	NM_018174	HPRD:10461	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule-associated protein 1S	protein-coding
19-PTNLD28-TUMOR_peak_76840	chr4	122159192	122159309	+	9.49123	NA	Intergenic	SVA_B|Other|Other	-10629	NM_001244764	79931	Hs.208206	NM_024873	HPRD:16268	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_23539	chr12	27763437	27763610	+	9.49123	NA	intron (NM_001198915, intron 2 of 26)	intron (NM_001198915, intron 2 of 26)	-85905	NM_001029874	387849	Hs.269836	NM_001029874	ENSG00000174236	REP15	RAB15EP	RAB15 effector protein	protein-coding
19-PTNLD28-TUMOR_peak_64569	chr22	21922436	21922549	+	9.49123	NA	non-coding (NR_046082, exon 1 of 4)	non-coding (NR_046082, exon 1 of 4)	473	NR_046082	7332	Hs.108104	NM_003347	HPRD:04762	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin-conjugating enzyme E2L 3	protein-coding
19-PTNLD28-TUMOR_peak_103530	chr9	68447526	68447708	+	9.49123	NA	intron (NR_033907, intron 2 of 8)	intron (NR_033907, intron 2 of 8)	6758	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58289	chr2	217159085	217159325	+	9.49123	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	77545	NM_020814	57574	Hs.170388	NM_020814	HPRD:16299	MARCH4	MARCH-IV|RNF174	membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_96664	chr7	156309368	156309491	+	9.49123	NA	intron (NR_103858, intron 1 of 1)	intron (NR_103858, intron 1 of 1)	-23756	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	ncRNA
19-PTNLD28-TUMOR_peak_41568	chr17	40925345	40925446	+	9.49123	NA	promoter-TSS (NM_032353)	promoter-TSS (NM_032353)	-59	NM_032353	84313	Hs.500165	NM_032353	HPRD:14396	VPS25	DERP9|EAP20|FAP20	vacuolar protein sorting 25 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70457	chr3	125785590	125785759	+	9.49099	NA	intron (NM_001164475, intron 1 of 9)	LTR22C|LTR|ERVK	-10056	NM_001008487	54946	Hs.573007	NM_017836	HPRD:11580	SLC41A3	SLC41A1-L2	solute carrier family 41, member 3	protein-coding
19-PTNLD28-TUMOR_peak_22979	chr12	9436492	9436744	+	9.49099	NA	intron (NR_024374, intron 1 of 21)	CpG	365	NR_024374	642846	Hs.447869	NR_024374	ENSG00000111788	LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
19-PTNLD28-TUMOR_peak_78673	chr5	1443340	1443576	+	9.49099	NA	intron (NM_001044, intron 1 of 14)	intron (NM_001044, intron 1 of 14)	2085	NM_001044	6531	Hs.406	NM_001044	HPRD:00543	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 (neurotransmitter transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_64137	chr21	48087880	48088307	+	9.49099	NA	Intergenic	CpG	32586	NM_206962	3275	Hs.154163	NM_001535	HPRD:09060	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_24146	chr12	49961821	49962014	+	9.49099	NA	promoter-TSS (NM_001278341)	promoter-TSS (NM_001278341)	11	NM_001278341	10445	Hs.25313	NM_006337	HPRD:11298	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
19-PTNLD28-TUMOR_peak_62035	chr20	52108011	52108244	+	9.49099	NA	3' UTR (NM_001193421, exon 3 of 3)	3' UTR (NM_001193421, exon 3 of 3)	-61182	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_35773	chr16	2122517	2122747	+	9.49099	NA	intron (NM_000548, intron 20 of 41)	intron (NM_000548, intron 20 of 41)	17653	NR_030646	100188847		NR_030646		MIR1225	MIRN1225	microRNA 1225	ncRNA
19-PTNLD28-TUMOR_peak_42206	chr17	48210523	48210640	+	9.49099	NA	TTS (NM_032595)	TTS (NM_032595)	-3335	NM_001257359	201191	Hs.567769	NM_174920	HPRD:14127	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_106731	chr9	139218005	139218227	+	9.49099	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	3663	NR_026964	26102	Hs.561893	NR_026964		DKFZP434A062	-	uncharacterized LOC26102	ncRNA
19-PTNLD28-TUMOR_peak_15685	chr10	114206957	114207365	+	9.49099	NA	promoter-TSS (NM_022494)	promoter-TSS (NM_022494)	405	NM_145206	143187	Hs.194554	NM_145206	HPRD:18290	VTI1A	MMDS3|MVti1|VTI1RP2|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding
19-PTNLD28-TUMOR_peak_64280	chr22	18593036	18593396	+	9.49099	NA	promoter-TSS (NM_001193414)	promoter-TSS (NM_001193414)	-237	NM_018943	51807	Hs.137400	NM_018943	HPRD:05763	TUBA8	TUBAL2	tubulin, alpha 8	protein-coding
19-PTNLD28-TUMOR_peak_99328	chr8	81784818	81785006	+	9.49099	NA	intron (NM_001033723, intron 1 of 8)	intron (NM_001033723, intron 1 of 8)	2104	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
19-PTNLD28-TUMOR_peak_53591	chr2	75005628	75006011	+	9.49099	NA	Intergenic	Intergenic	-53963	NM_000189	3099	Hs.406266	NM_000189	HPRD:03080	HK2	HKII|HXK2	hexokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_80097	chr5	58592684	58592799	+	9.49068	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-20796	NM_001197220	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_48032	chr19	18325722	18325879	+	9.49068	NA	intron (NM_001098818, intron 12 of 14)	intron (NM_001098818, intron 12 of 14)	9503	NM_001098819	5143	Hs.132584	NM_000923	HPRD:02529	PDE4C	DPDE1	phosphodiesterase 4C, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_55274	chr2	119893823	119894058	+	9.49068	NA	Intergenic	Intergenic	22531	NM_182528	165257	Hs.433493	NM_182528	HPRD:12713	C1QL2	C1QTNF10|CTRP10	complement component 1, q subcomponent-like 2	protein-coding
19-PTNLD28-TUMOR_peak_4090	chr1	64970927	64971217	+	9.49068	NA	promoter-TSS (NM_001293274)	promoter-TSS (NM_001293274)	-525	NM_001293274	57685	Hs.443891	NM_020925	HPRD:13874	CACHD1	-	cache domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30191	chr14	50448959	50449457	+	9.49068	NA	intron (NM_001012706, intron 3 of 3)	intron (NM_001012706, intron 3 of 3)	16091	NR_106724	102464828		NR_106724		MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
19-PTNLD28-TUMOR_peak_57670	chr2	198594137	198594267	+	9.49068	NA	intron (NM_001284362, intron 10 of 10)	L1PA4|LINE|L1	24174	NM_138395	92935	Hs.744330	NM_138395	HPRD:14363	MARS2	MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_74628	chr4	15938262	15938359	+	9.49068	NA	intron (NM_005130, intron 2 of 2)	intron (NM_005130, intron 2 of 2)	2053	NM_005130	9982	Hs.1690	NM_005130	HPRD:06371	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_106568	chr9	136063775	136063939	+	9.49068	NA	Intergenic	Intergenic	20780	NR_110242	29989	Hs.449629	NM_014581	HPRD:05209	OBP2B	LCN14|OBPIIb	odorant binding protein 2B	protein-coding
19-PTNLD28-TUMOR_peak_57759	chr2	201558918	201559121	+	9.49068	NA	Intergenic	Intergenic	-1427	NR_001557	344454	Hs.148269	NR_001557		AOX2P	AOH2|AOX2	aldehyde oxidase 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80647	chr5	73088711	73088813	+	9.49068	NA	intron (NM_001080479, intron 7 of 36)	intron (NM_001080479, intron 7 of 36)	-20581	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_82967	chr5	145570512	145570652	+	9.49068	NA	Intergenic	Intergenic	-8288	NM_020117	51520	Hs.432674	NM_020117	HPRD:01042	LARS	HSPC192|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl	leucyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_56589	chr2	160867395	160867542	+	9.49068	NA	intron (NM_001007267, intron 10 of 26)	intron (NM_001007267, intron 10 of 26)	51658	NM_001195641	22925	Hs.410477	NM_007366	HPRD:09222	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1, 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_71382	chr3	141738772	141739137	+	9.49068	NA	intron (NM_001178139, intron 3 of 12)	intron (NM_001178139, intron 3 of 12)	8553	NM_001178142	7029	Hs.379018	NM_006286	HPRD:03696	TFDP2	DP2	transcription factor Dp-2 (E2F dimerization partner 2)	protein-coding
19-PTNLD28-TUMOR_peak_94175	chr7	98453826	98453957	+	9.49068	NA	intron (NM_152913, intron 3 of 7)	intron (NM_152913, intron 3 of 7)	13782	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_102220	chr9	14199240	14199405	+	9.49068	NA	intron (NM_005596, intron 2 of 8)	intron (NM_005596, intron 2 of 8)	-18521	NM_001282787	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_96020	chr7	142898149	142898310	+	9.49068	NA	Intergenic	AluSx|SINE|Alu	17717	NM_176881	259285	Hs.553660	NM_176881	HPRD:18149	TAS2R39	T2R39|T2R57	taste receptor, type 2, member 39	protein-coding
19-PTNLD28-TUMOR_peak_49232	chr19	42800319	42800562	+	9.49068	NA	TTS (NM_001145939)	TTS (NM_001145939)	-5844	NM_199285	284338	Hs.585901	NM_199285	HPRD:14703	PRR19	-	proline rich 19	protein-coding
19-PTNLD28-TUMOR_peak_48913	chr19	39055910	39056224	+	9.49068	NA	exon (NM_001042723, exon 90 of 105)	exon (NM_001042723, exon 90 of 105)	52608	NM_007181	11184	Hs.95424	NM_007181	HPRD:03583	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_15720	chr10	115323216	115323448	+	9.49068	NA	intron (NM_004132, intron 1 of 12)	intron (NM_004132, intron 1 of 12)	10554	NM_004132	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_21108	chr11	111293844	111293972	+	9.49068	NA	Intergenic	Intergenic	-4997	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
19-PTNLD28-TUMOR_peak_40584	chr17	19669942	19670085	+	9.49068	NA	Intergenic	Intergenic	-18267	NM_000691	218	Hs.531682	NM_000691	HPRD:00004	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_91852	chr7	30596487	30596814	+	9.49068	NA	intron (NR_038889, intron 5 of 6)	intron (NR_038889, intron 5 of 6)	20745	NR_038889	401320	Hs.561708	NR_038889	ENSG00000196295	LOC401320	-	uncharacterized LOC401320	ncRNA
19-PTNLD28-TUMOR_peak_11485	chr1	246229960	246230161	+	9.49068	NA	intron (NM_022743, intron 5 of 11)	intron (NM_022743, intron 5 of 11)	350654	NM_022743	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_99817	chr8	102670175	102670375	+	9.49068	NA	intron (NM_024915, intron 14 of 15)	intron (NM_024915, intron 14 of 15)	133164	NM_032041	83988	Hs.492427	NM_032041	HPRD:09466	NCALD	-	neurocalcin delta	protein-coding
19-PTNLD28-TUMOR_peak_46720	chr19	3326922	3327180	+	9.49068	NA	Intergenic	Intergenic	-32510	NM_205843	4782	Hs.170131	NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I/C (CCAAT-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_34689	chr15	78368220	78368442	+	9.49068	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	1663	NM_144572	23102	Hs.567426	NM_015079	HPRD:08310	TBC1D2B	-	TBC1 domain family, member 2B	protein-coding
19-PTNLD28-TUMOR_peak_12578	chr10	27738016	27738178	+	9.49068	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-34800	NM_001034842	374308	Hs.631832	NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_103584	chr9	69728865	69729054	+	9.48884	NA	Intergenic	(CCCTG)n|Simple_repeat|Simple_repeat	28825	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_5708	chr1	115627571	115628010	+	9.48652	NA	intron (NM_005725, intron 1 of 7)	intron (NM_005725, intron 1 of 7)	4331	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_79138	chr5	16952300	16952407	+	9.48652	NA	Intergenic	AluY|SINE|Alu	-15968	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_73010	chr3	187284839	187285110	+	9.48652	NA	Intergenic	Intergenic	103227	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_45365	chr18	39919370	39919500	+	9.48652	NA	intron (NR_046456, intron 5 of 7)	intron (NR_046456, intron 5 of 7)	152802	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_10040	chr1	214725213	214725377	+	9.48652	NA	promoter-TSS (NM_005401)	promoter-TSS (NM_005401)	-271	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_24444	chr12	53455600	53455757	+	9.48652	NA	exon (NM_198316, exon 22 of 29)	exon (NM_198316, exon 22 of 29)	4950	NR_106815	102466193		NR_106815		MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
19-PTNLD28-TUMOR_peak_769	chr1	11705876	11705980	+	9.48652	NA	Intergenic	Intergenic	-8504	NM_183412	93611	Hs.556006	NM_033182	HPRD:16445	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
19-PTNLD28-TUMOR_peak_95569	chr7	135363958	135364148	+	9.48652	NA	Intergenic	Intergenic	16832	NM_001130929	647087	Hs.200022	NM_001130929		C7orf73	PL-5283	chromosome 7 open reading frame 73	protein-coding
19-PTNLD28-TUMOR_peak_51492	chr2	21022568	21022976	+	9.48652	NA	intron (NM_001282723, intron 1 of 5)	CpG	118	NM_001282723	60526	Hs.187823	NM_021925	HPRD:07113	C2orf43	-	chromosome 2 open reading frame 43	protein-coding
19-PTNLD28-TUMOR_peak_4008	chr1	62890162	62890488	+	9.48652	NA	Intergenic	LTR8A|LTR|ERV1	-11650	NM_001017415	7398	Hs.35086	NM_003368	HPRD:04593	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_90515	chr6	167364994	167365120	+	9.48624	NA	intron (NM_003730, intron 2 of 8)	LTR13|LTR|ERVK	5020	NM_003730	8635	Hs.529989	NM_003730	HPRD:10197	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
19-PTNLD28-TUMOR_peak_87123	chr6	36692490	36692608	+	9.48624	NA	intron (NM_001257357, intron 9 of 13)	intron (NM_001257357, intron 9 of 13)	26921	NM_001257357	401258	Hs.485258	NM_207498		RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_81262	chr5	96212098	96212232	+	9.48624	NA	5' UTR (NM_022350, exon 1 of 19)	5' UTR (NM_022350, exon 1 of 19)	521	NM_001130140	64167	Hs.482910	NM_022350	HPRD:14306	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_50217	chr19	54040810	54040967	+	9.48624	NA	promoter-TSS (NM_001079906)	promoter-TSS (NM_001079906)	-445	NM_001079906	55422	Hs.185674	NM_018555	HPRD:05827	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
19-PTNLD28-TUMOR_peak_1438	chr1	23494200	23494685	+	9.48624	NA	intron (NM_033631, intron 1 of 4)	GC_rich|Low_complexity|Low_complexity	909	NM_001142546	7798	Hs.257900	NM_033631	HPRD:03250	LUZP1	LUZP	leucine zipper protein 1	protein-coding
19-PTNLD28-TUMOR_peak_7605	chr1	160377704	160377824	+	9.48544	NA	intron (NM_020335, intron 1 of 7)	intron (NM_020335, intron 1 of 7)	7400	NM_020335	57216	Hs.99477	NM_020335	HPRD:02758	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
19-PTNLD28-TUMOR_peak_63967	chr21	45940141	45940722	+	9.48544	NA	intron (NM_144991, intron 9 of 11)	intron (NM_144991, intron 9 of 11)	3333	NR_026547	114043	Hs.592163	NM_153204		C21orf90	-	chromosome 21 open reading frame 90	ncRNA
19-PTNLD28-TUMOR_peak_19246	chr11	65101547	65101827	+	9.48544	NA	intron (NM_006268, intron 1 of 10)	CpG	462	NM_006268	5977	Hs.13495	NM_006268	HPRD:03394	DPF2	REQ|UBID4|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding
19-PTNLD28-TUMOR_peak_71012	chr3	134386175	134386476	+	9.48544	NA	Intergenic	LTR16D|LTR|ERVL	-16461	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_1845	chr1	28586728	28586939	+	9.47925	NA	intron (NM_031459, intron 1 of 9)	CpG	870	NM_031459	83667	Hs.469543	NM_031459	HPRD:06378	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
19-PTNLD28-TUMOR_peak_48421	chr19	30178181	30178349	+	9.47925	NA	Intergenic	L2a|LINE|L2	21938	NM_024310	79156	Hs.466383	NM_024310	HPRD:15146	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_82111	chr5	131782521	131782660	+	9.47736	NA	intron (NR_045116, intron 2 of 3)	intron (NR_045116, intron 2 of 3)	36125	NR_045116	441108	Hs.658288	NM_001013717	HPRD:18460	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
19-PTNLD28-TUMOR_peak_103070	chr9	38622366	38622479	+	9.47736	NA	non-coding (NR_027294, exon 2 of 2)	non-coding (NR_027294, exon 2 of 2)	1337	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_26132	chr12	108754378	108754566	+	9.47449	NA	Intergenic	Intergenic	-21378	NM_001142343	1240	Hs.197143	NM_004072	HPRD:03829	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemokine-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_79979	chr5	55764159	55764325	+	9.47449	NA	intron (NR_104664, intron 1 of 4)	intron (NR_104664, intron 1 of 4)	13354	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_27548	chr13	26796397	26796603	+	9.47449	NA	promoter-TSS (NM_005977)	promoter-TSS (NM_005977)	8	NM_005977	6049	Hs.136885	NM_005977	HPRD:05027	RNF6	-	ring finger protein (C3H2C3 type) 6	protein-coding
19-PTNLD28-TUMOR_peak_18048	chr11	35164243	35164421	+	9.47449	NA	intron (NM_001202555, intron 1 of 9)	intron (NM_001202555, intron 1 of 9)	3915	NM_001202556	960	Hs.502328	NM_000610	HPRD:00115	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
19-PTNLD28-TUMOR_peak_19697	chr11	69703448	69703570	+	9.47449	NA	Intergenic	Intergenic	-69317	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_97695	chr8	23539853	23540022	+	9.47449	NA	intron (NM_001256339, intron 2 of 2)	CpG	465	NM_001256339	4824	Hs.55999	NM_006167	HPRD:03620	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_53189	chr2	66661348	66661564	+	9.47251	NA	promoter-TSS (NR_046438)	promoter-TSS (NR_046438)	-854	NR_046438	730198	Hs.526753	NR_046438		MEIS1-AS3	-	MEIS1 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_30962	chr14	69095097	69095226	+	9.47160	NA	Intergenic	CpG	165470	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1421	chr1	23072617	23072833	+	9.47160	NA	intron (NM_004442, intron 1 of 15)	L2b|LINE|L2	26715	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
19-PTNLD28-TUMOR_peak_62070	chr20	52369611	52369926	+	9.47160	NA	Intergenic	MIRc|SINE|MIR	122480	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_86874	chr6	33659974	33660108	+	9.47160	NA	intron (NM_002224, intron 54 of 57)	intron (NM_002224, intron 54 of 57)	19487	NM_032340	84300	Hs.745020	NM_032340	HPRD:12847	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_13568	chr10	50809195	50809387	+	9.47160	NA	Intergenic	Intergenic	-7850	NM_020984	1103	Hs.302002	NM_020549	HPRD:07510	CHAT	CHOACTASE|CMS1A|CMS1A2	choline O-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_34600	chr15	76027289	76027569	+	9.47160	NA	intron (NR_024595, intron 3 of 4)	LTR13A|LTR|ERVK	4989	NR_024595	100128285	Hs.604066	NR_024595	ENSG00000246877	DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	DNM1 pseudogene 35	pseudo
19-PTNLD28-TUMOR_peak_15587	chr10	111969833	111969958	+	9.47106	NA	promoter-TSS (NM_001008541)	promoter-TSS (NM_001008541)	-94	NM_001008541	4601	Hs.602078	NM_005962	HPRD:02486	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
19-PTNLD28-TUMOR_peak_97318	chr8	17103856	17104160	+	9.47106	NA	promoter-TSS (NM_001145152)	promoter-TSS (NM_001145152)	379	NM_013354	29883	Hs.645009	NM_013354	ENSG00000198791	CNOT7	CAF1|Caf1a|hCAF-1	CCR4-NOT transcription complex, subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_117	chr1	1174942	1175178	+	9.47106	NA	Intergenic	Intergenic	7042	NM_001014980	388581	Hs.197613	NM_001014980	ENSG00000184163	FAM132A	C1QDC2|C1QTNF12|CTRP12	family with sequence similarity 132, member A	protein-coding
19-PTNLD28-TUMOR_peak_9160	chr1	200867528	200867660	+	9.46250	NA	intron (NM_018265, intron 2 of 9)	intron (NM_018265, intron 2 of 9)	3645	NM_001142569	55765	Hs.518997	NM_018265	HPRD:07712	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_75786	chr4	77624311	77624478	+	9.45629	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	129673	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_3305	chr1	47800122	47800438	+	9.45610	NA	intron (NM_001136140, intron 1 of 4)	CpG	811	NR_046395	51727	Hs.731647	NM_016308	HPRD:18258	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine monophosphate (UMP-CMP) kinase 1, cytosolic	protein-coding
19-PTNLD28-TUMOR_peak_39827	chr17	4642901	4643321	+	9.45594	NA	promoter-TSS (NM_001267822)	promoter-TSS (NM_001267822)	112	NM_001100812	58191	Hs.745037	NM_022059	HPRD:16103	CXCL16	CXCLG16|SR-PSOX|SRPSOX	chemokine (C-X-C motif) ligand 16	protein-coding
19-PTNLD28-TUMOR_peak_41534	chr17	40669672	40669795	+	9.45594	NA	intron (NM_001130021, intron 21 of 21)	intron (NM_001130021, intron 21 of 21)	3527	NR_049808	100847046		NR_049808		MIR5010	-	microRNA 5010	ncRNA
19-PTNLD28-TUMOR_peak_106980	chrUn_gl000211	48599	48702	+	9.45510	NA	non-coding (NR_033856, exon 1 of 7)	non-coding (NR_033856, exon 1 of 7)	147	NR_033856	644316	Hs.632789	NR_033856		FLJ43315	-	asparagine synthetase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74326	chr4	8216846	8217020	+	9.45510	NA	intron (NM_018986, intron 5 of 17)	intron (NM_018986, intron 5 of 17)	15873	NM_018986	54436	Hs.479116	NM_018986	HPRD:11556	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_24429	chr12	53365887	53366036	+	9.45304	NA	Intergenic	MIR3|SINE|MIR	-22311	NM_001256293	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_21384	chr11	116567260	116567481	+	9.44945	NA	Intergenic	Intergenic	76344	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_64080	chr21	47205786	47205883	+	9.44858	NA	Intergenic	SVA_D|Other|Other	50499	NR_038876	100129027	Hs.689591	NR_038876	ENSG00000205424	LOC100129027	-	uncharacterized LOC100129027	ncRNA
19-PTNLD28-TUMOR_peak_14546	chr10	80909805	80910103	+	9.44858	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	81162	NM_020338	57178	Hs.193118	NM_020338	HPRD:12115	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger, MIZ-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59667	chr20	5510433	5510533	+	9.44858	NA	Intergenic	Intergenic	-19835	NR_109860	101929207	Hs.516871	NR_109860		LOC101929207	-	uncharacterized LOC101929207	ncRNA
19-PTNLD28-TUMOR_peak_32709	chr15	28450887	28451046	+	9.44858	NA	intron (NM_004667, intron 45 of 92)	intron (NM_004667, intron 45 of 92)	-106508	NM_000275	4948	Hs.654411	NM_000275	HPRD:01945	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
19-PTNLD28-TUMOR_peak_41632	chr17	41602655	41602788	+	9.44858	NA	Intergenic	LTR89|LTR|ERVL?	5082	NM_001261439	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_103869	chr9	75794455	75794878	+	9.44858	NA	Intergenic	Intergenic	27885	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_46450	chr18	77906101	77906408	+	9.44858	NA	intron (NR_028340, intron 1 of 2)	intron (NR_028340, intron 1 of 2)	447	NR_028340	100130522	Hs.352602	NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90290	chr6	158958086	158958327	+	9.44858	NA	intron (NM_020823, intron 1 of 16)	CpG	738	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
19-PTNLD28-TUMOR_peak_106028	chr9	126985800	126985986	+	9.44858	NA	Intergenic	Intergenic	-33992	NM_001166167	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_93768	chr7	85969735	85970117	+	9.44858	NA	Intergenic	L1PA2|LINE|L1	-303304	NM_000840	2913	Hs.590575	NM_000840	HPRD:03070	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate receptor, metabotropic 3	protein-coding
19-PTNLD28-TUMOR_peak_97074	chr8	8860556	8860682	+	9.44858	NA	exon (NM_153332, exon 1 of 7)	exon (NM_153332, exon 1 of 7)	305	NM_153332	90459	Hs.20000	NM_153332	HPRD:11784	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_75029	chr4	40307394	40307648	+	9.44858	NA	Intergenic	Intergenic	-1681	NR_121641	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_3639	chr1	54837037	54837277	+	9.44858	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	34911	NM_001009955	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_86365	chr6	28949804	28950001	+	9.44842	NA	Intergenic	Intergenic	23135	NM_001010877	282890	Hs.148218	NM_001010877	HPRD:18325	ZNF311	zf31	zinc finger protein 311	protein-coding
19-PTNLD28-TUMOR_peak_3076	chr1	44579603	44579782	+	9.44818	NA	Intergenic	Intergenic	-4830	NM_173484	128209	Hs.567674	NM_173484	HPRD:08272	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
19-PTNLD28-TUMOR_peak_13665	chr10	54214981	54215160	+	9.44818	NA	promoter-TSS (NR_120642)	promoter-TSS (NR_120642)	-38	NR_120642	101928687	Hs.380362	NR_120641	ENSG00000231131	LINC01468	lnc-MBL2-4	long intergenic non-protein coding RNA 1468	ncRNA
19-PTNLD28-TUMOR_peak_32071	chr14	100799213	100799494	+	9.44818	NA	TTS (NM_213646)	TTS (NM_213646)	9674	NM_207117	283600	Hs.108268	NM_207117	HPRD:16620	SLC25A47	C14orf68|HDMCP	solute carrier family 25, member 47	protein-coding
19-PTNLD28-TUMOR_peak_13963	chr10	69609877	69609981	+	9.44818	NA	Intergenic	Intergenic	-11992	NM_021800	56521	Hs.260720	NM_021800	HPRD:06930	DNAJC12	JDP1	DnaJ (Hsp40) homolog, subfamily C, member 12	protein-coding
19-PTNLD28-TUMOR_peak_51791	chr2	28029286	28029470	+	9.44818	NA	intron (NM_001287580, intron 8 of 8)	MIRc|SINE|MIR	34794	NM_145330	9553	Hs.515879	NM_004891	HPRD:14753	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L	mitochondrial ribosomal protein L33	protein-coding
19-PTNLD28-TUMOR_peak_47571	chr19	13983550	13983658	+	9.44818	NA	Intergenic	CpG	-1909	NR_029613	406957		NR_029613	miRBase:MI0000271	MIR181C	MIRN181C|mir-181c	microRNA 181c	ncRNA
19-PTNLD28-TUMOR_peak_12635	chr10	29281043	29281205	+	9.44818	NA	Intergenic	L2c|LINE|L2	145787	NM_001278522	283080		NM_001278522	ENSG00000204365	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
19-PTNLD28-TUMOR_peak_67407	chr3	32279816	32280573	+	9.44818	NA	promoter-TSS (NM_178868)	promoter-TSS (NM_178868)	23	NM_178868	152189	Hs.154986	NM_178868	HPRD:06989	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF-like MARVEL transmembrane domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_107733	chrX	19906357	19906563	+	9.44818	NA	promoter-TSS (NM_031892)	promoter-TSS (NM_031892)	-716	NM_031892	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61674	chr20	48002131	48002271	+	9.44818	NA	intron (NM_004975, intron 1 of 1)	MLT1J|LTR|ERVL-MaLR	96980	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	potassium voltage-gated channel, Shab-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_107734	chrX	19906688	19906837	+	9.44818	NA	Intergenic	Intergenic	-1018	NM_031892	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47596	chr19	14184205	14184667	+	9.44772	NA	TTS (NR_106715)	TTS (NR_106715)	263	NR_106715	102466515		NR_106715		MIR1199	hsa-mir-1199	microRNA 1199	ncRNA
19-PTNLD28-TUMOR_peak_47319	chr19	11430469	11430604	+	9.44637	NA	intron (NM_012466, intron 6 of 6)	AluY|SINE|Alu	19808	NM_004283	9545	Hs.744916	NM_004283	HPRD:05070	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_69782	chr3	111853636	111853935	+	9.44637	NA	Intergenic	L1ME1|LINE|L1	-1633	NM_001190259	257144	Hs.49614	NM_152785	HPRD:09695	GCSAM	GCAT2|GCET2|HGAL	germinal center-associated, signaling and motility	protein-coding
19-PTNLD28-TUMOR_peak_26682	chr12	120972109	120972360	+	9.44637	NA	5' UTR (NM_014868, exon 1 of 17)	5' UTR (NM_014868, exon 1 of 17)	102	NM_014868	9921	Hs.442798	NM_014868	HPRD:11496	RNF10	RIE2	ring finger protein 10	protein-coding
19-PTNLD28-TUMOR_peak_53837	chr2	85977749	85977857	+	9.44637	NA	Intergenic	Intergenic	-3106	NM_032827	84913	Hs.135569	NM_032827		ATOH8	HATH6|bHLHa21	atonal homolog 8 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_96784	chr7	158769821	158769980	+	9.44637	NA	Intergenic	L1MC1|LINE|L1	-31145	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
19-PTNLD28-TUMOR_peak_69774	chr3	111806143	111806258	+	9.44637	NA	intron (NM_001171747, intron 1 of 3)	intron (NM_001171747, intron 1 of 3)	1018	NM_024616	79669	Hs.434247	NM_024616	HPRD:08018	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_104203	chr9	86594491	86594597	+	9.44516	NA	intron (NM_031262, intron 1 of 16)	CpG	640	NM_031263	3190	Hs.522257	NM_002140	HPRD:02834	HNRNPK	CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
19-PTNLD28-TUMOR_peak_87201	chr6	37401332	37401775	+	9.44516	NA	intron (NM_015050, intron 1 of 23)	intron (NM_015050, intron 1 of 23)	646	NM_015050	23070	Hs.520102	NM_015050	HPRD:08305	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_61472	chr20	45608307	45608583	+	9.44367	NA	intron (NM_005244, intron 1 of 15)	intron (NM_005244, intron 1 of 15)	85182	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_44621	chr18	11994426	11994530	+	9.44367	NA	intron (NM_014214, intron 1 of 7)	intron (NM_014214, intron 1 of 7)	13051	NM_014214	3613	Hs.743311	NM_014214	HPRD:09329	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_65410	chr22	37882411	37882728	+	9.44367	NA	promoter-TSS (NM_001166343)	promoter-TSS (NM_001166343)	-91	NM_002405	4242	Hs.517603	NM_002405	HPRD:03988	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_106440	chr9	133382392	133382735	+	9.44367	NA	Intergenic	SVA_D|Other|Other	62469	NM_000050	445	Hs.160786	NM_000050	HPRD:04590	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_106466	chr9	133956101	133956246	+	9.44367	NA	intron (NM_006059, intron 23 of 27)	intron (NM_006059, intron 23 of 27)	-15690	NR_033701	83543	Hs.4944	NM_031426	HPRD:12967	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_44279	chr18	2570789	2571116	+	9.44367	NA	promoter-TSS (NM_006101)	promoter-TSS (NM_006101)	537	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_88730	chr6	90237463	90237610	+	9.44367	NA	intron (NM_001242813, intron 1 of 14)	AluJr4|SINE|Alu	-34501	NM_001242811	22881	Hs.702213	NM_014942	HPRD:09798	ANKRD6	-	ankyrin repeat domain 6	protein-coding
19-PTNLD28-TUMOR_peak_95908	chr7	141589246	141589401	+	9.44367	NA	Intergenic	Intergenic	-29353	NM_001001656	130075	Hs.690171	NM_001001656	HPRD:17797	OR9A4	-	olfactory receptor, family 9, subfamily A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_77767	chr4	156588913	156589221	+	9.44367	NA	5' UTR (NM_001130684, exon 1 of 9)	5' UTR (NM_001130684, exon 1 of 9)	252	NM_001130684	2982	Hs.24258	NM_000856	HPRD:00768	GUCY1A3	GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1|MYMY6	guanylate cyclase 1, soluble, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_51993	chr2	31393049	31393182	+	9.44367	NA	Intergenic	Intergenic	-31523	NM_001253826	79623	Hs.468058	NM_024572	HPRD:12194	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
19-PTNLD28-TUMOR_peak_8670	chr1	182144514	182144669	+	9.44367	NA	Intergenic	Intergenic	-113744	NM_001009992	127665	Hs.684328	NM_001009992	HPRD:18361	ZNF648	-	zinc finger protein 648	protein-coding
19-PTNLD28-TUMOR_peak_95044	chr7	126931018	126931238	+	9.44367	NA	Intergenic	Intergenic	-38700	NM_001127323	2918	Hs.449625	NM_000845	HPRD:03071	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate receptor, metabotropic 8	protein-coding
19-PTNLD28-TUMOR_peak_3634	chr1	54753019	54753212	+	9.44367	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	50999	NR_103541	619518	Hs.591438	NM_001034847		SSBP3-AS1	C1orf191|MST128	SSBP3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16321	chr10	134202465	134202686	+	9.44367	NA	Intergenic	Intergenic	-8127	NM_138499	170394	Hs.527751	NM_138499	HPRD:11465	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_57488	chr2	191724453	191724582	+	9.44367	NA	Intergenic	MER5A|DNA|hAT-Charlie	-21030	NM_001256310	2744	Hs.116448	NM_014905	HPRD:00700	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
19-PTNLD28-TUMOR_peak_15558	chr10	110983457	110983599	+	9.44367	NA	intron (NR_046928, intron 2 of 2)	L1PA2|LINE|L1	53113	NR_046928	100873762		NR_046928		RNU6-53P	RNU6-53	RNA, U6 small nuclear 53, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_72643	chr3	181919639	181919785	+	9.44367	NA	Intergenic	Intergenic	249560	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_21268	chr11	113765278	113765571	+	9.44367	NA	Intergenic	LTR16A2|LTR|ERVL	-10094	NM_006028	9177	Hs.241377	NM_006028	HPRD:06875	HTR3B	5-HT3B	5-hydroxytryptamine (serotonin) receptor 3B, ionotropic	protein-coding
19-PTNLD28-TUMOR_peak_48980	chr19	39630061	39630231	+	9.44367	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	13726	NM_001014832	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_109735	chrX	149381456	149381747	+	9.44367	NA	Intergenic	Intergenic	-14638	NR_031748	100313839		NR_031748	miRBase:MI0010633	MIR2114	-	microRNA 2114	ncRNA
19-PTNLD28-TUMOR_peak_23894	chr12	45342585	45342746	+	9.44367	NA	Intergenic	Intergenic	-34954	NM_001145110	4753	Hs.505326	NM_006159	HPRD:11891	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_60653	chr20	33158708	33158830	+	9.44367	NA	intron (NM_080476, intron 11 of 11)	intron (NM_080476, intron 11 of 11)	12268	NM_032514	84557	Hs.632273	NM_032514	HPRD:03144	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_45805	chr18	51657057	51657429	+	9.44367	NA	Intergenic	Intergenic	91539	NR_002970	677819	Hs.655869	NR_002970		SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
19-PTNLD28-TUMOR_peak_95370	chr7	131271038	131271164	+	9.44367	NA	Intergenic	Intergenic	-29725	NM_001018111	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_61962	chr20	50745149	50745288	+	9.44367	NA	intron (NM_199427, intron 5 of 8)	intron (NM_199427, intron 5 of 8)	63306	NM_199426	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_18300	chr11	45111482	45111614	+	9.44091	NA	Intergenic	Intergenic	-4016	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_63706	chr21	43237707	43237839	+	9.44049	NA	intron (NR_104260, intron 18 of 25)	intron (NR_104260, intron 18 of 25)	45638	NR_104260	63977	Hs.473893	NM_022115	HPRD:11458	PRDM15	C21orf83|PFM15|ZNF298	PR domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_34551	chr15	75463394	75463561	+	9.44049	NA	Intergenic	LTR16D2|LTR|ERVL	-30744	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_83896	chr5	170878080	170878209	+	9.44049	NA	intron (NM_003862, intron 4 of 4)	CpG	31477	NM_003862	8817	Hs.87191	NM_003862	HPRD:04766	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
19-PTNLD28-TUMOR_peak_36189	chr16	9688875	9689102	+	9.44049	NA	Intergenic	Intergenic	-30740	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_107050	chrUn_gl000216	142716	142921	+	9.44023	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
19-PTNLD28-TUMOR_peak_69206	chr3	80946239	80946397	+	9.43559	NA	Intergenic	L1PA2|LINE|L1	864632	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_7397	chr1	157141874	157142024	+	9.43559	NA	Intergenic	Intergenic	-33566	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_65116	chr22	31457207	31457406	+	9.43559	NA	Intergenic	Intergenic	-19976	NM_006932	6525	Hs.149098	NM_006932	HPRD:03675	SMTN	-	smoothelin	protein-coding
19-PTNLD28-TUMOR_peak_79102	chr5	16508987	16509260	+	9.43559	NA	promoter-TSS (NM_019000)	promoter-TSS (NM_019000)	-16	NM_019000	54463	Hs.481704	NM_019000	HPRD:07879	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
19-PTNLD28-TUMOR_peak_57836	chr2	202755280	202755671	+	9.43559	NA	intron (NM_001261435, intron 12 of 13)	intron (NM_001261435, intron 12 of 13)	84173	NM_001261436	65061	Hs.348711	NM_139158	HPRD:12449	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin-dependent kinase 15	protein-coding
19-PTNLD28-TUMOR_peak_94596	chr7	103181193	103181333	+	9.43559	NA	intron (NM_005045, intron 43 of 64)	intron (NM_005045, intron 43 of 64)	-94639	NM_206885	375611	Hs.585146	NM_198999	HPRD:09224	SLC26A5	DFNB61|PRES	solute carrier family 26 (anion exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_565	chr1	9104356	9104666	+	9.43559	NA	intron (NM_003039, intron 4 of 11)	intron (NM_003039, intron 4 of 11)	-18107	NM_207420	155184	Hs.531239	NM_207420	HPRD:15365	SLC2A7	GLUT7	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_38545	chr16	70426150	70426301	+	9.43559	NA	intron (NM_006927, intron 3 of 6)	intron (NM_006927, intron 3 of 6)	45401	NM_018332	55308	Hs.656037	NM_018332	HPRD:07732	DDX19A	DDX19-DDX19L|DDX19L	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A	protein-coding
19-PTNLD28-TUMOR_peak_78023	chr4	170266629	170266885	+	9.43559	NA	Intergenic	Intergenic	-74508	NM_020870	57630	Hs.301804	NM_020870	HPRD:15335	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
19-PTNLD28-TUMOR_peak_104716	chr9	97553819	97554006	+	9.43559	NA	intron (NM_032823, intron 3 of 14)	AluJo|SINE|Alu	-18332	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_471	chr1	7945749	7945923	+	9.43559	NA	Intergenic	Intergenic	-32285	NM_021995	10911	Hs.715862	NM_006786	HPRD:04976	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
19-PTNLD28-TUMOR_peak_36221	chr16	10322205	10322362	+	9.43559	NA	Intergenic	LTR16A2|LTR|ERVL	-45672	NM_000833	2903	Hs.411472	NM_000833	HPRD:00698	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	protein-coding
19-PTNLD28-TUMOR_peak_71296	chr3	140321735	140321903	+	9.43559	NA	Intergenic	Intergenic	-75047	NM_152616	287015	Hs.343487	NM_152616	HPRD:15559	TRIM42	PPP1R40	tripartite motif containing 42	protein-coding
19-PTNLD28-TUMOR_peak_101280	chr8	137493478	137493600	+	9.43559	NA	Intergenic	L2a|LINE|L2	932292	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_3380	chr1	48835044	48835147	+	9.43559	NA	intron (NM_019073, intron 9 of 12)	L1PA3|LINE|L1	102785	NM_001286238	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_23699	chr12	33003487	33003700	+	9.43559	NA	intron (NM_004572, intron 5 of 13)	intron (NM_004572, intron 5 of 13)	46187	NM_004572	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_48517	chr19	33083932	33084068	+	9.43559	NA	Intergenic	L1PA3|LINE|L1	11906	NM_004708	9141	Hs.443831	NM_004708	HPRD:06843	PDCD5	TFAR19	programmed cell death 5	protein-coding
19-PTNLD28-TUMOR_peak_67352	chr3	30620730	30620991	+	9.43559	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-27134	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_8978	chr1	192549627	192549794	+	9.43559	NA	TTS (NM_002922)	TTS (NM_002922)	4853	NM_002922	5996	Hs.75256	NM_002922	HPRD:15968	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_74523	chr4	11150986	11151417	+	9.43559	NA	Intergenic	L1PA3|LINE|L1	-219250	NR_030298	693157		NR_030298	miRBase:MI0003579	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
19-PTNLD28-TUMOR_peak_88115	chr6	56460452	56460549	+	9.43559	NA	intron (NM_183380, intron 38 of 93)	L2a|LINE|L2	47194	NM_015548	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_9953	chr1	212093510	212093771	+	9.43559	NA	Intergenic	Intergenic	-89526	NM_014873	9926	Hs.744851	NM_014873	HPRD:14304	LPGAT1	FAM34A|FAM34A1|NET8	lysophosphatidylglycerol acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_66641	chr3	11952713	11952902	+	9.43559	NA	Intergenic	Intergenic	-64414	NM_001284401	132001	Hs.475472	NM_138807	HPRD:14452	TAMM41	C3orf31|RAM41|TAM41	TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70174	chr3	122637893	122638038	+	9.43559	NA	intron (NM_001256347, intron 12 of 22)	L3|LINE|CR1	32605	NR_024618	100129550	Hs.61558	NR_024618	ENSG00000273033	LOC100129550	-	uncharacterized LOC100129550	ncRNA
19-PTNLD28-TUMOR_peak_67193	chr3	24227441	24227811	+	9.43559	NA	intron (NR_121667, intron 3 of 3)	intron (NR_121667, intron 3 of 3)	34811	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
19-PTNLD28-TUMOR_peak_17137	chr11	11066113	11066371	+	9.43559	NA	Intergenic	Intergenic	186478	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108214	chrX	48024786	48024919	+	9.43559	NA	Intergenic	AluSg|SINE|Alu	31347	NM_175723	6758	Hs.166198	NM_021015	HPRD:02267	SSX5	-	synovial sarcoma, X breakpoint 5	protein-coding
19-PTNLD28-TUMOR_peak_31003	chr14	69444259	69444488	+	9.43140	NA	intron (NM_001102, intron 1 of 20)	intron (NM_001102, intron 1 of 20)	1710	NM_001130004	87	Hs.509765	NM_001102	HPRD:00020	ACTN1	BDPLT15	actinin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_38597	chr16	71125974	71126097	+	9.42961	NA	intron (NM_001270974, intron 11 of 85)	intron (NM_001270974, intron 11 of 85)	138590	NM_001270974	54768	Hs.461229	NM_017558	HPRD:11042	HYDIN	CILD5|HYDIN1|HYDIN2|PPP1R31	HYDIN, axonemal central pair apparatus protein	protein-coding
19-PTNLD28-TUMOR_peak_46395	chr18	77268176	77268364	+	9.42961	NA	intron (NM_172387, intron 9 of 9)	G-rich|Low_complexity|Low_complexity	107996	NM_172389	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_96350	chr7	150823764	150823867	+	9.42961	NA	intron (NM_031946, intron 9 of 17)	intron (NM_031946, intron 9 of 17)	40016	NM_001042535	116988	Hs.647075	NM_031946	HPRD:16707	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_83	chr1	937267	937404	+	9.42961	NA	Intergenic	CpG-24	-1783	NM_021170	57801	Hs.154029	NM_021170	HPRD:16273	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_86127	chr6	26286689	26286825	+	9.42867	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	-1030	NM_003543	8365	Hs.591790	NM_003543	HPRD:11919	HIST1H4H	H4/h|H4FH	histone cluster 1, H4h	protein-coding
19-PTNLD28-TUMOR_peak_37271	chr16	30786207	30786427	+	9.42867	NA	3' UTR (NM_001207034, exon 18 of 18)	3' UTR (NM_001207034, exon 18 of 18)	12206	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
19-PTNLD28-TUMOR_peak_64668	chr22	23524765	23524976	+	9.42827	NA	intron (NM_004327, intron 1 of 22)	intron (NM_004327, intron 1 of 22)	2318	NM_004327	613	Hs.517461	NM_004327	HPRD:01044	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
19-PTNLD28-TUMOR_peak_9555	chr1	204654069	204654739	+	9.42827	NA	promoter-TSS (NM_006338)	promoter-TSS (NM_006338)	77	NM_006338	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_54439	chr2	99533560	99533733	+	9.42827	NA	intron (NM_207362, intron 1 of 9)	L1ME4a|LINE|L1	19038	NM_207362	343990	Hs.469398	NM_207362	HPRD:14620	KIAA1211L	C2orf55	KIAA1211-like	protein-coding
19-PTNLD28-TUMOR_peak_98805	chr8	55192159	55192302	+	9.42442	NA	Intergenic	Intergenic	144449	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_86212	chr6	27155964	27156071	+	9.42442	NA	Intergenic	HERVKC4-int|LTR|ERVK	40612	NR_036096	100422934		NR_036096	miRBase:MI0014167	MIR3143	-	microRNA 3143	ncRNA
19-PTNLD28-TUMOR_peak_33125	chr15	39873213	39873334	+	9.42442	NA	promoter-TSS (NM_003246)	promoter-TSS (NM_003246)	-7	NM_003246	7057	Hs.164226	NM_003246		THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
19-PTNLD28-TUMOR_peak_54232	chr2	96191577	96191782	+	9.42442	NA	Intergenic	MER5A|DNA|hAT-Charlie	-41200	NM_001164464	653192	Hs.723811	NM_001164464		TRIM43B	-	tripartite motif containing 43B	protein-coding
19-PTNLD28-TUMOR_peak_79839	chr5	52281176	52281324	+	9.42424	NA	Intergenic	Intergenic	-3906	NM_002203	3673	Hs.482077	NM_002203	HPRD:01893	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_62608	chr20	62321448	62321575	+	9.42277	NA	exon (NM_016434, exon 25 of 35)	exon (NM_016434, exon 25 of 35)	-6493	NM_003823	8771	Hs.434878	NM_003823	HPRD:04527	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	tumor necrosis factor receptor superfamily, member 6b, decoy	protein-coding
19-PTNLD28-TUMOR_peak_95632	chr7	137193233	137193462	+	9.42206	NA	intron (NM_004717, intron 21 of 33)	MER67D|LTR|ERV1	-164801	NM_002825	5764	Hs.371249	NM_002825	HPRD:01199	PTN	HARP|HBGF8|HBNF|NEGF1	pleiotrophin	protein-coding
19-PTNLD28-TUMOR_peak_83414	chr5	154320504	154320958	+	9.42206	NA	promoter-TSS (NM_014180)	promoter-TSS (NM_014180)	98	NM_014180	29093	Hs.483924	NM_014180	HPRD:14748	MRPL22	L22mt|MRP-L22|MRP-L25|RPML25	mitochondrial ribosomal protein L22	protein-coding
19-PTNLD28-TUMOR_peak_78379	chr4	186637847	186638000	+	9.42206	NA	intron (NM_001145672, intron 1 of 20)	intron (NM_001145672, intron 1 of 20)	59143	NM_001145673	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_9310	chr1	202113412	202113554	+	9.41894	NA	intron (NM_001256129, intron 1 of 5)	CpG	388	NM_138795	127829	Hs.497399	NM_138795	HPRD:09807	ARL8A	ARL10B|GIE2	ADP-ribosylation factor-like 8A	protein-coding
19-PTNLD28-TUMOR_peak_96651	chr7	155598250	155598448	+	9.41894	NA	intron (NM_000193, intron 2 of 2)	CpG	6618	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
19-PTNLD28-TUMOR_peak_20413	chr11	85828172	85828375	+	9.41894	NA	Intergenic	Intergenic	-47350	NM_001206947	8301	Hs.163893	NM_007166	HPRD:04320	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
19-PTNLD28-TUMOR_peak_12661	chr10	29876241	29876382	+	9.41390	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	14964	NR_030634	100126327		NR_030634	miRBase:MI0005760	MIR938	MIRN938|hsa-mir-938	microRNA 938	ncRNA
19-PTNLD28-TUMOR_peak_12512	chr10	25790966	25791271	+	9.41054	NA	intron (NM_020752, intron 5 of 10)	intron (NM_020752, intron 5 of 10)	-149523	NR_108068	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_9275	chr1	201872376	201872500	+	9.41054	NA	intron (NM_012134, intron 1 of 2)	intron (NM_012134, intron 1 of 2)	14633	NM_198149	149345	Hs.632471	NM_198149	HPRD:12729	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
19-PTNLD28-TUMOR_peak_19751	chr11	70588853	70589019	+	9.41054	NA	intron (NM_012309, intron 11 of 22)	intron (NM_012309, intron 11 of 22)	-80991	NR_110766	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_11698	chr10	3335769	3335905	+	9.41054	NA	Intergenic	Intergenic	-120804	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_65884	chr22	45093422	45093632	+	9.41054	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	-4551	NM_181333	55615	Hs.102336	NM_015366	HPRD:18696	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5 (renal)	protein-coding
19-PTNLD28-TUMOR_peak_22957	chr12	8834072	8834271	+	9.41054	NA	promoter-TSS (NR_123740)	promoter-TSS (NR_123740)	-102	NR_123740	57494	Hs.504670	NM_020734	HPRD:13844	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
19-PTNLD28-TUMOR_peak_19817	chr11	71515255	71515583	+	9.41054	NA	intron (NR_073386, intron 2 of 3)	intron (NR_073386, intron 2 of 3)	9486	NR_073386	285407	Hs.546711	NR_073386	ENSG00000248671	ALG1L9P	-	asparagine-linked glycosylation 1-like 9, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_83739	chr5	167786900	167787017	+	9.41054	NA	intron (NM_015238, intron 1 of 22)	Kanga1b|DNA|TcMar-Tc2	67893	NM_001161662	23286	Hs.484047	NM_015238	HPRD:10033	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_5156	chr1	100147851	100148305	+	9.41054	NA	intron (NM_017734, intron 3 of 7)	intron (NM_017734, intron 3 of 7)	-6533	NR_037516	100500863		NR_037516	miRBase:MI0016689	MIR548AA1	-	microRNA 548aa-1	ncRNA
19-PTNLD28-TUMOR_peak_49997	chr19	51286954	51287106	+	9.41054	NA	Intergenic	Intergenic	-6642	NM_033068	93650	Hs.293394	NM_033068	HPRD:06964	ACPT	-	acid phosphatase, testicular	protein-coding
19-PTNLD28-TUMOR_peak_8321	chr1	175124135	175124261	+	9.41054	NA	Intergenic	Intergenic	37751	NM_001162895	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_13273	chr10	45301016	45301234	+	9.41054	NA	Intergenic	Intergenic	-105639	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_3911	chr1	61038908	61039021	+	9.41054	NA	Intergenic	Intergenic	252292	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_3646	chr1	54875233	54875367	+	9.40926	NA	Intergenic	Intergenic	-3232	NM_018070	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_49814	chr19	49653204	49653646	+	9.40896	NA	intron (NM_003660, intron 29 of 29)	CpG-14142	5256	NM_002152	3270	Hs.436885	NM_002152	HPRD:00818	HRC	-	histidine rich calcium binding protein	protein-coding
19-PTNLD28-TUMOR_peak_31243	chr14	74223110	74223458	+	9.40896	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-2166	NR_039727	100616158		NR_039727	miRBase:MI0016868	MIR4505	-	microRNA 4505	ncRNA
19-PTNLD28-TUMOR_peak_17849	chr11	32452672	32452902	+	9.40744	NA	promoter-TSS (NM_001198551)	promoter-TSS (NM_001198551)	-424	NM_001198551	7490	Hs.591980	NM_000378	HPRD:06163	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
19-PTNLD28-TUMOR_peak_46662	chr19	2478845	2479013	+	9.40707	NA	TTS (NM_015675)	TTS (NM_015675)	2806	NM_015675	4616	Hs.110571	NM_015675	HPRD:05382	GADD45B	GADD45BETA|MYD118	growth arrest and DNA-damage-inducible, beta	protein-coding
19-PTNLD28-TUMOR_peak_29764	chr14	32671255	32671388	+	9.40707	NA	promoter-TSS (NR_125730).3	promoter-TSS (NR_125730).3	70	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_96716	chr7	157131343	157131470	+	9.40678	NA	intron (NM_058246, intron 1 of 9)	intron (NM_058246, intron 1 of 9)	1695	NM_058246	10049	Hs.490745	NM_005494	HPRD:07107	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ (Hsp40) homolog, subfamily B, member 6	protein-coding
19-PTNLD28-TUMOR_peak_14205	chr10	73119215	73119617	+	9.40678	NA	intron (NM_001174098, intron 5 of 5)	intron (NM_001174098, intron 5 of 5)	-37275	NM_001171931	64072	Hs.656032	NM_022124	HPRD:05699	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
19-PTNLD28-TUMOR_peak_39984	chr17	7359571	7359744	+	9.40678	NA	intron (NM_000747, intron 10 of 10)	AluSx|SINE|Alu	11251	NM_000747	1140	Hs.330386	NM_000747	HPRD:01156	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|SCCMS	cholinergic receptor, nicotinic, beta 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_5412	chr1	110305646	110305874	+	9.40678	NA	intron (NM_133181, intron 1 of 18)	intron (NM_133181, intron 1 of 18)	884	NM_139053	79574	Hs.485352	NM_024526	HPRD:13277	EPS8L3	EPS8R3	EPS8-like 3	protein-coding
19-PTNLD28-TUMOR_peak_95033	chr7	126527682	126527931	+	9.40678	NA	intron (NR_028041, intron 5 of 10)	intron (NR_028041, intron 5 of 10)	170432	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_53839	chr2	85992533	85992906	+	9.40678	NA	intron (NM_032827, intron 2 of 2)	intron (NM_032827, intron 2 of 2)	11810	NM_032827	84913	Hs.135569	NM_032827		ATOH8	HATH6|bHLHa21	atonal homolog 8 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_71518	chr3	146231530	146231792	+	9.40678	NA	Intergenic	Intergenic	-17883	NM_001199979	57047	Hs.744414	NM_020359	HPRD:09621	PLSCR2	-	phospholipid scramblase 2	protein-coding
19-PTNLD28-TUMOR_peak_9422	chr1	203311735	203311869	+	9.40678	NA	intron (NR_103757, intron 1 of 1)	intron (NR_103757, intron 1 of 1)	8755	NM_002023	2331	Hs.519168	NM_002023	HPRD:02591	FMOD	FM|SLRR2E	fibromodulin	protein-coding
19-PTNLD28-TUMOR_peak_45100	chr18	29070876	29071078	+	9.40678	NA	Intergenic	Intergenic	-7050	NM_001943	1829	Hs.412597	NM_001943	HPRD:00516	DSG2	ARVC10|ARVD10|CDHF5|CMD1BB|HDGC	desmoglein 2	protein-coding
19-PTNLD28-TUMOR_peak_105869	chr9	124068030	124068228	+	9.40678	NA	intron (NM_001127662, intron 3 of 16)	intron (NM_001127662, intron 3 of 16)	6050	NM_000177	2934	Hs.522373	NM_000177	HPRD:00674	GSN	ADF|AGEL	gelsolin	protein-coding
19-PTNLD28-TUMOR_peak_91827	chr7	30174292	30174671	+	9.40678	NA	promoter-TSS (NM_152793)	promoter-TSS (NM_152793)	-71	NM_152793	222166	Hs.200100	NM_152793	HPRD:07635	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding
19-PTNLD28-TUMOR_peak_12172	chr10	15412990	15413283	+	9.40678	NA	promoter-TSS (NM_001010924)	promoter-TSS (NM_001010924)	-78	NM_001010924	221061	Hs.66762	NM_001010924	HPRD:18581	FAM171A1	C10orf38	family with sequence similarity 171, member A1	protein-coding
19-PTNLD28-TUMOR_peak_62554	chr20	61656935	61657222	+	9.40678	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	11302	NR_028295	100144596	Hs.187773	NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
19-PTNLD28-TUMOR_peak_82853	chr5	142249690	142249875	+	9.40661	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	-1307	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22617	chr12	4918388	4918583	+	9.40661	NA	5' UTR (NM_002235, exon 1 of 2)	5' UTR (NM_002235, exon 1 of 2)	143	NM_002235	3742	Hs.306190	NM_002235	HPRD:08884	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel, shaker-related subfamily, member 6	protein-coding
19-PTNLD28-TUMOR_peak_55593	chr2	128990655	128990867	+	9.40661	NA	Intergenic	CpG	85410	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_66027	chr22	47146469	47146628	+	9.40661	NA	Intergenic	Intergenic	-11966	NM_001284303	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_21663	chr11	120679369	120679536	+	9.40661	NA	intron (NM_001282470, intron 3 of 19)	intron (NM_001282470, intron 3 of 19)	-215351	NM_001130047	219899	Hs.504136	NM_152715		TBCEL	El|LRRC35	tubulin folding cofactor E-like	protein-coding
19-PTNLD28-TUMOR_peak_12332	chr10	21814602	21814950	+	9.40661	NA	promoter-TSS (NM_207371)	promoter-TSS (NM_207371)	-165	NM_207371	387640	Hs.350848	NM_207371	HPRD:16981	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96147	chr7	148258347	148258443	+	9.40661	NA	Intergenic	Intergenic	-29262	NM_145304	202865	Hs.352212	NM_145304	HPRD:12921	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_1761	chr1	27676417	27676553	+	9.39978	NA	exon (NM_001193308, exon 9 of 15)	exon (NM_001193308, exon 9 of 15)	8002	NM_032872	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_19102	chr11	63754170	63754345	+	9.39978	NA	intron (NR_003089, intron 1 of 5)	CpG	932	NM_017670	55611	Hs.473788	NM_017670		OTUB1	OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
19-PTNLD28-TUMOR_peak_77296	chr4	141676998	141677218	+	9.39978	NA	exon (NM_015130, exon 1 of 21)	exon (NM_015130, exon 1 of 21)	363	NM_015130	23158	Hs.480819	NM_015130	HPRD:11115	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
19-PTNLD28-TUMOR_peak_47535	chr19	13730340	13730445	+	9.39757	NA	Intergenic	Intergenic	-113118	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_86329	chr6	28589048	28589600	+	9.39609	NA	Intergenic	L1PA3|LINE|L1	-34212	NM_052923	114821	Hs.176980	NM_052923	HPRD:11720	ZBED9	Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	zinc finger, BED-type containing 9	protein-coding
19-PTNLD28-TUMOR_peak_44412	chr18	7022118	7022522	+	9.39609	NA	intron (NM_005559, intron 19 of 62)	intron (NM_005559, intron 19 of 62)	-92452	NR_034100	400643	Hs.253920	NM_001103383	ENSG00000265933	LINC00668	-	long intergenic non-protein coding RNA 668	ncRNA
19-PTNLD28-TUMOR_peak_8264	chr1	173389559	173389707	+	9.39609	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	56661	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_2537	chr1	38221132	38221244	+	9.39609	NA	intron (NM_001099439, intron 3 of 16)	intron (NM_001099439, intron 3 of 16)	9636	NM_001099439	284656	Hs.129435	NM_173641	HPRD:08163	EPHA10	-	EPH receptor A10	protein-coding
19-PTNLD28-TUMOR_peak_102518	chr9	24580000	24580112	+	9.39609	NA	Intergenic	L1PA2|LINE|L1	-34382	NM_001271706	100129669	Hs.573530	NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
19-PTNLD28-TUMOR_peak_40041	chr17	7959551	7959724	+	9.39609	NA	Intergenic	Intergenic	17279	NM_001141	247	Hs.111256	NM_001141	HPRD:04739	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase, type B	protein-coding
19-PTNLD28-TUMOR_peak_31277	chr14	74991190	74991442	+	9.39609	NA	intron (NM_000428, intron 15 of 35)	intron (NM_000428, intron 15 of 35)	30893	NM_194279	122961	Hs.291079	NM_194279		ISCA2	HBLD1|ISA2|c14_5557	iron-sulfur cluster assembly 2	protein-coding
19-PTNLD28-TUMOR_peak_106279	chr9	131266784	131267078	+	9.39609	NA	promoter-TSS (NM_001499)	promoter-TSS (NM_001499)	-40	NM_001499	2733	Hs.522418	NM_001499	HPRD:04536	GLE1	GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
19-PTNLD28-TUMOR_peak_22023	chr11	128016900	128017540	+	9.39609	NA	Intergenic	Intergenic	374985	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_6473	chr1	147477544	147477687	+	9.39609	NA	non-coding (NR_111936, exon 5 of 10)	non-coding (NR_111936, exon 5 of 10)	9573	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_91170	chr7	6475333	6475525	+	9.39609	NA	intron (NM_139179, intron 3 of 14)	intron (NM_139179, intron 3 of 14)	12214	NM_001142936	221955	Hs.487498	NM_139179	HPRD:17324	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase, beta	protein-coding
19-PTNLD28-TUMOR_peak_29076	chr13	111213717	111214071	+	9.39609	NA	5' UTR (NM_017817, exon 1 of 2)	5' UTR (NM_017817, exon 1 of 2)	177	NM_017817	55647	Hs.743563	NM_017817	HPRD:06694	RAB20	-	RAB20, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_63241	chr21	34745874	34746074	+	9.39609	NA	Intergenic	Intergenic	-29228	NM_005534	3460	Hs.634632	NM_005534	HPRD:00956	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
19-PTNLD28-TUMOR_peak_2221	chr1	33761205	33761362	+	9.39609	NA	intron (NM_152493, intron 8 of 8)	intron (NM_152493, intron 8 of 8)	25416	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_92093	chr7	39468974	39469274	+	9.39609	NA	intron (NM_001166018, intron 7 of 10)	intron (NM_001166018, intron 7 of 10)	-23179	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10466	chr1	226163799	226163930	+	9.39609	NA	Intergenic	Intergenic	23202	NM_152608	163859	Hs.520192	NM_152608	HPRD:08180	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_27453	chr13	23949525	23949649	+	9.39609	NA	promoter-TSS (NM_001278055)	promoter-TSS (NM_001278055)	95	NM_001278055	26278	Hs.159492	NM_014363	HPRD:05135	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
19-PTNLD28-TUMOR_peak_45586	chr18	45664108	45664225	+	9.39608	NA	promoter-TSS (NM_001039360)	promoter-TSS (NM_001039360)	-486	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_2077	chr1	32253785	32253951	+	9.39364	NA	Intergenic	Intergenic	-24204	NM_001294335	576	Hs.524138	NM_001703	HPRD:04063	BAI2	-	brain-specific angiogenesis inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_61998	chr20	51589679	51590027	+	9.39364	NA	exon (NM_173485, exon 1 of 3)	exon (NM_173485, exon 1 of 3)	907	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_39041	chr16	83946223	83946474	+	9.39364	NA	intron (NM_012213, intron 4 of 4)	intron (NM_012213, intron 4 of 4)	13618	NM_012213	23417	Hs.644610	NM_012213	HPRD:05999	MLYCD	MCD	malonyl-CoA decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_58319	chr2	217556270	217556395	+	9.39364	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	3940	NM_000599	3488	Hs.607212	NM_000599	HPRD:00901	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_9311	chr1	202113716	202114019	+	9.39291	NA	promoter-TSS (NM_138795)	promoter-TSS (NM_138795)	4	NM_138795	127829	Hs.497399	NM_138795	HPRD:09807	ARL8A	ARL10B|GIE2	ADP-ribosylation factor-like 8A	protein-coding
19-PTNLD28-TUMOR_peak_71957	chr3	157212071	157212196	+	9.39291	NA	intron (NM_001167911, intron 2 of 12)	intron (NM_001167911, intron 2 of 12)	1162	NM_001167917	79674	Hs.658046	NM_024621	HPRD:07782	VEPH1	MELT|VEPH	ventricular zone expressed PH domain-containing 1	protein-coding
19-PTNLD28-TUMOR_peak_17552	chr11	19222374	19222615	+	9.39291	NA	intron (NM_003476, intron 2 of 6)	intron (NM_003476, intron 2 of 6)	9624	NM_003476	8048	Hs.83577	NM_003476	HPRD:07525	CSRP3	CLP|CMD1M|CMH12|CRP3|LMO4|MLP	cysteine and glycine-rich protein 3 (cardiac LIM protein)	protein-coding
19-PTNLD28-TUMOR_peak_70394	chr3	125093340	125093699	+	9.39291	NA	intron (NM_021964, intron 1 of 8)	intron (NM_021964, intron 1 of 8)	679	NM_021964	7707	Hs.592591	NM_021964	HPRD:03540	ZNF148	BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
19-PTNLD28-TUMOR_peak_1533	chr1	24477767	24478043	+	9.39291	NA	Intergenic	LTR10D|LTR|ERV1	-8130	NM_021258	58985	Hs.110915	NM_021258	HPRD:16108	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_22914	chr12	8185178	8185402	+	9.39291	NA	promoter-TSS (NM_018416)	promoter-TSS (NM_018416)	-69	NM_018416	55810	Hs.120844	NM_018416	HPRD:17014	FOXJ2	FHX	forkhead box J2	protein-coding
19-PTNLD28-TUMOR_peak_86676	chr6	31865426	31865658	+	9.38929	NA	promoter-TSS (NM_006709).2	promoter-TSS (NM_006709).2	-20	NM_001282457	717	Hs.408903	NM_000063	HPRD:08939	C2	ARMD14|CO2	complement component 2	protein-coding
19-PTNLD28-TUMOR_peak_73843	chr4	1582262	1582437	+	9.38784	NA	Intergenic	C-rich|Low_complexity|Low_complexity	103369	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_82611	chr5	139633687	139633822	+	9.38088	NA	intron (NM_002622, intron 3 of 3)	MER58A|DNA|hAT-Charlie	48935	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_75622	chr4	72052811	72053214	+	9.38088	NA	promoter-TSS (NM_001134742)	promoter-TSS (NM_001134742)	9	NM_001098484	8671	Hs.5462	NM_003759	HPRD:04516	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|pNBC	solute carrier family 4 (sodium bicarbonate cotransporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_54587	chr2	102643935	102644401	+	9.38088	NA	intron (NR_048564, intron 8 of 8)	intron (NR_048564, intron 8 of 8)	28744	NR_048564	7850	Hs.25333	NM_004633	HPRD:00995	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor, type II	protein-coding
19-PTNLD28-TUMOR_peak_3846	chr1	59500600	59500965	+	9.38088	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	14634	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
19-PTNLD28-TUMOR_peak_74781	chr4	24796968	24797208	+	9.38088	NA	promoter-TSS (NM_003102)	promoter-TSS (NM_003102)	3	NM_003102	6649	Hs.2420	NM_003102	HPRD:01708	SOD3	EC-SOD	superoxide dismutase 3, extracellular	protein-coding
19-PTNLD28-TUMOR_peak_44640	chr18	12272036	12272136	+	9.38088	NA	intron (NR_036468, intron 3 of 4)	intron (NR_036468, intron 3 of 4)	17726	NR_036468	1149	Hs.249129	NM_001279		CIDEA	CIDE-A	cell death-inducing DFFA-like effector a	protein-coding
19-PTNLD28-TUMOR_peak_67415	chr3	32433155	32433287	+	9.38088	NA	promoter-TSS (NM_138410)	promoter-TSS (NM_138410)	58	NM_181472	112616	Hs.440494	NM_138410	HPRD:06988	CMTM7	CKLFSF7	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_69556	chr3	106783368	106783545	+	9.38088	NA	Intergenic	Intergenic	176029	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_80795	chr5	76070494	76070616	+	9.38088	NA	Intergenic	Intergenic	-44278	NM_005242	2150	Hs.744181	NM_005242	HPRD:02960	F2RL1	GPR11|PAR2	coagulation factor II (thrombin) receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88959	chr6	106958567	106958750	+	9.38088	NA	Intergenic	CpG	-1072	NM_001624	202	Hs.724262	NM_001624	HPRD:18576	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
19-PTNLD28-TUMOR_peak_59937	chr20	16366179	16366366	+	9.38088	NA	intron (NM_024704, intron 17 of 25)	MIR|SINE|MIR	187807	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_31384	chr14	76963484	76963788	+	9.38088	NA	intron (NM_004452, intron 8 of 10)	intron (NM_004452, intron 8 of 10)	125946	NM_004452	2103	Hs.435845	NM_004452	HPRD:03700	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_59563	chr20	3708111	3708591	+	9.38088	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-4966	NM_052970	116835	Hs.516854	NM_052970	HPRD:13683	HSPA12B	C20orf60|dJ1009E24.2	heat shock 70kD protein 12B	protein-coding
19-PTNLD28-TUMOR_peak_24511	chr12	54225119	54225319	+	9.38088	NA	Intergenic	MIR|SINE|MIR	-74401	NR_104332	102216268	Hs.742074	NR_104332		CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
19-PTNLD28-TUMOR_peak_4723	chr1	88741930	88742189	+	9.38088	NA	Intergenic	Intergenic	-407863	NM_006256	5586	Hs.440833	NM_006256	HPRD:03972	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
19-PTNLD28-TUMOR_peak_54359	chr2	97891850	97891960	+	9.38088	NA	intron (NM_001164315, intron 67 of 75)	L1PA3|LINE|L1	-52549	NR_103732	100506076	Hs.732616	NR_103732		LOC100506076	-	uncharacterized LOC100506076	ncRNA
19-PTNLD28-TUMOR_peak_36370	chr16	12740735	12741056	+	9.38088	NA	Intergenic	Intergenic	-73283	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_52927	chr2	60189029	60189278	+	9.38088	NA	Intergenic	Intergenic	425427	NR_039631	100616473		NR_039631	miRBase:MI0016772	MIR4432	-	microRNA 4432	ncRNA
19-PTNLD28-TUMOR_peak_29603	chr14	24809210	24809325	+	9.38088	NA	promoter-TSS (NM_006871)	promoter-TSS (NM_006871)	-25	NM_006871	11035	Hs.268551	NM_006871	HPRD:09315	RIPK3	RIP3	receptor-interacting serine-threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_31352	chr14	76071688	76072213	+	9.38088	NA	exon (NM_001195283, exon 1 of 10)	exon (NM_001195283, exon 1 of 10)	145	NM_001195283	55640	Hs.509966	NM_017791	HPRD:12654	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	feline leukemia virus subgroup C cellular receptor family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_84932	chr6	3819679	3819893	+	9.37332	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-29846	NM_012135	26240	Hs.140944	NM_012135	HPRD:16883	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
19-PTNLD28-TUMOR_peak_19824	chr11	71698838	71698982	+	9.37332	NA	intron (NM_001300926, intron 4 of 6)	intron (NM_001300926, intron 4 of 6)	-11048	NM_001039660	10068	Hs.591967	NM_005699	HPRD:04984	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_51032	chr2	10121517	10121642	+	9.37332	NA	intron (NM_198182, intron 8 of 15)	intron (NM_198182, intron 8 of 15)	29787	NM_198182	29841	Hs.418493	NM_198182	HPRD:18176	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_13758	chr10	61385908	61386074	+	9.37332	NA	Intergenic	Intergenic	83658	NM_194298	220963	Hs.499709	NM_194298	HPRD:15348	SLC16A9	C10orf36|MCT9	solute carrier family 16, member 9	protein-coding
19-PTNLD28-TUMOR_peak_69314	chr3	93560571	93560687	+	9.37332	NA	Intergenic	Intergenic	132305	NM_000313	5627	Hs.64016	NM_000313	HPRD:01473	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_101051	chr8	132925402	132925527	+	9.37332	NA	intron (NM_015137, intron 1 of 22)	intron (NM_015137, intron 1 of 22)	9108	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_95408	chr7	131804745	131804868	+	9.37332	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	209827	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_106023	chr9	126841502	126841755	+	9.37332	NA	Intergenic	Intergenic	67739	NM_004789	9355	Hs.696425	NM_004789	HPRD:04786	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_86932	chr6	34359565	34359829	+	9.37332	NA	intron (NM_001202470, intron 5 of 8)	CpG	760	NM_006703	11165	Hs.188882	NM_006703		NUDT3	DIPP|DIPP-1|DIPP1	nudix (nucleoside diphosphate linked moiety X)-type motif 3	protein-coding
19-PTNLD28-TUMOR_peak_27854	chr13	37101128	37101262	+	9.37332	NA	Intergenic	Intergenic	94786	NM_003914	8900	Hs.417050	NM_003914	HPRD:04946	CCNA1	CT146	cyclin A1	protein-coding
19-PTNLD28-TUMOR_peak_96322	chr7	150693596	150694005	+	9.37287	NA	intron (NM_000603, intron 4 of 26)	intron (NM_000603, intron 4 of 26)	2908	NM_001160111	4846	Hs.647092	NM_000603	HPRD:01224	NOS3	ECNOS|eNOS	nitric oxide synthase 3 (endothelial cell)	protein-coding
19-PTNLD28-TUMOR_peak_38534	chr16	70230691	70230789	+	9.37287	NA	Intergenic	Intergenic	22812	NM_173619	283971	Hs.556045	NM_173619	HPRD:14587	CLEC18C	MRCL|MRCL3	C-type lectin domain family 18, member C	protein-coding
19-PTNLD28-TUMOR_peak_103768	chr9	73217481	73217605	+	9.37287	NA	intron (NM_001007471, intron 19 of 24)	intron (NM_001007471, intron 19 of 24)	-187970	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_66105	chr22	50709255	50709479	+	9.37287	NA	promoter-TSS (NM_002751)	promoter-TSS (NM_002751)	-545	NM_002751	5600	Hs.57732	NM_002751	HPRD:04208	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
19-PTNLD28-TUMOR_peak_75790	chr4	77645146	77645337	+	9.37287	NA	intron (NM_020859, intron 3 of 10)	intron (NM_020859, intron 3 of 10)	150520	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_57070	chr2	175546879	175547070	+	9.37287	NA	intron (NM_001077269, intron 1 of 7)	CpG	653	NM_001077269	7456	Hs.128067	NM_003387	HPRD:03835	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_93409	chr7	75121781	75121887	+	9.37287	NA	Intergenic	AluSq2|SINE|Alu	-2465	NM_001099435	442590	Hs.632298	NM_001099435		SPDYE5	-	speedy/RINGO cell cycle regulator family member E5	protein-coding
19-PTNLD28-TUMOR_peak_82961	chr5	145427053	145427271	+	9.37287	NA	intron (NM_152550, intron 5 of 9)	intron (NM_152550, intron 5 of 9)	56784	NM_001029869	153770	Hs.162369	NM_001029869	HPRD:18737	PLAC8L1	-	PLAC8-like 1	protein-coding
19-PTNLD28-TUMOR_peak_29498	chr14	23615241	23615435	+	9.37175	NA	intron (NM_012244, intron 3 of 10)	intron (NM_012244, intron 3 of 10)	8321	NM_182728	23428	Hs.596643	NM_012244	HPRD:11971	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
19-PTNLD28-TUMOR_peak_93234	chr7	73414109	73414329	+	9.37175	NA	Intergenic	Intergenic	-27900	NM_001278914	2006	Hs.647061	NM_000501	HPRD:00556	ELN	SVAS|WBS|WS	elastin	protein-coding
19-PTNLD28-TUMOR_peak_8005	chr1	167761200	167761458	+	9.37175	NA	TTS (NM_003953)	TTS (NM_003953)	70142	NM_001146191	9019	Hs.493919	NM_003953	HPRD:05086	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
19-PTNLD28-TUMOR_peak_102910	chr9	35945777	35945922	+	9.37175	NA	Intergenic	LTR50|LTR|ERVL	12302	NM_019897	56656	Hs.553540	NM_019897	HPRD:17704	OR2S2	OR37A|OST715	olfactory receptor, family 2, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_79100	chr5	16493047	16493201	+	9.37175	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	15983	NM_019000	54463	Hs.481704	NM_019000	HPRD:07879	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
19-PTNLD28-TUMOR_peak_61624	chr20	47386045	47386315	+	9.37175	NA	intron (NM_020820, intron 1 of 39)	L2a|LINE|L2	58240	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_47434	chr19	12780161	12780323	+	9.36924	NA	promoter-TSS (NM_032332)	promoter-TSS (NM_032332)	223	NM_016145	51398	Hs.108969	NM_016145		WDR83OS	C19orf56|PTD008	WD repeat domain 83 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_5553	chr1	112282912	112283037	+	9.36677	NA	promoter-TSS (NM_019099)	promoter-TSS (NM_019099)	511	NR_038951	100506343	Hs.485810	NR_038951	ENSG00000227811	FAM212B-AS1	-	FAM212B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34456	chr15	74289450	74289633	+	9.36677	NA	intron (NM_033247, intron 1 of 4)	MER51A|LTR|ERV1	2527	NM_002675	5371	Hs.526464	NM_002675	HPRD:00023	PML	MYL|PP8675|RNF71|TRIM19	promyelocytic leukemia	protein-coding
19-PTNLD28-TUMOR_peak_51821	chr2	28636480	28636604	+	9.36677	NA	3' UTR (NM_005253, exon 4 of 4)	3' UTR (NM_005253, exon 4 of 4)	-19003	NR_103831	403150	Hs.562970	NR_103831	ENSG00000229951	FLJ31356	-	uncharacterized protein FLJ31356	ncRNA
19-PTNLD28-TUMOR_peak_9071	chr1	197893793	197893929	+	9.36523	NA	intron (NM_001014434, intron 4 of 5)	intron (NM_001014434, intron 4 of 5)	7344	NM_020204	56956	Hs.442578	NM_020204	HPRD:07299	LHX9	-	LIM homeobox 9	protein-coding
19-PTNLD28-TUMOR_peak_24530	chr12	54474996	54475371	+	9.36523	NA	intron (NR_026658, intron 1 of 2)	intron (NR_026658, intron 1 of 2)	424	NR_026658	100240735	Hs.635297	NR_026658	ENSG00000250654	LOC100240735	-	uncharacterized LOC100240735	ncRNA
19-PTNLD28-TUMOR_peak_104449	chr9	91653443	91653566	+	9.36523	NA	intron (NM_016848, intron 10 of 11)	intron (NM_016848, intron 10 of 11)	47180	NM_005226	1903	Hs.585118	NM_005226	HPRD:03572	S1PR3	EDG-3|EDG3|LPB3|S1P3	sphingosine-1-phosphate receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_37992	chr16	56763796	56764100	+	9.36523	NA	promoter-TSS (NM_014669)	promoter-TSS (NM_014669)	-69	NM_014669	9688	Hs.276878	NM_014669	HPRD:14854	NUP93	NIC96	nucleoporin 93kDa	protein-coding
19-PTNLD28-TUMOR_peak_65433	chr22	38003085	38003321	+	9.36523	NA	Intergenic	Intergenic	-1278	NM_001001561	26088	Hs.499158	NM_013365	HPRD:12078	GGA1	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25793	chr12	100593803	100593911	+	9.36523	NA	promoter-TSS (NM_022496)	promoter-TSS (NM_022496)	-8	NM_022496	64431	Hs.115088	NM_022496	HPRD:12421	ACTR6	ARP6|HSPC281|MSTP136|hARP6|hARPX	ARP6 actin-related protein 6 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_61209	chr20	42709456	42709623	+	9.36523	NA	Intergenic	Intergenic	106679	NM_175913	57158	Hs.441737	NM_020433	HPRD:12006	JPH2	CMH17|JP-2|JP2	junctophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_15943	chr10	121209362	121209632	+	9.36523	NA	intron (NM_005308, intron 13 of 15)	MER5B|DNA|hAT-Charlie	72013	NR_039829	100616398		NR_039829		MIR4681	-	microRNA 4681	ncRNA
19-PTNLD28-TUMOR_peak_11132	chr1	236183988	236184228	+	9.36523	NA	intron (NM_002508, intron 9 of 19)	intron (NM_002508, intron 9 of 19)	44373	NM_002508	4811	Hs.356624	NM_002508	HPRD:00574	NID1	NID	nidogen 1	protein-coding
19-PTNLD28-TUMOR_peak_76374	chr4	100575682	100575904	+	9.36523	NA	Intergenic	Intergenic	90558	NM_001300785	4547	Hs.195799	NM_000253	HPRD:01144	MTTP	ABL|MTP	microsomal triglyceride transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_17139	chr11	11093655	11093779	+	9.36523	NA	Intergenic	L2b|LINE|L2	213953	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46987	chr19	7708797	7709285	+	9.36523	NA	intron (NM_001272034, intron 13 of 18)	intron (NM_001272034, intron 13 of 18)	7054	NM_001127396	6813	Hs.515104	NM_006949	HPRD:03423	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_92986	chr7	67361203	67361478	+	9.36523	NA	Intergenic	L1PB1|LINE|L1	-123900	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_9109	chr1	199998247	199998626	+	9.36523	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	1706	NM_205860	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_37994	chr16	56774746	56774944	+	9.36523	NA	intron (NM_014669, intron 1 of 21)	SVA_F|Other|Other	10828	NM_014669	9688	Hs.276878	NM_014669	HPRD:14854	NUP93	NIC96	nucleoporin 93kDa	protein-coding
19-PTNLD28-TUMOR_peak_106834	chr9	140131084	140131193	+	9.36481	NA	TTS (NM_001177317)	TTS (NM_001177317)	-4573	NM_006088	10383	Hs.433615	NM_006088	HPRD:04043	TUBB4B	Beta2|TUBB2|TUBB2C	tubulin, beta 4B class IVb	protein-coding
19-PTNLD28-TUMOR_peak_93359	chr7	74491620	74491799	+	9.36481	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1992	NM_148842	81554	Hs.529623	NM_030798	HPRD:15654	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
19-PTNLD28-TUMOR_peak_83073	chr5	148346004	148346167	+	9.36481	NA	Intergenic	Intergenic	96652	NM_024577	79628	Hs.483784	NM_024577		SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_71239	chr3	139258290	139258702	+	9.36412	NA	exon (NM_001130993, exon 1 of 3)	exon (NM_001130993, exon 1 of 3)	175	NM_002899	5947	Hs.529571	NM_002899	HPRD:07036	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1, cellular	protein-coding
19-PTNLD28-TUMOR_peak_85185	chr6	7723421	7723549	+	9.36312	NA	Intergenic	Intergenic	-3526	NM_001718	654	Hs.285671	NM_001718	HPRD:00211	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
19-PTNLD28-TUMOR_peak_34791	chr15	81145252	81145388	+	9.36312	NA	intron (NM_018689, intron 1 of 28)	intron (NM_018689, intron 1 of 28)	-10906	NR_030393	693132		NR_030393	miRBase:MI0003679	MIR549A	MIR549|MIRN549|hsa-mir-549|hsa-mir-549a	microRNA 549a	ncRNA
19-PTNLD28-TUMOR_peak_33241	chr15	41624324	41624477	+	9.36312	NA	promoter-TSS (NM_016359)	promoter-TSS (NM_016359)	419	NM_007280	11339	Hs.661645	NM_007280	HPRD:09352	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
19-PTNLD28-TUMOR_peak_38048	chr16	57519134	57519287	+	9.36312	NA	intron (NM_018110, intron 1 of 8)	intron (NM_018110, intron 1 of 8)	1175	NM_018110	55715	Hs.279832	NM_018110	HPRD:16316	DOK4	-	docking protein 4	protein-coding
19-PTNLD28-TUMOR_peak_109839	chrX	152224718	152224911	+	9.36312	NA	promoter-TSS (NM_013364)	promoter-TSS (NM_013364)	48	NM_001282535	29944	Hs.449627	NM_013364	HPRD:06677	PNMA3	MA3|MA5	paraneoplastic Ma antigen 3	protein-coding
19-PTNLD28-TUMOR_peak_27030	chr12	125401007	125401123	+	9.36045	NA	TTS (NR_049820)	TTS (NR_049820)	972	NR_049820	100847004		NR_049820	miRBase:MI0018167	MIR5188	-	microRNA 5188	ncRNA
19-PTNLD28-TUMOR_peak_44085	chr17	80254208	80254347	+	9.35813	NA	Intergenic	L1MA8|LINE|L1	21203	NM_006137	924	Hs.36972	NM_006137	HPRD:01732	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
19-PTNLD28-TUMOR_peak_2341	chr1	35657607	35658265	+	9.35811	NA	exon (NM_005066, exon 1 of 10)	exon (NM_005066, exon 1 of 10)	807	NM_005066	6421	Hs.355934	NM_005066	HPRD:07284	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline/glutamine-rich	protein-coding
19-PTNLD28-TUMOR_peak_54064	chr2	90284302	90284420	+	9.35811	NA	Intergenic	TAR1|Satellite|telo	1172477	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_94265	chr7	99699451	99699608	+	9.35784	NA	promoter-TSS (NM_005916)	promoter-TSS (NM_005916)	34	NM_005916	4176	Hs.438720	NM_005916	HPRD:01154	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding
19-PTNLD28-TUMOR_peak_74306	chr4	8101678	8101879	+	9.35338	NA	intron (NM_001130085, intron 2 of 17)	intron (NM_001130085, intron 2 of 17)	-28035	NM_001286688	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_37396	chr16	32198806	32198915	+	9.35037	NA	intron (NR_109773, intron 1 of 13)	AluY|SINE|Alu	574	NR_109773	100289574	Hs.531536	NR_109773	ENSG00000230267	HERC2P4	D16F37S5	hect domain and RLD 2 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_22555	chr12	3564062	3564175	+	9.34904	NA	intron (NM_001256536, intron 1 of 9)	LTR26|LTR|ERV1	-36246	NM_019854	56341	Hs.504530	NM_019854	HPRD:11029	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_23702	chr12	33046546	33046651	+	9.34901	NA	intron (NM_001005242, intron 1 of 12)	intron (NM_001005242, intron 1 of 12)	3182	NM_004572	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_56758	chr2	165768499	165768617	+	9.34894	NA	intron (NM_001199148, intron 8 of 10)	Tigger3a|DNA|TcMar-Tigger	43477	NM_001199148	151258	Hs.658702	NM_173512	HPRD:08267	SLC38A11	AVT2	solute carrier family 38, member 11	protein-coding
19-PTNLD28-TUMOR_peak_79481	chr5	35926675	35926791	+	9.34894	NA	intron (NM_144647, intron 1 of 4)	intron (NM_144647, intron 1 of 4)	12004	NM_001042625	133690	Hs.55150	NM_144647	HPRD:14506	CAPSL	-	calcyphosine-like	protein-coding
19-PTNLD28-TUMOR_peak_5110	chr1	98513840	98514019	+	9.34894	NA	intron (NR_046105, intron 1 of 4)	intron (NR_046105, intron 1 of 4)	1320	NR_046105	400765	Hs.451802	NM_001001688	HPRD:16937	MIR137HG	-	MIR137 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_89606	chr6	137365348	137366279	+	9.34894	NA	promoter-TSS (NM_001278722)	promoter-TSS (NM_001278722)	-364	NM_001278722	53832	Hs.445868	NM_014432	HPRD:05729	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_90385	chr6	161106608	161106748	+	9.34894	NA	Intergenic	L1PA3|LINE|L1	-16547	NM_000301	5340	Hs.143436	NM_000301	HPRD:01417	PLG	-	plasminogen	protein-coding
19-PTNLD28-TUMOR_peak_836	chr1	12268882	12269213	+	9.34894	NA	3' UTR (NM_001066, exon 10 of 10)	3' UTR (NM_001066, exon 10 of 10)	17277	NR_039775	100616438		NR_039775		MIR4632	-	microRNA 4632	ncRNA
19-PTNLD28-TUMOR_peak_72465	chr3	176868908	176869026	+	9.34894	NA	intron (NM_024665, intron 1 of 15)	MIR3|SINE|MIR	46081	NM_024665	79718	Hs.715026	NM_024665	HPRD:15476	TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_105367	chr9	112867578	112867678	+	9.34894	NA	intron (NM_001004065, intron 1 of 3)	intron (NM_001004065, intron 1 of 3)	-20153	NM_001136562	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|PRKA2	A kinase (PRKA) anchor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_29521	chr14	23871605	23871784	+	9.34894	NA	exon (NM_002471, exon 12 of 39)	exon (NM_002471, exon 12 of 39)	5792	NM_002471	4624	Hs.278432	NM_002471	HPRD:01171	MYH6	ASD3|CMD1EE|CMH14|MYHC|MYHCA|SSS3|alpha-MHC	myosin, heavy chain 6, cardiac muscle, alpha	protein-coding
19-PTNLD28-TUMOR_peak_2040	chr1	31977491	31977689	+	9.34894	NA	Intergenic	LTR10A|LTR|ERV1	5751	NR_034112	149086	Hs.729905	NR_034112	ENSG00000228682	LINC01225	-	long intergenic non-protein coding RNA 1225	pseudo
19-PTNLD28-TUMOR_peak_69612	chr3	107755960	107756163	+	9.34894	NA	Intergenic	Intergenic	53874	NM_198793	961	Hs.446414	NM_001777	HPRD:03017	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
19-PTNLD28-TUMOR_peak_55712	chr2	131320752	131321083	+	9.34894	NA	Intergenic	Intergenic	-7485	NR_033930	646743	Hs.634887	NR_033930		LOC646743	-	uncharacterized LOC646743	pseudo
19-PTNLD28-TUMOR_peak_22488	chr12	2722958	2723118	+	9.34894	NA	intron (NM_001129832, intron 30 of 47)	intron (NM_001129832, intron 30 of 47)	58348	NR_046579	100874235	Hs.667644	NR_046579		CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_40544	chr17	19145794	19145989	+	9.34894	NA	intron (NM_001102664, intron 1 of 7)	intron (NM_001102664, intron 1 of 7)	5201	NM_001102664	22905	Hs.743983	NM_014964	HPRD:06271	EPN2	EHB21	epsin 2	protein-coding
19-PTNLD28-TUMOR_peak_55152	chr2	114885049	114885224	+	9.34894	NA	Intergenic	Intergenic	-147575	NR_034130	100499194	Hs.662336	NR_034130		LOC100499194	-	uncharacterized LOC100499194	ncRNA
19-PTNLD28-TUMOR_peak_33496	chr15	48470258	48470606	+	9.34894	NA	exon (NM_001301210, exon 1 of 16)	exon (NM_001301210, exon 1 of 16)	126	NR_125408	50804	Hs.6638	NM_016132	HPRD:14794	MYEF2	HsT18564|MEF-2|MST156|MSTP156|myEF-2	myelin expression factor 2	protein-coding
19-PTNLD28-TUMOR_peak_84046	chr5	172662134	172662317	+	9.34894	NA	promoter-TSS (NM_004387)	promoter-TSS (NM_004387)	90	NM_001166175	1482	Hs.54473	NM_004387	HPRD:02787	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
19-PTNLD28-TUMOR_peak_102832	chr9	35070983	35071098	+	9.34529	NA	intron (NM_007126, intron 1 of 16)	L3b|LINE|CR1	1699	NM_007126	7415	Hs.529782	NM_007126	HPRD:03013	VCP	ALS14|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97	valosin containing protein	protein-coding
19-PTNLD28-TUMOR_peak_70401	chr3	125122854	125122955	+	9.34347	NA	Intergenic	Intergenic	-28706	NM_021964	7707	Hs.592591	NM_021964	HPRD:03540	ZNF148	BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
19-PTNLD28-TUMOR_peak_79736	chr5	43483467	43483595	+	9.34347	NA	intron (NM_022483, intron 1 of 2)	CpG	461	NM_022483	64417	Hs.732093	NM_022483	HPRD:07965	C5orf28	-	chromosome 5 open reading frame 28	protein-coding
19-PTNLD28-TUMOR_peak_1375	chr1	22352288	22352702	+	9.34347	NA	promoter-TSS (NR_110692)	promoter-TSS (NR_110692)	46	NR_110692	101928043	Hs.617422	NR_110692		LOC101928043	-	uncharacterized LOC101928043	ncRNA
19-PTNLD28-TUMOR_peak_1544	chr1	24616592	24616708	+	9.34347	NA	Intergenic	Intergenic	-29162	NM_198173	57822	Hs.657920	NM_021180	HPRD:12210	GRHL3	SOM|TFCP2L4|VWS2	grainyhead-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_94551	chr7	102290522	102290673	+	9.34134	NA	promoter-TSS (NM_001166339).2	promoter-TSS (NM_001166339).2	-175	NM_001166339	100310812	Hs.433879	NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
19-PTNLD28-TUMOR_peak_78684	chr5	1564289	1564441	+	9.34072	NA	Intergenic	Intergenic	30281	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_46325	chr18	74533730	74534181	+	9.33931	NA	intron (NR_040024, intron 1 of 2)	CpG	296	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	ncRNA
19-PTNLD28-TUMOR_peak_58515	chr2	220386945	220387044	+	9.33931	NA	intron (NM_182847, intron 1 of 8)	L3b|LINE|CR1	8102	NM_182847	55515	Hs.87469	NM_018674	HPRD:16231	ASIC4	ACCN4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding
19-PTNLD28-TUMOR_peak_101385	chr8	141249573	141249756	+	9.33931	NA	intron (NM_031466, intron 16 of 22)	intron (NM_031466, intron 16 of 22)	218197	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_52221	chr2	38674345	38674553	+	9.33931	NA	Intergenic	Intergenic	68433	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
19-PTNLD28-TUMOR_peak_61858	chr20	49346947	49347082	+	9.33920	NA	Intergenic	Intergenic	-1067	NM_032521	84612	Hs.589848	NM_032521	HPRD:18703	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_22828	chr12	7034657	7034837	+	9.33914	NA	intron (NM_001007026, intron 1 of 9)	intron (NM_001007026, intron 1 of 9)	1121	NM_001007026	1822	Hs.143766	NM_001940	HPRD:06311	ATN1	B37|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
19-PTNLD28-TUMOR_peak_49348	chr19	45414577	45414703	+	9.33639	NA	Intergenic	Intergenic	-3281	NM_001645	341	Hs.110675	NM_001645	HPRD:00131	APOC1	-	apolipoprotein C-I	protein-coding
19-PTNLD28-TUMOR_peak_32103	chr14	102276070	102276267	+	9.33639	NA	promoter-TSS (NM_002719)	promoter-TSS (NM_002719)	28	NM_178587	5527	Hs.368264	NM_002719	HPRD:03385	PPP2R5C	B56G|PR61G	protein phosphatase 2, regulatory subunit B', gamma	protein-coding
19-PTNLD28-TUMOR_peak_26200	chr12	109865969	109866066	+	9.33639	NA	intron (NM_001101421, intron 18 of 30)	intron (NM_001101421, intron 18 of 30)	39493	NM_001101421	283446	Hs.512008	NM_173597	HPRD:08227	MYO1H	-	myosin IH	protein-coding
19-PTNLD28-TUMOR_peak_92402	chr7	46792494	46792904	+	9.33639	NA	Intergenic	Intergenic	829043	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_5133	chr1	99835757	99835877	+	9.33639	NA	Intergenic	Intergenic	105969	NM_014839	9890	Hs.13245	NM_014839	HPRD:07425	LPPR4	LPR4|PHP1|PRG-1|PRG1	lipid phosphate phosphatase-related protein type 4	protein-coding
19-PTNLD28-TUMOR_peak_65501	chr22	38794289	38794496	+	9.33639	NA	intron (NR_002821, intron 1 of 4)	CpG	135	NM_001289912	102800317	Hs.720223	NM_001289912		CSNK1E	CKIe|LOC400927-CSNK1E	LOC400927-CSNK1E readthrough	protein-coding
19-PTNLD28-TUMOR_peak_47969	chr19	17966513	17966614	+	9.33255	NA	Intergenic	Intergenic	-4124	NM_000980	6142	Hs.337766	NM_000980	HPRD:16045	RPL18A	L18A	ribosomal protein L18a	protein-coding
19-PTNLD28-TUMOR_peak_8269	chr1	173446450	173446555	+	9.33255	NA	promoter-TSS (NM_004905)	promoter-TSS (NM_004905)	16	NM_004905	9588	Hs.120	NM_004905	HPRD:03817	PRDX6	1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29	peroxiredoxin 6	protein-coding
19-PTNLD28-TUMOR_peak_16229	chr10	129717940	129718113	+	9.33241	NA	intron (NM_006504, intron 1 of 20)	intron (NM_006504, intron 1 of 20)	12701	NM_006504	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_108596	chrX	67653195	67653454	+	9.33241	NA	promoter-TSS (NM_002547)	promoter-TSS (NM_002547)	-25	NM_002547	4983	Hs.128824	NM_002547	HPRD:02130	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
19-PTNLD28-TUMOR_peak_45582	chr18	45656216	45656447	+	9.33241	NA	intron (NM_001039360, intron 1 of 2)	intron (NM_001039360, intron 1 of 2)	7349	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_32047	chr14	100608703	100608874	+	9.33241	NA	intron (NM_016337, intron 13 of 13)	intron (NM_016337, intron 13 of 13)	17224	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_39206	chr16	85608736	85608873	+	9.33241	NA	Intergenic	Intergenic	-36225	NM_001134473	23199	Hs.461647	NM_014615	HPRD:11066	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_26791	chr12	122238449	122238586	+	9.33027	NA	intron (NR_002809, intron 4 of 6)	CpG	2873	NR_002809	338799	Hs.524804	NR_002809	ENSG00000212694	LINC01089	-	long intergenic non-protein coding RNA 1089	ncRNA
19-PTNLD28-TUMOR_peak_63463	chr21	38741000	38741207	+	9.32914	NA	intron (NM_101395, intron 1 of 12)	intron (NM_101395, intron 1 of 12)	1244	NM_101395	1859	Hs.368240	NM_001396	HPRD:09018	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	protein-coding
19-PTNLD28-TUMOR_peak_86539	chr6	30854284	30854435	+	9.32701	NA	intron (NM_013993, intron 2 of 18)	intron (NM_013993, intron 2 of 18)	1602	NM_001202523	780	Hs.631988	NM_001954	HPRD:02678	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_96895	chr8	2364265	2364435	+	9.32693	NA	Intergenic	Intergenic	116103	NR_125423	101927815	Hs.571467	NR_125423	ENSG00000249694	LOC101927815	-	uncharacterized LOC101927815	ncRNA
19-PTNLD28-TUMOR_peak_5503	chr1	111182780	111182897	+	9.32693	NA	Intergenic	L2b|LINE|L2	-8742	NM_001204269	3737	Hs.248139	NM_004974	HPRD:01443	KCNA2	HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_67783	chr3	43935710	43935886	+	9.32693	NA	Intergenic	Intergenic	203423	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_90364	chr6	160389852	160390011	+	9.32693	NA	promoter-TSS (NM_000876)	promoter-TSS (NM_000876)	-200	NM_000876	3482	Hs.487062	NM_000876	HPRD:00928	IGF2R	CD222|CIMPR|M6P-R|MPR1|MPRI	insulin-like growth factor 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_88375	chr6	75459551	75459770	+	9.32693	NA	Intergenic	Intergenic	455963	NM_080645	1303	Hs.101302	NM_004370	HPRD:00377	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_105657	chr9	117996418	117996625	+	9.32693	NA	intron (NM_017418, intron 2 of 7)	intron (NM_017418, intron 2 of 7)	92424	NM_017418	50514	Hs.148841	NM_017418	HPRD:16068	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_99075	chr8	68219622	68219781	+	9.32693	NA	intron (NM_006421, intron 1 of 38)	intron (NM_006421, intron 1 of 38)	36211	NM_006421	10565	Hs.656902	NM_006421	HPRD:09163	ARFGEF1	ARFGEP1|BIG1|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_1748	chr1	27469073	27469257	+	9.32693	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	12456	NR_046474	6548	Hs.91389	NM_003047	HPRD:00123	SLC9A1	APNH|NHE-1|NHE1|PPP1R143	solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_61177	chr20	42017475	42017595	+	9.32693	NA	Intergenic	Intergenic	-68969	NM_006275	6431	Hs.725336	NM_006275	HPRD:09054	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine/arginine-rich splicing factor 6	protein-coding
19-PTNLD28-TUMOR_peak_54769	chr2	109305378	109305508	+	9.32693	NA	Intergenic	Intergenic	-30494	NM_006267	5903	Hs.199561	NM_006267	HPRD:03111	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_9123	chr1	200305676	200305794	+	9.32693	NA	Intergenic	Intergenic	37185	NR_040064	554279	Hs.434694	NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
19-PTNLD28-TUMOR_peak_26113	chr12	108507043	108507174	+	9.32693	NA	Intergenic	Intergenic	-16403	NM_014653	9671	Hs.143591	NM_014653	HPRD:17196	WSCD2	-	WSC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83145	chr5	149218885	149219010	+	9.32693	NA	intron (NM_133263, intron 8 of 11)	intron (NM_133263, intron 8 of 11)	67444	NM_001172699	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_75074	chr4	41259627	41259855	+	9.32693	NA	promoter-TSS (NR_102709)	promoter-TSS (NR_102709)	843	NM_004181	7345	Hs.518731	NM_004181	HPRD:01877	UCHL1	HEL-117|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1	ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	protein-coding
19-PTNLD28-TUMOR_peak_100891	chr8	129661569	129661704	+	9.32693	NA	Intergenic	MIRc|SINE|MIR	-84711	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_97373	chr8	18244825	18244974	+	9.32693	NA	Intergenic	CpG	-3856	NM_000015	10	Hs.2	NM_000015	HPRD:02000	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_96400	chr7	151270259	151270381	+	9.32693	NA	intron (NM_001040633, intron 8 of 15)	AluJb|SINE|Alu	-53310	NM_005614	6009	Hs.283521	NM_005614	HPRD:03188	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding
19-PTNLD28-TUMOR_peak_34344	chr15	71629731	71629960	+	9.32693	NA	intron (NM_024817, intron 5 of 16)	intron (NM_024817, intron 5 of 16)	-148447	NR_120350	101929196	Hs.680472	NR_120348		LOC101929196	-	uncharacterized LOC101929196	ncRNA
19-PTNLD28-TUMOR_peak_15781	chr10	116335467	116335729	+	9.32693	NA	intron (NM_001003407, intron 2 of 21)	intron (NM_001003407, intron 2 of 21)	-48913	NM_006720	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51546	chr2	23818680	23819099	+	9.32693	NA	intron (NM_052920, intron 3 of 13)	intron (NM_052920, intron 3 of 13)	210591	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_21317	chr11	114794914	114795025	+	9.32693	NA	Intergenic	Intergenic	245769	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_19360	chr11	65880275	65880503	+	9.32693	NA	intron (NM_018026, intron 1 of 23)	L1ME2|LINE|L1	42565	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_7413	chr1	157460403	157460564	+	9.32693	NA	Intergenic	Intergenic	61827	NM_031281	83416	Hs.415950	NM_031281	HPRD:16169	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor-like 5	protein-coding
19-PTNLD28-TUMOR_peak_89659	chr6	138482782	138483104	+	9.32693	NA	promoter-TSS (NM_020340)	promoter-TSS (NM_020340)	-110	NM_020340	57221	Hs.194408	NM_020340	HPRD:13845	KIAA1244	A7322|ARFGEF3|BIG3|C6orf92|PPP1R33|dJ171N11.1	KIAA1244	protein-coding
19-PTNLD28-TUMOR_peak_85524	chr6	13860130	13860427	+	9.32693	NA	Intergenic	LTR12C|LTR|ERV1	-45486	NM_001031713	63933	Hs.214043	NM_022102	HPRD:12833	MCUR1	C6orf79|CCDC90A	mitochondrial calcium uniporter regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_29936	chr14	36527006	36527263	+	9.32693	NA	Intergenic	Intergenic	-12499	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_105849	chr9	123963423	123963903	+	9.32522	NA	intron (NM_016322, intron 1 of 7)	CpG	702	NM_016322	51552	Hs.371563	NM_016322	HPRD:06693	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_50591	chr19	59056231	59056404	+	9.32522	NA	exon (NM_005762, exon 1 of 17)	exon (NM_005762, exon 1 of 17)	481	NM_005762	10155	Hs.467408	NM_005762	HPRD:03445	TRIM28	KAP1|PPP1R157|RNF96|TF1B|TIF1B	tripartite motif containing 28	protein-coding
19-PTNLD28-TUMOR_peak_19780	chr11	71158446	71158583	+	9.32522	NA	intron (NM_001163817, intron 2 of 8)	intron (NM_001163817, intron 2 of 8)	963	NM_001163817	1717	Hs.503134	NM_001360	HPRD:04174	DHCR7	SLOS	7-dehydrocholesterol reductase	protein-coding
19-PTNLD28-TUMOR_peak_32053	chr14	100633322	100633437	+	9.32391	NA	Intergenic	AluY|SINE|Alu	-7367	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_43767	chr17	76493309	76493519	+	9.32391	NA	intron (NR_102401, intron 5 of 5)	intron (NR_102401, intron 5 of 5)	12422	NR_102401	100996295	Hs.615304	NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_7007	chr1	153681117	153681270	+	9.32391	NA	Intergenic	AluSc5|SINE|Alu	-18924	NR_107050	102466879		NR_107050		MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
19-PTNLD28-TUMOR_peak_30629	chr14	61123579	61124279	+	9.32391	NA	Intergenic	CpG	-7774	NM_005982	6495	Hs.633506	NM_005982		SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_31164	chr14	71822041	71822330	+	9.32391	NA	Intergenic	Intergenic	-42869	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_109113	chrX	107069012	107069129	+	9.32391	NA	promoter-TSS (NM_012216)	promoter-TSS (NM_012216)	-14	NM_012216	11043	Hs.12256	NM_012216		MID2	FXY2|MRX101|RNF60|TRIM1	midline 2	protein-coding
19-PTNLD28-TUMOR_peak_107098	chrUn_gl000219	142568	142697	+	9.32391	NA	Intergenic	Intergenic	-42990	NR_027436	283788	Hs.657131	NR_027436		LOC283788	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90083	chr6	152235739	152235889	+	9.32391	NA	intron (NM_001291230, intron 4 of 8)	MIRb|SINE|MIR	107000	NM_000125	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_47102	chr19	9084288	9084411	+	9.32391	NA	exon (NM_024690, exon 1 of 84)	exon (NM_024690, exon 1 of 84)	7669	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	mucin 16, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_101827	chr8	146176058	146176323	+	9.32391	NA	promoter-TSS (NM_006958)	promoter-TSS (NM_006958)	84	NM_006958	7564	Hs.493225	NM_006958	HPRD:03163	ZNF16	HZF1|KOX9	zinc finger protein 16	protein-coding
19-PTNLD28-TUMOR_peak_110001	chrX	153803424	153803610	+	9.32391	NA	Intergenic	Intergenic	4038	NR_027401	100132967		NR_027401		FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223, member A (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_67535	chr3	37493281	37493567	+	9.32391	NA	promoter-TSS (NM_002207)	promoter-TSS (NM_002207)	-389	NM_002207	3680	Hs.113157	NM_002207		ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin, alpha 9	protein-coding
19-PTNLD28-TUMOR_peak_62181	chr20	55004666	55004840	+	9.32391	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	17439	NM_001164114	57091	Hs.473144	NM_020356	HPRD:09842	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffolding protein family member 4	protein-coding
19-PTNLD28-TUMOR_peak_101086	chr8	133780882	133781106	+	9.32391	NA	Intergenic	Intergenic	-6610	NM_001277196	51105	Hs.304362	NM_016018	HPRD:15125	PHF20L1	TDRD20B	PHD finger protein 20-like 1	protein-coding
19-PTNLD28-TUMOR_peak_37095	chr16	29117901	29118136	+	9.32391	NA	intron (NR_003369, intron 15 of 16)	intron (NR_003369, intron 15 of 16)	31855	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_109204	chrX	112095227	112095337	+	9.32391	NA	Intergenic	Intergenic	-11239	NM_133265	154796	Hs.528051	NM_133265	HPRD:02327	AMOT	-	angiomotin	protein-coding
19-PTNLD28-TUMOR_peak_81301	chr5	98121155	98121299	+	9.32391	NA	intron (NM_001012761, intron 4 of 4)	intron (NM_001012761, intron 4 of 4)	-12439	NR_033932	503569	Hs.586188	NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_91539	chr7	21805386	21805540	+	9.32391	NA	intron (NM_001277115, intron 55 of 81)	intron (NM_001277115, intron 55 of 81)	180079	NM_018719	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_29161	chr13	113928632	113928828	+	9.32391	NA	Intergenic	Intergenic	11496	NR_107042	102465874		NR_107042		MIR8075	hsa-mir-8075	microRNA 8075	ncRNA
19-PTNLD28-TUMOR_peak_42944	chr17	63118036	63118168	+	9.32391	NA	Intergenic	Intergenic	-15354	NM_001165933	8787	Hs.664380	NM_003835	HPRD:04962	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
19-PTNLD28-TUMOR_peak_79153	chr5	17160708	17160886	+	9.32391	NA	intron (NR_027253, intron 2 of 2)	AluJo|SINE|Alu	-56135	NM_001271606	10409	Hs.201641	NM_006317	HPRD:08389	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102257	chr9	15306173	15306488	+	9.32246	NA	intron (NM_001168339, intron 1 of 19)	intron (NM_001168339, intron 1 of 19)	1028	NM_001168341	158219	Hs.563630	NM_152574	HPRD:10801	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
19-PTNLD28-TUMOR_peak_60437	chr20	30315292	30315627	+	9.32246	NA	Intergenic	AluJb|SINE|Alu	-4803	NM_001191	598	Hs.516966	NM_001191	HPRD:02497	BCL2L1	BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS	BCL2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_14630	chr10	82261473	82261663	+	9.32037	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	-29438	NR_120662	102723703	Hs.308615	NR_120662		LOC102723703	-	uncharacterized LOC102723703	ncRNA
19-PTNLD28-TUMOR_peak_103928	chr9	78577141	78577449	+	9.32026	NA	intron (NR_120409, intron 2 of 19)	intron (NR_120409, intron 2 of 19)	71735	NM_001190482	5125	Hs.368542	NM_006200	HPRD:08985	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
19-PTNLD28-TUMOR_peak_27865	chr13	37574385	37574637	+	9.31569	NA	promoter-TSS (NM_181503)	promoter-TSS (NM_181503)	-167	NM_181503	11340	Hs.294041	NM_181503	HPRD:09351	EXOSC8	CIP3|EAP2|OIP2|RRP43|Rrp43p|bA421P11.3|p9	exosome component 8	protein-coding
19-PTNLD28-TUMOR_peak_10579	chr1	227982576	227982847	+	9.31569	NA	Intergenic	Intergenic	-20707	NM_183062	339501	Hs.97604	NM_183062	HPRD:07134	PRSS38	MPN2	protease, serine, 38	protein-coding
19-PTNLD28-TUMOR_peak_106248	chr9	130922074	130922387	+	9.31569	NA	promoter-TSS (NM_024112)	promoter-TSS (NM_024112)	-309	NM_024112	79095	Hs.522412	NM_024112	HPRD:12946	C9orf16	EST00098	chromosome 9 open reading frame 16	protein-coding
19-PTNLD28-TUMOR_peak_31285	chr14	75079077	75079414	+	9.31569	NA	promoter-TSS (NM_000428)	promoter-TSS (NM_000428)	-211	NM_000428	4053	Hs.512776	NM_000428	HPRD:03650	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_65999	chr22	46773562	46773777	+	9.31504	NA	intron (NM_014246, intron 23 of 34)	intron (NM_014246, intron 23 of 34)	42371	NM_001282783	55687	Hs.439524	NM_018006	HPRD:15571	TRMU	MTO2|MTU1|TRMT|TRMT1|TRNT1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_32221	chr14	103987022	103987257	+	9.31504	NA	intron (NM_001823, intron 5 of 7)	CpG	2057	NM_001823	1152	Hs.173724	NM_001823	HPRD:00423	CKB	B-CK|BCK|CKBB|HEL-211|HEL-S-29	creatine kinase, brain	protein-coding
19-PTNLD28-TUMOR_peak_32223	chr14	103987578	103987763	+	9.31504	NA	exon (NM_001823, exon 5 of 8)	exon (NM_001823, exon 5 of 8)	1526	NM_001823	1152	Hs.173724	NM_001823	HPRD:00423	CKB	B-CK|BCK|CKBB|HEL-211|HEL-S-29	creatine kinase, brain	protein-coding
19-PTNLD28-TUMOR_peak_103751	chr9	72878465	72878632	+	9.31483	NA	intron (NM_015110, intron 1 of 24)	intron (NM_015110, intron 1 of 24)	4670	NM_015110	23137	Hs.534189	NM_015110	HPRD:10241	SMC5	SMC5L1	structural maintenance of chromosomes 5	protein-coding
19-PTNLD28-TUMOR_peak_14141	chr10	72433173	72433316	+	9.31126	NA	intron (NM_080722, intron 1 of 21)	intron (NM_080722, intron 1 of 21)	685	NM_080722	140766	Hs.352156	NM_080722	HPRD:06329	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif, 14	protein-coding
19-PTNLD28-TUMOR_peak_25103	chr12	67662225	67662367	+	9.31126	NA	promoter-TSS (NM_018448)	promoter-TSS (NM_018448)	-765	NM_018448	55832	Hs.546407	NM_018448		CAND1	TIP120|TIP120A	cullin-associated and neddylation-dissociated 1	protein-coding
19-PTNLD28-TUMOR_peak_96349	chr7	150823344	150823498	+	9.30924	NA	intron (NM_031946, intron 9 of 17)	intron (NM_031946, intron 9 of 17)	39622	NM_001042535	116988	Hs.647075	NM_031946	HPRD:16707	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_73404	chr3	194408499	194408777	+	9.30656	NA	exon (NM_153690, exon 1 of 1)	exon (NM_153690, exon 1 of 1)	2016	NM_153690	131583	Hs.435080	NM_153690	HPRD:13308	FAM43A	-	family with sequence similarity 43, member A	protein-coding
19-PTNLD28-TUMOR_peak_5057	chr1	95444107	95444222	+	9.30591	NA	Intergenic	Intergenic	50580	NR_033998	729970	Hs.297988	NR_033998	ENSG00000235501	LOC729970	-	hCG2028352-like	ncRNA
19-PTNLD28-TUMOR_peak_30312	chr14	52821971	52822105	+	9.30591	NA	Intergenic	Intergenic	41022	NM_000956	5732	Hs.2090	NM_000956	HPRD:08905	PTGER2	EP2	prostaglandin E receptor 2 (subtype EP2), 53kDa	protein-coding
19-PTNLD28-TUMOR_peak_84505	chr5	179334674	179335123	+	9.30591	NA	promoter-TSS (NM_015043)	promoter-TSS (NM_015043)	-42	NM_198868	23061	Hs.155829	NM_015043	HPRD:10015	TBC1D9B	-	TBC1 domain family, member 9B (with GRAM domain)	protein-coding
19-PTNLD28-TUMOR_peak_39577	chr17	818918	819168	+	9.30219	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	-51692	NM_001205319	64359	Hs.527989	NM_022463	HPRD:14858	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
19-PTNLD28-TUMOR_peak_102954	chr9	36772588	36772741	+	9.30219	NA	Intergenic	Intergenic	50932	NR_039686	100616289		NR_039686	miRBase:MI0016827	MIR4475	-	microRNA 4475	ncRNA
19-PTNLD28-TUMOR_peak_81734	chr5	118696721	118696851	+	9.30219	NA	intron (NM_001286813, intron 2 of 2)	intron (NM_001286813, intron 2 of 2)	5271	NM_014350	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_103801	chr9	74355326	74355427	+	9.30219	NA	intron (NM_013390, intron 4 of 23)	intron (NM_013390, intron 4 of 23)	28424	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_54223	chr2	96054982	96055165	+	9.30219	NA	Intergenic	CpG	-13375	NM_016044	51011	Hs.531247	NM_016044	HPRD:13287	FAHD2A	-	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_52228	chr2	38755159	38755290	+	9.30219	NA	Intergenic	Intergenic	-12342	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
19-PTNLD28-TUMOR_peak_100652	chr8	126187778	126187958	+	9.30219	NA	intron (NM_173685, intron 4 of 7)	intron (NM_173685, intron 4 of 7)	83785	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_80834	chr5	77066592	77066694	+	9.30219	NA	intron (NM_001297738, intron 1 of 2)	intron (NM_001297738, intron 1 of 2)	5542	NM_001297740	6902	Hs.291212	NM_004607	HPRD:18166	TBCA	-	tubulin folding cofactor A	protein-coding
19-PTNLD28-TUMOR_peak_58940	chr2	235000417	235000891	+	9.30219	NA	Intergenic	Intergenic	41308	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_67752	chr3	42948037	42948155	+	9.30219	NA	intron (NM_001134656, intron 1 of 3)	CpG	438	NM_001134656	389114	Hs.720173	NM_207404	HPRD:13516	ZNF662	-	zinc finger protein 662	protein-coding
19-PTNLD28-TUMOR_peak_67807	chr3	44626882	44626977	+	9.30219	NA	intron (NM_173658, intron 1 of 2)	L2a|LINE|L2	473	NM_173658	285349	Hs.733134	NM_173658		ZNF660	-	zinc finger protein 660	protein-coding
19-PTNLD28-TUMOR_peak_105941	chr9	124968604	124968760	+	9.30219	NA	intron (NM_199160, intron 8 of 8)	intron (NM_199160, intron 8 of 8)	15337	NM_001242335	26468	Hs.103137	NM_014368	HPRD:10498	LHX6	LHX6.1	LIM homeobox 6	protein-coding
19-PTNLD28-TUMOR_peak_1323	chr1	21625430	21625811	+	9.30219	NA	non-coding (NR_038404, exon 3 of 3)	non-coding (NR_038404, exon 3 of 3)	5837	NR_038404	100506801	Hs.663049	NR_038404	ENSG00000231105	LOC100506801	-	uncharacterized LOC100506801	ncRNA
19-PTNLD28-TUMOR_peak_65861	chr22	44759219	44759414	+	9.30219	NA	Intergenic	Intergenic	-50585	NM_001099294	85352	Hs.6829	NM_001099294	ENSG00000138944	KIAA1644	-	KIAA1644	protein-coding
19-PTNLD28-TUMOR_peak_79226	chr5	22212752	22212937	+	9.30219	NA	intron (NM_004061, intron 3 of 14)	intron (NM_004061, intron 3 of 14)	70383	NR_003921	5369	Hs.247975	NM_031887	HPRD:15940	PMCHL1	-	pro-melanin-concentrating hormone-like 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_23248	chr12	15362730	15362863	+	9.30219	NA	intron (NM_032918, intron 2 of 4)	MIRc|SINE|MIR	11615	NM_032918	85004	Hs.199487	NM_032918	HPRD:15238	RERG	-	RAS-like, estrogen-regulated, growth inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_1976	chr1	31086103	31086259	+	9.30219	NA	Intergenic	Intergenic	-105438	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93876	chr7	90258731	90258863	+	9.30219	NA	intron (NM_001287135, intron 2 of 14)	MER20B|DNA|hAT-Charlie	33121	NM_001287135	5218	Hs.258576	NM_012395	HPRD:15121	CDK14	PFTAIRE1|PFTK1	cyclin-dependent kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_64027	chr21	46568094	46568367	+	9.30219	NA	intron (NR_027673, intron 3 of 12)	intron (NR_027673, intron 3 of 12)	73737	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_84329	chr5	176980933	176981058	+	9.30207	NA	non-coding (NR_024019, exon 1 of 12)	non-coding (NR_024019, exon 1 of 12)	553	NR_024019	54540	Hs.484289	NM_019057	HPRD:07671	FAM193B	IRIZIO	family with sequence similarity 193, member B	protein-coding
19-PTNLD28-TUMOR_peak_58229	chr2	214016534	214016679	+	9.30127	NA	promoter-TSS (NM_001079526)	promoter-TSS (NM_001079526)	-273	NM_001079526	22807	Hs.604950	NM_016260	HPRD:05872	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2 (Helios)	protein-coding
19-PTNLD28-TUMOR_peak_49278	chr19	44261559	44261668	+	9.29971	NA	Intergenic	L1MC|LINE|L1	-2471	NM_019108	56006	Hs.466875	NM_019108	HPRD:07800	SMG9	C19orf61|F17127_1	SMG9 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_8058	chr1	168435596	168435749	+	9.29971	NA	Intergenic	Intergenic	-43778	NR_037851	100505918	Hs.568494	NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
19-PTNLD28-TUMOR_peak_45291	chr18	35144874	35145033	+	9.29971	NA	intron (NM_001025087, intron 1 of 12)	CpG	1047	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_1388	chr1	22555142	22555352	+	9.29971	NA	Intergenic	Intergenic	-85728	NM_030761	54361	Hs.25766	NM_030761	HPRD:04601	WNT4	SERKAL|WNT-4	wingless-type MMTV integration site family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_48732	chr19	36390154	36390290	+	9.29438	NA	intron (NM_139239, intron 1 of 11)	AluSx1|SINE|Alu	1330	NM_139239	84807	Hs.466531	NM_139239	HPRD:18140	NFKBID	IkappaBNS|TA-NFKBH	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta	protein-coding
19-PTNLD28-TUMOR_peak_22512	chr12	3068844	3069339	+	9.29438	NA	5' UTR (NM_201443, exon 1 of 11)	5' UTR (NM_201443, exon 1 of 11)	343	NM_201443	7004	Hs.94865	NM_003213	HPRD:03421	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_55077	chr2	113968853	113969024	+	9.29118	NA	Intergenic	Intergenic	-24166	NR_047570	654433	Hs.656660	NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48689	chr19	36036851	36036985	+	9.28918	NA	promoter-TSS (NR_038396)	promoter-TSS (NR_038396)	13	NR_038396	100506469	Hs.661816	NR_038396	ENSG00000236144	LOC100506469	-	uncharacterized LOC100506469	ncRNA
19-PTNLD28-TUMOR_peak_106167	chr9	130285096	130285230	+	9.28918	NA	intron (NM_001035534, intron 5 of 13)	L2a|LINE|L2	46233	NM_022833	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_55597	chr2	129071161	129071306	+	9.28918	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	4938	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_98393	chr8	41348757	41348943	+	9.28918	NA	intron (NM_001002296, intron 1 of 4)	intron (NM_001002296, intron 1 of 4)	677	NM_001002296	51125	Hs.654773	NM_016099	HPRD:13595	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
19-PTNLD28-TUMOR_peak_43401	chr17	73245574	73245704	+	9.28918	NA	intron (NM_001291641, intron 1 of 17)	intron (NM_001291641, intron 1 of 17)	12103	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_108273	chrX	48931582	48931787	+	9.28918	NA	promoter-TSS (NM_007213)	promoter-TSS (NM_007213)	20	NM_007213	11230	Hs.29595	NM_007213	HPRD:06596	PRAF2	-	PRA1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_93689	chr7	82072814	82073094	+	9.28918	NA	promoter-TSS (NM_000722)	promoter-TSS (NM_000722)	77	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_7668	chr1	161228414	161228753	+	9.28780	NA	promoter-TSS (NM_001102566)	promoter-TSS (NM_001102566)	66	NM_001102566	654790	Hs.433150	NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_21817	chr11	123458393	123458551	+	9.28780	NA	intron (NM_001286563, intron 4 of 20)	intron (NM_001286563, intron 4 of 20)	27502	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_55467	chr2	122820229	122820365	+	9.28261	NA	Intergenic	Intergenic	307176	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_100408	chr8	121662193	121662330	+	9.28261	NA	intron (NM_021021, intron 2 of 6)	L1PA2|LINE|L1	-111232	NR_125419	101927543	Hs.371902	NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
19-PTNLD28-TUMOR_peak_29438	chr14	23025967	23026328	+	9.28261	NA	Intergenic	Intergenic	31996	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_8559	chr1	180491343	180491583	+	9.28261	NA	Intergenic	Intergenic	-19441	NM_032360	84320	Hs.200051	NM_032360	HPRD:12416	ACBD6	-	acyl-CoA binding domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_65649	chr22	41131923	41132128	+	9.28261	NA	Intergenic	AluSx3|SINE|Alu	56843	NM_005297	2847	Hs.248122	NM_005297	HPRD:11874	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin-concentrating hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_69024	chr3	72532079	72532330	+	9.28261	NA	Intergenic	L3b|LINE|CR1	-36430	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_6472	chr1	147471192	147471512	+	9.28261	NA	intron (NR_111936, intron 7 of 9)	intron (NR_111936, intron 7 of 9)	15836	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_82494	chr5	138346593	138347141	+	9.28261	NA	intron (NM_022464, intron 7 of 9)	L1PA2|LINE|L1	-135810	NM_015564	26045	Hs.656653	NM_015564	HPRD:17454	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_47817	chr19	16539880	16540466	+	9.28261	NA	intron (NM_001258374, intron 7 of 23)	intron (NM_001258374, intron 7 of 23)	42650	NM_001258374	58513	Hs.654639	NM_021235	HPRD:09445	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
19-PTNLD28-TUMOR_peak_101492	chr8	142427807	142427938	+	9.28204	NA	Intergenic	CpG	-3616	NM_007079	11156	Hs.43666	NM_007079		PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
19-PTNLD28-TUMOR_peak_21196	chr11	112395200	112395354	+	9.28009	NA	intron (NR_120559, intron 2 of 2)	intron (NR_120559, intron 2 of 2)	31248	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_37187	chr16	29956084	29956312	+	9.27894	NA	Intergenic	L1MB5|LINE|L1	-17153	NM_194280	124446	Hs.460574	NM_194280	HPRD:18546	TMEM219	IGFBP-3R	transmembrane protein 219	protein-coding
19-PTNLD28-TUMOR_peak_6132	chr1	143672693	143672926	+	9.27716	NA	promoter-TSS (NR_106967).2	promoter-TSS (NR_106967).2	-112	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_86672	chr6	31831519	31831860	+	9.27716	NA	promoter-TSS (NM_000434).3	promoter-TSS (NM_000434).3	-980	NM_000434	4758	Hs.520037	NM_000434	HPRD:09751	NEU1	NANH|NEU|SIAL1	sialidase 1 (lysosomal sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_18937	chr11	61788265	61788418	+	9.27710	NA	Intergenic	Intergenic	-53209	NM_002032	2495	Hs.524910	NM_002032	HPRD:00615	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin, heavy polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_89371	chr6	126068050	126068229	+	9.27710	NA	Intergenic	Intergenic	-2593	NM_012259	23493	Hs.144287	NM_012259	HPRD:05243	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes-related family bHLH transcription factor with YRPW motif 2	protein-coding
19-PTNLD28-TUMOR_peak_29382	chr14	21566888	21567014	+	9.27710	NA	promoter-TSS (NM_001146683)	promoter-TSS (NM_001146683)	-143	NM_016423	51222	Hs.250493	NM_016423	HPRD:05435	ZNF219	ZFP219	zinc finger protein 219	protein-coding
19-PTNLD28-TUMOR_peak_9464	chr1	203619058	203619404	+	9.27710	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	23316	NM_001684	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_36085	chr16	6934107	6934345	+	9.27345	NA	intron (NM_001142334, intron 1 of 13)	intron (NM_001142334, intron 1 of 13)	110416	NM_001142334	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_12621	chr10	28881981	28882184	+	9.27345	NA	intron (NM_100486, intron 6 of 12)	intron (NM_100486, intron 6 of 12)	46757	NR_049851	100847088		NR_049851		MIR5586	-	microRNA 5586	ncRNA
19-PTNLD28-TUMOR_peak_74840	chr4	26065479	26065748	+	9.27345	NA	Intergenic	LTR12C|LTR|ERV1	149799	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_69412	chr3	99427070	99427352	+	9.27345	NA	intron (NM_001850, intron 2 of 4)	intron (NM_001850, intron 2 of 4)	69771	NM_001850	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_44819	chr18	19958755	19958922	+	9.27345	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	39040	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_803	chr1	11961578	11961715	+	9.27345	NA	Intergenic	AluJb|SINE|Alu	24839	NM_138346	90231	Hs.520094	NM_138346	HPRD:14576	KIAA2013	-	KIAA2013	protein-coding
19-PTNLD28-TUMOR_peak_47069	chr19	8524579	8524690	+	9.27345	NA	intron (NM_001297418, intron 3 of 13)	intron (NM_001297418, intron 3 of 13)	14831	NM_031203	4670	Hs.465808	NM_005968	HPRD:01188	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
19-PTNLD28-TUMOR_peak_66308	chr3	5655368	5655811	+	9.27345	NA	Intergenic	MER66D|LTR|ERV1	-363649	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_23849	chr12	43119790	43119892	+	9.27345	NA	Intergenic	Intergenic	-79541	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_102062	chr9	5152860	5153450	+	9.27345	NA	Intergenic	L1P3|LINE|L1	32463	NM_007179	11172	Hs.632648	NM_007179	HPRD:08401	INSL6	RIF1	insulin-like 6	protein-coding
19-PTNLD28-TUMOR_peak_102496	chr9	22354170	22354407	+	9.27345	NA	Intergenic	L1PA2|LINE|L1	-92552	NM_022160	63951	Hs.371976	NM_022160		DMRTA1	DMO|DMRT4	DMRT-like family A1	protein-coding
19-PTNLD28-TUMOR_peak_89149	chr6	112537960	112538487	+	9.27345	NA	intron (NM_001105206, intron 2 of 38)	MIRb|SINE|MIR	-19574	NR_121193	101927640	Hs.510007	NR_121193		LOC101927640	-	uncharacterized LOC101927640	ncRNA
19-PTNLD28-TUMOR_peak_60238	chr20	24060391	24060588	+	9.27345	NA	Intergenic	Intergenic	-91073	NM_178311	92086	Hs.355394	NM_080920	HPRD:17037	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
19-PTNLD28-TUMOR_peak_50314	chr19	55372974	55373082	+	9.27345	NA	intron (NM_006737, intron 6 of 8)	AluSx|SINE|Alu	11130	NM_006737	3812	Hs.645228	NM_006737	HPRD:10384	KIR3DL2	CD158K|NKAT-4|NKAT4|NKAT4B|p140	killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2	protein-coding
19-PTNLD28-TUMOR_peak_26774	chr12	122181051	122181229	+	9.27345	NA	intron (NM_001080825, intron 1 of 11)	intron (NM_001080825, intron 1 of 11)	30482	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
19-PTNLD28-TUMOR_peak_16370	chr10	134844388	134844498	+	9.27345	NA	Intergenic	CpG	55758	NR_111905	100128127	Hs.694139	NR_111905		LOC100128127	-	uncharacterized LOC100128127	ncRNA
19-PTNLD28-TUMOR_peak_36376	chr16	13065052	13065533	+	9.27345	NA	intron (NM_001145204, intron 2 of 4)	intron (NM_001145204, intron 2 of 4)	69815	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_26526	chr12	117674300	117674525	+	9.27345	NA	intron (NM_001204214, intron 19 of 27)	intron (NM_001204214, intron 19 of 27)	-46112	NM_015002	23014	Hs.740376	NM_015002	HPRD:09948	FBXO21	FBX21	F-box protein 21	protein-coding
19-PTNLD28-TUMOR_peak_44359	chr18	3703797	3703895	+	9.27345	NA	intron (NM_001242766, intron 4 of 10)	intron (NM_001242766, intron 4 of 10)	100111	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_1744	chr1	27446430	27446543	+	9.27345	NA	intron (NM_003047, intron 1 of 11)	AluSc|SINE|Alu	35135	NR_046474	6548	Hs.91389	NM_003047	HPRD:00123	SLC9A1	APNH|NHE-1|NHE1|PPP1R143	solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_15833	chr10	118429799	118429995	+	9.27345	NA	promoter-TSS (NM_144661)	promoter-TSS (NM_144661)	-416	NM_144661	143379	Hs.121347	NM_144661	HPRD:12592	C10orf82	-	chromosome 10 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_35157	chr15	90198761	90198901	+	9.27345	NA	promoter-TSS (NM_198525)	promoter-TSS (NM_198525)	-149	NM_198525	374654	Hs.513134	NM_198525	HPRD:14187	KIF7	ACLS|HLS2|JBTS12|UNQ340	kinesin family member 7	protein-coding
19-PTNLD28-TUMOR_peak_16570	chr11	1430488	1430808	+	9.27345	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	-1025	NM_001282218	9024	Hs.170819	NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_49906	chr19	50553702	50553840	+	9.27295	NA	promoter-TSS (NR_027257)	promoter-TSS (NR_027257)	-166	NR_027257	400710	Hs.628968	NM_001001687	HPRD:16927	FLJ26850	-	FLJ26850 protein	ncRNA
19-PTNLD28-TUMOR_peak_102896	chr9	35845900	35846065	+	9.27295	NA	exon (NM_016446, exon 8 of 11)	exon (NM_016446, exon 8 of 11)	-14289	NR_024006	92973	Hs.12509	NR_024006		LINC00950	-	long intergenic non-protein coding RNA 950	ncRNA
19-PTNLD28-TUMOR_peak_77978	chr4	169506813	169506906	+	9.27295	NA	intron (NM_016081, intron 2 of 20)	intron (NM_016081, intron 2 of 20)	-45909	NM_001166109	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_83874	chr5	170200072	170200199	+	9.27295	NA	Intergenic	L2c|LINE|L2	-10588	NM_001291985	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_86551	chr6	30931550	30931700	+	9.27295	NA	Intergenic	Intergenic	-19860	NM_001010909	394263	Hs.448277	NM_001010909	HPRD:16665	MUC21	C6orf205|KMQK697|MUC-21|bCX31G15.2	mucin 21, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_33359	chr15	44119056	44119241	+	9.27198	NA	promoter-TSS (NM_001167941)	promoter-TSS (NM_001167941)	36	NM_024908	79968	Hs.250154	NM_024908	HPRD:07804	WDR76	CDW14	WD repeat domain 76	protein-coding
19-PTNLD28-TUMOR_peak_32387	chr14	106165446	106165635	+	9.27198	NA	Intergenic	Intergenic	-26396	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12142	chr10	14595593	14595744	+	9.27198	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	18520	NM_001282699	83641	Hs.446315	NM_031453	HPRD:12575	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
19-PTNLD28-TUMOR_peak_12155	chr10	14995517	14995926	+	9.26977	NA	intron (NR_110297, intron 1 of 16)	CpG	710	NM_001033857	64421	Hs.655932	NM_022487	HPRD:05817	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
19-PTNLD28-TUMOR_peak_4895	chr1	93427145	93427247	+	9.26977	NA	promoter-TSS (NM_001006605)	promoter-TSS (NM_001006605)	-117	NM_001252270	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_22112	chr11	129565558	129565732	+	9.26346	NA	Intergenic	Intergenic	-78481	NR_120582	101929557	Hs.385785	NR_120582		LINC01395	-	long intergenic non-protein coding RNA 1395	ncRNA
19-PTNLD28-TUMOR_peak_106177	chr9	130348856	130348977	+	9.26294	NA	Intergenic	Intergenic	-7630	NM_001035534	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_7681	chr1	161391800	161392148	+	9.26294	NA	Intergenic	Intergenic	-54301	NM_001013625	257177	Hs.534593	NM_001013625	HPRD:13257	C1orf192	Flattop|Fltp	chromosome 1 open reading frame 192	protein-coding
19-PTNLD28-TUMOR_peak_50423	chr19	56156271	56156473	+	9.26294	NA	exon (NM_016535, exon 2 of 2)	exon (NM_016535, exon 2 of 2)	1386	NM_016535	51545	Hs.20768	NM_016535	HPRD:15858	ZNF581	-	zinc finger protein 581	protein-coding
19-PTNLD28-TUMOR_peak_10299	chr1	223685497	223685636	+	9.26294	NA	Intergenic	AluJb|SINE|Alu	118851	NM_152610	164127	Hs.192090	NM_152610	HPRD:08761	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
19-PTNLD28-TUMOR_peak_1264	chr1	20513717	20513901	+	9.26294	NA	promoter-TSS (NR_110078)	promoter-TSS (NR_110078)	-830	NR_110078	101928017	Hs.550803	NR_110078		UBXN10-AS1	-	UBXN10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_5488	chr1	110979371	110979556	+	9.26294	NA	Intergenic	Intergenic	-14325	NM_032414	84432	Hs.514793	NM_032414	HPRD:06946	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
19-PTNLD28-TUMOR_peak_34319	chr15	71145966	71146268	+	9.26294	NA	promoter-TSS (NM_001286679)	promoter-TSS (NM_001286679)	-320	NM_001286679	55323	Hs.416755	NM_018357	HPRD:10966	LARP6	ACHN	La ribonucleoprotein domain family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_92224	chr7	43798645	43798887	+	9.26294	NA	intron (NM_000712, intron 1 of 7)	CpG	494	NM_001253823	644	Hs.488143	NM_000712	HPRD:11229	BLVRA	BLVR|BVR|BVRA	biliverdin reductase A	protein-coding
19-PTNLD28-TUMOR_peak_94367	chr7	100529941	100530136	+	9.26294	NA	Intergenic	L1MEg|LINE|L1	-17014	NM_005960	4584	Hs.744422	NM_005960		MUC3A	MUC-3A|MUC3	mucin 3A, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_60671	chr20	33460667	33460824	+	9.26128	NA	promoter-TSS (NM_178026)	promoter-TSS (NM_178026)	-84	NM_178026	2686	Hs.433738	NM_178026	HPRD:07488	GGT7	D20S101|GGT4|GGTL3|GGTL5|dJ18C9.2	gamma-glutamyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_84933	chr6	3823376	3823623	+	9.26128	NA	Intergenic	Intergenic	-26133	NM_012135	26240	Hs.140944	NM_012135	HPRD:16883	FAM50B	D6S2654E|X5L	family with sequence similarity 50, member B	protein-coding
19-PTNLD28-TUMOR_peak_7054	chr1	154299215	154299481	+	9.26031	NA	promoter-TSS (NM_020452)	promoter-TSS (NM_020452)	-928	NM_020452	57198	Hs.435700	NM_020452	HPRD:05794	ATP8B2	ATPID	ATPase, aminophospholipid transporter, class I, type 8B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_91401	chr7	17411364	17411512	+	9.26013	NA	Intergenic	Intergenic	-3103	NR_110014	102659288	Hs.559488	NR_110014		LOC102659288	-	uncharacterized LOC102659288	ncRNA
19-PTNLD28-TUMOR_peak_31205	chr14	73429547	73429955	+	9.26013	NA	Intergenic	tRNA-Cys-TGY|tRNA|tRNA	23913	NM_178441	53349	Hs.335106	NM_021260	HPRD:12017	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger, FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_22175	chr11	130318273	130318692	+	9.26013	NA	promoter-TSS (NM_139055)	promoter-TSS (NM_139055)	-387	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_15059	chr10	98348836	98348978	+	9.26013	NA	Intergenic	L2a|LINE|L2	-2098	NM_020123	56889	Hs.500674	NM_020123	HPRD:18073	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
19-PTNLD28-TUMOR_peak_5336	chr1	109505396	109505531	+	9.25928	NA	intron (NM_015127, intron 1 of 11)	AluSz|SINE|Alu	658	NM_001048210	23155	Hs.658489	NM_015127	HPRD:17471	CLCC1	MCLC	chloride channel CLIC-like 1	protein-coding
19-PTNLD28-TUMOR_peak_89976	chr6	150615121	150615321	+	9.25607	NA	Intergenic	Intergenic	-74807	NM_203395	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_43137	chr17	66576578	66576675	+	9.25607	NA	intron (NM_017565, intron 1 of 10)	intron (NM_017565, intron 1 of 10)	20469	NM_001243746	54757	Hs.268874	NM_017565		FAM20A	AI1G|AIGFS|FP2747	family with sequence similarity 20, member A	protein-coding
19-PTNLD28-TUMOR_peak_67217	chr3	24730067	24730192	+	9.25607	NA	Intergenic	Intergenic	-167203	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_2975	chr1	43697910	43698029	+	9.25607	NA	intron (NM_001195831, intron 19 of 23)	intron (NM_001195831, intron 19 of 23)	-37696	NM_144626	128218	Hs.104476	NM_144626	HPRD:14457	TMEM125	-	transmembrane protein 125	protein-coding
19-PTNLD28-TUMOR_peak_40256	chr17	13539359	13539526	+	9.25607	NA	Intergenic	LTR24|LTR|ERV1	-34198	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_47813	chr19	16494193	16494394	+	9.25607	NA	intron (NM_001258374, intron 21 of 23)	intron (NM_001258374, intron 21 of 23)	58642	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_102925	chr9	36148740	36148900	+	9.25607	NA	intron (NM_001287010, intron 3 of 3)	intron (NM_001287010, intron 3 of 3)	12038	NM_001287013	152007	Hs.493819	NM_022343	HPRD:06187	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
19-PTNLD28-TUMOR_peak_55690	chr2	130998687	130998887	+	9.25607	NA	Intergenic	L2c|LINE|L2	-42753	NM_207312	112714	Hs.433336	NM_207312	HPRD:17288	TUBA3E	-	tubulin, alpha 3e	protein-coding
19-PTNLD28-TUMOR_peak_1152	chr1	17452390	17452519	+	9.25607	NA	Intergenic	Intergenic	-6506	NM_007365	11240	Hs.33455	NM_007365	HPRD:06396	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase, type II	protein-coding
19-PTNLD28-TUMOR_peak_85574	chr6	15073603	15073886	+	9.25607	NA	Intergenic	Intergenic	-172462	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_5465	chr1	110713793	110714000	+	9.25607	NA	intron (NM_001010898, intron 2 of 11)	intron (NM_001010898, intron 2 of 11)	20764	NM_001010898	388662	Hs.128382	NM_001010898	HPRD:18061	SLC6A17	NTT4	solute carrier family 6 (neutral amino acid transporter), member 17	protein-coding
19-PTNLD28-TUMOR_peak_100053	chr8	108508195	108508338	+	9.25607	NA	intron (NM_001199859, intron 1 of 8)	intron (NM_001199859, intron 1 of 8)	1988	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_54499	chr2	101364178	101364299	+	9.25607	NA	Intergenic	Intergenic	-72375	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_88573	chr6	84902874	84903199	+	9.25607	NA	intron (NM_001286206, intron 11 of 26)	intron (NM_001286206, intron 11 of 26)	34317	NM_001286206	22832	Hs.485865	NM_014895	HPRD:10796	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162kDa	protein-coding
19-PTNLD28-TUMOR_peak_45218	chr18	33340729	33340874	+	9.25607	NA	Intergenic	L1PA3|LINE|L1	106268	NM_020474	2589	Hs.514806	NM_020474	HPRD:03781	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_5053	chr1	95428058	95428166	+	9.25607	NA	intron (NR_033998, intron 3 of 3)	(T)n|Simple_repeat|Simple_repeat	34528	NR_033998	729970	Hs.297988	NR_033998	ENSG00000235501	LOC729970	-	hCG2028352-like	ncRNA
19-PTNLD28-TUMOR_peak_78997	chr5	13988094	13988221	+	9.25607	NA	Intergenic	Intergenic	-43568	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_65595	chr22	39970919	39971026	+	9.25607	NA	intron (NM_001003406, intron 1 of 35)	intron (NM_001003406, intron 1 of 35)	4214	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_60190	chr20	23084487	23084619	+	9.25607	NA	Intergenic	L1ME3A|LINE|L1	-17576	NM_012072	22918	Hs.97199	NM_012072	HPRD:00396	CD93	C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1	CD93 molecule	protein-coding
19-PTNLD28-TUMOR_peak_31733	chr14	92829699	92829808	+	9.25607	NA	intron (NM_153647, intron 3 of 17)	intron (NM_153647, intron 3 of 17)	39601	NM_153646	123041	Hs.385530	NM_153646		SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding
19-PTNLD28-TUMOR_peak_38563	chr16	70687788	70688027	+	9.25607	NA	intron (NM_001172771, intron 2 of 6)	intron (NM_001172771, intron 2 of 6)	30012	NM_001172772	146433	Hs.461214	NM_152456	HPRD:14582	IL34	C16orf77|IL-34	interleukin 34	protein-coding
19-PTNLD28-TUMOR_peak_77249	chr4	141057783	141057954	+	9.25607	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	17365	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_17129	chr11	11004867	11004957	+	9.25607	NA	Intergenic	Intergenic	125148	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_47959	chr19	17940917	17941057	+	9.25348	NA	exon (NM_000215, exon 23 of 24)	exon (NM_000215, exon 23 of 24)	-8604	NM_005543	3640	Hs.37062	NM_005543	HPRD:08854	INSL3	RLF|RLNL|ley-I-L	insulin-like 3 (Leydig cell)	protein-coding
19-PTNLD28-TUMOR_peak_91544	chr7	21984342	21984490	+	9.24993	NA	intron (NM_001127370, intron 1 of 10)	intron (NM_001127370, intron 1 of 10)	1126	NM_018719	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_101231	chr8	135845271	135845374	+	9.24509	NA	Intergenic	MIRb|SINE|MIR	-16856	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
19-PTNLD28-TUMOR_peak_48701	chr19	36134628	36134833	+	9.24463	NA	intron (NM_001300974, intron 4 of 5)	CpG-13521	2091	NM_001300974	2116	Hs.194061	NM_014209	HPRD:16871	ETV2	ER71|ETSRP71	ets variant 2	protein-coding
19-PTNLD28-TUMOR_peak_6201	chr1	144522007	144522121	+	9.24463	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	90655	NR_003242	767846	Hs.657186	NR_003242		PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_73617	chr3	196730733	196730866	+	9.24463	NA	non-coding (NR_038285, exon 2 of 4)	non-coding (NR_038285, exon 2 of 4)	1022	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MFI2-AS1	-	MFI2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80493	chr5	69793526	69793648	+	9.24333	NA	intron (NR_034021, intron 8 of 10)	intron (NR_034021, intron 8 of 10)	11259	NR_073404	441081	Hs.721548	NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109198	chrX	112062359	112062683	+	9.24177	NA	intron (NM_133265, intron 2 of 11)	intron (NM_133265, intron 2 of 11)	3833	NM_001113490	154796	Hs.528051	NM_133265	HPRD:02327	AMOT	-	angiomotin	protein-coding
19-PTNLD28-TUMOR_peak_87000	chr6	35300117	35300295	+	9.24177	NA	Intergenic	L1P2|LINE|L1	-10129	NM_001171820	5467	Hs.696032	NM_006238	HPRD:02679	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
19-PTNLD28-TUMOR_peak_8148	chr1	171220872	171221072	+	9.24177	NA	intron (NM_001282693, intron 1 of 8)	LTR22B|LTR|ERVK	3362	NM_001282694	2326	Hs.1424	NM_002021	HPRD:00631	FMO1	-	flavin containing monooxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_35854	chr16	2867066	2867355	+	9.24177	NA	promoter-TSS (NM_006799)	promoter-TSS (NM_006799)	46	NM_144957	10942	Hs.72026	NM_006799	HPRD:07082	PRSS21	ESP-1|ESP1|TEST1|TESTISIN	protease, serine, 21 (testisin)	protein-coding
19-PTNLD28-TUMOR_peak_53920	chr2	87268553	87268922	+	9.24177	NA	intron (NR_026846, intron 6 of 10)	MER52-int|LTR|ERV1	-19764	NM_002665	5342	Hs.652169	NM_002665		PLGLB2	PLGP1	plasminogen-like B2	protein-coding
19-PTNLD28-TUMOR_peak_12726	chr10	30637493	30638080	+	9.24177	NA	intron (NM_018109, intron 1 of 8)	intron (NM_018109, intron 1 of 8)	481	NM_018109	55149	Hs.173946	NM_018109	HPRD:15097	MTPAP	PAPD1|SPAX4	mitochondrial poly(A) polymerase	protein-coding
19-PTNLD28-TUMOR_peak_87838	chr6	47029362	47029602	+	9.24177	NA	Intergenic	Intergenic	-19400	NM_153840	266977	Hs.733762	NM_025048	HPRD:08661	GPR110	KPG_012|PGR19|hGPCR36	G protein-coupled receptor 110	protein-coding
19-PTNLD28-TUMOR_peak_45182	chr18	32382963	32383393	+	9.24177	NA	intron (NM_001128175, intron 5 of 11)	intron (NM_001128175, intron 5 of 11)	-14748	NM_001198943	1837	Hs.643454	NM_001390	HPRD:03141	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_59238	chr2	241262039	241262189	+	9.24177	NA	Intergenic	Intergenic	-113001	NM_002081	2817	Hs.328232	NM_002081	HPRD:02671	GPC1	glypican	glypican 1	protein-coding
19-PTNLD28-TUMOR_peak_97180	chr8	11725454	11725646	+	9.24177	NA	promoter-TSS (NM_147782)	promoter-TSS (NM_147782)	96	NM_147781	1508	Hs.520898	NM_001908	HPRD:00287	CTSB	APPS|CPSB	cathepsin B	protein-coding
19-PTNLD28-TUMOR_peak_34364	chr15	72409739	72410426	+	9.24177	NA	promoter-TSS (NM_145204)	promoter-TSS (NM_145204)	358	NM_006901	4649	Hs.513000	NM_006901	HPRD:05341	MYO9A	-	myosin IXA	protein-coding
19-PTNLD28-TUMOR_peak_38602	chr16	71392509	71392627	+	9.24177	NA	promoter-TSS (NM_001740)	promoter-TSS (NM_001740)	-48	NR_027910	794	Hs.106857	NM_001740	HPRD:00230	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
19-PTNLD28-TUMOR_peak_11398	chr1	244462718	244463226	+	9.24174	NA	Intergenic	Intergenic	-52965	NM_001276349	200159	Hs.442703	NM_001012970	HPRD:13168	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
19-PTNLD28-TUMOR_peak_42437	chr17	54757541	54757733	+	9.24174	NA	Intergenic	Intergenic	86577	NM_005450	9241	Hs.248201	NM_005450	HPRD:04291	NOG	SYM1|SYNS1	noggin	protein-coding
19-PTNLD28-TUMOR_peak_90568	chr6	168335213	168335544	+	9.24174	NA	intron (NM_001291964, intron 22 of 32)	intron (NM_001291964, intron 22 of 32)	42241	NM_001129895	100128124	Hs.448059	NM_001129895		HGC6.3	-	uncharacterized LOC100128124	protein-coding
19-PTNLD28-TUMOR_peak_38247	chr16	66729888	66730121	+	9.24174	NA	intron (NM_178818, intron 1 of 4)	CpG	606	NM_181521	146223	Hs.643961	NM_178818	HPRD:07435	CMTM4	CKLFSF4	CKLF-like MARVEL transmembrane domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_63678	chr21	43068996	43069112	+	9.23991	NA	Intergenic	Intergenic	-30408	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
19-PTNLD28-TUMOR_peak_47615	chr19	14359403	14359587	+	9.23991	NA	Intergenic	Intergenic	-42498	NM_014921	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_11982	chr10	10912852	10913033	+	9.23991	NA	Intergenic	Intergenic	-76065	NR_027082	207107	Hs.31562	NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95813	chr7	139938735	139938839	+	9.23991	NA	Intergenic	Intergenic	61726	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_48930	chr19	39184133	39184415	+	9.23991	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	46007	NM_004924	81	Hs.270291	NM_004924		ACTN4	ACTININ-4|FSGS|FSGS1	actinin, alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_96905	chr8	5044553	5044655	+	9.23991	NA	Intergenic	L1PA3|LINE|L1	-192276	NM_033225	64478	Hs.571466	NM_033225	HPRD:10523	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
19-PTNLD28-TUMOR_peak_87688	chr6	44265432	44265571	+	9.23991	NA	promoter-TSS (NM_182539)	promoter-TSS (NM_182539)	-43	NM_182539	202500	Hs.189183	NM_182539		TCTE1	D6S46|FAP155	t-complex-associated-testis-expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_94504	chr7	102073265	102073622	+	9.23830	NA	promoter-TSS (NM_032831)	promoter-TSS (NM_032831)	-534	NM_001126340	80228	Hs.363308	NM_032831	HPRD:09860	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
19-PTNLD28-TUMOR_peak_102415	chr9	20622119	20622216	+	9.23237	NA	promoter-TSS (NM_001286691)	promoter-TSS (NM_001286691)	-181	NM_001286691	4300	Hs.317248	NM_004529	HPRD:01163	MLLT3	AF9|YEATS3	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
19-PTNLD28-TUMOR_peak_78270	chr4	184739720	184739980	+	9.23237	NA	Intergenic	SVA_C|Other|Other	-86659	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_98159	chr8	37005669	37005806	+	9.23237	NA	Intergenic	Intergenic	345694	NR_121620	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_66440	chr3	9256465	9256595	+	9.23237	NA	intron (NM_001033117, intron 1 of 21)	intron (NM_001033117, intron 1 of 21)	-2049	NR_103443	100288831	Hs.694646	NR_103443		SRGAP3-AS3	-	SRGAP3 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_23988	chr12	47415209	47415349	+	9.23237	NA	Intergenic	Intergenic	-58107	NM_001281429	91523	Hs.560100	NM_138371	HPRD:17513	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_11856	chr10	6095867	6095993	+	9.23066	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	8403	NM_000417	3559	Hs.231367	NM_000417	HPRD:00986	IL2RA	CD25|IDDM10|IL2R|TCGFR|p55	interleukin 2 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_49918	chr19	50610381	50610541	+	9.23012	NA	promoter-TSS (NR_024228).5	promoter-TSS (NR_024228).5	-70	NR_024227	100169957	Hs.723094	NR_024227		SNAR-A6	-	small ILF3/NF90-associated RNA A6	snRNA
19-PTNLD28-TUMOR_peak_54478	chr2	100902185	100902491	+	9.22956	NA	intron (NM_198461, intron 11 of 11)	MLT1D|LTR|ERVL-MaLR	36857	NM_198461	164832	Hs.21380	NM_198461	HPRD:13503	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_14100	chr10	71951113	71951379	+	9.22956	NA	Intergenic	Intergenic	-20961	NM_001142648	56681	Hs.499960	NM_020150	HPRD:07608	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated, Ras related GTPase 1A	protein-coding
19-PTNLD28-TUMOR_peak_84411	chr5	177856053	177856333	+	9.22648	NA	intron (NM_173465, intron 2 of 28)	MIRb|SINE|MIR	161363	NM_173465	91522	Hs.660026	NM_173465	HPRD:16733	COL23A1	-	collagen, type XXIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_68201	chr3	50288767	50288924	+	9.22648	NA	intron (NM_001166425, intron 1 of 8)	intron (NM_001166425, intron 1 of 8)	4519	NM_001166425	2771	Hs.77269	NM_002070	HPRD:00764	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_37406	chr16	32290229	32290362	+	9.22648	NA	Intergenic	CpG	11007	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91206	chr7	6882244	6882516	+	9.22648	NA	Intergenic	HERVE-int|LTR|ERV1	-16454	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_36245	chr16	10713200	10713572	+	9.22648	NA	Intergenic	Intergenic	-38847	NM_001424	2013	Hs.531561	NM_001424	HPRD:11893	EMP2	NPHS10|XMP	epithelial membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_47858	chr19	16997244	16997574	+	9.22648	NA	Intergenic	Intergenic	-2417	NM_003950	9002	Hs.137574	NM_003950		F2RL3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_19810	chr11	71489716	71489848	+	9.22648	NA	Intergenic	AluSz|SINE|Alu	-8775	NM_018172	55199	Hs.567527	NM_018172	HPRD:13337	FAM86C1	FAM86C	family with sequence similarity 86, member C1	protein-coding
19-PTNLD28-TUMOR_peak_42976	chr17	63538836	63539057	+	9.22648	NA	intron (NM_004655, intron 3 of 10)	intron (NM_004655, intron 3 of 10)	18794	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_71209	chr3	138904538	138904760	+	9.22056	NA	Intergenic	Intergenic	47715	NR_027070	140464	Hs.721270	NR_027070		PISRT1	NCRNA00195	polled intersex syndrome regulated transcript 1 (non-protein coding RNA)	ncRNA
19-PTNLD28-TUMOR_peak_8950	chr1	189294789	189294883	+	9.22056	NA	Intergenic	L1PA4|LINE|L1	1151923	NM_199051	339479	Hs.65765	NM_199051	HPRD:16782	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	bone morphogenetic protein/retinoic acid inducible neural-specific 3	protein-coding
19-PTNLD28-TUMOR_peak_36908	chr16	24528355	24528608	+	9.22056	NA	Intergenic	Intergenic	-22427	NM_006910	5930	Hs.188553	NM_006910	HPRD:02964	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	retinoblastoma binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_85454	chr6	13044722	13044864	+	9.22056	NA	intron (NM_030948, intron 4 of 14)	MLT1K|LTR|ERVL-MaLR	251025	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_70348	chr3	124620584	124620712	+	9.22056	NA	Intergenic	MER5B|DNA|hAT-Charlie	-14504	NM_002213	3693	Hs.536663	NM_002213	HPRD:00949	ITGB5	-	integrin, beta 5	protein-coding
19-PTNLD28-TUMOR_peak_78327	chr4	185766597	185766938	+	9.22056	NA	non-coding (NR_037867, exon 2 of 2)	non-coding (NR_037867, exon 2 of 2)	1433	NR_037867	731424	Hs.427740	NR_037867	ENSG00000251230	LOC731424	-	uncharacterized LOC731424	ncRNA
19-PTNLD28-TUMOR_peak_98384	chr8	41107260	41107425	+	9.22056	NA	Intergenic	Intergenic	59648	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_89334	chr6	125033837	125033983	+	9.22056	NA	intron (NM_001300740, intron 3 of 5)	L1PA2|LINE|L1	-249781	NM_001286398	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_28571	chr13	79233165	79233368	+	9.22056	NA	promoter-TSS (NM_024546)	promoter-TSS (NM_024546)	48	NM_024546	79596	Hs.567576	NM_024546	HPRD:12619	RNF219	C13orf7	ring finger protein 219	protein-coding
19-PTNLD28-TUMOR_peak_65789	chr22	43366996	43367370	+	9.22056	NA	intron (NM_001184970, intron 1 of 10)	SVA_B|Other|Other	-11296	NM_001184971	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_9058	chr1	197676997	197677400	+	9.22056	NA	intron (NM_001300858, intron 4 of 15)	L1HS|LINE|L1	67425	NM_001300858	163486	Hs.125056	NM_019049	HPRD:13303	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_109820	chrX	151881783	151881936	+	9.22056	NA	Intergenic	Intergenic	-1216	NM_175743	4101	Hs.534597	NM_005361	HPRD:02165	MAGEA2	CT1.2|MAGE2|MAGEA2A	melanoma antigen family A, 2	protein-coding
19-PTNLD28-TUMOR_peak_11906	chr10	7273724	7274072	+	9.22056	NA	intron (NM_001018039, intron 9 of 20)	intron (NM_001018039, intron 9 of 20)	177405	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_87457	chr6	41814583	41814753	+	9.22056	NA	intron (NM_018561, intron 3 of 6)	L1MB2|LINE|L1	24707	NM_001286554	25862	Hs.593575	NM_018561	HPRD:10075	USP49	-	ubiquitin specific peptidase 49	protein-coding
19-PTNLD28-TUMOR_peak_92302	chr7	44635601	44635837	+	9.22056	NA	Intergenic	MER70B|LTR|ERVL	-10402	NM_001003941	4967	Hs.488181	NM_002541	HPRD:08938	OGDH	AKGDH|E1k|OGDC	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding
19-PTNLD28-TUMOR_peak_106205	chr9	130632284	130632405	+	9.22056	NA	promoter-TSS (NR_039819)	promoter-TSS (NR_039819)	-570	NR_039819	100616429		NR_039819		MIR4672	-	microRNA 4672	ncRNA
19-PTNLD28-TUMOR_peak_104426	chr9	91361425	91361565	+	9.22056	NA	promoter-TSS (NR_036252)	promoter-TSS (NR_036252)	-675	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_81840	chr5	123498999	123499107	+	9.22056	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	275160	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_90584	chr6	168648311	168648406	+	9.22056	NA	intron (NR_110870, intron 1 of 4)	intron (NR_110870, intron 1 of 4)	4740	NR_110870	101929420	Hs.571211	NR_110870	ENSG00000234647	LOC101929420	-	uncharacterized LOC101929420	ncRNA
19-PTNLD28-TUMOR_peak_33887	chr15	63127248	63127834	+	9.22056	NA	intron (NM_015059, intron 52 of 55)	intron (NM_015059, intron 52 of 55)	11385	NR_029709	406965		NR_029709		MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190	microRNA 190a	ncRNA
19-PTNLD28-TUMOR_peak_46696	chr19	3028277	3028419	+	9.22056	NA	exon (NM_001144761, exon 4 of 20)	exon (NM_001144761, exon 4 of 20)	817	NM_003260	7089	Hs.332173	NM_003260	HPRD:03025	TLE2	ESG|ESG2|GRG2	transducin-like enhancer of split 2	protein-coding
19-PTNLD28-TUMOR_peak_70925	chr3	133293184	133293500	+	9.21724	NA	promoter-TSS (NM_001282765)	promoter-TSS (NM_001282765)	64	NM_001282765	55573	Hs.518265	NM_017548	HPRD:13627	CDV3	H41	CDV3 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_49004	chr19	39897511	39897707	+	9.21616	NA	intron (NM_003407, intron 1 of 1)	CpG	122	NM_003407	7538	Hs.534052	NM_003407	HPRD:01835	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
19-PTNLD28-TUMOR_peak_97590	chr8	22419892	22419982	+	9.21504	NA	intron (NM_005775, intron 7 of 20)	intron (NM_005775, intron 7 of 20)	-3242	NM_001018003	10174	Hs.528572	NM_005775	HPRD:11535	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_41782	chr17	43224316	43224465	+	9.21380	NA	promoter-TSS (NM_006460)	promoter-TSS (NM_006460)	-294	NM_006460	10614	Hs.586945	NM_006460	HPRD:09544	HEXIM1	CLP1|EDG1|HIS1|MAQ1	hexamethylene bis-acetamide inducible 1	protein-coding
19-PTNLD28-TUMOR_peak_18013	chr11	34645726	34645868	+	9.21229	NA	intron (NM_001206615, intron 1 of 7)	intron (NM_001206615, intron 1 of 7)	3209	NM_001206615	26298	Hs.653859	NM_012153		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
19-PTNLD28-TUMOR_peak_87411	chr6	41339745	41340087	+	9.21229	NA	Intergenic	CpG	36388	NM_001199510	9436	Hs.194721	NM_004828	HPRD:05168	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_83097	chr5	148738059	148738156	+	9.21229	NA	intron (NM_001301057, intron 1 of 5)	intron (NM_001301057, intron 1 of 5)	537	NM_001301057	78991	Hs.644397	NM_024028	HPRD:14552	PCYOX1L	-	prenylcysteine oxidase 1 like	protein-coding
19-PTNLD28-TUMOR_peak_101755	chr8	145596588	145596876	+	9.21229	NA	promoter-TSS (NM_174922)	promoter-TSS (NM_174922)	-972	NM_174922	203054	Hs.283374	NM_174922	HPRD:12427	ADCK5	-	aarF domain containing kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_51844	chr2	28850692	28850929	+	9.21169	NA	intron (NM_001170585, intron 50 of 56)	intron (NM_001170585, intron 50 of 56)	-123804	NM_206876	5500	Hs.702907	NM_002709	HPRD:11792	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1, catalytic subunit, beta isozyme	protein-coding
19-PTNLD28-TUMOR_peak_9142	chr1	200623498	200623689	+	9.21169	NA	intron (NM_001031725, intron 4 of 7)	MER5A1|DNA|hAT-Charlie	-15042	NR_110787	101929224	Hs.639369	NR_110787	ENSG00000260088	LOC101929224	-	uncharacterized LOC101929224	ncRNA
19-PTNLD28-TUMOR_peak_9779	chr1	206899764	206899864	+	9.21169	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	41449	NM_004759	9261	Hs.643566	NM_004759	HPRD:11882	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_22538	chr12	3309449	3309721	+	9.21169	NA	intron (NM_006675, intron 2 of 8)	CpG	123064	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_4762	chr1	89737381	89737545	+	9.21169	NA	intron (NM_052942, intron 1 of 11)	intron (NM_052942, intron 1 of 11)	1081	NM_052942	115362	Hs.513726	NM_052942	HPRD:13571	GBP5	GBP-5	guanylate binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_57428	chr2	190407406	190407542	+	9.21042	NA	Intergenic	Intergenic	38063	NM_014585	30061	Hs.643005	NM_014585	HPRD:05229	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_42308	chr17	49197710	49198131	+	9.21042	NA	exon (NM_003971, exon 1 of 29)	exon (NM_003971, exon 1 of 29)	306	NM_001130528	9043	Hs.463439	NM_003971	HPRD:10398	SPAG9	CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
19-PTNLD28-TUMOR_peak_73363	chr3	194064793	194064911	+	9.21004	NA	intron (NM_001080513, intron 1 of 1)	intron (NM_001080513, intron 1 of 1)	7205	NM_001080513	1370	Hs.528368	NM_001309	HPRD:11928	CPN2	ACBP	carboxypeptidase N, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_107585	chrX	13450607	13450750	+	9.21004	NA	Intergenic	Intergenic	97318	NR_045260	100133123	Hs.449499	NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
19-PTNLD28-TUMOR_peak_87760	chr6	45698089	45698322	+	9.21004	NA	Intergenic	Intergenic	207129	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_5934	chr1	119506237	119506404	+	9.21004	NA	intron (NM_152380, intron 1 of 7)	intron (NM_152380, intron 1 of 7)	25859	NM_152380	6913	Hs.146196	NM_152380	HPRD:16035	TBX15	TBX14	T-box 15	protein-coding
19-PTNLD28-TUMOR_peak_10002	chr1	212845036	212845295	+	9.21004	NA	Intergenic	Intergenic	28162	NM_018664	55509	Hs.62919	NM_018664	HPRD:18081	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper transcription factor, ATF-like 3	protein-coding
19-PTNLD28-TUMOR_peak_106900	chr9	141066196	141066366	+	9.21004	NA	intron (NR_027156, intron 1 of 4)	MER41D|LTR|ERV1	21716	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	tubulin, beta pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_19797	chr11	71376139	71376263	+	9.21004	NA	Intergenic	Intergenic	-82280	NM_001005405	440051	Hs.679617	NM_001005405	HPRD:17248	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
19-PTNLD28-TUMOR_peak_90577	chr6	168461217	168461370	+	9.21004	NA	intron (NM_001122841, intron 9 of 10)	intron (NM_001122841, intron 9 of 10)	15253	NM_001122841	79981	Hs.266746	NM_024919	HPRD:10997	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59082	chr2	238341440	238341790	+	9.21004	NA	Intergenic	Intergenic	-18765	NM_057166	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_55269	chr2	119762747	119762951	+	9.21004	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	63104	NM_006770	8685	Hs.67726	NM_006770	HPRD:05337	MARCO	SCARA2	macrophage receptor with collagenous structure	protein-coding
19-PTNLD28-TUMOR_peak_32790	chr15	30228035	30228130	+	9.21004	NA	intron (NM_001301025, intron 2 of 28)	intron (NM_001301025, intron 2 of 28)	32920	NM_001301025	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_3441	chr1	50814443	50814561	+	9.21004	NA	Intergenic	Intergenic	74617	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
19-PTNLD28-TUMOR_peak_52170	chr2	37962787	37962876	+	9.21004	NA	Intergenic	Intergenic	-63153	NM_001270436	10602	Hs.369574	NM_006449	HPRD:09364	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
19-PTNLD28-TUMOR_peak_37956	chr16	56378100	56378213	+	9.21004	NA	3' UTR (NM_138736, exon 8 of 8)	3' UTR (NM_138736, exon 8 of 8)	81294	NM_001144	267	Hs.295137	NM_001144	HPRD:09130	AMFR	GP78|RNF45	autocrine motility factor receptor, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_5778	chr1	116594968	116595126	+	9.21004	NA	intron (NM_018420, intron 8 of 11)	L1PA3|LINE|L1	-59329	NM_152367	126868	Hs.376194	NM_152367	HPRD:08245	MAB21L3	C1orf161	mab-21-like 3 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_77990	chr4	169717688	169717799	+	9.21004	NA	intron (NM_016081, intron 10 of 20)	L2b|LINE|L2	-35413	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_33076	chr15	37348745	37348856	+	9.21004	NA	intron (NM_001220482, intron 8 of 12)	intron (NM_001220482, intron 8 of 12)	41762	NM_172315	4212	Hs.510989	NM_002399	HPRD:03443	MEIS2	HsT18361|MRG1	Meis homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_64397	chr22	19982565	19982715	+	9.21004	NA	intron (NM_001670, intron 2 of 19)	intron (NM_001670, intron 2 of 19)	21669	NM_001670	421	Hs.713616	NM_001670	HPRD:03778	ARVCF	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding
19-PTNLD28-TUMOR_peak_47613	chr19	14342769	14342957	+	9.21004	NA	Intergenic	AluSx1|SINE|Alu	-25866	NM_014921	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_34830	chr15	82287673	82287796	+	9.21004	NA	Intergenic	L1PA2|LINE|L1	50750	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_102725	chr9	33624099	33624234	+	9.21004	NA	promoter-TSS (NR_003573)	promoter-TSS (NR_003573)	-57	NR_003573	304	Hs.534301	NR_003573	ENSG00000231991	ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_37620	chr16	46893870	46894018	+	9.21004	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-24364	NM_133443	84706	Hs.460693	NM_133443	HPRD:06307	GPT2	ALT2	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding
19-PTNLD28-TUMOR_peak_1486	chr1	24104687	24104801	+	9.21004	NA	promoter-TSS (NR_038280)	promoter-TSS (NR_038280)	43	NR_038280	100506963	Hs.592549	NR_038280	ENSG00000236810	TCEB3-AS1	-	TCEB3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25292	chr12	72057078	72057244	+	9.20986	NA	promoter-TSS (NM_031435)	promoter-TSS (NM_031435)	-516	NM_031435	83591	Hs.245798	NM_031435	HPRD:10896	THAP2	-	THAP domain containing, apoptosis associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86275	chr6	27840949	27841245	+	9.20863	NA	promoter-TSS (NM_003533)	promoter-TSS (NM_003533)	192	NM_003546	8368	Hs.533295	NM_003546	HPRD:11922	HIST1H4L	H4.k|H4/k|H4FK	histone cluster 1, H4l	protein-coding
19-PTNLD28-TUMOR_peak_83205	chr5	149886875	149886971	+	9.20863	NA	promoter-TSS (NM_001543)	promoter-TSS (NM_001543)	-751	NM_001543	3340	Hs.222055	NM_001543	HPRD:02912	NDST1	HSST|NST1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding
19-PTNLD28-TUMOR_peak_86341	chr6	28806222	28806439	+	9.20863	NA	Intergenic	Intergenic	25124	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_18896	chr11	61501034	61501135	+	9.20863	NA	intron (NM_006133, intron 9 of 19)	intron (NM_006133, intron 9 of 19)	-19037	NM_001127392	745	Hs.473109	NM_013279	HPRD:12213	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
19-PTNLD28-TUMOR_peak_35611	chr16	441935	442183	+	9.20719	NA	non-coding (NR_024453, exon 3 of 3)	non-coding (NR_024453, exon 3 of 3)	-4696	NM_001286436	4833	Hs.9235	NM_005009	HPRD:03489	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_97776	chr8	26323202	26323502	+	9.20719	NA	Intergenic	Intergenic	48131	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_59455	chr20	1716730	1716898	+	9.20719	NA	Intergenic	Intergenic	43578	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102811	chr9	34701385	34701729	+	9.20719	NA	Intergenic	CpG	8607	NM_002989	6366	Hs.57907	NM_002989	HPRD:04113	CCL21	6Ckine|CKb9|ECL|SCYA21|SLC|TCA4	chemokine (C-C motif) ligand 21	protein-coding
19-PTNLD28-TUMOR_peak_88336	chr6	74289706	74289985	+	9.20606	NA	Intergenic	Intergenic	-59090	NM_001402	1915	Hs.535192	NM_001402	HPRD:00559	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_3081	chr1	44683468	44683653	+	9.20606	NA	intron (NM_001034024, intron 4 of 10)	intron (NM_001034024, intron 4 of 10)	4435	NM_019100	55929	Hs.8008	NM_019100	HPRD:05465	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40581	chr17	19654178	19654324	+	9.20513	NA	Intergenic	L2b|LINE|L2	-2505	NM_000691	218	Hs.531682	NM_000691	HPRD:00004	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_93585	chr7	77648013	77648134	+	9.20513	NA	3' UTR (NM_012301, exon 22 of 22)	3' UTR (NM_012301, exon 22 of 22)	178626	NM_001127357	57157	Hs.203965	NM_020432	HPRD:15130	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_69595	chr3	107647053	107647201	+	9.20513	NA	non-coding (NR_015394, exon 3 of 3)	non-coding (NR_015394, exon 3 of 3)	45075	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
19-PTNLD28-TUMOR_peak_97225	chr8	12345493	12345625	+	9.20154	NA	intron (NR_040092, intron 4 of 5)	HERVE-int|LTR|ERV1	51037	NR_040092	100506990	Hs.656893	NR_040091		LOC100506990	-	uncharacterized LOC100506990	ncRNA
19-PTNLD28-TUMOR_peak_45329	chr18	37379082	37379248	+	9.20154	NA	Intergenic	MER61-int|LTR|ERV1	-47206	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	ncRNA
19-PTNLD28-TUMOR_peak_6842	chr1	151986195	151986364	+	9.20154	NA	Intergenic	Intergenic	-4475	NR_103561	441908	Hs.656557	NR_103561		NBPF18P	-	neuroblastoma breakpoint family, member 18, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_4747	chr1	89467325	89467474	+	9.20154	NA	Intergenic	L1MC5|LINE|L1	-8756	NM_001008661	56267	Hs.481898	NM_001008661	HPRD:13752	CCBL2	KAT3|KATIII	cysteine conjugate-beta lyase 2	protein-coding
19-PTNLD28-TUMOR_peak_78351	chr4	186163853	186164142	+	9.20154	NA	intron (NM_031953, intron 1 of 18)	MER21A|LTR|ERVL	32713	NM_031953	83891	Hs.369091	NM_031953	HPRD:15414	SNX25	SBBI31	sorting nexin 25	protein-coding
19-PTNLD28-TUMOR_peak_30532	chr14	58400144	58400309	+	9.20154	NA	Intergenic	Intergenic	-67634	NM_001206920	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35, member F4	protein-coding
19-PTNLD28-TUMOR_peak_42066	chr17	46671316	46671486	+	9.20154	NA	promoter-TSS (NM_002147)	promoter-TSS (NM_002147)	-298	NM_002147	3215	Hs.654456	NM_002147	HPRD:00848	HOXB5	HHO.C10|HOX2|HOX2A|HU-1|Hox2.1	homeobox B5	protein-coding
19-PTNLD28-TUMOR_peak_98271	chr8	38429168	38429368	+	9.20154	NA	Intergenic	Intergenic	29507	NR_003129	286140	Hs.512071	NR_003129		RNF5P1	-	ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_41967	chr17	45632047	45632289	+	9.20154	NA	intron (NM_006310, intron 2 of 22)	Tigger7|DNA|TcMar-Tigger	23724	NM_006310	9520	Hs.443837	NM_006310	HPRD:07366	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
19-PTNLD28-TUMOR_peak_334	chr1	6067482	6067662	+	9.20154	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-15039	NM_001291593	261734	Hs.462348	NM_015102	HPRD:06238	NPHP4	POC10|SLSN4	nephronophthisis 4	protein-coding
19-PTNLD28-TUMOR_peak_72071	chr3	159646508	159646803	+	9.20154	NA	intron (NR_108088, intron 9 of 9)	intron (NR_108088, intron 9 of 9)	-59968	NM_000882	3592	Hs.673	NM_000882	HPRD:01193	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
19-PTNLD28-TUMOR_peak_3988	chr1	62617748	62617912	+	9.20154	NA	intron (NM_176877, intron 42 of 42)	L2c|LINE|L2	-42644	NM_001164835	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_7578	chr1	160068367	160068594	+	9.20063	NA	promoter-TSS (NM_052868)	promoter-TSS (NM_052868)	-41	NM_052868	93185	Hs.332012	NM_052868	HPRD:09438	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_2996	chr1	43832456	43833049	+	9.19702	NA	intron (NR_046117, intron 1 of 7)	intron (NR_046117, intron 1 of 7)	657	NM_001256399	64834	Hs.25597	NM_022821	HPRD:10935	ELOVL1	Ssc1	ELOVL fatty acid elongase 1	protein-coding
19-PTNLD28-TUMOR_peak_24781	chr12	57916573	57916695	+	9.19670	NA	promoter-TSS (NM_052897)	promoter-TSS (NM_052897)	-25	NM_052897	114785	Hs.524523	NM_052897	HPRD:11296	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
19-PTNLD28-TUMOR_peak_95276	chr7	129932536	129932675	+	9.19670	NA	promoter-TSS (NM_001163446)	promoter-TSS (NM_001163446)	-369	NM_001163446	51200	Hs.93764	NM_016352	HPRD:07405	CPA4	CPA3	carboxypeptidase A4	protein-coding
19-PTNLD28-TUMOR_peak_20461	chr11	86451703	86451832	+	9.19083	NA	Intergenic	Intergenic	-50334	NM_001293180	11098	Hs.25338	NM_007173	HPRD:07149	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine, 23	protein-coding
19-PTNLD28-TUMOR_peak_90843	chr7	1571920	1572051	+	9.19041	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	1617	NM_002360	7975	Hs.520612	NM_002360	HPRD:02561	MAFK	NFE2U|P18	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K	protein-coding
19-PTNLD28-TUMOR_peak_109627	chrX	139015112	139015508	+	9.19030	NA	Intergenic	CpG	-8920	NR_030230	574508		NR_030230		MIR505	MIRN505|hsa-mir-505	microRNA 505	ncRNA
19-PTNLD28-TUMOR_peak_13454	chr10	48572915	48573051	+	9.19030	NA	Intergenic	Intergenic	-133845	NM_004962	2662	Hs.2171	NM_004962	HPRD:03218	GDF10	BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
19-PTNLD28-TUMOR_peak_33547	chr15	50979229	50979377	+	9.19030	NA	promoter-TSS (NM_017672)	promoter-TSS (NM_017672)	-291	NM_001301212	54822	Hs.512894	NM_017672	HPRD:10418	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding
19-PTNLD28-TUMOR_peak_6884	chr1	152434147	152434291	+	9.19030	NA	Intergenic	Intergenic	-47469	NM_016190	49860	Hs.242057	NM_016190	HPRD:12720	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
19-PTNLD28-TUMOR_peak_11920	chr10	7567511	7567640	+	9.19030	NA	Intergenic	Intergenic	94061	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_76212	chr4	89204905	89205404	+	9.18944	NA	intron (NM_152542, intron 1 of 6)	CpG	829	NM_152542	152926	Hs.43744	NM_152542	HPRD:15167	PPM1K	BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent, 1K	protein-coding
19-PTNLD28-TUMOR_peak_43210	chr17	70355428	70355688	+	9.18706	NA	Intergenic	Intergenic	233385	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_39985	chr17	7380859	7381079	+	9.18706	NA	intron (NM_020899, intron 1 of 3)	intron (NM_020899, intron 1 of 3)	1975	NM_001128833	57659	Hs.35096	NM_020899	HPRD:11693	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_18661	chr11	57366375	57366501	+	9.18706	NA	intron (NM_001032295, intron 1 of 6)	intron (NM_001032295, intron 1 of 6)	733	NM_001032295	710	Hs.384598	NM_000062	HPRD:06033	SERPING1	C1IN|C1INH|C1NH|HAE1|HAE2	serpin peptidase inhibitor, clade G (C1 inhibitor), member 1	protein-coding
19-PTNLD28-TUMOR_peak_74292	chr4	7966768	7967300	+	9.18572	NA	TTS (NM_001130087)	TTS (NM_001130087)	-25381	NM_001134647	60312	Hs.529369	NM_021638	HPRD:09747	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_95223	chr7	129470326	129470449	+	9.18450	NA	TTS (NM_001202498)	TTS (NM_001202498)	-55533	NR_029615	406959		NR_029615	miRBase:MI0000273	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
19-PTNLD28-TUMOR_peak_31781	chr14	93510575	93510740	+	9.18222	NA	intron (NM_001142593, intron 3 of 10)	intron (NM_001142593, intron 3 of 10)	-23140	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93266	chr7	73621013	73621300	+	9.18197	NA	Intergenic	Intergenic	-2931	NM_032464	7462	Hs.741249	NM_014146	HPRD:09304	LAT2	LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_94414	chr7	100965431	100965668	+	9.18197	NA	promoter-TSS (NM_001130821)	promoter-TSS (NM_001130821)	-445	NM_001130822	64792	Hs.389104	NM_022777		IFT22	RABL5	intraflagellar transport 22	protein-coding
19-PTNLD28-TUMOR_peak_93920	chr7	91874840	91874997	+	9.18197	NA	promoter-TSS (NM_019004)	promoter-TSS (NM_019004)	294	NM_004912	889	Hs.531987	NM_004912	HPRD:05020	KRIT1	CAM|CCM1	KRIT1, ankyrin repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_106827	chr9	140099979	140100196	+	9.18197	NA	promoter-TSS (NM_001144026)	promoter-TSS (NM_001144026)	3	NM_053045	94107	Hs.231029	NM_053045	HPRD:17496	TMEM203	HBEBP1	transmembrane protein 203	protein-coding
19-PTNLD28-TUMOR_peak_83999	chr5	172199066	172199319	+	9.17913	NA	promoter-TSS (NM_004417)	promoter-TSS (NM_004417)	-989	NM_004417	1843	Hs.171695	NM_004417	HPRD:02835	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_13412	chr10	47740129	47740252	+	9.17747	NA	promoter-TSS (NR_104039)	promoter-TSS (NR_104039)	-114	NR_104039	100132929	Hs.645212	NM_001137556	ENSG00000189090	FAM25BP	FAM25A|FAM25B|FAM25C|FAM25G	protein FAM25	pseudo
19-PTNLD28-TUMOR_peak_19461	chr11	67033771	67033870	+	9.17747	NA	promoter-TSS (NM_001619)	promoter-TSS (NM_001619)	-85	NM_001619	156	Hs.83636	NM_001619	HPRD:00182	ADRBK1	BARK1|BETA-ARK1|GRK2	adrenergic, beta, receptor kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_61792	chr20	48929441	48929644	+	9.17747	NA	non-coding (NR_109950, exon 2 of 3)	non-coding (NR_109950, exon 2 of 3)	8337	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_4938	chr1	94128156	94128298	+	9.17747	NA	intron (NM_001261408, intron 4 of 13)	L3|LINE|CR1	18699	NM_001261409	8412	Hs.36958	NM_003567	HPRD:05268	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
19-PTNLD28-TUMOR_peak_36905	chr16	24508818	24508974	+	9.17438	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-42012	NM_006910	5930	Hs.188553	NM_006910	HPRD:02964	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	retinoblastoma binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_40512	chr17	19003888	19004029	+	9.17438	NA	Intergenic	Intergenic	7432	NM_001291904	79999	Hs.677375	NM_024934		LOC79999	-	uncharacterized LOC79999	protein-coding
19-PTNLD28-TUMOR_peak_7674	chr1	161284633	161284767	+	9.17438	NA	intron (NM_001035513, intron 1 of 3)	intron (NM_001035513, intron 1 of 3)	534	NR_103459	6391	Hs.444472	NM_003001		SDHC	CYB560|CYBL|PGL3|QPS1|SDH3	succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa	protein-coding
19-PTNLD28-TUMOR_peak_60784	chr20	35022982	35023367	+	9.17438	NA	intron (NM_014902, intron 2 of 12)	intron (NM_014902, intron 2 of 12)	-66644	NM_001042486	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_57138	chr2	177356012	177356246	+	9.17438	NA	Intergenic	Intergenic	109651	NR_031648	100302142		NR_031648		MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
19-PTNLD28-TUMOR_peak_21569	chr11	119191725	119191851	+	9.17438	NA	Intergenic	CpG	-3948	NM_006500	4162	Hs.599039	NM_006500	HPRD:01120	MCAM	CD146|MUC18	melanoma cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_19936	chr11	73035370	73035521	+	9.17438	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	15782	NM_014786	9828	Hs.533719	NM_014786	HPRD:10658	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
19-PTNLD28-TUMOR_peak_81116	chr5	90446132	90446304	+	9.17438	NA	intron (NR_003149, intron 88 of 89)	intron (NR_003149, intron 88 of 89)	164001	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23033	chr12	10875848	10876076	+	9.17125	NA	promoter-TSS (NM_001145426)	promoter-TSS (NM_001145426)	-9	NM_003651	8531	Hs.221889	NM_003651	HPRD:10347	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y box binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_82809	chr5	141703772	141703936	+	9.17080	NA	5' UTR (NM_001293290, exon 1 of 2)	5' UTR (NM_001293290, exon 1 of 2)	128	NM_001293289	81848	Hs.323308	NM_030964	HPRD:10466	SPRY4	HH17	sprouty homolog 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_8108	chr1	169541509	169541748	+	9.16816	NA	intron (NM_000130, intron 2 of 24)	intron (NM_000130, intron 2 of 24)	14141	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
19-PTNLD28-TUMOR_peak_59120	chr2	238783236	238783492	+	9.16816	NA	intron (NM_005855, intron 1 of 2)	intron (NM_005855, intron 1 of 2)	15177	NM_005855	10267	Hs.471783	NM_005855	HPRD:05515	RAMP1	-	receptor (G protein-coupled) activity modifying protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16213	chr10	128365500	128365660	+	9.16816	NA	Intergenic	L1PA3|LINE|L1	-155570	NM_001004298	118611	Hs.587663	NM_001004298	HPRD:16587	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
19-PTNLD28-TUMOR_peak_85593	chr6	15480100	15480240	+	9.16816	NA	intron (NM_001267040, intron 5 of 17)	intron (NM_001267040, intron 5 of 17)	183119	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20969	chr11	106973904	106974146	+	9.16816	NA	Intergenic	L1PB3|LINE|L1	-84854	NM_001256424	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_69948	chr3	115237382	115237592	+	9.16816	NA	Intergenic	Intergenic	-104664	NM_002045	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_81641	chr5	114598046	114598302	+	9.16816	NA	intron (NM_005023, intron 1 of 8)	intron (NM_005023, intron 1 of 8)	395	NM_005023	5229	Hs.254006	NM_005023	HPRD:03612	PGGT1B	BGGI|GGTI	protein geranylgeranyltransferase type I, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_105817	chr9	123452235	123452413	+	9.16816	NA	intron (NM_001080497, intron 1 of 5)	intron (NM_001080497, intron 1 of 5)	24441	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
19-PTNLD28-TUMOR_peak_78197	chr4	183753121	183753240	+	9.16816	NA	Intergenic	(TCTCC)n|Simple_repeat|Simple_repeat	85450	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_61037	chr20	38414044	38414432	+	9.16816	NA	Intergenic	Intergenic	-218865	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_21083	chr11	110350094	110350416	+	9.16816	NA	Intergenic	Intergenic	49594	NM_004109	2230	Hs.744	NM_004109	HPRD:00059	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
19-PTNLD28-TUMOR_peak_54060	chr2	89948364	89948512	+	9.16816	NA	Intergenic	Intergenic	836554	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_67120	chr3	23059411	23059581	+	9.16816	NA	Intergenic	Intergenic	-185288	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_101809	chr8	146030537	146030672	+	9.16816	NA	intron (NM_213605, intron 4 of 4)	LTR13|LTR|ERVK	6343	NM_213605	340385	Hs.521942	NM_213605	HPRD:15815	ZNF517	-	zinc finger protein 517	protein-coding
19-PTNLD28-TUMOR_peak_71115	chr3	136784236	136784581	+	9.16816	NA	Intergenic	Intergenic	107701	NM_144717	53833	Hs.61232	NM_144717	HPRD:14594	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_75839	chr4	78459381	78459640	+	9.16816	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	26603	NM_006419	10563	Hs.100431	NM_006419	HPRD:05513	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	chemokine (C-X-C motif) ligand 13	protein-coding
19-PTNLD28-TUMOR_peak_45092	chr18	28849066	28849215	+	9.16816	NA	Intergenic	Intergenic	-48912	NM_001942	1828	Hs.2633	NM_001942	HPRD:00515	DSG1	CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1	desmoglein 1	protein-coding
19-PTNLD28-TUMOR_peak_105554	chr9	116726375	116726755	+	9.16816	NA	intron (NM_133374, intron 1 of 13)	intron (NM_133374, intron 1 of 13)	88003	NM_133374	114991	Hs.349208	NM_133374	HPRD:18719	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
19-PTNLD28-TUMOR_peak_109522	chrX	133738151	133738305	+	9.16816	NA	intron (NM_021796, intron 1 of 2)	intron (NM_021796, intron 1 of 2)	54174	NR_038998	100506757	Hs.130961	NR_038998		LINC00629	-	long intergenic non-protein coding RNA 629	ncRNA
19-PTNLD28-TUMOR_peak_103421	chr9	66343632	66343727	+	9.16816	NA	Intergenic	CpG	-113610	NR_121647	103352539	Hs.351215	NR_121647		LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
19-PTNLD28-TUMOR_peak_7824	chr1	164311258	164311493	+	9.16816	NA	Intergenic	L1P4e|LINE|L1	-217222	NM_001204963	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_66294	chr3	5203939	5204048	+	9.16816	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	-25366	NM_014674	9695	Hs.224616	NM_014674	HPRD:09644	EDEM1	EDEM	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96871	chr8	1765104	1765393	+	9.16816	NA	promoter-TSS (NR_030326)	promoter-TSS (NR_030326)	-149	NR_030326	693181		NR_030326	miRBase:MI0003608	MIR596	MIRN596|hsa-mir-596	microRNA 596	ncRNA
19-PTNLD28-TUMOR_peak_43819	chr17	77268774	77268941	+	9.16816	NA	intron (NM_001082575, intron 3 of 14)	intron (NM_001082575, intron 3 of 14)	197838	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
19-PTNLD28-TUMOR_peak_60619	chr20	32605525	32605668	+	9.16816	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-23423	NR_109885	101926888	Hs.405849	NR_109885	ENSG00000228265	RALY-AS1	-	RALY antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36906	chr16	24510653	24510763	+	9.16816	NA	Intergenic	Intergenic	-40200	NM_006910	5930	Hs.188553	NM_006910	HPRD:02964	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	retinoblastoma binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_65428	chr22	37977668	37977790	+	9.16816	NA	Intergenic	Intergenic	-1705	NM_006498	3957	Hs.531776	NM_006498	HPRD:08859	LGALS2	HL14	lectin, galactoside-binding, soluble, 2	protein-coding
19-PTNLD28-TUMOR_peak_14846	chr10	91237993	91238232	+	9.16816	NA	intron (NM_213606, intron 2 of 7)	LTR33|LTR|ERVL	22364	NR_120614	101926906	Hs.568874	NR_120614	ENSG00000234452	SLC16A12-AS1	-	SLC16A12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48905	chr19	38997658	38997818	+	9.16450	NA	intron (NM_000540, intron 57 of 105)	intron (NM_000540, intron 57 of 105)	73398	NM_001042723	6261	Hs.466664	NM_000540	HPRD:01618	RYR1	CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1 (skeletal)	protein-coding
19-PTNLD28-TUMOR_peak_47702	chr19	15261282	15261507	+	9.16450	NA	Intergenic	L2a|LINE|L2	-24784	NM_006844	10994	Hs.78880	NM_006844	HPRD:16152	ILVBL	209L8|AHAS|ILV2H	ilvB (bacterial acetolactate synthase)-like	protein-coding
19-PTNLD28-TUMOR_peak_19349	chr11	65790001	65790136	+	9.16450	NA	intron (NM_053054, intron 2 of 11)	CpG	3920	NM_053054	117144	Hs.189105	NM_053054	HPRD:09396	CATSPER1	CATSPER|SPGF7	cation channel, sperm associated 1	protein-coding
19-PTNLD28-TUMOR_peak_21027	chr11	108432259	108432610	+	9.16450	NA	intron (NM_015065, intron 1 of 5)	intron (NM_015065, intron 1 of 5)	31940	NM_015065	23086	Hs.28540	NM_015065	HPRD:08341	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
19-PTNLD28-TUMOR_peak_92958	chr7	66385978	66386182	+	9.16450	NA	promoter-TSS (NM_017994)	promoter-TSS (NM_017994)	-123	NM_017994	55069	Hs.488478	NM_017994	HPRD:08541	TMEM248	C7orf42	transmembrane protein 248	protein-coding
19-PTNLD28-TUMOR_peak_94906	chr7	116164658	116164786	+	9.16450	NA	promoter-TSS (NM_001172895)	promoter-TSS (NM_001172895)	-117	NM_001753	857	Hs.74034	NM_001753	HPRD:03028	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1, caveolae protein, 22kDa	protein-coding
19-PTNLD28-TUMOR_peak_53004	chr2	62589797	62590029	+	9.16450	NA	Intergenic	Intergenic	143691	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_36353	chr16	12286951	12287218	+	9.16450	NA	intron (NM_032167, intron 13 of 20)	L1ME1|LINE|L1	216482	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_53374	chr2	70844836	70844964	+	9.16450	NA	Intergenic	Intergenic	-63753	NM_001099691	7039	Hs.170009	NM_003236	HPRD:07522	TGFA	TFGA	transforming growth factor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_49269	chr19	44140436	44140589	+	9.16450	NA	intron (NM_145296, intron 1 of 8)	intron (NM_145296, intron 1 of 8)	3479	NM_145296	199731	Hs.370984	NM_145296	HPRD:17141	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
19-PTNLD28-TUMOR_peak_50710	chr2	69497	69609	+	9.16450	NA	Intergenic	Intergenic	-22965	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_14542	chr10	80843778	80843902	+	9.16450	NA	intron (NM_020338, intron 1 of 24)	L2b|LINE|L2	15048	NM_020338	57178	Hs.193118	NM_020338	HPRD:12115	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger, MIZ-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_57221	chr2	179343808	179343977	+	9.16450	NA	promoter-TSS (NM_001135212)	promoter-TSS (NM_001135212)	-537	NM_001135212	51661	Hs.410378	NM_016105	HPRD:08451	FKBP7	FKBP23|PPIase	FK506 binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_36072	chr16	5155059	5155183	+	9.16450	NA	Intergenic	Intergenic	-7300	NM_001289029	196483	Hs.406461	NM_201400	HPRD:18018	FAM86A	-	family with sequence similarity 86, member A	protein-coding
19-PTNLD28-TUMOR_peak_50206	chr19	53898696	53898905	+	9.16185	NA	intron (NM_001040185, intron 1 of 3)	CpG	403	NM_001040185	91661	Hs.685640	NM_138372	HPRD:14285	ZNF765	-	zinc finger protein 765	protein-coding
19-PTNLD28-TUMOR_peak_42775	chr17	60730512	60730693	+	9.16129	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	25840	NM_006039	9902	Hs.7835	NM_006039	HPRD:10094	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor, C type 2	protein-coding
19-PTNLD28-TUMOR_peak_49699	chr19	48918201	48918369	+	9.16129	NA	exon (NM_000836, exon 6 of 13)	exon (NM_000836, exon 6 of 13)	20153	NM_000836	2906	Hs.445015	NM_000836	HPRD:04095	GRIN2D	EB11|GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, N-methyl D-aspartate 2D	protein-coding
19-PTNLD28-TUMOR_peak_70454	chr3	125775537	125775675	+	9.16129	NA	promoter-TSS (NM_001008487)	promoter-TSS (NM_001008487)	12	NM_001008487	54946	Hs.573007	NM_017836	HPRD:11580	SLC41A3	SLC41A1-L2	solute carrier family 41, member 3	protein-coding
19-PTNLD28-TUMOR_peak_36808	chr16	22649731	22650052	+	9.16129	NA	Intergenic	Intergenic	-79712	NR_030385	693131		NR_030385		MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
19-PTNLD28-TUMOR_peak_41574	chr17	40975888	40976150	+	9.16129	NA	promoter-TSS (NR_106839)	promoter-TSS (NR_106839)	-58	NR_106839	102465468		NR_106839		MIR6781	hsa-mir-6781	microRNA 6781	ncRNA
19-PTNLD28-TUMOR_peak_63634	chr21	42431491	42431751	+	9.16129	NA	Intergenic	Intergenic	88370	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_18197	chr11	43568857	43569195	+	9.16129	NA	Intergenic	CpG	-12180	NR_031577	100313777		NR_031577	miRBase:MI0003933	MIR670	hsa-mir-670	microRNA 670	ncRNA
19-PTNLD28-TUMOR_peak_73920	chr4	2736330	2736617	+	9.16129	NA	Intergenic	L1M4b|LINE|L1	21279	NM_001161527	79155	Hs.368551	NM_024309	HPRD:18207	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_96940	chr8	6766577	6766748	+	9.16129	NA	Intergenic	AluJb|SINE|Alu	16936	NM_001926	1671	Hs.711	NM_001926	HPRD:02719	DEFA6	DEF6|HD-6	defensin, alpha 6, Paneth cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_102160	chr9	8864021	8864152	+	9.16129	NA	intron (NM_002839, intron 11 of 45)	intron (NM_002839, intron 11 of 45)	6068	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102169	chr9	9931252	9931496	+	9.16129	NA	intron (NM_002839, intron 5 of 45)	L1PA3|LINE|L1	681349	NM_002839	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_76359	chr4	99849376	99849490	+	9.15893	NA	intron (NM_001968, intron 1 of 6)	CpG	810	NM_001130678	1977	Hs.249718	NM_001968		EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F	eukaryotic translation initiation factor 4E	protein-coding
19-PTNLD28-TUMOR_peak_43405	chr17	73256911	73257076	+	9.15893	NA	promoter-TSS (NM_015971)	promoter-TSS (NM_015971)	749	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_14101	chr10	71951768	71951958	+	9.15893	NA	Intergenic	L1MC4a|LINE|L1	-21578	NM_001142648	56681	Hs.499960	NM_020150	HPRD:07608	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated, Ras related GTPase 1A	protein-coding
19-PTNLD28-TUMOR_peak_86665	chr6	31802304	31802477	+	9.15543	NA	promoter-TSS (NM_001287482).2	promoter-TSS (NM_001287482).2	-302	NM_001287487	50854	Hs.640836	NM_016947	HPRD:12015	C6orf48	D6S57|G8	chromosome 6 open reading frame 48	protein-coding
19-PTNLD28-TUMOR_peak_82867	chr5	142431213	142431369	+	9.15449	NA	intron (NM_015071, intron 14 of 22)	intron (NM_015071, intron 14 of 22)	-182816	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40732	chr17	25783683	25783893	+	9.15449	NA	Intergenic	CpG	-15248	NM_014238	8844	Hs.133534	NM_014238		KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
19-PTNLD28-TUMOR_peak_3216	chr1	46797433	46797655	+	9.15449	NA	Intergenic	Harlequin-int|LTR|ERV1	-8305	NR_045789	387338	Hs.163424	NM_199044		NSUN4	SHTAP	NOP2/Sun domain family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_19994	chr11	74023438	74023630	+	9.15449	NA	promoter-TSS (NM_182904)	promoter-TSS (NM_182904)	-813	NM_001288748	283208	Hs.660541	NM_182904	HPRD:16413	P4HA3	-	prolyl 4-hydroxylase, alpha polypeptide III	protein-coding
19-PTNLD28-TUMOR_peak_16402	chr10	135228528	135228651	+	9.15449	NA	intron (NM_138384, intron 9 of 10)	SVA_D|Other|Other	9532	NM_001012508	503542	Hs.64968	NM_001012508	HPRD:18499	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein homolog (zebrafish)	protein-coding
19-PTNLD28-TUMOR_peak_7421	chr1	157652619	157652822	+	9.15449	NA	intron (NM_052939, intron 11 of 14)	intron (NM_052939, intron 11 of 14)	17927	NM_052939	115352	Hs.292449	NM_052939	HPRD:07352	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|SPAP2	Fc receptor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_6847	chr1	152009049	152009202	+	9.15282	NA	intron (NM_005620, intron 1 of 2)	intron (NM_005620, intron 1 of 2)	386	NM_005620	6282	Hs.417004	NM_005620	HPRD:04385	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
19-PTNLD28-TUMOR_peak_74037	chr4	3944218	3944320	+	9.15258	NA	non-coding (NR_024253, exon 6 of 6)	non-coding (NR_024253, exon 6 of 6)	12879	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_75989	chr4	83294285	83294476	+	9.15258	NA	intron (NM_002138, intron 1 of 7)	intron (NM_002138, intron 1 of 7)	769	NM_031369	3184	Hs.480073	NM_002138		HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	protein-coding
19-PTNLD28-TUMOR_peak_90687	chr6	170948773	170948954	+	9.15251	NA	Intergenic	Intergenic	-55083	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_100845	chr8	128982279	128982600	+	9.15251	NA	intron (NR_003367, intron 2 of 7)	intron (NR_003367, intron 2 of 7)	9560	NR_031610	100302161		NR_031610	miRBase:MI0006338	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_95849	chr7	140340594	140341082	+	9.15251	NA	Intergenic	CpG	-32115	NM_052853	90956	Hs.744886	NM_052853	HPRD:10631	ADCK2	AARF	aarF domain containing kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_20594	chr11	93275537	93275821	+	9.15251	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	867	NM_020179	56935	Hs.438064	NM_020179	HPRD:17008	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_50283	chr19	54727346	54727531	+	9.15052	NA	intron (NM_006864, intron 7 of 12)	intron (NM_006864, intron 7 of 12)	19172	NM_024318	79168	Hs.688335	NM_024318		LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding
19-PTNLD28-TUMOR_peak_17543	chr11	19102143	19102354	+	9.15052	NA	Intergenic	MIRb|SINE|MIR	-20020	NM_054030	117194	Hs.350566	NM_054030	HPRD:06247	MRGPRX2	MGRG3|MRGX2	MAS-related GPR, member X2	protein-coding
19-PTNLD28-TUMOR_peak_11426	chr1	244999524	244999636	+	9.14817	NA	intron (NM_198076, intron 1 of 3)	L2|LINE|L2	941	NM_198076	116228	Hs.411490	NM_198076	HPRD:13307	COX20	FAM36A	COX20 cytochrome C oxidase assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_49946	chr19	50819052	50819414	+	9.14249	NA	3' UTR (NM_004977, exon 5 of 5)	3' UTR (NM_004977, exon 5 of 5)	13401	NM_004977	3748	Hs.467146	NM_004977	HPRD:08886	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel, Shaw-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_97359	chr8	17940800	17941074	+	9.14249	NA	intron (NM_001127505, intron 1 of 13)	intron (NM_001127505, intron 1 of 13)	942	NM_177924	427	Hs.527412	NM_004315	HPRD:01969	ASAH1	AC|ACDase|ASAH|PHP|PHP32|SMAPME	N-acylsphingosine amidohydrolase (acid ceramidase) 1	protein-coding
19-PTNLD28-TUMOR_peak_61410	chr20	44847357	44847556	+	9.14249	NA	intron (NM_021248, intron 4 of 11)	intron (NM_021248, intron 4 of 11)	89681	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_12477	chr10	25012834	25012945	+	9.14249	NA	promoter-TSS (NM_020824)	promoter-TSS (NM_020824)	-292	NM_020824	57584	Hs.524195	NM_020824	HPRD:06445	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
19-PTNLD28-TUMOR_peak_82483	chr5	138207307	138207446	+	9.14206	NA	3' UTR (NM_015564, exon 2 of 2)	3' UTR (NM_015564, exon 2 of 2)	-3543	NM_001290312	1495	Hs.445981	NM_001903	HPRD:00285	CTNNA1	CAP102	catenin (cadherin-associated protein), alpha 1, 102kDa	protein-coding
19-PTNLD28-TUMOR_peak_63713	chr21	43352320	43352440	+	9.14206	NA	intron (NM_015500, intron 2 of 13)	MER21C|LTR|ERVL	-5581	NM_199050	25966	Hs.473894	NM_015500	HPRD:10745	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium-dependent domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45643	chr18	46368180	46368331	+	9.14206	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	100922	NM_001190823	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_93006	chr7	67782537	67782753	+	9.14206	NA	Intergenic	Intergenic	297405	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_64734	chr22	24408052	24408429	+	9.14206	NA	intron (NM_001199281, intron 1 of 36)	MIRb|SINE|MIR	420	NM_001199281	23523	Hs.517478	NM_012295	HPRD:10369	CABIN1	CAIN|PPP3IN	calcineurin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_75594	chr4	69917046	69917252	+	9.14206	NA	Intergenic	Harlequin-int|LTR|ERV1	-31034	NM_001075	7365	Hs.201634	NM_001075		UGT2B10	UDPGT2B10	UDP glucuronosyltransferase 2 family, polypeptide B10	protein-coding
19-PTNLD28-TUMOR_peak_3112	chr1	45121353	45121474	+	9.14206	NA	intron (NM_001300746, intron 1 of 1)	intron (NM_001300746, intron 1 of 1)	18867	NM_024587	79639	Hs.22157	NM_024587	HPRD:07989	TMEM53	NET4	transmembrane protein 53	protein-coding
19-PTNLD28-TUMOR_peak_85024	chr6	5085060	5085209	+	9.13783	NA	promoter-TSS (NM_001145115)	promoter-TSS (NM_001145115)	-586	NM_001145115	648791	Hs.653089	NM_001145115	ENSG00000219607	PPP1R3G	-	protein phosphatase 1, regulatory subunit 3G	protein-coding
19-PTNLD28-TUMOR_peak_65423	chr22	37945784	37945938	+	9.13783	NA	Intergenic	Intergenic	-10610	NM_152243	11135	Hs.225356	NM_152243	HPRD:07303	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding
19-PTNLD28-TUMOR_peak_49903	chr19	50528222	50528362	+	9.13783	NA	promoter-TSS (NM_015428)	promoter-TSS (NM_015428)	513	NM_016440	51231	Hs.443330	NM_016440	HPRD:18289	VRK3	-	vaccinia related kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_105936	chr9	124887583	124887749	+	9.13656	NA	Intergenic	Intergenic	-5220	NR_039690	100616312		NR_039690	miRBase:MI0016831	MIR4478	-	microRNA 4478	ncRNA
19-PTNLD28-TUMOR_peak_28531	chr13	77459628	77459999	+	9.13656	NA	exon (NM_138444, exon 1 of 1)	exon (NM_138444, exon 1 of 1)	727	NM_138444	115207	Hs.644125	NM_138444	HPRD:11060	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_60633	chr20	32856918	32857454	+	9.13656	NA	TTS (NM_001672)	TTS (NM_001672)	9015	NM_001672	434	Hs.659995	NM_001672	HPRD:02562	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
19-PTNLD28-TUMOR_peak_100042	chr8	108135827	108136229	+	9.13656	NA	Intergenic	MER52A|LTR|ERV1	-353556	NM_139166	137735	Hs.374668	NM_139166	HPRD:11608	ABRA	STARS	actin-binding Rho activating protein	protein-coding
19-PTNLD28-TUMOR_peak_107314	chrUn_gl000241	36705	37190	+	9.13529	NA	NA	CpG	NA	NA								
19-PTNLD28-TUMOR_peak_74004	chr4	3702491	3702622	+	9.13529	NA	Intergenic	Intergenic	-22974	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	ncRNA
19-PTNLD28-TUMOR_peak_82480	chr5	138089624	138090098	+	9.13529	NA	intron (NM_001290309, intron 1 of 16)	intron (NM_001290309, intron 1 of 16)	776	NM_001903	1495	Hs.445981	NM_001903	HPRD:00285	CTNNA1	CAP102	catenin (cadherin-associated protein), alpha 1, 102kDa	protein-coding
19-PTNLD28-TUMOR_peak_102866	chr9	35688833	35688970	+	9.13529	NA	intron (NM_001301227, intron 2 of 8)	intron (NM_001301227, intron 2 of 8)	1152	NM_001301227	7169	Hs.300772	NM_003289	HPRD:11768	TPM2	AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB	tropomyosin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_12024	chr10	11929761	11929891	+	9.13529	NA	intron (NR_038222, intron 2 of 5)	intron (NR_038222, intron 2 of 5)	6883	NR_038222	219731	Hs.576787	NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28842	chr13	100153534	100153806	+	9.13457	NA	promoter-TSS (NM_004800)	promoter-TSS (NM_004800)	42	NM_004800	9375	Hs.607896	NM_004800	HPRD:09198	TM9SF2	P76	transmembrane 9 superfamily member 2	protein-coding
19-PTNLD28-TUMOR_peak_6671	chr1	150235197	150235387	+	9.13457	NA	intron (NM_012113, intron 6 of 10)	intron (NM_012113, intron 6 of 10)	5074	NM_012113	23632	Hs.528988	NM_012113	HPRD:05320	CA14	CAXiV	carbonic anhydrase XIV	protein-coding
19-PTNLD28-TUMOR_peak_54082	chr2	90527657	90527775	+	9.13401	NA	Intergenic	TAR1|Satellite|telo	1320259	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_43473	chr17	73718262	73718385	+	9.12591	NA	intron (NM_001005731, intron 1 of 38)	intron (NM_001005731, intron 1 of 38)	807	NM_000213	3691	Hs.632226	NM_000213	HPRD:00946	ITGB4	CD104	integrin, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_2523	chr1	38096011	38096130	+	9.12279	NA	intron (NM_001242909, intron 2 of 7)	L3b|LINE|CR1	4525	NM_001242910	284654	Hs.135015	NM_173640	HPRD:08288	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
19-PTNLD28-TUMOR_peak_8030	chr1	168105324	168105604	+	9.12279	NA	5' UTR (NM_001267612, exon 1 of 6)	5' UTR (NM_001267612, exon 1 of 6)	210	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_13187	chr10	43634314	43634516	+	9.12279	NA	intron (NM_018590, intron 1 of 7)	intron (NM_018590, intron 1 of 7)	522	NM_018590	55454	Hs.657569	NM_018590	HPRD:11348	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_27449	chr13	23540065	23540249	+	9.12279	NA	Intergenic	Intergenic	-67837	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	brain abundant, membrane attached signal protein 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_30428	chr14	55590696	55590823	+	9.12279	NA	Intergenic	Intergenic	-5176	NM_001177388	3958	Hs.531081	NM_002306	HPRD:01090	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	lectin, galactoside-binding, soluble, 3	protein-coding
19-PTNLD28-TUMOR_peak_66515	chr3	10157533	10157952	+	9.12253	NA	intron (NM_018462, intron 1 of 2)	intron (NM_018462, intron 1 of 2)	409	NM_018462	55845	Hs.649307	NM_018462	HPRD:12818	BRK1	C3orf10|MDS027|hHBrk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding
19-PTNLD28-TUMOR_peak_45431	chr18	42518484	42518754	+	9.12253	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	31512	NR_036203	100422829		NR_036203	miRBase:MI0015848	MIR4319	-	microRNA 4319	ncRNA
19-PTNLD28-TUMOR_peak_55102	chr2	114113922	114114117	+	9.12253	NA	Intergenic	Intergenic	-77521	NM_003466	7849	Hs.469728	NM_003466	HPRD:01335	PAX8	-	paired box 8	protein-coding
19-PTNLD28-TUMOR_peak_106439	chr9	133326961	133327348	+	9.12253	NA	intron (NM_000050, intron 2 of 15)	MIRb|SINE|MIR	7060	NM_000050	445	Hs.160786	NM_000050	HPRD:04590	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_102595	chr9	29450377	29450593	+	9.12102	NA	Intergenic	L1PA3|LINE|L1	-237487	NM_001258282	158038	Hs.662661	NM_152570	HPRD:08715	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_87795	chr6	46143774	46144112	+	9.12102	NA	Intergenic	Intergenic	-5196	NM_001290073	59084	Hs.35198	NM_021572	HPRD:13272	ENPP5	NPP-5	ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_36348	chr16	12213520	12213734	+	9.12102	NA	intron (NM_032167, intron 11 of 20)	MIRb|SINE|MIR	143025	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_6168	chr1	144036967	144037162	+	9.12102	NA	Intergenic	Intergenic	-109747	NM_001278267	100288142	Hs.445080	NM_001278267	ENSG00000203832	NBPF20	-	neuroblastoma breakpoint family, member 20	protein-coding
19-PTNLD28-TUMOR_peak_102073	chr9	5455311	5455422	+	9.12102	NA	intron (NM_014143, intron 1 of 6)	intron (NM_014143, intron 1 of 6)	4863	NM_001267706	29126	Hs.521989	NM_014143	HPRD:05655	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1	CD274 molecule	protein-coding
19-PTNLD28-TUMOR_peak_53496	chr2	73511593	73511931	+	9.12102	NA	Intergenic	CpG	9067	NM_001965	1961	Hs.3052	NM_001965	HPRD:00550	EGR4	NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
19-PTNLD28-TUMOR_peak_48513	chr19	33060952	33061137	+	9.12102	NA	Intergenic	Intergenic	-11050	NM_004708	9141	Hs.443831	NM_004708	HPRD:06843	PDCD5	TFAR19	programmed cell death 5	protein-coding
19-PTNLD28-TUMOR_peak_3400	chr1	49242352	49242501	+	9.12102	NA	exon (NM_024603, exon 1 of 6)	exon (NM_024603, exon 1 of 6)	121	NM_024603	79656	Hs.475348	NM_024603		BEND5	C1orf165	BEN domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_64144	chr21_gl000210_random	23279	23414	+	9.12102	NA	NA	AluSx|SINE|Alu	NA	NA								
19-PTNLD28-TUMOR_peak_96678	chr7	156685052	156685371	+	9.12046	NA	intron (NM_022458, intron 1 of 16)	CpG	691	NM_022458	64327	Hs.209989	NM_022458	HPRD:05700	LMBR1	ACHP|C7orf2|DIF14|PPD2|TPT|ZRS	limb development membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_74151	chr4	6259051	6259196	+	9.11930	NA	Intergenic	Intergenic	-12454	NM_001145853	7466	Hs.518602	NM_006005	HPRD:05864	WFS1	CTRCT41|WFRS|WFS|WFSL	Wolfram syndrome 1 (wolframin)	protein-coding
19-PTNLD28-TUMOR_peak_26935	chr12	124389942	124390130	+	9.11930	NA	intron (NM_207437, intron 56 of 77)	L1MC4a|LINE|L1	67127	NM_025140	80212	Hs.713131	NM_025140	HPRD:16919	CCDC92	-	coiled-coil domain containing 92	protein-coding
19-PTNLD28-TUMOR_peak_19612	chr11	68637871	68638083	+	9.11930	NA	Intergenic	HERV3-int|LTR|ERV1	-28578	NM_001031847	1374	Hs.503043	NM_001876	HPRD:02755	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
19-PTNLD28-TUMOR_peak_35376	chr15	97839251	97839500	+	9.11930	NA	Intergenic	L1PA3|LINE|L1	225666	NR_120324	101927286	Hs.611279	NR_120324		LOC101927286	-	uncharacterized LOC101927286	ncRNA
19-PTNLD28-TUMOR_peak_44103	chr17	80382235	80382477	+	9.11930	NA	exon (NM_173620, exon 3 of 12)	exon (NM_173620, exon 3 of 12)	-5843	NM_175902	79701	Hs.187505	NM_024648	HPRD:13386	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_96374	chr7	151020021	151020257	+	9.11930	NA	Intergenic	Intergenic	-18708	NM_016118	51667	Hs.647082	NM_016118	HPRD:07450	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin-like proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_106604	chr9	136603227	136603373	+	9.11930	NA	intron (NM_007101, intron 1 of 20)	intron (NM_007101, intron 1 of 20)	179	NM_001134707	1757	Hs.198003	NM_007101	HPRD:06831	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_20252	chr11	78061824	78061923	+	9.11930	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	-8947	NM_012296	9846	Hs.429434	NM_012296	HPRD:05866	GAB2	-	GRB2-associated binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_77832	chr4	159459394	159459609	+	9.11930	NA	intron (NR_045583, intron 1 of 16)	L2a|LINE|L2	16635	NR_045583	59350	Hs.591686	NM_021634	HPRD:05975	RXFP1	LGR7|RXFPR1	relaxin/insulin-like family peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_1036	chr1	16316360	16316569	+	9.11930	NA	Intergenic	Intergenic	-13837	NM_001242884	7709	Hs.433764	NM_003443	HPRD:04968	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_93055	chr7	69782575	69782713	+	9.11930	NA	intron (NM_001127231, intron 4 of 17)	intron (NM_001127231, intron 4 of 17)	718739	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_101055	chr8	133067214	133067325	+	9.11930	NA	exon (NM_001080399, exon 2 of 14)	exon (NM_001080399, exon 2 of 14)	4358	NM_001080399	729330	Hs.653174	NM_001080399	ENSG00000253117	OC90	PLA2L	otoconin 90	protein-coding
19-PTNLD28-TUMOR_peak_51138	chr2	11309661	11310021	+	9.11930	NA	intron (NM_001282711, intron 4 of 5)	L2|LINE|L2	14343	NM_001282712	130814	Hs.274415	NM_152391	HPRD:12810	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_49615	chr19	48026855	48027248	+	9.11930	NA	intron (NM_001277075, intron 12 of 14)	L1ME1|LINE|L1	-8536	NM_003827	8775	Hs.730799	NM_003827	HPRD:04447	NAPA	SNAPA	N-ethylmaleimide-sensitive factor attachment protein, alpha	protein-coding
19-PTNLD28-TUMOR_peak_55611	chr2	129250907	129250999	+	9.11930	NA	Intergenic	CpG	-174782	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_73173	chr3	190024333	190024547	+	9.11930	NA	3' UTR (NM_021101, exon 4 of 4)	3' UTR (NM_021101, exon 4 of 4)	15795	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_52988	chr2	62176874	62177058	+	9.11930	NA	intron (NM_152516, intron 1 of 2)	MER34-int|LTR|ERV1	44163	NM_152516	150684	Hs.468702	NM_152516		COMMD1	C2orf5|MURR1	copper metabolism (Murr1) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_75471	chr4	58099703	58099823	+	9.11930	NA	Intergenic	Intergenic	-123212	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_12078	chr10	13023671	13023848	+	9.11930	NA	intron (NM_001282658, intron 6 of 6)	intron (NM_001282658, intron 6 of 6)	19945	NM_031455	83643	Hs.498720	NM_031455	HPRD:13008	CCDC3	-	coiled-coil domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_67958	chr3	47001780	47001908	+	9.11930	NA	intron (NM_001277074, intron 1 of 6)	intron (NM_001277074, intron 1 of 6)	16147	NR_102269	151903	Hs.631918	NM_144716	HPRD:13007	CCDC12	-	coiled-coil domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_87215	chr6	37534274	37534388	+	9.11930	NA	Intergenic	Intergenic	-11133	NR_039669	100616413		NR_039669	miRBase:MI0016810	MIR4462	-	microRNA 4462	ncRNA
19-PTNLD28-TUMOR_peak_86401	chr6	29731504	29731653	+	9.11930	NA	Intergenic	MIRc|SINE|MIR	-12653	NR_001590	340198	Hs.450189	NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_77603	chr4	152609332	152609493	+	9.11872	NA	intron (NM_004564, intron 10 of 12)	L2b|LINE|L2	72763	NM_004564	5188	Hs.119316	NM_004564	HPRD:04706	GATB	PET112|PET112L	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_58461	chr2	219867926	219868025	+	9.11872	NA	exon (NM_194302, exon 34 of 35)	exon (NM_194302, exon 34 of 35)	1038	NR_046086	100129175	Hs.147762	NR_046086	ENSG00000224090	LOC100129175	-	uncharacterized LOC100129175	ncRNA
19-PTNLD28-TUMOR_peak_73441	chr3	194808437	194808715	+	9.11872	NA	intron (NM_152531, intron 3 of 3)	L1PA2|LINE|L1	-6741	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_67848	chr3	45185922	45186092	+	9.11872	NA	intron (NM_022842, intron 1 of 8)	intron (NM_022842, intron 1 of 8)	1907	NM_022842	64866	Hs.476093	NM_022842	HPRD:16696	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_9429	chr1	203424432	203424536	+	9.11872	NA	Intergenic	Intergenic	-20399	NM_002725	5549	Hs.632481	NM_002725	HPRD:03556	PRELP	MST161|MSTP161|SLRR2A	proline/arginine-rich end leucine-rich repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_78957	chr5	12522235	12522494	+	9.11659	NA	Intergenic	L2|LINE|L2	-52605	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_109645	chrX	140271085	140271508	+	9.11659	NA	5' UTR (NM_012317, exon 1 of 1)	5' UTR (NM_012317, exon 1 of 1)	103	NM_012317	23641	Hs.45231	NM_012317	HPRD:02322	LDOC1	BCUR1|Mar7|Mart7	leucine zipper, down-regulated in cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_71620	chr3	149212064	149212195	+	9.11659	NA	intron (NM_004617, intron 3 of 4)	intron (NM_004617, intron 3 of 4)	19761	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_73302	chr3	193323805	193323918	+	9.11659	NA	intron (NM_130834, intron 1 of 29)	intron (NM_130834, intron 1 of 29)	12928	NM_015560	4976	Hs.594504	NM_015560	HPRD:05596	OPA1	MGM1|NPG|NTG|largeG	optic atrophy 1 (autosomal dominant)	protein-coding
19-PTNLD28-TUMOR_peak_91903	chr7	32516426	32516795	+	9.11659	NA	Intergenic	Intergenic	13413	NM_012322	23658	Hs.424908	NM_012322	HPRD:06285	LSM5	YER146W	LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_76582	chr4	110833895	110834205	+	9.11659	NA	promoter-TSS (NM_001178130)	promoter-TSS (NM_001178130)	10	NM_001178130	1950	Hs.419815	NM_001963	HPRD:00578	EGF	HOMG4|URG	epidermal growth factor	protein-coding
19-PTNLD28-TUMOR_peak_15467	chr10	105837119	105837335	+	9.11659	NA	exon (NM_000494, exon 4 of 56)	exon (NM_000494, exon 4 of 56)	8411	NM_000494	1308	Hs.117938	NM_000494	HPRD:00223	COL17A1	BA16H23.2|BP180|BPA-2|BPAG2|LAD-1	collagen, type XVII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_36150	chr16	9146993	9147168	+	9.11659	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-38457	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
19-PTNLD28-TUMOR_peak_77513	chr4	148978070	148978277	+	9.11659	NA	intron (NM_024605, intron 20 of 22)	MIRb|SINE|MIR	274427	NR_039962	100616246		NR_039962		MIR4799	-	microRNA 4799	ncRNA
19-PTNLD28-TUMOR_peak_83535	chr5	158313236	158313429	+	9.11659	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	213456	NM_001290360	1879	Hs.573143	NM_024007	HPRD:01256	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
19-PTNLD28-TUMOR_peak_25556	chr12	90930411	90930915	+	9.11659	NA	Intergenic	L1PA2|LINE|L1	-381137	NR_038868	439916	Hs.350600	NM_001039384	ENSG00000196243	LINC00615	C12orf37	long intergenic non-protein coding RNA 615	ncRNA
19-PTNLD28-TUMOR_peak_39838	chr17	4792420	4792586	+	9.11659	NA	intron (NM_001024937, intron 12 of 31)	intron (NM_001024937, intron 12 of 31)	-10445	NM_001145536	100130311	Hs.579243	NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
19-PTNLD28-TUMOR_peak_20793	chr11	100385826	100385993	+	9.11659	NA	Intergenic	LTR16A|LTR|ERVL	-172498	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_57199	chr2	178618685	178618968	+	9.11659	NA	intron (NM_001077197, intron 11 of 20)	intron (NM_001077197, intron 11 of 20)	134640	NM_001077196	50940	Hs.570273	NM_016953	HPRD:05391	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
19-PTNLD28-TUMOR_peak_106110	chr9	129184397	129184599	+	9.11659	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-11715	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
19-PTNLD28-TUMOR_peak_89913	chr6	149353162	149353346	+	9.11659	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-67434	NR_038408	100128176	Hs.557541	NR_038408		LOC100128176	-	uncharacterized LOC100128176	ncRNA
19-PTNLD28-TUMOR_peak_82379	chr5	136289474	136289678	+	9.11659	NA	Intergenic	L1PA7|LINE|L1	545442	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_94057	chr7	95928954	95929105	+	9.11659	NA	intron (NR_027662, intron 1 of 16)	Tigger3c|DNA|TcMar-Tigger	22430	NM_014251	10165	Hs.489190	NM_014251	HPRD:04837	SLC25A13	ARALAR2|CITRIN|CTLN2	solute carrier family 25 (aspartate/glutamate carrier), member 13	protein-coding
19-PTNLD28-TUMOR_peak_44698	chr18	13253806	13254129	+	9.11659	NA	intron (NM_181482, intron 1 of 5)	intron (NM_181482, intron 1 of 5)	-24137	NM_181481	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_73439	chr3	194802070	194802178	+	9.11594	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	-13193	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71869	chr3	155588831	155589249	+	9.11594	NA	intron (NM_003875, intron 1 of 15)	CpG	715	NM_003875	8833	Hs.591314	NM_003875	HPRD:10927	GMPS	-	guanine monphosphate synthase	protein-coding
19-PTNLD28-TUMOR_peak_42733	chr17	59488283	59488396	+	9.11427	NA	promoter-TSS (NM_203425)	promoter-TSS (NM_203425)	-773	NM_203425	388407	Hs.434459	NM_203425	HPRD:14202	C17orf82	-	chromosome 17 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_36552	chr16	16404366	16404499	+	9.11278	NA	TTS (NR_036141).2	TTS (NR_036141).2	696	NR_036142	100422956		NR_036142	miRBase:MI0014215	MIR3180-2	-	microRNA 3180-2	ncRNA
19-PTNLD28-TUMOR_peak_47883	chr19	17378970	17379223	+	9.11219	NA	intron (NM_014173, intron 1 of 8)	intron (NM_014173, intron 1 of 8)	911	NM_014173	29086	Hs.190722	NM_014173	HPRD:13702	BABAM1	C19orf62|MERIT40|NBA1	BRISC and BRCA1 A complex member 1	protein-coding
19-PTNLD28-TUMOR_peak_6668	chr1	150227899	150228030	+	9.11219	NA	Intergenic	Intergenic	-2254	NM_012113	23632	Hs.528988	NM_012113	HPRD:05320	CA14	CAXiV	carbonic anhydrase XIV	protein-coding
19-PTNLD28-TUMOR_peak_16010	chr10	123355169	123355335	+	9.11177	NA	intron (NR_073009, intron 1 of 16)	intron (NR_073009, intron 1 of 16)	907	NM_001144915	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_54323	chr2	97439704	97439982	+	9.11177	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	13204	NM_020184	26504	Hs.175043	NM_020184	HPRD:07420	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
19-PTNLD28-TUMOR_peak_32189	chr14	103610552	103610651	+	9.11177	NA	Intergenic	LTR3B_|LTR|ERVK	17937	NM_006291	7127	Hs.525607	NM_006291	HPRD:04487	TNFAIP2	B94|EXOC3L3	tumor necrosis factor, alpha-induced protein 2	protein-coding
19-PTNLD28-TUMOR_peak_73892	chr4	2243222	2243636	+	9.11177	NA	intron (NM_024511, intron 1 of 4)	CpG	431	NM_024511	79441	Hs.665869	NM_024511	HPRD:10784	HAUS3	C4orf15|IT1|dgt3	HAUS augmin-like complex, subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_33751	chr15	58844195	58844394	+	9.10999	NA	intron (NM_000236, intron 6 of 8)	intron (NM_000236, intron 6 of 8)	-53360	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_85784	chr6	19415958	19416181	+	9.10999	NA	Intergenic	L1MB7|LINE|L1	-235358	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_70642	chr3	128417110	128417452	+	9.10999	NA	Intergenic	Intergenic	-27698	NM_004637	7879	Hs.744853	NM_004637	HPRD:03805	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_21567	chr11	119186295	119186408	+	9.10999	NA	intron (NM_006500, intron 1 of 15)	intron (NM_006500, intron 1 of 15)	1489	NM_006500	4162	Hs.599039	NM_006500	HPRD:01120	MCAM	CD146|MUC18	melanoma cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_43367	chr17	73028546	73028705	+	9.10306	NA	promoter-TSS (NR_110835)	promoter-TSS (NR_110835)	-37	NR_110835	23510	Hs.514468	NM_015353	HPRD:17176	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_65971	chr22	46449222	46449449	+	9.09602	NA	promoter-TSS (NR_027034)	promoter-TSS (NR_027034)	-391	NR_027034	150381	Hs.659113	NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43395	chr17	73200884	73201243	+	9.09602	NA	promoter-TSS (NM_024844)	promoter-TSS (NM_024844)	-534	NM_024844	79902	Hs.362817	NM_024844	HPRD:01363	NUP85	Nup75	nucleoporin 85kDa	protein-coding
19-PTNLD28-TUMOR_peak_84382	chr5	177541618	177541783	+	9.09602	NA	intron (NM_015111, intron 1 of 4)	intron (NM_015111, intron 1 of 4)	1144	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_64384	chr22	19929298	19929473	+	9.09602	NA	5' UTR (NM_000754, exon 1 of 6)	5' UTR (NM_000754, exon 1 of 6)	122	NM_000754	1312	Hs.370408	NM_000754	HPRD:00284	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_106775	chr9	139694458	139694630	+	9.09602	NA	exon (NM_001039374, exon 4 of 14)	exon (NM_001039374, exon 4 of 14)	3754	NM_001039374	84960	Hs.728796	NM_032874	HPRD:17234	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
19-PTNLD28-TUMOR_peak_88524	chr6	83074353	83074615	+	9.09602	NA	5' UTR (NM_001166392, exon 2 of 2)	5' UTR (NM_001166392, exon 2 of 2)	523	NM_001166392	7162	Hs.82128	NM_006670	HPRD:01837	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_79132	chr5	16934294	16934384	+	9.09344	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	2046	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_10634	chr1	228594873	228594999	+	9.09344	NA	promoter-TSS (NM_145214)	promoter-TSS (NM_145214)	-419	NM_145214	81559	Hs.13543	NM_145214	HPRD:07429	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
19-PTNLD28-TUMOR_peak_82570	chr5	139145423	139145529	+	9.09337	NA	Intergenic	CpG	-19668	NR_105053	101929696	Hs.147408	NR_105052	ENSG00000249131	LOC101929696	-	uncharacterized LOC101929696	ncRNA
19-PTNLD28-TUMOR_peak_76002	chr4	83665885	83666060	+	9.09337	NA	intron (NM_001037582, intron 1 of 4)	intron (NM_001037582, intron 1 of 4)	8611	NR_030301	693160		NR_030301		MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
19-PTNLD28-TUMOR_peak_29118	chr13	113340310	113340472	+	9.09337	NA	Intergenic	Intergenic	-4252	NM_015205	23250	Hs.29189	NM_015205	HPRD:12059	ATP11A	ATPIH|ATPIS	ATPase, class VI, type 11A	protein-coding
19-PTNLD28-TUMOR_peak_42776	chr17	60749013	60749301	+	9.09337	NA	exon (NM_006039, exon 7 of 30)	exon (NM_006039, exon 7 of 30)	44395	NM_006039	9902	Hs.7835	NM_006039	HPRD:10094	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor, C type 2	protein-coding
19-PTNLD28-TUMOR_peak_48951	chr19	39343291	39343446	+	9.09245	NA	promoter-TSS (NM_001005335)	promoter-TSS (NM_001005335)	-389	NM_001005335	3191	Hs.644906	NM_001533	HPRD:04360	HNRNPL	HNRPL|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
19-PTNLD28-TUMOR_peak_49580	chr19	47736029	47736369	+	9.09185	NA	promoter-TSS (NM_001127241)	promoter-TSS (NM_001127241)	-176	NM_001127242	27113	Hs.467020	NM_014417	HPRD:16165	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
19-PTNLD28-TUMOR_peak_773	chr1	11714361	11714838	+	9.08854	NA	promoter-TSS (NM_183413)	promoter-TSS (NM_183413)	167	NM_183412	93611	Hs.556006	NM_033182	HPRD:16445	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
19-PTNLD28-TUMOR_peak_2053	chr1	32054323	32054601	+	9.08635	NA	Intergenic	CpG	10716	NM_001204415	64129	Hs.199368	NM_022164	HPRD:07122	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_14534	chr10	80732984	80733184	+	9.08635	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	94121	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95317	chr7	130628505	130628620	+	9.08635	NA	TTS (NR_024153)	TTS (NR_024153)	30339	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_47639	chr19	14544857	14545160	+	9.08543	NA	intron (NM_002741, intron 1 of 21)	intron (NM_002741, intron 1 of 21)	842	NM_002741	5585	Hs.466044	NM_002741	HPRD:03019	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
19-PTNLD28-TUMOR_peak_12519	chr10	26061074	26061217	+	9.08294	NA	Intergenic	HERVH-int|LTR|ERV1	120504	NR_108067	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_45476	chr18	43652113	43652334	+	9.08294	NA	promoter-TSS (NM_024430)	promoter-TSS (NM_024430)	27	NM_024430	9050	Hs.567384	NM_024430	HPRD:06687	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_66009	chr22	46861900	46862125	+	9.08294	NA	intron (NM_014246, intron 1 of 34)	intron (NM_014246, intron 1 of 34)	71055	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_10695	chr1	229155777	229155921	+	9.08294	NA	Intergenic	Intergenic	-250960	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_8136	chr1	170633618	170634127	+	9.08294	NA	intron (NM_006902, intron 1 of 4)	CpG	559	NM_022716	5396	Hs.283416	NM_006902	HPRD:01337	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_82148	chr5	132361753	132362042	+	9.08294	NA	intron (NM_001300818, intron 1 of 3)	CpG	378	NM_001300818	54819	Hs.29700	NM_017665	HPRD:15699	ZCCHC10	-	zinc finger, CCHC domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_879	chr1	13106575	13106727	+	9.08294	NA	Intergenic	Intergenic	11100	NM_001013407	343068	Hs.567864	NM_001013407	ENSG00000204502	PRAMEF5	PRAMEF23|PRAMEF5L	PRAME family member 5	protein-coding
19-PTNLD28-TUMOR_peak_9747	chr1	206652982	206653109	+	9.08294	NA	intron (NM_001193321, intron 9 of 20)	intron (NM_001193321, intron 9 of 20)	4899	NR_106919	102466202		NR_106919		MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
19-PTNLD28-TUMOR_peak_37035	chr16	28449450	28449552	+	9.08294	NA	Intergenic	AluSx|SINE|Alu	-11726	NM_001199142	8663	Hs.567374	NM_003752	HPRD:04889	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3, subunit C	protein-coding
19-PTNLD28-TUMOR_peak_56476	chr2	158225008	158225344	+	9.08147	NA	Intergenic	L1PA2|LINE|L1	-41030	NM_001009959	57471	Hs.443894	NM_020711	HPRD:13838	ERMN	JN|KIAA1189|ermin	ermin, ERM-like protein	protein-coding
19-PTNLD28-TUMOR_peak_2525	chr1	38115681	38115923	+	9.08147	NA	Intergenic	Intergenic	-15207	NM_001038633	284654	Hs.135015	NM_173640	HPRD:08288	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
19-PTNLD28-TUMOR_peak_28759	chr13	97910292	97910619	+	9.08147	NA	intron (NM_144778, intron 1 of 8)	intron (NM_144778, intron 1 of 8)	35905	NM_144778	10150	Hs.657347	NM_144778	HPRD:09543	MBNL2	MBLL|MBLL39|PRO2032	muscleblind-like splicing regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_72932	chr3	186254836	186254924	+	9.08147	NA	Intergenic	Intergenic	7287	NM_017541	1427	Hs.376209	NM_017541		CRYGS	CRYG8|CTRCT20	crystallin, gamma S	protein-coding
19-PTNLD28-TUMOR_peak_86760	chr6	32794982	32795088	+	9.08147	NA	3' UTR (NM_000544, exon 12 of 12).2	3' UTR (NM_000544, exon 12 of 12).2	-10210	NM_002120	3112	Hs.1802	NM_002120	HPRD:08368	HLA-DOB	DOB	major histocompatibility complex, class II, DO beta	protein-coding
19-PTNLD28-TUMOR_peak_46648	chr19	2295100	2295322	+	9.08147	NA	intron (NM_001101391, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	12945	NM_001101391	645191	Hs.371587	NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_51947	chr2	30475895	30476193	+	9.08147	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	21647	NM_030915	81606	Hs.567598	NM_030915	HPRD:13965	LBH	-	limb bud and heart development	protein-coding
19-PTNLD28-TUMOR_peak_63548	chr21	40351630	40351826	+	9.08147	NA	Intergenic	Intergenic	-2028	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LOC101928435	-	uncharacterized LOC101928435	ncRNA
19-PTNLD28-TUMOR_peak_24425	chr12	53358487	53358684	+	9.07753	NA	Intergenic	Intergenic	-14935	NM_001256293	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_37436	chr16	32831970	32832137	+	9.07753	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	64410	NR_003083	386757	Hs.433146	NM_198857	HPRD:13479	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_47908	chr19	17531485	17531585	+	9.07696	NA	intron (NM_138401, intron 3 of 8)	CpG-13218	879	NM_138401	93343	Hs.515243	NM_138401	HPRD:14298	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
19-PTNLD28-TUMOR_peak_99679	chr8	99953316	99953497	+	9.07696	NA	intron (NM_001256312, intron 1 of 12)	CpG	1393	NM_001256312	6788	Hs.492333	NM_006281	HPRD:05433	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_5606	chr1	113264861	113265070	+	9.07696	NA	exon (NM_182759, exon 2 of 5)	exon (NM_182759, exon 2 of 5)	1776	NM_001004440	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_53553	chr2	74642483	74642680	+	9.07696	NA	exon (NM_001145054, exon 4 of 4)	exon (NM_001145054, exon 4 of 4)	2263	NM_001145054	388963	Hs.445377	NM_001145054	ENSG00000159239	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
19-PTNLD28-TUMOR_peak_35628	chr16	638708	638950	+	9.07672	NA	promoter-TSS (NM_001172664)	promoter-TSS (NM_001172664)	-528	NM_001172663	57799	Hs.459630	NM_021168	HPRD:10182	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_91090	chr7	5571635	5571912	+	9.07641	NA	Intergenic	Intergenic	-1541	NM_001101	60	Hs.520640	NM_001101	HPRD:00032	ACTB	BRWS1|PS1TP5BP1	actin, beta	protein-coding
19-PTNLD28-TUMOR_peak_37346	chr16	31366328	31366518	+	9.07456	NA	promoter-TSS (NM_001286375)	promoter-TSS (NM_001286375)	-32	NM_000887	3687	Hs.248472	NM_000887	HPRD:01051	ITGAX	CD11C|SLEB6	integrin, alpha X (complement component 3 receptor 4 subunit)	protein-coding
19-PTNLD28-TUMOR_peak_68344	chr3	52384498	52384646	+	9.07456	NA	exon (NM_015512, exon 16 of 78)	exon (NM_015512, exon 16 of 78)	34237	NM_015512	25981	Hs.655469	NM_015512	HPRD:11790	DNAH1	DNAHC1|HDHC7|HL-11|HL11|HSRF-1|XLHSRF-1	dynein, axonemal, heavy chain 1	protein-coding
19-PTNLD28-TUMOR_peak_34949	chr15	84751638	84751784	+	9.07456	NA	intron (NR_036652, intron 2 of 9)	L2a|LINE|L2	2772	NR_036652	648809	Hs.585157	NR_036652		EFTUD1P1	FAM42B|HsT19321	elongation factor Tu GTP binding domain containing 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_104115	chr9	84370758	84371009	+	9.07456	NA	intron (NR_109772, intron 3 of 3)	intron (NR_109772, intron 3 of 3)	66255	NR_109772	101927502	Hs.528628	NR_109772	ENSG00000233926	LOC101927502	-	uncharacterized LOC101927502	ncRNA
19-PTNLD28-TUMOR_peak_108203	chrX	47881124	47881243	+	9.07456	NA	Intergenic	Intergenic	14013	NM_001079900	729201	Hs.319319	NM_001079900	ENSG00000171478	SPACA5B	-	sperm acrosome associated 5B	protein-coding
19-PTNLD28-TUMOR_peak_86242	chr6	27636363	27636500	+	9.07456	NA	Intergenic	tRNA-Ile-ATT|tRNA|tRNA	-25383	NR_038293	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_47379	chr19	12025629	12025769	+	9.07456	NA	TTS (NM_021915)	TTS (NM_021915)	-10184	NM_001271848	90592	Hs.528486	NM_144566	HPRD:10903	ZNF700	-	zinc finger protein 700	protein-coding
19-PTNLD28-TUMOR_peak_46062	chr18	59575966	59576316	+	9.07456	NA	Intergenic	MER5B|DNA|hAT-Charlie	-15837	NM_173557	220441	Hs.165062	NM_173557		RNF152	-	ring finger protein 152	protein-coding
19-PTNLD28-TUMOR_peak_11795	chr10	5439046	5439167	+	9.07456	NA	intron (NM_001171864, intron 2 of 3)	intron (NM_001171864, intron 2 of 3)	7687	NM_001171864	79861	Hs.163079	NM_024803	HPRD:08640	TUBAL3	-	tubulin, alpha-like 3	protein-coding
19-PTNLD28-TUMOR_peak_59973	chr20	17511486	17512107	+	9.07456	NA	exon (NM_001195, exon 1 of 8)	exon (NM_001195, exon 1 of 8)	218	NM_001195	631	Hs.129702	NM_001195	HPRD:04494	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1, filensin	protein-coding
19-PTNLD28-TUMOR_peak_11933	chr10	7667942	7668228	+	9.07456	NA	intron (NM_001001851, intron 5 of 11)	LTR16E1|LTR|ERVL	-6449	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_85290	chr6	10660282	10660396	+	9.07456	NA	Intergenic	LTR12C|LTR|ERV1	34500	NR_026737	347744	Hs.61389	NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_38631	chr16	71850567	71850795	+	9.07456	NA	Intergenic	Intergenic	-7705	NM_001128	164	Hs.461253	NM_001128	HPRD:04637	AP1G1	ADTG|CLAPG1	adaptor-related protein complex 1, gamma 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_77184	chr4	140221909	140222139	+	9.07448	NA	promoter-TSS (NM_057175)	promoter-TSS (NM_057175)	340	NM_001184991	4717	Hs.84549	NM_002494	HPRD:11959	NDUFC1	KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa	protein-coding
19-PTNLD28-TUMOR_peak_82080	chr5	131595789	131596007	+	9.07448	NA	intron (NM_003687, intron 1 of 6)	intron (NM_003687, intron 1 of 6)	2547	NM_003687	8572	Hs.424312	NM_003687	HPRD:04571	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
19-PTNLD28-TUMOR_peak_35311	chr15	93354866	93355023	+	9.07315	NA	Intergenic	AluJr|SINE|Alu	16230	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_96687	chr7	156736217	156736390	+	9.06912	NA	Intergenic	Intergenic	-6114	NM_138400	64434	Hs.15825	NM_138400	HPRD:18485	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
19-PTNLD28-TUMOR_peak_6772	chr1	151430454	151430720	+	9.06912	NA	intron (NM_001194937, intron 1 of 18)	intron (NM_001194937, intron 1 of 18)	1354	NM_015100	23126	Hs.489873	NM_015100	HPRD:11445	POGZ	ZNF280E|ZNF635|ZNF635m	pogo transposable element with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_84426	chr5	178053350	178053816	+	9.06912	NA	intron (NM_020666, intron 1 of 12)	CpG	471	NM_020666	57396	Hs.406557	NM_020666	HPRD:12140	CLK4	-	CDC-like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_91078	chr7	5469617	5469736	+	9.06874	NA	Intergenic	Intergenic	-6499	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_60770	chr20	34726673	34726774	+	9.06537	NA	intron (NM_001258330, intron 3 of 20)	MIR|SINE|MIR	-15939	NM_012156	2036	Hs.437422	NM_012156	HPRD:04193	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_79077	chr5	15753092	15753256	+	9.06514	NA	intron (NM_001278317, intron 2 of 3)	intron (NM_001278317, intron 2 of 3)	-138063	NR_109945	101929472	Hs.662664	NR_109945		CTD-2350J17.1	-	uncharacterized LOC101929472	ncRNA
19-PTNLD28-TUMOR_peak_74841	chr4	26065865	26066015	+	9.06514	NA	Intergenic	LTR12C|LTR|ERV1	150126	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_41193	chr17	36127024	36127218	+	9.06514	NA	Intergenic	Intergenic	-22025	NM_001165923	6928	Hs.191144	NM_000458	HPRD:08926	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
19-PTNLD28-TUMOR_peak_20113	chr11	75508205	75508386	+	9.06514	NA	exon (NM_032564, exon 6 of 8)	exon (NM_032564, exon 6 of 8)	-17917	NM_003369	7405	Hs.202470	NM_003369		UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
19-PTNLD28-TUMOR_peak_5348	chr1	109691954	109692111	+	9.06514	NA	intron (NM_001284352, intron 1 of 20)	intron (NM_001284352, intron 1 of 20)	35447	NM_001267048	57535	Hs.708190	NM_020775		KIAA1324	EIG121	KIAA1324	protein-coding
19-PTNLD28-TUMOR_peak_83767	chr5	168358666	168358864	+	9.06514	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	-81467	NR_109897	728095	Hs.145601	NR_109897	ENSG00000248222	CTB-174D11.1	-	uncharacterized LOC728095	ncRNA
19-PTNLD28-TUMOR_peak_54518	chr2	101499755	101500015	+	9.06514	NA	intron (NM_002518, intron 1 of 20)	intron (NM_002518, intron 1 of 20)	63272	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_107757	chrX	20614116	20614250	+	9.06514	NA	Intergenic	Intergenic	-329433	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_54734	chr2	107899453	107899631	+	9.06514	NA	Intergenic	MER5B|DNA|hAT-Charlie	-395979	NM_032528	84620	Hs.98265	NM_032528	HPRD:12237	ST6GAL2	SIAT2|ST6GalII	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2	protein-coding
19-PTNLD28-TUMOR_peak_84903	chr6	3500958	3501174	+	9.06514	NA	Intergenic	Intergenic	-44273	NM_015482	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_60172	chr20	22697477	22697701	+	9.06514	NA	Intergenic	Intergenic	-109434	NR_109883	101929685	Hs.563018	NR_109883		LINC01384	-	long intergenic non-protein coding RNA 1384	ncRNA
19-PTNLD28-TUMOR_peak_59532	chr20	3099299	3099570	+	9.06514	NA	intron (NM_001267584, intron 3 of 4)	AluY|SINE|Alu	11877	NR_038395	100134015	Hs.129448	NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63420	chr21	38003177	38003284	+	9.06514	NA	Intergenic	Intergenic	-54363	NM_001146077	23562	Hs.660278	NM_012130	HPRD:05727	CLDN14	DFNB29	claudin 14	protein-coding
19-PTNLD28-TUMOR_peak_67380	chr3	31316913	31317061	+	9.06514	NA	Intergenic	L4|LINE|RTE	-257006	NM_178862	201595	Hs.475812	NM_178862		STT3B	CDG1X|SIMP|STT3-B	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_34448	chr15	74265321	74265669	+	9.06514	NA	Intergenic	Intergenic	19194	NM_001256675	9399	Hs.194816	NM_004809	HPRD:16314	STOML1	SLP-1|STORP|hUNC-24	stomatin (EPB72)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_84902	chr6	3489678	3489818	+	9.06514	NA	Intergenic	Intergenic	-32955	NM_015482	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_45926	chr18	55883341	55883754	+	9.06514	NA	intron (NM_001144970, intron 1 of 28)	L2|LINE|L2	-5207	NM_001144966	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_108945	chrX	97947934	97948114	+	9.06514	NA	Intergenic	L1PA2|LINE|L1	-1128490	NR_125391	10824	Hs.654372	NR_125391		DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53863	chr2	86205616	86205791	+	9.06514	NA	Intergenic	Intergenic	45288	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
19-PTNLD28-TUMOR_peak_71041	chr3	135377487	135377656	+	9.06514	NA	Intergenic	L1PA2|LINE|L1	-306944	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_14739	chr10	88516373	88516539	+	9.06430	NA	promoter-TSS (NM_004329)	promoter-TSS (NM_004329)	60	NM_004329	657	Hs.524477	NM_004329		BMPR1A	10q23del|ACVRLK3|ALK3|CD292|SKR5	bone morphogenetic protein receptor, type IA	protein-coding
19-PTNLD28-TUMOR_peak_74016	chr4	3767051	3767608	+	9.06174	NA	promoter-TSS (NM_000683)	promoter-TSS (NM_000683)	-967	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_106752	chr9	139441198	139441431	+	9.06174	NA	promoter-TSS (NR_039821)	promoter-TSS (NR_039821)	-603	NR_039821	100616301		NR_039821	miRBase:MI0017305	MIR4674	-	microRNA 4674	ncRNA
19-PTNLD28-TUMOR_peak_58849	chr2	232578576	232578813	+	9.06093	NA	TTS (NM_001099285)	TTS (NM_001099285)	670	NR_036052	100302285		NR_036052		MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
19-PTNLD28-TUMOR_peak_40691	chr17	22253644	22253764	+	9.06019	NA	Intergenic	ALR/Alpha|Satellite|centr	231267	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_27070	chr12	126468842	126468993	+	9.05528	NA	promoter-TSS (NR_034132)	promoter-TSS (NR_034132)	-997	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LINC00939	-	long intergenic non-protein coding RNA 939	ncRNA
19-PTNLD28-TUMOR_peak_47306	chr19	11265115	11265267	+	9.05447	NA	intron (NM_182513, intron 1 of 4)	AluSz|SINE|Alu	1293	NM_182513	147841	Hs.381225	NM_182513		SPC24	SPBC24	SPC24, NDC80 kinetochore complex component	protein-coding
19-PTNLD28-TUMOR_peak_4444	chr1	78148057	78148199	+	9.05264	NA	intron (NM_015534, intron 1 of 14)	intron (NM_015534, intron 1 of 14)	215	NM_015534	26009	Hs.480506	NM_015534	HPRD:15907	ZZZ3	ATAC1	zinc finger, ZZ-type containing 3	protein-coding
19-PTNLD28-TUMOR_peak_70521	chr3	126792798	126792967	+	9.05084	NA	Intergenic	L1MC|LINE|L1	85445	NM_032242	5361	Hs.432329	NM_032242	HPRD:11868	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
19-PTNLD28-TUMOR_peak_67678	chr3	41012704	41012867	+	9.04766	NA	Intergenic	Intergenic	-228157	NM_001904	1499	Hs.476018	NM_001904	HPRD:00286	CTNNB1	CTNNB|MRD19|armadillo	catenin (cadherin-associated protein), beta 1, 88kDa	protein-coding
19-PTNLD28-TUMOR_peak_64056	chr21	46859089	46859459	+	9.04766	NA	intron (NM_130445, intron 2 of 42)	CpG	-14289	NR_027498	378832	Hs.517353	NM_199175	HPRD:10736	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15393	chr10	104952300	104952732	+	9.04766	NA	intron (NM_012229, intron 1 of 18)	CpG	547	NM_012229	22978	Hs.97439	NM_012229	HPRD:02686	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
19-PTNLD28-TUMOR_peak_34025	chr15	65677307	65677723	+	9.04766	NA	intron (NM_020962, intron 18 of 19)	intron (NM_020962, intron 18 of 19)	-7137	NM_004884	9543	Hs.128292	NM_004884	HPRD:09169	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily, DCC subclass, member 3	protein-coding
19-PTNLD28-TUMOR_peak_98287	chr8	38650681	38650882	+	9.04766	NA	intron (NM_001146216, intron 2 of 12)	intron (NM_001146216, intron 2 of 12)	6059	NM_006283	6867	Hs.279245	NM_006283	HPRD:10391	TACC1	Ga55	transforming, acidic coiled-coil containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_94447	chr7	101331718	101331825	+	9.04766	NA	Intergenic	CpG	-59195	NM_138403	93408	Hs.247831	NM_138403	HPRD:17620	MYL10	MYLC2PL|PLRLC	myosin, light chain 10, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_65970	chr22	46443254	46443427	+	9.04766	NA	Intergenic	Intergenic	-2592	NR_027036	100271722	Hs.528519	NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
19-PTNLD28-TUMOR_peak_85773	chr6	19157805	19157971	+	9.04766	NA	intron (NR_110860, intron 3 of 10)	MER21C|LTR|ERVL	22823	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_37599	chr16	46475409	46475519	+	9.04766	NA	Intergenic	MER54A|LTR|ERVL	127545	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_78097	chr4	175443138	175443313	+	9.04766	NA	intron (NM_001256301, intron 1 of 6)	intron (NM_001256301, intron 1 of 6)	819	NM_001256301	3248	Hs.596913	NM_000860	HPRD:03406	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	hydroxyprostaglandin dehydrogenase 15-(NAD)	protein-coding
19-PTNLD28-TUMOR_peak_67034	chr3	18467117	18467625	+	9.04556	NA	promoter-TSS (NM_002971)	promoter-TSS (NM_002971)	-542	NM_001195470	6304	Hs.517717	NM_002971	HPRD:03647	SATB1	-	SATB homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_93657	chr7	80460308	80460514	+	9.04556	NA	intron (NM_006379, intron 2 of 17)	intron (NM_006379, intron 2 of 17)	88256	NM_006379	10512	Hs.269109	NM_006379	HPRD:04034	SEMA3C	SEMAE|SemE	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
19-PTNLD28-TUMOR_peak_40524	chr17	19054679	19054825	+	9.04556	NA	intron (NM_001129778, intron 3 of 3)	intron (NM_001129778, intron 3 of 3)	7433	NM_001291904	79999	Hs.677375	NM_024934		LOC79999	-	uncharacterized LOC79999	protein-coding
19-PTNLD28-TUMOR_peak_55548	chr2	128052369	128052517	+	9.04556	NA	promoter-TSS (NM_000122)	promoter-TSS (NM_000122)	-691	NM_000122	2071	Hs.469872	NM_000122	HPRD:00593	ERCC3	BTF2|GTF2H|RAD25|TFIIH|XPB	excision repair cross-complementation group 3	protein-coding
19-PTNLD28-TUMOR_peak_14181	chr10	72990530	72990722	+	9.04556	NA	intron (NM_001244889, intron 1 of 15)	intron (NM_001244889, intron 1 of 15)	-12641	NR_038453	728978	Hs.646725	NR_038453	ENSG00000237512	UNC5B-AS1	-	UNC5B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_7979	chr1	167424482	167424899	+	9.04556	NA	intron (NM_198053, intron 1 of 7)	CpG	63157	NM_198053	919	Hs.156445	NM_000734	HPRD:01729	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
19-PTNLD28-TUMOR_peak_59736	chr20	9049776	9049880	+	9.04222	NA	5' UTR (NM_001172646, exon 1 of 38)	5' UTR (NM_001172646, exon 1 of 38)	127	NM_001172646	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_25193	chr12	69490557	69490726	+	9.04222	NA	Intergenic	Intergenic	-133621	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_15947	chr10	121303705	121304009	+	9.04222	NA	Intergenic	Intergenic	-1635	NM_001005339	6001	Hs.501200	NM_002925	HPRD:04172	RGS10	-	regulator of G-protein signaling 10	protein-coding
19-PTNLD28-TUMOR_peak_43307	chr17	72357725	72357821	+	9.04222	NA	intron (NM_001080466, intron 1 of 2)	intron (NM_001080466, intron 1 of 2)	185	NM_001080466	388419	Hs.211870	NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB (POZ) domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_82662	chr5	140207502	140208092	+	9.04222	NA	exon (NM_018909, exon 1 of 4)	exon (NM_018909, exon 1 of 4)	290	NM_031849	56142	Hs.199343	NM_018909	HPRD:07324	PCDHA6	CNR2|CNRN2|CNRS2|CRNR2|PCDH-ALPHA6	protocadherin alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_38722	chr16	75032765	75033006	+	9.04222	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	-30	NM_032268	84937	Hs.427284	NM_032268	HPRD:15893	ZNRF1	NIN283	zinc and ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_71630	chr3	149265799	149265945	+	9.04222	NA	intron (NM_015472, intron 3 of 6)	intron (NM_015472, intron 3 of 6)	73504	NM_004617	7104	Hs.133527	NM_004617		TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
19-PTNLD28-TUMOR_peak_33029	chr15	34880612	34880789	+	9.04222	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-4929	NR_027410	440270	Hs.720151	NM_001023567	HPRD:18635	GOLGA8B	GOLGA5	golgin A8 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_86985	chr6	35150042	35150369	+	9.04222	NA	Intergenic	CpG	-31985	NM_152753	222663	Hs.12923	NM_152753	HPRD:18031	SCUBE3	CEGF3	signal peptide, CUB domain, EGF-like 3	protein-coding
19-PTNLD28-TUMOR_peak_90498	chr6	167027868	167028078	+	9.04222	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	12753	NM_021135	6196	Hs.655277	NM_021135	HPRD:03403	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_34231	chr15	69866620	69866832	+	9.04222	NA	Intergenic	Intergenic	12667	NR_026979	145837	Hs.410126	NR_026979		LOC145837	-	uncharacterized LOC145837	ncRNA
19-PTNLD28-TUMOR_peak_19716	chr11	69950685	69950848	+	9.04222	NA	intron (NR_030691, intron 4 of 24)	intron (NR_030691, intron 4 of 24)	19250	NR_030691	55107	Hs.503074	NM_018043	HPRD:18202	ANO1	DOG1|ORAOV2|TAOS2|TMEM16A	anoctamin 1, calcium activated chloride channel	protein-coding
19-PTNLD28-TUMOR_peak_14386	chr10	76961702	76961961	+	9.04222	NA	Intergenic	L2c|LINE|L2	-8081	NM_001184823	7417	Hs.355927	NM_003375	HPRD:01904	VDAC2	POR	voltage-dependent anion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_5090	chr1	97187708	97187961	+	9.04222	NA	promoter-TSS (NR_125356)	promoter-TSS (NR_125356)	-360	NR_125356	58155	Hs.596061	NM_021190	HPRD:12233	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_17014	chr11	8981243	8981347	+	9.04222	NA	intron (NM_001286094, intron 1 of 3)	intron (NM_001286094, intron 1 of 3)	-4927	NR_073431	493900	Hs.591981	NR_073431	ENSG00000254860	TMEM9B-AS1	C11orf18	TMEM9B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_68081	chr3	48955582	48955963	+	9.04222	NA	promoter-TSS (NM_006321)	promoter-TSS (NM_006321)	-509	NM_006321	10425	Hs.633601	NM_006321	HPRD:09286	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_21499	chr11	118401489	118401601	+	9.04222	NA	promoter-TSS (NM_032780)	promoter-TSS (NM_032780)	-55	NR_120573	101929089	Hs.666633	NR_120572		LOC101929089	-	uncharacterized LOC101929089	ncRNA
19-PTNLD28-TUMOR_peak_16999	chr11	8853502	8853687	+	9.04222	NA	intron (NM_005418, intron 3 of 22)	intron (NM_005418, intron 3 of 22)	-20712	NM_139157	6764	Hs.117715	NM_005418	HPRD:00780	ST5	DENND2B|HTS1|p126	suppression of tumorigenicity 5	protein-coding
19-PTNLD28-TUMOR_peak_107709	chrX	18904718	18905137	+	9.04222	NA	Intergenic	L2a|LINE|L2	-3487	NR_029379	100132163	Hs.607628	NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92920	chr7	65635797	65635958	+	9.04222	NA	Intergenic	Intergenic	-34382	NM_003596	8460	Hs.421194	NM_003596	HPRD:07216	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_95158	chr7	128530827	128531089	+	9.03861	NA	intron (NM_001135914, intron 19 of 36)	CpG	19815	NM_001135914	375616	Hs.371746	NM_199349		KCP	CRIM2|KCP1|NET67	kielin/chordin-like protein	protein-coding
19-PTNLD28-TUMOR_peak_63998	chr21	46294677	46294788	+	9.03718	NA	promoter-TSS (NM_004339)	promoter-TSS (NM_004339)	-914	NR_104597	754	Hs.474010	NM_004339	HPRD:04807	PTTG1IP	C21orf1|C21orf3|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_30333	chr14	53418368	53418756	+	9.03673	NA	promoter-TSS (NM_001134999)	promoter-TSS (NM_001134999)	-747	NM_006832	10979	Hs.509343	NM_006832	HPRD:06374	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	fermitin family member 2	protein-coding
19-PTNLD28-TUMOR_peak_43656	chr17	75446246	75446411	+	9.03673	NA	promoter-TSS (NM_001113496)	promoter-TSS (NM_001113496)	-285	NM_001113496	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_18190	chr11	43379580	43379721	+	9.03673	NA	promoter-TSS (NM_018259)	promoter-TSS (NM_018259)	-785	NM_018259	55761	Hs.191186	NM_018259	HPRD:15582	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
19-PTNLD28-TUMOR_peak_41231	chr17	36607253	36607447	+	9.03590	NA	intron (NM_001199417, intron 1 of 23)	intron (NM_001199417, intron 1 of 23)	22630	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000225485	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
19-PTNLD28-TUMOR_peak_87710	chr6	44594861	44595155	+	9.03501	NA	Intergenic	Intergenic	191630	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_71418	chr3	142696321	142696426	+	9.03501	NA	intron (NR_125393, intron 2 of 4)	intron (NR_125393, intron 2 of 4)	13473	NR_125393	101927832	Hs.710007	NR_125393		PAQR9-AS1	-	PAQR9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37669	chr16	48419145	48419562	+	9.03501	NA	promoter-TSS (NM_003031)	promoter-TSS (NM_003031)	-124	NM_003031	6477	Hs.706828	NM_003031	HPRD:03736	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_57988	chr2	206544755	206544935	+	9.03369	NA	Intergenic	Intergenic	-2379	NM_201266	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_76155	chr4	87846117	87846245	+	9.03237	NA	non-coding (NR_038841, exon 3 of 3)	non-coding (NR_038841, exon 3 of 3)	9821	NR_038841	100506746	Hs.657766	NR_038841	ENSG00000163633	LOC100506746	-	uncharacterized LOC100506746	ncRNA
19-PTNLD28-TUMOR_peak_70768	chr3	129824914	129825071	+	9.03237	NA	intron (NR_024252, intron 1 of 4)	intron (NR_024252, intron 1 of 4)	5284	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_35623	chr16	578808	579005	+	9.03151	NA	intron (NM_005632, intron 1 of 13)	intron (NM_005632, intron 1 of 13)	1050	NM_005632	6650	Hs.632219	NM_005632	HPRD:07220	CAPN15	SOLH	calpain 15	protein-coding
19-PTNLD28-TUMOR_peak_106986	chrUn_gl000212	23926	24018	+	9.03018	NA	promoter-TSS (NR_027278)	promoter-TSS (NR_027278)	-77	NR_027278	26080	Hs.448583	NR_027278		FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230, member C	ncRNA
19-PTNLD28-TUMOR_peak_96658	chr7	156057995	156058244	+	9.03018	NA	Intergenic	Intergenic	180163	NR_038232	285889	Hs.407095	NR_038232	ENSG00000233878	LOC285889	-	uncharacterized LOC285889	ncRNA
19-PTNLD28-TUMOR_peak_96075	chr7	143492872	143493017	+	9.03018	NA	Intergenic	Intergenic	-14139	NR_110549	653691	Hs.632030	NR_110549		FAM115D	FAM139B	family with sequence similarity 139, member B	pseudo
19-PTNLD28-TUMOR_peak_66341	chr3	7546960	7547061	+	9.03018	NA	intron (NM_181874, intron 7 of 10)	MSTD-int|LTR|ERVL-MaLR	29961	NR_046606	100873937	Hs.570608	NR_046606		GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34588	chr15	75939866	75940205	+	9.03018	NA	Intergenic	CpG	-1313	NM_153271	257364	Hs.8705	NM_153271		SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
19-PTNLD28-TUMOR_peak_89204	chr6	116329676	116329811	+	9.03018	NA	intron (NM_002031, intron 1 of 7)	intron (NM_002031, intron 1 of 7)	-30151	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_93698	chr7	82327343	82327445	+	9.03018	NA	Intergenic	L1ME2z|LINE|L1	-254363	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_61598	chr20	47024178	47024331	+	9.03018	NA	Intergenic	Intergenic	35600	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_101072	chr8	133511438	133511646	+	9.03018	NA	Intergenic	Intergenic	-18538	NM_004519	3786	Hs.374023	NM_004519	HPRD:09077	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel, KQT-like subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_24984	chr12	64779363	64779488	+	9.03018	NA	intron (NM_001099676, intron 1 of 10)	LTR8|LTR|ERV1	4920	NM_001170633	115749	Hs.535190	NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_42402	chr17	53685173	53685526	+	9.03018	NA	Intergenic	Intergenic	114876	NM_018286	55273	Hs.173233	NM_018286	HPRD:07719	TMEM100	-	transmembrane protein 100	protein-coding
19-PTNLD28-TUMOR_peak_98855	chr8	56787634	56787747	+	9.03018	NA	Intergenic	Intergenic	-4696	NM_001111097	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_6693	chr1	150536611	150536753	+	9.02748	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	10346	NR_104133	574406	Hs.516243	NM_001025493		ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87657	chr6	44042158	44042527	+	9.02701	NA	Intergenic	Intergenic	52849	NM_032111	64928	Hs.311190	NM_032111	HPRD:14741	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
19-PTNLD28-TUMOR_peak_42672	chr17	57920262	57920407	+	9.02577	NA	Intergenic	AluSx1|SINE|Alu	1707	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
19-PTNLD28-TUMOR_peak_62069	chr20	52365790	52365906	+	9.02436	NA	Intergenic	MIRb|SINE|MIR	126400	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_87681	chr6	44215210	44215681	+	9.02138	NA	intron (NM_001271972, intron 1 of 11)	CpG	750	NM_007355	3326	Hs.509736	NM_007355	HPRD:06763	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90kDa alpha (cytosolic), class B member 1	protein-coding
19-PTNLD28-TUMOR_peak_15256	chr10	102791182	102791430	+	9.01903	NA	promoter-TSS (NM_001195263)	promoter-TSS (NM_001195263)	310	NM_030971	81855	Hs.283844	NM_030971	HPRD:15329	SFXN3	BA108L7.2|SFX3	sideroflexin 3	protein-coding
19-PTNLD28-TUMOR_peak_78215	chr4	184019617	184019813	+	9.01903	NA	promoter-TSS (NM_024949)	promoter-TSS (NM_024949)	637	NR_024008	152641	Hs.745108	NM_153008	HPRD:08082	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_84603	chr5	180644805	180644941	+	9.01619	NA	Intergenic	Intergenic	4760	NR_039781	100616342		NR_039781	miRBase:MI0017265	MIR4638	-	microRNA 4638	ncRNA
19-PTNLD28-TUMOR_peak_73538	chr3	195716465	195717004	+	9.01613	NA	intron (NR_003264, intron 1 of 16)	CpG	416	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_8366	chr1	176175495	176175631	+	9.01613	NA	intron (NM_001001740, intron 1 of 18)	intron (NM_001001740, intron 1 of 18)	817	NM_001001740	64326	Hs.523744	NM_022457	HPRD:07455	RFWD2	COP1|RNF200	ring finger and WD repeat domain 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_28390	chr13	60970961	60971308	+	9.01533	NA	promoter-TSS (NM_001146070)	promoter-TSS (NM_001146070)	-293	NM_001146070	81550	Hs.525061	NM_030794	HPRD:11625	TDRD3	-	tudor domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_3553	chr1	53662701	53662868	+	9.01533	NA	intron (NM_000098, intron 1 of 4)	CpG	683	NM_000098	1376	Hs.713535	NM_000098	HPRD:02802	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_7501	chr1	159041873	159042040	+	9.01411	NA	intron (NM_004833, intron 2 of 5)	intron (NM_004833, intron 2 of 5)	4691	NM_004833	9447	Hs.733411	NM_004833	HPRD:05202	AIM2	PYHIN4	absent in melanoma 2	protein-coding
19-PTNLD28-TUMOR_peak_69394	chr3	98965188	98965403	+	9.01411	NA	Intergenic	LTR50|LTR|ERVL	-344762	NM_080927	131566	Hs.203691	NM_080927	HPRD:10567	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_85600	chr6	15526415	15526619	+	9.01411	NA	intron (NM_032122, intron 8 of 9)	intron (NM_032122, intron 8 of 9)	136772	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_7989	chr1	167599555	167599724	+	9.01411	NA	5' UTR (NM_052862, exon 1 of 7)	5' UTR (NM_052862, exon 1 of 7)	165	NM_052862	92241	Hs.493867	NM_052862	HPRD:10077	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_107948	chrX	38591500	38591721	+	9.01411	NA	Intergenic	L1MC4a|LINE|L1	-69075	NM_021242	58526	Hs.522605	NM_021242	HPRD:06732	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_77478	chr4	148079164	148079575	+	9.01411	NA	Intergenic	Intergenic	-212335	NM_031956	83894	Hs.378893	NM_031956	HPRD:14866	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
19-PTNLD28-TUMOR_peak_55726	chr2	131622477	131622796	+	9.01411	NA	Intergenic	Intergenic	-51588	NM_015320	50649	Hs.469935	NM_015320	HPRD:05559	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_17036	chr11	9379568	9379692	+	9.01411	NA	Intergenic	LTR10C|LTR|ERV1	-26539	NM_006391	10527	Hs.744911	NM_006391	HPRD:09280	IPO7	Imp7|RANBP7	importin 7	protein-coding
19-PTNLD28-TUMOR_peak_72785	chr3	184208909	184209123	+	9.01411	NA	Intergenic	Intergenic	-70571	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_11903	chr10	7127967	7128170	+	9.01411	NA	Intergenic	Intergenic	306508	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
19-PTNLD28-TUMOR_peak_65919	chr22	45831648	45831837	+	9.01411	NA	Intergenic	Intergenic	22170	NM_015653	26150	Hs.475110	NM_015653	HPRD:11493	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
19-PTNLD28-TUMOR_peak_55169	chr2	115512661	115513069	+	9.01411	NA	intron (NM_001178036, intron 2 of 26)	intron (NM_001178036, intron 2 of 26)	293685	NM_001178036	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_88960	chr6	106959671	106959797	+	9.01411	NA	promoter-TSS (NM_001624)	promoter-TSS (NM_001624)	4	NM_001624	202	Hs.724262	NM_001624	HPRD:18576	AIM1	CRYBG1|ST4	absent in melanoma 1	protein-coding
19-PTNLD28-TUMOR_peak_70390	chr3	124939646	124940038	+	9.01411	NA	Intergenic	L2|LINE|L2	-8233	NM_024628	84561	Hs.658514	NM_024628	HPRD:11563	SLC12A8	CCC9	solute carrier family 12, member 8	protein-coding
19-PTNLD28-TUMOR_peak_97241	chr8	12500207	12500301	+	9.01411	NA	intron (NR_047662, intron 2 of 8)	intron (NR_047662, intron 2 of 8)	22866	NR_047662	729732	Hs.322761	NR_047662		LOC729732	-	uncharacterized LOC729732	ncRNA
19-PTNLD28-TUMOR_peak_48995	chr19	39798121	39798435	+	9.01411	NA	exon (NM_020862, exon 2 of 2)	exon (NM_020862, exon 2 of 2)	7698	NM_020862	57622	Hs.97860	NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_28220	chr13	49794022	49794320	+	9.01411	NA	promoter-TSS (NM_001507)	promoter-TSS (NM_001507)	-303	NM_001507	2862	Hs.248126	NM_001507	HPRD:04197	MLNR	GPR38|MTLR1	motilin receptor	protein-coding
19-PTNLD28-TUMOR_peak_25458	chr12	81331217	81331356	+	9.01411	NA	intron (NM_004664, intron 1 of 5)	CpG	408	NM_004664	8825	Hs.144333	NM_004664	HPRD:04542	LIN7A	LIN-7A|LIN7|MALS-1|TIP-33|VELI1	lin-7 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_109206	chrX	112145225	112145449	+	9.01411	NA	Intergenic	L2c|LINE|L2	-61294	NM_133265	154796	Hs.528051	NM_133265	HPRD:02327	AMOT	-	angiomotin	protein-coding
19-PTNLD28-TUMOR_peak_91963	chr7	34100326	34100477	+	9.01411	NA	intron (NM_133468, intron 11 of 15)	MIRb|SINE|MIR	155878	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_7823	chr1	164307285	164307394	+	9.01411	NA	Intergenic	Intergenic	-221258	NM_001204963	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_53595	chr2	75053589	75053761	+	9.01411	NA	Intergenic	Zaphod3|DNA|hAT-Tip100	-6107	NM_000189	3099	Hs.406266	NM_000189	HPRD:03080	HK2	HKII|HXK2	hexokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_9933	chr1	211751180	211751291	+	9.01383	NA	intron (NM_021194, intron 1 of 1)	CpG	864	NM_021194	7779	Hs.519469	NM_021194		SLC30A1	ZNT1|ZRC1	solute carrier family 30 (zinc transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_95180	chr7	128829062	128829280	+	9.01383	NA	exon (NM_005631, exon 1 of 12)	exon (NM_005631, exon 1 of 12)	458	NM_005631	6608	Hs.437846	NM_005631	HPRD:03294	SMO	FZD11|Gx|SMOH	smoothened, frizzled class receptor	protein-coding
19-PTNLD28-TUMOR_peak_84277	chr5	176513907	176514064	+	9.01383	NA	5' UTR (NM_002011, exon 1 of 18)	5' UTR (NM_002011, exon 1 of 18)	112	NM_213647	2264	Hs.165950	NM_002011	HPRD:00625	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_49168	chr19	41903641	41903781	+	9.01383	NA	promoter-TSS (NM_000709)	promoter-TSS (NM_000709)	17	NM_001164783	593	Hs.433307	NM_000709	HPRD:02009	BCKDHA	BCKDE1A|MSU|MSUD1|OVD1A	branched chain keto acid dehydrogenase E1, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_47612	chr19	14332293	14332457	+	9.01383	NA	Intergenic	Intergenic	-15378	NM_014921	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_54668	chr2	106027139	106027304	+	9.01383	NA	intron (NM_201557, intron 1 of 5)	intron (NM_201557, intron 1 of 5)	-11540	NM_001450	2274	Hs.443687	NM_001450	HPRD:04026	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
19-PTNLD28-TUMOR_peak_15150	chr10	99674656	99674989	+	9.01275	NA	intron (NM_018058, intron 5 of 14)	intron (NM_018058, intron 5 of 14)	64827	NM_001010917	401647	Hs.567524	NM_001010917	HPRD:16579	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_87136	chr6	36808338	36808707	+	9.01275	NA	Intergenic	CpG	-1302	NM_020939	57699	Hs.657869	NM_020939	HPRD:05018	CPNE5	COPN5|CPN5	copine V	protein-coding
19-PTNLD28-TUMOR_peak_22899	chr12	8088990	8089085	+	9.01275	NA	promoter-TSS (NM_006931)	promoter-TSS (NM_006931)	-145	NM_006931	6515	Hs.419240	NM_006931	HPRD:00686	SLC2A3	GLUT3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_82597	chr5	139537104	139537271	+	9.01275	NA	Intergenic	Intergenic	-17466	NM_032412	84418	Hs.529798	NM_032412		CYSTM1	C5orf32	cysteine-rich transmembrane module containing 1	protein-coding
19-PTNLD28-TUMOR_peak_57195	chr2	178573837	178574178	+	9.01275	NA	intron (NM_001077197, intron 14 of 20)	L2c|LINE|L2	-90313	NM_152275	92104	Hs.128384	NM_152275		TTC30A	-	tetratricopeptide repeat domain 30A	protein-coding
19-PTNLD28-TUMOR_peak_40430	chr17	17822627	17822720	+	9.01275	NA	intron (NM_001033551, intron 1 of 13)	intron (NM_001033551, intron 1 of 13)	53111	NM_001082968	146691	Hs.462379	NM_144678	HPRD:18213	TOM1L2	-	target of myb1-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_27305	chr12	133404472	133404590	+	9.01275	NA	intron (NM_001172557, intron 1 of 15)	intron (NM_001172557, intron 1 of 15)	757	NM_005895	2802	Hs.507333	NM_005895	HPRD:03990	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
19-PTNLD28-TUMOR_peak_42247	chr17	48536586	48536745	+	9.01275	NA	intron (NM_001288968, intron 2 of 16)	AluJb|SINE|Alu	-9025	NR_110232	80221	Hs.288959	NM_025149	HPRD:13380	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_13165	chr10	43278736	43278837	+	9.01222	NA	intron (NM_014753, intron 1 of 22)	intron (NM_014753, intron 1 of 22)	832	NM_014753	9790	Hs.10848	NM_014753	HPRD:10689	BMS1	ACC|BMS1L	BMS1 ribosome biogenesis factor	protein-coding
19-PTNLD28-TUMOR_peak_21118	chr11	111410922	111411124	+	9.01222	NA	promoter-TSS (NM_001258391)	promoter-TSS (NM_001258391)	-210	NM_001258390	143903	Hs.503831	NM_178834	HPRD:17299	LAYN	-	layilin	protein-coding
19-PTNLD28-TUMOR_peak_82620	chr5	139702933	139703224	+	9.01222	NA	Intergenic	Intergenic	-20389	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_85212	chr6	8230668	8230855	+	9.01222	NA	Intergenic	Intergenic	-127933	NM_004280	9521	Hs.602353	NM_004280	HPRD:10931	EEF1E1	AIMP3|P18	eukaryotic translation elongation factor 1 epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_41387	chr17	38646259	38646480	+	9.01222	NA	intron (NM_032865, intron 2 of 12)	intron (NM_032865, intron 2 of 12)	11485	NM_032865	84951	Hs.438292	NM_032865	HPRD:12223	TNS4	CTEN	tensin 4	protein-coding
19-PTNLD28-TUMOR_peak_74856	chr4	26320643	26321010	+	9.01222	NA	promoter-TSS (NM_005349)	promoter-TSS (NM_005349)	-506	NM_203283	3516	Hs.479396	NM_005349	HPRD:00920	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
19-PTNLD28-TUMOR_peak_55017	chr2	113340029	113340194	+	9.01076	NA	Intergenic	AluSx1|SINE|Alu	-1925	NM_032309	84269	Hs.375707	NM_032309	HPRD:13046	CHCHD5	C2orf9|MIC14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_24461	chr12	53626724	53626832	+	9.00633	NA	promoter-TSS (NM_000966)	promoter-TSS (NM_000966)	-738	NM_001243730	5916	Hs.1497	NM_000966	HPRD:01573	RARG	NR1B3|RARC	retinoic acid receptor, gamma	protein-coding
19-PTNLD28-TUMOR_peak_91215	chr7	6943617	6943736	+	9.00610	NA	Intergenic	LTR7|LTR|ERV1	-77750	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_56908	chr2	171571076	171571296	+	9.00610	NA	promoter-TSS (NR_027433)	promoter-TSS (NR_027433)	-109	NR_027433	440925	Hs.668461	NM_001013712	HPRD:18455	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
19-PTNLD28-TUMOR_peak_41812	chr17	43396857	43397016	+	9.00598	NA	Intergenic	Intergenic	-2506	NM_003954	9020	Hs.404183	NM_003954		MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_48923	chr19	39152740	39152931	+	9.00521	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	14568	NM_004924	81	Hs.270291	NM_004924		ACTN4	ACTININ-4|FSGS|FSGS1	actinin, alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_11029	chr1	234864005	234864213	+	9.00521	NA	non-coding (NR_038856, exon 3 of 3)	non-coding (NR_038856, exon 3 of 3)	4320	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_66300	chr3	5300296	5300672	+	9.00313	NA	Intergenic	Intergenic	-8544	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_85885	chr6	21731738	21731881	+	9.00313	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	65134	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_21584	chr11	119303279	119303803	+	9.00313	NA	intron (NR_034160, intron 2 of 3)	intron (NR_034160, intron 2 of 3)	-9295	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
19-PTNLD28-TUMOR_peak_17764	chr11	28778555	28778704	+	9.00313	NA	Intergenic	Intergenic	-279534	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_60333	chr20	25842021	25842180	+	8.99923	NA	Intergenic	SST1|Satellite|centr	-7443	NR_110001	101926935	Hs.737440	NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
19-PTNLD28-TUMOR_peak_19175	chr11	64513442	64513674	+	8.99765	NA	promoter-TSS (NM_153819)	promoter-TSS (NM_153819)	-630	NM_153819	10235	Hs.99491	NM_005825	HPRD:09278	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_2288	chr1	35037454	35037674	+	8.99623	NA	Intergenic	L1HS|LINE|L1	-183084	NM_005268	2709	Hs.198249	NM_005268	HPRD:06840	GJB5	CX31.1	gap junction protein, beta 5, 31.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_1643	chr1	26362581	26362775	+	8.99623	NA	3' UTR (NM_004455, exon 11 of 11)	3' UTR (NM_004455, exon 11 of 11)	9926	NM_001004434	7780	Hs.143545	NM_032513	HPRD:18057	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 (zinc transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_2737	chr1	40775156	40775267	+	8.99623	NA	intron (NM_001852, intron 16 of 31)	intron (NM_001852, intron 16 of 31)	7728	NM_001852	1298	Hs.418012	NM_001852	HPRD:00373	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen, type IX, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_86487	chr6	30614718	30614835	+	8.99043	NA	promoter-TSS (NM_001161376)	promoter-TSS (NM_001161376)	-40	NM_145029	221545	Hs.591787	NM_145029	HPRD:12851	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
19-PTNLD28-TUMOR_peak_43050	chr17	65361853	65362193	+	8.98883	NA	intron (NM_002816, intron 1 of 10)	intron (NM_002816, intron 1 of 10)	698	NM_174871	5718	Hs.592689	NM_002816		PSMD12	Rpn5|p55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding
19-PTNLD28-TUMOR_peak_41323	chr17	37895470	37895917	+	8.98808	NA	promoter-TSS (NM_001242443)	promoter-TSS (NM_001242443)	-527	NM_001242443	2886	Hs.86859	NM_005310	HPRD:03311	GRB7	-	growth factor receptor-bound protein 7	protein-coding
19-PTNLD28-TUMOR_peak_28104	chr13	45916425	45916541	+	8.98725	NA	intron (NR_024458, intron 1 of 10)	AluJr|SINE|Alu	1003	NR_024458	100190939	Hs.375766	NR_024458	ENSG00000170919	TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18493	chr11	47865787	47865989	+	8.98725	NA	intron (NM_015231, intron 2 of 35)	L2a|LINE|L2	4169	NM_015231	23279	Hs.744107	NM_015231	HPRD:16254	NUP160	-	nucleoporin 160kDa	protein-coding
19-PTNLD28-TUMOR_peak_68090	chr3	49055454	49055623	+	8.98638	NA	exon (NM_001276405, exon 2 of 12)	exon (NM_001276405, exon 2 of 12)	503	NM_001009996	55152	Hs.654815	NM_018114	HPRD:08549	DALRD3	-	DALR anticodon binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_9363	chr1	202662171	202662332	+	8.98600	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	17300	NM_177402	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_19720	chr11	70037738	70037884	+	8.98600	NA	Intergenic	Intergenic	-11458	NM_003824	8772	Hs.86131	NM_003824	HPRD:03909	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_49045	chr19	40549378	40549496	+	8.98600	NA	intron (NM_001005851, intron 4 of 4)	L1PA4|LINE|L1	12678	NM_001005851	163131	Hs.101139	NM_001005851	HPRD:11243	ZNF780B	ZNF779	zinc finger protein 780B	protein-coding
19-PTNLD28-TUMOR_peak_1886	chr1	29077915	29078155	+	8.98600	NA	intron (NM_001172828, intron 3 of 3)	intron (NM_001172828, intron 3 of 3)	14583	NM_001172828	51441	Hs.532286	NM_016258	HPRD:06587	YTHDF2	HGRG8|NY-REN-2	YTH domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_343	chr1	6169017	6169118	+	8.98600	NA	intron (NM_015557, intron 38 of 41)	intron (NM_015557, intron 38 of 41)	62893	NM_001199863	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_77153	chr4	139797124	139797364	+	8.98600	NA	Intergenic	Intergenic	-139669	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61463	chr20	45418187	45418520	+	8.98600	NA	Intergenic	L2|LINE|L2	80074	NM_030777	81031	Hs.305971	NM_030777	HPRD:05851	SLC2A10	ATS|GLUT10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_84361	chr5	177357198	177357547	+	8.98600	NA	Intergenic	L2a|LINE|L2	55110	NR_003615	728554	Hs.535769	NR_003615	ENSG00000170089	LOC728554	-	THO complex 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_61831	chr20	49196652	49196754	+	8.98600	NA	intron (NM_001278618, intron 7 of 8)	intron (NM_001278618, intron 7 of 8)	-5620	NR_030375	693230		NR_030375	miRBase:MI0003660	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
19-PTNLD28-TUMOR_peak_65316	chr22	36552664	36552996	+	8.98600	NA	intron (NR_027833, intron 1 of 3)	L2b|LINE|L2	4147	NR_027833	80833	Hs.474737	NM_014349	HPRD:06264	APOL3	APOLIII|CG121	apolipoprotein L, 3	protein-coding
19-PTNLD28-TUMOR_peak_100334	chr8	120165130	120165456	+	8.98600	NA	Intergenic	Intergenic	-55317	NM_052886	114569	Hs.201083	NM_052886	HPRD:14351	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_28280	chr13	52093136	52093259	+	8.98595	NA	Intergenic	Intergenic	-33528	NR_039852	100616423		NR_039852	miRBase:MI0017336	MIR4703	-	microRNA 4703	ncRNA
19-PTNLD28-TUMOR_peak_67887	chr3	45802761	45802863	+	8.98595	NA	intron (NM_022405, intron 8 of 9)	intron (NM_022405, intron 8 of 9)	35223	NM_022405	54716	Hs.413095	NM_020208	HPRD:16128	SLC6A20	SIT1|XT3|Xtrp3	solute carrier family 6 (proline IMINO transporter), member 20	protein-coding
19-PTNLD28-TUMOR_peak_99798	chr8	102339276	102339405	+	8.98595	NA	Intergenic	Intergenic	-41781	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	-	nascent-polypeptide-associated complex alpha polypeptide pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_25326	chr12	72914252	72914358	+	8.98595	NA	intron (NM_013381, intron 6 of 18)	L1PA3|LINE|L1	-247016	NR_026836	283392	Hs.363603	NM_001025457	HPRD:18764	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_67410	chr3	32318183	32318312	+	8.98595	NA	intron (NM_178868, intron 1 of 3)	intron (NM_178868, intron 1 of 3)	38076	NM_178868	152189	Hs.154986	NM_178868	HPRD:06989	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF-like MARVEL transmembrane domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_12557	chr10	27171078	27171181	+	8.98595	NA	Intergenic	Intergenic	-21113	NM_001178121	10006	Hs.508148	NM_005470	HPRD:04336	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl-interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_78054	chr4	173578327	173578496	+	8.98595	NA	intron (NM_001034845, intron 5 of 12)	intron (NM_001034845, intron 5 of 12)	-511493	NM_017423	51809	Hs.548088	NM_017423	HPRD:10386	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_99172	chr8	71971466	71971617	+	8.98595	NA	Intergenic	Intergenic	297205	NM_172059	2138	Hs.491997	NM_000503	HPRD:03388	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_42810	chr17	61372817	61373023	+	8.98595	NA	intron (NM_025185, intron 7 of 24)	7SK|RNA|RNA	145287	NM_001017917	1534	Hs.355264	NM_001915	HPRD:02485	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
19-PTNLD28-TUMOR_peak_2271	chr1	34817349	34817571	+	8.98595	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	174907	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_109125	chrX	107682843	107683072	+	8.98595	NA	promoter-TSS (NM_001847)	promoter-TSS (NM_001847)	-117	NM_000495	1287	Hs.369089	NM_000495	HPRD:02363	COL4A5	ASLN|ATS|CA54	collagen, type IV, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_9044	chr1	196868037	196868164	+	8.98595	NA	intron (NM_001201551, intron 1 of 9)	MLT1F1|LTR|ERVL-MaLR	10956	NM_001201551	10877	Hs.710100	NM_006684	HPRD:05627	CFHR4	CFHL4|FHR-4|FHR4	complement factor H-related 4	protein-coding
19-PTNLD28-TUMOR_peak_25230	chr12	70322990	70323256	+	8.98595	NA	Intergenic	Intergenic	150391	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_108994	chrX	101967672	101967862	+	8.98595	NA	intron (NM_138437, intron 1 of 3)	CpG	663	NM_138437	114928	Hs.522729	NM_138437	HPRD:06612	GPRASP2	GASP2	G protein-coupled receptor associated sorting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_35034	chr15	85987096	85987389	+	8.98595	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	63395	NM_006738	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_37771	chr16	50572537	50572765	+	8.98595	NA	Intergenic	Intergenic	-9590	NM_033119	85407	Hs.187578	NM_033119		NKD1	Naked1	naked cuticle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_108684	chrX	70865620	70865715	+	8.98595	NA	intron (NR_001568, intron 1 of 3)	SVA_B|Other|Other	-27300	NM_001142797	2833	Hs.198252	NM_001504	HPRD:02936	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	chemokine (C-X-C motif) receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_93747	chr7	84326989	84327118	+	8.98595	NA	Intergenic	Intergenic	165261	NR_110079	101927378	Hs.539042	NR_110079	ENSG00000235139	LOC101927378	-	uncharacterized LOC101927378	ncRNA
19-PTNLD28-TUMOR_peak_12586	chr10	27935267	27935384	+	8.98595	NA	Intergenic	Intergenic	-98219	NR_121652	101929202	Hs.568843	NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1635	chr1	26249071	26249284	+	8.98595	NA	Intergenic	Intergenic	-15809	NM_203399	3925	Hs.209983	NM_005563	HPRD:01047	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
19-PTNLD28-TUMOR_peak_80035	chr5	56862824	56862952	+	8.98595	NA	Intergenic	Intergenic	-3281	NR_120607	100996645	Hs.582496	NR_120607	ENSG00000249436	LINCR-0003	-	uncharacterized LincR-0003	ncRNA
19-PTNLD28-TUMOR_peak_11555	chr1	248691727	248691827	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	6829	NM_001013355	391211	Hs.553784	NM_001013355	HPRD:18487	OR2G6	-	olfactory receptor, family 2, subfamily G, member 6	protein-coding
19-PTNLD28-TUMOR_peak_15857	chr10	119125234	119125401	+	8.98595	NA	intron (NM_173791, intron 1 of 4)	intron (NM_173791, intron 1 of 4)	9620	NM_173791	118987	Hs.501149	NM_173791		PDZD8	PDZK8|bA129M16.2	PDZ domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_103939	chr9	78818420	78818539	+	8.98595	NA	intron (NM_001190482, intron 20 of 36)	MLT1E3|LTR|ERVL-MaLR	190965	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_10102	chr1	219590108	219590206	+	8.98595	NA	Intergenic	MER66C|LTR|ERV1	241846	NM_001300772	127018	Hs.657617	NM_138794	HPRD:14335	LYPLAL1	-	lysophospholipase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_93673	chr7	81099465	81099573	+	8.98595	NA	Intergenic	Intergenic	299933	NM_001010933	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_8003	chr1	167752335	167752512	+	8.98595	NA	intron (NM_003953, intron 5 of 5)	intron (NM_003953, intron 5 of 5)	61236	NM_001146191	9019	Hs.493919	NM_003953	HPRD:05086	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
19-PTNLD28-TUMOR_peak_53708	chr2	83823013	83823152	+	8.98595	NA	Intergenic	L3|LINE|CR1	-694724	NR_003663	388965	Hs.664098	NM_001013648	HPRD:18390	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_77800	chr4	157933978	157934255	+	8.98595	NA	Intergenic	Intergenic	-41570	NR_036641	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_46845	chr19	5250168	5250386	+	8.98595	NA	intron (NM_130854, intron 6 of 32)	intron (NM_130854, intron 6 of 32)	90537	NM_002850	5802	Hs.744928	NM_002850	HPRD:03344	PTPRS	PTPSIGMA	protein tyrosine phosphatase, receptor type, S	protein-coding
19-PTNLD28-TUMOR_peak_20766	chr11	96579666	96579786	+	8.98595	NA	Intergenic	Intergenic	-339685	NR_047481	100874053	Hs.742044	NR_047481		JRKL-AS1	-	JRKL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26836	chr12	122766755	122766867	+	8.98595	NA	intron (NM_198240, intron 19 of 23)	intron (NM_198240, intron 19 of 23)	-15743	NM_022916	65082	Hs.592009	NM_022916	HPRD:15651	VPS33A	-	vacuolar protein sorting 33 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_46291	chr18	73717511	73717826	+	8.98595	NA	Intergenic	Intergenic	-117285	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA
19-PTNLD28-TUMOR_peak_68949	chr3	70599981	70600125	+	8.98595	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	514021	NM_001244813	27086	Hs.59368	NM_032682	HPRD:18518	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
19-PTNLD28-TUMOR_peak_57839	chr2	202798516	202798760	+	8.98595	NA	Intergenic	Intergenic	-100672	NM_003507	8324	Hs.173859	NM_003507	HPRD:04560	FZD7	FzE3	frizzled class receptor 7	protein-coding
19-PTNLD28-TUMOR_peak_57616	chr2	197104570	197104682	+	8.98595	NA	intron (NM_020760, intron 21 of 28)	intron (NM_020760, intron 21 of 28)	-20122	NR_110225	101927482	Hs.191841	NR_110225	ENSG00000229056	LOC101927482	-	uncharacterized LOC101927482	ncRNA
19-PTNLD28-TUMOR_peak_29780	chr14	33029620	33029719	+	8.98595	NA	intron (NM_004274, intron 4 of 13)	intron (NM_004274, intron 4 of 13)	231190	NM_004274	9472	Hs.509083	NM_004274	HPRD:05257	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
19-PTNLD28-TUMOR_peak_69223	chr3	82194992	82195123	+	8.98595	NA	Intergenic	MLT2B5|LTR|ERVL	-384107	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_7671	chr1	161261414	161261524	+	8.98595	NA	Intergenic	Intergenic	18293	NM_000530	4359	Hs.591486	NM_000530	HPRD:01159	MPZ	CHM|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
19-PTNLD28-TUMOR_peak_45065	chr18	27967608	27967711	+	8.98595	NA	Intergenic	Intergenic	88783	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	ncRNA
19-PTNLD28-TUMOR_peak_65047	chr22	30512475	30512618	+	8.98595	NA	intron (NM_152510, intron 7 of 10)	intron (NM_152510, intron 7 of 10)	-36077	NR_110541	101929664	Hs.592197	NR_110541	ENSG00000227117	HORMAD2-AS1	MTMR3-AS1	HORMAD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4378	chr1	75603141	75603252	+	8.98595	NA	intron (NM_001001933, intron 4 of 9)	intron (NM_001001933, intron 4 of 9)	2629	NM_001256114	431707	Hs.403934	NM_001001933	HPRD:17275	LHX8	LHX7	LIM homeobox 8	protein-coding
19-PTNLD28-TUMOR_peak_80136	chr5	59948157	59948365	+	8.98595	NA	intron (NM_018369, intron 2 of 10)	MER72B|LTR|ERV1	47732	NM_001145208	55789	Hs.482233	NM_018369	HPRD:16794	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_27426	chr13	22472723	22472857	+	8.98595	NA	Intergenic	Intergenic	-20491	NR_047040	100874182	Hs.148951	NR_047040		LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
19-PTNLD28-TUMOR_peak_20727	chr11	95896133	95896314	+	8.98595	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-178379	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_31947	chr14	98130254	98130353	+	8.98595	NA	intron (NR_033943, intron 2 of 3)	L2c|LINE|L2	22692	NR_033943	100129345	Hs.23632	NR_033943	ENSG00000197176	LOC100129345	-	uncharacterized LOC100129345	ncRNA
19-PTNLD28-TUMOR_peak_110040	chrX	154322860	154323046	+	8.98595	NA	intron (NM_001242640, intron 7 of 10)	L1MD2|LINE|L1	23258	NM_001242640	79184	Hs.558537	NM_024332	HPRD:06465	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex, subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_16707	chr11	3058655	3058752	+	8.98595	NA	intron (NM_001014437, intron 7 of 22)	intron (NM_001014437, intron 7 of 22)	19978	NM_001014437	833	Hs.274873	NM_001751	HPRD:00464	CARS	CARS1|CYSRS|MGC:11246	cysteinyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_106695	chr9	138403447	138403583	+	8.98595	NA	Intergenic	L1MB7|LINE|L1	-5222	NR_121579	101928525	Hs.713076	NR_121579	ENSG00000226706	LOC101928525	-	uncharacterized LOC101928525	ncRNA
19-PTNLD28-TUMOR_peak_109024	chrX	102977616	102977750	+	8.98595	NA	intron (NM_001172285, intron 5 of 6)	intron (NM_001172285, intron 5 of 6)	5869	NM_001024452	441509	Hs.533289	NM_001024452	ENSG00000188828	GLRA4	-	glycine receptor, alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_79285	chr5	30390346	30390510	+	8.98595	NA	Intergenic	LTR33|LTR|ERVL	-803334	NM_004932	1004	Hs.124776	NM_004932	HPRD:04305	CDH6	CAD6|KCAD	cadherin 6, type 2, K-cadherin (fetal kidney)	protein-coding
19-PTNLD28-TUMOR_peak_33027	chr15	34875748	34876030	+	8.98595	NA	promoter-TSS (NR_027410)	promoter-TSS (NR_027410)	-118	NR_027410	440270	Hs.720151	NM_001023567	HPRD:18635	GOLGA8B	GOLGA5	golgin A8 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_67934	chr3	46653917	46654187	+	8.98595	NA	5' UTR (NM_001195442, exon 1 of 3)	5' UTR (NM_001195442, exon 1 of 3)	127	NM_001195442	100132146	Hs.679623	NM_001195442		LOC100132146	-	uncharacterized LOC100132146	protein-coding
19-PTNLD28-TUMOR_peak_29024	chr13	110280619	110280721	+	8.98595	NA	Intergenic	Intergenic	-99951	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
19-PTNLD28-TUMOR_peak_99010	chr8	66746922	66747023	+	8.98595	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	6997	NM_001242318	5150	Hs.527119	NM_002603		PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
19-PTNLD28-TUMOR_peak_41639	chr17	41633706	41633893	+	8.98595	NA	Intergenic	Intergenic	-9999	NM_001079675	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_92508	chr7	49705811	49705933	+	8.98595	NA	Intergenic	L1P1|LINE|L1	-107385	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45757	chr18	48311225	48311533	+	8.98595	NA	Intergenic	Intergenic	35055	NM_001127176	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_16407	chr10	135333785	135334014	+	8.98595	NA	Intergenic	CpG	-6968	NM_000773	1571	Hs.12907	NM_000773	HPRD:11813	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450, family 2, subfamily E, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_29681	chr14	29220769	29220907	+	8.98595	NA	intron (NR_125758, intron 2 of 6)	intron (NR_125758, intron 2 of 6)	13687	NR_125758	103695363	Hs.569360	NR_125758		FOXG1-AS1	-	FOXG1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_69918	chr3	114217666	114217826	+	8.98595	NA	intron (NR_121661, intron 1 of 2)	intron (NR_121661, intron 1 of 2)	45306	NR_121661	101929754	Hs.614195	NR_121661		LOC101929754	-	uncharacterized LOC101929754	ncRNA
19-PTNLD28-TUMOR_peak_74737	chr4	22148423	22148656	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	192750	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
19-PTNLD28-TUMOR_peak_3889	chr1	60413120	60413245	+	8.98595	NA	Intergenic	Intergenic	-20759	NM_000775	1573	Hs.152096	NM_000775	HPRD:03159	CYP2J2	CPJ2	cytochrome P450, family 2, subfamily J, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_7817	chr1	163898023	163898149	+	8.98595	NA	Intergenic	MIRc|SINE|MIR	-505105	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103688	chr9	71874035	71874211	+	8.98595	NA	Intergenic	AluSq2|SINE|Alu	47849	NR_047671	100885775	Hs.49768	NR_047671		BANCR	LINC00586	BRAF-activated non-protein coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_78176	chr4	183152768	183152901	+	8.98595	NA	Intergenic	Intergenic	62388	NR_031640	100302270		NR_031640	miRBase:MI0006372	MIR1305	MIRN1305|hsa-mir-1305	microRNA 1305	ncRNA
19-PTNLD28-TUMOR_peak_102507	chr9	23590790	23590948	+	8.98595	NA	intron (NR_121602, intron 11 of 27)	intron (NR_121602, intron 11 of 27)	81528	NR_121602	101929563	Hs.533220	NR_121602		LOC101929563	-	uncharacterized LOC101929563	ncRNA
19-PTNLD28-TUMOR_peak_46216	chr18	68083202	68083316	+	8.98595	NA	Intergenic	Intergenic	-31432	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_59917	chr20	15653782	15654307	+	8.98595	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	476540	NM_001033087	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_72328	chr3	171332459	171332560	+	8.98595	NA	intron (NM_001130081, intron 23 of 25)	intron (NM_001130081, intron 23 of 25)	-154312	NM_001161562	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_106590	chr9	136272007	136272155	+	8.98595	NA	TTS (NM_153710)	TTS (NM_153710)	-7378	NR_024514	11093	Hs.131433	NM_139025	HPRD:04994	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif, 13	protein-coding
19-PTNLD28-TUMOR_peak_51623	chr2	25887667	25887759	+	8.98595	NA	intron (NM_183360, intron 1 of 19)	MIRb|SINE|MIR	8803	NM_001256303	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_4658	chr1	87008415	87008548	+	8.98595	NA	Intergenic	Intergenic	-4278	NR_024602	22802	Hs.567422	NM_012128	HPRD:16719	CLCA4	CaCC|CaCC2	chloride channel accessory 4	protein-coding
19-PTNLD28-TUMOR_peak_65942	chr22	46113759	46113918	+	8.98595	NA	intron (NM_013236, intron 5 of 11)	intron (NM_013236, intron 5 of 11)	-42566	NR_039919	100616253		NR_039919		MIR4762	-	microRNA 4762	ncRNA
19-PTNLD28-TUMOR_peak_14469	chr10	79504146	79504287	+	8.98595	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-106639	NM_001271522	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_38153	chr16	59244938	59245115	+	8.98595	NA	Intergenic	Intergenic	-476765	NM_001286220	2806	Hs.599470	NM_002080	HPRD:00684	GOT2	KAT4|KATIV|mitAAT	glutamic-oxaloacetic transaminase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_91271	chr7	9757858	9757982	+	8.98595	NA	Intergenic	Intergenic	84020	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91556	chr7	22309658	22309924	+	8.98595	NA	intron (NM_012294, intron 6 of 25)	LTR22A|LTR|ERVK	86742	NM_012294	9771	Hs.174768	NM_012294	HPRD:15208	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
19-PTNLD28-TUMOR_peak_4137	chr1	66110906	66110999	+	8.98595	NA	Intergenic	HERVH-int|LTR|ERV1	119580	NM_001198689	3953	Hs.23581	NM_002303	HPRD:03001	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
19-PTNLD28-TUMOR_peak_100140	chr8	113877495	113877601	+	8.98595	NA	intron (NM_198124, intron 11 of 71)	intron (NM_198124, intron 11 of 71)	221826	NR_031745	100302225		NR_031745	miRBase:MI0010487	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA
19-PTNLD28-TUMOR_peak_43844	chr17	77848316	77848411	+	8.98595	NA	Intergenic	L1MD2|LINE|L1	-35150	NM_003655	8535	Hs.405046	NM_003655	HPRD:04357	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_52769	chr2	53263496	53263648	+	8.98595	NA	Intergenic	Intergenic	-731357	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_105801	chr9	123193681	123193839	+	8.98595	NA	intron (NM_001011649, intron 25 of 36)	MIR|SINE|MIR	148688	NR_073556	55755	Hs.269560	NM_018249	HPRD:09740	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_44800	chr18	19686702	19686826	+	8.98595	NA	Intergenic	Intergenic	62165	NR_102763	100128893	Hs.514745	NR_102763	ENSG00000266010	GATA6-AS1	locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_61047	chr20	38606288	38606413	+	8.98595	NA	Intergenic	L1HS|LINE|L1	-26753	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_78355	chr4	186245597	186245765	+	8.98595	NA	intron (NM_031953, intron 9 of 18)	LTR19A|LTR|ERV1	54471	NM_018409	55805	Hs.558513	NM_018409	HPRD:10911	LRP2BP	-	LRP2 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_77997	chr4	169802982	169803187	+	8.98595	NA	intron (NM_001166110, intron 2 of 11)	intron (NM_001166110, intron 2 of 11)	49928	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_95610	chr7	136091069	136091212	+	8.98595	NA	Intergenic	Intergenic	-428936	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_14258	chr10	73741191	73741509	+	8.98595	NA	intron (NM_004273, intron 1 of 2)	intron (NM_004273, intron 1 of 2)	17230	NM_004273	9469	Hs.158304	NM_004273	HPRD:07052	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_99999	chr8	107027223	107027332	+	8.98595	NA	intron (NR_125797, intron 1 of 4)	L1MEc|LINE|L1	45454	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4466	chr1	78610866	78610981	+	8.98595	NA	Intergenic	Intergenic	-84360	NR_027310	149047	Hs.352665	NM_144700	ENSG00000237413	MGC27382	-	uncharacterized MGC27382	ncRNA
19-PTNLD28-TUMOR_peak_44379	chr18	5630660	5630787	+	8.98595	NA	Intergenic	CpG-11574	-1733	NM_001281535	23136	Hs.213394	NM_012307	HPRD:05622	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_51320	chr2	16780900	16780989	+	8.98595	NA	intron (NM_030797, intron 2 of 11)	L1HS|LINE|L1	66190	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_35388	chr15	98484980	98485137	+	8.98595	NA	Intergenic	AluSx|SINE|Alu	-18875	NM_183376	91947	Hs.6093	NM_183376	HPRD:10664	ARRDC4	-	arrestin domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_43073	chr17	65606278	65606399	+	8.98595	NA	intron (NM_181671, intron 5 of 9)	MER5A1|DNA|hAT-Charlie	-107723	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_90323	chr6	159315388	159315628	+	8.98595	NA	intron (NM_001195032, intron 1 of 2)	intron (NM_001195032, intron 1 of 2)	5889	NM_001195032	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding
19-PTNLD28-TUMOR_peak_97305	chr8	16724885	16724978	+	8.98595	NA	Intergenic	Intergenic	134743	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_99232	chr8	75086242	75086501	+	8.98595	NA	Intergenic	LTR8A|LTR|ERV1	147191	NM_020647	56704	Hs.657367	NM_020647	HPRD:07286	JPH1	JP-1|JP1	junctophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_99117	chr8	70166910	70167052	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-150556	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LOC100505718	-	uncharacterized LOC100505718	ncRNA
19-PTNLD28-TUMOR_peak_88823	chr6	95220657	95220762	+	8.98595	NA	Intergenic	Intergenic	803908	NR_015362	643432	Hs.509936	NR_015362		TSG1	-	tumor suppressor TSG1	ncRNA
19-PTNLD28-TUMOR_peak_100726	chr8	126841123	126841225	+	8.98595	NA	Intergenic	L2a|LINE|L2	122267	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_98830	chr8	55671486	55671584	+	8.98595	NA	Intergenic	Intergenic	142908	NM_006269	6101	Hs.732820	NM_006269	HPRD:04896	RP1	DCDC4A|ORP1	retinitis pigmentosa 1 (autosomal dominant)	protein-coding
19-PTNLD28-TUMOR_peak_93953	chr7	92554452	92554558	+	8.98595	NA	Intergenic	L1PA7|LINE|L1	-88564	NM_001145306	1021	Hs.119882	NM_001259	HPRD:04533	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_29667	chr14	27147946	27148160	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-81093	NM_002515	4857	Hs.31588	NM_002515	HPRD:03693	NOVA1	Nova-1	neuro-oncological ventral antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_59118	chr2	238767099	238767218	+	8.98595	NA	Intergenic	Intergenic	-1029	NM_005855	10267	Hs.471783	NM_005855	HPRD:05515	RAMP1	-	receptor (G protein-coupled) activity modifying protein 1	protein-coding
19-PTNLD28-TUMOR_peak_88278	chr6	72913863	72914044	+	8.98595	NA	intron (NM_014989, intron 6 of 33)	intron (NM_014989, intron 6 of 33)	-8561	NM_001168407	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_92996	chr7	67598145	67598315	+	8.98595	NA	Intergenic	Intergenic	112990	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_18152	chr11	39511705	39511887	+	8.98595	NA	Intergenic	Intergenic	802884	NR_047674	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_10071	chr1	217869541	217869746	+	8.98595	NA	intron (NM_138796, intron 5 of 10)	L1PA2|LINE|L1	64948	NM_138796	128153	Hs.171130	NM_138796		SPATA17	IQCH|MSRG-11|MSRG11	spermatogenesis associated 17	protein-coding
19-PTNLD28-TUMOR_peak_45736	chr18	47928476	47928595	+	8.98595	NA	Intergenic	HERVS71-int|LTR|ERV1	27143	NM_001039535	220134	Hs.134726	NM_145060	HPRD:12689	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_16784	chr11	3915366	3915518	+	8.98595	NA	intron (NM_001277962, intron 1 of 12)	intron (NM_001277962, intron 1 of 12)	38150	NR_039835	100616453		NR_039835	miRBase:MI0017319	MIR4687	-	microRNA 4687	ncRNA
19-PTNLD28-TUMOR_peak_104001	chr9	80111397	80111545	+	8.98595	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	48906	NR_121184	101927422	Hs.434324	NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74530	chr4	11545354	11545595	+	8.98595	NA	Intergenic	Intergenic	-114937	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_56370	chr2	153492338	153492430	+	8.98595	NA	intron (NM_052905, intron 21 of 25)	intron (NM_052905, intron 21 of 25)	81591	NM_017892	55660	Hs.643580	NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_38799	chr16	76839193	76839329	+	8.98595	NA	Intergenic	Intergenic	-63572	NR_039870	100616172		NR_039870	miRBase:MI0017354	MIR4719	-	microRNA 4719	ncRNA
19-PTNLD28-TUMOR_peak_77435	chr4	146330691	146330796	+	8.98595	NA	Intergenic	Intergenic	-72208	NM_005900	4086	Hs.604588	NM_005900	HPRD:03356	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
19-PTNLD28-TUMOR_peak_62956	chr21	26563594	26563701	+	8.98595	NA	Intergenic	Intergenic	240366	NR_024027	54072	Hs.234016	NM_058184	HPRD:10748	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
19-PTNLD28-TUMOR_peak_38898	chr16	79933362	79933473	+	8.98595	NA	Intergenic	AluJo|SINE|Alu	104271	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_67658	chr3	40606417	40606506	+	8.98595	NA	Intergenic	HERVH-int|LTR|ERV1	40092	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_60055	chr20	18859844	18860107	+	8.98595	NA	Intergenic	L1PB1|LINE|L1	-49136	NM_001242671	100128496	Hs.664484	NM_001242671	ENSG00000149443	C20orf78	dJ1068E13.1	chromosome 20 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_5477	chr1	110871015	110871167	+	8.98595	NA	intron (NR_036595, intron 1 of 3)	MLT1J|LTR|ERVL-MaLR	10702	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	ncRNA
19-PTNLD28-TUMOR_peak_57140	chr2	177372623	177372822	+	8.98595	NA	Intergenic	Intergenic	93058	NR_031648	100302142		NR_031648		MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
19-PTNLD28-TUMOR_peak_93884	chr7	90844499	90844592	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-49238	NM_003505	8321	Hs.94234	NM_003505	HPRD:04558	FZD1	-	frizzled class receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_77466	chr4	147271210	147271449	+	8.98595	NA	intron (NM_001029998, intron 5 of 11)	L1PA2|LINE|L1	-58406	NR_107003	102465837		NR_107003		MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
19-PTNLD28-TUMOR_peak_30042	chr14	42380353	42380445	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	303635	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_97931	chr8	28657491	28657932	+	8.98595	NA	intron (NR_026826, intron 6 of 14)	L2b|LINE|L2	89721	NM_001172562	55756	Hs.162397	NM_018250	HPRD:07706	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
19-PTNLD28-TUMOR_peak_49246	chr19	43144412	43144671	+	8.98595	NA	intron (NR_073180, intron 2 of 2)	SVA_C|Other|Other	-45459	NM_001816	1088	Hs.41	NM_001816	HPRD:07630	CEACAM8	CD66b|CD67|CGM6|NCA-95	carcinoembryonic antigen-related cell adhesion molecule 8	protein-coding
19-PTNLD28-TUMOR_peak_40207	chr17	10640572	10640872	+	8.98595	NA	intron (NR_073455, intron 3 of 4)	intron (NR_073455, intron 3 of 4)	-7076	NM_001004313	388335	Hs.462230	NM_001004313	HPRD:17371	TMEM220	-	transmembrane protein 220	protein-coding
19-PTNLD28-TUMOR_peak_46830	chr19	4927273	4927447	+	8.98595	NA	intron (NM_001048201, intron 2 of 16)	AluSz6|SINE|Alu	-5339	NR_039902	100616337		NR_039902		MIR4747	-	microRNA 4747	ncRNA
19-PTNLD28-TUMOR_peak_16898	chr11	7067936	7068050	+	8.98595	NA	exon (NM_176822, exon 5 of 12)	exon (NM_176822, exon 5 of 12)	26293	NM_176822	338323	Hs.449637	NM_176822	HPRD:11383	NLRP14	CLR11.2|GC-LRR|NALP14|NOD5|PAN8	NLR family, pyrin domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_89576	chr6	136172763	136172918	+	8.98595	NA	promoter-TSS (NM_018945)	promoter-TSS (NM_018945)	6	NM_018945	27115	Hs.744230	NM_018945	HPRD:06870	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
19-PTNLD28-TUMOR_peak_16222	chr10	129239656	129239881	+	8.98595	NA	intron (NM_001380, intron 49 of 51)	intron (NM_001380, intron 49 of 51)	-107845	NM_001030013	594857	Hs.643423	NM_001030013	ENSG00000214285	NPS	-	neuropeptide S	protein-coding
19-PTNLD28-TUMOR_peak_24451	chr12	53537261	53537380	+	8.98595	NA	Intergenic	MER4A|LTR|ERV1	20957	NM_001244706	51380	Hs.279815	NM_015989	HPRD:16763	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_3913	chr1	61106157	61106298	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	185029	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_89545	chr6	134785879	134786114	+	8.98595	NA	non-coding (NR_038216, exon 2 of 3)	non-coding (NR_038216, exon 2 of 3)	26468	NR_038218	154092	Hs.223718	NR_038216		LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
19-PTNLD28-TUMOR_peak_85230	chr6	8983284	8983623	+	8.98595	NA	Intergenic	Intergenic	331011	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_70301	chr3	124180702	124180885	+	8.98595	NA	exon (NM_003947, exon 24 of 34)	exon (NM_003947, exon 24 of 34)	87614	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_81484	chr5	108763485	108763589	+	8.98595	NA	Intergenic	Intergenic	-17862	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_56163	chr2	146617803	146617911	+	8.98595	NA	Intergenic	Intergenic	-726768	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_59899	chr20	14860174	14860339	+	8.98595	NA	intron (NM_080676, intron 5 of 16)	intron (NM_080676, intron 5 of 16)	49908	NR_110318	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	BA318C17.1|NCRNA00186	MACROD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28562	chr13	78476581	78476679	+	8.98595	NA	intron (NM_001122659, intron 3 of 6)	LTR10A|LTR|ERV1	16336	NM_003991	1910	Hs.82002	NM_000115	HPRD:08834	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
19-PTNLD28-TUMOR_peak_33051	chr15	35849813	35849969	+	8.98595	NA	intron (NR_038251, intron 1 of 2)	intron (NR_038251, intron 1 of 2)	-11487	NM_001141972	89978	Hs.107196	NM_080650	HPRD:14443	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
19-PTNLD28-TUMOR_peak_81038	chr5	86309010	86309124	+	8.98595	NA	Intergenic	Intergenic	101704	NR_036243	100422887		NR_036243	miRBase:MI0015889	MIR4280	-	microRNA 4280	ncRNA
19-PTNLD28-TUMOR_peak_72444	chr3	175174464	175174555	+	8.98595	NA	intron (NM_207015, intron 6 of 13)	L1MC4|LINE|L1	41523	NR_106753	102465247		NR_106753		MIR548AY	hsa-mir-548ay	microRNA 548ay	ncRNA
19-PTNLD28-TUMOR_peak_99697	chr8	101118219	101118404	+	8.98595	NA	promoter-TSS (NM_001286693)	promoter-TSS (NM_001286693)	33	NM_001286692	26166	Hs.120021	NM_015668	HPRD:13155	RGS22	CT145|PRTD-NY2	regulator of G-protein signaling 22	protein-coding
19-PTNLD28-TUMOR_peak_108104	chrX	45647842	45648000	+	8.98595	NA	Intergenic	Intergenic	-41391	NR_029636	407007		NR_029636	miRBase:MI0000299	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
19-PTNLD28-TUMOR_peak_21622	chr11	120024088	120024196	+	8.98595	NA	Intergenic	AluJr|SINE|Alu	-15279	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_29729	chr14	31825366	31825482	+	8.98595	NA	intron (NM_015473, intron 16 of 35)	intron (NM_015473, intron 16 of 35)	64364	NM_015473	25938	Hs.744979	NM_015473	ENSG00000129493	HEATR5A	C14orf125	HEAT repeat containing 5A	protein-coding
19-PTNLD28-TUMOR_peak_11271	chr1	240406228	240406385	+	8.98595	NA	intron (NM_020066, intron 6 of 17)	intron (NM_020066, intron 6 of 17)	151121	NM_020066	56776	Hs.24889	NM_020066	HPRD:10449	FMN2	-	formin 2	protein-coding
19-PTNLD28-TUMOR_peak_28686	chr13	94255379	94255553	+	8.98595	NA	intron (NM_005708, intron 2 of 8)	AluJr|SINE|Alu	255260	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_67682	chr3	41143599	41143776	+	8.98595	NA	Intergenic	Intergenic	-97255	NM_001904	1499	Hs.476018	NM_001904	HPRD:00286	CTNNB1	CTNNB|MRD19|armadillo	catenin (cadherin-associated protein), beta 1, 88kDa	protein-coding
19-PTNLD28-TUMOR_peak_53723	chr2	84701370	84701507	+	8.98595	NA	Intergenic	HERVK14-int|LTR|ERVK	-14852	NM_003849	8802	Hs.270428	NM_003849	HPRD:18128	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_79307	chr5	31707591	31707703	+	8.98595	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-91384	NM_178140	23037	Hs.481819	NM_015022	HPRD:10142	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28971	chr13	107248745	107249105	+	8.98595	NA	Intergenic	Intergenic	-21233	NR_051977	283483	Hs.651365	NR_051977	ENSG00000272274	LINC00551	-	long intergenic non-protein coding RNA 551	ncRNA
19-PTNLD28-TUMOR_peak_27529	chr13	25688450	25688565	+	8.98595	NA	Intergenic	Intergenic	18231	NM_030979	5042	Hs.458280	NM_030979		PABPC3	PABP3|PABPL3|tPABP	poly(A) binding protein, cytoplasmic 3	protein-coding
19-PTNLD28-TUMOR_peak_12919	chr10	35211251	35211369	+	8.98595	NA	Intergenic	L2a|LINE|L2	106614	NR_108043	100505601	Hs.549790	NR_108043		PARD3-AS1	-	PARD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16873	chr11	6464768	6464877	+	8.98595	NA	Intergenic	Intergenic	-2568	NM_000613	3263	Hs.426485	NM_000613	HPRD:00793	HPX	HX	hemopexin	protein-coding
19-PTNLD28-TUMOR_peak_74669	chr4	17638532	17638641	+	8.98595	NA	intron (NM_015688, intron 14 of 17)	intron (NM_015688, intron 14 of 17)	22313	NM_025205	80306	Hs.731966	NM_025205		MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
19-PTNLD28-TUMOR_peak_25752	chr12	98749264	98749385	+	8.98595	NA	Intergenic	Intergenic	101599	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40881	chr17	28286422	28286563	+	8.98595	NA	intron (NR_026738, intron 3 of 15)	L1M1|LINE|L1	17869	NR_026738	374786	Hs.662411	NM_198529	HPRD:13528	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_75967	chr4	82541740	82541939	+	8.98595	NA	Intergenic	Intergenic	-148757	NM_001300736	153020	Hs.591696	NM_152545	HPRD:17955	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_11114	chr1	235982095	235982194	+	8.98595	NA	intron (NM_001301365, intron 3 of 52)	intron (NM_001301365, intron 3 of 52)	34216	NR_031718	100302139		NR_031718	miRBase:MI0007258	MIR1537	MIRN1537|hsa-mir-1537	microRNA 1537	ncRNA
19-PTNLD28-TUMOR_peak_61434	chr20	45023461	45023629	+	8.98595	NA	intron (NM_133171, intron 2 of 21)	intron (NM_133171, intron 2 of 21)	11726	NM_182764	63916	Hs.210469	NM_022086	HPRD:12103	ELMO2	CED-12|CED12|ELMO-2	engulfment and cell motility 2	protein-coding
19-PTNLD28-TUMOR_peak_52745	chr2	51056275	51056379	+	8.98595	NA	intron (NM_001135659, intron 5 of 23)	SVA_D|Other|Other	203347	NM_004801	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_69725	chr3	111414550	111414652	+	8.98595	NA	intron (NM_001185106, intron 1 of 4)	MER44D|DNA|TcMar-Tigger	-18321	NR_046733	100874115	Hs.626740	NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78925	chr5	10816112	10816384	+	8.98595	NA	Intergenic	L1PA11|LINE|L1	-54861	NM_001291963	1611	Hs.75189	NM_004394	HPRD:02977	DAP	-	death-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_65146	chr22	31709465	31709765	+	8.98595	NA	Intergenic	Intergenic	-21095	NM_052880	113791	Hs.26670	NM_052880	HPRD:17518	PIK3IP1	HGFL|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_989	chr1	15664292	15664406	+	8.98595	NA	intron (NM_052929, intron 14 of 30)	MIRc|SINE|MIR	-72042	NM_024329	79180	Hs.465374	NM_024329	HPRD:13266	EFHD2	SWS1	EF-hand domain family, member D2	protein-coding
19-PTNLD28-TUMOR_peak_28944	chr13	106263884	106264020	+	8.98595	NA	Intergenic	Intergenic	-95227	NR_120418	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_49241	chr19	42944612	42944706	+	8.98595	NA	intron (NM_198477, intron 1 of 3)	intron (NM_198477, intron 1 of 3)	2477	NM_198477	284340	Hs.445586	NM_198477		CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	chemokine (C-X-C motif) ligand 17	protein-coding
19-PTNLD28-TUMOR_peak_102156	chr9	8579744	8579951	+	8.98595	NA	intron (NM_001040712, intron 3 of 29)	L2c|LINE|L2	154099	NM_130393	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_43246	chr17	70982411	70982541	+	8.98595	NA	intron (NM_139177, intron 4 of 9)	intron (NM_139177, intron 4 of 9)	106377	NM_139177	201266	Hs.221127	NM_139177	HPRD:15383	SLC39A11	C17orf26|ZIP11	solute carrier family 39, member 11	protein-coding
19-PTNLD28-TUMOR_peak_28427	chr13	70823529	70823728	+	8.98595	NA	Intergenic	MER70B|LTR|ERVL	-141003	NM_001286725	57626	Hs.508201	NM_020866	HPRD:05623	KLHL1	MRP2	kelch-like family member 1	protein-coding
19-PTNLD28-TUMOR_peak_13716	chr10	59724337	59724442	+	8.98595	NA	Intergenic	Intergenic	303305	NM_152230	253430	Hs.30280	NM_152230	HPRD:17153	IPMK	-	inositol polyphosphate multikinase	protein-coding
19-PTNLD28-TUMOR_peak_15683	chr10	114143123	114143398	+	8.98595	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	7304	NM_016234	51703	Hs.11638	NM_016234	HPRD:16139	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long-chain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_54451	chr2	100036627	100036726	+	8.98595	NA	intron (NM_016316, intron 11 of 22)	MER74B|LTR|ERVL	69804	NM_016316	51455	Hs.443077	NM_016316	HPRD:16202	REV1	REV1L	REV1, polymerase (DNA directed)	protein-coding
19-PTNLD28-TUMOR_peak_16086	chr10	125395421	125395513	+	8.98595	NA	Intergenic	Intergenic	-30404	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
19-PTNLD28-TUMOR_peak_31510	chr14	81581026	81581118	+	8.98595	NA	intron (NM_000369, intron 8 of 9)	L1PA3|LINE|L1	88106	NR_003021	677845	Hs.693251	NR_003021		SNORA79	ACA65	small nucleolar RNA, H/ACA box 79	snoRNA
19-PTNLD28-TUMOR_peak_97064	chr8	8594542	8594651	+	8.98595	NA	Intergenic	Intergenic	34930	NM_194284	137075	Hs.183617	NM_194284	HPRD:13069	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
19-PTNLD28-TUMOR_peak_34142	chr15	68143692	68143843	+	8.98595	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-11384	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_55320	chr2	120865722	120865923	+	8.98595	NA	intron (NM_020909, intron 16 of 24)	intron (NM_020909, intron 16 of 24)	95037	NM_001184938	57669	Hs.369232	NM_020909	HPRD:13273	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
19-PTNLD28-TUMOR_peak_54448	chr2	99873282	99873448	+	8.98595	NA	Intergenic	MIRb|SINE|MIR	-1795	NM_175735	254773	Hs.436468	NM_175735	HPRD:14331	LYG2	LYGH	lysozyme G-like 2	protein-coding
19-PTNLD28-TUMOR_peak_58337	chr2	218096014	218096363	+	8.98595	NA	Intergenic	L1MC4|LINE|L1	-371406	NM_003284	7141	Hs.3017	NM_003284	HPRD:01830	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
19-PTNLD28-TUMOR_peak_61987	chr20	51463605	51463813	+	8.98595	NA	Intergenic	Intergenic	-125237	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_57320	chr2	183210264	183210387	+	8.98595	NA	intron (NM_001003683, intron 2 of 14)	L2a|LINE|L2	81450	NM_001258313	5136	Hs.191046	NM_005019	HPRD:01387	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_4080	chr1	64689455	64689647	+	8.98595	NA	intron (NM_152489, intron 6 of 8)	L2c|LINE|L2	20061	NM_152489	148581	Hs.388746	NM_152489	HPRD:14599	UBE2U	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding
19-PTNLD28-TUMOR_peak_89538	chr6	134589237	134589428	+	8.98595	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	49864	NM_001143676	6446	Hs.510078	NM_005627	HPRD:04264	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_64611	chr22	22511265	22511373	+	8.98595	NA	Intergenic	Intergenic	-87881	NM_007128	7441	Hs.247979	NM_007128	HPRD:05505	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
19-PTNLD28-TUMOR_peak_88206	chr6	67341217	67341329	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	843501	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	solute carrier family 25, member 51 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_28003	chr13	42586260	42586385	+	8.98595	NA	Intergenic	Intergenic	-27850	NM_001204504	160851	Hs.630380	NM_152910	HPRD:07237	DGKH	DGKeta	diacylglycerol kinase, eta	protein-coding
19-PTNLD28-TUMOR_peak_85889	chr6	21755268	21755430	+	8.98595	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	88674	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77361	chr4	143199915	143200106	+	8.98595	NA	intron (NM_001101669, intron 9 of 25)	L1ME1|LINE|L1	567594	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_81506	chr5	110365903	110366061	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	-39796	NR_045089	85480	Hs.389874	NM_033035	HPRD:06108	TSLP	-	thymic stromal lymphopoietin	protein-coding
19-PTNLD28-TUMOR_peak_30678	chr14	62061248	62061379	+	8.98595	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-23942	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_89449	chr6	130499970	130500073	+	8.98595	NA	intron (NM_001017373, intron 7 of 11)	intron (NM_001017373, intron 7 of 11)	37009	NM_001277185	154075	Hs.440508	NM_152552	HPRD:11530	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_25406	chr12	78797043	78797175	+	8.98595	NA	Intergenic	Intergenic	-460664	NM_001135805	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
19-PTNLD28-TUMOR_peak_16791	chr11	4021298	4021391	+	8.98595	NA	intron (NM_001277962, intron 2 of 12)	L1PA3|LINE|L1	-94580	NM_001033	6240	Hs.445705	NM_001033	HPRD:01588	RRM1	R1|RIR1|RR1	ribonucleotide reductase M1	protein-coding
19-PTNLD28-TUMOR_peak_108373	chrX	53019338	53019438	+	8.98595	NA	intron (NM_001242492, intron 1 of 4)	intron (NM_001242492, intron 1 of 4)	5263	NM_001242490	29057	Hs.6451	NM_014138	HPRD:06683	FAM156A	PRO0659|TMEM29	family with sequence similarity 156, member A	protein-coding
19-PTNLD28-TUMOR_peak_27099	chr12	127548009	127548150	+	8.98595	NA	Intergenic	Intergenic	-3137	NR_104646	101927592	Hs.385663	NR_104646	ENSG00000249345	LOC101927592	-	uncharacterized LOC101927592	ncRNA
19-PTNLD28-TUMOR_peak_28316	chr13	52828883	52829000	+	8.98595	NA	Intergenic	L1P1|LINE|L1	-60339	NR_002816	100887750	Hs.553878	NR_002816	ENSG00000243406	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_14866	chr10	92483414	92483765	+	8.98595	NA	Intergenic	MER104|DNA|TcMar-Tc2	134082	NM_000872	3363	Hs.73739	NM_000872	HPRD:01639	HTR7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled	protein-coding
19-PTNLD28-TUMOR_peak_107472	chrX	8012966	8013330	+	8.98595	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-81858	NR_030380	723779		NR_030380	miRBase:MI0003666	MIR651	MIRN651|hsa-mir-651	microRNA 651	ncRNA
19-PTNLD28-TUMOR_peak_76995	chr4	127989176	127989291	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-564854	NM_015693	27152	Hs.391481	NM_015693		INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
19-PTNLD28-TUMOR_peak_98094	chr8	32589343	32589447	+	8.98595	NA	intron (NM_001159995, intron 4 of 10)	intron (NM_001159995, intron 4 of 10)	10044	NM_001159996	3084	Hs.453951	NM_004495	HPRD:00802	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
19-PTNLD28-TUMOR_peak_103993	chr9	79765828	79765934	+	8.98595	NA	Intergenic	Intergenic	-26480	NM_001018038	23230	Hs.459790	NM_015186	HPRD:05814	VPS13A	CHAC|CHOREIN	vacuolar protein sorting 13 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55902	chr2	135189820	135189969	+	8.98595	NA	intron (NM_002410, intron 14 of 15)	intron (NM_002410, intron 14 of 15)	178064	NM_002410	4249	Hs.4988	NM_002410	HPRD:03467	MGAT5	GNT-V|GNT-VA	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_99476	chr8	91437516	91437689	+	8.98595	NA	Intergenic	AluJb|SINE|Alu	180689	NR_104062	101937451	Hs.583685	NR_104062		LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
19-PTNLD28-TUMOR_peak_99387	chr8	86167428	86167539	+	8.98595	NA	intron (NM_198584, intron 2 of 6)	AluJb|SINE|Alu	9767	NM_198584	377677	Hs.127189	NM_198584	HPRD:12992	CA13	CAXIII	carbonic anhydrase XIII	protein-coding
19-PTNLD28-TUMOR_peak_67343	chr3	30481897	30481999	+	8.98595	NA	Intergenic	Intergenic	-166046	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_107450	chrX	6991459	6991615	+	8.98595	NA	intron (NM_001178135, intron 3 of 3)	intron (NM_001178135, intron 3 of 3)	-74364	NR_039924	100616467		NR_039924	miRBase:MI0017408	MIR4767	-	microRNA 4767	ncRNA
19-PTNLD28-TUMOR_peak_63029	chr21	29525091	29525277	+	8.98595	NA	Intergenic	Intergenic	139502	NR_027246	246705	Hs.505079	NM_145180	HPRD:10778	LINC00314	C21orf94|NCRNA00314	long intergenic non-protein coding RNA 314	ncRNA
19-PTNLD28-TUMOR_peak_60725	chr20	34156712	34156849	+	8.98595	NA	intron (NR_119376, intron 35 of 43)	L2a|LINE|L2	27002	NM_015966	51614	Hs.472558	NM_015966	HPRD:15306	ERGIC3	C20orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
19-PTNLD28-TUMOR_peak_80792	chr5	76020816	76020953	+	8.98595	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	9016	NM_001992	2149	Hs.482562	NM_001992	HPRD:01763	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II (thrombin) receptor	protein-coding
19-PTNLD28-TUMOR_peak_51504	chr2	21437474	21437564	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-170574	NM_000384	338	Hs.120759	NM_000384	HPRD:00133	APOB	FLDB|LDLCQ4	apolipoprotein B	protein-coding
19-PTNLD28-TUMOR_peak_72833	chr3	185008147	185008336	+	8.98595	NA	intron (NM_001242317, intron 2 of 12)	intron (NM_001242317, intron 2 of 12)	7512	NR_038322	9175	Hs.591306	NM_004721	HPRD:05372	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_87246	chr6	37933876	37934009	+	8.98595	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	146635	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_8886	chr1	185827614	185827882	+	8.98595	NA	intron (NM_031935, intron 2 of 106)	AluJb|SINE|Alu	124065	NM_031935	83872	Hs.58877	NM_031935	HPRD:06509	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
19-PTNLD28-TUMOR_peak_62010	chr20	51717297	51717422	+	8.98595	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	-84463	NM_001193421	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_107887	chrX	30925087	30925219	+	8.98595	NA	Intergenic	MER77B|LTR|ERVL	-17642	NM_152787	257397	Hs.188256	NM_152787	HPRD:06738	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_75088	chr4	41646302	41646471	+	8.98595	NA	intron (NM_001112717, intron 9 of 25)	CpG	31597	NM_001112720	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_102749	chr9	33946924	33947072	+	8.98595	NA	intron (NM_001282529, intron 9 of 24)	MER68|LTR|ERVL	5854	NR_003685	100113379		NR_003685		SNORD121A	-	small nucleolar RNA, C/D box 121A	snoRNA
19-PTNLD28-TUMOR_peak_75891	chr4	79631829	79631981	+	8.98595	NA	Intergenic	L1ME3|LINE|L1	64757	NR_038305	100505702	Hs.235795	NR_038303		LINC01094	-	long intergenic non-protein coding RNA 1094	ncRNA
19-PTNLD28-TUMOR_peak_98945	chr8	60978196	60978298	+	8.98595	NA	Intergenic	Intergenic	215707	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
19-PTNLD28-TUMOR_peak_76198	chr4	88906867	88907009	+	8.98595	NA	Intergenic	LTR41B|LTR|ERVL	10136	NM_001040058	6696	Hs.313	NM_000582	HPRD:01325	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_40740	chr17	25867461	25867650	+	8.98595	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	68519	NM_014238	8844	Hs.133534	NM_014238		KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
19-PTNLD28-TUMOR_peak_30085	chr14	45560940	45561179	+	8.98595	NA	intron (NM_017922, intron 1 of 13)	intron (NM_017922, intron 1 of 13)	7757	NM_017922	55015	Hs.274337	NM_017922	HPRD:17913	PRPF39	-	pre-mRNA processing factor 39	protein-coding
19-PTNLD28-TUMOR_peak_81958	chr5	126649633	126649812	+	8.98595	NA	intron (NM_032446, intron 2 of 25)	intron (NM_032446, intron 2 of 25)	23266	NM_032446	84466	Hs.438709	NM_032446	HPRD:14384	MEGF10	EMARDD	multiple EGF-like-domains 10	protein-coding
19-PTNLD28-TUMOR_peak_92467	chr7	47835278	47835374	+	8.98595	NA	intron (NM_025031, intron 1 of 2)	MIRc|SINE|MIR	437	NM_025031	80099	Hs.287647	NM_025031	HPRD:08635	C7orf69	-	chromosome 7 open reading frame 69	protein-coding
19-PTNLD28-TUMOR_peak_97982	chr8	29580592	29580784	+	8.98595	NA	intron (NR_026765, intron 3 of 3)	intron (NR_026765, intron 3 of 3)	24937	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_1616	chr1	26021657	26021846	+	8.98595	NA	intron (NM_001289010, intron 2 of 11)	intron (NM_001289010, intron 2 of 11)	77792	NM_020379	57134	Hs.197043	NM_020379		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase, alpha, class 1C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_23097	chr12	12663142	12663395	+	8.98595	NA	intron (NM_030640, intron 3 of 6)	intron (NM_030640, intron 3 of 6)	52180	NM_030640	80824	Hs.536535	NM_030640		DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
19-PTNLD28-TUMOR_peak_33925	chr15	63569278	63569499	+	8.98595	NA	promoter-TSS (NM_001145646)	promoter-TSS (NM_001145646)	-361	NM_001145646	83464	Hs.511703	NM_031301	HPRD:06361	APH1B	APH-1B|PRO1328|PSFL|TAAV688	APH1B gamma secretase subunit	protein-coding
19-PTNLD28-TUMOR_peak_15634	chr10	112612174	112612307	+	8.98595	NA	Intergenic	Intergenic	18422	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28276	chr13	51999656	51999854	+	8.98595	NA	intron (NM_012141, intron 4 of 17)	intron (NM_012141, intron 4 of 17)	27520	NM_012141	26512	Hs.439440	NM_012141	HPRD:05063	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_35059	chr15	86746787	86747069	+	8.98595	NA	intron (NM_152336, intron 4 of 23)	intron (NM_152336, intron 4 of 23)	61686	NM_152336	123624	Hs.679833	NM_152336	HPRD:07115	AGBL1	CCP4|FECD8	ATP/GTP binding protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_23846	chr12	43073293	43073398	+	8.98595	NA	Intergenic	Intergenic	-33045	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_60034	chr20	18341397	18341523	+	8.98595	NA	Intergenic	Intergenic	-18233	NR_034167	440757	Hs.120399	NM_001004344	HPRD:14632	LINC00851	DZANK1-AS1	long intergenic non-protein coding RNA 851	ncRNA
19-PTNLD28-TUMOR_peak_109440	chrX	129289677	129289848	+	8.98595	NA	intron (NM_145812, intron 1 of 15)	intron (NM_145812, intron 1 of 15)	10099	NM_004208	9131	Hs.424932	NM_004208	HPRD:02161	AIFM1	AIF|CMT2D|CMTX4|COWCK|COXPD6|NADMR|NAMSD|PDCD8	apoptosis-inducing factor, mitochondrion-associated, 1	protein-coding
19-PTNLD28-TUMOR_peak_81554	chr5	111811897	111811994	+	8.98595	NA	Intergenic	Intergenic	56665	NR_027706	54508	Hs.591264	NR_027706		EPB41L4A-AS2	-	EPB41L4A antisense RNA 2 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_76078	chr4	85495014	85495150	+	8.98595	NA	Intergenic	Intergenic	-8975	NM_001263	1040	Hs.654899	NM_001263	HPRD:11944	CDS1	CDS	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1	protein-coding
19-PTNLD28-TUMOR_peak_53665	chr2	80028309	80028424	+	8.98595	NA	intron (NM_001282597, intron 3 of 18)	LTR16E2|LTR|ERVL	65343	NR_107047	102465877		NR_107047		MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
19-PTNLD28-TUMOR_peak_31322	chr14	75709319	75709600	+	8.98595	NA	Intergenic	Intergenic	-36022	NM_005252	2353	Hs.25647	NM_005252	HPRD:01275	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_79792	chr5	49689891	49690017	+	8.98595	NA	Intergenic	Intergenic	47280	NM_198449	133418	Hs.561411	NM_198449	HPRD:13271	EMB	GP70	embigin	protein-coding
19-PTNLD28-TUMOR_peak_69238	chr3	85130797	85130971	+	8.98595	NA	intron (NM_001167674, intron 1 of 9)	intron (NM_001167674, intron 1 of 9)	122751	NM_001167674	253559	Hs.164578	NM_153184	HPRD:11046	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2	cell adhesion molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_103656	chr9	71161607	71161980	+	8.98595	NA	promoter-TSS (NR_109769)	promoter-TSS (NR_109769)	-275	NR_109769	101927015	Hs.406454	NR_109769	ENSG00000234506	LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
19-PTNLD28-TUMOR_peak_45780	chr18	48856646	48856814	+	8.98595	NA	Intergenic	Intergenic	-61682	NR_040075	100287225	Hs.448920	NR_040074	ENSG00000227115	LOC100287225	-	uncharacterized LOC100287225	ncRNA
19-PTNLD28-TUMOR_peak_31887	chr14	95991118	95991245	+	8.98595	NA	Intergenic	Intergenic	8785	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
19-PTNLD28-TUMOR_peak_25473	chr12	82576465	82576649	+	8.98595	NA	Intergenic	L2c|LINE|L2	175642	NM_014167	29080	Hs.582627	NM_014167	HPRD:13696	CCDC59	BR22|TAP26	coiled-coil domain containing 59	protein-coding
19-PTNLD28-TUMOR_peak_10123	chr1	220091267	220091359	+	8.98595	NA	intron (NM_018713, intron 3 of 3)	AluSx|SINE|Alu	10680	NM_018713	55532	Hs.284450	NM_018713		SLC30A10	HMDPC|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30, member 10	protein-coding
19-PTNLD28-TUMOR_peak_103092	chr9	39149790	39149948	+	8.98595	NA	exon (NM_033655, exon 10 of 24)	exon (NM_033655, exon 10 of 24)	138431	NM_033655	79937	Hs.128474	NM_033655	HPRD:10842	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_61675	chr20	48018663	48018842	+	8.98595	NA	intron (NM_004975, intron 1 of 1)	LTR10A|LTR|ERV1	80429	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	potassium voltage-gated channel, Shab-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_27626	chr13	30002498	30002691	+	8.98595	NA	promoter-TSS (NM_015233)	promoter-TSS (NM_015233)	-183	NM_015233	23281	Hs.22287	NM_015233		MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated tumor suppressor candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_77134	chr4	138957043	138957187	+	8.98595	NA	intron (NR_037866, intron 8 of 10)	intron (NR_037866, intron 8 of 10)	-53053	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41683	chr17	42175197	42175564	+	8.98595	NA	intron (NM_001015053, intron 3 of 26)	intron (NM_001015053, intron 3 of 26)	25634	NM_001015053	10014	Hs.438782	NM_005474	HPRD:09246	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
19-PTNLD28-TUMOR_peak_75407	chr4	56915104	56915404	+	8.98595	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	100280	NM_025009	9662	Hs.518767	NM_014645	HPRD:09954	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_29926	chr14	36139095	36139287	+	8.98595	NA	intron (NM_194301, intron 25 of 39)	L2c|LINE|L2	135943	NM_032594	84684	Hs.62813	NM_032594	HPRD:17152	INSM2	IA-6|IA6|mlt1	insulinoma-associated 2	protein-coding
19-PTNLD28-TUMOR_peak_77943	chr4	166411058	166411288	+	8.98595	NA	intron (NM_001873, intron 6 of 8)	L4|LINE|RTE	103779	NR_030304	693163		NR_030304		MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
19-PTNLD28-TUMOR_peak_89038	chr6	109309615	109309782	+	8.98595	NA	intron (NM_001199934, intron 9 of 9)	intron (NM_001199934, intron 9 of 9)	20493	NM_001199934	27244	Hs.591336	NM_014454	HPRD:07310	SESN1	PA26|SEST1	sestrin 1	protein-coding
19-PTNLD28-TUMOR_peak_27726	chr13	31542989	31543171	+	8.98595	NA	exon (NM_152325, exon 6 of 7)	exon (NM_152325, exon 6 of 7)	36246	NM_152325	122046	Hs.124463	NM_152325	HPRD:17551	TEX26	C13orf26	testis expressed 26	protein-coding
19-PTNLD28-TUMOR_peak_69702	chr3	111002151	111002260	+	8.98595	NA	Intergenic	MIR|SINE|MIR	211190	NM_001243288	25945	Hs.293917	NM_015480		PVRL3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRR3	poliovirus receptor-related 3	protein-coding
19-PTNLD28-TUMOR_peak_38691	chr16	73805713	73805846	+	8.98595	NA	Intergenic	Intergenic	385075	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	ncRNA
19-PTNLD28-TUMOR_peak_69892	chr3	113502380	113502522	+	8.98595	NA	intron (NM_001690, intron 3 of 14)	MER119|DNA|hAT-Charlie	36585	NM_001690	523	Hs.477155	NM_001690	HPRD:06120	ATP6V1A	ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1	ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A	protein-coding
19-PTNLD28-TUMOR_peak_58711	chr2	228361049	228361205	+	8.98595	NA	intron (NM_004504, intron 2 of 12)	AluYc|SINE|Alu	24239	NM_001135189	3267	Hs.352962	NM_004504	HPRD:02918	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_23708	chr12	33137093	33137259	+	8.98595	NA	Intergenic	LTR9|LTR|ERV1	-87396	NM_001005242	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_81434	chr5	106553433	106553620	+	8.98595	NA	Intergenic	Intergenic	-206811	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_85220	chr6	8579595	8579944	+	8.98595	NA	intron (NR_038980, intron 3 of 4)	intron (NR_038980, intron 3 of 4)	-72673	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_55832	chr2	133350929	133351030	+	8.98595	NA	intron (NM_001508, intron 1 of 1)	MER77B|LTR|ERVL	77502	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_44420	chr18	7221560	7221656	+	8.98595	NA	Intergenic	L1MA6|LINE|L1	-9529	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
19-PTNLD28-TUMOR_peak_56229	chr2	149792448	149792550	+	8.98595	NA	intron (NM_004522, intron 3 of 25)	intron (NM_004522, intron 3 of 25)	-11845	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
19-PTNLD28-TUMOR_peak_58196	chr2	213092649	213092747	+	8.98595	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	198386	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
19-PTNLD28-TUMOR_peak_67761	chr3	43270988	43271079	+	8.98595	NA	Intergenic	Intergenic	-56971	NM_017719	54861	Hs.476052	NM_017719	HPRD:18082	SNRK	HSNFRK	SNF related kinase	protein-coding
19-PTNLD28-TUMOR_peak_75845	chr4	78698416	78698602	+	8.98595	NA	intron (NM_144571, intron 1 of 11)	Tigger3c|DNA|TcMar-Tigger	42035	NM_001286790	246175	Hs.592519	NM_144571	HPRD:10841	CNOT6L	CCR4b	CCR4-NOT transcription complex, subunit 6-like	protein-coding
19-PTNLD28-TUMOR_peak_55422	chr2	121898487	121898582	+	8.98595	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	144244	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_90512	chr6	167239879	167239973	+	8.98595	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	35845	NM_001006932	6196	Hs.655277	NM_021135	HPRD:03403	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_93663	chr7	80642463	80642638	+	8.98595	NA	Intergenic	L1MEg1|LINE|L1	-93883	NM_006379	10512	Hs.269109	NM_006379	HPRD:04034	SEMA3C	SEMAE|SemE	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
19-PTNLD28-TUMOR_peak_51508	chr2	21899686	21899967	+	8.98595	NA	Intergenic	ERVL-E-int|LTR|ERVL	33698	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LOC645949	-	uncharacterized LOC645949	ncRNA
19-PTNLD28-TUMOR_peak_67007	chr3	17686716	17686822	+	8.98595	NA	intron (NM_014744, intron 1 of 21)	intron (NM_014744, intron 1 of 21)	54743	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_79428	chr5	34486423	34486521	+	8.98595	NA	Intergenic	Intergenic	-169961	NM_015577	26064	Hs.431400	NM_015577	HPRD:09416	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
19-PTNLD28-TUMOR_peak_11021	chr1	234811935	234812177	+	8.98595	NA	Intergenic	L1ME3A|LINE|L1	46999	NR_033927	100302691	Hs.209162	NR_033927	ENSG00000224939	LINC00184	HANC|NCRNA00184	long intergenic non-protein coding RNA 184	ncRNA
19-PTNLD28-TUMOR_peak_58145	chr2	210583933	210584081	+	8.98595	NA	intron (NM_002374, intron 12 of 14)	intron (NM_002374, intron 12 of 14)	-52710	NM_182587	285175	Hs.396201	NM_032504	HPRD:12809	UNC80	C2orf21|UNC-80	unc-80 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_102379	chr9	19397891	19398224	+	8.98595	NA	Intergenic	Intergenic	-10868	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_109109	chrX	106991191	106991300	+	8.98595	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	27772	NM_198057	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_95016	chr7	124307531	124307686	+	8.98595	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	98471	NM_005302	2861	Hs.406094	NM_005302		GPR37	EDNRBL|PAELR|hET(B)R-LP	G protein-coupled receptor 37 (endothelin receptor type B-like)	protein-coding
19-PTNLD28-TUMOR_peak_63545	chr21	40320559	40320657	+	8.98595	NA	Intergenic	MIR|SINE|MIR	-10255	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
19-PTNLD28-TUMOR_peak_56090	chr2	141722077	141722181	+	8.98595	NA	intron (NM_018557, intron 18 of 90)	LTR13|LTR|ERVK	1167141	NM_018557	53353	Hs.656461	NM_018557	HPRD:16383	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_32946	chr15	33023053	33023163	+	8.98595	NA	exon (NM_013372, exon 2 of 2)	exon (NM_013372, exon 2 of 2)	-12042	NR_109767	100131315	Hs.610545	NR_109767		LOC100131315	-	uncharacterized LOC100131315	ncRNA
19-PTNLD28-TUMOR_peak_38615	chr16	71571722	71571827	+	8.98595	NA	3' UTR (NM_005769, exon 2 of 2)	3' UTR (NM_005769, exon 2 of 2)	11620	NM_001166395	10164	Hs.251383	NM_005769	HPRD:07477	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_30742	chr14	64453995	64454122	+	8.98595	NA	intron (NM_182914, intron 19 of 115)	intron (NM_182914, intron 19 of 115)	134375	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_37510	chr16	33843588	33843704	+	8.98595	NA	Intergenic	Intergenic	118857	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
19-PTNLD28-TUMOR_peak_54862	chr2	110907287	110907436	+	8.98595	NA	intron (NM_207181, intron 12 of 19)	intron (NM_207181, intron 12 of 19)	-33218	NM_005434	7851	Hs.185055	NM_005434	HPRD:15997	MALL	BENE	mal, T-cell differentiation protein-like	protein-coding
19-PTNLD28-TUMOR_peak_83655	chr5	160834060	160834207	+	8.98595	NA	intron (NM_000813, intron 6 of 9)	intron (NM_000813, intron 6 of 9)	140997	NM_021911	2561	Hs.303527	NM_000813	HPRD:02578	GABRB2	-	gamma-aminobutyric acid (GABA) A receptor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_99192	chr8	73793287	73793399	+	8.98595	NA	intron (NM_004770, intron 2 of 2)	L1HS|LINE|L1	-127754	NM_017489	7013	Hs.442707	NM_003218	HPRD:02975	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor (NIMA-interacting) 1	protein-coding
19-PTNLD28-TUMOR_peak_68948	chr3	70520741	70520863	+	8.98595	NA	Intergenic	Intergenic	471907	NR_110000	101927152	Hs.382046	NR_110000	ENSG00000240405	LINC01212	-	long intergenic non-protein coding RNA 1212	ncRNA
19-PTNLD28-TUMOR_peak_13934	chr10	68082081	68082271	+	8.98595	NA	intron (NM_013266, intron 12 of 17)	L1MEc|LINE|L1	-603616	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_91941	chr7	33447580	33447813	+	8.98595	NA	intron (NM_198428, intron 19 of 22)	L1PA3|LINE|L1	278544	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_32674	chr15	27304839	27305017	+	8.98595	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	88499	NM_033223	2567	Hs.569475	NM_033223	HPRD:02579	GABRG3	-	gamma-aminobutyric acid (GABA) A receptor, gamma 3	protein-coding
19-PTNLD28-TUMOR_peak_68781	chr3	64403652	64403788	+	8.98595	NA	Intergenic	Intergenic	-143302	NR_110151	101929335	Hs.476604	NR_110150		ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48576	chr19	34359758	34359917	+	8.98595	NA	Intergenic	Intergenic	72086	NM_024076	79047	Hs.221873	NM_024076	HPRD:13765	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_52184	chr2	38118210	38118313	+	8.98595	NA	Intergenic	Intergenic	-15255	NR_110012	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
19-PTNLD28-TUMOR_peak_108992	chrX	101906673	101906795	+	8.98595	NA	intron (NM_001184727, intron 2 of 5)	CpG-28159	405	NM_001184727	9737	Hs.729265	NM_014710	HPRD:02333	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_74645	chr4	16539352	16539611	+	8.98595	NA	intron (NM_001130834, intron 5 of 8)	intron (NM_001130834, intron 5 of 8)	84173	NR_049865	100847063		NR_049865		MIR548AX	-	microRNA 548ax	ncRNA
19-PTNLD28-TUMOR_peak_107438	chrX	6366205	6366356	+	8.98595	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-64276	NR_039927	100616373		NR_039927	miRBase:MI0017411	MIR4770	-	microRNA 4770	ncRNA
19-PTNLD28-TUMOR_peak_39655	chr17	1891622	1891738	+	8.98595	NA	intron (NM_178568, intron 1 of 1)	AluSc|SINE|Alu	36498	NM_178568	146760	Hs.22917	NM_178568	HPRD:11523	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88928	chr6	105644055	105644230	+	8.98595	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-16284	NM_022361	64208	Hs.458336	NM_022361		POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_108800	chrX	75803806	75803913	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	155813	NM_020932	57692	Hs.8453	NM_020932	HPRD:06583	MAGEE1	DAMAGE|HCA1	melanoma antigen family E, 1	protein-coding
19-PTNLD28-TUMOR_peak_28271	chr13	51845867	51846098	+	8.98595	NA	intron (NM_145019, intron 4 of 4)	intron (NM_145019, intron 4 of 4)	49512	NM_145019	220108	Hs.71913	NM_145019	HPRD:08704	FAM124A	-	family with sequence similarity 124A	protein-coding
19-PTNLD28-TUMOR_peak_52061	chr2	33645032	33645164	+	8.98595	NA	Intergenic	Intergenic	-16318	NM_170672	25780	Hs.143674	NM_015376	HPRD:15213	RASGRP3	GRP3	RAS guanyl releasing protein 3 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_25470	chr12	82085976	82086094	+	8.98595	NA	intron (NM_001220475, intron 2 of 30)	MLT1F2|LTR|ERVL-MaLR	66251	NM_001220476	8499	Hs.506216	NM_003625	HPRD:04392	PPFIA2	-	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_56544	chr2	159866932	159867048	+	8.98595	NA	intron (NM_001145909, intron 2 of 26)	intron (NM_001145909, intron 2 of 26)	41844	NM_033394	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_20780	chr11	98940688	98940935	+	8.98595	NA	intron (NM_001243270, intron 1 of 23)	intron (NM_001243270, intron 1 of 23)	49105	NM_014361	53942	Hs.656783	NM_014361	HPRD:06241	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
19-PTNLD28-TUMOR_peak_64630	chr22	22763784	22763873	+	8.98595	NA	Intergenic	Intergenic	99677	NM_080764	140883	Hs.43834	NM_080764	HPRD:11615	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
19-PTNLD28-TUMOR_peak_433	chr1	7359406	7359670	+	8.98595	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-471791	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_83407	chr5	154191585	154191716	+	8.98595	NA	intron (NM_015315, intron 18 of 18)	intron (NM_015315, intron 18 of 18)	38563	NM_032385	10826	Hs.519694	NM_016348	HPRD:12832	FAXDC2	C5orf4	fatty acid hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_18075	chr11	35724820	35724922	+	8.98595	NA	intron (NM_017583, intron 2 of 4)	L1PA3|LINE|L1	40518	NM_017583	54765	Hs.192103	NM_017583		TRIM44	DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
19-PTNLD28-TUMOR_peak_36490	chr16	15509654	15509746	+	8.98595	NA	Intergenic	Intergenic	-18625	NM_033201	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_81052	chr5	87348646	87348751	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	215998	NM_001289008	153396	Hs.379972	NM_153354	HPRD:14555	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
19-PTNLD28-TUMOR_peak_53713	chr2	84343463	84343572	+	8.98595	NA	Intergenic	L2a|LINE|L2	-174289	NR_003663	388965	Hs.664098	NM_001013648	HPRD:18390	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_66995	chr3	17449037	17449318	+	8.98595	NA	intron (NM_001134381, intron 5 of 23)	intron (NM_001134381, intron 5 of 23)	292335	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_22900	chr12	8101587	8101803	+	8.98595	NA	Intergenic	L4|LINE|RTE	-12803	NM_006931	6515	Hs.419240	NM_006931	HPRD:00686	SLC2A3	GLUT3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_51129	chr2	11196774	11196918	+	8.98595	NA	Intergenic	MIRb|SINE|MIR	75456	NR_040080	285150	Hs.329841	NM_182586	HPRD:08158	FLJ33534	-	uncharacterized LOC285150	ncRNA
19-PTNLD28-TUMOR_peak_26192	chr12	109715746	109715952	+	8.98595	NA	TTS (NM_213596)	TTS (NM_213596)	31176	NM_213596	121643	Hs.528316	NM_213596	HPRD:13550	FOXN4	-	forkhead box N4	protein-coding
19-PTNLD28-TUMOR_peak_30759	chr14	64912381	64912499	+	8.98595	NA	intron (NM_005956, intron 22 of 27)	intron (NM_005956, intron 22 of 27)	14999	NR_106755	102466162		NR_106755		MIR548AZ	hsa-mir-548az	microRNA 548az	ncRNA
19-PTNLD28-TUMOR_peak_47163	chr19	10056264	10056379	+	8.98595	NA	Intergenic	Intergenic	-9251	NM_058164	93145	Hs.169743	NM_058164	HPRD:10127	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
19-PTNLD28-TUMOR_peak_62863	chr21	18478423	18478545	+	8.98595	NA	Intergenic	L1PA11|LINE|L1	-332724	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_9883	chr1	209750212	209750302	+	8.98595	NA	Intergenic	Intergenic	-6788	NM_020439	57172	Hs.199068	NM_020439	HPRD:10807	CAMK1G	CLICK3|CLICKIII|VWS1|dJ272L16.1	calcium/calmodulin-dependent protein kinase IG	protein-coding
19-PTNLD28-TUMOR_peak_14987	chr10	95984515	95984684	+	8.98595	NA	intron (NM_001288989, intron 4 of 32)	intron (NM_001288989, intron 4 of 32)	62228	NR_033969	100128054	Hs.677562	NR_033969	ENSG00000268894	PLCE1-AS1	-	PLCE1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_66356	chr3	7995226	7995348	+	8.98595	NA	non-coding (NR_110131, exon 4 of 4)	non-coding (NR_110131, exon 4 of 4)	62707	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
19-PTNLD28-TUMOR_peak_69296	chr3	89638191	89638300	+	8.98595	NA	Intergenic	Intergenic	481571	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_77491	chr4	148440100	148440209	+	8.98595	NA	intron (NM_001166055, intron 2 of 5)	intron (NM_001166055, intron 2 of 5)	38085	NM_001957	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_108534	chrX	62424380	62424800	+	8.98595	NA	Intergenic	LTR25|LTR|ERV1	146628	NM_001012968	139886	Hs.612782	NM_001012968	HPRD:12556	SPIN4	-	spindlin family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_59804	chr20	10905385	10905702	+	8.98595	NA	Intergenic	Intergenic	-15623	NR_109866	101929413	Hs.385604	NR_109866	ENSG00000232900	LOC101929413	-	uncharacterized LOC101929413	ncRNA
19-PTNLD28-TUMOR_peak_31195	chr14	73132031	73132193	+	8.98595	NA	intron (NM_001280543, intron 10 of 10)	intron (NM_001280543, intron 10 of 10)	148584	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_34509	chr15	75044940	75045122	+	8.98595	NA	intron (NM_000761, intron 5 of 6)	intron (NM_000761, intron 5 of 6)	3847	NM_000761	1544	Hs.1361	NM_000761	HPRD:00489	CYP1A2	CP12|P3-450|P450(PA)	cytochrome P450, family 1, subfamily A, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_65193	chr22	32635892	32636046	+	8.98595	NA	intron (NM_014227, intron 5 of 14)	AluY|SINE|Alu	15349	NM_014227	6527	Hs.130101	NM_014227	HPRD:10238	SLC5A4	DJ90G24.4|SAAT1|SGLT3	solute carrier family 5 (glucose activated ion channel), member 4	protein-coding
19-PTNLD28-TUMOR_peak_45404	chr18	42169820	42169924	+	8.98595	NA	Intergenic	Intergenic	-58210	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_110028	chrX	154196043	154196170	+	8.98595	NA	intron (NM_000132, intron 7 of 25)	intron (NM_000132, intron 7 of 25)	54892	NM_000132	2157	Hs.632836	NM_000132	HPRD:02384	F8	AHF|DXS1253E|F8B|F8C|FVIII|HEMA	coagulation factor VIII, procoagulant component	protein-coding
19-PTNLD28-TUMOR_peak_45315	chr18	36617959	36618083	+	8.98595	NA	Intergenic	Intergenic	-638664	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_93575	chr7	77314628	77314823	+	8.98595	NA	intron (NR_038361, intron 1 of 2)	intron (NR_038361, intron 1 of 2)	-11018	NM_198467	222194	Hs.72451	NM_198467		RSBN1L	-	round spermatid basic protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_76906	chr4	123638126	123638285	+	8.98595	NA	Intergenic	Intergenic	15408	NR_024041	729338	Hs.647968	NR_024041		CETN4P	-	centrin EF-hand protein 4, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105409	chr9	113739891	113740003	+	8.98595	NA	intron (NM_057159, intron 1 of 4)	L1PA8|LINE|L1	60418	NM_001401	1902	Hs.126667	NM_001401	HPRD:03790	LPAR1	EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1	lysophosphatidic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_69517	chr3	104303659	104303816	+	8.98595	NA	Intergenic	LTR88c|LTR|Gypsy?	-357632	NR_030330	693127		NR_030330	miRBase:MI0003612	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
19-PTNLD28-TUMOR_peak_109473	chrX	130964848	130965069	+	8.98595	NA	promoter-TSS (NR_026975)	promoter-TSS (NR_026975)	-287	NR_026975	286467	Hs.720385	NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
19-PTNLD28-TUMOR_peak_88477	chr6	80487770	80487950	+	8.98595	NA	Intergenic	Intergenic	36224	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro-associated Y4	ncRNA
19-PTNLD28-TUMOR_peak_12838	chr10	32789719	32789945	+	8.98595	NA	intron (NM_001026383, intron 10 of 17)	SVA_B|Other|Other	54822	NR_109826	79741	Hs.585464	NM_024688	HPRD:10698	CCDC7	BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_31901	chr14	96692263	96692457	+	8.98595	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	21225	NM_000623	624	Hs.654542	NM_000623	HPRD:00213	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
19-PTNLD28-TUMOR_peak_97722	chr8	24102676	24102780	+	8.98595	NA	Intergenic	Intergenic	-48852	NM_021777	10863	Hs.174030	NM_014265	HPRD:08391	ADAM28	ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
19-PTNLD28-TUMOR_peak_46015	chr18	57504827	57505004	+	8.98595	NA	Intergenic	Intergenic	-62277	NM_021127	5366	Hs.96	NM_021127	HPRD:12002	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
19-PTNLD28-TUMOR_peak_107769	chrX	21684940	21685069	+	8.98595	NA	Intergenic	Intergenic	-8556	NM_153270	257240	Hs.448572	NM_153270	HPRD:06558	KLHL34	-	kelch-like family member 34	protein-coding
19-PTNLD28-TUMOR_peak_104793	chr9	98885102	98885314	+	8.98595	NA	Intergenic	Intergenic	-6515	NM_001256408	158434	Hs.381771	NM_001256408		LOC158434	-	uncharacterized LOC158434	protein-coding
19-PTNLD28-TUMOR_peak_102325	chr9	17063704	17063797	+	8.98595	NA	Intergenic	Intergenic	-71239	NM_001286985	54875	Hs.435381	NM_017738	HPRD:10800	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein, centrosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_20538	chr11	90209736	90209839	+	8.98595	NA	intron (NR_104190, intron 1 of 6)	intron (NR_104190, intron 1 of 6)	79238	NR_039711	100616186		NR_039711	miRBase:MI0016852	MIR4490	-	microRNA 4490	ncRNA
19-PTNLD28-TUMOR_peak_40330	chr17	16411406	16411575	+	8.98595	NA	Intergenic	L2c|LINE|L2	-15985	NM_207387	388341	Hs.25425	NM_207387	HPRD:16939	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
19-PTNLD28-TUMOR_peak_67215	chr3	24681909	24682011	+	8.98595	NA	Intergenic	Intergenic	-119034	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_71761	chr3	151513184	151513342	+	8.98595	NA	intron (NR_110202, intron 1 of 3)	intron (NR_110202, intron 1 of 3)	-18598	NM_001086	13	Hs.506908	NM_001086	HPRD:02640	AADAC	CES5A1|DAC	arylacetamide deacetylase	protein-coding
19-PTNLD28-TUMOR_peak_43607	chr17	74906072	74906259	+	8.98595	NA	intron (NM_198955, intron 7 of 15)	intron (NM_198955, intron 7 of 15)	37436	NM_198955	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_110320	chrY	27326993	27327097	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	3875	NR_001526	252949	Hs.522869	NR_001526	ENSG00000228240	TTTY17A	NCRNA00140|TTTY17	testis-specific transcript, Y-linked 17A (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77308	chr4	141874009	141874123	+	8.98595	NA	intron (NM_020724, intron 2 of 6)	Tigger3a|DNA|TcMar-Tigger	180550	NM_020724	57484	Hs.659104	NM_020724	HPRD:15258	RNF150	-	ring finger protein 150	protein-coding
19-PTNLD28-TUMOR_peak_65286	chr22	35965546	35965656	+	8.98595	NA	Intergenic	Intergenic	28249	NM_014310	23551	Hs.474711	NM_014310	HPRD:15210	RASD2	MGC:4834|Rhes|TEM2	RASD family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_16969	chr11	8549603	8549738	+	8.98595	NA	intron (NM_001289061, intron 1 of 12)	LTR23|LTR|ERV1	65885	NM_001289061	65975	Hs.501833	NM_030906	HPRD:09642	STK33	-	serine/threonine kinase 33	protein-coding
19-PTNLD28-TUMOR_peak_104923	chr9	101069112	101069286	+	8.98595	NA	intron (NM_005458, intron 14 of 18)	MLT1J|LTR|ERVL-MaLR	-51196	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_23959	chr12	46840517	46840630	+	8.98595	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	62683	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_74688	chr4	19384708	19384892	+	8.98595	NA	Intergenic	Intergenic	-870387	NM_001289135	9353	Hs.29802	NM_004787	HPRD:04776	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_28650	chr13	90757687	90757839	+	8.98595	NA	intron (NR_047489, intron 3 of 5)	L1MA4A|LINE|L1	14208	NR_047489	100874187	Hs.564526	NR_047489	ENSG00000261446	LINC00559	-	long intergenic non-protein coding RNA 559	ncRNA
19-PTNLD28-TUMOR_peak_46210	chr18	68031236	68031350	+	8.98595	NA	Intergenic	Intergenic	20534	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_23600	chr12	30741758	30741904	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	88347	NM_001190995	10526	Hs.505136	NM_006390	HPRD:09282	IPO8	RANBP8	importin 8	protein-coding
19-PTNLD28-TUMOR_peak_31379	chr14	76853577	76853741	+	8.98595	NA	intron (NM_004452, intron 1 of 10)	intron (NM_004452, intron 1 of 10)	15969	NM_004452	2103	Hs.435845	NM_004452	HPRD:03700	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_55643	chr2	130154891	130155021	+	8.98595	NA	Intergenic	Intergenic	-123492	NR_122040	151121	Hs.531687	NM_001033657	ENSG00000204460	LOC151121	-	uncharacterized LOC151121	ncRNA
19-PTNLD28-TUMOR_peak_44265	chr18	2198076	2198218	+	8.98595	NA	Intergenic	L2|LINE|L2	373342	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_15695	chr10	114658464	114658790	+	8.98595	NA	Intergenic	Intergenic	-51382	NM_001198531	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_82362	chr5	135701000	135701104	+	8.98595	NA	5' UTR (NM_001167576, exon 1 of 10)	5' UTR (NM_001167576, exon 1 of 10)	112	NM_020389	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_27583	chr13	28174166	28174272	+	8.98595	NA	intron (NM_153371, intron 1 of 9)	L2a|LINE|L2	20501	NM_153371	222484	Hs.132359	NM_153371	HPRD:10042	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
19-PTNLD28-TUMOR_peak_68916	chr3	69331415	69331607	+	8.98595	NA	intron (NM_015123, intron 5 of 22)	intron (NM_015123, intron 5 of 22)	103944	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_89911	chr6	149321127	149321230	+	8.98595	NA	intron (NM_005715, intron 5 of 7)	intron (NM_005715, intron 5 of 7)	-35358	NR_038408	100128176	Hs.557541	NR_038408		LOC100128176	-	uncharacterized LOC100128176	ncRNA
19-PTNLD28-TUMOR_peak_77160	chr4	139859608	139859735	+	8.98595	NA	Intergenic	Intergenic	-77242	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_22680	chr12	5898580	5898781	+	8.98595	NA	intron (NM_001278596, intron 10 of 25)	intron (NM_001278596, intron 10 of 25)	155745	NM_001278596	57101	Hs.148970	NM_020373	HPRD:11634	ANO2	C12orf3|TMEM16B	anoctamin 2, calcium activated chloride channel	protein-coding
19-PTNLD28-TUMOR_peak_76641	chr4	113030743	113030924	+	8.98595	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-35720	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_95587	chr7	135569296	135569594	+	8.98595	NA	Intergenic	MER58A|DNA|hAT-Charlie	92759	NM_145808	136319	Hs.602015	NM_145808	HPRD:07574	MTPN	GCDP|V-1	myotrophin	protein-coding
19-PTNLD28-TUMOR_peak_34325	chr15	71282527	71282617	+	8.98595	NA	intron (NM_001199017, intron 11 of 15)	L1PA3|LINE|L1	97790	NM_017691	54839	Hs.12692	NM_017691	HPRD:07880	LRRC49	PGs4	leucine rich repeat containing 49	protein-coding
19-PTNLD28-TUMOR_peak_18169	chr11	41037405	41037509	+	8.98595	NA	intron (NM_001258419, intron 1 of 6)	AluY|SINE|Alu	443729	NM_001258419	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_56534	chr2	159757907	159758084	+	8.98595	NA	Intergenic	Intergenic	-67151	NM_001145909	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96949	chr8	6984652	6984778	+	8.98595	NA	Intergenic	LTR5A|LTR|ERVK	-70456	NM_021010	1670	Hs.655233	NM_021010	HPRD:02720	DEFA5	DEF5|HD-5	defensin, alpha 5, Paneth cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_12830	chr10	32542291	32542393	+	8.98595	NA	Intergenic	Intergenic	93634	NM_001272019	80314	Hs.167805	NM_025209	HPRD:09941	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_33655	chr15	56029563	56029816	+	8.98595	NA	intron (NM_173814, intron 2 of 19)	intron (NM_173814, intron 2 of 19)	5488	NM_173814	283659	Hs.130957	NM_173814	HPRD:18765	PRTG	IGDCC5	protogenin	protein-coding
19-PTNLD28-TUMOR_peak_91826	chr7	30156508	30156722	+	8.98595	NA	intron (NM_001197027, intron 13 of 13)	intron (NM_001197027, intron 13 of 13)	-17937	NM_152793	222166	Hs.200100	NM_152793	HPRD:07635	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding
19-PTNLD28-TUMOR_peak_17327	chr11	13650284	13650382	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	-39873	NM_032228	84188	Hs.501991	NM_032228	HPRD:14724	FAR1	MLSTD2|SDR10E1	fatty acyl CoA reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_35327	chr15	93474132	93474293	+	8.98595	NA	intron (NM_001271, intron 5 of 38)	intron (NM_001271, intron 5 of 38)	26583	NR_036136	100422995		NR_036136		MIR3175	-	microRNA 3175	ncRNA
19-PTNLD28-TUMOR_peak_71974	chr3	157413027	157413156	+	8.98595	NA	Intergenic	Intergenic	151958	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_31500	chr14	81088231	81088383	+	8.98595	NA	intron (NM_152446, intron 18 of 23)	intron (NM_152446, intron 18 of 23)	317577	NM_152446	145508	Hs.162889	NM_152446	HPRD:09834	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128kDa	protein-coding
19-PTNLD28-TUMOR_peak_110126	chrY	3709026	3709116	+	8.98595	NA	Intergenic	Intergenic	261945	NM_139214	90655	Hs.112148	NM_139214	HPRD:18512	TGIF2LY	TGIFLY	TGFB-induced factor homeobox 2-like, Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_13718	chr10	59908514	59908680	+	8.98595	NA	Intergenic	AluY|SINE|Alu	119097	NM_152230	253430	Hs.30280	NM_152230	HPRD:17153	IPMK	-	inositol polyphosphate multikinase	protein-coding
19-PTNLD28-TUMOR_peak_82459	chr5	137854696	137854963	+	8.98595	NA	intron (NM_004730, intron 2 of 10)	intron (NM_004730, intron 2 of 10)	22571	NM_001282185	2107	Hs.483494	NM_004730	HPRD:02616	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
19-PTNLD28-TUMOR_peak_26941	chr12	124468547	124468688	+	8.98595	NA	intron (NM_001204299, intron 2 of 4)	intron (NM_001204299, intron 2 of 4)	10855	NM_001204299	100533183	Hs.432901	NM_001204299	ENSG00000255906	ZNF664-FAM101A	-	protein FAM101A	protein-coding
19-PTNLD28-TUMOR_peak_108044	chrX	42144436	42144529	+	8.98595	NA	Intergenic	SVA_D|Other|Other	-362195	NM_001126054	8573	Hs.495984	NM_003688	HPRD:02164	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
19-PTNLD28-TUMOR_peak_9066	chr1	197831951	197832207	+	8.98595	NA	Intergenic	ERVL-E-int|LTR|ERVL	-39603	NM_001024594	388722	Hs.61329	NM_001024594	HPRD:18611	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_108277	chrX	48964000	48964125	+	8.98595	NA	Intergenic	Intergenic	-6003	NM_007075	11152	Hs.632807	NM_007075	HPRD:06597	WDR45	NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
19-PTNLD28-TUMOR_peak_63003	chr21	28504766	28504903	+	8.98595	NA	Intergenic	Intergenic	-165395	NM_007038	11096	Hs.58324	NM_007038	HPRD:05420	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	ADAM metallopeptidase with thrombospondin type 1 motif, 5	protein-coding
19-PTNLD28-TUMOR_peak_88889	chr6	100644450	100644547	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-202384	NM_032503	84539	Hs.591342	NM_032503	HPRD:12088	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin-concentrating hormone receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_99174	chr8	72274010	72274310	+	8.98595	NA	5' UTR (NM_000503, exon 1 of 18)	5' UTR (NM_000503, exon 1 of 18)	307	NM_000503	2138	Hs.491997	NM_000503	HPRD:03388	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_34063	chr15	66506808	66507088	+	8.98595	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	39127	NM_032445	84465	Hs.712886	NM_032445	HPRD:14385	MEGF11	-	multiple EGF-like-domains 11	protein-coding
19-PTNLD28-TUMOR_peak_32837	chr15	31058764	31058901	+	8.98595	NA	intron (NR_038253, intron 5 of 5)	L1ME1|LINE|L1	-51407	NR_072991	390561	Hs.721293	NR_072991		HERC2P10	-	hect domain and RLD 2 pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_849	chr1	12556521	12556745	+	8.98595	NA	intron (NM_015378, intron 67 of 69)	intron (NM_015378, intron 67 of 69)	-10667	NR_003025	677885	Hs.658450	NR_003025		SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
19-PTNLD28-TUMOR_peak_66643	chr3	12036732	12036839	+	8.98595	NA	Intergenic	Intergenic	-9049	NM_003178	6854	Hs.445503	NM_003178		SYN2	SYNII	synapsin II	protein-coding
19-PTNLD28-TUMOR_peak_17686	chr11	25779907	25780122	+	8.98595	NA	Intergenic	L1PA7|LINE|L1	-573664	NM_031418	63982	Hs.91791	NM_031418	HPRD:15526	ANO3	C11orf25|DYT23|DYT24|TMEM16C	anoctamin 3	protein-coding
19-PTNLD28-TUMOR_peak_66365	chr3	8383793	8383928	+	8.98595	NA	intron (NR_033378, intron 3 of 3)	LTR71A|LTR|ERV1	159484	NR_033378	100288428	Hs.651576	NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_18783	chr11	59898131	59898231	+	8.98595	NA	Intergenic	Intergenic	42044	NM_001256916	2206	Hs.386748	NM_000139		MS4A2	APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1	membrane-spanning 4-domains, subfamily A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_41631	chr17	41598050	41598176	+	8.98595	NA	intron (NM_004941, intron 19 of 22)	intron (NM_004941, intron 19 of 22)	9690	NM_001261439	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_79382	chr5	33100798	33100893	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	153296	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
19-PTNLD28-TUMOR_peak_31106	chr14	70711873	70711984	+	8.98595	NA	TTS (NR_003951)	TTS (NR_003951)	2590	NR_003951	145241	Hs.712468	NR_003951	ENSG00000235812	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_84682	chr6	1016167	1016363	+	8.98595	NA	intron (NR_027115, intron 1 of 4)	intron (NR_027115, intron 1 of 4)	85302	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
19-PTNLD28-TUMOR_peak_69568	chr3	106982318	106982423	+	8.98595	NA	intron (NR_028302, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	22831	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	LINC00883	-	long intergenic non-protein coding RNA 883	ncRNA
19-PTNLD28-TUMOR_peak_15239	chr10	102433781	102433960	+	8.98595	NA	Intergenic	AluJb|SINE|Alu	-71598	NM_003988	5076	Hs.155644	NM_000278	HPRD:01330	PAX2	PAPRS	paired box 2	protein-coding
19-PTNLD28-TUMOR_peak_51236	chr2	13105690	13105806	+	8.98595	NA	Intergenic	Intergenic	41390	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
19-PTNLD28-TUMOR_peak_23589	chr12	29963113	29963243	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-25486	NM_175861	83857	Hs.401954	NM_175861	HPRD:12472	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38398	chr16	68074480	68074697	+	8.98595	NA	intron (NM_017803, intron 3 of 16)	intron (NM_017803, intron 3 of 16)	-16818	NM_018380	55794	Hs.458313	NM_018380	HPRD:06357	DDX28	MDDX28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding
19-PTNLD28-TUMOR_peak_72341	chr3	171596367	171596660	+	8.98595	NA	intron (NR_046852, intron 2 of 2)	X3_LINE|LINE|RTE-BovB	22017	NR_046852	100874219	Hs.730556	NR_046852		TMEM212-AS1	-	TMEM212 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69486	chr3	101798410	101798543	+	8.98595	NA	Intergenic	Intergenic	138773	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_20885	chr11	102811848	102811949	+	8.98595	NA	Intergenic	Intergenic	14565	NM_002427	4322	Hs.2936	NM_002427	HPRD:02522	MMP13	CLG3|MANDP1|MMP-13	matrix metallopeptidase 13 (collagenase 3)	protein-coding
19-PTNLD28-TUMOR_peak_28813	chr13	99492501	99492607	+	8.98595	NA	intron (NM_015296, intron 38 of 55)	intron (NM_015296, intron 38 of 55)	8216	NR_046663	100874096	Hs.578066	NR_046663		DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23868	chr12	43671522	43671720	+	8.98595	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	274103	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_79108	chr5	16560663	16560812	+	8.98595	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	-51630	NM_019000	54463	Hs.481704	NM_019000	HPRD:07879	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
19-PTNLD28-TUMOR_peak_83543	chr5	158583918	158584025	+	8.98595	NA	TTS (NM_001199381)	TTS (NM_001199381)	50685	NM_001199382	153830	Hs.349306	NM_144726	HPRD:08113	RNF145	-	ring finger protein 145	protein-coding
19-PTNLD28-TUMOR_peak_70870	chr3	132118229	132118364	+	8.98595	NA	Intergenic	Intergenic	-18257	NM_015268	23317	Hs.12707	NM_015268	HPRD:10915	DNAJC13	RME8	DnaJ (Hsp40) homolog, subfamily C, member 13	protein-coding
19-PTNLD28-TUMOR_peak_67968	chr3	47084029	47084132	+	8.98595	NA	exon (NM_014159, exon 17 of 21)	exon (NM_014159, exon 17 of 21)	31048	NR_024046	100129354	Hs.201522	NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52924	chr2	59652526	59652755	+	8.98595	NA	Intergenic	L2b|LINE|L2	207797	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LOC101927285	-	uncharacterized LOC101927285	ncRNA
19-PTNLD28-TUMOR_peak_32621	chr15	25614121	25614277	+	8.98595	NA	intron (NM_130838, intron 3 of 9)	intron (NM_130838, intron 3 of 9)	36454	NM_130838	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_109168	chrX	109693413	109693547	+	8.98595	NA	intron (NM_020769, intron 2 of 3)	intron (NM_020769, intron 2 of 3)	-10019	NM_001171689	9949	Hs.656243	NM_015365	HPRD:02182	AMMECR1	AMMERC1	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_31719	chr14	92378037	92378166	+	8.98595	NA	intron (NM_006329, intron 4 of 10)	intron (NM_006329, intron 4 of 10)	35945	NM_006329	10516	Hs.332708	NM_006329	HPRD:05204	FBLN5	ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|UP50	fibulin 5	protein-coding
19-PTNLD28-TUMOR_peak_21708	chr11	121694805	121694954	+	8.98595	NA	Intergenic	L1HS|LINE|L1	275673	NR_029671	406911		NR_029671	miRBase:MI0000446	MIR125B1	MIRN125B1	microRNA 125b-1	ncRNA
19-PTNLD28-TUMOR_peak_82913	chr5	143347747	143347866	+	8.98595	NA	Intergenic	Intergenic	156080	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_26055	chr12	107133212	107133335	+	8.98595	NA	intron (NM_213594, intron 15 of 17)	intron (NM_213594, intron 15 of 17)	-35126	NM_018157	55188	Hs.131306	NM_018157	HPRD:16452	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
19-PTNLD28-TUMOR_peak_89059	chr6	109834910	109835095	+	8.98595	NA	intron (NM_001145128, intron 32 of 40)	LTR26E|LTR|ERV1	-30562	NM_014797	9841	Hs.409876	NM_014797	HPRD:18315	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
19-PTNLD28-TUMOR_peak_4878	chr1	92864756	92864857	+	8.98595	NA	Intergenic	Intergenic	84550	NM_001127215	2672	Hs.73172	NM_005263	HPRD:07527	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcription repressor	protein-coding
19-PTNLD28-TUMOR_peak_38717	chr16	74931008	74931129	+	8.98595	NA	intron (NM_030581, intron 18 of 25)	intron (NM_030581, intron 18 of 25)	87949	NM_030581	79726	Hs.280951	NM_030581	HPRD:13351	WDR59	-	WD repeat domain 59	protein-coding
19-PTNLD28-TUMOR_peak_103915	chr9	78161676	78161833	+	8.98595	NA	intron (NR_031679, intron 2 of 2).2	intron (NR_031679, intron 2 of 2).2	176990	NR_031679	100302287		NR_031679		MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
19-PTNLD28-TUMOR_peak_27367	chr13	21000213	21000322	+	8.98595	NA	intron (NM_015974, intron 5 of 7)	intron (NM_015974, intron 5 of 7)	7718	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_14384	chr10	76897971	76898097	+	8.98595	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	26641	NM_144660	142891	Hs.744986	NM_144660	HPRD:18014	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_15512	chr10	106538295	106538395	+	8.98595	NA	intron (NM_014978, intron 1 of 26)	MIRb|SINE|MIR	-112371	NR_104028	100505890	Hs.348526	NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10355	chr1	224238648	224238754	+	8.98595	NA	Intergenic	Intergenic	-63088	NR_049764	23219	Hs.64691	NM_015176	HPRD:12367	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
19-PTNLD28-TUMOR_peak_89688	chr6	139592344	139592467	+	8.98595	NA	intron (NM_153235, intron 3 of 9)	intron (NM_153235, intron 3 of 9)	20803	NM_153235	167838	Hs.535820	NM_153235	HPRD:10793	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
19-PTNLD28-TUMOR_peak_14300	chr10	74124082	74124350	+	8.98595	NA	intron (NR_031657, intron 1 of 1)	intron (NR_031657, intron 1 of 1)	-9309	NM_017626	54788	Hs.500013	NM_017626	HPRD:07086	DNAJB12	DJ10	DnaJ (Hsp40) homolog, subfamily B, member 12	protein-coding
19-PTNLD28-TUMOR_peak_51337	chr2	16944844	16945133	+	8.98595	NA	Intergenic	LTR78|LTR|ERV1	-97854	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_30346	chr14	53835760	53835896	+	8.98595	NA	Intergenic	Intergenic	215756	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
19-PTNLD28-TUMOR_peak_109670	chrX	142668195	142668354	+	8.98595	NA	Intergenic	LTR4|LTR|ERV1	54045	NM_001184750	139065	Hs.272284	NM_173078	HPRD:06486	SLITRK4	-	SLIT and NTRK-like family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_23404	chr12	24397865	24398033	+	8.98595	NA	intron (NM_001261414, intron 4 of 16)	intron (NM_001261414, intron 4 of 16)	21744	NR_120473	101928471	Hs.569156	NR_120472		LOC101928471	-	uncharacterized LOC101928471	ncRNA
19-PTNLD28-TUMOR_peak_29978	chr14	38334568	38334690	+	8.98595	NA	Intergenic	Intergenic	-270304	NM_004496	3169	Hs.163484	NM_004496	HPRD:03801	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
19-PTNLD28-TUMOR_peak_7884	chr1	165190833	165191048	+	8.98595	NA	intron (NM_177398, intron 4 of 8)	intron (NM_177398, intron 4 of 8)	134538	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_18793	chr11	60524229	60524339	+	8.98595	NA	promoter-TSS (NM_001098835)	promoter-TSS (NM_001098835)	-56	NM_001098835	219995	Hs.207465	NM_152717	HPRD:17532	MS4A15	-	membrane-spanning 4-domains, subfamily A, member 15	protein-coding
19-PTNLD28-TUMOR_peak_75654	chr4	74140499	74140617	+	8.98595	NA	Intergenic	Intergenic	-16056	NM_198889	26057	Hs.601206	NM_032217	HPRD:10648	ANKRD17	GTAR|NY-BR-16	ankyrin repeat domain 17	protein-coding
19-PTNLD28-TUMOR_peak_33847	chr15	61356374	61356685	+	8.98595	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	164973	NM_134261	6095	Hs.560343	NM_002943	HPRD:02896	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR-related orphan receptor A	protein-coding
19-PTNLD28-TUMOR_peak_83810	chr5	169189788	169189963	+	8.98595	NA	intron (NM_004946, intron 25 of 51)	intron (NM_004946, intron 25 of 51)	125624	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_31583	chr14	88336093	88336247	+	8.98595	NA	Intergenic	LTR16B|LTR|ERVL	123445	NM_001201401	2581	Hs.513439	NM_000153	HPRD:06057	GALC	-	galactosylceramidase	protein-coding
19-PTNLD28-TUMOR_peak_20917	chr11	104322944	104323169	+	8.98595	NA	Intergenic	AluSx|SINE|Alu	156974	NR_120585	102723895	Hs.48803	NR_120585		LOC102723895	-	uncharacterized LOC102723895	ncRNA
19-PTNLD28-TUMOR_peak_109669	chrX	142549486	142549732	+	8.98595	NA	Intergenic	Intergenic	55694	NM_001009609	139067	Hs.447320	NM_001009609	HPRD:18092	SPANXN3	CT11.8|SPANX-N3	SPANX family, member N3	protein-coding
19-PTNLD28-TUMOR_peak_78142	chr4	180213755	180213903	+	8.98595	NA	Intergenic	Intergenic	-1384739	NR_108092	101928656	Hs.508131	NR_108092		LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
19-PTNLD28-TUMOR_peak_68884	chr3	68413153	68413256	+	8.98595	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	359845	NM_213609	407738	Hs.655061	NM_213609	HPRD:13294	FAM19A1	TAFA-1|TAFA1	family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	protein-coding
19-PTNLD28-TUMOR_peak_44468	chr18	8912462	8912699	+	8.98595	NA	Intergenic	Intergenic	-190048	NM_021074	4729	Hs.464572	NM_021074	HPRD:02757	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_69453	chr3	101158510	101158764	+	8.98595	NA	intron (NM_001077203, intron 4 of 22)	SVA_F|Other|Other	73448	NM_001282801	57337	Hs.529551	NM_020654	HPRD:07154	SENP7	-	SUMO1/sentrin specific peptidase 7	protein-coding
19-PTNLD28-TUMOR_peak_101179	chr8	134963393	134963514	+	8.98595	NA	Intergenic	L1MB3|LINE|L1	64714	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_61287	chr20	43664958	43665092	+	8.98595	NA	intron (NM_006282, intron 10 of 10)	MER44C|DNA|TcMar-Tigger	64728	NM_002251	3787	Hs.117780	NM_002251	HPRD:04214	KCNS1	KV9.1	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_108587	chrX	67000591	67000887	+	8.98595	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	212056	NM_001011645	367	Hs.76704	NM_000044	HPRD:02437	AR	AIS|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM	androgen receptor	protein-coding
19-PTNLD28-TUMOR_peak_104067	chr9	82664091	82664251	+	8.98595	NA	Intergenic	Intergenic	74233	NR_121212	101927477	Hs.571630	NR_121212		LINC01507	-	long intergenic non-protein coding RNA 1507	ncRNA
19-PTNLD28-TUMOR_peak_90127	chr6	154298079	154298233	+	8.98595	NA	Intergenic	Intergenic	-33475	NM_001145280	4988	Hs.2353	NM_000914	HPRD:02484	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor, mu 1	protein-coding
19-PTNLD28-TUMOR_peak_54906	chr2	111471233	111471403	+	8.98595	NA	Intergenic	Intergenic	-18832	NM_001142807	55289	Hs.253320	NM_018308	HPRD:12418	ACOXL	-	acyl-CoA oxidase-like	protein-coding
19-PTNLD28-TUMOR_peak_100808	chr8	128665934	128666099	+	8.98595	NA	Intergenic	MLT2A1|LTR|ERVL	80197	NR_117101	100270680	Hs.333720	NR_117101	ENSG00000249375	CASC11	CARLo-7|LINC00990|TCONS_00014535	cancer susceptibility candidate 11 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23264	chr12	15982896	15983057	+	8.98595	NA	Intergenic	Intergenic	-40466	NM_004447	2059	Hs.591160	NM_004447	HPRD:02563	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
19-PTNLD28-TUMOR_peak_35016	chr15	85826060	85826256	+	8.98595	NA	Intergenic	Intergenic	-77640	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_49066	chr19	40811378	40811486	+	8.98595	NA	Intergenic	Intergenic	-20130	NM_001243027	208	Hs.631535	NM_001626	HPRD:01262	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	v-akt murine thymoma viral oncogene homolog 2	protein-coding
19-PTNLD28-TUMOR_peak_109836	chrX	152148082	152148195	+	8.98595	NA	Intergenic	L2a|LINE|L2	12623	NM_001103151	114824	Hs.573567	NM_052926	HPRD:06678	PNMA5	-	paraneoplastic Ma antigen family member 5	protein-coding
19-PTNLD28-TUMOR_peak_105010	chr9	103202484	103202579	+	8.98595	NA	intron (NM_001198806, intron 1 of 2)	intron (NM_001198806, intron 1 of 2)	-1657	NM_001198812	100526694	Hs.598100	NM_001198812	ENSG00000251349	MSANTD3-TMEFF1	C9orf3-TMEFF1|C9orf30-TMEFF1	MSANTD3-TMEFF1 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_29971	chr14	38013763	38013893	+	8.98595	NA	intron (NM_138731, intron 13 of 13)	intron (NM_138731, intron 13 of 13)	50497	NM_004496	3169	Hs.163484	NM_004496	HPRD:03801	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
19-PTNLD28-TUMOR_peak_81145	chr5	91315355	91315474	+	8.98595	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-636265	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_30343	chr14	53773809	53773915	+	8.98595	NA	Intergenic	Intergenic	153790	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
19-PTNLD28-TUMOR_peak_107437	chrX	6350396	6350587	+	8.98595	NA	Intergenic	Intergenic	-48487	NR_039927	100616373		NR_039927	miRBase:MI0017411	MIR4770	-	microRNA 4770	ncRNA
19-PTNLD28-TUMOR_peak_80642	chr5	73038397	73038647	+	8.98595	NA	intron (NM_001080479, intron 2 of 36)	AluYb8|SINE|Alu	-70821	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_65516	chr22	39070958	39071127	+	8.98595	NA	Intergenic	Intergenic	-6912	NM_020243	56993	Hs.595072	NM_020243	HPRD:06130	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_57314	chr2	183077112	183077202	+	8.98595	NA	intron (NM_001003683, intron 8 of 14)	L1PA3|LINE|L1	29633	NM_001258314	5136	Hs.191046	NM_005019	HPRD:01387	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_34227	chr15	69814836	69814933	+	8.98595	NA	Intergenic	AluJb|SINE|Alu	-39175	NR_026979	145837	Hs.410126	NR_026979		LOC145837	-	uncharacterized LOC145837	ncRNA
19-PTNLD28-TUMOR_peak_53419	chr2	71858595	71858808	+	8.98595	NA	intron (NM_001130987, intron 41 of 55)	intron (NM_001130987, intron 41 of 55)	164869	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_53544	chr2	74562075	74562270	+	8.98595	NA	intron (NM_133478, intron 3 of 30)	intron (NM_133478, intron 3 of 30)	8362	NM_133478	57835	Hs.594099	NM_021196	HPRD:08420	SLC4A5	NBC4	solute carrier family 4 (sodium bicarbonate cotransporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_13604	chr10	52155148	52155283	+	8.98595	NA	intron (NM_147156, intron 6 of 10)	Tigger13a|DNA|TcMar-Tigger	-146845	NM_001143974	56624	Hs.512645	NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	protein-coding
19-PTNLD28-TUMOR_peak_39563	chr17	597748	597843	+	8.98595	NA	intron (NM_001128159, intron 4 of 21)	intron (NM_001128159, intron 4 of 21)	20301	NM_001128159	55275	Hs.461819	NM_018289	HPRD:07720	VPS53	HCCS1|PCH2E|hVps53L|pp13624	vacuolar protein sorting 53 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_30711	chr14	63588731	63588841	+	8.98595	NA	Intergenic	L1HS|LINE|L1	-76830	NM_139318	27133	Hs.27043	NM_139318	HPRD:10421	KCNH5	EAG2|H-EAG2|Kv10.2|hEAG2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
19-PTNLD28-TUMOR_peak_28711	chr13	95837693	95837838	+	8.98595	NA	intron (NM_001105515, intron 11 of 20)	intron (NM_001105515, intron 11 of 20)	115922	NM_001105515	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_1655	chr1	26471692	26471834	+	8.98595	NA	Intergenic	Intergenic	-13748	NM_024869	79927	Hs.694119	NM_024869	HPRD:07848	FAM110D	GRRP1	family with sequence similarity 110, member D	protein-coding
19-PTNLD28-TUMOR_peak_25323	chr12	72676647	72676779	+	8.98595	NA	intron (NM_013381, intron 1 of 18)	MER20|DNA|hAT-Charlie	-9424	NR_026836	283392	Hs.363603	NM_001025457	HPRD:18764	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108228	chrX	48390139	48390283	+	8.98595	NA	Intergenic	MLT1B-int|LTR|ERVL-MaLR	-7864	NM_002536	4943	Hs.694353	NM_002536	HPRD:08948	TBC1D25	MG81|OATL1	TBC1 domain family, member 25	protein-coding
19-PTNLD28-TUMOR_peak_31545	chr14	82814396	82814492	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-725039	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
19-PTNLD28-TUMOR_peak_17033	chr11	9324125	9324226	+	8.98595	NA	intron (NM_001165030, intron 1 of 2)	intron (NM_001165030, intron 1 of 2)	12140	NM_015012	440026	Hs.594563	NM_015012	HPRD:18632	TMEM41B	-	transmembrane protein 41B	protein-coding
19-PTNLD28-TUMOR_peak_38618	chr16	71645053	71645147	+	8.98595	NA	Intergenic	Intergenic	-14956	NM_001271329	91862	Hs.513706	NM_052858	HPRD:14365	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_40995	chr17	31270947	31271116	+	8.98595	NA	Intergenic	Intergenic	16103	NM_001033504	26022	Hs.3447	NM_015544	HPRD:13171	TMEM98	-	transmembrane protein 98	protein-coding
19-PTNLD28-TUMOR_peak_82171	chr5	132888744	132888852	+	8.98595	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	59425	NM_015082	23105	Hs.483390	NM_015082	HPRD:17022	FSTL4	-	follistatin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_107800	chrX	22717661	22717878	+	8.98595	NA	intron (NR_073010, intron 4 of 5)	intron (NR_073010, intron 4 of 5)	-300309	NM_182699	168400	Hs.434416	NM_182699	HPRD:06466	DDX53	CAGE|CT26	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	protein-coding
19-PTNLD28-TUMOR_peak_96869	chr8	1734758	1734968	+	8.98595	NA	TTS (NM_018941)	TTS (NM_018941)	22993	NM_018941	2055	Hs.127675	NM_018941	HPRD:06383	CLN8	C8orf61|EPMR	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	protein-coding
19-PTNLD28-TUMOR_peak_30677	chr14	62051132	62051241	+	8.98595	NA	intron (NR_039985, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	-13815	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_34265	chr15	70403796	70403899	+	8.98595	NA	Intergenic	Intergenic	-13591	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_51258	chr2	15717353	15717453	+	8.98595	NA	Intergenic	L2c|LINE|L2	-14342	NM_004939	1653	Hs.440599	NM_004939	HPRD:03158	DDX1	DBP-RB|UKVH5d	DEAD (Asp-Glu-Ala-Asp) box helicase 1	protein-coding
19-PTNLD28-TUMOR_peak_100056	chr8	108825799	108825892	+	8.98595	NA	Intergenic	Intergenic	269586	NM_001282863	340419	Hs.444834	NM_178565	HPRD:17536	RSPO2	CRISTIN2	R-spondin 2	protein-coding
19-PTNLD28-TUMOR_peak_17082	chr11	10376836	10376974	+	8.98595	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	47045	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
19-PTNLD28-TUMOR_peak_56460	chr2	157632487	157632580	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	339633	NM_000408	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_108937	chrX	96144754	96144866	+	8.98595	NA	intron (NM_007309, intron 5 of 26)	L2a|LINE|L2	5903	NM_013347	29935	Hs.659349	NM_013347	HPRD:06591	RPA4	HSU24186	replication protein A4, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_45737	chr18	47937415	47937523	+	8.98595	NA	Intergenic	Intergenic	36077	NM_001039535	220134	Hs.134726	NM_145060	HPRD:12689	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_77027	chr4	129112595	129112689	+	8.98595	NA	intron (NM_018078, intron 15 of 19)	L1MA4|LINE|L1	97342	NM_006320	10424	Hs.507910	NM_006320	HPRD:09665	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
19-PTNLD28-TUMOR_peak_14973	chr10	95653651	95653936	+	8.98595	NA	promoter-TSS (NM_153226)	promoter-TSS (NM_153226)	63	NM_001134658	159371	Hs.632085	NM_153226	HPRD:15531	SLC35G1	C10orf60|TMEM20	solute carrier family 35, member G1	protein-coding
19-PTNLD28-TUMOR_peak_51428	chr2	20212531	20212636	+	8.98595	NA	promoter-TSS (NM_002381)	promoter-TSS (NM_002381)	-128	NM_002381	4148	Hs.656199	NM_002381	HPRD:03661	MATN3	DIPOA|EDM5|HOA|OADIP|OS2	matrilin 3	protein-coding
19-PTNLD28-TUMOR_peak_14658	chr10	85546290	85546381	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-352850	NM_014394	27069	Hs.352656	NM_014394	HPRD:17038	GHITM	DERP2|HSPC282|MICS1|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_25958	chr12	105435091	105435209	+	8.98595	NA	intron (NM_001034173, intron 15 of 22)	L1MC4|LINE|L1	43191	NR_027752	160428	Hs.42572	NM_001034173	HPRD:18742	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding
19-PTNLD28-TUMOR_peak_56129	chr2	144419177	144419306	+	8.98595	NA	intron (NM_018460, intron 12 of 13)	L1PA2|LINE|L1	-275393	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
19-PTNLD28-TUMOR_peak_80569	chr5	71651695	71651859	+	8.98595	NA	intron (NM_001284405, intron 8 of 8)	intron (NM_001284405, intron 8 of 8)	35583	NM_001284404	79810	Hs.126906	NM_024754	HPRD:15193	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
19-PTNLD28-TUMOR_peak_109452	chrX	129683440	129683539	+	8.98595	NA	Intergenic	Intergenic	54574	NR_027141	55855	Hs.567120	NM_018472		FAM45B	HT011	family with sequence similarity 45, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30745	chr14	64541716	64541904	+	8.98595	NA	intron (NM_182914, intron 53 of 115)	intron (NM_182914, intron 53 of 115)	-139049	NM_182913	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_105643	chr9	117871962	117872105	+	8.98595	NA	intron (NM_002160, intron 1 of 27)	intron (NM_002160, intron 1 of 27)	8503	NM_002160	3371	Hs.143250	NM_002160	HPRD:01756	TNC	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C	tenascin C	protein-coding
19-PTNLD28-TUMOR_peak_56467	chr2	157888683	157888855	+	8.98595	NA	Intergenic	Intergenic	-225571	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_101944	chr9	1558944	1559037	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	-456229	NM_003070	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28394	chr13	61924606	61924764	+	8.98595	NA	Intergenic	Intergenic	64970	NM_022843	64881	Hs.391781	NM_022843	ENSG00000197991	PCDH20	PCDH13	protocadherin 20	protein-coding
19-PTNLD28-TUMOR_peak_93632	chr7	80008475	80008644	+	8.98595	NA	Intergenic	Intergenic	-4804	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
19-PTNLD28-TUMOR_peak_46009	chr18	57371483	57371572	+	8.98595	NA	Intergenic	AluJo|SINE|Alu	-6883	NM_133459	147372	Hs.34333	NM_133459	HPRD:08703	CCBE1	-	collagen and calcium binding EGF domains 1	protein-coding
19-PTNLD28-TUMOR_peak_92510	chr7	49758464	49758691	+	8.98595	NA	Intergenic	Intergenic	-54680	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24635	chr12	56268299	56268465	+	8.98595	NA	Intergenic	LTR49-int|LTR|ERV1	-31615	NM_001272101	4327	Hs.591033	NM_002429		MMP19	MMP18|RASI-1	matrix metallopeptidase 19	protein-coding
19-PTNLD28-TUMOR_peak_77078	chr4	130760987	130761100	+	8.98595	NA	Intergenic	Intergenic	-68410	NR_110753	101927282	Hs.407480	NR_110753	ENSG00000246876	LOC101927282	-	uncharacterized LOC101927282	ncRNA
19-PTNLD28-TUMOR_peak_13704	chr10	57728817	57728914	+	8.98595	NA	Intergenic	AluSx3|SINE|Alu	370115	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
19-PTNLD28-TUMOR_peak_51313	chr2	16615826	16615952	+	8.98595	NA	Intergenic	Intergenic	231245	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_94614	chr7	103864983	103865073	+	8.98595	NA	Intergenic	L1ME1|LINE|L1	-16533	NM_002553	5001	Hs.432948	NM_002553	HPRD:09086	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex, subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_35090	chr15	88517231	88517417	+	8.98595	NA	intron (NM_001012338, intron 14 of 19)	intron (NM_001012338, intron 14 of 19)	-278637	NR_038229	283738	Hs.578429	NR_038229	ENSG00000260305	NTRK3-AS1	-	NTRK3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28653	chr13	90946240	90946468	+	8.98595	NA	Intergenic	LTR71A|LTR|ERV1	62918	NR_030754	693207		NR_030754	miRBase:MI0003636	MIR622	MIRN622|hsa-mir-622	microRNA 622	ncRNA
19-PTNLD28-TUMOR_peak_91466	chr7	19979453	19979622	+	8.98595	NA	intron (NR_110114, intron 5 of 5)	intron (NR_110114, intron 5 of 5)	-167133	NM_152774	256130	Hs.487670	NM_152774	HPRD:14617	TMEM196	-	transmembrane protein 196	protein-coding
19-PTNLD28-TUMOR_peak_20872	chr11	102601781	102602041	+	8.98595	NA	Intergenic	(CCCA)n|Simple_repeat|Simple_repeat	-6226	NM_002424	4317	Hs.161839	NM_002424	HPRD:00385	MMP8	CLG1|HNC|MMP-8|PMNL-CL	matrix metallopeptidase 8 (neutrophil collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_27054	chr12	125984183	125984290	+	8.98595	NA	intron (NM_052907, intron 3 of 8)	MER11D|LTR|ERVK	-122762	NM_001286219	114795	Hs.524838	NM_052907		TMEM132B	-	transmembrane protein 132B	protein-coding
19-PTNLD28-TUMOR_peak_59700	chr20	6991167	6991418	+	8.98595	NA	Intergenic	MER41B|LTR|ERV1	242547	NM_001200	650	Hs.73853	NM_001200	HPRD:00206	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91736	chr7	27176137	27176272	+	8.98595	NA	Intergenic	Intergenic	-3779	NR_038832	100133311	Hs.610216	NR_038831	ENSG00000254369	HOXA-AS3	HOXA6as	HOXA cluster antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_800	chr1	11943093	11943212	+	8.98595	NA	Intergenic	Intergenic	-24160	NM_002521	4879	Hs.219140	NM_002521	HPRD:08974	NPPB	BNP	natriuretic peptide B	protein-coding
19-PTNLD28-TUMOR_peak_76519	chr4	108694633	108694749	+	8.98595	NA	Intergenic	LTR40b|LTR|ERVL	-51030	NM_001136258	166929	Hs.595423	NM_152621	HPRD:11323	SGMS2	SMS2	sphingomyelin synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_14982	chr10	95801911	95802034	+	8.98595	NA	intron (NM_001288989, intron 2 of 32)	intron (NM_001288989, intron 2 of 32)	-46811	NM_001165979	51196	Hs.655033	NM_016341	HPRD:07087	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_51239	chr2	13663459	13663579	+	8.98595	NA	Intergenic	Intergenic	-516381	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
19-PTNLD28-TUMOR_peak_53640	chr2	76827028	76827117	+	8.98595	NA	Intergenic	LTR41|LTR|ERVL	-386019	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
19-PTNLD28-TUMOR_peak_36169	chr16	9398038	9398276	+	8.98595	NA	Intergenic	MER90a|LTR|ERV1	69383	NR_036166	100422920		NR_036166	miRBase:MI0014244	MIR548X	-	microRNA 548x	ncRNA
19-PTNLD28-TUMOR_peak_52084	chr2	35793675	35793800	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	788976	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_99556	chr8	95625239	95625524	+	8.98595	NA	Intergenic	Intergenic	26314	NR_034034	100288748	Hs.608210	NR_034034	ENSG00000261437	LOC100288748	-	uncharacterized LOC100288748	ncRNA
19-PTNLD28-TUMOR_peak_66409	chr3	8936332	8936435	+	8.98595	NA	intron (NM_020165, intron 11 of 12)	intron (NM_020165, intron 11 of 12)	68776	NM_020165	56852	Hs.375684	NM_020165	HPRD:09242	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_31606	chr14	89604042	89604142	+	8.98595	NA	Intergenic	Intergenic	279362	NM_005197	1112	Hs.434286	NM_005197	HPRD:07533	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19-PTNLD28-TUMOR_peak_14743	chr10	88649355	88649455	+	8.98595	NA	intron (NM_004329, intron 3 of 12)	U1|snRNA|snRNA	68020	NM_024756	79812	Hs.524479	NM_024756	HPRD:10601	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_83305	chr5	151451711	151451849	+	8.98595	NA	intron (NR_109876, intron 1 of 2)	intron (NR_109876, intron 1 of 2)	113321	NR_109876	101927115	Hs.549665	NR_109876	ENSG00000254226	CTB-12O2.1	-	uncharacterized LOC101927115	ncRNA
19-PTNLD28-TUMOR_peak_10550	chr1	227379995	227380123	+	8.98595	NA	intron (NM_014826, intron 5 of 34)	MER5A|DNA|hAT-Charlie	125767	NM_014826	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_32525	chr15	22441977	22442160	+	8.98595	NA	Intergenic	Intergenic	28606	NR_028067	390539	Hs.666555	NR_028067	ENSG00000259435	OR4N3P	OR15-2	olfactory receptor, family 4, subfamily N, member 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_33530	chr15	50208750	50208948	+	8.98595	NA	intron (NR_073596, intron 20 of 27)	intron (NR_073596, intron 20 of 27)	196664	NR_073598	79895	Hs.511311	NM_024837	HPRD:10681	ATP8B4	ATPIM	ATPase, class I, type 8B, member 4	protein-coding
19-PTNLD28-TUMOR_peak_81747	chr5	119090745	119090835	+	8.98595	NA	Intergenic	LTR2B|LTR|ERV1	125536	NM_182761	340069	Hs.713304	NM_182761	HPRD:14174	FAM170A	ZNFD	family with sequence similarity 170, member A	protein-coding
19-PTNLD28-TUMOR_peak_83648	chr5	160301049	160301153	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-21882	NM_025153	23120	Hs.109358	NM_025153	HPRD:08637	ATP10B	ATPVB	ATPase, class V, type 10B	protein-coding
19-PTNLD28-TUMOR_peak_91752	chr7	28101913	28102022	+	8.98595	NA	intron (NM_175061, intron 1 of 4)	LTR41B|LTR|ERVL	-118109	NR_034097	100128081	Hs.434307	NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71317	chr3	140812929	140813175	+	8.98595	NA	intron (NM_080862, intron 2 of 2)	intron (NM_080862, intron 2 of 2)	42309	NM_080862	92369	Hs.655112	NM_080862	HPRD:18108	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_22570	chr12	3886513	3886644	+	8.98595	NA	Intergenic	Intergenic	-24212	NM_032680	84766	Hs.504534	NM_032680	HPRD:10079	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
19-PTNLD28-TUMOR_peak_69369	chr3	98257483	98257576	+	8.98595	NA	Intergenic	Tigger12A|DNA|TcMar-Tigger	6786	NM_005290	2838	Hs.563128	NM_005290	HPRD:03102	GPR15	BOB	G protein-coupled receptor 15	protein-coding
19-PTNLD28-TUMOR_peak_76442	chr4	103700022	103700134	+	8.98595	NA	Intergenic	LTR1C|LTR|ERV1	-17927	NM_005908	4126	Hs.480415	NM_005908	HPRD:02008	MANBA	MANB1	mannosidase, beta A, lysosomal	protein-coding
19-PTNLD28-TUMOR_peak_97094	chr8	9853323	9853431	+	8.98595	NA	Intergenic	Intergenic	-58402	NM_012331	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_29359	chr14	21296737	21296853	+	8.98595	NA	Intergenic	LTR10F|LTR|ERV1	-25759	NM_198234	6035	Hs.78224	NM_002933	HPRD:01591	RNASE1	RAC1|RIB1|RNS1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_16894	chr11	6877325	6877480	+	8.98595	NA	Intergenic	Intergenic	10488	NM_178168	144124	Hs.447478	NM_178168	HPRD:16339	OR10A5	JCG6|OR10A1|OR11-403	olfactory receptor, family 10, subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_67185	chr3	24143576	24143680	+	8.98595	NA	intron (NR_026834, intron 1 of 1)	MER5B|DNA|hAT-Charlie	1110	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
19-PTNLD28-TUMOR_peak_17127	chr11	10965642	10965796	+	8.98595	NA	Intergenic	Intergenic	85955	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54699	chr2	106747406	106747581	+	8.98595	NA	intron (NR_045607, intron 5 of 13)	L1PA2|LINE|L1	7844	NM_001253876	80146	Hs.469561	NM_025076	HPRD:15642	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_45786	chr18	49063945	49064075	+	8.98595	NA	intron (NR_040074, intron 1 of 2)	intron (NR_040074, intron 1 of 2)	145598	NR_040074	100287225	Hs.448920	NR_040074	ENSG00000227115	LOC100287225	-	uncharacterized LOC100287225	ncRNA
19-PTNLD28-TUMOR_peak_35039	chr15	86071266	86071479	+	8.98595	NA	intron (NM_007200, intron 3 of 36)	intron (NM_007200, intron 3 of 36)	-91809	NM_001270546	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_16558	chr11	1246296	1246621	+	8.98595	NA	intron (NM_002458, intron 1 of 48)	intron (NM_002458, intron 1 of 48)	2163	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_76140	chr4	87362365	87362520	+	8.98595	NA	intron (NM_002753, intron 1 of 13)	intron (NM_002753, intron 1 of 13)	11841	NM_002753	5602	Hs.13438	NM_002753	HPRD:04207	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_92008	chr7	35888982	35889109	+	8.98595	NA	intron (NM_001011553, intron 2 of 12)	MER1B|DNA|hAT-Charlie	48449	NM_001011553	989	Hs.191346	NM_001788		SEPT7	CDC10|CDC3|NBLA02942|SEPT7A	septin 7	protein-coding
19-PTNLD28-TUMOR_peak_74881	chr4	27443884	27443980	+	8.98595	NA	Intergenic	L1M5|LINE|L1	581619	NM_020860	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_77105	chr4	135129417	135129521	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-6566	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_80068	chr5	57626717	57626924	+	8.98595	NA	Intergenic	Intergenic	129146	NM_006622	10769	Hs.398157	NM_006622	HPRD:06118	PLK2	SNK|hPlk2|hSNK	polo-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_76925	chr4	124286204	124286339	+	8.98595	NA	Intergenic	Intergenic	-31679	NM_199327	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_99157	chr8	71298253	71298380	+	8.98595	NA	intron (NM_006540, intron 1 of 22)	intron (NM_006540, intron 1 of 22)	17704	NM_006540	10499	Hs.446678	NM_006540	HPRD:09066	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
19-PTNLD28-TUMOR_peak_91043	chr7	4943422	4943582	+	8.98595	NA	intron (NR_072989, intron 8 of 8)	intron (NR_072989, intron 8 of 8)	-20167	NM_018059	55698	Hs.667336	NM_018059	HPRD:07663	RADIL	RASIP2	Ras association and DIL domains	protein-coding
19-PTNLD28-TUMOR_peak_99229	chr8	74952092	74952322	+	8.98595	NA	Intergenic	LTR13A|LTR|ERVK	48643	NM_001195797	23643	Hs.726603	NM_015364	HPRD:05579	LY96	ESOP-1|MD-2|MD2|ly-96	lymphocyte antigen 96	protein-coding
19-PTNLD28-TUMOR_peak_67917	chr3	46204826	46204951	+	8.98595	NA	Intergenic	L1PA12|LINE|L1	44944	NM_001295	1230	Hs.301921	NM_001295	HPRD:03101	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	chemokine (C-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_35373	chr15	97566495	97566640	+	8.98595	NA	Intergenic	L1MB8|LINE|L1	239888	NM_173499	145946	Hs.326528	NM_173499	HPRD:15432	SPATA8	SRG8	spermatogenesis associated 8	protein-coding
19-PTNLD28-TUMOR_peak_40970	chr17	30537597	30537699	+	8.98595	NA	intron (NM_001288758, intron 20 of 20)	intron (NM_001288758, intron 20 of 20)	-55547	NM_138328	162494	Hs.655027	NM_138328	HPRD:07501	RHBDL3	RHBDL4|VRHO	rhomboid, veinlet-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_101284	chr8	137866060	137866238	+	8.98595	NA	Intergenic	MER61A|LTR|ERV1	559682	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_88896	chr6	100912857	100913076	+	8.98595	NA	Intergenic	CpG	-1415	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_102146	chr9	7879619	7879821	+	8.98595	NA	Intergenic	L1PA8|LINE|L1	-79921	NM_033428	90871	Hs.7517	NM_033428	HPRD:12939	TMEM261	C9orf123	transmembrane protein 261	protein-coding
19-PTNLD28-TUMOR_peak_77581	chr4	152198054	152198155	+	8.98595	NA	promoter-TSS (NM_183375)	promoter-TSS (NM_183375)	-221	NM_183375	345062	Hs.651266	NM_183375	HPRD:07110	PRSS48	ESSPL	protease, serine, 48	protein-coding
19-PTNLD28-TUMOR_peak_27815	chr13	35043478	35043634	+	8.98595	NA	intron (NR_047036, intron 2 of 2)	intron (NR_047036, intron 2 of 2)	171266	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA
19-PTNLD28-TUMOR_peak_108767	chrX	73770310	73770423	+	8.98595	NA	Intergenic	Intergenic	64095	NM_183353	51132	Hs.653288	NM_016120	HPRD:02304	RLIM	NY-REN-43|RNF12	ring finger protein, LIM domain interacting	protein-coding
19-PTNLD28-TUMOR_peak_58540	chr2	220899217	220899311	+	8.98595	NA	Intergenic	Intergenic	-127978	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_29673	chr14	27509867	27509965	+	8.98595	NA	Intergenic	Intergenic	132068	NR_036193	100423019		NR_036193	miRBase:MI0015838	MIR4307	-	microRNA 4307	ncRNA
19-PTNLD28-TUMOR_peak_75548	chr4	66348219	66348438	+	8.98595	NA	intron (NM_001281766, intron 5 of 16)	intron (NM_001281766, intron 5 of 16)	-187351	NR_034138	100144602	Hs.201854	NR_034138	ENSG00000250846	EPHA5-AS1	-	EPHA5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88754	chr6	90797851	90797991	+	8.98595	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	193733	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_16848	chr11	6044324	6044474	+	8.98595	NA	Intergenic	Intergenic	4572	NM_001001917	120796	Hs.553543	NM_001001917	HPRD:17746	OR56A1	OR11-75	olfactory receptor, family 56, subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_81357	chr5	100645599	100645741	+	8.98595	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-406681	NM_175052	7903	Hs.308628	NM_005668	HPRD:03970	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_81541	chr5	111539145	111539249	+	8.98595	NA	intron (NM_022140, intron 15 of 22)	intron (NM_022140, intron 15 of 22)	-24783	NR_110559	101927023	Hs.571002	NR_110559		LOC101927023	-	uncharacterized LOC101927023	ncRNA
19-PTNLD28-TUMOR_peak_26568	chr12	118312747	118312913	+	8.98595	NA	intron (NM_173598, intron 1 of 19)	intron (NM_173598, intron 1 of 19)	93198	NM_173598	283455	Hs.375836	NM_173598	HPRD:13952	KSR2	-	kinase suppressor of ras 2	protein-coding
19-PTNLD28-TUMOR_peak_12734	chr10	30703077	30703227	+	8.98595	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-19798	NM_001244134	1326	Hs.432453	NM_005204	HPRD:01863	MAP3K8	COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_78103	chr4	175749989	175750153	+	8.98595	NA	5' UTR (NM_006529, exon 1 of 10)	5' UTR (NM_006529, exon 1 of 10)	395	NM_001042543	8001	Hs.413099	NM_006529	HPRD:02688	GLRA3	-	glycine receptor, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_1543	chr1	24609895	24610073	+	8.98595	NA	Intergenic	Intergenic	-35828	NM_198173	57822	Hs.657920	NM_021180	HPRD:12210	GRHL3	SOM|TFCP2L4|VWS2	grainyhead-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_4081	chr1	64696964	64697187	+	8.98595	NA	intron (NM_152489, intron 6 of 8)	intron (NM_152489, intron 6 of 8)	27585	NM_152489	148581	Hs.388746	NM_152489	HPRD:14599	UBE2U	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding
19-PTNLD28-TUMOR_peak_25750	chr12	98614489	98614739	+	8.98595	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-225388	NR_036189	100422924		NR_036189	miRBase:MI0015834	MIR4303	-	microRNA 4303	ncRNA
19-PTNLD28-TUMOR_peak_71473	chr3	143991729	143991881	+	8.98595	NA	Intergenic	Intergenic	299638	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_13668	chr10	54577836	54577959	+	8.98595	NA	Intergenic	Intergenic	-46437	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_77425	chr4	146155400	146155502	+	8.98595	NA	Intergenic	Intergenic	-54619	NM_001102653	54726	Hs.270851	NM_017493	HPRD:11033	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
19-PTNLD28-TUMOR_peak_34108	chr15	67236125	67236273	+	8.98595	NA	Intergenic	Intergenic	-121996	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_20882	chr11	102753500	102753659	+	8.98595	NA	Intergenic	Intergenic	-7815	NM_002426	4321	Hs.1695	NM_002426		MMP12	HME|ME|MME|MMP-12	matrix metallopeptidase 12 (macrophage elastase)	protein-coding
19-PTNLD28-TUMOR_peak_109512	chrX	133119710	133120013	+	8.98595	NA	promoter-TSS (NM_004484)	promoter-TSS (NM_004484)	-188	NM_001164618	2719	Hs.644108	NM_004484	HPRD:02074	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
19-PTNLD28-TUMOR_peak_102140	chr9	7653272	7653657	+	8.98595	NA	Intergenic	Intergenic	146335	NM_033428	90871	Hs.7517	NM_033428	HPRD:12939	TMEM261	C9orf123	transmembrane protein 261	protein-coding
19-PTNLD28-TUMOR_peak_30177	chr14	50346453	50346649	+	8.98595	NA	Intergenic	L1MDa|LINE|L1	-13185	NM_001663	382	Hs.525330	NM_001663		ARF6	-	ADP-ribosylation factor 6	protein-coding
19-PTNLD28-TUMOR_peak_23778	chr12	39436897	39437036	+	8.98595	NA	Intergenic	Intergenic	-137546	NM_153634	144402	Hs.40910	NM_153634	HPRD:16747	CPNE8	-	copine VIII	protein-coding
19-PTNLD28-TUMOR_peak_18138	chr11	37592945	37593049	+	8.98595	NA	Intergenic	L2|LINE|L2	-973168	NM_001243786	5897	Hs.714519	NM_000536	HPRD:08913	RAG2	RAG-2	recombination activating gene 2	protein-coding
19-PTNLD28-TUMOR_peak_102039	chr9	4604729	4604819	+	8.98595	NA	intron (NM_001039395, intron 9 of 10)	intron (NM_001039395, intron 9 of 10)	-57520	NM_203453	403313	Hs.107510	NM_203453	HPRD:17397	PPAPDC2	PDP1|PSDP|bA6J24.6	phosphatidic acid phosphatase type 2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_92578	chr7	51539761	51539873	+	8.98595	NA	Intergenic	Intergenic	-155302	NM_001287436	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_74539	chr4	11794854	11794970	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-364375	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_20879	chr11	102668912	102669007	+	8.98595	NA	promoter-TSS (NM_001145938)	promoter-TSS (NM_001145938)	7	NM_002421	4312	Hs.83169	NM_002421	HPRD:00384	MMP1	CLG|CLGN	matrix metallopeptidase 1 (interstitial collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_34034	chr15	65926777	65926885	+	8.98595	NA	intron (NM_001301032, intron 1 of 7)	intron (NM_001301032, intron 1 of 7)	-8412	NM_001254740	9187	Hs.173092	NM_004727	HPRD:04685	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_20691	chr11	95311029	95311141	+	8.98595	NA	Intergenic	MLT1H1-int|LTR|ERVL-MaLR	211869	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_31167	chr14	71906599	71906715	+	8.98595	NA	Intergenic	Intergenic	41603	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_462	chr1	7676487	7676627	+	8.98595	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-154772	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_93677	chr7	81233449	81233793	+	8.98595	NA	Intergenic	L2c|LINE|L2	165831	NM_001010933	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_31364	chr14	76298447	76298603	+	8.98595	NA	intron (NM_015072, intron 28 of 31)	L2c|LINE|L2	149840	NM_003239	7043	Hs.592317	NM_003239		TGFB3	ARVD|ARVD1|RNHF|TGF-beta3	transforming growth factor, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_80244	chr5	63802128	63802424	+	8.98595	NA	5' UTR (NM_001029875, exon 1 of 6)	5' UTR (NM_001029875, exon 1 of 6)	502	NM_001029875	401190	Hs.657133	NM_001029875	ENSG00000186479	RGS7BP	R7BP	regulator of G-protein signaling 7 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_69944	chr3	115082112	115082220	+	8.98595	NA	Intergenic	Intergenic	-216039	NM_015642	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_109497	chrX	132320154	132320255	+	8.98595	NA	Intergenic	Intergenic	32172	NM_016521	51270	Hs.142908	NM_016521	HPRD:06623	TFDP3	CT30|DP4|HCA661	transcription factor Dp family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_51338	chr2	16954471	16954602	+	8.98595	NA	Intergenic	Intergenic	-107402	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_76115	chr4	86669168	86669257	+	8.98595	NA	intron (NM_001025616, intron 3 of 9)	intron (NM_001025616, intron 3 of 9)	25591	NR_039656	100616349		NR_039656		MIR4451	-	microRNA 4451	ncRNA
19-PTNLD28-TUMOR_peak_85857	chr6	20877704	20877838	+	8.98595	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	343083	NM_017774	54901	Hs.657604	NM_017774	HPRD:13022	CDKAL1	-	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_83302	chr5	151283039	151283133	+	8.98595	NA	intron (NM_001146040, intron 1 of 8)	intron (NM_001146040, intron 1 of 8)	21311	NM_001292000	2741	Hs.121490	NM_000171	HPRD:00719	GLRA1	HKPX1|STHE	glycine receptor, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_46891	chr19	6138164	6138290	+	8.98595	NA	intron (NM_001289177, intron 1 of 14)	intron (NM_001289177, intron 1 of 14)	2583	NM_001289177	81616	Hs.465720	NM_030924	HPRD:09824	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
19-PTNLD28-TUMOR_peak_79631	chr5	40391885	40392075	+	8.98595	NA	Intergenic	Intergenic	-288052	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_45741	chr18	48033637	48033729	+	8.98595	NA	Intergenic	LTR88a|LTR|Gypsy?	-52801	NM_002747	5596	Hs.433728	NM_002747	HPRD:01497	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_91427	chr7	18059237	18059412	+	8.98595	NA	Intergenic	MLT1C-int|LTR|ERVL-MaLR	8162	NM_175886	221823	Hs.169284	NM_175886	HPRD:17914	PRPS1L1	PRPS1|PRPS3|PRPSL|PRS-III	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88709	chr6	89952912	89953062	+	8.98595	NA	Intergenic	MIRc|SINE|MIR	-11980	NM_001267582	2569	Hs.99927	NM_002042	HPRD:15921	GABRR1	-	gamma-aminobutyric acid (GABA) A receptor, rho 1	protein-coding
19-PTNLD28-TUMOR_peak_93718	chr7	83258844	83259181	+	8.98595	NA	intron (NM_012431, intron 1 of 16)	L1PA7|LINE|L1	11735	NM_001178129	9723	Hs.528721	NM_012431	HPRD:11545	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
19-PTNLD28-TUMOR_peak_46162	chr18	64867635	64867725	+	8.98595	NA	Intergenic	Intergenic	118859	NR_049809	100847002		NR_049809	miRBase:MI0017879	MIR5011	-	microRNA 5011	ncRNA
19-PTNLD28-TUMOR_peak_28088	chr13	45589516	45589732	+	8.98595	NA	exon (NM_018559, exon 6 of 8)	exon (NM_018559, exon 6 of 8)	25937	NM_018559	55425	Hs.731811	NM_018559	HPRD:17225	GPALPP1	KIAA1704|LSR7|bA245H20.2	GPALPP motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_10512	chr1	226746083	226746282	+	8.98595	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	9681	NM_001003665	375057	Hs.116827	NM_001003665	HPRD:16821	C1orf95	-	chromosome 1 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_69477	chr3	101655537	101655667	+	8.98595	NA	Intergenic	Intergenic	-4101	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_57287	chr2	182382546	182382645	+	8.98595	NA	intron (NM_000885, intron 17 of 27)	intron (NM_000885, intron 17 of 27)	60976	NM_000885	3676	Hs.440955	NM_000885	HPRD:01894	ITGA4	CD49D|IA4	integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_56626	chr2	161310986	161311100	+	8.98595	NA	intron (NM_016836, intron 1 of 13)	L2c|LINE|L2	39275	NM_016836	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27702	chr13	31264737	31264896	+	8.98595	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-22799	NM_001204406	241	Hs.507658	NM_001629	HPRD:04742	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
19-PTNLD28-TUMOR_peak_100912	chr8	130154752	130154845	+	8.98595	NA	Intergenic	L2b|LINE|L2	98688	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_79289	chr5	30850091	30850382	+	8.98595	NA	Intergenic	Intergenic	-343526	NM_004932	1004	Hs.124776	NM_004932	HPRD:04305	CDH6	CAD6|KCAD	cadherin 6, type 2, K-cadherin (fetal kidney)	protein-coding
19-PTNLD28-TUMOR_peak_55319	chr2	120810258	120810494	+	8.98595	NA	intron (NM_020909, intron 3 of 24)	L1MC4|LINE|L1	39591	NM_001184938	57669	Hs.369232	NM_020909	HPRD:13273	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
19-PTNLD28-TUMOR_peak_99295	chr8	81034395	81034500	+	8.98595	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	-41381	NM_001287140	7163	Hs.368433	NM_005079	HPRD:04963	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
19-PTNLD28-TUMOR_peak_45858	chr18	53924576	53924713	+	8.98595	NA	Intergenic	Intergenic	-119877	NR_040025	100505474	Hs.662191	NR_040025	ENSG00000267712	LOC100505474	-	uncharacterized LOC100505474	ncRNA
19-PTNLD28-TUMOR_peak_78447	chr4	187867924	187868037	+	8.98595	NA	Intergenic	Intergenic	-222993	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_74845	chr4	26107585	26107709	+	8.98595	NA	Intergenic	Intergenic	191833	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_24357	chr12	52774126	52774224	+	8.98595	NA	exon (NM_033045, exon 7 of 9)	exon (NM_033045, exon 7 of 9)	5242	NM_033045	3890	Hs.272336	NM_033045	HPRD:09098	KRT84	HB4|KRTHB4	keratin 84	protein-coding
19-PTNLD28-TUMOR_peak_58608	chr2	224413990	224414283	+	8.98595	NA	Intergenic	Intergenic	53081	NM_003469	7857	Hs.516726	NM_003469	HPRD:06762	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
19-PTNLD28-TUMOR_peak_9832	chr1	208021664	208021784	+	8.98595	NA	Intergenic	Intergenic	30000	NR_026817	148696	Hs.125511	NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
19-PTNLD28-TUMOR_peak_107844	chrX	25333541	25333636	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	-299523	NM_139058	170302	Hs.300304	NM_139058	HPRD:02307	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
19-PTNLD28-TUMOR_peak_531	chr1	8516533	8516655	+	8.98595	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	-32847	NM_001042682	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_20542	chr11	90815020	90815119	+	8.98595	NA	Intergenic	Intergenic	-526044	NR_039711	100616186		NR_039711	miRBase:MI0016852	MIR4490	-	microRNA 4490	ncRNA
19-PTNLD28-TUMOR_peak_109528	chrX	133810560	133810787	+	8.98595	NA	Intergenic	Intergenic	-18160	NM_021796	10761	Hs.496811	NM_021796	HPRD:02245	PLAC1	CT92|OOSP2L	placenta-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_108121	chrX	46128002	46128106	+	8.98595	NA	Intergenic	Intergenic	59055	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_92039	chr7	36673129	36673285	+	8.98595	NA	intron (NM_001177506, intron 5 of 21)	intron (NM_001177506, intron 5 of 21)	-33481	NR_046764	100874264	Hs.690994	NR_046764		AOAH-IT1	-	AOAH intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_105084	chr9	106160261	106160402	+	8.98595	NA	Intergenic	L1PB4|LINE|L1	-73016	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
19-PTNLD28-TUMOR_peak_12709	chr10	30302722	30302846	+	8.98595	NA	3' UTR (NM_020848, exon 4 of 4)	3' UTR (NM_020848, exon 4 of 4)	45704	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_108070	chrX	43535294	43535410	+	8.98595	NA	intron (NM_001270458, intron 2 of 15)	L1PA3|LINE|L1	21197	NM_001270458	4128	Hs.183109	NM_000240		MAOA	MAO-A	monoamine oxidase A	protein-coding
19-PTNLD28-TUMOR_peak_79055	chr5	15106066	15106161	+	8.98595	NA	Intergenic	Intergenic	160556	NR_109944	101929454	Hs.453273	NR_109944		LOC101929454	-	uncharacterized LOC101929454	ncRNA
19-PTNLD28-TUMOR_peak_107941	chrX	38084321	38084532	+	8.98595	NA	Intergenic	Intergenic	-4249	NM_001170750	8406	Hs.15154	NM_006307	HPRD:02175	SRPX	DRS|ETX1|HEL-S-83p|SRPX1	sushi-repeat containing protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_77406	chr4	145371795	145371913	+	8.98595	NA	Intergenic	MIR|SINE|MIR	-195294	NM_022475	64399	Hs.507991	NM_022475		HHIP	HIP	hedgehog interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_25283	chr12	71700736	71700829	+	8.98595	NA	Intergenic	L1MC4a|LINE|L1	-132768	NM_003667	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_57672	chr2	198651079	198651454	+	8.98595	NA	promoter-TSS (NM_001284358)	promoter-TSS (NM_001284358)	-230	NM_001284358	66037	Hs.169797	NM_033030	ENSG00000152430	BOLL	BOULE	boule-like RNA-binding protein	protein-coding
19-PTNLD28-TUMOR_peak_103893	chr9	77453440	77453551	+	8.98595	NA	intron (NM_001177311, intron 5 of 38)	intron (NM_001177311, intron 5 of 38)	48768	NM_001177311	140803	Hs.272225	NM_017662	HPRD:06112	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel, subfamily M, member 6	protein-coding
19-PTNLD28-TUMOR_peak_25582	chr12	93129028	93129163	+	8.98595	NA	Intergenic	Intergenic	-1170	NM_001004330	440107	Hs.591013	NM_001004330	HPRD:17004	PLEKHG7	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 7	protein-coding
19-PTNLD28-TUMOR_peak_108187	chrX	47470071	47470198	+	8.98595	NA	intron (NM_006950, intron 1 of 12)	ERV3-16A3_I-int|LTR|ERVL	9122	NM_133499	6853	Hs.225936	NM_006950	HPRD:02433	SYN1	SYN1a|SYN1b|SYNI	synapsin I	protein-coding
19-PTNLD28-TUMOR_peak_98944	chr8	60964159	60964293	+	8.98595	NA	Intergenic	Intergenic	229728	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
19-PTNLD28-TUMOR_peak_44438	chr18	7879855	7879967	+	8.98595	NA	intron (NM_001105244, intron 2 of 32)	THE1C|LTR|ERVL-MaLR	312597	NM_001105244	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_84581	chr5	180463416	180463513	+	8.98595	NA	Intergenic	Intergenic	-3761	NM_152547	153579	Hs.546502	NM_152547	HPRD:12550	BTNL9	BTN3|BTN8|VDLS1900	butyrophilin-like 9	protein-coding
19-PTNLD28-TUMOR_peak_9011	chr1	193674703	193674857	+	8.98595	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	400905	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_25812	chr12	101395384	101395580	+	8.98595	NA	intron (NM_001286616, intron 7 of 26)	MIRb|SINE|MIR	100058	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_107775	chrX	21824957	21825061	+	8.98595	NA	Intergenic	LTR90A|LTR|LTR	-32647	NM_015884	51360	Hs.443490	NM_015884	HPRD:02243	MBTPS2	BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P	membrane-bound transcription factor peptidase, site 2	protein-coding
19-PTNLD28-TUMOR_peak_14814	chr10	90692419	90692598	+	8.98595	NA	promoter-TSS (NR_125373)	promoter-TSS (NR_125373)	67	NR_125373	100132116	Hs.713690	NR_125373		ACTA2-AS1	ZXF1|uc001kfo.1	ACTA2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72502	chr3	177267029	177267149	+	8.98595	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	107380	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_68435	chr3	54277701	54277839	+	8.98595	NA	intron (NM_018398, intron 2 of 37)	intron (NM_018398, intron 2 of 37)	121077	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_1664	chr1	26545569	26545826	+	8.98595	NA	Intergenic	Intergenic	-6114	NR_110698	101928303	Hs.375067	NR_110698	ENSG00000236155	LOC101928303	-	uncharacterized LOC101928303	ncRNA
19-PTNLD28-TUMOR_peak_95507	chr7	134414679	134414815	+	8.98595	NA	Intergenic	Intergenic	-49417	NM_004342	800	Hs.490203	NM_004342	HPRD:00251	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
19-PTNLD28-TUMOR_peak_19227	chr11	64933918	64934036	+	8.98595	NA	Intergenic	AluSx3|SINE|Alu	-3730	NM_001008778	387778	Hs.450642	NM_001008778	HPRD:17367	SPDYC	RINGOC|Ringo2	speedy/RINGO cell cycle regulator family member C	protein-coding
19-PTNLD28-TUMOR_peak_105082	chr9	106063422	106063544	+	8.98595	NA	intron (NR_121578, intron 3 of 9)	LTR60|LTR|ERV1	23832	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
19-PTNLD28-TUMOR_peak_92543	chr7	50789500	50789858	+	8.98595	NA	intron (NM_001001555, intron 2 of 16)	intron (NM_001001555, intron 2 of 16)	10371	NM_001001549	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_107526	chrX	10051351	10051562	+	8.98595	NA	intron (NM_015691, intron 5 of 22)	intron (NM_015691, intron 5 of 22)	67661	NM_015691	55841	Hs.527524	NM_015691	HPRD:11136	WWC3	BM042	WWC family member 3	protein-coding
19-PTNLD28-TUMOR_peak_18124	chr11	36724315	36724413	+	8.98595	NA	Intergenic	Intergenic	-104535	NM_001243786	5897	Hs.714519	NM_000536	HPRD:08913	RAG2	RAG-2	recombination activating gene 2	protein-coding
19-PTNLD28-TUMOR_peak_89248	chr6	117710959	117711096	+	8.98595	NA	intron (NM_002944, intron 11 of 42)	intron (NM_002944, intron 11 of 42)	35991	NM_002944	6098	Hs.1041	NM_002944	HPRD:01295	ROS1	MCF3|ROS|c-ros-1	ROS proto-oncogene 1 , receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_75121	chr4	46378792	46378893	+	8.98595	NA	intron (NM_000807, intron 3 of 9)	SVA_D|Other|Other	12554	NM_001114175	2555	Hs.116250	NM_000807	HPRD:11747	GABRA2	-	gamma-aminobutyric acid (GABA) A receptor, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_72091	chr3	160131508	160131652	+	8.98595	NA	intron (NM_001002800, intron 8 of 23)	intron (NM_001002800, intron 8 of 23)	9047	NR_029525	406951		NR_029525		MIR16-2	MIRN16-2|mir-16-3	microRNA 16-2	ncRNA
19-PTNLD28-TUMOR_peak_68951	chr3	70660850	70661029	+	8.98595	NA	Intergenic	LTR12C|LTR|ERV1	453135	NM_001244813	27086	Hs.59368	NM_032682	HPRD:18518	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
19-PTNLD28-TUMOR_peak_74590	chr4	14881430	14881572	+	8.98595	NA	Intergenic	Intergenic	122168	NR_038857	441009	Hs.535004	NR_038857	ENSG00000247624	CPEB2-AS1	-	CPEB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_64172	chr22	16647245	16647334	+	8.98595	NA	Intergenic	AluY|SINE|Alu	-197485	NM_001005239	81061	Hs.554706	NM_001005239		OR11H1	OR22-1	olfactory receptor, family 11, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_10006	chr1	212964828	212964929	+	8.98595	NA	promoter-TSS (NM_001146170)	promoter-TSS (NM_001146170)	261	NM_015471	25936	Hs.497692	NM_015471	HPRD:12378	NSL1	C1orf48|MIS14	NSL1, MIS12 kinetochore complex component	protein-coding
19-PTNLD28-TUMOR_peak_53728	chr2	84858336	84858454	+	8.98595	NA	intron (NM_001370, intron 29 of 76)	MER90|LTR|ERV1	114816	NM_001370	1768	Hs.249972	NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein, axonemal, heavy chain 6	protein-coding
19-PTNLD28-TUMOR_peak_15753	chr10	115999150	115999526	+	8.98595	NA	intron (NM_001272046, intron 1 of 13)	CpG	325	NM_001272046	340706	Hs.197741	NM_198496		VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_33831	chr15	60706370	60706470	+	8.98595	NA	Intergenic	Intergenic	-16235	NM_004039	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_13232	chr10	44101816	44101978	+	8.98595	NA	promoter-TSS (NM_145312)	promoter-TSS (NM_145312)	42	NM_145312	220992	Hs.147440	NM_145312	HPRD:15800	ZNF485	-	zinc finger protein 485	protein-coding
19-PTNLD28-TUMOR_peak_91602	chr7	23301530	23301692	+	8.98595	NA	intron (NM_002510, intron 6 of 10)	intron (NM_002510, intron 6 of 10)	15295	NM_001005340	10457	Hs.190495	NM_002510	HPRD:05081	GPNMB	HGFIN|NMB	glycoprotein (transmembrane) nmb	protein-coding
19-PTNLD28-TUMOR_peak_84336	chr5	177047712	177047853	+	8.98595	NA	intron (NR_026921, intron 4 of 5)	intron (NR_026921, intron 4 of 5)	20663	NM_007255	11285	Hs.455109	NM_007255	HPRD:05060	B4GALT7	EDSP1|XGALT1|XGPT1	xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7	protein-coding
19-PTNLD28-TUMOR_peak_46247	chr18	72020549	72020643	+	8.98595	NA	exon (NM_001174123, exon 12 of 14)	exon (NM_001174123, exon 12 of 14)	37486	NM_001174123	644041	Hs.465414	NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
19-PTNLD28-TUMOR_peak_33666	chr15	56403592	56403681	+	8.98595	NA	intron (NM_022841, intron 4 of 8)	SVA_D|Other|Other	-117692	NM_006154	4734	Hs.1565	NM_006154	HPRD:03786	NEDD4	NEDD4-1|RPF1	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_56420	chr2	156328565	156328679	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	773529	NM_001260509	3760	Hs.591606	NM_002239	HPRD:03323	KCNJ3	GIRK1|KGA|KIR3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
19-PTNLD28-TUMOR_peak_56878	chr2	170321057	170321273	+	8.98595	NA	Intergenic	Intergenic	-14841	NM_152384	129880	Hs.233398	NM_152384	HPRD:10353	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
19-PTNLD28-TUMOR_peak_24886	chr12	60933500	60933704	+	8.98595	NA	Intergenic	MER57C2|LTR|ERV1	850484	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_88637	chr6	87521796	87521933	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-125160	NM_000865	3354	Hs.1611	NM_000865	HPRD:01635	HTR1E	5-HT1E	5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_17321	chr11	13456081	13456221	+	8.98595	NA	intron (NM_001297741, intron 1 of 7)	L2a|LINE|L2	5675	NM_001297742	84280	Hs.332382	NM_032320	HPRD:17045	BTBD10	GMRP-1|GMRP1	BTB (POZ) domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_31520	chr14	81763001	81763216	+	8.98595	NA	intron (NM_001256430, intron 5 of 7)	intron (NM_001256430, intron 5 of 7)	-75533	NM_201595	2957	Hs.592334	NM_015859	HPRD:02748	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA, 1, 19/37kDa	protein-coding
19-PTNLD28-TUMOR_peak_57269	chr2	181594033	181594176	+	8.98595	NA	intron (NR_104324, intron 3 of 4)	intron (NR_104324, intron 3 of 4)	37273	NR_104320	101669767		NR_104319		SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_109672	chrX	143165441	143165642	+	8.98595	NA	Intergenic	L1M4b|LINE|L1	198368	NR_121210	389898	Hs.585177	NM_001012989	HPRD:18504	UBE2NL	Li174	ubiquitin-conjugating enzyme E2N-like	protein-coding
19-PTNLD28-TUMOR_peak_97456	chr8	20044613	20044740	+	8.98595	NA	Intergenic	Intergenic	-3959	NM_003053	6570	Hs.158322	NM_003053	HPRD:01897	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 (vesicular monoamine transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_66301	chr3	5320486	5320788	+	8.98595	NA	Intergenic	L1M3a|LINE|L1	-28697	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_17179	chr11	11770395	11770486	+	8.98595	NA	Intergenic	Intergenic	34329	NR_107037	102465870		NR_107037		MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
19-PTNLD28-TUMOR_peak_5191	chr1	101103381	101103472	+	8.98595	NA	intron (NR_038914, intron 3 of 4)	L1PA3|LINE|L1	9134	NR_038914	100128787	Hs.536050	NR_038914		LINC01349	-	long intergenic non-protein coding RNA 1349	ncRNA
19-PTNLD28-TUMOR_peak_89483	chr6	132530583	132530683	+	8.98595	NA	Intergenic	L1PA16|LINE|L1	75515	NR_038981	100507254	Hs.103070	NR_038981		LINC01013	-	long intergenic non-protein coding RNA 1013	ncRNA
19-PTNLD28-TUMOR_peak_81364	chr5	101525644	101525747	+	8.98595	NA	Intergenic	L1HS|LINE|L1	106558	NM_180991	353189	Hs.127648	NM_180991	HPRD:12354	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family, member 4C1	protein-coding
19-PTNLD28-TUMOR_peak_78074	chr4	174370302	174370466	+	8.98595	NA	Intergenic	Intergenic	-49767	NM_007281	11341	Hs.7122	NM_007281		SCRG1	SCRG-1	stimulator of chondrogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_25518	chr12	89051919	89052054	+	8.98595	NA	Intergenic	Intergenic	-77736	NM_000899	4254	Hs.1048	NM_000899		KITLG	FPH2|KL-1|Kitl|MGF|SCF|SF|SHEP7	KIT ligand	protein-coding
19-PTNLD28-TUMOR_peak_45325	chr18	37228184	37228355	+	8.98595	NA	intron (NR_024391, intron 2 of 3)	L1ME1|LINE|L1	-28416	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_11540	chr1	247850580	247850727	+	8.98595	NA	Intergenic	L1HS|LINE|L1	-14310	NM_001005487	441933	Hs.553834	NM_001005487	HPRD:17680	OR13G1	OR1-37	olfactory receptor, family 13, subfamily G, member 1	protein-coding
19-PTNLD28-TUMOR_peak_86753	chr6	32668420	32668520	+	8.98595	NA	Intergenic	Intergenic	-34004	NM_001243961	3119	Hs.409934	NM_002123	HPRD:05054	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
19-PTNLD28-TUMOR_peak_108582	chrX	66150590	66150678	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-291494	NM_001199687	60401	Hs.302017	NM_021783	HPRD:02230	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_65837	chr22	44293726	44293907	+	8.98595	NA	Intergenic	Intergenic	-5923	NM_001177675	150379	Hs.248086	NM_138814	HPRD:17870	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin-like phospholipase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_42449	chr17	54897108	54897244	+	8.98595	NA	intron (NM_001085430, intron 4 of 7)	intron (NM_001085430, intron 4 of 7)	14080	NM_001085430	339210	Hs.658949	NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_102214	chr9	13963395	13963504	+	8.98595	NA	Intergenic	Intergenic	35479	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
19-PTNLD28-TUMOR_peak_75533	chr4	64398250	64398524	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	876791	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
19-PTNLD28-TUMOR_peak_88866	chr6	99652668	99652772	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	144811	NM_032511	84553	Hs.573245	NM_032511	HPRD:12866	FAXC	C6orf168|dJ273F20	failed axon connections homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_20024	chr11	74450939	74451081	+	8.98595	NA	Intergenic	Intergenic	-8783	NM_015424	25884	Hs.432379	NM_015424	HPRD:09881	CHRDL2	BNF1|CHL2|FKSG37	chordin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_73268	chr3	192424235	192424400	+	8.98595	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	21071	NM_004113	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_90992	chr7	3558314	3558490	+	8.98595	NA	intron (NM_152744, intron 1 of 44)	L1MA5A|LINE|L1	217322	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_77871	chr4	160367777	160367932	+	8.98595	NA	Intergenic	Intergenic	178856	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_30526	chr14	58252830	58252984	+	8.98595	NA	intron (NM_001206920, intron 1 of 7)	L1PA7|LINE|L1	79685	NM_001206920	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35, member F4	protein-coding
19-PTNLD28-TUMOR_peak_22975	chr12	9268544	9268783	+	8.98595	NA	promoter-TSS (NM_000014)	promoter-TSS (NM_000014)	-105	NM_000014	2	Hs.212838	NM_000014	HPRD:00072	A2M	A2MD|CPAMD5|FWP007|S863-7	alpha-2-macroglobulin	protein-coding
19-PTNLD28-TUMOR_peak_90495	chr6	166988824	166988998	+	8.98595	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	51815	NM_021135	6196	Hs.655277	NM_021135	HPRD:03403	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_76871	chr4	122589666	122589931	+	8.98595	NA	intron (NM_001154, intron 12 of 12)	intron (NM_001154, intron 12 of 12)	28349	NM_001154	308	Hs.480653	NM_001154	HPRD:00568	ANXA5	ANX5|ENX2|HEL-S-7|PP4|RPRGL3	annexin A5	protein-coding
19-PTNLD28-TUMOR_peak_32124	chr14	102626312	102626433	+	8.98595	NA	intron (NM_001242418, intron 1 of 2)	AluJr|SINE|Alu	20183	NM_001242416	91833	Hs.36859	NM_144574	HPRD:11679	WDR20	DMR	WD repeat domain 20	protein-coding
19-PTNLD28-TUMOR_peak_55019	chr2	113357745	113357856	+	8.98595	NA	Intergenic	Intergenic	15764	NM_032309	84269	Hs.375707	NM_032309	HPRD:13046	CHCHD5	C2orf9|MIC14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_9955	chr1	212125254	212125494	+	8.98595	NA	intron (NM_001199811, intron 17 of 19)	intron (NM_001199811, intron 17 of 19)	-83521	NM_016448	51514	Hs.656473	NM_016448	HPRD:17952	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_67154	chr3	23743853	23743982	+	8.98595	NA	Intergenic	Intergenic	-103467	NM_182666	7324	Hs.164853	NM_003341	HPRD:04225	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
19-PTNLD28-TUMOR_peak_68929	chr3	69640424	69640600	+	8.98595	NA	Intergenic	Intergenic	-148074	NM_198159	4286	Hs.166017	NM_000248	HPRD:01138	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_90135	chr6	154779225	154779356	+	8.98595	NA	intron (NM_173515, intron 1 of 12)	MER58A|DNA|hAT-Charlie	52463	NM_173515	154043	Hs.16064	NM_173515		CNKSR3	MAGI1	CNKSR family member 3	protein-coding
19-PTNLD28-TUMOR_peak_90263	chr6	158441406	158441674	+	8.98595	NA	intron (NM_003898, intron 2 of 26)	intron (NM_003898, intron 2 of 26)	3460	NM_001178088	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_18130	chr11	37132054	37132226	+	8.98595	NA	Intergenic	Intergenic	-512311	NM_001243786	5897	Hs.714519	NM_000536	HPRD:08913	RAG2	RAG-2	recombination activating gene 2	protein-coding
19-PTNLD28-TUMOR_peak_104092	chr9	83907369	83907531	+	8.98595	NA	Intergenic	L1PB1|LINE|L1	396146	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_98621	chr8	48282057	48282278	+	8.98595	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	108697	NM_001080394	23514	Hs.381058	NM_001080394	ENSG00000164808	SPIDR	KIAA0146	scaffolding protein involved in DNA repair	protein-coding
19-PTNLD28-TUMOR_peak_30415	chr14	55505512	55505633	+	8.98595	NA	intron (NM_199421, intron 2 of 2)	HAL1|LINE|L1	11728	NM_199421	122809	Hs.744302	NM_080867	HPRD:18084	SOCS4	SOCS7	suppressor of cytokine signaling 4	protein-coding
19-PTNLD28-TUMOR_peak_81461	chr5	107596409	107596505	+	8.98595	NA	intron (NM_001163315, intron 4 of 8)	intron (NM_001163315, intron 4 of 8)	121342	NM_001163315	64839	Hs.657225	NM_022824	HPRD:10950	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine-rich repeat protein 17	protein-coding
19-PTNLD28-TUMOR_peak_86220	chr6	27242963	27243070	+	8.98595	NA	Intergenic	tRNA-Ile-ATT|tRNA|tRNA	27514	NM_005865	10279	Hs.274407	NM_005865	HPRD:06205	PRSS16	TSSP	protease, serine, 16 (thymus)	protein-coding
19-PTNLD28-TUMOR_peak_77128	chr4	138432215	138432359	+	8.98595	NA	Intergenic	Intergenic	21365	NM_019035	54510	Hs.591691	NM_019035	HPRD:12205	PCDH18	PCDH68L	protocadherin 18	protein-coding
19-PTNLD28-TUMOR_peak_96533	chr7	153391917	153392052	+	8.98595	NA	Intergenic	AluSp|SINE|Alu	-192198	NM_001039350	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_37682	chr16	48611055	48611203	+	8.98595	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	32991	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_14746	chr10	88705562	88705660	+	8.98595	NA	intron (NM_024756, intron 1 of 6)	intron (NM_024756, intron 1 of 6)	11814	NM_024756	79812	Hs.524479	NM_024756	HPRD:10601	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_60050	chr20	18724442	18724543	+	8.98595	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	-45140	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
19-PTNLD28-TUMOR_peak_69544	chr3	106064408	106064546	+	8.98595	NA	Intergenic	Intergenic	-476590	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_68889	chr3	68866504	68866637	+	8.98595	NA	intron (NM_001005527, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	115191	NM_001005527	151647	Hs.187873	NM_182522	HPRD:08343	FAM19A4	TAFA-4|TAFA4	family with sequence similarity 19 (chemokine (C-C motif)-like), member A4	protein-coding
19-PTNLD28-TUMOR_peak_45739	chr18	47959434	47959555	+	8.98595	NA	Intergenic	MER77|LTR|ERVL	58102	NM_001039535	220134	Hs.134726	NM_145060	HPRD:12689	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_24074	chr12	49147335	49147486	+	8.98595	NA	intron (NR_029448, intron 2 of 4)	intron (NR_029448, intron 2 of 4)	18410	NR_039850	100616262		NR_039850		MIR4701	-	microRNA 4701	ncRNA
19-PTNLD28-TUMOR_peak_30393	chr14	54920867	54921050	+	8.98595	NA	Intergenic	Intergenic	-12810	NM_005776	10175	Hs.294603	NM_005776	HPRD:16730	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family AMPA receptor auxiliary protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79564	chr5	38291560	38291735	+	8.98595	NA	promoter-TSS (NR_046219)	promoter-TSS (NR_046219)	-559	NR_046219	100852408	Hs.570954	NR_046219	ENSG00000248730	EGFLAM-AS4	-	EGFLAM antisense RNA 4	ncRNA
19-PTNLD28-TUMOR_peak_83646	chr5	160214389	160214493	+	8.98595	NA	intron (NM_025153, intron 1 of 25)	intron (NM_025153, intron 1 of 25)	64778	NM_025153	23120	Hs.109358	NM_025153	HPRD:08637	ATP10B	ATPVB	ATPase, class V, type 10B	protein-coding
19-PTNLD28-TUMOR_peak_88792	chr6	91842311	91842447	+	8.98595	NA	Intergenic	Intergenic	-388999	NR_039786	100616174		NR_039786	miRBase:MI0017270	MIR4643	-	microRNA 4643	ncRNA
19-PTNLD28-TUMOR_peak_35054	chr15	86402141	86402239	+	8.98595	NA	Intergenic	Intergenic	-64001	NM_022480	64410	Hs.498371	NM_022480	HPRD:07780	KLHL25	ENC-2|ENC2	kelch-like family member 25	protein-coding
19-PTNLD28-TUMOR_peak_55492	chr2	123718713	123718823	+	8.98595	NA	Intergenic	Intergenic	-1064096	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_29159	chr13	113871118	113871251	+	8.98595	NA	intron (NM_001278513, intron 2 of 19)	intron (NM_001278513, intron 2 of 19)	7365	NM_001008895	8451	Hs.339735	NM_003589	HPRD:07218	CUL4A	-	cullin 4A	protein-coding
19-PTNLD28-TUMOR_peak_28474	chr13	74815549	74815642	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-107529	NM_007249	11278	Hs.373857	NM_007249	HPRD:06336	KLF12	AP-2rep|AP2REP	Kruppel-like factor 12	protein-coding
19-PTNLD28-TUMOR_peak_69044	chr3	72871405	72871556	+	8.98595	NA	intron (NM_018130, intron 6 of 10)	intron (NM_018130, intron 6 of 10)	26118	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_21678	chr11	121212413	121212595	+	8.98595	NA	Intergenic	L1MB1|LINE|L1	48927	NM_001024956	6309	Hs.287749	NM_006918		SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
19-PTNLD28-TUMOR_peak_99503	chr8	93779404	93779686	+	8.98595	NA	intron (NR_046114, intron 1 of 2)	HERVL-int|LTR|ERVL	18743	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
19-PTNLD28-TUMOR_peak_52066	chr2	33858474	33858606	+	8.98595	NA	Intergenic	Intergenic	-34178	NM_015475	25940	Hs.468140	NM_015475	HPRD:16808	FAM98A	-	family with sequence similarity 98, member A	protein-coding
19-PTNLD28-TUMOR_peak_81567	chr5	112214600	112214726	+	8.98595	NA	intron (NM_005669, intron 4 of 4)	intron (NM_005669, intron 4 of 4)	17778	NM_001204194	6728	Hs.637001	NM_003135		SRP19	-	signal recognition particle 19kDa	protein-coding
19-PTNLD28-TUMOR_peak_94102	chr7	97464992	97465095	+	8.98595	NA	Intergenic	Intergenic	36434	NM_001178077	440	Hs.489207	NM_001673	HPRD:00153	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
19-PTNLD28-TUMOR_peak_14445	chr10	78645697	78645862	+	8.98595	NA	3' UTR (NM_001161352, exon 28 of 28)	3' UTR (NM_001161352, exon 28 of 28)	-2023	NR_120655	101929328	Hs.664552	NR_120655		KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36216	chr16	10262134	10262287	+	8.98595	NA	intron (NM_000833, intron 3 of 13)	intron (NM_000833, intron 3 of 13)	13714	NM_001134408	2903	Hs.411472	NM_000833	HPRD:00698	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	protein-coding
19-PTNLD28-TUMOR_peak_102547	chr9	27155058	27155175	+	8.98595	NA	intron (NM_001290078, intron 1 of 20)	intron (NM_001290078, intron 1 of 20)	45977	NM_001290078	7010	Hs.89640	NM_000459	HPRD:02571	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK tyrosine kinase, endothelial	protein-coding
19-PTNLD28-TUMOR_peak_11556	chr1	248823436	248823595	+	8.98595	NA	Intergenic	LTR3B_|LTR|ERVK	-9330	NM_001001824	403239	Hs.553814	NM_001001824	HPRD:14952	OR2T27	-	olfactory receptor, family 2, subfamily T, member 27	protein-coding
19-PTNLD28-TUMOR_peak_77429	chr4	146220177	146220296	+	8.98595	NA	Intergenic	Intergenic	-119404	NM_001102653	54726	Hs.270851	NM_017493	HPRD:11033	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
19-PTNLD28-TUMOR_peak_11870	chr10	6234392	6234497	+	8.98595	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-10396	NM_004566	5209	Hs.195471	NM_004566	HPRD:05612	PFKFB3	IPFK2|PFK2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
19-PTNLD28-TUMOR_peak_51520	chr2	23368472	23368582	+	8.98595	NA	Intergenic	L1MEc|LINE|L1	-239771	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_80833	chr5	76941388	76941556	+	8.98595	NA	Intergenic	CpG	-6950	NM_032109	23440	Hs.202247	NM_032109		OTP	-	orthopedia homeobox	protein-coding
19-PTNLD28-TUMOR_peak_64862	chr22	26727043	26727203	+	8.98595	NA	intron (NM_021115, intron 9 of 16)	intron (NM_021115, intron 9 of 16)	-98157	NM_020437	57168	Hs.567547	NM_020437	HPRD:14255	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46892	chr19	6166147	6166253	+	8.98595	NA	intron (NM_001289178, intron 7 of 14)	intron (NM_001289178, intron 7 of 14)	30556	NM_001289177	81616	Hs.465720	NM_030924	HPRD:09824	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
19-PTNLD28-TUMOR_peak_18175	chr11	41555454	41555570	+	8.98595	NA	Intergenic	Intergenic	-74326	NM_020929	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_23788	chr12	40013567	40013985	+	8.98595	NA	promoter-TSS (NM_005164)	promoter-TSS (NM_005164)	67	NM_005164	225	Hs.117852	NM_005164		ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding
19-PTNLD28-TUMOR_peak_80933	chr5	79812779	79812915	+	8.98595	NA	intron (NM_205548, intron 3 of 5)	MER44B|DNA|TcMar-Tigger	29047	NM_205548	167555	Hs.338182	NM_205548	HPRD:18272	FAM151B	UNQ9217	family with sequence similarity 151, member B	protein-coding
19-PTNLD28-TUMOR_peak_105879	chr9	124236925	124237100	+	8.98595	NA	intron (NR_045211, intron 1 of 5)	intron (NR_045211, intron 1 of 5)	25294	NR_045211	2681	Hs.97469	NR_003191	ENSG00000204136	GGTA1P	GGTA|GGTA1|GLYT2|a1/3GTP	glycoprotein, alpha-galactosyltransferase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_76945	chr4	124621006	124621263	+	8.98595	NA	intron (NR_027105, intron 2 of 4)	intron (NR_027105, intron 2 of 4)	47194	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_91259	chr7	8335825	8335943	+	8.98595	NA	intron (NR_125740, intron 3 of 5)	intron (NR_125740, intron 3 of 5)	-33642	NM_004968	3382	Hs.487561	NM_004968	HPRD:00971	ICA1	ICA69|ICAp69	islet cell autoantigen 1, 69kDa	protein-coding
19-PTNLD28-TUMOR_peak_43167	chr17	67892875	67893071	+	8.98595	NA	intron (NR_109971, intron 5 of 5)	intron (NR_109971, intron 5 of 5)	-64875	NR_110874	102723487	Hs.451409	NR_110874		LINC01497	-	long intergenic non-protein coding RNA 1497	ncRNA
19-PTNLD28-TUMOR_peak_93735	chr7	83779996	83780107	+	8.98595	NA	intron (NM_006080, intron 1 of 16)	L1PA3|LINE|L1	44166	NM_006080	10371	Hs.252451	NM_006080		SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
19-PTNLD28-TUMOR_peak_18076	chr11	35836375	35836475	+	8.98595	NA	Intergenic	Intergenic	-129187	NM_174902	143458	Hs.745134	NM_174902	HPRD:14063	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_79189	chr5	18553470	18553588	+	8.98595	NA	Intergenic	LTR49-int|LTR|ERV1	-1166110	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_39576	chr17	807283	807453	+	8.98595	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	-40017	NM_001205319	64359	Hs.527989	NM_022463	HPRD:14858	NXN	NRX|TRG-4	nucleoredoxin	protein-coding
19-PTNLD28-TUMOR_peak_104385	chr9	90671926	90672064	+	8.98595	NA	Intergenic	AluJo|SINE|Alu	77905	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	SPATA31 subfamily C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_4756	chr1	89663969	89664306	+	8.98595	NA	intron (NM_052941, intron 1 of 10)	L2a|LINE|L2	496	NM_052941	115361	Hs.409925	NM_052941	HPRD:13570	GBP4	Mpa2	guanylate binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_25563	chr12	91832183	91832308	+	8.98595	NA	Intergenic	Intergenic	-255439	NM_001920	1634	Hs.156316	NM_001920	HPRD:00501	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
19-PTNLD28-TUMOR_peak_77370	chr4	143536561	143536755	+	8.98595	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	230946	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_92999	chr7	67689231	67689456	+	8.98595	NA	Intergenic	Intergenic	204103	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_20915	chr11	104313190	104313311	+	8.98595	NA	Intergenic	Intergenic	166780	NR_120585	102723895	Hs.48803	NR_120585		LOC102723895	-	uncharacterized LOC102723895	ncRNA
19-PTNLD28-TUMOR_peak_16349	chr10	134527775	134527912	+	8.98595	NA	intron (NM_005539, intron 8 of 15)	CpG	71694	NM_177400	84504	Hs.134013	NM_177400	HPRD:09336	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_69498	chr3	102434342	102434472	+	8.98595	NA	Intergenic	Intergenic	280548	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_60116	chr20	20625484	20625719	+	8.98595	NA	intron (NM_020343, intron 4 of 39)	intron (NM_020343, intron 4 of 39)	67665	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_108581	chrX	66140274	66140365	+	8.98595	NA	Intergenic	L1MB8|LINE|L1	-281179	NM_001199687	60401	Hs.302017	NM_021783	HPRD:02230	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_18543	chr11	49276719	49276949	+	8.98595	NA	Intergenic	Intergenic	-46612	NM_001193471	2346	Hs.654487	NM_004476	HPRD:02961	FOLH1	FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP	folate hydrolase (prostate-specific membrane antigen) 1	protein-coding
19-PTNLD28-TUMOR_peak_89518	chr6	134242542	134242635	+	8.98595	NA	Intergenic	LTR41|LTR|ERVL	-30720	NM_001253676	9519	Hs.486507	NM_004865		TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TBP-like 1	protein-coding
19-PTNLD28-TUMOR_peak_68729	chr3	63494108	63494341	+	8.98595	NA	intron (NM_144642, intron 2 of 4)	L2a|LINE|L2	41503	NR_046677	100874016	Hs.441275	NR_046677	ENSG00000241359	SYNPR-AS1	-	SYNPR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25619	chr12	94469206	94469297	+	8.98595	NA	Intergenic	Intergenic	-73248	NM_005761	10154	Hs.584845	NM_005761	HPRD:05036	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
19-PTNLD28-TUMOR_peak_97426	chr8	19529889	19530071	+	8.98595	NA	intron (NR_024040, intron 1 of 9)	intron (NR_024040, intron 1 of 9)	10114	NM_018371	55790	Hs.613729	NM_018371	HPRD:13114	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_66569	chr3	10958969	10959159	+	8.98595	NA	intron (NM_014229, intron 7 of 13)	L3|LINE|CR1	-75356	NM_003042	6529	Hs.443874	NM_003042	HPRD:00664	SLC6A1	GABATHG|GABATR|GAT1	solute carrier family 6 (neurotransmitter transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_39887	chr17	6130162	6130256	+	8.98595	NA	Intergenic	SVA_D|Other|Other	156275	NM_015253	23302	Hs.370166	NM_015253	HPRD:17193	WSCD1	-	WSC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_28739	chr13	96983866	96984054	+	8.98595	NA	intron (NM_153456, intron 1 of 1)	L1PA4|LINE|L1	240867	NM_153456	266722	Hs.171001	NM_153456		HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_109640	chrX	140000539	140000802	+	8.98595	NA	Intergenic	Intergenic	7714	NR_031725	100302169		NR_031725	miRBase:MI0008192	MIR320D2	MIR320D-2|MIRN320D2|hsa-mir-320d-2	microRNA 320d-2	ncRNA
19-PTNLD28-TUMOR_peak_27659	chr13	30594954	30595076	+	8.98595	NA	Intergenic	Intergenic	84347	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_64223	chr22	17934125	17934228	+	8.98595	NA	intron (NM_001290046, intron 1 of 18)	LTR10C|LTR|ERV1	-22452	NM_001290047	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	cat eye syndrome chromosome region, candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_16108	chr10	125990436	125990623	+	8.98595	NA	Intergenic	LTR16E1|LTR|ERVL	117016	NM_000274	4942	Hs.523332	NM_000274	HPRD:02021	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_8644	chr1	181552911	181553015	+	8.98595	NA	intron (NM_001205293, intron 6 of 47)	intron (NM_001205293, intron 6 of 47)	100277	NM_001205294	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_108928	chrX	95524922	95525012	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	67934	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_36228	chr16	10422254	10422354	+	8.98595	NA	Intergenic	AluJb|SINE|Alu	-57608	NM_001256160	80063	Hs.513343	NM_024997	HPRD:16517	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_108103	chrX	45641424	45641520	+	8.98595	NA	Intergenic	Intergenic	-34942	NR_029636	407007		NR_029636	miRBase:MI0000299	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
19-PTNLD28-TUMOR_peak_46817	chr19	4800924	4801088	+	8.98595	NA	Intergenic	Intergenic	9278	NM_018708	55527	Hs.515082	NM_018708	HPRD:16888	FEM1A	EPRAP	fem-1 homolog a (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_36987	chr16	27629175	27629332	+	8.98595	NA	intron (NM_015202, intron 2 of 27)	AluJr|SINE|Alu	67785	NM_015202	23247	Hs.460459	NM_015202	HPRD:13806	KIAA0556	-	KIAA0556	protein-coding
19-PTNLD28-TUMOR_peak_28136	chr13	46661293	46661431	+	8.98595	NA	intron (NM_001872, intron 2 of 10)	MER52A|LTR|ERV1	17849	NM_001872	1361	Hs.512937	NM_001872	HPRD:04374	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2 (plasma)	protein-coding
19-PTNLD28-TUMOR_peak_26549	chr12	118100578	118100675	+	8.98595	NA	intron (NM_173598, intron 5 of 19)	intron (NM_173598, intron 5 of 19)	-301019	NM_001204218	4842	Hs.654410	NM_000620	HPRD:01226	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_62866	chr21	18642647	18642765	+	8.98595	NA	Intergenic	Intergenic	-168502	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_58747	chr2	230451910	230452060	+	8.98595	NA	intron (NM_139072, intron 3 of 12)	intron (NM_139072, intron 3 of 12)	127301	NM_139072	92737	Hs.234074	NM_139072	HPRD:09531	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_41187	chr17	36058364	36058531	+	8.98595	NA	intron (NM_000458, intron 8 of 8)	intron (NM_000458, intron 8 of 8)	46649	NM_000458	6928	Hs.191144	NM_000458	HPRD:08926	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
19-PTNLD28-TUMOR_peak_30284	chr14	52445948	52446048	+	8.98595	NA	Intergenic	Intergenic	-10230	NM_016039	51637	Hs.534457	NM_016039	HPRD:16615	C14orf166	CGI99|CLE|CLE7|LCRP369|RLLM1	chromosome 14 open reading frame 166	protein-coding
19-PTNLD28-TUMOR_peak_23507	chr12	27229975	27230133	+	8.98595	NA	Intergenic	Intergenic	5401	NM_001080406	728858	Hs.334003	NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_105915	chr9	124623900	124624001	+	8.98595	NA	intron (NM_001139442, intron 7 of 8)	intron (NM_001139442, intron 7 of 8)	118886	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_98726	chr8	52697865	52698022	+	8.98595	NA	intron (NM_144651, intron 1 of 22)	intron (NM_144651, intron 1 of 22)	24062	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_81709	chr5	116679355	116679553	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	-71754	NR_046089	728342	Hs.434420	NR_046089		LINC00992	-	long intergenic non-protein coding RNA 992	ncRNA
19-PTNLD28-TUMOR_peak_75461	chr4	57998410	57998521	+	8.98595	NA	intron (NR_034081, intron 1 of 4)	intron (NR_034081, intron 1 of 4)	-21914	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_88904	chr6	101850559	101850789	+	8.98595	NA	intron (NM_021956, intron 1 of 15)	CpG	3813	NM_021956	2898	Hs.98262	NM_021956	HPRD:00692	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate receptor, ionotropic, kainate 2	protein-coding
19-PTNLD28-TUMOR_peak_23866	chr12	43621563	43621680	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	324103	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_23873	chr12	43864901	43864997	+	8.98595	NA	intron (NM_025003, intron 7 of 38)	L1PA2|LINE|L1	80775	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_109439	chrX	129271074	129271220	+	8.98595	NA	exon (NM_145813, exon 2 of 8)	exon (NM_145813, exon 2 of 8)	868	NM_001130846	9131	Hs.424932	NM_004208	HPRD:02161	AIFM1	AIF|CMT2D|CMTX4|COWCK|COXPD6|NADMR|NAMSD|PDCD8	apoptosis-inducing factor, mitochondrion-associated, 1	protein-coding
19-PTNLD28-TUMOR_peak_103663	chr9	71361995	71362100	+	8.98595	NA	intron (NM_003558, intron 2 of 15)	intron (NM_003558, intron 2 of 15)	-32917	NM_138333	116224	Hs.655572	NM_138333	HPRD:10074	FAM122A	C9orf42	family with sequence similarity 122A	protein-coding
19-PTNLD28-TUMOR_peak_99386	chr8	86167137	86167283	+	8.98595	NA	intron (NM_198584, intron 2 of 6)	intron (NM_198584, intron 2 of 6)	9494	NM_198584	377677	Hs.127189	NM_198584	HPRD:12992	CA13	CAXIII	carbonic anhydrase XIII	protein-coding
19-PTNLD28-TUMOR_peak_35084	chr15	88199666	88199889	+	8.98595	NA	Intergenic	LTR23|LTR|ERV1	79617	NR_026869	145978	Hs.350808	NM_152454	HPRD:08101	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
19-PTNLD28-TUMOR_peak_15962	chr10	121553679	121553769	+	8.98595	NA	intron (NM_014937, intron 6 of 19)	SVA_D|Other|Other	-25045	NM_001243194	22876	Hs.369755	NM_014937	HPRD:11048	INPP5F	MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
19-PTNLD28-TUMOR_peak_71491	chr3	145453615	145453724	+	8.98595	NA	Intergenic	LTR8|LTR|ERV1	425613	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_85098	chr6	6731219	6731321	+	8.98595	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-108211	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23920	chr12	45937749	45937849	+	8.98595	NA	Intergenic	Intergenic	183905	NR_028408	400027	Hs.597122	NR_028408	ENSG00000273015	LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
19-PTNLD28-TUMOR_peak_89147	chr6	112510783	112510943	+	8.98595	NA	intron (NM_001105206, intron 6 of 38)	intron (NM_001105206, intron 6 of 38)	-46934	NR_121193	101927640	Hs.510007	NR_121193		LOC101927640	-	uncharacterized LOC101927640	ncRNA
19-PTNLD28-TUMOR_peak_23416	chr12	25144528	25144715	+	8.98595	NA	Intergenic	Intergenic	5752	NM_001101339	196415	Hs.434453	NM_001101339	ENSG00000226397	C12orf77	-	chromosome 12 open reading frame 77	protein-coding
19-PTNLD28-TUMOR_peak_76684	chr4	114460714	114460858	+	8.98595	NA	intron (NM_172114, intron 6 of 17)	intron (NM_172114, intron 6 of 17)	222297	NM_172127	817	Hs.144114	NM_001221	HPRD:09653	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
19-PTNLD28-TUMOR_peak_23035	chr12	10902857	10903025	+	8.98595	NA	intron (NR_120463, intron 1 of 6)	intron (NR_120463, intron 1 of 6)	108	NR_120463	101928162	Hs.112950	NR_120463		LOC101928162	-	uncharacterized LOC101928162	ncRNA
19-PTNLD28-TUMOR_peak_65468	chr22	38361253	38361430	+	8.98595	NA	intron (NM_001301131, intron 3 of 4)	intron (NM_001301131, intron 3 of 4)	-2229	NR_106878	102465492		NR_106878		MIR6820	hsa-mir-6820	microRNA 6820	ncRNA
19-PTNLD28-TUMOR_peak_51232	chr2	13001597	13001722	+	8.98595	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	124166	NR_036072	100422986		NR_036072		MIR3125	-	microRNA 3125	ncRNA
19-PTNLD28-TUMOR_peak_38177	chr16	63317775	63317863	+	8.98595	NA	Intergenic	Intergenic	-1247080	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_17687	chr11	26042732	26042847	+	8.98595	NA	Intergenic	Intergenic	-310889	NM_031418	63982	Hs.91791	NM_031418	HPRD:15526	ANO3	C11orf25|DYT23|DYT24|TMEM16C	anoctamin 3	protein-coding
19-PTNLD28-TUMOR_peak_56157	chr2	146138183	146138474	+	8.98595	NA	Intergenic	Intergenic	712794	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_9012	chr1	193692838	193692979	+	8.98595	NA	Intergenic	L1HS|LINE|L1	419033	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_37795	chr16	51171102	51171271	+	8.98595	NA	exon (NM_001127892, exon 3 of 3)	exon (NM_001127892, exon 3 of 3)	13322	NM_001127892	6299	Hs.135787	NM_002968	HPRD:03742	SALL1	HEL-S-89|HSAL1|Sal-1|TBS|ZNF794	spalt-like transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_52831	chr2	54995151	54995255	+	8.98595	NA	intron (NM_001039753, intron 1 of 40)	intron (NM_001039753, intron 1 of 40)	43054	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
19-PTNLD28-TUMOR_peak_59954	chr20	16844743	16844956	+	8.98595	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	115851	NM_020157	56914	Hs.41119	NM_020157	HPRD:07300	OTOR	FDP|MIAL1	otoraplin	protein-coding
19-PTNLD28-TUMOR_peak_11979	chr10	10847406	10847582	+	8.98595	NA	Intergenic	MER67B|LTR|ERV1	-10617	NR_027082	207107	Hs.31562	NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_20449	chr11	86319366	86319616	+	8.98595	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	63749	NM_001014811	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_37883	chr16	54089956	54090105	+	8.98595	NA	intron (NM_001080432, intron 8 of 8)	intron (NM_001080432, intron 8 of 8)	16725	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_92395	chr7	46616452	46616821	+	8.98595	NA	Intergenic	Intergenic	-655765	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_107394	chrX	3012407	3012527	+	8.98595	NA	intron (NM_001201538, intron 7 of 10)	intron (NM_001201538, intron 7 of 10)	27627	NM_004042	416	Hs.101674	NM_004042	HPRD:02049	ARSF	ASF	arylsulfatase F	protein-coding
19-PTNLD28-TUMOR_peak_97105	chr8	10031008	10031118	+	8.98595	NA	intron (NM_001199729, intron 2 of 6)	intron (NM_001199729, intron 2 of 6)	78001	NM_001135671	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_28814	chr13	99495259	99495371	+	8.98595	NA	intron (NM_015296, intron 38 of 55)	intron (NM_015296, intron 38 of 55)	10977	NR_046663	100874096	Hs.578066	NR_046663		DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92817	chr7	63000054	63000177	+	8.98595	NA	Intergenic	L1P1|LINE|L1	-81353	NR_036246	100422917		NR_036246	miRBase:MI0015892	MIR4283-1	-	microRNA 4283-1	ncRNA
19-PTNLD28-TUMOR_peak_58177	chr2	211647175	211647288	+	8.98595	NA	Intergenic	Intergenic	164936	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_416	chr1	6964628	6964763	+	8.98595	NA	intron (NM_015215, intron 3 of 22)	AluJo|SINE|Alu	119311	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_94011	chr7	94689124	94689378	+	8.98595	NA	intron (NM_017650, intron 2 of 15)	intron (NM_017650, intron 2 of 15)	150041	NM_001166161	55607	Hs.21816	NM_017650	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	protein phosphatase 1, regulatory subunit 9A	protein-coding
19-PTNLD28-TUMOR_peak_7894	chr1	165299893	165299991	+	8.98595	NA	intron (NM_177398, intron 3 of 8)	L1MEb|LINE|L1	25536	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_33506	chr15	48851545	48851716	+	8.98595	NA	intron (NM_000138, intron 6 of 65)	intron (NM_000138, intron 6 of 65)	86355	NM_000138	2200	Hs.591133	NM_000138	HPRD:00618	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
19-PTNLD28-TUMOR_peak_75351	chr4	55084100	55084200	+	8.98595	NA	Intergenic	Intergenic	-11114	NM_006206	5156	Hs.74615	NM_006206	HPRD:01429	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	platelet-derived growth factor receptor, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_100150	chr8	114896859	114896954	+	8.98595	NA	Intergenic	LTR13A|LTR|ERVK	-447664	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_89726	chr6	141242779	141242915	+	8.98595	NA	Intergenic	Intergenic	237896	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_81287	chr5	97151061	97151194	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	310727	NR_105028	102546227	Hs.582516	NR_105028		LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA
19-PTNLD28-TUMOR_peak_67592	chr3	39138392	39138490	+	8.98595	NA	TTS (NM_020839)	TTS (NM_020839)	-10711	NM_001105513	199223	Hs.443935	NM_145755	HPRD:10254	TTC21A	STI2	tetratricopeptide repeat domain 21A	protein-coding
19-PTNLD28-TUMOR_peak_110048	chrX	154534711	154534802	+	8.98595	NA	intron (NM_001289, intron 1 of 5)	L1PA2|LINE|L1	29234	NM_001289	1193	Hs.655445	NM_001289	HPRD:02139	CLIC2	CLIC2b|MRXS32|XAP121	chloride intracellular channel 2	protein-coding
19-PTNLD28-TUMOR_peak_56699	chr2	163439020	163439112	+	8.98595	NA	intron (NM_033272, intron 2 of 15)	intron (NM_033272, intron 2 of 15)	-186380	NR_110258	101929570	Hs.470445	NR_110258	ENSG00000237750	LOC101929570	-	uncharacterized LOC101929570	ncRNA
19-PTNLD28-TUMOR_peak_63344	chr21	36361769	36361888	+	8.98595	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	49895	NR_026812	80215	Hs.672131	NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_54991	chr2	112791235	112791443	+	8.98595	NA	Intergenic	AluJb|SINE|Alu	-21461	NM_032824	84910	Hs.656298	NM_032824	HPRD:07867	TMEM87B	-	transmembrane protein 87B	protein-coding
19-PTNLD28-TUMOR_peak_65940	chr22	46105361	46105525	+	8.98595	NA	intron (NM_013236, intron 5 of 11)	L2a|LINE|L2	37765	NM_013236	25814	Hs.475125	NM_013236	HPRD:04624	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding
19-PTNLD28-TUMOR_peak_20331	chr11	79908285	79908614	+	8.98595	NA	Intergenic	LTR3B_|LTR|ERVK	565397	NR_120570	101928944	Hs.547927	NR_120570	ENSG00000255178	LOC101928944	-	uncharacterized LOC101928944	ncRNA
19-PTNLD28-TUMOR_peak_63299	chr21	35734200	35734376	+	8.98595	NA	Intergenic	Intergenic	-2035	NM_172201	9992	Hs.551521	NM_172201		KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel, Isk-related family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_107529	chrX	10383788	10383940	+	8.98595	NA	Intergenic	Intergenic	151779	NM_001193279	4281	Hs.27695	NM_000381	HPRD:02047	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
19-PTNLD28-TUMOR_peak_75381	chr4	56206551	56206701	+	8.98595	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-5762	NM_024592	79644	Hs.39311	NM_024592	HPRD:07825	SRD5A3	CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
19-PTNLD28-TUMOR_peak_107978	chrX	39817463	39817724	+	8.98595	NA	Intergenic	Intergenic	139126	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_7723	chr1	161703497	161703596	+	8.98595	NA	Intergenic	Kanga1b|DNA|TcMar-Tc2	11103	NM_001288829	127943	Hs.517422	NM_001002901	HPRD:08093	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FcRY	Fc receptor-like B	protein-coding
19-PTNLD28-TUMOR_peak_103891	chr9	77398452	77398561	+	8.98595	NA	intron (NM_001177311, intron 21 of 38)	intron (NM_001177311, intron 21 of 38)	103757	NM_001177311	140803	Hs.272225	NM_017662	HPRD:06112	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel, subfamily M, member 6	protein-coding
19-PTNLD28-TUMOR_peak_76678	chr4	114232325	114232541	+	8.98595	NA	exon (NM_001148, exon 24 of 46)	exon (NM_001148, exon 24 of 46)	158995	NR_107049	102465878		NR_107049		MIR8082	hsa-mir-8082	microRNA 8082	ncRNA
19-PTNLD28-TUMOR_peak_93028	chr7	68721691	68722028	+	8.98595	NA	Intergenic	Intergenic	340622	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_27115	chr12	127791541	127791720	+	8.98595	NA	Intergenic	Intergenic	32987	NR_110057	101927616	Hs.637827	NR_110057	ENSG00000256362	LOC101927616	-	uncharacterized LOC101927616	ncRNA
19-PTNLD28-TUMOR_peak_80920	chr5	79551637	79551742	+	8.98595	NA	intron (NM_178276, intron 1 of 12)	CpG	209	NM_001174072	256987	Hs.288232	NM_178276	HPRD:12828	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19-PTNLD28-TUMOR_peak_107790	chrX	22414697	22414864	+	8.98595	NA	intron (NR_073010, intron 4 of 5)	intron (NR_073010, intron 4 of 5)	123750	NM_152577	158506	Hs.132485	NM_152577	HPRD:06545	ZNF645	CT138|HAKAIL	zinc finger protein 645	protein-coding
19-PTNLD28-TUMOR_peak_25943	chr12	104943669	104943769	+	8.98595	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-41692	NR_037487	100500843		NR_037487		MIR3922	-	microRNA 3922	ncRNA
19-PTNLD28-TUMOR_peak_15565	chr10	111644049	111644296	+	8.98595	NA	intron (NR_030724, intron 6 of 18)	intron (NR_030724, intron 6 of 18)	39139	NM_001167604	7511	Hs.390623	NM_020383	HPRD:03899	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_93966	chr7	93251430	93251746	+	8.98595	NA	Intergenic	MER20|DNA|hAT-Charlie	-47546	NM_001164737	799	Hs.489127	NM_001742	HPRD:00239	CALCR	CRT|CT-R|CTR|CTR1	calcitonin receptor	protein-coding
19-PTNLD28-TUMOR_peak_83885	chr5	170763944	170764220	+	8.98595	NA	Intergenic	Intergenic	27794	NM_021025	30012	Hs.249125	NM_021025	HPRD:06868	TLX3	HOX11L2|RNX	T-cell leukemia homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_81260	chr5	96159642	96159785	+	8.98595	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-9865	NM_001198541	51752	Hs.666524	NM_016442	HPRD:06015	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_108063	chrX	43083905	43084007	+	8.98595	NA	intron (NR_110387, intron 5 of 5)	intron (NR_110387, intron 5 of 5)	47713	NR_110387	101927501	Hs.495998	NR_110387	ENSG00000224294	LOC101927501	-	uncharacterized LOC101927501	ncRNA
19-PTNLD28-TUMOR_peak_72237	chr3	169594776	169594931	+	8.98595	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-7130	NM_024727	79782	Hs.411295	NM_024727	HPRD:08023	LRRC31	HEL-S-293	leucine rich repeat containing 31	protein-coding
19-PTNLD28-TUMOR_peak_15782	chr10	116371540	116371673	+	8.98595	NA	intron (NM_001003407, intron 1 of 21)	intron (NM_001003407, intron 1 of 21)	46452	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_103904	chr9	77785872	77786060	+	8.98595	NA	Intergenic	MER72|LTR|ERV1	82568	NM_012383	26578	Hs.494192	NM_012383	HPRD:17808	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_56453	chr2	157313237	157313400	+	8.98595	NA	intron (NM_000408, intron 1 of 16)	intron (NM_000408, intron 1 of 16)	20418	NM_000408	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_100465	chr8	123651231	123651376	+	8.98595	NA	Intergenic	Intergenic	-142598	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_87069	chr6	36122195	36122285	+	8.98595	NA	Intergenic	L1MEf|LINE|L1	23979	NM_002754	5603	Hs.178695	NM_002754	HPRD:09113	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_100113	chr8	111230761	111230928	+	8.98595	NA	Intergenic	Intergenic	-243885	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_13868	chr10	64353909	64354048	+	8.98595	NA	intron (NM_199452, intron 1 of 6)	intron (NM_199452, intron 1 of 6)	73771	NM_199452	22891	Hs.22653	NM_014951	HPRD:06380	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
19-PTNLD28-TUMOR_peak_31989	chr14	99724660	99724992	+	8.98595	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	13224	NM_022898	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_23782	chr12	39539214	39539453	+	8.98595	NA	Intergenic	CpG	-239913	NM_153634	144402	Hs.40910	NM_153634	HPRD:16747	CPNE8	-	copine VIII	protein-coding
19-PTNLD28-TUMOR_peak_99735	chr8	101641877	101642059	+	8.98595	NA	intron (NM_152628, intron 4 of 13)	intron (NM_152628, intron 4 of 13)	19925	NM_152628	169166	Hs.567758	NM_152628	HPRD:17545	SNX31	-	sorting nexin 31	protein-coding
19-PTNLD28-TUMOR_peak_32603	chr15	24391491	24391625	+	8.98595	NA	Intergenic	MLT2B3|LTR|ERVL	23495	NR_026647	791115	Hs.560378	NR_026647	ENSG00000260551	PWRN2	NCRNA00199	Prader-Willi region non-protein coding RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_79739	chr5	43497949	43498111	+	8.98595	NA	intron (NM_198566, intron 6 of 12)	L2b|LINE|L2	-14038	NM_022483	64417	Hs.732093	NM_022483	HPRD:07965	C5orf28	-	chromosome 5 open reading frame 28	protein-coding
19-PTNLD28-TUMOR_peak_52741	chr2	50719724	50719856	+	8.98595	NA	intron (NM_001135659, intron 16 of 23)	intron (NM_001135659, intron 16 of 23)	-144896	NM_138735	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_23255	chr12	15743393	15743495	+	8.98595	NA	intron (NM_030670, intron 12 of 12)	intron (NM_030670, intron 12 of 12)	44166	NM_030668	5800	Hs.160871	NM_002848	HPRD:02784	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
19-PTNLD28-TUMOR_peak_16253	chr10	130725824	130725942	+	8.98595	NA	Intergenic	Intergenic	-539571	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_70391	chr3	124950774	124951039	+	8.98595	NA	3' UTR (NM_021964, exon 9 of 9)	3' UTR (NM_021964, exon 9 of 9)	-19297	NM_024628	84561	Hs.658514	NM_024628	HPRD:11563	SLC12A8	CCC9	solute carrier family 12, member 8	protein-coding
19-PTNLD28-TUMOR_peak_11557	chr1	248859132	248859362	+	8.98595	NA	Intergenic	MER115|DNA|hAT-Tip100	-13642	NM_001004734	401994	Hs.449973	NM_001004734	HPRD:17755	OR14I1	OR5BU1|OR5BU1P	olfactory receptor, family 14, subfamily I, member 1	protein-coding
19-PTNLD28-TUMOR_peak_32527	chr15	22456813	22456939	+	8.98595	NA	Intergenic	Intergenic	43414	NR_028067	390539	Hs.666555	NR_028067	ENSG00000259435	OR4N3P	OR15-2	olfactory receptor, family 4, subfamily N, member 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103898	chr9	77617215	77617384	+	8.98595	NA	intron (NM_152420, intron 3 of 7)	intron (NM_152420, intron 3 of 7)	26011	NM_152420	138199	Hs.567688	NM_152420	HPRD:12958	C9orf41	-	chromosome 9 open reading frame 41	protein-coding
19-PTNLD28-TUMOR_peak_25252	chr12	70996942	70997131	+	8.98595	NA	intron (NM_002837, intron 2 of 31)	intron (NM_002837, intron 2 of 31)	6588	NM_002837	5787	Hs.434375	NM_002837	HPRD:01474	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
19-PTNLD28-TUMOR_peak_31609	chr14	89687590	89687749	+	8.98595	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	195785	NM_005197	1112	Hs.434286	NM_005197	HPRD:07533	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19-PTNLD28-TUMOR_peak_51802	chr2	28258415	28258552	+	8.98595	NA	intron (NM_199193, intron 6 of 13)	intron (NM_199193, intron 6 of 13)	39249	NR_036230	100422965		NR_036230		MIR4263	-	microRNA 4263	ncRNA
19-PTNLD28-TUMOR_peak_66327	chr3	6849706	6849986	+	8.98595	NA	Intergenic	Intergenic	-2710	NR_110125	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_54273	chr2	96840403	96840501	+	8.98595	NA	Intergenic	Intergenic	-29273	NM_004418	1844	Hs.1183	NM_004418	HPRD:04348	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_107577	chrX	13138304	13138438	+	8.98595	NA	Intergenic	Intergenic	-75454	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_53365	chr2	70725296	70725467	+	8.98595	NA	intron (NM_003236, intron 2 of 5)	intron (NM_003236, intron 2 of 5)	-16609	NR_046798	100874273	Hs.682157	NR_046798		TGFA-IT1	-	TGFA intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_69322	chr3	93747419	93747551	+	8.98595	NA	promoter-TSS (NM_001001850)	promoter-TSS (NM_001001850)	-31	NM_001001850	415117	Hs.679768	NM_001001850	HPRD:14477	STX19	-	syntaxin 19	protein-coding
19-PTNLD28-TUMOR_peak_35293	chr15	92640944	92641047	+	8.98595	NA	intron (NM_013272, intron 3 of 9)	intron (NM_013272, intron 3 of 9)	244057	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_62939	chr21	23811082	23811524	+	8.98595	NA	Intergenic	Intergenic	340367	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308	long intergenic non-protein coding RNA 308	ncRNA
19-PTNLD28-TUMOR_peak_2377	chr1	36438340	36438504	+	8.98595	NA	intron (NM_177422, intron 3 of 16)	AluJb|SINE|Alu	41739	NM_177422	192669	Hs.657659	NM_024852	HPRD:09558	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
19-PTNLD28-TUMOR_peak_59252	chr2	241453412	241453536	+	8.98595	NA	intron (NM_001282771, intron 9 of 17)	intron (NM_001282771, intron 9 of 17)	43964	NM_001282780	51281	Hs.656615	NM_016552	HPRD:10646	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_90649	chr6	170200953	170201046	+	8.98595	NA	non-coding (NR_026780, exon 3 of 3)	non-coding (NR_026780, exon 3 of 3)	-2078	NR_026781	401288	Hs.556095	NM_207502	HPRD:16657	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
19-PTNLD28-TUMOR_peak_45890	chr18	55361297	55361406	+	8.98595	NA	intron (NM_005603, intron 11 of 27)	MER68|LTR|ERVL	63817	NM_001242804	100505549	Hs.660645	NM_001242804		LOC100505549	-	uncharacterized LOC100505549	protein-coding
19-PTNLD28-TUMOR_peak_82041	chr5	130474144	130474262	+	8.98595	NA	Intergenic	L1PA4|LINE|L1	26838	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20318	chr11	79571491	79571613	+	8.98595	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-419857	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_101926	chr9	935415	935650	+	8.98595	NA	intron (NM_021951, intron 4 of 4)	Tigger12c|DNA|TcMar-Tigger	-41436	NM_021240	58524	Hs.189174	NM_021240	HPRD:16827	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_71017	chr3	134553796	134554064	+	8.98595	NA	intron (NM_004441, intron 1 of 15)	intron (NM_004441, intron 1 of 15)	39831	NM_004441	2047	Hs.116092	NM_004441	HPRD:02790	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
19-PTNLD28-TUMOR_peak_110134	chrY	4859921	4860031	+	8.98595	NA	Intergenic	Intergenic	-8291	NM_032971	83259	Hs.661308	NM_032971	HPRD:11847	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_83126	chr5	149036319	149036441	+	8.98595	NA	Intergenic	Intergenic	-73435	NM_001172698	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_30109	chr14	46959513	46959655	+	8.98595	NA	intron (NR_102699, intron 2 of 2)	intron (NR_102699, intron 2 of 2)	19022	NR_102700	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
19-PTNLD28-TUMOR_peak_44358	chr18	3690132	3690269	+	8.98595	NA	intron (NM_001242766, intron 4 of 10)	AluJo|SINE|Alu	86465	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_109212	chrX	112627933	112628094	+	8.98595	NA	intron (NR_110399, intron 3 of 3)	MER5A|DNA|hAT-Charlie	342058	NR_110399	101928437	Hs.640112	NR_110399		LOC101928437	-	uncharacterized LOC101928437	ncRNA
19-PTNLD28-TUMOR_peak_75740	chr4	77095556	77095665	+	8.98595	NA	intron (NM_005506, intron 6 of 11)	intron (NM_005506, intron 6 of 11)	-25942	NM_017426	53371	Hs.430435	NM_017426	HPRD:06352	NUP54	-	nucleoporin 54kDa	protein-coding
19-PTNLD28-TUMOR_peak_51425	chr2	20133093	20133305	+	8.98595	NA	exon (NM_020779, exon 22 of 27)	exon (NM_020779, exon 22 of 27)	-31455	NM_001008237	130502	Hs.591547	NM_001008237	HPRD:17296	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
19-PTNLD28-TUMOR_peak_43149	chr17	66905269	66905557	+	8.98595	NA	intron (NM_001288986, intron 16 of 38)	MER58A|DNA|hAT-Charlie	46120	NM_001288986	10351	Hs.58351	NM_007168	HPRD:09790	ABCA8	-	ATP-binding cassette, sub-family A (ABC1), member 8	protein-coding
19-PTNLD28-TUMOR_peak_8111	chr1	169579479	169579608	+	8.98595	NA	intron (NM_003005, intron 7 of 16)	intron (NM_003005, intron 7 of 16)	19834	NM_003005	6403	Hs.73800	NM_003005	HPRD:01433	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P (granule membrane protein 140kDa, antigen CD62)	protein-coding
19-PTNLD28-TUMOR_peak_27818	chr13	35252432	35252588	+	8.98595	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-37688	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA
19-PTNLD28-TUMOR_peak_59893	chr20	14430097	14430225	+	8.98595	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	-104869	NR_104193	140848	Hs.570367	NR_104193		MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_5194	chr1	101222009	101222183	+	8.98595	NA	Intergenic	Intergenic	36900	NM_001078	7412	Hs.109225	NM_001078	HPRD:01888	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_5183	chr1	100925206	100925326	+	8.98595	NA	intron (NM_003672, intron 8 of 15)	intron (NM_003672, intron 8 of 15)	-78462	NM_022049	54112	Hs.170053	NM_022049	HPRD:16248	GPR88	STRG	G protein-coupled receptor 88	protein-coding
19-PTNLD28-TUMOR_peak_72578	chr3	179054171	179054351	+	8.98595	NA	TTS (NM_016331)	TTS (NM_016331)	-11219	NM_033540	55669	Hs.478383	NM_017927	HPRD:16344	MFN1	hfzo1|hfzo2	mitofusin 1	protein-coding
19-PTNLD28-TUMOR_peak_88657	chr6	88254085	88254287	+	8.98595	NA	intron (NM_020320, intron 7 of 19)	L2c|LINE|L2	45549	NM_020320	57038	Hs.485910	NM_020320	HPRD:15209	RARS2	ArgRS|DALRD2|PCH6|PRO1992|RARSL|dJ382I10.6	arginyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_32660	chr15	26293688	26293801	+	8.98595	NA	intron (NR_040082, intron 2 of 4)	intron (NR_040082, intron 2 of 4)	-67216	NR_038851	503519	Hs.371380	NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
19-PTNLD28-TUMOR_peak_56592	chr2	160966596	160966758	+	8.98595	NA	intron (NM_001282390, intron 12 of 13)	MIR|SINE|MIR	-47551	NM_001007267	22925	Hs.410477	NM_007366	HPRD:09222	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1, 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_27621	chr13	29517153	29517468	+	8.98595	NA	Intergenic	MIR|SINE|MIR	-81438	NM_001033602	23281	Hs.22287	NM_015233		MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated tumor suppressor candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_15796	chr10	116484194	116484390	+	8.98595	NA	Intergenic	Intergenic	-39878	NM_001003407	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40142	chr17	9095385	9095642	+	8.98595	NA	intron (NM_004822, intron 5 of 6)	L1M5|LINE|L1	-13078	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_37770	chr16	50538142	50538311	+	8.98595	NA	Intergenic	AluSx3|SINE|Alu	-44015	NM_033119	85407	Hs.187578	NM_033119		NKD1	Naked1	naked cuticle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_60086	chr20	19796309	19796459	+	8.98595	NA	Intergenic	Intergenic	-70781	NM_001242581	54453	Hs.472270	NM_018993	HPRD:15249	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
19-PTNLD28-TUMOR_peak_57095	chr2	176193904	176194057	+	8.98595	NA	Intergenic	Intergenic	-147490	NM_001190329	518	Hs.429	NM_001689		ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_4572	chr1	85049036	85049153	+	8.98595	NA	Intergenic	LTR9|LTR|ERV1	-8931	NM_004388	1486	Hs.513557	NM_004388		CTBS	CTB	chitobiase, di-N-acetyl-	protein-coding
19-PTNLD28-TUMOR_peak_52017	chr2	32212612	32212712	+	8.98595	NA	intron (NM_001137602, intron 1 of 7)	intron (NM_001137602, intron 1 of 7)	23036	NM_015955	51072	Hs.444969	NM_015955	HPRD:12814	MEMO1	C2orf4|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
19-PTNLD28-TUMOR_peak_108795	chrX	75488258	75488351	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	95533	NM_016500	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58581	chr2	223426677	223426821	+	8.98595	NA	Intergenic	Intergenic	94078	NM_005687	10056	Hs.471452	NM_005687	HPRD:09947	FARSB	FARSLB|FRSB|PheHB|PheRS	phenylalanyl-tRNA synthetase, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_93081	chr7	70664006	70664140	+	8.98595	NA	intron (NM_022479, intron 1 of 10)	intron (NM_022479, intron 1 of 10)	66550	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_52496	chr2	45145742	45145877	+	8.98595	NA	Intergenic	L2|LINE|L2	22837	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	-	SIX3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44576	chr18	10951353	10951544	+	8.98595	NA	intron (NM_022068, intron 3 of 51)	L2c|LINE|L2	197313	NM_022068	63895	Hs.436902	NM_022068	HPRD:07636	PIEZO2	C18orf30|C18orf58|DA3|DA5|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo-type mechanosensitive ion channel component 2	protein-coding
19-PTNLD28-TUMOR_peak_18528	chr11	48171860	48172017	+	8.98595	NA	intron (NM_002843, intron 18 of 24)	LTR18A|LTR|ERVL	-66424	NM_001005470	119765	Hs.553566	NM_001005470	HPRD:14960	OR4B1	OR11-106|OST208	olfactory receptor, family 4, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_24862	chr12	59964063	59964257	+	8.98595	NA	Intergenic	HERVL-int|LTR|ERVL	-25661	NM_001270622	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_57422	chr2	190371377	190371475	+	8.98595	NA	Intergenic	Intergenic	65267	NM_032168	84128	Hs.399984	NM_032168	HPRD:07775	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
19-PTNLD28-TUMOR_peak_87899	chr6	49574904	49575015	+	8.98595	NA	intron (NM_000324, intron 7 of 9)	intron (NM_000324, intron 7 of 9)	29628	NM_000324	6005	Hs.120950	NM_000324	HPRD:01582	RHAG	CD241|RH2|RH50A|Rh50|Rh50GP|SLC42A1	Rh-associated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_81601	chr5	112602048	112602207	+	8.98595	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	28485	NM_002387	4163	Hs.593171	NM_002387	HPRD:01157	MCC	MCC1	mutated in colorectal cancers	protein-coding
19-PTNLD28-TUMOR_peak_813	chr1	12027296	12027431	+	8.98595	NA	intron (NM_000302, intron 16 of 18)	intron (NM_000302, intron 16 of 18)	-12875	NM_001127660	9927	Hs.376681	NM_014874	HPRD:08495	MFN2	CMT2A|CMT2A2|CPRP1|HSG|MARF	mitofusin 2	protein-coding
19-PTNLD28-TUMOR_peak_83605	chr5	159532836	159532962	+	8.98595	NA	intron (NM_052927, intron 1 of 3)	intron (NM_052927, intron 1 of 3)	13553	NM_001130864	114825	Hs.744960	NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_93987	chr7	93906290	93906420	+	8.98595	NA	Intergenic	Intergenic	-117518	NM_000089	1278	Hs.489142	NM_000089	HPRD:00363	COL1A2	OI4	collagen, type I, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_80088	chr5	58365423	58365521	+	8.98595	NA	intron (NM_001104631, intron 5 of 14)	intron (NM_001104631, intron 5 of 14)	-30133	NM_001197222	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_25077	chr12	66622142	66622254	+	8.98595	NA	intron (NM_001142523, intron 7 of 10)	intron (NM_001142523, intron 7 of 10)	-22664	NR_106757	102465249		NR_106757		MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
19-PTNLD28-TUMOR_peak_99631	chr8	98616638	98616896	+	8.98595	NA	Intergenic	SVA_B|Other|Other	-39640	NM_178812	92140	Hs.377155	NM_178812	HPRD:17459	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
19-PTNLD28-TUMOR_peak_87405	chr6	41274119	41274265	+	8.98595	NA	Intergenic	Intergenic	-19735	NM_001242589	54210	Hs.283022	NM_018643	HPRD:05472	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
19-PTNLD28-TUMOR_peak_94837	chr7	110203338	110203479	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-527654	NM_001099658	54674	Hs.3781	NM_018334	HPRD:14321	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_60165	chr20	22549583	22549744	+	8.98595	NA	intron (NR_001558, intron 1 of 3)	CpG	9617	NR_001558	140828	Hs.9842	NR_001558	ENSG00000259974	LINC00261	C20orf56|HCCDR1|NCRNA00261|bA216C10.1|dJ788L20.2	long intergenic non-protein coding RNA 261	ncRNA
19-PTNLD28-TUMOR_peak_54400	chr2	99001632	99001778	+	8.98595	NA	intron (NM_001298, intron 5 of 7)	intron (NM_001298, intron 5 of 7)	39087	NM_001298	1261	Hs.234785	NM_001298	HPRD:02504	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_33567	chr15	51520751	51520842	+	8.98595	NA	intron (NM_000103, intron 3 of 9)	intron (NM_000103, intron 3 of 9)	-13591	NR_039863	100616369		NR_039863	miRBase:MI0017347	MIR4713	-	microRNA 4713	ncRNA
19-PTNLD28-TUMOR_peak_81833	chr5	123269741	123269842	+	8.98595	NA	Intergenic	L1HS|LINE|L1	388680	NM_004384	1456	Hs.129206	NM_004384	HPRD:05034	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
19-PTNLD28-TUMOR_peak_52551	chr2	46227893	46228006	+	8.98595	NA	intron (NM_005400, intron 6 of 14)	L1MC1|LINE|L1	-296592	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_15240	chr10	102440634	102440743	+	8.98595	NA	Intergenic	CpG	-64780	NM_003988	5076	Hs.155644	NM_000278	HPRD:01330	PAX2	PAPRS	paired box 2	protein-coding
19-PTNLD28-TUMOR_peak_11531	chr1	247553518	247553719	+	8.98595	NA	Intergenic	Intergenic	-25840	NM_001127461	114548	Hs.159483	NM_004895	HPRD:05915	NLRP3	AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|FCAS|FCU|MWS|NALP3|PYPAF1	NLR family, pyrin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_102844	chr9	35132574	35132736	+	8.98595	NA	Intergenic	AluY|SINE|Alu	-16762	NM_025182	80256	Hs.301696	NM_025182	HPRD:13869	FAM214B	KIAA1539|P1.11659_5|bA182N22.6	family with sequence similarity 214, member B	protein-coding
19-PTNLD28-TUMOR_peak_99442	chr8	87604044	87604163	+	8.98595	NA	intron (NM_019098, intron 15 of 17)	L1PA3|LINE|L1	77447	NM_003909	8895	Hs.191219	NM_003909	HPRD:05016	CPNE3	CPN3|PRO1071	copine III	protein-coding
19-PTNLD28-TUMOR_peak_28632	chr13	85451189	85451306	+	8.98595	NA	Intergenic	LTR14C|LTR|ERVK	-486491	NR_046989	100874137	Hs.742643	NR_046989	ENSG00000226317	LINC00351	-	long intergenic non-protein coding RNA 351	ncRNA
19-PTNLD28-TUMOR_peak_106517	chr9	135066429	135066557	+	8.98595	NA	intron (NM_032536, intron 2 of 7)	MIR|SINE|MIR	29159	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_61098	chr20	39597509	39597634	+	8.98595	NA	Intergenic	Intergenic	-59891	NM_003286	7150	Hs.472737	NM_003286	HPRD:00535	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
19-PTNLD28-TUMOR_peak_105278	chr9	111592690	111592834	+	8.98595	NA	Intergenic	MER110-int|LTR|ERV1	25513	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_8588	chr1	180946265	180946414	+	8.98595	NA	intron (NM_001286210, intron 5 of 5)	intron (NM_001286210, intron 5 of 5)	45918	NM_005819	10228	Hs.518417	NM_005819	HPRD:07231	STX6	-	syntaxin 6	protein-coding
19-PTNLD28-TUMOR_peak_49464	chr19	46586010	46586158	+	8.98595	NA	Intergenic	Intergenic	-5197	NR_125344	400706	Hs.630811	NR_125344		LOC400706	-	uncharacterized LOC400706	ncRNA
19-PTNLD28-TUMOR_peak_85030	chr6	5144001	5144108	+	8.98595	NA	intron (NR_104417, intron 2 of 3)	intron (NR_104417, intron 2 of 3)	4502	NR_037462	100500900		NR_037462		MIR3691	-	microRNA 3691	ncRNA
19-PTNLD28-TUMOR_peak_74727	chr4	21651413	21651523	+	8.98595	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	47850	NM_001035003	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_8888	chr1	185886940	185887080	+	8.98595	NA	intron (NM_031935, intron 6 of 106)	intron (NM_031935, intron 6 of 106)	183327	NM_031935	83872	Hs.58877	NM_031935	HPRD:06509	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
19-PTNLD28-TUMOR_peak_91665	chr7	24960983	24961228	+	8.98595	NA	intron (NM_015550, intron 1 of 22)	Tigger16b|DNA|TcMar-Tigger	-28865	NR_104112	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_91326	chr7	13805367	13805470	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	220721	NM_001163150	2115	Hs.22634	NM_004956	HPRD:02765	ETV1	ER81	ets variant 1	protein-coding
19-PTNLD28-TUMOR_peak_29107	chr13	112126970	112127098	+	8.98595	NA	Intergenic	Intergenic	154019	NM_152324	121793	Hs.210677	NM_152324	HPRD:14603	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
19-PTNLD28-TUMOR_peak_100448	chr8	122788695	122788952	+	8.98595	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-135193	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_32096	chr14	102094826	102094919	+	8.98595	NA	Intergenic	CpG	67184	NM_001362	1735	Hs.49322	NM_001362	HPRD:11867	DIO3	5DIII|D3|DIOIII|TXDI3	deiodinase, iodothyronine, type III	protein-coding
19-PTNLD28-TUMOR_peak_83661	chr5	161038483	161038657	+	8.98595	NA	Intergenic	L1PA2|LINE|L1	-63440	NM_000813	2561	Hs.303527	NM_000813	HPRD:02578	GABRB2	-	gamma-aminobutyric acid (GABA) A receptor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_74791	chr4	25204095	25204572	+	8.98595	NA	Intergenic	MER5B|DNA|hAT-Charlie	-31320	NM_018323	55300	Hs.191701	NM_018323	HPRD:15132	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_44487	chr18	9148032	9148194	+	8.98595	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	10552	NM_001204056	23253	Hs.464585	NM_015208	HPRD:12457	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
19-PTNLD28-TUMOR_peak_66043	chr22	47367082	47367301	+	8.98595	NA	intron (NR_104292, intron 10 of 13)	intron (NR_104292, intron 10 of 13)	-55253	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_85342	chr6	11356818	11356931	+	8.98595	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	25707	NM_001142393	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_72297	chr3	170717787	170717885	+	8.98595	NA	intron (NM_001278659, intron 7 of 9)	intron (NM_001278659, intron 7 of 9)	26932	NM_001278658	6514	Hs.167584	NM_000340	HPRD:00685	SLC2A2	GLUT2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_79475	chr5	35851525	35851805	+	8.98595	NA	Intergenic	Intergenic	-5312	NM_002185	3575	Hs.591742	NM_002185	HPRD:00893	IL7R	CD127|CDW127|IL-7R-alpha|IL7RA|ILRA	interleukin 7 receptor	protein-coding
19-PTNLD28-TUMOR_peak_25548	chr12	90354044	90354135	+	8.98595	NA	Intergenic	Intergenic	251357	NR_028138	338758	Hs.601766	NR_028138	ENSG00000271614	LINC00936	-	long intergenic non-protein coding RNA 936	ncRNA
19-PTNLD28-TUMOR_peak_28674	chr13	93419876	93420004	+	8.98595	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	-46073	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32258	chr14	104447119	104447234	+	8.98595	NA	intron (NM_153046, intron 7 of 35)	LTR13|LTR|ERVK	-38531	NM_001257268	647286	Hs.632325	NM_001257268	ENSG00000227729	RD3L	TDRD9-AS1|TDRD9AS1	retinal degeneration 3-like	protein-coding
19-PTNLD28-TUMOR_peak_109122	chrX	107556293	107556429	+	8.98595	NA	intron (NM_001287758, intron 2 of 45)	intron (NM_001287758, intron 2 of 45)	125299	NM_001287760	1288	Hs.145586	NM_001847	HPRD:02364	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen, type IV, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_79230	chr5	22621316	22621441	+	8.98595	NA	intron (NM_004061, intron 1 of 14)	MLT1D|LTR|ERVL-MaLR	232353	NM_004061	1010	Hs.113684	NM_004061	HPRD:11081	CDH12	CDHB	cadherin 12, type 2 (N-cadherin 2)	protein-coding
19-PTNLD28-TUMOR_peak_33325	chr15	43517770	43517882	+	8.98595	NA	Intergenic	L2b|LINE|L2	-4503	NM_000119	2038	Hs.368642	NM_000119	HPRD:01517	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
19-PTNLD28-TUMOR_peak_69254	chr3	87132101	87132203	+	8.98595	NA	Intergenic	Intergenic	-6278	NR_047469	100846978	Hs.570649	NR_047469		LINC00506	-	long intergenic non-protein coding RNA 506	ncRNA
19-PTNLD28-TUMOR_peak_83036	chr5	147266749	147266864	+	8.98595	NA	Intergenic	Intergenic	8532	NM_054023	117156	Hs.483765	NM_054023	HPRD:05940	SCGB3A2	LU103|PNSP1|UGRP1|pnSP-1	secretoglobin, family 3A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_55435	chr2	122160011	122160122	+	8.98595	NA	intron (NM_001142274, intron 26 of 37)	intron (NM_001142274, intron 26 of 37)	-117288	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_80190	chr5	61064688	61064793	+	8.98595	NA	Intergenic	L2c|LINE|L2	-33215	NR_105000	100506526	Hs.662277	NR_105000	ENSG00000251575	LOC100506526	-	uncharacterized LOC100506526	ncRNA
19-PTNLD28-TUMOR_peak_102935	chr9	36276983	36277104	+	8.98595	NA	promoter-TSS (NM_001190388)	promoter-TSS (NM_001190388)	10	NM_001128227	10020	Hs.5920	NM_005476	HPRD:04825	GNE	DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
19-PTNLD28-TUMOR_peak_76345	chr4	98825226	98825334	+	8.98595	NA	intron (NM_174952, intron 8 of 10)	L1PA3|LINE|L1	239111	NM_174952	285555	Hs.680226	NM_174952	HPRD:14650	STPG2	C4orf37	sperm-tail PG-rich repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_44361	chr18	3747622	3747764	+	8.98595	NA	intron (NM_001242764, intron 2 of 9)	intron (NM_001242764, intron 2 of 9)	97665	NM_001242766	9229	Hs.594640	NM_004746	HPRD:09260	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1|hGKAP	discs, large (Drosophila) homolog-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16932	chr11	7958244	7958424	+	8.98595	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	2733	NM_001003745	26496	Hs.381322	NM_001003745	HPRD:14881	OR10A3	HSHTPCRX12|HTPCRX12	olfactory receptor, family 10, subfamily A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_25189	chr12	69453374	69453538	+	8.98595	NA	Intergenic	L2b|LINE|L2	-96436	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_92178	chr7	42882925	42883061	+	8.98595	NA	Intergenic	Intergenic	68696	NM_001099858	79020	Hs.698120	NM_024054	HPRD:09861	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_105792	chr9	122975222	122975324	+	8.98595	NA	Intergenic	L2|LINE|L2	32055	NR_029604	406939		NR_029604	miRBase:MI0000262	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
19-PTNLD28-TUMOR_peak_108932	chrX	95793221	95793375	+	8.98595	NA	Intergenic	Intergenic	-146364	NM_007309	1730	Hs.226483	NM_006729	HPRD:02117	DIAPH2	DIA|DIA2|DRF2|POF|POF2	diaphanous-related formin 2	protein-coding
19-PTNLD28-TUMOR_peak_11975	chr10	10827708	10827905	+	8.98595	NA	intron (NR_027082, intron 3 of 3)	L1MA8|LINE|L1	9071	NR_027082	207107	Hs.31562	NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_67061	chr3	19584848	19584965	+	8.98595	NA	Intergenic	LTR41B|LTR|ERVL	-228483	NR_039954	100616291		NR_039954	miRBase:MI0017438	MIR4791	-	microRNA 4791	ncRNA
19-PTNLD28-TUMOR_peak_83644	chr5	160142179	160142272	+	8.98595	NA	intron (NM_025153, intron 3 of 25)	L1HS|LINE|L1	136994	NM_025153	23120	Hs.109358	NM_025153	HPRD:08637	ATP10B	ATPVB	ATPase, class V, type 10B	protein-coding
19-PTNLD28-TUMOR_peak_14860	chr10	92010409	92010596	+	8.98595	NA	Intergenic	L1PA3|LINE|L1	290060	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
19-PTNLD28-TUMOR_peak_12103	chr10	13492223	13492322	+	8.98595	NA	intron (NM_152751, intron 7 of 8)	intron (NM_152751, intron 7 of 8)	52704	NM_001100912	222389	Hs.498740	NM_152751	HPRD:12570	BEND7	C10orf30	BEN domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_65665	chr22	41444895	41445067	+	8.98595	NA	Intergenic	Intergenic	-43536	NR_031694	100302237		NR_031694	miRBase:MI0006428	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
19-PTNLD28-TUMOR_peak_109451	chrX	129657998	129658275	+	8.98595	NA	Intergenic	Intergenic	29221	NR_027141	55855	Hs.567120	NM_018472		FAM45B	HT011	family with sequence similarity 45, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_21075	chr11	110206244	110206372	+	8.98595	NA	Intergenic	AluJb|SINE|Alu	-38871	NM_002906	5962	Hs.263671	NM_002906	HPRD:01534	RDX	DFNB24	radixin	protein-coding
19-PTNLD28-TUMOR_peak_69262	chr3	87358916	87359034	+	8.98595	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-33238	NM_001122757	5449	Hs.591654	NM_000306	HPRD:01409	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_99096	chr8	68737154	68737294	+	8.98595	NA	Intergenic	LTR2B|LTR|ERV1	-78604	NM_020361	57094	Hs.658850	NM_020361	HPRD:09891	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
19-PTNLD28-TUMOR_peak_79543	chr5	37534101	37534302	+	8.98595	NA	intron (NM_018034, intron 9 of 17)	L1PBa|LINE|L1	154789	NM_018034	55100	Hs.213690	NM_018034		WDR70	-	WD repeat domain 70	protein-coding
19-PTNLD28-TUMOR_peak_56249	chr2	150170082	150170277	+	8.98595	NA	Intergenic	Intergenic	-16320	NM_001195685	130574	Hs.21929	NM_194317	HPRD:14676	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_45428	chr18	42439386	42439557	+	8.98595	NA	intron (NM_001130110, intron 2 of 3)	MIRb|SINE|MIR	110660	NR_036203	100422829		NR_036203	miRBase:MI0015848	MIR4319	-	microRNA 4319	ncRNA
19-PTNLD28-TUMOR_peak_23194	chr12	14093176	14093384	+	8.98595	NA	intron (NM_000834, intron 1 of 12)	intron (NM_000834, intron 1 of 12)	39742	NM_000834	2904	Hs.654430	NM_000834		GRIN2B	GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	protein-coding
19-PTNLD28-TUMOR_peak_28175	chr13	47789933	47790136	+	8.98595	NA	Intergenic	Intergenic	-318823	NM_000621	3356	Hs.72630	NM_000621	HPRD:01638	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_52055	chr2	33383651	33383797	+	8.98595	NA	intron (NM_000627, intron 1 of 29)	LTR90A|LTR|LTR	24060	NM_001166266	4052	Hs.619315	NM_000627	HPRD:01039	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_85226	chr6	8743500	8743622	+	8.98595	NA	intron (NR_038980, intron 3 of 4)	Tigger6a|DNA|TcMar-Tigger	91119	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_11582	chr10	171012	171194	+	8.98595	NA	Intergenic	MIR|SINE|MIR	-9302	NM_006624	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_67710	chr3	42141420	42141536	+	8.98595	NA	intron (NM_001265608, intron 1 of 13)	intron (NM_001265608, intron 1 of 13)	8732	NM_001265608	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_99103	chr8	69403032	69403146	+	8.98595	NA	intron (NM_001195639, intron 5 of 6)	intron (NM_001195639, intron 5 of 6)	-159363	NR_038877	286189	Hs.593427	NR_038877	ENSG00000248801	LOC286189	-	uncharacterized LOC286189	ncRNA
19-PTNLD28-TUMOR_peak_46880	chr19	6048957	6049063	+	8.98595	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	61654	NM_000635	5990	Hs.465709	NM_000635	HPRD:00824	RFX2	-	regulatory factor X, 2 (influences HLA class II expression)	protein-coding
19-PTNLD28-TUMOR_peak_73873	chr4	1858336	1858545	+	8.98480	NA	promoter-TSS (NM_012318)	promoter-TSS (NM_012318)	-466	NM_012318	3954	Hs.120165	NM_012318	HPRD:05101	LETM1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64591	chr22	22221453	22221656	+	8.98402	NA	intron (NM_002745, intron 1 of 8)	CpG	416	NM_002745	5594	Hs.431850	NM_002745	HPRD:01496	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_31997	chr14	99984869	99985069	+	8.98402	NA	intron (NM_001144995, intron 3 of 5)	intron (NM_001144995, intron 3 of 5)	37230	NM_001099402	8812	Hs.510409	NM_003858		CCNK	CPR4	cyclin K	protein-coding
19-PTNLD28-TUMOR_peak_51699	chr2	26994050	26994385	+	8.98402	NA	intron (NM_017877, intron 1 of 5)	intron (NM_017877, intron 1 of 5)	7075	NM_017877	54978	Hs.1594	NM_017877	HPRD:12808	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35, member F6	protein-coding
19-PTNLD28-TUMOR_peak_57593	chr2	196429062	196429197	+	8.98402	NA	Intergenic	Intergenic	-92403	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_90076	chr6	152085524	152085716	+	8.98402	NA	intron (NM_001122742, intron 2 of 9)	intron (NM_001122742, intron 2 of 9)	-41188	NM_001291230	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_84915	chr6	3627973	3628354	+	8.98402	NA	Intergenic	Intergenic	124083	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_35957	chr16	4165782	4165921	+	8.98402	NA	5' UTR (NM_001116, exon 1 of 11)	5' UTR (NM_001116, exon 1 of 11)	335	NM_001116	115	Hs.391860	NM_001116	HPRD:04489	ADCY9	AC9	adenylate cyclase 9	protein-coding
19-PTNLD28-TUMOR_peak_75540	chr4	65474113	65474214	+	8.98402	NA	Intergenic	Intergenic	-198985	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
19-PTNLD28-TUMOR_peak_74267	chr4	7721450	7721591	+	8.98402	NA	intron (NM_020777, intron 18 of 26)	intron (NM_020777, intron 18 of 26)	-34297	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_106353	chr9	132167462	132167591	+	8.98402	NA	Intergenic	Intergenic	68324	NR_120686	100506119	Hs.624047	NR_120685		LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
19-PTNLD28-TUMOR_peak_93795	chr7	86946182	86946454	+	8.98402	NA	Intergenic	Intergenic	28490	NR_015381	11257	Hs.274329	NM_007233	HPRD:10276	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1	TP53 target 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_63798	chr21	44253680	44253778	+	8.98348	NA	Intergenic	Intergenic	45656	NM_001260477	10785	Hs.248815	NM_018669	HPRD:09330	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
19-PTNLD28-TUMOR_peak_62532	chr20	61446878	61446981	+	8.98348	NA	Intergenic	Intergenic	-1485	NM_001853	1299	Hs.716639	NM_001853	HPRD:00374	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	collagen, type IX, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_73503	chr3	195529785	195529932	+	8.98348	NA	intron (NM_018406, intron 1 of 24)	LTR38B|LTR|ERV1	8986	NM_004532	4585	Hs.369646	NM_004532	HPRD:11829	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_34441	chr15	74222847	74223022	+	8.98348	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-2345	NR_040068	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52567	chr2	46538390	46538492	+	8.97958	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	13900	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_15342	chr10	104181135	104181313	+	8.97958	NA	exon (NM_024326, exon 2 of 4)	exon (NM_024326, exon 2 of 4)	-1533	NM_001270965	5662	Hs.154658	NM_002779	HPRD:09085	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_75851	chr4	78741685	78741783	+	8.97789	NA	Intergenic	Intergenic	-1190	NM_144571	246175	Hs.592519	NM_144571	HPRD:10841	CNOT6L	CCR4b	CCR4-NOT transcription complex, subunit 6-like	protein-coding
19-PTNLD28-TUMOR_peak_60884	chr20	36154834	36154969	+	8.97789	NA	intron (NM_001167820, intron 1 of 2)	intron (NM_001167820, intron 1 of 2)	1182	NM_001167822	10904	Hs.472651	NM_006698	HPRD:16552	BLCAP	BC10	bladder cancer associated protein	protein-coding
19-PTNLD28-TUMOR_peak_10888	chr1	232763507	232763604	+	8.97789	NA	Intergenic	Intergenic	-112312	NM_020808	57568	Hs.745009	NM_020808	HPRD:15346	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
19-PTNLD28-TUMOR_peak_37362	chr16	31488800	31489048	+	8.97533	NA	3' UTR (NM_001164719, exon 11 of 11)	3' UTR (NM_001164719, exon 11 of 11)	4398	NM_015927	7041	Hs.513530	NM_015927	HPRD:03831	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_39428	chr16	89233930	89234099	+	8.97533	NA	intron (NR_046200, intron 2 of 2)	intron (NR_046200, intron 2 of 2)	1223	NR_046200	400558	Hs.513818	NR_046200	ENSG00000205015	LOC400558	-	uncharacterized LOC400558	ncRNA
19-PTNLD28-TUMOR_peak_9436	chr1	203473865	203474037	+	8.97533	NA	intron (NM_014359, intron 7 of 7)	intron (NM_014359, intron 7 of 7)	10680	NM_014359	26254	Hs.632468	NM_014359	HPRD:05498	OPTC	OPT	opticin	protein-coding
19-PTNLD28-TUMOR_peak_43551	chr17	74381924	74382048	+	8.97533	NA	intron (NM_001142601, intron 2 of 5)	CpG-11153	697	NM_001142602	8877	Hs.68061	NM_021972	HPRD:04768	SPHK1	SPHK	sphingosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_3254	chr1	47112701	47112904	+	8.97027	NA	intron (NM_001243728, intron 6 of 8)	LTR47B|LTR|ERVL	18748	NM_001256418	64756	Hs.100874	NM_022745	HPRD:12332	ATPAF1	ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_15367	chr10	104429376	104429515	+	8.97027	NA	Intergenic	Intergenic	25193	NM_030912	81603	Hs.336810	NM_030912	HPRD:06934	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
19-PTNLD28-TUMOR_peak_3698	chr1	55505426	55505655	+	8.97027	NA	promoter-TSS (NR_110451)	promoter-TSS (NR_110451)	-355	NR_110451	255738	Hs.18844	NM_174936	HPRD:07080	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
19-PTNLD28-TUMOR_peak_101094	chr8	133893975	133894270	+	8.97027	NA	exon (NM_003235, exon 6 of 48)	exon (NM_003235, exon 6 of 48)	14917	NM_003235	7038	Hs.654591	NM_003235	HPRD:01782	TG	AITD3|TGN	thyroglobulin	protein-coding
19-PTNLD28-TUMOR_peak_39253	chr16	86653005	86653186	+	8.97027	NA	Intergenic	MER66B|LTR|ERV1	40980	NM_005250	2300	Hs.533830	NM_005250	HPRD:07219	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
19-PTNLD28-TUMOR_peak_22364	chr12	461681	461908	+	8.97027	NA	intron (NM_001042603, intron 8 of 27)	intron (NM_001042603, intron 8 of 27)	-36722	NM_001130147	84318	Hs.631656	NM_032358	HPRD:17485	CCDC77	-	coiled-coil domain containing 77	protein-coding
19-PTNLD28-TUMOR_peak_7571	chr1	160016390	160016717	+	8.97027	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	-14770	NM_145167	93183	Hs.552810	NM_145167	HPRD:15133	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding
19-PTNLD28-TUMOR_peak_59818	chr20	11283140	11283358	+	8.97027	NA	Intergenic	L2b|LINE|L2	-29218	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_31683	chr14	91580854	91581017	+	8.97027	NA	promoter-TSS (NM_001286471)	promoter-TSS (NM_001286471)	-44	NM_001102367	80017	Hs.309849	NM_024952	HPRD:16612	C14orf159	-	chromosome 14 open reading frame 159	protein-coding
19-PTNLD28-TUMOR_peak_19655	chr11	69192446	69192657	+	8.97027	NA	Intergenic	MER81|DNA|hAT-Blackjack	-107778	NR_120543	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_39652	chr17	1824443	1824673	+	8.97020	NA	Intergenic	Intergenic	91285	NM_002945	6117	Hs.461925	NM_002945	HPRD:01565	RPA1	HSSB|MST075|REPA1|RF-A|RP-A|RPA70	replication protein A1, 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_39036	chr16	83847834	83848223	+	8.97020	NA	Intergenic	Intergenic	6520	NM_001537	3281	Hs.250899	NM_001537	HPRD:05185	HSBP1	NPC-A-13	heat shock factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_36374	chr16	13011213	13011429	+	8.97020	NA	intron (NM_001145204, intron 2 of 4)	intron (NM_001145204, intron 2 of 4)	15844	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_60781	chr20	34957519	34957688	+	8.97020	NA	intron (NM_014902, intron 1 of 12)	AluSx|SINE|Alu	63358	NM_014902	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_95620	chr7	136515970	136516376	+	8.97020	NA	Intergenic	L1PA2|LINE|L1	-37226	NM_001006627	1129	Hs.535891	NM_000739	HPRD:00328	CHRM2	HM2	cholinergic receptor, muscarinic 2	protein-coding
19-PTNLD28-TUMOR_peak_35177	chr15	90590201	90590335	+	8.97020	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	45545	NM_198526	374655	Hs.459311	NM_198526	HPRD:13329	ZNF710	-	zinc finger protein 710	protein-coding
19-PTNLD28-TUMOR_peak_52327	chr2	42161231	42161527	+	8.97020	NA	promoter-TSS (NR_110263)	promoter-TSS (NR_110263)	-516	NR_110262	101929723	Hs.369330	NR_110262		LOC101929723	-	uncharacterized LOC101929723	ncRNA
19-PTNLD28-TUMOR_peak_28639	chr13	87782024	87782150	+	8.97020	NA	Intergenic	MLT2C2|LTR|ERVL	488908	NR_039722	100616182		NR_039722	miRBase:MI0016863	MIR4500	-	microRNA 4500	ncRNA
19-PTNLD28-TUMOR_peak_80395	chr5	67629606	67629775	+	8.97020	NA	Intergenic	Intergenic	41294	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_75114	chr4	44728511	44728698	+	8.97020	NA	promoter-TSS (NM_001270880)	promoter-TSS (NM_001270880)	47	NR_073094	132789	Hs.21398	NM_138335	HPRD:13594	GNPDA2	GNP2|SB52	glucosamine-6-phosphate deaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_51116	chr2	11051932	11052085	+	8.97020	NA	promoter-TSS (NM_002236)	promoter-TSS (NM_002236)	-55	NM_002236	3754	Hs.23735	NM_002236	HPRD:04808	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
19-PTNLD28-TUMOR_peak_32594	chr15	23887693	23887843	+	8.97020	NA	TTS (NM_019066)	TTS (NM_019066)	5225	NM_019066	54551	Hs.141496	NM_019066		MAGEL2	NDNL1|PWLS|nM15	MAGE-like 2	protein-coding
19-PTNLD28-TUMOR_peak_81626	chr5	113325333	113325474	+	8.97020	NA	Intergenic	Intergenic	-372613	NM_021614	3781	Hs.98280	NM_021614	HPRD:09323	KCNN2	KCa2.2|SK2|SKCA2|SKCa 2|hSK2	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
19-PTNLD28-TUMOR_peak_10224	chr1	222461475	222461674	+	8.97020	NA	Intergenic	MER54B|LTR|ERVL	259870	NM_024746	79802	Hs.665660	NM_024746	HPRD:08587	HHIPL2	KIAA1822L	HHIP-like 2	protein-coding
19-PTNLD28-TUMOR_peak_95561	chr7	135306089	135306240	+	8.97020	NA	intron (NM_015135, intron 30 of 42)	intron (NM_015135, intron 30 of 42)	-41057	NM_001130929	647087	Hs.200022	NM_001130929		C7orf73	PL-5283	chromosome 7 open reading frame 73	protein-coding
19-PTNLD28-TUMOR_peak_14196	chr10	73063037	73063238	+	8.97020	NA	TTS (NM_170744)	TTS (NM_170744)	-15873	NR_033414	55315	Hs.438419	NM_018344	HPRD:11570	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 (equilibrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_10965	chr1	234311737	234312035	+	8.97020	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-38071	NM_001300845	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_55659	chr2	130624088	130624207	+	8.97020	NA	Intergenic	AluSx|SINE|Alu	-56603	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_17413	chr11	16542476	16542584	+	8.97020	NA	Intergenic	L1PA4|LINE|L1	-44595	NM_033326	55553	Hs.368226	NM_017508	HPRD:06267	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
19-PTNLD28-TUMOR_peak_3156	chr1	45795251	45795448	+	8.96918	NA	intron (NM_001293192, intron 15 of 15)	intron (NM_001293192, intron 15 of 15)	2804	NM_032756	84842	Hs.162717	NM_032756	HPRD:17509	HPDL	4-HPPD-L|GLOXD1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding
19-PTNLD28-TUMOR_peak_99871	chr8	103742215	103742363	+	8.96918	NA	Intergenic	Intergenic	-74159	NM_005655	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_65218	chr22	33382143	33382236	+	8.96918	NA	intron (NM_001135774, intron 2 of 13)	MER91B|DNA|hAT-Tip100	20617	NM_133633	8224	Hs.608750	NM_003490	HPRD:04083	SYN3	-	synapsin III	protein-coding
19-PTNLD28-TUMOR_peak_73401	chr3	194395862	194396043	+	8.96888	NA	Intergenic	Intergenic	-2746	NM_018385	55341	Hs.744061	NM_018385	HPRD:07748	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_61759	chr20	48729219	48729865	+	8.95767	NA	intron (NR_104218, intron 1 of 3)	CpG	193	NM_001257399	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
19-PTNLD28-TUMOR_peak_19198	chr11	64683608	64683970	+	8.95767	NA	intron (NM_015104, intron 1 of 40)	intron (NM_015104, intron 1 of 40)	933	NM_015104	23130	Hs.370671	NM_015104	HPRD:17186	ATG2A	-	autophagy related 2A	protein-coding
19-PTNLD28-TUMOR_peak_60885	chr20	36155502	36155655	+	8.95767	NA	intron (NM_001167820, intron 1 of 2)	intron (NM_001167820, intron 1 of 2)	505	NM_001167822	10904	Hs.472651	NM_006698	HPRD:16552	BLCAP	BC10	bladder cancer associated protein	protein-coding
19-PTNLD28-TUMOR_peak_40408	chr17	17642199	17642530	+	8.95692	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	40479	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_19437	chr11	66651137	66651291	+	8.95692	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	24126	NM_022172	5091	Hs.89890	NM_000920	HPRD:02032	PC	PCB	pyruvate carboxylase	protein-coding
19-PTNLD28-TUMOR_peak_8786	chr1	183838954	183839131	+	8.95692	NA	intron (NM_001297671, intron 4 of 17)	MER20|DNA|hAT-Charlie	64827	NM_001297672	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
19-PTNLD28-TUMOR_peak_40407	chr17	17641736	17641877	+	8.95692	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	41037	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11697	chr10	3334952	3335103	+	8.95692	NA	Intergenic	Intergenic	-119994	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_38239	chr16	66583876	66584076	+	8.95692	NA	promoter-TSS (NM_001272050)	promoter-TSS (NM_001272050)	218	NM_001172643	7084	Hs.512619	NM_004614	HPRD:01770	TK2	MTDPS2|MTTK	thymidine kinase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_24776	chr12	57877455	57877558	+	8.95692	NA	Intergenic	L2b|LINE|L2	-3873	NM_032496	64333	Hs.437126	NM_032496	HPRD:06449	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
19-PTNLD28-TUMOR_peak_108266	chrX	48897423	48897697	+	8.95673	NA	intron (NM_006521, intron 2 of 9)	intron (NM_006521, intron 2 of 9)	3483	NM_001282142	7030	Hs.730740	NM_006521	HPRD:02439	TFE3	RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
19-PTNLD28-TUMOR_peak_15614	chr10	112257130	112257269	+	8.95463	NA	promoter-TSS (NM_004419)	promoter-TSS (NM_004419)	-426	NM_004419	1847	Hs.2128	NM_004419	HPRD:04349	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
19-PTNLD28-TUMOR_peak_62005	chr20	51691681	51691811	+	8.95463	NA	intron (NM_173485, intron 1 of 2)	Mam_R4|LINE|Dong-R4	102800	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_55649	chr2	130470111	130470253	+	8.95463	NA	Intergenic	Intergenic	-210568	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_63784	chr21	44072718	44072915	+	8.95463	NA	Intergenic	Intergenic	-1046	NM_001001571	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_54944	chr2	112096207	112096456	+	8.94925	NA	Intergenic	Intergenic	-17663	NR_039634	100616499		NR_039634	miRBase:MI0016775	MIR4435-1	-	microRNA 4435-1	ncRNA
19-PTNLD28-TUMOR_peak_49565	chr19	47628418	47628716	+	8.94925	NA	Intergenic	Intergenic	-5513	NM_005500	10055	Hs.515500	NM_005500	HPRD:18010	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_61655	chr20	47886758	47886889	+	8.94925	NA	exon (NM_021035, exon 3 of 14)	exon (NM_021035, exon 3 of 14)	-7892	NR_003606	441951	Hs.356766	NR_003604	ENSG00000177410	ZFAS1	C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1	ZNFX1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80557	chr5	71404082	71404226	+	8.94925	NA	intron (NM_005909, intron 1 of 6)	CpG	1036	NM_005909	4131	Hs.335079	NM_005909	HPRD:01139	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule-associated protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_31667	chr14	91108809	91109064	+	8.94925	NA	promoter-TSS (NR_110134)	promoter-TSS (NR_110134)	-37	NR_110134	101928909	Hs.662545	NR_110134	ENSG00000259163	LOC101928909	-	uncharacterized LOC101928909	ncRNA
19-PTNLD28-TUMOR_peak_82901	chr5	142975542	142975651	+	8.94925	NA	Intergenic	Intergenic	-83829	NR_049829	100846991		NR_049829	miRBase:MI0018176	MIR5197	-	microRNA 5197	ncRNA
19-PTNLD28-TUMOR_peak_97167	chr8	11489126	11489498	+	8.94863	NA	Intergenic	Intergenic	55268	NR_040035	83655	Hs.742430	NR_040035	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
19-PTNLD28-TUMOR_peak_11134	chr1	236247169	236247305	+	8.94863	NA	Intergenic	Intergenic	-18756	NM_002508	4811	Hs.356624	NM_002508	HPRD:00574	NID1	NID	nidogen 1	protein-coding
19-PTNLD28-TUMOR_peak_78229	chr4	184256620	184256850	+	8.94863	NA	Intergenic	Intergenic	-13156	NM_001185149	100132463	Hs.727475	NM_001185149	ENSG00000185758	CLDN24	CLDN21	claudin 24	protein-coding
19-PTNLD28-TUMOR_peak_71065	chr3	135905107	135905523	+	8.94863	NA	intron (NM_018133, intron 1 of 1)	MER1A|DNA|hAT-Charlie	7995	NM_001145417	55167	Hs.18631	NM_018133	HPRD:08550	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_64096	chr21	47415649	47415762	+	8.94863	NA	intron (NM_001848, intron 20 of 34)	intron (NM_001848, intron 20 of 34)	14042	NM_001848	1291	Hs.474053	NM_001848	HPRD:00370	COL6A1	OPLL	collagen, type VI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_81837	chr5	123460466	123460749	+	8.94863	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	313606	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_96844	chr8	494759	495045	+	8.94863	NA	promoter-TSS (NM_001256113)	promoter-TSS (NM_001256113)	-57	NM_001256113	157695	Hs.289293	NM_175075	HPRD:13740	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
19-PTNLD28-TUMOR_peak_50049	chr19	51583032	51583153	+	8.94863	NA	intron (NM_022046, intron 4 of 6)	intron (NM_022046, intron 4 of 6)	4410	NM_022046	43847	Hs.283925	NM_022046	HPRD:05844	KLK14	KLK-L6	kallikrein-related peptidase 14	protein-coding
19-PTNLD28-TUMOR_peak_32806	chr15	30459692	30459900	+	8.94863	NA	Intergenic	Intergenic	-28443	NR_026771	26082	Hs.652128	NR_026771	ENSG00000225930	DKFZP434L187	-	uncharacterized LOC26082	ncRNA
19-PTNLD28-TUMOR_peak_54679	chr2	106158193	106158303	+	8.94713	NA	Intergenic	Intergenic	68768	NR_038891	285000	Hs.737917	NR_038891		LOC285000	-	uncharacterized LOC285000	ncRNA
19-PTNLD28-TUMOR_peak_60221	chr20	23660508	23660639	+	8.94713	NA	Intergenic	L1PB4|LINE|L1	9089	NM_001899	1472	Hs.654549	NM_001899	HPRD:00462	CST4	-	cystatin S	protein-coding
19-PTNLD28-TUMOR_peak_4899	chr1	93491253	93491349	+	8.94713	NA	Intergenic	L2c|LINE|L2	-53491	NM_001164391	22823	Hs.31016	NM_007358	HPRD:14342	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_17035	chr11	9373603	9373735	+	8.94713	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-32500	NM_006391	10527	Hs.744911	NM_006391	HPRD:09280	IPO7	Imp7|RANBP7	importin 7	protein-coding
19-PTNLD28-TUMOR_peak_99611	chr8	97934378	97934553	+	8.94713	NA	intron (NM_016134, intron 4 of 7)	intron (NM_016134, intron 4 of 7)	277010	NM_016134	10404	Hs.156178	NM_016134	HPRD:07140	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
19-PTNLD28-TUMOR_peak_48453	chr19	31174005	31174102	+	8.94713	NA	Intergenic	Intergenic	310725	NM_014717	9745	Hs.378901	NM_014717	HPRD:15825	ZNF536	-	zinc finger protein 536	protein-coding
19-PTNLD28-TUMOR_peak_45298	chr18	35358631	35358887	+	8.94713	NA	Intergenic	Intergenic	121661	NR_036202	100422857		NR_036202	miRBase:MI0015847	MIR4318	-	microRNA 4318	ncRNA
19-PTNLD28-TUMOR_peak_68474	chr3	55398477	55398740	+	8.94713	NA	Intergenic	Intergenic	116818	NM_001256105	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_104222	chr9	87012125	87012216	+	8.94713	NA	Intergenic	Intergenic	-28757	NM_022127	64078	Hs.535966	NM_022127	HPRD:12200	SLC28A3	CNT3	solute carrier family 28 (concentrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_75329	chr4	54431300	54431395	+	8.94713	NA	intron (NM_001126328, intron 2 of 10)	L1PA3|LINE|L1	-6911	NM_032622	84708	Hs.518760	NM_032622	HPRD:17287	LNX1	LNX|MPDZ|PDZRN2	ligand of numb-protein X 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_71358	chr3	141295474	141295564	+	8.94713	NA	intron (NM_006506, intron 14 of 23)	intron (NM_006506, intron 14 of 23)	89593	NM_006506	5922	Hs.98445	NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
19-PTNLD28-TUMOR_peak_28776	chr13	98720856	98721078	+	8.94713	NA	Intergenic	Intergenic	-73849	NM_001286839	10160	Hs.403917	NM_005766	ENSG00000152767	FARP1	CDEP|FARP1-IT1|PLEKHC2|PPP1R75	FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
19-PTNLD28-TUMOR_peak_46124	chr18	61406327	61406454	+	8.94713	NA	Intergenic	Intergenic	-13891	NM_001040147	8710	Hs.138202	NM_003784	HPRD:04524	SERPINB7	MEGSIN|PPKN|TP55	serpin peptidase inhibitor, clade B (ovalbumin), member 7	protein-coding
19-PTNLD28-TUMOR_peak_8193	chr1	172224466	172224576	+	8.94713	NA	intron (NM_001136127, intron 15 of 19)	intron (NM_001136127, intron 15 of 19)	-110546	NR_103486	100628315	Hs.584880	NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_14639	chr10	82423945	82424140	+	8.94713	NA	Intergenic	Intergenic	123467	NM_001145719	387694	Hs.147643	NM_207372	HPRD:18050	SH2D4B	-	SH2 domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_56869	chr2	169975995	169976122	+	8.94713	NA	Intergenic	Intergenic	38441	NM_001142271	10170	Hs.179608	NM_005771	HPRD:09916	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4	dehydrogenase/reductase (SDR family) member 9	protein-coding
19-PTNLD28-TUMOR_peak_22142	chr11	129960913	129961038	+	8.94713	NA	intron (NM_001243299, intron 1 of 16)	SVA_F|Other|Other	20512	NM_001243299	334	Hs.370247	NM_001642	HPRD:00103	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding
19-PTNLD28-TUMOR_peak_99534	chr8	94973263	94973412	+	8.94713	NA	Intergenic	Intergenic	44058	NM_001161781	54704	Hs.22265	NM_018444	HPRD:16185	PDP1	PDH|PDP|PDPC|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_35261	chr15	92044358	92044448	+	8.94713	NA	Intergenic	L1PA3|LINE|L1	37834	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	LOC101926928	-	uncharacterized LOC101926928	ncRNA
19-PTNLD28-TUMOR_peak_28644	chr13	88651536	88651977	+	8.94713	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-188981	NR_104059	101930749	Hs.539610	NR_104059		LINC00397	-	long intergenic non-protein coding RNA 397	ncRNA
19-PTNLD28-TUMOR_peak_67690	chr3	41346755	41346997	+	8.94713	NA	intron (NM_017886, intron 35 of 36)	SVA_D|Other|Other	105934	NM_001098209	1499	Hs.476018	NM_001904	HPRD:00286	CTNNB1	CTNNB|MRD19|armadillo	catenin (cadherin-associated protein), beta 1, 88kDa	protein-coding
19-PTNLD28-TUMOR_peak_88859	chr6	99150970	99151064	+	8.94713	NA	Intergenic	L1HS|LINE|L1	-131563	NM_005604	5454	Hs.182505	NM_005604	HPRD:02734	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_20273	chr11	78614417	78614544	+	8.94713	NA	exon (NM_001098816, exon 7 of 34)	exon (NM_001098816, exon 7 of 34)	-328571	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_28445	chr13	73534767	73534893	+	8.94713	NA	intron (NM_006346, intron 14 of 17)	intron (NM_006346, intron 14 of 17)	-94284	NM_001286818	688	Hs.508234	NM_001730	HPRD:04212	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_3493	chr1	52364063	52364185	+	8.94713	NA	Intergenic	L2c|LINE|L2	-19515	NM_001101662	4898	Hs.584782	NM_002525	HPRD:04036	NRD1	hNRD1|hNRD2	nardilysin (N-arginine dibasic convertase)	protein-coding
19-PTNLD28-TUMOR_peak_70378	chr3	124853876	124854124	+	8.94713	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	16396	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_41509	chr17	40354907	40355036	+	8.94713	NA	intron (NM_012448, intron 16 of 18)	AluSz|SINE|Alu	-8421	NM_032484	84514	Hs.38039	NM_032484	HPRD:16352	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_105103	chr9	107625577	107625778	+	8.94713	NA	intron (NM_005502, intron 5 of 49)	intron (NM_005502, intron 5 of 49)	64850	NM_005502	19	Hs.659274	NM_005502	HPRD:02501	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_56588	chr2	160853447	160853833	+	8.94713	NA	intron (NM_001007267, intron 11 of 26)	L1MCa|LINE|L1	65486	NM_001195641	22925	Hs.410477	NM_007366	HPRD:09222	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1, 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_7111	chr1	154806473	154806633	+	8.94492	NA	intron (NM_002249, intron 1 of 7)	intron (NM_002249, intron 1 of 7)	25785	NM_170782	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_90893	chr7	2282227	2282570	+	8.94492	NA	promoter-TSS (NM_013393)	promoter-TSS (NM_013393)	-142	NM_198954	4521	Hs.534331	NM_002452	HPRD:02634	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
19-PTNLD28-TUMOR_peak_64528	chr22	21561942	21562053	+	8.94262	NA	Intergenic	Intergenic	40805	NR_108107	642633		NM_201565		FAM230B	-	family with sequence similarity 230, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77062	chr4	129731211	129731332	+	8.93793	NA	5' UTR (NM_001287439, exon 1 of 11)	5' UTR (NM_001287439, exon 1 of 11)	197	NM_001287440	79960	Hs.12420	NM_024900	HPRD:10151	JADE1	PHF17	jade family PHD finger 1	protein-coding
19-PTNLD28-TUMOR_peak_49731	chr19	49141448	49141577	+	8.93537	NA	promoter-TSS (NM_001352)	promoter-TSS (NM_001352)	216	NR_004401	653677	Hs.443160	NR_004401		SEC1P	SEC1	secretory blood group 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109898	chrX	152992344	152992954	+	8.93537	NA	intron (NM_000033, intron 1 of 9)	intron (NM_000033, intron 1 of 9)	2326	NM_000033	215	Hs.159546	NM_000033	HPRD:02300	ABCD1	ABC42|ALD|ALDP|AMN	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding
19-PTNLD28-TUMOR_peak_43403	chr17	73250835	73250961	+	8.93410	NA	intron (NM_001291641, intron 1 of 17)	HERVH-int|LTR|ERV1	6844	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_108232	chrX	48433095	48433361	+	8.93202	NA	intron (NM_006743, intron 1 of 6)	CpG	487	NM_006743	5935	Hs.301404	NM_006743		RBM3	IS1-RNPL|RNPL	RNA binding motif (RNP1, RRM) protein 3	protein-coding
19-PTNLD28-TUMOR_peak_10738	chr1	229566611	229566742	+	8.93202	NA	TTS (NM_001100)	TTS (NM_001100)	3167	NM_001100	58	Hs.1288	NM_001100	HPRD:00030	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3	actin, alpha 1, skeletal muscle	protein-coding
19-PTNLD28-TUMOR_peak_38466	chr16	69140013	69140278	+	8.93202	NA	promoter-TSS (NM_138612)	promoter-TSS (NM_138612)	16	NM_138612	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_94166	chr7	98405075	98405290	+	8.93202	NA	Intergenic	Intergenic	62491	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_3877	chr1	60144497	60144726	+	8.93202	NA	intron (NM_001113411, intron 15 of 16)	intron (NM_001113411, intron 15 of 16)	54357	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_24853	chr12	59251058	59251309	+	8.93202	NA	Intergenic	HERV17-int|LTR|ERV1	62144	NM_001136051	121227	Hs.253736	NM_153377	HPRD:08317	LRIG3	LIG3	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_106061	chr9	127597157	127597283	+	8.93202	NA	Intergenic	Intergenic	-18476	NM_001276374	401551	Hs.343383	NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
19-PTNLD28-TUMOR_peak_18456	chr11	47279472	47279665	+	8.93202	NA	promoter-TSS (NM_005693)	promoter-TSS (NM_005693)	100	NM_005693	10062	Hs.438863	NM_005693	HPRD:07211	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1, group H, member 3	protein-coding
19-PTNLD28-TUMOR_peak_74313	chr4	8152556	8152653	+	8.93202	NA	intron (NM_001130085, intron 1 of 17)	intron (NM_001130085, intron 1 of 17)	7955	NM_001130083	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_19883	chr11	72387942	72388080	+	8.93202	NA	Intergenic	Intergenic	-2514	NM_002599	5138	Hs.503163	NM_002599	HPRD:04041	PDE2A	CGS-PDE|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding
19-PTNLD28-TUMOR_peak_57254	chr2	180725884	180726353	+	8.93202	NA	promoter-TSS (NR_031659)	promoter-TSS (NR_031659)	114	NM_152520	151126	Hs.655005	NM_152520	HPRD:15823	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
19-PTNLD28-TUMOR_peak_5199	chr1	101362282	101362458	+	8.92810	NA	intron (NM_133496, intron 2 of 10)	intron (NM_133496, intron 2 of 10)	736	NM_133496	148867	Hs.533903	NM_133496	HPRD:15369	SLC30A7	ZNT7|ZnT-7|ZnTL2	solute carrier family 30 (zinc transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_2624	chr1	39580973	39581129	+	8.92617	NA	intron (NM_012090, intron 1 of 92)	L2c|LINE|L2	31212	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_44884	chr18	20776197	20776572	+	8.92617	NA	intron (NR_023359, intron 3 of 6)	intron (NR_023359, intron 3 of 6)	40595	NM_138375	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_20811	chr11	100645573	100645732	+	8.92617	NA	intron (NM_152432, intron 2 of 23)	intron (NM_152432, intron 2 of 23)	87245	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_26283	chr12	111001863	111001990	+	8.92617	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	19138	NM_139283	160760	Hs.13854	NM_139283		PPTC7	TA-PP2C|TAPP2C	PTC7 protein phosphatase homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61221	chr20	42831909	42832041	+	8.92591	NA	intron (NM_016470, intron 2 of 3)	intron (NM_016470, intron 2 of 3)	7571	NM_016470	51526	Hs.75798	NM_016470	HPRD:12739	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_9686	chr1	205920382	205920541	+	8.92591	NA	Intergenic	LTR88a|LTR|Gypsy?	-7873	NM_052934	115019	Hs.164073	NM_052934	HPRD:12242	SLC26A9	-	solute carrier family 26 (anion exchanger), member 9	protein-coding
19-PTNLD28-TUMOR_peak_109933	chrX	153274123	153274250	+	8.92591	NA	Intergenic	L1MEc|LINE|L1	11156	NM_001025242	3654	Hs.522819	NM_001569	HPRD:02235	IRAK1	IRAK|pelle	interleukin-1 receptor-associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_30734	chr14	64331725	64331997	+	8.92591	NA	intron (NM_182914, intron 1 of 115)	MIR|SINE|MIR	12178	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_26858	chr12	123164214	123164351	+	8.92591	NA	Intergenic	AluJo|SINE|Alu	23622	NM_177551	338442	Hs.524812	NM_177551	HPRD:16453	HCAR2	GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g	hydroxycarboxylic acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_8789	chr1	183840356	183840455	+	8.92591	NA	intron (NM_001297671, intron 4 of 17)	intron (NM_001297671, intron 4 of 17)	66190	NM_001297672	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
19-PTNLD28-TUMOR_peak_39491	chr16	89787250	89787465	+	8.92484	NA	promoter-TSS (NM_001113525)	promoter-TSS (NM_001113525)	-36	NR_110122	92822	Hs.290154	NM_152287	HPRD:12235	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
19-PTNLD28-TUMOR_peak_45658	chr18	46523338	46523646	+	8.92273	NA	Intergenic	Intergenic	-46411	NM_001190821	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_20520	chr11	89519686	89519789	+	8.92052	NA	Intergenic	MER5A|DNA|hAT-Charlie	22006	NM_020358	57093	Hs.534218	NM_020358	HPRD:05840	TRIM49	RNF18|TRIM49A|TRIM49L2	tripartite motif containing 49	protein-coding
19-PTNLD28-TUMOR_peak_84997	chr6	4647618	4648114	+	8.92052	NA	Intergenic	Intergenic	37067	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_65256	chr22	35469017	35469282	+	8.92052	NA	intron (NM_001008494, intron 1 of 3)	MLT1F1|LTR|ERVL-MaLR	7019	NM_001008494	91464	Hs.567637	NM_001008494	HPRD:17957	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_12744	chr10	30827250	30827354	+	8.92052	NA	Intergenic	MIRb|SINE|MIR	91345	NM_183058	119180	Hs.522610	NM_183058	HPRD:14337	LYZL2	-	lysozyme-like 2	protein-coding
19-PTNLD28-TUMOR_peak_101292	chr8	138203219	138203335	+	8.92052	NA	Intergenic	MIR|SINE|MIR	222554	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_36700	chr16	20880604	20880797	+	8.92052	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-30857	NM_020424	57149	Hs.745012	NM_020424	HPRD:14254	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_24936	chr12	63187667	63187968	+	8.92052	NA	intron (NM_020700, intron 3 of 9)	intron (NM_020700, intron 3 of 9)	140848	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent, 1H	protein-coding
19-PTNLD28-TUMOR_peak_15712	chr10	115253782	115253919	+	8.92052	NA	Intergenic	Intergenic	-56740	NM_001177660	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_52530	chr2	45964411	45964569	+	8.92052	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	85447	NM_005400	5581	Hs.580351	NM_005400	HPRD:01500	PRKCE	PKCE|nPKC-epsilon	protein kinase C, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_100790	chr8	128265986	128266106	+	8.92052	NA	intron (NR_117099, intron 1 of 3)	intron (NR_117099, intron 1 of 3)	9164	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLo-2|LINC01244	cancer susceptibility candidate 21 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_38610	chr16	71495827	71496287	+	8.92052	NA	promoter-TSS (NM_145911)	promoter-TSS (NM_145911)	60	NM_145911	7571	Hs.656643	NM_145911	HPRD:01915	ZNF23	KOX16|ZNF359|ZNF612|Zfp612	zinc finger protein 23	protein-coding
19-PTNLD28-TUMOR_peak_34908	chr15	83667718	83667853	+	8.92052	NA	intron (NM_001160115, intron 3 of 4)	SVA_F|Other|Other	12608	NM_001160116	123207	Hs.352541	NM_144597	HPRD:14538	C15orf40	-	chromosome 15 open reading frame 40	protein-coding
19-PTNLD28-TUMOR_peak_43304	chr17	72292818	72293004	+	8.92052	NA	intron (NM_023036, intron 6 of 13)	L1M4|LINE|L1	22525	NM_001172810	64446	Hs.147472	NM_023036	HPRD:12019	DNAI2	CILD9|DIC2	dynein, axonemal, intermediate chain 2	protein-coding
19-PTNLD28-TUMOR_peak_1964	chr1	30664137	30664427	+	8.92052	NA	Intergenic	Intergenic	-153823	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_56850	chr2	169706255	169706383	+	8.92052	NA	intron (NM_052946, intron 7 of 14)	intron (NM_052946, intron 7 of 14)	40625	NM_020675	57405	Hs.421956	NM_020675	HPRD:15465	SPC25	SPBC25|hSpc25	SPC25, NDC80 kinetochore complex component	protein-coding
19-PTNLD28-TUMOR_peak_70883	chr3	132484906	132485048	+	8.92052	NA	intron (NR_002811, intron 3 of 10)	L1PA2|LINE|L1	-43674	NR_037804	100532724	Hs.511991	NR_037804		NPHP3-ACAD11	-	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
19-PTNLD28-TUMOR_peak_46953	chr19	7254702	7254903	+	8.92052	NA	intron (NM_001079817, intron 2 of 20)	intron (NM_001079817, intron 2 of 20)	39209	NM_001079817	3643	Hs.465744	NM_000208	HPRD:00975	INSR	CD220|HHF5	insulin receptor	protein-coding
19-PTNLD28-TUMOR_peak_108110	chrX	45708760	45708885	+	8.92052	NA	non-coding (NR_125365, exon 2 of 3)	non-coding (NR_125365, exon 2 of 3)	2098	NR_125365	401585	Hs.633348	NR_125365		LOC401585	-	uncharacterized LOC401585	ncRNA
19-PTNLD28-TUMOR_peak_88163	chr6	58180249	58180488	+	8.92052	NA	Intergenic	CpG	107356	NR_125729	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	glucuronidase, beta pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_51140	chr2	11483750	11484032	+	8.92052	NA	intron (NM_004850, intron 1 of 32)	intron (NM_004850, intron 1 of 32)	820	NM_004850	9475	Hs.681743	NM_004850	HPRD:04922	ROCK2	ROCK-II	Rho-associated, coiled-coil containing protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_16212	chr10	128365064	128365167	+	8.92052	NA	Intergenic	L1PA3|LINE|L1	-155105	NM_001004298	118611	Hs.587663	NM_001004298	HPRD:16587	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
19-PTNLD28-TUMOR_peak_16782	chr11	3886827	3887187	+	8.92052	NA	intron (NM_001277962, intron 1 of 12)	intron (NM_001277962, intron 1 of 12)	9715	NR_039835	100616453		NR_039835	miRBase:MI0017319	MIR4687	-	microRNA 4687	ncRNA
19-PTNLD28-TUMOR_peak_47193	chr19	10381120	10381287	+	8.91903	NA	promoter-TSS (NM_000201)	promoter-TSS (NM_000201)	-314	NM_000201	3383	Hs.643447	NM_000201	HPRD:00996	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_42240	chr17	48504364	48504506	+	8.91806	NA	intron (NM_001288968, intron 2 of 16)	intron (NM_001288968, intron 2 of 16)	916	NM_001288969	80221	Hs.288959	NM_025149	HPRD:13380	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_6774	chr1	151431543	151431708	+	8.91633	NA	intron (NM_001194937, intron 1 of 18)	CpG	316	NM_015100	23126	Hs.489873	NM_015100	HPRD:11445	POGZ	ZNF280E|ZNF635|ZNF635m	pogo transposable element with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_42936	chr17	63051858	63052066	+	8.91633	NA	promoter-TSS (NM_001282425)	promoter-TSS (NM_001282425)	-70	NM_001282425	10672	Hs.515018	NM_006572	HPRD:05100	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
19-PTNLD28-TUMOR_peak_66767	chr3	13718226	13718447	+	8.91633	NA	intron (NR_027103, intron 1 of 5)	L3|LINE|CR1	26115	NR_027103	285375	Hs.319969	NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
19-PTNLD28-TUMOR_peak_44431	chr18	7568161	7568359	+	8.91633	NA	intron (NM_001105244, intron 1 of 32)	CpG	946	NM_001105244	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_28370	chr13	57719774	57719923	+	8.91520	NA	Intergenic	L1MC3|LINE|L1	-1774	NM_001130405	729240	Hs.525056	NM_001130405	ENSG00000229665	PRR20C	-	proline rich 20C	protein-coding
19-PTNLD28-TUMOR_peak_53314	chr2	69941864	69942054	+	8.91520	NA	Intergenic	Intergenic	-27168	NM_001153	307	Hs.422986	NM_001153	HPRD:00112	ANXA4	ANX4|HEL-S-274|PIG28|ZAP36	annexin A4	protein-coding
19-PTNLD28-TUMOR_peak_49953	chr19	50871956	50872337	+	8.91520	NA	Intergenic	Intergenic	-3215	NM_004851	9476	Hs.512843	NM_004851	HPRD:07064	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
19-PTNLD28-TUMOR_peak_80364	chr5	67076285	67076468	+	8.91520	NA	Intergenic	L1PA3|LINE|L1	-409328	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_48612	chr19	34895580	34895902	+	8.91520	NA	intron (NM_032346, intron 2 of 6)	CpG-13481	438	NM_032346	84306	Hs.515344	NM_032346	HPRD:17480	PDCD2L	-	programmed cell death 2-like	protein-coding
19-PTNLD28-TUMOR_peak_18230	chr11	44115952	44116062	+	8.91520	NA	Intergenic	Intergenic	-1092	NM_001178083	2132	Hs.368404	NM_000401	HPRD:00599	EXT2	SOTV	exostosin glycosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_106059	chr9	127574839	127574970	+	8.91520	NA	3' UTR (NM_182487, exon 8 of 8)	3' UTR (NM_182487, exon 8 of 8)	11751	NM_001282715	169611	Hs.357004	NM_182487	HPRD:14876	OLFML2A	PRO34319	olfactomedin-like 2A	protein-coding
19-PTNLD28-TUMOR_peak_60526	chr20	31366281	31366495	+	8.91520	NA	intron (NM_006892, intron 1 of 22)	intron (NM_006892, intron 1 of 22)	-1270	NM_175850	1789	Hs.643024	NM_006892	HPRD:04209	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA (cytosine-5-)-methyltransferase 3 beta	protein-coding
19-PTNLD28-TUMOR_peak_61083	chr20	39261367	39261521	+	8.91520	NA	Intergenic	LTR33A|LTR|ERVL	56436	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_9923	chr1	211432618	211432814	+	8.91520	NA	promoter-TSS (NM_001136223)	promoter-TSS (NM_001136223)	8	NM_001136225	55758	Hs.356399	NM_018254	HPRD:08338	RCOR3	-	REST corepressor 3	protein-coding
19-PTNLD28-TUMOR_peak_78796	chr5	8458175	8458304	+	8.91178	NA	promoter-TSS (NR_039984)	promoter-TSS (NR_039984)	439	NR_039989	100505738	Hs.42197	NR_039989	ENSG00000247516	MIR4458HG	-	MIR4458 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_73265	chr3	192234014	192234214	+	8.91166	NA	intron (NM_004113, intron 2 of 5)	L3|LINE|CR1	-107276	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_6102	chr1	142890731	142891073	+	8.91166	NA	Intergenic	CpG	-177297	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family, member A12, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_9250	chr1	201645578	201645750	+	8.90547	NA	intron (NM_020443, intron 1 of 29)	intron (NM_020443, intron 1 of 29)	28214	NM_020443	89796	Hs.585374	NM_020443	HPRD:10113	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
19-PTNLD28-TUMOR_peak_25818	chr12	101539602	101539736	+	8.90547	NA	Intergenic	HERVH-int|LTR|ERV1	64347	NM_145913	160728	Hs.444536	NM_145913		SLC5A8	AIT|SMCT|SMCT1	solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_3717	chr1	56169789	56170000	+	8.90547	NA	Intergenic	Intergenic	478580	NR_039618	100616272		NR_039618	miRBase:MI0016759	MIR4422	-	microRNA 4422	ncRNA
19-PTNLD28-TUMOR_peak_83762	chr5	168225190	168225330	+	8.90547	NA	intron (NM_003062, intron 9 of 35)	AluJr4|SINE|Alu	-30000	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
19-PTNLD28-TUMOR_peak_86738	chr6	32522398	32522562	+	8.90547	NA	non-coding (NR_001298, exon 3 of 6)	non-coding (NR_001298, exon 3 of 6)	5299	NR_001298	3128	Hs.723344	NR_001298	ENSG00000229391	HLA-DRB6	-	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_90460	chr6	165632462	165632632	+	8.90547	NA	Intergenic	Intergenic	90564	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_59282	chr2	241949235	241949869	+	8.90547	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	11297	NM_001080437	25992	Hs.471834	NM_001080437	ENSG00000162804	SNED1	SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_36433	chr16	14658349	14658562	+	8.90547	NA	intron (NM_001134477, intron 18 of 23)	intron (NM_001134477, intron 18 of 23)	65673	NM_002582	5073	Hs.253197	NM_002582	HPRD:07250	PARN	DAN	poly(A)-specific ribonuclease	protein-coding
19-PTNLD28-TUMOR_peak_82566	chr5	139132624	139132798	+	8.90547	NA	Intergenic	Intergenic	-6903	NR_105053	101929696	Hs.147408	NR_105052	ENSG00000249131	LOC101929696	-	uncharacterized LOC101929696	ncRNA
19-PTNLD28-TUMOR_peak_74170	chr4	6511401	6511527	+	8.90547	NA	intron (NM_001206995, intron 2 of 9)	MIR|SINE|MIR	-37138	NM_020416	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_1262	chr1	20492567	20492852	+	8.90547	NA	intron (NM_001105572, intron 2 of 2)	intron (NM_001105572, intron 2 of 2)	8978	NM_001105572	391013	Hs.512512	NM_001105572	ENSG00000187980	PLA2G2C	-	phospholipase A2, group IIC	protein-coding
19-PTNLD28-TUMOR_peak_55453	chr2	122476432	122476526	+	8.90547	NA	intron (NR_037857, intron 3 of 3)	intron (NR_037857, intron 3 of 3)	18024	NM_032390	84365	Hs.367842	NM_032390	HPRD:17576	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
19-PTNLD28-TUMOR_peak_71552	chr3	147896272	147896581	+	8.90547	NA	Intergenic	Intergenic	-519232	NM_009585	185	Hs.477887	NM_000685	HPRD:00107	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_58046	chr2	207846586	207846734	+	8.90547	NA	Intergenic	Intergenic	42382	NM_173077	130749	Hs.684103	NM_173077	HPRD:07098	CPO	-	carboxypeptidase O	protein-coding
19-PTNLD28-TUMOR_peak_84982	chr6	4377788	4377917	+	8.90547	NA	Intergenic	L2c|LINE|L2	-232947	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_109602	chrX	136648156	136648497	+	8.90547	NA	promoter-TSS (NM_003413)	promoter-TSS (NM_003413)	-20	NM_003413	7547	Hs.111227	NM_003413	HPRD:02225	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
19-PTNLD28-TUMOR_peak_101847	chr8_gl000197_random	19994	20093	+	8.90547	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_68532	chr3	57194543	57194705	+	8.90547	NA	intron (NM_017563, intron 1 of 12)	intron (NM_017563, intron 1 of 12)	4779	NM_017563	54756	Hs.150725	NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
19-PTNLD28-TUMOR_peak_104281	chr9	88714069	88714637	+	8.90547	NA	5' UTR (NM_016548, exon 1 of 10)	5' UTR (NM_016548, exon 1 of 10)	157	NM_016548	51280	Hs.494337	NM_016548	HPRD:08428	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_18249	chr11	44560122	44560261	+	8.90547	NA	Intergenic	Intergenic	-26950	NM_002231	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_36088	chr16	6967725	6968130	+	8.90547	NA	intron (NM_001142334, intron 1 of 13)	intron (NM_001142334, intron 1 of 13)	144117	NM_001142334	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_44332	chr18	3453718	3453871	+	8.90507	NA	promoter-TSS (NM_173211)	promoter-TSS (NM_173211)	22	NM_173211	7050	Hs.373550	NM_003244	HPRD:04023	TGIF1	HPE4|TGIF	TGFB-induced factor homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_73484	chr3	195349528	195349669	+	8.90507	NA	Intergenic	Intergenic	-35312	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_95118	chr7	128117233	128117363	+	8.90381	NA	intron (NM_018396, intron 2 of 8)	CpG-24862	515	NM_018396	55798	Hs.433213	NM_018396	HPRD:09705	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding
19-PTNLD28-TUMOR_peak_30978	chr14	69252838	69252992	+	8.90356	NA	Intergenic	Intergenic	7716	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_38270	chr16	66964212	66964344	+	8.89796	NA	Intergenic	Intergenic	4048	NM_016062	51647	Hs.9825	NM_016062	HPRD:13033	FAM96B	MIP18	family with sequence similarity 96, member B	protein-coding
19-PTNLD28-TUMOR_peak_67974	chr3	47206225	47206353	+	8.89780	NA	promoter-TSS (NM_014159)	promoter-TSS (NM_014159)	429	NR_033373	285352	Hs.570631	NR_033373		KIF9-AS1	-	KIF9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63576	chr21	40686531	40686657	+	8.89614	NA	promoter-TSS (NM_018963)	promoter-TSS (NM_018963)	761	NR_111942	103091865	Hs.190548	NR_111942		BRWD1-IT2	-	BRWD1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_41748	chr17	42976424	42976555	+	8.89481	NA	promoter-TSS (NM_213607)	promoter-TSS (NM_213607)	247	NM_001258353	9343	Hs.151787	NM_004247	HPRD:04869	EFTUD2	MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD	elongation factor Tu GTP binding domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_12387	chr10	23385100	23385280	+	8.89481	NA	intron (NM_012228, intron 1 of 4)	intron (NM_012228, intron 1 of 4)	763	NM_012228	22921	Hs.461420	NM_012228	HPRD:17606	MSRB2	CBS-1|CBS1|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
19-PTNLD28-TUMOR_peak_100002	chr8	107071935	107072304	+	8.89481	NA	intron (NR_125796, intron 1 of 7)	LTR26|LTR|ERV1	612	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51480	chr2	20809299	20809409	+	8.89481	NA	Intergenic	Intergenic	-17046	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_44205	chr18	268415	268564	+	8.89481	NA	promoter-TSS (NM_005131)	promoter-TSS (NM_005131)	-430	NM_005131	9984	Hs.712543	NM_005131	HPRD:09498	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding
19-PTNLD28-TUMOR_peak_96561	chr7	153784181	153784375	+	8.89383	NA	intron (NM_001290253, intron 1 of 5)	L2b|LINE|L2	34775	NM_001290253	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_51889	chr2	29451274	29451536	+	8.89383	NA	intron (NM_004304, intron 16 of 28)	intron (NM_004304, intron 16 of 28)	113113	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_38121	chr16	58426258	58426827	+	8.89383	NA	exon (NM_001126129, exon 1 of 4)	exon (NM_001126129, exon 1 of 4)	244	NM_022770	64785	Hs.47125	NM_022770	HPRD:07842	GINS3	PSF3	GINS complex subunit 3 (Psf3 homolog)	protein-coding
19-PTNLD28-TUMOR_peak_60424	chr20	30262773	30263024	+	8.89383	NA	intron (NM_001191, intron 2 of 2)	intron (NM_001191, intron 2 of 2)	37207	NM_032609	84701	Hs.277101	NM_032609	HPRD:12143	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit IV isoform 2 (lung)	protein-coding
19-PTNLD28-TUMOR_peak_43196	chr17	70101083	70101304	+	8.89383	NA	intron (NR_103738, intron 2 of 6)	intron (NR_103738, intron 2 of 6)	10964	NR_103738	400618	Hs.657374	NR_103737	ENSG00000234899	SOX9-AS1	-	SOX9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89566	chr6	135502352	135502457	+	8.89383	NA	promoter-TSS (NM_001161657)	promoter-TSS (NM_001161657)	-49	NM_001161660	4602	Hs.606320	NM_005375	HPRD:01810	MYB	Cmyb|c-myb|c-myb_CDS|efg	v-myb avian myeloblastosis viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_26693	chr12	121086822	121086957	+	8.89383	NA	intron (NM_001033677, intron 1 of 5)	intron (NM_001033677, intron 1 of 5)	-1421	NM_004276	9478	Hs.458482	NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_105307	chr9	112072798	112073148	+	8.89383	NA	intron (NM_018424, intron 1 of 15)	intron (NM_018424, intron 1 of 15)	10271	NM_019114	54566	Hs.591901	NM_018424	HPRD:09940	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
19-PTNLD28-TUMOR_peak_11804	chr10	5538423	5538542	+	8.89383	NA	Intergenic	Intergenic	3051	NM_017422	51806	Hs.180142	NM_017422	HPRD:05538	CALML5	CLSP	calmodulin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_159	chr1	1448143	1448356	+	8.89057	NA	intron (NM_001170536, intron 1 of 15)	intron (NM_001170536, intron 1 of 15)	339	NM_001170536	55210	Hs.23413	NM_018188	HPRD:12500	ATAD3A	-	ATPase family, AAA domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_105536	chr9	116354064	116354176	+	8.89019	NA	intron (NM_130795, intron 12 of 15)	intron (NM_130795, intron 12 of 15)	-2080	NM_144489	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_6478	chr1	147532576	147532911	+	8.89019	NA	Intergenic	CpG	-45555	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_105598	chr9	117266729	117267202	+	8.89019	NA	exon (NM_001173425, exon 1 of 12)	exon (NM_001173425, exon 1 of 12)	771	NM_001173425	25861	Hs.93836	NM_015404	HPRD:09718	DFNB31	CIP98|PDZD7B|USH2D|WHRN|WI	deafness, autosomal recessive 31	protein-coding
19-PTNLD28-TUMOR_peak_23552	chr12	28128186	28128311	+	8.88961	NA	Intergenic	CpG	-3332	NM_198965	5744	Hs.591159	NM_002820	HPRD:01348	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone-like hormone	protein-coding
19-PTNLD28-TUMOR_peak_85793	chr6	19698332	19698455	+	8.88961	NA	Intergenic	Intergenic	-139208	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_73239	chr3	191676868	191677061	+	8.88961	NA	Intergenic	MER89|LTR|ERV1	-279455	NR_046596	100873986	Hs.581652	NR_046596		FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24901	chr12	62340809	62340901	+	8.88961	NA	intron (NM_178539, intron 1 of 4)	L1PA2|LINE|L1	245765	NM_178539	338811	Hs.269745	NM_178539	HPRD:16876	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	protein-coding
19-PTNLD28-TUMOR_peak_87380	chr6	40904609	40904755	+	8.88961	NA	intron (NR_110873, intron 1 of 5)	intron (NR_110873, intron 1 of 5)	86337	NR_110873	101929555	Hs.552555	NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
19-PTNLD28-TUMOR_peak_43187	chr17	69922942	69923149	+	8.88961	NA	Intergenic	Intergenic	99075	NR_110876	102723505	Hs.547482	NR_110876		LOC102723505	-	uncharacterized LOC102723505	ncRNA
19-PTNLD28-TUMOR_peak_29656	chr14	26326654	26326760	+	8.88961	NA	Intergenic	L1PA4|LINE|L1	740253	NM_006491	4857	Hs.31588	NM_002515	HPRD:03693	NOVA1	Nova-1	neuro-oncological ventral antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_66580	chr3	11089241	11089521	+	8.88961	NA	Intergenic	MIRb|SINE|MIR	-28471	NR_046647	100874090	Hs.628542	NR_046647	ENSG00000232287	SLC6A1-AS1	-	SLC6A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56562	chr2	160033171	160033348	+	8.88961	NA	intron (NM_001145909, intron 13 of 26)	intron (NM_001145909, intron 13 of 26)	-10087	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_15701	chr10	114805568	114805668	+	8.88961	NA	intron (NM_001198526, intron 4 of 12)	intron (NM_001198526, intron 4 of 12)	95609	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_12932	chr10	35507352	35507642	+	8.88961	NA	Intergenic	Intergenic	22667	NR_051972	1390	Hs.200250	NM_001881	HPRD:00444	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
19-PTNLD28-TUMOR_peak_103003	chr9	37747284	37747408	+	8.88961	NA	TTS (NM_014907)	TTS (NM_014907)	-6454	NM_144964	158234	Hs.655614	NM_144964	HPRD:15242	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_94439	chr7	101208117	101208407	+	8.88961	NA	TTS (NR_103748)	TTS (NR_103748)	4024	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_42365	chr17	53145220	53145345	+	8.88961	NA	intron (NM_178509, intron 12 of 17)	intron (NM_178509, intron 12 of 17)	99156	NM_178509	252983	Hs.35199	NM_178509	HPRD:18127	STXBP4	Synip	syntaxin binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_55188	chr2	117506118	117506207	+	8.88961	NA	Intergenic	L1PA4|LINE|L1	-1066093	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_4405	chr1	76755457	76755572	+	8.88961	NA	intron (NM_152996, intron 1 of 4)	intron (NM_152996, intron 1 of 4)	215125	NM_001160011	256435	Hs.337040	NM_152996		ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_81942	chr5	126263280	126263470	+	8.88961	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	103125	NM_178450	115123	Hs.132441	NM_178450	HPRD:14362	MARCH3	MARCH-III|RNF173	membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_75068	chr4	41206732	41206888	+	8.88961	NA	intron (NM_004307, intron 1 of 17)	intron (NM_004307, intron 1 of 17)	9825	NM_001166050	323	Hs.479602	NM_004307	HPRD:04088	APBB2	FE65L|FE65L1	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_36980	chr16	27487075	27487171	+	8.88961	NA	intron (NM_001286242, intron 29 of 36)	intron (NM_001286242, intron 29 of 36)	-22409	NR_037158	283888	Hs.660935	NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72940	chr3	186327407	186327516	+	8.88961	NA	Intergenic	Intergenic	-3389	NM_001622	197	Hs.324746	NM_001622	HPRD:00727	AHSG	A2HS|AHS|FETUA|HSGA	alpha-2-HS-glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_21407	chr11	116949017	116949193	+	8.88961	NA	intron (NM_025164, intron 1 of 23)	intron (NM_025164, intron 1 of 23)	20026	NM_025164	23387	Hs.167451	NM_025164	HPRD:11121	SIK3	QSK|SIK-3	SIK family kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_72320	chr3	171069559	171069662	+	8.88961	NA	intron (NR_027767, intron 2 of 2)	intron (NR_027767, intron 2 of 2)	108587	NM_001161564	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_548	chr1	8889677	8889822	+	8.88961	NA	Intergenic	L2|LINE|L2	-12050	NM_001042681	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_42422	chr17	54188211	54188325	+	8.88961	NA	Intergenic	Intergenic	-42568	NM_153228	162282	Hs.673040	NM_153228	HPRD:08238	ANKFN1	-	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_46242	chr18	71863695	71863844	+	8.88961	NA	Intergenic	Intergenic	48023	NM_014177	29090	Hs.532835	NM_014177	HPRD:13706	TIMM21	C18orf55|TIM21	translocase of inner mitochondrial membrane 21 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_8260	chr1	173324572	173324769	+	8.88961	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	121624	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_12118	chr10	13820108	13820225	+	8.88961	NA	intron (NM_018027, intron 6 of 24)	intron (NM_018027, intron 6 of 24)	191227	NM_003675	8559	Hs.729158	NM_003675	HPRD:05407	PRPF18	PRP18|hPrp18	pre-mRNA processing factor 18	protein-coding
19-PTNLD28-TUMOR_peak_101171	chr8	134838937	134839097	+	8.88961	NA	Intergenic	MER117|DNA|hAT-Charlie	-49422	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
19-PTNLD28-TUMOR_peak_66171	chr3	1210066	1210235	+	8.88961	NA	intron (NM_001289080, intron 2 of 22)	LTR16C|LTR|ERVL	75808	NM_001289081	27255	Hs.387300	NM_014461	HPRD:06242	CNTN6	NB3	contactin 6	protein-coding
19-PTNLD28-TUMOR_peak_105555	chr9	116736266	116736587	+	8.88961	NA	intron (NM_133374, intron 2 of 13)	L2a|LINE|L2	97864	NM_133374	114991	Hs.349208	NM_133374	HPRD:18719	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
19-PTNLD28-TUMOR_peak_59171	chr2	239935418	239935533	+	8.88961	NA	Intergenic	Intergenic	55135	NR_039642	100616397		NR_039642		MIR4440	-	microRNA 4440	ncRNA
19-PTNLD28-TUMOR_peak_71736	chr3	150944082	150944210	+	8.88961	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	22852	NM_001081455	9934	Hs.2465	NM_014879	HPRD:08820	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding
19-PTNLD28-TUMOR_peak_48064	chr19	18527354	18527533	+	8.88839	NA	Intergenic	L2c|LINE|L2	-2703	NM_032627	170463	Hs.515259	NM_032627	HPRD:09579	SSBP4	-	single stranded DNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_101526	chr8	143297108	143297291	+	8.88101	NA	intron (NM_145003, intron 13 of 13)	intron (NM_145003, intron 13 of 13)	17482	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
19-PTNLD28-TUMOR_peak_92992	chr7	67538786	67538959	+	8.88101	NA	Intergenic	MER51A|LTR|ERV1	53632	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_41551	chr17	40730491	40730675	+	8.88101	NA	promoter-TSS (NM_016556)	promoter-TSS (NM_016556)	-734	NM_001256015	29893	Hs.383019	NM_013290	HPRD:16362	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_28373	chr13	57739488	57739637	+	8.88101	NA	Intergenic	L1MC3|LINE|L1	-1769	NM_001130407	729250	Hs.525056	NM_001130407	ENSG00000234278	PRR20E	-	proline rich 20E	protein-coding
19-PTNLD28-TUMOR_peak_39007	chr16	81974781	81975051	+	8.88101	NA	intron (NM_002661, intron 30 of 32)	AluY|SINE|Alu	70177	NM_145168	93517	Hs.87779	NM_145168	HPRD:17118	SDR42E1	-	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
19-PTNLD28-TUMOR_peak_19908	chr11	72887946	72888069	+	8.88101	NA	Intergenic	Intergenic	-34864	NM_014824	9873	Hs.744959	NM_014824	HPRD:13321	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding
19-PTNLD28-TUMOR_peak_2314	chr1	35247762	35247913	+	8.87836	NA	promoter-TSS (NM_001005752)	promoter-TSS (NM_001005752)	-74	NM_001005752	2707	Hs.522561	NM_024009	HPRD:04505	GJB3	CX31|DFNA2|DFNA2B|EKV	gap junction protein, beta 3, 31kDa	protein-coding
19-PTNLD28-TUMOR_peak_73926	chr4	2795439	2795597	+	8.87337	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	768	NM_001122681	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_13381	chr10	47151323	47151573	+	8.87267	NA	promoter-TSS (NR_033957)	promoter-TSS (NR_033957)	-48	NR_033957	643650	Hs.744313	NR_033957	ENSG00000223477	LINC00842	-	long intergenic non-protein coding RNA 842	ncRNA
19-PTNLD28-TUMOR_peak_63574	chr21	40685385	40685589	+	8.87201	NA	promoter-TSS (NR_111942)	promoter-TSS (NR_111942)	225	NM_001007246	54014	Hs.627139	NM_018963	HPRD:11683	BRWD1	C21orf107|N143|WDR9	bromodomain and WD repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4309	chr1	70376431	70376534	+	8.87140	NA	intron (NM_020794, intron 5 of 24)	L1PA4|LINE|L1	-8523	NR_023916	5301	Hs.654711	NR_023916		PIN1P1	PIN1L	peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_37855	chr16	53583958	53584106	+	8.87140	NA	Intergenic	Intergenic	-46862	NM_022476	64400	Hs.380897	NM_022476	HPRD:07467	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_92091	chr7	39454048	39454254	+	8.87140	NA	intron (NM_001166018, intron 7 of 10)	CpG	-8206	NR_046711	100861520	Hs.571292	NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15718	chr10	115311790	115312127	+	8.87140	NA	promoter-TSS (NM_004132)	promoter-TSS (NM_004132)	-820	NM_004132	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_1891	chr1	29192570	29192691	+	8.87140	NA	Intergenic	L2c|LINE|L2	-20973	NM_001166005	2035	Hs.175437	NM_004437	HPRD:00558	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19-PTNLD28-TUMOR_peak_42631	chr17	57388471	57388812	+	8.87140	NA	Intergenic	Intergenic	-20412	NM_001005404	388403	Hs.463613	NM_001005404	HPRD:15682	YPEL2	-	yippee-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_100953	chr8	131144168	131144353	+	8.87140	NA	intron (NM_018482, intron 15 of 29)	intron (NM_018482, intron 15 of 29)	-47246	NR_045385	100507117	Hs.106015	NR_045385		ASAP1-IT2	-	ASAP1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11152	chr1	236584384	236584527	+	8.87140	NA	intron (NM_145861, intron 3 of 5)	LTR53|LTR|ERVL	25739	NM_080738	128178	Hs.352224	NM_080738	HPRD:05965	EDARADD	ECTD11A|ECTD11B|ED3|EDA3	EDAR-associated death domain	protein-coding
19-PTNLD28-TUMOR_peak_61646	chr20	47796279	47796494	+	8.87140	NA	intron (NM_001037328, intron 1 of 13)	L4|LINE|RTE	8518	NM_017453	6780	Hs.596704	NM_004602	HPRD:03422	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_32962	chr15	33375852	33376333	+	8.87140	NA	intron (NM_001277313, intron 5 of 20)	MER41B|LTR|ERV1	-15859	NM_001103184	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_61162	chr20	41614967	41615147	+	8.87140	NA	intron (NM_133170, intron 1 of 31)	intron (NM_133170, intron 1 of 31)	203500	NM_007050	11122	Hs.526879	NM_007050	HPRD:06690	PTPRT	RPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding
19-PTNLD28-TUMOR_peak_27409	chr13	22033303	22033445	+	8.87140	NA	non-coding (NR_104487, exon 1 of 13)	non-coding (NR_104487, exon 1 of 13)	134	NM_153251	253832	Hs.564611	NM_153251		ZDHHC20	4933421L13Rik|DHHC-20	zinc finger, DHHC-type containing 20	protein-coding
19-PTNLD28-TUMOR_peak_547	chr1	8882820	8883096	+	8.87140	NA	Intergenic	AmnSINE1|SINE|Deu	-5259	NM_001042681	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_42124	chr17	47485501	47485649	+	8.87140	NA	intron (NM_001281715, intron 6 of 7)	intron (NM_001281715, intron 6 of 7)	6645	NM_001281496	5245	Hs.514303	NM_002634	HPRD:01454	PHB	HEL-215|HEL-S-54e|PHB1	prohibitin	protein-coding
19-PTNLD28-TUMOR_peak_85601	chr6	15526782	15526895	+	8.87140	NA	intron (NM_032122, intron 8 of 9)	intron (NM_032122, intron 8 of 9)	136451	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109362	chrX	122958887	122959036	+	8.87140	NA	Intergenic	MER21B|LTR|ERVL	-34701	NM_001204401	331	Hs.356076	NM_001167	HPRD:02094	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
19-PTNLD28-TUMOR_peak_79565	chr5	38319715	38319954	+	8.87140	NA	intron (NM_001205301, intron 1 of 22)	L2a|LINE|L2	-28746	NR_046219	100852408	Hs.570954	NR_046219	ENSG00000248730	EGFLAM-AS4	-	EGFLAM antisense RNA 4	ncRNA
19-PTNLD28-TUMOR_peak_99663	chr8	99439135	99439270	+	8.87140	NA	promoter-TSS (NM_020697)	promoter-TSS (NM_020697)	-48	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_8951	chr1	189299936	189300054	+	8.87140	NA	Intergenic	L1PA4|LINE|L1	1146764	NM_199051	339479	Hs.65765	NM_199051	HPRD:16782	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	bone morphogenetic protein/retinoic acid inducible neural-specific 3	protein-coding
19-PTNLD28-TUMOR_peak_4253	chr1	68387512	68387758	+	8.87140	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	-88480	NM_018841	55970	Hs.431101	NM_018841	HPRD:13592	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
19-PTNLD28-TUMOR_peak_59323	chr2	242631981	242632166	+	8.87140	NA	Intergenic	LTR26|LTR|ERV1	-5690	NR_033255	1841	Hs.471873	NM_012145	HPRD:01773	DTYMK	CDC8|PP3731|TMPK|TYMK	deoxythymidylate kinase (thymidylate kinase)	protein-coding
19-PTNLD28-TUMOR_peak_30378	chr14	54573801	54573930	+	8.87140	NA	Intergenic	Intergenic	-150311	NM_001202	652	Hs.68879	NM_001202	HPRD:00207	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
19-PTNLD28-TUMOR_peak_89166	chr6	113441514	113441693	+	8.87140	NA	Intergenic	Intergenic	-736924	NM_002356	4082	Hs.519909	NM_002356	HPRD:07519	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
19-PTNLD28-TUMOR_peak_109323	chrX	119378969	119379182	+	8.87140	NA	promoter-TSS (NR_027131)	promoter-TSS (NR_027131)	47	NR_027131	158801	Hs.442518	NM_173522	HPRD:06560	NKAPP1	CXorf42	NFKB activating protein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_42434	chr17	54726267	54726407	+	8.87140	NA	Intergenic	Intergenic	55277	NM_005450	9241	Hs.248201	NM_005450	HPRD:04291	NOG	SYM1|SYNS1	noggin	protein-coding
19-PTNLD28-TUMOR_peak_55344	chr2	121154820	121155084	+	8.87110	NA	Intergenic	Intergenic	51233	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_84138	chr5	173958861	173958990	+	8.86974	NA	Intergenic	Intergenic	-192650	NM_002449	4488	Hs.89404	NM_002449	HPRD:00421	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_82445	chr5	137688477	137688717	+	8.86974	NA	exon (NM_016604, exon 1 of 24)	exon (NM_016604, exon 1 of 24)	312	NM_016604	51780	Hs.483486	NM_016604	HPRD:11055	KDM3B	5qNCA|C5orf7|JMJD1B|NET22	lysine (K)-specific demethylase 3B	protein-coding
19-PTNLD28-TUMOR_peak_97158	chr8	11324015	11324165	+	8.86974	NA	intron (NM_053279, intron 1 of 2)	CpG	186	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_42501	chr17	55685227	55685375	+	8.86974	NA	intron (NR_110807, intron 1 of 2)	MSTB|LTR|ERVL-MaLR	472	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_94432	chr7	101132142	101132380	+	8.86974	NA	intron (NM_133457, intron 3 of 12)	LTR37A|LTR|ERV1	80025	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_13153	chr10	42862580	42862675	+	8.86974	NA	intron (NR_024380, intron 1 of 2)	AluY|SINE|Alu	866	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29145	chr13	113648854	113648947	+	8.86974	NA	intron (NM_001112732, intron 1 of 29)	CpG	-7128	NM_024979	23263	Hs.170422	NM_024979	HPRD:14371	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence-like	protein-coding
19-PTNLD28-TUMOR_peak_62321	chr20	56384838	56384955	+	8.86974	NA	Intergenic	Intergenic	-85554	NR_039757	100616353		NR_039757	miRBase:MI0016899	MIR4532	-	microRNA 4532	ncRNA
19-PTNLD28-TUMOR_peak_65068	chr22	30706503	30706640	+	8.86973	NA	intron (NM_001204240, intron 1 of 8)	MIRb|SINE|MIR	16384	NM_001204240	83874	Hs.655273	NM_031937	HPRD:18162	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_1797	chr1	27917737	27917901	+	8.86973	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	12186	NM_001029882	27245	Hs.469280	NM_001029882	HPRD:10885	AHDC1	MRD25	AT hook, DNA binding motif, containing 1	protein-coding
19-PTNLD28-TUMOR_peak_100759	chr8	127593488	127593803	+	8.86973	NA	Intergenic	LTR17|LTR|ERV1	-22934	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_7002	chr1	153656496	153656608	+	8.86667	NA	intron (NM_000906, intron 7 of 21)	intron (NM_000906, intron 7 of 21)	5388	NM_000906	4881	Hs.490330	NM_000906	HPRD:00165	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_105113	chr9	107690443	107690630	+	8.86424	NA	promoter-TSS (NM_005502)	promoter-TSS (NM_005502)	-9	NM_005502	19	Hs.659274	NM_005502	HPRD:02501	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_46400	chr18	77312755	77312919	+	8.86415	NA	Intergenic	CpG	-126964	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_16334	chr10	134261417	134261588	+	8.86415	NA	exon (NM_173541, exon 3 of 3)	exon (NM_173541, exon 3 of 3)	2788	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_58726	chr2	228718474	228718738	+	8.86415	NA	Intergenic	Intergenic	-17721	NM_178821	164781	Hs.424594	NM_178821	HPRD:08079	DAW1	ODA16|WDR69	dynein assembly factor with WDR repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_19436	chr11	66650761	66650863	+	8.86415	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	24528	NM_022172	5091	Hs.89890	NM_000920	HPRD:02032	PC	PCB	pyruvate carboxylase	protein-coding
19-PTNLD28-TUMOR_peak_12648	chr10	29647930	29648192	+	8.86415	NA	Intergenic	Intergenic	-50402	NR_110923	102724316	Hs.499209	NR_003930		SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19694	chr11	69655475	69655631	+	8.86288	NA	Intergenic	Intergenic	-21361	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_70941	chr3	133537815	133537916	+	8.86288	NA	intron (NM_021203, intron 7 of 7)	intron (NM_021203, intron 7 of 7)	34988	NM_021203	58477	Hs.12152	NM_021203	HPRD:18105	SRPRB	APMCF1	signal recognition particle receptor, B subunit	protein-coding
19-PTNLD28-TUMOR_peak_12907	chr10	35020897	35021061	+	8.86288	NA	intron (NM_001184791, intron 1 of 20)	intron (NM_001184791, intron 1 of 20)	83274	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_55363	chr2	121324355	121324555	+	8.86288	NA	Intergenic	Intergenic	-100530	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_29954	chr14	37117261	37117390	+	8.86288	NA	Intergenic	CpG	-9448	NM_006194	5083	Hs.132576	NM_006194	HPRD:01336	PAX9	STHAG3	paired box 9	protein-coding
19-PTNLD28-TUMOR_peak_957	chr1	15256034	15256256	+	8.86288	NA	promoter-TSS (NM_001018001)	promoter-TSS (NM_001018001)	-151	NM_001018001	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_35509	chr15	101311297	101311534	+	8.86288	NA	Intergenic	Intergenic	-108482	NM_000693	220	Hs.459538	NM_000693	HPRD:02713	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_20105	chr11	75429211	75429459	+	8.86288	NA	intron (NM_025098, intron 1 of 5)	intron (NM_025098, intron 1 of 5)	401	NM_025098	80168	Hs.288568	NM_025098		MOGAT2	DGAT2L5|MGAT2	monoacylglycerol O-acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_5775	chr1	116518748	116518857	+	8.86288	NA	promoter-TSS (NM_018420)	promoter-TSS (NM_018420)	-317	NM_018420	55356	Hs.125482	NM_018420	ENSG00000163393	SLC22A15	FLIPT1|PRO34686	solute carrier family 22, member 15	protein-coding
19-PTNLD28-TUMOR_peak_63112	chr21	32363317	32363449	+	8.86288	NA	Intergenic	Intergenic	47412	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_13209	chr10	43804475	43804699	+	8.86288	NA	Intergenic	Intergenic	-42220	NM_145313	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_76010	chr4	83708637	83708827	+	8.85872	NA	intron (NM_001037582, intron 1 of 4)	intron (NM_001037582, intron 1 of 4)	11278	NM_024906	79966	Hs.379191	NM_024906	HPRD:09756	SCD5	ACOD4|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
19-PTNLD28-TUMOR_peak_90933	chr7	2643183	2643402	+	8.85609	NA	intron (NM_001287501, intron 16 of 19)	intron (NM_001287501, intron 16 of 19)	-28311	NM_025250	80727	Hs.440899	NM_025250	HPRD:12333	TTYH3	-	tweety family member 3	protein-coding
19-PTNLD28-TUMOR_peak_70557	chr3	127348066	127348274	+	8.85609	NA	intron (NM_015720, intron 1 of 7)	CpG	168	NM_015720	50512	Hs.591290	NM_015720	HPRD:15154	PODXL2	EG|PODLX2	podocalyxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_12916	chr10	35176049	35176178	+	8.85609	NA	Intergenic	FRAM|SINE|Alu	71417	NR_108043	100505601	Hs.549790	NR_108043		PARD3-AS1	-	PARD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75369	chr4	55899086	55899303	+	8.85609	NA	Intergenic	Intergenic	92568	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_88437	chr6	79410803	79411061	+	8.85609	NA	Intergenic	Intergenic	-166329	NM_001010844	134728	Hs.656212	NM_001010844	HPRD:17157	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_71686	chr3	150067596	150067743	+	8.85343	NA	Intergenic	Intergenic	-26135	NR_110187	101928022	Hs.555199	NR_110186	ENSG00000243550	LINC01214	-	long intergenic non-protein coding RNA 1214	ncRNA
19-PTNLD28-TUMOR_peak_70713	chr3	129200632	129200883	+	8.85343	NA	intron (NM_052989, intron 14 of 29)	intron (NM_052989, intron 14 of 29)	-41735	NM_001276272	8930	Hs.35947	NM_003925	HPRD:04654	MBD4	MED1	methyl-CpG binding domain protein 4	protein-coding
19-PTNLD28-TUMOR_peak_64128	chr21	47745184	47745387	+	8.84861	NA	intron (NM_006031, intron 1 of 46)	CpG	1249	NM_006031	5116	Hs.474069	NM_006031	HPRD:05804	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
19-PTNLD28-TUMOR_peak_10838	chr1	231556820	231557233	+	8.84861	NA	exon (NM_022051, exon 1 of 5)	exon (NM_022051, exon 1 of 5)	3764	NM_022051	54583	Hs.444450	NM_022051	HPRD:06971	EGLN1	C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia-inducible factor 1	protein-coding
19-PTNLD28-TUMOR_peak_54876	chr2	111076661	111076758	+	8.84861	NA	Intergenic	Intergenic	34279	NR_039941	100616123		NR_039941		MIR4436B1	MIR4436B|hsa-mir-4436b-1	microRNA 4436b-1	ncRNA
19-PTNLD28-TUMOR_peak_11742	chr10	3893860	3894003	+	8.84815	NA	Intergenic	Intergenic	-66458	NM_001160124	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_96641	chr7	155437751	155437960	+	8.84815	NA	intron (NM_053043, intron 1 of 17)	intron (NM_053043, intron 1 of 17)	652	NM_053043	155435	Hs.591815	NM_053043	HPRD:17310	RBM33	PRR8	RNA binding motif protein 33	protein-coding
19-PTNLD28-TUMOR_peak_63900	chr21	45284139	45284344	+	8.84815	NA	promoter-TSS (NM_020132)	promoter-TSS (NM_020132)	-875	NM_020132	56894	Hs.248785	NM_020132	HPRD:10637	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_61245	chr20	43154964	43155083	+	8.84815	NA	Intergenic	MER51B|LTR|ERV1	-4297	NM_198941	10955	Hs.272168	NM_006811	HPRD:06201	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
19-PTNLD28-TUMOR_peak_645	chr1	9895957	9896118	+	8.84815	NA	Intergenic	Intergenic	-11487	NM_014944	22883	Hs.29665	NM_014944	HPRD:10837	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
19-PTNLD28-TUMOR_peak_12581	chr10	27794114	27794222	+	8.84815	NA	intron (NR_046172, intron 1 of 5)	intron (NR_046172, intron 1 of 5)	1065	NM_001256412	22931	Hs.406799	NM_021252	HPRD:03731	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_109540	chrX	134066861	134067202	+	8.84704	NA	Intergenic	Intergenic	-17734	NM_019556	56180	Hs.590789	NM_019556	HPRD:06483	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_619	chr1	9582167	9582354	+	8.84704	NA	Intergenic	L1MB3|LINE|L1	-17268	NM_032315	84275	Hs.568613	NM_032315		SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 (pyrimidine nucleotide carrier), member 33	protein-coding
19-PTNLD28-TUMOR_peak_29225	chr13	114899959	114900074	+	8.84704	NA	Intergenic	Intergenic	-1921	NM_007368	22821	Hs.593075	NM_007368	HPRD:05537	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
19-PTNLD28-TUMOR_peak_28372	chr13	57732917	57733066	+	8.84704	NA	Intergenic	L1MC3|LINE|L1	-1775	NM_001130404	729233	Hs.723090	NM_001130404	ENSG00000204918	PRR20B	-	proline rich 20B	protein-coding
19-PTNLD28-TUMOR_peak_39801	chr17	4400768	4400980	+	8.84704	NA	Intergenic	Intergenic	-1255	NM_001124758	124976	Hs.22824	NM_001124758		SPNS2	-	spinster homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_83631	chr5	159934341	159934450	+	8.84704	NA	Intergenic	Intergenic	22036	NR_029701	406938		NR_029701	miRBase:MI0000477	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
19-PTNLD28-TUMOR_peak_26906	chr12	123755741	123755915	+	8.84704	NA	promoter-TSS (NR_073008)	promoter-TSS (NR_073008)	-179	NR_073008	8099	Hs.433201	NM_004642	HPRD:03726	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin-dependent kinase 2 associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_24930	chr12	63126623	63126766	+	8.84704	NA	intron (NM_020700, intron 5 of 9)	intron (NM_020700, intron 5 of 9)	129228	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_63115	chr21	32370017	32370204	+	8.84704	NA	Intergenic	L1MC3|LINE|L1	40685	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_44330	chr18	3449282	3449491	+	8.84650	NA	promoter-TSS (NM_003244)	promoter-TSS (NM_003244)	-25	NM_001278682	7050	Hs.373550	NM_003244	HPRD:04023	TGIF1	HPE4|TGIF	TGFB-induced factor homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_32923	chr15	32739452	32739662	+	8.84427	NA	intron (NM_001277308, intron 13 of 18)	intron (NM_001277308, intron 13 of 18)	8278	NM_001277308	728047	Hs.525905	NM_001277308		GOLGA8O	-	golgin A8 family, member O	protein-coding
19-PTNLD28-TUMOR_peak_9287	chr1	201978843	201978985	+	8.84262	NA	promoter-TSS (NM_001114309)	promoter-TSS (NM_001114309)	-776	NM_004433	1999	Hs.603657	NM_004433	HPRD:03722	ELF3	EPR-1|ERT|ESE-1|ESX	E74-like factor 3 (ets domain transcription factor, epithelial-specific )	protein-coding
19-PTNLD28-TUMOR_peak_62905	chr21	19274521	19274856	+	8.84157	NA	Intergenic	AluY|SINE|Alu	-14969	NM_001204177	140578	Hs.283725	NM_024944	HPRD:06261	CHODL	C21orf68|MT75	chondrolectin	protein-coding
19-PTNLD28-TUMOR_peak_86793	chr6	33050616	33050716	+	8.84157	NA	intron (NM_002121, intron 2 of 5)	intron (NM_002121, intron 2 of 5)	-2111	NM_001242525	3113	Hs.347270	NM_033554	HPRD:00835	HLA-DPA1	DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_20175	chr11	76536132	76536395	+	8.84157	NA	Intergenic	Intergenic	-35654	NM_018367	55331	Hs.23862	NM_018367		ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
19-PTNLD28-TUMOR_peak_106300	chr9	131487111	131487269	+	8.84157	NA	promoter-TSS (NM_032799)	promoter-TSS (NM_032799)	449	NR_046240	100506100	Hs.62946	NR_046240	ENSG00000223478	LOC100506100	-	uncharacterized LOC100506100	ncRNA
19-PTNLD28-TUMOR_peak_13294	chr10	45471079	45471248	+	8.83895	NA	TTS (NM_007021)	TTS (NM_007021)	3167	NM_007021	11067	Hs.93675	NM_007021	HPRD:12558	C10orf10	DEPP|FIG|Fseg	chromosome 10 open reading frame 10	protein-coding
19-PTNLD28-TUMOR_peak_94515	chr7	102124869	102125039	+	8.83895	NA	intron (NM_001277335, intron 18 of 19)	L2|LINE|L2	-5573	NM_006234	5439	Hs.654952	NM_006234	HPRD:16038	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa	protein-coding
19-PTNLD28-TUMOR_peak_54426	chr2	99389805	99389988	+	8.83879	NA	Intergenic	Intergenic	-42307	NM_012214	11320	Hs.177576	NM_012214	HPRD:06860	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	protein-coding
19-PTNLD28-TUMOR_peak_66832	chr3	14497183	14497346	+	8.83879	NA	intron (NR_103507, intron 5 of 13)	intron (NR_103507, intron 5 of 13)	53188	NM_001134368	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_38699	chr16	74402425	74402845	+	8.83879	NA	promoter-TSS (NR_026950)	promoter-TSS (NR_026950)	-482	NR_026950	283922	Hs.558726	NR_026950	ENSG00000214331	LOC283922	-	pyruvate dehydrogenase phosphatase regulatory subunit pseudogene	pseudo
19-PTNLD28-TUMOR_peak_102103	chr9	6079449	6079771	+	8.83832	NA	Intergenic	HERVI-int|LTR|ERV1	-63970	NM_012416	26953	Hs.167496	NM_012416	HPRD:17953	RANBP6	-	RAN binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_105513	chr9	116104080	116104269	+	8.83832	NA	Intergenic	L2b|LINE|L2	-1554	NM_001012361	114987	Hs.133331	NM_145241	HPRD:18299	WDR31	-	WD repeat domain 31	protein-coding
19-PTNLD28-TUMOR_peak_39483	chr16	89724801	89724917	+	8.83832	NA	promoter-TSS (NR_046418)	promoter-TSS (NR_046418)	404	NR_073516	124045	Hs.655171	NM_153025	HPRD:08105	SPATA33	C16orf55	spermatogenesis associated 33	protein-coding
19-PTNLD28-TUMOR_peak_103617	chr9	70340669	70341004	+	8.83599	NA	Intergenic	TAR1|Satellite|telo	34088	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_81449	chr5	107006685	107006911	+	8.83458	NA	promoter-TSS (NM_001962)	promoter-TSS (NM_001962)	-202	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_36821	chr16	23156533	23156759	+	8.83458	NA	intron (NM_020718, intron 1 of 15)	MER5A1|DNA|hAT-Charlie	3945	NM_020718	57478	Hs.183817	NM_020718	HPRD:15634	USP31	-	ubiquitin specific peptidase 31	protein-coding
19-PTNLD28-TUMOR_peak_73381	chr3	194243417	194243858	+	8.83458	NA	Intergenic	L1MC5|LINE|L1	35768	NR_033929	401106	Hs.407087	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA
19-PTNLD28-TUMOR_peak_61494	chr20	45944574	45944677	+	8.83414	NA	intron (NM_001281772, intron 4 of 23)	intron (NM_001281772, intron 4 of 23)	-2621	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
19-PTNLD28-TUMOR_peak_50011	chr19	51429180	51429306	+	8.83325	NA	Intergenic	Intergenic	-15249	NM_004917	9622	Hs.218366	NM_004917	HPRD:04793	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein-related peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_87272	chr6	38767448	38767594	+	8.83325	NA	intron (NM_001206927, intron 21 of 92)	L1MB8|LINE|L1	84404	NM_001206927	1769	Hs.520106	NM_001371	HPRD:04515	DNAH8	ATPase|hdhc9	dynein, axonemal, heavy chain 8	protein-coding
19-PTNLD28-TUMOR_peak_50508	chr19	58011837	58012004	+	8.83325	NA	intron (NM_198542, intron 1 of 3)	L2|LINE|L2	611	NM_198542	374928	Hs.579576	NM_198542	HPRD:14655	ZNF773	ZNF419B	zinc finger protein 773	protein-coding
19-PTNLD28-TUMOR_peak_100743	chr8	127509283	127509633	+	8.83325	NA	Intergenic	Intergenic	61253	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_24634	chr12	56241748	56241914	+	8.83265	NA	Intergenic	Intergenic	-5064	NM_001272101	4327	Hs.591033	NM_002429		MMP19	MMP18|RASI-1	matrix metallopeptidase 19	protein-coding
19-PTNLD28-TUMOR_peak_73211	chr3	190543996	190544135	+	8.83265	NA	Intergenic	Intergenic	36400	NM_001146686	647309	Hs.518490	NM_001146686	ENSG00000205835	GMNC	GEMC1	geminin coiled-coil domain containing	protein-coding
19-PTNLD28-TUMOR_peak_35155	chr15	90046611	90046873	+	8.83265	NA	Intergenic	Intergenic	-6898	NR_110261	51458	Hs.459284	NM_016321	HPRD:16102	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family, C glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_67092	chr3	21432452	21432664	+	8.83265	NA	Intergenic	Intergenic	-14660	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_101915	chr9	725504	725673	+	8.83265	NA	intron (NM_153186, intron 2 of 10)	intron (NM_153186, intron 2 of 10)	18782	NM_153186	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_38399	chr16	68098754	68099218	+	8.83265	NA	intron (NM_017803, intron 8 of 16)	intron (NM_017803, intron 8 of 16)	-20283	NM_173163	4775	Hs.436585	NM_004555	HPRD:04077	NFATC3	NFAT4|NFATX	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	protein-coding
19-PTNLD28-TUMOR_peak_85356	chr6	11473411	11473545	+	8.83265	NA	Intergenic	Intergenic	-64982	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_83923	chr5	171406981	171407093	+	8.83265	NA	intron (NM_012300, intron 1 of 12)	LTR10C|LTR|ERV1	26840	NM_012300	23291	Hs.484138	NM_012300	HPRD:07294	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_16705	chr11	3025263	3025470	+	8.83265	NA	intron (NM_001014437, intron 20 of 22)	intron (NM_001014437, intron 20 of 22)	-11759	NM_005969	4676	Hs.731784	NM_005969	HPRD:11873	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1-like 4	protein-coding
19-PTNLD28-TUMOR_peak_103794	chr9	74290054	74290190	+	8.83265	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	93678	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_93031	chr7	68832848	68832990	+	8.83265	NA	Intergenic	LTR79|LTR|ERVL	229562	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_31770	chr14	93427706	93427836	+	8.83265	NA	intron (NM_001142593, intron 7 of 10)	intron (NM_001142593, intron 7 of 10)	38326	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_6927	chr1	153211087	153211326	+	8.83265	NA	Intergenic	Intergenic	-20973	NM_000427	4014	Hs.251680	NM_000427	HPRD:01070	LOR	-	loricrin	protein-coding
19-PTNLD28-TUMOR_peak_58244	chr2	214871484	214871582	+	8.83265	NA	intron (NR_047659, intron 14 of 17)	intron (NR_047659, intron 14 of 17)	-404928	NM_001080500	402117	Hs.534834	NM_001080500		VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_14580	chr10	81371114	81371219	+	8.83265	NA	intron (NM_001164646, intron 2 of 5)	MIR3|SINE|MIR	471	NM_001164646	653509	Hs.535295	NM_005411	ENSG00000122852	SFTPA1	COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1	surfactant protein A1	protein-coding
19-PTNLD28-TUMOR_peak_11658	chr10	1559043	1559162	+	8.83265	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-9723	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38008	chr16	57005465	57005644	+	8.83265	NA	intron (NM_001286085, intron 7 of 14)	intron (NM_001286085, intron 7 of 14)	9719	NM_001286085	1071	Hs.89538	NM_000078	HPRD:00325	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein, plasma	protein-coding
19-PTNLD28-TUMOR_peak_50803	chr2	1679502	1679662	+	8.83265	NA	intron (NM_012293, intron 8 of 22)	intron (NM_012293, intron 8 of 22)	68737	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_97498	chr8	21263260	21263390	+	8.83265	NA	Intergenic	Intergenic	107575	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_67925	chr3	46465258	46465394	+	8.83265	NA	Intergenic	LTR18A|LTR|ERVL	16277	NM_001130910	9034	Hs.535713	NM_003965	HPRD:16327	CCRL2	ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR	chemokine (C-C motif) receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_71946	chr3	156919570	156919671	+	8.83265	NA	Intergenic	Intergenic	-41138	NM_020307	57018	Hs.4859	NM_020307		CCNL1	ANIA6A|PRO1073|ania-6a	cyclin L1	protein-coding
19-PTNLD28-TUMOR_peak_18425	chr11	46911340	46911456	+	8.83265	NA	intron (NM_002334, intron 15 of 37)	intron (NM_002334, intron 15 of 37)	28775	NM_002334	4038	Hs.4930	NM_002334	HPRD:18517	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
19-PTNLD28-TUMOR_peak_78560	chr5	191290	191531	+	8.82770	NA	promoter-TSS (NM_001080478)	promoter-TSS (NM_001080478)	-216	NM_001080478	389257	Hs.683662	NM_001080478		LRRC14B	-	leucine rich repeat containing 14B	protein-coding
19-PTNLD28-TUMOR_peak_48654	chr19	35632373	35632495	+	8.82770	NA	intron (NM_001278718, intron 4 of 7)	CpG	-1720	NM_022006	53822	Hs.134729	NM_022006	HPRD:09457	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
19-PTNLD28-TUMOR_peak_19403	chr11	66248096	66248258	+	8.82770	NA	promoter-TSS (NR_120586)	promoter-TSS (NR_120586)	-457	NR_120586	101928069	Hs.523816	NR_120586	ENSG00000255517	LOC101928069	-	uncharacterized LOC101928069	ncRNA
19-PTNLD28-TUMOR_peak_82114	chr5	131794462	131794559	+	8.82409	NA	intron (NR_045116, intron 3 of 3)	L1ME3A|LINE|L1	31955	NM_002198	3659	Hs.436061	NM_002198	HPRD:00961	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_24110	chr12	49524536	49524829	+	8.82409	NA	intron (NM_006082, intron 1 of 3)	CpG	622	NM_006082	10376	Hs.524390	NM_006082	HPRD:03960	TUBA1B	K-ALPHA-1	tubulin, alpha 1b	protein-coding
19-PTNLD28-TUMOR_peak_8602	chr1	181073711	181074035	+	8.82409	NA	Intergenic	Intergenic	16235	NM_016545	51278	Hs.15725	NM_016545	HPRD:06210	IER5	SBBI48	immediate early response 5	protein-coding
19-PTNLD28-TUMOR_peak_80846	chr5	77656913	77657028	+	8.82409	NA	promoter-TSS (NR_105014)	promoter-TSS (NR_105014)	-605	NR_105014	728769	Hs.586193	NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57126	chr2	177016431	177016714	+	8.82409	NA	exon (NM_014621, exon 1 of 2)	exon (NM_014621, exon 1 of 2)	459	NM_014621	3233	Hs.591609	NM_014621	HPRD:00864	HOXD4	HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2	homeobox D4	protein-coding
19-PTNLD28-TUMOR_peak_105415	chr9	114245074	114245180	+	8.82409	NA	intron (NM_001080398, intron 3 of 50)	CpG	1898	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding
19-PTNLD28-TUMOR_peak_41863	chr17	44080017	44080294	+	8.82270	NA	intron (NM_016841, intron 6 of 8).2	AluJr|SINE|Alu	3539	NM_001007532	246744	Hs.661831	NM_001007532	HPRD:06142	STH	MAPTIT	saitohin	protein-coding
19-PTNLD28-TUMOR_peak_104448	chr9	91636185	91636382	+	8.82270	NA	intron (NM_016848, intron 11 of 11)	intron (NM_016848, intron 11 of 11)	29959	NM_005226	1903	Hs.585118	NM_005226	HPRD:03572	S1PR3	EDG-3|EDG3|LPB3|S1P3	sphingosine-1-phosphate receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_36380	chr16	13325314	13325438	+	8.82270	NA	intron (NM_001145204, intron 4 of 4)	intron (NM_001145204, intron 4 of 4)	329899	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_88983	chr6	107396965	107397629	+	8.82270	NA	intron (NM_001080450, intron 4 of 4)	intron (NM_001080450, intron 4 of 4)	38339	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_53719	chr2	84615383	84615713	+	8.82270	NA	Intergenic	Intergenic	71038	NM_003849	8802	Hs.270428	NM_003849	HPRD:18128	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_1680	chr1	26704950	26705130	+	8.82270	NA	Intergenic	Intergenic	-5774	NM_173574	257101	Hs.353208	NM_173574	HPRD:14563	ZNF683	-	zinc finger protein 683	protein-coding
19-PTNLD28-TUMOR_peak_4812	chr1	90642166	90642356	+	8.82270	NA	Intergenic	Intergenic	181583	NM_182976	284695	Hs.306221	NM_181781	HPRD:15774	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
19-PTNLD28-TUMOR_peak_2672	chr1	40137618	40137873	+	8.82270	NA	promoter-TSS (NM_032526)	promoter-TSS (NM_032526)	-35	NM_032526	84618	Hs.307006	NM_032526	HPRD:14844	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
19-PTNLD28-TUMOR_peak_24048	chr12	48395376	48395478	+	8.82270	NA	intron (NM_001844, intron 1 of 53)	CpG	2858	NM_001844	1280	Hs.408182	NM_001844	HPRD:00361	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen, type II, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_3437	chr1	50761279	50761465	+	8.82270	NA	Intergenic	Intergenic	127747	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
19-PTNLD28-TUMOR_peak_78791	chr5	8089805	8089915	+	8.82270	NA	Intergenic	L1PA3|LINE|L1	220643	NM_002454	4552	Hs.481551	NM_002454	HPRD:03979	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
19-PTNLD28-TUMOR_peak_6932	chr1	153253651	153253857	+	8.82270	NA	Intergenic	Intergenic	21575	NM_000427	4014	Hs.251680	NM_000427	HPRD:01070	LOR	-	loricrin	protein-coding
19-PTNLD28-TUMOR_peak_63519	chr21	39875522	39875827	+	8.82270	NA	intron (NR_111949, intron 3 of 4)	intron (NR_111949, intron 3 of 4)	-5246	NM_182918	2078	Hs.473819	NM_004449	HPRD:01298	ERG	erg-3|p55	v-ets avian erythroblastosis virus E26 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_30051	chr14	43442420	43442668	+	8.82270	NA	Intergenic	L1PA3|LINE|L1	1365780	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_43312	chr17	72404541	72404683	+	8.82270	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-23055	NM_022036	55890	Hs.446438	NM_018653		GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor, class C, group 5, member C	protein-coding
19-PTNLD28-TUMOR_peak_61571	chr20	46693824	46693976	+	8.82270	NA	Intergenic	MIR|SINE|MIR	-75039	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
19-PTNLD28-TUMOR_peak_70216	chr3	123194529	123194625	+	8.82270	NA	Intergenic	Intergenic	-27185	NM_183357	111	Hs.593292	NM_183357	HPRD:08973	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
19-PTNLD28-TUMOR_peak_1807	chr1	27977336	27977619	+	8.82270	NA	Intergenic	MIRb|SINE|MIR	-15750	NM_005248	2268	Hs.1422	NM_005248	HPRD:01288	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_108406	chrX	54209213	54209762	+	8.82270	NA	exon (NM_017848, exon 1 of 16)	exon (NM_017848, exon 1 of 16)	204	NM_017848	54954	Hs.86045	NM_017848	HPRD:06480	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
19-PTNLD28-TUMOR_peak_32571	chr15	23157988	23158114	+	8.82270	NA	Intergenic	CpG	-42797	NR_040057	283683	Hs.534616	NR_040057		LOC283683	-	uncharacterized LOC283683	ncRNA
19-PTNLD28-TUMOR_peak_1581	chr1	25188655	25188936	+	8.82270	NA	Intergenic	Intergenic	57112	NR_106789	102465437		NR_106789		MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
19-PTNLD28-TUMOR_peak_66718	chr3	13183573	13183704	+	8.82270	NA	Intergenic	Intergenic	-69021	NM_001134382	9922	Hs.475506	NM_014869	HPRD:11052	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
19-PTNLD28-TUMOR_peak_91022	chr7	4663092	4663187	+	8.82027	NA	Intergenic	SVA_D|Other|Other	-58791	NM_001037165	221937	Hs.487393	NM_001037165	HPRD:18750	FOXK1	FOXK1L	forkhead box K1	protein-coding
19-PTNLD28-TUMOR_peak_60553	chr20	31797672	31797838	+	8.82027	NA	intron (NR_026760, intron 8 of 8)	intron (NR_026760, intron 8 of 8)	-7361	NM_001042439	128861	Hs.360989	NM_178466	HPRD:12782	BPIFA3	C20orf71|SPLUNC3	BPI fold containing family A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_91451	chr7	19156557	19156967	+	8.82027	NA	exon (NM_000474, exon 1 of 2)	exon (NM_000474, exon 1 of 2)	533	NM_000474	7291	Hs.66744	NM_000474	HPRD:03374	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_92968	chr7	66532028	66532240	+	8.82027	NA	intron (NM_018264, intron 9 of 15)	intron (NM_018264, intron 9 of 15)	47250	NR_039794	100616331		NR_039794	miRBase:MI0017278	MIR4650-2	-	microRNA 4650-2	ncRNA
19-PTNLD28-TUMOR_peak_66191	chr3	2396626	2396729	+	8.82027	NA	intron (NM_175607, intron 3 of 24)	intron (NM_175607, intron 3 of 24)	116164	NM_001206955	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_4199	chr1	67930475	67930588	+	8.82027	NA	Intergenic	Intergenic	-34408	NM_001018068	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79700	chr5	42992174	42992310	+	8.82027	NA	non-coding (NR_104643, exon 1 of 2)	non-coding (NR_104643, exon 1 of 2)	1193	NR_104643	643977	Hs.535791	NR_104643		FLJ32255	-	uncharacterized LOC643977	ncRNA
19-PTNLD28-TUMOR_peak_27063	chr12	126185691	126185785	+	8.82027	NA	Intergenic	Intergenic	78740	NM_001286219	114795	Hs.524838	NM_052907		TMEM132B	-	transmembrane protein 132B	protein-coding
19-PTNLD28-TUMOR_peak_79831	chr5	52160295	52160547	+	8.82027	NA	intron (NM_181501, intron 3 of 28)	intron (NM_181501, intron 3 of 28)	76285	NM_181501	3672	Hs.644352	NM_181501		ITGA1	CD49a|VLA1	integrin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_39080	chr16	84346689	84346942	+	8.82027	NA	intron (NM_021197, intron 2 of 6)	CpG-9571	18503	NM_001282466	58189	Hs.36688	NM_021197	HPRD:05614	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
19-PTNLD28-TUMOR_peak_883	chr1	13154147	13154437	+	8.82027	NA	Intergenic	HERV3-int|LTR|ERV1	12901	NR_111945	645354		NR_111945		LOC645354	-	PRAME family member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96185	chr7	148842258	148842354	+	8.81938	NA	intron (NM_020781, intron 2 of 6)	intron (NM_020781, intron 2 of 6)	-2254	NM_170686	57541	Hs.632032	NM_020781	HPRD:18336	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
19-PTNLD28-TUMOR_peak_55342	chr2	121149028	121149226	+	8.81852	NA	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	45408	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_82120	chr5	131832511	131832753	+	8.81852	NA	Intergenic	CpG	-6167	NM_002198	3659	Hs.436061	NM_002198	HPRD:00961	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_48271	chr19	23257921	23258491	+	8.81852	NA	Intergenic	CpG	-14139	NR_110745	101929144	Hs.531631	NR_110745	ENSG00000261615	LOC101929144	-	uncharacterized LOC101929144	ncRNA
19-PTNLD28-TUMOR_peak_21284	chr11	114049987	114050240	+	8.81852	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	-116422	NM_006169	4837	Hs.503911	NM_006169	HPRD:02478	NNMT	-	nicotinamide N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_98769	chr8	54436456	54436730	+	8.81852	NA	Intergenic	HERV3-int|LTR|ERV1	-272336	NM_001282904	4986	Hs.106795	NM_000912	HPRD:01309	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor, kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_109856	chrX	152553310	152553482	+	8.81852	NA	Intergenic	Intergenic	-46217	NM_001080485	10838	Hs.348963	NM_020636	ENSG00000063587	ZNF275	-	zinc finger protein 275	protein-coding
19-PTNLD28-TUMOR_peak_56554	chr2	159988491	159988645	+	8.81852	NA	intron (NM_001145909, intron 4 of 26)	intron (NM_001145909, intron 4 of 26)	-54778	NR_106948	102465535		NR_106948		MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
19-PTNLD28-TUMOR_peak_6855	chr1	152084555	152084742	+	8.81694	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	3282	NM_007113	7062	Hs.432416	NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY	trichohyalin	protein-coding
19-PTNLD28-TUMOR_peak_73606	chr3	196668727	196669051	+	8.81640	NA	promoter-TSS (NR_024388)	promoter-TSS (NR_024388)	575	NM_007362	22916	Hs.591671	NM_007362	HPRD:05503	NCBP2	CBC2|CBP20|NIP1	nuclear cap binding protein subunit 2, 20kDa	protein-coding
19-PTNLD28-TUMOR_peak_64526	chr22	21524129	21524235	+	8.81380	NA	intron (NR_108107, intron 1 of 12)	intron (NR_108107, intron 1 of 12)	2990	NR_108107	642633		NM_201565		FAM230B	-	family with sequence similarity 230, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_25046	chr12	66135937	66136207	+	8.81380	NA	Intergenic	CpG	-82168	NM_003484	8091	Hs.505924	NM_003483	HPRD:02827	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
19-PTNLD28-TUMOR_peak_47446	chr19	12871506	12871610	+	8.81380	NA	Intergenic	L2a|LINE|L2	8151	NM_017682	54831	Hs.435611	NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
19-PTNLD28-TUMOR_peak_106199	chr9	130548560	130548715	+	8.81380	NA	TTS (NR_036055)	TTS (NR_036055)	332	NM_001261	1025	Hs.150423	NM_001261	HPRD:16016	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin-dependent kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_15311	chr10	103874700	103874839	+	8.81380	NA	promoter-TSS (NM_003893)	promoter-TSS (NM_003893)	-46	NM_003893	8861	Hs.454418	NM_003893	HPRD:09144	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
19-PTNLD28-TUMOR_peak_82214	chr5	133523271	133523486	+	8.81351	NA	Intergenic	Intergenic	-10654	NM_006930	6500	Hs.171626	NM_006930		SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22533	chr12	3244722	3244858	+	8.81351	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	58269	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_32658	chr15	26271474	26271600	+	8.81351	NA	intron (NR_040082, intron 2 of 4)	MER41A|LTR|ERV1	-89423	NR_038851	503519	Hs.371380	NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
19-PTNLD28-TUMOR_peak_16291	chr10	131934567	131934698	+	8.81351	NA	promoter-TSS (NM_001199868)	promoter-TSS (NM_001199868)	-7	NM_006541	10539	Hs.42644	NM_006541	HPRD:10153	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
19-PTNLD28-TUMOR_peak_9564	chr1	204729516	204729779	+	8.81351	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-68135	NM_015090	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_84591	chr5	180587532	180588394	+	8.81295	NA	Intergenic	(CTGGGG)n|Simple_repeat|Simple_repeat	6020	NM_206880	285659	Hs.553681	NM_206880	HPRD:14956	OR2V2	OR2V3|OST713	olfactory receptor, family 2, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_37242	chr16	30545733	30546097	+	8.81295	NA	exon (NM_023931, exon 1 of 2)	exon (NM_023931, exon 1 of 2)	279	NM_023931	65988	Hs.592032	NM_023931		ZNF747	-	zinc finger protein 747	protein-coding
19-PTNLD28-TUMOR_peak_73544	chr3	195808240	195808514	+	8.80706	NA	intron (NM_001128148, intron 1 of 18)	CpG	584	NM_003234	7037	Hs.529618	NM_003234	HPRD:01812	TFRC	CD71|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
19-PTNLD28-TUMOR_peak_1589	chr1	25525268	25525554	+	8.80288	NA	Intergenic	Intergenic	33602	NM_015484	25949	Hs.20013	NM_015484		SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA-splicing factor	protein-coding
19-PTNLD28-TUMOR_peak_6031	chr1	120808324	120808697	+	8.80288	NA	Intergenic	Intergenic	-30495	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_82176	chr5	133161358	133161694	+	8.80288	NA	Intergenic	Intergenic	142880	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_92909	chr7	65509301	65509410	+	8.80288	NA	Intergenic	CpG	-31421	NM_000048	435	Hs.632015	NM_000048	HPRD:01948	ASL	ASAL	argininosuccinate lyase	protein-coding
19-PTNLD28-TUMOR_peak_86547	chr6	30910522	30910659	+	8.80136	NA	intron (NM_080870, intron 1 of 2)	intron (NM_080870, intron 1 of 2)	1813	NM_080870	135656	Hs.631993	NM_080870	HPRD:16073	DPCR1	PBLT	diffuse panbronchiolitis critical region 1	protein-coding
19-PTNLD28-TUMOR_peak_79754	chr5	44809845	44810027	+	8.80043	NA	intron (NM_016640, intron 1 of 4)	intron (NM_016640, intron 1 of 4)	909	NM_016640	10884	Hs.124165	NM_016640	HPRD:17597	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
19-PTNLD28-TUMOR_peak_73533	chr3	195687956	195688075	+	8.80043	NA	intron (NR_003264, intron 16 of 16)	intron (NR_003264, intron 16 of 16)	29135	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_51826	chr2	28672441	28672538	+	8.80043	NA	Intergenic	L2c|LINE|L2	-46449	NM_001170585	151056	Hs.444933	NM_153021	HPRD:15141	PLB1	PLB|PLB/LIP|hPLB	phospholipase B1	protein-coding
19-PTNLD28-TUMOR_peak_85681	chr6	16771260	16771406	+	8.79979	NA	Intergenic	Intergenic	-9612	NM_000332	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_26081	chr12	107714007	107714182	+	8.79979	NA	intron (NM_001018072, intron 1 of 16)	CpG	1897	NM_001018072	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_103938	chr9	78796391	78796510	+	8.79979	NA	exon (NM_001190482, exon 16 of 37)	exon (NM_001190482, exon 16 of 37)	212994	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_89034	chr6	109269455	109269574	+	8.79979	NA	intron (NM_032131, intron 12 of 17)	intron (NM_032131, intron 12 of 17)	-24208	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36039	chr16	4784837	4784989	+	8.79979	NA	promoter-TSS (NM_133450)	promoter-TSS (NM_133450)	-535	NR_040252	124401	Hs.654859	NM_133450	HPRD:13909	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_23010	chr12	10365363	10365509	+	8.79972	NA	promoter-TSS (NM_031412)	promoter-TSS (NM_031412)	-53	NM_031412	23710	Hs.524250	NM_031412	HPRD:07601	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA(A) receptor-associated protein like 1	protein-coding
19-PTNLD28-TUMOR_peak_68189	chr3	50202921	50203107	+	8.79771	NA	intron (NM_004186, intron 2 of 18)	intron (NM_004186, intron 2 of 18)	10166	NM_004186	6405	Hs.32981	NM_004186	HPRD:03079	SEMA3F	SEMA-IV|SEMA4|SEMAK	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding
19-PTNLD28-TUMOR_peak_53878	chr2	86426489	86426684	+	8.79771	NA	promoter-TSS (NM_145644)	promoter-TSS (NM_145644)	30	NM_016622	51318	Hs.433439	NM_016622	HPRD:14755	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding
19-PTNLD28-TUMOR_peak_63542	chr21	40282379	40282921	+	8.79660	NA	intron (NR_120405, intron 2 of 3)	intron (NR_120405, intron 2 of 3)	27703	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
19-PTNLD28-TUMOR_peak_71940	chr3	156877129	156877593	+	8.79075	NA	intron (NM_020307, intron 1 of 10)	CpG-19080	1121	NM_020307	57018	Hs.4859	NM_020307		CCNL1	ANIA6A|PRO1073|ania-6a	cyclin L1	protein-coding
19-PTNLD28-TUMOR_peak_41921	chr17	45019985	45020139	+	8.78659	NA	Intergenic	Intergenic	19576	NM_004287	9570	Hs.463278	NM_004287	HPRD:04937	GOSR2	Bos1|EPM6|GS27	golgi SNAP receptor complex member 2	protein-coding
19-PTNLD28-TUMOR_peak_3481	chr1	52036076	52036228	+	8.78659	NA	Intergenic	MIR3|SINE|MIR	-46394	NM_148909	114883	Hs.21938	NM_024586	HPRD:09479	OSBPL9	ORP-9|ORP9	oxysterol binding protein-like 9	protein-coding
19-PTNLD28-TUMOR_peak_48005	chr19	18169198	18169380	+	8.78659	NA	TTS (NM_001290024)	TTS (NM_001290024)	28524	NM_153701	3594	Hs.567294	NM_005535	HPRD:03363	IL12RB1	CD212|IL-12R-BETA1|IL12RB	interleukin 12 receptor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_74400	chr4	9019181	9019327	+	8.78659	NA	Intergenic	Intergenic	67777	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_101653	chr8	144764364	144764467	+	8.78659	NA	Intergenic	LTR27|LTR|ERV1	-2207	NM_001288809	286075	Hs.521922	NM_173831	HPRD:14162	ZNF707	-	zinc finger protein 707	protein-coding
19-PTNLD28-TUMOR_peak_23101	chr12	12716580	12716706	+	8.78578	NA	Intergenic	Intergenic	-1195	NM_030640	80824	Hs.536535	NM_030640		DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
19-PTNLD28-TUMOR_peak_47238	chr19	10727643	10727750	+	8.78578	NA	intron (NM_001145056, intron 1 of 21)	AluY|SINE|Alu	-8475	NM_020428	57153	Hs.534560	NM_020428	HPRD:16198	SLC44A2	CTL2|PP1292	solute carrier family 44 (choline transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_1788	chr1	27868985	27869156	+	8.78549	NA	intron (NM_001029882, intron 6 of 6)	MIRb|SINE|MIR	-52392	NM_001201404	10163	Hs.469244	NM_006990	HPRD:05796	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_1081	chr1	16675444	16675579	+	8.78549	NA	intron (NM_018994, intron 1 of 9)	intron (NM_018994, intron 1 of 9)	3437	NM_018994	54455	Hs.522384	NM_018994	ENSG00000037637	FBXO42	Fbx42|JFK	F-box protein 42	protein-coding
19-PTNLD28-TUMOR_peak_41807	chr17	43371957	43372289	+	8.78549	NA	intron (NM_003954, intron 1 of 15)	MER5A|DNA|hAT-Charlie	22307	NM_003954	9020	Hs.404183	NM_003954		MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_100822	chr8	128814469	128814791	+	8.78549	NA	Intergenic	AluJo|SINE|Alu	6422	NR_031609	100302185		NR_031609	miRBase:MI0006337	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
19-PTNLD28-TUMOR_peak_48585	chr19	34625656	34625816	+	8.78549	NA	Intergenic	CpG	-37616	NM_015578	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_51011	chr2	9910473	9910892	+	8.78055	NA	Intergenic	MIR|SINE|MIR	-72889	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_39864	chr17	4981285	4981547	+	8.78055	NA	promoter-TSS (NM_153018)	promoter-TSS (NM_153018)	-338	NM_153018	124961	Hs.48832	NM_153018	HPRD:08705	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_21439	chr11	117328684	117328968	+	8.78055	NA	intron (NM_020693, intron 19 of 32)	intron (NM_020693, intron 19 of 32)	130255	NM_014956	22897	Hs.504009	NM_014956	HPRD:10854	CEP164	NPHP15	centrosomal protein 164kDa	protein-coding
19-PTNLD28-TUMOR_peak_193	chr1	1946547	1946704	+	8.78055	NA	Intergenic	Intergenic	-4143	NM_000815	2563	Hs.113882	NM_000815	HPRD:08842	GABRD	EIG10|EJM7|GEFSP5	gamma-aminobutyric acid (GABA) A receptor, delta	protein-coding
19-PTNLD28-TUMOR_peak_73745	chr4	628680	629071	+	8.78055	NA	intron (NM_000283, intron 2 of 21)	(CCTG)n|Simple_repeat|Simple_repeat	9512	NM_001145291	5158	Hs.623810	NM_000283	HPRD:01571	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B, cGMP-specific, rod, beta	protein-coding
19-PTNLD28-TUMOR_peak_7235	chr1	155862681	155862792	+	8.78055	NA	Intergenic	AluJr|SINE|Alu	17970	NM_001256821	6016	Hs.491234	NM_006912	HPRD:10195	RIT1	NS8|RIBB|RIT|ROC1	Ras-like without CAAX 1	protein-coding
19-PTNLD28-TUMOR_peak_26210	chr12	109983122	109983267	+	8.78055	NA	Intergenic	L2b|LINE|L2	28164	NM_052845	326625	Hs.12106	NM_052845	HPRD:07398	MMAB	ATR|CFAP23|cblB|cob	methylmalonic aciduria (cobalamin deficiency) cblB type	protein-coding
19-PTNLD28-TUMOR_peak_98177	chr8	37378533	37378626	+	8.78055	NA	intron (NR_121621, intron 1 of 2)	intron (NR_121621, intron 1 of 2)	325	NR_121621	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_87799	chr6	46358003	46358222	+	8.78055	NA	intron (NM_001251973, intron 2 of 4)	intron (NM_001251973, intron 2 of 4)	-64483	NM_005822	10231	Hs.440168	NM_005822	HPRD:05342	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
19-PTNLD28-TUMOR_peak_23703	chr12	33047645	33047743	+	8.77979	NA	intron (NM_001005242, intron 1 of 12)	intron (NM_001005242, intron 1 of 12)	2086	NM_004572	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_75874	chr4	79477977	79478115	+	8.77979	NA	intron (NM_005139, intron 2 of 12)	intron (NM_005139, intron 2 of 12)	5304	NM_005139	306	Hs.480042	NM_005139	HPRD:00111	ANXA3	ANX3	annexin A3	protein-coding
19-PTNLD28-TUMOR_peak_608	chr1	9473259	9473830	+	8.77945	NA	Intergenic	Intergenic	15431	NR_104623	100506022	Hs.131775	NR_104622		LOC100506022	-	uncharacterized LOC100506022	ncRNA
19-PTNLD28-TUMOR_peak_59875	chr20	13765855	13766162	+	8.77945	NA	promoter-TSS (NM_001276380)	promoter-TSS (NM_001276380)	336	NR_029377	79133	Hs.472165	NM_024120	HPRD:12780	NDUFAF5	C20orf7|bA526K24.2|dJ842G6.1	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
19-PTNLD28-TUMOR_peak_79825	chr5	52082790	52082909	+	8.77945	NA	promoter-TSS (NM_015946)	promoter-TSS (NM_015946)	-925	NM_015946	53918	Hs.644352	NM_015946		PELO	PRO1770	pelota homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_49743	chr19	49199151	49199305	+	8.77945	NA	promoter-TSS (NM_000511)	promoter-TSS (NM_000511)	0	NM_000511	2524	Hs.579928	NM_000511	HPRD:01629	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2 (secretor status included)	protein-coding
19-PTNLD28-TUMOR_peak_83895	chr5	170877584	170877946	+	8.77945	NA	intron (NM_003862, intron 4 of 4)	GC_rich|Low_complexity|Low_complexity	31098	NM_003862	8817	Hs.87191	NM_003862	HPRD:04766	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
19-PTNLD28-TUMOR_peak_5370	chr1	109836673	109836841	+	8.77945	NA	intron (NM_001010985, intron 8 of 8)	intron (NM_001010985, intron 8 of 8)	-10967	NM_001032291	84722	Hs.405925	NM_032636	HPRD:13127	PSRC1	DDA3|FP3214	proline/serine-rich coiled-coil 1	protein-coding
19-PTNLD28-TUMOR_peak_69580	chr3	107242269	107242704	+	8.77902	NA	intron (NM_001276286, intron 1 of 16)	CpG	703	NM_001276286	56987	Hs.124366	NM_020235	HPRD:10688	BBX	ARTC1|HBP2|HSPC339|MDS001	bobby sox homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34826	chr15	82163039	82163274	+	8.77789	NA	Intergenic	L1PA2|LINE|L1	175328	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_89969	chr6	150463466	150463815	+	8.77789	NA	promoter-TSS (NM_030949)	promoter-TSS (NM_030949)	-548	NM_030949	81706	Hs.486798	NM_030949	HPRD:17890	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1, regulatory (inhibitor) subunit 14C	protein-coding
19-PTNLD28-TUMOR_peak_99379	chr8	86018984	86019158	+	8.77789	NA	promoter-TSS (NM_033402)	promoter-TSS (NM_033402)	-252	NM_033402	85444	Hs.193115	NM_033402	HPRD:11160	LRRCC1	CLERC|SAP2|VFL1	leucine rich repeat and coiled-coil centrosomal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_52781	chr2	53747102	53747791	+	8.77789	NA	Intergenic	Intergenic	-247483	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_14281	chr10	74021527	74021642	+	8.77789	NA	Intergenic	MIRc|SINE|MIR	-12093	NM_019058	54541	Hs.744875	NM_019058	HPRD:09662	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_59092	chr2	238430686	238430852	+	8.77789	NA	intron (NM_001281474, intron 7 of 13)	intron (NM_001281474, intron 7 of 13)	11195	NR_106869	102465486		NR_106869		MIR6811	hsa-mir-6811	microRNA 6811	ncRNA
19-PTNLD28-TUMOR_peak_37099	chr16	29142798	29142978	+	8.77789	NA	Intergenic	Intergenic	56725	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_16835	chr11	5627291	5627411	+	8.77789	NA	intron (NM_001003818, intron 4 of 7)	intron (NM_001003818, intron 4 of 7)	9486	NM_001003818	117854	Hs.729048	NM_058166	HPRD:12123	TRIM6	RNF89	tripartite motif containing 6	protein-coding
19-PTNLD28-TUMOR_peak_36212	chr16	10208325	10208569	+	8.77789	NA	intron (NM_000833, intron 3 of 13)	intron (NM_000833, intron 3 of 13)	67477	NM_001134408	2903	Hs.411472	NM_000833	HPRD:00698	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	protein-coding
19-PTNLD28-TUMOR_peak_68106	chr3	49208861	49209024	+	8.77789	NA	promoter-TSS (NM_173546)	promoter-TSS (NM_173546)	-76	NM_173546	200942	Hs.13781	NM_173546	HPRD:14598	KLHDC8B	-	kelch domain containing 8B	protein-coding
19-PTNLD28-TUMOR_peak_81918	chr5	125817043	125817385	+	8.77789	NA	intron (NM_001146319, intron 8 of 13)	L1MB7|LINE|L1	16427	NM_001146322	65983	Hs.363558	NM_023927	HPRD:11402	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_4461	chr1	78511826	78512315	+	8.77789	NA	intron (NM_017655, intron 1 of 5)	CpG	481	NM_017655	54810	Hs.659356	NM_017655		GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_47934	chr19	17785226	17785444	+	8.77789	NA	intron (NM_001080421, intron 3 of 41)	L2a|LINE|L2	13673	NM_001080421	23025	Hs.164502	NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_926	chr1	14363703	14363830	+	8.77789	NA	Intergenic	L1ME4a|LINE|L1	287890	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_1711	chr1	27126356	27126672	+	8.77789	NA	Intergenic	Intergenic	11835	NM_001202554	55650	Hs.259605	NM_017837	HPRD:07912	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding
19-PTNLD28-TUMOR_peak_43988	chr17	79568676	79568786	+	8.77789	NA	intron (NM_017921, intron 8 of 16)	intron (NM_017921, intron 8 of 16)	35407	NM_017921	55666	Hs.464333	NM_017921	HPRD:06975	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_56263	chr2	150504927	150505077	+	8.77789	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-60672	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_91810	chr7	29649302	29649625	+	8.77789	NA	Intergenic	Intergenic	46036	NM_175887	222171	Hs.91109	NM_175887	HPRD:14136	PRR15	-	proline rich 15	protein-coding
19-PTNLD28-TUMOR_peak_31786	chr14	93557700	93558152	+	8.77789	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	24129	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_12086	chr10	13142407	13142716	+	8.77660	NA	promoter-TSS (NM_001282658)	promoter-TSS (NM_001282658)	479	NM_001008211	10133	Hs.332706	NM_021980	HPRD:03891	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
19-PTNLD28-TUMOR_peak_208	chr1	2144291	2144455	+	8.77660	NA	promoter-TSS (NM_001282670)	promoter-TSS (NM_001282670)	-214	NM_001282670	199990	Hs.107101	NM_182533	HPRD:08707	C1orf86	FAAP20|FP7162	chromosome 1 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_63956	chr21	45844972	45845109	+	8.77660	NA	non-coding (NR_109964, exon 1 of 3)	non-coding (NR_109964, exon 1 of 3)	406	NR_109964	101928607	Hs.666176	NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_26313	chr12	111462124	111462260	+	8.77652	NA	Intergenic	Intergenic	-9636	NM_015267	23316	Hs.124953	NM_015267	HPRD:10851	CUX2	CDP2|CUTL2	cut-like homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_83760	chr5	168106559	168106707	+	8.77652	NA	intron (NM_003062, intron 32 of 35)	intron (NM_003062, intron 32 of 35)	88627	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
19-PTNLD28-TUMOR_peak_11746	chr10	3953965	3954140	+	8.77652	NA	Intergenic	Intergenic	-79300	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
19-PTNLD28-TUMOR_peak_26952	chr12	124702170	124702486	+	8.77652	NA	intron (NM_001204299, intron 3 of 4)	intron (NM_001204299, intron 3 of 4)	-71382	NM_181709	144347	Hs.432901	NM_181709	HPRD:14066	FAM101A	CFM2	family with sequence similarity 101, member A	protein-coding
19-PTNLD28-TUMOR_peak_66216	chr3	3750096	3750420	+	8.77652	NA	Intergenic	MER41C|LTR|ERV1	-90863	NM_020873	57633	Hs.163244	NM_020873	HPRD:14320	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_23153	chr12	13197230	13197441	+	8.77652	NA	promoter-TSS (NM_020853)	promoter-TSS (NM_020853)	20	NM_020853	57613	Hs.132660	NM_020853	HPRD:11149	KIAA1467	-	KIAA1467	protein-coding
19-PTNLD28-TUMOR_peak_31967	chr14	98918041	98918204	+	8.77652	NA	Intergenic	HERVH-int|LTR|ERV1	-259828	NM_182560	283598	Hs.448754	NM_182560	HPRD:08075	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_4412	chr1	77230604	77231037	+	8.77652	NA	Intergenic	Intergenic	-102366	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_59641	chr20	4742348	4742440	+	8.77652	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-21080	NR_024267	149830	Hs.126516	NM_177549	HPRD:14086	PRNT	M8	prion protein (testis specific)	ncRNA
19-PTNLD28-TUMOR_peak_82808	chr5	141676742	141676928	+	8.77652	NA	Intergenic	Intergenic	27147	NM_001293289	81848	Hs.323308	NM_030964	HPRD:10466	SPRY4	HH17	sprouty homolog 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_30573	chr14	59527565	59527808	+	8.77652	NA	Intergenic	Intergenic	-127695	NM_001270520	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_27195	chr12	131303578	131303747	+	8.77652	NA	intron (NM_194356, intron 3 of 10)	CpG	20157	NM_194356	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_78467	chr4	189293375	189293477	+	8.77652	NA	Intergenic	Intergenic	-83306	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_89981	chr6	150716700	150716844	+	8.77652	NA	intron (NM_001164694, intron 5 of 5)	intron (NM_001164694, intron 5 of 5)	26744	NM_001164695	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_39130	chr16	84980735	84980896	+	8.77652	NA	Intergenic	Intergenic	64326	NM_017740	55625	Hs.461610	NM_017740	HPRD:15722	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger, DHHC-type containing 7	protein-coding
19-PTNLD28-TUMOR_peak_64947	chr22	28642521	28642630	+	8.77652	NA	intron (NM_001145418, intron 5 of 22)	MIRb|SINE|MIR	-213282	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
19-PTNLD28-TUMOR_peak_84990	chr6	4487934	4488046	+	8.77652	NA	Intergenic	LTR10A|LTR|ERV1	-122809	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_102000	chr9	3794027	3794333	+	8.77652	NA	Intergenic	Intergenic	-104466	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62922	chr21	20833957	20834321	+	8.77652	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-702009	NR_109925	101927797	Hs.551743	NR_109925		LOC101927797	-	uncharacterized LOC101927797	ncRNA
19-PTNLD28-TUMOR_peak_27599	chr13	28674704	28674935	+	8.77652	NA	promoter-TSS (NM_004119)	promoter-TSS (NM_004119)	-90	NM_004119	2322	Hs.507590	NM_004119	HPRD:00635	FLT3	CD135|FLK-2|FLK2|STK1	fms-related tyrosine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_101173	chr8	134895211	134895346	+	8.77652	NA	Intergenic	Intergenic	-3461	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_57983	chr2	206396737	206396910	+	8.77652	NA	intron (NM_205863, intron 20 of 21)	intron (NM_205863, intron 20 of 21)	-150401	NM_201266	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_4848	chr1	92051565	92051778	+	8.77652	NA	Intergenic	Intergenic	85006	NM_001134420	8317	Hs.533573	NM_003503	HPRD:10345	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
19-PTNLD28-TUMOR_peak_75457	chr4	57968297	57968616	+	8.77652	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-7472	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28815	chr13	99630278	99630496	+	8.77652	NA	promoter-TSS (NM_001130048)	promoter-TSS (NM_001130048)	-49	NM_001130050	23348	Hs.596105	NM_015296	HPRD:09542	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
19-PTNLD28-TUMOR_peak_88199	chr6	65040757	65041079	+	8.77652	NA	intron (NM_001292009, intron 29 of 43)	HERV1_I-int|LTR|ERV1	684487	NM_015153	23469	Hs.348921	NM_015153	HPRD:08477	PHF3	-	PHD finger protein 3	protein-coding
19-PTNLD28-TUMOR_peak_23803	chr12	41582331	41582485	+	8.77652	NA	exon (NM_001164595, exon 1 of 10)	exon (NM_001164595, exon 1 of 10)	158	NM_001164595	29951	Hs.380044	NM_013377	HPRD:15116	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
19-PTNLD28-TUMOR_peak_95618	chr7	136464978	136465113	+	8.77652	NA	Intergenic	L1PA2|LINE|L1	-88354	NM_001006627	1129	Hs.535891	NM_000739	HPRD:00328	CHRM2	HM2	cholinergic receptor, muscarinic 2	protein-coding
19-PTNLD28-TUMOR_peak_79567	chr5	38420914	38421027	+	8.77652	NA	intron (NM_182798, intron 7 of 16)	intron (NM_182798, intron 7 of 16)	17336	NM_182798	133584	Hs.20103	NM_152403	HPRD:13433	EGFLAM	AGRINL|AGRNL|PIKA	EGF-like, fibronectin type III and laminin G domains	protein-coding
19-PTNLD28-TUMOR_peak_5634	chr1	113742507	113742678	+	8.77652	NA	intron (NR_038846, intron 2 of 2)	intron (NR_038846, intron 2 of 2)	6283	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_105380	chr9	113004161	113004330	+	8.77652	NA	Intergenic	L2b|LINE|L2	14675	NM_003329	7295	Hs.435136	NM_003329	HPRD:01761	TXN	TRDX|TRX|TRX1	thioredoxin	protein-coding
19-PTNLD28-TUMOR_peak_92439	chr7	47541141	47541344	+	8.77481	NA	intron (NM_022748, intron 3 of 30)	intron (NM_022748, intron 3 of 30)	80500	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_17881	chr11	33087214	33087374	+	8.77481	NA	intron (NM_001145541, intron 7 of 9)	intron (NM_001145541, intron 7 of 9)	-10402	NR_015451	283267	Hs.533701	NR_015451		LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	ncRNA
19-PTNLD28-TUMOR_peak_105331	chr9	112283230	112283396	+	8.77481	NA	Intergenic	Intergenic	-22720	NM_001145368	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_72515	chr3	177376274	177376400	+	8.77481	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-158316	NR_110826	102724550	Hs.570526	NR_110826		LOC102724550	-	uncharacterized LOC102724550	ncRNA
19-PTNLD28-TUMOR_peak_22319	chr11	134709939	134710214	+	8.77481	NA	Intergenic	L1MA9|LINE|L1	403700	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	ncRNA
19-PTNLD28-TUMOR_peak_27776	chr13	33854057	33854404	+	8.77481	NA	intron (NR_046693, intron 2 of 2)	intron (NR_046693, intron 2 of 2)	2539	NR_046693	100874241	Hs.662433	NR_046693	ENSG00000236581	STARD13-AS	STARD13-AS2	STARD13 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_94047	chr7	95664703	95665047	+	8.77481	NA	intron (NM_001278421, intron 11 of 15)	intron (NM_001278421, intron 11 of 15)	184193	NR_030322	693176		NR_030322		MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
19-PTNLD28-TUMOR_peak_21437	chr11	117297114	117297397	+	8.77481	NA	Intergenic	Intergenic	98684	NM_014956	22897	Hs.504009	NM_014956	HPRD:10854	CEP164	NPHP15	centrosomal protein 164kDa	protein-coding
19-PTNLD28-TUMOR_peak_18004	chr11	34534537	34534639	+	8.77481	NA	intron (NM_001243080, intron 1 of 4)	intron (NM_001243080, intron 1 of 4)	759	NM_001422	2001	Hs.11713	NM_001422	HPRD:05525	ELF5	ESE2	E74-like factor 5 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_28557	chr13	78271825	78272009	+	8.77481	NA	promoter-TSS (NM_001242868)	promoter-TSS (NM_001242868)	-72	NM_001242868	122060	Hs.349955	NM_144595	HPRD:13400	SLAIN1	C13orf32	SLAIN motif family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_29628	chr14	25082552	25082736	+	8.77481	NA	Intergenic	Intergenic	-3718	NM_033423	2999	Hs.348264	NM_033423	HPRD:00290	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H (cathepsin G-like 2, protein h-CCPX)	protein-coding
19-PTNLD28-TUMOR_peak_27768	chr13	33693566	33693807	+	8.77481	NA	intron (NM_178006, intron 7 of 13)	intron (NM_178006, intron 7 of 13)	66530	NM_001243466	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_93097	chr7	71198242	71198476	+	8.77481	NA	Intergenic	Intergenic	-425603	NR_037477	100500836		NR_037477	miRBase:MI0016419	MIR3914-1	-	microRNA 3914-1	ncRNA
19-PTNLD28-TUMOR_peak_83487	chr5	157098252	157098564	+	8.77481	NA	promoter-TSS (NM_001145132)	promoter-TSS (NM_001145132)	-153	NM_001145132	100190949	Hs.720862	NM_001145132	ENSG00000187658	C5orf52	-	chromosome 5 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_94183	chr7	98709730	98710007	+	8.77481	NA	intron (NM_001199847, intron 1 of 17)	L1M4|LINE|L1	31875	NM_020429	57154	Hs.189329	NM_020429	HPRD:06902	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_68397	chr3	53289463	53289740	+	8.77277	NA	intron (NR_047580, intron 1 of 13)	CpG	529	NM_001135055	7086	Hs.89643	NM_001064	HPRD:06001	TKT	HEL107|TK|TKT1	transketolase	protein-coding
19-PTNLD28-TUMOR_peak_29849	chr14	34692741	34692886	+	8.77277	NA	Intergenic	Intergenic	238655	NM_138288	171546	Hs.740577	NM_138288	HPRD:16610	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase, small subunit A	protein-coding
19-PTNLD28-TUMOR_peak_68155	chr3	49760827	49760950	+	8.76645	NA	TTS (NM_153273)	TTS (NM_153273)	519	NM_013334	29925	Hs.567488	NM_013334	HPRD:13589	GMPPB	MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
19-PTNLD28-TUMOR_peak_77660	chr4	153894962	153895128	+	8.76645	NA	intron (NM_033393, intron 10 of 10)	intron (NM_033393, intron 10 of 10)	30910	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_86168	chr6	26556788	26557047	+	8.76551	NA	Intergenic	Intergenic	18345	NM_006353	10473	Hs.236774	NM_006353		HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
19-PTNLD28-TUMOR_peak_34484	chr15	74674758	74674936	+	8.76551	NA	Intergenic	Intergenic	-14766	NM_000781	1583	Hs.303980	NM_000781	HPRD:00326	CYP11A1	CYP11A|CYPXIA1|P450SCC	cytochrome P450, family 11, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_8099	chr1	169454521	169454663	+	8.76430	NA	intron (NM_006996, intron 1 of 5)	CpG	616	NM_006996	10560	Hs.30246	NM_006996	HPRD:04897	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_105521	chr9	116173611	116173721	+	8.76140	NA	promoter-TSS (NM_017443)	promoter-TSS (NM_017443)	-637	NM_017443	54107	Hs.108112	NM_017443	HPRD:06274	POLE3	CHARAC17|CHRAC17|YBL1|p17	polymerase (DNA directed), epsilon 3, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_68583	chr3	58153205	58153314	+	8.76140	NA	intron (NM_001457, intron 43 of 45)	intron (NM_001457, intron 43 of 45)	43471	NM_004944	1776	Hs.476453	NM_004944	HPRD:03764	DNASE1L3	DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease I-like 3	protein-coding
19-PTNLD28-TUMOR_peak_5446	chr1	110577487	110577735	+	8.76140	NA	intron (NR_073071, intron 1 of 21)	CpG	388	NR_073071	85369	Hs.584996	NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101778	chr8	145734833	145735049	+	8.76084	NA	exon (NM_138431, exon 1 of 5)	exon (NM_138431, exon 1 of 5)	389	NM_138431	113655	Hs.7678	NM_138431	HPRD:14003	MFSD3	-	major facilitator superfamily domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_18901	chr11	61532123	61532321	+	8.75965	NA	intron (NM_013279, intron 1 of 25)	intron (NM_013279, intron 1 of 25)	-7086	NR_026882	26070	Hs.564254	NR_026882	ENSG00000124915	DKFZP434K028	-	uncharacterized LOC26070	ncRNA
19-PTNLD28-TUMOR_peak_95943	chr7	142148363	142148464	+	8.75804	NA	Intergenic	Intergenic	-176345	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_16470	chr11	416796	416990	+	8.75544	NA	intron (NM_021805, intron 1 of 9)	CpG	504	NM_021805	59307	Hs.501624	NM_021805	HPRD:12018	SIGIRR	TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding
19-PTNLD28-TUMOR_peak_16099	chr10	125755450	125755597	+	8.75544	NA	Intergenic	Intergenic	96417	NM_015892	51363	Hs.287537	NM_014863	HPRD:12203	CHST15	BRAG|GALNAC4S-6ST	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_16337	chr10	134281434	134281628	+	8.74610	NA	Intergenic	Intergenic	22817	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_81536	chr5	111482780	111482910	+	8.74610	NA	Intergenic	Intergenic	-13378	NR_015370	114915	Hs.12082	NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27182	chr12	130738493	130738765	+	8.74610	NA	Intergenic	Intergenic	-83804	NM_004764	9271	Hs.405659	NM_004764	HPRD:10409	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi-like RNA-mediated gene silencing 1	protein-coding
19-PTNLD28-TUMOR_peak_65160	chr22	32033769	32034094	+	8.74610	NA	Intergenic	Intergenic	-7121	NM_014338	23761	Hs.420559	NM_014338	HPRD:17854	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_8513	chr1	179198533	179198849	+	8.74610	NA	5' UTR (NM_007314, exon 1 of 12)	5' UTR (NM_007314, exon 1 of 12)	128	NM_001168238	27	Hs.159472	NM_005158	HPRD:01259	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_7077	chr1	154474034	154474931	+	8.74610	NA	promoter-TSS (NM_001098475)	promoter-TSS (NM_001098475)	44	NM_001010846	126669	Hs.591481	NM_001010846	HPRD:17293	SHE	-	Src homology 2 domain containing E	protein-coding
19-PTNLD28-TUMOR_peak_1089	chr1	16826398	16826620	+	8.74610	NA	Intergenic	AluSx|SINE|Alu	-7313	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	ciliary rootlet coiled-coil, rootletin pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_16292	chr10	131934839	131935414	+	8.74610	NA	intron (NM_006541, intron 1 of 10)	CpG	487	NM_001199868	10539	Hs.42644	NM_006541	HPRD:10153	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
19-PTNLD28-TUMOR_peak_24641	chr12	56327058	56327297	+	8.74610	NA	intron (NM_201444, intron 1 of 23)	intron (NM_201444, intron 1 of 23)	1365	NM_201554	1606	Hs.524488	NM_001345	HPRD:00517	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase, alpha 80kDa	protein-coding
19-PTNLD28-TUMOR_peak_100370	chr8	120879450	120879655	+	8.74610	NA	Intergenic	Intergenic	-6343	NM_001283012	64798	Hs.112981	NM_022783	HPRD:13137	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_54536	chr2	101767161	101767268	+	8.74610	NA	intron (NM_001102426, intron 1 of 19)	CpG	632	NM_001102426	11138	Hs.442657	NM_007063	HPRD:06752	TBC1D8	AD3|HBLP1|TBC1D8A|VRP	TBC1 domain family, member 8 (with GRAM domain)	protein-coding
19-PTNLD28-TUMOR_peak_6345	chr1	145752465	145752616	+	8.74359	NA	exon (NM_001201325, exon 4 of 9)	exon (NM_001201325, exon 4 of 9)	24874	NM_001201326	5174	Hs.444751	NM_002614	HPRD:04829	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38565	chr16	70720033	70720162	+	8.74359	NA	promoter-TSS (NM_138383)	promoter-TSS (NM_138383)	-143	NM_138383	92154	Hs.432387	NM_138383	HPRD:14289	MTSS1L	ABBA-1	metastasis suppressor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_63012	chr21	28944089	28944284	+	8.74359	NA	intron (NR_049807, intron 2 of 4)	intron (NR_049807, intron 2 of 4)	-150512	NR_024357	54088	Hs.570434	NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113	long intergenic non-protein coding RNA 113	ncRNA
19-PTNLD28-TUMOR_peak_58992	chr2	235996590	235996769	+	8.74359	NA	Intergenic	Intergenic	136051	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_59133	chr2	239047196	239047344	+	8.74359	NA	promoter-TSS (NM_198582)	promoter-TSS (NM_198582)	-93	NM_198582	377007	Hs.591595	NM_198582	HPRD:13472	KLHL30	-	kelch-like family member 30	protein-coding
19-PTNLD28-TUMOR_peak_108168	chrX	47152699	47152797	+	8.74359	NA	Intergenic	HERVFH19-int|LTR|ERV1	60434	NM_004651	8237	Hs.171501	NM_004651	HPRD:02081	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_22094	chr11	129245284	129245563	+	8.74211	NA	promoter-TSS (NM_003658)	promoter-TSS (NM_003658)	-458	NM_003658	8538	Hs.591944	NM_003658	HPRD:16074	BARX2	-	BARX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_13820	chr10	62704436	62704544	+	8.74211	NA	promoter-TSS (NM_001242359)	promoter-TSS (NM_001242359)	-457	NM_014836	9886	Hs.737374	NM_014836	HPRD:06299	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70368	chr3	124801350	124801465	+	8.74211	NA	TTS (NM_001195483)	TTS (NM_001195483)	-26605	NM_020733	57493	Hs.477420	NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_20464	chr11	86511342	86511820	+	8.74211	NA	exon (NM_007173, exon 1 of 2)	exon (NM_007173, exon 1 of 2)	299	NM_001293178	11098	Hs.25338	NM_007173	HPRD:07149	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine, 23	protein-coding
19-PTNLD28-TUMOR_peak_8563	chr1	180509977	180510180	+	8.74211	NA	Intergenic	Intergenic	-18032	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_46619	chr19	1907606	1907721	+	8.74211	NA	intron (NM_079834, intron 1 of 6)	intron (NM_079834, intron 1 of 6)	2290	NM_079834	113178	Hs.144980	NM_079834	HPRD:11536	SCAMP4	SCAMP-4	secretory carrier membrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_63881	chr21	45145580	45145917	+	8.74110	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	6770	NM_003681	8566	Hs.284491	NM_003681	HPRD:01526	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
19-PTNLD28-TUMOR_peak_101689	chr8	145013718	145013870	+	8.74003	NA	promoter-TSS (NM_201384)	promoter-TSS (NM_201384)	-36	NM_201384	5339	Hs.434248	NM_000445	HPRD:03180	PLEC	EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
19-PTNLD28-TUMOR_peak_103234	chr9	42805623	42805965	+	8.73605	NA	Intergenic	TAR1|Satellite|telo	34086	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_24831	chr12	58703736	58703829	+	8.73604	NA	Intergenic	Intergenic	368337	NM_033276	91419	Hs.61188	NM_033276	HPRD:17256	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41892	chr17	44649321	44649458	+	8.73604	NA	intron (NM_001288812, intron 2 of 4).2	L2|LINE|L2	7699	NM_001288812	51326	Hs.559259	NM_016632	HPRD:17424	ARL17A	ARF1P2|ARL17P1	ADP-ribosylation factor-like 17A	protein-coding
19-PTNLD28-TUMOR_peak_46846	chr19	5293489	5293642	+	8.73604	NA	intron (NM_130854, intron 1 of 32)	CpG	47249	NM_002850	5802	Hs.744928	NM_002850	HPRD:03344	PTPRS	PTPSIGMA	protein tyrosine phosphatase, receptor type, S	protein-coding
19-PTNLD28-TUMOR_peak_23104	chr12	12748878	12748994	+	8.73604	NA	Intergenic	LTR10F|LTR|ERV1	-15831	NM_001310	1389	Hs.591156	NM_001310	HPRD:07541	CREBL2	-	cAMP responsive element binding protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_53522	chr2	74183233	74183722	+	8.73604	NA	intron (NM_080916, intron 4 of 6)	intron (NM_080916, intron 4 of 6)	25089	NR_104029	100874048	Hs.600674	NR_104029	ENSG00000237883	DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43120	chr17	66374593	66375051	+	8.73604	NA	intron (NM_001267727, intron 8 of 11)	intron (NM_001267727, intron 8 of 11)	-34942	NM_001278433	5573	Hs.280342	NM_002734	HPRD:01786	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1	protein kinase, cAMP-dependent, regulatory, type I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_18555	chr11	50777983	50778077	+	8.73604	NA	Intergenic	L1PA3|LINE|L1	409712	NR_024504	646813	Hs.684179	NR_024504		LOC646813	-	DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31809	chr14	94393237	94393367	+	8.73604	NA	promoter-TSS (NM_001207073)	promoter-TSS (NM_001207073)	-386	NM_001207074	90050	Hs.525550	NM_138344	HPRD:12636	FAM181A	C14orf152	family with sequence similarity 181, member A	protein-coding
19-PTNLD28-TUMOR_peak_57862	chr2	203026305	203026473	+	8.73604	NA	intron (NM_001277372, intron 14 of 21)	L2c|LINE|L2	76933	NM_001005782	7341	Hs.81424	NM_003352	HPRD:03554	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin-like modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_48777	chr19	36737211	36737421	+	8.73604	NA	Intergenic	Intergenic	-31330	NM_001042474	147929	Hs.596338	NM_152477	HPRD:15846	ZNF565	-	zinc finger protein 565	protein-coding
19-PTNLD28-TUMOR_peak_4390	chr1	76457343	76457483	+	8.73604	NA	Intergenic	Intergenic	-59297	NR_026546	127247	Hs.125423	NM_080868	HPRD:10671	ASB17	Asb-17	ankyrin repeat and SOCS box containing 17	protein-coding
19-PTNLD28-TUMOR_peak_94246	chr7	99571388	99571543	+	8.73604	NA	intron (NM_001185, intron 1 of 3)	AluSz|SINE|Alu	2270	NM_001185	563	Hs.546239	NM_001185	HPRD:01910	AZGP1	ZA2G|ZAG	alpha-2-glycoprotein 1, zinc-binding	protein-coding
19-PTNLD28-TUMOR_peak_20685	chr11	95245628	95245757	+	8.73604	NA	Intergenic	MIRb|SINE|MIR	277262	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_39362	chr16	88625556	88625679	+	8.73604	NA	Intergenic	MER5A|DNA|hAT-Charlie	-11172	NM_144604	124245	Hs.93670	NM_144604	HPRD:11232	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
19-PTNLD28-TUMOR_peak_97516	chr8	21641977	21642076	+	8.73604	NA	intron (NM_001495, intron 1 of 8)	intron (NM_001495, intron 1 of 8)	4320	NM_001495	2675	Hs.441202	NM_001495	HPRD:11801	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_5600	chr1	113243476	113243712	+	8.73603	NA	TTS (NM_001130079)	TTS (NM_001130079)	6084	NM_001042679	389	Hs.502659	NM_175744	HPRD:01322	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
19-PTNLD28-TUMOR_peak_86151	chr6	26458442	26458591	+	8.73586	NA	intron (NM_001197233, intron 1 of 6)	CpG	384	NM_001197233	11120	Hs.159028	NM_007049	HPRD:12544	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin, subfamily 2, member A1	protein-coding
19-PTNLD28-TUMOR_peak_49998	chr19	51297677	51297981	+	8.73337	NA	exon (NM_033068, exon 9 of 11)	exon (NM_033068, exon 9 of 11)	4157	NM_033068	93650	Hs.293394	NM_033068	HPRD:06964	ACPT	-	acid phosphatase, testicular	protein-coding
19-PTNLD28-TUMOR_peak_30854	chr14	66846916	66847134	+	8.73026	NA	Intergenic	Intergenic	-106064	NR_110308	440184	Hs.412138	NM_001004331	HPRD:14708	LINC00238	C14orf53|NCRNA00238	long intergenic non-protein coding RNA 238	ncRNA
19-PTNLD28-TUMOR_peak_105249	chr9	111206196	111206301	+	8.73026	NA	Intergenic	Intergenic	412027	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_53388	chr2	71164443	71164609	+	8.73026	NA	intron (NM_001692, intron 1 of 13)	intron (NM_001692, intron 1 of 13)	1528	NM_001692	525	Hs.64173	NM_001692	HPRD:01887	ATP6V1B1	ATP6B1|RTA1B|VATB|VMA2|VPP3	ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1	protein-coding
19-PTNLD28-TUMOR_peak_14234	chr10	73519159	73519330	+	8.72925	NA	intron (NM_022153, intron 3 of 6)	AluJo|SINE|Alu	14093	NM_022153	64115	Hs.47382	NM_022153	HPRD:15160	C10orf54	B7-H5|B7H5|GI24|PP2135|SISP1	chromosome 10 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_15597	chr10	112114198	112114365	+	8.72925	NA	Intergenic	Intergenic	-49574	NM_005871	10285	Hs.632093	NM_005871		SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80847	chr5	77657174	77657363	+	8.72925	NA	promoter-TSS (NR_105014)	promoter-TSS (NR_105014)	-903	NR_105014	728769	Hs.586193	NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75452	chr4	57940953	57941218	+	8.72925	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-34843	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22064	chr11	128735531	128735652	+	8.72671	NA	intron (NM_153766, intron 1 of 2)	intron (NM_153766, intron 1 of 2)	1677	NM_153767	3758	Hs.527830	NM_000220	HPRD:08981	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_42446	chr17	54838879	54838999	+	8.72671	NA	Intergenic	MER102b|DNA|hAT-Charlie	72317	NM_001085430	339210	Hs.658949	NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_1501	chr1	24262746	24262844	+	8.72671	NA	Intergenic	SVA_D|Other|Other	7235	NR_039615	100616492		NR_039615	miRBase:MI0016756	MIR378F	-	microRNA 378f	ncRNA
19-PTNLD28-TUMOR_peak_54770	chr2	109306523	109306668	+	8.72671	NA	Intergenic	L1MD2|LINE|L1	-29342	NM_006267	5903	Hs.199561	NM_006267	HPRD:03111	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_75451	chr4	57931418	57931657	+	8.72671	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-44391	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70350	chr3	124646450	124646625	+	8.72671	NA	exon (NM_033049, exon 2 of 12)	exon (NM_033049, exon 2 of 12)	7058	NM_033049	56667	Hs.5940	NM_033049	HPRD:10101	MUC13	DRCC1|MUC-13	mucin 13, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_53760	chr2	85294044	85294169	+	8.72671	NA	Intergenic	Intergenic	-66477	NM_031283	83439	Hs.516297	NM_031283	HPRD:06874	TCF7L1	TCF-3|TCF3	transcription factor 7-like 1 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_42250	chr17	48565316	48565453	+	8.72671	NA	Intergenic	Intergenic	9194	NM_018346	55316	Hs.8033	NM_018346	HPRD:07737	RSAD1	-	radical S-adenosyl methionine domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27713	chr13	31384386	31384613	+	8.72671	NA	non-coding (NR_047012, exon 2 of 2)	non-coding (NR_047012, exon 2 of 2)	7156	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
19-PTNLD28-TUMOR_peak_32220	chr14	103979377	103979533	+	8.72671	NA	Intergenic	Intergenic	9741	NM_001823	1152	Hs.173724	NM_001823	HPRD:00423	CKB	B-CK|BCK|CKBB|HEL-211|HEL-S-29	creatine kinase, brain	protein-coding
19-PTNLD28-TUMOR_peak_50742	chr2	634667	634997	+	8.72671	NA	Intergenic	Intergenic	42607	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_7869	chr1	165042788	165042878	+	8.72671	NA	Intergenic	Intergenic	282645	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_40282	chr17	15366845	15366986	+	8.72671	NA	intron (NM_001204477, intron 1 of 3)	intron (NM_001204477, intron 1 of 3)	4010	NM_001204477	284040	Hs.164595	NM_173622	HPRD:08208	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_58082	chr2	208481744	208481930	+	8.72671	NA	intron (NM_145280, intron 3 of 3)	intron (NM_145280, intron 3 of 3)	7859	NM_145280	151194	Hs.664764	NM_145280	HPRD:14090	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase like 21A	protein-coding
19-PTNLD28-TUMOR_peak_86929	chr6	34295463	34295673	+	8.72671	NA	intron (NM_001202470, intron 6 of 8)	LTR13A|LTR|ERVK	64889	NM_006703	11165	Hs.188882	NM_006703		NUDT3	DIPP|DIPP-1|DIPP1	nudix (nucleoside diphosphate linked moiety X)-type motif 3	protein-coding
19-PTNLD28-TUMOR_peak_44476	chr18	9055741	9055874	+	8.72671	NA	Intergenic	Intergenic	-46821	NM_021074	4729	Hs.464572	NM_021074	HPRD:02757	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_29001	chr13	108922009	108922636	+	8.72671	NA	exon (NM_001145645, exon 1 of 5)	exon (NM_001145645, exon 1 of 5)	345	NM_006573	10673	Hs.525157	NM_006573	HPRD:04914	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|ZTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding
19-PTNLD28-TUMOR_peak_32618	chr15	25123271	25123656	+	8.72671	NA	intron (NM_022805, intron 1 of 11)	CpG	21765	NM_022805	6638	Hs.555970	NM_003097	HPRD:01653	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
19-PTNLD28-TUMOR_peak_84456	chr5	178686287	178686429	+	8.72671	NA	intron (NM_021599, intron 3 of 10)	L2b|LINE|L2	86073	NM_021599	9509	Hs.23871	NM_014244	HPRD:05173	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif, 2	protein-coding
19-PTNLD28-TUMOR_peak_10161	chr1	221067173	221067792	+	8.72671	NA	Intergenic	CpG	-14000	NR_046901	100873924	Hs.645593	NR_046901		HLX-AS1	-	HLX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37171	chr16	29836585	29836824	+	8.72407	NA	intron (NM_005115, intron 1 of 14)	intron (NM_005115, intron 1 of 14)	4989	NM_005115	9961	Hs.632177	NM_005115	HPRD:05475	MVP	LRP|VAULT1	major vault protein	protein-coding
19-PTNLD28-TUMOR_peak_20089	chr11	75274214	75274460	+	8.72407	NA	intron (NM_001235, intron 1 of 4)	intron (NM_001235, intron 1 of 4)	1236	NM_001235	871	Hs.596449	NM_001235	HPRD:02968	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_12045	chr10	12371153	12371263	+	8.72167	NA	Intergenic	AluSx|SINE|Alu	-20375	NM_020397	57118	Hs.659517	NM_020397	HPRD:06409	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin-dependent protein kinase ID	protein-coding
19-PTNLD28-TUMOR_peak_38676	chr16	73054427	73054551	+	8.72083	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	27785	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_24381	chr12	53049089	53049240	+	8.72083	NA	Intergenic	Intergenic	-3205	NM_000423	3849	Hs.707	NM_000423	HPRD:02560	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
19-PTNLD28-TUMOR_peak_497	chr1	8202021	8202219	+	8.72083	NA	Intergenic	AluSc|SINE|Alu	-115727	NM_018948	54206	Hs.605445	NM_018948	HPRD:09218	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_89194	chr6	115325504	115325622	+	8.72083	NA	Intergenic	Intergenic	-941522	NM_153612	222537	Hs.645477	NM_153612	HPRD:13674	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_13256	chr10	44669020	44669135	+	8.72083	NA	Intergenic	Intergenic	-119121	NM_001258000	100130539	Hs.694626	NM_001258000		LOC100130539	-	uncharacterized LOC100130539	protein-coding
19-PTNLD28-TUMOR_peak_56247	chr2	150056613	150056817	+	8.72083	NA	intron (NM_177964, intron 3 of 6)	intron (NM_177964, intron 3 of 6)	-129784	NM_001195685	130574	Hs.21929	NM_194317	HPRD:14676	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_59071	chr2	238164007	238164118	+	8.72083	NA	Intergenic	Intergenic	158788	NM_057167	1293	Hs.233240	NM_004369	HPRD:00371	COL6A3	-	collagen, type VI, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_59800	chr20	10838187	10838322	+	8.72083	NA	Intergenic	Intergenic	51666	NR_109866	101929413	Hs.385604	NR_109866	ENSG00000232900	LOC101929413	-	uncharacterized LOC101929413	ncRNA
19-PTNLD28-TUMOR_peak_75704	chr4	75858116	75858403	+	8.72083	NA	promoter-TSS (NM_015393)	promoter-TSS (NM_015393)	-26	NM_015393	25849	Hs.105460	NM_015393	HPRD:08529	PARM1	Cipar1|DKFZP564O0823|PARM-1|WSC4	prostate androgen-regulated mucin-like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40289	chr17	15512251	15512557	+	8.72083	NA	intron (NM_001282540, intron 5 of 12)	intron (NM_001282540, intron 5 of 12)	10614	NM_006382	374286	Hs.548021	NM_006382	HPRD:16699	CDRT1	C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2	CMT1A duplicated region transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_16034	chr10	123906478	123906704	+	8.72083	NA	intron (NM_206862, intron 7 of 22)	L1MC3|LINE|L1	-16350	NM_206860	10579	Hs.501252	NM_006997	HPRD:05600	TACC2	AZU-1|ECTACC	transforming, acidic coiled-coil containing protein 2	protein-coding
19-PTNLD28-TUMOR_peak_52699	chr2	48656114	48656289	+	8.72083	NA	Intergenic	AluJb|SINE|Alu	-11707	NM_001135629	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_14734	chr10	88408988	88409122	+	8.72083	NA	Intergenic	Intergenic	-5259	NM_001030015	94233	Hs.283922	NM_033282	HPRD:05977	OPN4	MOP	opsin 4	protein-coding
19-PTNLD28-TUMOR_peak_27092	chr12	127067920	127068157	+	8.72083	NA	Intergenic	Intergenic	106826	NR_110035	100996671	Hs.121392	NR_110034		LOC100996671	-	uncharacterized LOC100996671	ncRNA
19-PTNLD28-TUMOR_peak_105209	chr9	110383265	110383400	+	8.72083	NA	Intergenic	Intergenic	-131285	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_59119	chr2	238773747	238773867	+	8.72083	NA	intron (NM_005855, intron 1 of 2)	intron (NM_005855, intron 1 of 2)	5620	NM_005855	10267	Hs.471783	NM_005855	HPRD:05515	RAMP1	-	receptor (G protein-coupled) activity modifying protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16619	chr11	1903816	1903961	+	8.72083	NA	intron (NM_001289005, intron 3 of 10)	intron (NM_001289005, intron 3 of 10)	11734	NM_001013255	4046	Hs.56729	NM_002339	HPRD:01083	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
19-PTNLD28-TUMOR_peak_77872	chr4	160529129	160529265	+	8.72083	NA	Intergenic	Intergenic	340199	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_58522	chr2	220424435	220424534	+	8.72083	NA	intron (NM_001173431, intron 8 of 13)	MER46C|DNA|TcMar-Tigger	-10615	NR_036082	100423039		NR_036082	miRBase:MI0014152	MIR3132	-	microRNA 3132	ncRNA
19-PTNLD28-TUMOR_peak_84173	chr5	174824796	174825019	+	8.72083	NA	Intergenic	L1PA2|LINE|L1	46256	NM_000794	1812	Hs.2624	NM_000794	HPRD:00538	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
19-PTNLD28-TUMOR_peak_44259	chr18	2112568	2112955	+	8.72083	NA	Intergenic	Intergenic	458728	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_100376	chr8	120919141	120919291	+	8.72083	NA	intron (NM_001283012, intron 1 of 6)	intron (NM_001283012, intron 1 of 6)	33321	NM_022783	64798	Hs.112981	NM_022783	HPRD:13137	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR-interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_25676	chr12	96027130	96027317	+	8.72083	NA	Intergenic	Intergenic	-15808	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_55642	chr2	130134329	130134562	+	8.72083	NA	Intergenic	Intergenic	-102981	NR_122040	151121	Hs.531687	NM_001033657	ENSG00000204460	LOC151121	-	uncharacterized LOC151121	ncRNA
19-PTNLD28-TUMOR_peak_55969	chr2	137381964	137382164	+	8.72083	NA	Intergenic	Intergenic	-366398	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_92345	chr7	45175832	45175972	+	8.72083	NA	Intergenic	MER90|LTR|ERV1	-21465	NM_005856	10268	Hs.25691	NM_005856	HPRD:05517	RAMP3	-	receptor (G protein-coupled) activity modifying protein 3	protein-coding
19-PTNLD28-TUMOR_peak_18522	chr11	48126021	48126149	+	8.72083	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-112277	NM_001005470	119765	Hs.553566	NM_001005470	HPRD:14960	OR4B1	OR11-106|OST208	olfactory receptor, family 4, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_105791	chr9	122944467	122944768	+	8.72083	NA	Intergenic	MIRb|SINE|MIR	62711	NR_029604	406939		NR_029604	miRBase:MI0000262	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
19-PTNLD28-TUMOR_peak_16599	chr11	1703579	1703883	+	8.72083	NA	TTS (NR_026642)	TTS (NR_026642)	3128	NR_026642	100132464	Hs.117797	NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_37156	chr16	29733056	29733164	+	8.72083	NA	Intergenic	LTR13|LTR|ERVK	24230	NM_175900	283897	Hs.331095	NM_175900	HPRD:08183	C16orf54	-	chromosome 16 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_44716	chr18	13456361	13456516	+	8.72083	NA	intron (NM_181482, intron 4 of 5)	intron (NM_181482, intron 4 of 5)	-3508	NR_049822	100847080		NR_049822		MIR5190	-	microRNA 5190	ncRNA
19-PTNLD28-TUMOR_peak_22751	chr12	6484639	6484841	+	8.72002	NA	promoter-TSS (NM_001159576)	promoter-TSS (NM_001159576)	165	NM_001038	6337	Hs.591047	NM_001038	HPRD:02575	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel, non-voltage-gated 1 alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_74295	chr4	7972160	7972372	+	8.71434	NA	intron (NM_001130085, intron 17 of 17)	intron (NM_001130085, intron 17 of 17)	-30613	NM_001134647	60312	Hs.529369	NM_021638	HPRD:09747	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_96108	chr7	144107443	144107709	+	8.71302	NA	promoter-TSS (NM_001080413)	promoter-TSS (NM_001080413)	-256	NM_001080413	135935	Hs.558628	NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
19-PTNLD28-TUMOR_peak_20526	chr11	89712520	89712799	+	8.71302	NA	Intergenic	Intergenic	10987	NM_001136486	120146	Hs.454490	NM_001136486		TRIM64	C11orf28|TRIM64A	tripartite motif containing 64	protein-coding
19-PTNLD28-TUMOR_peak_105665	chr9	118135420	118135614	+	8.71302	NA	intron (NM_017418, intron 4 of 7)	intron (NM_017418, intron 4 of 7)	231420	NM_017418	50514	Hs.148841	NM_017418	HPRD:16068	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_47104	chr19	9096925	9097405	+	8.71302	NA	Intergenic	Intergenic	-5147	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	mucin 16, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_25013	chr12	65212178	65212366	+	8.71302	NA	Intergenic	AluSc5|SINE|Alu	-6080	NM_015279	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family, member 30	protein-coding
19-PTNLD28-TUMOR_peak_16922	chr11	7695201	7695586	+	8.71207	NA	promoter-TSS (NM_016229)	promoter-TSS (NM_016229)	-572	NM_016229	51700	Hs.414362	NM_016229	HPRD:06435	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_49082	chr19	40969649	40969751	+	8.71207	NA	intron (NM_000713, intron 1 of 4)	AluSq2|SINE|Alu	2025	NM_000713	645	Hs.515785	NM_000713	HPRD:02967	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B (flavin reductase (NADPH))	protein-coding
19-PTNLD28-TUMOR_peak_96195	chr7	148958517	148958664	+	8.71207	NA	promoter-TSS (NM_001195220)	promoter-TSS (NM_001195220)	-672	NM_001195220	100289678	Hs.490512	NM_001195220	ENSG00000204946	ZNF783	-	zinc finger family member 783	protein-coding
19-PTNLD28-TUMOR_peak_41440	chr17	39678647	39678930	+	8.71207	NA	Intergenic	Intergenic	-3518	NM_002275	3866	Hs.654570	NM_002275	HPRD:01009	KRT15	CK15|K15|K1CO	keratin 15	protein-coding
19-PTNLD28-TUMOR_peak_51446	chr2	20424730	20424829	+	8.71207	NA	5' UTR (NM_002997, exon 1 of 5)	5' UTR (NM_002997, exon 1 of 5)	148	NM_002997	6382	Hs.224607	NM_002997	HPRD:01718	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
19-PTNLD28-TUMOR_peak_37713	chr16	49730801	49731033	+	8.71207	NA	intron (NM_015069, intron 3 of 7)	intron (NM_015069, intron 3 of 7)	125732	NM_015069	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_87555	chr6	43043736	43043948	+	8.71155	NA	promoter-TSS (NM_152882)	promoter-TSS (NM_152882)	-164	NM_152882	5754	Hs.90572	NM_002821	HPRD:03534	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_75779	chr4	77558978	77559126	+	8.71155	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	64331	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_54131	chr2	92245586	92245780	+	8.71155	NA	Intergenic	MER54A|LTR|ERVL	116524	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_12250	chr10	18949222	18949325	+	8.71060	NA	intron (NM_178815, intron 1 of 5)	intron (NM_178815, intron 1 of 5)	960	NM_178815	221079	Hs.25362	NM_178815	HPRD:12328	ARL5B	ARL8	ADP-ribosylation factor-like 5B	protein-coding
19-PTNLD28-TUMOR_peak_21251	chr11	113534427	113534653	+	8.71060	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	42555	NR_110047	80975	Hs.46720	NM_030770	HPRD:05995	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding
19-PTNLD28-TUMOR_peak_47249	chr19	10800963	10801271	+	8.71060	NA	3' UTR (NM_012218, exon 20 of 20)	3' UTR (NM_012218, exon 20 of 20)	-10995	NM_031209	81890	Hs.631638	NM_031209	HPRD:17943	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_61758	chr20	48726957	48727120	+	8.71060	NA	intron (NM_001257398, intron 1 of 4)	intron (NM_001257398, intron 1 of 4)	2697	NM_001257399	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
19-PTNLD28-TUMOR_peak_60732	chr20	34251905	34252246	+	8.71060	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	784	NR_037188	8904	Hs.246413	NM_003915	HPRD:05014	CPNE1	COPN1|CPN1	copine I	protein-coding
19-PTNLD28-TUMOR_peak_37797	chr16	51186309	51186476	+	8.70685	NA	Intergenic	CpG-9270	-1209	NM_002968	6299	Hs.135787	NM_002968	HPRD:03742	SALL1	HEL-S-89|HSAL1|Sal-1|TBS|ZNF794	spalt-like transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_51946	chr2	30462913	30463070	+	8.70685	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	8594	NM_030915	81606	Hs.567598	NM_030915	HPRD:13965	LBH	-	limb bud and heart development	protein-coding
19-PTNLD28-TUMOR_peak_65467	chr22	38349331	38349710	+	8.70685	NA	promoter-TSS (NM_021974)	promoter-TSS (NM_021974)	134	NM_032561	84645	Hs.517612	NM_032561	HPRD:12799	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
19-PTNLD28-TUMOR_peak_41486	chr17	40021031	40021421	+	8.70685	NA	exon (NM_018143, exon 1 of 2)	exon (NM_018143, exon 1 of 2)	403	NM_018143	55175	Hs.592134	NM_018143	HPRD:13924	KLHL11	-	kelch-like family member 11	protein-coding
19-PTNLD28-TUMOR_peak_28421	chr13	67805151	67805338	+	8.70685	NA	promoter-TSS (NM_203487)	promoter-TSS (NM_203487)	-776	NM_203487	5101	Hs.654709	NM_020403	HPRD:04661	PCDH9	-	protocadherin 9	protein-coding
19-PTNLD28-TUMOR_peak_87355	chr6	40474841	40474943	+	8.70685	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	80234	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_71667	chr3	149797253	149797409	+	8.70685	NA	Intergenic	ORSL-2a|DNA|hAT-Tip100	108265	NR_036538	646903	Hs.632559	NR_036538		LOC646903	-	uncharacterized LOC646903	ncRNA
19-PTNLD28-TUMOR_peak_77712	chr4	154671436	154671592	+	8.70685	NA	intron (NM_173662, intron 2 of 8)	intron (NM_173662, intron 2 of 8)	9873	NM_173662	285533	Hs.388364	NM_173662	HPRD:15262	RNF175	-	ring finger protein 175	protein-coding
19-PTNLD28-TUMOR_peak_37756	chr16	50402519	50402883	+	8.70685	NA	5' UTR (NM_013263, exon 1 of 17)	5' UTR (NM_013263, exon 1 of 17)	144	NM_013263	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_66986	chr3	16926804	16927181	+	8.70685	NA	intron (NM_001144382, intron 3 of 7)	intron (NM_001144382, intron 3 of 7)	540	NM_001144382	23228	Hs.741267	NM_015184	HPRD:07147	PLCL2	PLCE2	phospholipase C-like 2	protein-coding
19-PTNLD28-TUMOR_peak_15814	chr10	117586772	117587064	+	8.70685	NA	intron (NM_207303, intron 27 of 28)	intron (NM_207303, intron 27 of 28)	444901	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_53973	chr2	87983095	87983341	+	8.70592	NA	Intergenic	Intergenic	53939	NR_039636	100616341		NR_039636	miRBase:MI0016777	MIR4435-2	-	microRNA 4435-2	ncRNA
19-PTNLD28-TUMOR_peak_47045	chr19	8376871	8376975	+	8.70592	NA	intron (NM_005001, intron 3 of 3)	intron (NM_005001, intron 3 of 3)	-3683	NM_001165895	51293	Hs.558499	NM_016579	HPRD:05929	CD320	8D6|8D6A|TCBLR	CD320 molecule	protein-coding
19-PTNLD28-TUMOR_peak_43260	chr17	71289229	71289416	+	8.70361	NA	intron (NM_012121, intron 1 of 1)	L2a|LINE|L2	18821	NM_012121	23580	Hs.3903	NM_012121	HPRD:08383	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
19-PTNLD28-TUMOR_peak_102807	chr9	34662660	34662838	+	8.70361	NA	promoter-TSS (NM_006664)	promoter-TSS (NM_006664)	-60	NM_006664	10850	Hs.648124	NM_006664	HPRD:05321	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	chemokine (C-C motif) ligand 27	protein-coding
19-PTNLD28-TUMOR_peak_3123	chr1	45258868	45259073	+	8.70361	NA	Intergenic	Intergenic	-5544	NM_153274	266675	Hs.302513	NM_153274	HPRD:09549	BEST4	VMD2L2	bestrophin 4	protein-coding
19-PTNLD28-TUMOR_peak_55741	chr2	131863546	131864160	+	8.70361	NA	intron (NR_049791, intron 1 of 6)	intron (NR_049791, intron 1 of 6)	1433	NM_017958	55041	Hs.469944	NM_017958	HPRD:15144	PLEKHB2	EVT2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
19-PTNLD28-TUMOR_peak_84354	chr5	177240183	177240407	+	8.70301	NA	Intergenic	Intergenic	-32790	NM_173663	285596	Hs.368516	NM_173663	HPRD:14870	FAM153A	NY-REN-7	family with sequence similarity 153, member A	protein-coding
19-PTNLD28-TUMOR_peak_86294	chr6	28105106	28105245	+	8.70301	NA	promoter-TSS (NR_103455)	promoter-TSS (NR_103455)	-81	NR_103456	100129195	Hs.659413	NR_103455	ENSG00000269293	ZSCAN16-AS1	-	ZSCAN16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45606	chr18	45854991	45855139	+	8.70301	NA	Intergenic	MIR3|SINE|MIR	-191385	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_84527	chr5	179719648	179719811	+	8.70255	NA	promoter-TSS (NM_001135044)	promoter-TSS (NM_001135044)	-658	NM_139068	5601	Hs.484371	NM_002752	HPRD:04206	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_15132	chr10	99496763	99497049	+	8.69458	NA	promoter-TSS (NM_144588)	promoter-TSS (NM_144588)	28	NM_001174120	118813	Hs.744075	NM_144588	HPRD:15735	ZFYVE27	PROTRUDIN|SPG33	zinc finger, FYVE domain containing 27	protein-coding
19-PTNLD28-TUMOR_peak_38431	chr16	68573668	68573862	+	8.69458	NA	intron (NM_133458, intron 1 of 3)	intron (NM_133458, intron 1 of 3)	104	NM_133458	146198	Hs.461074	NM_133458	HPRD:18729	ZFP90	FIK|NK10|ZNF756	ZFP90 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_67176	chr3	23988934	23989254	+	8.69458	NA	intron (NM_001145425, intron 1 of 7)	L3|LINE|CR1	1482	NM_001145425	9975	Hs.37288	NM_005126	HPRD:03809	NR1D2	BD73|EAR-1R|RVR	nuclear receptor subfamily 1, group D, member 2	protein-coding
19-PTNLD28-TUMOR_peak_32919	chr15	32700270	32700393	+	8.69458	NA	intron (NR_026858, intron 4 of 4).2	intron (NR_026858, intron 4 of 4).2	-4838	NM_001282493	653125		NM_001282493		GOLGA8K	-	golgin A8 family, member K	protein-coding
19-PTNLD28-TUMOR_peak_89375	chr6	126101937	126102069	+	8.69458	NA	promoter-TSS (NM_001199619)	promoter-TSS (NM_001199619)	-304	NM_001199619	135112	Hs.171426	NM_181782	HPRD:14814	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
19-PTNLD28-TUMOR_peak_31147	chr14	71610198	71610514	+	8.69458	NA	Intergenic	Intergenic	236234	NM_014982	22990	Hs.446559	NM_014982	HPRD:10139	PCNX	PCNXL1|pecanex	pecanex homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_46749	chr19	3713407	3713546	+	8.69458	NA	intron (NM_001267560, intron 1 of 20)	L1MD3|LINE|L1	5141	NM_001267560	27134	Hs.25527	NM_014428	HPRD:18194	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
19-PTNLD28-TUMOR_peak_55748	chr2	131967227	131967422	+	8.69458	NA	Intergenic	REP522|Satellite|telo	-8600	NM_001083538	445582	Hs.686146	NM_001004054	HPRD:12329	POTEE	A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma	POTE ankyrin domain family, member E	protein-coding
19-PTNLD28-TUMOR_peak_37405	chr16	32276524	32276679	+	8.69458	NA	Intergenic	BSR/Beta|Satellite|Satellite	11956	NR_110898	729264	Hs.513537	NM_001243722		TP53TG3D	TP53TG3|TP53TG3B|TP53TG3C	TP53 target 3D	protein-coding
19-PTNLD28-TUMOR_peak_45507	chr18	43987591	43987686	+	8.69458	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	73451	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_105334	chr9	112319730	112319998	+	8.68947	NA	Intergenic	Intergenic	-59271	NM_001145368	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_101793	chr8	145911097	145911531	+	8.68947	NA	Intergenic	CpG	69656	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
19-PTNLD28-TUMOR_peak_29321	chr14	20929174	20929358	+	8.68739	NA	intron (NM_144568, intron 1 of 6)	CpG	505	NM_144568	90809	Hs.7001	NM_144568	HPRD:12660	TMEM55B	C14orf9	transmembrane protein 55B	protein-coding
19-PTNLD28-TUMOR_peak_65331	chr22	36729222	36729392	+	8.68739	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-46354	NR_106877	102465491		NR_106877		MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19-PTNLD28-TUMOR_peak_107106	chrUn_gl000220	97256	97397	+	8.68569	NA	non-coding (NR_038958, exon 1 of 7)	non-coding (NR_038958, exon 1 of 7)	197	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
19-PTNLD28-TUMOR_peak_105021	chr9	103352014	103352129	+	8.68503	NA	Intergenic	Intergenic	11710	NM_001018116	347273	Hs.99004	NM_001018116	HPRD:18599	MURC	CAVIN4|cavin-4	muscle-related coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_83612	chr5	159615686	159615964	+	8.68503	NA	intron (NM_001130958, intron 1 of 6)	intron (NM_001130958, intron 1 of 6)	1451	NM_001130958	2172	Hs.519719	NM_001445	HPRD:02689	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6, ileal	protein-coding
19-PTNLD28-TUMOR_peak_104323	chr9	89563479	89563575	+	8.68287	NA	promoter-TSS (NR_049794)	promoter-TSS (NR_049794)	-86	NR_049794	100506834	Hs.553987	NR_049794	ENSG00000226237	LOC100506834	-	uncharacterized LOC100506834	ncRNA
19-PTNLD28-TUMOR_peak_78839	chr5	9547920	9548015	+	8.68287	NA	promoter-TSS (NR_003689)	promoter-TSS (NR_003689)	-972	NR_003689	100113384		NR_003689		SNORD123	-	small nucleolar RNA, C/D box 123	snoRNA
19-PTNLD28-TUMOR_peak_52648	chr2	47419634	47419775	+	8.68217	NA	non-coding (NR_110208, exon 5 of 5)	non-coding (NR_110208, exon 5 of 5)	-15964	NM_001743	805	Hs.468442	NM_001743	HPRD:00242	CALM2	CAMII|PHKD|PHKD2	calmodulin 2 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_82771	chr5	141223232	141223374	+	8.68217	NA	Intergenic	Intergenic	22464	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_36155	chr16	9184924	9185052	+	8.68217	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-549	NM_014117	29035	Hs.221497	NM_014117		C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
19-PTNLD28-TUMOR_peak_87233	chr6	37751596	37751807	+	8.68198	NA	Intergenic	Intergenic	-35606	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_71226	chr3	139191646	139191787	+	8.68198	NA	intron (NM_004164, intron 1 of 3)	intron (NM_004164, intron 1 of 3)	3636	NM_004164	5948	Hs.655516	NM_004164	HPRD:07184	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2, cellular	protein-coding
19-PTNLD28-TUMOR_peak_41549	chr17	40719421	40719982	+	8.68198	NA	intron (NM_198205, intron 2 of 6)	intron (NM_198205, intron 2 of 6)	623	NM_198204	6945	Hs.383019	NM_170607	HPRD:04278	MLX	MAD7|MXD7|TCFL4|bHLHd13	MLX, MAX dimerization protein	protein-coding
19-PTNLD28-TUMOR_peak_87097	chr6	36514819	36515070	+	8.68198	NA	intron (NM_007271, intron 1 of 13)	intron (NM_007271, intron 1 of 13)	303	NM_007271	11329	Hs.409578	NM_007271	HPRD:09511	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
19-PTNLD28-TUMOR_peak_52392	chr2	43286741	43286957	+	8.68000	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-20167	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_31027	chr14	69726307	69726755	+	8.68000	NA	promoter-TSS (NM_001168368)	promoter-TSS (NM_001168368)	-150	NM_020692	57452	Hs.21035	NM_020692	HPRD:13562	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
19-PTNLD28-TUMOR_peak_24247	chr12	51780204	51780433	+	8.68000	NA	intron (NM_007210, intron 2 of 11)	intron (NM_007210, intron 2 of 11)	-4783	NM_001267615	9498	Hs.4749	NM_004858	HPRD:05430	SLC4A8	NBC3|NDCBE	solute carrier family 4, sodium bicarbonate cotransporter, member 8	protein-coding
19-PTNLD28-TUMOR_peak_62651	chr20	62687228	62687504	+	8.68000	NA	Intergenic	Intergenic	-1073	NM_198723	6919	Hs.505004	NM_003195	HPRD:16069	TCEA2	TFIIS	transcription elongation factor A (SII), 2	protein-coding
19-PTNLD28-TUMOR_peak_9688	chr1	206084041	206084205	+	8.68000	NA	Intergenic	AluJo|SINE|Alu	-54317	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_2840	chr1	41914145	41914317	+	8.68000	NA	Intergenic	L2b|LINE|L2	36113	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_46107	chr18	60985368	60985570	+	8.68000	NA	exon (NM_000633, exon 2 of 3)	exon (NM_000633, exon 2 of 3)	1144	NM_000633	596	Hs.150749	NM_000633	HPRD:01045	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
19-PTNLD28-TUMOR_peak_17645	chr11	22043311	22043582	+	8.67943	NA	Intergenic	L1PA2|LINE|L1	-171276	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_47989	chr19	18076706	18076822	+	8.67943	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	14653	NM_002248	3780	Hs.158173	NM_002248		KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding
19-PTNLD28-TUMOR_peak_35278	chr15	92433937	92434125	+	8.67943	NA	intron (NM_013272, intron 1 of 9)	intron (NM_013272, intron 1 of 9)	37093	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_101941	chr9	1232398	1232511	+	8.67943	NA	Intergenic	Intergenic	181834	NM_181872	10655	Hs.59506	NM_006557	HPRD:16079	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_5256	chr1	105392221	105392465	+	8.67943	NA	Intergenic	L1HS|LINE|L1	776698	NR_033990	100129138	Hs.514487	NR_033990	ENSG00000215869	LOC100129138	-	THAP domain containing, apoptosis associated protein 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89628	chr6	137818885	137819035	+	8.67943	NA	Intergenic	CpG	-3429	NM_175747	167826	Hs.195398	NM_175747	HPRD:17662	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_69113	chr3	75147037	75147142	+	8.67943	NA	Intergenic	L1PA2|LINE|L1	-116538	NR_049831	100846999		NR_049831		MIR4444-2	-	microRNA 4444-2	ncRNA
19-PTNLD28-TUMOR_peak_79432	chr5	34526921	34527224	+	8.67943	NA	Intergenic	Intergenic	-129361	NM_015577	26064	Hs.431400	NM_015577	HPRD:09416	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
19-PTNLD28-TUMOR_peak_59695	chr20	6750689	6750804	+	8.67943	NA	intron (NM_001200, intron 1 of 2)	CpG	2001	NM_001200	650	Hs.73853	NM_001200	HPRD:00206	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
19-PTNLD28-TUMOR_peak_69821	chr3	112457368	112457470	+	8.67943	NA	intron (NR_110017, intron 4 of 4)	intron (NR_110017, intron 4 of 4)	10747	NR_110017	101929694	Hs.385630	NR_110017	ENSG00000240893	LOC101929694	-	uncharacterized LOC101929694	ncRNA
19-PTNLD28-TUMOR_peak_30586	chr14	59773642	59773797	+	8.67943	NA	intron (NM_001270520, intron 3 of 24)	intron (NM_001270520, intron 3 of 24)	43560	NM_014992	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_85365	chr6	11650342	11650472	+	8.67943	NA	Intergenic	Intergenic	111947	NM_001100829	100113407	Hs.146317	NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_36191	chr16	9741921	9742228	+	8.67943	NA	Intergenic	Intergenic	-83826	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_4688	chr1	87615553	87615658	+	8.67943	NA	intron (NR_026989, intron 2 of 2)	intron (NR_026989, intron 2 of 2)	17996	NR_026985	339524	Hs.306423	NM_207357	HPRD:14169	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
19-PTNLD28-TUMOR_peak_33849	chr15	61521390	61521498	+	8.67943	NA	promoter-TSS (NM_134261)	promoter-TSS (NM_134261)	58	NM_134261	6095	Hs.560343	NM_002943	HPRD:02896	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR-related orphan receptor A	protein-coding
19-PTNLD28-TUMOR_peak_106857	chr9	140353748	140353876	+	8.67943	NA	promoter-TSS (NM_001178064)	promoter-TSS (NM_001178064)	-26	NM_001130969	26012	Hs.455336	NM_015537	HPRD:10485	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
19-PTNLD28-TUMOR_peak_93497	chr7	76068927	76069028	+	8.67754	NA	intron (NM_007155, intron 6 of 8)	AluJb|SINE|Alu	14705	NM_001110354	7784	Hs.656137	NM_007155	HPRD:01690	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3 (sperm receptor)	protein-coding
19-PTNLD28-TUMOR_peak_39262	chr16	87417046	87417181	+	8.67754	NA	exon (NM_024735, exon 1 of 9)	exon (NM_024735, exon 1 of 9)	286	NM_024735	79791	Hs.567582	NM_024735		FBXO31	FBX14|FBXO14|Fbx31|pp2386	F-box protein 31	protein-coding
19-PTNLD28-TUMOR_peak_66793	chr3	14179152	14179281	+	8.67559	NA	intron (NM_024334, intron 10 of 11)	MIRb|SINE|MIR	12776	NM_024334	79188	Hs.517817	NM_024334	HPRD:15541	TMEM43	ARVC5|ARVD5|EDMD7|LUMA	transmembrane protein 43	protein-coding
19-PTNLD28-TUMOR_peak_40164	chr17	9549268	9549455	+	8.67559	NA	exon (NM_001267576, exon 1 of 15)	exon (NM_001267576, exon 1 of 15)	507	NM_001267576	124739	Hs.709621	NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
19-PTNLD28-TUMOR_peak_91625	chr7	23571911	23572060	+	8.67559	NA	promoter-TSS (NM_001282757)	promoter-TSS (NM_001282757)	-325	NM_013293	29896	Hs.445652	NM_013293	HPRD:04096	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_56581	chr2	160760273	160760416	+	8.67559	NA	intron (NM_002349, intron 1 of 34)	intron (NM_002349, intron 1 of 34)	923	NM_001198760	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_64411	chr22	20118674	20118843	+	8.67559	NA	promoter-TSS (NM_001185024)	promoter-TSS (NM_001185024)	-606	NM_001185024	29801	Hs.63128	NM_013373	HPRD:12298	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger, DHHC-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_40063	chr17	8062192	8062307	+	8.67034	NA	TTS (NM_014232)	TTS (NM_014232)	4044	NM_014232	6844	Hs.25348	NM_014232	HPRD:01717	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
19-PTNLD28-TUMOR_peak_25837	chr12	102285541	102285691	+	8.67008	NA	intron (NM_018370, intron 1 of 6)	intron (NM_018370, intron 1 of 6)	14511	NM_018370	55332	Hs.525634	NM_018370	HPRD:07743	DRAM1	DRAM	DNA-damage regulated autophagy modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_1201	chr1	19288758	19288993	+	8.67008	NA	Intergenic	Intergenic	-6049	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
19-PTNLD28-TUMOR_peak_57554	chr2	193059515	193059824	+	8.67008	NA	promoter-TSS (NM_016192)	promoter-TSS (NM_016192)	-25	NM_016192	23671	Hs.144513	NM_016192	HPRD:05760	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_35926	chr16	3420280	3420406	+	8.67008	NA	TTS (NM_001190476)	TTS (NM_001190476)	1940	NM_001190476	100463285	Hs.639648	NM_001190476	ENSG00000232196	MTRNR2L4	HN4	MT-RNR2-like 4	protein-coding
19-PTNLD28-TUMOR_peak_96821	chr8	33798	33895	+	8.67008	NA	Intergenic	L1MD3|LINE|L1	83178	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_101589	chr8	144152485	144152608	+	8.67008	NA	Intergenic	Intergenic	31867	NM_173687	286122	Hs.660382	NM_173687	HPRD:08781	C8orf31	-	chromosome 8 open reading frame 31	protein-coding
19-PTNLD28-TUMOR_peak_504	chr1	8262277	8262497	+	8.66940	NA	Intergenic	Intergenic	-115758	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_54336	chr2	97534296	97534456	+	8.66940	NA	intron (NM_017789, intron 1 of 14)	CpG	1359	NM_017789	54910	Hs.516220	NM_017789	HPRD:07257	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding
19-PTNLD28-TUMOR_peak_63950	chr21	45754000	45754262	+	8.66940	NA	intron (NM_001271440, intron 3 of 6)	CpG	4090	NM_001271442	755	Hs.517331	NM_004928	ENSG00000160226	C21orf2	LRRC76|YF5/A2	chromosome 21 open reading frame 2	protein-coding
19-PTNLD28-TUMOR_peak_101683	chr8	144976766	144976931	+	8.66778	NA	Intergenic	Intergenic	-24216	NM_031308	83481	Hs.200412	NM_031308		EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
19-PTNLD28-TUMOR_peak_87819	chr6	46889593	46889752	+	8.66778	NA	promoter-TSS (NM_001098518)	promoter-TSS (NM_001098518)	42	NM_001098518	221395	Hs.362806	NM_015234	HPRD:11010	GPR116	KPG_001	G protein-coupled receptor 116	protein-coding
19-PTNLD28-TUMOR_peak_76459	chr4	104176843	104176946	+	8.66589	NA	Intergenic	L1PA2|LINE|L1	-57328	NM_001286734	1062	Hs.75573	NM_001813	HPRD:00316	CENPE	CENP-E|KIF10|PPP1R61	centromere protein E, 312kDa	protein-coding
19-PTNLD28-TUMOR_peak_39768	chr17	3838492	3838600	+	8.66589	NA	exon (NM_005173, exon 17 of 21)	exon (NM_005173, exon 17 of 21)	-18586	NM_002558	5023	Hs.41735	NM_002558	HPRD:07526	P2RX1	P2X1	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding
19-PTNLD28-TUMOR_peak_24792	chr12	58040738	58040827	+	8.66589	NA	Intergenic	L1PA2|LINE|L1	-13760	NM_001478	2583	Hs.159481	NM_001478	HPRD:03525	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding
19-PTNLD28-TUMOR_peak_71559	chr3	148415810	148416012	+	8.66589	NA	5' UTR (NM_031850, exon 1 of 4)	5' UTR (NM_031850, exon 1 of 4)	253	NM_004835	185	Hs.477887	NM_000685	HPRD:00107	AGTR1	AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R	angiotensin II receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_32654	chr15	26192669	26192771	+	8.66589	NA	intron (NR_040082, intron 1 of 4)	intron (NR_040082, intron 1 of 4)	45213	NR_040082	100128714	Hs.587854	NR_040082	ENSG00000206187	LOC100128714	-	uncharacterized LOC100128714	ncRNA
19-PTNLD28-TUMOR_peak_20849	chr11	102164863	102164974	+	8.66589	NA	Intergenic	Intergenic	-23263	NM_182962	330	Hs.127799	NM_001165	HPRD:03426	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_76803	chr4	120258321	120258416	+	8.66589	NA	Intergenic	Intergenic	-15052	NM_000134	2169	Hs.282265	NM_000134	HPRD:00611	FABP2	FABPI|I-FABP	fatty acid binding protein 2, intestinal	protein-coding
19-PTNLD28-TUMOR_peak_64738	chr22	24503751	24504034	+	8.66589	NA	intron (NM_012295, intron 26 of 36)	intron (NM_012295, intron 26 of 36)	-73552	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_88252	chr6	71849067	71849226	+	8.66589	NA	Intergenic	L1PA2|LINE|L1	-149331	NM_024576	79627	Hs.648434	NM_024576		OGFRL1	dJ331H24.1	opioid growth factor receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96756	chr7	158418812	158418942	+	8.66589	NA	Intergenic	AluSx|SINE|Alu	34569	NR_049893	100847032		NR_049893	miRBase:MI0019315	MIR5707	-	microRNA 5707	ncRNA
19-PTNLD28-TUMOR_peak_69173	chr3	77461224	77461358	+	8.66589	NA	intron (NM_001290065, intron 2 of 26)	intron (NM_001290065, intron 2 of 26)	314128	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout, axon guidance receptor, homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_107671	chrX	16915664	16915866	+	8.66589	NA	Intergenic	Intergenic	-27231	NM_002893	5931	Hs.495755	NM_002893	HPRD:04231	RBBP7	RbAp46	retinoblastoma binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_5665	chr1	114417071	114417200	+	8.66589	NA	intron (NR_037864, intron 3 of 4)	intron (NR_037864, intron 3 of 4)	-2760	NM_001193431	26191	Hs.535276	NM_012411	HPRD:06100	PTPN22	LYP|LYP1|LYP2|PEP|PTPN8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding
19-PTNLD28-TUMOR_peak_72659	chr3	182431982	182432117	+	8.66589	NA	Intergenic	Intergenic	-79242	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_81965	chr5	127075100	127075215	+	8.66589	NA	Intergenic	L1PA2|LINE|L1	86450	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
19-PTNLD28-TUMOR_peak_44227	chr18	839398	839564	+	8.66589	NA	Intergenic	Intergenic	-27154	NM_005433	7525	Hs.194148	NM_005433	HPRD:01285	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_76134	chr4	87056261	87056417	+	8.66589	NA	intron (NR_110879, intron 3 of 3)	L1PA3|LINE|L1	15380	NR_110879	101929064	Hs.662221	NR_110879	ENSG00000250062	LOC101929064	-	uncharacterized LOC101929064	ncRNA
19-PTNLD28-TUMOR_peak_100335	chr8	120182286	120182511	+	8.66589	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-38212	NM_052886	114569	Hs.201083	NM_052886	HPRD:14351	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_11421	chr1	244964655	244964789	+	8.66589	NA	Intergenic	Intergenic	-33917	NM_198076	116228	Hs.411490	NM_198076	HPRD:13307	COX20	FAM36A	COX20 cytochrome C oxidase assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_101193	chr8	135141533	135141689	+	8.66589	NA	Intergenic	Intergenic	242872	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_104617	chr9	95667768	95667920	+	8.66589	NA	Intergenic	L1PA3|LINE|L1	22995	NR_111003	642943	Hs.643602	NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105727	chr9	119714483	119714621	+	8.66589	NA	intron (NM_014010, intron 9 of 21)	MER117|DNA|hAT-Charlie	228928	NR_003708	100124538	Hs.693445	NR_003708		SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
19-PTNLD28-TUMOR_peak_107977	chrX	39813287	39813417	+	8.66589	NA	Intergenic	Intergenic	143367	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_81468	chr5	108017136	108017252	+	8.66589	NA	Intergenic	Intergenic	46768	NR_046368	100652853	Hs.133009	NR_046368	ENSG00000272523	LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
19-PTNLD28-TUMOR_peak_79178	chr5	17755324	17755414	+	8.66589	NA	Intergenic	L1PA3|LINE|L1	-367950	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_34769	chr15	80465748	80465896	+	8.66589	NA	intron (NM_000137, intron 9 of 13)	intron (NM_000137, intron 9 of 13)	20589	NM_000137	2184	Hs.73875	NM_000137	HPRD:02040	FAH	-	fumarylacetoacetate hydrolase (fumarylacetoacetase)	protein-coding
19-PTNLD28-TUMOR_peak_13783	chr10	61791644	61791759	+	8.66589	NA	intron (NM_001149, intron 20 of 20)	intron (NM_001149, intron 20 of 20)	-71030	NR_024340	283025	Hs.522955	NM_001017982	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
19-PTNLD28-TUMOR_peak_35450	chr15	99949337	99949502	+	8.66589	NA	Intergenic	Intergenic	151689	NR_073383	7190	Hs.656611	NR_073383		HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90kDa beta (Grp94), member 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_51249	chr2	14988693	14988804	+	8.66589	NA	Intergenic	L1PA2|LINE|L1	213533	NM_001291410	653602	Hs.657296	NM_001291410		LOC653602	-	uncharacterized LOC653602	protein-coding
19-PTNLD28-TUMOR_peak_95072	chr7	127545887	127546112	+	8.66589	NA	intron (NM_014390, intron 14 of 23)	intron (NM_014390, intron 14 of 23)	-91563	NR_027330	27099	Hs.657377	NM_014411		SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16259	chr10	130901717	130901888	+	8.66589	NA	Intergenic	Intergenic	-363652	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_58407	chr2	219154809	219154955	+	8.66401	NA	intron (NM_022152, intron 1 of 11)	MER103C|DNA|hAT-Charlie	2398	NM_022152	64114	Hs.591605	NM_022152	HPRD:17884	TMBIM1	LFG3|MST100|MSTP100|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_45001	chr18	24127887	24128025	+	8.66272	NA	exon (NM_001142730, exon 1 of 5)	exon (NM_001142730, exon 1 of 5)	544	NM_001142730	284252	Hs.526630	NM_198991	HPRD:11059	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_47053	chr19	8418873	8419050	+	8.66014	NA	Intergenic	Intergenic	-10050	NR_104213	51129	Hs.9613	NM_016109	HPRD:16173	ANGPTL4	ANGPTL2|ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_101982	chr9	2843468	2843699	+	8.66014	NA	intron (NM_014878, intron 1 of 17)	AluY|SINE|Alu	547	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_63142	chr21	32926855	32927043	+	8.65398	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	4341	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_103605	chr9	70089932	70090267	+	8.65398	NA	Intergenic	TAR1|Satellite|telo	88716	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
19-PTNLD28-TUMOR_peak_93290	chr7	73843905	73844102	+	8.65342	NA	Intergenic	MIR|SINE|MIR	-24117	NM_005685	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61786	chr20	48895434	48895746	+	8.65342	NA	3' UTR (NM_001278655, exon 4 of 4)	3' UTR (NM_001278655, exon 4 of 4)	11567	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
19-PTNLD28-TUMOR_peak_65318	chr22	36556748	36556917	+	8.65342	NA	exon (NM_145640, exon 1 of 3)	exon (NM_145640, exon 1 of 3)	145	NR_027833	80833	Hs.474737	NM_014349	HPRD:06264	APOL3	APOLIII|CG121	apolipoprotein L, 3	protein-coding
19-PTNLD28-TUMOR_peak_40085	chr17	8191867	8192094	+	8.65342	NA	promoter-TSS (NM_001177801)	promoter-TSS (NM_001177801)	11	NM_001177801	29098	Hs.408233	NM_016492	HPRD:06407	RANGRF	HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
19-PTNLD28-TUMOR_peak_21319	chr11	114925402	114925555	+	8.65342	NA	Intergenic	Intergenic	376278	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_7962	chr1	167067817	167068031	+	8.65342	NA	intron (NM_001080426, intron 1 of 4)	MLT1G3|LTR|ERVL-MaLR	3837	NM_001080426	92235	Hs.632462	NM_001080426	ENSG00000198842	DUSP27	-	dual specificity phosphatase 27 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_65713	chr22	42255625	42255943	+	8.65342	NA	intron (NR_103834, intron 1 of 21)	MIRb|SINE|MIR	26701	NM_004599	6721	Hs.443258	NM_004599	HPRD:02726	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_68751	chr3	63962373	63962516	+	8.65342	NA	intron (NM_001128149, intron 1 of 8)	Tigger9b|DNA|TcMar-Tigger	9024	NM_001128149	6314	Hs.476595	NM_000333	HPRD:06365	ATXN7	ADCAII|OPCA3|SCA7	ataxin 7	protein-coding
19-PTNLD28-TUMOR_peak_47680	chr19	14955107	14955339	+	8.65342	NA	Intergenic	L2b|LINE|L2	-2534	NM_001005190	390892	Hs.553776	NM_001005190	HPRD:17780	OR7A10	BC85395_3|OR19-18	olfactory receptor, family 7, subfamily A, member 10	protein-coding
19-PTNLD28-TUMOR_peak_92534	chr7	50603212	50603355	+	8.65238	NA	intron (NR_033845, intron 1 of 4)	intron (NR_033845, intron 1 of 4)	3826	NR_033845	100129427	Hs.680434	NR_033845	ENSG00000226122	DDC-AS1	-	DDC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24443	chr12	53455284	53455453	+	8.65238	NA	intron (NM_170754, intron 21 of 28)	intron (NM_170754, intron 21 of 28)	4640	NR_106815	102466193		NR_106815		MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
19-PTNLD28-TUMOR_peak_40116	chr17	8601526	8601767	+	8.65238	NA	Intergenic	L2c|LINE|L2	46508	NM_144681	146849	Hs.121438	NM_144681	HPRD:08731	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_38969	chr16	81458577	81458720	+	8.65238	NA	Intergenic	Intergenic	-20127	NM_198390	80790	Hs.594095	NM_030629	HPRD:10839	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_63723	chr21	43459658	43460064	+	8.65238	NA	Intergenic	Intergenic	17483	NR_027273	150142	Hs.143833	NM_198078		ZNF295-AS1	C21orf121|NCRNA00318	ZNF295 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22183	chr11	130397656	130397773	+	8.65238	NA	Intergenic	Intergenic	78845	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_80494	chr5	69814820	69814936	+	8.64974	NA	intron (NR_033968, intron 2 of 3).2	intron (NR_033968, intron 2 of 3).2	32550	NR_073404	441081	Hs.721548	NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90709	chr7	70653	70932	+	8.64828	NA	Intergenic	MIR|SINE|MIR	-78926	NR_108065	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
19-PTNLD28-TUMOR_peak_13958	chr10	69524862	69525110	+	8.64828	NA	Intergenic	AluY|SINE|Alu	-69037	NM_013266	29119	Hs.21375	NM_013266	HPRD:09639	CTNNA3	ARVD13|VR22	catenin (cadherin-associated protein), alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_49358	chr19	45579683	45579837	+	8.64828	NA	promoter-TSS (NM_145288)	promoter-TSS (NM_145288)	-72	NM_145288	162979	Hs.192237	NM_145288	HPRD:15782	ZNF296	ZFP296|ZNF342	zinc finger protein 296	protein-coding
19-PTNLD28-TUMOR_peak_107968	chrX	39619041	39619261	+	8.64737	NA	Intergenic	Intergenic	337568	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_40834	chr17	27435150	27435285	+	8.64737	NA	intron (NM_203318, intron 19 of 40)	intron (NM_203318, intron 19 of 40)	-32590	NM_004740	9220	Hs.462590	NM_004740		TIAF1	MAJN|SPR210	TGFB1-induced anti-apoptotic factor 1	protein-coding
19-PTNLD28-TUMOR_peak_21689	chr11	121323295	121323546	+	8.64737	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	508	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_66931	chr3	15935156	15935277	+	8.64737	NA	Intergenic	Intergenic	19938	NR_030289	693148		NR_030289	miRBase:MI0003569	MIR563	MIRN563|hsa-mir-563	microRNA 563	ncRNA
19-PTNLD28-TUMOR_peak_59452	chr20	1712667	1713025	+	8.64737	NA	Intergenic	HERVH-int|LTR|ERV1	47546	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_28371	chr13	57726344	57726493	+	8.64737	NA	Intergenic	L1MC3|LINE|L1	-1777	NM_198441	122183	Hs.525056	NM_198441	HPRD:13445	PRR20A	PRR20	proline rich 20A	protein-coding
19-PTNLD28-TUMOR_peak_39463	chr16	89545213	89545391	+	8.64737	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	11667	NR_045839	29123	Hs.335003	NM_013275	HPRD:12456	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain 11	protein-coding
19-PTNLD28-TUMOR_peak_101921	chr9	801548	801963	+	8.64737	NA	Intergenic	Intergenic	-39935	NM_021951	1761	Hs.98586	NM_021951	HPRD:03885	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_101484	chr8	142399256	142399439	+	8.64626	NA	Intergenic	Intergenic	-21982	NM_005293	2843	Hs.188859	NM_005293	HPRD:03550	GPR20	-	G protein-coupled receptor 20	protein-coding
19-PTNLD28-TUMOR_peak_47722	chr19	15442349	15442729	+	8.64615	NA	Intergenic	CpG	48073	NM_005858	10270	Hs.594496	NM_005858	HPRD:05258	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A kinase (PRKA) anchor protein 8	protein-coding
19-PTNLD28-TUMOR_peak_55888	chr2	134875966	134876150	+	8.64615	NA	Intergenic	Intergenic	-8638	NR_037450	100500878		NR_037450	miRBase:MI0016080	MIR3679	-	microRNA 3679	ncRNA
19-PTNLD28-TUMOR_peak_47005	chr19	7981511	7981850	+	8.64479	NA	exon (NM_001195259, exon 2 of 6)	exon (NM_001195259, exon 2 of 6)	648	NM_001195259	100507588	Hs.646773	NM_001195259	ENSG00000260001	TGFBR3L	TGFR-3L	transforming growth factor, beta receptor III-like	protein-coding
19-PTNLD28-TUMOR_peak_35769	chr16	2093407	2093598	+	8.64477	NA	intron (NM_002528, intron 4 of 5)	intron (NM_002528, intron 4 of 5)	4365	NM_002528	4913	Hs.66196	NM_002528	HPRD:04039	NTHL1	NTH1|OCTS3|hNTH1	nth endonuclease III-like 1 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_17993	chr11	34378553	34378660	+	8.64307	NA	exon (NM_145804, exon 1 of 17)	exon (NM_145804, exon 1 of 17)	949	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_96403	chr7	151293179	151293280	+	8.64307	NA	intron (NM_001040633, intron 5 of 15)	L1MA6|LINE|L1	36115	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_36444	chr16	14801509	14801605	+	8.64057	NA	Intergenic	Intergenic	-3989	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP	nuclear pore complex interacting protein family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_36452	chr16	14840631	14840727	+	8.64057	NA	Intergenic	Intergenic	-3991	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_103330	chr9	45740122	45740258	+	8.63556	NA	Intergenic	Intergenic	-376753	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_42644	chr17	57496125	57496240	+	8.63556	NA	Intergenic	Intergenic	52738	NR_039882	100616204		NR_039882		MIR4729	-	microRNA 4729	ncRNA
19-PTNLD28-TUMOR_peak_76801	chr4	120221332	120221441	+	8.63556	NA	intron (NM_001001701, intron 1 of 1)	MIR|SINE|MIR	582	NM_001001701	401152	Hs.173705	NM_001001701		C4orf3	-	chromosome 4 open reading frame 3	protein-coding
19-PTNLD28-TUMOR_peak_85114	chr6	6879906	6880005	+	8.63482	NA	Intergenic	Intergenic	-227875	NM_001168344	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79879	chr5	53942296	53942539	+	8.63482	NA	Intergenic	Intergenic	56735	NR_104659	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_9758	chr1	206714233	206714338	+	8.63482	NA	intron (NM_182663, intron 2 of 5)	AluSz|SINE|Alu	-16207	NM_182665	83593	Hs.497579	NM_031437	HPRD:06117	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_23749	chr12	38083967	38084058	+	8.63358	NA	Intergenic	ALR/Alpha|Satellite|centr	-626545	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_8203	chr1	172360013	172360229	+	8.63358	NA	intron (NM_001136127, intron 19 of 19)	intron (NM_001136127, intron 19 of 19)	-29707	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_85470	chr6	13336879	13337009	+	8.63358	NA	Intergenic	Intergenic	-8129	NM_001258457	51256	Hs.484678	NM_016495	HPRD:18165	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family, member 7	protein-coding
19-PTNLD28-TUMOR_peak_44225	chr18	811857	812652	+	8.63358	NA	promoter-TSS (NM_005433)	promoter-TSS (NM_005433)	73	NM_005433	7525	Hs.194148	NM_005433	HPRD:01285	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_39423	chr16	89160226	89160344	+	8.63358	NA	promoter-TSS (NM_001243279)	promoter-TSS (NM_001243279)	68	NM_174917	197322	Hs.461727	NM_174917	HPRD:14117	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_59967	chr20	17324335	17324483	+	8.63358	NA	intron (NM_002594, intron 2 of 11)	MLT1D|LTR|ERVL-MaLR	116812	NM_002594	5126	Hs.315186	NM_002594	HPRD:01202	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
19-PTNLD28-TUMOR_peak_108190	chrX	47505016	47505176	+	8.63358	NA	intron (NM_005229, intron 1 of 5)	intron (NM_005229, intron 1 of 5)	4907	NM_005229	2002	Hs.181128	NM_005229	HPRD:02407	ELK1	-	ELK1, member of ETS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_61359	chr20	44446509	44446676	+	8.63358	NA	TTS (NM_181800)	TTS (NM_181800)	4920	NM_181801	11065	Hs.93002	NM_007019	HPRD:05717	UBE2C	UBCH10|dJ447F3.2	ubiquitin-conjugating enzyme E2C	protein-coding
19-PTNLD28-TUMOR_peak_104594	chr9	94909636	94909780	+	8.63358	NA	intron (NR_027341, intron 1 of 3)	intron (NR_027341, intron 1 of 3)	5959	NR_027341	158314	Hs.149940	NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
19-PTNLD28-TUMOR_peak_75031	chr4	40311375	40311677	+	8.63358	NA	intron (NR_121641, intron 2 of 3)	intron (NR_121641, intron 2 of 3)	2324	NR_121641	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_70565	chr3	127402511	127402790	+	8.63358	NA	Intergenic	Intergenic	10869	NR_033429	80325	Hs.107812	NM_032548	HPRD:10513	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_21443	chr11	117394525	117394633	+	8.63358	NA	intron (NM_020693, intron 5 of 32)	intron (NM_020693, intron 5 of 32)	196008	NM_014956	22897	Hs.504009	NM_014956	HPRD:10854	CEP164	NPHP15	centrosomal protein 164kDa	protein-coding
19-PTNLD28-TUMOR_peak_82051	chr5	130722548	130722806	+	8.63252	NA	intron (NM_020240, intron 4 of 5)	intron (NM_020240, intron 4 of 5)	122975	NM_020240	56990	Hs.508829	NM_020240	HPRD:16695	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
19-PTNLD28-TUMOR_peak_96401	chr7	151272638	151272755	+	8.63252	NA	intron (NM_001040633, intron 7 of 15)	intron (NM_001040633, intron 7 of 15)	-55686	NM_005614	6009	Hs.283521	NM_005614	HPRD:03188	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding
19-PTNLD28-TUMOR_peak_72284	chr3	170478233	170478435	+	8.63252	NA	Intergenic	Intergenic	109711	NM_001099645	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22-like 1	protein-coding
19-PTNLD28-TUMOR_peak_63777	chr21	44027740	44028177	+	8.63252	NA	Intergenic	MER4D1|LTR|ERV1	-45904	NM_001001571	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_58986	chr2	235930399	235930668	+	8.63252	NA	intron (NM_014521, intron 2 of 5)	L1M5|LINE|L1	69905	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_45799	chr18	49839560	49839873	+	8.63252	NA	Intergenic	Intergenic	-26826	NM_005215	1630	Hs.162025	NM_005215		DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_9579	chr1	204966115	204966236	+	8.63252	NA	intron (NM_001160332, intron 25 of 27)	intron (NM_001160332, intron 25 of 27)	-46165	NM_005076	6900	Hs.519220	NM_005076	HPRD:01826	CNTN2	AXT|FAME5|TAG-1|TAX|TAX1	contactin 2 (axonal)	protein-coding
19-PTNLD28-TUMOR_peak_109317	chrX	119077570	119077839	+	8.63252	NA	promoter-TSS (NM_024528)	promoter-TSS (NM_024528)	31	NM_024528	79576	Hs.522771	NM_024528	HPRD:06666	NKAP	-	NFKB activating protein	protein-coding
19-PTNLD28-TUMOR_peak_32257	chr14	104394637	104394903	+	8.63252	NA	promoter-TSS (NM_153046)	promoter-TSS (NM_153046)	-47	NM_153046	122402	Hs.21454	NM_153046	HPRD:15484	TDRD9	C14orf75|HIG-1|NET54	tudor domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_25228	chr12	70294559	70294668	+	8.63252	NA	Intergenic	MER91C|DNA|hAT-Tip100	121881	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_26450	chr12	115121943	115122091	+	8.63252	NA	promoter-TSS (NM_016569)	promoter-TSS (NM_016569)	-48	NM_005996	6926	Hs.744016	NM_005996	HPRD:03373	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
19-PTNLD28-TUMOR_peak_83793	chr5	168801208	168801377	+	8.63252	NA	Intergenic	L1PA7|LINE|L1	-73159	NM_003062	6586	Hs.552087	NM_003062	HPRD:04775	SLIT3	MEGF5|SLIL2|SLIT1|Slit-3|slit2	slit homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_35222	chr15	91203817	91204035	+	8.63252	NA	non-coding (NR_120371, exon 1 of 3)	non-coding (NR_120371, exon 1 of 3)	461	NR_120371	101929765	Hs.615348	NR_120371	ENSG00000245479	LOC101929765	-	uncharacterized LOC101929765	ncRNA
19-PTNLD28-TUMOR_peak_57291	chr2	182521383	182521681	+	8.63252	NA	exon (NM_001160277, exon 1 of 13)	exon (NM_001160277, exon 1 of 13)	302	NM_001160277	375298	Hs.732358	NM_201548	HPRD:09757	CERKL	RP26	ceramide kinase-like	protein-coding
19-PTNLD28-TUMOR_peak_89187	chr6	114317025	114317123	+	8.63252	NA	Intergenic	Intergenic	-24715	NR_033441	3066	Hs.3352	NM_001527	HPRD:05521	HDAC2	HD2|RPD3|YAF1	histone deacetylase 2	protein-coding
19-PTNLD28-TUMOR_peak_85602	chr6	15536515	15536692	+	8.63252	NA	intron (NM_032122, intron 7 of 9)	THE1D-int|LTR|ERVL-MaLR	126686	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_30265	chr14	51909335	51909524	+	8.63252	NA	Intergenic	Intergenic	-46410	NM_001042481	122786	Hs.434914	NM_152330	HPRD:12646	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_66498	chr3	9957328	9957490	+	8.63142	NA	exon (NM_153483, exon 17 of 17)	exon (NM_153483, exon 17 of 17)	-1349	NR_037807	84818	Hs.129959	NM_032732	HPRD:17142	IL17RC	IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
19-PTNLD28-TUMOR_peak_73842	chr4	1581934	1582114	+	8.62429	NA	Intergenic	CpG	103694	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_65979	chr22	46495687	46495890	+	8.62257	NA	intron (NR_110479, intron 3 of 4)	intron (NR_110479, intron 3 of 4)	8864	NR_037413	100500828		NR_037413	miRBase:MI0016009	MIR3619	-	microRNA 3619	ncRNA
19-PTNLD28-TUMOR_peak_61395	chr20	44747889	44748053	+	8.62257	NA	intron (NM_152854, intron 1 of 7)	intron (NM_152854, intron 1 of 7)	1065	NM_152854	958	Hs.472860	NM_001250	HPRD:00178	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule, TNF receptor superfamily member 5	protein-coding
19-PTNLD28-TUMOR_peak_11654	chr10	1507002	1507300	+	8.62257	NA	intron (NM_018702, intron 1 of 9)	L1ME1|LINE|L1	-61674	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_100850	chr8	129043502	129043754	+	8.62257	NA	intron (NR_003367, intron 4 of 7)	intron (NR_003367, intron 4 of 7)	-17770	NR_031612	100302175		NR_031612	miRBase:MI0006340	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_100483	chr8	123794503	123794920	+	8.62188	NA	intron (NM_014943, intron 1 of 3)	CpG-25975	810	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_33825	chr15	60685260	60685554	+	8.62188	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	4778	NM_001002858	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_15201	chr10	101489867	101490039	+	8.62110	NA	intron (NM_004376, intron 1 of 8)	intron (NM_004376, intron 1 of 8)	-2005	NM_015960	51076	Hs.16606	NM_015960	HPRD:13100	CUTC	-	cutC copper transporter	protein-coding
19-PTNLD28-TUMOR_peak_45200	chr18	32958085	32958415	+	8.62110	NA	promoter-TSS (NM_145756)	promoter-TSS (NM_145756)	-949	NM_145756	252884	Hs.351005	NM_145756	HPRD:18334	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
19-PTNLD28-TUMOR_peak_59105	chr2	238525448	238525550	+	8.62110	NA	Intergenic	Intergenic	-10725	NM_001137550	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40163	chr17	9548661	9548955	+	8.62110	NA	promoter-TSS (NM_001267576)	promoter-TSS (NM_001267576)	-46	NM_153210	124739	Hs.709621	NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
19-PTNLD28-TUMOR_peak_25173	chr12	69140481	69140682	+	8.62110	NA	intron (NM_018656, intron 1 of 4)	intron (NM_018656, intron 1 of 4)	645	NM_018656	55508	Hs.506011	NM_018656		SLC35E3	BLOV1	solute carrier family 35, member E3	protein-coding
19-PTNLD28-TUMOR_peak_71866	chr3	155525736	155525861	+	8.62110	NA	Intergenic	MIR|SINE|MIR	-1743	NM_173657	285315	Hs.350846	NM_173657	HPRD:08095	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_66792	chr3	14178564	14178801	+	8.62110	NA	intron (NM_024334, intron 10 of 11)	intron (NM_024334, intron 10 of 11)	12242	NM_024334	79188	Hs.517817	NM_024334	HPRD:15541	TMEM43	ARVC5|ARVD5|EDMD7|LUMA	transmembrane protein 43	protein-coding
19-PTNLD28-TUMOR_peak_40452	chr17	18163010	18163247	+	8.62086	NA	promoter-TSS (NM_002018)	promoter-TSS (NM_002018)	-720	NM_139162	125170	Hs.655555	NM_139162	HPRD:18074	MIEF2	MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_18370	chr11	45940384	45940480	+	8.61626	NA	promoter-TSS (NM_057174)	promoter-TSS (NM_057174)	-758	NM_004813	9409	Hs.100915	NM_004813	HPRD:04526	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
19-PTNLD28-TUMOR_peak_86634	chr6	31631910	31631998	+	8.61500	NA	exon (NM_001199240, exon 3 of 4)	exon (NM_001199240, exon 3 of 4)	1225	NM_033177	7918	Hs.247478	NM_033177	HPRD:00810	GPANK1	ANKRD59|BAT4|D6S54E|G5|GPATCH10	G patch domain and ankyrin repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_16524	chr11	842383	842571	+	8.61500	NA	promoter-TSS (NM_021128)	promoter-TSS (NM_021128)	52	NM_021128	5441	Hs.441072	NM_021128	HPRD:01155	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa	protein-coding
19-PTNLD28-TUMOR_peak_104057	chr9	82187394	82187604	+	8.61485	NA	non-coding (NR_104239, exon 1 of 21)	non-coding (NR_104239, exon 1 of 21)	811	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4	transducin-like enhancer of split 4	protein-coding
19-PTNLD28-TUMOR_peak_59113	chr2	238600828	238600951	+	8.61485	NA	promoter-TSS (NM_001137553)	promoter-TSS (NM_001137553)	82	NM_001137553	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_55141	chr2	114609326	114609475	+	8.61448	NA	intron (NR_110174, intron 2 of 4)	L2c|LINE|L2	-38111	NR_102318	10096	Hs.433512	NM_005721	HPRD:05024	ACTR3	ARP3	ARP3 actin-related protein 3 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_60525	chr20	31365097	31365218	+	8.61448	NA	intron (NM_006892, intron 1 of 22)	intron (NM_006892, intron 1 of 22)	-2501	NM_175850	1789	Hs.643024	NM_006892	HPRD:04209	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA (cytosine-5-)-methyltransferase 3 beta	protein-coding
19-PTNLD28-TUMOR_peak_14977	chr10	95753562	95753700	+	8.61448	NA	promoter-TSS (NM_016341)	promoter-TSS (NM_016341)	-115	NM_016341	51196	Hs.655033	NM_016341	HPRD:07087	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_49303	chr19	44914565	44914684	+	8.61448	NA	Intergenic	Intergenic	-8847	NM_001291489	26974	Hs.709428	NM_152354	HPRD:15759	ZNF285	ZNF285A	zinc finger protein 285	protein-coding
19-PTNLD28-TUMOR_peak_67422	chr3	32509378	32509579	+	8.61448	NA	Intergenic	CpG	34925	NM_017801	54918	Hs.380627	NM_017801	HPRD:06987	CMTM6	CKLFSF6|PRO2219	CKLF-like MARVEL transmembrane domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_92516	chr7	50109291	50109487	+	8.61448	NA	intron (NM_007009, intron 3 of 7)	HERV15-int|LTR|ERV1	23471	NM_001159878	11055	Hs.388841	NM_007009	HPRD:18364	ZPBP	ZPBP1	zona pellucida binding protein	protein-coding
19-PTNLD28-TUMOR_peak_22699	chr12	6157100	6157225	+	8.61448	NA	intron (NM_000552, intron 16 of 51)	L1ME3E|LINE|L1	76674	NM_000552	7450	Hs.440848	NM_000552	HPRD:01906	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
19-PTNLD28-TUMOR_peak_28764	chr13	98221200	98221368	+	8.61448	NA	Intergenic	LTR67B|LTR|ERVL	134809	NM_021033	5911	Hs.508480	NM_021033		RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_34220	chr15	69744681	69744845	+	8.61448	NA	promoter-TSS (NM_213725)	promoter-TSS (NM_213725)	-396	NM_213725	6176	Hs.356502	NM_001003	HPRD:01611	RPLP1	LP1|P1|RPP1	ribosomal protein, large, P1	protein-coding
19-PTNLD28-TUMOR_peak_56623	chr2	161259957	161260050	+	8.61448	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	4390	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	ncRNA
19-PTNLD28-TUMOR_peak_419	chr1	6982808	6982980	+	8.61246	NA	intron (NM_015215, intron 3 of 22)	intron (NM_015215, intron 3 of 22)	137510	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_55719	chr2	131485698	131485810	+	8.61246	NA	promoter-TSS (NM_207364)	promoter-TSS (NM_207364)	-889	NM_207364	344561	Hs.452574	NM_207364	HPRD:13598	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
19-PTNLD28-TUMOR_peak_87775	chr6	45954639	45954775	+	8.61246	NA	intron (NM_001114086, intron 1 of 5)	intron (NM_001114086, intron 1 of 5)	28919	NM_001256023	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_32143	chr14	102982874	102983069	+	8.61246	NA	Intergenic	CpG	-6843	NM_152326	122416	Hs.432945	NM_152326	HPRD:12467	ANKRD9	-	ankyrin repeat domain 9	protein-coding
19-PTNLD28-TUMOR_peak_106093	chr9	128302917	128303033	+	8.61246	NA	intron (NM_001006618, intron 7 of 7)	intron (NM_001006618, intron 7 of 7)	166538	NM_001006619	79109	Hs.495138	NM_024117	HPRD:17464	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51988	chr2	31210614	31210713	+	8.61246	NA	intron (NM_001253826, intron 3 of 15)	intron (NM_001253826, intron 3 of 15)	141843	NM_001253827	79623	Hs.468058	NM_024572	HPRD:12194	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
19-PTNLD28-TUMOR_peak_100097	chr8	110649717	110650111	+	8.61246	NA	intron (NM_001099746, intron 1 of 5)	MER129|LTR?|LTR?	5505	NM_001099756	55638	Hs.390738	NM_017786	HPRD:07902	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
19-PTNLD28-TUMOR_peak_52464	chr2	44295327	44295420	+	8.61246	NA	Intergenic	SVA_D|Other|Other	-72229	NM_133259	10128	Hs.368084	NM_133259	HPRD:06343	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine-rich pentatricopeptide repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_78649	chr5	1168313	1168480	+	8.61246	NA	Intergenic	L1M5|LINE|L1	10324	NR_109911	101928857	Hs.593732	NR_109911	ENSG00000249201	CTD-3080P12.3	-	uncharacterized LOC101928857	ncRNA
19-PTNLD28-TUMOR_peak_103127	chr9	40133378	40133665	+	8.61246	NA	Intergenic	Intergenic	233175	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_64148	chr22	16154640	16154816	+	8.61246	NA	intron (NR_122113, intron 7 of 7)	intron (NR_122113, intron 7 of 7)	-7338	NR_073460	101101776	Hs.617315	NR_073460		BMS1P17	LINC00516	BMS1 pseudogene 17	pseudo
19-PTNLD28-TUMOR_peak_66138	chr22	51066644	51066900	+	8.61246	NA	promoter-TSS (NM_001085427)	promoter-TSS (NM_001085427)	-171	NM_001085427	410	Hs.88251	NM_000487		ARSA	MLD	arylsulfatase A	protein-coding
19-PTNLD28-TUMOR_peak_11874	chr10	6270058	6270491	+	8.61246	NA	intron (NM_001282630, intron 14 of 14)	intron (NM_001282630, intron 14 of 14)	25434	NM_004566	5209	Hs.195471	NM_004566	HPRD:05612	PFKFB3	IPFK2|PFK2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
19-PTNLD28-TUMOR_peak_969	chr1	15357244	15357382	+	8.61246	NA	intron (NM_001017999, intron 2 of 7)	intron (NM_001017999, intron 2 of 7)	84898	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_94335	chr7	100253972	100254187	+	8.61246	NA	promoter-TSS (NM_016188)	promoter-TSS (NM_016188)	5	NM_016188	51412	Hs.259831	NM_016188	HPRD:12419	ACTL6B	ACTL6|BAF53B	actin-like 6B	protein-coding
19-PTNLD28-TUMOR_peak_74835	chr4	26021936	26022167	+	8.61246	NA	Intergenic	MER41B|LTR|ERV1	106237	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_51701	chr2	27069345	27069474	+	8.61246	NA	Intergenic	Intergenic	-1560	NM_020134	56896	Hs.299315	NM_020134	HPRD:10522	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase-like 5	protein-coding
19-PTNLD28-TUMOR_peak_42871	chr17	62193334	62193543	+	8.61163	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	14064	NM_001433	2081	Hs.133982	NM_001433	HPRD:04943	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_71318	chr3	140824784	140824933	+	8.61163	NA	intron (NM_080862, intron 2 of 2)	intron (NM_080862, intron 2 of 2)	54115	NM_080862	92369	Hs.655112	NM_080862	HPRD:18108	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_44579	chr18	11120006	11120195	+	8.61163	NA	intron (NM_022068, intron 1 of 51)	intron (NM_022068, intron 1 of 51)	28661	NM_022068	63895	Hs.436902	NM_022068	HPRD:07636	PIEZO2	C18orf30|C18orf58|DA3|DA5|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo-type mechanosensitive ion channel component 2	protein-coding
19-PTNLD28-TUMOR_peak_25249	chr12	70937430	70937541	+	8.61163	NA	intron (NM_002837, intron 20 of 31)	intron (NM_002837, intron 20 of 31)	66139	NM_002837	5787	Hs.434375	NM_002837	HPRD:01474	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
19-PTNLD28-TUMOR_peak_21242	chr11	113399818	113400024	+	8.61163	NA	Intergenic	L2c|LINE|L2	-53920	NM_000795	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_68373	chr3	53074656	53074757	+	8.61163	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	5383	NM_016329	51460	Hs.343679	NM_016329	HPRD:09539	SFMBT1	RU1|SFMBT|hSFMBT	Scm-like with four mbt domains 1	protein-coding
19-PTNLD28-TUMOR_peak_41002	chr17	31413251	31413396	+	8.61163	NA	intron (NM_183377, intron 3 of 9)	intron (NM_183377, intron 3 of 9)	94441	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_93890	chr7	90909974	90910346	+	8.61163	NA	Intergenic	Intergenic	16377	NM_003505	8321	Hs.94234	NM_003505	HPRD:04558	FZD1	-	frizzled class receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_80103	chr5	58718486	58718612	+	8.61163	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-65822	NM_001197219	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_22558	chr12	3660682	3660810	+	8.61163	NA	intron (NM_001256536, intron 3 of 9)	intron (NM_001256536, intron 3 of 9)	60382	NM_019854	56341	Hs.504530	NM_019854	HPRD:11029	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_67330	chr3	29849898	29850052	+	8.61163	NA	intron (NM_001003792, intron 6 of 13)	intron (NM_001003792, intron 6 of 13)	125672	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54674	chr2	106084543	106084756	+	8.61163	NA	Intergenic	MER41B|LTR|ERV1	-29419	NM_201557	2274	Hs.443687	NM_001450	HPRD:04026	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
19-PTNLD28-TUMOR_peak_55857	chr2	134304492	134304605	+	8.61163	NA	intron (NM_207481, intron 2 of 17)	L1PA2|LINE|L1	21483	NM_207481	344148	Hs.537329	NM_207363	HPRD:16936	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_8642	chr1	181469036	181469285	+	8.61163	NA	intron (NM_001205293, intron 1 of 47)	intron (NM_001205293, intron 1 of 47)	16474	NM_001205294	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_74732	chr4	21902845	21903187	+	8.61163	NA	intron (NM_147182, intron 1 of 8)	intron (NM_147182, intron 1 of 8)	47358	NM_147182	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_103086	chr9	39014792	39014932	+	8.61163	NA	Intergenic	Intergenic	273438	NM_033655	79937	Hs.128474	NM_033655	HPRD:10842	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_16869	chr11	6425795	6425925	+	8.61163	NA	promoter-TSS (NM_001257325)	promoter-TSS (NM_001257325)	61	NM_001257325	322	Hs.372840	NM_001164	HPRD:04087	APBB1	FE65|MGC:9072|RIR	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)	protein-coding
19-PTNLD28-TUMOR_peak_35031	chr15	85951315	85951441	+	8.61163	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	27531	NM_006738	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_12523	chr10	26105337	26105690	+	8.61163	NA	Intergenic	Intergenic	117126	NR_120650	101929073	Hs.409816	NR_120650		LOC101929073	-	uncharacterized LOC101929073	ncRNA
19-PTNLD28-TUMOR_peak_81231	chr5	95672240	95672338	+	8.61163	NA	Intergenic	Intergenic	95574	NM_001177875	5122	Hs.78977	NM_000439	HPRD:01201	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
19-PTNLD28-TUMOR_peak_43916	chr17	78903972	78904296	+	8.61163	NA	intron (NM_020761, intron 24 of 33)	(CAGCT)n|Simple_repeat|Simple_repeat	-61507	NM_024591	79643	Hs.514560	NM_024591	HPRD:08564	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
19-PTNLD28-TUMOR_peak_9062	chr1	197771931	197772056	+	8.61163	NA	Intergenic	L1HS|LINE|L1	-27370	NR_125340	163486	Hs.125056	NM_019049	HPRD:13303	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_66217	chr3	3750524	3750647	+	8.61163	NA	Intergenic	MER41C|LTR|ERV1	-90536	NM_020873	57633	Hs.163244	NM_020873	HPRD:14320	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_94942	chr7	117448454	117448682	+	8.61163	NA	intron (NM_033427, intron 3 of 22)	LFSINE_Vert|SINE|SINE	64993	NM_033427	83992	Hs.592285	NM_033427	HPRD:09890	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_36410	chr16	14190035	14190266	+	8.61163	NA	intron (NM_014048, intron 2 of 16)	AluSz|SINE|Alu	24954	NM_014048	57496	Hs.49143	NM_014048	HPRD:17577	MKL2	MRTF-B|MRTFB|NPD001	MKL/myocardin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_94456	chr7	101397926	101398130	+	8.61163	NA	Intergenic	Intergenic	-61156	NM_001913	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_45458	chr18	43363473	43363614	+	8.61163	NA	Intergenic	Intergenic	-42002	NM_213602	284266	Hs.287692	NM_213602	HPRD:13011	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig-like lectin 15	protein-coding
19-PTNLD28-TUMOR_peak_107515	chrX	9870864	9870979	+	8.61163	NA	intron (NM_001649, intron 5 of 9)	intron (NM_001649, intron 5 of 9)	-64477	NM_001195081	100288814	Hs.722001	NM_001195081		LOC100288814	-	uncharacterized LOC100288814	protein-coding
19-PTNLD28-TUMOR_peak_4690	chr1	87689998	87690119	+	8.61026	NA	intron (NM_001290053, intron 2 of 3)	intron (NM_001290053, intron 2 of 3)	11706	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
19-PTNLD28-TUMOR_peak_3155	chr1	45792402	45792754	+	8.61026	NA	promoter-TSS (NM_032756)	promoter-TSS (NM_032756)	33	NM_032756	84842	Hs.162717	NM_032756	HPRD:17509	HPDL	4-HPPD-L|GLOXD1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding
19-PTNLD28-TUMOR_peak_88543	chr6	83775446	83775634	+	8.60665	NA	promoter-TSS (NM_198920)	promoter-TSS (NM_198920)	5	NM_198920	90025	Hs.148609	NM_198920	HPRD:12861	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
19-PTNLD28-TUMOR_peak_101152	chr8	134654384	134654524	+	8.60529	NA	Intergenic	Intergenic	-70271	NM_003033	6482	Hs.374257	NM_003033	HPRD:06219	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_98311	chr8	38856530	38856672	+	8.60529	NA	intron (NR_027878, intron 1 of 20)	intron (NR_027878, intron 1 of 20)	2096	NM_003816	8754	Hs.591852	NM_003816	HPRD:04091	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
19-PTNLD28-TUMOR_peak_70700	chr3	129063509	129063773	+	8.60282	NA	Intergenic	Intergenic	-28521	NM_006026	8971	Hs.75307	NM_006026	HPRD:04151	H1FX	H1X	H1 histone family, member X	protein-coding
19-PTNLD28-TUMOR_peak_45568	chr18	45549134	45549309	+	8.60282	NA	Intergenic	MER91B|DNA|hAT-Tip100	-91704	NM_001003652	4087	Hs.12253	NM_005901	HPRD:03221	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_45569	chr18	45549700	45549825	+	8.60282	NA	Intergenic	Intergenic	-92245	NM_001003652	4087	Hs.12253	NM_005901	HPRD:03221	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_43508	chr17	73979668	73979921	+	8.60005	NA	intron (NM_001113324, intron 1 of 3)	LTR8A|LTR|ERV1	-4279	NM_001185039	51	Hs.464137	NM_004035	HPRD:02030	ACOX1	ACOX|PALMCOX|SCOX	acyl-CoA oxidase 1, palmitoyl	protein-coding
19-PTNLD28-TUMOR_peak_65168	chr22	32077124	32077217	+	8.59744	NA	TTS (NM_173566)	TTS (NM_173566)	-50360	NM_014338	23761	Hs.420559	NM_014338	HPRD:17854	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_38678	chr16	73081910	73082272	+	8.59744	NA	5' UTR (NM_006885, exon 1 of 10)	5' UTR (NM_006885, exon 1 of 10)	183	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_55239	chr2	119481046	119481329	+	8.59744	NA	Intergenic	Intergenic	-120645	NR_110272	101927709	Hs.274529	NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
19-PTNLD28-TUMOR_peak_43110	chr17	66202311	66202452	+	8.59744	NA	Intergenic	Intergenic	7580	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_56049	chr2	139466306	139466503	+	8.59744	NA	intron (NM_007226, intron 1 of 1)	intron (NM_007226, intron 1 of 1)	71407	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_17834	chr11	32197896	32197987	+	8.59744	NA	Intergenic	Intergenic	85464	NM_002901	5954	Hs.97887	NM_002901	HPRD:04111	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1, EF-hand calcium binding domain	protein-coding
19-PTNLD28-TUMOR_peak_27931	chr13	40846157	40846329	+	8.59744	NA	Intergenic	Intergenic	-51604	NR_033877	400123	Hs.577960	NR_033877		LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
19-PTNLD28-TUMOR_peak_89492	chr6	133036504	133036624	+	8.59744	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1370	NM_004666	8876	Hs.12114	NM_004666	HPRD:04651	VNN1	HDLCQ8|Tiff66	vanin 1	protein-coding
19-PTNLD28-TUMOR_peak_65561	chr22	39610937	39611117	+	8.59744	NA	Intergenic	Intergenic	25887	NM_033016	5155	Hs.1976	NM_002608	HPRD:01815	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_29501	chr14	23623500	23623773	+	8.59407	NA	promoter-TSS (NM_182728)	promoter-TSS (NM_182728)	23	NM_182728	23428	Hs.596643	NM_012244	HPRD:11971	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
19-PTNLD28-TUMOR_peak_31229	chr14	74037772	74037878	+	8.59407	NA	intron (NM_006821, intron 1 of 2)	intron (NM_006821, intron 1 of 2)	2062	NM_006821	10965	Hs.446685	NM_006821	HPRD:10173	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_30383	chr14	54719181	54719316	+	8.59407	NA	Intergenic	Intergenic	-144425	NM_001130851	1033	Hs.84113	NM_005192	HPRD:00450	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin-dependent kinase inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_19555	chr11	67770495	67770867	+	8.59407	NA	intron (NM_030930, intron 2 of 10)	CpG-4463	914	NM_030930	81622	Hs.502989	NM_030930	HPRD:12191	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_37379	chr16	31886002	31886121	+	8.59407	NA	intron (NR_049749, intron 1 of 4)	MER57E3|LTR|ERV1	982	NM_001265588	10308	Hs.460645	NM_003414	HPRD:06883	ZNF267	HZF2	zinc finger protein 267	protein-coding
19-PTNLD28-TUMOR_peak_95333	chr7	130701054	130701257	+	8.59316	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	90634	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000226380	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
19-PTNLD28-TUMOR_peak_100940	chr8	131012265	131012433	+	8.59316	NA	intron (NR_046361, intron 1 of 13)	intron (NR_046361, intron 1 of 13)	8350	NR_049826	100847051		NR_049826	miRBase:MI0018173	MIR5194	-	microRNA 5194	ncRNA
19-PTNLD28-TUMOR_peak_68516	chr3	56898596	56898781	+	8.59316	NA	intron (NM_001289698, intron 2 of 10)	L2c|LINE|L2	51811	NM_001289698	50650	Hs.476402	NM_019555	HPRD:12480	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_46475	chr19	289683	289856	+	8.59316	NA	intron (NM_177526, intron 1 of 5)	intron (NM_177526, intron 1 of 5)	1400	NM_177543	8612	Hs.465506	NM_003712	HPRD:06180	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
19-PTNLD28-TUMOR_peak_64196	chr22	17383362	17383469	+	8.59172	NA	Intergenic	HERVL-int|LTR|ERVL	75051	NR_003607	27437	Hs.143955	NR_003607	ENSG00000229027	HSFY1P1	CECR8|HSFYL1|HSFYP1|NCRNA00016	heat shock transcription factor, Y-linked 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_72591	chr3	179372048	179372398	+	8.58941	NA	intron (NM_003940, intron 1 of 20)	intron (NM_003940, intron 1 of 20)	1290	NM_003940	8975	Hs.175322	NM_003940	HPRD:04666	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
19-PTNLD28-TUMOR_peak_30234	chr14	51134748	51135630	+	8.58941	NA	promoter-TSS (NM_021818)	promoter-TSS (NM_021818)	-118	NM_021818	60485	Hs.642842	NM_021818	HPRD:06229	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_73184	chr3	190065923	190066022	+	8.58889	NA	Intergenic	AluSc8|SINE|Alu	-25737	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_82838	chr5	142100402	142100767	+	8.58598	NA	Intergenic	Intergenic	-22949	NM_001144935	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_68782	chr3	64430960	64431239	+	8.58598	NA	Intergenic	CpG	-115923	NR_110151	101929335	Hs.476604	NR_110150		ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54800	chr2	109967753	109967892	+	8.58598	NA	intron (NM_001099289, intron 2 of 9)	intron (NM_001099289, intron 2 of 9)	-37741	NR_036224	100423027		NR_036224	miRBase:MI0015870	MIR4266	-	microRNA 4266	ncRNA
19-PTNLD28-TUMOR_peak_67054	chr3	19005115	19005294	+	8.58598	NA	Intergenic	L1HS|LINE|L1	-184813	NM_144633	131096	Hs.475656	NM_144633	HPRD:10006	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
19-PTNLD28-TUMOR_peak_26837	chr12	122795320	122795415	+	8.58598	NA	intron (NM_198240, intron 17 of 23)	intron (NM_198240, intron 17 of 23)	-44299	NM_022916	65082	Hs.592009	NM_022916	HPRD:15651	VPS33A	-	vacuolar protein sorting 33 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_108184	chrX	47432687	47432949	+	8.58598	NA	intron (NM_006950, intron 12 of 12)	intron (NM_006950, intron 12 of 12)	-8872	NM_003254	7076	Hs.522632	NM_003254	HPRD:02371	TIMP1	CLGI|EPA|EPO|HCI|TIMP	TIMP metallopeptidase inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_27252	chr12	132386668	132386935	+	8.58598	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	7522	NM_003565	8408	Hs.47061	NM_003565	HPRD:11933	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_107446	chrX	6850566	6850817	+	8.58598	NA	Intergenic	L1PA2|LINE|L1	-215210	NR_039924	100616467		NR_039924	miRBase:MI0017408	MIR4767	-	microRNA 4767	ncRNA
19-PTNLD28-TUMOR_peak_29629	chr14	25083082	25083240	+	8.58598	NA	Intergenic	LTR33A_|LTR|ERVL	-4235	NM_033423	2999	Hs.348264	NM_033423	HPRD:00290	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H (cathepsin G-like 2, protein h-CCPX)	protein-coding
19-PTNLD28-TUMOR_peak_64799	chr22	25172180	25172323	+	8.58598	NA	Intergenic	LTR8|LTR|ERV1	-1564	NM_001255975	440822	Hs.448343	NM_001008496	HPRD:17855	PIWIL3	HIWI3	piwi-like RNA-mediated gene silencing 3	protein-coding
19-PTNLD28-TUMOR_peak_32543	chr15	22646443	22646830	+	8.58598	NA	Intergenic	CpG	28605	NR_039733	100616228		NR_039733	miRBase:MI0016874	MIR4509-2	-	microRNA 4509-2	ncRNA
19-PTNLD28-TUMOR_peak_14981	chr10	95766974	95767203	+	8.58598	NA	intron (NM_001288989, intron 1 of 32)	intron (NM_001288989, intron 1 of 32)	13342	NM_001288989	51196	Hs.655033	NM_016341	HPRD:07087	PLCE1	NPHS3|PLCE|PPLC	phospholipase C, epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_21067	chr11	110066970	110067064	+	8.58598	NA	intron (NM_001260492, intron 15 of 15)	intron (NM_001260492, intron 15 of 15)	100420	NM_001260495	5962	Hs.263671	NM_002906	HPRD:01534	RDX	DFNB24	radixin	protein-coding
19-PTNLD28-TUMOR_peak_23325	chr12	19842624	19842722	+	8.58598	NA	Intergenic	MER50-int|LTR|ERV1	249158	NM_001267043	121536	Hs.126497	NM_153207		AEBP2	-	AE binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_19986	chr11	73795898	73796304	+	8.58598	NA	intron (NM_001286577, intron 21 of 32)	intron (NM_001286577, intron 21 of 32)	-75819	NM_022803	7352	Hs.101337	NM_003356	HPRD:03623	UCP3	SLC25A9	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding
19-PTNLD28-TUMOR_peak_39018	chr16	82231212	82231399	+	8.58598	NA	Intergenic	L2c|LINE|L2	-27476	NM_005792	10200	Hs.344400	NM_005792	HPRD:16111	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
19-PTNLD28-TUMOR_peak_95372	chr7	131280605	131280718	+	8.58598	NA	Intergenic	MER4C|LTR|ERV1	-39285	NM_001018111	5420	Hs.744213	NM_005397	HPRD:04025	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin-like	protein-coding
19-PTNLD28-TUMOR_peak_25253	chr12	71003706	71004084	+	8.58598	NA	promoter-TSS (NM_001206972)	promoter-TSS (NM_001206972)	-271	NM_001206972	5787	Hs.434375	NM_002837	HPRD:01474	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
19-PTNLD28-TUMOR_peak_16564	chr11	1357106	1357312	+	8.58598	NA	Intergenic	Intergenic	26271	NR_029409	255512	Hs.588291	NR_029409	ENSG00000255153	TOLLIP-AS1	-	TOLLIP antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_96898	chr8	2585641	2585778	+	8.58598	NA	intron (NR_125426, intron 1 of 2)	LTR12E|LTR|ERV1	282	NR_125426	101927815	Hs.571467	NR_125423	ENSG00000249694	LOC101927815	-	uncharacterized LOC101927815	ncRNA
19-PTNLD28-TUMOR_peak_59398	chr20	656267	656524	+	8.58598	NA	5' UTR (NM_033129, exon 1 of 2)	5' UTR (NM_033129, exon 1 of 2)	428	NM_033129	85508	Hs.355284	NM_033129	HPRD:15305	SCRT2	ZNF898B	scratch family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_7331	chr1	156571450	156571813	+	8.58522	NA	promoter-TSS (NM_015590)	promoter-TSS (NM_015590)	-352	NM_015590	54865	Hs.193832	NM_015590	HPRD:13596	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_65727	chr22	42486327	42486559	+	8.58522	NA	promoter-TSS (NR_034118)	promoter-TSS (NR_034118)	445	NM_002490	4700	Hs.274416	NM_002490	HPRD:11884	NDUFA6	B14|CI-B14|LYRM6|NADHB14	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa	protein-coding
19-PTNLD28-TUMOR_peak_14957	chr10	95205843	95205985	+	8.58229	NA	intron (NM_133337, intron 3 of 52)	intron (NM_133337, intron 3 of 52)	36160	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_16610	chr11	1848369	1848757	+	8.58229	NA	Intergenic	Intergenic	-6977	NM_001290334	90019	Hs.161031	NM_138567	HPRD:09655	SYT8	-	synaptotagmin VIII	protein-coding
19-PTNLD28-TUMOR_peak_78609	chr5	693587	694019	+	8.58163	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-293	NM_007030	11076	Hs.481466	NM_007030	HPRD:18522	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
19-PTNLD28-TUMOR_peak_18020	chr11	34672128	34672364	+	8.58141	NA	intron (NM_001206615, intron 4 of 7)	intron (NM_001206615, intron 4 of 7)	18235	NM_001206616	26298	Hs.653859	NM_012153		EHF	ESE3|ESE3B|ESEJ	ets homologous factor	protein-coding
19-PTNLD28-TUMOR_peak_48182	chr19	20012523	20012623	+	8.58141	NA	intron (NM_031218, intron 1 of 3)	LTR10B1|LTR|ERV1	851	NM_031218	81931	Hs.301059	NM_031218	HPRD:10334	ZNF93	HPF34|HTF34|TF34|ZNF505	zinc finger protein 93	protein-coding
19-PTNLD28-TUMOR_peak_31532	chr14	81901896	81902004	+	8.57192	NA	Intergenic	Intergenic	-8202	NM_001256430	85439	Hs.14248	NM_033104	HPRD:10531	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
19-PTNLD28-TUMOR_peak_74332	chr4	8308488	8308792	+	8.57192	NA	3' UTR (NM_053044, exon 9 of 9)	3' UTR (NM_053044, exon 9 of 9)	37148	NM_053044	94031	Hs.479119	NM_053044	HPRD:08821	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_72866	chr3	185420425	185420634	+	8.57192	NA	intron (NM_001007225, intron 2 of 14)	intron (NM_001007225, intron 2 of 14)	-10511	NR_027317	646600	Hs.647949	NR_027317	ENSG00000163915	C3orf65	-	chromosome 3 open reading frame 65	ncRNA
19-PTNLD28-TUMOR_peak_108098	chrX	45374587	45374702	+	8.57192	NA	intron (NR_104644, intron 2 of 3)	intron (NR_104644, intron 2 of 3)	10011	NR_104644	101927528	Hs.550772	NR_104644	ENSG00000229563	LINC01204	-	long intergenic non-protein coding RNA 1204	ncRNA
19-PTNLD28-TUMOR_peak_77964	chr4	168816471	168816669	+	8.57192	NA	Intergenic	L1PBa1|LINE|L1	-197118	NM_007193	11199	Hs.188401	NM_007193	HPRD:09724	ANXA10	ANX14	annexin A10	protein-coding
19-PTNLD28-TUMOR_peak_20069	chr11	75167774	75168044	+	8.57192	NA	intron (NM_030792, intron 5 of 16)	intron (NM_030792, intron 5 of 16)	-26235	NM_001039548	283212	Hs.292451	NM_173583	HPRD:08747	KLHL35	-	kelch-like family member 35	protein-coding
19-PTNLD28-TUMOR_peak_108413	chrX	54556227	54556554	+	8.57192	NA	promoter-TSS (NM_019067)	promoter-TSS (NM_019067)	-254	NM_001184819	54552	Hs.654677	NM_019067		GNL3L	-	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding
19-PTNLD28-TUMOR_peak_77113	chr4	135602483	135602618	+	8.56839	NA	Intergenic	HERVH-int|LTR|ERV1	-479647	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_28664	chr13	92000115	92000318	+	8.56712	NA	intron (NR_027349, intron 1 of 3)	CpG	142	NR_027349	407975	Hs.24115	NR_027349	HPRD:12617	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_38970	chr16	81474627	81474723	+	8.56712	NA	Intergenic	Intergenic	-4100	NM_198390	80790	Hs.594095	NM_030629	HPRD:10839	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_56840	chr2	169313485	169313610	+	8.56712	NA	intron (NM_203463, intron 1 of 9)	CpG	788	NM_001256126	253782	Hs.506829	NM_203463	HPRD:17258	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
19-PTNLD28-TUMOR_peak_17049	chr11	9590936	9591134	+	8.56461	NA	Intergenic	L2b|LINE|L2	-4193	NM_003390	7465	Hs.249441	NM_003390	HPRD:01907	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
19-PTNLD28-TUMOR_peak_44608	chr18	11851941	11852072	+	8.56371	NA	exon (NM_020412, exon 1 of 1)	exon (NM_020412, exon 1 of 1)	617	NM_020412	57132	Hs.656244	NM_020412	HPRD:12106	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_47322	chr19	11449622	11450031	+	8.56371	NA	intron (NM_004283, intron 1 of 4)	intron (NM_004283, intron 1 of 4)	518	NM_004283	9545	Hs.744916	NM_004283	HPRD:05070	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_38216	chr16	66398708	66398843	+	8.56371	NA	Intergenic	L2|LINE|L2	-1750	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_26850	chr12	122949306	122949490	+	8.56371	NA	Intergenic	AluSx3|SINE|Alu	36222	NM_017612	55596	Hs.37706	NM_017612		ZCCHC8	-	zinc finger, CCHC domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_69801	chr3	112140406	112140539	+	8.56371	NA	Intergenic	HERVH-int|LTR|ERV1	77936	NM_001085357	151888	Hs.445162	NM_181780	HPRD:06392	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
19-PTNLD28-TUMOR_peak_93058	chr7	69928688	69928800	+	8.56145	NA	intron (NM_001127231, intron 5 of 17)	intron (NM_001127231, intron 5 of 17)	-668779	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_98863	chr8	56851975	56852288	+	8.56145	NA	intron (NM_001111097, intron 1 of 12)	intron (NM_001111097, intron 1 of 12)	59745	NM_002350	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_47076	chr19	8631839	8632081	+	8.56145	NA	intron (NM_012335, intron 1 of 27)	AluSg7|SINE|Alu	10371	NM_012335	4542	Hs.465818	NM_012335	HPRD:03282	MYO1F	-	myosin IF	protein-coding
19-PTNLD28-TUMOR_peak_38677	chr16	73081241	73081684	+	8.56145	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	812	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_109945	chrX	153402140	153402384	+	8.56145	NA	Intergenic	Intergenic	-7436	NM_020061	5956	Hs.247787	NM_020061	HPRD:02366	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1 (cone pigments), long-wave-sensitive	protein-coding
19-PTNLD28-TUMOR_peak_36973	chr16	27376700	27376915	+	8.56145	NA	TTS (NM_000418)	TTS (NM_000418)	-36676	NM_181079	50615	Hs.210546	NM_021798		IL21R	CD360|NILR	interleukin 21 receptor	protein-coding
19-PTNLD28-TUMOR_peak_31507	chr14	81442120	81442251	+	8.56145	NA	intron (NM_001018036, intron 1 of 8)	intron (NM_001018036, intron 1 of 8)	20316	NM_000369	7253	Hs.160411	NM_000369	HPRD:04537	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_78420	chr4	187543207	187543319	+	8.56145	NA	intron (NM_005245, intron 9 of 26)	intron (NM_005245, intron 9 of 26)	-66726	NM_005958	4543	Hs.243467	NM_005958	HPRD:02812	MTNR1A	MEL-1A-R|MT1	melatonin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_32158	chr14	103243782	103243909	+	8.56145	NA	promoter-TSS (NM_145726)	promoter-TSS (NM_145726)	29	NM_145725	7187	Hs.510528	NM_003300	HPRD:03539	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
19-PTNLD28-TUMOR_peak_11067	chr1	235257201	235257369	+	8.56139	NA	Intergenic	Intergenic	33967	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_55739	chr2	131862778	131862966	+	8.56139	NA	non-coding (NR_049790, exon 1 of 6)	non-coding (NR_049790, exon 1 of 6)	452	NM_017958	55041	Hs.469944	NM_017958	HPRD:15144	PLEKHB2	EVT2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
19-PTNLD28-TUMOR_peak_1785	chr1	27855756	27855931	+	8.56039	NA	Intergenic	Intergenic	-39165	NM_001201404	10163	Hs.469244	NM_006990	HPRD:05796	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92928	chr7	65879386	65879559	+	8.56039	NA	Intergenic	AluJb|SINE|Alu	-14077	NR_026873	285908	Hs.50755	NM_181722	HPRD:14160	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
19-PTNLD28-TUMOR_peak_54483	chr2	100938544	100939134	+	8.56039	NA	5' UTR (NM_198461, exon 1 of 12)	5' UTR (NM_198461, exon 1 of 12)	356	NM_198461	164832	Hs.21380	NM_198461	HPRD:13503	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_99531	chr8	94947692	94947816	+	8.56039	NA	Intergenic	Intergenic	18475	NM_001161781	54704	Hs.22265	NM_018444	HPRD:16185	PDP1	PDH|PDP|PDPC|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_43808	chr17	77036859	77036958	+	8.56039	NA	intron (NM_198593, intron 1 of 3)	AluJb|SINE|Alu	6527	NM_198593	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_19580	chr11	68038714	68038818	+	8.56039	NA	intron (NM_001300913, intron 1 of 4)	intron (NM_001300913, intron 1 of 4)	703	NM_001300913	53838	Hs.303025	NM_022338	HPRD:10704	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_36137	chr16	8935648	8935767	+	8.56039	NA	intron (NM_000303, intron 7 of 7)	HERVH-int|LTR|ERV1	19960	NM_001278262	23589	Hs.632184	NM_014316	HPRD:08515	CARHSP1	CRHSP-24|CSDC1	calcium regulated heat stable protein 1, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_28802	chr13	99305726	99305881	+	8.56039	NA	Intergenic	MIRc|SINE|MIR	-76398	NM_001286649	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_79725	chr5	43253132	43253259	+	8.55792	NA	intron (NR_072980, intron 2 of 3)	AluJr|SINE|Alu	60241	NR_072980	167359	Hs.25845	NM_153361	HPRD:14618	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_79366	chr5	32806235	32806336	+	8.55792	NA	Intergenic	Intergenic	94847	NM_001204375	4883	Hs.13528	NM_000908	HPRD:00167	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_90380	chr6	160941018	160941130	+	8.55792	NA	Intergenic	Intergenic	-8918	NR_028093	80350	Hs.654503	NM_024492	HPRD:17441	LPAL2	APOA2|APOAL|APOARGC	lipoprotein, Lp(a)-like 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30706	chr14	63003016	63003305	+	8.55792	NA	Intergenic	L1HS|LINE|L1	-396469	NR_104063	101954204	Hs.607093	NR_104063		LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
19-PTNLD28-TUMOR_peak_6060	chr1	121156878	121157124	+	8.55792	NA	Intergenic	LTR16C|LTR|ERVL	-17236	NR_104189	100873165	Hs.568525	NR_104189		SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23082	chr12	12234841	12235136	+	8.55792	NA	intron (NM_138722, intron 2 of 5)	intron (NM_138722, intron 2 of 5)	10586	NM_138722	79370	Hs.210343	NM_030766	HPRD:05841	BCL2L14	BCLG	BCL2-like 14 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_33265	chr15	42083266	42083429	+	8.55792	NA	intron (NR_049762, intron 2 of 28)	intron (NR_049762, intron 2 of 28)	16715	NR_049761	23005	Hs.513661	NM_014994	HPRD:17465	MAPKBP1	JNKBP-1	mitogen-activated protein kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_12373	chr10	23003422	23003627	+	8.55792	NA	promoter-TSS (NM_005028)	promoter-TSS (NM_005028)	-21	NM_005028	5305	Hs.57079	NM_005028	HPRD:11931	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_45051	chr18	26001861	26002081	+	8.55792	NA	Intergenic	L1HS|LINE|L1	-244526	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_78724	chr5	3517669	3517776	+	8.55792	NA	intron (NR_033898, intron 2 of 4)	intron (NR_033898, intron 2 of 4)	-13604	NR_104618	102467075	Hs.652949	NR_104618		LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA
19-PTNLD28-TUMOR_peak_98270	chr8	38420355	38420448	+	8.55792	NA	Intergenic	Intergenic	-34221	NM_207412	389649	Hs.546586	NM_207412	HPRD:13474	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_12587	chr10	27947883	27948035	+	8.55792	NA	Intergenic	Intergenic	-85585	NR_121652	101929202	Hs.568843	NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25005	chr12	65138529	65138787	+	8.55792	NA	exon (NM_002076, exon 5 of 14)	exon (NM_002076, exon 5 of 14)	14568	NM_002076	2799	Hs.334534	NM_002076	HPRD:09637	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_23823	chr12	42375685	42375814	+	8.55792	NA	Intergenic	Intergenic	162924	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_53427	chr2	72012216	72012338	+	8.55792	NA	Intergenic	Intergenic	318445	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_104787	chr9	98789746	98789884	+	8.55792	NA	Intergenic	CpG	-5778	NR_024129	100188953	Hs.434310	NR_024129	ENSG00000225194	LINC00092	NCRNA00092|bA346B7.1	long intergenic non-protein coding RNA 92	ncRNA
19-PTNLD28-TUMOR_peak_45344	chr18	38431005	38431316	+	8.55792	NA	Intergenic	Intergenic	669401	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
19-PTNLD28-TUMOR_peak_102936	chr9	36317836	36318098	+	8.55792	NA	Intergenic	Intergenic	-40914	NM_001190388	10020	Hs.5920	NM_005476	HPRD:04825	GNE	DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
19-PTNLD28-TUMOR_peak_41510	chr17	40355517	40355762	+	8.55792	NA	intron (NM_012448, intron 16 of 18)	L3|LINE|CR1	-9089	NM_032484	84514	Hs.38039	NM_032484	HPRD:16352	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_36816	chr16	22960183	22960333	+	8.55792	NA	Intergenic	Intergenic	134398	NM_006043	9956	Hs.115830	NM_006043	HPRD:04957	HS3ST2	30ST2|3OST2	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_77685	chr4	154163988	154164291	+	8.55792	NA	intron (NM_015271, intron 1 of 11)	intron (NM_015271, intron 1 of 11)	38541	NM_015271	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_85250	chr6	9934054	9934175	+	8.55792	NA	Intergenic	Intergenic	-478437	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49242	chr19	42954535	42954830	+	8.55792	NA	intron (NR_073179, intron 1 of 1)	intron (NR_073179, intron 1 of 1)	-7546	NM_198477	284340	Hs.445586	NM_198477		CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	chemokine (C-X-C motif) ligand 17	protein-coding
19-PTNLD28-TUMOR_peak_41653	chr17	41755315	41755438	+	8.55792	NA	Intergenic	Intergenic	-16114	NM_001040002	4222	Hs.438	NM_004527	HPRD:02537	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_55278	chr2	119924794	119924887	+	8.55792	NA	Intergenic	Intergenic	-8369	NM_182528	165257	Hs.433493	NM_182528	HPRD:12713	C1QL2	C1QTNF10|CTRP10	complement component 1, q subcomponent-like 2	protein-coding
19-PTNLD28-TUMOR_peak_109174	chrX	110038956	110039315	+	8.55792	NA	promoter-TSS (NM_145234)	promoter-TSS (NM_145234)	-59	NM_145234	91851	Hs.496587	NM_145234	HPRD:02285	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_98817	chr8	55372070	55372201	+	8.55792	NA	exon (NM_022454, exon 2 of 2)	exon (NM_022454, exon 2 of 2)	1640	NM_022454	64321	Hs.98367	NM_022454	HPRD:18085	SOX17	VUR3	SRY (sex determining region Y)-box 17	protein-coding
19-PTNLD28-TUMOR_peak_108056	chrX	42574766	42574889	+	8.55792	NA	Intergenic	Intergenic	62659	NR_002191	80316	Hs.127689	NM_025210		PPP1R2P9	I-4	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_41435	chr17	39640576	39640921	+	8.55792	NA	Intergenic	Intergenic	-3356	NM_002280	3886	Hs.73082	NM_002280	HPRD:04138	KRT35	HA5|Ha-5|KRTHA5|hHa5	keratin 35	protein-coding
19-PTNLD28-TUMOR_peak_80826	chr5	76612809	76612925	+	8.55792	NA	intron (NM_001029851, intron 2 of 18)	L2b|LINE|L2	106161	NM_001029852	8622	Hs.584830	NM_003719	HPRD:04546	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
19-PTNLD28-TUMOR_peak_97918	chr8	28451675	28451793	+	8.55792	NA	Intergenic	Intergenic	-89035	NR_036250	100422903		NR_036250	miRBase:MI0015896	MIR4288	-	microRNA 4288	ncRNA
19-PTNLD28-TUMOR_peak_26877	chr12	123376289	123376404	+	8.55699	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	4366	NM_024667	79720	Hs.507162	NM_024667	HPRD:07794	VPS37B	-	vacuolar protein sorting 37 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_84081	chr5	173169077	173169350	+	8.54998	NA	intron (NR_108027, intron 1 of 2)	AluJr|SINE|Alu	3999	NR_108027	101928136	Hs.449267	NR_108027		LINC01484	-	long intergenic non-protein coding RNA 1484	ncRNA
19-PTNLD28-TUMOR_peak_76595	chr4	111105689	111105896	+	8.54998	NA	intron (NM_001130721, intron 2 of 4)	intron (NM_001130721, intron 2 of 4)	13979	NM_001130721	79071	Hs.412939	NM_024090	HPRD:13269	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
19-PTNLD28-TUMOR_peak_88319	chr6	74103147	74103299	+	8.54998	NA	Intergenic	Intergenic	-1062	NM_018665	55510	Hs.125507	NM_018665	HPRD:10448	DDX43	CT13|HAGE	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding
19-PTNLD28-TUMOR_peak_67696	chr3	42002883	42003155	+	8.54964	NA	intron (NM_017886, intron 1 of 36)	CpG	641	NM_017886	54986	Hs.656192	NM_017886	HPRD:07928	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_66957	chr3	16351226	16351336	+	8.54337	NA	Intergenic	MIR3|SINE|MIR	44614	NM_138381	92106	Hs.655449	NM_138381	HPRD:14446	OXNAD1	-	oxidoreductase NAD-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_15760	chr10	116061665	116061917	+	8.54337	NA	intron (NM_001001936, intron 12 of 18)	intron (NM_001001936, intron 12 of 18)	62778	NM_001272046	340706	Hs.197741	NM_198496		VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_10920	chr1	233463838	233464126	+	8.54321	NA	exon (NM_032435, exon 1 of 10)	exon (NM_032435, exon 1 of 10)	468	NM_032435	84451	Hs.547779	NM_032435	HPRD:10087	KIAA1804	MLK4|dJ862P8.3	mixed lineage kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_14631	chr10	82261831	82261985	+	8.54321	NA	intron (NM_001128309, intron 2 of 5)	L2a|LINE|L2	-29098	NR_120662	102723703	Hs.308615	NR_120662		LOC102723703	-	uncharacterized LOC102723703	ncRNA
19-PTNLD28-TUMOR_peak_95255	chr7	129781462	129781591	+	8.54120	NA	Intergenic	CpG	63812	NM_032842	84928	Hs.267245	NM_032842	HPRD:07871	TMEM209	NET31	transmembrane protein 209	protein-coding
19-PTNLD28-TUMOR_peak_86801	chr6	33167759	33167891	+	8.54120	NA	promoter-TSS (NM_006979)	promoter-TSS (NM_006979)	648	NM_021976	6257	Hs.388034	NM_021976	HPRD:01578	RXRB	DAUDI6|H-2RIIBP|NR2B2|RCoR-1	retinoid X receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_86021	chr6	25007519	25007650	+	8.54115	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	34812	NM_001286446	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_55040	chr2	113552507	113552782	+	8.54115	NA	Intergenic	MIR3|SINE|MIR	-9673	NM_000575	3552	Hs.1722	NM_000575		IL1A	IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_70707	chr3	129118940	129119197	+	8.54032	NA	promoter-TSS (NR_003111)	promoter-TSS (NR_003111)	-786	NR_003111	132241	Hs.477537	NR_003111	ENSG00000251474	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_68219	chr3	50383191	50383287	+	8.54032	NA	promoter-TSS (NM_015896)	promoter-TSS (NM_015896)	-83	NM_015896	51364	Hs.526735	NM_015896	HPRD:06145	ZMYND10	BLU|CILD22|FLU	zinc finger, MYND-type containing 10	protein-coding
19-PTNLD28-TUMOR_peak_109366	chrX	123093960	123094358	+	8.54032	NA	promoter-TSS (NM_001042749)	promoter-TSS (NM_001042749)	-251	NM_001042749	10735	Hs.496710	NM_006603	HPRD:05077	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_89807	chr6	144606292	144606510	+	8.54032	NA	Intergenic	CpG	-6472	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_41287	chr17	37366064	37366227	+	8.54032	NA	TTS (NM_198993)	TTS (NM_198993)	9609	NM_000981	6143	Hs.381061	NM_000981	HPRD:01594	RPL19	L19	ribosomal protein L19	protein-coding
19-PTNLD28-TUMOR_peak_52706	chr2	48710767	48710910	+	8.54032	NA	intron (NR_024188, intron 13 of 21)	AluYc3|SINE|Alu	42930	NR_024188	129285	Hs.654619	NM_152994	HPRD:17294	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1, regulatory subunit 21	protein-coding
19-PTNLD28-TUMOR_peak_65262	chr22	35653666	35653815	+	8.53999	NA	intron (NM_001003681, intron 1 of 10)	CpG	295	NM_001003681	10042	Hs.588815	NM_005487	HPRD:05267	HMGXB4	HMG2L1|HMGBCG|THC211630	HMG box domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_72947	chr3	186412609	186412727	+	8.53999	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22430	NM_001102416	3827	Hs.77741	NM_000893		KNG1	BDK|BK|KNG	kininogen 1	protein-coding
19-PTNLD28-TUMOR_peak_61731	chr20	48477315	48477558	+	8.53999	NA	intron (NR_048539, intron 7 of 13)	L2a|LINE|L2	48186	NM_001260491	23315	Hs.444202	NM_015266	HPRD:18062	SLC9A8	NHE-8|NHE8	solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8	protein-coding
19-PTNLD28-TUMOR_peak_107447	chrX	6850899	6851047	+	8.53999	NA	Intergenic	L1PA2|LINE|L1	-214928	NR_039924	100616467		NR_039924	miRBase:MI0017408	MIR4767	-	microRNA 4767	ncRNA
19-PTNLD28-TUMOR_peak_28263	chr13	51484161	51484487	+	8.53999	NA	intron (NM_024570, intron 1 of 10)	CpG	510	NM_001142279	79621	Hs.306291	NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_20800	chr11	100551921	100552098	+	8.53999	NA	Intergenic	Intergenic	-6398	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_38007	chr16	56985319	56985423	+	8.53999	NA	Intergenic	Intergenic	-10464	NM_000078	1071	Hs.89538	NM_000078	HPRD:00325	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein, plasma	protein-coding
19-PTNLD28-TUMOR_peak_96677	chr7	156629269	156629384	+	8.53999	NA	intron (NM_022458, intron 2 of 16)	intron (NM_022458, intron 2 of 16)	56576	NM_022458	64327	Hs.209989	NM_022458	HPRD:05700	LMBR1	ACHP|C7orf2|DIF14|PPD2|TPT|ZRS	limb development membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20053	chr11	74991329	74991443	+	8.53999	NA	intron (NM_004041, intron 7 of 15)	intron (NM_004041, intron 7 of 15)	39436	NM_001195528	100507050	Hs.577323	NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein-like	protein-coding
19-PTNLD28-TUMOR_peak_77895	chr4	164087576	164087668	+	8.53999	NA	exon (NM_001128931, exon 1 of 8)	exon (NM_001128931, exon 1 of 8)	451	NM_138386	92345	Hs.129095	NM_138386	HPRD:10054	NAF1	-	nuclear assembly factor 1 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_2536	chr1	38218816	38218910	+	8.53999	NA	exon (NM_001099439, exon 5 of 17)	exon (NM_001099439, exon 5 of 17)	11961	NM_001099439	284656	Hs.129435	NM_173641	HPRD:08163	EPHA10	-	EPH receptor A10	protein-coding
19-PTNLD28-TUMOR_peak_40237	chr17	12692821	12692966	+	8.53999	NA	promoter-TSS (NM_014859)	promoter-TSS (NM_014859)	64	NM_014859	9912	Hs.499758	NM_014859	HPRD:13810	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding
19-PTNLD28-TUMOR_peak_44104	chr17	80382621	80382715	+	8.53999	NA	intron (NM_173620, intron 3 of 11)	intron (NM_173620, intron 3 of 11)	-6155	NM_175902	79701	Hs.187505	NM_024648	HPRD:13386	OGFOD3	C17orf101	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_33705	chr15	57860231	57860385	+	8.53999	NA	Intergenic	CR1_Mam|LINE|CR1	-23794	NR_104368	145781	Hs.437256	NM_001018090		GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
19-PTNLD28-TUMOR_peak_59863	chr20	13202334	13202574	+	8.53999	NA	promoter-TSS (NM_080826)	promoter-TSS (NM_080826)	36	NM_080826	140862	Hs.559353	NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1, angiogenesis inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_26752	chr12	121958521	121958719	+	8.53999	NA	intron (NM_001005366, intron 9 of 22)	intron (NM_001005366, intron 9 of 22)	59744	NM_001005366	84678	Hs.524800	NM_032590	HPRD:12362	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine (K)-specific demethylase 2B	protein-coding
19-PTNLD28-TUMOR_peak_83539	chr5	158478596	158478807	+	8.53999	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	48087	NM_001290360	1879	Hs.573143	NM_024007	HPRD:01256	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
19-PTNLD28-TUMOR_peak_87276	chr6	38942503	38942746	+	8.53999	NA	intron (NM_001206927, intron 85 of 92)	intron (NM_001206927, intron 85 of 92)	-21741	NR_038401	100131047	Hs.670957	NR_038401		LOC100131047	-	uncharacterized LOC100131047	ncRNA
19-PTNLD28-TUMOR_peak_65057	chr22	30620103	30620435	+	8.53999	NA	Intergenic	Intergenic	22571	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_26016	chr12	106477877	106478245	+	8.53999	NA	intron (NM_014840, intron 3 of 6)	intron (NM_014840, intron 3 of 6)	55750	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_216	chr1	2208767	2208897	+	8.53999	NA	intron (NM_003036, intron 1 of 6)	THE1A|LTR|ERVL-MaLR	48698	NM_003036	6497	Hs.656507	NM_003036	HPRD:01271	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_81808	chr5	122425903	122426021	+	8.53999	NA	exon (NM_001136239, exon 2 of 8)	exon (NM_001136239, exon 2 of 8)	1121	NM_001136239	93166	Hs.135118	NM_001136239	ENSG00000061455	PRDM6	-	PR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_9539	chr1	204476598	204476988	+	8.53848	NA	Intergenic	AluSx1|SINE|Alu	-8714	NM_001278518	4194	Hs.497492	NM_002393	HPRD:04082	MDM4	HDMX|MDMX|MRP1	MDM4, p53 regulator	protein-coding
19-PTNLD28-TUMOR_peak_94347	chr7	100423027	100423182	+	8.53848	NA	intron (NM_004444, intron 1 of 16)	intron (NM_004444, intron 1 of 16)	2039	NM_004444	2050	Hs.437008	NM_004444	HPRD:02481	EPHB4	HTK|MYK1|TYRO11	EPH receptor B4	protein-coding
19-PTNLD28-TUMOR_peak_704	chr1	10752563	10752659	+	8.53569	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	104122	NM_001079843	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_10459	chr1	226070749	226071037	+	8.53569	NA	promoter-TSS (NM_014698)	promoter-TSS (NM_014698)	-473	NM_014698	9725	Hs.119387	NM_014698	HPRD:13817	TMEM63A	KIAA0792	transmembrane protein 63A	protein-coding
19-PTNLD28-TUMOR_peak_52580	chr2	46713730	46713972	+	8.53569	NA	Intergenic	Intergenic	7147	NM_001145051	388946	Hs.733348	NM_001145051	ENSG00000187600	TMEM247	-	transmembrane protein 247	protein-coding
19-PTNLD28-TUMOR_peak_83403	chr5	154140612	154140760	+	8.53569	NA	intron (NM_015315, intron 1 of 18)	intron (NM_015315, intron 1 of 18)	48224	NM_015315	23367	Hs.292078	NM_015315	HPRD:11225	LARP1	LARP	La ribonucleoprotein domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_105281	chr9	111695955	111696117	+	8.53569	NA	promoter-TSS (NM_017832)	promoter-TSS (NM_017832)	572	NM_003640	8518	Hs.494738	NM_003640	HPRD:04763	IKBKAP	DYS|ELP1|FD|IKAP|IKI3|TOT1	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_38107	chr16	58061635	58061737	+	8.53569	NA	intron (NM_002428, intron 1 of 9)	intron (NM_002428, intron 1 of 9)	2404	NM_002428	4324	Hs.80343	NM_002428	HPRD:03775	MMP15	MT2-MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_90257	chr6	158423383	158423527	+	8.53464	NA	TTS (NR_046796)	TTS (NR_046796)	1316	NR_046796	100874300	Hs.742238	NR_046796		SYNJ2-IT1	-	SYNJ2 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_55117	chr2	114298877	114299156	+	8.53464	NA	intron (NR_121187, intron 1 of 1)	intron (NR_121187, intron 1 of 1)	1234	NR_121190	101929127	Hs.552787	NR_121188		PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16774	chr11	3829716	3829834	+	8.53464	NA	promoter-TSS (NR_027016)	promoter-TSS (NR_027016)	9	NM_014489	27315	Hs.133968	NM_014489	HPRD:17016	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
19-PTNLD28-TUMOR_peak_106563	chr9	136024827	136025054	+	8.53464	NA	promoter-TSS (NM_001042368)	promoter-TSS (NM_001042368)	-333	NM_001042368	5900	Hs.106185	NM_006266	HPRD:03371	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
19-PTNLD28-TUMOR_peak_37189	chr16	29974120	29974211	+	8.53464	NA	intron (NM_194280, intron 1 of 5)	intron (NM_194280, intron 1 of 5)	814	NM_001083613	124446	Hs.460574	NM_194280	HPRD:18546	TMEM219	IGFBP-3R	transmembrane protein 219	protein-coding
19-PTNLD28-TUMOR_peak_17982	chr11	34288038	34288283	+	8.53464	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	91395	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_7877	chr1	165128099	165128292	+	8.53464	NA	Intergenic	Intergenic	197283	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_34786	chr15	81071467	81071589	+	8.53464	NA	promoter-TSS (NM_001293304)	promoter-TSS (NM_001293304)	-156	NM_001293298	57214	Hs.459088	NM_018689	HPRD:10519	CEMIP	CCSP1|KIAA1199|TMEM2L	cell migration inducing protein, hyaluronan binding	protein-coding
19-PTNLD28-TUMOR_peak_82505	chr5	138559606	138559772	+	8.53180	NA	Intergenic	SVA_D|Other|Other	-25624	NM_001037633	64374	Hs.483521	NM_022464	HPRD:12150	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_102115	chr9	6630920	6631190	+	8.53180	NA	intron (NM_000170, intron 2 of 24)	intron (NM_000170, intron 2 of 24)	14637	NM_000170	2731	Hs.584238	NM_000170	HPRD:01996	GLDC	GCE|GCSP|HYGN1	glycine dehydrogenase (decarboxylating)	protein-coding
19-PTNLD28-TUMOR_peak_30053	chr14	43531565	43531840	+	8.53180	NA	Intergenic	L1PA2|LINE|L1	1444797	NM_032135	84075	Hs.307086	NM_032135	HPRD:12638	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19-PTNLD28-TUMOR_peak_78622	chr5	946269	946636	+	8.53180	NA	Intergenic	Intergenic	51003	NR_104614	100506688	Hs.532063	NM_001242737		LOC100506688	-	uncharacterized LOC100506688	ncRNA
19-PTNLD28-TUMOR_peak_33022	chr15	34806958	34807204	+	8.53180	NA	Intergenic	CpG	13491	NR_036050	100302160		NR_036050		MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
19-PTNLD28-TUMOR_peak_39885	chr17	5688809	5688962	+	8.53180	NA	intron (NR_040000, intron 1 of 3)	intron (NR_040000, intron 1 of 3)	13331	NR_040000	339166	Hs.736088	NR_040000	ENSG00000179314	LOC339166	-	uncharacterized LOC339166	ncRNA
19-PTNLD28-TUMOR_peak_100028	chr8	107775381	107775527	+	8.53180	NA	intron (NM_139166, intron 1 of 1)	intron (NM_139166, intron 1 of 1)	7018	NM_139166	137735	Hs.374668	NM_139166	HPRD:11608	ABRA	STARS	actin-binding Rho activating protein	protein-coding
19-PTNLD28-TUMOR_peak_51474	chr2	20761518	20761653	+	8.53180	NA	Intergenic	MER21B|LTR|ERVL	30723	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_48899	chr19	38900557	38900670	+	8.53180	NA	TTS (NM_174905)	TTS (NM_174905)	6838	NM_174905	147965	Hs.355162	NM_174905	HPRD:14077	FAM98C	-	family with sequence similarity 98, member C	protein-coding
19-PTNLD28-TUMOR_peak_65850	chr22	44577826	44577974	+	8.53180	NA	intron (NM_001137605, intron 2 of 13)	intron (NM_001137605, intron 2 of 13)	1130	NM_022141	64098	Hs.658995	NM_022141	HPRD:16285	PARVG	-	parvin, gamma	protein-coding
19-PTNLD28-TUMOR_peak_57054	chr2	175206355	175206448	+	8.53180	NA	Intergenic	CpG	6580	NM_001145250	100131390	Hs.516603	NM_001145250		SP9	ZNF990	Sp9 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_79030	chr5	14491679	14491826	+	8.53180	NA	intron (NM_007118, intron 48 of 56)	intron (NM_007118, intron 48 of 56)	-90139	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	family with sequence similarity 105, member A	protein-coding
19-PTNLD28-TUMOR_peak_91088	chr7	5569249	5569486	+	8.52792	NA	intron (NM_001101, intron 1 of 5)	CpG-23985	865	NM_001101	60	Hs.520640	NM_001101	HPRD:00032	ACTB	BRWS1|PS1TP5BP1	actin, beta	protein-coding
19-PTNLD28-TUMOR_peak_3685	chr1	55388890	55389069	+	8.52581	NA	Intergenic	Intergenic	-36058	NM_014762	1718	Hs.498727	NM_014762	HPRD:05916	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
19-PTNLD28-TUMOR_peak_80678	chr5	73497335	73497488	+	8.52581	NA	Intergenic	Intergenic	106739	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_37837	chr16	53124899	53125000	+	8.52581	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	36004	NM_025134	80205	Hs.59159	NM_025134	HPRD:08570	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_23261	chr12	15941767	15942022	+	8.52581	NA	intron (NM_004447, intron 1 of 20)	CpG	616	NM_004447	2059	Hs.591160	NM_004447	HPRD:02563	EPS8	-	epidermal growth factor receptor pathway substrate 8	protein-coding
19-PTNLD28-TUMOR_peak_63595	chr21	41032152	41032268	+	8.52581	NA	intron (NM_033170, intron 2 of 2)	MIR3|SINE|MIR	2963	NM_033170	10317	Hs.733638	NM_006057	HPRD:06818	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_46531	chr19	995442	995598	+	8.52581	NA	TTS (NM_024100)	TTS (NM_024100)	-4917	NM_138690	116444	Hs.660378	NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate receptor, ionotropic, N-methyl-D-aspartate 3B	protein-coding
19-PTNLD28-TUMOR_peak_10919	chr1	233463462	233463565	+	8.52559	NA	promoter-TSS (NM_032435)	promoter-TSS (NM_032435)	-1	NM_032435	84451	Hs.547779	NM_032435	HPRD:10087	KIAA1804	MLK4|dJ862P8.3	mixed lineage kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_10725	chr1	229366104	229366569	+	8.52559	NA	Intergenic	Intergenic	-40473	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_44302	chr18	2985024	2985155	+	8.51784	NA	intron (NM_014646, intron 1 of 19)	intron (NM_014646, intron 1 of 19)	26856	NM_014646	9663	Hs.132342	NM_014646	HPRD:16114	LPIN2	-	lipin 2	protein-coding
19-PTNLD28-TUMOR_peak_94295	chr7	99956307	99956432	+	8.51784	NA	exon (NM_178238, exon 2 of 4)	exon (NM_178238, exon 2 of 4)	743	NM_178238	29990	Hs.632314	NM_013440		PILRB	FDFACT1|FDFACT2	paired immunoglobin-like type 2 receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_95107	chr7	128001638	128002012	+	8.51784	NA	promoter-TSS (NM_001114726)	promoter-TSS (NM_001114726)	-86	NM_001114726	401399	Hs.381096	NM_001114726	ENSG00000224940	PRRT4	-	proline-rich transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_100715	chr8	126671110	126671231	+	8.51784	NA	Intergenic	Intergenic	226719	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_46741	chr19	3603433	3603660	+	8.51784	NA	intron (NM_201636, intron 1 of 3)	intron (NM_201636, intron 1 of 3)	3285	NM_001060	6915	Hs.442530	NM_001060	HPRD:01768	TBXA2R	BDPLT13|TXA2-R	thromboxane A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_7241	chr1	155904826	155904941	+	8.51531	NA	promoter-TSS (NM_014949)	promoter-TSS (NM_014949)	-695	NM_014949	22889	Hs.24656	NM_014949	HPRD:17198	KIAA0907	BLOM7	KIAA0907	protein-coding
19-PTNLD28-TUMOR_peak_1004	chr1	15944632	15944730	+	8.51370	NA	intron (NM_032341, intron 1 of 9)	intron (NM_032341, intron 1 of 9)	728	NM_032341	84301	Hs.718857	NM_032341		DDI2	-	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_92664	chr7	55639981	55640318	+	8.51370	NA	promoter-TSS (NM_030796)	promoter-TSS (NM_030796)	51	NM_030796	81552	Hs.488307	NM_030796	HPRD:08526	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43208	chr17	70350261	70350384	+	8.51370	NA	Intergenic	Intergenic	233161	NM_000346	6662	Hs.647409	NM_000346	HPRD:06427	SOX9	CMD1|CMPD1|SRA1	SRY (sex determining region Y)-box 9	protein-coding
19-PTNLD28-TUMOR_peak_71227	chr3	139192059	139192175	+	8.51370	NA	intron (NM_004164, intron 1 of 3)	Tigger12c|DNA|TcMar-Tigger	3235	NM_004164	5948	Hs.655516	NM_004164	HPRD:07184	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2, cellular	protein-coding
19-PTNLD28-TUMOR_peak_13190	chr10	43698227	43698351	+	8.51370	NA	intron (NM_001282862, intron 3 of 12)	(CCCCAG)n|Simple_repeat|Simple_repeat	26898	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_82	chr1	936075	936300	+	8.51179	NA	promoter-TSS (NM_021170)	promoter-TSS (NM_021170)	-635	NM_021170	57801	Hs.154029	NM_021170	HPRD:16273	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_62547	chr20	61568639	61568850	+	8.51102	NA	promoter-TSS (NM_017896)	promoter-TSS (NM_017896)	560	NM_080797	11083	Hs.517172	NM_022105	HPRD:10363	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
19-PTNLD28-TUMOR_peak_39911	chr17	6455226	6455531	+	8.51102	NA	intron (NM_031220, intron 1 of 19)	MIR3|SINE|MIR	4499	NM_001165966	83394	Hs.183983	NM_031220	HPRD:07498	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
19-PTNLD28-TUMOR_peak_86878	chr6	33678757	33678991	+	8.51102	NA	intron (NM_032340, intron 1 of 3)	MER5B|DNA|hAT-Charlie	654	NM_032340	84300	Hs.745020	NM_032340	HPRD:12847	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_50287	chr19	54747093	54747270	+	8.51102	NA	promoter-TSS (NM_024318)	promoter-TSS (NM_024318)	-470	NM_001081450	11025	Hs.631592	NM_006864	HPRD:11995	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIRB	leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3	protein-coding
19-PTNLD28-TUMOR_peak_102775	chr9	34379390	34379584	+	8.51066	NA	intron (NM_001252195, intron 4 of 4)	intron (NM_001252195, intron 4 of 4)	2111	NM_147168	84688	Hs.50334	NM_032596	HPRD:12949	C9orf24	CBE1|NYD-SP22|SMRP1|bA573M23.4	chromosome 9 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_10569	chr1	227918152	227918262	+	8.50821	NA	TTS (NM_023007)	TTS (NM_023007)	1967	NR_024486	100130093	Hs.745334	NR_024485	ENSG00000143740	LOC100130093	-	uncharacterized LOC100130093	ncRNA
19-PTNLD28-TUMOR_peak_60219	chr20	23618512	23618668	+	8.50535	NA	promoter-TSS (NM_000099)	promoter-TSS (NM_000099)	95	NM_000099	1471	Hs.304682	NM_000099	HPRD:05056	CST3	ARMD11	cystatin C	protein-coding
19-PTNLD28-TUMOR_peak_96774	chr7	158627910	158628077	+	8.50535	NA	Intergenic	LTR13A|LTR|ERVK	-5674	NM_020728	57488	Hs.490795	NM_020728	HPRD:13053	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin-like protein 2	protein-coding
19-PTNLD28-TUMOR_peak_77849	chr4	159735886	159736066	+	8.50535	NA	intron (NM_020840, intron 1 of 16)	intron (NM_020840, intron 1 of 16)	45794	NM_020840	57600	Hs.652441	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_61445	chr20	45186290	45186393	+	8.50535	NA	TTS (NM_022829)	TTS (NM_022829)	-7128	NM_080721	128506	Hs.526636	NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_48871	chr19	38734605	38734756	+	8.50535	NA	Intergenic	Intergenic	12551	NM_033256	94274	Hs.631569	NM_033256	HPRD:16291	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding
19-PTNLD28-TUMOR_peak_89940	chr6	150070638	150071074	+	8.50535	NA	promoter-TSS (NM_005389)	promoter-TSS (NM_005389)	25	NM_001252050	5110	Hs.279257	NM_005389	HPRD:08908	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_64746	chr22	24577068	24577301	+	8.50535	NA	promoter-TSS (NM_019601)	promoter-TSS (NM_019601)	-260	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_32092	chr14	101569723	101569953	+	8.50535	NA	Intergenic	Intergenic	33590	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_93375	chr7	74659553	74659768	+	8.50535	NA	intron (NR_002206, intron 1 of 23).2	LTR32|LTR|ERVL	-6201	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_50657	chr1_gl000192_random	161453	161705	+	8.50465	NA	intron (NR_103556, intron 37 of 45)	intron (NR_103556, intron 37 of 45)	245931	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_26140	chr12	108824165	108824260	+	8.50465	NA	Intergenic	MIRb|SINE|MIR	43254	NR_120483	102723562	Hs.455693	NR_120483		LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
19-PTNLD28-TUMOR_peak_86068	chr6	26003472	26003683	+	8.50465	NA	Intergenic	Intergenic	14463	NM_005325	3024	Hs.150206	NM_005325	HPRD:00820	HIST1H1A	H1.1|H1A|H1F1|HIST1	histone cluster 1, H1a	protein-coding
19-PTNLD28-TUMOR_peak_94086	chr7	97086551	97086669	+	8.50465	NA	Intergenic	Intergenic	-274661	NM_003182	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_73455	chr3	194942325	194942446	+	8.50465	NA	intron (NM_152531, intron 2 of 3)	intron (NM_152531, intron 2 of 3)	49510	NM_152531	152002	Hs.478741	NM_152531	HPRD:08757	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_39900	chr17	6397672	6397860	+	8.50465	NA	intron (NM_031220, intron 4 of 19)	intron (NM_031220, intron 4 of 19)	50031	NM_019013	54478	Hs.592116	NM_019013	HPRD:07649	FAM64A	CATS|RCS1	family with sequence similarity 64, member A	protein-coding
19-PTNLD28-TUMOR_peak_79186	chr5	18466080	18466445	+	8.50465	NA	Intergenic	Intergenic	-1078843	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_60532	chr20	31435606	31435708	+	8.50465	NA	intron (NM_012325, intron 6 of 6)	MamRep137|DNA|TcMar?	27958	NM_012325	22919	Hs.472437	NM_012325	HPRD:04379	MAPRE1	EB1	microtubule-associated protein, RP/EB family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_24935	chr12	63179706	63179832	+	8.50465	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	148896	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent, 1H	protein-coding
19-PTNLD28-TUMOR_peak_33256	chr15	41877635	41877883	+	8.50465	NA	Intergenic	CpG	26539	NM_006293	7301	Hs.381282	NM_006293	HPRD:02641	TYRO3	BYK|Dtk|RSE|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_85576	chr6	15089964	15090319	+	8.50465	NA	Intergenic	Intergenic	-156065	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_80346	chr5	66553438	66553598	+	8.50465	NA	Intergenic	Intergenic	-60901	NM_005582	4064	Hs.87205	NM_005582	HPRD:03749	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
19-PTNLD28-TUMOR_peak_35166	chr15	90379950	90380128	+	8.50465	NA	intron (NR_037582, intron 5 of 5)	intron (NR_037582, intron 5 of 5)	13914	NR_049817	100847059		NR_049817		MIR5094	-	microRNA 5094	ncRNA
19-PTNLD28-TUMOR_peak_18747	chr11	58949975	58950109	+	8.50465	NA	intron (NM_001300727, intron 2 of 8)	intron (NM_001300727, intron 2 of 8)	10230	NM_015177	23220	Hs.523696	NM_015177	ENSG00000110042	DTX4	RNF155	deltex 4, E3 ubiquitin ligase	protein-coding
19-PTNLD28-TUMOR_peak_39680	chr17	2117736	2117836	+	8.50465	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-18186	NR_110888	101927839	Hs.665648	NR_110888		LOC101927839	-	uncharacterized LOC101927839	ncRNA
19-PTNLD28-TUMOR_peak_77749	chr4	156129219	156129500	+	8.50465	NA	promoter-TSS (NM_000910)	promoter-TSS (NM_000910)	-422	NM_000910	4887	Hs.37125	NM_000910	HPRD:01216	NPY2R	NPY2-R	neuropeptide Y receptor Y2	protein-coding
19-PTNLD28-TUMOR_peak_57179	chr2	178190344	178190532	+	8.50465	NA	intron (NR_026966, intron 5 of 8)	intron (NR_026966, intron 5 of 8)	-11828	NR_106767	102465255		NR_106767		MIR6512	hsa-mir-6512	microRNA 6512	ncRNA
19-PTNLD28-TUMOR_peak_1213	chr1	19567865	19568077	+	8.50465	NA	intron (NM_001271429, intron 4 of 21)	MER102a|DNA|hAT-Charlie	10082	NM_001271429	23065	Hs.439200	NM_015047	HPRD:08306	EMC1	KIAA0090	ER membrane protein complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_57323	chr2	183387364	183387560	+	8.50465	NA	promoter-TSS (NM_005019)	promoter-TSS (NM_005019)	110	NM_001003683	5136	Hs.191046	NM_005019	HPRD:01387	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_10850	chr1	231856564	231856886	+	8.50465	NA	exon (NM_001164550, exon 4 of 5)	exon (NM_001164550, exon 4 of 5)	94164	NM_001164541	27185	Hs.13318	NM_018662	HPRD:05553	DISC1	C1orf136|SCZD9	disrupted in schizophrenia 1	protein-coding
19-PTNLD28-TUMOR_peak_795	chr1	11898805	11898994	+	8.50465	NA	intron (NR_046428, intron 22 of 22)	intron (NR_046428, intron 22 of 22)	-1477	NR_037806	100379251	Hs.710015	NR_037806		NPPA-AS1	NPPA-AS|NPPAAS	NPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3600	chr1	54326690	54326987	+	8.50465	NA	intron (NR_036639, intron 9 of 11)	intron (NR_036639, intron 9 of 11)	-22613	NR_033142	55706	Hs.476525	NM_018087	HPRD:08547	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
19-PTNLD28-TUMOR_peak_55727	chr2	131631416	131631521	+	8.50465	NA	Intergenic	Intergenic	-42756	NM_015320	50649	Hs.469935	NM_015320	HPRD:05559	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_108084	chrX	44510608	44510907	+	8.50465	NA	Intergenic	LTR33A|LTR|ERVL	-108536	NM_173794	139341	Hs.7549	NM_173794	HPRD:06658	FUNDC1	-	FUN14 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58115	chr2	209199100	209199290	+	8.50465	NA	intron (NM_015040, intron 24 of 41)	L2a|LINE|L2	-25374	NR_073601	5746	Hs.570296	NM_005048	HPRD:03276	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_46992	chr19	7849051	7849281	+	8.50465	NA	Intergenic	Intergenic	-3204	NR_002931	440508	Hs.568222	NR_002931		CLEC4GP1	-	C-type lectin domain family 4, member G pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40692	chr17	22256028	22256144	+	8.50021	NA	Intergenic	ALR/Alpha|Satellite|centr	233649	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_78691	chr5	1633924	1634436	+	8.49776	NA	promoter-TSS (NR_003713)	promoter-TSS (NR_003713)	-60	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66017	chr22	46943911	46944016	+	8.49776	NA	Intergenic	Intergenic	-10896	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_32799	chr15	30383377	30383546	+	8.49776	NA	intron (NM_001282472, intron 13 of 18)	intron (NM_001282472, intron 13 of 18)	8303	NM_001282472	653073	Hs.574257	NM_001282472		GOLGA8J	-	golgin A8 family, member J	protein-coding
19-PTNLD28-TUMOR_peak_38964	chr16	81349182	81349380	+	8.49566	NA	intron (NM_022041, intron 1 of 10)	CpG	710	NM_022041	8139	Hs.112569	NM_022041		GAN	GAN1|KLHL16	gigaxonin	protein-coding
19-PTNLD28-TUMOR_peak_76387	chr4	100867614	100867951	+	8.49566	NA	5' UTR (NM_001278310, exon 1 of 7)	5' UTR (NM_001278310, exon 1 of 7)	101	NM_001278311	79982	Hs.577426	NM_024920	HPRD:07013	DNAJB14	EGNR9427|PRO34683	DnaJ (Hsp40) homolog, subfamily B, member 14	protein-coding
19-PTNLD28-TUMOR_peak_50533	chr19	58362026	58362423	+	8.49566	NA	intron (NM_001204817, intron 1 of 2)	LTR14C|LTR|ERVK	1043	NM_032828	84914	Hs.642598	NM_032828	HPRD:15864	ZNF587	ZF6	zinc finger protein 587	protein-coding
19-PTNLD28-TUMOR_peak_103750	chr9	72876487	72876651	+	8.49525	NA	intron (NM_015110, intron 1 of 24)	L2|LINE|L2	2691	NM_015110	23137	Hs.534189	NM_015110	HPRD:10241	SMC5	SMC5L1	structural maintenance of chromosomes 5	protein-coding
19-PTNLD28-TUMOR_peak_72805	chr3	184334333	184334445	+	8.49426	NA	Intergenic	L2b|LINE|L2	54802	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_68812	chr3	65494975	65495234	+	8.49426	NA	intron (NM_001033057, intron 2 of 22)	L1HS|LINE|L1	-384387	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29413	chr14	22238929	22239070	+	8.49426	NA	Intergenic	MIRb|SINE|MIR	105702	NM_001001912	26686	Hs.547982	NM_001001912	HPRD:11414	OR4E2	OR14-42	olfactory receptor, family 4, subfamily E, member 2	protein-coding
19-PTNLD28-TUMOR_peak_12319	chr10	21644772	21644907	+	8.49426	NA	Intergenic	Intergenic	140731	NR_031736	100302129		NR_031736		MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
19-PTNLD28-TUMOR_peak_43648	chr17	75361895	75362099	+	8.49426	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-7275	NM_001113493	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_80584	chr5	71748190	71748291	+	8.49426	NA	intron (NM_152625, intron 3 of 4)	intron (NM_152625, intron 3 of 4)	55009	NM_152625	167465	Hs.370303	NM_152625	HPRD:18329	ZNF366	DCSCRIPT	zinc finger protein 366	protein-coding
19-PTNLD28-TUMOR_peak_23352	chr12	20918474	20918664	+	8.49426	NA	Intergenic	HERVH-int|LTR|ERV1	-45069	NM_019844	28234	Hs.504966	NM_019844	HPRD:12021	SLCO1B3	HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8	solute carrier organic anion transporter family, member 1B3	protein-coding
19-PTNLD28-TUMOR_peak_109358	chrX	122866888	122867033	+	8.49426	NA	promoter-TSS (NM_001081550)	promoter-TSS (NM_001081550)	-56	NM_001081550	57187	Hs.149991	NM_020449	HPRD:02317	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
19-PTNLD28-TUMOR_peak_9361	chr1	202654005	202654122	+	8.49426	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	25488	NM_177402	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_25809	chr12	101262434	101262594	+	8.49426	NA	intron (NM_001286615, intron 1 of 27)	intron (NM_001286615, intron 1 of 27)	-32910	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_26593	chr12	119594320	119594459	+	8.49426	NA	exon (NM_194286, exon 13 of 13)	exon (NM_194286, exon 13 of 13)	-22206	NM_014365	26353	Hs.400095	NM_014365	HPRD:06420	HSPB8	CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22	heat shock 22kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_26011	chr12	106381258	106381425	+	8.49426	NA	Intergenic	Intergenic	152470	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_32341	chr14	105689707	105689806	+	8.49426	NA	intron (NM_001242788, intron 9 of 16)	L1ME1|LINE|L1	24466	NM_145685	2972	Hs.424484	NM_001519	HPRD:05361	BRF1	BRF|BRF-1|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_82627	chr5	139731454	139731551	+	8.49426	NA	Intergenic	MER20B|DNA|hAT-Charlie	-5314	NM_001945	1839	Hs.799	NM_001945	HPRD:00526	HBEGF	DTR|DTS|DTSF|HEGFL	heparin-binding EGF-like growth factor	protein-coding
19-PTNLD28-TUMOR_peak_50142	chr19	53134708	53134929	+	8.49426	NA	intron (NM_001277949, intron 3 of 4)	HERVH-int|LTR|ERV1	6826	NM_001105550	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_65261	chr22	35653425	35653534	+	8.49426	NA	promoter-TSS (NR_027780)	promoter-TSS (NR_027780)	34	NM_001003681	10042	Hs.588815	NM_005487	HPRD:05267	HMGXB4	HMG2L1|HMGBCG|THC211630	HMG box domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_99119	chr8	70246592	70246722	+	8.49426	NA	Intergenic	Intergenic	113822	NR_110433	100505739	Hs.127115	NR_110433		LOC100505739	-	uncharacterized LOC100505739	ncRNA
19-PTNLD28-TUMOR_peak_3932	chr1	61618474	61618692	+	8.49426	NA	intron (NM_001145511, intron 2 of 10)	L2c|LINE|L2	70603	NM_001134673	4774	Hs.740757	NM_005595	HPRD:09007	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
19-PTNLD28-TUMOR_peak_91351	chr7	16119962	16120088	+	8.49426	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-130086	NR_038946	100506025	Hs.649029	NR_038946	ENSG00000229688	ISPD-AS1	-	ISPD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54375	chr2	98316768	98316856	+	8.49426	NA	intron (NR_038386, intron 8 of 9)	intron (NR_038386, intron 8 of 9)	-13219	NM_001079	7535	Hs.234569	NM_001079	HPRD:01495	ZAP70	SRK|STCD|STD|TZK|ZAP-70	zeta-chain (TCR) associated protein kinase 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_63219	chr21	34419710	34419834	+	8.49426	NA	Intergenic	Intergenic	-10363	NR_104056	101930746	Hs.580934	NR_104056		LINC00945	-	long intergenic non-protein coding RNA 945	ncRNA
19-PTNLD28-TUMOR_peak_16568	chr11	1404123	1404709	+	8.49426	NA	Intergenic	CpG	-6713	NM_003957	9024	Hs.170819	NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_59402	chr20	709133	709302	+	8.49426	NA	Intergenic	CpG	40011	NM_033409	113278	Hs.283865	NM_033409	HPRD:09843	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 (riboflavin transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_104320	chr9	89561194	89561325	+	8.49306	NA	exon (NM_002048, exon 1 of 1)	exon (NM_002048, exon 1 of 1)	845	NM_002048	2619	Hs.65029	NM_002048	HPRD:00747	GAS1	-	growth arrest-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_19173	chr11	64510332	64510620	+	8.49306	NA	intron (NM_153819, intron 1 of 16)	CpG-4298	1154	NM_001098671	10235	Hs.99491	NM_005825	HPRD:09278	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_90838	chr7	1546639	1546956	+	8.49306	NA	Intergenic	Intergenic	-2779	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_51562	chr2	24298967	24299073	+	8.49227	NA	promoter-TSS (NM_001291328)	promoter-TSS (NM_001291328)	294	NM_016047	51639	Hs.177861	NM_016047	HPRD:09702	SF3B6	HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a	splicing factor 3b, subunit 6, 14kDa	protein-coding
19-PTNLD28-TUMOR_peak_106130	chr9	129556462	129556574	+	8.49181	NA	Intergenic	Intergenic	-10767	NM_014007	23099	Hs.355581	NM_014007	HPRD:08346	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19-PTNLD28-TUMOR_peak_93045	chr7	69240284	69240468	+	8.49181	NA	intron (NM_001127231, intron 1 of 17)	intron (NM_001127231, intron 1 of 17)	176471	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_75367	chr4	55896835	55897120	+	8.49181	NA	Intergenic	Intergenic	94785	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_9179	chr1	201160894	201161031	+	8.49181	NA	intron (NM_001164586, intron 1 of 23)	intron (NM_001164586, intron 1 of 23)	1009	NM_001164586	91156	Hs.519024	NM_178275	HPRD:16812	IGFN1	EEF1A2BP1	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_60719	chr20	34051679	34051811	+	8.49181	NA	intron (NM_007186, intron 5 of 34)	intron (NM_007186, intron 5 of 34)	8522	NM_007186	11190	Hs.443976	NM_007186	HPRD:09877	CEP250	C-NAP1|CEP2|CNAP1	centrosomal protein 250kDa	protein-coding
19-PTNLD28-TUMOR_peak_105457	chr9	114837090	114837254	+	8.49181	NA	intron (NM_001282640, intron 12 of 17)	intron (NM_001282640, intron 12 of 17)	100405	NM_022486	64420	Hs.494827	NM_022486	HPRD:15452	SUSD1	-	sushi domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_11347	chr1	243431373	243431550	+	8.49181	NA	intron (NM_006642, intron 1 of 17)	intron (NM_006642, intron 1 of 17)	12154	NM_006642	10806	Hs.591530	NM_006642	HPRD:10215	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding
19-PTNLD28-TUMOR_peak_8158	chr1	171391759	171391948	+	8.49181	NA	Intergenic	LTR39|LTR|ERV1	-62813	NM_015172	23215	Hs.494614	NM_015172	HPRD:16539	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
19-PTNLD28-TUMOR_peak_61071	chr20	39140315	39140429	+	8.49181	NA	Intergenic	Intergenic	177508	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_40005	chr17	7620256	7620463	+	8.49181	NA	Intergenic	Intergenic	-2680	NM_020877	146754	Hs.367649	NM_020877	HPRD:17214	DNAH2	DNAHC2|DNHD3	dynein, axonemal, heavy chain 2	protein-coding
19-PTNLD28-TUMOR_peak_62223	chr20	55532876	55533034	+	8.49040	NA	Intergenic	Intergenic	-255797	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25282	chr12	71697141	71697323	+	8.49040	NA	Intergenic	Intergenic	-136318	NM_003667	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_60899	chr20	36306774	36307153	+	8.49040	NA	non-coding (NR_040021, exon 2 of 4)	non-coding (NR_040021, exon 2 of 4)	1651	NR_040021	100287792	Hs.517026	NM_001001690	ENSG00000204117	LOC100287792	-	uncharacterized LOC100287792	ncRNA
19-PTNLD28-TUMOR_peak_76364	chr4	99977207	99977382	+	8.49040	NA	intron (NM_015143, intron 9 of 10)	intron (NM_015143, intron 9 of 10)	32645	NM_000671	128	Hs.78989	NM_000671	HPRD:00064	ADH5	ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_11699	chr10	3335992	3336102	+	8.49040	NA	Intergenic	Intergenic	-121014	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_47635	chr19	14511788	14512046	+	8.49040	NA	intron (NM_001025160, intron 8 of 18)	AluJb|SINE|Alu	18278	NM_005804	10212	Hs.311609	NM_005804	HPRD:10861	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	protein-coding
19-PTNLD28-TUMOR_peak_9347	chr1	202538126	202538228	+	8.49040	NA	intron (NM_001197131, intron 5 of 6)	intron (NM_001197131, intron 5 of 6)	28935	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_21573	chr11	119210786	119211134	+	8.49040	NA	exon (NM_015645, exon 14 of 15)	exon (NM_015645, exon 14 of 15)	633	NM_001278431	114902	Hs.632102	NM_015645	HPRD:10575	C1QTNF5	CTRP5	C1q and tumor necrosis factor related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_101600	chr8	144313795	144313909	+	8.49040	NA	Intergenic	L1MD1|LINE|L1	-15139	NM_001271156	286128	Hs.668016	NM_173832	HPRD:08244	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_106237	chr9	130860549	130860823	+	8.49014	NA	promoter-TSS (NM_052901)	promoter-TSS (NM_052901)	-75	NM_052901	114789	Hs.5476	NM_052901	HPRD:10573	SLC25A25	MCSC|PCSCL|SCAMC-2	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	protein-coding
19-PTNLD28-TUMOR_peak_83159	chr5	149380675	149380825	+	8.49014	NA	promoter-TSS (NM_030953)	promoter-TSS (NM_030953)	-20	NM_030953	81789	Hs.169333	NM_030953	HPRD:18190	TIGD6	-	tigger transposable element derived 6	protein-coding
19-PTNLD28-TUMOR_peak_21525	chr11	118782651	118782783	+	8.48975	NA	Intergenic	Intergenic	-1104	NM_182557	283149	Hs.414740	NM_182557		BCL9L	BCL9-2|DLNB11	B-cell CLL/lymphoma 9-like	protein-coding
19-PTNLD28-TUMOR_peak_66095	chr22	50628662	50629018	+	8.48734	NA	intron (NM_025204, intron 1 of 9)	intron (NM_025204, intron 1 of 9)	4480	NM_025204	80305	Hs.517731	NM_025204	HPRD:11450	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
19-PTNLD28-TUMOR_peak_40064	chr17	8066199	8066317	+	8.48734	NA	promoter-TSS (NM_014232)	promoter-TSS (NM_014232)	35	NM_014232	6844	Hs.25348	NM_014232	HPRD:01717	VAMP2	SYB2|VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	protein-coding
19-PTNLD28-TUMOR_peak_32175	chr14	103571194	103571514	+	8.48734	NA	exon (NM_001077594, exon 6 of 11)	exon (NM_001077594, exon 6 of 11)	4873	NM_001077594	91828	Hs.37712	NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3-like 4	protein-coding
19-PTNLD28-TUMOR_peak_29254	chr14	19515243	19515567	+	8.48734	NA	Intergenic	L1PB1|LINE|L1	-37960	NR_027480	404785	Hs.711826	NM_207513	HPRD:12331	POTEG	A26C2|ACTBL1|CT104.4|POTE-14|POTE14|POTE14alpha|POTE22	POTE ankyrin domain family, member G	protein-coding
19-PTNLD28-TUMOR_peak_1095	chr1	16861157	16861399	+	8.48734	NA	Intergenic	CpG	-14131	NR_037446	100500876		NR_037446	miRBase:MI0016076	MIR3675	-	microRNA 3675	ncRNA
19-PTNLD28-TUMOR_peak_42258	chr17	48628323	48628442	+	8.48676	NA	exon (NM_001258373, exon 12 of 17)	exon (NM_001258373, exon 12 of 17)	3932	NM_001258372	64847	Hs.103147	NM_022827	HPRD:07961	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
19-PTNLD28-TUMOR_peak_11050	chr1	235093272	235093363	+	8.48676	NA	Intergenic	Intergenic	197935	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_79918	chr5	54528774	54529069	+	8.48676	NA	promoter-TSS (NR_125348)	promoter-TSS (NR_125348)	-102	NR_125348	10309	Hs.3041	NM_021147	HPRD:06375	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
19-PTNLD28-TUMOR_peak_64124	chr21	47714675	47714839	+	8.48676	NA	intron (NM_058181, intron 3 of 4)	intron (NM_058181, intron 3 of 4)	8490	NM_001006114	54059	Hs.474066	NM_058181	HPRD:10754	YBEY	C21orf57	ybeY metallopeptidase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_53961	chr2	87903900	87904031	+	8.48622	NA	Intergenic	Intergenic	-25309	NR_039634	100616499		NR_039634	miRBase:MI0016775	MIR4435-1	-	microRNA 4435-1	ncRNA
19-PTNLD28-TUMOR_peak_13540	chr10	50374061	50374295	+	8.48622	NA	intron (NM_001010863, intron 3 of 5)	intron (NM_001010863, intron 3 of 5)	22267	NM_001288743	170371	Hs.385493	NM_001010863		C10orf128	-	chromosome 10 open reading frame 128	protein-coding
19-PTNLD28-TUMOR_peak_17429	chr11	16904760	16904985	+	8.48622	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	131091	NM_175058	144100	Hs.12332	NM_175058	HPRD:15142	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
19-PTNLD28-TUMOR_peak_82712	chr5	140792946	140793044	+	8.48622	NA	exon (NM_018913, exon 1 of 4)	exon (NM_018913, exon 1 of 4)	252	NM_018913	56106	Hs.368160	NM_018913	HPRD:09387	PCDHGA10	PCDH-GAMMA-A10	protocadherin gamma subfamily A, 10	protein-coding
19-PTNLD28-TUMOR_peak_5675	chr1	114519634	114519747	+	8.48622	NA	3' UTR (NM_181358, exon 14 of 14)	3' UTR (NM_181358, exon 14 of 14)	-2323	NM_001286352	56944	Hs.9315	NM_020190	HPRD:14878	OLFML3	HNOEL-iso|OLF44	olfactomedin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_46783	chr19	4338746	4338915	+	8.48156	NA	promoter-TSS (NM_017720)	promoter-TSS (NM_017720)	17	NM_001013841	55620	Hs.194385	NM_017720	HPRD:07430	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
19-PTNLD28-TUMOR_peak_32430	chr14	107285852	107286003	+	8.47657	NA	Intergenic	HERV1_LTRa|LTR|ERV1	347482	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_2620	chr1	39568351	39568441	+	8.47636	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	18557	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_95148	chr7	128470456	128470703	+	8.47616	NA	promoter-TSS (NM_001458)	promoter-TSS (NM_001458)	96	NM_001127487	2318	Hs.58414	NM_001458	HPRD:00018	FLNC	ABP-280|ABP280A|ABPA|ABPL|FLN2|MFM5|MPD4	filamin C, gamma	protein-coding
19-PTNLD28-TUMOR_peak_91210	chr7	6897402	6897560	+	8.47519	NA	Intergenic	Intergenic	-31555	NM_198097	221960	Hs.567779	NM_198097	HPRD:12916	CCZ1B	C7orf28B|H_NH0577018.2	CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_84324	chr5	176928089	176928183	+	8.47343	NA	TTS (NM_001144876)	TTS (NM_001144876)	-3530	NR_103804	9260	Hs.533040	NM_005451	HPRD:10436	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7 (enigma)	protein-coding
19-PTNLD28-TUMOR_peak_109807	chrX	151150793	151151030	+	8.47230	NA	Intergenic	Intergenic	-7760	NM_004961	2564	Hs.22785	NM_004961	HPRD:02104	GABRE	-	gamma-aminobutyric acid (GABA) A receptor, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_1106	chr1	16947579	16947781	+	8.47230	NA	intron (NR_026752, intron 5 of 6)	intron (NR_026752, intron 5 of 6)	-7580	NM_017940	55672	Hs.467587	NM_017940	HPRD:07946	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	neuroblastoma breakpoint family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_82637	chr5	139944970	139945104	+	8.47230	NA	promoter-TSS (NM_133172)	promoter-TSS (NM_133172)	617	NM_080670	113829	Hs.406840	NM_080670	HPRD:11574	SLC35A4	-	solute carrier family 35, member A4	protein-coding
19-PTNLD28-TUMOR_peak_51816	chr2	28613798	28613991	+	8.47005	NA	intron (NR_103831, intron 1 of 1)	CpG	-1885	NM_005253	2355	Hs.220971	NM_005253		FOSL2	FRA2	FOS-like antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_47647	chr19	14605825	14606060	+	8.46465	NA	intron (NM_005716, intron 1 of 8)	intron (NM_005716, intron 1 of 8)	1019	NM_005716	10755	Hs.655012	NM_005716	HPRD:05462	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_19281	chr11	65275516	65275721	+	8.46428	NA	Intergenic	AluSp|SINE|Alu	-7190	NR_049839	100847035		NR_049839		MIR548AR	-	microRNA 548ar	ncRNA
19-PTNLD28-TUMOR_peak_92570	chr7	51384648	51384862	+	8.46186	NA	promoter-TSS (NM_001287438)	promoter-TSS (NM_001287438)	-240	NM_001287436	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_105269	chr9	111434873	111435164	+	8.46186	NA	Intergenic	Intergenic	183257	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_101442	chr8	142125288	142125386	+	8.46186	NA	Intergenic	Intergenic	-13383	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_11818	chr10	5636746	5636945	+	8.46128	NA	Intergenic	Intergenic	-68636	NR_120497	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26851	chr12	122984800	122984896	+	8.46128	NA	intron (NM_017612, intron 1 of 13)	intron (NM_017612, intron 1 of 13)	772	NM_017612	55596	Hs.37706	NM_017612		ZCCHC8	-	zinc finger, CCHC domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_107984	chrX	39964076	39964202	+	8.46050	NA	intron (NM_001123384, intron 1 of 13)	CpG-27857	-7420	NM_001123385	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_42322	chr17	49338207	49338376	+	8.46050	NA	promoter-TSS (NM_017643)	promoter-TSS (NM_017643)	394	NM_016001	51096	Hs.709327	NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit (SSU) processome component homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_24957	chr12	64309377	64309489	+	8.45525	NA	intron (NM_020762, intron 1 of 21)	intron (NM_020762, intron 1 of 21)	70892	NM_020762	57522	Hs.210751	NM_020762	HPRD:09406	SRGAP1	ARHGAP13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_6507	chr1	147775543	147775720	+	8.45525	NA	intron (NR_102404, intron 17 of 18).2	intron (NR_102404, intron 17 of 18).2	31047	NR_049810	100847044		NR_049810		MIR5087	-	microRNA 5087	ncRNA
19-PTNLD28-TUMOR_peak_45585	chr18	45663469	45663609	+	8.45525	NA	5' UTR (NM_001039360, exon 1 of 3)	5' UTR (NM_001039360, exon 1 of 3)	141	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_37157	chr16	29787218	29787329	+	8.45464	NA	Intergenic	Intergenic	-2288	NM_152338	653808	Hs.632195	NM_152338	ENSG00000174992	ZG16	JCLN|JCLN1|ZG16A	zymogen granule protein 16	protein-coding
19-PTNLD28-TUMOR_peak_37127	chr16	29447812	29447926	+	8.45464	NA	Intergenic	Intergenic	-12797	NR_002454	606724	Hs.744975	NR_002454		LOC606724	-	coronin, actin binding protein, 1A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_20302	chr11	79123944	79124073	+	8.45464	NA	intron (NM_001098816, intron 1 of 33)	intron (NM_001098816, intron 1 of 33)	9262	NR_049841	100847000		NR_049841	miRBase:MI0019133	MIR5579	-	microRNA 5579	ncRNA
19-PTNLD28-TUMOR_peak_55340	chr2	121118156	121118351	+	8.45464	NA	Intergenic	MIRb|SINE|MIR	14534	NM_002193	3625	Hs.1735	NM_002193	HPRD:00934	INHBB	-	inhibin, beta B	protein-coding
19-PTNLD28-TUMOR_peak_36579	chr16	18515377	18515526	+	8.45464	NA	intron (NM_001004060, intron 29 of 31)	intron (NM_001004060, intron 29 of 31)	-9617	NR_036145	100423006		NR_036145	miRBase:MI0014221	MIR3179-3	-	microRNA 3179-3	ncRNA
19-PTNLD28-TUMOR_peak_43919	chr17	78933574	78933739	+	8.45464	NA	intron (NM_020761, intron 29 of 33)	intron (NM_020761, intron 29 of 33)	-31985	NM_024591	79643	Hs.514560	NM_024591	HPRD:08564	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
19-PTNLD28-TUMOR_peak_7351	chr1	156676188	156676359	+	8.45458	NA	promoter-TSS (NM_001878)	promoter-TSS (NM_001878)	-665	NM_001199723	1382	Hs.405662	NM_001878	HPRD:08353	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_93153	chr7	72663754	72663934	+	8.45401	NA	Intergenic	Intergenic	29170	NR_003186	654816	Hs.655201	NR_003186	ENSG00000182487	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B pseudogene	pseudo
19-PTNLD28-TUMOR_peak_3382	chr1	48849243	48849402	+	8.45401	NA	intron (NM_019073, intron 9 of 12)	SVA_E|Other|Other	88558	NM_001286238	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_66028	chr22	47146883	47147106	+	8.45401	NA	Intergenic	Intergenic	-11520	NM_001284303	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_32315	chr14	105446628	105446741	+	8.45401	NA	Intergenic	Intergenic	-1990	NM_138420	113146	Hs.441783	NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
19-PTNLD28-TUMOR_peak_15927	chr10	120863612	120863866	+	8.45401	NA	intron (NR_027141, intron 1 of 8)	CpG	110	NR_027141	55855	Hs.567120	NM_018472		FAM45B	HT011	family with sequence similarity 45, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95353	chr7	130970410	130970526	+	8.45401	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	42070	NR_125364	100506881	Hs.660830	NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_36065	chr16	5128515	5128616	+	8.45401	NA	intron (NM_019109, intron 6 of 12)	L2b|LINE|L2	6755	NM_019109	56052	Hs.592086	NM_019109		ALG1	CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_24800	chr12	58148622	58148743	+	8.45329	NA	promoter-TSS (NM_138396)	promoter-TSS (NM_138396)	-199	NM_138396	92979	Hs.632709	NM_138396	HPRD:14360	MARCH9	MARCH-IX|RNF179	membrane-associated ring finger (C3HC4) 9	protein-coding
19-PTNLD28-TUMOR_peak_36295	chr16	11453382	11453577	+	8.45234	NA	Intergenic	Intergenic	14168	NM_152308	116028	Hs.347524	NM_152308	HPRD:14497	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19-PTNLD28-TUMOR_peak_42964	chr17	63452932	63453108	+	8.45234	NA	Intergenic	Intergenic	104720	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_57396	chr2	188855043	188855163	+	8.45208	NA	Intergenic	Intergenic	-301293	NM_001252669	51454	Hs.470887	NM_016315		GULP1	CED-6|CED6|GULP	GULP, engulfment adaptor PTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_68263	chr3	51016493	51016594	+	8.45208	NA	intron (NM_004947, intron 5 of 52)	L1PA3|LINE|L1	303871	NM_004947	1795	Hs.476284	NM_004947	HPRD:10341	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
19-PTNLD28-TUMOR_peak_71973	chr3	157344696	157344854	+	8.45208	NA	Intergenic	Intergenic	83642	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_85781	chr6	19330792	19330926	+	8.45208	NA	Intergenic	Intergenic	-150148	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
19-PTNLD28-TUMOR_peak_66976	chr3	16651582	16651915	+	8.45208	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-4742	NM_001351	1618	Hs.131179	NM_001351	HPRD:09029	DAZL	DAZH|DAZL1|DAZLA|SPGYLA	deleted in azoospermia-like	protein-coding
19-PTNLD28-TUMOR_peak_1750	chr1	27519285	27519470	+	8.45208	NA	Intergenic	Intergenic	-37756	NM_003047	6548	Hs.91389	NM_003047	HPRD:00123	SLC9A1	APNH|NHE-1|NHE1|PPP1R143	solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_21236	chr11	113258656	113258814	+	8.45208	NA	exon (NM_178510, exon 1 of 8)	exon (NM_178510, exon 1 of 8)	222	NM_178510	255239	Hs.448473	NM_178510	HPRD:10580	ANKK1	PKK2	ankyrin repeat and kinase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4833	chr1	91557455	91557668	+	8.45208	NA	Intergenic	MER77B|LTR|ERVL	-69749	NM_032186	84146	Hs.173001	NM_016620	HPRD:15885	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
19-PTNLD28-TUMOR_peak_46862	chr19	5773784	5774030	+	8.45208	NA	intron (NM_152784, intron 20 of 21)	intron (NM_152784, intron 20 of 21)	10869	NM_001134316	163154	Hs.631838	NM_153359	HPRD:14501	PRR22	-	proline rich 22	protein-coding
19-PTNLD28-TUMOR_peak_48264	chr19	22806005	22806130	+	8.45208	NA	Intergenic	CpG	-11059	NM_020855	57615	Hs.232108	NM_020855	ENSG00000229676	ZNF492	ZNF115	zinc finger protein 492	protein-coding
19-PTNLD28-TUMOR_peak_102552	chr9	27333308	27333518	+	8.45208	NA	intron (NM_024761, intron 3 of 3)	intron (NM_024761, intron 3 of 3)	-36276	NM_001161585	54586	Hs.163070	NM_020641	HPRD:12932	EQTN	AFAF|C9orf11|SPACA8|equatorin	equatorin, sperm acrosome associated	protein-coding
19-PTNLD28-TUMOR_peak_2528	chr1	38148058	38148247	+	8.45208	NA	3' UTR (NM_017850, exon 5 of 5)	3' UTR (NM_017850, exon 5 of 5)	8040	NM_017850	54955	Hs.272673	NM_017850	HPRD:07918	C1orf109	-	chromosome 1 open reading frame 109	protein-coding
19-PTNLD28-TUMOR_peak_73128	chr3	189208271	189208427	+	8.45208	NA	Intergenic	Intergenic	-140867	NM_001114978	8626	Hs.137569	NM_003722	HPRD:04469	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
19-PTNLD28-TUMOR_peak_19046	chr11	62673559	62673729	+	8.45208	NA	Intergenic	Intergenic	15368	NM_000738	1128	Hs.632119	NM_000738	HPRD:00338	CHRM1	HM1|M1|M1R	cholinergic receptor, muscarinic 1	protein-coding
19-PTNLD28-TUMOR_peak_16939	chr11	8033811	8033910	+	8.45208	NA	intron (NR_125366, intron 2 of 2)	MER77|LTR|ERVL	4196	NR_125366	103581031	Hs.249366	NR_125366		CASC23	LINC01464	cancer susceptibility candidate 23 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_14252	chr10	73687848	73688061	+	8.45208	NA	Intergenic	Intergenic	-36166	NM_004273	9469	Hs.158304	NM_004273	HPRD:07052	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_27167	chr12	130528694	130528829	+	8.45208	NA	Intergenic	Intergenic	-1874	NR_024457	100190940	Hs.625993	NR_024457	ENSG00000214039	LOC100190940	-	uncharacterized LOC100190940	ncRNA
19-PTNLD28-TUMOR_peak_109660	chrX	141566016	141566213	+	8.45208	NA	Intergenic	L1HS|LINE|L1	-273038	NM_016249	51438	Hs.123536	NM_016249	HPRD:06632	MAGEC2	CT10|HCA587|MAGEE1	melanoma antigen family C, 2	protein-coding
19-PTNLD28-TUMOR_peak_38504	chr16	69775975	69776068	+	8.45208	NA	non-coding (NR_074074, exon 8 of 8)	non-coding (NR_074074, exon 8 of 8)	12850	NR_074074	28987	Hs.271695	NM_014062	HPRD:11395	NOB1	ART-4|MST158|NOB1P|PSMD8BP1	NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_79948	chr5	55393598	55393696	+	8.45208	NA	Intergenic	AluY|SINE|Alu	102652	NR_102755	441072	Hs.482141	NR_102755	ENSG00000227908	FLJ31104	-	uncharacterized LOC441072	ncRNA
19-PTNLD28-TUMOR_peak_50063	chr19	51819340	51819633	+	8.45208	NA	intron (NM_001101372, intron 1 of 7)	AluJb|SINE|Alu	4384	NM_001101372	402665	Hs.546636	NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
19-PTNLD28-TUMOR_peak_78935	chr5	11320107	11320274	+	8.45208	NA	intron (NM_001288717, intron 8 of 20)	intron (NM_001288717, intron 8 of 20)	268839	NM_001288715	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_51685	chr2	26905160	26905285	+	8.45208	NA	Intergenic	Intergenic	-10359	NM_002246	3777	Hs.645288	NM_002246		KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium channel, subfamily K, member 3	protein-coding
19-PTNLD28-TUMOR_peak_91189	chr7	6670003	6670182	+	8.45208	NA	Intergenic	MER31B|LTR|ERV1	-6861	NM_001278559	100131017	Hs.112668	NM_001278559		ZNF316	ENST00000305834|MZF-3	zinc finger protein 316	protein-coding
19-PTNLD28-TUMOR_peak_109302	chrX	118832901	118833096	+	8.45208	NA	Intergenic	L2c|LINE|L2	-5665	NM_015129	23157	Hs.496666	NM_015129	HPRD:06716	SEPT6	SEP2|SEPT2	septin 6	protein-coding
19-PTNLD28-TUMOR_peak_30805	chr14	65255526	65255690	+	8.45208	NA	intron (NM_001024858, intron 14 of 34)	L3|LINE|CR1	-3204	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_8804	chr1	184006647	184006852	+	8.45208	NA	5' UTR (NM_015101, exon 1 of 12)	5' UTR (NM_015101, exon 1 of 12)	114	NM_015101	23127	Hs.387995	NM_015101	HPRD:13583	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_98335	chr8	39956614	39956857	+	8.45208	NA	Intergenic	Intergenic	-54252	NM_020130	56892	Hs.591849	NM_020130	HPRD:09650	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding
19-PTNLD28-TUMOR_peak_101963	chr9	2241966	2242289	+	8.45208	NA	Intergenic	Intergenic	83671	NM_001289400	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_47529	chr19	13552809	13552919	+	8.45208	NA	intron (NM_001174080, intron 3 of 46)	intron (NM_001174080, intron 3 of 46)	64410	NM_001127222	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_69207	chr3	80946767	80946858	+	8.45208	NA	Intergenic	L1PA2|LINE|L1	864138	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_27799	chr13	34392710	34392880	+	8.45208	NA	intron (NM_002915, intron 1 of 8)	L2a|LINE|L2	589	NM_181558	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_92463	chr7	47765137	47765235	+	8.45208	NA	Intergenic	Intergenic	-35888	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
19-PTNLD28-TUMOR_peak_58075	chr2	208338007	208338121	+	8.45208	NA	Intergenic	Intergenic	-56552	NM_134442	1385	Hs.516646	NM_004379	HPRD:00442	CREB1	CREB	cAMP responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59847	chr20	12324440	12324534	+	8.45208	NA	Intergenic	HERVH-int|LTR|ERV1	425974	NM_014962	22903	Hs.709366	NM_014962	HPRD:12538	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_79238	chr5	23466539	23466804	+	8.45208	NA	Intergenic	LTR8A|LTR|ERV1	-41053	NM_020227	56979	Hs.283096	NM_020227	HPRD:17905	PRDM9	MEISETZ|MSBP3|PFM6|PRMD9|ZNF899	PR domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_90610	chr6	169060243	169060769	+	8.45208	NA	intron (NM_022138, intron 11 of 12)	(TTGGGG)n|Simple_repeat|Simple_repeat	218675	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_75419	chr4	57239065	57239203	+	8.45208	NA	intron (NM_001286670, intron 3 of 11)	MER39|LTR|ERV1	14540	NM_001286669	132949	Hs.104347	NM_181806	HPRD:12398	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_78465	chr4	189142368	189142502	+	8.45208	NA	Intergenic	L1ME3C|LINE|L1	81837	NM_178556	339976	Hs.348618	NM_178556	HPRD:08774	TRIML1	RNF209	tripartite motif family-like 1	protein-coding
19-PTNLD28-TUMOR_peak_25487	chr12	85306586	85306722	+	8.45208	NA	promoter-TSS (NM_182767)	promoter-TSS (NM_182767)	-46	NM_001146335	55117	Hs.44424	NM_018057	HPRD:12141	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 (neutral amino acid transporter), member 15	protein-coding
19-PTNLD28-TUMOR_peak_51113	chr2	11029903	11030143	+	8.45208	NA	Intergenic	Intergenic	11630	NR_110575	101929733	Hs.736697	NR_110575	ENSG00000271952	LOC101929733	-	uncharacterized LOC101929733	ncRNA
19-PTNLD28-TUMOR_peak_53011	chr2	62705469	62705598	+	8.45208	NA	Intergenic	Intergenic	28071	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_72637	chr3	181745280	181745420	+	8.45208	NA	Intergenic	Intergenic	75198	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_92622	chr7	55119953	55120050	+	8.44934	NA	intron (NM_201284, intron 1 of 15)	intron (NM_201284, intron 1 of 15)	33276	NM_005228	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_27637	chr13	30163486	30163640	+	8.44934	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	6262	NM_003045	6541	Hs.14846	NM_003045	HPRD:00091	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding
19-PTNLD28-TUMOR_peak_55672	chr2	130750137	130750537	+	8.44934	NA	Intergenic	CpG	-12292	NR_036537	100131320	Hs.535586	NR_036537	ENSG00000225449	RAB6C-AS1	-	RAB6C antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16776	chr11	3844657	3844795	+	8.44934	NA	intron (NR_104271, intron 4 of 7)	intron (NR_104271, intron 4 of 7)	14960	NM_014489	27315	Hs.133968	NM_014489	HPRD:17016	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
19-PTNLD28-TUMOR_peak_46507	chr19	719190	719373	+	8.44934	NA	intron (NM_001040134, intron 1 of 7)	CpG	10328	NM_002579	5064	Hs.631841	NM_002579	HPRD:09734	PALM	-	paralemmin	protein-coding
19-PTNLD28-TUMOR_peak_42163	chr17	47929246	47929423	+	8.44934	NA	Intergenic	CpG	-3955	NM_001077504	255061	Hs.652130	NM_170685	HPRD:09701	TAC4	EK|HK-1|HK1|PPT-C	tachykinin 4 (hemokinin)	protein-coding
19-PTNLD28-TUMOR_peak_75900	chr4	80010579	80010732	+	8.44934	NA	intron (NR_038342, intron 3 of 5)	intron (NR_038342, intron 3 of 5)	117753	NR_038342	100505875	Hs.480055	NR_038342		LINC01088	-	long intergenic non-protein coding RNA 1088	ncRNA
19-PTNLD28-TUMOR_peak_101940	chr9	1232085	1232227	+	8.44934	NA	Intergenic	Intergenic	181536	NM_181872	10655	Hs.59506	NM_006557	HPRD:16079	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_7748	chr1	162115336	162115486	+	8.44934	NA	intron (NM_001164757, intron 1 of 9)	intron (NM_001164757, intron 1 of 9)	-11486	NR_039798	100616386		NR_039798		MIR4654	-	microRNA 4654	ncRNA
19-PTNLD28-TUMOR_peak_65836	chr22	44279016	44279203	+	8.44934	NA	intron (NM_138814, intron 7 of 8)	L2b|LINE|L2	8784	NM_138814	150379	Hs.248086	NM_138814	HPRD:17870	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin-like phospholipase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_83860	chr5	170031113	170031282	+	8.44934	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	100157	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38954	chr16	81250379	81250591	+	8.44934	NA	intron (NM_001076780, intron 1 of 17)	AluSx3|SINE|Alu	3490	NM_001076780	114780	Hs.413525	NM_052892	HPRD:06990	PKD1L2	PC1L2	polycystic kidney disease 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_89012	chr6	108909888	108909997	+	8.44934	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	27873	NM_001455	2309	Hs.220950	NM_001455	HPRD:04061	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
19-PTNLD28-TUMOR_peak_94575	chr7	102771820	102771928	+	8.44934	NA	intron (NM_198990, intron 1 of 5)	AluSx|SINE|Alu	10976	NR_026660	100129424	Hs.720729	NR_026660		RPL19P12	RPL19_4_829	ribosomal protein L19 pseudogene 12	pseudo
19-PTNLD28-TUMOR_peak_25933	chr12	104708048	104708232	+	8.44934	NA	intron (NM_182743, intron 3 of 13)	intron (NM_182743, intron 3 of 13)	10630	NM_001008394	493861	Hs.659857	NM_001008394	HPRD:17415	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
19-PTNLD28-TUMOR_peak_62140	chr20	53600370	53600543	+	8.44934	NA	Intergenic	LTR2B|LTR|ERV1	-439125	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_95676	chr7	137693660	137693758	+	8.44934	NA	Intergenic	Intergenic	-6862	NM_001253775	64764	Hs.490273	NM_194071	HPRD:16391	CREB3L2	BBF2H7	cAMP responsive element binding protein 3-like 2	protein-coding
19-PTNLD28-TUMOR_peak_51015	chr2	9954111	9954212	+	8.44934	NA	Intergenic	Intergenic	-29410	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_55570	chr2	128421841	128421964	+	8.44934	NA	exon (NM_017980, exon 1 of 10)	exon (NM_017980, exon 1 of 10)	265	NM_017980	55679	Hs.469881	NM_017980	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_53654	chr2	79219979	79220194	+	8.44934	NA	Intergenic	Intergenic	-32726	NM_001008387	130120	Hs.447084	NM_198448	HPRD:10137	REG3G	LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429	regenerating islet-derived 3 gamma	protein-coding
19-PTNLD28-TUMOR_peak_53398	chr2	71262752	71262951	+	8.44934	NA	Intergenic	Intergenic	11646	NR_002185	79315	Hs.327033	NR_002185	ENSG00000205847	OR7E91P	-	olfactory receptor, family 7, subfamily E, member 91 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_21496	chr11	118309458	118309625	+	8.44809	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	2336	NM_005933	4297	Hs.258855	NM_005933	HPRD:01162	KMT2A	ALL-1|CXXC7|HRX|HTRX1|MLL|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS	lysine (K)-specific methyltransferase 2A	protein-coding
19-PTNLD28-TUMOR_peak_74263	chr4	7637231	7637389	+	8.44809	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	-118507	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_79887	chr5	54033988	54034162	+	8.44809	NA	intron (NR_104658, intron 1 of 2)	intron (NR_104658, intron 1 of 2)	6011	NR_104658	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_38330	chr16	67336897	67337007	+	8.44809	NA	intron (NM_001100915, intron 4 of 15)	intron (NM_001100915, intron 4 of 15)	23460	NM_001129731	25894	Hs.188781	NM_015432	HPRD:10890	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding
19-PTNLD28-TUMOR_peak_32436	chr15	20226740	20226897	+	8.44809	NA	Intergenic	Intergenic	-261179	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_19879	chr11	72296799	72296966	+	8.44809	NA	intron (NM_001243784, intron 14 of 30)	intron (NM_001243784, intron 14 of 30)	29292	NR_029603	406931		NR_029603		MIR139	MIR139-3p|MIRN139	microRNA 139	ncRNA
19-PTNLD28-TUMOR_peak_2905	chr1	42675466	42675678	+	8.44809	NA	intron (NM_014947, intron 5 of 12)	L1PBb|LINE|L1	-45177	NM_033553	2980	Hs.778	NM_033553	HPRD:00767	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A (guanylin)	protein-coding
19-PTNLD28-TUMOR_peak_48767	chr19	36630409	36630681	+	8.44570	NA	promoter-TSS (NM_001749)	promoter-TSS (NM_001749)	-373	NM_001003962	826	Hs.515371	NM_001749	HPRD:00240	CAPNS1	30K|CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1	calpain, small subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_6209	chr1	144568272	144568526	+	8.44570	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	44320	NR_003242	767846	Hs.657186	NR_003242		PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_8018	chr1	167906762	167906876	+	8.43995	NA	promoter-TSS (NM_001143674)	promoter-TSS (NM_001143674)	-512	NM_001143674	25874	Hs.517768	NM_015415	HPRD:08525	MPC2	BRP44	mitochondrial pyruvate carrier 2	protein-coding
19-PTNLD28-TUMOR_peak_49398	chr19	45973005	45973176	+	8.43995	NA	intron (NM_006732, intron 1 of 3)	intron (NM_006732, intron 1 of 3)	1837	NM_006732	2354	Hs.590958	NM_006732	HPRD:01270	FOSB	AP-1|G0S3|GOS3|GOSB	FBJ murine osteosarcoma viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_38057	chr16	57652366	57652479	+	8.43791	NA	Intergenic	AluSx1|SINE|Alu	-1183	NM_001290142	9289	Hs.513633	NM_005682	HPRD:06824	GPR56	BFPP|BPPR|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
19-PTNLD28-TUMOR_peak_96315	chr7	150653039	150653193	+	8.43791	NA	promoter-TSS (NM_172057)	promoter-TSS (NM_172057)	-199	NM_172057	3757	Hs.647099	NM_000238	HPRD:01069	KCNH2	ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding
19-PTNLD28-TUMOR_peak_19579	chr11	68037261	68037352	+	8.43791	NA	intron (NM_001300913, intron 1 of 4)	intron (NM_001300913, intron 1 of 4)	2163	NM_001300913	53838	Hs.303025	NM_022338	HPRD:10704	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
19-PTNLD28-TUMOR_peak_2103	chr1	32529074	32529228	+	8.43791	NA	Intergenic	Intergenic	-9352	NM_018056	55116	Hs.25544	NM_018056	HPRD:07662	TMEM39B	-	transmembrane protein 39B	protein-coding
19-PTNLD28-TUMOR_peak_4207	chr1	68025055	68025286	+	8.43791	NA	Intergenic	Intergenic	-125690	NM_001199741	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_19174	chr11	64510747	64511330	+	8.43710	NA	intron (NM_153819, intron 1 of 16)	CpG-4298	592	NM_001098671	10235	Hs.99491	NM_005825	HPRD:09278	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_56034	chr2	139260007	139260198	+	8.43710	NA	intron (NM_001001664, intron 1 of 10)	intron (NM_001001664, intron 1 of 10)	752	NM_001001664	339745	Hs.333297	NM_001001664	HPRD:11261	SPOPL	BTBD33	speckle-type POZ protein-like	protein-coding
19-PTNLD28-TUMOR_peak_73782	chr4	924970	925194	+	8.43710	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	1092	NM_005255	2580	Hs.369607	NM_005255	HPRD:03631	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_31334	chr14	75765421	75765973	+	8.43704	NA	Intergenic	Intergenic	4590	NR_038421	731223	Hs.534624	NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
19-PTNLD28-TUMOR_peak_110005	chrX	153829344	153829508	+	8.43704	NA	Intergenic	Intergenic	16008	NM_139250	246100	Hs.534310	NM_139250	HPRD:06607	CTAG1A	ESO1|LAGE2A	cancer/testis antigen 1A	protein-coding
19-PTNLD28-TUMOR_peak_75163	chr4	48947175	48947341	+	8.43446	NA	Intergenic	Intergenic	-38413	NM_001286774	132299	Hs.95835	NM_152398	HPRD:14873	OCIAD2	-	OCIA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_1373	chr1	22351492	22351732	+	8.43446	NA	promoter-TSS (NR_023919)	promoter-TSS (NR_023919)	-72	NR_023918	29092	Hs.279842	NR_023918	ENSG00000218510	LINC00339	HSPC157|NCRNA00339	long intergenic non-protein coding RNA 339	ncRNA
19-PTNLD28-TUMOR_peak_99079	chr8	68255446	68255705	+	8.43446	NA	5' UTR (NM_006421, exon 1 of 39)	5' UTR (NM_006421, exon 1 of 39)	337	NM_006421	10565	Hs.656902	NM_006421	HPRD:09163	ARFGEF1	ARFGEP1|BIG1|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_37479	chr16	33318247	33318643	+	8.43446	NA	Intergenic	Intergenic	-19743	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7264	chr1	156052688	156052782	+	8.43446	NA	promoter-TSS (NM_001093725)	promoter-TSS (NM_001093725)	398	NM_001282625	4000	Hs.594444	NM_005572	HPRD:01035	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1	lamin A/C	protein-coding
19-PTNLD28-TUMOR_peak_43129	chr17	66453400	66453647	+	8.43240	NA	exon (NM_017983, exon 1 of 13)	exon (NM_017983, exon 1 of 13)	130	NM_017983	55062	Hs.463964	NM_017983	HPRD:08540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
19-PTNLD28-TUMOR_peak_35635	chr16	686775	687081	+	8.43240	NA	promoter-TSS (NM_032366)	promoter-TSS (NM_032366)	-562	NR_109979	84326	Hs.239500	NM_032366	HPRD:17482	C16orf13	-	chromosome 16 open reading frame 13	protein-coding
19-PTNLD28-TUMOR_peak_89050	chr6	109705388	109705629	+	8.43240	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-1746	NM_001142401	8763	Hs.520313	NM_006016	HPRD:04523	CD164	MGC-24|MUC-24|endolyn	CD164 molecule, sialomucin	protein-coding
19-PTNLD28-TUMOR_peak_46573	chr19	1259595	1259713	+	8.43148	NA	TTS (NM_177401)	TTS (NM_177401)	-9611	NM_001300829	1153	Hs.618145	NM_001280	HPRD:08375	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
19-PTNLD28-TUMOR_peak_9408	chr1	203238178	203238433	+	8.42991	NA	Intergenic	Intergenic	-17975	NR_117097	100506775	Hs.443859	NR_117097		LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
19-PTNLD28-TUMOR_peak_79121	chr5	16807639	16808018	+	8.42991	NA	intron (NM_012334, intron 3 of 40)	intron (NM_012334, intron 3 of 40)	128557	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_71254	chr3	139654976	139655071	+	8.42991	NA	intron (NM_022131, intron 1 of 16)	CpG	996	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_92437	chr7	47522161	47522321	+	8.42991	NA	intron (NM_022748, intron 3 of 30)	intron (NM_022748, intron 3 of 30)	99501	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_90603	chr6	168962007	168962095	+	8.42845	NA	intron (NM_022138, intron 7 of 12)	intron (NM_022138, intron 7 of 12)	120220	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_29464	chr14	23306450	23306594	+	8.42242	NA	intron (NM_004995, intron 1 of 9)	CpG	780	NM_004995	4323	Hs.2399	NM_004995	HPRD:02856	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_23307	chr12	19282591	19282815	+	8.42242	NA	promoter-TSS (NM_001190860)	promoter-TSS (NM_001190860)	77	NM_001190860	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_84619	chr5	180794367	180794532	+	8.42242	NA	exon (NM_001005277, exon 1 of 1).3	exon (NM_001005277, exon 1 of 1).3	161	NM_001005221	729759	Hs.632360	NM_001005221	HPRD:14971	OR4F29	OR7-21	olfactory receptor, family 4, subfamily F, member 29	protein-coding
19-PTNLD28-TUMOR_peak_37067	chr16	28802276	28802377	+	8.42242	NA	Intergenic	AluSx|SINE|Alu	-32043	NM_148416	11273	Hs.460499	NM_007245	HPRD:06394	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2-like	protein-coding
19-PTNLD28-TUMOR_peak_4741	chr1	89449664	89449758	+	8.42242	NA	5' UTR (NM_019610, exon 2 of 2)	5' UTR (NM_019610, exon 2 of 2)	8932	NM_019610	494115	Hs.481898	NM_019610	HPRD:17417	RBMXL1	RBM1	RNA binding motif protein, X-linked-like 1	protein-coding
19-PTNLD28-TUMOR_peak_3598	chr1	54302979	54303081	+	8.42186	NA	intron (NM_001168551, intron 1 of 17)	AluSz|SINE|Alu	1195	NM_018087	55706	Hs.476525	NM_018087	HPRD:08547	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
19-PTNLD28-TUMOR_peak_107543	chrX	11129818	11129951	+	8.41974	NA	intron (NM_005333, intron 1 of 6)	intron (NM_005333, intron 1 of 6)	478	NM_001171991	3052	Hs.211571	NM_005333	HPRD:02085	HCCS	CCHL|MCOPS7|MLS	holocytochrome c synthase	protein-coding
19-PTNLD28-TUMOR_peak_50378	chr19	55964420	55964575	+	8.41974	NA	3' UTR (NM_024710, exon 6 of 6)	3' UTR (NM_024710, exon 6 of 6)	8552	NM_024710	79763	Hs.467306	NM_024710	HPRD:08030	ISOC2	-	isochorismatase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_57783	chr2	201770576	201770670	+	8.41974	NA	Intergenic	MER102b|DNA|hAT-Charlie	13982	NM_001142356	60491	Hs.145284	NM_021824	HPRD:10424	NIF3L1	ALS2CR1|CALS-7	NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_87599	chr6	43552867	43553090	+	8.41974	NA	intron (NM_001291969, intron 2 of 8)	MER21B|LTR|ERVL	9100	NM_006502	5429	Hs.655467	NM_006502	HPRD:04913	POLH	RAD30|RAD30A|XP-V|XPV	polymerase (DNA directed), eta	protein-coding
19-PTNLD28-TUMOR_peak_97862	chr8	27695286	27695643	+	8.41974	NA	5' UTR (NM_018492, exon 1 of 8)	5' UTR (NM_018492, exon 1 of 8)	148	NM_018492	55872	Hs.104741	NM_018492	HPRD:17822	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
19-PTNLD28-TUMOR_peak_5010	chr1	94798625	94798727	+	8.41974	NA	Intergenic	Intergenic	-85257	NM_002858	5825	Hs.700576	NM_002858	HPRD:01368	ABCD3	ABC43|PMP70|PXMP1|ZWS2	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding
19-PTNLD28-TUMOR_peak_25607	chr12	93964725	93964914	+	8.41974	NA	promoter-TSS (NM_001270468)	promoter-TSS (NM_001270468)	62	NM_001270468	8835	Hs.485572	NM_003877	HPRD:05490	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
19-PTNLD28-TUMOR_peak_95954	chr7	142219113	142219292	+	8.41974	NA	Intergenic	Intergenic	-154929	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_36486	chr16	15476093	15476209	+	8.41926	NA	Intergenic	Intergenic	-4000	NM_001277325	100288332	Hs.676266	NM_001277325	ENSG00000183793	NPIPA5	NPIP	nuclear pore complex interacting protein family, member A5	protein-coding
19-PTNLD28-TUMOR_peak_100694	chr8	126556364	126556505	+	8.41926	NA	Intergenic	Kanga1d|DNA|TcMar-Tc2	111983	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_104736	chr9	97681812	97682092	+	8.41925	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	109708	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_8694	chr1	182573062	182573389	+	8.41903	NA	intron (NM_002928, intron 1 of 4)	intron (NM_002928, intron 1 of 4)	323	NM_002928	6004	Hs.413297	NM_002928	HPRD:03945	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G-protein signaling 16	protein-coding
19-PTNLD28-TUMOR_peak_24013	chr12	48124098	48124484	+	8.41903	NA	Intergenic	Intergenic	-4936	NM_001172440	8909	Hs.997	NM_006025	HPRD:12110	ENDOU	P11|PP11|PRSS26	endonuclease, polyU-specific	protein-coding
19-PTNLD28-TUMOR_peak_56182	chr2	147867939	147868097	+	8.41903	NA	Intergenic	Intergenic	523393	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_81990	chr5	127534919	127535096	+	8.41903	NA	Intergenic	MER54A|LTR|ERVL	115524	NR_046207	6558	Hs.162585	NM_001046	HPRD:06775	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_2079	chr1	32254550	32254765	+	8.41903	NA	Intergenic	Intergenic	-24993	NM_001294335	576	Hs.524138	NM_001703	HPRD:04063	BAI2	-	brain-specific angiogenesis inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_39185	chr16	85454415	85454579	+	8.41903	NA	Intergenic	Intergenic	-114566	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_35699	chr16	1143509	1143757	+	8.41903	NA	exon (NM_207419, exon 4 of 5)	exon (NM_207419, exon 4 of 5)	2611	NM_207419	390664	Hs.527853	NM_207419		C1QTNF8	CTRP8|UNQ5829	C1q and tumor necrosis factor related protein 8	protein-coding
19-PTNLD28-TUMOR_peak_5986	chr1	120325372	120325482	+	8.41903	NA	Intergenic	LTR16C|LTR|ERVL	-13872	NM_001166107	3158	Hs.59889	NM_005518	HPRD:02580	HMGCS2	-	3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_68102	chr3	49171032	49171280	+	8.41903	NA	promoter-TSS (NM_002292)	promoter-TSS (NM_002292)	-557	NM_002292	3913	Hs.439726	NM_002292	HPRD:01034	LAMB2	LAMS|NPHS5	laminin, beta 2 (laminin S)	protein-coding
19-PTNLD28-TUMOR_peak_55773	chr2	132430836	132431115	+	8.41842	NA	Intergenic	Intergenic	36377	NR_108087	101927994	Hs.635757	NR_108087	ENSG00000224559	LINC01087	-	long intergenic non-protein coding RNA 1087	ncRNA
19-PTNLD28-TUMOR_peak_18659	chr11	57365084	57365257	+	8.41343	NA	promoter-TSS (NM_001032295)	promoter-TSS (NM_001032295)	143	NM_000062	710	Hs.384598	NM_000062	HPRD:06033	SERPING1	C1IN|C1INH|C1NH|HAE1|HAE2	serpin peptidase inhibitor, clade G (C1 inhibitor), member 1	protein-coding
19-PTNLD28-TUMOR_peak_1795	chr1	27902486	27902664	+	8.41343	NA	intron (NM_001029882, intron 1 of 6)	CpG	27430	NM_001029882	27245	Hs.469280	NM_001029882	HPRD:10885	AHDC1	MRD25	AT hook, DNA binding motif, containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80911	chr5	79379221	79379533	+	8.41343	NA	TTS (NM_003248)	TTS (NM_003248)	111	NR_109930	101929215		NR_109930	ENSG00000249825	CTD-2201I18.1	-	uncharacterized LOC101929215	ncRNA
19-PTNLD28-TUMOR_peak_50349	chr19	55691429	55691611	+	8.41262	NA	promoter-TSS (NM_001297774)	promoter-TSS (NM_001297774)	200	NM_003180	6861	Hs.631566	NM_003180		SYT5	-	synaptotagmin V	protein-coding
19-PTNLD28-TUMOR_peak_1320	chr1	21581827	21581972	+	8.41262	NA	intron (NM_001113348, intron 8 of 18)	intron (NM_001113348, intron 8 of 18)	24284	NM_001113347	1889	Hs.195080	NM_001397	HPRD:02690	ECE1	ECE	endothelin converting enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_51973	chr2	30991596	30991922	+	8.41262	NA	intron (NM_144575, intron 5 of 22)	L1M5|LINE|L1	38552	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_109019	chrX	102884950	102885106	+	8.41262	NA	exon (NM_004780, exon 3 of 3)	exon (NM_004780, exon 3 of 3)	1136	NM_001006639	9338	Hs.95243	NM_004780	HPRD:02211	TCEAL1	SIIR|WEX9|p21|pp21	transcription elongation factor A (SII)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_73589	chr3	196388330	196388510	+	8.41262	NA	exon (NM_198565, exon 3 of 3)	exon (NM_198565, exon 3 of 3)	21764	NM_198565	375387	Hs.702186	NM_198565	HPRD:17452	NRROS	GARPL1|LRRC33|UNQ3030	negative regulator of reactive oxygen species	protein-coding
19-PTNLD28-TUMOR_peak_9450	chr1	203551155	203551259	+	8.41262	NA	Intergenic	Intergenic	-44708	NM_001001396	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_67590	chr3	39093841	39093970	+	8.41262	NA	intron (NM_020839, intron 1 of 18)	CpG	398	NM_020839	57599	Hs.109778	NM_020839	HPRD:11146	WDR48	P80|SPG60|UAF1	WD repeat domain 48	protein-coding
19-PTNLD28-TUMOR_peak_61081	chr20	39248350	39248539	+	8.41262	NA	Intergenic	L1PA3|LINE|L1	69436	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_90968	chr7	3102753	3102908	+	8.41262	NA	Intergenic	MIR3|SINE|MIR	-19251	NM_032415	84433	Hs.648101	NM_032415	HPRD:06234	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_10810	chr1	231014401	231014566	+	8.41262	NA	intron (NR_110681, intron 2 of 2)	intron (NR_110681, intron 2 of 2)	3891	NR_110681	101927604	Hs.638929	NR_110681	ENSG00000223393	LOC101927604	-	uncharacterized LOC101927604	ncRNA
19-PTNLD28-TUMOR_peak_73835	chr4	1522756	1523061	+	8.41262	NA	Intergenic	CpG	-122678	NM_001290079	54729	Hs.526396	NM_001290079		NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_88693	chr6	89732600	89732742	+	8.41262	NA	Intergenic	Intergenic	-57758	NM_006813	10957	Hs.75969	NM_006813	HPRD:08412	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline-rich nuclear receptor coactivator 1	protein-coding
19-PTNLD28-TUMOR_peak_30898	chr14	68200459	68200645	+	8.41262	NA	exon (NM_152443, exon 9 of 9)	exon (NM_152443, exon 9 of 9)	31949	NM_152443	145226	Hs.415322	NM_152443	HPRD:10585	RDH12	LCA13|LCA3|RP53|SDR7C2	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_21761	chr11	122754037	122754353	+	8.41262	NA	intron (NM_024806, intron 1 of 8)	intron (NM_024806, intron 1 of 8)	959	NM_199124	79864	Hs.164705	NM_024806	HPRD:08035	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
19-PTNLD28-TUMOR_peak_85063	chr6	6196896	6197020	+	8.41262	NA	intron (NM_000129, intron 9 of 14)	intron (NM_000129, intron 9 of 14)	123966	NM_000129	2162	Hs.335513	NM_000129	HPRD:00604	F13A1	F13A	coagulation factor XIII, A1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_55202	chr2	118521479	118521791	+	8.41262	NA	Intergenic	Intergenic	-50620	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_11110	chr1	235871942	235872143	+	8.41262	NA	intron (NM_001301365, intron 44 of 52)	MER68|LTR|ERVL	-57988	NM_001098721	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_45492	chr18	43840049	43840266	+	8.41262	NA	intron (NM_001008239, intron 3 of 3)	intron (NM_001008239, intron 3 of 3)	-74030	NM_152470	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_69867	chr3	112973156	112973417	+	8.41262	NA	intron (NM_033254, intron 4 of 19)	intron (NM_033254, intron 4 of 19)	41911	NM_033254	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_65336	chr22	36767103	36767238	+	8.41136	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	16893	NM_002473	4627	Hs.474751	NM_002473	HPRD:01177	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin, heavy chain 9, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_66753	chr3	13597249	13597458	+	8.41136	NA	intron (NM_001998, intron 1 of 16)	intron (NM_001998, intron 1 of 16)	6728	NM_001004019	2199	Hs.198862	NM_001998	HPRD:00630	FBLN2	-	fibulin 2	protein-coding
19-PTNLD28-TUMOR_peak_6943	chr1	153329664	153329774	+	8.41136	NA	promoter-TSS (NM_002965)	promoter-TSS (NM_002965)	-611	NM_002965	6280	Hs.112405	NM_002965	HPRD:00472	S100A9	60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14	S100 calcium binding protein A9	protein-coding
19-PTNLD28-TUMOR_peak_101396	chr8	141501545	141501658	+	8.40810	NA	Intergenic	AluJr|SINE|Alu	-19796	NM_017444	54108	Hs.279704	NM_017444	HPRD:06275	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
19-PTNLD28-TUMOR_peak_51747	chr2	27631882	27631972	+	8.40810	NA	intron (NM_177983, intron 1 of 9)	CpG	623	NM_177983	5496	Hs.643951	NM_177983	HPRD:09237	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent, 1G	protein-coding
19-PTNLD28-TUMOR_peak_19460	chr11	67030265	67030391	+	8.40810	NA	Intergenic	L2b|LINE|L2	-3577	NM_001619	156	Hs.83636	NM_001619	HPRD:00182	ADRBK1	BARK1|BETA-ARK1|GRK2	adrenergic, beta, receptor kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_53867	chr2	86225489	86225716	+	8.40741	NA	Intergenic	Intergenic	25389	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
19-PTNLD28-TUMOR_peak_102084	chr9	5633397	5633532	+	8.40741	NA	intron (NM_001206557, intron 1 of 24)	intron (NM_001206557, intron 1 of 24)	4345	NM_001206557	57589	Hs.211520	NM_020829	HPRD:13858	RIC1	CIP150|KIAA1432|bA207C16.1	RAB6A GEF complex partner 1	protein-coding
19-PTNLD28-TUMOR_peak_39632	chr17	1552122	1552291	+	8.40741	NA	exon (NM_031430, exon 4 of 8)	exon (NM_031430, exon 4 of 8)	1186	NM_031430	83547	Hs.534497	NM_031430	HPRD:09706	RILP	-	Rab interacting lysosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_76744	chr4	119202210	119202307	+	8.40741	NA	3' UTR (NM_003619, exon 13 of 13)	3' UTR (NM_003619, exon 13 of 13)	1913	NR_002963	677809	Hs.744742	NR_002963	ENSG00000269893	SNORA24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA
19-PTNLD28-TUMOR_peak_32469	chr15	20775741	20775910	+	8.40741	NA	intron (NR_027411, intron 12 of 17)	intron (NR_027411, intron 12 of 17)	8151	NR_027411	729786	Hs.592025	NR_027411		GOLGA8CP	GOLGA8C	golgin A8 family, member C, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_8815	chr1	184132943	184133044	+	8.40420	NA	Intergenic	Intergenic	112208	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_46886	chr19	6077135	6077364	+	8.40420	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	33415	NM_000635	5990	Hs.465709	NM_000635	HPRD:00824	RFX2	-	regulatory factor X, 2 (influences HLA class II expression)	protein-coding
19-PTNLD28-TUMOR_peak_80121	chr5	59103486	59103746	+	8.40420	NA	intron (NM_001165899, intron 3 of 16)	MER115|DNA|hAT-Tip100	-39178	NM_001197218	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_5267	chr1	107469467	107469682	+	8.40420	NA	Intergenic	Intergenic	-129693	NM_018137	55170	Hs.26006	NM_018137	HPRD:10505	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_10330	chr1	224007462	224007719	+	8.40420	NA	intron (NM_005426, intron 2 of 18)	L2a|LINE|L2	26084	NM_001031685	7159	Hs.523968	NM_005426	HPRD:11803	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_88569	chr6	84743303	84743537	+	8.40420	NA	promoter-TSS (NM_138409)	promoter-TSS (NM_138409)	0	NM_138409	112609	Hs.370055	NM_138409	HPRD:12843	MRAP2	BMIQ18|C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_87642	chr6	43996732	43996901	+	8.40420	NA	Intergenic	LTR33B|LTR|ERVL	28479	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_15691	chr10	114571404	114571943	+	8.40420	NA	intron (NM_145206, intron 7 of 7)	intron (NM_145206, intron 7 of 7)	-11582	NR_120684	103344931	Hs.458447	NR_120684		LOC103344931	-	uncharacterized LOC103344931	ncRNA
19-PTNLD28-TUMOR_peak_88619	chr6	86630635	86630816	+	8.40420	NA	Intergenic	MLT2F|LTR|ERVL	-242274	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_33293	chr15	42384747	42384870	+	8.40420	NA	intron (NM_178034, intron 1 of 19)	intron (NM_178034, intron 1 of 19)	1944	NM_178034	283748	Hs.380225	NM_178034	HPRD:07145	PLA2G4D	cPLA2delta	phospholipase A2, group IVD (cytosolic)	protein-coding
19-PTNLD28-TUMOR_peak_40304	chr17	15848509	15848627	+	8.40420	NA	exon (NM_000676, exon 1 of 2)	exon (NM_000676, exon 1 of 2)	337	NM_000676	136	Hs.167046	NM_000676	HPRD:15971	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
19-PTNLD28-TUMOR_peak_82127	chr5	131862511	131862720	+	8.40420	NA	Intergenic	LTR85a|LTR|Gypsy?	16599	NM_000879	3567	Hs.2247	NM_000879	HPRD:00997	IL5	EDF|IL-5|TRF	interleukin 5	protein-coding
19-PTNLD28-TUMOR_peak_1569	chr1	25005104	25005271	+	8.40420	NA	Intergenic	MER41B|LTR|ERV1	35593	NM_005839	10250	Hs.18192	NM_005839	HPRD:10441	SRRM1	160-KD|POP101|SRM160	serine/arginine repetitive matrix 1	protein-coding
19-PTNLD28-TUMOR_peak_97291	chr8	16527664	16527957	+	8.40420	NA	Intergenic	L1PA2|LINE|L1	331864	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_63616	chr21	41551243	41551389	+	8.40420	NA	intron (NR_073202, intron 14 of 32)	intron (NR_073202, intron 14 of 32)	33042	NR_039917	100616148		NR_039917		MIR4760	-	microRNA 4760	ncRNA
19-PTNLD28-TUMOR_peak_20583	chr11	92983139	92983286	+	8.40420	NA	Intergenic	Intergenic	-52071	NM_152313	120103	Hs.148766	NM_152313		SLC36A4	PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_5046	chr1	95341565	95341720	+	8.40420	NA	intron (NM_001301079, intron 11 of 13)	intron (NM_001301079, intron 11 of 13)	49722	NM_001286056	1266	Hs.483454	NM_001839	HPRD:03848	CNN3	-	calponin 3, acidic	protein-coding
19-PTNLD28-TUMOR_peak_50124	chr19	52839649	52839827	+	8.40420	NA	5' UTR (NM_001161425, exon 1 of 6)	5' UTR (NM_001161425, exon 1 of 6)	240	NM_001161425	162963	Hs.147025	NM_173530	HPRD:11735	ZNF610	-	zinc finger protein 610	protein-coding
19-PTNLD28-TUMOR_peak_42074	chr17	46713982	46714174	+	8.40420	NA	Intergenic	CpG	-4157	NR_029582	406972		NR_029582	miRBase:MI0000238	MIR196A1	MIRN196-1|MIRN196A1	microRNA 196a-1	ncRNA
19-PTNLD28-TUMOR_peak_52169	chr2	37962195	37962519	+	8.40420	NA	Intergenic	Intergenic	-62679	NM_001270436	10602	Hs.369574	NM_006449	HPRD:09364	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
19-PTNLD28-TUMOR_peak_97778	chr8	26372247	26372355	+	8.40420	NA	promoter-TSS (NM_007257)	promoter-TSS (NM_007257)	592	NM_001197293	1808	Hs.593187	NM_001386	HPRD:03914	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_92310	chr7	44751719	44751845	+	8.40420	NA	Intergenic	Intergenic	-36383	NM_001300959	83637	Hs.77978	NM_031449	HPRD:13225	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger, MIZ-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_51010	chr2	9904379	9904580	+	8.40420	NA	Intergenic	LTR71A|LTR|ERV1	-79092	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_106392	chr9	132536030	132536236	+	8.40420	NA	Intergenic	Intergenic	-20789	NM_004878	9536	Hs.146688	NM_004878	HPRD:05528	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
19-PTNLD28-TUMOR_peak_96396	chr7	151216227	151216415	+	8.40274	NA	intron (NM_005614, intron 1 of 7)	CpG	689	NM_005614	6009	Hs.283521	NM_005614	HPRD:03188	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding
19-PTNLD28-TUMOR_peak_11602	chr10	501698	501865	+	8.40237	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	185937	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_11601	chr10	501331	501526	+	8.40237	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	186290	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_70692	chr3	128998548	128998688	+	8.40237	NA	exon (NM_020187, exon 2 of 7)	exon (NM_020187, exon 2 of 7)	801	NM_001006109	56941	Hs.458320	NM_020187	HPRD:13119	HMCES	C3orf37|SRAPD1	5-hydroxymethylcytosine (hmC) binding, ES cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_58822	chr2	232466474	232466580	+	8.40185	NA	Intergenic	Intergenic	8952	NM_152614	165100	Hs.98104	NM_152614	HPRD:14602	C2orf57	-	chromosome 2 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_87535	chr6	42812346	42812456	+	8.40021	NA	intron (NM_015349, intron 5 of 11)	L2c|LINE|L2	23607	NM_015349	23506	Hs.658033	NM_015349	HPRD:17180	GLTSCR1L	KIAA0240	GLTSCR1-like	protein-coding
19-PTNLD28-TUMOR_peak_24114	chr12	49595252	49595365	+	8.40021	NA	Intergenic	Intergenic	-12201	NM_006009	7846	Hs.654422	NM_006009	HPRD:03959	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin, alpha 1a	protein-coding
19-PTNLD28-TUMOR_peak_17854	chr11	32520232	32520373	+	8.40021	NA	Intergenic	AluSx1|SINE|Alu	62717	NR_120546	51352	Hs.567499	NM_015855		WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_21066	chr11	110044998	110045170	+	8.40021	NA	TTS (NM_001260493)	TTS (NM_001260493)	80997	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
19-PTNLD28-TUMOR_peak_9259	chr1	201717532	201717787	+	8.40021	NA	intron (NM_001167738, intron 1 of 26)	intron (NM_001167738, intron 1 of 26)	8696	NM_001167738	89796	Hs.585374	NM_020443	HPRD:10113	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
19-PTNLD28-TUMOR_peak_6061	chr1	121159286	121159410	+	8.40021	NA	Intergenic	AluJr|SINE|Alu	-19583	NR_104189	100873165	Hs.568525	NR_104189		SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42419	chr17	54080229	54080342	+	8.40021	NA	Intergenic	L1PA3|LINE|L1	-150551	NM_153228	162282	Hs.673040	NM_153228	HPRD:08238	ANKFN1	-	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_77117	chr4	136369193	136369402	+	8.40021	NA	Intergenic	L1PA3|LINE|L1	439951	NR_103762	100507528	Hs.518987	NR_103762	ENSG00000248330	LINC00613	-	long intergenic non-protein coding RNA 613	ncRNA
19-PTNLD28-TUMOR_peak_5006	chr1	94740745	94741120	+	8.40021	NA	Intergenic	Intergenic	-37625	NM_004815	9411	Hs.483238	NM_004815		ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
19-PTNLD28-TUMOR_peak_4337	chr1	71555704	71555842	+	8.40021	NA	intron (NR_046217, intron 1 of 3)	intron (NR_046217, intron 1 of 3)	8766	NR_046217	100852410	Hs.535534	NR_046217	ENSG00000229956	ZRANB2-AS2	-	ZRANB2 antisense RNA 2 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_62435	chr20	58683623	58683782	+	8.40021	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	20961	NR_109918	729296	Hs.534781	NR_109916		LOC729296	-	uncharacterized LOC729296	ncRNA
19-PTNLD28-TUMOR_peak_81363	chr5	101467519	101467612	+	8.40021	NA	Intergenic	L1HS|LINE|L1	164688	NM_180991	353189	Hs.127648	NM_180991	HPRD:12354	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family, member 4C1	protein-coding
19-PTNLD28-TUMOR_peak_62668	chr20	62892590	62892846	+	8.40021	NA	intron (NM_018257, intron 2 of 5)	L2|LINE|L2	5670	NM_001104925	55251	Hs.744845	NM_018257	HPRD:12764	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_104785	chr9	98770796	98770964	+	8.40021	NA	intron (NM_020207, intron 18 of 18)	intron (NM_020207, intron 18 of 18)	13157	NR_024129	100188953	Hs.434310	NR_024129	ENSG00000225194	LINC00092	NCRNA00092|bA346B7.1	long intergenic non-protein coding RNA 92	ncRNA
19-PTNLD28-TUMOR_peak_1978	chr1	31110136	31110259	+	8.40021	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-81422	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61094	chr20	39452388	39452549	+	8.40021	NA	Intergenic	LTR16B2|LTR|ERVL	-134588	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_16380	chr10	134957530	134957736	+	8.40021	NA	Intergenic	LTR13|LTR|ERVK	-16338	NM_152643	85442	Hs.530685	NM_152643	HPRD:13931	KNDC1	C10orf23|RASGEF2|bB439H18.3	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33268	chr15	42091468	42091643	+	8.40021	NA	intron (NR_049762, intron 2 of 28)	intron (NR_049762, intron 2 of 28)	24923	NR_049761	23005	Hs.513661	NM_014994	HPRD:17465	MAPKBP1	JNKBP-1	mitogen-activated protein kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_77993	chr4	169732462	169732712	+	8.40021	NA	intron (NM_016081, intron 10 of 20)	intron (NM_016081, intron 10 of 20)	-20569	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_81113	chr5	90421783	90422022	+	8.40021	NA	intron (NR_003149, intron 87 of 89)	intron (NR_003149, intron 87 of 89)	188317	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_68068	chr3	48746497	48746679	+	8.40021	NA	intron (NM_001005910, intron 1 of 2)	intron (NM_001005910, intron 1 of 2)	8123	NM_001146179	51447	Hs.595983	NM_016291	HPRD:07380	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_32732	chr15	28973363	28973495	+	8.40021	NA	Intergenic	Intergenic	-9300	NR_026589	440253	Hs.558967	NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_60545	chr20	31713710	31713937	+	8.40021	NA	Intergenic	MIRc|SINE|MIR	-42137	NM_080574	140683	Hs.125960	NM_080574	HPRD:12781	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92457	chr7	47680661	47680853	+	8.40021	NA	Intergenic	Intergenic	-14085	NM_001123065	401335	Hs.520816	NM_001123065	ENSG00000221845	C7orf65	-	chromosome 7 open reading frame 65	protein-coding
19-PTNLD28-TUMOR_peak_105611	chr9	117384363	117384536	+	8.40021	NA	intron (NM_153045, intron 2 of 8)	intron (NM_153045, intron 2 of 8)	10743	NM_153045	203197	Hs.522357	NM_153045	HPRD:12988	C9orf91	-	chromosome 9 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_95015	chr7	123672763	123672976	+	8.40021	NA	exon (NM_001136002, exon 1 of 1)	exon (NM_001136002, exon 1 of 1)	654	NM_001136002	730130	Hs.450249	NM_001136002	ENSG00000234224	TMEM229A	-	transmembrane protein 229A	protein-coding
19-PTNLD28-TUMOR_peak_998	chr1	15851511	15851611	+	8.40010	NA	promoter-TSS (NR_102733)	promoter-TSS (NR_102733)	-276	NM_032996	842	Hs.329502	NM_001229	HPRD:03756	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_57071	chr2	175547204	175547334	+	8.39117	NA	intron (NM_001077269, intron 1 of 7)	CpG	358	NM_001077269	7456	Hs.128067	NM_003387	HPRD:03835	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_291	chr1	3542221	3542395	+	8.39117	NA	exon (NM_182752, exon 3 of 5)	exon (NM_182752, exon 3 of 5)	752	NM_182752	127262	Hs.20529	NM_182752	HPRD:14037	TPRG1L	FAM79A|h-mover|mover	tumor protein p63 regulated 1-like	protein-coding
19-PTNLD28-TUMOR_peak_11149	chr1	236530082	236530347	+	8.39117	NA	Intergenic	AluSx|SINE|Alu	-27466	NM_145861	128178	Hs.352224	NM_080738	HPRD:05965	EDARADD	ECTD11A|ECTD11B|ED3|EDA3	EDAR-associated death domain	protein-coding
19-PTNLD28-TUMOR_peak_72124	chr3	161133824	161133963	+	8.39117	NA	Intergenic	Intergenic	-10322	NR_102265	101243545	Hs.737526	NR_102265	ENSG00000240567	LOC101243545	-	uncharacterized LOC101243545	ncRNA
19-PTNLD28-TUMOR_peak_51481	chr2	20811197	20811324	+	8.39117	NA	Intergenic	Intergenic	-18952	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_6928	chr1	153233860	153234064	+	8.39117	NA	exon (NM_000427, exon 2 of 2)	exon (NM_000427, exon 2 of 2)	1783	NM_000427	4014	Hs.251680	NM_000427	HPRD:01070	LOR	-	loricrin	protein-coding
19-PTNLD28-TUMOR_peak_86522	chr6	30804833	30804991	+	8.39054	NA	Intergenic	AluJr|SINE|Alu	-45478	NM_001297652	780	Hs.631988	NM_001954	HPRD:02678	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_41974	chr17	45771800	45771990	+	8.39054	NA	promoter-TSS (NM_014726)	promoter-TSS (NM_014726)	-735	NM_014726	9755	Hs.94790	NM_014726	HPRD:12239	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43691	chr17	75882306	75882668	+	8.39054	NA	Intergenic	Intergenic	-2318	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	ncRNA
19-PTNLD28-TUMOR_peak_1897	chr1	29214338	29214624	+	8.39050	NA	intron (NM_001166007, intron 1 of 17)	intron (NM_001166007, intron 1 of 17)	878	NM_001166007	2035	Hs.175437	NM_004437	HPRD:00558	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19-PTNLD28-TUMOR_peak_11138	chr1	236305743	236305847	+	8.38957	NA	promoter-TSS (NM_003272)	promoter-TSS (NM_003272)	-37	NM_003272	7107	Hs.498160	NM_003272	HPRD:06878	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
19-PTNLD28-TUMOR_peak_48063	chr19	18521560	18521656	+	8.38957	NA	Intergenic	Intergenic	-8538	NM_032627	170463	Hs.515259	NM_032627	HPRD:09579	SSBP4	-	single stranded DNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_96588	chr7	154719395	154719526	+	8.38957	NA	promoter-TSS (NR_024477)	promoter-TSS (NR_024477)	-767	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1OS	PAXIP1-AS2	PAXIP1 opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_105165	chr9	109651480	109651589	+	8.38957	NA	intron (NM_021224, intron 1 of 12)	intron (NM_021224, intron 1 of 12)	26156	NM_021224	58499	Hs.370379	NM_021224	HPRD:10333	ZNF462	Zfp462	zinc finger protein 462	protein-coding
19-PTNLD28-TUMOR_peak_90747	chr7	562034	562228	+	8.38957	NA	non-coding (NR_033963, exon 1 of 3)	non-coding (NR_033963, exon 1 of 3)	2103	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	ncRNA
19-PTNLD28-TUMOR_peak_99864	chr8	103666561	103666706	+	8.38748	NA	promoter-TSS (NM_001032282)	promoter-TSS (NM_001032282)	-441	NR_103759	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_72081	chr3	159851683	159851825	+	8.38509	NA	intron (NR_108088, intron 3 of 9)	MER76|LTR|ERVL	73125	NR_108088	101928376	Hs.565865	NR_108088	ENSG00000244040	IL12A-AS1	-	IL12A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99477	chr8	91657865	91658590	+	8.38509	NA	promoter-TSS (NM_001146273)	promoter-TSS (NM_001146273)	-94	NM_001008495	169200	Hs.567759	NM_001008495	HPRD:16822	TMEM64	-	transmembrane protein 64	protein-coding
19-PTNLD28-TUMOR_peak_22733	chr12	6394279	6394408	+	8.38509	NA	Intergenic	Intergenic	-25259	NM_018173	55200	Hs.631660	NM_018173	HPRD:07692	PLEKHG6	MyoGEF	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding
19-PTNLD28-TUMOR_peak_97443	chr8	19865470	19865631	+	8.38509	NA	Intergenic	LTR48|LTR|ERV1	68968	NM_000237	4023	Hs.180878	NM_000237	HPRD:01999	LPL	HDLCQ11|LIPD	lipoprotein lipase	protein-coding
19-PTNLD28-TUMOR_peak_48783	chr19	36912031	36912125	+	8.38509	NA	promoter-TSS (NR_033748)	promoter-TSS (NR_033748)	2	NR_033748	644189	Hs.608412	NR_033748		LOC644189	-	acyl-CoA thioesterase 4 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_84082	chr5	173169559	173169682	+	8.38509	NA	intron (NR_108027, intron 1 of 2)	intron (NR_108027, intron 1 of 2)	3592	NR_108027	101928136	Hs.449267	NR_108027		LINC01484	-	long intergenic non-protein coding RNA 1484	ncRNA
19-PTNLD28-TUMOR_peak_60304	chr20	25228158	25228592	+	8.38509	NA	promoter-TSS (NM_002862)	promoter-TSS (NM_002862)	-331	NM_002862	5834	Hs.368157	NM_002862	HPRD:00720	PYGB	GPBB	phosphorylase, glycogen; brain	protein-coding
19-PTNLD28-TUMOR_peak_29597	chr14	24786543	24786773	+	8.38509	NA	TTS (NM_139247)	TTS (NM_139247)	4345	NM_181657	1241	Hs.567248	NM_181657	HPRD:03320	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
19-PTNLD28-TUMOR_peak_32028	chr14	100415594	100415876	+	8.38509	NA	Intergenic	Intergenic	-116016	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_49451	chr19	46389979	46390188	+	8.38509	NA	promoter-TSS (NM_015649)	promoter-TSS (NM_015649)	-707	NM_015649	26145	Hs.515477	NM_015649	HPRD:17159	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101478	chr8	142377261	142377433	+	8.38509	NA	promoter-TSS (NM_005293)	promoter-TSS (NM_005293)	18	NM_005293	2843	Hs.188859	NM_005293	HPRD:03550	GPR20	-	G protein-coupled receptor 20	protein-coding
19-PTNLD28-TUMOR_peak_8550	chr1	180137910	180138064	+	8.38446	NA	intron (NM_001004128, intron 2 of 12)	intron (NM_001004128, intron 2 of 12)	14019	NM_001004128	5768	Hs.744925	NM_002826	HPRD:06785	QSOX1	Q6|QSCN6	quiescin Q6 sulfhydryl oxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_49397	chr19	45972211	45972716	+	8.38446	NA	intron (NM_006732, intron 1 of 3)	CpG	1210	NM_006732	2354	Hs.590958	NM_006732	HPRD:01270	FOSB	AP-1|G0S3|GOS3|GOSB	FBJ murine osteosarcoma viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_93520	chr7	76243100	76243270	+	8.38281	NA	intron (NM_012230, intron 4 of 6)	intron (NM_012230, intron 4 of 6)	13435	NM_152992	22932	Hs.488877	NM_012230	HPRD:15974	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
19-PTNLD28-TUMOR_peak_33429	chr15	45493258	45493463	+	8.38281	NA	promoter-TSS (NM_138356)	promoter-TSS (NM_138356)	13	NM_138356	90525	Hs.310399	NM_138356	HPRD:14272	SHF	-	Src homology 2 domain containing F	protein-coding
19-PTNLD28-TUMOR_peak_102671	chr9	33101224	33101320	+	8.38219	NA	Intergenic	MER41B|LTR|ERV1	-24558	NM_018225	55234	Hs.655351	NM_018225	HPRD:11588	SMU1	BWD|SMU-1|fSAP57	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_41548	chr17	40714702	40714808	+	8.38219	NA	exon (NM_025233, exon 1 of 9)	exon (NM_025233, exon 1 of 9)	663	NM_001042532	80347	Hs.296422	NM_025233	HPRD:13080	COASY	DPCK|NBIA6|NBP|PPAT|UKR1|pOV-2	CoA synthase	protein-coding
19-PTNLD28-TUMOR_peak_32305	chr14	105332002	105332377	+	8.38219	NA	intron (NM_015005, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	539	NM_015005	283638	Hs.533721	NM_015005	HPRD:12388	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
19-PTNLD28-TUMOR_peak_103529	chr9	68424430	68424611	+	8.38156	NA	Intergenic	Intergenic	29855	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_49683	chr19	48828658	48828820	+	8.38118	NA	5' UTR (NM_001425, exon 1 of 5)	5' UTR (NM_001425, exon 1 of 5)	110	NM_001425	2014	Hs.9999	NM_001425	HPRD:18514	EMP3	YMP	epithelial membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_74197	chr4	6769545	6769767	+	8.38118	NA	Intergenic	Intergenic	-14803	NM_001100590	9778	Hs.79276	NM_014743	HPRD:11070	KIAA0232	-	KIAA0232	protein-coding
19-PTNLD28-TUMOR_peak_67841	chr3	45164694	45164846	+	8.37394	NA	intron (NM_022842, intron 1 of 8)	intron (NM_022842, intron 1 of 8)	23144	NM_022842	64866	Hs.476093	NM_022842	HPRD:16696	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_48092	chr19	18774238	18774383	+	8.37356	NA	intron (NM_018316, intron 1 of 2)	intron (NM_018316, intron 1 of 2)	-20115	NM_015321	23373	Hs.371096	NM_015321	HPRD:06339	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
19-PTNLD28-TUMOR_peak_85329	chr6	11223650	11223875	+	8.37356	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	9153	NM_182966	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_100218	chr8	117771515	117771636	+	8.37356	NA	Intergenic	Intergenic	-3513	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_38998	chr16	81861861	81861986	+	8.37356	NA	intron (NM_002661, intron 2 of 32)	AluY|SINE|Alu	49060	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_8157	chr1	171390083	171390181	+	8.37356	NA	Intergenic	Intergenic	-64534	NM_015172	23215	Hs.494614	NM_015172	HPRD:16539	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
19-PTNLD28-TUMOR_peak_17742	chr11	27740826	27740945	+	8.37356	NA	intron (NM_170731, intron 1 of 1)	CpG	409	NM_001143807	627	Hs.502182	NM_001709	HPRD:00214	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_97296	chr8	16575713	16575840	+	8.37356	NA	Intergenic	AluJr|SINE|Alu	283898	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_61908	chr20	50026586	50026720	+	8.37356	NA	intron (NM_001258296, intron 9 of 10)	AluY|SINE|Alu	42861	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	ncRNA
19-PTNLD28-TUMOR_peak_95279	chr7	129939780	129939960	+	8.37356	NA	intron (NM_001163446, intron 3 of 9)	intron (NM_001163446, intron 3 of 9)	6896	NM_016352	51200	Hs.93764	NM_016352	HPRD:07405	CPA4	CPA3	carboxypeptidase A4	protein-coding
19-PTNLD28-TUMOR_peak_18719	chr11	58555481	58555687	+	8.37356	NA	Intergenic	L1PA15-16|LINE|L1	-56137	NM_201648	10249	Hs.145384	NM_005838	HPRD:07603	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_19692	chr11	69647241	69647700	+	8.37356	NA	Intergenic	Intergenic	-13278	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_61496	chr20	45947769	45947996	+	8.37333	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	636	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
19-PTNLD28-TUMOR_peak_24430	chr12	53370111	53370300	+	8.36945	NA	Intergenic	L2c|LINE|L2	-26555	NM_001256293	3856	Hs.533782	NM_002273	HPRD:01015	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
19-PTNLD28-TUMOR_peak_90775	chr7	917562	917692	+	8.36945	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	1436	NM_015949	51608	Hs.107387	NM_015949	HPRD:12909	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_72881	chr3	185543392	185543560	+	8.36945	NA	promoter-TSS (NM_006548)	promoter-TSS (NM_006548)	-649	NM_001291869	10644	Hs.35354	NM_006548	HPRD:10507	IGF2BP2	IMP-2|IMP2|VICKZ2	insulin-like growth factor 2 mRNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_49492	chr19	46912061	46912218	+	8.36945	NA	Intergenic	AluJb|SINE|Alu	4780	NM_032040	83987	Hs.97876	NM_032040	HPRD:13009	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_92298	chr7	44620564	44620805	+	8.36945	NA	intron (NM_182547, intron 4 of 4)	intron (NM_182547, intron 4 of 4)	1143	NM_182547	222068	Hs.598832	NM_182547	HPRD:13666	TMED4	ERS25|HNLF	transmembrane emp24 protein transport domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_90833	chr7	1502391	1502579	+	8.36790	NA	Intergenic	AluJr|SINE|Alu	-3376	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_67940	chr3	46735095	46735187	+	8.36669	NA	promoter-TSS (NM_001190707)	promoter-TSS (NM_001190707)	5	NM_001190707	259173	Hs.517937	NM_147129	HPRD:10643	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_32228	chr14	104017876	104018026	+	8.36669	NA	Intergenic	Intergenic	10704	NM_001015049	9529	Hs.5443	NM_004873	HPRD:04862	BAG5	BAG-5	BCL2-associated athanogene 5	protein-coding
19-PTNLD28-TUMOR_peak_100040	chr8	108134678	108134808	+	8.36522	NA	Intergenic	MER52A|LTR|ERV1	-352271	NM_139166	137735	Hs.374668	NM_139166	HPRD:11608	ABRA	STARS	actin-binding Rho activating protein	protein-coding
19-PTNLD28-TUMOR_peak_82755	chr5	141089421	141089573	+	8.36522	NA	Intergenic	Intergenic	-27697	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_50550	chr19	58609229	58609337	+	8.36522	NA	intron (NM_001145542, intron 1 of 6)	intron (NM_001145542, intron 1 of 6)	447	NM_001145544	65982	Hs.235390	NM_023926	HPRD:07802	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_5673	chr1	114473270	114473390	+	8.36522	NA	intron (NM_152696, intron 1 of 14)	intron (NM_152696, intron 1 of 14)	-1183	NR_110726	101928846	Hs.232534	NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109870	chrX	152727675	152728087	+	8.36522	NA	intron (NR_073156, intron 4 of 12)	intron (NR_073156, intron 4 of 12)	8208	NM_017518	55559	Hs.170835	NM_017518	HPRD:18695	HAUS7	UCHL5IP|UIP1	HAUS augmin-like complex, subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_1053	chr1	16465401	16465590	+	8.36522	NA	intron (NM_004431, intron 3 of 16)	intron (NM_004431, intron 3 of 16)	17087	NM_004431	1969	Hs.171596	NM_004431	HPRD:01494	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
19-PTNLD28-TUMOR_peak_26780	chr12	122214197	122214293	+	8.36510	NA	3' UTR (NM_001080825, exon 12 of 12)	3' UTR (NM_001080825, exon 12 of 12)	17349	NM_019034	54509	Hs.644504	NM_019034	HPRD:15246	RHOF	ARHF|RIF	ras homolog family member F (in filopodia)	protein-coding
19-PTNLD28-TUMOR_peak_34556	chr15	75493936	75494122	+	8.36291	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-192	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_6819	chr1	151803340	151803462	+	8.36275	NA	intron (NM_005060, intron 1 of 10)	intron (NM_005060, intron 1 of 10)	947	NM_005060	6097	Hs.256022	NM_005060	HPRD:04250	RORC	NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR-related orphan receptor C	protein-coding
19-PTNLD28-TUMOR_peak_6274	chr1	145203550	145203740	+	8.36275	NA	intron (NM_001277444, intron 20 of 24)	intron (NM_001277444, intron 20 of 24)	-5468	NM_203458	388677	Hs.655156	NM_203458	HPRD:14833	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_23032	chr12	10875351	10875496	+	8.36275	NA	intron (NM_003651, intron 1 of 9)	CpG	530	NM_001145426	8531	Hs.221889	NM_003651	HPRD:10347	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y box binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_42822	chr17	61551615	61551728	+	8.36255	NA	Intergenic	Intergenic	-2751	NM_000789	1636	Hs.298469	NM_000789	HPRD:00108	ACE	ACE1|CD143|DCP|DCP1|ICH|MVCD3	angiotensin I converting enzyme	protein-coding
19-PTNLD28-TUMOR_peak_93969	chr7	93519342	93519495	+	8.36255	NA	intron (NM_006528, intron 2 of 4)	CpG	885	NM_006528	7980	Hs.438231	NM_006528	HPRD:08962	TFPI2	PP5|REF1|TFPI-2	tissue factor pathway inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_87249	chr6	38137992	38138402	+	8.36201	NA	3' UTR (NM_152733, exon 10 of 10)	3' UTR (NM_152733, exon 10 of 10)	350890	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_1327	chr1	21662430	21662636	+	8.35991	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	9501	NM_001113348	1889	Hs.195080	NM_001397	HPRD:02690	ECE1	ECE	endothelin converting enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_64262	chr22	18506325	18506569	+	8.35991	NA	intron (NM_015241, intron 1 of 31)	CpG	878	NM_015241	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_1677	chr1	26685376	26685568	+	8.35991	NA	Intergenic	MIR|SINE|MIR	-4851	NM_001039775	55057	Hs.128738	NM_017977		AIM1L	CRYBG2	absent in melanoma 1-like	protein-coding
19-PTNLD28-TUMOR_peak_91067	chr7	5342721	5342890	+	8.35991	NA	3' UTR (NM_001040661, exon 11 of 11)	3' UTR (NM_001040661, exon 11 of 11)	20244	NM_001040661	222962	Hs.4302	NM_153247	HPRD:15362	SLC29A4	ENT4|PMAT	solute carrier family 29 (equilibrative nucleoside transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_61882	chr20	49575853	49575965	+	8.35991	NA	promoter-TSS (NM_003859)	promoter-TSS (NM_003859)	558	NM_014484	27304	Hs.159410	NM_014484	HPRD:10092	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
19-PTNLD28-TUMOR_peak_88404	chr6	76458452	76458709	+	8.35991	NA	promoter-TSS (NM_004999)	promoter-TSS (NM_004999)	-313	NM_001300899	4646	Hs.149387	NM_004999	HPRD:02985	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
19-PTNLD28-TUMOR_peak_25112	chr12	67865503	67865786	+	8.35983	NA	Intergenic	Intergenic	-48218	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
19-PTNLD28-TUMOR_peak_90053	chr6	151590630	151590768	+	8.35983	NA	intron (NM_005100, intron 2 of 4)	intron (NM_005100, intron 2 of 4)	29565	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_17163	chr11	11458351	11458451	+	8.35983	NA	intron (NM_198516, intron 2 of 10)	intron (NM_198516, intron 2 of 10)	-83497	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_58558	chr2	222288018	222288158	+	8.35983	NA	intron (NM_004438, intron 17 of 17)	intron (NM_004438, intron 17 of 17)	148922	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_78035	chr4	170716778	170717060	+	8.35983	NA	Intergenic	LTR78|LTR|ERV1	-37826	NM_017867	54969	Hs.406756	NM_017867	HPRD:07924	C4orf27	-	chromosome 4 open reading frame 27	protein-coding
19-PTNLD28-TUMOR_peak_32738	chr15	29138508	29138603	+	8.35983	NA	Intergenic	Intergenic	-44734	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	golgin A6 family-like 7, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74114	chr4	5506330	5506510	+	8.35983	NA	Intergenic	Intergenic	-20463	NM_005750	10141	Hs.177972	NM_005750	HPRD:12826	C4orf6	aC1	chromosome 4 open reading frame 6	protein-coding
19-PTNLD28-TUMOR_peak_55230	chr2	119188124	119188396	+	8.35983	NA	Intergenic	Intergenic	172282	NR_110272	101927709	Hs.274529	NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
19-PTNLD28-TUMOR_peak_58465	chr2	220035999	220036262	+	8.35983	NA	TTS (NM_015680)	TTS (NM_015680)	-1313	NM_144712	151295	Hs.124565	NM_144712	HPRD:15350	SLC23A3	E2BP3|SVCT3|Yspl1	solute carrier family 23, member 3	protein-coding
19-PTNLD28-TUMOR_peak_72653	chr3	182315658	182315814	+	8.35983	NA	Intergenic	L2b|LINE|L2	-111586	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	FLJ46066	-	uncharacterized LOC401103	ncRNA
19-PTNLD28-TUMOR_peak_105525	chr9	116217663	116217769	+	8.35983	NA	intron (NM_144488, intron 1 of 25)	intron (NM_144488, intron 1 of 25)	-8264	NM_017790	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_89269	chr6	119097911	119098241	+	8.35983	NA	Intergenic	MIRc|SINE|MIR	-5795	NR_037662	100287632	Hs.334026	NR_037662		LOC100287632	-	selenoprotein K pseudogene	pseudo
19-PTNLD28-TUMOR_peak_3335	chr1	48168987	48169254	+	8.35983	NA	Intergenic	Intergenic	267431	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_44691	chr18	12979218	12979317	+	8.35983	NA	intron (NM_001013437, intron 6 of 8)	SVA_D|Other|Other	-12094	NM_032142	55125	Hs.100914	NM_018069	HPRD:10855	CEP192	PPP1R62	centrosomal protein 192kDa	protein-coding
19-PTNLD28-TUMOR_peak_84723	chr6	1424644	1424807	+	8.35983	NA	Intergenic	Intergenic	-34079	NR_106778	102466720		NR_106778		MIR6720	hsa-mir-6720	microRNA 6720	ncRNA
19-PTNLD28-TUMOR_peak_57887	chr2	203583446	203583578	+	8.35983	NA	intron (NM_173511, intron 2 of 7)	intron (NM_173511, intron 2 of 7)	83611	NM_173511	150864	Hs.471130	NM_173511	HPRD:12445	FAM117B	ALS2CR13	family with sequence similarity 117, member B	protein-coding
19-PTNLD28-TUMOR_peak_48417	chr19	30157023	30157372	+	8.35679	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	870	NM_024310	79156	Hs.466383	NM_024310	HPRD:15146	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_106780	chr9	139736838	139736960	+	8.35679	NA	Intergenic	Intergenic	-1968	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding
19-PTNLD28-TUMOR_peak_39921	chr17	6558186	6558355	+	8.35611	NA	promoter-TSS (NR_039874)	promoter-TSS (NR_039874)	-498	NR_039874	100616466		NR_039874		MIR4520-2	MIR4520B	microRNA 4520-2	ncRNA
19-PTNLD28-TUMOR_peak_52398	chr2	43328437	43328669	+	8.35036	NA	Intergenic	Intergenic	-61871	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_39184	chr16	85450032	85450213	+	8.35036	NA	Intergenic	Intergenic	-110191	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_38555	chr16	70557318	70557508	+	8.35036	NA	promoter-TSS (NM_012426)	promoter-TSS (NM_012426)	44	NM_015386	25839	Hs.208680	NM_015386	HPRD:08444	COG4	CDG2J|COD1	component of oligomeric golgi complex 4	protein-coding
19-PTNLD28-TUMOR_peak_24967	chr12	64477096	64477271	+	8.35036	NA	intron (NM_020762, intron 10 of 21)	intron (NM_020762, intron 10 of 21)	138893	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_1818	chr1	28184674	28184798	+	8.35036	NA	Intergenic	Intergenic	-14318	NM_004848	9473	Hs.10649	NM_004848	HPRD:12728	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
19-PTNLD28-TUMOR_peak_101523	chr8	143274506	143274668	+	8.35036	NA	Intergenic	Intergenic	-5130	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
19-PTNLD28-TUMOR_peak_20532	chr11	89955834	89955956	+	8.35036	NA	intron (NM_001144073, intron 1 of 9)	CpG	637	NM_012124	26973	Hs.22857	NM_012124		CHORDC1	CHP1	cysteine and histidine-rich domain (CHORD) containing 1	protein-coding
19-PTNLD28-TUMOR_peak_6340	chr1	145726589	145726810	+	8.34912	NA	promoter-TSS (NM_001201325)	promoter-TSS (NM_001201325)	-967	NM_001201325	5174	Hs.444751	NM_002614	HPRD:04829	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_21477	chr11	118039571	118039708	+	8.34877	NA	intron (NM_004588, intron 1 of 3)	AluJr|SINE|Alu	7698	NM_004588	6327	Hs.129783	NM_004588	HPRD:03208	SCN2B	ATFB14	sodium channel, voltage-gated, type II, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_87265	chr6	38689933	38690167	+	8.34877	NA	intron (NM_001206927, intron 1 of 92)	intron (NM_001206927, intron 1 of 92)	6933	NM_001206927	1769	Hs.520106	NM_001371	HPRD:04515	DNAH8	ATPase|hdhc9	dynein, axonemal, heavy chain 8	protein-coding
19-PTNLD28-TUMOR_peak_64486	chr22	21138696	21138795	+	8.34877	NA	intron (NM_000185, intron 3 of 4)	intron (NM_000185, intron 3 of 4)	10362	NM_000185	3053	Hs.474270	NM_000185	HPRD:00795	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin peptidase inhibitor, clade D (heparin cofactor), member 1	protein-coding
19-PTNLD28-TUMOR_peak_67012	chr3	17821930	17822116	+	8.34877	NA	Intergenic	HERV9-int|LTR|ERV1	-39624	NM_014744	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_17085	chr11	10401485	10401641	+	8.34877	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-70305	NM_001172431	272	Hs.501890	NM_000480	HPRD:00041	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_11717	chr10	3584674	3584822	+	8.34877	NA	Intergenic	Intergenic	242725	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_102627	chr9	32149104	32149199	+	8.34877	NA	Intergenic	L1PA3|LINE|L1	-235450	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_317	chr1	4458217	4458381	+	8.34877	NA	Intergenic	Intergenic	-13812	NR_027088	284661	Hs.278112	NR_027088	ENSG00000235054	LOC284661	-	uncharacterized LOC284661	ncRNA
19-PTNLD28-TUMOR_peak_91337	chr7	15172995	15173151	+	8.34877	NA	Intergenic	L2|LINE|L2	-291998	NM_004080	1607	Hs.567255	NM_004080	HPRD:06819	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase, beta 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_14674	chr10	86039828	86040024	+	8.34877	NA	intron (NR_038220, intron 1 of 5)	L1PA2|LINE|L1	190	NR_038220	170425	Hs.434131	NR_038220	ENSG00000229404	LINC00858	-	long intergenic non-protein coding RNA 858	ncRNA
19-PTNLD28-TUMOR_peak_45210	chr18	33106641	33107019	+	8.34877	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-28875	NM_194281	125476	Hs.464903	NM_194281	HPRD:10719	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
19-PTNLD28-TUMOR_peak_32201	chr14	103698723	103698918	+	8.34877	NA	Intergenic	Intergenic	-43455	NR_033938	100131366	Hs.147881	NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
19-PTNLD28-TUMOR_peak_52643	chr2	47402843	47403247	+	8.34877	NA	intron (NM_001743, intron 1 of 5)	CpG	695	NM_001743	805	Hs.468442	NM_001743	HPRD:00242	CALM2	CAMII|PHKD|PHKD2	calmodulin 2 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_51526	chr2	23500882	23500989	+	8.34877	NA	Intergenic	Intergenic	-107363	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_22485	chr12	2659745	2659902	+	8.34877	NA	intron (NM_001129832, intron 10 of 47)	intron (NM_001129832, intron 10 of 47)	121563	NR_046579	100874235	Hs.667644	NR_046579		CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_35487	chr15	100913015	100913349	+	8.34877	NA	promoter-TSS (NR_120374)	promoter-TSS (NR_120374)	38	NR_120374	102723320	Hs.416099	NR_120374		LOC102723320	-	uncharacterized LOC102723320	ncRNA
19-PTNLD28-TUMOR_peak_21243	chr11	113403539	113403656	+	8.34877	NA	Intergenic	Intergenic	-57596	NM_000795	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_53620	chr2	75750704	75750997	+	8.34877	NA	promoter-TSS (NR_110281)	promoter-TSS (NR_110281)	-344	NR_110281	101927884	Hs.671110	NR_110281	ENSG00000231172	LOC101927884	-	uncharacterized LOC101927884	ncRNA
19-PTNLD28-TUMOR_peak_87313	chr6	39412513	39412772	+	8.34877	NA	intron (NM_001289021, intron 12 of 21)	intron (NM_001289021, intron 12 of 21)	-13492	NM_001289024	221458	Hs.588202	NM_145027	HPRD:10786	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
19-PTNLD28-TUMOR_peak_7682	chr1	161404341	161404430	+	8.34877	NA	Intergenic	LTR5A|LTR|ERVK	-66712	NM_001013625	257177	Hs.534593	NM_001013625	HPRD:13257	C1orf192	Flattop|Fltp	chromosome 1 open reading frame 192	protein-coding
19-PTNLD28-TUMOR_peak_37882	chr16	54076444	54076562	+	8.34877	NA	intron (NM_001080432, intron 8 of 8)	L1HS|LINE|L1	3198	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23541	chr12	27780096	27780354	+	8.34877	NA	intron (NM_001198915, intron 2 of 26)	intron (NM_001198915, intron 2 of 26)	-69203	NM_001029874	387849	Hs.269836	NM_001029874	ENSG00000174236	REP15	RAB15EP	RAB15 effector protein	protein-coding
19-PTNLD28-TUMOR_peak_5021	chr1	95028474	95028681	+	8.34877	NA	Intergenic	Intergenic	-21164	NM_001993	2152	Hs.62192	NM_001993	HPRD:00603	F3	CD142|TF|TFA	coagulation factor III (thromboplastin, tissue factor)	protein-coding
19-PTNLD28-TUMOR_peak_34016	chr15	65532336	65532597	+	8.34877	NA	Intergenic	AluJb|SINE|Alu	-28626	NM_003613	8483	Hs.442180	NM_003613	HPRD:11942	CILP	CILP-1|HsT18872	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	protein-coding
19-PTNLD28-TUMOR_peak_8830	chr1	184618688	184618899	+	8.34877	NA	Intergenic	Intergenic	105248	NM_025191	80267	Hs.523811	NM_025191	HPRD:10724	EDEM3	C1orf22	ER degradation enhancer, mannosidase alpha-like 3	protein-coding
19-PTNLD28-TUMOR_peak_108032	chrX	41243424	41243737	+	8.34877	NA	Intergenic	Intergenic	50929	NM_001193416	1654	Hs.743263	NM_001356	HPRD:02154	DDX3X	DBX|DDX14|DDX3|HLP2	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_39082	chr16	84357361	84357529	+	8.34877	NA	intron (NM_021197, intron 4 of 6)	AluSx|SINE|Alu	29133	NM_001282466	58189	Hs.36688	NM_021197	HPRD:05614	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
19-PTNLD28-TUMOR_peak_58968	chr2	235515615	235515886	+	8.34877	NA	Intergenic	Intergenic	-110053	NM_001282431	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_58963	chr2	235355182	235355336	+	8.34877	NA	Intergenic	Intergenic	50434	NM_005737	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_70199	chr3	122863451	122863555	+	8.34877	NA	intron (NM_006810, intron 11 of 16)	AluY|SINE|Alu	-17138	NR_106960	102465667		NR_106960		MIR7110	hsa-mir-7110	microRNA 7110	ncRNA
19-PTNLD28-TUMOR_peak_102937	chr9	36328938	36329044	+	8.34877	NA	Intergenic	Intergenic	-51938	NM_001190388	10020	Hs.5920	NM_005476	HPRD:04825	GNE	DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
19-PTNLD28-TUMOR_peak_20343	chr11	80671529	80671767	+	8.34877	NA	Intergenic	MER41B|LTR|ERV1	-197802	NR_120570	101928944	Hs.547927	NR_120570	ENSG00000255178	LOC101928944	-	uncharacterized LOC101928944	ncRNA
19-PTNLD28-TUMOR_peak_104263	chr9	88040100	88040372	+	8.34877	NA	Intergenic	Intergenic	316708	NM_001286715	23287	Hs.719980	NM_015239	HPRD:08442	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27381	chr13	21347904	21348225	+	8.34877	NA	promoter-TSS (NM_174928)	promoter-TSS (NM_174928)	-7	NM_174928	221143	Hs.26674	NM_174928	HPRD:14135	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_100536	chr8	124592120	124592282	+	8.34877	NA	Intergenic	Intergenic	-38708	NM_001242463	114907	Hs.403933	NM_058229	HPRD:05966	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
19-PTNLD28-TUMOR_peak_67659	chr3	40622199	40622321	+	8.34877	NA	Intergenic	Intergenic	55891	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_37930	chr16	55560556	55560658	+	8.34877	NA	intron (NM_017839, intron 2 of 13)	intron (NM_017839, intron 2 of 13)	17694	NM_017839	54947	Hs.460857	NM_017839	HPRD:07913	LPCAT2	AYTL1|LysoPAFAT	lysophosphatidylcholine acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_5678	chr1	114665705	114666001	+	8.34877	NA	intron (NM_001270805, intron 3 of 7)	intron (NM_001270805, intron 3 of 7)	29209	NM_205848	148281	Hs.370963	NM_205848	HPRD:09654	SYT6	sytVI	synaptotagmin VI	protein-coding
19-PTNLD28-TUMOR_peak_65721	chr22	42370825	42370992	+	8.34877	NA	Intergenic	Intergenic	-2023	NM_019106	55964	Hs.120483	NM_019106	HPRD:10515	SEPT3	SEP3|bK250D10.3	septin 3	protein-coding
19-PTNLD28-TUMOR_peak_52294	chr2	40341307	40341439	+	8.34877	NA	3' UTR (NM_021097, exon 10 of 10)	3' UTR (NM_021097, exon 10 of 10)	196599	NR_038441	100128590	Hs.744988	NR_038441	ENSG00000227028	SLC8A1-AS1	-	SLC8A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_67023	chr3	18166063	18166208	+	8.34877	NA	intron (NM_001257177, intron 4 of 4)	MLT1I|LTR|ERVL-MaLR	162071	NM_001257177	339862	Hs.652981	NM_001257177		LOC339862	-	uncharacterized LOC339862	protein-coding
19-PTNLD28-TUMOR_peak_70067	chr3	119901895	119901997	+	8.34877	NA	intron (NM_153002, intron 6 of 8)	Charlie13b|DNA|hAT-Charlie	61196	NM_001168271	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_44068	chr17	80190013	80190126	+	8.34410	NA	promoter-TSS (NM_001042423)	promoter-TSS (NM_001042423)	-39	NM_001042423	9123	Hs.500761	NM_004207	HPRD:04854	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 (monocarboxylate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_34557	chr15	75494803	75494935	+	8.34370	NA	intron (NM_015492, intron 1 of 2)	CpG	648	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_1984	chr1	31178639	31178754	+	8.34149	NA	Intergenic	LOR1a|LTR|ERV1	-12923	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64639	chr22	22990582	22990747	+	8.34149	NA	TTS (NM_001282879)	TTS (NM_001282879)	1882	NM_199127	91227	Hs.450000	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_57867	chr2	203102530	203102989	+	8.34052	NA	intron (NM_001005781, intron 1 of 5)	CpG	563	NM_001005782	7341	Hs.81424	NM_003352	HPRD:03554	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin-like modifier 1	protein-coding
19-PTNLD28-TUMOR_peak_101773	chr8	145704485	145704597	+	8.34052	NA	Intergenic	Intergenic	-2823	NM_003923	8928	Hs.708365	NM_003923	HPRD:04689	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
19-PTNLD28-TUMOR_peak_19257	chr11	65187506	65187635	+	8.33716	NA	Intergenic	Intergenic	-2699	NR_028272	283131	Hs.523789	NR_002802		NEAT1	LINC00084|NCRNA00084|TncRNA|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_46597	chr19	1592266	1592597	+	8.33475	NA	intron (NM_001281454, intron 1 of 6)	CpG	329	NM_001281454	53615	Hs.178728	NM_003926	HPRD:04653	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_100738	chr8	127396064	127396171	+	8.33475	NA	Intergenic	Intergenic	58377	NR_125421	101927657	Hs.552133	NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
19-PTNLD28-TUMOR_peak_58459	chr2	219860941	219861092	+	8.33475	NA	Intergenic	CpG	-2889	NM_057093	1412	Hs.415790	NM_057093	HPRD:02905	CRYBA2	CTRCT42	crystallin, beta A2	protein-coding
19-PTNLD28-TUMOR_peak_9948	chr1	211909141	211909327	+	8.33475	NA	Intergenic	MIRc|SINE|MIR	-60262	NM_001204182	4751	Hs.153704	NM_002497	HPRD:04953	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA-related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_5776	chr1	116519188	116519524	+	8.33475	NA	intron (NM_018420, intron 1 of 11)	CpG	237	NM_018420	55356	Hs.125482	NM_018420	ENSG00000163393	SLC22A15	FLIPT1|PRO34686	solute carrier family 22, member 15	protein-coding
19-PTNLD28-TUMOR_peak_28830	chr13	99858093	99858233	+	8.33475	NA	intron (NR_026644, intron 1 of 8)	7SK|RNA|RNA	5000	NM_177967	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_47427	chr19	12728612	12728705	+	8.33475	NA	intron (NM_153358, intron 1 of 3)	AluSc|SINE|Alu	6926	NM_153358	163049	Hs.720677	NM_153358	HPRD:08295	ZNF791	-	zinc finger protein 791	protein-coding
19-PTNLD28-TUMOR_peak_75964	chr4	82420016	82420186	+	8.33475	NA	Intergenic	Intergenic	-27019	NM_001300736	153020	Hs.591696	NM_152545	HPRD:17955	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_26718	chr12	121497840	121498080	+	8.33475	NA	Intergenic	Intergenic	-20915	NM_198213	8638	Hs.118633	NM_003733	HPRD:04473	OASL	OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase-like	protein-coding
19-PTNLD28-TUMOR_peak_86983	chr6	35108862	35109261	+	8.33475	NA	5' UTR (NM_001261821, exon 1 of 11)	5' UTR (NM_001261821, exon 1 of 11)	126	NM_001261818	6954	Hs.435371	NM_018679	HPRD:01749	TCP11	D6S230E|FPPR	t-complex 11, testis-specific	protein-coding
19-PTNLD28-TUMOR_peak_26992	chr12	125139656	125139836	+	8.33475	NA	Intergenic	MER102a|DNA|hAT-Charlie	-87736	NM_001206654	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_77216	chr4	140661485	140661609	+	8.33475	NA	3' UTR (NM_001204367, exon 5 of 5)	3' UTR (NM_001204367, exon 5 of 5)	74625	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_884	chr1	13207266	13207542	+	8.33475	NA	Intergenic	HERV3-int|LTR|ERV1	12886	NR_111945	645354		NR_111945		LOC645354	-	PRAME family member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_70289	chr3	123996528	123996645	+	8.33475	NA	intron (NM_001024660, intron 5 of 59)	intron (NM_001024660, intron 5 of 59)	-96593	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_67031	chr3	18372555	18372757	+	8.33475	NA	Intergenic	L1PA3|LINE|L1	94173	NM_002971	6304	Hs.517717	NM_002971	HPRD:03647	SATB1	-	SATB homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_12649	chr10	29649505	29649638	+	8.33391	NA	Intergenic	LTR2B|LTR|ERV1	-48892	NR_110923	102724316	Hs.499209	NR_003930		SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44881	chr18	20723871	20724201	+	8.33391	NA	intron (NM_001100619, intron 1 of 9)	intron (NM_001100619, intron 1 of 9)	8309	NM_001100619	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_74283	chr4	7906736	7906898	+	8.33391	NA	intron (NM_198595, intron 1 of 16)	intron (NM_198595, intron 1 of 16)	34836	NM_198595	60312	Hs.529369	NM_021638	HPRD:09747	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49790	chr19	49535031	49535152	+	8.33391	NA	promoter-TSS (NM_033378)	promoter-TSS (NM_033378)	-39	NM_033378	114336	Hs.567650	NM_033378	HPRD:12308	CGB2	-	chorionic gonadotropin, beta polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_21292	chr11	114150727	114150891	+	8.33391	NA	Intergenic	L2a|LINE|L2	-15726	NM_006169	4837	Hs.503911	NM_006169	HPRD:02478	NNMT	-	nicotinamide N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_52419	chr2	43500738	43501005	+	8.33391	NA	intron (NM_022065, intron 36 of 37)	intron (NM_022065, intron 36 of 37)	46521	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_3061	chr1	44465196	44465459	+	8.33015	NA	intron (NM_001261380, intron 11 of 12)	intron (NM_001261380, intron 11 of 12)	8047	NM_152499	149473	Hs.632394	NM_152499	HPRD:14636	CCDC24	-	coiled-coil domain containing 24	protein-coding
19-PTNLD28-TUMOR_peak_43383	chr17	73126912	73127024	+	8.33015	NA	TTS (NM_024585)	TTS (NM_024585)	922	NM_001252377	30833	Hs.67201	NM_014595	HPRD:11833	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
19-PTNLD28-TUMOR_peak_67776	chr3	43807054	43807148	+	8.33015	NA	Intergenic	Intergenic	74726	NM_016006	51099	Hs.19385	NM_016006		ABHD5	CDS|CGI58|IECN2|NCIE2	abhydrolase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_79302	chr5	31531790	31531919	+	8.33015	NA	promoter-TSS (NM_018356)	promoter-TSS (NM_018356)	428	NM_013235	29102	Hs.97997	NM_013235	HPRD:10196	DROSHA	ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN	drosha, ribonuclease type III	protein-coding
19-PTNLD28-TUMOR_peak_3104	chr1	45075280	45075407	+	8.32901	NA	intron (NM_018150, intron 2 of 14)	intron (NM_018150, intron 2 of 14)	64178	NR_049849	100847089		NR_049849		MIR5584	-	microRNA 5584	ncRNA
19-PTNLD28-TUMOR_peak_3901	chr1	60896127	60896308	+	8.32901	NA	Intergenic	MER4D|LTR|ERV1	-356775	NM_152377	127795	Hs.47385	NM_152377	HPRD:11338	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_36750	chr16	21780701	21780936	+	8.32901	NA	Intergenic	Intergenic	49677	NR_003370	730092	Hs.31290	NR_003370		RRN3P1	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_65019	chr22	30129545	30129675	+	8.32901	NA	intron (NM_001003692, intron 5 of 5)	intron (NM_001003692, intron 5 of 5)	13266	NM_182527	164633	Hs.643608	NM_182527	HPRD:12995	CABP7	CALN2	calcium binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_44042	chr17	79964434	79964592	+	8.32809	NA	intron (NR_045351, intron 6 of 14)	intron (NR_045351, intron 6 of 14)	16272	NM_144998	201254	Hs.37616	NM_144998	HPRD:18121	STRA13	CENP-X|CENPX|D9|FAAP10|MHF2	stimulated by retinoic acid 13	protein-coding
19-PTNLD28-TUMOR_peak_68899	chr3	69133940	69134176	+	8.32415	NA	promoter-TSS (NM_006407)	promoter-TSS (NM_006407)	-32	NM_006407	10550	Hs.518060	NM_006407	HPRD:09303	ARL6IP5	DERP11|GTRAP3-18|JWA|PRAF3|addicsin|hp22|jmx	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding
19-PTNLD28-TUMOR_peak_41563	chr17	40831826	40831988	+	8.32415	NA	exon (NM_016602, exon 2 of 2)	exon (NM_016602, exon 2 of 2)	1938	NM_016602	2826	Hs.744542	NM_016602		CCR10	GPR2	chemokine (C-C motif) receptor 10	protein-coding
19-PTNLD28-TUMOR_peak_102872	chr9	35727086	35727175	+	8.32415	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	-5187	NM_006368	10488	Hs.522110	NM_006368	ENSG00000107175	CREB3	LUMAN|LZIP	cAMP responsive element binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_73760	chr4	677847	677980	+	8.32090	NA	intron (NM_032219, intron 6 of 9)	intron (NM_032219, intron 6 of 9)	5317	NM_001294341	84179	Hs.567612	NM_032219	HPRD:08650	MFSD7	-	major facilitator superfamily domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_12797	chr10	32044124	32044238	+	8.31809	NA	Intergenic	Intergenic	153673	NM_001270699	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_39875	chr17	5322308	5322540	+	8.31809	NA	promoter-TSS (NM_001160266)	promoter-TSS (NM_001160266)	-537	NM_001160266	84268	Hs.462086	NM_032308	HPRD:14615	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_60906	chr20	36498038	36498312	+	8.31809	NA	intron (NM_001281495, intron 16 of 16)	intron (NM_001281495, intron 16 of 16)	-33324	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_41284	chr17	37310419	37310827	+	8.31744	NA	Intergenic	Intergenic	-2721	NM_020405	57125	Hs.125036	NM_020405	HPRD:08439	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_2161	chr1	33207997	33208179	+	8.31744	NA	intron (NM_020888, intron 1 of 6)	intron (NM_020888, intron 1 of 6)	576	NM_020888	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
19-PTNLD28-TUMOR_peak_73738	chr4	569139	569296	+	8.31590	NA	Intergenic	CpG	-50146	NM_000283	5158	Hs.623810	NM_000283	HPRD:01571	PDE6B	CSNB3|CSNBAD2|PDEB|RP40|rd1	phosphodiesterase 6B, cGMP-specific, rod, beta	protein-coding
19-PTNLD28-TUMOR_peak_13639	chr10	53149783	53150093	+	8.31590	NA	intron (NM_006258, intron 2 of 17)	intron (NM_006258, intron 2 of 17)	90605	NR_030336	693190		NR_030336		MIR605	MIRN605|hsa-mir-605	microRNA 605	ncRNA
19-PTNLD28-TUMOR_peak_15035	chr10	97578561	97578707	+	8.31590	NA	intron (NR_038444, intron 4 of 5)	intron (NR_038444, intron 4 of 5)	62961	NM_001164182	953	Hs.576612	NM_001776	HPRD:09047	ENTPD1	ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_963	chr1	15296793	15296967	+	8.31590	NA	intron (NM_001017999, intron 2 of 7)	intron (NM_001017999, intron 2 of 7)	24465	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_15042	chr10	97804074	97804302	+	8.31590	NA	exon (NM_001134376, exon 2 of 6)	exon (NM_001134376, exon 2 of 6)	1029	NM_019084	54619	Hs.596479	NM_019084	HPRD:07710	CCNJ	bA690P14.1	cyclin J	protein-coding
19-PTNLD28-TUMOR_peak_27384	chr13	21477226	21477357	+	8.31590	NA	promoter-TSS (NM_022459)	promoter-TSS (NM_022459)	-378	NM_022459	64328	Hs.507452	NM_022459	HPRD:18307	XPO4	exp4	exportin 4	protein-coding
19-PTNLD28-TUMOR_peak_59776	chr20	10302851	10303029	+	8.31578	NA	Intergenic	Intergenic	-102786	NR_040710	100131208	Hs.658178	NR_040710	ENSG00000227906	SNAP25-AS1	-	SNAP25 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51102	chr2	10881371	10881571	+	8.31578	NA	intron (NM_001039362, intron 3 of 13)	intron (NM_001039362, intron 3 of 13)	19696	NM_144583	245973	Hs.580464	NM_144583	HPRD:16523	ATP6V1C2	ATP6C2|VMA5	ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2	protein-coding
19-PTNLD28-TUMOR_peak_108173	chrX	47171901	47172090	+	8.31578	NA	Intergenic	HERVL40-int|LTR|ERVL	-58004	NM_003446	7712	Hs.89897	NM_003446		ZNF157	HZF22	zinc finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_71334	chr3	141079824	141080003	+	8.31578	NA	intron (NM_001080412, intron 1 of 7)	intron (NM_001080412, intron 1 of 7)	36858	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
19-PTNLD28-TUMOR_peak_29726	chr14	31713234	31713474	+	8.31578	NA	Intergenic	LTR10F|LTR|ERV1	-36625	NM_015382	25831	Hs.708017	NM_015382	HPRD:17098	HECTD1	EULIR	HECT domain containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_62408	chr20	58004039	58004133	+	8.31578	NA	Intergenic	Intergenic	128587	NM_207032	1908	Hs.1408	NM_000114	HPRD:00570	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
19-PTNLD28-TUMOR_peak_91682	chr7	25148958	25149159	+	8.31578	NA	Intergenic	THE1B|LTR|ERVL-MaLR	15922	NM_018947	54205	Hs.437060	NM_018947		CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
19-PTNLD28-TUMOR_peak_107584	chrX	13446544	13446793	+	8.31578	NA	Intergenic	Intergenic	93308	NR_045260	100133123	Hs.449499	NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
19-PTNLD28-TUMOR_peak_85657	chr6	16497625	16497997	+	8.31578	NA	intron (NM_001128164, intron 5 of 7)	intron (NM_001128164, intron 5 of 7)	259000	NM_006877	2766	Hs.484741	NM_006877	HPRD:00754	GMPR	GMPR1	guanosine monophosphate reductase	protein-coding
19-PTNLD28-TUMOR_peak_65555	chr22	39548831	39549006	+	8.31578	NA	promoter-TSS (NM_175709)	promoter-TSS (NM_175709)	-380	NM_175709	23492	Hs.356416	NM_175709	HPRD:12234	CBX7	-	chromobox homolog 7	protein-coding
19-PTNLD28-TUMOR_peak_90479	chr6	166755893	166756226	+	8.31578	NA	promoter-TSS (NM_145169)	promoter-TSS (NM_145169)	-60	NR_040022	100289495		NR_040022		LOC100289495	-	uncharacterized LOC100289495	ncRNA
19-PTNLD28-TUMOR_peak_76847	chr4	122177681	122177801	+	8.31578	NA	Intergenic	Intergenic	-29120	NM_001244764	79931	Hs.208206	NM_024873	HPRD:16268	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_55711	chr2	131314808	131315139	+	8.31578	NA	Intergenic	Intergenic	-7485	NR_033930	646743	Hs.634887	NR_033930		LOC646743	-	uncharacterized LOC646743	pseudo
19-PTNLD28-TUMOR_peak_29766	chr14	32694331	32694434	+	8.31578	NA	Intergenic	Intergenic	-21907	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_19041	chr11	62631571	62631754	+	8.31578	NA	intron (NM_001012664, intron 1 of 9)	ERV3-16A3_I-int|LTR|ERVL	8178	NM_002394	6520	Hs.502769	NM_002394	HPRD:01148	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 (amino acid transporter heavy chain), member 2	protein-coding
19-PTNLD28-TUMOR_peak_3864	chr1	59900123	59900267	+	8.31578	NA	intron (NM_001113411, intron 5 of 16)	intron (NM_001113411, intron 5 of 16)	-81106	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_38267	chr16	66945079	66945249	+	8.31578	NA	exon (NM_001204744, exon 14 of 18)	exon (NM_001204744, exon 14 of 18)	7723	NM_001204744	1014	Hs.513660	NM_004062	HPRD:11929	CDH16	-	cadherin 16, KSP-cadherin	protein-coding
19-PTNLD28-TUMOR_peak_80022	chr5	56594095	56594261	+	8.31578	NA	Intergenic	Intergenic	84277	NM_001127236	65056	Hs.444279	NM_022913	HPRD:16333	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54994	chr2	112813882	112814022	+	8.31420	NA	intron (NM_032824, intron 1 of 18)	intron (NM_032824, intron 1 of 18)	1152	NM_032824	84910	Hs.656298	NM_032824	HPRD:07867	TMEM87B	-	transmembrane protein 87B	protein-coding
19-PTNLD28-TUMOR_peak_87649	chr6	44013521	44013629	+	8.31420	NA	Intergenic	Intergenic	45238	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_60618	chr20	32582206	32582412	+	8.31420	NA	promoter-TSS (NR_109886)	promoter-TSS (NR_109886)	-136	NR_109885	101926888	Hs.405849	NR_109885	ENSG00000228265	RALY-AS1	-	RALY antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_7259	chr1	156023489	156023594	+	8.31067	NA	promoter-TSS (NM_020131)	promoter-TSS (NM_020131)	-25	NM_020131	56893	Hs.283739	NM_020131	HPRD:05670	UBQLN4	A1U|A1Up|C1orf6|CIP75|UBIN	ubiquilin 4	protein-coding
19-PTNLD28-TUMOR_peak_37329	chr16	31146048	31146154	+	8.30765	NA	intron (NM_002773, intron 2 of 5)	AluJb|SINE|Alu	1050	NM_002773	5652	Hs.75799	NM_002773	HPRD:02895	PRSS8	CAP1|PROSTASIN	protease, serine, 8	protein-coding
19-PTNLD28-TUMOR_peak_85847	chr6	20538906	20539220	+	8.30718	NA	intron (NM_017774, intron 2 of 15)	intron (NM_017774, intron 2 of 15)	4375	NM_017774	54901	Hs.657604	NM_017774	HPRD:13022	CDKAL1	-	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_99640	chr8	98787798	98788127	+	8.30562	NA	5' UTR (NM_018407, exon 1 of 7)	5' UTR (NM_018407, exon 1 of 7)	153	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
19-PTNLD28-TUMOR_peak_64353	chr22	19711716	19711989	+	8.30562	NA	non-coding (NR_037611, exon 12 of 12)	non-coding (NR_037611, exon 12 of 12)	786	NM_000407	2812	Hs.283743	NM_000407		GP1BB	BDPLT1|BS|CD42C|GPIBB	glycoprotein Ib (platelet), beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_13329	chr10	46504206	46504353	+	8.30562	NA	Intergenic	Intergenic	115779	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_2135	chr1	32827324	32827974	+	8.30562	NA	promoter-TSS (NM_052841)	promoter-TSS (NM_052841)	195	NM_001167676	100128071	Hs.660539	NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229, member A	protein-coding
19-PTNLD28-TUMOR_peak_31360	chr14	76182417	76182571	+	8.30562	NA	intron (NM_015072, intron 9 of 31)	intron (NM_015072, intron 9 of 31)	54943	NM_015072	23093	Hs.709609	NM_015072	HPRD:08309	TTLL5	CORD19|KIAA0998|STAMP	tubulin tyrosine ligase-like family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_15325	chr10	103990271	103990492	+	8.30562	NA	exon (NM_005029, exon 4 of 4)	exon (NM_005029, exon 4 of 4)	4346	NM_152310	83401	Hs.302130	NM_152310	HPRD:16858	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
19-PTNLD28-TUMOR_peak_40605	chr17	20109434	20109633	+	8.30562	NA	intron (NM_001033554, intron 2 of 5)	L2c|LINE|L2	50226	NM_001033555	92521	Hs.431045	NM_152904	HPRD:12301	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
19-PTNLD28-TUMOR_peak_67328	chr3	29800222	29800667	+	8.30562	NA	intron (NM_001003792, intron 5 of 13)	intron (NM_001003792, intron 5 of 13)	175203	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61048	chr20	38611948	38612087	+	8.30562	NA	Intergenic	Intergenic	-21086	NR_109936	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_62461	chr20	60696469	60696673	+	8.30464	NA	promoter-TSS (NM_144703)	promoter-TSS (NM_144703)	-946	NM_144703	149986	Hs.105379	NM_144703	HPRD:12768	LSM14B	C20orf40|FAM61B|LSM13|RAP55B|bA11M20.3	LSM14B, SCD6 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_82622	chr5	139704449	139704584	+	8.30464	NA	Intergenic	Intergenic	21672	NM_001945	1839	Hs.799	NM_001945	HPRD:00526	HBEGF	DTR|DTS|DTSF|HEGFL	heparin-binding EGF-like growth factor	protein-coding
19-PTNLD28-TUMOR_peak_7963	chr1	167076757	167076980	+	8.30464	NA	intron (NM_001080426, intron 1 of 4)	intron (NM_001080426, intron 1 of 4)	12781	NM_001080426	92235	Hs.632462	NM_001080426	ENSG00000198842	DUSP27	-	dual specificity phosphatase 27 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_78613	chr5	784959	785228	+	8.30464	NA	Intergenic	CpG	66008	NM_024786	79844	Hs.732788	NM_024786	HPRD:15708	ZDHHC11	ZNF399	zinc finger, DHHC-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_9232	chr1	201465227	201465370	+	8.30464	NA	intron (NM_001193570, intron 2 of 5)	intron (NM_001193570, intron 2 of 5)	403	NM_001193572	1465	Hs.108080	NM_004078	HPRD:00470	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141	cysteine and glycine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_18351	chr11	45825496	45826034	+	8.30464	NA	promoter-TSS (NM_018389)	promoter-TSS (NM_018389)	142	NM_001145266	55343	Hs.12211	NM_018389	HPRD:09324	SLC35C1	CDG2C|FUCT1	solute carrier family 35 (GDP-fucose transporter), member C1	protein-coding
19-PTNLD28-TUMOR_peak_7592	chr1	160226570	160226689	+	8.30430	NA	intron (NR_028104, intron 1 of 12)	intron (NR_028104, intron 1 of 12)	5648	NR_028106	50717	Hs.632447	NM_015726	HPRD:18300	DCAF8	GAN2|H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
19-PTNLD28-TUMOR_peak_17242	chr11	12565251	12565389	+	8.30430	NA	Intergenic	Intergenic	-130649	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_38037	chr16	57406213	57406303	+	8.30430	NA	promoter-TSS (NM_002996)	promoter-TSS (NM_002996)	-156	NM_002996	6376	Hs.531668	NM_002996	HPRD:03529	CX3CL1	ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin	chemokine (C-X3-C motif) ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_60289	chr20	25057034	25057145	+	8.30430	NA	exon (NM_014588, exon 5 of 5)	exon (NM_014588, exon 5 of 5)	5926	NM_001256272	30813	Hs.274264	NM_014588	HPRD:09232	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_3496	chr1	52498429	52498666	+	8.30430	NA	non-coding (NR_046406, exon 3 of 3)	non-coding (NR_046406, exon 3 of 3)	925	NM_138417	112970	Hs.476033	NM_138417	HPRD:14471	KTI12	SBBI81|TOT4	KTI12 homolog, chromatin associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_19921	chr11	72953725	72953870	+	8.30430	NA	TTS (NM_176072)	TTS (NM_176072)	-21753	NM_001277205	5031	Hs.16362	NM_004154	HPRD:03906	P2RY6	P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding
19-PTNLD28-TUMOR_peak_36297	chr16	11460510	11460664	+	8.30430	NA	Intergenic	L1MEf|LINE|L1	21276	NM_152308	116028	Hs.347524	NM_152308	HPRD:14497	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19-PTNLD28-TUMOR_peak_26009	chr12	106329018	106329207	+	8.30430	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	204699	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_7694	chr1	161432062	161432264	+	8.29866	NA	Intergenic	CpG	-43042	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_7125	chr1	154916375	154916481	+	8.29785	NA	TTS (NM_020524)	TTS (NM_020524)	-6944	NM_006556	10654	Hs.30954	NM_006556	HPRD:07404	PMVK	HUMPMKI|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding
19-PTNLD28-TUMOR_peak_93349	chr7	74373105	74373372	+	8.29785	NA	Intergenic	LTR32|LTR|ERVL	66351	NR_027776	5383	Hs.292996	NM_174930	HPRD:17867	PMS2P5	PMS2L5|PMS7	postmeiotic segregation increased 2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_81997	chr5	127612362	127612518	+	8.29785	NA	intron (NM_001999, intron 58 of 64)	LTR33|LTR|ERVL	192957	NR_046207	6558	Hs.162585	NM_001046	HPRD:06775	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_39442	chr16	89368184	89368299	+	8.29785	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	-19300	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
19-PTNLD28-TUMOR_peak_49756	chr19	49284384	49284574	+	8.29785	NA	Intergenic	LTR13A|LTR|ERVK	25135	NM_019113	26291	Hs.283015	NM_019113	HPRD:09447	FGF21	-	fibroblast growth factor 21	protein-coding
19-PTNLD28-TUMOR_peak_88751	chr6	90713206	90713366	+	8.29785	NA	intron (NM_021813, intron 6 of 8)	L2a|LINE|L2	109098	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_19898	chr11	72533518	72533749	+	8.29785	NA	intron (NM_033388, intron 6 of 17)	CpG-4560	8182	NM_033388	89849	Hs.653186	NM_033388	HPRD:10959	ATG16L2	ATG16B|WDR80	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_63093	chr21	31312227	31312358	+	8.29776	NA	promoter-TSS (NM_000830)	promoter-TSS (NM_000830)	-10	NM_175611	2897	Hs.664641	NM_000830	HPRD:00693	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1	glutamate receptor, ionotropic, kainate 1	protein-coding
19-PTNLD28-TUMOR_peak_10193	chr1	221794185	221794781	+	8.29776	NA	Intergenic	Intergenic	115759	NR_111939	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_3783	chr1	58340248	58340487	+	8.29776	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	14152	NR_104364	101926890	Hs.662207	NR_104362		DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52367	chr2	43070859	43070978	+	8.29776	NA	Intergenic	Intergenic	-51167	NM_012205	23498	Hs.368805	NM_012205	HPRD:05158	HAAO	3-HAO|HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
19-PTNLD28-TUMOR_peak_14214	chr10	73264211	73264399	+	8.29776	NA	intron (NM_001171930, intron 3 of 30)	L1MB2|LINE|L1	7372	NR_120672	102723377	Hs.568789	NR_120672		LOC102723377	-	uncharacterized LOC102723377	ncRNA
19-PTNLD28-TUMOR_peak_20587	chr11	93148143	93148274	+	8.29776	NA	exon (NM_181645, exon 13 of 14)	exon (NM_181645, exon 13 of 14)	84325	NM_181645	159989	Hs.436625	NM_181645	HPRD:08689	CCDC67	-	coiled-coil domain containing 67	protein-coding
19-PTNLD28-TUMOR_peak_52975	chr2	61897781	61897895	+	8.29776	NA	Intergenic	Intergenic	-132420	NM_003400	7514	Hs.370770	NM_003400	HPRD:03975	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
19-PTNLD28-TUMOR_peak_99960	chr8	105757845	105758079	+	8.29776	NA	Intergenic	L1HS|LINE|L1	-156710	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_85690	chr6	17046103	17046420	+	8.29776	NA	Intergenic	Intergenic	-56228	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_15664	chr10	113822677	113822772	+	8.29776	NA	Intergenic	L1PA2|LINE|L1	120813	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_23606	chr12	30949146	30949351	+	8.29776	NA	intron (NR_040245, intron 1 of 4)	CpG	633	NR_040245	100287314	Hs.355210	NR_040245	ENSG00000235884	LINC00941	-	long intergenic non-protein coding RNA 941	ncRNA
19-PTNLD28-TUMOR_peak_98309	chr8	38831937	38832066	+	8.29776	NA	TTS (NM_021623)	TTS (NM_021623)	333	NM_153692	203100	Hs.661014	NM_153692	HPRD:08818	HTRA4	-	HtrA serine peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_100584	chr8	125249388	125249616	+	8.29776	NA	intron (NR_125420, intron 1 of 2)	intron (NR_125420, intron 1 of 2)	10137	NR_125420	101927588	Hs.617072	NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
19-PTNLD28-TUMOR_peak_38021	chr16	57235725	57235829	+	8.29776	NA	intron (NM_133368, intron 1 of 14)	SVA_D|Other|Other	15536	NM_133368	89970	Hs.460885	NM_133368	HPRD:13908	RSPRY1	-	ring finger and SPRY domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76600	chr4	111171286	111171375	+	8.29776	NA	Intergenic	Intergenic	-51510	NM_024090	79071	Hs.412939	NM_024090	HPRD:13269	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
19-PTNLD28-TUMOR_peak_19637	chr11	68961195	68961330	+	8.29776	NA	Intergenic	Intergenic	-22232	NR_104161	338694	Hs.564235	NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
19-PTNLD28-TUMOR_peak_51901	chr2	29648984	29649081	+	8.29776	NA	intron (NM_004304, intron 4 of 28)	L1M4b|LINE|L1	310740	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_75047	chr4	40553038	40553166	+	8.29776	NA	intron (NM_001098634, intron 1 of 6)	intron (NM_001098634, intron 1 of 6)	-35112	NM_019027	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
19-PTNLD28-TUMOR_peak_61643	chr20	47749594	47749699	+	8.29776	NA	intron (NM_001037328, intron 6 of 13)	intron (NM_001037328, intron 6 of 13)	55258	NM_017453	6780	Hs.596704	NM_004602	HPRD:03422	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_20528	chr11	89786236	89786333	+	8.29776	NA	Intergenic	MER5A|DNA|hAT-Charlie	22010	NM_001195234	642612	Hs.740080	NM_001195234	ENSG00000204449	TRIM49C	TRIM49L2	tripartite motif containing 49C	protein-coding
19-PTNLD28-TUMOR_peak_88347	chr6	74381767	74381908	+	8.29776	NA	Intergenic	Intergenic	-18100	NM_012434	26503	Hs.597422	NM_012434	HPRD:05058	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (acidic sugar transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_33418	chr15	45329397	45329499	+	8.29776	NA	intron (NR_034039, intron 1 of 8)	intron (NR_034039, intron 1 of 8)	14146	NR_034039	6652	Hs.878	NM_003104		SORD	HEL-S-95n|SORD1	sorbitol dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_89028	chr6	109159409	109159828	+	8.29776	NA	Intergenic	Intergenic	-10001	NM_001286609	84071	Hs.645481	NM_032131	HPRD:09809	ARMC2	bA787I22.1	armadillo repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_26578	chr12	118558722	118558888	+	8.29776	NA	Intergenic	Intergenic	-15065	NM_002567	5037	Hs.433863	NM_002567	HPRD:06850	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42723	chr17	58964523	58964620	+	8.29776	NA	intron (NM_017679, intron 9 of 23)	L1PA2|LINE|L1	209399	NM_001099432	54828	Hs.655028	NM_017679	HPRD:06313	BCAS3	GAOB1|MAAB	breast carcinoma amplified sequence 3	protein-coding
19-PTNLD28-TUMOR_peak_42589	chr17	56461331	56461439	+	8.29776	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	-31786	NR_073470	6827	Hs.439481	NM_003168	HPRD:16026	SUPT4H1	SPT4|SPT4H|SUPT4H	suppressor of Ty 4 homolog 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_59504	chr20	2363633	2363888	+	8.29776	NA	intron (NM_198994, intron 1 of 12)	intron (NM_198994, intron 1 of 12)	2206	NM_001254734	343641	Hs.452039	NM_198994	HPRD:15495	TGM6	SCA35|TG6|TGM3L|TGY|dJ734P14.3	transglutaminase 6	protein-coding
19-PTNLD28-TUMOR_peak_38492	chr16	69520685	69520860	+	8.29776	NA	Intergenic	Intergenic	62274	NM_030579	80777	Hs.461131	NM_030579	HPRD:13106	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B (outer mitochondrial membrane)	protein-coding
19-PTNLD28-TUMOR_peak_57954	chr2	205179987	205180383	+	8.29776	NA	Intergenic	Intergenic	-230331	NM_152526	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_8553	chr1	180157445	180157555	+	8.29776	NA	intron (NM_001004128, intron 8 of 12)	intron (NM_001004128, intron 8 of 12)	-9644	NR_026900	200058	Hs.719176	NR_026900		FLJ23867	-	uncharacterized protein FLJ23867	ncRNA
19-PTNLD28-TUMOR_peak_5930	chr1	119374517	119374653	+	8.29776	NA	Intergenic	L1PA3|LINE|L1	157594	NM_152380	6913	Hs.146196	NM_152380	HPRD:16035	TBX15	TBX14	T-box 15	protein-coding
19-PTNLD28-TUMOR_peak_57059	chr2	175274966	175275175	+	8.29776	NA	intron (NM_024583, intron 5 of 7)	L1PA2|LINE|L1	14613	NM_024583	79634	Hs.470679	NM_024583	HPRD:18028	SCRN3	SES3	secernin 3	protein-coding
19-PTNLD28-TUMOR_peak_9833	chr1	208042372	208042678	+	8.29776	NA	Intergenic	CpG	42158	NM_001025109	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
19-PTNLD28-TUMOR_peak_23860	chr12	43463789	43463932	+	8.29776	NA	Intergenic	Intergenic	-423560	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_108269	chrX	48911268	48911445	+	8.29776	NA	5' UTR (NM_001271836, exon 1 of 10)	5' UTR (NM_001271836, exon 1 of 10)	395	NM_001271836	90060	Hs.522643	NM_033626	HPRD:06595	CCDC120	-	coiled-coil domain containing 120	protein-coding
19-PTNLD28-TUMOR_peak_54594	chr2	102720865	102721233	+	8.29776	NA	intron (NM_001288706, intron 1 of 11)	intron (NM_001288706, intron 1 of 11)	34213	NM_001288706	3554	Hs.701982	NM_000877	HPRD:00994	IL1R1	CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80	interleukin 1 receptor, type I	protein-coding
19-PTNLD28-TUMOR_peak_38298	chr16	67207779	67207914	+	8.29755	NA	promoter-TSS (NM_001185057)	promoter-TSS (NM_001185057)	90	NM_003946	8996	Hs.513667	NM_003946	HPRD:05572	NOL3	ARC|FCM|MYP|NOP|NOP30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding
19-PTNLD28-TUMOR_peak_10607	chr1	228290107	228290238	+	8.29755	NA	intron (NM_024319, intron 4 of 7)	CpG-2288	850	NM_024319	79169	Hs.445952	NM_024319	HPRD:08512	C1orf35	MMTAG2|hMMTAG2	chromosome 1 open reading frame 35	protein-coding
19-PTNLD28-TUMOR_peak_37386	chr16	32000570	32000738	+	8.29642	NA	Intergenic	Intergenic	115575	NM_001265588	10308	Hs.460645	NM_003414	HPRD:06883	ZNF267	HZF2	zinc finger protein 267	protein-coding
19-PTNLD28-TUMOR_peak_58691	chr2	228028596	228029035	+	8.29642	NA	promoter-TSS (NM_000091)	promoter-TSS (NM_000091)	460	NM_000092	1286	Hs.591645	NM_000092	HPRD:00360	COL4A4	CA44	collagen, type IV, alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_8171	chr1	171664940	171665129	+	8.29642	NA	Intergenic	L1PA3|LINE|L1	-43261	NM_000261	4653	Hs.436037	NM_000261	HPRD:03387	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	myocilin, trabecular meshwork inducible glucocorticoid response	protein-coding
19-PTNLD28-TUMOR_peak_61687	chr20	48158389	48158568	+	8.29642	NA	intron (NM_000961, intron 4 of 9)	L2a|LINE|L2	26229	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_20124	chr11	75872509	75872843	+	8.29642	NA	Intergenic	Intergenic	44898	NM_004626	7481	Hs.108219	NM_004626	HPRD:04741	WNT11	HWNT11	wingless-type MMTV integration site family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_34049	chr15	66274420	66274811	+	8.29642	NA	exon (NM_032445, exon 6 of 23)	exon (NM_032445, exon 6 of 23)	-57956	NR_036196	100422905		NR_036196	miRBase:MI0015841	MIR4311	-	microRNA 4311	ncRNA
19-PTNLD28-TUMOR_peak_82955	chr5	145356079	145356562	+	8.29642	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	40194	NM_152550	153769	Hs.443728	NM_152550	HPRD:10229	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_84981	chr6	4371760	4371948	+	8.29642	NA	Intergenic	Intergenic	235548	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_5672	chr1	114472449	114472745	+	8.29402	NA	promoter-TSS (NR_110726)	promoter-TSS (NR_110726)	-450	NR_110726	101928846	Hs.232534	NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95948	chr7	142193472	142193575	+	8.29402	NA	Intergenic	Intergenic	-180608	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_48015	chr19	18263228	18263375	+	8.29387	NA	promoter-TSS (NM_005027)	promoter-TSS (NM_005027)	-687	NR_073517	5296	Hs.371344	NM_005027	HPRD:04404	PIK3R2	MPPH|P85B|p85|p85-BETA	phosphoinositide-3-kinase, regulatory subunit 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_48754	chr19	36547165	36547266	+	8.28693	NA	intron (NM_173636, intron 1 of 31)	intron (NM_173636, intron 1 of 31)	1432	NM_001083961	284403	Hs.116244	NM_173636	HPRD:10721	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
19-PTNLD28-TUMOR_peak_96437	chr7	151574198	151574437	+	8.28669	NA	promoter-TSS (NM_016203)	promoter-TSS (NM_016203)	-1	NM_016203	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_36574	chr16	18461287	18461450	+	8.28669	NA	Intergenic	LTR48|LTR|ERV1	11899	NR_107060	102465908		NR_107060		MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
19-PTNLD28-TUMOR_peak_1024	chr1	16160873	16161022	+	8.28669	NA	non-coding (NR_024279, exon 2 of 2)	non-coding (NR_024279, exon 2 of 2)	-13412	NM_015001	23013	Hs.744843	NM_015001	HPRD:10230	SPEN	HIAA0929|MINT|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
19-PTNLD28-TUMOR_peak_69608	chr3	107712659	107712870	+	8.28540	NA	Intergenic	L2a|LINE|L2	97171	NM_198793	961	Hs.446414	NM_001777	HPRD:03017	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
19-PTNLD28-TUMOR_peak_29346	chr14	21151389	21151546	+	8.28210	NA	promoter-TSS (NM_001145)	promoter-TSS (NM_001145)	-869	NM_001145	283	Hs.283749	NM_001145	HPRD:00105	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin, ribonuclease, RNase A family, 5	protein-coding
19-PTNLD28-TUMOR_peak_103456	chr9	66930903	66931041	+	8.28176	NA	intron (NR_121570, intron 3 of 4).2	intron (NR_121570, intron 3 of 4).2	8005	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_59229	chr2	241159918	241160040	+	8.28176	NA	Intergenic	HAL1|LINE|L1	-79906	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_68421	chr3	53876900	53877095	+	8.28176	NA	intron (NM_018397, intron 1 of 8)	intron (NM_018397, intron 1 of 8)	3423	NM_018397	55349	Hs.126688	NM_018397		CHDH	-	choline dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_26228	chr12	110271148	110271290	+	8.28176	NA	promoter-TSS (NM_021625)	promoter-TSS (NM_021625)	-7	NM_021625	59341	Hs.506713	NM_021625	HPRD:05667	TRPV4	CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding
19-PTNLD28-TUMOR_peak_102533	chr9	26265319	26265526	+	8.28176	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	198749	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
19-PTNLD28-TUMOR_peak_74816	chr4	25662588	25662736	+	8.28176	NA	intron (NM_001177999, intron 1 of 12)	intron (NM_001177999, intron 1 of 12)	4576	NM_001177999	10568	Hs.479372	NM_006424	HPRD:07251	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb	solute carrier family 34 (type II sodium/phosphate contransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_50947	chr2	9243021	9243149	+	8.28176	NA	Intergenic	MER65C|LTR|ERV1	-99209	NM_138799	129642	Hs.467634	NM_138799		MBOAT2	LPCAT4|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45655	chr18	46487067	46487185	+	8.28176	NA	Intergenic	Intergenic	-10045	NM_001190821	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_45937	chr18	55957412	55957851	+	8.28176	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	68877	NM_001144966	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_3947	chr1	61907634	61907914	+	8.27863	NA	intron (NM_001145511, intron 10 of 10)	intron (NM_001145511, intron 10 of 10)	-188584	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2684	chr1	40254795	40255271	+	8.27863	NA	promoter-TSS (NM_001720)	promoter-TSS (NM_001720)	-500	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
19-PTNLD28-TUMOR_peak_41528	chr17	40573792	40573945	+	8.27863	NA	intron (NM_012232, intron 1 of 1)	CpG	1470	NM_012232	284119	Hs.437191	NM_012232	HPRD:04433	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
19-PTNLD28-TUMOR_peak_21892	chr11	125277123	125277244	+	8.27863	NA	intron (NM_022062, intron 7 of 12)	intron (NM_022062, intron 7 of 12)	89023	NM_005103	9638	Hs.224008	NM_005103	HPRD:09212	FEZ1	-	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
19-PTNLD28-TUMOR_peak_2906	chr1	42676183	42676273	+	8.27773	NA	intron (NM_014947, intron 5 of 12)	L1PBb|LINE|L1	-45833	NM_033553	2980	Hs.778	NM_033553	HPRD:00767	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A (guanylin)	protein-coding
19-PTNLD28-TUMOR_peak_61282	chr20	43588396	43588555	+	8.27773	NA	intron (NM_006809, intron 1 of 6)	intron (NM_006809, intron 1 of 6)	639	NM_006809	10953	Hs.517066	NM_006809	HPRD:11641	TOMM34	HTOM34P|TOM34|URCC3	translocase of outer mitochondrial membrane 34	protein-coding
19-PTNLD28-TUMOR_peak_23528	chr12	27664755	27664894	+	8.27773	NA	Intergenic	MIR3|SINE|MIR	-12221	NM_177444	8496	Hs.172445	NM_003622	HPRD:04390	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
19-PTNLD28-TUMOR_peak_37006	chr16	28082141	28082275	+	8.27773	NA	Intergenic	Intergenic	-7378	NM_001109763	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_83953	chr5	171847526	171847744	+	8.27773	NA	intron (NM_001017995, intron 2 of 12)	intron (NM_001017995, intron 2 of 12)	33892	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_79159	chr5	17218944	17219080	+	8.27773	NA	intron (NM_006317, intron 1 of 1)	CpG	1342	NM_006317	10409	Hs.201641	NM_006317	HPRD:08389	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68637	chr3	59232029	59232222	+	8.27773	NA	Intergenic	LTR90A|LTR|LTR	-196410	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_85192	chr6	7910150	7910471	+	8.27773	NA	promoter-TSS (NM_001145549)	promoter-TSS (NM_001145549)	0	NM_001145549	81567	Hs.150837	NM_022085	HPRD:18249	TXNDC5	ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5 (endoplasmic reticulum)	protein-coding
19-PTNLD28-TUMOR_peak_34372	chr15	72468550	72468821	+	8.27773	NA	intron (NM_001012642, intron 1 of 11)	intron (NM_001012642, intron 1 of 11)	21451	NM_001012642	196996	Hs.596332	NM_001012642	HPRD:13161	GRAMD2	-	GRAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_75783	chr4	77609978	77610150	+	8.27773	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	115343	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_15762	chr10	116063875	116064036	+	8.27409	NA	intron (NM_001001936, intron 11 of 18)	intron (NM_001001936, intron 11 of 18)	64942	NM_001272046	340706	Hs.197741	NM_198496		VWA2	AMACO|CCSP-2|NET42	von Willebrand factor A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_94665	chr7	105171988	105172093	+	8.27409	NA	promoter-TSS (NM_021930)	promoter-TSS (NM_021930)	-492	NM_021930	60561	Hs.531388	NM_021930	HPRD:15250	RINT1	RINT-1	RAD50 interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_12811	chr10	32251905	32252010	+	8.27204	NA	Intergenic	MER50|LTR|ERV1	-34153	NM_001270698	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_15047	chr10	97889701	97889858	+	8.27204	NA	promoter-TSS (NM_001278525)	promoter-TSS (NM_001278525)	-34	NM_001278525	9849	Hs.600823	NM_014803		ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
19-PTNLD28-TUMOR_peak_82200	chr5	133436267	133436365	+	8.27204	NA	Intergenic	Intergenic	-14086	NM_003202	6932	Hs.573153	NM_003202	HPRD:01797	TCF7	TCF-1	transcription factor 7 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_38256	chr16	66864370	66864488	+	8.27204	NA	intron (NM_001018159, intron 1 of 20)	CpG	450	NM_003905	8883	Hs.460978	NM_003905	HPRD:04545	NAE1	A-116A10.1|APPBP1|ula-1	NEDD8 activating enzyme E1 subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_8980	chr1	192716561	192716658	+	8.27204	NA	Intergenic	Intergenic	-61560	NM_002923	5997	Hs.78944	NM_002923	HPRD:02917	RGS2	G0S8	regulator of G-protein signaling 2	protein-coding
19-PTNLD28-TUMOR_peak_68684	chr3	61925671	61925905	+	8.27204	NA	intron (NM_002841, intron 2 of 29)	AluSx1|SINE|Alu	378545	NM_002841	5793	Hs.595541	NM_002841		PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase, receptor type, G	protein-coding
19-PTNLD28-TUMOR_peak_48901	chr19	38908532	38908896	+	8.27204	NA	intron (NM_001146202, intron 7 of 16)	CpG	8231	NM_001146204	115727	Hs.130434	NM_052949	HPRD:09540	RASGRP4	-	RAS guanyl releasing protein 4	protein-coding
19-PTNLD28-TUMOR_peak_49017	chr19	39997677	39998032	+	8.27204	NA	exon (NM_203486, exon 7 of 9)	exon (NM_203486, exon 7 of 9)	-7899	NM_182704	348303	Hs.319284	NM_182704	HPRD:12134	SELV	-	selenoprotein V	protein-coding
19-PTNLD28-TUMOR_peak_78716	chr5	2907739	2907967	+	8.27204	NA	Intergenic	Intergenic	155608	NR_122125	153571	Hs.668017	NM_178569	HPRD:16706	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
19-PTNLD28-TUMOR_peak_98369	chr8	40838243	40838336	+	8.27204	NA	Intergenic	Intergenic	-82946	NM_001135731	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_74965	chr4	38373080	38373475	+	8.27204	NA	Intergenic	LTR81|LTR|Gypsy	151524	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
19-PTNLD28-TUMOR_peak_106637	chr9	137209618	137209753	+	8.27204	NA	Intergenic	Intergenic	-8624	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	retinoid X receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_80791	chr5	76011827	76012176	+	8.27204	NA	5' UTR (NM_001992, exon 1 of 2)	5' UTR (NM_001992, exon 1 of 2)	133	NM_001992	2149	Hs.482562	NM_001992	HPRD:01763	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II (thrombin) receptor	protein-coding
19-PTNLD28-TUMOR_peak_40377	chr17	17380263	17380438	+	8.27204	NA	promoter-TSS (NM_018019)	promoter-TSS (NM_018019)	50	NM_018019	55090	Hs.244595	NM_018019	HPRD:14383	MED9	MED25	mediator complex subunit 9	protein-coding
19-PTNLD28-TUMOR_peak_35962	chr16	4222167	4222278	+	8.27204	NA	Intergenic	L2c|LINE|L2	-56036	NM_001116	115	Hs.391860	NM_001116	HPRD:04489	ADCY9	AC9	adenylate cyclase 9	protein-coding
19-PTNLD28-TUMOR_peak_8267	chr1	173400446	173400590	+	8.27204	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	45776	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_16593	chr11	1661476	1661568	+	8.27204	NA	Intergenic	Intergenic	10489	NM_001001480	439915	Hs.653467	NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
19-PTNLD28-TUMOR_peak_38669	chr16	72961565	72961898	+	8.27204	NA	intron (NM_001164766, intron 2 of 8)	intron (NM_001164766, intron 2 of 8)	120543	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_26628	chr12	120555235	120555364	+	8.27152	NA	promoter-TSS (NM_006861)	promoter-TSS (NM_006861)	-656	NM_006861	11021	Hs.524788	NM_006861	HPRD:05010	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_55534	chr2	127842420	127842549	+	8.27152	NA	intron (NM_139343, intron 1 of 18)	intron (NM_139343, intron 1 of 18)	22419	NM_139343	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_706	chr1	10754770	10754896	+	8.27018	NA	intron (NM_017766, intron 3 of 15)	intron (NM_017766, intron 3 of 15)	101900	NM_001079843	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_25433	chr12	80085211	80085395	+	8.27018	NA	promoter-TSS (NM_002583)	promoter-TSS (NM_002583)	-513	NM_002583	5074	Hs.643130	NM_002583		PAWR	PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
19-PTNLD28-TUMOR_peak_103704	chr9	72057537	72057706	+	8.27018	NA	intron (NM_001163, intron 10 of 12)	intron (NM_001163, intron 10 of 12)	113380	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_28102	chr13	45914624	45914952	+	8.27018	NA	promoter-TSS (NR_024458)	promoter-TSS (NR_024458)	631	NM_003295	7178	Hs.374596	NM_003295	HPRD:15979	TPT1	HRF|TCTP|p02|p23	tumor protein, translationally-controlled 1	protein-coding
19-PTNLD28-TUMOR_peak_55326	chr2	120995160	120995312	+	8.27018	NA	Intergenic	Intergenic	-14252	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
19-PTNLD28-TUMOR_peak_95185	chr7	128865452	128865614	+	8.26952	NA	intron (NM_001130720, intron 1 of 16)	CpG	678	NM_015328	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_52411	chr2	43449157	43449293	+	8.26800	NA	TTS (NM_006887)	TTS (NM_006887)	4520	NM_006887	678	Hs.503093	NM_006887	HPRD:18319	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_85187	chr6	7731305	7731403	+	8.26737	NA	intron (NM_001718, intron 1 of 6)	intron (NM_001718, intron 1 of 6)	4343	NM_001718	654	Hs.285671	NM_001718	HPRD:00211	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
19-PTNLD28-TUMOR_peak_66026	chr22	47135006	47135322	+	8.26737	NA	Intergenic	Intergenic	-1012	NM_022766	64781	Hs.200668	NM_022766	HPRD:09878	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
19-PTNLD28-TUMOR_peak_5869	chr1	117722931	117723244	+	8.26737	NA	intron (NM_001253850, intron 1 of 4)	intron (NM_001253850, intron 1 of 4)	23371	NM_001253849	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_86231	chr6	27471502	27471626	+	8.26737	NA	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-30667	NM_007149	7738	Hs.158174	NM_007149	HPRD:03785	ZNF184	-	zinc finger protein 184	protein-coding
19-PTNLD28-TUMOR_peak_109739	chrX	149532284	149532414	+	8.26621	NA	intron (NM_001177465, intron 1 of 4)	CpG-28393	804	NM_001177465	10046	Hs.20136	NM_005491	HPRD:02126	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_855	chr1	12651441	12651563	+	8.26621	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	-12451	NR_106788	102466722		NR_106788		MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
19-PTNLD28-TUMOR_peak_85877	chr6	21589069	21589363	+	8.26302	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4756	NM_003107	6659	Hs.643910	NM_003107	HPRD:01695	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
19-PTNLD28-TUMOR_peak_47011	chr19	7991429	7991590	+	8.25984	NA	promoter-TSS (NM_206833)	promoter-TSS (NM_206833)	-458	NM_206833	404217	Hs.657978	NM_206833	HPRD:13097	CTXN1	CTXN	cortexin 1	protein-coding
19-PTNLD28-TUMOR_peak_19508	chr11	67331206	67331467	+	8.25795	NA	Intergenic	MER41A|LTR|ERV1	-19730	NM_000852	2950	Hs.523836	NM_000852	HPRD:00614	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
19-PTNLD28-TUMOR_peak_91560	chr7	22397378	22397561	+	8.25795	NA	promoter-TSS (NM_012294)	promoter-TSS (NM_012294)	-936	NM_012294	9771	Hs.174768	NM_012294	HPRD:15208	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
19-PTNLD28-TUMOR_peak_85988	chr6	24799093	24799187	+	8.25795	NA	promoter-TSS (NM_001282492)	promoter-TSS (NM_001282492)	-16	NM_001282492	101928603	Hs.635133	NM_001282492		C6orf229	-	chromosome 6 open reading frame 229	protein-coding
19-PTNLD28-TUMOR_peak_69665	chr3	109115788	109115987	+	8.25795	NA	Intergenic	Intergenic	-12950	NR_109842	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_19938	chr11	73045657	73045793	+	8.25795	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	26062	NM_014786	9828	Hs.533719	NM_014786	HPRD:10658	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
19-PTNLD28-TUMOR_peak_98386	chr8	41166960	41167109	+	8.25795	NA	promoter-TSS (NM_003012)	promoter-TSS (NM_003012)	-44	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16721	chr11	3193289	3193419	+	8.25795	NA	Intergenic	Intergenic	-6772	NM_145638	114879	Hs.436166	NM_020896	HPRD:09475	OSBPL5	OBPH1|ORP5	oxysterol binding protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_100701	chr8	126588546	126588697	+	8.25572	NA	Intergenic	Intergenic	144170	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_84953	chr6	4021859	4022038	+	8.25572	NA	intron (NM_003913, intron 1 of 14)	CpG	379	NM_003913	8899	Hs.159014	NM_003913	HPRD:09087	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding
19-PTNLD28-TUMOR_peak_7352	chr1	156676677	156676790	+	8.25362	NA	Intergenic	Intergenic	-1125	NM_001199723	1382	Hs.405662	NM_001878	HPRD:08353	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_38805	chr16	77246540	77247013	+	8.25310	NA	exon (NM_001129979, exon 11 of 11)	exon (NM_001129979, exon 11 of 11)	13427	NM_001129979	100130958	Hs.734779	NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_104480	chr9	92218751	92218950	+	8.25310	NA	Intergenic	CpG	-1077	NM_006705	10912	Hs.9701	NM_006705	HPRD:05383	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA-damage-inducible, gamma	protein-coding
19-PTNLD28-TUMOR_peak_105221	chr9	110500499	110500610	+	8.25310	NA	Intergenic	Intergenic	-248507	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_101456	chr8	142213062	142213263	+	8.25295	NA	Intergenic	SVA_D|Other|Other	25511	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45, member 4	protein-coding
19-PTNLD28-TUMOR_peak_19090	chr11	63675498	63675850	+	8.25295	NA	intron (NM_001163296, intron 16 of 16)	intron (NM_001163296, intron 16 of 16)	8642	NM_173587	283248	Hs.98788	NM_173587	HPRD:15234	RCOR2	-	REST corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_77380	chr4	144257939	144258098	+	8.25295	NA	promoter-TSS (NM_002039)	promoter-TSS (NM_002039)	35	NM_002039	2549	Hs.80720	NM_002039	HPRD:05116	GAB1	-	GRB2-associated binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108256	chrX	48774501	48774721	+	8.25295	NA	intron (NM_006875, intron 3 of 5)	intron (NM_006875, intron 3 of 5)	1802	NM_006875	11040	Hs.727148	NM_006875	HPRD:02244	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_54648	chr2	105792965	105793180	+	8.25208	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-65128	NM_007227	11250	Hs.590903	NM_007227	HPRD:05325	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
19-PTNLD28-TUMOR_peak_42548	chr17	56065812	56066156	+	8.25208	NA	promoter-TSS (NM_007146)	promoter-TSS (NM_007146)	-369	NM_007146	7716	Hs.463569	NM_007146		VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_46275	chr18	72920882	72921149	+	8.25208	NA	5' UTR (NM_175907, exon 1 of 2)	5' UTR (NM_175907, exon 1 of 2)	266	NM_175907	284273	Hs.465433	NM_175907		ZADH2	-	zinc binding alcohol dehydrogenase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_2769	chr1	41175307	41175434	+	8.25208	NA	intron (NM_001142590, intron 2 of 14)	intron (NM_001142590, intron 2 of 14)	-17437	NR_024567	100130557	Hs.233458	NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_68321	chr3	52187808	52187961	+	8.24972	NA	intron (NM_001161581, intron 1 of 10)	intron (NM_001161581, intron 1 of 10)	822	NM_001161581	25886	Hs.476306	NM_015426	HPRD:08523	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
19-PTNLD28-TUMOR_peak_84435	chr5	178166930	178167140	+	8.24972	NA	Intergenic	Intergenic	-9332	NM_005649	6940	Hs.484324	NM_005649	HPRD:03900	ZNF354A	EZNF|HEL104|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
19-PTNLD28-TUMOR_peak_40611	chr17	20403841	20403952	+	8.24972	NA	TTS (NR_029393)	TTS (NR_029393)	3915	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_40559	chr17	19350774	19350879	+	8.24972	NA	Intergenic	Intergenic	36335	NM_007148	7732	Hs.189482	NM_007148	HPRD:03140	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
19-PTNLD28-TUMOR_peak_9483	chr1	204011029	204011203	+	8.24972	NA	promoter-TSS (NR_027902)	promoter-TSS (NR_027902)	-724	NR_027902	284573	Hs.406979	NR_027902	HPRD:08279	LINC00303	C1orf157|NCRNA00303	long intergenic non-protein coding RNA 303	ncRNA
19-PTNLD28-TUMOR_peak_14192	chr10	73030141	73030261	+	8.24972	NA	intron (NM_001244889, intron 1 of 15)	L2a|LINE|L2	-48809	NR_033414	55315	Hs.438419	NM_018344	HPRD:11570	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 (equilibrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_17279	chr11	12985734	12985853	+	8.24771	NA	Intergenic	Intergenic	25302	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
19-PTNLD28-TUMOR_peak_60251	chr20	24446569	24446676	+	8.24771	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-3213	NM_024893	79953	Hs.124638	NM_024893	HPRD:12766	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
19-PTNLD28-TUMOR_peak_23587	chr12	29935468	29935750	+	8.24771	NA	intron (NM_175861, intron 1 of 17)	intron (NM_175861, intron 1 of 17)	1134	NM_001193451	83857	Hs.401954	NM_175861	HPRD:12472	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_78084	chr4	175135292	175135500	+	8.24752	NA	Intergenic	CpG	-69432	NM_001040157	80817	Hs.555989	NM_030633	HPRD:13885	CEP44	KIAA1712|PS1TP3	centrosomal protein 44kDa	protein-coding
19-PTNLD28-TUMOR_peak_90535	chr6	167724249	167724486	+	8.24752	NA	intron (NM_018974, intron 7 of 7)	AluSz|SINE|Alu	-14207	NM_031949	83887	Hs.520554	NM_031949		TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase-like family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_78485	chr4	190058349	190058503	+	8.24752	NA	Intergenic	L1HS|LINE|L1	-522334	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_56843	chr2	169453531	169453690	+	8.24752	NA	intron (NM_203463, intron 3 of 9)	LTR32|LTR|ERVL	14157	NR_039933	100616356		NR_039933		MIR4774	-	microRNA 4774	ncRNA
19-PTNLD28-TUMOR_peak_90906	chr7	2387721	2387873	+	8.24752	NA	Intergenic	Intergenic	-6677	NM_001037283	8662	Hs.371001	NM_003751	HPRD:06795	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding
19-PTNLD28-TUMOR_peak_20473	chr11	86642996	86643266	+	8.24752	NA	intron (NR_120592, intron 2 of 2)	intron (NR_120592, intron 2 of 2)	23309	NM_012193	8322	Hs.591968	NM_012193	HPRD:05203	FZD4	CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4	frizzled class receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_42884	chr17	62398554	62398686	+	8.24752	NA	3' UTR (NM_000442, exon 2 of 2)	3' UTR (NM_000442, exon 2 of 2)	8463	NM_000442	5175	Hs.376675	NM_000442		PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet/endothelial cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_74524	chr4	11151690	11151785	+	8.24752	NA	Intergenic	L1MCa|LINE|L1	-218714	NR_030298	693157		NR_030298	miRBase:MI0003579	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
19-PTNLD28-TUMOR_peak_69072	chr3	73482860	73483026	+	8.24752	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-87530	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_59375	chr20	322425	322606	+	8.24752	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-4855	NM_024958	80023	Hs.416024	NM_024958	HPRD:12791	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
19-PTNLD28-TUMOR_peak_63140	chr21	32901885	32902004	+	8.24752	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	29346	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_91739	chr7	27200667	27200802	+	8.24752	NA	Intergenic	CpG	4415	NM_152739	3205	Hs.659350	NM_152739	HPRD:00844	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
19-PTNLD28-TUMOR_peak_55504	chr2	124897419	124897894	+	8.24752	NA	intron (NM_130773, intron 1 of 23)	L1PA2|LINE|L1	114792	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_45791	chr18	49267448	49267607	+	8.24752	NA	Intergenic	L1PA2|LINE|L1	349115	NR_040074	100287225	Hs.448920	NR_040074	ENSG00000227115	LOC100287225	-	uncharacterized LOC100287225	ncRNA
19-PTNLD28-TUMOR_peak_80366	chr5	67103032	67103269	+	8.24752	NA	Intergenic	Intergenic	-382554	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_13351	chr10	46882833	46883173	+	8.24752	NA	Intergenic	Intergenic	-14638	NR_027632	414241	Hs.594331	NM_001098846	ENSG00000165874	FAM35BP	FAM35B|FAM35EP|bA38L15.1	family with sequence similarity 35, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_68716	chr3	63202861	63203005	+	8.24752	NA	Intergenic	L1PA2|LINE|L1	-60981	NM_001130003	132204	Hs.648668	NM_144642	HPRD:15458	SYNPR	SPO	synaptoporin	protein-coding
19-PTNLD28-TUMOR_peak_86427	chr6	29981203	29981332	+	8.24752	NA	non-coding (NR_103542, exon 1 of 1)	non-coding (NR_103542, exon 1 of 1)	432	NR_103542	100507399	Hs.653168	NR_103542		HCG8	HCGVIII|HCGVIII-1	HLA complex group 8	ncRNA
19-PTNLD28-TUMOR_peak_99256	chr8	76236587	76236711	+	8.24752	NA	promoter-TSS (NR_103850)	promoter-TSS (NR_103850)	-89	NR_103850	101805492	Hs.571424	NR_103848		CASC9	LINC00981	cancer susceptibility candidate 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_72807	chr3	184363161	184363346	+	8.24752	NA	Intergenic	L2c|LINE|L2	66583	NM_022149	64110	Hs.306123	NM_022149	HPRD:14348	MAGEF1	-	melanoma antigen family F, 1	protein-coding
19-PTNLD28-TUMOR_peak_8449	chr1	178289354	178289468	+	8.24752	NA	intron (NM_170692, intron 3 of 17)	L1PA2|LINE|L1	-21195	NM_004841	9462	Hs.496139	NM_004841	HPRD:05845	RASAL2	NGAP	RAS protein activator like 2	protein-coding
19-PTNLD28-TUMOR_peak_24803	chr12	58176462	58177035	+	8.24752	NA	TTS (NM_015433)	TTS (NM_015433)	220	NM_001172697	10102	Hs.632704	NM_005726	HPRD:05285	TSFM	EFTS|EFTSMT	Ts translation elongation factor, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_101166	chr8	134752062	134752282	+	8.24752	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	37423	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
19-PTNLD28-TUMOR_peak_47183	chr19	10317034	10317185	+	8.24752	NA	Intergenic	Intergenic	-11354	NM_001130823	1786	Hs.202672	NM_001379	HPRD:00532	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT	DNA (cytosine-5-)-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_104574	chr9	94537841	94537975	+	8.24752	NA	intron (NM_004560, intron 2 of 8)	intron (NM_004560, intron 2 of 8)	-139281	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	ncRNA
19-PTNLD28-TUMOR_peak_23820	chr12	42326600	42326739	+	8.24752	NA	Intergenic	Intergenic	212004	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_105551	chr9	116648856	116648987	+	8.24752	NA	intron (NM_133374, intron 1 of 13)	intron (NM_133374, intron 1 of 13)	10359	NM_133374	114991	Hs.349208	NM_133374	HPRD:18719	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
19-PTNLD28-TUMOR_peak_53870	chr2	86275943	86276264	+	8.24752	NA	exon (NM_015425, exon 18 of 34)	exon (NM_015425, exon 18 of 34)	-25112	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
19-PTNLD28-TUMOR_peak_101657	chr8	144798834	144799176	+	8.24704	NA	intron (NM_139021, intron 1 of 13)	CpG	498	NM_139021	225689	Hs.493169	NM_139021	HPRD:16867	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
19-PTNLD28-TUMOR_peak_99936	chr8	104512061	104512156	+	8.24704	NA	promoter-TSS (NM_001100117)	promoter-TSS (NM_001100117)	-868	NM_001100117	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_19342	chr11	65756835	65756936	+	8.24673	NA	Intergenic	Intergenic	-12665	NM_003860	8815	Hs.433759	NM_003860	HPRD:04817	BANF1	BAF|BCRP1|D14S1460|NGPS	barrier to autointegration factor 1	protein-coding
19-PTNLD28-TUMOR_peak_61320	chr20	43983996	43984090	+	8.24588	NA	Intergenic	Intergenic	-6534	NM_001197129	90196	Hs.655055	NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	Sys1 golgi trafficking protein	protein-coding
19-PTNLD28-TUMOR_peak_97578	chr8	22246505	22246747	+	8.23919	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	21576	NM_001135153	23516	Hs.491232	NM_015359	HPRD:12288	SLC39A14	LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 (zinc transporter), member 14	protein-coding
19-PTNLD28-TUMOR_peak_98780	chr8	54792441	54792623	+	8.23676	NA	promoter-TSS (NR_104578)	promoter-TSS (NR_104578)	-900	NR_104578	8601	Hs.368733	NM_003702	HPRD:06225	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G-protein signaling 20	protein-coding
19-PTNLD28-TUMOR_peak_66998	chr3	17533227	17533345	+	8.23676	NA	intron (NM_001134381, intron 4 of 23)	L1PA10|LINE|L1	208226	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_751	chr1	11332898	11332986	+	8.23676	NA	promoter-TSS (NM_013319)	promoter-TSS (NM_013319)	-313	NM_013319	29914	Hs.522933	NM_013319	HPRD:15487	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_2907	chr1	42680375	42680546	+	8.23676	NA	intron (NM_014947, intron 5 of 12)	L1MEf|LINE|L1	-50065	NM_033553	2980	Hs.778	NM_033553	HPRD:00767	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A (guanylin)	protein-coding
19-PTNLD28-TUMOR_peak_101381	chr8	141129637	141129733	+	8.23676	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	338176	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_39840	chr17	4806736	4806873	+	8.23676	NA	promoter-TSS (NM_000080)	promoter-TSS (NM_000080)	-435	NM_000080	1145	Hs.654535	NM_000080	HPRD:00008	CHRNE	ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS	cholinergic receptor, nicotinic, epsilon (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_22596	chr12	4381159	4381392	+	8.23676	NA	intron (NR_125790, intron 1 of 1)	CpG	-1627	NM_001759	894	Hs.376071	NM_001759	HPRD:00451	CCND2	KIAK0002	cyclin D2	protein-coding
19-PTNLD28-TUMOR_peak_60566	chr20	31989727	31989844	+	8.23676	NA	promoter-TSS (NM_016082)	promoter-TSS (NM_016082)	-410	NM_001278168	51654	Hs.435952	NM_016082	HPRD:12189	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51741	chr2	27579036	27579226	+	8.23519	NA	intron (NM_001521, intron 1 of 19)	intron (NM_001521, intron 1 of 19)	770	NM_001035521	2976	Hs.75782	NM_001521	HPRD:05347	GTF3C2	TFIIIC-BETA|TFIIIC110	general transcription factor IIIC, polypeptide 2, beta 110kDa	protein-coding
19-PTNLD28-TUMOR_peak_24638	chr12	56320878	56321032	+	8.23016	NA	promoter-TSS (NM_001143853)	promoter-TSS (NM_001143853)	-46	NM_001143853	84305	Hs.505687	NM_032345	HPRD:17940	WIBG	PYM	within bgcn homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_57797	chr2	202014634	202014779	+	8.23016	NA	intron (NM_001202517, intron 7 of 8)	AluJb|SINE|Alu	7809	NR_040030	65072	Hs.664613	NR_040030	ENSG00000226312	CFLAR-AS1	ALS2CR10	CFLAR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10745	chr1	229699594	229699748	+	8.23016	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-5229	NM_012089	23456	Hs.17614	NM_012089	HPRD:09263	ABCB10	EST20237|M-ABC2|MTABC2	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding
19-PTNLD28-TUMOR_peak_63709	chr21	43283341	43283621	+	8.22866	NA	promoter-TSS (NR_104260)	promoter-TSS (NR_104260)	-70	NR_104260	63977	Hs.473893	NM_022115	HPRD:11458	PRDM15	C21orf83|PFM15|ZNF298	PR domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_59095	chr2	238467685	238467914	+	8.22866	NA	Intergenic	Intergenic	-7418	NM_015893	51052	Hs.247710	NM_015893	HPRD:04046	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
19-PTNLD28-TUMOR_peak_45686	chr18	47230793	47230887	+	8.22866	NA	Intergenic	Intergenic	109411	NM_006111	10449	Hs.200136	NM_006111	HPRD:10380	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_94934	chr7	117284693	117284909	+	8.22866	NA	intron (NM_000492, intron 23 of 26)	intron (NM_000492, intron 23 of 26)	164784	NM_000492	1080	Hs.489786	NM_000492	HPRD:03883	CFTR	ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1	cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)	protein-coding
19-PTNLD28-TUMOR_peak_46498	chr19	615769	615983	+	8.22866	NA	exon (NM_001194, exon 8 of 8)	exon (NM_001194, exon 8 of 8)	17692	NM_005035	5442	Hs.254113	NM_005035	HPRD:03468	POLRMT	APOLMT|MTRNAP|MTRPOL|h-mtRPOL	polymerase (RNA) mitochondrial (DNA directed)	protein-coding
19-PTNLD28-TUMOR_peak_59199	chr2	240566258	240566634	+	8.22866	NA	Intergenic	CpG	-118108	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_6954	chr1	153379827	153380062	+	8.22866	NA	Intergenic	L1PA5|LINE|L1	-9056	NM_176823	338324	Hs.442337	NM_176823	HPRD:15290	S100A7A	NICE-2|S100A15|S100A7L1|S100A7f	S100 calcium binding protein A7A	protein-coding
19-PTNLD28-TUMOR_peak_65633	chr22	40908491	40908714	+	8.22866	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-9202	NR_109965	101927257	Hs.662725	NR_109965	ENSG00000232564	LOC101927257	-	uncharacterized LOC101927257	ncRNA
19-PTNLD28-TUMOR_peak_34648	chr15	77807152	77807600	+	8.22866	NA	Intergenic	L2b|LINE|L2	94133	NM_018200	10363	Hs.69594	NM_018200	HPRD:16116	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
19-PTNLD28-TUMOR_peak_104544	chr9	93922126	93922286	+	8.22866	NA	Intergenic	CpG	-84792	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
19-PTNLD28-TUMOR_peak_110327	chrY	28549661	28549836	+	8.22866	NA	Intergenic	(CTAGGG)n|Simple_repeat|Simple_repeat	675111	NR_002176	474148	Hs.511777	NR_002176		TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_72201	chr3	168487684	168487782	+	8.22866	NA	intron (NR_021485, intron 6 of 15)	L1PA3|LINE|L1	-132000	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LOC100507661	-	uncharacterized LOC100507661	ncRNA
19-PTNLD28-TUMOR_peak_67751	chr3	42947784	42947928	+	8.22866	NA	exon (NM_001134656, exon 1 of 4)	exon (NM_001134656, exon 1 of 4)	198	NM_001134656	389114	Hs.720173	NM_207404	HPRD:13516	ZNF662	-	zinc finger protein 662	protein-coding
19-PTNLD28-TUMOR_peak_54174	chr2	95401509	95401616	+	8.22866	NA	Intergenic	CpG	25367	NR_038409	90499	Hs.458439	NR_038409		FAM95A	-	family with sequence similarity 95, member A	ncRNA
19-PTNLD28-TUMOR_peak_85918	chr6	22881104	22881207	+	8.22866	NA	Intergenic	Intergenic	311477	NM_138574	154150	Hs.629246	NM_138574	HPRD:17935	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_83936	chr5	171538100	171538232	+	8.22765	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	77180	NM_005990	6793	Hs.744005	NM_005990	HPRD:06796	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_19011	chr11	62439791	62440028	+	8.22765	NA	promoter-TSS (NM_024099)	promoter-TSS (NM_024099)	-668	NM_024099	79081	Hs.9061	NM_024099	HPRD:14499	C11orf48	-	chromosome 11 open reading frame 48	protein-coding
19-PTNLD28-TUMOR_peak_86952	chr6	34624502	34624658	+	8.22765	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	40047	NM_024294	64771	Hs.643498	NM_022758	HPRD:12837	C6orf106	FP852|dJ391O22.4	chromosome 6 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_7193	chr1	155231347	155231747	+	8.22575	NA	intron (NM_005698, intron 1 of 8)	intron (NM_005698, intron 1 of 8)	629	NM_052837	10067	Hs.200600	NM_005698	HPRD:06074	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_9077	chr1	198125345	198125470	+	8.22490	NA	promoter-TSS (NM_133494)	promoter-TSS (NM_133494)	-701	NM_133494	140609	Hs.24119	NM_133494	HPRD:06027	NEK7	-	NIMA-related kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_71862	chr3	155462049	155462180	+	8.22301	NA	Intergenic	CpG	-40117	NM_014996	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_34645	chr15	77799460	77799680	+	8.22301	NA	Intergenic	MLT2B4|LTR|ERVL	86327	NM_018200	10363	Hs.69594	NM_018200	HPRD:16116	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
19-PTNLD28-TUMOR_peak_79158	chr5	17216355	17216734	+	8.22216	NA	promoter-TSS (NM_001271606)	promoter-TSS (NM_001271606)	-388	NM_001271606	10409	Hs.201641	NM_006317	HPRD:08389	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_44026	chr17	79874614	79874766	+	8.22216	NA	intron (NM_016538, intron 3 of 9)	intron (NM_016538, intron 3 of 9)	1368	NM_016538	51547	Hs.514636	NM_016538	HPRD:12094	SIRT7	SIR2L7	sirtuin 7	protein-coding
19-PTNLD28-TUMOR_peak_9349	chr1	202547869	202547973	+	8.22216	NA	intron (NM_032104, intron 12 of 12)	MIRc|SINE|MIR	38679	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_106809	chr9	139948560	139948770	+	8.22216	NA	promoter-TSS (NM_001246)	promoter-TSS (NM_001246)	-162	NM_001246	954	Hs.123036	NM_001246	HPRD:03600	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
19-PTNLD28-TUMOR_peak_98965	chr8	61865552	61865665	+	8.22216	NA	Intergenic	Intergenic	14699	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_93386	chr7	74873736	74873951	+	8.22216	NA	intron (NR_027776, intron 5 of 5)	LTR32|LTR|ERVL	-6202	NR_002206	2970	Hs.654705	NR_002206		GTF2IP1	WBSCR7	general transcription factor IIi, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_34756	chr15	80215483	80215860	+	8.22216	NA	promoter-TSS (NM_001199757)	promoter-TSS (NM_001199757)	-7	NM_001199757	400410	Hs.729127	NM_001100879	ENSG00000180953	ST20	HCCS-1	suppressor of tumorigenicity 20	protein-coding
19-PTNLD28-TUMOR_peak_46351	chr18	74876799	74877178	+	8.22016	NA	Intergenic	Intergenic	-32214	NM_001025101	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_3987	chr1	62617370	62617491	+	8.22016	NA	intron (NM_176877, intron 42 of 42)	intron (NM_176877, intron 42 of 42)	-43044	NM_001164835	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_44119	chr17	80494103	80494233	+	8.22016	NA	intron (NM_004514, intron 1 of 8)	L1M4c|LINE|L1	16574	NM_004514	3607	Hs.591140	NM_004514	HPRD:00982	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
19-PTNLD28-TUMOR_peak_101594	chr8	144252381	144252760	+	8.22016	NA	Intergenic	Intergenic	-10517	NM_001130478	4062	Hs.159590	NM_002347	HPRD:04691	LY6H	NMLY6	lymphocyte antigen 6 complex, locus H	protein-coding
19-PTNLD28-TUMOR_peak_12595	chr10	28343625	28343913	+	8.22016	NA	intron (NM_173496, intron 18 of 18)	AluSz|SINE|Alu	-55785	NM_018076	55130	Hs.127530	NM_018076	HPRD:10663	ARMC4	CILD23	armadillo repeat containing 4	protein-coding
19-PTNLD28-TUMOR_peak_107748	chrX	20380792	20381124	+	8.22016	NA	Intergenic	Intergenic	-96208	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_51809	chr2	28455219	28455395	+	8.22016	NA	intron (NM_199193, intron 8 of 13)	Tigger3a|DNA|TcMar-Tigger	-25479	NR_120504	100505736	Hs.659540	NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
19-PTNLD28-TUMOR_peak_47815	chr19	16508631	16509069	+	8.22016	NA	intron (NM_001258374, intron 16 of 23)	intron (NM_001258374, intron 16 of 23)	73199	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_36024	chr16	4598868	4599004	+	8.22016	NA	Intergenic	Intergenic	-7555	NM_001145011	342346	Hs.684212	NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_69196	chr3	79067924	79068193	+	8.22016	NA	5' UTR (NM_133631, exon 1 of 29)	5' UTR (NM_133631, exon 1 of 29)	551	NM_001145845	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_5996	chr1	120514787	120514906	+	8.22016	NA	intron (NM_024408, intron 5 of 33)	intron (NM_024408, intron 5 of 33)	-75699	NM_021794	11085	Hs.283011	NM_021794	HPRD:05307	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
19-PTNLD28-TUMOR_peak_94553	chr7	102311429	102311671	+	8.21921	NA	intron (NM_032959, intron 1 of 8)	MIR|SINE|MIR	626	NM_032959	246721	Hs.610255	NM_032958	HPRD:17878	POLR2J2	HRPB11B|RPB11b1	polymerase (RNA) II (DNA directed) polypeptide J2	protein-coding
19-PTNLD28-TUMOR_peak_106639	chr9	137247930	137248111	+	8.21403	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-23121	NM_001291920	6256	Hs.590886	NM_002957		RXRA	NR2B1	retinoid X receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_65542	chr22	39320419	39320583	+	8.21403	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-33026	NM_145699	200315	Hs.226307	NM_145699	HPRD:06168	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A	protein-coding
19-PTNLD28-TUMOR_peak_9457	chr1	203576348	203576545	+	8.21403	NA	Intergenic	Intergenic	-19469	NM_001001396	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_1238	chr1	19981003	19981099	+	8.21403	NA	intron (NM_001278166, intron 1 of 3)	intron (NM_001278166, intron 1 of 3)	6947	NM_001278166	4681	Hs.654502	NM_005380	HPRD:09001	NBL1	D1S1733E|DAN|DAND1|NB|NO3	neuroblastoma 1, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_6525	chr1	147932988	147933088	+	8.21205	NA	intron (NR_102404, intron 17 of 18).2	intron (NR_102404, intron 17 of 18).2	22381	NM_001135789	653598	Hs.534674	NM_001135789	ENSG00000198161	PPIAL4C	COAS-2	peptidylprolyl isomerase A (cyclophilin A)-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_8711	chr1	182992383	182992486	+	8.21164	NA	promoter-TSS (NM_002293)	promoter-TSS (NM_002293)	-161	NM_002293	3915	Hs.609663	NM_002293	HPRD:01030	LAMC1	LAMB2	laminin, gamma 1 (formerly LAMB2)	protein-coding
19-PTNLD28-TUMOR_peak_44012	chr17	79702611	79703067	+	8.20936	NA	Intergenic	Intergenic	23573	NM_001270953	1468	Hs.548187	NM_012140	HPRD:08424	SLC25A10	DIC	solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_19	chr1	367738	367903	+	8.20631	NA	exon (NM_001005277, exon 1 of 1)	exon (NM_001005277, exon 1 of 1)	161	NM_001005277	81399	Hs.632360	NM_001005277	HPRD:14969	OR4F16	OR1-1|OR7-21	olfactory receptor, family 4, subfamily F, member 16	protein-coding
19-PTNLD28-TUMOR_peak_19235	chr11	65029789	65029905	+	8.20631	NA	intron (NM_002689, intron 1 of 17)	CpG	415	NM_002689	23649	Hs.201897	NM_002689		POLA2	-	polymerase (DNA directed), alpha 2, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_106854	chr9	140335756	140335879	+	8.20631	NA	promoter-TSS (NM_001033113)	promoter-TSS (NM_001033113)	84	NM_198585	377841	Hs.512562	NM_198585	HPRD:16864	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
19-PTNLD28-TUMOR_peak_58364	chr2	218684961	218685097	+	8.20631	NA	intron (NM_022648, intron 23 of 32)	L3b|LINE|CR1	-63713	NR_026597	729582	Hs.572788	NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
19-PTNLD28-TUMOR_peak_83321	chr5	152068557	152068677	+	8.20479	NA	intron (NR_109877, intron 3 of 4)	intron (NR_109877, intron 3 of 4)	283292	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19-PTNLD28-TUMOR_peak_69734	chr3	111483624	111483796	+	8.20479	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	32383	NM_001134437	90102	Hs.603252	NM_145753	HPRD:06611	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_63944	chr21	45715160	45715397	+	8.20479	NA	intron (NM_000383, intron 12 of 13)	intron (NM_000383, intron 12 of 13)	-4639	NM_002626	5211	Hs.255093	NM_002626	HPRD:01385	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver	protein-coding
19-PTNLD28-TUMOR_peak_41467	chr17	39823321	39823436	+	8.20218	NA	Intergenic	Intergenic	-21749	NM_005801	10209	Hs.150580	NM_005801		EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_2658	chr1	39956602	39956755	+	8.20218	NA	promoter-TSS (NM_181809)	promoter-TSS (NM_181809)	-640	NM_181809	353500	Hs.472497	NM_181809		BMP8A	-	bone morphogenetic protein 8a	protein-coding
19-PTNLD28-TUMOR_peak_4939	chr1	94130329	94130435	+	8.20218	NA	intron (NM_001261408, intron 4 of 13)	intron (NM_001261408, intron 4 of 13)	16544	NM_001261409	8412	Hs.36958	NM_003567	HPRD:05268	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
19-PTNLD28-TUMOR_peak_86144	chr6	26384400	26384498	+	8.20218	NA	intron (NM_001197239, intron 2 of 5)	AluJr|SINE|Alu	1010	NM_001197237	10385	Hs.373938	NM_006995	HPRD:12545	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin, subfamily 2, member A2	protein-coding
19-PTNLD28-TUMOR_peak_26684	chr12	120972990	120973125	+	8.20218	NA	intron (NM_014868, intron 1 of 16)	MIR|SINE|MIR	925	NM_014868	9921	Hs.442798	NM_014868	HPRD:11496	RNF10	RIE2	ring finger protein 10	protein-coding
19-PTNLD28-TUMOR_peak_8667	chr1	182112456	182112558	+	8.19945	NA	Intergenic	Intergenic	-81660	NM_001009992	127665	Hs.684328	NM_001009992	HPRD:18361	ZNF648	-	zinc finger protein 648	protein-coding
19-PTNLD28-TUMOR_peak_105617	chr9	117453415	117453669	+	8.19761	NA	Intergenic	Intergenic	-9173	NM_001199233	100505478	Hs.200101	NM_001199233		LOC100505478	-	uncharacterized LOC100505478	protein-coding
19-PTNLD28-TUMOR_peak_108991	chrX	101854312	101854477	+	8.19761	NA	promoter-TSS (NM_022838)	promoter-TSS (NM_022838)	-32	NM_001168482	64860	Hs.522729	NM_022838	HPRD:06521	ARMCX5	GASP5	armadillo repeat containing, X-linked 5	protein-coding
19-PTNLD28-TUMOR_peak_82660	chr5	140174347	140174659	+	8.19761	NA	promoter-TSS (NM_018905)	promoter-TSS (NM_018905)	59	NM_031495	56146	Hs.199343	NM_018905	HPRD:07320	PCDHA2	PCDH-ALPHA2	protocadherin alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_94255	chr7	99620411	99620538	+	8.19761	NA	intron (NM_001287054, intron 2 of 7)	intron (NM_001287054, intron 2 of 7)	7279	NM_001287054	7586	Hs.615360	NM_003439	HPRD:03161	ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
19-PTNLD28-TUMOR_peak_30296	chr14	52579210	52579306	+	8.19761	NA	Intergenic	(CTCA)n|Simple_repeat|Simple_repeat	-43312	NM_007361	22795	Hs.369840	NM_007361	HPRD:05654	NID2	NID-2	nidogen 2 (osteonidogen)	protein-coding
19-PTNLD28-TUMOR_peak_51306	chr2	16245889	16246070	+	8.19761	NA	Intergenic	Intergenic	-164134	NR_110230	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_102620	chr9	31776471	31776782	+	8.19761	NA	Intergenic	HERVK11-int|LTR|ERVK	-607975	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_8248	chr1	173017924	173018077	+	8.19761	NA	intron (NM_005092, intron 1 of 2)	intron (NM_005092, intron 1 of 2)	2103	NM_005092	8995	Hs.248197	NM_005092		TNFSF18	AITRL|GITRL|TL6|hGITRL	tumor necrosis factor (ligand) superfamily, member 18	protein-coding
19-PTNLD28-TUMOR_peak_53644	chr2	76955993	76956088	+	8.19761	NA	Intergenic	L1PA3|LINE|L1	-257051	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
19-PTNLD28-TUMOR_peak_106043	chr9	127177481	127177877	+	8.19761	NA	promoter-TSS (NM_002799)	promoter-TSS (NM_002799)	73	NM_002799	5695	Hs.213470	NM_002799	HPRD:04940	PSMB7	Z	proteasome (prosome, macropain) subunit, beta type, 7	protein-coding
19-PTNLD28-TUMOR_peak_88246	chr6	71597629	71597787	+	8.19761	NA	intron (NM_080742, intron 2 of 3)	L2c|LINE|L2	69080	NM_080742	135152	Hs.713609	NM_080742		B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_28407	chr13	66833330	66833473	+	8.19761	NA	Intergenic	L1PA3|LINE|L1	-565900	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_56590	chr2	160868172	160868318	+	8.19761	NA	intron (NM_001007267, intron 10 of 26)	intron (NM_001007267, intron 10 of 26)	50881	NM_001195641	22925	Hs.410477	NM_007366	HPRD:09222	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1, 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_922	chr1	14219491	14219792	+	8.19761	NA	Intergenic	CpG	143765	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_74658	chr4	17285892	17286462	+	8.19761	NA	Intergenic	MER76|LTR|ERVL	227680	NM_000320	5860	Hs.75438	NM_000320	HPRD:02025	QDPR	DHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
19-PTNLD28-TUMOR_peak_60313	chr20	25311020	25311204	+	8.19761	NA	intron (NM_001042472, intron 2 of 12)	L1PA3|LINE|L1	60506	NM_015600	26090	Hs.441550	NM_015600	HPRD:07094	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2	abhydrolase domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_77665	chr4	153927250	153927391	+	8.19761	NA	Intergenic	Intergenic	63185	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_55867	chr2	134525887	134526556	+	8.19761	NA	Intergenic	L2a|LINE|L2	-200190	NM_207363	344148	Hs.537329	NM_207363	HPRD:16936	NCKAP5	ERIH1|ERIH2|NAP5	NCK-associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_14353	chr10	75659173	75659432	+	8.19761	NA	Intergenic	MIR3|SINE|MIR	-11560	NM_002658	5328	Hs.77274	NM_002658	HPRD:01883	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
19-PTNLD28-TUMOR_peak_50822	chr2	1978320	1978471	+	8.19761	NA	intron (NM_015025, intron 8 of 24)	intron (NM_015025, intron 8 of 24)	-230076	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_13930	chr10	66813672	66813960	+	8.19761	NA	Intergenic	CpG	228531	NR_001446	305	Hs.591361	NR_001446		ANXA2P3	ANX2L3|ANX2P3|LIP2|LPC2C	annexin A2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_97502	chr8	21321257	21321649	+	8.19761	NA	Intergenic	THE1B|LTR|ERVL-MaLR	165703	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_54090	chr2	91660921	91661020	+	8.19458	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	187005	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95848	chr7	140340097	140340201	+	8.19458	NA	Intergenic	CpG	-32804	NM_052853	90956	Hs.744886	NM_052853	HPRD:10631	ADCK2	AARF	aarF domain containing kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_26864	chr12	123215258	123215496	+	8.19458	NA	promoter-TSS (NM_032554)	promoter-TSS (NM_032554)	-248	NM_032554	27198	Hs.610873	NM_032554		HCAR1	GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_2625	chr1	39581433	39581563	+	8.19458	NA	intron (NM_012090, intron 1 of 92)	L2c|LINE|L2	31659	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_92007	chr7	35841350	35841531	+	8.19458	NA	intron (NM_001788, intron 1 of 12)	CpG	844	NM_001011553	989	Hs.191346	NM_001788		SEPT7	CDC10|CDC3|NBLA02942|SEPT7A	septin 7	protein-coding
19-PTNLD28-TUMOR_peak_24082	chr12	49209235	49209397	+	8.18937	NA	promoter-TSS (NM_001206916)	promoter-TSS (NM_001206916)	-41	NM_001206916	784	Hs.250712	NM_000725	HPRD:11879	CACNB3	CAB3|CACNLB3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_70914	chr3	133195828	133195939	+	8.18937	NA	Intergenic	Intergenic	77044	NM_003571	8419	Hs.659862	NM_003571	HPRD:04444	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2, phakinin	protein-coding
19-PTNLD28-TUMOR_peak_771	chr1	11710617	11710800	+	8.18937	NA	exon (NM_012168, exon 2 of 6)	exon (NM_012168, exon 2 of 6)	-3724	NM_183412	93611	Hs.556006	NM_033182	HPRD:16445	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
19-PTNLD28-TUMOR_peak_61596	chr20	46997331	46997451	+	8.18663	NA	non-coding (NR_026958, exon 5 of 5)	non-coding (NR_026958, exon 5 of 5)	8737	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_16471	chr11	417101	417550	+	8.18663	NA	promoter-TSS (NM_021805)	promoter-TSS (NM_021805)	72	NM_021805	59307	Hs.501624	NM_021805	HPRD:12018	SIGIRR	TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding
19-PTNLD28-TUMOR_peak_20439	chr11	86269303	86269552	+	8.18578	NA	intron (NM_001014811, intron 2 of 13)	intron (NM_001014811, intron 2 of 13)	113813	NM_001014811	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_48316	chr19	24583226	24583316	+	8.18578	NA	Intergenic	ALR/Alpha|Satellite|centr	-237022	NR_003603	100101266	Hs.149312	NR_003603	ENSG00000268442	HAVCR1P1	-	hepatitis A virus cellular receptor 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_34357	chr15	72054073	72054322	+	8.18578	NA	intron (NM_001286429, intron 9 of 11)	intron (NM_001286429, intron 9 of 11)	-48691	NM_014249	10002	Hs.187354	NM_014249		NR2E3	ESCS|PNR|RNR|RP37|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding
19-PTNLD28-TUMOR_peak_4054	chr1	64279489	64279805	+	8.18578	NA	intron (NM_001083592, intron 1 of 6)	intron (NM_001083592, intron 1 of 6)	39957	NM_001083592	4919	Hs.128753	NM_005012	HPRD:03821	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_16012	chr10	123368199	123368327	+	8.18578	NA	Intergenic	CpG	-10291	NR_073009	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_71694	chr3	150139936	150140161	+	8.18578	NA	intron (NM_014779, intron 1 of 3)	intron (NM_014779, intron 1 of 3)	13260	NM_014779	9819	Hs.722470	NM_014779	HPRD:11101	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_45078	chr18	28636095	28636188	+	8.18578	NA	Intergenic	MER94|DNA|hAT-Blackjack	-13360	NM_024423	1825	Hs.41690	NM_001941	HPRD:02604	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
19-PTNLD28-TUMOR_peak_7619	chr1	160696382	160696624	+	8.18578	NA	Intergenic	LTR36|LTR|ERV1	-12344	NM_001282592	57823	Hs.517265	NM_021181	HPRD:09432	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
19-PTNLD28-TUMOR_peak_90480	chr6	166756319	166756656	+	8.18578	NA	promoter-TSS (NM_145169)	promoter-TSS (NM_145169)	368	NR_040022	100289495		NR_040022		LOC100289495	-	uncharacterized LOC100289495	ncRNA
19-PTNLD28-TUMOR_peak_71034	chr3	135100316	135100521	+	8.18578	NA	Intergenic	AluJb|SINE|Alu	-584097	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_96131	chr7	145812977	145813343	+	8.18578	NA	promoter-TSS (NM_014141)	promoter-TSS (NM_014141)	-293	NM_014141	26047	Hs.655684	NM_014141	HPRD:05197	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_97132	chr8	10682015	10682259	+	8.18578	NA	TTS (NR_031711)	TTS (NR_031711)	816	NR_031711	100302166		NR_031711		MIR1322	MIRN1322|hsa-mir-1322	microRNA 1322	ncRNA
19-PTNLD28-TUMOR_peak_7887	chr1	165205198	165205362	+	8.18578	NA	intron (NM_177398, intron 4 of 8)	CpG	120198	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_21834	chr11	123848791	123848946	+	8.18578	NA	promoter-TSS (NM_001004474)	promoter-TSS (NM_001004474)	-470	NM_001004474	219873	Hs.553637	NM_001004474	HPRD:17675	OR10S1	OR11-279	olfactory receptor, family 10, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_13520	chr10	49999677	49999783	+	8.18578	NA	intron (NM_020945, intron 23 of 61)	intron (NM_020945, intron 23 of 61)	106212	NM_020945	57705	Hs.287379	NM_020945	ENSG00000128815	WDFY4	C10orf64	WDFY family member 4	protein-coding
19-PTNLD28-TUMOR_peak_44719	chr18	13641624	13641758	+	8.18578	NA	promoter-TSS (NM_001276251)	promoter-TSS (NM_001276251)	-66	NM_001276251	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_28995	chr13	108578827	108579059	+	8.18578	NA	Intergenic	L1PA2|LINE|L1	-59483	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155, member A	protein-coding
19-PTNLD28-TUMOR_peak_1185	chr1	18807367	18807489	+	8.18578	NA	promoter-TSS (NM_152375)	promoter-TSS (NM_152375)	4	NM_152375	127707	Hs.406913	NM_152375	HPRD:08246	KLHDC7A	-	kelch domain containing 7A	protein-coding
19-PTNLD28-TUMOR_peak_14875	chr10	92728928	92729083	+	8.18578	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-47973	NM_014391	27063	Hs.448589	NM_014391	HPRD:10647	ANKRD1	ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2	ankyrin repeat domain 1 (cardiac muscle)	protein-coding
19-PTNLD28-TUMOR_peak_11397	chr1	244436451	244436558	+	8.18578	NA	Intergenic	Intergenic	-79433	NM_001276349	200159	Hs.442703	NM_001012970	HPRD:13168	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
19-PTNLD28-TUMOR_peak_79783	chr5	49439431	49439528	+	8.18568	NA	Intergenic	ALR/Alpha|Satellite|centr	297755	NM_198449	133418	Hs.561411	NM_198449	HPRD:13271	EMB	GP70	embigin	protein-coding
19-PTNLD28-TUMOR_peak_6692	chr1	150535552	150535698	+	8.18538	NA	non-coding (NR_104133, exon 3 of 4)	non-coding (NR_104133, exon 3 of 4)	11220	NR_036211	100422997		NR_036211	miRBase:MI0015856	MIR4257	-	microRNA 4257	ncRNA
19-PTNLD28-TUMOR_peak_106746	chr9	139378154	139378627	+	8.18455	NA	promoter-TSS (NM_014866)	promoter-TSS (NM_014866)	-179	NM_001276418	9919	Hs.522500	NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_12355	chr10	22614622	22614870	+	8.18243	NA	intron (NM_005180, intron 1 of 9)	CpG	4607	NM_005180	648	Hs.380403	NM_005180	HPRD:01277	BMI1	FLVI2/BMI1|PCGF4|RNF51	BMI1 proto-oncogene, polycomb ring finger	protein-coding
19-PTNLD28-TUMOR_peak_5289	chr1	108231964	108232059	+	8.18243	NA	promoter-TSS (NM_001079874)	promoter-TSS (NM_001079874)	-885	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_67516	chr3	36986456	36986612	+	8.18243	NA	promoter-TSS (NM_014831)	promoter-TSS (NM_014831)	14	NM_014831	9881	Hs.170999	NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_46403	chr18	77329825	77329944	+	8.18243	NA	Intergenic	Intergenic	-109917	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_51281	chr2	15941121	15941263	+	8.18243	NA	Intergenic	Intergenic	110286	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LOC101926966	-	uncharacterized LOC101926966	ncRNA
19-PTNLD28-TUMOR_peak_46650	chr19	2328556	2328688	+	8.18243	NA	promoter-TSS (NM_016199)	promoter-TSS (NM_016199)	-7	NM_001077238	56928	Hs.744026	NM_152988		SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
19-PTNLD28-TUMOR_peak_90655	chr6	170440167	170440335	+	8.18243	NA	Intergenic	Intergenic	131406	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
19-PTNLD28-TUMOR_peak_105402	chr9	113525115	113525306	+	8.18243	NA	intron (NM_001166281, intron 7 of 11)	L1MA8|LINE|L1	94159	NM_001166280	4593	Hs.521653	NM_005592	HPRD:03190	MUSK	-	muscle, skeletal, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_63651	chr21	42624282	42624459	+	8.18243	NA	intron (NM_138992, intron 7 of 7)	intron (NM_138992, intron 7 of 7)	-64291	NM_058186	54097	Hs.473877	NM_058186		FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER	family with sequence similarity 3, member B	protein-coding
19-PTNLD28-TUMOR_peak_3571	chr1	53859048	53859290	+	8.18243	NA	Intergenic	Intergenic	46524	NR_002314	163742	Hs.99394	NR_002314	ENSG00000236253	SLC25A3P1	-	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_16218	chr10	128593887	128594031	+	8.18243	NA	promoter-TSS (NM_001290223)	promoter-TSS (NM_001290223)	-19	NM_001290223	1793	Hs.159195	NM_001380	HPRD:03240	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
19-PTNLD28-TUMOR_peak_77588	chr4	152329254	152329397	+	8.18121	NA	Intergenic	Intergenic	-1073	NM_001109977	729830	Hs.633810	NM_001109977	ENSG00000164142	FAM160A1	-	family with sequence similarity 160, member A1	protein-coding
19-PTNLD28-TUMOR_peak_39102	chr16	84667408	84667510	+	8.18061	NA	Intergenic	LTR33|LTR|ERVL	-14672	NM_024731	79786	Hs.222731	NM_024731	HPRD:12675	KLHL36	C16orf44	kelch-like family member 36	protein-coding
19-PTNLD28-TUMOR_peak_90828	chr7	1471676	1471817	+	8.18061	NA	Intergenic	Intergenic	27363	NM_182924	79778	Hs.376617	NM_024723	HPRD:11364	MICALL2	JRAB|MICAL-L2	MICAL-like 2	protein-coding
19-PTNLD28-TUMOR_peak_100555	chr8	124731956	124732433	+	8.18061	NA	intron (NM_004306, intron 1 of 10)	MIRb|SINE|MIR	17453	NM_001003954	312	Hs.181107	NM_004306	HPRD:03984	ANXA13	ANX13|ISA	annexin A13	protein-coding
19-PTNLD28-TUMOR_peak_36541	chr16	16238332	16238602	+	8.18061	NA	Intergenic	Intergenic	78861	NM_001171	368	Hs.442182	NM_001171	HPRD:04453	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding
19-PTNLD28-TUMOR_peak_1756	chr1	27627445	27627546	+	8.18061	NA	intron (NM_001276252, intron 12 of 15)	intron (NM_001276252, intron 12 of 15)	-21141	NM_032125	84065	Hs.469171	NM_032125	HPRD:13167	TMEM222	C1orf160	transmembrane protein 222	protein-coding
19-PTNLD28-TUMOR_peak_9898	chr1	210057800	210057928	+	8.18061	NA	Intergenic	Intergenic	-53655	NM_153262	255928	Hs.658866	NM_153262	HPRD:11617	SYT14	SCAR11|sytXIV	synaptotagmin XIV	protein-coding
19-PTNLD28-TUMOR_peak_10162	chr1	221079933	221080125	+	8.18061	NA	Intergenic	Intergenic	-26547	NR_046901	100873924	Hs.645593	NR_046901		HLX-AS1	-	HLX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_68380	chr3	53144327	53144442	+	8.18061	NA	intron (NM_052859, intron 7 of 12)	L2c|LINE|L2	20086	NM_052859	91869	Hs.631910	NM_052859	HPRD:15239	RFT1	CDG1N	RFT1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_105337	chr9	112365417	112365698	+	8.18061	NA	Intergenic	LTR78|LTR|ERV1	-37511	NM_001037293	114299	Hs.591908	NM_053016	HPRD:17817	PALM2	AKAP2	paralemmin 2	protein-coding
19-PTNLD28-TUMOR_peak_98012	chr8	30013456	30013574	+	8.18061	NA	promoter-TSS (NM_006571)	promoter-TSS (NM_006571)	-298	NM_006571	10671	Hs.158427	NM_006571	HPRD:09907	DCTN6	WS-3|WS3|p27	dynactin 6	protein-coding
19-PTNLD28-TUMOR_peak_7149	chr1	155035119	155035466	+	8.17773	NA	promoter-TSS (NM_005227)	promoter-TSS (NM_005227)	-921	NM_182690	1945	Hs.449913	NM_005227	HPRD:03224	EFNA4	EFL4|EPLG4|LERK4	ephrin-A4	protein-coding
19-PTNLD28-TUMOR_peak_2621	chr1	39569444	39569651	+	8.17773	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	19708	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_8535	chr1	179785416	179785624	+	8.17734	NA	TTS (NM_173509)	TTS (NM_173509)	61421	NM_022347	163590	Hs.571797	NM_022347	HPRD:10048	TOR1AIP2	IFRG15|LULL1|NET9	torsin A interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23948	chr12	46765688	46765861	+	8.17717	NA	intron (NM_018976, intron 1 of 15)	CpG	871	NM_018976	54407	Hs.221847	NM_018976	HPRD:05535	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92296	chr7	44613075	44613319	+	8.17717	NA	exon (NM_001257189, exon 2 of 13)	exon (NM_001257189, exon 2 of 13)	940	NM_019082	54606	Hs.654762	NM_019082	HPRD:12154	DDX56	DDX21|DDX26|NOH61	DEAD (Asp-Glu-Ala-Asp) box helicase 56	protein-coding
19-PTNLD28-TUMOR_peak_91715	chr7	26241026	26241168	+	8.17717	NA	promoter-TSS (NM_002137)	promoter-TSS (NM_002137)	-227	NM_016587	11335	Hs.381189	NM_007276	HPRD:05130	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma	chromobox homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_57124	chr2	177013020	177013299	+	8.17717	NA	Intergenic	Intergenic	-1872	NR_029609	406903		NR_029609	miRBase:MI0000267	MIR10B	MIRN10B|hsa-mir-10b|miRNA10B|mir-10b	microRNA 10b	ncRNA
19-PTNLD28-TUMOR_peak_45204	chr18	33036256	33036366	+	8.17717	NA	Intergenic	Intergenic	41644	NM_001098817	125476	Hs.464903	NM_194281	HPRD:10719	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
19-PTNLD28-TUMOR_peak_9590	chr1	205141986	205142097	+	8.17717	NA	intron (NM_199462, intron 2 of 11)	intron (NM_199462, intron 2 of 11)	38686	NM_015375	25778	Hs.6874	NM_015375	HPRD:11495	DSTYK	CAKUT1|DustyPK|RIP5|RIPK5	dual serine/threonine and tyrosine protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_3937	chr1	61751205	61751336	+	8.17644	NA	intron (NM_001145511, intron 3 of 10)	intron (NM_001145511, intron 3 of 10)	-32080	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46606	chr19	1811548	1811702	+	8.17644	NA	exon (NM_138813, exon 2 of 29)	exon (NM_138813, exon 2 of 29)	611	NM_001178002	148229	Hs.306212	NM_138813	HPRD:05793	ATP8B3	ATPIK	ATPase, aminophospholipid transporter, class I, type 8B, member 3	protein-coding
19-PTNLD28-TUMOR_peak_8613	chr1	181117767	181118012	+	8.17644	NA	Intergenic	MER77B|LTR|ERVL	60251	NM_016545	51278	Hs.15725	NM_016545	HPRD:06210	IER5	SBBI48	immediate early response 5	protein-coding
19-PTNLD28-TUMOR_peak_96250	chr7	149807519	149807890	+	8.17640	NA	Intergenic	Intergenic	192365	NM_001164459	653857	Hs.664579	NM_001164458	ENSG00000106526	ACTR3C	ARP11	ARP3 actin-related protein 3 homolog C (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_21949	chr11	126236967	126237185	+	8.16707	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	11287	NM_006278	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_30971	chr14	69171904	69172065	+	8.16707	NA	Intergenic	Intergenic	88647	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_9658	chr1	205571390	205571486	+	8.16707	NA	3' UTR (NM_181644, exon 10 of 10)	3' UTR (NM_181644, exon 10 of 10)	30562	NM_001973	2005	Hs.497520	NM_001973	HPRD:02592	ELK4	SAP1	ELK4, ETS-domain protein (SRF accessory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_68170	chr3	49943836	49943962	+	8.16515	NA	Intergenic	Intergenic	-2593	NM_002447	4486	Hs.517973	NM_002447	HPRD:02545	MST1R	CD136|CDw136|PTK8|RON	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_20070	chr11	75172448	75172553	+	8.16515	NA	intron (NM_030792, intron 4 of 16)	intron (NM_030792, intron 4 of 16)	-30826	NM_001039548	283212	Hs.292451	NM_173583	HPRD:08747	KLHL35	-	kelch-like family member 35	protein-coding
19-PTNLD28-TUMOR_peak_64249	chr22	18404733	18405051	+	8.16432	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-15240	NM_001136004	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_39272	chr16	87498422	87498555	+	8.16432	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	26972	NM_015144	23174	Hs.156231	NM_015144	HPRD:18316	ZCCHC14	BDG-29|BDG29	zinc finger, CCHC domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_2813	chr1	41707035	41707212	+	8.16432	NA	intron (NM_001172218, intron 1 of 15)	CpG	692	NM_001172218	22955	Hs.571874	NM_012236	HPRD:11540	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_97356	chr8	17780698	17781020	+	8.16323	NA	intron (NM_006197, intron 1 of 38)	CpG	493	NM_006197	5108	Hs.491148	NM_006197	HPRD:02624	PCM1	PTC4	pericentriolar material 1	protein-coding
19-PTNLD28-TUMOR_peak_64049	chr21	46826206	46826423	+	8.16107	NA	TTS (NR_052004)	TTS (NR_052004)	1217	NM_130445	80781	Hs.517356	NM_030582	HPRD:00382	COL18A1	KNO|KNO1|KS	collagen, type XVIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_62490	chr20	60944131	60944522	+	8.15994	NA	Intergenic	Intergenic	-1958	NM_005560	3911	Hs.473256	NM_005560	HPRD:03020	LAMA5	-	laminin, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_26792	chr12	122240859	122241090	+	8.15802	NA	non-coding (NR_002809, exon 1 of 7)	non-coding (NR_002809, exon 1 of 7)	416	NR_002809	338799	Hs.524804	NR_002809	ENSG00000212694	LINC01089	-	long intergenic non-protein coding RNA 1089	ncRNA
19-PTNLD28-TUMOR_peak_24104	chr12	49454562	49454893	+	8.15269	NA	Intergenic	CpG	-5620	NM_003482	8085	Hs.731384	NM_003482	HPRD:03664	KMT2D	AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine (K)-specific methyltransferase 2D	protein-coding
19-PTNLD28-TUMOR_peak_40002	chr17	7589319	7589557	+	8.15157	NA	promoter-TSS (NM_001143990)	promoter-TSS (NM_001143990)	49	NM_001143990	55135	Hs.408312	NM_018081	HPRD:07670	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing, antisense to TP53	protein-coding
19-PTNLD28-TUMOR_peak_48113	chr19	19007374	19007634	+	8.15157	NA	promoter-TSS (NM_021267)	promoter-TSS (NM_021267)	32	NM_001290265	10715	Hs.412355	NM_021267	HPRD:12114	CERS1	LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_102911	chr9	35947533	35947696	+	8.15157	NA	Intergenic	AluJb|SINE|Alu	10537	NM_019897	56656	Hs.553540	NM_019897	HPRD:17704	OR2S2	OR37A|OST715	olfactory receptor, family 2, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_755	chr1	11381839	11381953	+	8.15157	NA	Intergenic	Intergenic	48641	NM_013319	29914	Hs.522933	NM_013319	HPRD:15487	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_14187	chr10	73019810	73020124	+	8.15120	NA	intron (NM_001244889, intron 1 of 15)	intron (NM_001244889, intron 1 of 15)	-41982	NR_038453	728978	Hs.646725	NR_038453	ENSG00000237512	UNC5B-AS1	-	UNC5B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37881	chr16	54076044	54076133	+	8.14810	NA	intron (NM_001080432, intron 8 of 8)	L1HS|LINE|L1	2783	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_76102	chr4	86070929	86071065	+	8.14810	NA	Intergenic	Intergenic	183026	NR_015359	404201	Hs.720920	NM_205857	HPRD:13317	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_14385	chr10	76951884	76952214	+	8.14810	NA	Intergenic	Intergenic	-17863	NM_001184823	7417	Hs.355927	NM_003375	HPRD:01904	VDAC2	POR	voltage-dependent anion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_38350	chr16	67548312	67548457	+	8.14810	NA	Intergenic	AluJb|SINE|Alu	14264	NR_104656	100505942	Hs.121233	NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
19-PTNLD28-TUMOR_peak_17821	chr11	31847739	31847878	+	8.14810	NA	promoter-TSS (NR_117094)	promoter-TSS (NR_117094)	-306	NR_117094	103157000		NR_117094		PAUPAR	-	PAX6 upstream antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_259	chr1	2542594	2542850	+	8.14810	NA	exon (NM_033467, exon 4 of 24)	exon (NM_033467, exon 4 of 24)	21759	NM_033467	79258	Hs.591453	NM_033467	HPRD:07024	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metallo-endopeptidase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21017	chr11	108228174	108228263	+	8.14810	NA	intron (NM_000051, intron 61 of 62)	L1PA2|LINE|L1	110040	NM_152587	160140	Hs.653180	NM_152587	HPRD:14579	C11orf65	-	chromosome 11 open reading frame 65	protein-coding
19-PTNLD28-TUMOR_peak_92601	chr7	54614427	54614687	+	8.14810	NA	intron (NM_182546, intron 2 of 4)	CpG	4539	NM_182546	222008	Hs.335933	NM_182546		VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_4559	chr1	84764099	84764341	+	8.14810	NA	5' UTR (NM_001010971, exon 1 of 4)	5' UTR (NM_001010971, exon 1 of 4)	171	NM_001010971	148418	Hs.591445	NM_001010971	HPRD:17302	SAMD13	-	sterile alpha motif domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_30632	chr14	61224524	61224738	+	8.14810	NA	intron (NM_001177963, intron 1 of 6)	L2c|LINE|L2	23172	NM_002431	4331	Hs.509523	NM_002431	HPRD:04042	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT CDK-activating kinase assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_29415	chr14	22290293	22290524	+	8.14810	NA	Intergenic	Intergenic	157111	NM_001001912	26686	Hs.547982	NM_001001912	HPRD:11414	OR4E2	OR14-42	olfactory receptor, family 4, subfamily E, member 2	protein-coding
19-PTNLD28-TUMOR_peak_107568	chrX	13007094	13007301	+	8.14810	NA	Intergenic	Intergenic	13971	NM_021109	7114	Hs.437277	NM_021109	HPRD:02153	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_39244	chr16	86295925	86296029	+	8.14810	NA	intron (NR_104139, intron 3 of 5)	L1PA2|LINE|L1	23876	NR_104139	101154687	Hs.640512	NR_104139		LINC01081	TCONS00024764|TCONS_00024764	long intergenic non-protein coding RNA 1081	ncRNA
19-PTNLD28-TUMOR_peak_18914	chr11	61627659	61628066	+	8.14810	NA	intron (NM_004265, intron 7 of 11)	L2|LINE|L2	17888	NR_106804	102465446		NR_106804		MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
19-PTNLD28-TUMOR_peak_11243	chr1	239792610	239792790	+	8.14810	NA	5' UTR (NM_000740, exon 1 of 5)	5' UTR (NM_000740, exon 1 of 5)	327	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	cholinergic receptor, muscarinic 3	protein-coding
19-PTNLD28-TUMOR_peak_88300	chr6	73665528	73665647	+	8.14810	NA	intron (NM_001160133, intron 1 of 14)	AluSx3|SINE|Alu	11889	NR_036244	100423005		NR_036244	miRBase:MI0015890	MIR4282	-	microRNA 4282	ncRNA
19-PTNLD28-TUMOR_peak_74565	chr4	13702344	13702519	+	8.14810	NA	intron (NR_121681, intron 2 of 3)	L1PREC2|LINE|L1	45628	NR_121681	101929071	Hs.543714	NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
19-PTNLD28-TUMOR_peak_36299	chr16	11473378	11473584	+	8.14810	NA	Intergenic	Intergenic	34170	NM_152308	116028	Hs.347524	NM_152308	HPRD:14497	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19-PTNLD28-TUMOR_peak_95541	chr7	134959368	134959616	+	8.14810	NA	Intergenic	Intergenic	42761	NM_182489	346673	Hs.592279	NM_182489	HPRD:18123	STRA8	-	stimulated by retinoic acid 8	protein-coding
19-PTNLD28-TUMOR_peak_10055	chr1	215741056	215741185	+	8.14810	NA	intron (NM_016121, intron 1 of 17)	CpG	385	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_102307	chr9	16371452	16371577	+	8.14810	NA	Intergenic	Intergenic	-95203	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_85066	chr6	6293657	6293861	+	8.14810	NA	intron (NM_000129, intron 3 of 14)	intron (NM_000129, intron 3 of 14)	27165	NM_000129	2162	Hs.335513	NM_000129	HPRD:00604	F13A1	F13A	coagulation factor XIII, A1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_29864	chr14	34966259	34966453	+	8.14810	NA	Intergenic	Intergenic	-34888	NM_138288	171546	Hs.740577	NM_138288	HPRD:16610	SPTSSA	C14orf147|SSSPTA	serine palmitoyltransferase, small subunit A	protein-coding
19-PTNLD28-TUMOR_peak_8522	chr1	179520572	179520724	+	8.14810	NA	intron (NM_014625, intron 7 of 7)	intron (NM_014625, intron 7 of 7)	24439	NM_014625	7827	Hs.412710	NM_014625	HPRD:05303	NPHS2	PDCN|SRN1	nephrosis 2, idiopathic, steroid-resistant (podocin)	protein-coding
19-PTNLD28-TUMOR_peak_56790	chr2	166659690	166659874	+	8.14810	NA	Intergenic	Intergenic	-8979	NM_004482	2591	Hs.170986	NM_004482	HPRD:03453	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_1618	chr1	26063707	26063916	+	8.14810	NA	intron (NM_001289010, intron 2 of 11)	intron (NM_001289010, intron 2 of 11)	-62856	NM_020451	57190	Hs.323396	NM_020451	HPRD:05867	SEPN1	CFTD|MDRS1|RSMD1|RSS|SELN	selenoprotein N, 1	protein-coding
19-PTNLD28-TUMOR_peak_80180	chr5	60899451	60899567	+	8.14701	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-34127	NM_173667	285668	Hs.683866	NM_173667	HPRD:09962	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_95911	chr7	141620207	141620383	+	8.14701	NA	TTS (NM_001001656)	TTS (NM_001001656)	1619	NM_001001656	130075	Hs.690171	NM_001001656	HPRD:17797	OR9A4	-	olfactory receptor, family 9, subfamily A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_87896	chr6	49519077	49519204	+	8.14701	NA	exon (NM_001145652, exon 1 of 1)	exon (NM_001145652, exon 1 of 1)	1027	NM_001145652	135398	Hs.722010	NM_153344	HPRD:12852	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_108611	chrX	68053908	68054049	+	8.14701	NA	intron (NM_004429, intron 1 of 4)	intron (NM_004429, intron 1 of 4)	5138	NM_004429	1947	Hs.144700	NM_004429	HPRD:02072	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin-B1	protein-coding
19-PTNLD28-TUMOR_peak_97335	chr8	17488621	17488718	+	8.14701	NA	intron (NM_006207, intron 5 of 6)	intron (NM_006207, intron 5 of 6)	54727	NM_006207	5157	Hs.458573	NM_006207	HPRD:05206	PDGFRL	PDGRL|PRLTS	platelet-derived growth factor receptor-like	protein-coding
19-PTNLD28-TUMOR_peak_15410	chr10	105210904	105211287	+	8.14605	NA	intron (NM_015916, intron 1 of 3)	intron (NM_015916, intron 1 of 3)	1067	NR_024552	51063	Hs.241545	NM_015916	HPRD:13301	CALHM2	FAM26B	calcium homeostasis modulator 2	protein-coding
19-PTNLD28-TUMOR_peak_97514	chr8	21601787	21601952	+	8.14605	NA	intron (NM_001165038, intron 3 of 7)	intron (NM_001165038, intron 3 of 7)	44477	NM_001495	2675	Hs.441202	NM_001495	HPRD:11801	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_14924	chr10	94334198	94334384	+	8.14605	NA	promoter-TSS (NM_004969)	promoter-TSS (NM_004969)	-439	NM_004969	3416	Hs.500546	NM_004969	HPRD:00894	IDE	INSULYSIN	insulin-degrading enzyme	protein-coding
19-PTNLD28-TUMOR_peak_98379	chr8	41015012	41015127	+	8.14605	NA	Intergenic	Intergenic	151921	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100801	chr8	128522177	128522621	+	8.14605	NA	Intergenic	MIRb|SINE|MIR	-28015	NR_117100	727677	Hs.673248	NR_024393	ENSG00000246228	CASC8	CARLo-1|LINC00860	cancer susceptibility candidate 8 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_54945	chr2	112103798	112104024	+	8.14605	NA	Intergenic	Intergenic	-25243	NR_039634	100616499		NR_039634	miRBase:MI0016775	MIR4435-1	-	microRNA 4435-1	ncRNA
19-PTNLD28-TUMOR_peak_78703	chr5	1794737	1794913	+	8.14605	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	5131	NM_032479	64979	Hs.719465	NM_032479	HPRD:14756	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
19-PTNLD28-TUMOR_peak_8722	chr1	183118594	183119091	+	8.14605	NA	Intergenic	(CACAC)n|Simple_repeat|Simple_repeat	-36332	NM_005562	3918	Hs.591484	NM_005562	HPRD:01031	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_97197	chr8	12036530	12036662	+	8.14605	NA	Intergenic	Intergenic	-1820	NR_046354	729689	Hs.741074	NR_046354		FAM90A2P	-	family with sequence similarity 90, member A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_94006	chr7	94537433	94537716	+	8.14605	NA	intron (NM_017650, intron 1 of 15)	intron (NM_017650, intron 1 of 15)	625	NM_017650	55607	Hs.21816	NM_017650	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	protein phosphatase 1, regulatory subunit 9A	protein-coding
19-PTNLD28-TUMOR_peak_33219	chr15	41165934	41166191	+	8.14509	NA	intron (NM_133639, intron 1 of 2)	CpG-7778	425	NM_133639	171177	Hs.447901	NM_133639	HPRD:10191	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
19-PTNLD28-TUMOR_peak_49321	chr19	45194886	45195109	+	8.14509	NA	Intergenic	AluJr|SINE|Alu	-7424	NM_001039213	388551	Hs.456381	NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding
19-PTNLD28-TUMOR_peak_35299	chr15	93180191	93180490	+	8.14509	NA	intron (NM_207446, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	18691	NM_207446	400451	Hs.27373	NM_207446	HPRD:14220	FAM174B	-	family with sequence similarity 174, member B	protein-coding
19-PTNLD28-TUMOR_peak_104705	chr9	97431760	97432036	+	8.14509	NA	Intergenic	AluY|SINE|Alu	-29367	NM_001127628	2203	Hs.494496	NM_000507	HPRD:01973	FBP1	FBP	fructose-1,6-bisphosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_1990	chr1	31200800	31200917	+	8.14509	NA	Intergenic	Intergenic	-4426	NM_002379	4146	Hs.150366	NM_002379	HPRD:00276	MATN1	CMP|CRTM	matrilin 1, cartilage matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_92891	chr7	65099038	65099211	+	8.14509	NA	intron (NR_038378, intron 8 of 9)	intron (NR_038378, intron 8 of 9)	-13643	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
19-PTNLD28-TUMOR_peak_12279	chr10	20121648	20121769	+	8.14509	NA	intron (NM_001282736, intron 1 of 12)	intron (NM_001282736, intron 1 of 12)	16336	NM_032812	84898	Hs.99472	NM_032812	HPRD:08440	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25009	chr12	65174786	65175170	+	8.14509	NA	Intergenic	CpG	-21752	NM_002076	2799	Hs.334534	NM_002076	HPRD:09637	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_81065	chr5	88076620	88076751	+	8.14509	NA	intron (NM_001193347, intron 4 of 11)	CT-rich|Low_complexity|Low_complexity	43059	NM_001193349	4208	Hs.649965	NM_002397	HPRD:02809	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding
19-PTNLD28-TUMOR_peak_94483	chr7	101773436	101773577	+	8.14509	NA	intron (NM_181552, intron 8 of 23)	intron (NM_181552, intron 8 of 23)	-154847	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_62225	chr20	55549576	55549734	+	8.14509	NA	Intergenic	Intergenic	-239097	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55944	chr2	136830332	136830557	+	8.14509	NA	Intergenic	HERVK3-int|LTR|ERVK	43369	NM_001008540	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_12491	chr10	25247132	25247249	+	8.14509	NA	Intergenic	Intergenic	-5617	NM_001282786	56952	Hs.405619	NM_020200	HPRD:17917	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_17372	chr11	14522023	14522149	+	8.14509	NA	promoter-TSS (NM_016451)	promoter-TSS (NM_016451)	-645	NM_001144061	1315	Hs.339278	NM_016451	HPRD:02981	COPB1	COPB	coatomer protein complex, subunit beta 1	protein-coding
19-PTNLD28-TUMOR_peak_97550	chr8	21987562	21987676	+	8.14427	NA	intron (NM_018411, intron 1 of 17)	CpG	946	NM_018411	55806	Hs.272367	NM_005144	HPRD:03808	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	hair growth associated	protein-coding
19-PTNLD28-TUMOR_peak_49103	chr19	41169928	41170039	+	8.14393	NA	Intergenic	L2b|LINE|L2	26044	NM_001289980	9253	Hs.326953	NM_004756		NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	numb homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_83989	chr5	172158497	172158629	+	8.14376	NA	Intergenic	Intergenic	-23943	NM_001287812	101928093	Hs.646902	NM_001287812		LOC101928093	-	uncharacterized LOC101928093	protein-coding
19-PTNLD28-TUMOR_peak_71192	chr3	138617947	138618047	+	8.14376	NA	Intergenic	AluJb|SINE|Alu	44865	NR_121649	103344930	Hs.195033	NR_121649		LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
19-PTNLD28-TUMOR_peak_9317	chr1	202162824	202163106	+	8.14376	NA	promoter-TSS (NM_001017403)	promoter-TSS (NM_001017403)	-153	NM_001017403	59352	Hs.497402	NM_021636	HPRD:05974	LGR6	GPCR|VTS20631	leucine-rich repeat containing G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_63718	chr21	43429587	43429697	+	8.14376	NA	non-coding (NR_119384, exon 1 of 2)	non-coding (NR_119384, exon 1 of 2)	339	NR_119384	150142	Hs.143833	NM_198078		ZNF295-AS1	C21orf121|NCRNA00318	ZNF295 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44033	chr17	79917654	79917853	+	8.14362	NA	intron (NM_178493, intron 1 of 10)	CpG-11382	1304	NM_178493	147111	Hs.106137	NM_178493	HPRD:14073	NOTUM	-	notum pectinacetylesterase homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_70338	chr3	124526884	124527069	+	8.14362	NA	intron (NM_002213, intron 9 of 14)	L3|LINE|CR1	77763	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_9326	chr1	202210601	202210794	+	8.14362	NA	intron (NM_001017404, intron 4 of 15)	intron (NM_001017404, intron 4 of 15)	27414	NM_001017404	59352	Hs.497402	NM_021636	HPRD:05974	LGR6	GPCR|VTS20631	leucine-rich repeat containing G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_87670	chr6	44153174	44153407	+	8.14362	NA	Intergenic	LTR10F|LTR|ERV1	26742	NM_007058	11131	Hs.225953	NM_007058	HPRD:05315	CAPN11	calpain11	calpain 11	protein-coding
19-PTNLD28-TUMOR_peak_11298	chr1	241720977	241721106	+	8.14362	NA	intron (NM_003679, intron 5 of 14)	FRAM|SINE|Alu	25607	NM_003679	8564	Hs.731056	NM_003679	HPRD:04642	KMO	dJ317G22.1	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding
19-PTNLD28-TUMOR_peak_75383	chr4	56224958	56225070	+	8.14362	NA	intron (NM_024592, intron 1 of 4)	intron (NM_024592, intron 1 of 4)	12626	NM_024592	79644	Hs.39311	NM_024592	HPRD:07825	SRD5A3	CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
19-PTNLD28-TUMOR_peak_60991	chr20	37484102	37484334	+	8.14362	NA	intron (NM_015568, intron 2 of 10)	intron (NM_015568, intron 2 of 10)	49870	NM_001172735	26051	Hs.45719	NM_015568	HPRD:15168	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1, regulatory subunit 16B	protein-coding
19-PTNLD28-TUMOR_peak_39258	chr16	87273835	87274057	+	8.14362	NA	Intergenic	LTR37A|LTR|ERV1	28225	NR_110939	101928708	Hs.585717	NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
19-PTNLD28-TUMOR_peak_70339	chr3	124531763	124531871	+	8.14362	NA	intron (NM_002213, intron 8 of 14)	intron (NM_002213, intron 8 of 14)	74327	NM_002213	3693	Hs.536663	NM_002213	HPRD:00949	ITGB5	-	integrin, beta 5	protein-coding
19-PTNLD28-TUMOR_peak_67087	chr3	21296697	21296816	+	8.14362	NA	Intergenic	L1PA2|LINE|L1	-150462	NR_002311	391518	Hs.543226	NR_002311	ENSG00000236380	VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_10125	chr1	220101484	220101665	+	8.14362	NA	non-coding (NR_046437, exon 1 of 4)	non-coding (NR_046437, exon 1 of 4)	419	NM_018713	55532	Hs.284450	NM_018713		SLC30A10	HMDPC|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30, member 10	protein-coding
19-PTNLD28-TUMOR_peak_102193	chr9	13038253	13038489	+	8.14362	NA	Intergenic	L1PA2|LINE|L1	-223983	NR_125775	101929467	Hs.586443	NR_125775		LURAP1L-AS1	-	LURAP1L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86331	chr6	28625954	28626064	+	8.14362	NA	Intergenic	Intergenic	-70897	NM_052923	114821	Hs.176980	NM_052923	HPRD:11720	ZBED9	Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	zinc finger, BED-type containing 9	protein-coding
19-PTNLD28-TUMOR_peak_79888	chr5	54036174	54036298	+	8.14001	NA	intron (NR_104658, intron 1 of 2)	L2c|LINE|L2	3850	NR_104658	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_43610	chr17	74965588	74965748	+	8.14001	NA	Intergenic	Intergenic	96939	NM_198955	146664	Hs.144531	NM_144677	HPRD:14392	MGAT5B	GnT-IX|GnT-VB	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_36265	chr16	10977056	10977187	+	8.14001	NA	intron (NR_104444, intron 1 of 17)	intron (NR_104444, intron 1 of 17)	6066	NM_001286403	4261	Hs.701991	NM_000246	HPRD:02475	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II, major histocompatibility complex, transactivator	protein-coding
19-PTNLD28-TUMOR_peak_7688	chr1	161417271	161417473	+	8.13800	NA	Intergenic	CpG	-57833	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_66263	chr3	4867710	4868040	+	8.13280	NA	intron (NM_001168272, intron 59 of 60)	intron (NM_001168272, intron 59 of 60)	-72035	NR_037903	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26501	chr12	117318880	117319020	+	8.13262	NA	exon (NM_003806, exon 1 of 2)	exon (NM_003806, exon 1 of 2)	282	NR_073189	8739	Hs.87247	NM_003806		HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_78314	chr4	185654483	185654701	+	8.12985	NA	intron (NR_104593, intron 1 of 11)	CpG	694	NR_104593	79682	Hs.575032	NM_024629	HPRD:14722	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
19-PTNLD28-TUMOR_peak_4132	chr1	65889725	65889839	+	8.12904	NA	intron (NM_001198681, intron 2 of 4)	MIRb|SINE|MIR	3383	NM_001198681	54741	Hs.23581	NM_017526	HPRD:13987	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
19-PTNLD28-TUMOR_peak_22736	chr12	6419542	6420251	+	8.12904	NA	promoter-TSS (NM_001144856)	promoter-TSS (NM_001144856)	-203	NM_001144856	55200	Hs.631660	NM_018173	HPRD:07692	PLEKHG6	MyoGEF	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding
19-PTNLD28-TUMOR_peak_24015	chr12	48149483	48149704	+	8.12748	NA	intron (NM_001098531, intron 2 of 27)	intron (NM_001098531, intron 2 of 27)	2588	NM_001098532	10411	Hs.8578	NM_006105	HPRD:06928	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_25702	chr12	96609134	96609235	+	8.12684	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	20977	NM_005230	2004	Hs.46523	NM_005230		ELK3	ERP|NET|SAP2	ELK3, ETS-domain protein (SRF accessory protein 2)	protein-coding
19-PTNLD28-TUMOR_peak_72401	chr3	172427855	172428190	+	8.12684	NA	intron (NM_020792, intron 1 of 4)	intron (NM_020792, intron 1 of 4)	986	NM_001146278	57552	Hs.444099	NM_020792	HPRD:07489	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_2115	chr1	32671833	32671955	+	8.12393	NA	TTS (NM_024296)	TTS (NM_024296)	658	NM_018134	55721	Hs.274356	NM_018134	HPRD:07683	IQCC	-	IQ motif containing C	protein-coding
19-PTNLD28-TUMOR_peak_93138	chr7	72500217	72500379	+	8.12194	NA	promoter-TSS (NR_003664).3	promoter-TSS (NR_003664).3	11	NR_003664	728524	Hs.571275	NM_001023562	ENSG00000198305	SPDYE8P	-	speedy/RINGO cell cycle regulator family member E8, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_1127	chr1	17100319	17100429	+	8.12194	NA	Intergenic	Intergenic	-9399	NM_001271733	11223	Hs.349110	NM_001271733		MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1-like	protein-coding
19-PTNLD28-TUMOR_peak_45154	chr18	30487052	30487141	+	8.11589	NA	Intergenic	L2a|LINE|L2	-134122	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_55706	chr2	131186070	131186289	+	8.11371	NA	promoter-TSS (NR_046260)	promoter-TSS (NR_046260)	-60	NR_046258	100216479	Hs.131740	NR_046258		FAR2P2	-	fatty acyl CoA reductase 2 pseudogene 2	ncRNA
19-PTNLD28-TUMOR_peak_15487	chr10	106097889	106098069	+	8.11371	NA	intron (NM_001272013, intron 1 of 1)	CpG	272	NM_001272013	85450	Hs.523252	NM_033397		ITPRIP	DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_23573	chr12	29533540	29533853	+	8.11371	NA	intron (NM_016570, intron 1 of 13)	CpG	447	NM_016570	51290	Hs.339453	NM_016570		ERGIC2	Erv41|PTX1|cd002	ERGIC and golgi 2	protein-coding
19-PTNLD28-TUMOR_peak_1996	chr1	31255864	31255987	+	8.11371	NA	Intergenic	Intergenic	-25242	NM_006762	7805	Hs.371021	NM_006762	HPRD:03280	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
19-PTNLD28-TUMOR_peak_70184	chr3	122745725	122745861	+	8.11371	NA	intron (NR_046079, intron 1 of 22)	CpG	866	NM_001256348	54437	Hs.210870	NM_018987	HPRD:15322	SEMA5B	SEMAG|SemG	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding
19-PTNLD28-TUMOR_peak_20152	chr11	76327048	76327328	+	8.11371	NA	Intergenic	Intergenic	53856	NM_005512	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_55563	chr2	128284897	128285064	+	8.11351	NA	promoter-TSS (NM_017969)	promoter-TSS (NM_017969)	-893	NM_017969	55677	Hs.469879	NM_017969	HPRD:07639	IWS1	-	IWS1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_58831	chr2	232508015	232508203	+	8.11351	NA	Intergenic	Intergenic	50534	NM_152614	165100	Hs.98104	NM_152614	HPRD:14602	C2orf57	-	chromosome 2 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_17988	chr11	34360873	34361158	+	8.11236	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	18540	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_101042	chr8	132853741	132853864	+	8.11236	NA	Intergenic	Intergenic	-62554	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_77974	chr4	169405875	169406126	+	8.11236	NA	Intergenic	L2|LINE|L2	-4335	NM_001012967	91351	Hs.535011	NM_001012967	ENSG00000181381	DDX60L	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	protein-coding
19-PTNLD28-TUMOR_peak_12588	chr10	28031222	28031406	+	8.11236	NA	intron (NM_173576, intron 2 of 6)	CpG-2675	-2230	NR_121652	101929202	Hs.568843	NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3677	chr1	55322205	55322315	+	8.11236	NA	intron (NM_014762, intron 6 of 8)	AluSx1|SINE|Alu	30661	NM_014762	1718	Hs.498727	NM_014762	HPRD:05916	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
19-PTNLD28-TUMOR_peak_1116	chr1	17035296	17035452	+	8.10956	NA	intron (NR_026567, intron 1 of 10)	L2b|LINE|L2	11278	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71233	chr3	139239330	139239489	+	8.10767	NA	intron (NM_002899, intron 2 of 3)	intron (NM_002899, intron 2 of 3)	19262	NM_002899	5947	Hs.529571	NM_002899	HPRD:07036	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1, cellular	protein-coding
19-PTNLD28-TUMOR_peak_4223	chr1	68166944	68167109	+	8.10767	NA	TTS (NM_018841)	TTS (NM_018841)	16166	NM_001924	1647	Hs.80409	NM_001924	HPRD:00528	GADD45A	DDIT1|GADD45	growth arrest and DNA-damage-inducible, alpha	protein-coding
19-PTNLD28-TUMOR_peak_32848	chr15	31306457	31306686	+	8.10767	NA	intron (NM_001252024, intron 27 of 27)	L1M4|LINE|L1	-22764	NM_017762	54893	Hs.30141	NM_017762	HPRD:07895	MTMR10	-	myotubularin related protein 10	protein-coding
19-PTNLD28-TUMOR_peak_107011	chrUn_gl000215	67648	67866	+	8.10767	NA	promoter-TSS (NR_107036)	promoter-TSS (NR_107036)	-757	NR_107036	102466252		NR_107036		MIR8069-1	MIR8069|hsa-mir-8069	microRNA 8069-1	ncRNA
19-PTNLD28-TUMOR_peak_80951	chr5	80543677	80543786	+	8.10767	NA	intron (NR_034122, intron 2 of 3)	intron (NR_034122, intron 2 of 3)	14592	NM_001099736	1160	Hs.80691	NM_001825	HPRD:00425	CKMT2	SMTCK	creatine kinase, mitochondrial 2 (sarcomeric)	protein-coding
19-PTNLD28-TUMOR_peak_32167	chr14	103486179	103486453	+	8.10767	NA	intron (NM_006035, intron 1 of 36)	intron (NM_006035, intron 1 of 36)	37426	NM_006035	9578	Hs.654634	NM_006035	HPRD:08516	CDC42BPB	MRCKB	CDC42 binding protein kinase beta (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_96621	chr7	155205381	155205611	+	8.10767	NA	Intergenic	Intergenic	-44868	NR_103545	338436	Hs.521326	NR_103545	ENSG00000204960	BLACE	-	B-cell acute lymphoblastic leukemia expressed	ncRNA
19-PTNLD28-TUMOR_peak_92357	chr7	45828008	45828149	+	8.10767	NA	Intergenic	AluJb|SINE|Alu	-19461	NR_024271	641977	Hs.723477	NR_024271	ENSG00000214765	SEPT7P2	SEPT13|SEPT7B	septin 7 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_33144	chr15	40385375	40385680	+	8.10767	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	12760	NM_001003942	90427	Hs.591104	NM_033503	HPRD:05881	BMF	-	Bcl2 modifying factor	protein-coding
19-PTNLD28-TUMOR_peak_97532	chr8	21881780	21882470	+	8.10767	NA	promoter-TSS (NM_182795)	promoter-TSS (NM_182795)	-229	NM_001286681	10361	Hs.131055	NM_182795	HPRD:12160	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
19-PTNLD28-TUMOR_peak_59101	chr2	238499698	238499825	+	8.10666	NA	promoter-TSS (NR_033308)	promoter-TSS (NR_033308)	8	NM_022449	64284	Hs.44278	NM_022449	HPRD:11468	RAB17	-	RAB17, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_48969	chr19	39571210	39571329	+	8.10666	NA	Intergenic	L1ME3B|LINE|L1	-3676	NM_001004318	390928	Hs.448934	NM_001004318	HPRD:13361	PAPL	-	iron/zinc purple acid phosphatase-like protein	protein-coding
19-PTNLD28-TUMOR_peak_106242	chr9	130890382	130890809	+	8.10666	NA	promoter-TSS (NR_024425)	promoter-TSS (NR_024425)	-128	NM_001256335	80142	Hs.495219	NM_025072	HPRD:07458	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_24817	chr12	58284367	58284523	+	8.10666	NA	Intergenic	Intergenic	-43698	NM_005730	10106	Hs.524530	NM_005730	HPRD:12281	CTDSP2	OS4|PSR2|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_76482	chr4	106392873	106392962	+	8.10666	NA	intron (NM_176866, intron 1 of 7)	intron (NM_176866, intron 1 of 7)	2310	NM_176866	27068	Hs.654957	NM_006903	HPRD:18494	PPA2	SID6-306	pyrophosphatase (inorganic) 2	protein-coding
19-PTNLD28-TUMOR_peak_76020	chr4	83933528	83933728	+	8.10376	NA	intron (NM_001115007, intron 1 of 12)	CpG	466	NM_001115007	132660	Hs.96952	NM_194282	HPRD:13218	LIN54	CXCDC1|JC8.6|MIP120	lin-54 DREAM MuvB core complex component	protein-coding
19-PTNLD28-TUMOR_peak_103948	chr9	78984548	78984819	+	8.10168	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	24761	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_78781	chr5	7850109	7850271	+	8.10168	NA	intron (NM_001089584, intron 1 of 2)	CpG	1413	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_24808	chr12	58238485	58238615	+	8.10168	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	2197	NM_005730	10106	Hs.524530	NM_005730	HPRD:12281	CTDSP2	OS4|PSR2|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_18843	chr11	61022035	61022177	+	8.10168	NA	Intergenic	LTR16C|LTR|ERVL	13477	NM_014224	5222	Hs.432854	NM_014224	HPRD:01356	PGA5	-	pepsinogen 5, group I (pepsinogen A)	protein-coding
19-PTNLD28-TUMOR_peak_16474	chr11	441946	442183	+	8.10168	NA	promoter-TSS (NM_001012302)	promoter-TSS (NM_001012302)	-53	NM_001012302	338440	Hs.501622	NM_001012302	HPRD:18214	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
19-PTNLD28-TUMOR_peak_2888	chr1	42383763	42384038	+	8.10102	NA	intron (NR_038260, intron 1 of 2)	CpG	478	NM_024503	59269	Hs.403972	NM_024503	HPRD:09442	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_39749	chr17	3598682	3598791	+	8.10102	NA	intron (NM_175080, intron 1 of 10)	intron (NM_175080, intron 1 of 10)	962	NM_001204520	5026	Hs.731607	NM_002561	HPRD:09110	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding
19-PTNLD28-TUMOR_peak_90305	chr6	159164443	159164545	+	8.10102	NA	intron (NM_001242395, intron 9 of 15)	intron (NM_001242395, intron 9 of 15)	21291	NR_037482	100500851		NR_037482	miRBase:MI0016424	MIR3918	-	microRNA 3918	ncRNA
19-PTNLD28-TUMOR_peak_45576	chr18	45624517	45624628	+	8.10102	NA	intron (NM_001039360, intron 1 of 2)	L2b|LINE|L2	39108	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19-PTNLD28-TUMOR_peak_19611	chr11	68637561	68637660	+	8.10102	NA	Intergenic	Intergenic	-28211	NM_001031847	1374	Hs.503043	NM_001876	HPRD:02755	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
19-PTNLD28-TUMOR_peak_35295	chr15	92664269	92664593	+	8.10102	NA	intron (NM_013272, intron 5 of 9)	intron (NM_013272, intron 5 of 9)	267493	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_8680	chr1	182307300	182307430	+	8.10102	NA	Intergenic	Intergenic	-24169	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
19-PTNLD28-TUMOR_peak_24547	chr12	54616446	54616724	+	8.10102	NA	Intergenic	L2b|LINE|L2	8675	NR_039851	100616400		NR_039851	miRBase:MI0017335	MIR3198-2	-	microRNA 3198-2	ncRNA
19-PTNLD28-TUMOR_peak_11306	chr1	241776027	241776165	+	8.10102	NA	intron (NM_014322, intron 1 of 3)	LTR26|LTR|ERV1	23136	NM_001821	1122	Hs.654545	NM_001821	HPRD:00341	CHML	REP2	choroideremia-like (Rab escort protein 2)	protein-coding
19-PTNLD28-TUMOR_peak_31175	chr14	72377094	72377258	+	8.10102	NA	Intergenic	MER34B|LTR|ERV1	-21641	NM_001204423	9628	Hs.509872	NM_004296	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
19-PTNLD28-TUMOR_peak_53849	chr2	86116243	86116333	+	8.10061	NA	promoter-TSS (NM_003896)	promoter-TSS (NM_003896)	-115	NR_110569	101928113	Hs.625888	NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_81585	chr5	112399716	112400109	+	8.10061	NA	intron (NM_002387, intron 11 of 16)	intron (NM_002387, intron 11 of 16)	87505	NM_001242377	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_79531	chr5	36877224	36877641	+	8.10061	NA	promoter-TSS (NR_046262)	promoter-TSS (NR_046262)	571	NM_133433	25836	Hs.481927	NM_015384	HPRD:10560	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	Nipped-B homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_47199	chr19	10397552	10397661	+	8.10034	NA	promoter-TSS (NM_022377)	promoter-TSS (NM_022377)	-37	NM_001544	3386	Hs.706750	NM_001544	HPRD:00198	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
19-PTNLD28-TUMOR_peak_35707	chr16	1249128	1249379	+	8.09970	NA	intron (NM_001005407, intron 6 of 33)	CpG	26001	NM_012467	25823	Hs.592076	NM_012467	HPRD:07160	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_77745	chr4	155903650	155903854	+	8.09970	NA	Intergenic	Intergenic	201095	NM_001277173	166863	Hs.133095	NM_144979	HPRD:14517	RBM46	CT68	RNA binding motif protein 46	protein-coding
19-PTNLD28-TUMOR_peak_102306	chr9	16368044	16368139	+	8.09970	NA	Intergenic	Intergenic	-91780	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_44803	chr18	19770600	19770846	+	8.09970	NA	intron (NM_005257, intron 6 of 6)	intron (NM_005257, intron 6 of 6)	21325	NM_005257	2627	Hs.514746	NM_005257	HPRD:09043	GATA6	-	GATA binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_50557	chr19	58682345	58682509	+	8.09970	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-11929	NM_016324	10782	Hs.83761	NM_016324	HPRD:05682	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
19-PTNLD28-TUMOR_peak_16394	chr10	135143328	135143479	+	8.09970	NA	intron (NM_015722, intron 1 of 5)	CpG	7072	NM_015722	50632	Hs.148680	NM_015722	HPRD:06871	CALY	DRD1IP|NSG3	calcyon neuron-specific vesicular protein	protein-coding
19-PTNLD28-TUMOR_peak_44860	chr18	20419496	20419652	+	8.09970	NA	Intergenic	Intergenic	-52774	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_5335	chr1	109440878	109440975	+	8.09970	NA	intron (NM_013296, intron 5 of 14)	intron (NM_013296, intron 5 of 14)	21323	NM_013296	29899	Hs.584901	NM_013296	HPRD:06609	GPSM2	CMCS|DFNB82|LGN|PINS	G-protein signaling modulator 2	protein-coding
19-PTNLD28-TUMOR_peak_99259	chr8	76319265	76319527	+	8.09970	NA	Intergenic	Intergenic	-82420	NR_103849	101805492	Hs.571424	NR_103848		CASC9	LINC00981	cancer susceptibility candidate 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_53471	chr2	73200873	73200963	+	8.09970	NA	intron (NM_144579, intron 10 of 13)	intron (NM_144579, intron 10 of 13)	56314	NM_004097	2016	Hs.516090	NM_004097	HPRD:08963	EMX1	-	empty spiracles homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_20518	chr11	89469822	89470240	+	8.09970	NA	Intergenic	Intergenic	26564	NM_001146162	390231	Hs.723112	NM_001146162	ENSG00000214414	TRIM77	TRIM77P	tripartite motif containing 77	protein-coding
19-PTNLD28-TUMOR_peak_109532	chrX	133941546	133941781	+	8.09970	NA	exon (NM_001170783, exon 1 of 3)	exon (NM_001170783, exon 1 of 3)	440	NM_138819	159091	Hs.269127	NM_138819	HPRD:06615	FAM122C	-	family with sequence similarity 122C	protein-coding
19-PTNLD28-TUMOR_peak_36432	chr16	14623083	14623191	+	8.09970	NA	intron (NM_001134477, intron 21 of 23)	intron (NM_001134477, intron 21 of 23)	100991	NM_002582	5073	Hs.253197	NM_002582	HPRD:07250	PARN	DAN	poly(A)-specific ribonuclease	protein-coding
19-PTNLD28-TUMOR_peak_78019	chr4	170204008	170204178	+	8.09970	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-11844	NM_020870	57630	Hs.301804	NM_020870	HPRD:15335	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
19-PTNLD28-TUMOR_peak_84996	chr6	4638104	4638266	+	8.09970	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	27386	NR_122107	497048	Hs.591355	NM_001011540		KU-MEL-3	-	uncharacterized LOC497048	ncRNA
19-PTNLD28-TUMOR_peak_40284	chr17	15383532	15383808	+	8.09970	NA	intron (NR_037924, intron 4 of 5)	intron (NR_037924, intron 4 of 5)	-12745	NM_001204477	284040	Hs.164595	NM_173622	HPRD:08208	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_92271	chr7	44254075	44254181	+	8.09970	NA	TTS (NM_006555)	TTS (NM_006555)	13550	NM_006555	10652	Hs.520794	NM_006555	HPRD:16205	YKT6	-	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_50054	chr19	51661697	51661909	+	8.09970	NA	intron (NR_110732, intron 2 of 4)	intron (NR_110732, intron 2 of 4)	-8782	NR_047529	284367	Hs.132045	NR_002804	ENSG00000171101	SIGLEC17P	HSPC078|SIGLECP2|SIGLECP3	sialic acid binding Ig-like lectin 17, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_92323	chr7	44850805	44850900	+	8.09970	NA	Intergenic	L1MC4|LINE|L1	14617	NM_001300981	5478	Hs.356331	NM_021130	HPRD:00457	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A (cyclophilin A)	protein-coding
19-PTNLD28-TUMOR_peak_39867	chr17	5000884	5001048	+	8.09970	NA	Intergenic	CpG	19212	NM_153018	124961	Hs.48832	NM_153018	HPRD:08705	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_50750	chr2	691841	692045	+	8.09495	NA	Intergenic	Intergenic	-14504	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_46872	chr19	5894213	5894639	+	8.08625	NA	TTS (NM_175614)	TTS (NM_175614)	9598	NM_175614	126328	Hs.406062	NM_175614	HPRD:14818	NDUFA11	B14.7|CI-B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa	protein-coding
19-PTNLD28-TUMOR_peak_39000	chr16	81867401	81867640	+	8.08625	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	54657	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_13840	chr10	63663088	63663399	+	8.08625	NA	intron (NM_032199, intron 2 of 9)	CpG	2230	NM_032199	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_2095	chr1	32420410	32420545	+	8.08625	NA	Intergenic	Intergenic	-16489	NM_080391	8073	Hs.470477	NM_003479	HPRD:03348	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
19-PTNLD28-TUMOR_peak_32015	chr14	100149199	100149297	+	8.08625	NA	Intergenic	Intergenic	-1507	NM_006668	10858	Hs.25121	NM_006668	HPRD:04970	CYP46A1	CP46|CYP46	cytochrome P450, family 46, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_75441	chr4	57774730	57775003	+	8.08625	NA	promoter-TSS (NM_001193508)	promoter-TSS (NM_001193508)	-213	NM_001193508	5978	Hs.307836	NM_005612	HPRD:08990	REST	NRSF|XBR	RE1-silencing transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_875	chr1	12996256	12996392	+	8.08625	NA	Intergenic	Intergenic	6029	NM_001010890	343070	Hs.631873	NM_001010890	HPRD:18596	PRAMEF9	-	PRAME family member 9	protein-coding
19-PTNLD28-TUMOR_peak_2765	chr1	41134688	41134780	+	8.08625	NA	Intergenic	Intergenic	-3410	NM_014747	9783	Hs.654808	NM_014747	HPRD:17976	RIMS3	NIM3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
19-PTNLD28-TUMOR_peak_97161	chr8	11325098	11325322	+	8.08535	NA	promoter-TSS (NM_053279)	promoter-TSS (NM_053279)	-934	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_44750	chr18	15000119	15000647	+	8.08535	NA	Intergenic	CpG	-29916	NR_110783	101927642	Hs.711242	NR_110783		LINC01444	-	long intergenic non-protein coding RNA 1444	ncRNA
19-PTNLD28-TUMOR_peak_45363	chr18	39891463	39891655	+	8.08535	NA	intron (NR_046457, intron 4 of 6)	intron (NR_046457, intron 4 of 6)	124926	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_53936	chr2	87602034	87602181	+	8.08389	NA	Intergenic	Intergenic	-152867	NR_024204	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
19-PTNLD28-TUMOR_peak_106241	chr9	130889795	130890175	+	8.08376	NA	promoter-TSS (NR_024425)	promoter-TSS (NR_024425)	482	NM_001256335	80142	Hs.495219	NM_025072	HPRD:07458	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_49553	chr19	47535588	47535688	+	8.08376	NA	intron (NM_002517, intron 3 of 10)	intron (NM_002517, intron 3 of 10)	11495	NM_002517	4861	Hs.79564	NM_002517	HPRD:09136	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_110094	chrY	1886010	1886226	+	8.08376	NA	Intergenic	Intergenic	202092	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_107358	chrX	1936010	1936226	+	8.08376	NA	Intergenic	Intergenic	202092	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_86589	chr6	31172640	31172758	+	8.08290	NA	TTS (NR_026791).3	TTS (NR_026791).3	7162	NR_026791	253018	Hs.659818	NR_026791	HPRD:13637	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20620	chr11	93970961	93971572	+	8.08096	NA	Intergenic	L1PA2|LINE|L1	-67537	NM_001199206	390243	Hs.553758	NM_001080486	ENSG00000183560	FOLR4	Folbp3|JUNO	folate receptor 4, delta (putative)	protein-coding
19-PTNLD28-TUMOR_peak_105034	chr9	103790793	103791354	+	8.08096	NA	promoter-TSS (NM_207299)	promoter-TSS (NM_207299)	42	NM_207299	54886	Hs.382683	NM_017753	HPRD:17906	LPPR1	PRG-3	lipid phosphate phosphatase-related protein type 1	protein-coding
19-PTNLD28-TUMOR_peak_22308	chr11	134201507	134201616	+	8.08096	NA	promoter-TSS (NM_138342)	promoter-TSS (NM_138342)	-207	NM_138342	89944	Hs.436178	NM_138342	HPRD:14265	GLB1L2	MST114|MSTP114	galactosidase, beta 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_100974	chr8	131423518	131424090	+	8.08096	NA	intron (NM_018482, intron 1 of 29)	LTR16C|LTR|ERVL	32102	NM_001247996	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_91020	chr7	4650568	4650724	+	8.08096	NA	Intergenic	Zaphod2|DNA|hAT-Tip100	-71284	NM_001037165	221937	Hs.487393	NM_001037165	HPRD:18750	FOXK1	FOXK1L	forkhead box K1	protein-coding
19-PTNLD28-TUMOR_peak_61672	chr20	47998511	47998660	+	8.08096	NA	intron (NM_004975, intron 1 of 1)	intron (NM_004975, intron 1 of 1)	100596	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	potassium voltage-gated channel, Shab-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_40432	chr17	17826222	17826401	+	8.08096	NA	intron (NM_001033551, intron 1 of 13)	intron (NM_001033551, intron 1 of 13)	49473	NM_001082968	146691	Hs.462379	NM_144678	HPRD:18213	TOM1L2	-	target of myb1-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_32581	chr15	23443140	23443293	+	8.07922	NA	intron (NR_033350, intron 12 of 17)	intron (NR_033350, intron 12 of 17)	8146	NR_033350	390535	Hs.454647	NM_001012423	HPRD:17381	GOLGA8EP	GOLGA8E	golgin A8 family, member E, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29593	chr14	24777441	24777538	+	8.07922	NA	3' UTR (NM_174913, exon 10 of 10)	3' UTR (NM_174913, exon 10 of 10)	-1868	NM_001164692	56413	Hs.642693	NM_019839	HPRD:16153	LTB4R2	BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9	leukotriene B4 receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_93371	chr7	74646611	74646709	+	8.07922	NA	intron (NR_002206, intron 1 of 23).2	MLT1L|LTR|ERVL-MaLR	6799	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7349	chr1	156674849	156674976	+	8.07897	NA	intron (NM_001199723, intron 2 of 4)	CpG	547	NM_001878	1382	Hs.405662	NM_001878	HPRD:08353	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_71374	chr3	141596116	141596330	+	8.07897	NA	intron (NM_001679, intron 1 of 6)	CpG	753	NM_001679	483	Hs.477789	NM_001679	HPRD:03521	ATP1B3	ATPB-3|CD298	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_49162	chr19	41857240	41857440	+	8.07702	NA	intron (NM_000660, intron 1 of 6)	CpG	2498	NM_000660	7040	Hs.645227	NM_000660		TGFB1	CED|DPD1|LAP|TGFB|TGFbeta	transforming growth factor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_13488	chr10	49207899	49208004	+	8.07702	NA	promoter-TSS (NM_001137549).3	promoter-TSS (NM_001137549).3	-126	NM_001137549	100133093	Hs.723078	NM_001137549	ENSG00000197910	FAM25G	FAM25A|FAM25B|FAM25C|bA301J7.4	family with sequence similarity 25, member G	protein-coding
19-PTNLD28-TUMOR_peak_78429	chr4	187647126	187647221	+	8.07423	NA	Intergenic	CpG-20331	-2186	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_40689	chr17	22251278	22251393	+	8.07222	NA	Intergenic	ALR/Alpha|Satellite|centr	228898	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_22579	chr12	4029454	4029595	+	8.07084	NA	Intergenic	Intergenic	-46910	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_10401	chr1	224832385	224832475	+	8.07084	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	28251	NM_152495	149111	Hs.731723	NM_152495	HPRD:08799	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
19-PTNLD28-TUMOR_peak_30747	chr14	64685665	64685795	+	8.07084	NA	intron (NM_182914, intron 109 of 115)	intron (NM_182914, intron 109 of 115)	3058	NM_182910	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_32698	chr15	27939971	27940067	+	8.07084	NA	Intergenic	LTR10D|LTR|ERV1	404439	NM_001300984	4948	Hs.654411	NM_000275	HPRD:01945	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
19-PTNLD28-TUMOR_peak_52529	chr2	45943184	45943298	+	8.07084	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	64198	NM_005400	5581	Hs.580351	NM_005400	HPRD:01500	PRKCE	PKCE|nPKC-epsilon	protein kinase C, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_21543	chr11	118901107	118901240	+	8.07084	NA	promoter-TSS (NM_001164280)	promoter-TSS (NM_001164280)	443	NM_001164278	2542	Hs.719203	NM_001467	HPRD:04052	SLC37A4	G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|TRG-19|TRG19	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_58344	chr2	218156098	218156247	+	8.07084	NA	intron (NR_026597, intron 12 of 12)	intron (NR_026597, intron 12 of 12)	-431390	NM_003284	7141	Hs.3017	NM_003284	HPRD:01830	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
19-PTNLD28-TUMOR_peak_92865	chr7	64587863	64588036	+	8.07084	NA	Intergenic	Intergenic	89217	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_43541	chr17	74295297	74295565	+	8.07084	NA	intron (NM_032134, intron 3 of 18)	intron (NM_032134, intron 3 of 18)	8330	NM_032134	84074	Hs.252739	NM_032134	HPRD:10891	QRICH2	-	glutamine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_46432	chr18	77685287	77685426	+	8.07084	NA	intron (NM_001146345, intron 3 of 4)	intron (NM_001146345, intron 3 of 4)	26297	NM_025078	80148	Hs.288284	NM_025078	HPRD:11454	PQLC1	-	PQ loop repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38823	chr16	77589896	77590028	+	8.07084	NA	Intergenic	Intergenic	-120951	NM_199355	170692	Hs.188746	NM_139054	HPRD:06333	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif, 18	protein-coding
19-PTNLD28-TUMOR_peak_84478	chr5	179098659	179098908	+	8.07084	NA	Intergenic	L2a|LINE|L2	9192	NM_001164444	646019	Hs.535767	NM_001164444	ENSG00000204659	CBY3	-	chibby homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_312	chr1	4142539	4142718	+	8.07084	NA	Intergenic	Intergenic	141956	NR_040065	728716	Hs.668359	NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
19-PTNLD28-TUMOR_peak_86604	chr6	31367705	31367894	+	8.07009	NA	5' UTR (NM_001289154, exon 1 of 6).3	5' UTR (NM_001289154, exon 1 of 6).3	238	NM_001289153	100507436	Hs.130838	NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
19-PTNLD28-TUMOR_peak_43352	chr17	72873490	72873615	+	8.06422	NA	3' UTR (NM_178128, exon 6 of 6)	3' UTR (NM_178128, exon 6 of 6)	-4396	NR_047576	2232	Hs.69745	NM_004110	HPRD:00060	FDXR	ADXR	ferredoxin reductase	protein-coding
19-PTNLD28-TUMOR_peak_64712	chr22	24236921	24237361	+	8.06373	NA	non-coding (NR_038911, exon 3 of 3)	non-coding (NR_038911, exon 3 of 3)	576	NM_002415	4282	Hs.407995	NM_002415		MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding
19-PTNLD28-TUMOR_peak_5980	chr1	120258286	120258470	+	8.06373	NA	intron (NM_006623, intron 1 of 11)	intron (NM_006623, intron 1 of 11)	3959	NM_006623	26227	Hs.487296	NM_006623	HPRD:06047	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_6263	chr1	145130814	145130969	+	8.06373	NA	intron (NM_001277444, intron 20 of 24)	intron (NM_001277444, intron 20 of 24)	34484	NM_004892	9554	Hs.632438	NM_004892		SEC22B	ERS-24|SEC22L1	SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_107614	chrX	14048486	14048592	+	8.06052	NA	promoter-TSS (NM_001042480)	promoter-TSS (NM_001042480)	-504	NM_001042480	54960	Hs.592237	NM_017856	HPRD:06533	GEMIN8	FAM51A1	gem (nuclear organelle) associated protein 8	protein-coding
19-PTNLD28-TUMOR_peak_64150	chr22	16192286	16192454	+	8.05940	NA	intron (NR_122113, intron 1 of 7)	AluSx|SINE|Alu	639	NR_122113	503637	Hs.744284	NR_122113		DUXAP8	-	double homeobox A pseudogene 8	pseudo
19-PTNLD28-TUMOR_peak_16043	chr10	124058422	124058531	+	8.05899	NA	intron (NM_144587, intron 8 of 15)	intron (NM_144587, intron 8 of 15)	27655	NM_144587	118663	Hs.422466	NM_144587	HPRD:12594	BTBD16	C10orf87	BTB (POZ) domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_10700	chr1	229211016	229211214	+	8.05899	NA	Intergenic	L3b|LINE|CR1	-195694	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_70807	chr3	130586271	130586366	+	8.05899	NA	intron (NM_001199182, intron 1 of 26)	SVA_D|Other|Other	16949	NM_001199180	27032	Hs.584884	NM_014382	HPRD:05089	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase, Ca++ transporting, type 2C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_102192	chr9	13037982	13038158	+	8.05899	NA	Intergenic	L1PA2|LINE|L1	-223682	NR_125775	101929467	Hs.586443	NR_125775		LURAP1L-AS1	-	LURAP1L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69000	chr3	72135691	72135816	+	8.05899	NA	intron (NR_104116, intron 2 of 6)	intron (NR_104116, intron 2 of 6)	13853	NR_104116	285286	Hs.559386	NR_104116		LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
19-PTNLD28-TUMOR_peak_60551	chr20	31773401	31773564	+	8.05899	NA	Intergenic	SVA_D|Other|Other	-7929	NR_026760	317716	Hs.434194	NM_173859	HPRD:06359	BPIFA4P	BASE	BPI fold containing family A, member 4, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74900	chr4	31463137	31463412	+	8.05899	NA	Intergenic	LTR8|LTR|ERV1	741237	NM_032457	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_30558	chr14	59104699	59105150	+	8.05899	NA	promoter-TSS (NR_046095)	promoter-TSS (NR_046095)	167	NM_016651	51339	Hs.48950	NM_016651	HPRD:09709	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding
19-PTNLD28-TUMOR_peak_96889	chr8	2199976	2200262	+	8.05899	NA	Intergenic	Intergenic	175450	NR_106983	102465695		NR_106983		MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
19-PTNLD28-TUMOR_peak_8263	chr1	173376005	173376230	+	8.05899	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	70177	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_18616	chr11	56951434	56951595	+	8.05899	NA	intron (NM_001005210, intron 1 of 1)	intron (NM_001005210, intron 1 of 1)	2293	NM_001005210	219527	Hs.199853	NM_001005210	HPRD:16990	LRRC55	-	leucine rich repeat containing 55	protein-coding
19-PTNLD28-TUMOR_peak_24840	chr12	58870792	58870890	+	8.05899	NA	Intergenic	L1PA3|LINE|L1	304657	NR_120452	101927653	Hs.130744	NR_120452		LOC101927653	-	uncharacterized LOC101927653	ncRNA
19-PTNLD28-TUMOR_peak_51409	chr2	19740960	19741179	+	8.05824	NA	Intergenic	Intergenic	-182697	NM_145260	130497	Hs.123933	NM_145260	HPRD:16401	OSR1	ODD	odd-skipped related transciption factor 1	protein-coding
19-PTNLD28-TUMOR_peak_86997	chr6	35285703	35285852	+	8.05824	NA	intron (NM_022047, intron 6 of 10)	intron (NM_022047, intron 6 of 10)	20182	NM_022047	50619	Hs.15476	NM_022047	HPRD:10869	DEF6	IBP|SLAT|SWAP70L	differentially expressed in FDCP 6 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_51737	chr2	27531013	27531129	+	8.05824	NA	promoter-TSS (NM_003353)	promoter-TSS (NM_003353)	59	NM_003353	7349	Hs.534363	NM_003353		UCN	UI|UROC	urocortin	protein-coding
19-PTNLD28-TUMOR_peak_32136	chr14	102785949	102786042	+	8.05778	NA	promoter-TSS (NM_018335)	promoter-TSS (NM_018335)	-93	NM_018335	55778	Hs.743359	NM_018335	HPRD:18532	ZNF839	C14orf131	zinc finger protein 839	protein-coding
19-PTNLD28-TUMOR_peak_94530	chr7	102191429	102191564	+	8.05777	NA	promoter-TSS (NM_001166339)	promoter-TSS (NM_001166339)	-183	NM_001031618	441273	Hs.656428	NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
19-PTNLD28-TUMOR_peak_101656	chr8	144798504	144798607	+	8.05725	NA	promoter-TSS (NM_139021)	promoter-TSS (NM_139021)	48	NM_139021	225689	Hs.493169	NM_139021	HPRD:16867	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
19-PTNLD28-TUMOR_peak_64810	chr22	25377767	25377945	+	8.05670	NA	Intergenic	AluJb|SINE|Alu	-42542	NM_001001663	255349	Hs.329040	NM_001001663	HPRD:17327	TMEM211	bA9F11.1	transmembrane protein 211	protein-coding
19-PTNLD28-TUMOR_peak_7026	chr1	153924435	153924598	+	8.05670	NA	exon (NM_181715, exon 10 of 14)	exon (NM_181715, exon 10 of 14)	-5362	NM_014856	9909	Hs.744878	NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN/MADD domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_88844	chr6	97372045	97372296	+	8.05670	NA	promoter-TSS (NM_001286250)	promoter-TSS (NM_001286250)	-326	NM_001286252	114792	Hs.45056	NM_052904	HPRD:13898	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch-like family member 32	protein-coding
19-PTNLD28-TUMOR_peak_39832	chr17	4736461	4736696	+	8.05670	NA	promoter-TSS (NM_153827)	promoter-TSS (NM_153827)	-57	NM_170663	50488	Hs.443417	NM_015716	HPRD:11366	MINK1	B55|MAP4K6|MINK|YSK2|ZC3|hMINK|hMINKbeta	misshapen-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_47460	chr19	12943343	12943667	+	8.05670	NA	intron (NM_031429, intron 2 of 6)	CpG	1885	NM_001270442	83546	Hs.21162	NM_031429	HPRD:18007	RTBDN	-	retbindin	protein-coding
19-PTNLD28-TUMOR_peak_96098	chr7	143992596	143992801	+	8.05658	NA	Intergenic	Intergenic	-3768	NR_002158	401428	Hs.490448	NR_002158	ENSG00000170356	OR2A20P	OR2A20	olfactory receptor, family 2, subfamily A, member 20 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_42112	chr17	47337526	47337659	+	8.05216	NA	Intergenic	Intergenic	11987	NR_034161	124871	Hs.446890	NM_001007529	HPRD:16950	FLJ40194	-	uncharacterized FLJ40194	ncRNA
19-PTNLD28-TUMOR_peak_194	chr1	1976394	1976498	+	8.05216	NA	Intergenic	CpG	-5463	NM_002744	5590	Hs.496255	NM_002744	HPRD:01504	PRKCZ	PKC-ZETA|PKC2	protein kinase C, zeta	protein-coding
19-PTNLD28-TUMOR_peak_3869	chr1	59964524	59964622	+	8.05216	NA	intron (NM_001113411, intron 6 of 16)	intron (NM_001113411, intron 6 of 16)	-16728	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_84563	chr5	180229753	180229887	+	8.05216	NA	5' UTR (NM_002406, exon 1 of 2)	5' UTR (NM_002406, exon 1 of 2)	228	NM_002406	4245	Hs.519818	NM_002406	HPRD:01189	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_95349	chr7	130904317	130904534	+	8.05128	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	108113	NR_125364	100506881	Hs.660830	NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_27157	chr12	129267639	129267797	+	8.05128	NA	Intergenic	Intergenic	40823	NM_145648	121260	Hs.507260	NM_145648	ENSG00000139370	SLC15A4	PHT1|PTR4	solute carrier family 15 (oligopeptide transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_49489	chr19	46898795	46899004	+	8.05128	NA	Intergenic	AluSx3|SINE|Alu	18020	NM_032040	83987	Hs.97876	NM_032040	HPRD:13009	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_15999	chr10	123220396	123220570	+	8.05128	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	132998	NM_001144913	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_108771	chrX	74144688	74145234	+	8.05128	NA	5' UTR (NM_001008537, exon 1 of 4)	5' UTR (NM_001008537, exon 1 of 4)	326	NM_001008537	340533	Hs.124128	NM_001008537	HPRD:15957	KIAA2022	MRX98|XPN	KIAA2022	protein-coding
19-PTNLD28-TUMOR_peak_17132	chr11	11049749	11049870	+	8.05128	NA	Intergenic	Intergenic	170045	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90970	chr7	3127022	3127168	+	8.05128	NA	Intergenic	Intergenic	-43516	NM_032415	84433	Hs.648101	NM_032415	HPRD:06234	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_12394	chr10	23603935	23604029	+	8.05128	NA	Intergenic	Intergenic	29790	NM_153714	256815	Hs.522360	NM_153714	HPRD:12585	C10orf67	-	chromosome 10 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_39658	chr17	1914876	1914966	+	8.05128	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	13257	NM_178568	146760	Hs.22917	NM_178568	HPRD:11523	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_81921	chr5	125855091	125855198	+	8.05128	NA	Intergenic	AluSp|SINE|Alu	54357	NM_001146322	65983	Hs.363558	NM_023927	HPRD:11402	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_52236	chr2	38893158	38893265	+	8.05128	NA	5' UTR (NM_138801, exon 1 of 7)	5' UTR (NM_138801, exon 1 of 7)	159	NM_138801	130589	Hs.435012	NM_138801	HPRD:13559	GALM	GLAT|HEL-S-63p|IBD1	galactose mutarotase (aldose 1-epimerase)	protein-coding
19-PTNLD28-TUMOR_peak_79187	chr5	18471969	18472172	+	8.05128	NA	Intergenic	L1PA3|LINE|L1	-1084651	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_96645	chr7	155531466	155531653	+	8.05128	NA	intron (NM_053043, intron 11 of 17)	intron (NM_053043, intron 11 of 17)	73408	NM_000193	6469	Hs.164537	NM_000193		SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS	sonic hedgehog	protein-coding
19-PTNLD28-TUMOR_peak_39268	chr16	87447713	87447978	+	8.05128	NA	intron (NM_015144, intron 10 of 12)	CpG	22044	NM_022818	81631	Hs.356061	NM_022818	HPRD:14358	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule-associated protein 1 light chain 3 beta	protein-coding
19-PTNLD28-TUMOR_peak_40477	chr17	18601259	18601375	+	8.05128	NA	Intergenic	Intergenic	-15745	NM_001145045	729288	Hs.534279	NM_001145045	ENSG00000249459	ZNF286B	ZNF286C|ZNF286L|ZNF590	zinc finger protein 286B	protein-coding
19-PTNLD28-TUMOR_peak_85183	chr6	7698360	7698599	+	8.05128	NA	Intergenic	Intergenic	-28532	NM_001718	654	Hs.285671	NM_001718	HPRD:00211	BMP6	VGR|VGR1	bone morphogenetic protein 6	protein-coding
19-PTNLD28-TUMOR_peak_3188	chr1	46337992	46338108	+	8.05128	NA	intron (NM_015112, intron 3 of 28)	intron (NM_015112, intron 3 of 28)	68765	NM_015112	23139	Hs.319481	NM_015112	HPRD:11294	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_59226	chr2	241137893	241138142	+	8.05128	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-57944	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_19361	chr11	65880733	65880864	+	8.05128	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	42974	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102295	chr9	16252739	16252864	+	8.05128	NA	intron (NR_073471, intron 1 of 3)	intron (NR_073471, intron 1 of 3)	304	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_94463	chr7	101448446	101448538	+	8.05128	NA	Intergenic	Intergenic	-10692	NM_001913	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_1763	chr1	27684134	27684264	+	8.05128	NA	intron (NM_001297609, intron 21 of 27)	intron (NM_001297609, intron 21 of 27)	9158	NM_004672	9064	Hs.194694	NM_004672	HPRD:05126	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_18331	chr11	45523832	45524049	+	8.05128	NA	Intergenic	MIR|SINE|MIR	130992	NR_122071	399886	Hs.559970	NR_122071	HPRD:13453	LOC399886	-	uncharacterized LOC399886	ncRNA
19-PTNLD28-TUMOR_peak_96702	chr7	157043450	157043551	+	8.05128	NA	intron (NM_014671, intron 19 of 22)	intron (NM_014671, intron 19 of 22)	-86210	NM_005494	10049	Hs.490745	NM_005494	HPRD:07107	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ (Hsp40) homolog, subfamily B, member 6	protein-coding
19-PTNLD28-TUMOR_peak_95422	chr7	132033948	132034112	+	8.05128	NA	intron (NM_020911, intron 3 of 31)	AmnSINE1|SINE|Deu	227293	NM_020911	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_65563	chr22	39631414	39631679	+	8.05128	NA	intron (NM_002608, intron 2 of 6)	intron (NM_002608, intron 2 of 6)	5368	NM_033016	5155	Hs.1976	NM_002608	HPRD:01815	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_61679	chr20	48077463	48077706	+	8.05128	NA	intron (NM_004975, intron 1 of 1)	intron (NM_004975, intron 1 of 1)	21597	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	potassium voltage-gated channel, Shab-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_41644	chr17	41677247	41677416	+	8.05128	NA	Intergenic	AluSx1|SINE|Alu	-53531	NM_001079675	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_86122	chr6	26269259	26269472	+	8.05012	NA	Intergenic	LTR8|LTR|ERV1	2247	NM_003534	8355	Hs.247813	NM_003534	HPRD:11909	HIST1H3G	H3/h|H3FH	histone cluster 1, H3g	protein-coding
19-PTNLD28-TUMOR_peak_91107	chr7	5635833	5635943	+	8.05012	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	3452	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82071	chr5	131439438	131439564	+	8.04829	NA	Intergenic	Intergenic	30016	NM_000758	1437	Hs.1349	NM_000758	HPRD:00734	CSF2	GMCSF	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_17004	chr11	8891990	8892600	+	8.04829	NA	intron (NM_005418, intron 2 of 22)	CpG	40203	NM_005418	6764	Hs.117715	NM_005418	HPRD:00780	ST5	DENND2B|HTS1|p126	suppression of tumorigenicity 5	protein-coding
19-PTNLD28-TUMOR_peak_16381	chr10	135071147	135071409	+	8.04829	NA	Intergenic	Intergenic	-9889	NR_108079	101927671	Hs.741766	NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_94532	chr7	102212351	102212614	+	8.04587	NA	intron (NM_001097615, intron 1 of 8)	MIR|SINE|MIR	586	NM_001097615	548644	Hs.610255	NM_001015884	HPRD:18684	POLR2J3	POLR2J2|RPB11b1|RPB11b2	polymerase (RNA) II (DNA directed) polypeptide J3	protein-coding
19-PTNLD28-TUMOR_peak_38293	chr16	67189319	67189468	+	8.04409	NA	exon (NM_003789, exon 3 of 5)	exon (NM_003789, exon 3 of 5)	4419	NM_003789	8717	Hs.460996	NM_003789		TRADD	Hs.89862	TNFRSF1A-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_35895	chr16	3081772	3081884	+	8.04409	NA	promoter-TSS (NR_047572)	promoter-TSS (NR_047572)	-654	NR_047572	100128770	Hs.666223	NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
19-PTNLD28-TUMOR_peak_2845	chr1	41944725	41944847	+	8.04408	NA	3' UTR (NM_001956, exon 5 of 5)	3' UTR (NM_001956, exon 5 of 5)	5558	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_102905	chr9	35908291	35908580	+	8.03885	NA	Intergenic	Intergenic	-1045	NR_024283	158376	Hs.302677	NR_024283	ENSG00000235387	LINC00961	-	long intergenic non-protein coding RNA 961	ncRNA
19-PTNLD28-TUMOR_peak_22985	chr12	9600704	9601003	+	8.03854	NA	promoter-TSS (NR_033399)	promoter-TSS (NR_033399)	-85	NR_033399	440081	Hs.447869	NM_004400	ENSG00000214826	DDX12P	CHLR2|DDX12	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58478	chr2	220118624	220118717	+	8.03854	NA	promoter-TSS (NM_006000)	promoter-TSS (NM_006000)	-2	NM_006000	7277	Hs.75318	NM_006000	HPRD:01851	TUBA4A	H2-ALPHA|TUBA1	tubulin, alpha 4a	protein-coding
19-PTNLD28-TUMOR_peak_45047	chr18	25757176	25757396	+	8.03788	NA	5' UTR (NM_001792, exon 1 of 16)	5' UTR (NM_001792, exon 1 of 16)	159	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_5910	chr1	118471556	118471751	+	8.03652	NA	promoter-TSS (NM_006784)	promoter-TSS (NM_006784)	649	NM_017686	54834	Hs.310809	NM_017686	HPRD:06576	GDAP2	MACROD3	ganglioside induced differentiation associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_15314	chr10	103881181	103881316	+	8.03652	NA	Intergenic	Intergenic	-1038	NM_001113407	8861	Hs.454418	NM_003893	HPRD:09144	LDB1	CLIM2|NLI	LIM domain binding 1	protein-coding
19-PTNLD28-TUMOR_peak_51040	chr2	10182921	10183088	+	8.03652	NA	promoter-TSS (NM_003597)	promoter-TSS (NM_003597)	-678	NM_003597	8462	Hs.12229	NM_003597	HPRD:04488	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel-like factor 11	protein-coding
19-PTNLD28-TUMOR_peak_36549	chr16	16384317	16384456	+	8.03413	NA	intron (NM_001004067, intron 29 of 30)	intron (NM_001004067, intron 29 of 30)	-9630	NR_036145	100423006		NR_036145	miRBase:MI0014221	MIR3179-3	-	microRNA 3179-3	ncRNA
19-PTNLD28-TUMOR_peak_51768	chr2	27886291	27886487	+	8.03413	NA	promoter-TSS (NM_018158)	promoter-TSS (NM_018158)	51	NM_018158	22950	Hs.306000	NM_018158	HPRD:04038	SLC4A1AP	-	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_94436	chr7	101171172	101171755	+	8.03413	NA	intron (NM_133457, intron 3 of 12)	intron (NM_133457, intron 3 of 12)	40823	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_61565	chr20	46618732	46619015	+	8.03413	NA	promoter-TSS (NR_110027)	promoter-TSS (NR_110027)	-12	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
19-PTNLD28-TUMOR_peak_71416	chr3	142682427	142682654	+	8.03413	NA	promoter-TSS (NM_198504)	promoter-TSS (NM_198504)	-360	NR_125393	101927832	Hs.710007	NR_125393		PAQR9-AS1	-	PAQR9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83977	chr5	172084731	172084836	+	8.03413	NA	intron (NM_001142651, intron 1 of 4)	LTR13A|LTR|ERVK	16507	NM_001142651	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
19-PTNLD28-TUMOR_peak_8320	chr1	175119868	175119991	+	8.03413	NA	Intergenic	Intergenic	42020	NM_001162895	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_80717	chr5	73949942	73950064	+	8.03413	NA	intron (NM_001292004, intron 1 of 13)	intron (NM_001292004, intron 1 of 13)	-12754	NM_003633	8507	Hs.104925	NM_003633	HPRD:05529	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1 (with BTB domain)	protein-coding
19-PTNLD28-TUMOR_peak_5385	chr1	110021523	110021714	+	8.03413	NA	intron (NM_001040709, intron 5 of 5)	intron (NM_001040709, intron 5 of 5)	-4943	NM_153340	127002	Hs.118248	NM_153340	HPRD:12506	ATXN7L2	-	ataxin 7-like 2	protein-coding
19-PTNLD28-TUMOR_peak_58791	chr2	231729396	231729740	+	8.03413	NA	promoter-TSS (NM_001012516)	promoter-TSS (NM_001012516)	-42	NM_001012514	81618	Hs.111577	NM_030926	HPRD:17167	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
19-PTNLD28-TUMOR_peak_57477	chr2	191625948	191626134	+	8.03413	NA	Intergenic	LTR12C|LTR|ERV1	112193	NM_005966	4664	Hs.107474	NM_005966	HPRD:02881	NAB1	-	NGFI-A binding protein 1 (EGR1 binding protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_104463	chr9	92046062	92046162	+	8.03413	NA	intron (NM_006378, intron 2 of 17)	intron (NM_006378, intron 2 of 17)	48499	NM_006378	10507	Hs.494406	NM_006378	HPRD:03520	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding
19-PTNLD28-TUMOR_peak_84517	chr5	179554068	179554247	+	8.03413	NA	intron (NM_175062, intron 6 of 13)	CpG	-55039	NM_018434	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_14104	chr10	71987793	71987906	+	8.03413	NA	intron (NM_021129, intron 2 of 10)	intron (NM_021129, intron 2 of 10)	5341	NM_021129	5464	Hs.437403	NM_021129	HPRD:01527	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
19-PTNLD28-TUMOR_peak_57193	chr2	178557386	178557482	+	8.03413	NA	intron (NM_001077197, intron 16 of 20)	intron (NM_001077197, intron 16 of 20)	-73740	NM_152275	92104	Hs.128384	NM_152275		TTC30A	-	tetratricopeptide repeat domain 30A	protein-coding
19-PTNLD28-TUMOR_peak_85608	chr6	15727355	15727527	+	8.03413	NA	Intergenic	SVA_D|Other|Other	-64152	NM_001271669	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41417	chr17	39093330	39093470	+	8.03413	NA	5' UTR (NM_001282433, exon 1 of 8)	5' UTR (NM_001282433, exon 1 of 8)	495	NM_001282433	25984	Hs.9029	NM_015515	HPRD:05863	KRT23	CK23|HAIK1|K23	keratin 23 (histone deacetylase inducible)	protein-coding
19-PTNLD28-TUMOR_peak_45198	chr18	32956886	32957119	+	8.03141	NA	intron (NM_145756, intron 1 of 4)	CpG	299	NM_145756	252884	Hs.351005	NM_145756	HPRD:18334	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
19-PTNLD28-TUMOR_peak_24099	chr12	49393605	49393742	+	8.02743	NA	promoter-TSS (NM_015086)	promoter-TSS (NM_015086)	-585	NM_015086	23109	Hs.591044	NM_015086	HPRD:10294	DDN	-	dendrin	protein-coding
19-PTNLD28-TUMOR_peak_16116	chr10	126106838	126107219	+	8.02718	NA	intron (NM_000274, intron 1 of 9)	CpG	517	NM_000274	4942	Hs.523332	NM_000274	HPRD:02021	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_57700	chr2	200320464	200320676	+	8.02718	NA	intron (NM_015265, intron 3 of 11)	CpG	2249	NM_001172509	23314	Hs.516617	NM_015265	HPRD:12178	SATB2	GLSS	SATB homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_28210	chr13	49550855	49550995	+	8.02718	NA	non-coding (NR_103528, exon 1 of 26)	non-coding (NR_103528, exon 1 of 26)	180	NR_103528	22862	Hs.508010	NM_014923	HPRD:13548	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_7200	chr1	155278987	155279138	+	8.02656	NA	intron (NM_001135821, intron 1 of 10)	intron (NM_001135821, intron 1 of 10)	357	NM_001135821	2224	Hs.335918	NM_002004	HPRD:00606	FDPS	FPPS|FPS	farnesyl diphosphate synthase	protein-coding
19-PTNLD28-TUMOR_peak_101835	chr8	146255798	146255905	+	8.02656	NA	Intergenic	HERVK14C-int|LTR|ERVK	-21973	NM_023080	65265	Hs.169615	NM_023080	HPRD:07951	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_24438	chr12	53440464	53440914	+	8.02656	NA	promoter-TSS (NM_198316)	promoter-TSS (NM_198316)	-121	NM_198316	23371	Hs.6147	NM_015319	HPRD:16256	TENC1	C1-TEN|C1TEN|TNS2	tensin like C1 domain containing phosphatase (tensin 2)	protein-coding
19-PTNLD28-TUMOR_peak_62486	chr20	60936547	60936711	+	8.02426	NA	intron (NM_005560, intron 2 of 79)	intron (NM_005560, intron 2 of 79)	5739	NM_005560	3911	Hs.473256	NM_005560	HPRD:03020	LAMA5	-	laminin, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_55395	chr2	121541020	121541257	+	8.02414	NA	Intergenic	Intergenic	-13729	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_66899	chr3	15373520	15373788	+	8.02414	NA	intron (NM_001018009, intron 1 of 8)	CpG	482	NM_004844	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_5244	chr1	104283205	104283369	+	8.02414	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-8992	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_21765	chr11	122855048	122855432	+	8.01750	NA	Intergenic	CpG	-2861	NM_001098169	390259	Hs.449687	NM_001098169	ENSG00000188909	BSX	BSX1	brain-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_61213	chr20	42758692	42758910	+	8.01750	NA	intron (NM_020433, intron 2 of 5)	MIRb|SINE|MIR	57417	NM_175913	57158	Hs.441737	NM_020433	HPRD:12006	JPH2	CMH17|JP-2|JP2	junctophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_54637	chr2	105371869	105372111	+	8.01750	NA	intron (NR_038231, intron 1 of 3)	intron (NR_038231, intron 1 of 3)	2187	NR_038231	284998	Hs.410180	NR_038231	ENSG00000234177	LINC01114	PANCAT	long intergenic non-protein coding RNA 1114	ncRNA
19-PTNLD28-TUMOR_peak_34699	chr15	78509087	78509204	+	8.01750	NA	intron (NM_015162, intron 1 of 13)	intron (NM_015162, intron 1 of 13)	17904	NM_015162	23205	Hs.655760	NM_015162		ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
19-PTNLD28-TUMOR_peak_14776	chr10	89288429	89288542	+	8.01750	NA	intron (NM_001178118, intron 4 of 4)	L1PA5|LINE|L1	20895	NM_001178118	9562	Hs.121260	NM_004897	HPRD:05652	MINPP1	HIPER1|MINPP2|MIPP	multiple inositol-polyphosphate phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_53397	chr2	71260476	71260602	+	8.01750	NA	Intergenic	L1MB3|LINE|L1	9334	NR_002185	79315	Hs.327033	NR_002185	ENSG00000205847	OR7E91P	-	olfactory receptor, family 7, subfamily E, member 91 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_63480	chr21	39047648	39047739	+	8.01750	NA	intron (NM_002240, intron 3 of 3)	CpG	241048	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_4452	chr1	78298634	78298956	+	8.01750	NA	intron (NM_001270384, intron 7 of 15)	intron (NM_001270384, intron 7 of 15)	53486	NM_198549	374986	Hs.437755	NM_198549	HPRD:13415	FAM73A	-	family with sequence similarity 73, member A	protein-coding
19-PTNLD28-TUMOR_peak_45753	chr18	48246706	48246887	+	8.01750	NA	intron (NM_001292040, intron 3 of 3)	intron (NM_001292040, intron 3 of 3)	99638	NM_001127176	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_55695	chr2	131038073	131038161	+	8.01750	NA	Intergenic	Intergenic	61839	NM_032357	84317	Hs.104203	NM_032357	HPRD:14428	CCDC115	ccp1	coiled-coil domain containing 115	protein-coding
19-PTNLD28-TUMOR_peak_64756	chr22	24680810	24680908	+	8.01750	NA	intron (NR_103546, intron 2 of 19)	intron (NR_103546, intron 2 of 19)	14074	NM_015330	23384	Hs.474384	NM_015330	HPRD:11080	SPECC1L	CYTSA|OBLFC1	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding
19-PTNLD28-TUMOR_peak_70071	chr3	119921342	119921521	+	8.01750	NA	intron (NM_153002, intron 2 of 8)	AluJr|SINE|Alu	41711	NM_001168271	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_28786	chr13	99041735	99041866	+	8.01750	NA	intron (NM_005766, intron 9 of 26)	intron (NM_005766, intron 9 of 26)	132579	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_55358	chr2	121278851	121279021	+	8.01750	NA	Intergenic	Intergenic	-55011	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_41432	chr17	39572275	39572449	+	8.01750	NA	Intergenic	MIRb|SINE|MIR	8460	NM_003770	8688	Hs.673852	NM_003770	HPRD:05175	KRT37	HA7|K37|KRTHA7	keratin 37	protein-coding
19-PTNLD28-TUMOR_peak_36964	chr16	27248832	27249061	+	8.01750	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	-30580	NR_037184	400512	Hs.434412	NR_037184	ENSG00000245888	FLJ21408	-	uncharacterized LOC400512	ncRNA
19-PTNLD28-TUMOR_peak_42134	chr17	47563789	47563936	+	8.01750	NA	Intergenic	Intergenic	-8793	NM_002507	4804	Hs.415768	NM_002507	HPRD:01197	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_106275	chr9	131201044	131201304	+	8.01750	NA	Intergenic	Intergenic	-16260	NM_153436	4957	Hs.129055	NM_002540	HPRD:03601	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
19-PTNLD28-TUMOR_peak_8349	chr1	175523810	175524067	+	8.01750	NA	intron (NM_003285, intron 1 of 22)	intron (NM_003285, intron 1 of 22)	188814	NM_003285	7143	Hs.659864	NM_003285	HPRD:03589	TNR	TN-R	tenascin R	protein-coding
19-PTNLD28-TUMOR_peak_103232	chr9	42779647	42779785	+	8.01547	NA	intron (NR_121570, intron 3 of 4)	intron (NR_121570, intron 3 of 4)	8008	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_16383	chr10	135075009	135075121	+	8.01547	NA	TTS (NM_001164489)	TTS (NM_001164489)	-13676	NR_108079	101927671	Hs.741766	NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_86145	chr6	26388427	26388515	+	8.01547	NA	exon (NM_001197238, exon 4 of 8)	exon (NM_001197238, exon 4 of 8)	5032	NM_001197237	10385	Hs.373938	NM_006995	HPRD:12545	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin, subfamily 2, member A2	protein-coding
19-PTNLD28-TUMOR_peak_27290	chr12	133137513	133137738	+	8.01547	NA	intron (NM_001142641, intron 5 of 16)	intron (NM_001142641, intron 5 of 16)	-20958	NR_106821	102465975		NR_106821		MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
19-PTNLD28-TUMOR_peak_66030	chr22	47154868	47154987	+	8.01547	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3587	NM_001284303	25771	Hs.435044	NM_014346	HPRD:15474	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family, member 22A	protein-coding
19-PTNLD28-TUMOR_peak_6338	chr1	145714139	145714386	+	8.01547	NA	intron (NR_103845, intron 1 of 3)	MIRb|SINE|MIR	1377	NR_103845	11126	Hs.488237	NM_007053	HPRD:06833	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
19-PTNLD28-TUMOR_peak_49444	chr19	46303445	46303669	+	8.01547	NA	intron (NM_030785, intron 5 of 5)	intron (NM_030785, intron 5 of 5)	-7497	NM_004943	1762	Hs.515474	NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	dystrophia myotonica, WD repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_34766	chr15	80444615	80444789	+	8.01547	NA	promoter-TSS (NM_000137)	promoter-TSS (NM_000137)	-531	NM_000137	2184	Hs.73875	NM_000137	HPRD:02040	FAH	-	fumarylacetoacetate hydrolase (fumarylacetoacetase)	protein-coding
19-PTNLD28-TUMOR_peak_21163	chr11	112033620	112033766	+	8.01547	NA	intron (NM_001562, intron 1 of 5)	AluJb|SINE|Alu	1147	NM_001243211	3606	Hs.83077	NM_001562	HPRD:02976	IL18	IGIF|IL-18|IL-1g|IL1F4	interleukin 18	protein-coding
19-PTNLD28-TUMOR_peak_36139	chr16	8946518	8946787	+	8.01544	NA	TTS (NM_014316)	TTS (NM_014316)	9015	NM_001278262	23589	Hs.632184	NM_014316	HPRD:08515	CARHSP1	CRHSP-24|CSDC1	calcium regulated heat stable protein 1, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_97819	chr8	27190903	27191045	+	8.01544	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	7893	NM_173175	2185	Hs.491322	NM_004103	HPRD:03131	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_106828	chr9	140111214	140111489	+	8.01524	NA	3' UTR (NM_001144026, exon 14 of 14)	3' UTR (NM_001144026, exon 14 of 14)	4424	NM_031297	727800	Hs.512767	NM_031297	HPRD:13182	RNF208	-	ring finger protein 208	protein-coding
19-PTNLD28-TUMOR_peak_85143	chr6	7236145	7236269	+	8.00446	NA	intron (NM_001003698, intron 10 of 11)	intron (NM_001003698, intron 10 of 11)	77340	NM_001292008	6745	Hs.114033	NM_003144	HPRD:02924	SSR1	TRAPA	signal sequence receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_40115	chr17	8599940	8600414	+	8.00446	NA	Intergenic	Intergenic	47977	NM_144681	146849	Hs.121438	NM_144681	HPRD:08731	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_10530	chr1	226926922	226927178	+	8.00446	NA	promoter-TSS (NM_002221)	promoter-TSS (NM_002221)	-174	NM_002221	3707	Hs.528087	NM_002221	HPRD:00942	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
19-PTNLD28-TUMOR_peak_68149	chr3	49718416	49718582	+	8.00420	NA	intron (NM_001640, intron 14 of 21)	intron (NM_001640, intron 14 of 21)	7064	NM_001640	327	Hs.517969	NM_001640	HPRD:00034	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_5243	chr1	104247984	104248148	+	8.00420	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-8993	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_19138	chr11	64073670	64073854	+	8.00361	NA	promoter-TSS (NM_001282450)	promoter-TSS (NM_001282450)	63	NM_001282450	2101	Hs.110849	NM_004451	HPRD:07210	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen-related receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_47951	chr19	17890343	17890483	+	8.00361	NA	intron (NM_015122, intron 20 of 28)	L2a|LINE|L2	-15506	NM_014256	10331	Hs.69009	NM_014256	HPRD:10431	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_65787	chr22	43336320	43336564	+	8.00327	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	6605	NM_007229	11252	Hs.162877	NM_007229	HPRD:05390	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
19-PTNLD28-TUMOR_peak_67474	chr3	34460059	34460248	+	8.00327	NA	Intergenic	L1PA2|LINE|L1	620090	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_4168	chr1	66987595	66987721	+	8.00327	NA	Intergenic	ERVL-E-int|LTR|ERVL	-12167	NM_032291	84251	Hs.132121	NM_032291	HPRD:10910	SGIP1	-	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78900	chr5	10538820	10539164	+	8.00327	NA	Intergenic	Intergenic	-25443	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
19-PTNLD28-TUMOR_peak_106340	chr9	131988216	131988403	+	8.00327	NA	Intergenic	Intergenic	-47769	NM_203434	389792	Hs.529857	NM_203434	HPRD:17128	IER5L	bA247A12.2	immediate early response 5-like	protein-coding
19-PTNLD28-TUMOR_peak_108546	chrX	63521892	63521993	+	8.00327	NA	intron (NM_017677, intron 12 of 13)	L1PA2|LINE|L1	-71431	NM_130388	142689	Hs.56281	NM_130388	HPRD:06451	ASB12	-	ankyrin repeat and SOCS box containing 12	protein-coding
19-PTNLD28-TUMOR_peak_66465	chr3	9601095	9601328	+	8.00327	NA	Intergenic	SVA_D|Other|Other	-5725	NM_198560	375323	Hs.56782	NM_198560		LHFPL4	-	lipoma HMGIC fusion partner-like 4	protein-coding
19-PTNLD28-TUMOR_peak_56275	chr2	150802197	150802338	+	8.00327	NA	Intergenic	L1PA2|LINE|L1	-357937	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_7782	chr1	162826196	162826327	+	8.00327	NA	intron (NM_178550, intron 2 of 3)	intron (NM_178550, intron 2 of 3)	12344	NM_178550	339512	Hs.407631	NM_178550	HPRD:14661	C1orf110	-	chromosome 1 open reading frame 110	protein-coding
19-PTNLD28-TUMOR_peak_56548	chr2	159921587	159921739	+	8.00327	NA	intron (NM_001145909, intron 2 of 26)	intron (NM_001145909, intron 2 of 26)	96517	NM_033394	85461	Hs.61590	NM_033394	HPRD:18146	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_51216	chr2	12768803	12769058	+	8.00327	NA	Intergenic	HERVH-int|LTR|ERV1	-88068	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_67119	chr3	23024624	23024972	+	8.00327	NA	Intergenic	Intergenic	-219986	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_77314	chr4	141948639	141948872	+	8.00327	NA	intron (NM_020724, intron 1 of 6)	MLT1J1|LTR|ERVL-MaLR	105861	NM_020724	57484	Hs.659104	NM_020724	HPRD:15258	RNF150	-	ring finger protein 150	protein-coding
19-PTNLD28-TUMOR_peak_38862	chr16	78996514	78996609	+	8.00327	NA	intron (NM_001291997, intron 7 of 7)	L1ME3|LINE|L1	638061	NM_005360	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_53175	chr2	66156847	66157014	+	8.00327	NA	Intergenic	L1PA3|LINE|L1	428530	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_43324	chr17	72489535	72489727	+	8.00327	NA	Intergenic	Intergenic	27109	NM_001256841	11314	Hs.9688	NM_007261	HPRD:09492	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
19-PTNLD28-TUMOR_peak_15171	chr10	100206452	100206751	+	8.00327	NA	5' UTR (NM_000195, exon 1 of 20)	5' UTR (NM_000195, exon 1 of 20)	103	NM_182639	3257	Hs.404568	NM_000195	HPRD:05403	HPS1	HPS	Hermansky-Pudlak syndrome 1	protein-coding
19-PTNLD28-TUMOR_peak_101068	chr8	133418114	133418220	+	8.00327	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	41342	NM_001204824	3786	Hs.374023	NM_004519	HPRD:09077	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel, KQT-like subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_3786	chr1	58532943	58533133	+	8.00327	NA	intron (NM_021080, intron 1 of 16)	intron (NM_021080, intron 1 of 16)	183173	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104822	chr9	99424119	99424247	+	8.00327	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-6584	NM_153698	195827	Hs.44640	NM_153698		AAED1	C9orf21	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74335	chr4	8342561	8342676	+	8.00302	NA	Intergenic	Intergenic	71126	NM_053044	94031	Hs.479119	NM_053044	HPRD:08821	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_20430	chr11	86194973	86195127	+	8.00302	NA	intron (NM_001014811, intron 6 of 13)	intron (NM_001014811, intron 6 of 13)	109272	NM_021827	60494	Hs.144913	NM_021827	HPRD:08032	CCDC81	-	coiled-coil domain containing 81	protein-coding
19-PTNLD28-TUMOR_peak_86278	chr6	27862236	27862374	+	8.00276	NA	TTS (NM_003527)	TTS (NM_003527)	1102	NM_003527	8348	Hs.484991	NM_003527	HPRD:11904	HIST1H2BO	H2B.2|H2B/n|H2BFN|dJ193B12.2	histone cluster 1, H2bo	protein-coding
19-PTNLD28-TUMOR_peak_2421	chr1	36673016	36673264	+	8.00146	NA	Intergenic	Intergenic	-16877	NM_005119	9967	Hs.744057	NM_005119	HPRD:07543	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_103041	chr9	38069168	38069264	+	8.00146	NA	promoter-TSS (NM_003028)	promoter-TSS (NM_003028)	-6	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_49994	chr19	51276776	51276911	+	7.99786	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	3122	NM_001506	2854	Hs.515555	NM_001506	HPRD:04430	GPR32	RVDR1	G protein-coupled receptor 32	protein-coding
19-PTNLD28-TUMOR_peak_90051	chr6	151561345	151561560	+	7.99786	NA	intron (NM_005100, intron 1 of 4)	CpG	318	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_69354	chr3	97540384	97540495	+	7.99786	NA	promoter-TSS (NM_153605)	promoter-TSS (NM_153605)	-445	NM_153605	131544	Hs.733378	NM_153605		CRYBG3	DKFZp667G2110	beta-gamma crystallin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_101525	chr8	143284764	143284952	+	7.99786	NA	intron (NR_024378, intron 1 of 2)	intron (NR_024378, intron 1 of 2)	5141	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
19-PTNLD28-TUMOR_peak_9128	chr1	200385888	200385987	+	7.99786	NA	Intergenic	AluY|SINE|Alu	-6751	NM_012482	23528	Hs.59757	NM_012482	HPRD:11702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
19-PTNLD28-TUMOR_peak_53462	chr2	73114557	73114797	+	7.99786	NA	exon (NM_003124, exon 1 of 3)	exon (NM_003124, exon 1 of 3)	165	NM_003124	6697	Hs.301540	NM_003124	HPRD:01632	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
19-PTNLD28-TUMOR_peak_2755	chr1	40943332	40943477	+	7.99786	NA	5' UTR (NM_198494, exon 1 of 6)	5' UTR (NM_198494, exon 1 of 6)	102	NM_198494	339559	Hs.434385	NM_198494	HPRD:15883	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_90705	chr7	41612	41815	+	7.99786	NA	Intergenic	LTR8A|LTR|ERV1	-108005	NR_108065	100507642	Hs.557780	NR_108064		LOC100507642	-	uncharacterized LOC100507642	ncRNA
19-PTNLD28-TUMOR_peak_11014	chr1	234767079	234767255	+	7.99786	NA	intron (NR_033927, intron 1 of 1)	AluY|SINE|Alu	2110	NR_033927	100302691	Hs.209162	NR_033927	ENSG00000224939	LINC00184	HANC|NCRNA00184	long intergenic non-protein coding RNA 184	ncRNA
19-PTNLD28-TUMOR_peak_28087	chr13	45563851	45563953	+	7.99786	NA	promoter-TSS (NM_012345)	promoter-TSS (NM_012345)	215	NM_018559	55425	Hs.731811	NM_018559	HPRD:17225	GPALPP1	KIAA1704|LSR7|bA245H20.2	GPALPP motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_65572	chr22	39705395	39705505	+	7.99786	NA	Intergenic	Intergenic	4466	NR_000028	116938		NR_000028		SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
19-PTNLD28-TUMOR_peak_50870	chr2	5796495	5796603	+	7.99786	NA	intron (NR_110580, intron 2 of 4)	intron (NR_110580, intron 2 of 4)	34701	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
19-PTNLD28-TUMOR_peak_108224	chrX	48352635	48352736	+	7.99786	NA	Intergenic	Intergenic	-14662	NM_022825	64840	Hs.386453	NM_022825	HPRD:06680	PORCN	DHOF|FODH|MG61|PORC|PPN	porcupine homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_24532	chr12	54509961	54510091	+	7.99786	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	-9829	NR_026656	400043	Hs.19193	NR_026656	ENSG00000250742	LOC400043	-	uncharacterized LOC400043	ncRNA
19-PTNLD28-TUMOR_peak_63711	chr21	43346636	43346864	+	7.99786	NA	promoter-TSS (NM_199050)	promoter-TSS (NM_199050)	49	NM_199050	25966	Hs.473894	NM_015500	HPRD:10745	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium-dependent domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_61700	chr20	48212797	48213136	+	7.99663	NA	Intergenic	Intergenic	-28259	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_93382	chr7	74860832	74860930	+	7.99435	NA	intron (NM_001145064, intron 1 of 8)	MLT1L|LTR|ERVL-MaLR	6628	NM_001145064	729438	Hs.647031	NM_001145064		GATSL2	GATSL1	GATS protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_9619	chr1	205342300	205342560	+	7.99435	NA	promoter-TSS (NR_038425)	promoter-TSS (NR_038425)	50	NR_038425	284576	Hs.585440	NR_038425	ENSG00000226235	LEMD1-AS1	-	LEMD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96219	chr7	149320676	149320866	+	7.99319	NA	intron (NR_027788, intron 1 of 7)	L2b|LINE|L2	1110	NR_027788	79970	Hs.520785	NM_024910	HPRD:07791	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62607	chr20	62321169	62321276	+	7.99319	NA	intron (NM_001283009, intron 24 of 34)	CpG-17026	-6782	NM_003823	8771	Hs.434878	NM_003823	HPRD:04527	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	tumor necrosis factor receptor superfamily, member 6b, decoy	protein-coding
19-PTNLD28-TUMOR_peak_79753	chr5	44809427	44809640	+	7.99254	NA	promoter-TSS (NR_109862)	promoter-TSS (NR_109862)	506	NM_016640	10884	Hs.124165	NM_016640	HPRD:17597	MRPS30	MRP-S30|PAP|PDCD9|S30mt	mitochondrial ribosomal protein S30	protein-coding
19-PTNLD28-TUMOR_peak_10628	chr1	228565904	228566113	+	7.98619	NA	exon (NM_001098623, exon 104 of 105)	exon (NM_001098623, exon 104 of 105)	18802	NR_106800	102465444		NR_106800		MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
19-PTNLD28-TUMOR_peak_84241	chr5	175970175	175970283	+	7.98452	NA	intron (NM_001171976, intron 1 of 31)	CpG	717	NM_001171976	54825	Hs.4205	NM_017675	HPRD:15103	CDHR2	PCDH24|PCLKC	cadherin-related family member 2	protein-coding
19-PTNLD28-TUMOR_peak_34924	chr15	84047967	84048160	+	7.98452	NA	Intergenic	CpG	-67917	NM_001301109	6457	Hs.270055	NM_003027	HPRD:04528	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3-domain GRB2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_2463	chr1	37116178	37116331	+	7.98297	NA	Intergenic	Intergenic	-167339	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_72430	chr3	174251172	174251327	+	7.98297	NA	Intergenic	Intergenic	-325862	NM_207015	254827	Hs.565848	NM_207015	HPRD:16388	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_13837	chr10	63595761	63595937	+	7.98297	NA	Intergenic	Intergenic	-65164	NM_032199	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_49552	chr19	47516273	47516485	+	7.98297	NA	Intergenic	Intergenic	-7764	NM_002517	4861	Hs.79564	NM_002517	HPRD:09136	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_29338	chr14	21100365	21100473	+	7.98297	NA	Intergenic	Intergenic	9431	NM_001001968	341799	Hs.513132	NM_001001968	HPRD:17779	OR6S1	OR14-37|OR6S1Q	olfactory receptor, family 6, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_9775	chr1	206866437	206866643	+	7.98297	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	8175	NM_004759	9261	Hs.643566	NM_004759	HPRD:11882	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_93395	chr7	75028636	75028819	+	7.98280	NA	intron (NM_198853, intron 2 of 4)	intron (NM_198853, intron 2 of 4)	3824	NM_198853	378108	Hs.645328	NM_198853	HPRD:15567	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
19-PTNLD28-TUMOR_peak_10433	chr1	225841012	225841391	+	7.98280	NA	promoter-TSS (NM_018212)	promoter-TSS (NM_018212)	-356	NM_018212	55740	Hs.497893	NM_018212	HPRD:12360	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_73028	chr3	187465907	187466070	+	7.98280	NA	Intergenic	Intergenic	-2475	NM_001706	604	Hs.478588	NM_001706	HPRD:00180	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding
19-PTNLD28-TUMOR_peak_61436	chr20	45032004	45032117	+	7.97799	NA	intron (NM_133171, intron 1 of 21)	MER102a|DNA|hAT-Charlie	3211	NM_182764	63916	Hs.210469	NM_022086	HPRD:12103	ELMO2	CED-12|CED12|ELMO-2	engulfment and cell motility 2	protein-coding
19-PTNLD28-TUMOR_peak_97159	chr8	11324302	11324443	+	7.97794	NA	promoter-TSS (NM_053279)	promoter-TSS (NM_053279)	-96	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_61513	chr20	46020967	46021099	+	7.97794	NA	Intergenic	Intergenic	-35400	NM_183048	23613	Hs.446240	NM_012408	HPRD:10166	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger, MYND-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_93160	chr7	72722335	72722575	+	7.97794	NA	exon (NM_001168348, exon 2 of 9)	exon (NM_001168348, exon 2 of 9)	409	NM_018044	55695	Hs.510927	NM_018044	HPRD:11678	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120	NOP2/Sun domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_99314	chr8	81398723	81398988	+	7.97794	NA	5' UTR (NM_001105539, exon 1 of 6)	5' UTR (NM_001105539, exon 1 of 6)	407	NM_001105539	65986	Hs.591868	NM_023929	HPRD:15689	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_56968	chr2	172968703	172968799	+	7.97794	NA	Intergenic	Intergenic	-1273	NM_004405	1746	Hs.419	NM_004405	HPRD:00527	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_100643	chr8	126104257	126104355	+	7.97794	NA	promoter-TSS (NM_014846)	promoter-TSS (NM_014846)	223	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_5382	chr1	110006091	110006212	+	7.97794	NA	Intergenic	AluSz|SINE|Alu	-2949	NM_001040709	284612	Hs.528366	NM_001006603	HPRD:17478	SYPL2	MG29	synaptophysin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_25880	chr12	103828388	103828706	+	7.97642	NA	intron (NM_198521, intron 2 of 5)	L1PA2|LINE|L1	61241	NR_103526	374470	Hs.534649	NM_198521	HPRD:13393	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
19-PTNLD28-TUMOR_peak_26013	chr12	106424611	106424795	+	7.97642	NA	Intergenic	LTR85a|LTR|Gypsy?	109108	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_107830	chrX	24444733	24444874	+	7.97642	NA	Intergenic	Intergenic	-38541	NM_001142386	5165	Hs.296031	NM_005391	HPRD:03956	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase, isozyme 3	protein-coding
19-PTNLD28-TUMOR_peak_35220	chr15	91074073	91074185	+	7.97642	NA	intron (NM_001042574, intron 1 of 14)	intron (NM_001042574, intron 1 of 14)	1011	NM_022769	64784	Hs.567572	NM_022769	HPRD:13384	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_78418	chr4	187475789	187475922	+	7.97642	NA	intron (NM_005958, intron 1 of 1)	intron (NM_005958, intron 1 of 1)	682	NM_005958	4543	Hs.243467	NM_005958	HPRD:02812	MTNR1A	MEL-1A-R|MT1	melatonin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_24286	chr12	52398035	52398140	+	7.97642	NA	Intergenic	Intergenic	-2642	NM_181711	160622	Hs.407202	NM_181711	HPRD:17077	GRASP	TAMALIN	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
19-PTNLD28-TUMOR_peak_61549	chr20	46486400	46486525	+	7.97642	NA	Intergenic	Intergenic	-71102	NM_198596	55959	Hs.162016	NM_018837	HPRD:18130	SULF2	HSULF-2	sulfatase 2	protein-coding
19-PTNLD28-TUMOR_peak_84294	chr5	176745009	176745186	+	7.97642	NA	Intergenic	MER21-int|LTR|ERVL	-5805	NM_001142935	83463	Hs.743332	NM_031300	HPRD:14791	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
19-PTNLD28-TUMOR_peak_57112	chr2	176944716	176944834	+	7.97642	NA	TTS (NM_001080458)	TTS (NM_001080458)	3915	NM_001080458	344191	Hs.452341	NM_001080458		EVX2	EVX-2	even-skipped homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_31494	chr14	80051129	80051255	+	7.97642	NA	intron (NM_001272020, intron 2 of 5)	intron (NM_001272020, intron 2 of 5)	305510	NR_073546	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_89580	chr6	136388870	136389069	+	7.97642	NA	intron (NM_018945, intron 2 of 12)	intron (NM_018945, intron 2 of 12)	182480	NM_138419	113115	Hs.121536	NM_138419	HPRD:16884	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_74442	chr4	9599306	9599417	+	7.97642	NA	Intergenic	Intergenic	-41424	NR_031688	100302277		NR_031688	miRBase:MI0006422	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2	microRNA 548i-2	ncRNA
19-PTNLD28-TUMOR_peak_62419	chr20	58326253	58326411	+	7.97642	NA	intron (NM_001281507, intron 3 of 12)	intron (NM_001281507, intron 3 of 12)	30067	NM_183244	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_70510	chr3	126660676	126660777	+	7.97642	NA	intron (NM_032343, intron 6 of 7)	L1MC4|LINE|L1	-46711	NM_032242	5361	Hs.432329	NM_032242	HPRD:11868	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
19-PTNLD28-TUMOR_peak_47733	chr19	15564113	15564209	+	7.97319	NA	exon (NM_022904, exon 15 of 18)	exon (NM_022904, exon 15 of 18)	-3399	NM_021241	58525	Hs.442138	NM_021241	ENSG00000011451	WIZ	ZNF803	widely interspaced zinc finger motifs	protein-coding
19-PTNLD28-TUMOR_peak_54475	chr2	100898120	100898230	+	7.97319	NA	3' UTR (NM_198461, exon 12 of 12)	3' UTR (NM_198461, exon 12 of 12)	41020	NM_198461	164832	Hs.21380	NM_198461	HPRD:13503	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_101245	chr8	136469670	136469822	+	7.97319	NA	promoter-TSS (NM_006558)	promoter-TSS (NM_006558)	30	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_25202	chr12	69751362	69751473	+	7.97319	NA	Intergenic	Intergenic	-2073	NM_001300950	8089	Hs.4029	NM_006530	HPRD:03666	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_37483	chr16	33356394	33356600	+	7.96977	NA	Intergenic	Intergenic	-57795	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_45491	chr18	43833566	43833735	+	7.96866	NA	intron (NM_145055, intron 3 of 4)	intron (NM_145055, intron 3 of 4)	79662	NM_145055	147339	Hs.116486	NM_145055	HPRD:12690	C18orf25	ARKL1|RNF111L1	chromosome 18 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_26282	chr12	110983186	110983349	+	7.96866	NA	intron (NM_139283, intron 3 of 5)	intron (NM_139283, intron 3 of 5)	37797	NM_139283	160760	Hs.13854	NM_139283		PPTC7	TA-PP2C|TAPP2C	PTC7 protein phosphatase homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_96961	chr8	7247369	7247770	+	7.96866	NA	Intergenic	Intergenic	26785	NM_001205266	100289462	Hs.740237	NM_001205266	ENSG00000177257	DEFB4B	DEFB4P	defensin, beta 4B	protein-coding
19-PTNLD28-TUMOR_peak_46108	chr18	60987360	60987649	+	7.96866	NA	promoter-TSS (NM_000633)	promoter-TSS (NM_000633)	-891	NM_000657	596	Hs.150749	NM_000633	HPRD:01045	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
19-PTNLD28-TUMOR_peak_32941	chr15	32952711	32952853	+	7.96866	NA	intron (NM_001144757, intron 2 of 5)	intron (NM_001144757, intron 2 of 5)	18912	NM_003020	6447	Hs.156540	NM_003020	HPRD:01410	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V (7B2 protein)	protein-coding
19-PTNLD28-TUMOR_peak_38226	chr16	66443212	66443305	+	7.96866	NA	intron (NR_046242, intron 1 of 1)	LTR37A|LTR|ERV1	831	NR_046242	100505865	Hs.314372	NR_046242		LINC00920	-	long intergenic non-protein coding RNA 920	ncRNA
19-PTNLD28-TUMOR_peak_61853	chr20	49330292	49330450	+	7.96866	NA	Intergenic	Intergenic	-17710	NM_032521	84612	Hs.589848	NM_032521	HPRD:18703	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_73975	chr4	3390146	3390290	+	7.96490	NA	intron (NM_198227, intron 2 of 15)	MIRb|SINE|MIR	18494	NM_198227	6002	Hs.527061	NM_002926	HPRD:03943	RGS12	-	regulator of G-protein signaling 12	protein-coding
19-PTNLD28-TUMOR_peak_5237	chr1	104189067	104189231	+	7.96490	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-8992	NM_001008221	276	Hs.655232	NM_004038	HPRD:00096	AMY1A	AMY1	amylase, alpha 1A (salivary)	protein-coding
19-PTNLD28-TUMOR_peak_19239	chr11	65078367	65078485	+	7.96490	NA	Intergenic	Intergenic	-3863	NM_006779	10435	Hs.343380	NM_006779	HPRD:09363	CDC42EP2	BORG1|CEP2	CDC42 effector protein (Rho GTPase binding) 2	protein-coding
19-PTNLD28-TUMOR_peak_12921	chr10	35256390	35256527	+	7.96149	NA	Intergenic	Intergenic	106800	NM_001198779	8453	Hs.82919	NM_003591	HPRD:06786	CUL2	-	cullin 2	protein-coding
19-PTNLD28-TUMOR_peak_55322	chr2	120887695	120887879	+	7.96149	NA	intron (NM_020909, intron 17 of 24)	L3|LINE|CR1	93197	NM_024121	79134	Hs.376722	NM_024121		TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
19-PTNLD28-TUMOR_peak_79274	chr5	27906760	27906887	+	7.96149	NA	Intergenic	Intergenic	434424	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
19-PTNLD28-TUMOR_peak_49830	chr19	49891257	49891351	+	7.96149	NA	promoter-TSS (NM_144688)	promoter-TSS (NM_144688)	34	NR_110729	101928295	Hs.640180	NR_110729	ENSG00000268686	LOC101928295	-	uncharacterized LOC101928295	ncRNA
19-PTNLD28-TUMOR_peak_2174	chr1	33255038	33255155	+	7.96149	NA	intron (NM_003680, intron 6 of 12)	intron (NM_003680, intron 6 of 12)	23861	NM_001198972	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
19-PTNLD28-TUMOR_peak_86043	chr6	25313035	25313181	+	7.96149	NA	intron (NM_017640, intron 2 of 36)	intron (NM_017640, intron 2 of 36)	33452	NM_001173977	55604	Hs.649550	NM_017640	HPRD:11285	LRRC16A	CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5	leucine rich repeat containing 16A	protein-coding
19-PTNLD28-TUMOR_peak_4888	chr1	93400391	93400510	+	7.96149	NA	intron (NM_001252273, intron 1 of 4)	intron (NM_001252273, intron 1 of 4)	26629	NM_001252269	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_49995	chr19	51277484	51277640	+	7.96149	NA	Intergenic	AluJb|SINE|Alu	3841	NM_001506	2854	Hs.515555	NM_001506	HPRD:04430	GPR32	RVDR1	G protein-coupled receptor 32	protein-coding
19-PTNLD28-TUMOR_peak_65864	chr22	44841695	44841830	+	7.96149	NA	Intergenic	Intergenic	2555	NR_109966	101927526	Hs.339290	NR_109966	ENSG00000232655	LOC101927526	-	uncharacterized LOC101927526	ncRNA
19-PTNLD28-TUMOR_peak_85388	chr6	11938834	11938993	+	7.95585	NA	Intergenic	Intergenic	-73811	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_69721	chr3	111387838	111388021	+	7.95585	NA	Intergenic	Intergenic	-5594	NM_001185106	257068	Hs.477114	NM_153268	HPRD:07114	PLCXD2	-	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_48511	chr19	32988450	32988673	+	7.95585	NA	Intergenic	LTR13A|LTR|ERVK	-83533	NM_004708	9141	Hs.443831	NM_004708	HPRD:06843	PDCD5	TFAR19	programmed cell death 5	protein-coding
19-PTNLD28-TUMOR_peak_12846	chr10	33261446	33261662	+	7.95585	NA	Intergenic	Tigger12c|DNA|TcMar-Tigger	-14261	NM_002211	3688	Hs.643813	NM_002211	HPRD:00628	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	protein-coding
19-PTNLD28-TUMOR_peak_36375	chr16	13011681	13011818	+	7.95585	NA	intron (NM_001145204, intron 2 of 4)	intron (NM_001145204, intron 2 of 4)	16272	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_27075	chr12	126568595	126568719	+	7.95585	NA	Intergenic	Intergenic	-11881	NR_110053	101927464	Hs.443932	NR_110053	ENSG00000256342	LOC101927464	-	uncharacterized LOC101927464	ncRNA
19-PTNLD28-TUMOR_peak_68029	chr3	48236023	48236137	+	7.95585	NA	Intergenic	Intergenic	-1974	NR_039645	100616407		NR_039645	miRBase:MI0016786	MIR4443	-	microRNA 4443	ncRNA
19-PTNLD28-TUMOR_peak_2509	chr1	37964836	37965114	+	7.95585	NA	intron (NR_073092, intron 6 of 8)	intron (NR_073092, intron 6 of 8)	1620	NR_049844	100847010		NR_049844		MIR5581	-	microRNA 5581	ncRNA
19-PTNLD28-TUMOR_peak_24088	chr12	49277545	49277811	+	7.95585	NA	Intergenic	Intergenic	-18025	NM_014470	27289	Hs.124940	NM_014470	HPRD:12357	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_58924	chr2	234614820	234614953	+	7.95585	NA	intron (NM_205862, intron 2 of 5)	intron (NM_205862, intron 2 of 5)	-6752	NM_019078	54579	Hs.554822	NM_019078	HPRD:07335	UGT1A5	UDPGT|UDPGT 1-5|UGT1E	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding
19-PTNLD28-TUMOR_peak_42502	chr17	55730406	55730622	+	7.95585	NA	intron (NM_138962, intron 11 of 13)	intron (NM_138962, intron 11 of 13)	-44741	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_109016	chrX	102862716	102863216	+	7.95585	NA	5' UTR (NM_032926, exon 1 of 3)	5' UTR (NM_032926, exon 1 of 3)	132	NM_032926	85012	Hs.311776	NM_032926	HPRD:06636	TCEAL3	WEX8	transcription elongation factor A (SII)-like 3	protein-coding
19-PTNLD28-TUMOR_peak_98717	chr8	52432918	52433040	+	7.95585	NA	intron (NM_144651, intron 4 of 22)	intron (NM_144651, intron 4 of 22)	289026	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_107969	chrX	39672983	39673106	+	7.95585	NA	Intergenic	Intergenic	283675	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_35307	chr15	93340401	93340616	+	7.95585	NA	TTS (NR_033769)	TTS (NR_033769)	1794	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_109002	chrX	102319017	102319224	+	7.95585	NA	promoter-TSS (NM_018476)	promoter-TSS (NM_018476)	48	NM_018476	55859	Hs.334370	NM_018476	HPRD:06460	BEX1	BEX2|HBEX2|HGR74-h	brain expressed, X-linked 1	protein-coding
19-PTNLD28-TUMOR_peak_41915	chr17	44919110	44919402	+	7.95585	NA	Intergenic	Intergenic	-9712	NM_003396	7484	Hs.326420	NM_003396	HPRD:04180	WNT9B	WNT14B|WNT15	wingless-type MMTV integration site family, member 9B	protein-coding
19-PTNLD28-TUMOR_peak_29709	chr14	31464574	31464680	+	7.95585	NA	intron (NM_014574, intron 1 of 15)	MIR3|SINE|MIR	19321	NR_030354	693209		NR_030354		MIR624	MIRN624|hsa-mir-624	microRNA 624	ncRNA
19-PTNLD28-TUMOR_peak_98418	chr8	41656820	41657034	+	7.95585	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	-1787	NM_020476	286	Hs.654438	NM_000037	HPRD:01693	ANK1	ANK|SPH1|SPH2	ankyrin 1, erythrocytic	protein-coding
19-PTNLD28-TUMOR_peak_70533	chr3	126952364	126952453	+	7.95585	NA	Intergenic	Intergenic	40434	NM_001007534	285311	Hs.591284	NM_001007534	HPRD:16949	C3orf56	-	chromosome 3 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_18416	chr11	46639360	46639528	+	7.95409	NA	promoter-TSS (NM_173811)	promoter-TSS (NM_173811)	618	NM_001142673	9776	Hs.127403	NM_014741	HPRD:13809	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
19-PTNLD28-TUMOR_peak_105898	chr9	124400276	124400419	+	7.95409	NA	intron (NM_032552, intron 1 of 16)	intron (NM_032552, intron 1 of 16)	70966	NM_032552	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_70831	chr3	131259814	131259939	+	7.95409	NA	intron (NM_001289112, intron 15 of 15)	intron (NM_001289112, intron 15 of 15)	-38016	NM_007208	11222	Hs.205163	NM_007208	HPRD:06175	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_41759	chr17	43047893	43048001	+	7.95409	NA	Intergenic	CpG	-2303	NM_006688	10882	Hs.134012	NM_006688	HPRD:12712	C1QL1	C1QRF|C1QTNF14|CRF	complement component 1, q subcomponent-like 1	protein-coding
19-PTNLD28-TUMOR_peak_74449	chr4	9705245	9705375	+	7.95220	NA	Intergenic	Intergenic	-77948	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_24458	chr12	53615366	53615661	+	7.95220	NA	intron (NM_001243730, intron 2 of 8)	GC_rich|Low_complexity|Low_complexity	-1316	NM_001042728	5916	Hs.1497	NM_000966	HPRD:01573	RARG	NR1B3|RARC	retinoic acid receptor, gamma	protein-coding
19-PTNLD28-TUMOR_peak_94403	chr7	100875097	100875267	+	7.95149	NA	TTS (NM_001185080)	TTS (NM_001185080)	6045	NM_014343	24146	Hs.38738	NM_014343	HPRD:13065	CLDN15	-	claudin 15	protein-coding
19-PTNLD28-TUMOR_peak_106704	chr9	138661730	138661863	+	7.95097	NA	exon (NM_020822, exon 16 of 31)	exon (NM_020822, exon 16 of 31)	67765	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	potassium channel, subfamily T, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22287	chr11	133817322	133817439	+	7.95097	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	9269	NM_001277285	22997	Hs.204121	NM_014987	ENSG00000080854	IGSF9B	-	immunoglobulin superfamily, member 9B	protein-coding
19-PTNLD28-TUMOR_peak_89366	chr6	125711051	125711360	+	7.95097	NA	Intergenic	SVA_E|Other|Other	-87923	NM_016063	51020	Hs.32826	NM_016063	HPRD:12897	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_82883	chr5	142629516	142629686	+	7.95097	NA	Intergenic	Intergenic	153653	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_38585	chr16	70973985	70974175	+	7.95097	NA	intron (NM_001270974, intron 43 of 85)	intron (NM_001270974, intron 43 of 85)	-139019	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_98619	chr8	48269893	48270013	+	7.94740	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	96483	NM_001080394	23514	Hs.381058	NM_001080394	ENSG00000164808	SPIDR	KIAA0146	scaffolding protein involved in DNA repair	protein-coding
19-PTNLD28-TUMOR_peak_94858	chr7	112089521	112089644	+	7.94740	NA	promoter-TSS (NR_120333)	promoter-TSS (NR_120333)	-901	NM_001550	3475	Hs.7879	NM_001550		IFRD1	PC4|TIS7	interferon-related developmental regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_2195	chr1	33457142	33457297	+	7.94601	NA	Intergenic	Intergenic	-26805	NM_001127361	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_70409	chr3	125321661	125321840	+	7.94601	NA	Intergenic	Intergenic	-7369	NM_022776	114885	Hs.477440	NM_022776	HPRD:09481	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein-like 11	protein-coding
19-PTNLD28-TUMOR_peak_105516	chr9	116160552	116160692	+	7.94546	NA	intron (NM_000031, intron 1 of 11)	MIRb|SINE|MIR	2996	NM_000031	210	Hs.1227	NM_000031	HPRD:00504	ALAD	ALADH|PBGS	aminolevulinate dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_62592	chr20	62185468	62185597	+	7.94362	NA	intron (NM_024059, intron 1 of 1)	CpG	1159	NM_024059	79025	Hs.197755	NM_024059	HPRD:14682	C20orf195	-	chromosome 20 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_106576	chr9	136126149	136126275	+	7.93957	NA	Intergenic	MER4B|LTR|ERV1	24418	NM_020469	28	Hs.654423	NM_020469		ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_26869	chr12	123315522	123315662	+	7.93957	NA	Intergenic	L2c|LINE|L2	-4447	NM_003959	9026	Hs.524815	NM_003959	HPRD:10412	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
19-PTNLD28-TUMOR_peak_288	chr1	3537685	3537964	+	7.93957	NA	Intergenic	LTR13|LTR|ERVK	-3732	NM_182752	127262	Hs.20529	NM_182752	HPRD:14037	TPRG1L	FAM79A|h-mover|mover	tumor protein p63 regulated 1-like	protein-coding
19-PTNLD28-TUMOR_peak_1454	chr1	23730755	23730852	+	7.93957	NA	intron (NM_003196, intron 5 of 10)	L2b|LINE|L2	20458	NM_003196	6920	Hs.446354	NM_003196	HPRD:16036	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A (SII), 3	protein-coding
19-PTNLD28-TUMOR_peak_98663	chr8	49321973	49322091	+	7.93957	NA	Intergenic	Intergenic	-142095	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_11605	chr10	530977	531153	+	7.93552	NA	intron (NM_014974, intron 2 of 36)	CpG	156653	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_100960	chr8	131260876	131261016	+	7.93552	NA	intron (NM_018482, intron 3 of 29)	intron (NM_018482, intron 3 of 29)	47833	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_78712	chr5	2490942	2491044	+	7.93552	NA	Intergenic	Intergenic	-178678	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
19-PTNLD28-TUMOR_peak_39083	chr16	84374037	84374223	+	7.93552	NA	Intergenic	Intergenic	-27999	NM_014861	9914	Hs.6168	NM_014861	HPRD:13812	ATP2C2	SPCA2	ATPase, Ca++ transporting, type 2C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_38510	chr16	69895240	69895486	+	7.93552	NA	intron (NM_001270454, intron 6 of 23)	intron (NM_001270454, intron 6 of 23)	22723	NM_001270453	11060	Hs.408458	NM_007014	HPRD:03812	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_32635	chr15	25923753	25924041	+	7.93552	NA	TTS (NM_024490)	TTS (NM_024490)	170075	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	ncRNA
19-PTNLD28-TUMOR_peak_53923	chr2	87379131	87379502	+	7.93552	NA	Intergenic	MER52-int|LTR|ERV1	-75780	NR_026846	285074	Hs.424184	NM_001012626	HPRD:17345	LOC285074	-	anaphase promoting complex subunit 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62204	chr20	55341607	55341941	+	7.93552	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	137416	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_14081	chr10	71661484	71661610	+	7.93552	NA	intron (NM_080800, intron 13 of 37)	intron (NM_080800, intron 13 of 37)	99903	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_81251	chr5	96044869	96045115	+	7.93552	NA	intron (NM_001284212, intron 1 of 27)	intron (NM_001284212, intron 1 of 27)	6450	NM_001284212	831	Hs.436186	NM_001750	HPRD:00233	CAST	BS-17	calpastatin	protein-coding
19-PTNLD28-TUMOR_peak_99493	chr8	92330495	92330584	+	7.93552	NA	exon (NM_134266, exon 5 of 19)	exon (NM_134266, exon 5 of 19)	69023	NM_052832	115111	Hs.354013	NM_052832	HPRD:10533	SLC26A7	SUT2	solute carrier family 26 (anion exchanger), member 7	protein-coding
19-PTNLD28-TUMOR_peak_91094	chr7	5596036	5596164	+	7.93408	NA	Intergenic	CpG	-25868	NM_001101	60	Hs.520640	NM_001101	HPRD:00032	ACTB	BRWS1|PS1TP5BP1	actin, beta	protein-coding
19-PTNLD28-TUMOR_peak_70978	chr3	134046545	134046734	+	7.93286	NA	Intergenic	Intergenic	40065	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
19-PTNLD28-TUMOR_peak_54300	chr2	97168845	97169016	+	7.93124	NA	intron (NR_104346, intron 1 of 3)	intron (NR_104346, intron 1 of 3)	2192	NM_001285486	93082	Hs.149219	NM_001080535	HPRD:14296	NEURL3	LINCR	neuralized E3 ubiquitin protein ligase 3	protein-coding
19-PTNLD28-TUMOR_peak_10230	chr1	222663002	222663172	+	7.92975	NA	Intergenic	Intergenic	58357	NM_024746	79802	Hs.665660	NM_024746	HPRD:08587	HHIPL2	KIAA1822L	HHIP-like 2	protein-coding
19-PTNLD28-TUMOR_peak_82442	chr5	137673369	137673536	+	7.92975	NA	promoter-TSS (NM_016605)	promoter-TSS (NM_016605)	228	NM_001135647	51307	Hs.54056	NM_016605	HPRD:10785	FAM53C	C5orf6	family with sequence similarity 53, member C	protein-coding
19-PTNLD28-TUMOR_peak_38308	chr16	67232956	67233093	+	7.92975	NA	promoter-TSS (NM_024712)	promoter-TSS (NM_024712)	-4	NM_024712	79767	Hs.377416	NM_024712	HPRD:12104	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
19-PTNLD28-TUMOR_peak_38720	chr16	75019911	75020028	+	7.92975	NA	promoter-TSS (NM_030581)	promoter-TSS (NM_030581)	-952	NM_030581	79726	Hs.280951	NM_030581	HPRD:13351	WDR59	-	WD repeat domain 59	protein-coding
19-PTNLD28-TUMOR_peak_23531	chr12	27678403	27678651	+	7.92975	NA	intron (NM_001198915, intron 1 of 26)	intron (NM_001198915, intron 1 of 26)	1482	NM_001198916	8496	Hs.172445	NM_003622	HPRD:04390	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
19-PTNLD28-TUMOR_peak_103583	chr9	69724441	69724565	+	7.92705	NA	Intergenic	TAR1|Satellite|telo	33281	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_19261	chr11	65203534	65203729	+	7.92705	NA	Intergenic	Intergenic	-8298	NR_030343	693197		NR_030343	miRBase:MI0003625	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
19-PTNLD28-TUMOR_peak_5150	chr1	100111361	100111700	+	7.92569	NA	promoter-TSS (NM_017734)	promoter-TSS (NM_017734)	99	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_29266	chr14	19688249	19688614	+	7.92569	NA	intron (NR_110526, intron 7 of 7).2	intron (NR_110526, intron 7 of 7).2	-7415	NR_073459	414763	Hs.617315	NR_073459	ENSG00000215394	BMS1P18	C14orf17|LINC00516	BMS1 pseudogene 18	pseudo
19-PTNLD28-TUMOR_peak_74690	chr4	19457978	19458113	+	7.92560	NA	Intergenic	Intergenic	-797142	NM_001289135	9353	Hs.29802	NM_004787	HPRD:04776	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_2125	chr1	32713929	32714075	+	7.92560	NA	exon (NM_032648, exon 2 of 2)	exon (NM_032648, exon 2 of 2)	1184	NM_032648	84734	Hs.18449	NM_032648	HPRD:14401	FAM167B	C1orf90	family with sequence similarity 167, member B	protein-coding
19-PTNLD28-TUMOR_peak_56874	chr2	170218383	170218613	+	7.92560	NA	intron (NM_004525, intron 1 of 78)	CpG	624	NM_004525	4036	Hs.657729	NM_004525	HPRD:02509	LRP2	DBS|GP330	low density lipoprotein receptor-related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_70556	chr3	127347791	127347955	+	7.92560	NA	promoter-TSS (NM_015720)	promoter-TSS (NM_015720)	-129	NM_015720	50512	Hs.591290	NM_015720	HPRD:15154	PODXL2	EG|PODLX2	podocalyxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_70709	chr3	129133114	129133252	+	7.92560	NA	intron (NM_207307, intron 4 of 8)	intron (NM_207307, intron 4 of 8)	14311	NM_207307	90288	Hs.652347	NM_207307	HPRD:11276	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
19-PTNLD28-TUMOR_peak_104552	chr9	93974447	93974573	+	7.92560	NA	Intergenic	Intergenic	-137096	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
19-PTNLD28-TUMOR_peak_29690	chr14	30394446	30394632	+	7.92560	NA	intron (NM_002742, intron 1 of 17)	intron (NM_002742, intron 1 of 17)	2360	NM_002742	5587	Hs.508999	NM_002742	HPRD:05668	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
19-PTNLD28-TUMOR_peak_64709	chr22	24191678	24192040	+	7.92560	NA	Intergenic	CpG	-7031	NR_104248	66035	Hs.661910	NM_030807	HPRD:11571	SLC2A11	GLUT10|GLUT11	solute carrier family 2 (facilitated glucose transporter), member 11	protein-coding
19-PTNLD28-TUMOR_peak_42968	chr17	63482157	63482661	+	7.92560	NA	Intergenic	Intergenic	75331	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_58080	chr2	208474541	208474661	+	7.92560	NA	3' UTR (NM_001127395, exon 4 of 4)	3' UTR (NM_001127395, exon 4 of 4)	15095	NM_145280	151194	Hs.664764	NM_145280	HPRD:14090	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase like 21A	protein-coding
19-PTNLD28-TUMOR_peak_40776	chr17	26797986	26798074	+	7.92560	NA	Intergenic	Intergenic	-2634	NM_003984	9058	Hs.102307	NM_003984	HPRD:09164	SLC13A2	NADC1|NaCT|NaDC-1|SDCT1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_21096	chr11	110854985	110855104	+	7.92560	NA	Intergenic	Intergenic	-271132	NM_001258418	57569	Hs.6136	NM_020809	HPRD:10657	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
19-PTNLD28-TUMOR_peak_34851	chr15	82779674	82779762	+	7.92560	NA	intron (NR_026811, intron 1 of 7)	AluY|SINE|Alu	18681	NR_033936	80154	Hs.454640	NM_025084		GOLGA2P10	-	golgin A2 pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_3839	chr1	59479083	59479176	+	7.92516	NA	Intergenic	Intergenic	-7019	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
19-PTNLD28-TUMOR_peak_101677	chr8	144932283	144932404	+	7.92516	NA	Intergenic	LTR5_Hs|LTR|ERVK	-9197	NM_178564	340371	Hs.521926	NM_178564	HPRD:14838	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_44902	chr18	21032782	21032886	+	7.92497	NA	promoter-TSS (NM_003831)	promoter-TSS (NM_003831)	47	NM_003831	8780	Hs.445511	NM_003831	HPRD:04659	RIOK3	SUDD	RIO kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_87093	chr6	36391711	36391917	+	7.92497	NA	intron (NM_152990, intron 3 of 4)	intron (NM_152990, intron 3 of 4)	-18730	NR_104480	222658	Hs.188757	NM_173562	HPRD:12895	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_3312	chr1	47902267	47902382	+	7.92118	NA	5' UTR (NM_004474, exon 1 of 1)	5' UTR (NM_004474, exon 1 of 1)	635	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_11611	chr10	656990	657091	+	7.91883	NA	intron (NM_014974, intron 1 of 36)	MSTA|LTR|ERVL-MaLR	30678	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_34465	chr15	74426854	74427000	+	7.91883	NA	exon (NM_001130138, exon 4 of 4)	exon (NM_001130138, exon 4 of 4)	4184	NM_020851	57611	Hs.254775	NM_020851	HPRD:13865	ISLR2	LINX	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding
19-PTNLD28-TUMOR_peak_36110	chr16	8164524	8164725	+	7.91883	NA	Intergenic	SVA_D|Other|Other	423204	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_37938	chr16	55786733	55786902	+	7.91883	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-7694	NR_003276	51716	Hs.721645	NM_016280	HPRD:07009	CES1P1	CES1A2|CES1A3|CES4|CESR|PCE-3	carboxylesterase 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_33837	chr15	60885193	60885326	+	7.91883	NA	promoter-TSS (NM_134262)	promoter-TSS (NM_134262)	-552	NM_134262	6095	Hs.560343	NM_002943	HPRD:02896	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR-related orphan receptor A	protein-coding
19-PTNLD28-TUMOR_peak_38064	chr16	57676771	57676913	+	7.91883	NA	intron (NM_001290142, intron 2 of 13)	intron (NM_001290142, intron 2 of 13)	3635	NM_001290144	9289	Hs.513633	NM_005682	HPRD:06824	GPR56	BFPP|BPPR|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
19-PTNLD28-TUMOR_peak_78654	chr5	1209522	1209645	+	7.91883	NA	intron (NM_001003841, intron 2 of 11)	intron (NM_001003841, intron 2 of 11)	7873	NM_001003841	340024	Hs.481478	NM_001003841	HPRD:10596	SLC6A19	B0AT1|HND	solute carrier family 6 (neutral amino acid transporter), member 19	protein-coding
19-PTNLD28-TUMOR_peak_51643	chr2	26205322	26205439	+	7.91057	NA	promoter-TSS (NM_002254)	promoter-TSS (NM_002254)	63	NM_002254	3797	Hs.21611	NM_002254	HPRD:04164	KIF3C	-	kinesin family member 3C	protein-coding
19-PTNLD28-TUMOR_peak_62761	chr21	11169603	11169705	+	7.91057	NA	Intergenic	Intergenic	-70717	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
19-PTNLD28-TUMOR_peak_38995	chr16	81813390	81813490	+	7.91057	NA	intron (NM_002661, intron 1 of 32)	CpG	577	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_39385	chr16	88785590	88785956	+	7.91057	NA	intron (NM_001142864, intron 44 of 50)	intron (NM_001142864, intron 44 of 50)	-3028	NR_039873	100616167		NR_039873		MIR4722	-	microRNA 4722	ncRNA
19-PTNLD28-TUMOR_peak_39538	chr16	90183476	90183737	+	7.91057	NA	Intergenic	Intergenic	-41268	NM_001098173	11105	Hs.406695	NM_052996	HPRD:17903	PRDM7	PFM4|ZNF910	PR domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_47576	chr19	14003767	14003963	+	7.91057	NA	intron (NM_024323, intron 4 of 7)	intron (NM_024323, intron 4 of 7)	13044	NM_024323	79173	Hs.143288	NM_024323	HPRD:14415	C19orf57	-	chromosome 19 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_48	chr1	621791	621973	+	7.91057	NA	exon (NM_001005277, exon 1 of 1).2	exon (NM_001005277, exon 1 of 1).2	152	NM_001005224	26683	Hs.632360	NM_001005224	HPRD:14972	OR4F3	-	olfactory receptor, family 4, subfamily F, member 3	protein-coding
19-PTNLD28-TUMOR_peak_12711	chr10	30319770	30319911	+	7.91037	NA	intron (NM_020848, intron 2 of 3)	MER5B|DNA|hAT-Charlie	28648	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_86246	chr6	27655341	27655492	+	7.91037	NA	Intergenic	CpG	-6398	NR_038293	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_70417	chr3	125363210	125363469	+	7.91037	NA	Intergenic	Intergenic	-48958	NM_022776	114885	Hs.477440	NM_022776	HPRD:09481	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein-like 11	protein-coding
19-PTNLD28-TUMOR_peak_16586	chr11	1593464	1593627	+	7.90911	NA	promoter-TSS (NM_004420)	promoter-TSS (NM_004420)	-395	NM_004420	1850	Hs.41688	NM_004420	HPRD:03617	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
19-PTNLD28-TUMOR_peak_61944	chr20	50384121	50384297	+	7.90911	NA	intron (NM_006045, intron 1 of 27)	CpG	699	NM_006045	10079	Hs.649234	NM_006045	HPRD:18541	ATP9A	ATPIIA	ATPase, class II, type 9A	protein-coding
19-PTNLD28-TUMOR_peak_31381	chr14	76899668	76900066	+	7.90907	NA	intron (NM_004452, intron 3 of 10)	intron (NM_004452, intron 3 of 10)	62177	NM_004452	2103	Hs.435845	NM_004452	HPRD:03700	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_94882	chr7	113383041	113383425	+	7.90907	NA	Intergenic	L1PA2|LINE|L1	175849	NM_002711	5506	Hs.458309	NM_002711	HPRD:02950	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1, regulatory subunit 3A	protein-coding
19-PTNLD28-TUMOR_peak_28054	chr13	44706902	44707143	+	7.90907	NA	intron (NR_104065, intron 1 of 4)	intron (NR_104065, intron 1 of 4)	-9442	NR_104064	101929212	Hs.534877	NR_104064		SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26703	chr12	121170900	121171006	+	7.90907	NA	intron (NM_000017, intron 2 of 9)	SVA_C|Other|Other	7382	NM_000017	35	Hs.507076	NM_000017	HPRD:06053	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase, C-2 to C-3 short chain	protein-coding
19-PTNLD28-TUMOR_peak_62407	chr20	57978849	57979077	+	7.90907	NA	Intergenic	CpG	103464	NM_207032	1908	Hs.1408	NM_000114	HPRD:00570	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
19-PTNLD28-TUMOR_peak_82912	chr5	143303554	143303669	+	7.90907	NA	Intergenic	Intergenic	111885	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_50910	chr2	8260329	8260605	+	7.90907	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-143522	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
19-PTNLD28-TUMOR_peak_108722	chrX	71458619	71458735	+	7.90907	NA	intron (NM_017669, intron 1 of 1)	CpG	181	NM_017669	54821	Hs.47558	NM_017669	HPRD:10974	ERCC6L	PICH|RAD26L	excision repair cross-complementation group 6-like	protein-coding
19-PTNLD28-TUMOR_peak_42812	chr17	61483253	61483384	+	7.90907	NA	intron (NM_025185, intron 18 of 24)	intron (NM_025185, intron 18 of 24)	34889	NM_001017917	1534	Hs.355264	NM_001915	HPRD:02485	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
19-PTNLD28-TUMOR_peak_15679	chr10	114120698	114120880	+	7.90907	NA	Intergenic	Intergenic	-4436	NR_028134	390003	Hs.534691	NR_028134	ENSG00000243316	GUCY2GP	GUCY2G	guanylate cyclase 2G, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_25274	chr12	71511890	71512142	+	7.90907	NA	Intergenic	L1PA2|LINE|L1	39763	NM_004616	7103	Hs.170563	NM_004616	HPRD:02865	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
19-PTNLD28-TUMOR_peak_93799	chr7	87046159	87046262	+	7.90907	NA	intron (NM_018849, intron 21 of 27)	intron (NM_018849, intron 21 of 27)	58809	NM_000443	5244	Hs.654403	NM_000443	HPRD:01371	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_49664	chr19	48466549	48466722	+	7.90907	NA	Intergenic	Intergenic	7696	NR_024219	100170223	Hs.717052	NR_024219		SNAR-C5	-	small ILF3/NF90-associated RNA C5	snRNA
19-PTNLD28-TUMOR_peak_100655	chr8	126243449	126243594	+	7.90907	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	139438	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_44875	chr18	20633804	20634094	+	7.90907	NA	Intergenic	LTR50|LTR|ERVL	-80579	NM_001256438	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_72165	chr3	165602033	165602170	+	7.90907	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-46848	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_27374	chr13	21099929	21100317	+	7.90907	NA	promoter-TSS (NM_015974)	promoter-TSS (NM_015974)	-111	NM_015974	51084	Hs.370703	NM_015974	HPRD:16762	CRYL1	GDH|HEL30|lambda-CRY	crystallin, lambda 1	protein-coding
19-PTNLD28-TUMOR_peak_15273	chr10	102974589	102974721	+	7.90907	NA	Intergenic	Intergenic	14062	NM_006562	10660	Hs.37128	NM_006562		LBX1	HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_89053	chr6	109745735	109745892	+	7.90907	NA	intron (NR_104429, intron 5 of 8)	MER41A|LTR|ERV1	-16118	NM_003080	6610	Hs.55235	NM_003080	HPRD:04608	SMPD2	ISC1|NSMASE|NSMASE1	sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)	protein-coding
19-PTNLD28-TUMOR_peak_20492	chr11	87760891	87761005	+	7.90907	NA	Intergenic	L1PA3|LINE|L1	147687	NM_022337	23682	Hs.591975	NM_022337	HPRD:05889	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_14724	chr10	88149356	88149614	+	7.90907	NA	Intergenic	CpG	-23235	NM_017551	2894	Hs.530653	NM_017551	HPRD:17078	GRID1	GluD1	glutamate receptor, ionotropic, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_34616	chr15	76443422	76443688	+	7.90907	NA	intron (NM_152335, intron 3 of 10)	intron (NM_152335, intron 3 of 10)	30272	NR_120360	101929439	Hs.631721	NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
19-PTNLD28-TUMOR_peak_100467	chr8	123671434	123671551	+	7.90907	NA	Intergenic	Intergenic	-122409	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_74140	chr4	5981879	5981997	+	7.90907	NA	Intergenic	Intergenic	-56883	NR_039608	100616201		NR_039608	miRBase:MI0016749	MIR378D1	-	microRNA 378d-1	ncRNA
19-PTNLD28-TUMOR_peak_96128	chr7	145716118	145716224	+	7.90907	NA	Intergenic	L1PA2|LINE|L1	-97282	NM_014141	26047	Hs.655684	NM_014141	HPRD:05197	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_58290	chr2	217163561	217163726	+	7.90907	NA	intron (NM_020814, intron 1 of 3)	L1M5|LINE|L1	73107	NM_020814	57574	Hs.170388	NM_020814	HPRD:16299	MARCH4	MARCH-IV|RNF174	membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_14824	chr10	90967052	90967324	+	7.90907	NA	promoter-TSS (NM_003956)	promoter-TSS (NM_003956)	-117	NM_003956	9023	Hs.47357	NM_003956	HPRD:05183	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
19-PTNLD28-TUMOR_peak_16274	chr10	131301324	131301511	+	7.90907	NA	intron (NM_002412, intron 1 of 4)	intron (NM_002412, intron 1 of 4)	35963	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_54641	chr2	105489796	105490102	+	7.90907	NA	promoter-TSS (NR_110373)	promoter-TSS (NR_110373)	-896	NR_110373	102682016	Hs.638438	NR_110373		LINC01159	linc-Brn1b	long intergenic non-protein coding RNA 1159	ncRNA
19-PTNLD28-TUMOR_peak_71300	chr3	140467931	140468034	+	7.90907	NA	Intergenic	Intergenic	71116	NM_152616	287015	Hs.343487	NM_152616	HPRD:15559	TRIM42	PPP1R40	tripartite motif containing 42	protein-coding
19-PTNLD28-TUMOR_peak_102771	chr9	34375027	34375311	+	7.90802	NA	intron (NM_020702, intron 1 of 1)	intron (NM_020702, intron 1 of 1)	1725	NM_020702	57462	Hs.522083	NM_020702		KIAA1161	NET37	KIAA1161	protein-coding
19-PTNLD28-TUMOR_peak_99399	chr8	86574985	86575101	+	7.90742	NA	promoter-TSS (NR_003594).2	promoter-TSS (NR_003594).2	-301	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_97898	chr8	28206123	28206213	+	7.90706	NA	3' UTR (NM_018660, exon 10 of 10)	3' UTR (NM_018660, exon 10 of 10)	10003	NM_001284244	5368	Hs.88218	NM_006228	HPRD:03268	PNOC	PPNOC	prepronociceptin	protein-coding
19-PTNLD28-TUMOR_peak_100343	chr8	120220971	120221359	+	7.90705	NA	intron (NM_052886, intron 2 of 4)	CpG-25965	555	NM_052886	114569	Hs.201083	NM_052886	HPRD:14351	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_37851	chr16	53536551	53536674	+	7.90705	NA	intron (NM_022476, intron 1 of 9)	CpG	558	NM_001012398	64400	Hs.380897	NM_022476	HPRD:07467	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_14285	chr10	74035896	74036075	+	7.90639	NA	TTS (NM_019058)	TTS (NM_019058)	2308	NM_019058	54541	Hs.744875	NM_019058	HPRD:09662	DDIT4	Dig2|REDD-1|REDD1	DNA-damage-inducible transcript 4	protein-coding
19-PTNLD28-TUMOR_peak_86817	chr6	33257716	33257877	+	7.90571	NA	promoter-TSS (NM_001164267).3	promoter-TSS (NM_001164267).3	-226	NR_106892	102465501		NR_106892		MIR6834	hsa-mir-6834	microRNA 6834	ncRNA
19-PTNLD28-TUMOR_peak_102768	chr9	34272267	34272510	+	7.90571	NA	intron (NM_194313, intron 6 of 12)	intron (NM_194313, intron 6 of 12)	56810	NM_194313	347240	Hs.710246	NM_194313	HPRD:12963	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
19-PTNLD28-TUMOR_peak_74935	chr4	37687502	37687636	+	7.90252	NA	intron (NM_001085400, intron 1 of 6)	CpG	430	NM_001085399	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT-like 1	protein-coding
19-PTNLD28-TUMOR_peak_46836	chr19	5046758	5046941	+	7.90252	NA	intron (NM_015015, intron 5 of 22)	intron (NM_015015, intron 5 of 22)	77725	NM_015015	23030	Hs.654816	NM_015015	HPRD:11056	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
19-PTNLD28-TUMOR_peak_90862	chr7	1731839	1732035	+	7.90252	NA	Intergenic	Intergenic	-16861	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine-rich repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71408	chr3	142443632	142443963	+	7.90252	NA	intron (NM_001251845, intron 1 of 12)	CpG	531	NM_001251845	7220	Hs.250687	NM_003304	HPRD:11894	TRPC1	HTRP-1|TRP1	transient receptor potential cation channel, subfamily C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_70830	chr3	131259086	131259195	+	7.90252	NA	intron (NM_001289112, intron 15 of 15)	intron (NM_001289112, intron 15 of 15)	-37280	NM_007208	11222	Hs.205163	NM_007208	HPRD:06175	MRPL3	COXPD9|MRL3|RPML3	mitochondrial ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_48133	chr19	19217008	19217110	+	7.90252	NA	intron (NM_178526, intron 5 of 7)	intron (NM_178526, intron 5 of 7)	32251	NM_001256766	54929	Hs.631629	NM_017814	HPRD:07905	TMEM161A	AROS-29	transmembrane protein 161A	protein-coding
19-PTNLD28-TUMOR_peak_19266	chr11	65220709	65220851	+	7.89942	NA	Intergenic	MIR|SINE|MIR	8851	NR_030343	693197		NR_030343	miRBase:MI0003625	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
19-PTNLD28-TUMOR_peak_73407	chr3	194412200	194412371	+	7.89942	NA	Intergenic	Intergenic	5663	NM_153690	131583	Hs.435080	NM_153690	HPRD:13308	FAM43A	-	family with sequence similarity 43, member A	protein-coding
19-PTNLD28-TUMOR_peak_31125	chr14	71132247	71132408	+	7.89942	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	23823	NM_015351	23508	Hs.79170	NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
19-PTNLD28-TUMOR_peak_98250	chr8	38256302	38256402	+	7.89881	NA	intron (NM_001286819, intron 4 of 10)	AluSx|SINE|Alu	11703	NM_001199660	137994	Hs.696457	NM_144652	HPRD:08060	LETM2	-	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_96511	chr7	153020141	153020387	+	7.89881	NA	Intergenic	Intergenic	89055	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_33223	chr15	41187158	41187396	+	7.89881	NA	intron (NM_020857, intron 1 of 4)	intron (NM_020857, intron 1 of 4)	649	NM_020857	57617	Hs.23876	NM_020857	HPRD:09776	VPS18	PEP3	vacuolar protein sorting 18 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_36716	chr16	21059719	21059984	+	7.89499	NA	intron (NM_017539, intron 31 of 61)	L1PA2|LINE|L1	-110061	NM_020422	57146	Hs.258212	NM_020422	HPRD:17428	TMEM159	PROMETHIN	transmembrane protein 159	protein-coding
19-PTNLD28-TUMOR_peak_14605	chr10	82010295	82010383	+	7.89499	NA	Intergenic	Intergenic	39095	NM_000429	4143	Hs.282670	NM_000429	HPRD:02013	MAT1A	MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_14577	chr10	81269460	81269548	+	7.89499	NA	Intergenic	Intergenic	-2853	NM_001099692	143244	Hs.104825	NM_001099692	ENSG00000253626	EIF5AL1	EIF5AP1|bA342M3.3	eukaryotic translation initiation factor 5A-like 1	protein-coding
19-PTNLD28-TUMOR_peak_51471	chr2	20732892	20733129	+	7.89499	NA	Intergenic	Intergenic	59298	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_73645	chr3	197108401	197108574	+	7.89499	NA	Intergenic	Intergenic	-82344	NM_001290983	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_92657	chr7	55573911	55574025	+	7.89499	NA	intron (NM_001284284, intron 2 of 4)	intron (NM_001284284, intron 2 of 4)	31441	NM_001284284	81552	Hs.488307	NM_030796	HPRD:08526	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
19-PTNLD28-TUMOR_peak_31213	chr14	73704011	73704278	+	7.89499	NA	promoter-TSS (NM_173462)	promoter-TSS (NM_173462)	-61	NM_173462	89932	Hs.509909	NM_173462	HPRD:15099	PAPLN	-	papilin, proteoglycan-like sulfated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_22394	chr12	835691	835890	+	7.89499	NA	Intergenic	Intergenic	-26299	NM_001184985	65125	Hs.744906	NM_014823	HPRD:05570	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_94716	chr7	106009883	106010116	+	7.89499	NA	Intergenic	Intergenic	-84361	NM_005746	10135	Hs.489615	NM_005746	HPRD:09938	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_26476	chr12	116946176	116946567	+	7.89499	NA	Intergenic	CpG	-24856	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
19-PTNLD28-TUMOR_peak_10562	chr1	227625449	227625646	+	7.89499	NA	Intergenic	Intergenic	-119721	NM_003607	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_25034	chr12	65948596	65948694	+	7.89499	NA	intron (NR_120433, intron 3 of 4)	L1PA3|LINE|L1	87507	NR_120433	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_99494	chr8	92330943	92331038	+	7.89499	NA	intron (NM_052832, intron 5 of 18)	intron (NM_052832, intron 5 of 18)	69474	NM_052832	115111	Hs.354013	NM_052832	HPRD:10533	SLC26A7	SUT2	solute carrier family 26 (anion exchanger), member 7	protein-coding
19-PTNLD28-TUMOR_peak_70624	chr3	128223894	128224141	+	7.89499	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-2661	NR_026954	90246	Hs.635164	NR_026954		LOC90246	-	uncharacterized LOC90246	ncRNA
19-PTNLD28-TUMOR_peak_13886	chr10	64824396	64824752	+	7.89499	NA	Intergenic	Intergenic	-68433	NM_001282405	29982	Hs.449628	NM_030759	HPRD:11401	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_108188	chrX	47479183	47479522	+	7.89499	NA	promoter-TSS (NM_133499)	promoter-TSS (NM_133499)	-96	NM_006950	6853	Hs.225936	NM_006950	HPRD:02433	SYN1	SYN1a|SYN1b|SYNI	synapsin I	protein-coding
19-PTNLD28-TUMOR_peak_91188	chr7	6655676	6656070	+	7.89499	NA	intron (NM_017560, intron 1 of 2)	intron (NM_017560, intron 1 of 2)	346	NM_017560	54753	Hs.592170	NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
19-PTNLD28-TUMOR_peak_18288	chr11	44961988	44962214	+	7.89446	NA	5' UTR (NM_001258320, exon 3 of 10)	5' UTR (NM_001258320, exon 3 of 10)	9658	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_96369	chr7	150974229	150974381	+	7.89446	NA	promoter-TSS (NM_003078)	promoter-TSS (NM_003078)	-74	NM_003078	6604	Hs.647067	NM_003078	HPRD:03440	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
19-PTNLD28-TUMOR_peak_43369	chr17	73030504	73031043	+	7.89446	NA	intron (NR_110835, intron 2 of 7)	CpG	2111	NR_110835	23510	Hs.514468	NM_015353	HPRD:17176	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_87171	chr6	37072426	37072565	+	7.89358	NA	Intergenic	Intergenic	-65427	NM_002648	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_104741	chr9	97685061	97685251	+	7.89284	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	112912	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_100386	chr8	121048640	121048839	+	7.89001	NA	intron (NM_001283012, intron 6 of 6)	intron (NM_001283012, intron 6 of 6)	-88608	NM_021110	7373	Hs.409662	NM_021110	HPRD:00379	COL14A1	UND	collagen, type XIV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_98794	chr8	55082017	55082183	+	7.89001	NA	Intergenic	Intergenic	34319	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_67566	chr3	38159645	38159740	+	7.89001	NA	intron (NM_007337, intron 33 of 35)	intron (NM_007337, intron 33 of 35)	19041	NR_024024	30	Hs.643487	NM_001607	HPRD:06815	ACAA1	ACAA|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_19507	chr11	67329873	67329999	+	7.89001	NA	Intergenic	LTR23-int|LTR|ERV1	-21130	NM_000852	2950	Hs.523836	NM_000852	HPRD:00614	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
19-PTNLD28-TUMOR_peak_74769	chr4	24263791	24263880	+	7.89001	NA	Intergenic	Intergenic	258078	NR_030299	693158		NR_030299	miRBase:MI0003580	MIR573	MIRN573|hsa-mir-573	microRNA 573	ncRNA
19-PTNLD28-TUMOR_peak_85081	chr6	6614652	6614794	+	7.89001	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	8336	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_93652	chr7	80378136	80378228	+	7.89001	NA	intron (NM_006379, intron 17 of 17)	intron (NM_006379, intron 17 of 17)	102213	NM_001289908	948	Hs.120949	NM_000072	HPRD:01430	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_76778	chr4	119890569	119890675	+	7.89001	NA	intron (NM_001128934, intron 1 of 4)	intron (NM_001128934, intron 1 of 4)	80626	NM_001128933	171024	Hs.655519	NM_133477	HPRD:15456	SYNPO2	-	synaptopodin 2	protein-coding
19-PTNLD28-TUMOR_peak_59392	chr20	524656	524812	+	7.89001	NA	promoter-TSS (NM_177560)	promoter-TSS (NM_177560)	-252	NM_001895	1457	Hs.644056	NM_001895		CSNK2A1	CK2A1|CKII|CSNK2A3	casein kinase 2, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_8816	chr1	184163518	184163633	+	7.89001	NA	Intergenic	LTR82B|LTR|ERVL	142790	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_4252	chr1	68385092	68385208	+	7.89001	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	-85995	NM_018841	55970	Hs.431101	NM_018841	HPRD:13592	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
19-PTNLD28-TUMOR_peak_104671	chr9	96772938	96773098	+	7.89001	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-20058	NM_177995	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_9544	chr1	204534880	204535189	+	7.89001	NA	Intergenic	Intergenic	49527	NM_001278517	4194	Hs.497492	NM_002393	HPRD:04082	MDM4	HDMX|MDMX|MRP1	MDM4, p53 regulator	protein-coding
19-PTNLD28-TUMOR_peak_73575	chr3	196229710	196229827	+	7.88980	NA	exon (NM_152617, exon 1 of 6)	exon (NM_152617, exon 1 of 6)	871	NM_152617	165918	Hs.250648	NM_152617	HPRD:08190	RNF168	hRNF168	ring finger protein 168, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_64167	chr22	16404496	16404782	+	7.88708	NA	Intergenic	CpG	45165	NM_001005239	81061	Hs.554706	NM_001005239		OR11H1	OR22-1	olfactory receptor, family 11, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_47948	chr19	17873453	17873541	+	7.88708	NA	intron (NM_015122, intron 4 of 28)	intron (NM_015122, intron 4 of 28)	11211	NM_001161359	23149	Hs.96485	NM_015122	HPRD:16887	FCHO1	-	FCH domain only 1	protein-coding
19-PTNLD28-TUMOR_peak_32224	chr14	103995353	103995461	+	7.88708	NA	promoter-TSS (NM_152307)	promoter-TSS (NM_152307)	-102	NM_152307	115708	Hs.525610	NM_152307	HPRD:08810	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_101724	chr8	145242497	145242604	+	7.88210	NA	intron (NM_001099281, intron 6 of 11)	intron (NM_001099281, intron 6 of 11)	39002	NM_001288814	727957	Hs.443139	NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat-like repeat family member 1	protein-coding
19-PTNLD28-TUMOR_peak_12706	chr10	30287370	30287461	+	7.88210	NA	Intergenic	Intergenic	61073	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_49526	chr19	47248925	47249172	+	7.88210	NA	promoter-TSS (NM_001039885)	promoter-TSS (NM_001039885)	-255	NM_001039885	79147	Hs.515493	NM_024301	HPRD:05962	FKRP	LGMD2I|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
19-PTNLD28-TUMOR_peak_9126	chr1	200379762	200379876	+	7.88210	NA	promoter-TSS (NM_012482)	promoter-TSS (NM_012482)	-633	NM_012482	23528	Hs.59757	NM_012482	HPRD:11702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
19-PTNLD28-TUMOR_peak_80781	chr5	75699726	75699903	+	7.88210	NA	intron (NM_006633, intron 1 of 35)	CpG	734	NM_006633	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_89930	chr6	149775609	149775973	+	7.88210	NA	intron (NM_207360, intron 4 of 5)	intron (NM_207360, intron 4 of 5)	30357	NM_207360	340152	Hs.632618	NM_207360		ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
19-PTNLD28-TUMOR_peak_18878	chr11	61355023	61355199	+	7.88210	NA	promoter-TSS (NR_110189)	promoter-TSS (NR_110189)	-855	NR_110189	101927495	Hs.553866	NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
19-PTNLD28-TUMOR_peak_106515	chr9	135057993	135058206	+	7.88210	NA	intron (NM_032536, intron 2 of 7)	intron (NM_032536, intron 2 of 7)	20765	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_73641	chr3	197093647	197093739	+	7.88210	NA	Intergenic	Intergenic	-67550	NM_001290983	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_96963	chr8	7252475	7252610	+	7.88210	NA	Intergenic	Intergenic	21812	NM_001205266	100289462	Hs.740237	NM_001205266	ENSG00000177257	DEFB4B	DEFB4P	defensin, beta 4B	protein-coding
19-PTNLD28-TUMOR_peak_55073	chr2	113959721	113959813	+	7.88201	NA	3' UTR (NM_012455, exon 17 of 17)	3' UTR (NM_012455, exon 17 of 17)	28207	NM_012455	23550	Hs.516306	NM_012455	HPRD:15191	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_8086	chr1	169085343	169085705	+	7.88171	NA	intron (NM_001677, intron 2 of 5)	intron (NM_001677, intron 2 of 5)	9577	NM_001677	481	Hs.291196	NM_001677	HPRD:01663	ATP1B1	ATP1B	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_29541	chr14	24457640	24457767	+	7.88171	NA	promoter-TSS (NM_198083)	promoter-TSS (NM_198083)	-324	NM_198083	317749	Hs.743442	NM_198083	HPRD:10880	DHRS4L2	SDR25C3	dehydrogenase/reductase (SDR family) member 4 like 2	protein-coding
19-PTNLD28-TUMOR_peak_43460	chr17	73675839	73676197	+	7.88171	NA	intron (NM_013260, intron 3 of 10)	intron (NM_013260, intron 3 of 10)	12619	NM_013260	29115	Hs.655088	NM_013260	HPRD:17094	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_49159	chr19	41814486	41814650	+	7.88171	NA	TTS (NM_144732)	TTS (NM_144732)	-1526	NM_052848	90324	Hs.437497	NM_052848	HPRD:14467	CCDC97	-	coiled-coil domain containing 97	protein-coding
19-PTNLD28-TUMOR_peak_6245	chr1	145023307	145023736	+	7.88171	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	16474	NM_001198832	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_64479	chr22	21056333	21056750	+	7.88076	NA	non-coding (NR_026815, exon 1 of 8)	non-coding (NR_026815, exon 1 of 8)	1139	NR_026815	84222	Hs.546454	NM_032262	HPRD:13197	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_90927	chr7	2563527	2564064	+	7.88076	NA	intron (NM_001040167, intron 1 of 7)	CpG	-2913	NR_039791	100616116		NR_039791		MIR4648	-	microRNA 4648	ncRNA
19-PTNLD28-TUMOR_peak_116	chr1	1173515	1173967	+	7.88040	NA	Intergenic	Intergenic	6112	NM_080605	126792	Hs.284284	NM_080605	HPRD:12509	B3GALT6	EDSP2|SEMDJL1|beta3GalT6	UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_26286	chr12	111020330	111020841	+	7.87267	NA	intron (NM_139283, intron 1 of 5)	CpG	479	NM_139283	160760	Hs.13854	NM_139283		PPTC7	TA-PP2C|TAPP2C	PTC7 protein phosphatase homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_20711	chr11	95771304	95771484	+	7.87267	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-114023	NM_016156	8898	Hs.181326	NM_016156	HPRD:04650	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_57792	chr2	201983365	201983496	+	7.87267	NA	5' UTR (NM_001127183, exon 1 of 10)	5' UTR (NM_001127183, exon 1 of 10)	161	NM_001127183	8837	Hs.390736	NM_003879	HPRD:04671	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD-like apoptosis regulator	protein-coding
19-PTNLD28-TUMOR_peak_95437	chr7	132262101	132262270	+	7.87267	NA	promoter-TSS (NM_020911)	promoter-TSS (NM_020911)	-862	NM_001105543	91584	Hs.511454	NM_020911	HPRD:10901	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
19-PTNLD28-TUMOR_peak_86578	chr6	31107475	31107684	+	7.87267	NA	promoter-TSS (NM_014069)	promoter-TSS (NM_014069)	-452	NM_014069	170680	Hs.146824	NM_014069	HPRD:17921	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_4650	chr1	86861464	86861613	+	7.87267	NA	intron (NM_001184766, intron 1 of 15)	intron (NM_001184766, intron 1 of 15)	487	NM_001007022	57489	Hs.149360	NM_020729	HPRD:11134	ODF2L	dJ977L11.1	outer dense fiber of sperm tails 2-like	protein-coding
19-PTNLD28-TUMOR_peak_71141	chr3	137800683	137800784	+	7.86890	NA	intron (NM_173543, intron 8 of 15)	intron (NM_173543, intron 8 of 15)	31589	NM_001170538	199221	Hs.351403	NM_173543	HPRD:08145	DZIP1L	DZIP2	DAZ interacting zinc finger protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_6367	chr1	146051112	146051206	+	7.86890	NA	non-coding (NR_046188, exon 11 of 25).2	non-coding (NR_046188, exon 11 of 25).2	15097	NM_001101663	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_6485	chr1	147592898	147592992	+	7.86890	NA	non-coding (NR_046188, exon 11 of 25)	non-coding (NR_046188, exon 11 of 25)	15147	NM_001101663	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_7580	chr1	160087873	160087986	+	7.86249	NA	intron (NM_000702, intron 1 of 22)	intron (NM_000702, intron 1 of 22)	2409	NM_000702	477	Hs.34114	NM_000702	HPRD:01665	ATP1A2	FHM2|MHP2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_65913	chr22	45665507	45665687	+	7.86249	NA	Intergenic	Intergenic	-15271	NM_001167574	7380	Hs.632787	NM_006953	HPRD:15625	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
19-PTNLD28-TUMOR_peak_82373	chr5	136102273	136102433	+	7.86249	NA	Intergenic	Intergenic	-401189	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_102	chr1	1063910	1064095	+	7.86249	NA	Intergenic	Intergenic	-8395	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
19-PTNLD28-TUMOR_peak_28779	chr13	98824472	98824748	+	7.86249	NA	intron (NM_001001715, intron 1 of 2)	intron (NM_001001715, intron 1 of 2)	4911	NM_178861	140432	Hs.296045	NM_178861	HPRD:15745	RNF113B	RNF161|ZNF183L1|bA10G5.1	ring finger protein 113B	protein-coding
19-PTNLD28-TUMOR_peak_11830	chr10	5708319	5708786	+	7.86249	NA	promoter-TSS (NM_024701)	promoter-TSS (NM_024701)	6	NR_037164	79754	Hs.445899	NM_024701	HPRD:10667	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
19-PTNLD28-TUMOR_peak_65869	chr22	44939790	44940000	+	7.86249	NA	Intergenic	Intergenic	-25325	NR_028411	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_109786	chrX	150674431	150674578	+	7.86249	NA	Intergenic	Intergenic	-57503	NM_173493	139135	Hs.160594	NM_173493	HPRD:06613	PASD1	CT63|OXTES1	PAS domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_87080	chr6	36308746	36308970	+	7.86249	NA	Intergenic	Intergenic	-4196	NM_001010903	389384	Hs.162104	NM_001010903	HPRD:16824	C6orf222	-	chromosome 6 open reading frame 222	protein-coding
19-PTNLD28-TUMOR_peak_109707	chrX	148577181	148577403	+	7.86249	NA	intron (NR_104128, intron 6 of 8)	intron (NR_104128, intron 6 of 8)	9592	NM_000202	3423	Hs.460960	NM_000202	HPRD:02402	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_38294	chr16	67193750	67193949	+	7.86249	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	-37	NM_003789	8717	Hs.460996	NM_003789		TRADD	Hs.89862	TNFRSF1A-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_105703	chr9	119264275	119264405	+	7.86249	NA	intron (NM_198187, intron 4 of 8)	intron (NM_198187, intron 4 of 8)	-2222	NR_033973	100128505	Hs.675821	NR_033973	ENSG00000229105	ASTN2-AS1	-	ASTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36397	chr16	13887670	13887857	+	7.86249	NA	Intergenic	Intergenic	-126251	NM_005236	2072	Hs.567265	NM_005236	HPRD:00594	ERCC4	ERCC11|FANCQ|RAD1|XPF	excision repair cross-complementation group 4	protein-coding
19-PTNLD28-TUMOR_peak_22948	chr12	8601971	8602086	+	7.86249	NA	Intergenic	Harlequin-int|LTR|ERV1	-6563	NM_001007033	93978	Hs.591147	NM_001007033	HPRD:16722	CLEC6A	CLEC4N|CLECSF10	C-type lectin domain family 6, member A	protein-coding
19-PTNLD28-TUMOR_peak_93182	chr7	73016093	73016223	+	7.86249	NA	intron (NM_032951, intron 7 of 16)	AluSz6|SINE|Alu	22712	NM_032953	51085	Hs.647055	NM_032951	HPRD:12033	MLXIPL	CHREBP|MIO|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein-like	protein-coding
19-PTNLD28-TUMOR_peak_46989	chr19	7717107	7717256	+	7.86249	NA	Intergenic	Intergenic	15194	NM_001127396	6813	Hs.515104	NM_006949	HPRD:03423	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23828	chr12	42524563	42524741	+	7.86249	NA	intron (NM_173601, intron 1 of 7)	AluJr|SINE|Alu	14021	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_84807	chr6	2731602	2732004	+	7.86249	NA	intron (NM_001012418, intron 2 of 12)	L2b|LINE|L2	19351	NM_001012418	340156	Hs.127830	NM_001012418	HPRD:17355	MYLK4	SgK085	myosin light chain kinase family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_17561	chr11	19333020	19333114	+	7.86249	NA	Intergenic	Intergenic	-39204	NM_001111018	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_51527	chr2	23503449	23503640	+	7.86249	NA	Intergenic	Intergenic	-104754	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_73256	chr3	192140544	192140645	+	7.86249	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	-13756	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_38087	chr16	57875963	57876366	+	7.86249	NA	Intergenic	L2a|LINE|L2	31615	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_28302	chr13	52573729	52574069	+	7.86249	NA	intron (NM_001243182, intron 1 of 21)	L2a|LINE|L2	11731	NM_001243182	540	Hs.492280	NM_000053	HPRD:06050	ATP7B	PWD|WC1|WD|WND	ATPase, Cu++ transporting, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_48992	chr19	39749060	39749573	+	7.86249	NA	Intergenic	LTR13A|LTR|ERVK	-9820	NR_074079	101180976	Hs.745579	NM_001276254		IFNL4	IFNAN	interferon, lambda 4 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_91380	chr7	16955906	16956006	+	7.86249	NA	Intergenic	LTR78|LTR|ERV1	-34343	NM_176813	155465	Hs.100686	NM_176813	HPRD:16545	AGR3	AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3	protein-coding
19-PTNLD28-TUMOR_peak_51211	chr2	12746481	12746763	+	7.86249	NA	Intergenic	Intergenic	-110376	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_54408	chr2	99082840	99082951	+	7.86249	NA	intron (NM_001134225, intron 1 of 24)	intron (NM_001134225, intron 1 of 24)	21574	NM_001134224	3631	Hs.469386	NM_001566	HPRD:02949	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase, type I, 107kDa	protein-coding
19-PTNLD28-TUMOR_peak_39619	chr17	1391522	1391831	+	7.86179	NA	intron (NM_001080779, intron 1 of 31)	CpG	-2625	NM_001080950	4641	Hs.286226	NM_033375	HPRD:09411	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
19-PTNLD28-TUMOR_peak_83474	chr5	156943735	156943841	+	7.86140	NA	intron (NM_033274, intron 7 of 22)	intron (NM_033274, intron 7 of 22)	56761	NM_001099287	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_10867	chr1	232278906	232279010	+	7.85787	NA	Intergenic	Intergenic	-324695	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_77574	chr4	152021190	152021402	+	7.85787	NA	intron (NM_001267699, intron 1 of 2)	intron (NM_001267699, intron 1 of 2)	571	NM_001267699	6189	Hs.356572	NM_001006	HPRD:01606	RPS3A	FTE1|MFTL|S3A	ribosomal protein S3A	protein-coding
19-PTNLD28-TUMOR_peak_105465	chr9	115141035	115141168	+	7.85787	NA	Intergenic	MER102a|DNA|hAT-Charlie	-1088	NM_001195822	84263	Hs.59486	NM_032303	HPRD:13679	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
19-PTNLD28-TUMOR_peak_60731	chr20	34251713	34251819	+	7.85746	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	1093	NR_037188	8904	Hs.246413	NM_003915	HPRD:05014	CPNE1	COPN1|CPN1	copine I	protein-coding
19-PTNLD28-TUMOR_peak_80615	chr5	72576791	72576982	+	7.85746	NA	Intergenic	Intergenic	107863	NM_153217	134288	Hs.508588	NM_153217	HPRD:14432	TMEM174	-	transmembrane protein 174	protein-coding
19-PTNLD28-TUMOR_peak_64395	chr22	19973955	19974318	+	7.85746	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	22860	NR_039918	100616414		NR_039918		MIR4761	-	microRNA 4761	ncRNA
19-PTNLD28-TUMOR_peak_13	chr1	236473	236772	+	7.85746	NA	Intergenic	Intergenic	-87270	NR_028325	100132062	Hs.722350	NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
19-PTNLD28-TUMOR_peak_46818	chr19	4809737	4809894	+	7.85523	NA	Intergenic	Intergenic	18087	NM_018708	55527	Hs.515082	NM_018708	HPRD:16888	FEM1A	EPRAP	fem-1 homolog a (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_14788	chr10	89605158	89605284	+	7.85523	NA	non-coding (NR_028492, exon 4 of 4)	non-coding (NR_028492, exon 4 of 4)	17973	NM_001126049	100144748	Hs.559820	NM_001126049	ENSG00000227268	KLLN	CWS4|KILLIN	killin, p53-regulated DNA replication inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_69148	chr3	75653860	75654010	+	7.85523	NA	Intergenic	HERVE-int|LTR|ERV1	-25979	NR_031714	100302212		NR_031714	miRBase:MI0006657	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
19-PTNLD28-TUMOR_peak_106707	chr9	138817497	138817696	+	7.85523	NA	Intergenic	Intergenic	-18591	NM_015447	157922	Hs.522493	NM_015447	HPRD:13001	CAMSAP1	PRO2405|bA100C15.1	calmodulin regulated spectrin-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_5499	chr1	111158509	111158600	+	7.85523	NA	intron (NM_001204269, intron 1 of 4)	intron (NM_001204269, intron 1 of 4)	-9579	NM_004974	3737	Hs.248139	NM_004974	HPRD:01443	KCNA2	HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_43857	chr17	78002001	78002198	+	7.85523	NA	intron (NM_019020, intron 1 of 11)	AluSx|SINE|Alu	7558	NM_019020	125058	Hs.369819	NM_019020	HPRD:10261	TBC1D16	-	TBC1 domain family, member 16	protein-coding
19-PTNLD28-TUMOR_peak_38499	chr16	69601024	69601266	+	7.85523	NA	intron (NM_173214, intron 1 of 14)	intron (NM_173214, intron 1 of 14)	1276	NM_173215	10725	Hs.371987	NM_006599	HPRD:05272	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T-cells 5, tonicity-responsive	protein-coding
19-PTNLD28-TUMOR_peak_57625	chr2	197376471	197376752	+	7.85523	NA	intron (NM_020760, intron 1 of 28)	intron (NM_020760, intron 1 of 28)	80724	NM_020760	57520	Hs.654742	NM_020760	HPRD:17099	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_84743	chr6	1641733	1641863	+	7.85523	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	31117	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_78060	chr4	174090510	174091208	+	7.85523	NA	intron (NM_017423, intron 1 of 11)	CpG	955	NM_017423	51809	Hs.548088	NM_017423	HPRD:10386	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_6027	chr1	120784570	120784658	+	7.85523	NA	Intergenic	AluJo|SINE|Alu	-54391	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_103023	chr9	37964498	37964670	+	7.85523	NA	intron (NM_003028, intron 3 of 5)	MIR3|SINE|MIR	-60234	NR_024873	92014	Hs.634120	NM_033412	HPRD:14370	SLC25A51	CG7943|MCART1	solute carrier family 25, member 51	protein-coding
19-PTNLD28-TUMOR_peak_42969	chr17	63491510	63491605	+	7.85490	NA	Intergenic	Intergenic	66183	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_36501	chr16	15601142	15601536	+	7.85490	NA	intron (NM_001142469, intron 1 of 5)	intron (NM_001142469, intron 1 of 5)	5216	NM_001142469	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_88560	chr6	84418554	84418898	+	7.85490	NA	promoter-TSS (NM_001256718)	promoter-TSS (NM_001256718)	121	NM_001242792	9892	Hs.368046	NM_014841	HPRD:06391	SNAP91	AP180|CALM	synaptosomal-associated protein, 91kDa	protein-coding
19-PTNLD28-TUMOR_peak_106716	chr9	138971288	138971450	+	7.85490	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	15762	NM_144653	138151	Hs.112895	NM_144653	HPRD:09831	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2, BEN and BTB (POZ) domain containing	protein-coding
19-PTNLD28-TUMOR_peak_17145	chr11	11250134	11250279	+	7.85490	NA	Intergenic	LTR16E1|LTR|ERVL	124698	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_46526	chr19	940919	941030	+	7.85490	NA	intron (NM_005224, intron 3 of 8)	CpG	14937	NM_005224	1820	Hs.501296	NM_005224		ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding
19-PTNLD28-TUMOR_peak_3862	chr1	59893020	59893156	+	7.85490	NA	intron (NM_001113411, intron 5 of 16)	intron (NM_001113411, intron 5 of 16)	-88213	NM_001278224	55277	Hs.444301	NM_018291	HPRD:07721	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_106316	chr9	131684474	131684670	+	7.85490	NA	promoter-TSS (NM_001100877)	promoter-TSS (NM_001100877)	10	NM_001100877	254295	Hs.709447	NM_174933	HPRD:17850	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94049	chr7	95705278	95705401	+	7.85490	NA	intron (NM_001278421, intron 13 of 15)	intron (NM_001278421, intron 13 of 15)	143729	NR_030322	693176		NR_030322		MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
19-PTNLD28-TUMOR_peak_35814	chr16	2540828	2541009	+	7.85490	NA	intron (NM_020705, intron 1 of 6)	intron (NM_020705, intron 1 of 6)	15771	NM_020705	57465	Hs.353087	NM_020705	ENSG00000162065	TBC1D24	DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6	TBC1 domain family, member 24	protein-coding
19-PTNLD28-TUMOR_peak_53633	chr2	76061276	76061582	+	7.85490	NA	Intergenic	L1PA7|LINE|L1	-123318	NM_001201335	6936	Hs.303808	NM_003203	HPRD:01791	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_102966	chr9	36988120	36988208	+	7.85490	NA	intron (NM_001280553, intron 4 of 7)	intron (NM_001280553, intron 4 of 7)	46312	NM_001280548	5079	Hs.654464	NM_016734	HPRD:01334	PAX5	ALL3|BSAP	paired box 5	protein-coding
19-PTNLD28-TUMOR_peak_95466	chr7	133579640	133579771	+	7.85490	NA	intron (NM_021807, intron 11 of 17)	L1PA2|LINE|L1	-70064	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
19-PTNLD28-TUMOR_peak_104434	chr9	91422342	91422616	+	7.85490	NA	Intergenic	Intergenic	-61659	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_12714	chr10	30357416	30357703	+	7.85490	NA	Intergenic	Intergenic	-9071	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_14941	chr10	94831778	94831889	+	7.85490	NA	Intergenic	CpG	-1399	NM_057157	1592	Hs.150595	NM_000783	HPRD:03759	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450, family 26, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_17152	chr11	11284949	11285125	+	7.85482	NA	Intergenic	Intergenic	89867	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_33479	chr15	48010522	48010626	+	7.85482	NA	promoter-TSS (NM_153616)	promoter-TSS (NM_153616)	-112	NM_153617	80031	Hs.511265	NM_020858	HPRD:10221	SEMA6D	-	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
19-PTNLD28-TUMOR_peak_12863	chr10	33624848	33625304	+	7.85482	NA	Intergenic	CpG-2701	-1243	NM_001244973	8829	Hs.131704	NM_003873	HPRD:03642	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
19-PTNLD28-TUMOR_peak_56024	chr2	139113771	139114062	+	7.85482	NA	Intergenic	Intergenic	-145434	NM_001001664	339745	Hs.333297	NM_001001664	HPRD:11261	SPOPL	BTBD33	speckle-type POZ protein-like	protein-coding
19-PTNLD28-TUMOR_peak_30493	chr14	57134302	57134724	+	7.85482	NA	Intergenic	L1PA2|LINE|L1	88002	NM_017799	54916	Hs.497253	NM_017799	HPRD:12624	TMEM260	C14orf101	transmembrane protein 260	protein-coding
19-PTNLD28-TUMOR_peak_54183	chr2	95648608	95648722	+	7.85482	NA	Intergenic	Intergenic	-35578	NR_037597	442028	Hs.611545	NR_037597	ENSG00000259848	LOC442028	-	uncharacterized LOC442028	ncRNA
19-PTNLD28-TUMOR_peak_32301	chr14	105292870	105292973	+	7.85482	NA	Intergenic	C-rich|Low_complexity|Low_complexity	5383	NR_024396	196872	Hs.352220	NR_024396	ENSG00000258701	LINC00638	-	long intergenic non-protein coding RNA 638	ncRNA
19-PTNLD28-TUMOR_peak_43589	chr17	74723208	74723311	+	7.85482	NA	promoter-TSS (NM_001081461)	promoter-TSS (NM_001081461)	347	NM_001206987	124512	Hs.74655	NM_001080510	ENSG00000181038	METTL23	C17orf95	methyltransferase like 23	protein-coding
19-PTNLD28-TUMOR_peak_18225	chr11	44051978	44052121	+	7.85482	NA	Intergenic	Intergenic	-17482	NM_001031854	390110	Hs.558851	NM_001031854	ENSG00000205126	ACCSL	-	1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like	protein-coding
19-PTNLD28-TUMOR_peak_84977	chr6	4357970	4358097	+	7.85482	NA	Intergenic	Intergenic	221727	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_41881	chr17	44431411	44431510	+	7.85482	NA	intron (NM_016632, intron 2 of 4).3	L2|LINE|L2	7674	NM_001039083	100506084	Hs.559259	NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP-ribosylation factor-like 17B	protein-coding
19-PTNLD28-TUMOR_peak_56620	chr2	161238042	161238153	+	7.85377	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	26296	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	ncRNA
19-PTNLD28-TUMOR_peak_17301	chr11	13229137	13229671	+	7.85377	NA	Intergenic	L2c|LINE|L2	-69870	NM_001030273	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_31039	chr14	69950964	69951162	+	7.85377	NA	promoter-TSS (NM_001161498)	promoter-TSS (NM_001161498)	-408	NM_001161498	400224	Hs.509796	NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding
19-PTNLD28-TUMOR_peak_38932	chr16	80966330	80966552	+	7.85377	NA	Intergenic	CpG	-73662	NM_001270474	55839	Hs.726537	NM_018455	HPRD:12528	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
19-PTNLD28-TUMOR_peak_11513	chr1	247275204	247275379	+	7.85377	NA	exon (NM_207401, exon 1 of 1)	exon (NM_207401, exon 1 of 1)	428	NM_207401	388759	Hs.456511	NM_207401	HPRD:13511	C1orf229	-	chromosome 1 open reading frame 229	protein-coding
19-PTNLD28-TUMOR_peak_11655	chr10	1507713	1507881	+	7.85377	NA	intron (NM_018702, intron 1 of 9)	LTR43|LTR|ERV1	-61028	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38931	chr16	80965914	80966202	+	7.85377	NA	Intergenic	CpG	-74045	NM_001270474	55839	Hs.726537	NM_018455	HPRD:12528	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
19-PTNLD28-TUMOR_peak_61702	chr20	48225523	48225649	+	7.84857	NA	Intergenic	MER96|DNA|hAT	-40879	NM_000961	5740	Hs.302085	NM_000961	HPRD:09046	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 (prostacyclin) synthase	protein-coding
19-PTNLD28-TUMOR_peak_61181	chr20	42086808	42087110	+	7.84857	NA	intron (NR_034009, intron 1 of 6)	CpG	455	NR_034009	6431	Hs.725336	NM_006275	HPRD:09054	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine/arginine-rich splicing factor 6	protein-coding
19-PTNLD28-TUMOR_peak_64917	chr22	27872825	27872949	+	7.84847	NA	Intergenic	Intergenic	324599	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_97	chr1	1004591	1004686	+	7.84825	NA	Intergenic	CpG	5049	NM_001205252	401934	Hs.568137	NM_001205252		RNF223	-	ring finger protein 223	protein-coding
19-PTNLD28-TUMOR_peak_18684	chr11	57667913	57668068	+	7.84692	NA	Intergenic	Intergenic	-123363	NM_001005212	219956	Hs.689841	NM_001005212	HPRD:17800	OR9Q1	-	olfactory receptor, family 9, subfamily Q, member 1	protein-coding
19-PTNLD28-TUMOR_peak_25816	chr12	101416023	101416154	+	7.84692	NA	intron (NM_001286616, intron 8 of 26)	intron (NM_001286616, intron 8 of 26)	120664	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_50527	chr19	58316005	58316304	+	7.84692	NA	Intergenic	LTR10C|LTR|ERV1	10127	NM_024762	79818	Hs.560727	NM_024762	HPRD:15835	ZNF552	-	zinc finger protein 552	protein-coding
19-PTNLD28-TUMOR_peak_54602	chr2	102804410	102804559	+	7.84692	NA	intron (NM_003854, intron 2 of 11)	CpG-15319	1051	NM_003854	8808	Hs.659863	NM_003854	HPRD:05150	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_56830	chr2	169103045	169103200	+	7.84692	NA	intron (NM_013233, intron 1 of 17)	CpG	983	NM_013233	27347	Hs.276271	NM_013233	HPRD:09627	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
19-PTNLD28-TUMOR_peak_33355	chr15	44091106	44091280	+	7.84692	NA	exon (NM_001258031, exon 3 of 12)	exon (NM_001258031, exon 3 of 12)	1102	NM_001258032	619189	Hs.604985	NM_001258031	ENSG00000184716	SERINC4	-	serine incorporator 4	protein-coding
19-PTNLD28-TUMOR_peak_88550	chr6	83903689	83903886	+	7.84692	NA	promoter-TSS (NM_001199919)	promoter-TSS (NM_001199919)	-132	NM_001199917	5238	Hs.661665	NM_015599	HPRD:01390	PGM3	AGM1|IMD23|PAGM|PGM 3	phosphoglucomutase 3	protein-coding
19-PTNLD28-TUMOR_peak_86819	chr6	33266609	33266957	+	7.83648	NA	TTS (NM_003190).3	TTS (NM_003190).3	382	NM_001243738	5863	Hs.509622	NM_004761	HPRD:03810	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator-like 2	protein-coding
19-PTNLD28-TUMOR_peak_35614	chr16	447791	447939	+	7.83589	NA	5' UTR (NM_001286440, exon 1 of 5)	5' UTR (NM_001286440, exon 1 of 5)	123	NM_001286440	4833	Hs.9235	NM_005009	HPRD:03489	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_70926	chr3	133297453	133297657	+	7.83589	NA	intron (NM_001282762, intron 2 of 4)	intron (NM_001282762, intron 2 of 4)	4277	NM_001282765	55573	Hs.518265	NM_017548	HPRD:13627	CDV3	H41	CDV3 homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_46217	chr18	68088855	68088991	+	7.83364	NA	Intergenic	Intergenic	-37096	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_53290	chr2	69536458	69536699	+	7.83364	NA	Intergenic	Intergenic	77808	NM_001244710	2673	Hs.580300	NM_002056	HPRD:00702	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
19-PTNLD28-TUMOR_peak_97384	chr8	18812406	18812557	+	7.83364	NA	intron (NM_015310, intron 1 of 15)	intron (NM_015310, intron 1 of 15)	58715	NM_015310	23362	Hs.434255	NM_015310	HPRD:11462	PSD3	EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_24302	chr12	52469198	52469391	+	7.83364	NA	intron (NM_001098673, intron 3 of 3)	MIR|SINE|MIR	-4186	NR_120437	26628	Hs.524431	NR_120437		OR7E47P	OR7E141	olfactory receptor, family 7, subfamily E, member 47 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46250	chr18	72163001	72163148	+	7.82927	NA	promoter-TSS (NM_018235)	promoter-TSS (NM_018235)	-426	NM_018235	55748	Hs.149185	NM_018235	HPRD:09893	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding
19-PTNLD28-TUMOR_peak_29094	chr13	111526976	111527183	+	7.82763	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-4424	NR_027701	283487	Hs.245390	NM_178514		LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	ncRNA
19-PTNLD28-TUMOR_peak_60655	chr20	33170403	33170556	+	7.82763	NA	intron (NM_080476, intron 9 of 11)	AluJb|SINE|Alu	23978	NM_032514	84557	Hs.632273	NM_032514	HPRD:03144	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_85812	chr6	19838788	19839013	+	7.82600	NA	intron (NM_001546, intron 2 of 2)	CpG-21756	1299	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_42690	chr17	58108264	58108448	+	7.82480	NA	Intergenic	MER103C|DNA|hAT-Charlie	-12020	NR_002924	653645	Hs.600085	NR_002924		TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough transcribed pseudogene	pseudo
19-PTNLD28-TUMOR_peak_93141	chr7	72562708	72562923	+	7.82480	NA	Intergenic	LTR32|LTR|ERVL	-6197	NR_003580	100093631	Hs.488624	NR_003580		LOC100093631	-	general transcription factor II, i, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7337	chr1	156609691	156609836	+	7.82480	NA	Intergenic	Intergenic	-1977	NM_021948	63827	Hs.516904	NM_021948	HPRD:02644	BCAN	BEHAB|CSPG7	brevican	protein-coding
19-PTNLD28-TUMOR_peak_38936	chr16	80982913	80983059	+	7.82480	NA	Intergenic	MER20B|DNA|hAT-Charlie	-57117	NM_001270474	55839	Hs.726537	NM_018455	HPRD:12528	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
19-PTNLD28-TUMOR_peak_19724	chr11	70049979	70050209	+	7.82480	NA	intron (NM_003824, intron 1 of 1)	intron (NM_003824, intron 1 of 1)	825	NM_003824	8772	Hs.86131	NM_003824	HPRD:03909	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_63376	chr21	36991579	36991798	+	7.82375	NA	Intergenic	L2c|LINE|L2	-38626	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
19-PTNLD28-TUMOR_peak_18382	chr11	46143437	46143572	+	7.82375	NA	promoter-TSS (NM_016621)	promoter-TSS (NM_016621)	-519	NM_016621	51317	Hs.502458	NM_016621	ENSG00000135365	PHF21A	BHC80	PHD finger protein 21A	protein-coding
19-PTNLD28-TUMOR_peak_89682	chr6	139308630	139309174	+	7.82375	NA	5' UTR (NM_001128617, exon 1 of 19)	5' UTR (NM_001128617, exon 1 of 19)	496	NM_001286611	85021	Hs.334603	NM_031922	HPRD:09687	REPS1	RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_28155	chr13	47128140	47128472	+	7.82375	NA	intron (NM_001164211, intron 1 of 19)	CpG	1010	NM_015116	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74793	chr4	25236141	25236346	+	7.82375	NA	intron (NM_018323, intron 1 of 9)	CpG	590	NM_018323	55300	Hs.191701	NM_018323	HPRD:15132	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_85085	chr6	6662517	6662627	+	7.82375	NA	Intergenic	Intergenic	-39513	NR_026970	285780	Hs.655737	NM_173675	HPRD:08165	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96316	chr7	150660194	150660288	+	7.82375	NA	intron (NM_000238, intron 2 of 14)	intron (NM_000238, intron 2 of 14)	-7324	NM_172057	3757	Hs.647099	NM_000238	HPRD:01069	KCNH2	ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding
19-PTNLD28-TUMOR_peak_47972	chr19	17975149	17975308	+	7.82328	NA	Intergenic	Intergenic	1831	NR_000012	26780	Hs.684118	NR_000012		SNORA68	RNU68|U68	small nucleolar RNA, H/ACA box 68	snoRNA
19-PTNLD28-TUMOR_peak_108065	chrX	43411474	43411754	+	7.82273	NA	Intergenic	Intergenic	-102541	NM_000240	4128	Hs.183109	NM_000240		MAOA	MAO-A	monoamine oxidase A	protein-coding
19-PTNLD28-TUMOR_peak_30432	chr14	55627859	55627950	+	7.82273	NA	intron (NM_001146015, intron 13 of 19)	intron (NM_001146015, intron 13 of 19)	24203	NR_003225	3958	Hs.531081	NM_002306	HPRD:01090	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	lectin, galactoside-binding, soluble, 3	protein-coding
19-PTNLD28-TUMOR_peak_91501	chr7	20547751	20547885	+	7.82273	NA	Intergenic	LTR33A|LTR|ERVL	-107427	NM_001163941	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
19-PTNLD28-TUMOR_peak_69334	chr3	94647905	94648037	+	7.82273	NA	Intergenic	Intergenic	-9136	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
19-PTNLD28-TUMOR_peak_76469	chr4	105910645	105910827	+	7.82273	NA	Intergenic	LTR33B|LTR|ERVL	-156296	NM_017628	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_89523	chr6	134317762	134317918	+	7.82273	NA	intron (NM_145176, intron 4 of 4)	intron (NM_145176, intron 4 of 4)	43539	NM_004865	9519	Hs.486507	NM_004865		TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TBP-like 1	protein-coding
19-PTNLD28-TUMOR_peak_36818	chr16	23072133	23072276	+	7.82273	NA	TTS (NM_020718)	TTS (NM_020718)	88387	NM_020718	57478	Hs.183817	NM_020718	HPRD:15634	USP31	-	ubiquitin specific peptidase 31	protein-coding
19-PTNLD28-TUMOR_peak_35066	chr15	87154993	87155187	+	7.82273	NA	intron (NM_152336, intron 21 of 23)	L3|LINE|CR1	-294891	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_60853	chr20	35616934	35617058	+	7.82273	NA	Intergenic	LTR18A|LTR|ERVL	-36750	NM_015474	25939	Hs.580681	NM_015474	HPRD:08418	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88	SAM domain and HD domain 1	protein-coding
19-PTNLD28-TUMOR_peak_31317	chr14	75677899	75678106	+	7.82273	NA	Intergenic	Intergenic	-34653	NM_006827	10972	Hs.74137	NM_006827	HPRD:12013	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23	transmembrane emp24-like trafficking protein 10 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_69432	chr3	99766329	99766610	+	7.82273	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	-49410	NR_031662	100313938		NR_031662	miRBase:MI0006395	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
19-PTNLD28-TUMOR_peak_58154	chr2	210772608	210772769	+	7.82273	NA	intron (NM_182587, intron 28 of 62)	intron (NM_182587, intron 28 of 62)	-94601	NM_001278289	6120	Hs.282260	NM_006916		RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
19-PTNLD28-TUMOR_peak_26345	chr12	112153139	112153280	+	7.82273	NA	intron (NM_001136538, intron 7 of 21)	intron (NM_001136538, intron 7 of 21)	29352	NM_001136538	80724	Hs.331141	NM_025247	HPRD:10625	ACAD10	-	acyl-CoA dehydrogenase family, member 10	protein-coding
19-PTNLD28-TUMOR_peak_91262	chr7	8419104	8419194	+	7.82273	NA	Intergenic	Intergenic	-54436	NM_152745	30010	Hs.487564	NM_152745	HPRD:06867	NXPH1	NPH1	neurexophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_60360	chr20	29508378	29508595	+	7.82273	NA	Intergenic	Intergenic	-103393	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_42954	chr17	63328618	63328780	+	7.82273	NA	Intergenic	Intergenic	195243	NM_001081955	8787	Hs.664380	NM_003835	HPRD:04962	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
19-PTNLD28-TUMOR_peak_82378	chr5	136277724	136277812	+	7.82273	NA	Intergenic	L1PA4|LINE|L1	557250	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_89442	chr6	130088256	130088517	+	7.82273	NA	Intergenic	Intergenic	-57016	NM_033515	93663	Hs.486458	NM_033515	HPRD:12474	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
19-PTNLD28-TUMOR_peak_31830	chr14	94595816	94596140	+	7.82273	NA	promoter-TSS (NM_032036)	promoter-TSS (NM_032036)	-21	NM_032036	83982	Hs.94695	NM_032036	HPRD:13291	IFI27L2	FAM14A|ISG12B|TLH29	interferon, alpha-inducible protein 27-like 2	protein-coding
19-PTNLD28-TUMOR_peak_45720	chr18	47730399	47730536	+	7.82273	NA	Intergenic	Intergenic	-9016	NM_001080467	4645	Hs.720076	NM_001080467	ENSG00000167306	MYO5B	-	myosin VB	protein-coding
19-PTNLD28-TUMOR_peak_25776	chr12	99147946	99148144	+	7.82273	NA	intron (NM_181670, intron 11 of 12)	intron (NM_181670, intron 11 of 12)	108967	NM_001160	317	Hs.552567	NM_001160	HPRD:03755	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_21720	chr11	122103857	122103956	+	7.82273	NA	Intergenic	AluJb|SINE|Alu	-30136	NR_024430	399959	Hs.44098	NR_024430	ENSG00000255248	MIR100HG	AGD1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23596	chr12	30563009	30563171	+	7.82273	NA	Intergenic	AluSc8|SINE|Alu	267088	NM_001190995	10526	Hs.505136	NM_006390	HPRD:09282	IPO8	RANBP8	importin 8	protein-coding
19-PTNLD28-TUMOR_peak_29699	chr14	30943288	30943420	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-84975	NM_017769	55632	Hs.509008	NM_017769	HPRD:13851	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_97283	chr8	15767586	15767679	+	7.82273	NA	Intergenic	MIR|SINE|MIR	282668	NM_002445	4481	Hs.147635	NM_002445	HPRD:01092	MSR1	CD204|SCARA1|SR-A|SRA|phSR1|phSR2	macrophage scavenger receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_93723	chr7	83412079	83412264	+	7.82273	NA	Intergenic	Intergenic	-133692	NM_012431	9723	Hs.528721	NM_012431	HPRD:11545	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
19-PTNLD28-TUMOR_peak_57249	chr2	180550011	180550112	+	7.82273	NA	intron (NM_152520, intron 3 of 9)	intron (NM_152520, intron 3 of 9)	60708	NM_001113397	151126	Hs.655005	NM_152520	HPRD:15823	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
19-PTNLD28-TUMOR_peak_15893	chr10	120038331	120038456	+	7.82273	NA	Intergenic	Intergenic	63446	NM_001134672	63877	Hs.105575	NM_022063	HPRD:12593	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204, member A	protein-coding
19-PTNLD28-TUMOR_peak_106104	chr9	128991266	128991364	+	7.82273	NA	Intergenic	Intergenic	46879	NR_121584	101929116	Hs.382124	NR_121584	ENSG00000228392	LOC101929116	-	uncharacterized LOC101929116	ncRNA
19-PTNLD28-TUMOR_peak_81108	chr5	90236564	90236677	+	7.82273	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	373599	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20648	chr11	94609949	94610103	+	7.82273	NA	TTS (NM_130847)	TTS (NM_130847)	96750	NM_016403	51503	Hs.503597	NM_016403	HPRD:13703	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_62875	chr21	18862012	18862120	+	7.82273	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-23158	NM_001338	1525	Hs.627078	NM_001338	HPRD:11804	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
19-PTNLD28-TUMOR_peak_95527	chr7	134681133	134681261	+	7.82273	NA	intron (NM_178563, intron 4 of 16)	intron (NM_178563, intron 4 of 16)	9938	NM_178563	340351	Hs.648616	NM_178563	HPRD:14175	AGBL3	CCP3	ATP/GTP binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_106671	chr9	137915311	137915576	+	7.82273	NA	Intergenic	Intergenic	-51646	NM_014279	10439	Hs.522484	NM_006334	HPRD:09249	OLFM1	AMY|NOE1|NOELIN1|OlfA	olfactomedin 1	protein-coding
19-PTNLD28-TUMOR_peak_76408	chr4	102288440	102288572	+	7.82273	NA	Intergenic	L1MCa|LINE|L1	19572	NR_033874	90024	Hs.534513	NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
19-PTNLD28-TUMOR_peak_68915	chr3	69317396	69317503	+	7.82273	NA	intron (NM_015123, intron 5 of 22)	intron (NM_015123, intron 5 of 22)	118006	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_74763	chr4	24014181	24014269	+	7.82273	NA	Intergenic	Intergenic	-122525	NM_013261	10891	Hs.527078	NM_013261	HPRD:05155	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_63443	chr21	38419443	38419634	+	7.82273	NA	Intergenic	L1PB1|LINE|L1	25565	NM_153681	51227	Hs.656565	NM_153681	HPRD:05806	PIGP	DCRC|DCRC-S|DSCR5|DSRC	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding
19-PTNLD28-TUMOR_peak_29804	chr14	34025739	34025913	+	7.82273	NA	intron (NM_001165893, intron 3 of 10)	L2c|LINE|L2	394458	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_15985	chr10	122702470	122702638	+	7.82273	NA	intron (NR_049879, intron 3 of 4)	intron (NR_049879, intron 3 of 4)	-91863	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28616	chr13	81358001	81358327	+	7.82273	NA	Intergenic	Intergenic	-234362	NR_125770	103724386	Hs.539622	NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
19-PTNLD28-TUMOR_peak_76733	chr4	118104469	118104557	+	7.82273	NA	Intergenic	LTR5_Hs|LTR|ERVK	-97777	NM_152402	133022	Hs.570737	NM_152402	HPRD:11643	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_77157	chr4	139840413	139840510	+	7.82273	NA	Intergenic	Intergenic	-96452	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75418	chr4	57229376	57229464	+	7.82273	NA	intron (NM_001286670, intron 4 of 11)	L1PA4|LINE|L1	24254	NM_001286669	132949	Hs.104347	NM_181806	HPRD:12398	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_86241	chr6	27618680	27618768	+	7.82273	NA	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-43090	NR_038293	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_109046	chrX	103614922	103615091	+	7.82273	NA	Intergenic	Intergenic	-115407	NM_153448	80712	Hs.223782	NM_153448	HPRD:06503	ESX1	ESX1L|ESXR1	ESX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_15507	chr10	106390648	106390797	+	7.82273	NA	Intergenic	Intergenic	-10137	NM_014978	22986	Hs.671950	NM_014978	HPRD:12100	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_91505	chr7	20687935	20688034	+	7.82273	NA	intron (NM_001163942, intron 2 of 5)	MamRep1161|DNA|TcMar	1018	NM_001163993	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
19-PTNLD28-TUMOR_peak_40868	chr17	28049787	28049875	+	7.82273	NA	intron (NM_001282130, intron 2 of 7)	intron (NM_001282130, intron 2 of 7)	38619	NM_001282131	85464	Hs.654754	NM_033389	HPRD:09487	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_41485	chr17	39992241	39992517	+	7.82273	NA	non-coding (NR_033465, exon 1 of 8)	non-coding (NR_033465, exon 1 of 8)	109	NR_033464	115024	Hs.237536	NM_052935	HPRD:14475	NT5C3B	NT5C3L	5'-nucleotidase, cytosolic IIIB	protein-coding
19-PTNLD28-TUMOR_peak_81781	chr5	121531623	121531711	+	7.82273	NA	Intergenic	Intergenic	35796	NM_001195535	100505841	Hs.733368	NM_001195535		LOC100505841	-	zinc finger protein 474-like	protein-coding
19-PTNLD28-TUMOR_peak_100007	chr8	107205212	107205527	+	7.82273	NA	Intergenic	Intergenic	-77037	NM_018002	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_82365	chr5	135793550	135793640	+	7.82273	NA	Intergenic	Intergenic	-92431	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_103362	chr9	46445474	46445600	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-58164	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_34386	chr15	72605100	72605235	+	7.82273	NA	intron (NM_001172684, intron 2 of 11)	intron (NM_001172684, intron 2 of 11)	-6511	NM_001172685	60677	Hs.348342	NM_052840	HPRD:10691	CELF6	BRUNOL6	CUGBP, Elav-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_78784	chr5	7869631	7869898	+	7.82273	NA	promoter-TSS (NM_024091)	promoter-TSS (NM_024091)	547	NM_002454	4552	Hs.481551	NM_002454	HPRD:03979	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
19-PTNLD28-TUMOR_peak_34185	chr15	68908886	68909022	+	7.82273	NA	promoter-TSS (NM_001190456)	promoter-TSS (NM_001190456)	75	NM_001190456	10391	Hs.551213	NM_006091	HPRD:05416	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
19-PTNLD28-TUMOR_peak_54864	chr2	110914193	110914343	+	7.82273	NA	intron (NM_207181, intron 11 of 19)	L1MEb|LINE|L1	-40125	NM_005434	7851	Hs.185055	NM_005434	HPRD:15997	MALL	BENE	mal, T-cell differentiation protein-like	protein-coding
19-PTNLD28-TUMOR_peak_23086	chr12	12441325	12441427	+	7.82273	NA	Intergenic	AluY|SINE|Alu	-21565	NM_002336	4040	Hs.584775	NM_002336	HPRD:04617	LRP6	ADCAD2	low density lipoprotein receptor-related protein 6	protein-coding
19-PTNLD28-TUMOR_peak_109261	chrX	117420481	117420634	+	7.82273	NA	Intergenic	Intergenic	-59479	NM_001184965	54521	Hs.98510	NM_019045	HPRD:11682	WDR44	RAB11BP|RPH11	WD repeat domain 44	protein-coding
19-PTNLD28-TUMOR_peak_107480	chrX	8575486	8575681	+	7.82273	NA	intron (NM_000216, intron 3 of 13)	intron (NM_000216, intron 3 of 13)	124644	NM_000216	3730	Hs.521869	NM_000216	HPRD:02393	KAL1	ADMLX|HH1|HHA|KAL|KALIG-1|KMS|WFDC19	Kallmann syndrome 1 sequence	protein-coding
19-PTNLD28-TUMOR_peak_56279	chr2	150920000	150920103	+	7.82273	NA	Intergenic	L2c|LINE|L2	424158	NM_005168	390	Hs.6838	NM_005168	HPRD:04233	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding
19-PTNLD28-TUMOR_peak_84828	chr6	2869004	2869144	+	7.82273	NA	intron (NR_033851, intron 1 of 1)	intron (NR_033851, intron 1 of 1)	7670	NR_033851	221756	Hs.8162	NM_182544		SERPINB9P1	SERPINB9P	serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_67448	chr3	33173242	33173405	+	7.82273	NA	intron (NM_006371, intron 4 of 6)	intron (NM_006371, intron 4 of 6)	17873	NM_006371	10491	Hs.517888	NM_006371	HPRD:16110	CRTAP	CASP|LEPREL3|OI7	cartilage associated protein	protein-coding
19-PTNLD28-TUMOR_peak_105770	chr9	122084523	122084749	+	7.82273	NA	intron (NM_014618, intron 1 of 7)	intron (NM_014618, intron 1 of 7)	47103	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_42698	chr17	58180016	58180168	+	7.82273	NA	non-coding (NR_027408, exon 1 of 1)	non-coding (NR_027408, exon 1 of 1)	188	NR_027408	653653	Hs.631741	NR_027408		LOC653653	-	adaptor-related protein complex 1, sigma 2 subunit pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105761	chr9	121850421	121850667	+	7.82273	NA	Intergenic	Intergenic	281195	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_51254	chr2	15612448	15612536	+	7.82273	NA	intron (NR_052013, intron 16 of 50)	intron (NR_052013, intron 16 of 50)	88980	NR_052013	51594	Hs.467759	NM_015909	HPRD:10473	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
19-PTNLD28-TUMOR_peak_76686	chr4	114495830	114495926	+	7.82273	NA	intron (NM_172114, intron 4 of 17)	intron (NM_172114, intron 4 of 17)	187205	NM_172127	817	Hs.144114	NM_001221	HPRD:09653	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
19-PTNLD28-TUMOR_peak_89827	chr6	145984444	145984547	+	7.82273	NA	intron (NM_001018041, intron 2 of 4)	L1PA2|LINE|L1	-71510	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
19-PTNLD28-TUMOR_peak_97413	chr8	19215051	19215379	+	7.82273	NA	intron (NM_022071, intron 5 of 9)	intron (NM_022071, intron 5 of 9)	43728	NM_001174159	63898	Hs.303208	NM_022071	HPRD:08340	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_60390	chr20	30014190	30014457	+	7.82273	NA	intron (NR_045677, intron 2 of 2)	SVA_D|Other|Other	2660	NR_045677	245935	Hs.526624	NR_002577	ENSG00000204547	DEFB122	DEFB-22|DEFB122P	defensin, beta 122 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_50820	chr2	1890319	1890413	+	7.82273	NA	exon (NM_015025, exon 18 of 25)	exon (NM_015025, exon 18 of 25)	-142047	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_102548	chr9	27165763	27165906	+	7.82273	NA	intron (NM_001290077, intron 2 of 21)	intron (NM_001290077, intron 2 of 21)	56695	NM_001290078	7010	Hs.89640	NM_000459	HPRD:02571	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK tyrosine kinase, endothelial	protein-coding
19-PTNLD28-TUMOR_peak_57502	chr2	191979276	191979435	+	7.82273	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	36631	NM_003151	6775	Hs.80642	NM_003151	HPRD:02779	STAT4	SLEB11	signal transducer and activator of transcription 4	protein-coding
19-PTNLD28-TUMOR_peak_52668	chr2	47615542	47615646	+	7.82273	NA	Intergenic	LTR41|LTR|ERVL	10780	NR_030286	693144		NR_030286		MIR559	MIRN559|hsa-mir-559	microRNA 559	ncRNA
19-PTNLD28-TUMOR_peak_53484	chr2	73391025	73391119	+	7.82273	NA	Intergenic	Intergenic	-38314	NM_001134462	344022	Hs.694384	NM_001134462		NOTO	-	notochord homeobox	protein-coding
19-PTNLD28-TUMOR_peak_82511	chr5	138646635	138646852	+	7.82273	NA	intron (NM_199189, intron 5 of 17)	AluSp|SINE|Alu	17304	NM_001194956	9782	Hs.268939	NM_018834	HPRD:05270	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
19-PTNLD28-TUMOR_peak_76344	chr4	98577340	98577428	+	7.82273	NA	intron (NM_174952, intron 10 of 10)	Zaphod|DNA|hAT-Tip100	289307	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41163	chr17	35258915	35259046	+	7.82273	NA	Intergenic	Intergenic	-35792	NM_005568	3975	Hs.443727	NM_005568	HPRD:09067	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_71275	chr3	139934430	139934602	+	7.82273	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	280489	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_32588	chr15	23607966	23608098	+	7.82273	NA	intron (NR_038843, intron 12 of 17)	intron (NR_038843, intron 12 of 17)	8137	NR_038843	653061	Hs.528454	NR_038843		GOLGA8S	-	golgin A8 family, member S	pseudo
19-PTNLD28-TUMOR_peak_108536	chrX	62644053	62644285	+	7.82273	NA	Intergenic	Intergenic	-72951	NM_001012968	139886	Hs.612782	NM_001012968	HPRD:12556	SPIN4	-	spindlin family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_105441	chr9	114690758	114690851	+	7.82273	NA	intron (NM_003358, intron 5 of 8)	intron (NM_003358, intron 5 of 8)	-3576	NR_039814	100616114		NR_039814		MIR4668	-	microRNA 4668	ncRNA
19-PTNLD28-TUMOR_peak_56649	chr2	161850924	161851146	+	7.82273	NA	Intergenic	Intergenic	-142431	NM_133484	10010	Hs.132257	NM_004180	HPRD:04870	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member-associated NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_45773	chr18	48609341	48609464	+	7.82273	NA	3' UTR (NM_005359, exon 12 of 12)	3' UTR (NM_005359, exon 12 of 12)	52819	NM_005359	4089	Hs.75862	NM_005359	HPRD:02995	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
19-PTNLD28-TUMOR_peak_97081	chr8	9039131	9039295	+	7.82273	NA	Intergenic	Intergenic	-7296	NR_125431	101929128		NR_125431		LOC101929128	-	uncharacterized LOC101929128	ncRNA
19-PTNLD28-TUMOR_peak_25603	chr12	93847500	93847770	+	7.82273	NA	Intergenic	AluJr|SINE|Alu	-11609	NM_003348	7334	Hs.524630	NM_003348		UBE2N	HEL-S-71|UBC13|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin-conjugating enzyme E2N	protein-coding
19-PTNLD28-TUMOR_peak_921	chr1	14155501	14155592	+	7.82273	NA	Intergenic	Intergenic	79670	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_35349	chr15	95562272	95562399	+	7.82273	NA	Intergenic	Intergenic	163743	NR_077061	440311	Hs.745156	NR_077061	ENSG00000260521	LOC440311	-	glioma tumor suppressor candidate region gene 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_97693	chr8	23508443	23508686	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	31838	NM_001256339	4824	Hs.55999	NM_006167	HPRD:03620	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_11363	chr1	243806380	243806507	+	7.82273	NA	intron (NM_181690, intron 4 of 13)	intron (NM_181690, intron 4 of 13)	200141	NM_181690	10000	Hs.498292	NM_005465	HPRD:06441	AKT3	MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	v-akt murine thymoma viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_12175	chr10	15627391	15627486	+	7.82273	NA	intron (NM_001291494, intron 22 of 28)	intron (NM_001291494, intron 22 of 28)	134896	NM_001291494	8516	Hs.171311	NM_003638		ITGA8	-	integrin, alpha 8	protein-coding
19-PTNLD28-TUMOR_peak_52183	chr2	38104742	38104862	+	7.82273	NA	Intergenic	Intergenic	-1796	NR_110012	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
19-PTNLD28-TUMOR_peak_107636	chrX	15616249	15616426	+	7.82273	NA	intron (NM_021804, intron 2 of 18)	intron (NM_021804, intron 2 of 18)	3855	NM_021804	59272	Hs.178098	NM_021804	HPRD:02274	ACE2	ACEH	angiotensin I converting enzyme 2	protein-coding
19-PTNLD28-TUMOR_peak_5653	chr1	114040275	114040401	+	7.82273	NA	intron (NM_001142782, intron 1 of 20)	L1HS|LINE|L1	106863	NM_152900	260425	Hs.486189	NM_020965	HPRD:11290	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_106013	chr9	126431805	126431926	+	7.82273	NA	intron (NM_020946, intron 7 of 21)	intron (NM_020946, intron 7 of 21)	-183964	NR_106972	102465688		NR_106972		MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
19-PTNLD28-TUMOR_peak_50232	chr19	54274604	54274702	+	7.82273	NA	Intergenic	Intergenic	9055	NR_030222	574500		NR_030222	miRBase:MI0003182	MIR519A2	MIRN519A-2|MIRN519A2	microRNA 519a-2	ncRNA
19-PTNLD28-TUMOR_peak_75625	chr4	72459299	72459411	+	7.82273	NA	Intergenic	Intergenic	190724	NM_000583	2638	Hs.418497	NM_000583	HPRD:00749	GC	DBP|DBP/GC|GRD3|HEL-S-51|VDBG|VDBP	group-specific component (vitamin D binding protein)	protein-coding
19-PTNLD28-TUMOR_peak_55627	chr2	129695375	129695624	+	7.82273	NA	Intergenic	L1MCa|LINE|L1	73325	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_3455	chr1	51527027	51527182	+	7.82273	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-40802	NM_001136508	284546	Hs.176177	NM_001136508	ENSG00000204006	C1orf185	-	chromosome 1 open reading frame 185	protein-coding
19-PTNLD28-TUMOR_peak_17813	chr11	31566074	31566171	+	7.82273	NA	intron (NM_019040, intron 3 of 9)	L1PA3|LINE|L1	34846	NM_019040	26610	Hs.175534	NM_019040	HPRD:07377	ELP4	AN|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4	elongator acetyltransferase complex subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_59865	chr20	13317008	13317225	+	7.82273	NA	Intergenic	Intergenic	-96782	NR_040043	100505536	Hs.665253	NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_79236	chr5	23352681	23352776	+	7.82273	NA	Intergenic	MER41A|LTR|ERV1	-154996	NM_020227	56979	Hs.283096	NM_020227	HPRD:17905	PRDM9	MEISETZ|MSBP3|PFM6|PRMD9|ZNF899	PR domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_82928	chr5	144617601	144617702	+	7.82273	NA	Intergenic	Intergenic	597281	NM_138492	153768	Hs.314261	NM_138492	HPRD:14479	PRELID2	-	PRELI domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89290	chr6	120964225	120964338	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	691365	NR_104452	221322	Hs.121396	NM_152730	HPRD:12867	TBC1D32	BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	TBC1 domain family, member 32	protein-coding
19-PTNLD28-TUMOR_peak_77803	chr4	158049676	158049769	+	7.82273	NA	intron (NM_000824, intron 4 of 9)	intron (NM_000824, intron 4 of 9)	52167	NM_001166060	2743	Hs.32973	NM_000824	HPRD:11751	GLRB	HKPX2	glycine receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_27470	chr13	24345751	24345857	+	7.82273	NA	intron (NM_005932, intron 16 of 18)	intron (NM_005932, intron 16 of 18)	-117224	NM_001014442	542767	Hs.642624	NM_001014442		C1QTNF9B-AS1	PCOTH	C1QTNF9B antisense RNA 1	protein-coding
19-PTNLD28-TUMOR_peak_79591	chr5	38830686	38830827	+	7.82273	NA	intron (NR_109951, intron 1 of 3)	MER91A|DNA|hAT-Tip100	15175	NR_109951	101929768	Hs.546623	NR_109951		OSMR-AS1	CTD-2127H9.1	OSMR antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_18716	chr11	58456359	58456472	+	7.82273	NA	Intergenic	Intergenic	43032	NM_005838	10249	Hs.145384	NM_005838	HPRD:07603	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_108753	chrX	73386554	73386788	+	7.82273	NA	intron (NR_028379, intron 5 of 6)	SVA_D|Other|Other	51625	NR_030398	693122		NR_030398	miRBase:MI0003685	MIR421	MIRN421|hsa-mir-421	microRNA 421	ncRNA
19-PTNLD28-TUMOR_peak_53711	chr2	83995875	83995968	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-521885	NR_003663	388965	Hs.664098	NM_001013648	HPRD:18390	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_75549	chr4	66536039	66536243	+	7.82273	NA	promoter-TSS (NM_004439)	promoter-TSS (NM_004439)	72	NM_001281766	2044	Hs.654492	NM_004439	HPRD:02474	EPHA5	CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4	EPH receptor A5	protein-coding
19-PTNLD28-TUMOR_peak_92059	chr7	37683673	37683834	+	7.82273	NA	Intergenic	MER76|LTR|ERVL	-96243	NM_181791	353345	Hs.688230	NM_181791	HPRD:16423	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
19-PTNLD28-TUMOR_peak_85558	chr6	14706722	14706870	+	7.82273	NA	Intergenic	Intergenic	-421111	NR_108096	102216342	Hs.563409	NR_108096		LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
19-PTNLD28-TUMOR_peak_76980	chr4	125935185	125935316	+	7.82273	NA	Intergenic	Intergenic	-301363	NM_020337	57182	Hs.480694	NM_020337	HPRD:13843	ANKRD50	-	ankyrin repeat domain 50	protein-coding
19-PTNLD28-TUMOR_peak_45240	chr18	33932481	33932654	+	7.82273	NA	intron (NM_001281739, intron 1 of 23)	intron (NM_001281739, intron 1 of 23)	54908	NM_001281739	80206	Hs.630884	NM_025135	HPRD:16894	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_30279	chr14	52232685	52232913	+	7.82273	NA	Intergenic	Intergenic	48798	NM_001267047	122786	Hs.434914	NM_152330	HPRD:12646	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_5016	chr1	94988004	94988122	+	7.82273	NA	Intergenic	Intergenic	19350	NM_001178096	2152	Hs.62192	NM_001993	HPRD:00603	F3	CD142|TF|TFA	coagulation factor III (thromboplastin, tissue factor)	protein-coding
19-PTNLD28-TUMOR_peak_23489	chr12	26899427	26899527	+	7.82273	NA	intron (NM_002223, intron 2 of 56)	intron (NM_002223, intron 2 of 56)	86654	NM_002223	3709	Hs.512235	NM_002223	HPRD:02536	ITPR2	CFAP48|IP3R2	inositol 1,4,5-trisphosphate receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_80587	chr5	71768695	71768849	+	7.82273	NA	intron (NM_152625, intron 1 of 4)	intron (NM_152625, intron 1 of 4)	34477	NM_152625	167465	Hs.370303	NM_152625	HPRD:18329	ZNF366	DCSCRIPT	zinc finger protein 366	protein-coding
19-PTNLD28-TUMOR_peak_57553	chr2	192847883	192848370	+	7.82273	NA	intron (NM_016192, intron 7 of 9)	intron (NM_016192, intron 7 of 9)	-136120	NM_004657	8436	Hs.26530	NM_004657	HPRD:09470	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding
19-PTNLD28-TUMOR_peak_42306	chr17	49124130	49124340	+	7.82273	NA	promoter-TSS (NM_001251971)	promoter-TSS (NM_001251971)	94	NM_001251971	9043	Hs.463439	NM_003971	HPRD:10398	SPAG9	CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
19-PTNLD28-TUMOR_peak_37941	chr16	55910869	55911009	+	7.82273	NA	intron (NM_001190158, intron 2 of 13)	intron (NM_001190158, intron 2 of 13)	-1657	NM_145024	221223	Hs.350800	NM_145024	HPRD:07016	CES5A	CAUXIN|CES4C1|CES5|CES7|HEL126	carboxylesterase 5A	protein-coding
19-PTNLD28-TUMOR_peak_35497	chr15	101233800	101233917	+	7.82273	NA	Intergenic	Intergenic	91103	NM_198243	140460	Hs.31845	NM_024708	HPRD:10674	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
19-PTNLD28-TUMOR_peak_89838	chr6	146755610	146755751	+	7.82273	NA	exon (NM_001278064, exon 8 of 8)	exon (NM_001278064, exon 8 of 8)	-109148	NM_006834	10981	Hs.287714	NM_006834	HPRD:06700	RAB32	-	RAB32, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_17576	chr11	19475587	19475689	+	7.82273	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	53138	NR_049725	100874012	Hs.434602	NR_049725	ENSG00000255043	NAV2-AS5	-	NAV2 antisense RNA 5	ncRNA
19-PTNLD28-TUMOR_peak_8197	chr1	172294828	172294981	+	7.82273	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-94924	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_64604	chr22	22375743	22375841	+	7.82273	NA	Intergenic	Intergenic	-38552	NM_001282113	8940	Hs.436401	NM_003935	HPRD:04662	TOP3B	TOP3B1	topoisomerase (DNA) III beta	protein-coding
19-PTNLD28-TUMOR_peak_16187	chr10	127622991	127623098	+	7.82273	NA	intron (NM_145235, intron 1 of 10)	intron (NM_145235, intron 1 of 10)	37936	NM_145235	92565	Hs.352591	NM_145235	HPRD:09945	FANK1	-	fibronectin type III and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_33674	chr15	56635023	56635188	+	7.82273	NA	Intergenic	Intergenic	-22517	NM_001286449	374618	Hs.511476	NM_198524	HPRD:15493	TEX9	-	testis expressed 9	protein-coding
19-PTNLD28-TUMOR_peak_77585	chr4	152252833	152253065	+	7.82273	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	54624	NM_183375	345062	Hs.651266	NM_183375	HPRD:07110	PRSS48	ESSPL	protease, serine, 48	protein-coding
19-PTNLD28-TUMOR_peak_65195	chr22	32774798	32774901	+	7.82273	NA	intron (NR_038918, intron 2 of 2)	intron (NR_038918, intron 2 of 2)	2198	NR_038918	339666	Hs.654761	NR_038918	ENSG00000230736	LOC339666	-	uncharacterized LOC339666	ncRNA
19-PTNLD28-TUMOR_peak_68372	chr3	53074368	53074510	+	7.82273	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	5650	NM_016329	51460	Hs.343679	NM_016329	HPRD:09539	SFMBT1	RU1|SFMBT|hSFMBT	Scm-like with four mbt domains 1	protein-coding
19-PTNLD28-TUMOR_peak_70015	chr3	118706450	118706619	+	7.82273	NA	intron (NM_152538, intron 3 of 8)	intron (NM_152538, intron 3 of 8)	44611	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89082	chr6	110778921	110779230	+	7.82273	NA	intron (NM_033125, intron 1 of 7)	LTR13|LTR|ERVK	18769	NM_033125	85413	Hs.520319	NM_033125	HPRD:12202	SLC22A16	CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 (organic cation/carnitine transporter), member 16	protein-coding
19-PTNLD28-TUMOR_peak_98846	chr8	56313505	56313820	+	7.82273	NA	intron (NM_052898, intron 2 of 2)	intron (NM_052898, intron 2 of 2)	54219	NR_027765	100133234	Hs.729852	NR_027765	ENSG00000248522	SBF1P1	-	SET binding factor 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_91526	chr7	21293802	21293904	+	7.82273	NA	Intergenic	Intergenic	-173836	NM_003112	6671	Hs.88013	NM_003112	HPRD:02764	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_68885	chr3	68495861	68496055	+	7.82273	NA	intron (NM_213609, intron 3 of 4)	intron (NM_213609, intron 3 of 4)	442599	NM_213609	407738	Hs.655061	NM_213609	HPRD:13294	FAM19A1	TAFA-1|TAFA1	family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	protein-coding
19-PTNLD28-TUMOR_peak_38912	chr16	80139239	80139362	+	7.82273	NA	Intergenic	Intergenic	310154	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_74535	chr4	11652431	11652819	+	7.82273	NA	Intergenic	Intergenic	-222088	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_108729	chrX	71695369	71695476	+	7.82273	NA	intron (NM_001166419, intron 7 of 7)	intron (NM_001166419, intron 7 of 7)	97531	NM_001166448	55869	Hs.310536	NM_018486	HPRD:02227	HDAC8	CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
19-PTNLD28-TUMOR_peak_89824	chr6	145804389	145804580	+	7.82273	NA	Intergenic	Intergenic	-251521	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA
19-PTNLD28-TUMOR_peak_57297	chr2	182639461	182639719	+	7.82273	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-94198	NM_002500	4760	Hs.574626	NM_002500	HPRD:03428	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
19-PTNLD28-TUMOR_peak_12271	chr10	19991268	19991359	+	7.82273	NA	intron (NM_001142308, intron 38 of 39)	intron (NM_001142308, intron 38 of 39)	26166	NR_120646	101928834	Hs.676482	NR_120646	ENSG00000233968	LOC101928834	-	uncharacterized LOC101928834	ncRNA
19-PTNLD28-TUMOR_peak_8900	chr1	186157428	186157652	+	7.82273	NA	intron (NM_031935, intron 106 of 106)	intron (NM_031935, intron 106 of 106)	-107865	NM_001127709	10216	Hs.647723	NM_005807	HPRD:05047	PRG4	CACP|HAPO|JCAP|MSF|SZP|bG174L6.2	proteoglycan 4	protein-coding
19-PTNLD28-TUMOR_peak_40738	chr17	25850826	25851018	+	7.82273	NA	intron (NM_014238, intron 2 of 20)	MLT1J|LTR|ERVL-MaLR	51886	NM_014238	8844	Hs.133534	NM_014238		KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
19-PTNLD28-TUMOR_peak_18700	chr11	58335553	58335642	+	7.82273	NA	intron (NM_001143995, intron 2 of 8)	BLACKJACK|DNA|hAT-Blackjack	7793	NM_004811	9404	Hs.125474	NM_004811	HPRD:05651	LPXN	LDPL	leupaxin	protein-coding
19-PTNLD28-TUMOR_peak_13814	chr10	62576458	62576561	+	7.82273	NA	Intergenic	Intergenic	38297	NM_033379	983	Hs.732435	NM_001786	HPRD:00302	CDK1	CDC2|CDC28A|P34CDC2	cyclin-dependent kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_25418	chr12	79660684	79660795	+	7.82273	NA	intron (NM_005639, intron 4 of 10)	intron (NM_005639, intron 4 of 10)	-152298	NR_031700	100302136		NR_031700		MIR1252	MIRN1252|hsa-mir-1252	microRNA 1252	ncRNA
19-PTNLD28-TUMOR_peak_35679	chr16	964607	964736	+	7.82273	NA	intron (NM_022773, intron 2 of 10)	intron (NM_022773, intron 2 of 10)	-6362	NR_110945	101929387	Hs.737087	NR_110945		LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_67620	chr3	39336741	39336948	+	7.82273	NA	Intergenic	Intergenic	-13618	NM_001171174	1524	Hs.78913	NM_001337	HPRD:03277	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	chemokine (C-X3-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_79657	chr5	41115554	41115665	+	7.82273	NA	Intergenic	Intergenic	-44165	NM_173489	133558	Hs.97714	NM_173489	HPRD:08808	MROH2B	HEATR7B2	maestro heat-like repeat family member 2B	protein-coding
19-PTNLD28-TUMOR_peak_88566	chr6	84686658	84686771	+	7.82273	NA	Intergenic	LTR10F|LTR|ERV1	-56706	NM_138409	112609	Hs.370055	NM_138409	HPRD:12843	MRAP2	BMIQ18|C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_106472	chr9	134120460	134120600	+	7.82273	NA	Intergenic	LTR13|LTR|ERVK	31376	NM_033387	286336	Hs.143878	NM_033387	HPRD:12968	FAM78A	C9orf59	family with sequence similarity 78, member A	protein-coding
19-PTNLD28-TUMOR_peak_25092	chr12	67217785	67217875	+	7.82273	NA	Intergenic	Intergenic	-144905	NM_021150	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10762	chr1	230029673	230029801	+	7.82273	NA	Intergenic	Intergenic	-163799	NM_001291866	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_29416	chr14	22314640	22314774	+	7.82273	NA	Intergenic	Intergenic	181410	NM_001001912	26686	Hs.547982	NM_001001912	HPRD:11414	OR4E2	OR14-42	olfactory receptor, family 4, subfamily E, member 2	protein-coding
19-PTNLD28-TUMOR_peak_64957	chr22	29059472	29059565	+	7.82273	NA	intron (NM_001145418, intron 1 of 22)	L1HS|LINE|L1	16335	NM_001145418	23331	Hs.387856	NM_015281	HPRD:10020	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_92511	chr7	49839737	49839913	+	7.82273	NA	intron (NM_198570, intron 2 of 3)	intron (NM_198570, intron 2 of 3)	26568	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_71129	chr3	137585821	137586151	+	7.82273	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	95233	NR_109987	100507274	Hs.360349	NR_109987		LINC01210	-	long intergenic non-protein coding RNA 1210	ncRNA
19-PTNLD28-TUMOR_peak_24136	chr12	49822799	49822924	+	7.82273	NA	intron (NM_001293285, intron 3 of 14)	intron (NM_001293285, intron 3 of 14)	39904	NR_033267	100335030	Hs.687044	NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_79247	chr5	24161772	24161905	+	7.82273	NA	Intergenic	Intergenic	483247	NM_006727	1008	Hs.92489	NM_006727	HPRD:05187	CDH10	-	cadherin 10, type 2 (T2-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_107819	chrX	23837769	23838177	+	7.82273	NA	Intergenic	L1MB7|LINE|L1	36698	NR_027783	6303	Hs.28491	NM_002970	HPRD:02431	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_45471	chr18	43554173	43554317	+	7.82273	NA	Intergenic	Intergenic	-6940	NM_020964	57724	Hs.514843	NM_020964	HPRD:11157	EPG5	HEEW1|KIAA1632|VICIS|hEPG5	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_43083	chr17	65796657	65796759	+	7.82273	NA	Intergenic	Intergenic	-25072	NM_004459	2186	Hs.444200	NM_004459	HPRD:03490	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_20372	chr11	82952489	82952627	+	7.82273	NA	intron (NM_182603, intron 9 of 9)	L2a|LINE|L2	44892	NM_001286117	60492	Hs.368866	NM_021825	HPRD:14378	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
19-PTNLD28-TUMOR_peak_94030	chr7	95108209	95108299	+	7.82273	NA	Intergenic	Intergenic	-6959	NM_016116	51666	Hs.602765	NM_016116	HPRD:05770	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_13306	chr10	45826184	45826349	+	7.82273	NA	Intergenic	SVA_D|Other|Other	-15210	NM_001004297	79290	Hs.532435	NM_001004297	HPRD:14904	OR13A1	-	olfactory receptor, family 13, subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_21082	chr11	110333997	110334127	+	7.82273	NA	3' UTR (NM_004109, exon 4 of 4)	3' UTR (NM_004109, exon 4 of 4)	33401	NM_004109	2230	Hs.744	NM_004109	HPRD:00059	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
19-PTNLD28-TUMOR_peak_107836	chrX	24517192	24517300	+	7.82273	NA	intron (NM_001142386, intron 3 of 11)	intron (NM_001142386, intron 3 of 11)	33902	NM_005391	5165	Hs.296031	NM_005391	HPRD:03956	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase, isozyme 3	protein-coding
19-PTNLD28-TUMOR_peak_75801	chr4	77789368	77789541	+	7.82273	NA	Intergenic	L1PA11|LINE|L1	29548	NM_001029870	345079	Hs.257292	NM_001029870	HPRD:18789	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
19-PTNLD28-TUMOR_peak_15537	chr10	108337165	108337387	+	7.82273	NA	exon (NM_052918, exon 26 of 26)	exon (NM_052918, exon 26 of 26)	587190	NM_001206572	114815	Hs.591915	NM_052918	HPRD:12098	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_105087	chr9	106462877	106462998	+	7.82273	NA	Intergenic	LTR33|LTR|ERVL	-299053	NR_109803	101928523		NR_109803		LOC101928523	-	uncharacterized LOC101928523	ncRNA
19-PTNLD28-TUMOR_peak_109216	chrX	113135778	113135895	+	7.82273	NA	Intergenic	MER76|LTR|ERVL	-682715	NM_001256761	3358	Hs.149037	NM_000868	HPRD:02429	HTR2C	5-HT2C|5-HTR2C|5HTR2C|HTR1C	5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_83053	chr5	147699922	147700097	+	7.82273	NA	intron (NR_105057, intron 2 of 4)	L1P1|LINE|L1	8019	NM_032566	84651	Hs.244569	NM_032566	HPRD:16850	SPINK7	ECG2|ECRG2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_63285	chr21	35407047	35407154	+	7.82273	NA	Intergenic	Intergenic	-38723	NM_006933	6526	Hs.302742	NM_006933	HPRD:02708	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 (sodium/myo-inositol cotransporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_102353	chr9	18633024	18633138	+	7.82273	NA	intron (NM_001040272, intron 5 of 28)	intron (NM_001040272, intron 5 of 28)	59777	NR_036107	100422869		NR_036107		MIR3152	-	microRNA 3152	ncRNA
19-PTNLD28-TUMOR_peak_42394	chr17	53591407	53591611	+	7.82273	NA	Intergenic	Intergenic	-92168	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_56716	chr2	164055501	164055801	+	7.82273	NA	Intergenic	Intergenic	-360394	NM_033272	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_76764	chr4	119693387	119693475	+	7.82273	NA	intron (NM_014822, intron 8 of 22)	intron (NM_014822, intron 8 of 22)	63895	NM_014822	9871	Hs.189641	NM_014822	HPRD:06218	SEC24D	-	SEC24 family member D	protein-coding
19-PTNLD28-TUMOR_peak_27899	chr13	40176828	40177005	+	7.82273	NA	intron (NM_005780, intron 1 of 3)	CpG	440	NM_005780	10186	Hs.507798	NM_005780	HPRD:09464	LHFP	-	lipoma HMGIC fusion partner	protein-coding
19-PTNLD28-TUMOR_peak_100847	chr8	129009538	129009743	+	7.82273	NA	intron (NR_003367, intron 4 of 7)	MIR3|SINE|MIR	-11504	NR_031611	100302170		NR_031611		MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_87909	chr6	50778316	50778476	+	7.82273	NA	Intergenic	SVA_C|Other|Other	-8043	NM_003221	7021	Hs.33102	NM_003221	HPRD:03360	TFAP2B	AP-2B|AP2-B	transcription factor AP-2 beta (activating enhancer binding protein 2 beta)	protein-coding
19-PTNLD28-TUMOR_peak_72044	chr3	159322025	159322245	+	7.82273	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	164266	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18591	chr11	55453620	55453710	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	21022	NM_001004704	219432	Hs.511921	NM_001004704	HPRD:17724	OR4C6	OR11-138	olfactory receptor, family 4, subfamily C, member 6	protein-coding
19-PTNLD28-TUMOR_peak_91839	chr7	30460012	30460100	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	29555	NR_108081	100506516		NR_108081		LINC01176	-	long intergenic non-protein coding RNA 1176	ncRNA
19-PTNLD28-TUMOR_peak_23826	chr12	42471967	42472263	+	7.82273	NA	Intergenic	MER20|DNA|hAT-Charlie	66558	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_75080	chr4	41477529	41477732	+	7.82273	NA	intron (NM_001289122, intron 1 of 25)	intron (NM_001289122, intron 1 of 25)	114828	NM_001289122	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_104675	chr9	96827900	96828030	+	7.82273	NA	intron (NM_177995, intron 2 of 9)	intron (NM_177995, intron 2 of 9)	-18746	NM_152422	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_40139	chr17	9024776	9025106	+	7.82273	NA	intron (NM_004822, intron 2 of 6)	intron (NM_004822, intron 2 of 6)	57494	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_62957	chr21	26701610	26701764	+	7.82273	NA	Intergenic	Intergenic	102326	NR_024027	54072	Hs.234016	NM_058184	HPRD:10748	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
19-PTNLD28-TUMOR_peak_1348	chr1	21985795	21985934	+	7.82273	NA	intron (NM_002885, intron 1 of 24)	CpG	-7516	NM_001145658	5909	Hs.148178	NM_002885	HPRD:02609	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_64908	chr22	27744060	27744190	+	7.82273	NA	Intergenic	MER113|DNA|hAT-Charlie	444870	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_9114	chr1	200084791	200085008	+	7.82273	NA	intron (NM_205860, intron 6 of 7)	intron (NM_205860, intron 6 of 7)	72946	NM_001276464	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_16233	chr10	129789547	129789777	+	7.82273	NA	intron (NM_006504, intron 2 of 20)	intron (NM_006504, intron 2 of 20)	-56151	NM_130435	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_67901	chr3	45965356	45965447	+	7.82273	NA	intron (NM_024513, intron 16 of 17)	intron (NM_024513, intron 16 of 17)	-8185	NM_001276378	54585	Hs.30824	NM_020347	HPRD:07586	LZTFL1	BBS17	leucine zipper transcription factor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31548	chr14	83157669	83157832	+	7.82273	NA	Intergenic	Intergenic	-1068345	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
19-PTNLD28-TUMOR_peak_33853	chr15	62267077	62267266	+	7.82273	NA	intron (NM_001018088, intron 24 of 81)	intron (NM_001018088, intron 24 of 81)	85493	NM_017684	54832	Hs.511668	NM_017684	HPRD:12323	VPS13C	-	vacuolar protein sorting 13 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_105723	chr9	119622959	119623047	+	7.82273	NA	intron (NM_014010, intron 10 of 21)	MIRc|SINE|MIR	173422	NM_012210	22954	Hs.591910	NM_012210	HPRD:03797	TRIM32	BBS11|HT2A|LGMD2H|TATIP	tripartite motif containing 32	protein-coding
19-PTNLD28-TUMOR_peak_69876	chr3	113191152	113191249	+	7.82273	NA	intron (NM_144718, intron 7 of 17)	L1PA3|LINE|L1	-30839	NM_018338	55779	Hs.584936	NM_018338	HPRD:07734	CFAP44	WDR52	cilia and flagella associated protein 44	protein-coding
19-PTNLD28-TUMOR_peak_94663	chr7	105113792	105113893	+	7.82273	NA	intron (NM_019042, intron 9 of 15)	AluSx|SINE|Alu	48843	NM_019042	54517	Hs.520619	NM_019042	HPRD:07914	PUS7	-	pseudouridylate synthase 7 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_35356	chr15	96289121	96289224	+	7.82273	NA	Intergenic	U2|snRNA|snRNA	312850	NR_027133	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
19-PTNLD28-TUMOR_peak_30111	chr14	47514191	47514279	+	7.82273	NA	intron (NM_001113498, intron 7 of 16)	intron (NM_001113498, intron 7 of 16)	298214	NM_182830	161357	Hs.436380	NM_182830	HPRD:14352	MDGA2	MAMDC1|c14_5286	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
19-PTNLD28-TUMOR_peak_55619	chr2	129455738	129455826	+	7.82273	NA	Intergenic	AluSx|SINE|Alu	-166392	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_57612	chr2	197053968	197054067	+	7.82273	NA	Intergenic	Intergenic	-17681	NM_004226	9262	Hs.88297	NM_004226	HPRD:05289	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
19-PTNLD28-TUMOR_peak_69167	chr3	77047859	77047975	+	7.82273	NA	Intergenic	Intergenic	-41377	NM_001290039	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout, axon guidance receptor, homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_97255	chr8	12698308	12698409	+	7.82273	NA	Intergenic	Intergenic	-29448	NR_015383	340357	Hs.434302	NR_015383	ENSG00000254813	LOC340357	-	uncharacterized LOC340357	ncRNA
19-PTNLD28-TUMOR_peak_59412	chr20	937234	937340	+	7.82273	NA	Intergenic	Intergenic	-40327	NM_015985	51378	Hs.278973	NM_015985	HPRD:04747	ANGPT4	AGP4|ANG-3|ANG4	angiopoietin 4	protein-coding
19-PTNLD28-TUMOR_peak_30857	chr14	66962337	66962459	+	7.82273	NA	intron (NR_024338, intron 8 of 10)	intron (NR_024338, intron 8 of 10)	9309	NR_110307	440184	Hs.412138	NM_001004331	HPRD:14708	LINC00238	C14orf53|NCRNA00238	long intergenic non-protein coding RNA 238	ncRNA
19-PTNLD28-TUMOR_peak_14336	chr10	75516545	75516668	+	7.82273	NA	intron (NM_004922, intron 4 of 23)	AluSq2|SINE|Alu	12475	NM_004922	9632	Hs.81964	NM_004922	HPRD:06217	SEC24C	-	SEC24 family member C	protein-coding
19-PTNLD28-TUMOR_peak_44667	chr18	12657603	12657713	+	7.82273	NA	promoter-TSS (NM_001128627)	promoter-TSS (NM_001128627)	254	NM_020148	56907	Hs.515283	NM_020148	HPRD:11600	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_46025	chr18	57628284	57628634	+	7.82273	NA	Intergenic	Intergenic	61267	NM_021127	5366	Hs.96	NM_021127	HPRD:12002	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51375	chr2	18569092	18569193	+	7.82273	NA	Intergenic	Intergenic	172817	NM_020905	57665	Hs.120319	NM_020905	HPRD:10190	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_99657	chr8	99182373	99182475	+	7.82273	NA	Intergenic	Intergenic	52356	NM_015029	10940	Hs.252828	NM_015029	HPRD:03923	POP1	-	processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_57038	chr2	174837407	174837660	+	7.82273	NA	Intergenic	Intergenic	-7103	NM_003111	6670	Hs.531587	NM_003111	HPRD:03483	SP3	SPR2	Sp3 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_50231	chr19	54250419	54250580	+	7.82273	NA	Intergenic	AluY|SINE|Alu	-1391	NR_030216	574494		NR_030216	miRBase:MI0003176	MIR521-1	MIRN521-1	microRNA 521-1	ncRNA
19-PTNLD28-TUMOR_peak_36902	chr16	24386120	24386208	+	7.82273	NA	Intergenic	LTR13|LTR|ERVK	119290	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_8142	chr1	170899058	170899149	+	7.82273	NA	Intergenic	Intergenic	-5509	NM_001163629	80133	Hs.591489	NM_025063	HPRD:08672	MROH9	ARMC11|C1orf129	maestro heat-like repeat family member 9	protein-coding
19-PTNLD28-TUMOR_peak_9943	chr1	211828657	211828782	+	7.82273	NA	Intergenic	Intergenic	20253	NM_002497	4751	Hs.153704	NM_002497	HPRD:04953	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA-related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_108321	chrX	50191666	50191755	+	7.82273	NA	intron (NM_001013742, intron 1 of 27)	intron (NM_001013742, intron 1 of 27)	22027	NM_001013742	139189	Hs.38132	NM_001013742		DGKK	-	diacylglycerol kinase, kappa	protein-coding
19-PTNLD28-TUMOR_peak_10280	chr1	223418186	223418342	+	7.82273	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	-101640	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_54791	chr2	109858032	109858140	+	7.82273	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	71995	NR_036224	100423027		NR_036224	miRBase:MI0015870	MIR4266	-	microRNA 4266	ncRNA
19-PTNLD28-TUMOR_peak_28458	chr13	73762335	73762426	+	7.82273	NA	Intergenic	Intergenic	129450	NM_001730	688	Hs.508234	NM_001730	HPRD:04212	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_88281	chr6	73174892	73175002	+	7.82273	NA	Intergenic	Intergenic	98515	NM_001168411	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_65941	chr22	46105848	46105988	+	7.82273	NA	intron (NM_013236, intron 5 of 11)	L2a|LINE|L2	38240	NM_013236	25814	Hs.475125	NM_013236	HPRD:04624	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding
19-PTNLD28-TUMOR_peak_81703	chr5	116157251	116157341	+	7.82273	NA	Intergenic	LTR5_Hs|LTR|ERVK	-59391	NR_104678	102467223	Hs.570916	NR_104678		LOC102467223	-	uncharacterized LOC102467223	ncRNA
19-PTNLD28-TUMOR_peak_9064	chr1	197808091	197808245	+	7.82273	NA	Intergenic	Intergenic	-63514	NM_001024594	388722	Hs.61329	NM_001024594	HPRD:18611	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_27230	chr12	131924898	131925276	+	7.82273	NA	Intergenic	L1ME5|LINE|L1	93072	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_77878	chr4	161050719	161050932	+	7.82273	NA	Intergenic	MER77|LTR|ERVL	861827	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_2129	chr1	32780317	32780405	+	7.82273	NA	intron (NM_004964, intron 2 of 13)	AluY|SINE|Alu	21479	NM_023009	65108	Hs.75061	NM_023009	HPRD:04247	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS-like 1	protein-coding
19-PTNLD28-TUMOR_peak_105276	chr9	111576369	111576479	+	7.82273	NA	Intergenic	Intergenic	41851	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_68722	chr3	63314044	63314317	+	7.82273	NA	intron (NM_001130003, intron 2 of 5)	intron (NM_001130003, intron 2 of 5)	50266	NM_001130003	132204	Hs.648668	NM_144642	HPRD:15458	SYNPR	SPO	synaptoporin	protein-coding
19-PTNLD28-TUMOR_peak_46174	chr18	65450957	65451058	+	7.82273	NA	intron (NR_033921, intron 1 of 4)	intron (NR_033921, intron 1 of 4)	-267040	NM_032160	92126	Hs.124673	NM_032160	HPRD:10720	DSEL	C18orf4	dermatan sulfate epimerase-like	protein-coding
19-PTNLD28-TUMOR_peak_98918	chr8	59442480	59442647	+	7.82273	NA	Intergenic	HERVL32-int|LTR|ERVL	-23165	NM_001007069	6386	Hs.200804	NM_005625	HPRD:03741	SDCBP	MDA-9|ST1|SYCL|TACIP18	syndecan binding protein (syntenin)	protein-coding
19-PTNLD28-TUMOR_peak_98147	chr8	36716539	36716637	+	7.82273	NA	intron (NM_001031836, intron 18 of 26)	intron (NM_001031836, intron 18 of 26)	74746	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_87837	chr6	47025735	47025877	+	7.82273	NA	Intergenic	Intergenic	-15724	NM_153840	266977	Hs.733762	NM_025048	HPRD:08661	GPR110	KPG_012|PGR19|hGPCR36	G protein-coupled receptor 110	protein-coding
19-PTNLD28-TUMOR_peak_5994	chr1	120491374	120491488	+	7.82273	NA	intron (NM_024408, intron 16 of 33)	intron (NM_024408, intron 16 of 33)	-52284	NM_021794	11085	Hs.283011	NM_021794	HPRD:05307	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
19-PTNLD28-TUMOR_peak_16340	chr10	134320312	134320405	+	7.82273	NA	Intergenic	Intergenic	-30995	NM_005539	3632	Hs.523360	NM_005539	HPRD:02521	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_27072	chr12	126518385	126518639	+	7.82273	NA	Intergenic	LTR22A|LTR|ERVK	-50592	NR_034132	400084	Hs.156191	NR_034132	ENSG00000249267	LINC00939	-	long intergenic non-protein coding RNA 939	ncRNA
19-PTNLD28-TUMOR_peak_26099	chr12	108125229	108125475	+	7.82273	NA	Intergenic	Intergenic	-4980	NR_120474	101929162	Hs.667028	NR_120474	ENSG00000258136	LOC101929162	-	uncharacterized LOC101929162	ncRNA
19-PTNLD28-TUMOR_peak_77316	chr4	141967447	141967604	+	7.82273	NA	intron (NM_020724, intron 1 of 6)	intron (NM_020724, intron 1 of 6)	87091	NM_020724	57484	Hs.659104	NM_020724	HPRD:15258	RNF150	-	ring finger protein 150	protein-coding
19-PTNLD28-TUMOR_peak_31987	chr14	99701271	99701429	+	7.82273	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	36700	NM_022898	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_83960	chr5	171889274	171889365	+	7.82273	NA	Intergenic	Intergenic	-7792	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_88228	chr6	70823069	70823327	+	7.82273	NA	intron (NM_001858, intron 16 of 50)	intron (NM_001858, intron 16 of 50)	169713	NM_078485	1297	Hs.590892	NM_001851	HPRD:00367	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen, type IX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_36773	chr16	22110435	22110549	+	7.82273	NA	intron (NM_173615, intron 3 of 33)	intron (NM_173615, intron 3 of 33)	6633	NM_173615	146177	Hs.10697	NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_95469	chr7	133621017	133621140	+	7.82273	NA	intron (NM_021807, intron 13 of 17)	intron (NM_021807, intron 13 of 17)	-111437	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
19-PTNLD28-TUMOR_peak_109027	chrX	103100157	103100255	+	7.82273	NA	Intergenic	Intergenic	-12994	NM_016370	51209	Hs.522736	NM_016370	HPRD:02237	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_88162	chr6	58020754	58020848	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	266923	NR_125729	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	glucuronidase, beta pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_93967	chr7	93251869	93251957	+	7.82273	NA	Intergenic	Intergenic	-47871	NM_001164737	799	Hs.489127	NM_001742	HPRD:00239	CALCR	CRT|CT-R|CTR|CTR1	calcitonin receptor	protein-coding
19-PTNLD28-TUMOR_peak_21860	chr11	124663520	124663802	+	7.82273	NA	intron (NM_001301087, intron 1 of 4)	intron (NM_001301087, intron 1 of 4)	6638	NM_001301087	79684	Hs.146079	NM_024631	HPRD:08024	MSANTD2	C11orf61	Myb/SANT-like DNA-binding domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_74552	chr4	13076738	13076988	+	7.82273	NA	Intergenic	AluY|SINE|Alu	409126	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_35513	chr15	101413321	101413461	+	7.82273	NA	Intergenic	MamRep1161|DNA|TcMar	-6506	NM_000693	220	Hs.459538	NM_000693	HPRD:02713	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_4272	chr1	68672937	68673033	+	7.82273	NA	intron (NM_024911, intron 1 of 11)	intron (NM_024911, intron 1 of 11)	-23692	NR_031664	100302279		NR_031664		MIR1262	MIRN1262|hsa-mir-1262	microRNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_76315	chr4	95966646	95966895	+	7.82273	NA	intron (NM_001256792, intron 1 of 10)	L2c|LINE|L2	-6060	NM_001256793	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_32207	chr14	103759268	103759356	+	7.82273	NA	Intergenic	Intergenic	-41027	NM_001969	1983	Hs.433702	NM_001969	HPRD:03417	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
19-PTNLD28-TUMOR_peak_92051	chr7	37221690	37221828	+	7.82273	NA	intron (NM_001206480, intron 13 of 21)	intron (NM_001206480, intron 13 of 21)	171513	NM_001206482	9844	Hs.434989	NM_014800	HPRD:12102	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
19-PTNLD28-TUMOR_peak_78460	chr4	188929597	188929752	+	7.82273	NA	Intergenic	L1MA9|LINE|L1	12749	NM_174900	132625	Hs.335787	NM_174900	HPRD:15726	ZFP42	REX1|ZNF754	ZFP42 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_28768	chr13	98312957	98313167	+	7.82273	NA	Intergenic	Intergenic	226587	NM_021033	5911	Hs.508480	NM_021033		RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_75519	chr4	62399000	62399107	+	7.82273	NA	intron (NM_015236, intron 1 of 22)	intron (NM_015236, intron 1 of 22)	36214	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_15504	chr10	106342458	106342588	+	7.82273	NA	Intergenic	Intergenic	-58336	NM_014978	22986	Hs.671950	NM_014978	HPRD:12100	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_63102	chr21	31781143	31781487	+	7.82273	NA	Intergenic	L1PA16|LINE|L1	12923	NM_181599	140258	Hs.407653	NM_181599	HPRD:10570	KRTAP13-1	KAP13.1|KRTAP13.1	keratin associated protein 13-1	protein-coding
19-PTNLD28-TUMOR_peak_105181	chr9	109991555	109991695	+	7.82273	NA	Intergenic	Intergenic	-53892	NM_002874	5887	Hs.521640	NM_002874	HPRD:06772	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_27697	chr13	31191175	31191349	+	7.82273	NA	promoter-TSS (NM_005800)	promoter-TSS (NM_005800)	-568	NM_005800	10208	Hs.533831	NM_005800	HPRD:09833	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
19-PTNLD28-TUMOR_peak_23569	chr12	29395037	29395429	+	7.82273	NA	intron (NM_001271784, intron 1 of 10)	intron (NM_001271784, intron 1 of 10)	18677	NM_018099	55711	Hs.728955	NM_018099	HPRD:14723	FAR2	MLSTD1|SDR10E2	fatty acyl CoA reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_81764	chr5	120587706	120587966	+	7.82273	NA	Intergenic	Intergenic	-70409	NR_104999	102467226		NR_104999		LOC102467226	-	uncharacterized LOC102467226	ncRNA
19-PTNLD28-TUMOR_peak_63738	chr21	43565751	43565846	+	7.82273	NA	Intergenic	Intergenic	-37154	NR_027243	150147	Hs.558646	NM_152507	HPRD:10740	C21orf128	-	chromosome 21 open reading frame 128	ncRNA
19-PTNLD28-TUMOR_peak_75861	chr4	79070982	79071208	+	7.82273	NA	intron (NM_001166133, intron 2 of 41)	intron (NM_001166133, intron 2 of 41)	92371	NM_001166133	80144	Hs.369448	NM_020875	HPRD:06382	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_76636	chr4	112816035	112816149	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-250461	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_108448	chrX	55935496	55935654	+	7.82273	NA	Intergenic	Intergenic	191465	NM_006064	10325	Hs.50282	NM_006064	HPRD:06710	RRAGB	RAGB|bA465E19.1	Ras-related GTP binding B	protein-coding
19-PTNLD28-TUMOR_peak_62300	chr20	56168290	56168439	+	7.82273	NA	Intergenic	Intergenic	27268	NM_001160419	81030	Hs.302123	NM_030776	HPRD:09484	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_28837	chr13	100105293	100105446	+	7.82273	NA	Intergenic	Intergenic	46191	NR_110731	102725509	Hs.648968	NR_110731		LINC01232	-	long intergenic non-protein coding RNA 1232	ncRNA
19-PTNLD28-TUMOR_peak_25338	chr12	74654073	74654195	+	7.82273	NA	intron (NR_038300, intron 3 of 6)	MER11D|LTR|ERVK	32277	NR_038300	100507377	Hs.738728	NR_038300	ENSG00000251138	LOC100507377	-	uncharacterized LOC100507377	ncRNA
19-PTNLD28-TUMOR_peak_82863	chr5	142388725	142388921	+	7.82273	NA	intron (NM_015071, intron 11 of 22)	intron (NM_015071, intron 11 of 22)	-140348	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89310	chr6	122115939	122116033	+	7.82273	NA	Intergenic	Intergenic	359263	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_67439	chr3	32944243	32944386	+	7.82273	NA	Intergenic	LTR12C|LTR|ERV1	-48752	NM_005508	1233	Hs.184926	NM_005508		CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	chemokine (C-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_83307	chr5	151456845	151456940	+	7.82273	NA	intron (NR_109876, intron 1 of 2)	L1HS|LINE|L1	118433	NR_109876	101927115	Hs.549665	NR_109876	ENSG00000254226	CTB-12O2.1	-	uncharacterized LOC101927115	ncRNA
19-PTNLD28-TUMOR_peak_17627	chr11	20376932	20377022	+	7.82273	NA	Intergenic	Intergenic	-8254	NM_006410	10553	Hs.90753	NM_006410	HPRD:09288	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_90048	chr6	151530606	151530702	+	7.82273	NA	Intergenic	Intergenic	-30480	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_41182	chr17	35930762	35930867	+	7.82273	NA	exon (NM_001163544, exon 9 of 21)	exon (NM_001163544, exon 9 of 21)	38672	NM_198882	11276	Hs.594647	NM_007247	HPRD:06291	SYNRG	AP1GBP1|SYNG	synergin, gamma	protein-coding
19-PTNLD28-TUMOR_peak_62772	chr21	14683663	14683777	+	7.82273	NA	Intergenic	Intergenic	95061	NR_036164	100423018		NR_036164	miRBase:MI0014242	MIR3156-3	-	microRNA 3156-3	ncRNA
19-PTNLD28-TUMOR_peak_11350	chr1	243507429	243507532	+	7.82273	NA	intron (NM_006642, intron 11 of 17)	intron (NM_006642, intron 11 of 17)	-1998	NR_039824	100616343		NR_039824		MIR4677	-	microRNA 4677	ncRNA
19-PTNLD28-TUMOR_peak_12070	chr10	12877871	12878019	+	7.82273	NA	TTS (NR_027322)	TTS (NR_027322)	2812	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	ncRNA
19-PTNLD28-TUMOR_peak_28721	chr13	95976526	95976629	+	7.82273	NA	Intergenic	Intergenic	-22890	NM_005845	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_20733	chr11	95936849	95936990	+	7.82273	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-137683	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_88420	chr6	77586108	77586240	+	7.82273	NA	Intergenic	L1HS|LINE|L1	586946	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_98951	chr8	61393599	61393756	+	7.82273	NA	Intergenic	Intergenic	-35792	NM_002865	5862	Hs.369017	NM_002865	HPRD:01539	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_30106	chr14	46635927	46636024	+	7.82273	NA	intron (NR_102701, intron 1 of 5)	L1PA4|LINE|L1	102613	NR_102702	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
19-PTNLD28-TUMOR_peak_69474	chr3	101587732	101587862	+	7.82273	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	19439	NM_031419	64332	Hs.319171	NM_031419	HPRD:09217	NFKBIZ	IKBZ|INAP|MAIL	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	protein-coding
19-PTNLD28-TUMOR_peak_99132	chr8	70566218	70566397	+	7.82273	NA	intron (NM_015170, intron 22 of 22)	MER21-int|LTR|ERVL	161279	NM_001128205	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_18590	chr11	55227505	55227668	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	92226	NM_001005275	81328	Hs.554529	NM_001005275	HPRD:14958	OR4A15	OR11-118	olfactory receptor, family 4, subfamily A, member 15	protein-coding
19-PTNLD28-TUMOR_peak_37690	chr16	48721472	48721597	+	7.82273	NA	Intergenic	Intergenic	-77414	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_15705	chr10	114859402	114859645	+	7.82273	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	149514	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_83532	chr5	158128595	158128695	+	7.82273	NA	intron (NM_182708, intron 14 of 14)	Charlie8|DNA|hAT-Charlie	-291864	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_9019	chr1	195066626	195066779	+	7.82273	NA	Intergenic	MER52A|LTR|ERV1	1484909	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_45390	chr18	41176181	41176344	+	7.82273	NA	Intergenic	Intergenic	-318647	NM_020783	6860	Hs.8059	NM_020783	HPRD:02519	SYT4	HsT1192	synaptotagmin IV	protein-coding
19-PTNLD28-TUMOR_peak_30034	chr14	41945928	41946022	+	7.82273	NA	Intergenic	MLT2B4|LTR|ERVL	-130789	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_82487	chr5	138257268	138257442	+	7.82273	NA	intron (NM_001290309, intron 10 of 16)	AluSc|SINE|Alu	-46298	NM_015564	26045	Hs.656653	NM_015564	HPRD:17454	LRRTM2	-	leucine rich repeat transmembrane neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_35266	chr15	92238209	92238316	+	7.82273	NA	Intergenic	Intergenic	-158676	NM_001145044	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_23974	chr12	47068748	47068883	+	7.82273	NA	Intergenic	Intergenic	150965	NM_001143824	55089	Hs.446077	NM_018018	HPRD:12159	SLC38A4	ATA3|NAT3|PAAT	solute carrier family 38, member 4	protein-coding
19-PTNLD28-TUMOR_peak_40972	chr17	30580199	30580302	+	7.82273	NA	Intergenic	Intergenic	-12945	NM_138328	162494	Hs.655027	NM_138328	HPRD:07501	RHBDL3	RHBDL4|VRHO	rhomboid, veinlet-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_25324	chr12	72690285	72690425	+	7.82273	NA	intron (NM_013381, intron 2 of 18)	intron (NM_013381, intron 2 of 18)	-23066	NR_026836	283392	Hs.363603	NM_001025457	HPRD:18764	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89324	chr6	123905297	123905391	+	7.82273	NA	intron (NM_001256021, intron 1 of 7)	HERVH-int|LTR|ERV1	52894	NM_001256020	10345	Hs.144744	NM_006073	HPRD:04474	TRDN	CPVT5|TDN|TRISK	triadin	protein-coding
19-PTNLD28-TUMOR_peak_109628	chrX	139139237	139139372	+	7.82273	NA	Intergenic	Intergenic	-34522	NM_001271560	389895	Hs.127679	NM_001271560		LOC389895	-	chromosome 16 open reading frame 72-like	protein-coding
19-PTNLD28-TUMOR_peak_4519	chr1	82643003	82643128	+	7.82273	NA	Intergenic	Intergenic	376983	NM_012302	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_45915	chr18	55735018	55735123	+	7.82273	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	20612	NM_001144964	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_35360	chr15	96662094	96662246	+	7.82273	NA	Intergenic	Intergenic	-206987	NM_001145155	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_91882	chr7	31232696	31232917	+	7.82273	NA	Intergenic	CpG	140730	NM_001199636	117	Hs.377783	NM_001118	HPRD:00045	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I	protein-coding
19-PTNLD28-TUMOR_peak_74994	chr4	39248472	39248560	+	7.82273	NA	intron (NM_025132, intron 24 of 36)	L1PA4|LINE|L1	64492	NM_025132	57728	Hs.438482	NM_025132	HPRD:10489	WDR19	ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5	WD repeat domain 19	protein-coding
19-PTNLD28-TUMOR_peak_27807	chr13	34630895	34630994	+	7.82273	NA	Intergenic	MER34A1|LTR|ERV1	238738	NM_181558	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_57310	chr2	182895398	182895551	+	7.82273	NA	intron (NM_001080545, intron 2 of 4)	L1PA2|LINE|L1	44923	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding
19-PTNLD28-TUMOR_peak_28939	chr13	106118972	106119060	+	7.82273	NA	intron (NR_040247, intron 4 of 6)	intron (NR_040247, intron 4 of 6)	451	NM_001161812	267012	Hs.381382	NM_172370	HPRD:07591	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
19-PTNLD28-TUMOR_peak_59006	chr2	236311112	236311320	+	7.82273	NA	Intergenic	Intergenic	-91517	NM_001037131	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_40998	chr17	31325475	31325765	+	7.82273	NA	TTS (NM_173847)	TTS (NM_173847)	6738	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_16845	chr11	5944384	5944483	+	7.82273	NA	Intergenic	L1M1|LINE|L1	-24144	NM_001003443	390083	Hs.553741	NM_001003443	HPRD:17747	OR56A3	OR56A2P|OR56A3P|OR56A6	olfactory receptor, family 56, subfamily A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_109676	chrX	143285957	143286133	+	7.82273	NA	Intergenic	LTR4|LTR|ERV1	318872	NR_121210	389898	Hs.585177	NM_001012989	HPRD:18504	UBE2NL	Li174	ubiquitin-conjugating enzyme E2N-like	protein-coding
19-PTNLD28-TUMOR_peak_24284	chr12	52374178	52374328	+	7.82273	NA	intron (NM_020327, intron 3 of 8)	intron (NM_020327, intron 3 of 8)	-26476	NM_181711	160622	Hs.407202	NM_181711	HPRD:17077	GRASP	TAMALIN	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
19-PTNLD28-TUMOR_peak_11879	chr10	6417027	6417292	+	7.82273	NA	Intergenic	L1HS|LINE|L1	48652	NR_040079	399715		NR_040079	ENSG00000215244	LOC399715	-	uncharacterized LOC399715	ncRNA
19-PTNLD28-TUMOR_peak_88592	chr6	86017247	86017335	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-142011	NM_001204813	4907	Hs.153952	NM_002526	HPRD:00552	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase, ecto (CD73)	protein-coding
19-PTNLD28-TUMOR_peak_28555	chr13	78128356	78128494	+	7.82273	NA	intron (NM_144777, intron 1 of 32)	LTR16A1|LTR|ERVL	18616	NM_001160706	8796	Hs.534699	NM_003843	HPRD:09161	SCEL	-	sciellin	protein-coding
19-PTNLD28-TUMOR_peak_42741	chr17	59914726	59914815	+	7.82273	NA	intron (NM_032043, intron 6 of 19)	intron (NM_032043, intron 6 of 19)	26150	NM_032043	83990	Hs.128903	NM_032043		BRIP1	BACH1|FANCJ|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding
19-PTNLD28-TUMOR_peak_81794	chr5	122063059	122063233	+	7.82273	NA	intron (NR_109881, intron 2 of 11)	MIRb|SINE|MIR	3109	NR_109881	101927379	Hs.536399	NR_109881	ENSG00000251538	LOC101927379	-	uncharacterized LOC101927379	ncRNA
19-PTNLD28-TUMOR_peak_109253	chrX	116867132	116867223	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	240524	NM_033495	90293	Hs.348262	NM_033495	HPRD:06461	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
19-PTNLD28-TUMOR_peak_76395	chr4	101210796	101210928	+	7.82273	NA	Intergenic	Intergenic	-99207	NM_145244	115265	Hs.480378	NM_145244	HPRD:09663	DDIT4L	REDD2|Rtp801L	DNA-damage-inducible transcript 4-like	protein-coding
19-PTNLD28-TUMOR_peak_74757	chr4	23790323	23790411	+	7.82273	NA	Intergenic	Intergenic	101333	NM_013261	10891	Hs.527078	NM_013261	HPRD:05155	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_100841	chr8	128929905	128930019	+	7.82273	NA	intron (NR_003367, intron 1 of 7)	intron (NR_003367, intron 1 of 7)	27088	NR_003367	5820	Hs.133107	NR_003367	ENSG00000249859	PVT1	LINC00079|NCRNA00079	Pvt1 oncogene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_22643	chr12	5265457	5265601	+	7.82273	NA	Intergenic	Intergenic	83749	NR_120476	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA
19-PTNLD28-TUMOR_peak_88614	chr6	86372106	86372281	+	7.82273	NA	Intergenic	L1MA5A|LINE|L1	14893	NR_002743	26799		NR_002743	ENSG00000203875	SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
19-PTNLD28-TUMOR_peak_107805	chrX	23382698	23382840	+	7.82273	NA	intron (NM_173495, intron 1 of 2)	intron (NM_173495, intron 1 of 2)	29784	NM_173495	139411	Hs.319503	NM_173495		PTCHD1	-	patched domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_50894	chr2	7825870	7826031	+	7.82273	NA	Intergenic	Intergenic	213836	NR_110256	101929551	Hs.116006	NR_110256		LOC101929551	-	uncharacterized LOC101929551	ncRNA
19-PTNLD28-TUMOR_peak_45014	chr18	24393146	24393261	+	7.82273	NA	Intergenic	Intergenic	49372	NM_004028	361	Hs.315369	NM_001650	HPRD:02631	AQP4	HMIWC2|MIWC	aquaporin 4	protein-coding
19-PTNLD28-TUMOR_peak_56752	chr2	165683170	165683261	+	7.82273	NA	intron (NM_001278458, intron 2 of 16)	intron (NM_001278458, intron 2 of 16)	-14044	NR_110574	101929633	Hs.570267	NR_110574		LOC101929633	-	uncharacterized LOC101929633	ncRNA
19-PTNLD28-TUMOR_peak_67265	chr3	27174613	27174797	+	7.82273	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	236207	NM_199347	152110	Hs.506115	NM_152534	HPRD:08135	NEK10	-	NIMA-related kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_57414	chr2	190075000	190075265	+	7.82273	NA	Intergenic	Intergenic	-30527	NM_000393	1290	Hs.445827	NM_000393	HPRD:00366	COL5A2	-	collagen, type V, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_62354	chr20	56995942	56996050	+	7.82273	NA	intron (NM_001195677, intron 2 of 2)	intron (NM_001195677, intron 2 of 2)	31821	NR_036633	9217	Hs.182625	NM_004738	HPRD:09300	VAPB	ALS8|VAMP-B|VAP-B	VAMP (vesicle-associated membrane protein)-associated protein B and C	protein-coding
19-PTNLD28-TUMOR_peak_57096	chr2	176231624	176231722	+	7.82273	NA	Intergenic	Intergenic	-185183	NM_001190329	518	Hs.429	NM_001689		ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_60129	chr20	21154257	21154356	+	7.82273	NA	intron (NM_018474, intron 6 of 12)	L2a|LINE|L2	44621	NR_109956	101929591	Hs.656066	NR_109956	ENSG00000232712	KIZ-AS1	-	KIZ antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98086	chr8	32290502	32290676	+	7.82273	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	-7673	NR_047475	100874286	Hs.147060	NR_047475		NRG1-IT3	-	NRG1 intronic transcript 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_108045	chrX	42145714	42145838	+	7.82273	NA	Intergenic	SVA_D|Other|Other	-363489	NM_001126054	8573	Hs.495984	NM_003688	HPRD:02164	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
19-PTNLD28-TUMOR_peak_47539	chr19	13781708	13781923	+	7.82273	NA	Intergenic	MER58A|DNA|hAT-Charlie	-76938	NM_030818	81576	Hs.24998	NM_030818	HPRD:11304	CCDC130	-	coiled-coil domain containing 130	protein-coding
19-PTNLD28-TUMOR_peak_106408	chr9	132758026	132758195	+	7.82273	NA	intron (NM_015033, intron 1 of 16)	intron (NM_015033, intron 1 of 16)	47363	NM_015033	23048	Hs.189409	NM_015033	HPRD:10446	FNBP1	FBP17	formin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_17958	chr11	34035575	34035729	+	7.82273	NA	Intergenic	Intergenic	-37578	NM_005898	4076	Hs.471818	NM_005898	HPRD:03108	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68174	chr3	49987836	49987925	+	7.82273	NA	intron (NM_005777, intron 1 of 20)	SSU-rRNA_Hsa|rRNA|rRNA	10403	NM_001167582	10180	Hs.696735	NM_005777	HPRD:06054	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
19-PTNLD28-TUMOR_peak_59673	chr20	5669286	5669429	+	7.82273	NA	Intergenic	LTR16C|LTR|ERVL	-61686	NM_152504	149840	Hs.529340	NM_152504	HPRD:08681	C20orf196	-	chromosome 20 open reading frame 196	protein-coding
19-PTNLD28-TUMOR_peak_39791	chr17	4297616	4297708	+	7.82273	NA	Intergenic	Intergenic	-27693	NM_003342	7326	Hs.741319	NM_003342	HPRD:03340	UBE2G1	E217K|UBC7|UBE2G	ubiquitin-conjugating enzyme E2G 1	protein-coding
19-PTNLD28-TUMOR_peak_23244	chr12	15347033	15347128	+	7.82273	NA	intron (NM_032918, intron 2 of 4)	intron (NM_032918, intron 2 of 4)	27331	NM_032918	85004	Hs.199487	NM_032918	HPRD:15238	RERG	-	RAS-like, estrogen-regulated, growth inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_79691	chr5	42772554	42772707	+	7.82273	NA	intron (NM_001134848, intron 4 of 8)	AluSc5|SINE|Alu	15710	NM_001134848	100129792	Hs.745017	NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
19-PTNLD28-TUMOR_peak_29965	chr14	37612081	37612302	+	7.82273	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	-29040	NR_033240	100129794	Hs.601579	NR_033240	ENSG00000258708	SLC25A21-AS1	-	SLC25A21 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76204	chr4	89026164	89026310	+	7.82273	NA	intron (NM_001257386, intron 10 of 15)	intron (NM_001257386, intron 10 of 15)	53774	NM_004827	9429	Hs.480218	NM_004827	HPRD:04783	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding
19-PTNLD28-TUMOR_peak_64991	chr22	29641631	29641755	+	7.82273	NA	intron (NM_001267895, intron 13 of 14)	intron (NM_001267895, intron 13 of 14)	22221	NM_012265	25807	Hs.106730	NM_012265	HPRD:12800	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_79083	chr5	16037239	16037478	+	7.82273	NA	Intergenic	Intergenic	142539	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_23268	chr12	16115891	16115982	+	7.82273	NA	intron (NM_001300779, intron 5 of 7)	intron (NM_001300779, intron 5 of 7)	51830	NM_015954	51071	Hs.39429	NM_015954	HPRD:13138	DERA	DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_29939	chr14	36560389	36560487	+	7.82273	NA	intron (NR_073454, intron 1 of 2)	MLT1J|LTR|ERVL-MaLR	20805	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_8907	chr1	186504968	186505056	+	7.82273	NA	Intergenic	Intergenic	-58357	NR_031642	100302192		NR_031642		MIR548F1	MIR548F-1|MIRN548F1|hsa-mir-548f-1	microRNA 548f-1	ncRNA
19-PTNLD28-TUMOR_peak_107859	chrX	27618958	27619087	+	7.82273	NA	Intergenic	Intergenic	-137564	NR_002784	139420	Hs.350673	NR_002784		SMEK3P	FLFL3P|smk1	SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15538	chr10	108412141	108412240	+	7.82273	NA	exon (NM_052918, exon 18 of 26)	exon (NM_052918, exon 18 of 26)	512276	NM_001206572	114815	Hs.591915	NM_052918	HPRD:12098	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_92340	chr7	45088519	45088670	+	7.82273	NA	intron (NM_001029835, intron 2 of 9)	AluJo|SINE|Alu	21361	NM_001029835	83605	Hs.148272	NM_031443	HPRD:09719	CCM2	C7orf22|OSM	cerebral cavernous malformation 2	protein-coding
19-PTNLD28-TUMOR_peak_71002	chr3	134309718	134309897	+	7.82273	NA	Intergenic	HAL1|LINE|L1	60057	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_33726	chr15	58559317	58559634	+	7.82273	NA	Intergenic	Intergenic	129067	NM_020980	366	Hs.104624	NM_020980	HPRD:04223	AQP9	AQP-9|HsT17287|SSC1	aquaporin 9	protein-coding
19-PTNLD28-TUMOR_peak_47977	chr19	18000508	18000634	+	7.82273	NA	intron (NM_000453, intron 13 of 14)	intron (NM_000453, intron 13 of 14)	17789	NM_000453	6528	Hs.584804	NM_000453	HPRD:03504	SLC5A5	NIS|TDH1	solute carrier family 5 (sodium/iodide cotransporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_100055	chr8	108793875	108794007	+	7.82273	NA	Intergenic	Intergenic	-283687	NM_001199859	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_44055	chr17	80091605	80091700	+	7.82273	NA	intron (NM_198082, intron 14 of 16)	AluSx|SINE|Alu	-35546	NM_004104	2194	Hs.83190	NM_004104	HPRD:02567	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
19-PTNLD28-TUMOR_peak_22542	chr12	3351440	3351563	+	7.82273	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	-139014	NM_001256536	56341	Hs.504530	NM_019854	HPRD:11029	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_67400	chr3	32087189	32087299	+	7.82273	NA	Intergenic	Intergenic	-60759	NM_015141	23171	Hs.82432	NM_015141	HPRD:10008	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1-like	protein-coding
19-PTNLD28-TUMOR_peak_75546	chr4	66159427	66159575	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	-289283	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
19-PTNLD28-TUMOR_peak_75358	chr4	55391801	55392153	+	7.82273	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-132118	NM_000222	3815	Hs.479754	NM_000222	HPRD:01287	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_40268	chr17	14641563	14641857	+	7.82273	NA	Intergenic	Intergenic	-292582	NR_033371	94150	Hs.147654	NR_033371	ENSG00000259944	CDRT7	LINC00025|NCRNA00025	CMT1A duplicated region transcript 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_51453	chr2	20543050	20543138	+	7.82273	NA	intron (NM_015317, intron 1 of 20)	AluJb|SINE|Alu	7517	NM_001282752	23369	Hs.467824	NM_015317	HPRD:09527	PUM2	PUMH2|PUML2	pumilio RNA-binding family member 2	protein-coding
19-PTNLD28-TUMOR_peak_73154	chr3	189699455	189699636	+	7.82273	NA	intron (NM_001134418, intron 8 of 14)	intron (NM_001134418, intron 8 of 14)	139363	NM_018192	55214	Hs.374191	NM_018192	HPRD:17270	LEPREL1	MCVD|MLAT4|P3H2	leprecan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_30033	chr14	41918361	41918570	+	7.82273	NA	Intergenic	L1MEg|LINE|L1	-158299	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_99274	chr8	79357548	79357697	+	7.82273	NA	Intergenic	L1PA5|LINE|L1	-70714	NM_181839	5569	Hs.433700	NM_006823	HPRD:05828	PKIA	PRKACN1	protein kinase (cAMP-dependent, catalytic) inhibitor alpha	protein-coding
19-PTNLD28-TUMOR_peak_76965	chr4	125125169	125125257	+	7.82273	NA	Intergenic	Intergenic	354376	NR_110838	101927087	Hs.518966	NR_110838	ENSG00000261083	LOC101927087	-	uncharacterized LOC101927087	ncRNA
19-PTNLD28-TUMOR_peak_74709	chr4	20466107	20466235	+	7.82273	NA	intron (NM_001289135, intron 4 of 35)	intron (NM_001289135, intron 4 of 35)	-63727	NR_029631	407000		NR_029631		MIR218-1	MIRN218-1|mir-218-1	microRNA 218-1	ncRNA
19-PTNLD28-TUMOR_peak_4025	chr1	63429015	63429105	+	7.82273	NA	Intergenic	Intergenic	179283	NM_032852	84938	Hs.7353	NM_032852	HPRD:07473	ATG4C	APG4-C|APG4C|AUTL1|AUTL3	autophagy related 4C, cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_12290	chr10	20628323	20628418	+	7.82273	NA	Intergenic	L1P1|LINE|L1	-212529	NR_039822	100616383		NR_039822	miRBase:MI0017306	MIR4675	-	microRNA 4675	ncRNA
19-PTNLD28-TUMOR_peak_109218	chrX	113960751	113960854	+	7.82273	NA	intron (NM_001256760, intron 3 of 6)	L1PA2|LINE|L1	11152	NR_031578	100302153		NR_031578	miRBase:MI0003938	MIR1298	MIRN1298|hsa-mir-1298	microRNA 1298	ncRNA
19-PTNLD28-TUMOR_peak_26853	chr12	123001511	123001782	+	7.82273	NA	intron (NR_036434, intron 6 of 10)	intron (NR_036434, intron 6 of 10)	9914	NR_036434	65117	Hs.432996	NM_023012	HPRD:13342	RSRC2	-	arginine/serine-rich coiled-coil 2	protein-coding
19-PTNLD28-TUMOR_peak_28696	chr13	95014789	95014888	+	7.82273	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	117098	NM_001922	1638	Hs.301865	NM_001922	HPRD:01864	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
19-PTNLD28-TUMOR_peak_77751	chr4	156275233	156275329	+	7.82273	NA	intron (NM_001039580, intron 10 of 13)	intron (NM_001039580, intron 10 of 13)	22841	NM_001039580	79884	Hs.61271	NM_001039580	HPRD:07957	MAP9	ASAP	microtubule-associated protein 9	protein-coding
19-PTNLD28-TUMOR_peak_59747	chr20	9374070	9374173	+	7.82273	NA	intron (NM_001172646, intron 16 of 37)	intron (NM_001172646, intron 16 of 37)	85674	NM_000933	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_60113	chr20	20461519	20461671	+	7.82273	NA	intron (NM_020343, intron 36 of 39)	intron (NM_020343, intron 36 of 39)	112830	NM_002196	3642	Hs.89584	NM_002196	HPRD:02480	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
19-PTNLD28-TUMOR_peak_99726	chr8	101514738	101515020	+	7.82273	NA	Intergenic	Intergenic	57060	NM_001270378	157567	Hs.530199	NM_198401	HPRD:14103	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
19-PTNLD28-TUMOR_peak_7796	chr1	163197064	163197155	+	7.82273	NA	intron (NM_001254748, intron 2 of 5)	THE1D|LTR|ERVL-MaLR	-24146	NM_001254749	8490	Hs.24950	NM_003617	HPRD:04471	RGS5	MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129	regulator of G-protein signaling 5	protein-coding
19-PTNLD28-TUMOR_peak_59362	chr20	247588	247828	+	7.82273	NA	Intergenic	Intergenic	9331	NM_207469	400830	Hs.516819	NM_207469	HPRD:16792	DEFB132	DEFB32|UNQ827	defensin, beta 132	protein-coding
19-PTNLD28-TUMOR_peak_35456	chr15	100026727	100026992	+	7.82273	NA	Intergenic	Intergenic	-79274	NM_005587	4205	Hs.268675	NM_005587	HPRD:02807	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
19-PTNLD28-TUMOR_peak_25840	chr12	102417499	102417729	+	7.82273	NA	intron (NM_016053, intron 6 of 6)	intron (NM_016053, intron 6 of 6)	38288	NM_001301107	51019	Hs.405692	NM_016053	HPRD:13031	CCDC53	CGI-116	coiled-coil domain containing 53	protein-coding
19-PTNLD28-TUMOR_peak_18114	chr11	36500440	36500678	+	7.82273	NA	Intergenic	Intergenic	31304	NM_145803	7189	Hs.444172	NM_004620		TRAF6	MGC:3310|RNF85	TNF receptor-associated factor 6, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_78886	chr5	10424349	10424455	+	7.82273	NA	intron (NM_001270661, intron 20 of 22)	MER34B|LTR|ERV1	17561	NR_102746	100505845	Hs.599395	NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45387	chr18	40857259	40857384	+	7.82273	NA	5' UTR (NM_020783, exon 1 of 4)	5' UTR (NM_020783, exon 1 of 4)	294	NM_020783	6860	Hs.8059	NM_020783	HPRD:02519	SYT4	HsT1192	synaptotagmin IV	protein-coding
19-PTNLD28-TUMOR_peak_53272	chr2	69170766	69171014	+	7.82273	NA	Intergenic	L1PA16|LINE|L1	9212	NM_182536	200504	Hs.16757	NM_182536	HPRD:17034	GKN2	BRICD1B|GDDR|PRO813|TFIZ1|VLTI465	gastrokine 2	protein-coding
19-PTNLD28-TUMOR_peak_23314	chr12	19452841	19452982	+	7.82273	NA	intron (NM_001143821, intron 14 of 27)	intron (NM_001143821, intron 14 of 27)	94652	NM_001256787	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_70790	chr3	130195411	130195547	+	7.82273	NA	intron (NM_001278298, intron 40 of 40)	MER5B|DNA|hAT-Charlie	-83699	NM_001102608	131873	Hs.591282	NM_001102608	ENSG00000206384	COL6A6	-	collagen, type VI, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_80541	chr5	71015481	71015650	+	7.82273	NA	intron (NM_004291, intron 1 of 2)	CpG	575	NM_004291	9607	Hs.1707	NM_004291	HPRD:04006	CARTPT	CART	CART prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_76737	chr4	118822123	118822315	+	7.82273	NA	Intergenic	LTR16C|LTR|ERVL	-133281	NM_004784	9348	Hs.480596	NM_004784	ENSG00000164100	NDST3	HSST3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
19-PTNLD28-TUMOR_peak_65384	chr22	37484106	37484415	+	7.82273	NA	intron (NM_001289001, intron 7 of 17)	intron (NM_001289001, intron 7 of 17)	15433	NM_153609	164656	Hs.370885	NM_153609	HPRD:10270	TMPRSS6	IRIDA	transmembrane protease, serine 6	protein-coding
19-PTNLD28-TUMOR_peak_25286	chr12	71809568	71809663	+	7.82273	NA	Intergenic	Intergenic	-23935	NM_003667	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_51966	chr2	30836703	30836883	+	7.82273	NA	intron (NM_182551, intron 6 of 6)	LTR5_Hs|LTR|ERVK	166656	NM_001002257	253558	Hs.468048	NM_182551	HPRD:17458	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_33977	chr15	64736674	64736774	+	7.82273	NA	intron (NM_016213, intron 11 of 12)	intron (NM_016213, intron 11 of 12)	-54895	NM_015042	23060	Hs.595451	NM_015042	HPRD:18754	ZNF609	-	zinc finger protein 609	protein-coding
19-PTNLD28-TUMOR_peak_83422	chr5	154519369	154519462	+	7.82273	NA	Intergenic	Intergenic	126155	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
19-PTNLD28-TUMOR_peak_38150	chr16	59026758	59026859	+	7.82273	NA	Intergenic	L1P2|LINE|L1	-258547	NM_001286220	2806	Hs.599470	NM_002080	HPRD:00684	GOT2	KAT4|KATIV|mitAAT	glutamic-oxaloacetic transaminase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_28196	chr13	49039805	49040272	+	7.82273	NA	intron (NM_000321, intron 23 of 26)	L1HS|LINE|L1	-21198	NM_005767	10161	Hs.123464	NM_005767	HPRD:16465	LPAR6	ARWH1|HYPT8|LAH3|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_91283	chr7	11579959	11580051	+	7.82273	NA	intron (NM_015204, intron 6 of 26)	intron (NM_015204, intron 6 of 26)	291819	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin, type I, domain containing 7A	protein-coding
19-PTNLD28-TUMOR_peak_3501	chr1	52593169	52593328	+	7.82273	NA	Intergenic	Intergenic	-14518	NM_004799	9372	Hs.532345	NM_004799	HPRD:04782	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_22144	chr11	130002293	130002404	+	7.82273	NA	intron (NR_024515, intron 8 of 13)	intron (NR_024515, intron 8 of 13)	-27334	NM_021978	6768	Hs.504315	NM_021978	HPRD:06005	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
19-PTNLD28-TUMOR_peak_75397	chr4	56600152	56600315	+	7.82273	NA	Intergenic	Intergenic	-86004	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_20618	chr11	93904923	93905034	+	7.82273	NA	intron (NM_015368, intron 2 of 4)	intron (NM_015368, intron 2 of 4)	42884	NM_015368	24145	Hs.591976	NM_015368	HPRD:10526	PANX1	MRS1|PX1|UNQ2529	pannexin 1	protein-coding
19-PTNLD28-TUMOR_peak_70844	chr3	131622875	131622981	+	7.82273	NA	intron (NM_001289112, intron 2 of 15)	intron (NM_001289112, intron 2 of 15)	81847	NR_049890	100847040		NR_049890		MIR5704	-	microRNA 5704	ncRNA
19-PTNLD28-TUMOR_peak_14589	chr10	81716433	81716521	+	7.82273	NA	Intergenic	L1PA4|LINE|L1	-7616	NM_003019	6441	Hs.253495	NM_003019	HPRD:01522	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
19-PTNLD28-TUMOR_peak_108342	chrX	51298795	51298884	+	7.82273	NA	Intergenic	L1PA4|LINE|L1	-48546	NR_110654	102723426	Hs.584513	NR_110654		LINC01496	-	long intergenic non-protein coding RNA 1496	ncRNA
19-PTNLD28-TUMOR_peak_53455	chr2	72797661	72797844	+	7.82273	NA	intron (NM_015189, intron 7 of 21)	intron (NM_015189, intron 7 of 21)	255425	NM_015189	23233	Hs.303454	NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding
19-PTNLD28-TUMOR_peak_12889	chr10	34577687	34577788	+	7.82273	NA	intron (NM_001184786, intron 19 of 23)	intron (NM_001184786, intron 19 of 23)	-516129	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_25278	chr12	71608831	71608921	+	7.82273	NA	Intergenic	Intergenic	-57097	NM_004616	7103	Hs.170563	NM_004616	HPRD:02865	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
19-PTNLD28-TUMOR_peak_75905	chr4	80513545	80513636	+	7.82273	NA	Intergenic	MER11D|LTR|ERVK	99843	NR_038826	100506035	Hs.507664	NR_038826	ENSG00000250334	LINC00989	-	long intergenic non-protein coding RNA 989	ncRNA
19-PTNLD28-TUMOR_peak_58212	chr2	213734171	213734264	+	7.82273	NA	Intergenic	AluYa5|SINE|Alu	-56764	NR_039935	100616267		NR_039935	miRBase:MI0017419	MIR4776-1	-	microRNA 4776-1	ncRNA
19-PTNLD28-TUMOR_peak_8454	chr1	178368612	178368712	+	7.82273	NA	intron (NM_170692, intron 4 of 17)	MER45C|DNA|hAT-Tip100	58056	NM_004841	9462	Hs.496139	NM_004841	HPRD:05845	RASAL2	NGAP	RAS protein activator like 2	protein-coding
19-PTNLD28-TUMOR_peak_58597	chr2	223838089	223838213	+	7.82273	NA	Intergenic	L2a|LINE|L2	-78497	NM_080671	23704	Hs.348522	NM_080671	HPRD:09689	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_106675	chr9	138098060	138098148	+	7.82273	NA	Intergenic	LTR13|LTR|ERVK	24649	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	ncRNA
19-PTNLD28-TUMOR_peak_76457	chr4	104119475	104119627	+	7.82273	NA	promoter-TSS (NM_001286734)	promoter-TSS (NM_001286734)	15	NM_001813	1062	Hs.75573	NM_001813	HPRD:00316	CENPE	CENP-E|KIF10|PPP1R61	centromere protein E, 312kDa	protein-coding
19-PTNLD28-TUMOR_peak_4908	chr1	93723491	93723586	+	7.82273	NA	intron (NM_206886, intron 25 of 27)	Tigger13a|DNA|TcMar-Tigger	77265	NM_206886	343099	Hs.482873	NM_206886	ENSG00000122483	CCDC18	NY-SAR-41	coiled-coil domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_88064	chr6	54038056	54038176	+	7.82273	NA	intron (NM_001281746, intron 9 of 11)	intron (NM_001281746, intron 9 of 11)	61900	NM_001281747	90523	Hs.449276	NM_138569	HPRD:12853	MLIP	C6orf142	muscular LMNA-interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_99342	chr8	82147612	82147700	+	7.82273	NA	Intergenic	Intergenic	-45062	NM_001444	2171	Hs.408061	NM_001444	HPRD:05524	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5 (psoriasis-associated)	protein-coding
19-PTNLD28-TUMOR_peak_43006	chr17	64455978	64456115	+	7.82273	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-43074	NR_110822	101928001	Hs.650730	NR_110822	ENSG00000264630	LOC101928001	-	uncharacterized LOC101928001	ncRNA
19-PTNLD28-TUMOR_peak_14843	chr10	91218251	91218354	+	7.82273	NA	intron (NR_120614, intron 1 of 2)	intron (NR_120614, intron 1 of 2)	2554	NR_120614	101926906	Hs.568874	NR_120614	ENSG00000234452	SLC16A12-AS1	-	SLC16A12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15851	chr10	118934518	118934658	+	7.82273	NA	Intergenic	Intergenic	-6022	NR_121650	101927704	Hs.342943	NR_121650		MIR3663HG	-	MIR3663 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_109137	chrX	108957703	108957793	+	7.82273	NA	intron (NM_022977, intron 1 of 16)	Tigger3|DNA|TcMar-Tigger	18873	NM_022977	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_89173	chr6	113816862	113816980	+	7.82273	NA	Intergenic	L2a|LINE|L2	-361606	NM_002356	4082	Hs.519909	NM_002356	HPRD:07519	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
19-PTNLD28-TUMOR_peak_91445	chr7	18906391	18906536	+	7.82273	NA	intron (NM_178423, intron 21 of 25)	intron (NM_178423, intron 21 of 25)	250832	NM_000474	7291	Hs.66744	NM_000474	HPRD:03374	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_75339	chr4	54774963	54775114	+	7.82273	NA	Intergenic	Intergenic	78411	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
19-PTNLD28-TUMOR_peak_108038	chrX	41578148	41578308	+	7.82273	NA	intron (NM_001126055, intron 5 of 24)	LTR35A|LTR|ERV1	-5180	NM_080817	27197	Hs.567457	NM_080817	HPRD:06084	GPR82	-	G protein-coupled receptor 82	protein-coding
19-PTNLD28-TUMOR_peak_64657	chr22	23285057	23285159	+	7.82273	NA	Intergenic	Intergenic	55148	NM_001178126	100423062	Hs.449585	NM_001178126	ENSG00000254709	IGLL5	-	immunoglobulin lambda-like polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_37672	chr16	48460297	48460402	+	7.82273	NA	Intergenic	AluJb|SINE|Alu	-41120	NM_003031	6477	Hs.706828	NM_003031	HPRD:03736	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_93748	chr7	84335203	84335301	+	7.82273	NA	Intergenic	AluJr|SINE|Alu	173460	NR_110079	101927378	Hs.539042	NR_110079	ENSG00000235139	LOC101927378	-	uncharacterized LOC101927378	ncRNA
19-PTNLD28-TUMOR_peak_89876	chr6	148628015	148628104	+	7.82273	NA	Intergenic	Intergenic	-35670	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33526	chr15	49919945	49920043	+	7.82273	NA	intron (NM_001144955, intron 2 of 4)	Tigger3b|DNA|TcMar-Tigger	6768	NM_020234	56986	Hs.127432	NM_020234	HPRD:17474	DTWD1	-	DTW domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_87244	chr6	37865285	37865426	+	7.82273	NA	intron (NM_021943, intron 1 of 5)	L1ME3|LINE|L1	78048	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_109574	chrX	135055955	135056204	+	7.82273	NA	promoter-TSS (NM_173470)	promoter-TSS (NM_173470)	55	NM_173470	93380	Hs.110702	NM_173470	HPRD:06626	MMGT1	EMC5|TMEM32	membrane magnesium transporter 1	protein-coding
19-PTNLD28-TUMOR_peak_27496	chr13	24845958	24846405	+	7.82273	NA	intron (NM_001286793, intron 1 of 8)	intron (NM_001286793, intron 1 of 8)	1356	NM_001286794	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_66731	chr3	13420819	13420931	+	7.82273	NA	intron (NM_024923, intron 7 of 39)	intron (NM_024923, intron 7 of 39)	40944	NM_024923	23225	Hs.475525	NM_024923	HPRD:06368	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
19-PTNLD28-TUMOR_peak_5329	chr1	109370887	109370996	+	7.82273	NA	intron (NM_152763, intron 10 of 15)	intron (NM_152763, intron 10 of 15)	28785	NM_152763	254268	Hs.729441	NM_152763	HPRD:11325	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_92068	chr7	38027469	38027593	+	7.82273	NA	Intergenic	Intergenic	66610	NM_001242948	54749	Hs.563491	NM_017549	HPRD:16865	EPDR1	EPDR|MERP-1|MERP1|UCC1	ependymin related 1	protein-coding
19-PTNLD28-TUMOR_peak_90121	chr6	153491768	153491870	+	7.82273	NA	Intergenic	LTR78B|LTR|ERV1	-39430	NM_012419	26575	Hs.166313	NM_012419	HPRD:06223	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
19-PTNLD28-TUMOR_peak_94974	chr7	120567022	120567240	+	7.82273	NA	Intergenic	MER21C|LTR|ERVL	-23686	NM_019071	54556	Hs.489811	NM_019071	HPRD:06321	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_84269	chr5	176375517	176375768	+	7.82273	NA	intron (NM_016290, intron 9 of 14)	L2c|LINE|L2	-49309	NM_002115	3101	Hs.411695	NM_002115	HPRD:00806	HK3	HKIII|HXK3	hexokinase 3 (white cell)	protein-coding
19-PTNLD28-TUMOR_peak_48774	chr19	36687287	36687396	+	7.82273	NA	intron (NM_001042474, intron 2 of 4)	intron (NM_001042474, intron 2 of 4)	-18163	NM_001099639	7705	Hs.643436	NM_007145	HPRD:03296	ZNF146	OZF	zinc finger protein 146	protein-coding
19-PTNLD28-TUMOR_peak_78325	chr4	185760038	185760172	+	7.82273	NA	Intergenic	L2a|LINE|L2	8095	NR_037867	731424	Hs.427740	NR_037867	ENSG00000251230	LOC731424	-	uncharacterized LOC731424	ncRNA
19-PTNLD28-TUMOR_peak_8373	chr1	176366645	176366744	+	7.82273	NA	Intergenic	SVA_D|Other|Other	-65613	NM_020318	60676	Hs.187284	NM_020318	HPRD:10156	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
19-PTNLD28-TUMOR_peak_42410	chr17	53820549	53820666	+	7.82273	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-7733	NM_021213	58488	Hs.285218	NM_021213	HPRD:06927	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_56112	chr2	143624870	143624984	+	7.82273	NA	Intergenic	Intergenic	-10268	NM_003937	8942	Hs.470126	NM_003937	HPRD:08940	KYNU	-	kynureninase	protein-coding
19-PTNLD28-TUMOR_peak_75614	chr4	71761208	71761315	+	7.82273	NA	Intergenic	Intergenic	-6796	NM_001244767	92597	Hs.691454	NM_173468	HPRD:17582	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
19-PTNLD28-TUMOR_peak_28512	chr13	76435219	76435322	+	7.82273	NA	Intergenic	L2a|LINE|L2	-9904	NM_001257995	729420	Hs.586820	NM_001257995	ENSG00000178734	LMO7DN	C13orf45	LMO7 downstream neighbor	protein-coding
19-PTNLD28-TUMOR_peak_70351	chr3	124670034	124670125	+	7.82273	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-16484	NM_033049	56667	Hs.5940	NM_033049	HPRD:10101	MUC13	DRCC1|MUC-13	mucin 13, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_67656	chr3	40555417	40555644	+	7.82273	NA	intron (NM_175888, intron 4 of 4)	LTR13|LTR|ERVK	7928	NM_001256168	253639	Hs.581541	NM_175888	HPRD:15878	ZNF620	-	zinc finger protein 620	protein-coding
19-PTNLD28-TUMOR_peak_48296	chr19	23930330	23930418	+	7.82273	NA	intron (NM_138286, intron 3 of 3)	AluY|SINE|Alu	11319	NM_138286	148213	Hs.399952	NM_138286	HPRD:08102	ZNF681	-	zinc finger protein 681	protein-coding
19-PTNLD28-TUMOR_peak_107955	chrX	38925260	38925494	+	7.82273	NA	Intergenic	Intergenic	261239	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
19-PTNLD28-TUMOR_peak_14640	chr10	82459389	82459705	+	7.82273	NA	Intergenic	Intergenic	158972	NM_001145719	387694	Hs.147643	NM_207372	HPRD:18050	SH2D4B	-	SH2 domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_77816	chr4	158929829	158930116	+	7.82273	NA	Intergenic	Intergenic	163746	NM_016613	51313	Hs.567498	NM_016613	HPRD:13194	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
19-PTNLD28-TUMOR_peak_15135	chr10	99502845	99503226	+	7.82273	NA	intron (NM_001002261, intron 2 of 11)	intron (NM_001002261, intron 2 of 11)	4801	NM_001002261	118813	Hs.744075	NM_144588	HPRD:15735	ZFYVE27	PROTRUDIN|SPG33	zinc finger, FYVE domain containing 27	protein-coding
19-PTNLD28-TUMOR_peak_78859	chr5	9971505	9971670	+	7.82273	NA	Intergenic	Intergenic	-67651	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LOC285692	-	uncharacterized LOC285692	ncRNA
19-PTNLD28-TUMOR_peak_32260	chr14	104478277	104478494	+	7.82273	NA	intron (NM_153046, intron 20 of 35)	MER77|LTR|ERVL	-69740	NM_001257268	647286	Hs.632325	NM_001257268	ENSG00000227729	RD3L	TDRD9-AS1|TDRD9AS1	retinal degeneration 3-like	protein-coding
19-PTNLD28-TUMOR_peak_11105	chr1	235843123	235843211	+	7.82273	NA	intron (NM_001301365, intron 48 of 52)	intron (NM_001301365, intron 48 of 52)	-29113	NM_001098721	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_24005	chr12	47786993	47787081	+	7.82273	NA	Intergenic	Intergenic	-176811	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_66467	chr3	9633037	9633252	+	7.82273	NA	Intergenic	SVA_D|Other|Other	-37658	NM_198560	375323	Hs.56782	NM_198560		LHFPL4	-	lipoma HMGIC fusion partner-like 4	protein-coding
19-PTNLD28-TUMOR_peak_59126	chr2	238930146	238930261	+	7.82273	NA	intron (NR_103500, intron 6 of 10)	intron (NR_103500, intron 6 of 10)	-39362	NM_016510	51540	Hs.731909	NM_016510	HPRD:15303	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
19-PTNLD28-TUMOR_peak_81662	chr5	114887160	114887365	+	7.82273	NA	Intergenic	Intergenic	-6671	NM_020177	56929	Hs.47367	NM_020177	HPRD:16384	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog c (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_9283	chr1	201941915	201942031	+	7.82273	NA	Intergenic	Intergenic	-9793	NM_020216	6051	Hs.497391	NM_020216	HPRD:04055	RNPEP	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding
19-PTNLD28-TUMOR_peak_46779	chr19	4229327	4229437	+	7.82273	NA	promoter-TSS (NM_005755)	promoter-TSS (NM_005755)	-158	NM_005755	10148	Hs.501452	NM_005755	HPRD:12051	EBI3	IL-27B|IL27B	Epstein-Barr virus induced 3	protein-coding
19-PTNLD28-TUMOR_peak_92990	chr7	67381686	67381880	+	7.82273	NA	Intergenic	Intergenic	-103457	NR_120514	102723427	Hs.583491	NR_120514		LOC102723427	-	uncharacterized LOC102723427	ncRNA
19-PTNLD28-TUMOR_peak_62795	chr21	15975017	15975180	+	7.82273	NA	intron (NM_001256579, intron 4 of 6)	intron (NM_001256579, intron 4 of 6)	-19375	NM_001256370	64092	Hs.473341	NM_022136	HPRD:06413	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
19-PTNLD28-TUMOR_peak_33694	chr15	57648984	57649111	+	7.82273	NA	Intergenic	AluJo|SINE|Alu	-19656	NM_032866	84952	Hs.148989	NM_032866	HPRD:09708	CGNL1	JACOP	cingulin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_33918	chr15	63428136	63428432	+	7.82273	NA	intron (NM_032857, intron 5 of 5)	AluJr|SINE|Alu	14285	NM_171846	114294	Hs.410388	NM_032857	HPRD:07466	LACTB	G24|MRPL56	lactamase, beta	protein-coding
19-PTNLD28-TUMOR_peak_66663	chr3	12531336	12531474	+	7.82273	NA	exon (NM_001145392, exon 2 of 12)	exon (NM_001145392, exon 2 of 12)	5395	NM_001145392	80746	Hs.335550	NM_025265	HPRD:10576	TSEN2	PCH2B|SEN2|SEN2L	TSEN2 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_31970	chr14	99266508	99266622	+	7.82273	NA	Intergenic	Intergenic	88615	NM_182560	283598	Hs.448754	NM_182560	HPRD:08075	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_44333	chr18	3512069	3512257	+	7.82273	NA	intron (NM_001242764, intron 7 of 9)	intron (NM_001242764, intron 7 of 9)	45915	NR_110428	100505592	Hs.635114	NR_110428	ENSG00000266835	LOC100505592	-	uncharacterized LOC100505592	ncRNA
19-PTNLD28-TUMOR_peak_74740	chr4	22387501	22387605	+	7.82273	NA	Intergenic	Intergenic	-46264	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
19-PTNLD28-TUMOR_peak_24949	chr12	63688172	63688277	+	7.82273	NA	Intergenic	Intergenic	-141634	NM_000706	552	Hs.2131	NM_000706		AVPR1A	AVPR V1a|AVPR1|V1aR	arginine vasopressin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_72649	chr3	182107325	182107465	+	7.82273	NA	Intergenic	Intergenic	96755	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	FLJ46066	-	uncharacterized LOC401103	ncRNA
19-PTNLD28-TUMOR_peak_79273	chr5	27854431	27854561	+	7.82273	NA	Intergenic	MLT2A2|LTR|ERVL	382097	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA
19-PTNLD28-TUMOR_peak_28777	chr13	98741554	98741811	+	7.82273	NA	Intergenic	LTR16C|LTR|ERVL	-53134	NM_001286839	10160	Hs.403917	NM_005766	ENSG00000152767	FARP1	CDEP|FARP1-IT1|PLEKHC2|PPP1R75	FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
19-PTNLD28-TUMOR_peak_107891	chrX	31239268	31239548	+	7.82273	NA	intron (NM_004022, intron 21 of 33)	L2c|LINE|L2	45616	NM_004015	1756	Hs.495912	NM_000109	HPRD:02303	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
19-PTNLD28-TUMOR_peak_4477	chr1	79083358	79083486	+	7.82273	NA	Intergenic	LTR41|LTR|ERVL	-2666	NM_006820	10964	Hs.744918	NM_006820	HPRD:13728	IFI44L	C1orf29	interferon-induced protein 44-like	protein-coding
19-PTNLD28-TUMOR_peak_72603	chr3	180024612	180024733	+	7.82273	NA	Intergenic	Intergenic	-269831	NM_001256750	51555	Hs.235331	NM_016559	HPRD:11425	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5-like	protein-coding
19-PTNLD28-TUMOR_peak_105987	chr9	126077741	126077845	+	7.82273	NA	Intergenic	Intergenic	-40653	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_57547	chr2	192711767	192711889	+	7.82273	NA	5' UTR (NM_004657, exon 1 of 2)	5' UTR (NM_004657, exon 1 of 2)	178	NM_004657	8436	Hs.26530	NM_004657	HPRD:09470	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding
19-PTNLD28-TUMOR_peak_80193	chr5	61113690	61113840	+	7.82273	NA	Intergenic	Intergenic	-82240	NR_105000	100506526	Hs.662277	NR_105000	ENSG00000251575	LOC100506526	-	uncharacterized LOC100506526	ncRNA
19-PTNLD28-TUMOR_peak_57653	chr2	198287495	198287587	+	7.82273	NA	intron (NM_001005526, intron 2 of 4)	AluY|SINE|Alu	12230	NM_001005526	23451	Hs.632554	NM_012433	HPRD:09281	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b, subunit 1, 155kDa	protein-coding
19-PTNLD28-TUMOR_peak_59591	chr20	3961033	3961144	+	7.82273	NA	intron (NM_001134338, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	34966	NM_007219	11237	Hs.589884	NM_007219	HPRD:10198	RNF24	G1L	ring finger protein 24	protein-coding
19-PTNLD28-TUMOR_peak_69984	chr3	116782783	116783055	+	7.82273	NA	Intergenic	L2|LINE|L2	142641	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_35083	chr15	88115863	88116165	+	7.82273	NA	Intergenic	Intergenic	-4146	NR_026869	145978	Hs.350808	NM_152454	HPRD:08101	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
19-PTNLD28-TUMOR_peak_52483	chr2	44799805	44799898	+	7.82273	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	-23192	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_81028	chr5	83699810	83699902	+	7.82273	NA	Intergenic	Intergenic	-19171	NM_001278642	10085	Hs.482730	NM_005711	HPRD:09350	EDIL3	DEL1	EGF-like repeats and discoidin I-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_79759	chr5	45658656	45658756	+	7.82273	NA	intron (NM_021072, intron 1 of 7)	L1PA2|LINE|L1	37514	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
19-PTNLD28-TUMOR_peak_82224	chr5	133638662	133638942	+	7.82273	NA	intron (NM_001300853, intron 10 of 12)	AluSx|SINE|Alu	63963	NM_016508	51265	Hs.719926	NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin-dependent kinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_89257	chr6	118508875	118508998	+	7.82273	NA	intron (NM_001029858, intron 2 of 7)	intron (NM_001029858, intron 2 of 7)	280247	NM_001029858	222553	Hs.654841	NM_001029858	HPRD:18751	SLC35F1	C6orf169|dJ230I3.1	solute carrier family 35, member F1	protein-coding
19-PTNLD28-TUMOR_peak_8372	chr1	176344254	176344348	+	7.82273	NA	Intergenic	Intergenic	-88006	NM_020318	60676	Hs.187284	NM_020318	HPRD:10156	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
19-PTNLD28-TUMOR_peak_13543	chr10	50506815	50506906	+	7.82273	NA	promoter-TSS (NM_001135196)	promoter-TSS (NM_001135196)	78	NR_108038	100506769	Hs.562293	NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_12395	chr10	23614132	23614322	+	7.82273	NA	intron (NM_153714, intron 2 of 4)	AluJr|SINE|Alu	19545	NM_153714	256815	Hs.522360	NM_153714	HPRD:12585	C10orf67	-	chromosome 10 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_99617	chr8	98189492	98189598	+	7.82273	NA	intron (NR_125390, intron 2 of 2)	HERVH-int|LTR|ERV1	100631	NM_033512	85453	Hs.173094	NM_033512	HPRD:15576	TSPYL5	-	TSPY-like 5	protein-coding
19-PTNLD28-TUMOR_peak_53898	chr2	86709275	86709392	+	7.82273	NA	intron (NM_001146688, intron 17 of 25)	intron (NM_001146688, intron 17 of 25)	40749	NM_001146688	55818	Hs.557425	NM_018433	HPRD:11054	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine (K)-specific demethylase 3A	protein-coding
19-PTNLD28-TUMOR_peak_8448	chr1	178279854	178280010	+	7.82273	NA	intron (NM_170692, intron 3 of 17)	MER91B|DNA|hAT-Tip100	-30674	NM_004841	9462	Hs.496139	NM_004841	HPRD:05845	RASAL2	NGAP	RAS protein activator like 2	protein-coding
19-PTNLD28-TUMOR_peak_110138	chrY	6720582	6720672	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	21441	NM_001143	266	Hs.1238	NM_001143	HPRD:02462	AMELY	AMGL|AMGY	amelogenin, Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_49284	chr19	44331363	44331522	+	7.82273	NA	promoter-TSS (NM_181845)	promoter-TSS (NM_181845)	-2	NM_001297752	284349	Hs.652513	NM_181845	ENSG00000167637	ZNF283	HZF19|HZF41	zinc finger protein 283	protein-coding
19-PTNLD28-TUMOR_peak_29124	chr13	113398925	113399037	+	7.82273	NA	TTS (NR_046661)	TTS (NR_046661)	10064	NR_109811	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21681	chr11	121254603	121254720	+	7.82273	NA	Intergenic	Intergenic	-68251	NM_003105	6653	Hs.368592	NM_003105	HPRD:03595	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin-related receptor, L(DLR class) A repeats containing	protein-coding
19-PTNLD28-TUMOR_peak_74683	chr4	19028049	19028229	+	7.82273	NA	Intergenic	Intergenic	-1004656	NM_153686	254251	Hs.446201	NM_153686	HPRD:10088	LCORL	MLR1	ligand dependent nuclear receptor corepressor-like	protein-coding
19-PTNLD28-TUMOR_peak_54382	chr2	98574407	98574496	+	7.82273	NA	intron (NM_015348, intron 1 of 40)	intron (NM_015348, intron 1 of 40)	37903	NM_015348	23505	Hs.469376	NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
19-PTNLD28-TUMOR_peak_21587	chr11	119380920	119381106	+	7.82273	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-86767	NM_006288	7070	Hs.644697	NM_006288		THY1	CD90	Thy-1 cell surface antigen	protein-coding
19-PTNLD28-TUMOR_peak_20843	chr11	102097530	102097751	+	7.82273	NA	intron (NM_001282098, intron 5 of 6)	intron (NM_001282098, intron 5 of 6)	-90541	NM_182962	330	Hs.127799	NM_001165	HPRD:03426	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_3427	chr1	50436887	50437021	+	7.82273	NA	intron (NM_032785, intron 1 of 13)	Tigger7|DNA|TcMar-Tigger	52672	NM_032785	84871	Hs.551844	NM_032785	HPRD:07487	AGBL4	CCP6	ATP/GTP binding protein-like 4	protein-coding
19-PTNLD28-TUMOR_peak_36489	chr16	15509381	15509491	+	7.82273	NA	Intergenic	Intergenic	-18889	NM_033201	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_33507	chr15	48858249	48858391	+	7.82273	NA	intron (NM_000138, intron 6 of 65)	intron (NM_000138, intron 6 of 65)	79665	NM_000138	2200	Hs.591133	NM_000138	HPRD:00618	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
19-PTNLD28-TUMOR_peak_36918	chr16	24697395	24697539	+	7.82273	NA	Intergenic	Intergenic	-15084	NR_122072	400511	Hs.592028	NR_122072	HPRD:16985	LOC400511	-	uncharacterized LOC400511	ncRNA
19-PTNLD28-TUMOR_peak_106700	chr9	138458464	138458601	+	7.82273	NA	TTS (NM_002571)	TTS (NM_002571)	4928	NM_001018049	5047	Hs.532325	NM_002571	HPRD:01411	PAEP	GD|GdA|GdF|GdS|PAEG|PEP|PP14	progestagen-associated endometrial protein	protein-coding
19-PTNLD28-TUMOR_peak_30708	chr14	63159061	63159175	+	7.82273	NA	Intergenic	Intergenic	352838	NM_172375	27133	Hs.27043	NM_139318	HPRD:10421	KCNH5	EAG2|H-EAG2|Kv10.2|hEAG2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
19-PTNLD28-TUMOR_peak_32700	chr15	28331399	28331502	+	7.82273	NA	intron (NM_001300984, intron 1 of 22)	L1MDa|LINE|L1	13008	NM_001300984	4948	Hs.654411	NM_000275	HPRD:01945	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
19-PTNLD28-TUMOR_peak_51667	chr2	26635213	26635390	+	7.82273	NA	intron (NM_145038, intron 1 of 16)	intron (NM_145038, intron 1 of 16)	10517	NM_145038	92749	Hs.393714	NM_145038	HPRD:11312	DRC1	C2orf39|CCDC164|CILD21	dynein regulatory complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_4500	chr1	81472819	81472960	+	7.82273	NA	Intergenic	Intergenic	-692566	NM_001297704	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_90513	chr6	167322433	167322525	+	7.82273	NA	Intergenic	Intergenic	5293	NR_046644	100861523	Hs.634640	NR_046644		RPS6KA2-AS1	-	RPS6KA2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53982	chr2	88256127	88256332	+	7.82273	NA	intron (NM_001024457, intron 1 of 22).2	L1M4b|LINE|L1	29080	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_8143	chr1	170936349	170936472	+	7.82273	NA	intron (NM_001163629, intron 7 of 21)	intron (NM_001163629, intron 7 of 21)	31774	NM_025063	80133	Hs.591489	NM_025063	HPRD:08672	MROH9	ARMC11|C1orf129	maestro heat-like repeat family member 9	protein-coding
19-PTNLD28-TUMOR_peak_100616	chr8	125685751	125685868	+	7.82273	NA	intron (NM_001282974, intron 3 of 13)	intron (NM_001282974, intron 3 of 13)	54939	NM_001282971	9788	Hs.336994	NM_014751	HPRD:12243	MTSS1	MIM|MIMA|MIMB	metastasis suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_56256	chr2	150346066	150346205	+	7.82273	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-97737	NR_110240	101929231	Hs.5324	NR_110240		LOC101929231	-	uncharacterized LOC101929231	ncRNA
19-PTNLD28-TUMOR_peak_27721	chr13	31470075	31470203	+	7.82273	NA	intron (NR_038287, intron 2 of 3)	intron (NR_038287, intron 2 of 3)	-10173	NM_032849	84935	Hs.147880	NM_032849	HPRD:07872	MEDAG	AWMS3|C13orf33|MEDA-4|MEDA4|hAWMS3	mesenteric estrogen-dependent adipogenesis	protein-coding
19-PTNLD28-TUMOR_peak_45386	chr18	40629086	40629282	+	7.82273	NA	intron (NM_002930, intron 1 of 4)	intron (NM_002930, intron 1 of 4)	66473	NM_001272077	6014	Hs.464985	NM_002930	HPRD:15253	RIT2	RIBA|RIN|ROC2	Ras-like without CAAX 2	protein-coding
19-PTNLD28-TUMOR_peak_61062	chr20	39019399	39019548	+	7.82273	NA	Intergenic	MLT2F|LTR|ERVL	298407	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_103832	chr9	75043368	75043564	+	7.82273	NA	Intergenic	Intergenic	-63303	NM_006007	7763	Hs.406096	NM_006007	HPRD:05302	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger, AN1-type domain 5	protein-coding
19-PTNLD28-TUMOR_peak_8630	chr1	181352991	181353127	+	7.82273	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-99627	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_77866	chr4	160124258	160124366	+	7.82273	NA	Intergenic	Intergenic	-64686	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_97721	chr8	24086960	24087085	+	7.82273	NA	Intergenic	Intergenic	-64558	NM_021777	10863	Hs.174030	NM_014265	HPRD:08391	ADAM28	ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
19-PTNLD28-TUMOR_peak_26197	chr12	109767622	109767802	+	7.82273	NA	Intergenic	L2a|LINE|L2	-20687	NM_213596	121643	Hs.528316	NM_213596	HPRD:13550	FOXN4	-	forkhead box N4	protein-coding
19-PTNLD28-TUMOR_peak_108929	chrX	95642107	95642224	+	7.82273	NA	Intergenic	Intergenic	-49264	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_83318	chr5	152022118	152022258	+	7.82273	NA	intron (NR_109877, intron 4 of 4)	intron (NR_109877, intron 4 of 4)	-237348	NM_020167	56923	Hs.731911	NM_020167	HPRD:12003	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_17762	chr11	28751961	28752214	+	7.82273	NA	Intergenic	Intergenic	-252992	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_74698	chr4	19809254	19809416	+	7.82273	NA	Intergenic	MIRc|SINE|MIR	-445852	NM_001289135	9353	Hs.29802	NM_004787	HPRD:04776	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_97289	chr8	16461612	16461732	+	7.82273	NA	Intergenic	L1M6|LINE|L1	398002	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_29573	chr14	24693845	24694040	+	7.82273	NA	intron (NM_001199823, intron 1 of 6)	L1MC5|LINE|L1	7634	NM_006156	4738	Hs.531064	NM_006156	HPRD:04412	NEDD8	NEDD-8	neural precursor cell expressed, developmentally down-regulated 8	protein-coding
19-PTNLD28-TUMOR_peak_85663	chr6	16675326	16675452	+	7.82273	NA	intron (NM_001128164, intron 2 of 7)	intron (NM_001128164, intron 2 of 7)	86332	NM_001128164	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_98300	chr8	38770324	38770461	+	7.82273	NA	intron (NM_021623, intron 1 of 12)	intron (NM_021623, intron 1 of 12)	11639	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_89514	chr6	133986239	133986380	+	7.82273	NA	intron (NR_109982, intron 4 of 8)	SVA_F|Other|Other	-155976	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
19-PTNLD28-TUMOR_peak_97264	chr8	13016756	13016984	+	7.82273	NA	intron (NM_182643, intron 5 of 17)	intron (NM_182643, intron 5 of 17)	-26061	NM_006094	10395	Hs.134296	NM_006094	HPRD:05035	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_67102	chr3	22054031	22054227	+	7.82273	NA	Intergenic	Intergenic	55498	NR_046876	100874221	Hs.160616	NR_046876		ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_69506	chr3	102939809	102939971	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	786031	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_8055	chr1	168378253	168378345	+	7.82273	NA	intron (NR_037851, intron 3 of 3)	intron (NR_037851, intron 3 of 3)	13595	NR_037851	100505918	Hs.568494	NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
19-PTNLD28-TUMOR_peak_31103	chr14	70553958	70554046	+	7.82273	NA	intron (NM_033262, intron 2 of 7)	intron (NM_033262, intron 2 of 7)	-7068	NM_001130417	6547	Hs.337696	NM_033262	HPRD:09723	SLC8A3	NCX3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_67467	chr3	34021887	34022008	+	7.82273	NA	Intergenic	Intergenic	181884	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_35343	chr15	94613730	94613884	+	7.82273	NA	intron (NR_120320, intron 2 of 8)	AmnSINE1|SINE|Deu	37360	NR_120320	101927112	Hs.134687	NR_120320	ENSG00000259724	LOC101927112	-	uncharacterized LOC101927112	ncRNA
19-PTNLD28-TUMOR_peak_56066	chr2	140248548	140248944	+	7.82273	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	593852	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_59711	chr20	8112665	8112783	+	7.82273	NA	promoter-TSS (NM_182734)	promoter-TSS (NM_182734)	-188	NM_182734	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_63108	chr21	32142144	32142326	+	7.82273	NA	Intergenic	Intergenic	-14539	NM_181619	337977	Hs.567837	NM_181619		KRTAP21-1	KAP21.1	keratin associated protein 21-1	protein-coding
19-PTNLD28-TUMOR_peak_23367	chr12	21712908	21713022	+	7.82273	NA	intron (NM_021957, intron 8 of 15)	L1MC5|LINE|L1	33709	NM_030572	80763	Hs.130692	NM_030572		SPX	C12orf39	spexin hormone	protein-coding
19-PTNLD28-TUMOR_peak_107896	chrX	31526585	31526780	+	7.82273	NA	promoter-TSS (NM_004014)	promoter-TSS (NM_004014)	-267	NM_004014	1756	Hs.495912	NM_000109	HPRD:02303	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
19-PTNLD28-TUMOR_peak_109379	chrX	124748436	124748524	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	294511	NM_001195272	100129520	Hs.728728	NM_001195272		LOC100129520	-	testis expressed sequence 13-like	protein-coding
19-PTNLD28-TUMOR_peak_80748	chr5	74897881	74898147	+	7.82273	NA	Intergenic	MER77|LTR|ERVL	-9287	NM_001276713	728780	Hs.370455	NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_27429	chr13	22629334	22629439	+	7.82273	NA	Intergenic	Intergenic	-155038	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_107674	chrX	17043095	17043225	+	7.82273	NA	intron (NM_001080975, intron 3 of 17)	intron (NM_001080975, intron 3 of 17)	78346	NM_001080975	9185	Hs.186810	NM_004726	HPRD:02262	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_11782	chr10	5051519	5051648	+	7.82273	NA	intron (NM_001354, intron 1 of 10)	intron (NM_001354, intron 1 of 10)	-5377	NM_001135241	1646	Hs.460260	NM_001354	HPRD:11857	AKR1C2	AKR1C-pseudo|BABP|DD|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8|TDD	aldo-keto reductase family 1, member C2	protein-coding
19-PTNLD28-TUMOR_peak_23241	chr12	15190169	15190270	+	7.82273	NA	Intergenic	LTR8|LTR|ERV1	35452	NR_120466	101928340	Hs.401232	NR_120466		LINC01489	-	long intergenic non-protein coding RNA 1489	ncRNA
19-PTNLD28-TUMOR_peak_69329	chr3	94022168	94022259	+	7.82273	NA	Intergenic	Intergenic	-240146	NM_001195643	200895	Hs.718516	NM_176815	HPRD:11246	DHFRL1	DHFRP4	dihydrofolate reductase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96838	chr8	248616	248774	+	7.82273	NA	Intergenic	Intergenic	66145	NM_001287254	169270	Hs.591388	NM_173539	HPRD:11731	ZNF596	-	zinc finger protein 596	protein-coding
19-PTNLD28-TUMOR_peak_97738	chr8	25280446	25280546	+	7.82273	NA	intron (NM_001083111, intron 2 of 3)	intron (NM_001083111, intron 2 of 3)	2060	NM_001083111	2796	Hs.82963	NM_000825	HPRD:08860	GNRH1	GNRH|GRH|HH12|LHRH|LNRH	gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)	protein-coding
19-PTNLD28-TUMOR_peak_77829	chr4	159235950	159236110	+	7.82273	NA	Intergenic	Intergenic	104629	NM_018342	55314	Hs.176227	NM_018342	HPRD:07736	TMEM144	-	transmembrane protein 144	protein-coding
19-PTNLD28-TUMOR_peak_58158	chr2	210825712	210825946	+	7.82273	NA	intron (NM_182587, intron 50 of 62)	(GA)n|Simple_repeat|Simple_repeat	-41460	NM_001278289	6120	Hs.282260	NM_006916		RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
19-PTNLD28-TUMOR_peak_62804	chr21	16283737	16283895	+	7.82273	NA	Intergenic	L1MA3|LINE|L1	153310	NM_003489	8204	Hs.155017	NM_003489	HPRD:03927	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_76993	chr4	127820669	127820906	+	7.82273	NA	Intergenic	Intergenic	-733300	NM_015693	27152	Hs.391481	NM_015693		INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
19-PTNLD28-TUMOR_peak_88106	chr6	56235426	56235644	+	7.82273	NA	intron (NR_046940, intron 2 of 5)	intron (NR_046940, intron 2 of 5)	-123157	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_22082	chr11	128986262	128986356	+	7.82273	NA	intron (NM_001142685, intron 4 of 21)	intron (NM_001142685, intron 4 of 21)	75784	NM_001142685	9743	Hs.440379	NM_014715	HPRD:12257	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
19-PTNLD28-TUMOR_peak_25145	chr12	68426116	68426209	+	7.82273	NA	Intergenic	Intergenic	42937	NR_104124	100885789	Hs.439832	NR_104124	ENSG00000255733	IFNG-AS1	GS1-410F4.2|Tmevpg1	IFNG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52089	chr2	36401077	36401487	+	7.82273	NA	Intergenic	Intergenic	181431	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_65186	chr22	32455063	32455165	+	7.82273	NA	promoter-TSS (NM_001256314)	promoter-TSS (NM_001256314)	-43	NM_001256314	6523	Hs.1964	NM_000343	HPRD:01668	SLC5A1	D22S675|NAGT|SGLT1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_68701	chr3	62703770	62703946	+	7.82273	NA	intron (NM_183393, intron 3 of 26)	L2a|LINE|L2	157206	NM_003716	8618	Hs.654933	NM_003716	HPRD:05236	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
19-PTNLD28-TUMOR_peak_103725	chr9	72561817	72561906	+	7.82273	NA	Intergenic	MIR3|SINE|MIR	-96636	NM_153267	256691	Hs.547172	NM_153267	HPRD:14353	MAMDC2	-	MAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_90034	chr6	151335643	151335757	+	7.82273	NA	intron (NM_001242768, intron 22 of 27)	intron (NM_001242768, intron 22 of 27)	148231	NM_001242768	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_21045	chr11	108860751	108860915	+	7.82273	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	325081	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_30530	chr14	58332571	58332674	+	7.82273	NA	promoter-TSS (NM_001206920)	promoter-TSS (NM_001206920)	-30	NM_001206920	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35, member F4	protein-coding
19-PTNLD28-TUMOR_peak_56580	chr2	160748746	160748917	+	7.82273	NA	intron (NM_002349, intron 3 of 34)	MIR|SINE|MIR	12436	NM_001198760	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_9873	chr1	209527721	209527894	+	7.82273	NA	Intergenic	Intergenic	-74361	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_91382	chr7	16966029	16966157	+	7.82273	NA	Intergenic	Intergenic	-44480	NM_176813	155465	Hs.100686	NM_176813	HPRD:16545	AGR3	AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3	protein-coding
19-PTNLD28-TUMOR_peak_74715	chr4	20827278	20827376	+	7.82273	NA	intron (NM_147183, intron 2 of 7)	L2|LINE|L2	24964	NM_147181	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_22869	chr12	7527851	7527965	+	7.82273	NA	exon (NM_174941, exon 11 of 20)	exon (NM_174941, exon 11 of 20)	68873	NM_174941	283316	Hs.631727	NM_174941	HPRD:07301	CD163L1	CD163B|M160	CD163 molecule-like 1	protein-coding
19-PTNLD28-TUMOR_peak_56404	chr2	154576158	154576261	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	-152217	NM_052917	114805	Hs.470277	NM_052917	HPRD:16325	GALNT13	GalNAc-T13	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
19-PTNLD28-TUMOR_peak_9929	chr1	211643438	211643595	+	7.82273	NA	Intergenic	Intergenic	22743	NM_001164688	343035	Hs.632495	NM_183059	HPRD:12726	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding
19-PTNLD28-TUMOR_peak_35380	chr15	98069178	98069326	+	7.82273	NA	Intergenic	Intergenic	-4211	NR_120324	101927286	Hs.611279	NR_120324		LOC101927286	-	uncharacterized LOC101927286	ncRNA
19-PTNLD28-TUMOR_peak_56853	chr2	169769431	169769614	+	7.82273	NA	Intergenic	Intergenic	11772	NM_001081686	57818	Hs.283963	NM_021176		G6PC2	IGRP	glucose-6-phosphatase, catalytic, 2	protein-coding
19-PTNLD28-TUMOR_peak_97837	chr8	27469004	27469470	+	7.82273	NA	promoter-TSS (NR_045494)	promoter-TSS (NR_045494)	31	NR_045494	1191	Hs.436657	NM_001831	HPRD:01706	CLU	APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2	clusterin	protein-coding
19-PTNLD28-TUMOR_peak_81344	chr5	99842131	99842224	+	7.82273	NA	Intergenic	L1MEf|LINE|L1	-28947	NM_198507	345757	Hs.356108	NM_198507	HPRD:18260	FAM174A	TMEM157|UNQ1912	family with sequence similarity 174, member A	protein-coding
19-PTNLD28-TUMOR_peak_54455	chr2	100161665	100161768	+	7.82273	NA	Intergenic	Intergenic	-55236	NM_001037872	51455	Hs.443077	NM_016316	HPRD:16202	REV1	REV1L	REV1, polymerase (DNA directed)	protein-coding
19-PTNLD28-TUMOR_peak_31171	chr14	72315053	72315252	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	-83665	NM_001204423	9628	Hs.509872	NM_004296	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
19-PTNLD28-TUMOR_peak_64192	chr22	17084872	17084960	+	7.82273	NA	intron (NR_001591, intron 1 of 8)	intron (NR_001591, intron 1 of 8)	2115	NR_001591	387590	Hs.474116	NR_001591		TPTEP1	psiTPTE22	transmembrane phosphatase with tensin homology pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_102779	chr9	34437504	34437636	+	7.82273	NA	intron (NM_001184945, intron 1 of 5)	MIRb|SINE|MIR	20998	NM_147202	203259	Hs.493771	NM_147202	HPRD:12950	FAM219A	C9orf25|bA573M23.5	family with sequence similarity 219, member A	protein-coding
19-PTNLD28-TUMOR_peak_15161	chr10	99995744	99995911	+	7.82273	NA	exon (NM_001256621, exon 7 of 8)	exon (NM_001256621, exon 7 of 8)	32180	NM_032211	84171	Hs.306814	NM_032211	HPRD:09538	LOXL4	LOXC	lysyl oxidase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_85267	chr6	10370262	10370409	+	7.82273	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-42216	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31849	chr14	95107215	95107321	+	7.82273	NA	non-coding (NR_015340, exon 1 of 5)	non-coding (NR_015340, exon 1 of 5)	206	NR_015340	388007	Hs.527795	NR_015340	HPRD:18039	SERPINA13P	SERPINA13|UNQ6121	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_11141	chr1	236332226	236332321	+	7.82273	NA	intron (NM_003272, intron 2 of 6)	intron (NM_003272, intron 2 of 6)	26441	NM_003272	7107	Hs.498160	NM_003272	HPRD:06878	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
19-PTNLD28-TUMOR_peak_90176	chr6	155838562	155838670	+	7.82273	NA	Intergenic	MER41G|LTR|ERV1	-61579	NM_015718	50508	Hs.247776	NM_015718	HPRD:06165	NOX3	GP91-3|MOX-2	NADPH oxidase 3	protein-coding
19-PTNLD28-TUMOR_peak_38138	chr16	58597296	58597401	+	7.82273	NA	intron (NR_049763, intron 16 of 49)	Tigger3a|DNA|TcMar-Tigger	-3513	NR_002980	677830	Hs.677515	NR_002980		SNORA76A	ACA50|SNORA50	small nucleolar RNA, H/ACA box 76A	snoRNA
19-PTNLD28-TUMOR_peak_88856	chr6	98637515	98637866	+	7.82273	NA	Intergenic	MER31B|LTR|ERV1	165283	NR_031579	100302164		NR_031579	miRBase:MI0003939	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
19-PTNLD28-TUMOR_peak_89733	chr6	141902204	141902526	+	7.82273	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	507571	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_25413	chr12	79438914	79439028	+	7.82273	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-462	NM_001135806	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
19-PTNLD28-TUMOR_peak_14671	chr10	85965421	85965590	+	7.82273	NA	intron (NM_033100, intron 9 of 16)	intron (NM_033100, intron 9 of 16)	11114	NM_033100	92211	Hs.137556	NM_033100	HPRD:15106	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin-related family member 1	protein-coding
19-PTNLD28-TUMOR_peak_14021	chr10	71038419	71038523	+	7.82273	NA	intron (NM_033497, intron 1 of 20)	intron (NM_033497, intron 1 of 20)	8715	NM_033498	3098	Hs.370365	NM_000188	HPRD:00809	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_36335	chr16	12052944	12053107	+	7.82273	NA	Intergenic	Intergenic	-5939	NM_001192	608	Hs.2556	NM_001192	HPRD:00144	TNFRSF17	BCM|BCMA|CD269|TNFRSF13A	tumor necrosis factor receptor superfamily, member 17	protein-coding
19-PTNLD28-TUMOR_peak_53871	chr2	86289289	86289418	+	7.82273	NA	intron (NM_015425, intron 14 of 33)	intron (NM_015425, intron 14 of 33)	-38362	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
19-PTNLD28-TUMOR_peak_15601	chr10	112136298	112136413	+	7.82273	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-71648	NM_005871	10285	Hs.632093	NM_005871		SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_106338	chr9	131965159	131965287	+	7.82273	NA	Intergenic	CpG	-24683	NM_203434	389792	Hs.529857	NM_203434	HPRD:17128	IER5L	bA247A12.2	immediate early response 5-like	protein-coding
19-PTNLD28-TUMOR_peak_31480	chr14	78849350	78849468	+	7.82273	NA	intron (NR_073547, intron 4 of 20)	intron (NR_073547, intron 4 of 20)	-20665	NM_004796	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_76667	chr4	113819994	113820200	+	7.82273	NA	intron (NM_001127493, intron 1 of 46)	intron (NM_001127493, intron 1 of 46)	80858	NM_001127493	287	Hs.620557	NM_001148	HPRD:00110	ANK2	ANK-2|LQT4|brank-2	ankyrin 2, neuronal	protein-coding
19-PTNLD28-TUMOR_peak_28273	chr13	51857687	51857786	+	7.82273	NA	3' UTR (NM_001242312, exon 4 of 4)	3' UTR (NM_001242312, exon 4 of 4)	-57432	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3	protein-coding
19-PTNLD28-TUMOR_peak_22418	chr12	1441683	1441782	+	7.82273	NA	intron (NM_001301248, intron 14 of 18)	intron (NM_001301248, intron 14 of 18)	-167925	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
19-PTNLD28-TUMOR_peak_97187	chr8	11801263	11801381	+	7.82273	NA	Intergenic	Intergenic	30786	NM_001033018	613210	Hs.558285	NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin, beta 136	protein-coding
19-PTNLD28-TUMOR_peak_25276	chr12	71554571	71554683	+	7.82273	NA	Intergenic	Intergenic	-2848	NM_004616	7103	Hs.170563	NM_004616	HPRD:02865	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
19-PTNLD28-TUMOR_peak_81822	chr5	123008921	123009097	+	7.82273	NA	Intergenic	Intergenic	127898	NM_004384	1456	Hs.129206	NM_004384	HPRD:05034	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1, gamma 3	protein-coding
19-PTNLD28-TUMOR_peak_92198	chr7	43174871	43174965	+	7.82273	NA	intron (NM_015052, intron 2 of 29)	MLT1J|LTR|ERVL-MaLR	-15576	NR_037508	100500829		NR_037508		MIR3943	-	microRNA 3943	ncRNA
19-PTNLD28-TUMOR_peak_109159	chrX	109529466	109529554	+	7.82273	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	31870	NM_015365	9949	Hs.656243	NM_015365	HPRD:02182	AMMECR1	AMMERC1	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_78793	chr5	8247949	8248044	+	7.82273	NA	Intergenic	Intergenic	209681	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
19-PTNLD28-TUMOR_peak_45455	chr18	43271369	43271458	+	7.82273	NA	Intergenic	Intergenic	-32679	NM_001128588	6563	Hs.101307	NM_015865	HPRD:00195	SLC14A1	HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	protein-coding
19-PTNLD28-TUMOR_peak_15789	chr10	116408240	116408349	+	7.82273	NA	intron (NM_001003407, intron 1 of 21)	L1MB7|LINE|L1	9764	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_8539	chr1	179853021	179853133	+	7.82273	NA	intron (NM_001267578, intron 1 of 9)	intron (NM_001267578, intron 1 of 9)	1900	NM_001267578	26092	Hs.496459	NM_015602	HPRD:13958	TOR1AIP1	LAP1|LAP1B	torsin A interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50256	chr19	54533314	54533455	+	7.82273	NA	Intergenic	LTR78|LTR|ERV1	33823	NM_198481	284415	Hs.444431	NM_198481	HPRD:15615	VSTM1	SIRL-1|SIRL1|UNQ3033	V-set and transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_34407	chr15	73194908	73194996	+	7.82273	NA	Intergenic	Intergenic	-118826	NM_031284	83440	Hs.654636	NM_031284	HPRD:12429	ADPGK	2610017G09Rik|ADP-GK	ADP-dependent glucokinase	protein-coding
19-PTNLD28-TUMOR_peak_29002	chr13	109168263	109168503	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-80117	NM_015011	23026	Hs.656587	NM_015011	HPRD:14795	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
19-PTNLD28-TUMOR_peak_58744	chr2	230309790	230309893	+	7.82273	NA	intron (NM_139072, intron 8 of 12)	intron (NM_139072, intron 8 of 12)	-173784	NM_001100818	55022	Hs.745038	NM_017933	HPRD:07944	PID1	NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76218	chr4	89282490	89282808	+	7.82273	NA	Intergenic	LTR12D|LTR|ERV1	-17242	NM_001165136	55008	Hs.529317	NM_017912	HPRD:13647	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
19-PTNLD28-TUMOR_peak_102608	chr9	30967637	30967765	+	7.82273	NA	Intergenic	L1MEc|LINE|L1	-559249	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_9502	chr1	204176347	204176435	+	7.82273	NA	intron (NM_198447, intron 1 of 4)	intron (NM_198447, intron 1 of 4)	6829	NM_198447	127845	Hs.532401	NM_198447	HPRD:13465	GOLT1A	CGI-141|GOT1|HMFN1187|YMR292W	golgi transport 1A	protein-coding
19-PTNLD28-TUMOR_peak_50720	chr2	176958	177105	+	7.82273	NA	Intergenic	Intergenic	79309	NM_001282687	26751	Hs.515951	NM_015677	HPRD:15336	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_12772	chr10	31270068	31270237	+	7.82273	NA	intron (NM_001143767, intron 1 of 5)	intron (NM_001143767, intron 1 of 5)	18294	NM_001143769	220929	Hs.660642	NM_182755	HPRD:11247	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
19-PTNLD28-TUMOR_peak_109256	chrX	117091226	117091335	+	7.82273	NA	intron (NM_001168303, intron 1 of 6)	intron (NM_001168303, intron 1 of 6)	16421	NM_033495	90293	Hs.348262	NM_033495	HPRD:06461	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
19-PTNLD28-TUMOR_peak_69493	chr3	101944364	101944488	+	7.82273	NA	Intergenic	Intergenic	-209433	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_82697	chr5	140625041	140625247	+	7.82273	NA	TTS (NR_001282)	TTS (NR_001282)	227	NM_018935	56121	Hs.130757	NM_018935	HPRD:06959	PCDHB15	PCDH-BETA15	protocadherin beta 15	protein-coding
19-PTNLD28-TUMOR_peak_59820	chr20	11305779	11305877	+	7.82273	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-51797	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_63270	chr21	35255992	35256105	+	7.82273	NA	intron (NM_003024, intron 36 of 39)	intron (NM_003024, intron 36 of 39)	32110	NM_001697	539	Hs.409140	NM_001697	HPRD:02899	ATP5O	ATPO|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
19-PTNLD28-TUMOR_peak_1144	chr1	17354062	17354275	+	7.82273	NA	intron (NM_003000, intron 5 of 7)	intron (NM_003000, intron 5 of 7)	-15701	NM_001141974	23400	Hs.128866	NM_022089	HPRD:13677	ATP13A2	CLN12|HSA9947|KRPPD|PARK9	ATPase type 13A2	protein-coding
19-PTNLD28-TUMOR_peak_75350	chr4	55083844	55084013	+	7.82273	NA	Intergenic	Intergenic	-11336	NM_006206	5156	Hs.74615	NM_006206	HPRD:01429	PDGFRA	CD140A|PDGFR-2|PDGFR2|RHEPDGFRA	platelet-derived growth factor receptor, alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_99210	chr8	74292435	74292530	+	7.82273	NA	Intergenic	Intergenic	-23786	NR_125388	101926926	Hs.640090	NR_125388		LOC101926926	-	uncharacterized LOC101926926	ncRNA
19-PTNLD28-TUMOR_peak_57094	chr2	176158677	176158802	+	7.82273	NA	Intergenic	MER21C|LTR|ERVL	-112249	NM_001190329	518	Hs.429	NM_001689		ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)	protein-coding
19-PTNLD28-TUMOR_peak_59253	chr2	241484319	241484537	+	7.82273	NA	intron (NM_001282771, intron 4 of 17)	L1PA3|LINE|L1	13010	NM_001282780	51281	Hs.656615	NM_016552	HPRD:10646	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59852	chr20	12787396	12787484	+	7.82273	NA	Intergenic	L1HS|LINE|L1	130171	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
19-PTNLD28-TUMOR_peak_20774	chr11	97232848	97233058	+	7.82273	NA	Intergenic	Intergenic	257942	NR_107016	102465857		NR_107016		MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
19-PTNLD28-TUMOR_peak_56663	chr2	162107502	162107681	+	7.82273	NA	non-coding (NR_110593, exon 2 of 4)	non-coding (NR_110593, exon 2 of 4)	3563	NR_110593	101929512	Hs.666488	NR_110593		LOC101929512	-	uncharacterized LOC101929512	ncRNA
19-PTNLD28-TUMOR_peak_54560	chr2	102090506	102090770	+	7.82273	NA	intron (NM_001145664, intron 1 of 11)	CpG	527	NM_001145664	731220	Hs.662488	NM_207403	ENSG00000196460	RFX8	-	RFX family member 8, lacking RFX DNA binding domain	protein-coding
19-PTNLD28-TUMOR_peak_104499	chr9	92731605	92731720	+	7.82273	NA	promoter-TSS (NR_109791)	promoter-TSS (NR_109791)	-36	NR_109791	101927847	Hs.584312	NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
19-PTNLD28-TUMOR_peak_77357	chr4	142998388	142998521	+	7.82273	NA	intron (NM_001101669, intron 25 of 25)	intron (NM_001101669, intron 25 of 25)	440705	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_8520	chr1	179407692	179407784	+	7.82273	NA	intron (NR_073544, intron 15 of 25)	HERVK3-int|LTR|ERVK	72631	NR_073544	126859	Hs.658505	NM_144696	HPRD:08740	AXDND1	C1orf125	axonemal dynein light chain domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_101871	chr9	225303	225434	+	7.82273	NA	intron (NM_203447, intron 1 of 47)	intron (NM_203447, intron 1 of 47)	-9475	NM_152569	157983	Hs.190877	NM_152569	HPRD:12971	C9orf66	-	chromosome 9 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_24896	chr12	61845926	61846168	+	7.82273	NA	Intergenic	L2c|LINE|L2	740573	NM_178539	338811	Hs.269745	NM_178539	HPRD:16876	FAM19A2	TAFA-2|TAFA2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	protein-coding
19-PTNLD28-TUMOR_peak_2261	chr1	34543722	34543965	+	7.82273	NA	intron (NM_052896, intron 2 of 69)	intron (NM_052896, intron 2 of 69)	87032	NM_001281956	114784	Hs.656915	NM_052896	HPRD:13094	CSMD2	dJ1007G16.1|dJ1007G16.2|dJ947L8.1	CUB and Sushi multiple domains 2	protein-coding
19-PTNLD28-TUMOR_peak_39701	chr17	2319474	2319576	+	7.82273	NA	promoter-TSS (NR_028335)	promoter-TSS (NR_028335)	-795	NR_028335	284009	Hs.632244	NM_001025459	HPRD:18767	LOC284009	-	uncharacterized LOC284009	ncRNA
19-PTNLD28-TUMOR_peak_65231	chr22	33522988	33523092	+	7.82273	NA	Intergenic	Intergenic	-68663	NM_001135774	8224	Hs.608750	NM_003490	HPRD:04083	SYN3	-	synapsin III	protein-coding
19-PTNLD28-TUMOR_peak_90616	chr6	169284848	169284938	+	7.82273	NA	Intergenic	CpG	369316	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_14200	chr10	73086443	73086608	+	7.82273	NA	intron (NR_033414, intron 2 of 3)	intron (NR_033414, intron 2 of 3)	7515	NM_018344	55315	Hs.438419	NM_018344	HPRD:11570	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 (equilibrative nucleoside transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_109624	chrX	138774374	138774509	+	7.82273	NA	intron (NM_001171876, intron 1 of 28)	CpG	15940	NM_001099855	4168	Hs.387262	NM_005369	HPRD:02406	MCF2	ARHGEF21|DBL	MCF.2 cell line derived transforming sequence	protein-coding
19-PTNLD28-TUMOR_peak_105081	chr9	106056891	106056981	+	7.82273	NA	intron (NR_121578, intron 3 of 9)	LTR13A|LTR|ERVK	30379	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
19-PTNLD28-TUMOR_peak_10094	chr1	219333463	219333571	+	7.82273	NA	intron (NR_038845, intron 1 of 4)	intron (NR_038845, intron 1 of 4)	13613	NR_038845	643723	Hs.519774	NR_038845		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_80772	chr5	75579571	75579731	+	7.82273	NA	intron (NM_001297716, intron 4 of 12)	intron (NM_001297716, intron 4 of 12)	-119429	NM_006633	10788	Hs.291030	NM_006633	HPRD:09253	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23090	chr12	12503107	12503385	+	7.82273	NA	promoter-TSS (NM_018050)	promoter-TSS (NM_018050)	-77	NM_018050	54682	Hs.591145	NM_018050	HPRD:10067	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27264	chr12	132587372	132587556	+	7.82273	NA	intron (NR_003290, intron 3 of 9)	LTR13A|LTR|ERVK	18636	NR_003290	347918	Hs.122115	NM_182613	HPRD:13413	EP400NL	-	EP400 N-terminal like	pseudo
19-PTNLD28-TUMOR_peak_25678	chr12	96095593	96095768	+	7.82273	NA	intron (NM_021229, intron 5 of 9)	intron (NM_021229, intron 5 of 9)	52649	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_78275	chr4	184761534	184761662	+	7.82273	NA	Intergenic	Intergenic	-64911	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_58769	chr2	231288898	231289088	+	7.82273	NA	intron (NM_001206702, intron 2 of 14)	LTR43B|LTR|ERV1	7522	NM_001206704	6672	Hs.369056	NM_003113	HPRD:06844	SP100	lysp100b	SP100 nuclear antigen	protein-coding
19-PTNLD28-TUMOR_peak_99976	chr8	106362408	106362508	+	7.82273	NA	intron (NM_012082, intron 1 of 7)	intron (NM_012082, intron 1 of 7)	31311	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_15791	chr10	116424000	116424153	+	7.82273	NA	intron (NM_001003407, intron 1 of 21)	L2c|LINE|L2	-6018	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25999	chr12	106214651	106214810	+	7.82273	NA	Intergenic	Intergenic	114178	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_28298	chr13	52419102	52419478	+	7.82273	NA	promoter-TSS (NR_027048)	promoter-TSS (NR_027048)	-4	NR_027047	283521	Hs.649896	NM_178515		LINC00282	NCRNA00282	long intergenic non-protein coding RNA 282	ncRNA
19-PTNLD28-TUMOR_peak_14823	chr10	90925814	90925937	+	7.82273	NA	Intergenic	Intergenic	41196	NM_003956	9023	Hs.47357	NM_003956	HPRD:05183	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
19-PTNLD28-TUMOR_peak_22623	chr12	4996387	4996480	+	7.82273	NA	Intergenic	L1MB3|LINE|L1	-22640	NM_000217	3736	Hs.416139	NM_000217	HPRD:08885	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	protein-coding
19-PTNLD28-TUMOR_peak_80210	chr5	61649987	61650099	+	7.82273	NA	intron (NM_001243952, intron 7 of 20)	intron (NM_001243952, intron 7 of 20)	48054	NM_004520	3796	Hs.558351	NM_004520		KIF2A	CDCBM3|HK2|KIF2	kinesin heavy chain member 2A	protein-coding
19-PTNLD28-TUMOR_peak_107893	chrX	31351781	31351891	+	7.82273	NA	intron (NM_004022, intron 18 of 33)	intron (NM_004022, intron 18 of 33)	-66812	NM_004016	1756	Hs.495912	NM_000109	HPRD:02303	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
19-PTNLD28-TUMOR_peak_14518	chr10	80383806	80383938	+	7.82273	NA	Intergenic	Intergenic	356787	NR_073447	414243	Hs.55047	NR_073447	ENSG00000227136	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
19-PTNLD28-TUMOR_peak_75691	chr4	75543966	75544064	+	7.82273	NA	Intergenic	L2a|LINE|L2	63424	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_8076	chr1	168908907	168909003	+	7.82273	NA	intron (NR_104091, intron 3 of 4)	intron (NR_104091, intron 3 of 4)	147288	NR_104091	101978719	Hs.517849	NR_104091		LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
19-PTNLD28-TUMOR_peak_20420	chr11	85929646	85929735	+	7.82273	NA	Intergenic	Intergenic	-26116	NM_152991	8726	Hs.503510	NM_003797	HPRD:09343	EED	HEED|WAIT1	embryonic ectoderm development	protein-coding
19-PTNLD28-TUMOR_peak_30555	chr14	58968083	58968191	+	7.82273	NA	intron (NM_001244191, intron 27 of 30)	intron (NM_001244191, intron 27 of 30)	61738	NM_001244193	9786	Hs.232532	NM_014749	HPRD:11092	KIAA0586	Talpid3	KIAA0586	protein-coding
19-PTNLD28-TUMOR_peak_65825	chr22	43927007	43927121	+	7.82273	NA	intron (NM_198856, intron 28 of 29)	MIRc|SINE|MIR	14930	NR_046563	100874197	Hs.627997	NR_046563	ENSG00000223843	EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35257	chr15	91892159	91892278	+	7.82273	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-114351	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	LOC101926928	-	uncharacterized LOC101926928	ncRNA
19-PTNLD28-TUMOR_peak_9824	chr1	207903842	207904095	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	-21415	NM_002389	4179	Hs.510402	NM_002389	HPRD:00406	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule, complement regulatory protein	protein-coding
19-PTNLD28-TUMOR_peak_23149	chr12	13139086	13139176	+	7.82273	NA	intron (NM_015987, intron 3 of 3)	intron (NM_015987, intron 3 of 3)	6360	NR_038920	100506314	Hs.659383	NR_038920	ENSG00000247498	LOC100506314	-	uncharacterized LOC100506314	ncRNA
19-PTNLD28-TUMOR_peak_25833	chr12	102250933	102251031	+	7.82273	NA	Intergenic	Intergenic	-20123	NM_018370	55332	Hs.525634	NM_018370	HPRD:07743	DRAM1	DRAM	DNA-damage regulated autophagy modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_27817	chr13	35059910	35060339	+	7.82273	NA	intron (NR_047036, intron 2 of 2)	L1HS|LINE|L1	154698	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA
19-PTNLD28-TUMOR_peak_75321	chr4	54195397	54195530	+	7.82273	NA	intron (NM_152540, intron 2 of 8)	L1PA2|LINE|L1	36779	NM_152540	152579	Hs.302287	NM_152540	HPRD:15300	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_93988	chr7	93918428	93918561	+	7.82273	NA	Intergenic	Intergenic	-105379	NM_000089	1278	Hs.489142	NM_000089	HPRD:00363	COL1A2	OI4	collagen, type I, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_30092	chr14	45831083	45831209	+	7.82273	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-108541	NM_018353	55320	Hs.732769	NM_018353	HPRD:12629	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63005	chr21	28591469	28591721	+	7.82273	NA	Intergenic	Intergenic	-252156	NM_007038	11096	Hs.58324	NM_007038	HPRD:05420	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	ADAM metallopeptidase with thrombospondin type 1 motif, 5	protein-coding
19-PTNLD28-TUMOR_peak_109009	chrX	102611384	102611475	+	7.82273	NA	promoter-TSS (NM_016303)	promoter-TSS (NM_016303)	49	NM_001006613	51186	Hs.533287	NM_016303	HPRD:06621	WBP5	TCEAL9|WEX6	WW domain binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_4073	chr1	64578103	64578211	+	7.82273	NA	promoter-TSS (NR_110666)	promoter-TSS (NR_110666)	-269	NR_110666	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109380	chrX	124863651	124863941	+	7.82273	NA	Intergenic	HERVL-int|LTR|ERVL	-379949	NR_110409	101928495	Hs.545998	NR_110409	ENSG00000237208	LOC101928495	-	uncharacterized LOC101928495	ncRNA
19-PTNLD28-TUMOR_peak_17328	chr11	13666989	13667106	+	7.82273	NA	Intergenic	Intergenic	-23159	NM_032228	84188	Hs.501991	NM_032228	HPRD:14724	FAR1	MLSTD2|SDR10E1	fatty acyl CoA reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_107777	chrX	21945090	21945234	+	7.82273	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-13529	NM_004595	6611	Hs.724874	NM_004595	HPRD:02115	SMS	MRSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
19-PTNLD28-TUMOR_peak_12829	chr10	32499808	32499967	+	7.82273	NA	Intergenic	Intergenic	136089	NM_001272019	80314	Hs.167805	NM_025209	HPRD:09941	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_67254	chr3	26432032	26432222	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	-232173	NM_052953	116135	Hs.517868	NM_052953	HPRD:14318	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_108879	chrX	87061093	87061342	+	7.82273	NA	Intergenic	MER4D|LTR|ERV1	288502	NM_057162	56062	Hs.49075	NM_019117	HPRD:02283	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_27431	chr13	22677950	22678069	+	7.82273	NA	Intergenic	Intergenic	-106415	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_74551	chr4	12905519	12905618	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	580421	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_99099	chr8	69169172	69169435	+	7.82273	NA	Intergenic	Intergenic	-73654	NM_052958	116328	Hs.491941	NM_052958	HPRD:18281	C8orf34	VEST-1|VEST1	chromosome 8 open reading frame 34	protein-coding
19-PTNLD28-TUMOR_peak_36852	chr16	23550050	23550168	+	7.82273	NA	intron (NR_003501, intron 3 of 9)	AluJo|SINE|Alu	18587	NR_003501	124454	Hs.620541	NM_001083614	ENSG00000103356	EARS2	COXPD12|MSE1	glutamyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_108808	chrX	76357997	76358102	+	7.82273	NA	Intergenic	L1PA4|LINE|L1	-123092	NR_110406	101928469	Hs.640805	NR_110400		MIR325HG	MIR384HG	MIR325 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_28834	chr13	100056658	100056780	+	7.82273	NA	intron (NR_039765, intron 1 of 4)	intron (NR_039765, intron 1 of 4)	1835	NR_039765	100616144		NR_039765		MIR548AN	-	microRNA 548an	ncRNA
19-PTNLD28-TUMOR_peak_53204	chr2	67032404	67032534	+	7.82273	NA	Intergenic	Intergenic	-99099	NR_110169	101060019	Hs.116425	NR_110169		LOC101060019	-	uncharacterized LOC101060019	ncRNA
19-PTNLD28-TUMOR_peak_8893	chr1	186085761	186085872	+	7.82273	NA	intron (NM_031935, intron 75 of 106)	intron (NM_031935, intron 75 of 106)	-179589	NM_001127709	10216	Hs.647723	NM_005807	HPRD:05047	PRG4	CACP|HAPO|JCAP|MSF|SZP|bG174L6.2	proteoglycan 4	protein-coding
19-PTNLD28-TUMOR_peak_89644	chr6	138145344	138145657	+	7.82273	NA	non-coding (NR_049793, exon 4 of 4)	non-coding (NR_049793, exon 4 of 4)	-42825	NM_001270508	7128	Hs.211600	NM_006290	HPRD:01857	TNFAIP3	A20|OTUD7C|TNFA1P2	tumor necrosis factor, alpha-induced protein 3	protein-coding
19-PTNLD28-TUMOR_peak_108589	chrX	67416914	67417108	+	7.82273	NA	intron (NM_002547, intron 12 of 24)	intron (NM_002547, intron 12 of 24)	236288	NM_002547	4983	Hs.128824	NM_002547	HPRD:02130	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
19-PTNLD28-TUMOR_peak_89107	chr6	111426911	111427028	+	7.82273	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	18188	NM_018593	117247	Hs.591327	NM_018593	HPRD:09613	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 (aromatic amino acid transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_81865	chr5	124258894	124259002	+	7.82273	NA	Intergenic	Intergenic	-113576	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA
19-PTNLD28-TUMOR_peak_110129	chrY	4226865	4226953	+	7.82273	NA	Intergenic	HERVH-int|LTR|ERV1	-641358	NM_032971	83259	Hs.661308	NM_032971	HPRD:11847	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_103651	chr9	70992734	70992840	+	7.82273	NA	intron (NM_021965, intron 1 of 10)	intron (NM_021965, intron 1 of 10)	-20005	NR_015423	572558	Hs.552819	NR_015423	ENSG00000224958	PGM5-AS1	FAM233A	PGM5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87509	chr6	42499915	42500008	+	7.82273	NA	Intergenic	Intergenic	-31799	NM_015255	23304	Hs.529925	NM_015255	HPRD:09853	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
19-PTNLD28-TUMOR_peak_67503	chr3	36598965	36599070	+	7.82273	NA	Intergenic	Intergenic	177038	NM_003149	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_21666	chr11	120823480	120823705	+	7.82273	NA	exon (NM_014619, exon 15 of 21)	exon (NM_014619, exon 15 of 21)	-71211	NM_001130047	219899	Hs.504136	NM_152715		TBCEL	El|LRRC35	tubulin folding cofactor E-like	protein-coding
19-PTNLD28-TUMOR_peak_21046	chr11	108861072	108861206	+	7.82273	NA	Intergenic	MLT2B4|LTR|ERVL	325387	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_89509	chr6	133873203	133873381	+	7.82273	NA	intron (NR_109982, intron 5 of 8)	intron (NR_109982, intron 5 of 8)	-268993	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
19-PTNLD28-TUMOR_peak_4521	chr1	82735293	82735437	+	7.82273	NA	Intergenic	Intergenic	469283	NM_012302	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_15527	chr10	107529655	107529845	+	7.82273	NA	intron (NR_120625, intron 3 of 3)	LTR16A2|LTR|ERVL	50341	NR_120625	101927549	Hs.556885	NR_120625	ENSG00000229466	LOC101927549	-	uncharacterized LOC101927549	ncRNA
19-PTNLD28-TUMOR_peak_46140	chr18	61662074	61662166	+	7.82273	NA	Intergenic	MER76-int|LTR|ERVL	24857	NM_198833	5271	Hs.368077	NM_002640	HPRD:03412	SERPINB8	CAP2|PI8	serpin peptidase inhibitor, clade B (ovalbumin), member 8	protein-coding
19-PTNLD28-TUMOR_peak_110137	chrY	6011175	6011263	+	7.82273	NA	Intergenic	HERVH-int|LTR|ERV1	100432	NR_003593	100101121	Hs.522846	NR_003593		TTTY23B	TTTY23	testis-specific transcript, Y-linked 23B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_22280	chr11	133691742	133691854	+	7.82273	NA	Intergenic	Intergenic	-11527	NR_120444	646522	Hs.560000	NR_120444		LOC646522	-	uncharacterized LOC646522	ncRNA
19-PTNLD28-TUMOR_peak_49037	chr19	40431761	40431908	+	7.82273	NA	intron (NM_003890, intron 2 of 35)	intron (NM_003890, intron 2 of 35)	8699	NM_003890	8857	Hs.111732	NM_003890	HPRD:10956	FCGBP	FC(GAMMA)BP	Fc fragment of IgG binding protein	protein-coding
19-PTNLD28-TUMOR_peak_69671	chr3	109450886	109450979	+	7.82273	NA	Intergenic	Intergenic	322095	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_63080	chr21	30744830	30744920	+	7.82273	NA	promoter-TSS (NR_046564)	promoter-TSS (NR_046564)	54	NR_046564	100874322	Hs.326404	NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_100266	chr8	118993555	118993651	+	7.82273	NA	intron (NM_000127, intron 1 of 10)	MamRep434|DNA|TcMar-Tigger	130455	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_49465	chr19	46611929	46612017	+	7.82273	NA	Intergenic	HERVH-int|LTR|ERV1	15958	NM_207393	388555	Hs.365496	NM_207393	HPRD:17140	IGFL3	UNQ483	IGF-like family member 3	protein-coding
19-PTNLD28-TUMOR_peak_33622	chr15	53433047	53433174	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	-350901	NM_004498	3175	Hs.658573	NM_004498		ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_12472	chr10	24925197	24925312	+	7.82273	NA	intron (NM_020824, intron 4 of 25)	MER5A|DNA|hAT-Charlie	87343	NM_020824	57584	Hs.524195	NM_020824	HPRD:06445	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
19-PTNLD28-TUMOR_peak_26537	chr12	117919442	117919596	+	7.82273	NA	intron (NM_173598, intron 16 of 19)	intron (NM_173598, intron 16 of 19)	-119912	NM_001204218	4842	Hs.654410	NM_000620	HPRD:01226	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_70003	chr3	118347684	118347814	+	7.82273	NA	Intergenic	Intergenic	-314174	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75700	chr4	75648586	75648716	+	7.82273	NA	Intergenic	L1HS|LINE|L1	71231	NM_001729	685	Hs.710156	NM_001729		BTC	-	betacellulin	protein-coding
19-PTNLD28-TUMOR_peak_88022	chr6	53395271	53395392	+	7.82273	NA	intron (NM_001197115, intron 1 of 14)	intron (NM_001197115, intron 1 of 14)	14596	NM_001197115	2729	Hs.654465	NM_001498	HPRD:06032	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase, catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_20377	chr11	84101536	84101656	+	7.82273	NA	intron (NM_001364, intron 2 of 22)	intron (NM_001364, intron 2 of 22)	-73214	NM_001206769	1740	Hs.367656	NM_001364	HPRD:04663	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_85926	chr6	23454461	23454551	+	7.82273	NA	Intergenic	Intergenic	-671908	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_92679	chr7	55980487	55980582	+	7.82273	NA	intron (NM_182633, intron 1 of 3)	intron (NM_182633, intron 1 of 3)	203	NM_182633	349075	Hs.660834	NM_182633		ZNF713	-	zinc finger protein 713	protein-coding
19-PTNLD28-TUMOR_peak_37799	chr16	51278044	51278203	+	7.82273	NA	Intergenic	Intergenic	-92940	NM_002968	6299	Hs.135787	NM_002968	HPRD:03742	SALL1	HEL-S-89|HSAL1|Sal-1|TBS|ZNF794	spalt-like transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_80252	chr5	64198112	64198262	+	7.82273	NA	intron (NM_005869, intron 11 of 13)	Tigger3b|DNA|TcMar-Tigger	133442	NM_001297644	10283	Hs.371372	NM_005869	HPRD:11541	CWC27	NY-CO-10|SDCCAG10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_9018	chr1	194674415	194674548	+	7.82273	NA	Intergenic	Intergenic	1400606	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_76569	chr4	110393648	110393774	+	7.82273	NA	intron (NM_001300813, intron 3 of 24)	intron (NM_001300813, intron 3 of 24)	-38738	NR_039978	100533182	Hs.518927	NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_7454	chr1	158045040	158045171	+	7.82273	NA	intron (NM_001286349, intron 1 of 12)	intron (NM_001286349, intron 1 of 12)	65325	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_22987	chr12	9679581	9679669	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-78857	NR_033399	440081	Hs.447869	NM_004400	ENSG00000214826	DDX12P	CHLR2|DDX12	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96943	chr8	6938115	6938221	+	7.82273	NA	Intergenic	LTR5A|LTR|ERVK	-23909	NM_021010	1670	Hs.655233	NM_021010	HPRD:02720	DEFA5	DEF5|HD-5	defensin, alpha 5, Paneth cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_30496	chr14	57461866	57462098	+	7.82273	NA	Intergenic	Intergenic	182081	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_90544	chr6	167929398	167929536	+	7.82273	NA	Intergenic	Intergenic	-131469	NM_004610	6953	Hs.351	NM_004610		TCP10	TCP10A	t-complex 10	protein-coding
19-PTNLD28-TUMOR_peak_12339	chr10	22278644	22278764	+	7.82273	NA	intron (NM_022365, intron 1 of 11)	intron (NM_022365, intron 1 of 11)	13946	NM_022365	64215	Hs.499000	NM_022365	HPRD:09922	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ (Hsp40) homolog, subfamily C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_36505	chr16	15670305	15670398	+	7.82273	NA	intron (NM_033201, intron 3 of 5)	intron (NM_033201, intron 3 of 5)	34601	NR_106761	102465252		NR_106761		MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
19-PTNLD28-TUMOR_peak_44605	chr18	11827846	11827934	+	7.82273	NA	intron (NM_001261443, intron 6 of 12)	AluY|SINE|Alu	-23499	NM_020412	57132	Hs.656244	NM_020412	HPRD:12106	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_69096	chr3	74259954	74260119	+	7.82273	NA	Intergenic	Intergenic	310307	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
19-PTNLD28-TUMOR_peak_75435	chr4	57560238	57560483	+	7.82273	NA	Intergenic	SVA_D|Other|Other	-12488	NM_032495	84525	Hs.619396	NM_032495	HPRD:06280	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
19-PTNLD28-TUMOR_peak_45831	chr18	52613459	52613762	+	7.82273	NA	intron (NM_025214, intron 1 of 11)	intron (NM_025214, intron 1 of 11)	11669	NM_001143829	80323	Hs.120790	NM_025214	HPRD:18034	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
19-PTNLD28-TUMOR_peak_21914	chr11	125793085	125793188	+	7.82273	NA	TTS (NM_013264)	TTS (NM_013264)	18875	NM_013264	29118	Hs.420263	NM_013264	HPRD:06367	DDX25	GRTH	DEAD (Asp-Glu-Ala-Asp) box helicase 25	protein-coding
19-PTNLD28-TUMOR_peak_69982	chr3	116738052	116738167	+	7.82273	NA	Intergenic	Intergenic	97831	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_57800	chr2	202023201	202023323	+	7.82273	NA	promoter-TSS (NR_040030)	promoter-TSS (NR_040030)	-747	NR_040030	65072	Hs.664613	NR_040030	ENSG00000226312	CFLAR-AS1	ALS2CR10	CFLAR antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8755	chr1	183380351	183380488	+	7.82273	NA	intron (NM_015039, intron 1 of 10)	intron (NM_015039, intron 1 of 10)	7215	NM_015039	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_17673	chr11	23530726	23530870	+	7.82273	NA	Intergenic	L2|LINE|L2	-90062	NR_107021	102465860		NR_107021		MIR8054	hsa-mir-8054	microRNA 8054	ncRNA
19-PTNLD28-TUMOR_peak_101984	chr9	2859928	2860081	+	7.82273	NA	Intergenic	L3|LINE|CR1	-15874	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_4781	chr1	90190403	90190503	+	7.82273	NA	Intergenic	Intergenic	91809	NM_032270	84230	Hs.412836	NM_032270	HPRD:13284	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 family, member C	protein-coding
19-PTNLD28-TUMOR_peak_93985	chr7	93879390	93879583	+	7.82273	NA	Intergenic	Intergenic	-144387	NM_000089	1278	Hs.489142	NM_000089	HPRD:00363	COL1A2	OI4	collagen, type I, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_25482	chr12	83978510	83978605	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	897623	NM_152588	160335	Hs.577775	NM_152588	HPRD:13230	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_109087	chrX	106607639	106607813	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	157864	NM_173494	139212	Hs.128836	NM_173494	HPRD:06650	PIH1D3	CXorf41|NYSAR97	PIH1 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_88836	chr6	96644561	96644725	+	7.82273	NA	intron (NM_006581, intron 2 of 2)	MER39|LTR|ERV1	180798	NM_006581	10690	Hs.49117	NM_006581	HPRD:06036	FUT9	Fuc-TIX	fucosyltransferase 9 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_58285	chr2	216980067	216980197	+	7.82273	NA	intron (NM_021141, intron 2 of 20)	LTR88b|LTR|Gypsy?	6112	NM_021141	7520	Hs.388739	NM_021141	HPRD:08935	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)	protein-coding
19-PTNLD28-TUMOR_peak_89744	chr6	142601200	142601341	+	7.82273	NA	Intergenic	Intergenic	-21786	NM_001032394	57211	Hs.743302	NM_020455	HPRD:17059	GPR126	APG1|DREG|PS1TP2|VIGR	G protein-coupled receptor 126	protein-coding
19-PTNLD28-TUMOR_peak_67111	chr3	22419007	22419101	+	7.82273	NA	Intergenic	Intergenic	420423	NR_046876	100874221	Hs.160616	NR_046876		ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_37347	chr16	31383160	31383256	+	7.82273	NA	intron (NM_000887, intron 17 of 29)	L2b|LINE|L2	16753	NM_001286375	3687	Hs.248472	NM_000887	HPRD:01051	ITGAX	CD11C|SLEB6	integrin, alpha X (complement component 3 receptor 4 subunit)	protein-coding
19-PTNLD28-TUMOR_peak_100110	chr8	111150529	111150651	+	7.82273	NA	Intergenic	Intergenic	-163631	NM_014379	27012	Hs.13285	NM_014379	HPRD:16293	KCNV1	HNKA|KCNB3|KV2.3|KV8.1	potassium channel, subfamily V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22399	chr12	925745	925833	+	7.82273	NA	intron (NM_001184985, intron 2 of 27)	intron (NM_001184985, intron 2 of 27)	63700	NM_018979	65125	Hs.744906	NM_014823	HPRD:05570	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_60708	chr20	33917444	33917598	+	7.82273	NA	intron (NM_018244, intron 7 of 9)	intron (NM_018244, intron 7 of 9)	-37296	NM_178468	128876	Hs.592149	NM_178468	HPRD:12743	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83, member C	protein-coding
19-PTNLD28-TUMOR_peak_88789	chr6	91651702	91651918	+	7.82273	NA	Intergenic	Intergenic	-354790	NM_003188	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_69637	chr3	108208686	108208812	+	7.82273	NA	intron (NM_014981, intron 10 of 41)	intron (NM_014981, intron 10 of 41)	39420	NM_014981	22989	Hs.731060	NM_014981	ENSG00000144821	MYH15	-	myosin, heavy chain 15	protein-coding
19-PTNLD28-TUMOR_peak_108909	chrX	92281874	92281962	+	7.82273	NA	Intergenic	HERVH-int|LTR|ERV1	646764	NM_004538	4675	Hs.21365	NM_004538	HPRD:02123	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_107835	chrX	24513018	24513111	+	7.82273	NA	intron (NM_001142386, intron 2 of 11)	intron (NM_001142386, intron 2 of 11)	29720	NM_005391	5165	Hs.296031	NM_005391	HPRD:03956	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase, isozyme 3	protein-coding
19-PTNLD28-TUMOR_peak_14582	chr10	81486552	81486696	+	7.82273	NA	intron (NR_120613, intron 6 of 6)	Tigger3c|DNA|TcMar-Tigger	23641	NM_001278495	729262	Hs.742755	NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
19-PTNLD28-TUMOR_peak_31535	chr14	81912816	81912914	+	7.82273	NA	intron (NR_109999, intron 1 of 2)	FordPrefect|DNA|hAT-Tip100	3636	NR_109999	100506700	Hs.116304	NR_109999	ENSG00000258675	LOC100506700	-	uncharacterized LOC100506700	ncRNA
19-PTNLD28-TUMOR_peak_89730	chr6	141742694	141742793	+	7.82273	NA	Intergenic	L1ME3A|LINE|L1	667193	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_13269	chr10	45221024	45221151	+	7.82273	NA	Intergenic	L1MB8|LINE|L1	-185677	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_33502	chr15	48666068	48666171	+	7.82273	NA	Intergenic	Intergenic	41754	NM_001948	1854	Hs.527980	NM_001948	HPRD:03165	DUT	dUTPase	deoxyuridine triphosphatase	protein-coding
19-PTNLD28-TUMOR_peak_25476	chr12	83045395	83045507	+	7.82273	NA	Intergenic	Intergenic	-35483	NM_152588	160335	Hs.577775	NM_152588	HPRD:13230	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_12299	chr10	21180468	21180570	+	7.82273	NA	intron (NM_006393, intron 2 of 27)	intron (NM_006393, intron 2 of 27)	6012	NM_006393	10529	Hs.5025	NM_006393	HPRD:10403	NEBL	LASP2|LNEBL	nebulette	protein-coding
19-PTNLD28-TUMOR_peak_35277	chr15	92418576	92418807	+	7.82273	NA	intron (NM_013272, intron 1 of 9)	MIR|SINE|MIR	21753	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_20502	chr11	88213402	88213638	+	7.82273	NA	Intergenic	Intergenic	-24224	NR_049724	100873989	Hs.616625	NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24066	chr12	48782872	48783034	+	7.82273	NA	Intergenic	Intergenic	-37924	NM_001172682	121274	Hs.23492	NM_152320	HPRD:08711	ZNF641	-	zinc finger protein 641	protein-coding
19-PTNLD28-TUMOR_peak_81120	chr5	90515015	90515169	+	7.82273	NA	Intergenic	Intergenic	95127	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_45030	chr18	25293734	25293844	+	7.82273	NA	Intergenic	Intergenic	463656	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_67454	chr3	33414241	33414506	+	7.82273	NA	intron (NM_012157, intron 5 of 14)	MER5A1|DNA|hAT-Charlie	67497	NM_014517	7342	Hs.729120	NM_014517	HPRD:10291	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1 (LBP-1a)	protein-coding
19-PTNLD28-TUMOR_peak_18688	chr11	57711972	57712084	+	7.82273	NA	Intergenic	SVA_B|Other|Other	-79325	NM_001005212	219956	Hs.689841	NM_001005212	HPRD:17800	OR9Q1	-	olfactory receptor, family 9, subfamily Q, member 1	protein-coding
19-PTNLD28-TUMOR_peak_66234	chr3	4516616	4516794	+	7.82273	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-7739	NM_182760	285362	Hs.350475	NM_182760	HPRD:06399	SUMF1	AAPA3037|FGE	sulfatase modifying factor 1	protein-coding
19-PTNLD28-TUMOR_peak_108867	chrX	84499025	84499114	+	7.82273	NA	promoter-TSS (NM_021998)	promoter-TSS (NM_021998)	72	NM_021998	7552	Hs.326801	NM_021998	HPRD:02446	ZNF711	CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1	zinc finger protein 711	protein-coding
19-PTNLD28-TUMOR_peak_37657	chr16	48198932	48199161	+	7.82273	NA	Intergenic	Intergenic	-18365	NM_033226	94160	Hs.410111	NM_033226	HPRD:06128	ABCC12	MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
19-PTNLD28-TUMOR_peak_22062	chr11	128701172	128701279	+	7.82273	NA	Intergenic	Intergenic	11204	NM_000220	3758	Hs.527830	NM_000220	HPRD:08981	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding
19-PTNLD28-TUMOR_peak_18136	chr11	37532933	37533214	+	7.82273	NA	Intergenic	Intergenic	-913244	NM_001243786	5897	Hs.714519	NM_000536	HPRD:08913	RAG2	RAG-2	recombination activating gene 2	protein-coding
19-PTNLD28-TUMOR_peak_73146	chr3	189632740	189632833	+	7.82273	NA	Intergenic	Intergenic	85075	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
19-PTNLD28-TUMOR_peak_93029	chr7	68798118	68798226	+	7.82273	NA	Intergenic	Intergenic	264309	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_18386	chr11	46202426	46202516	+	7.82273	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	8965	NR_120565	101928894	Hs.552679	NR_120565	ENSG00000255314	LOC101928894	-	uncharacterized LOC101928894	ncRNA
19-PTNLD28-TUMOR_peak_12576	chr10	27649601	27649767	+	7.82273	NA	Intergenic	Intergenic	53613	NM_001034842	374308	Hs.631832	NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_61391	chr20	44728196	44728730	+	7.82273	NA	Intergenic	Intergenic	-9883	NM_020967	57727	Hs.654991	NM_020967	HPRD:14813	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
19-PTNLD28-TUMOR_peak_81615	chr5	112942201	112942477	+	7.82273	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	92948	NM_022828	64848	Hs.231942	NM_022828	HPRD:11690	YTHDC2	CAHL	YTH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_91294	chr7	12170456	12170581	+	7.82273	NA	Intergenic	L2|LINE|L2	-80330	NM_001134232	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_40619	chr17	20550137	20550248	+	7.82273	NA	Intergenic	Intergenic	-65567	NR_073509	100287072	Hs.676308	NR_073509		LOC100287072	-	ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88655	chr6	88146264	88146383	+	7.82273	NA	intron (NM_001031743, intron 11 of 12)	intron (NM_001031743, intron 11 of 12)	28633	NM_001031743	154313	Hs.82921	NM_178823	HPRD:12863	C6orf165	dJ382I10.1	chromosome 6 open reading frame 165	protein-coding
19-PTNLD28-TUMOR_peak_75661	chr4	74584504	74584683	+	7.82273	NA	Intergenic	Intergenic	-21630	NM_000584	3576	Hs.624	NM_000584	HPRD:00909	CXCL8	GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1	chemokine (C-X-C motif) ligand 8	protein-coding
19-PTNLD28-TUMOR_peak_74576	chr4	14347114	14347378	+	7.82273	NA	Intergenic	THE1D|LTR|ERVL-MaLR	233654	NR_033931	152742	Hs.135435	NR_033931	ENSG00000248698	LINC01085	-	long intergenic non-protein coding RNA 1085	ncRNA
19-PTNLD28-TUMOR_peak_22019	chr11	127931614	127931718	+	7.82273	NA	Intergenic	Intergenic	460539	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_87371	chr6	40792119	40792317	+	7.82273	NA	Intergenic	LTR50|LTR|ERVL	198801	NR_110873	101929555	Hs.552555	NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
19-PTNLD28-TUMOR_peak_27538	chr13	26273325	26273490	+	7.82273	NA	exon (NM_016529, exon 25 of 37)	exon (NM_016529, exon 25 of 37)	327198	NM_016529	51761	Hs.444957	NM_016529	HPRD:05795	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase, aminophospholipid transporter, class I, type 8A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_27703	chr13	31271739	31271879	+	7.82273	NA	Intergenic	Intergenic	-15806	NM_001204406	241	Hs.507658	NM_001629	HPRD:04742	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
19-PTNLD28-TUMOR_peak_56085	chr2	141212372	141212513	+	7.82273	NA	intron (NM_018557, intron 62 of 90)	intron (NM_018557, intron 62 of 90)	1557548	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_90387	chr6	161188535	161188655	+	7.82273	NA	Intergenic	CpG	65370	NM_001168338	5340	Hs.143436	NM_000301	HPRD:01417	PLG	-	plasminogen	protein-coding
19-PTNLD28-TUMOR_peak_25541	chr12	89936873	89937015	+	7.82273	NA	Intergenic	Intergenic	-16905	NR_037659	282809	Hs.25130	NM_172240	HPRD:18301	POC1B	PIX1|TUWD12|WDR51B	POC1 centriolar protein B	protein-coding
19-PTNLD28-TUMOR_peak_106491	chr9	134466668	134466846	+	7.82273	NA	intron (NM_005312, intron 15 of 23)	intron (NM_005312, intron 15 of 23)	-60095	NM_031432	83549	Hs.9597	NM_031432	HPRD:18256	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_77200	chr4	140540929	140541041	+	7.82273	NA	Intergenic	L2c|LINE|L2	-45937	NM_001204368	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_94795	chr7	107607286	107607376	+	7.82273	NA	intron (NM_002291, intron 13 of 33)	intron (NM_002291, intron 13 of 33)	36473	NM_002291	3912	Hs.650585	NM_002291	HPRD:01029	LAMB1	CLM|LIS5	laminin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_66238	chr3	4546461	4546612	+	7.82273	NA	intron (NM_001168272, intron 2 of 60)	intron (NM_001168272, intron 2 of 60)	11504	NM_002222	3708	Hs.567295	NM_002222	HPRD:00925	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor, type 1	protein-coding
19-PTNLD28-TUMOR_peak_88774	chr6	91113533	91113779	+	7.82273	NA	Intergenic	Intergenic	91195	NR_039671	100616109		NR_039671	miRBase:MI0016812	MIR4464	-	microRNA 4464	ncRNA
19-PTNLD28-TUMOR_peak_98385	chr8	41127134	41127254	+	7.82273	NA	intron (NM_003012, intron 2 of 2)	intron (NM_003012, intron 2 of 2)	39796	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_70011	chr3	118570588	118570807	+	7.82273	NA	Intergenic	Intergenic	-91226	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62789	chr21	15632155	15632249	+	7.82273	NA	Intergenic	Intergenic	-13918	NR_003088	150000	Hs.366575	NM_138726	HPRD:10586	ABCC13	C21orf73|PRED6	ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_20570	chr11	92499175	92499477	+	7.82273	NA	intron (NM_001008781, intron 5 of 24)	intron (NM_001008781, intron 5 of 24)	-203463	NM_005959	4544	Hs.569039	NM_005959	HPRD:02882	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
19-PTNLD28-TUMOR_peak_52882	chr2	56418901	56419005	+	7.82273	NA	intron (NM_001080433, intron 1 of 5)	intron (NM_001080433, intron 1 of 5)	-6048	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_940	chr1	14687620	14687775	+	7.82273	NA	Intergenic	L1PA7|LINE|L1	-237516	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_104597	chr9	94977125	94977282	+	7.82273	NA	intron (NR_073446, intron 32 of 32)	L1PA2|LINE|L1	73454	NR_027341	158314	Hs.149940	NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
19-PTNLD28-TUMOR_peak_58795	chr2	231852050	231852196	+	7.82273	NA	non-coding (NR_033879, exon 5 of 6)	non-coding (NR_033879, exon 5 of 6)	8624	NR_033879	348761	Hs.404807	NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_85619	chr6	15922896	15923069	+	7.82273	NA	Intergenic	Intergenic	-206335	NM_013262	29116	Hs.484738	NM_013262	HPRD:17621	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_37553	chr16	34848288	34848775	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-107691	NR_034018	100130700	Hs.97712	NR_034018	ENSG00000260857	LOC100130700	-	uncharacterized LOC100130700	ncRNA
19-PTNLD28-TUMOR_peak_11180	chr1	237188286	237188380	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-17369	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_24371	chr12	52900985	52901102	+	7.82273	NA	Intergenic	L1MC1|LINE|L1	13200	NM_000424	3852	Hs.433845	NM_000424	HPRD:01010	KRT5	CK5|DDD|DDD1|EBS2|K5|KRT5A	keratin 5	protein-coding
19-PTNLD28-TUMOR_peak_88850	chr6	97634421	97634538	+	7.82273	NA	exon (NM_198468, exon 15 of 25)	exon (NM_198468, exon 15 of 25)	96573	NM_198468	253714	Hs.444292	NM_198468	HPRD:12865	MMS22L	C6orf167|dJ39B17.2	MMS22-like, DNA repair protein	protein-coding
19-PTNLD28-TUMOR_peak_89196	chr6	115872697	115872861	+	7.82273	NA	Intergenic	Intergenic	-487115	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_93590	chr7	77779282	77779392	+	7.82273	NA	intron (NM_001301128, intron 15 of 20)	intron (NM_001301128, intron 15 of 20)	-197222	NR_003680	399670	Hs.568045	NR_003680	HPRD:14588	RPL13AP17	RPL13A_6_816	ribosomal protein L13a pseudogene 17	pseudo
19-PTNLD28-TUMOR_peak_102089	chr9	5818100	5818209	+	7.82273	NA	intron (NM_024896, intron 4 of 14)	AluJr4|SINE|Alu	14927	NM_024896	79956	Hs.591078	NM_024896	HPRD:17227	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_24962	chr12	64401760	64401914	+	7.82273	NA	intron (NM_020762, intron 3 of 21)	MIR|SINE|MIR	163296	NM_020762	57522	Hs.210751	NM_020762	HPRD:09406	SRGAP1	ARHGAP13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_48492	chr19	32209887	32210126	+	7.82273	NA	Intergenic	Intergenic	126819	NM_001205273	100507527	Hs.432564	NM_001205273		THEG5	-	testis highly expressed protein 5	protein-coding
19-PTNLD28-TUMOR_peak_10852	chr1	231892677	231892958	+	7.82273	NA	intron (NM_001164540, intron 4 of 10)	intron (NM_001164540, intron 4 of 10)	61446	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11486	chr1	246280608	246280696	+	7.82273	NA	intron (NM_022743, intron 5 of 11)	intron (NM_022743, intron 5 of 11)	300062	NM_022743	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_59658	chr20	5134582	5134730	+	7.82273	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	27249	NM_003818	8760	Hs.126857	NM_003818	HPRD:09150	CDS2	-	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding
19-PTNLD28-TUMOR_peak_69985	chr3	116793753	116793845	+	7.82273	NA	Intergenic	Intergenic	153521	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
19-PTNLD28-TUMOR_peak_76323	chr4	96432120	96432293	+	7.82273	NA	intron (NM_003728, intron 1 of 15)	intron (NM_003728, intron 1 of 15)	38155	NM_003728	8633	Hs.388565	NM_003728	HPRD:04678	UNC5C	UNC5H3	unc-5 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_17392	chr11	15349467	15349555	+	7.82273	NA	Intergenic	Intergenic	178863	NM_001278313	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_28170	chr13	47468202	47468408	+	7.82273	NA	intron (NM_001165947, intron 1 of 2)	intron (NM_001165947, intron 1 of 2)	2906	NM_001165947	3356	Hs.72630	NM_000621	HPRD:01638	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_21180	chr11	112181226	112181461	+	7.82273	NA	Intergenic	Intergenic	-49760	NM_001145024	349633	Hs.632097	NM_001145024	ENSG00000188771	PLET1	C11orf34	placenta expressed transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_91320	chr7	12746624	12746768	+	7.82273	NA	Intergenic	Intergenic	19785	NM_005738	10124	Hs.245540	NM_005738	HPRD:11987	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_41609	chr17	41416248	41416484	+	7.82273	NA	Intergenic	LTR13|LTR|ERVK	-35304	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	ncRNA
19-PTNLD28-TUMOR_peak_59902	chr20	14932460	14932676	+	7.82273	NA	intron (NM_080676, intron 5 of 16)	intron (NM_080676, intron 5 of 16)	-22404	NR_037841	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	BA318C17.1|NCRNA00186	MACROD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58596	chr2	223836570	223836711	+	7.82273	NA	Intergenic	Intergenic	-80008	NM_080671	23704	Hs.348522	NM_080671	HPRD:09689	KCNE4	MIRP3	potassium voltage-gated channel, Isk-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_74619	chr4	15854460	15854549	+	7.82273	NA	Intergenic	AluYf4|SINE|Alu	74573	NM_001775	952	Hs.479214	NM_001775		CD38	ADPRC 1|T10	CD38 molecule	protein-coding
19-PTNLD28-TUMOR_peak_42378	chr17	53397939	53398067	+	7.82273	NA	intron (NM_002126, intron 3 of 3)	intron (NM_002126, intron 3 of 3)	55682	NM_002126	3131	Hs.196952	NM_002126	HPRD:00797	HLF	-	hepatic leukemia factor	protein-coding
19-PTNLD28-TUMOR_peak_15015	chr10	97155995	97156142	+	7.82273	NA	intron (NM_001034954, intron 11 of 30)	intron (NM_001034954, intron 11 of 30)	44869	NM_001034955	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_91555	chr7	22295542	22295684	+	7.82273	NA	intron (NM_012294, intron 7 of 25)	MIRb|SINE|MIR	100920	NM_012294	9771	Hs.174768	NM_012294	HPRD:15208	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
19-PTNLD28-TUMOR_peak_1558	chr1	24754592	24754699	+	7.82273	NA	intron (NM_020448, intron 2 of 11)	AluJb|SINE|Alu	12400	NM_020448	57185	Hs.523442	NM_020448	HPRD:13149	NIPAL3	DJ462O23.2|NPAL3	NIPA-like domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_81902	chr5	125441861	125442023	+	7.82273	NA	Intergenic	Intergenic	-73328	NR_105042	102546228	Hs.582529	NR_105042		LOC102546228	-	uncharacterized LOC102546228	ncRNA
19-PTNLD28-TUMOR_peak_93516	chr7	76229461	76229578	+	7.82273	NA	intron (NR_029411, intron 2 of 2)	MLT1F2|LTR|ERVL-MaLR	27101	NM_152992	22932	Hs.488877	NM_012230	HPRD:15974	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
19-PTNLD28-TUMOR_peak_99959	chr8	105677560	105677649	+	7.82273	NA	Intergenic	MIRb|SINE|MIR	-76352	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_52310	chr2	41031180	41031309	+	7.82273	NA	Intergenic	Intergenic	-291669	NM_001112802	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_8196	chr1	172283845	172283959	+	7.82273	NA	intron (NM_001136127, intron 16 of 19)	L1PA3|LINE|L1	-105926	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_83766	chr5	168343868	168344106	+	7.82273	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	-96245	NR_109897	728095	Hs.145601	NR_109897	ENSG00000248222	CTB-174D11.1	-	uncharacterized LOC728095	ncRNA
19-PTNLD28-TUMOR_peak_81894	chr5	125055589	125055731	+	7.82273	NA	Intergenic	Intergenic	226706	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
19-PTNLD28-TUMOR_peak_30716	chr14	63671039	63671129	+	7.82273	NA	promoter-TSS (NM_020663)	promoter-TSS (NM_020663)	-18	NM_020663	57381	Hs.656339	NM_020663	HPRD:09632	RHOJ	ARHJ|RASL7B|TC10B|TCL	ras homolog family member J	protein-coding
19-PTNLD28-TUMOR_peak_108834	chrX	80237714	80237850	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-172549	NM_153252	254065	Hs.147027	NM_153252	HPRD:06564	BRWD3	BRODL|MRX93	bromodomain and WD repeat domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_76425	chr4	103220970	103221143	+	7.82273	NA	intron (NM_022154, intron 5 of 7)	intron (NM_022154, intron 5 of 7)	24413	NM_001135148	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_67275	chr3	27565235	27565437	+	7.82273	NA	Intergenic	Intergenic	-39425	NM_001258379	9497	Hs.250072	NM_003615	HPRD:04521	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding
19-PTNLD28-TUMOR_peak_108981	chrX	100913695	100913784	+	7.82273	NA	intron (NM_014782, intron 2 of 4)	intron (NM_014782, intron 2 of 4)	1137	NM_177949	9823	Hs.48924	NM_014782	HPRD:02293	ARMCX2	ALEX2|GASP9	armadillo repeat containing, X-linked 2	protein-coding
19-PTNLD28-TUMOR_peak_85897	chr6	21898495	21898588	+	7.82273	NA	intron (NR_015410, intron 4 of 11)	intron (NR_015410, intron 4 of 11)	231866	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_98175	chr8	37336858	37337141	+	7.82273	NA	intron (NR_121620, intron 1 of 6)	intron (NR_121620, intron 1 of 6)	14432	NR_121620	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_91881	chr7	31174110	31174317	+	7.82273	NA	Intergenic	Intergenic	82137	NM_001199636	117	Hs.377783	NM_001118	HPRD:00045	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I	protein-coding
19-PTNLD28-TUMOR_peak_60048	chr20	18625331	18625520	+	7.82273	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	53927	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
19-PTNLD28-TUMOR_peak_77904	chr4	164463508	164463731	+	7.82273	NA	intron (NM_017923, intron 3 of 3)	intron (NM_017923, intron 3 of 3)	47946	NM_018352	55319	Hs.267446	NM_018352	HPRD:07739	TMA16	C4orf43	translation machinery associated 16 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_63149	chr21	33124808	33124964	+	7.82273	NA	Intergenic	ERVL-E-int|LTR|ERVL	-20455	NM_001145444	57466	Hs.17255	NM_020706	HPRD:11551	SCAF4	SFRS15|SRA4	SR-related CTD-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_76624	chr4	112299515	112299603	+	7.82273	NA	Intergenic	L1PA4|LINE|L1	-736280	NM_001204399	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_89455	chr6	131206638	131206742	+	7.82273	NA	intron (NM_001199388, intron 11 of 17)	intron (NM_001199388, intron 11 of 17)	58145	NM_001195597	100507203	Hs.388715	NM_001195597	ENSG00000256162	SMLR1	-	small leucine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38834	chr16	78005522	78005673	+	7.82273	NA	intron (NM_020927, intron 7 of 8)	intron (NM_020927, intron 7 of 8)	-50846	NM_005752	10143	Hs.177936	NM_005752	HPRD:13072	CLEC3A	CLECSF1	C-type lectin domain family 3, member A	protein-coding
19-PTNLD28-TUMOR_peak_28152	chr13	47065024	47065112	+	7.82273	NA	Intergenic	Intergenic	-24157	NR_120426	101929344	Hs.491939	NR_120426		LINC01198	-	long intergenic non-protein coding RNA 1198	ncRNA
19-PTNLD28-TUMOR_peak_4600	chr1	85575207	85575295	+	7.82273	NA	intron (NM_001288563, intron 14 of 21)	intron (NM_001288563, intron 14 of 21)	-24226	NR_039619	100616481		NR_039619	miRBase:MI0016760	MIR4423	-	microRNA 4423	ncRNA
19-PTNLD28-TUMOR_peak_33658	chr15	56067681	56067846	+	7.82273	NA	Intergenic	L2b|LINE|L2	-32586	NM_173814	283659	Hs.130957	NM_173814	HPRD:18765	PRTG	IGDCC5	protogenin	protein-coding
19-PTNLD28-TUMOR_peak_29921	chr14	35889338	35889513	+	7.82273	NA	Intergenic	Intergenic	-15465	NM_020529	4792	Hs.81328	NM_020529	HPRD:01235	NFKBIA	IKBA|MAD-3|NFKBI	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_70893	chr3	132855303	132855396	+	7.82273	NA	intron (NM_001282865, intron 1 of 3)	intron (NM_001282865, intron 1 of 3)	11684	NM_001282865	66000	Hs.191616	NM_023943	HPRD:11329	TMEM108	CT124	transmembrane protein 108	protein-coding
19-PTNLD28-TUMOR_peak_29362	chr14	21341946	21342074	+	7.82273	NA	Intergenic	Intergenic	-17552	NM_002935	6037	Hs.73839	NM_002935	HPRD:00575	RNASE3	ECP|RNS3	ribonuclease, RNase A family, 3	protein-coding
19-PTNLD28-TUMOR_peak_47876	chr19	17331087	17331201	+	7.82273	NA	TTS (NM_018467)	TTS (NM_018467)	4989	NM_018467	55850	Hs.16187	NM_018467	HPRD:11299	USE1	P31|SLT1	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_43148	chr17	66818141	66818258	+	7.82273	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	133334	NM_001288986	10351	Hs.58351	NM_007168	HPRD:09790	ABCA8	-	ATP-binding cassette, sub-family A (ABC1), member 8	protein-coding
19-PTNLD28-TUMOR_peak_13728	chr10	60174444	60174630	+	7.82273	NA	Intergenic	Intergenic	29634	NM_001270782	7019	Hs.594250	NM_003201	HPRD:02702	TFAM	MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_100066	chr8	109481102	109481272	+	7.82273	NA	intron (NM_014673, intron 5 of 10)	L2c|LINE|L2	25334	NM_014673	9694	Hs.654351	NM_014673	HPRD:09657	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_102016	chr9	4167150	4167253	+	7.82273	NA	intron (NM_001042413, intron 2 of 10)	MIR3|SINE|MIR	-15018	NM_152629	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_68657	chr3	60280033	60280137	+	7.82273	NA	intron (NM_001166243, intron 5 of 9)	MIR3|SINE|MIR	957048	NM_002012	2272	Hs.655995	NM_002012	HPRD:03096	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
19-PTNLD28-TUMOR_peak_58569	chr2	222700930	222701023	+	7.82273	NA	Intergenic	Intergenic	-263966	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_91284	chr7	11580175	11580350	+	7.82273	NA	intron (NM_015204, intron 6 of 26)	intron (NM_015204, intron 6 of 26)	291562	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin, type I, domain containing 7A	protein-coding
19-PTNLD28-TUMOR_peak_14723	chr10	88137051	88137197	+	7.82273	NA	Intergenic	CpG	-10874	NM_017551	2894	Hs.530653	NM_017551	HPRD:17078	GRID1	GluD1	glutamate receptor, ionotropic, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_97285	chr8	16273856	16273970	+	7.82273	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-223613	NM_138715	4481	Hs.147635	NM_002445	HPRD:01092	MSR1	CD204|SCARA1|SR-A|SRA|phSR1|phSR2	macrophage scavenger receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_99905	chr8	104019528	104019690	+	7.82273	NA	Intergenic	AluJb|SINE|Alu	-13639	NM_001695	528	Hs.86905	NM_001695	HPRD:04371	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	protein-coding
19-PTNLD28-TUMOR_peak_30250	chr14	51338739	51338855	+	7.82273	NA	promoter-TSS (NM_181814)	promoter-TSS (NM_181814)	-81	NM_001206673	145447	Hs.271896	NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
19-PTNLD28-TUMOR_peak_99632	chr8	98630583	98630751	+	7.82273	NA	Intergenic	Intergenic	-25740	NM_178812	92140	Hs.377155	NM_178812	HPRD:17459	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
19-PTNLD28-TUMOR_peak_13624	chr10	52634570	52634769	+	7.82273	NA	intron (NM_001198818, intron 1 of 13)	MER5B|DNA|hAT-Charlie	10766	NM_138932	29974	Hs.282795	NM_014576	HPRD:10627	A1CF	ACF|ACF64|ACF65|APOBEC1CF|ASP	APOBEC1 complementation factor	protein-coding
19-PTNLD28-TUMOR_peak_82987	chr5	146174293	146174423	+	7.82273	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	83990	NM_001271948	5521	Hs.627618	NM_181674	HPRD:05059	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
19-PTNLD28-TUMOR_peak_109402	chrX	128674133	128674272	+	7.82273	NA	promoter-TSS (NM_000276)	promoter-TSS (NM_000276)	-50	NM_001587	4952	Hs.126357	NM_000276	HPRD:02395	OCRL	INPP5F|LOCR|NPHL2|OCRL-1|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding
19-PTNLD28-TUMOR_peak_85064	chr6	6257894	6258002	+	7.82273	NA	intron (NM_000129, intron 4 of 14)	intron (NM_000129, intron 4 of 14)	62976	NM_000129	2162	Hs.335513	NM_000129	HPRD:00604	F13A1	F13A	coagulation factor XIII, A1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_76638	chr4	112913086	112913210	+	7.82273	NA	Intergenic	Intergenic	-153405	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_4071	chr1	64529002	64529113	+	7.82273	NA	intron (NM_001083592, intron 4 of 6)	MER34A|LTR|ERV1	48831	NR_110666	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98371	chr8	40912916	40913196	+	7.82273	NA	Intergenic	L2b|LINE|L2	-157713	NM_001135731	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_22590	chr12	4245330	4245487	+	7.82273	NA	Intergenic	Intergenic	-137494	NM_001759	894	Hs.376071	NM_001759	HPRD:00451	CCND2	KIAK0002	cyclin D2	protein-coding
19-PTNLD28-TUMOR_peak_104122	chr9	84448455	84448699	+	7.82273	NA	Intergenic	Intergenic	-79775	NR_026851	347127	Hs.215235	NM_198509	ENSG00000240632	SPATA31D5P	FAM75D5|FAM75D5P	SPATA31 subfamily D, member 5, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66787	chr3	14014612	14014716	+	7.82273	NA	intron (NR_002223, intron 1 of 2)	LTR10A|LTR|ERV1	35857	NR_002223	348825	Hs.529180	NR_002223	ENSG00000180438	TPRXL	-	tetra-peptide repeat homeobox-like	pseudo
19-PTNLD28-TUMOR_peak_109629	chrX	139381265	139381403	+	7.82273	NA	Intergenic	Intergenic	205891	NM_005634	6658	Hs.157429	NM_005634	HPRD:02432	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY (sex determining region Y)-box 3	protein-coding
19-PTNLD28-TUMOR_peak_25669	chr12	95942545	95942700	+	7.82273	NA	promoter-TSS (NM_001278393)	promoter-TSS (NM_001278393)	-2	NM_001042403	84101	Hs.646421	NM_032147	HPRD:15636	USP44	-	ubiquitin specific peptidase 44	protein-coding
19-PTNLD28-TUMOR_peak_28855	chr13	101167226	101167318	+	7.82273	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	18784	NM_033110	87769	Hs.350868	NM_033110		GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_99515	chr8	94547869	94547989	+	7.82273	NA	intron (NR_033858, intron 6 of 10)	L2c|LINE|L2	164732	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
19-PTNLD28-TUMOR_peak_66902	chr3	15397837	15398004	+	7.82273	NA	Intergenic	Intergenic	-15019	NM_001018009	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_4141	chr1	66322376	66322551	+	7.82273	NA	intron (NM_002600, intron 1 of 16)	L1PA8|LINE|L1	-56465	NM_001297441	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_9116	chr1	200108923	200109039	+	7.82273	NA	intron (NM_205860, intron 7 of 7)	MER91C|DNA|hAT-Tip100	97028	NM_001276464	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_12599	chr10	28426853	28426945	+	7.82273	NA	intron (NM_173496, intron 7 of 18)	intron (NM_173496, intron 7 of 18)	-138915	NM_018076	55130	Hs.127530	NM_018076	HPRD:10663	ARMC4	CILD23	armadillo repeat containing 4	protein-coding
19-PTNLD28-TUMOR_peak_73342	chr3	193896658	193896758	+	7.82273	NA	Intergenic	Intergenic	27388	NR_125404	100505920	Hs.436654	NR_125403		LOC100505920	-	uncharacterized LOC100505920	ncRNA
19-PTNLD28-TUMOR_peak_92972	chr7	66600852	66601035	+	7.82273	NA	intron (NM_018264, intron 13 of 15)	MIR|SINE|MIR	-21559	NR_039793	100616310		NR_039793	miRBase:MI0017277	MIR4650-1	-	microRNA 4650-1	ncRNA
19-PTNLD28-TUMOR_peak_27136	chr12	128625363	128625568	+	7.82273	NA	Intergenic	Intergenic	22703	NR_104648	101927694	Hs.524849	NR_104648	ENSG00000256659	LOC101927694	-	uncharacterized LOC101927694	ncRNA
19-PTNLD28-TUMOR_peak_98701	chr8	50314229	50314396	+	7.82273	NA	Intergenic	Intergenic	329412	NM_001256597	492307	Hs.49890	NM_001007176	HPRD:16670	C8orf22	-	chromosome 8 open reading frame 22	protein-coding
19-PTNLD28-TUMOR_peak_110103	chrY	2193187	2193485	+	7.82273	NA	intron (NM_145177, intron 3 of 6).2	LTR9|LTR|ERV1	175244	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89226	chr6	116786582	116786736	+	7.82273	NA	Intergenic	AluJb|SINE|Alu	4126	NM_001010919	441168	Hs.381220	NM_001010919	HPRD:18644	FAM26F	C6orf187|dJ93H18.5	family with sequence similarity 26, member F	protein-coding
19-PTNLD28-TUMOR_peak_51927	chr2	30249313	30249518	+	7.82273	NA	Intergenic	Intergenic	-104938	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_79409	chr5	33663324	33663431	+	7.82273	NA	intron (NM_030955, intron 5 of 23)	intron (NM_030955, intron 5 of 23)	222495	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_22022	chr11	128005349	128005615	+	7.82273	NA	Intergenic	Intergenic	386723	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_75333	chr4	54510974	54511179	+	7.82273	NA	Intergenic	Intergenic	51953	NR_046827	100873955	Hs.351074	NR_046827		LNX1-AS2	-	LNX1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_8966	chr1	191809216	191809306	+	7.82273	NA	Intergenic	Intergenic	-318331	NM_130782	64407	Hs.440890	NM_130782	HPRD:06224	RGS18	RGS13	regulator of G-protein signaling 18	protein-coding
19-PTNLD28-TUMOR_peak_38476	chr16	69233371	69233563	+	7.82273	NA	intron (NM_006750, intron 1 of 6)	AluJb|SINE|Alu	12417	NM_006750	6645	Hs.461117	NM_006750	HPRD:02491	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
19-PTNLD28-TUMOR_peak_42231	chr17	48423973	48424077	+	7.82273	NA	intron (NR_110010, intron 1 of 9)	CpG	632	NM_022167	64132	Hs.463416	NM_022167	HPRD:16286	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
19-PTNLD28-TUMOR_peak_94953	chr7	117836057	117836235	+	7.82273	NA	3' UTR (NM_016200, exon 4 of 4)	3' UTR (NM_016200, exon 4 of 4)	12060	NM_016200	51691	Hs.655046	NM_016200		LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_74897	chr4	30886282	30886370	+	7.82273	NA	intron (NM_032457, intron 1 of 2)	intron (NM_032457, intron 1 of 2)	164289	NM_032457	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_30354	chr14	53968799	53968981	+	7.82273	NA	Intergenic	Intergenic	348818	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
19-PTNLD28-TUMOR_peak_72029	chr3	158857205	158857327	+	7.82273	NA	intron (NM_001042706, intron 1 of 3)	intron (NM_001042706, intron 1 of 3)	70225	NM_001197100	654502	Hs.570685	NM_001042705	ENSG00000214216	IQCJ	-	IQ motif containing J	protein-coding
19-PTNLD28-TUMOR_peak_80581	chr5	71723779	71723912	+	7.82273	NA	Intergenic	Intergenic	79404	NM_152625	167465	Hs.370303	NM_152625	HPRD:18329	ZNF366	DCSCRIPT	zinc finger protein 366	protein-coding
19-PTNLD28-TUMOR_peak_42409	chr17	53810095	53810351	+	7.82273	NA	promoter-TSS (NM_001099640)	promoter-TSS (NM_001099640)	-741	NM_001099640	55273	Hs.173233	NM_018286	HPRD:07719	TMEM100	-	transmembrane protein 100	protein-coding
19-PTNLD28-TUMOR_peak_107367	chrX	2243187	2243485	+	7.82273	NA	intron (NM_145177, intron 3 of 6)	LTR9|LTR|ERV1	175244	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42101	chr17	47189382	47189532	+	7.82273	NA	Intergenic	PRIMA4-int|LTR|ERV1	-20365	NM_001159388	124872	Hs.374679	NM_153446	HPRD:13558	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_95293	chr7	130361785	130361993	+	7.82273	NA	intron (NM_052933, intron 5 of 7)	AluY|SINE|Alu	-8291	NM_001290033	26958	Hs.6421	NM_012133		COPG2	2-COP|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_28685	chr13	94212151	94212286	+	7.82273	NA	intron (NM_005708, intron 2 of 8)	intron (NM_005708, intron 2 of 8)	298508	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_21128	chr11	111522227	111522360	+	7.82273	NA	intron (NM_015191, intron 3 of 14)	L1PA10|LINE|L1	49123	NM_015191	23235	Hs.269128	NM_015191		SIK2	LOH11CR1I|QIK|SNF1LK2	salt-inducible kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_32613	chr15	24928205	24928461	+	7.82273	NA	3' UTR (NM_018958, exon 1 of 1)	3' UTR (NM_018958, exon 1 of 1)	7792	NM_018958	23742	Hs.649663	NM_018958	HPRD:08506	NPAP1	C15orf2	nuclear pore associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_90155	chr6	155424356	155424690	+	7.82273	NA	intron (NM_012454, intron 1 of 25)	intron (NM_012454, intron 1 of 25)	13100	NM_012454	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_83932	chr5	171498380	171498473	+	7.82273	NA	intron (NM_005990, intron 12 of 18)	LTR43|LTR|ERV1	-64549	NM_033645	23291	Hs.484138	NM_012300	HPRD:07294	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_31552	chr14	84106165	84106253	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-1754014	NR_102737	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_107890	chrX	30990004	30990093	+	7.82273	NA	Intergenic	Intergenic	-82537	NM_152787	257397	Hs.188256	NM_152787	HPRD:06738	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_54743	chr2	108543645	108543733	+	7.82273	NA	Intergenic	Intergenic	-59306	NM_021815	60482	Hs.287758	NM_021815	HPRD:12294	SLC5A7	CHT|CHT1|HMN7A|hCHT	solute carrier family 5 (sodium/choline cotransporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_103722	chr9	72500419	72500824	+	7.82273	NA	intron (NM_001010940, intron 4 of 5)	L1MEd|LINE|L1	64890	NM_001010940	138255	Hs.444459	NM_001010940	HPRD:17298	C9orf135	-	chromosome 9 open reading frame 135	protein-coding
19-PTNLD28-TUMOR_peak_79337	chr5	32232706	32232799	+	7.82273	NA	intron (NM_001294344, intron 13 of 13)	intron (NM_001294344, intron 13 of 13)	-58327	NM_022130	64083	Hs.408909	NM_022130	HPRD:11007	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
19-PTNLD28-TUMOR_peak_105735	chr9	120309289	120309463	+	7.82273	NA	Intergenic	Intergenic	-101508	NR_109806	101928797	Hs.382317	NR_109806	ENSG00000233569	LOC101928797	-	uncharacterized LOC101928797	ncRNA
19-PTNLD28-TUMOR_peak_65282	chr22	35926004	35926160	+	7.82273	NA	Intergenic	Intergenic	-11270	NM_014310	23551	Hs.474711	NM_014310	HPRD:15210	RASD2	MGC:4834|Rhes|TEM2	RASD family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_80287	chr5	65175609	65175713	+	7.82273	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-46721	NM_001253701	55914	Hs.591774	NM_018695	HPRD:06090	ERBB2IP	ERBIN|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_59387	chr20	412239	412350	+	7.82273	NA	TTS (NM_006462)	TTS (NM_006462)	23585	NM_031229	10616	Hs.247280	NM_006462	HPRD:16643	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding
19-PTNLD28-TUMOR_peak_77140	chr4	139197260	139197368	+	7.82273	NA	Intergenic	Intergenic	-33551	NR_051987	100874047	Hs.570848	NR_051987	ENSG00000251372	LINC00499	-	long intergenic non-protein coding RNA 499	ncRNA
19-PTNLD28-TUMOR_peak_83301	chr5	151205069	151205238	+	7.82273	NA	intron (NM_001146040, intron 8 of 8)	intron (NM_001146040, intron 8 of 8)	53677	NM_198395	10146	Hs.3353	NM_005754	HPRD:06569	G3BP1	G3BP|HDH-VIII	GTPase activating protein (SH3 domain) binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_71779	chr3	152049116	152049293	+	7.82273	NA	intron (NM_207292, intron 2 of 8)	LFSINE_Vert|SINE|SINE	9575	NM_001123228	645843	Hs.632562	NM_001123228	ENSG00000221962	TMEM14E	-	transmembrane protein 14E	protein-coding
19-PTNLD28-TUMOR_peak_32413	chr14	106829474	106829578	+	7.82273	NA	Intergenic	Intergenic	85257	NR_033375	338004	Hs.569411	NR_033375	ENSG00000229084	LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
19-PTNLD28-TUMOR_peak_108356	chrX	52331158	52331255	+	7.82273	NA	Intergenic	Intergenic	55815	NM_130777	9502	Hs.409726	NM_130777	HPRD:02332	XAGE2	CT12.2|GAGED3|XAGE-2	X antigen family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_91293	chr7	12151524	12151760	+	7.82273	NA	Intergenic	Intergenic	-99206	NM_001134232	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_21707	chr11	121694630	121694718	+	7.82273	NA	Intergenic	L1HS|LINE|L1	275878	NR_029671	406911		NR_029671	miRBase:MI0000446	MIR125B1	MIRN125B1	microRNA 125b-1	ncRNA
19-PTNLD28-TUMOR_peak_32902	chr15	32334741	32334886	+	7.82273	NA	intron (NM_001190455, intron 2 of 9)	L1MC1|LINE|L1	12127	NR_046324	1139	Hs.511772	NM_000746		CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor, nicotinic, alpha 7 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_26371	chr12	112746614	112746807	+	7.82273	NA	intron (NM_001109662, intron 5 of 75)	intron (NM_001109662, intron 5 of 75)	73186	NM_001109662	283450	Hs.530943	NM_173813	HPRD:08170	HECTD4	C12orf51|POTAGE	HECT domain containing E3 ubiquitin protein ligase 4	protein-coding
19-PTNLD28-TUMOR_peak_28530	chr13	77430273	77430528	+	7.82273	NA	Intergenic	MER51A|LTR|ERV1	30140	NM_138444	115207	Hs.644125	NM_138444	HPRD:11060	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_79892	chr5	54089012	54089129	+	7.82273	NA	Intergenic	Intergenic	-48984	NR_104658	102467080	Hs.637409	NR_104658		LOC102467080	-	uncharacterized LOC102467080	ncRNA
19-PTNLD28-TUMOR_peak_51881	chr2	29299342	29299459	+	7.82273	NA	Intergenic	Intergenic	-2273	NM_001029883	388939	Hs.354243	NM_001029883	ENSG00000179270	C2orf71	RP54	chromosome 2 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_92721	chr7	57104250	57104340	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-80724	NR_036270	100422848		NR_036270	miRBase:MI0015982	MIR4283-2	-	microRNA 4283-2	ncRNA
19-PTNLD28-TUMOR_peak_77578	chr4	152135770	152135864	+	7.82273	NA	intron (NM_001009555, intron 2 of 20)	SVA_D|Other|Other	11843	NM_001009555	152503	Hs.744983	NM_001009555	HPRD:16364	SH3D19	EBP|EVE1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
19-PTNLD28-TUMOR_peak_105680	chr9	118707021	118707128	+	7.82273	NA	Intergenic	Intergenic	-19697	NR_024032	58483	Hs.23367	NM_021208		LINC00474	C9orf27|EST-YD1	long intergenic non-protein coding RNA 474	ncRNA
19-PTNLD28-TUMOR_peak_104035	chr9	81310437	81310532	+	7.82273	NA	Intergenic	Intergenic	398493	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_75097	chr4	42284156	42284248	+	7.82273	NA	Intergenic	Intergenic	-115654	NM_001080505	152573	Hs.370904	NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
19-PTNLD28-TUMOR_peak_85855	chr6	20810718	20810815	+	7.82273	NA	intron (NM_017774, intron 8 of 15)	AluJr|SINE|Alu	276078	NM_017774	54901	Hs.657604	NM_017774	HPRD:13022	CDKAL1	-	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_64095	chr21	47401675	47401913	+	7.82273	NA	exon (NM_001848, exon 1 of 35)	exon (NM_001848, exon 1 of 35)	131	NM_001848	1291	Hs.474053	NM_001848	HPRD:00370	COL6A1	OPLL	collagen, type VI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_78959	chr5	12910713	12910947	+	7.82273	NA	Intergenic	Intergenic	335861	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_91394	chr7	17316117	17316226	+	7.82273	NA	Intergenic	L2c|LINE|L2	-22105	NM_001621	196	Hs.171189	NM_001621	HPRD:02596	AHR	bHLHe76	aryl hydrocarbon receptor	protein-coding
19-PTNLD28-TUMOR_peak_17272	chr11	12849923	12850087	+	7.82273	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	154036	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_32219	chr14	103966643	103966749	+	7.82273	NA	intron (NM_001128918, intron 17 of 17)	intron (NM_001128918, intron 17 of 17)	22500	NM_001823	1152	Hs.173724	NM_001823	HPRD:00423	CKB	B-CK|BCK|CKBB|HEL-211|HEL-S-29	creatine kinase, brain	protein-coding
19-PTNLD28-TUMOR_peak_94929	chr7	116909619	116909714	+	7.82273	NA	Intergenic	L2a|LINE|L2	53677	NM_003391	7472	Hs.567356	NM_003391	HPRD:00999	WNT2	INT1L1|IRP	wingless-type MMTV integration site family member 2	protein-coding
19-PTNLD28-TUMOR_peak_109507	chrX	132684491	132684594	+	7.82273	NA	intron (NM_001164618, intron 7 of 7)	L2c|LINE|L2	-135337	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
19-PTNLD28-TUMOR_peak_25415	chr12	79452262	79452408	+	7.82273	NA	intron (NM_005639, intron 3 of 10)	intron (NM_005639, intron 3 of 10)	12902	NM_001135806	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
19-PTNLD28-TUMOR_peak_102157	chr9	8703949	8704247	+	7.82273	NA	intron (NM_001040712, intron 1 of 29)	L2|LINE|L2	29848	NM_130393	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_69485	chr3	101798199	101798300	+	7.82273	NA	Intergenic	Intergenic	138546	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_44384	chr18	5909008	5909379	+	7.82273	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-17090	NM_001080209	645369	Hs.346566	NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
19-PTNLD28-TUMOR_peak_80915	chr5	79510251	79510340	+	7.82273	NA	intron (NM_178276, intron 1 of 12)	intron (NM_178276, intron 1 of 12)	41603	NM_001174072	256987	Hs.288232	NM_178276	HPRD:12828	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19-PTNLD28-TUMOR_peak_4784	chr1	90246376	90246464	+	7.82273	NA	Intergenic	Intergenic	-40153	NM_001134479	55144	Hs.482087	NM_018103	HPRD:11287	LRRC8D	LRRC5	leucine rich repeat containing 8 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_53202	chr2	66949006	66949300	+	7.82273	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-18794	NR_110265	101927577	Hs.380543	NR_110264		LOC101927577	-	uncharacterized LOC101927577	ncRNA
19-PTNLD28-TUMOR_peak_58137	chr2	210256587	210256874	+	7.82273	NA	Intergenic	L3b|LINE|CR1	-32041	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_25206	chr12	69891544	69891657	+	7.82273	NA	intron (NM_001278351, intron 2 of 10)	L2a|LINE|L2	27471	NM_001278355	10818	Hs.593446	NM_006654	HPRD:06372	FRS2	FRS2A|FRS2alpha|SNT|SNT-1|SNT1	fibroblast growth factor receptor substrate 2	protein-coding
19-PTNLD28-TUMOR_peak_100417	chr8	121873696	121873905	+	7.82273	NA	Intergenic	L1PBa|LINE|L1	-49491	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_31184	chr14	72918308	72918420	+	7.82273	NA	intron (NM_001204420, intron 3 of 15)	intron (NM_001204420, intron 3 of 15)	-65164	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_60033	chr20	18294162	18294313	+	7.82273	NA	intron (NM_001283003, intron 4 of 4)	intron (NM_001283003, intron 4 of 4)	25310	NM_001283008	7692	Hs.472221	NM_003434	HPRD:04964	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
19-PTNLD28-TUMOR_peak_38797	chr16	76687457	76687567	+	7.82273	NA	intron (NR_110934, intron 2 of 3)	intron (NR_110934, intron 2 of 3)	18617	NR_110934	101928203	Hs.737035	NR_110934	ENSG00000250514	LOC101928203	-	uncharacterized LOC101928203	ncRNA
19-PTNLD28-TUMOR_peak_74885	chr4	28773788	28773999	+	7.82273	NA	Intergenic	Intergenic	-47311	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	ncRNA
19-PTNLD28-TUMOR_peak_88391	chr6	76059082	76059175	+	7.82273	NA	intron (NM_001300866, intron 4 of 6)	intron (NM_001300866, intron 4 of 6)	64398	NR_040081	100506804	Hs.743708	NR_040081		LOC100506804	-	uncharacterized LOC100506804	ncRNA
19-PTNLD28-TUMOR_peak_15798	chr10	116514565	116514731	+	7.82273	NA	Intergenic	Intergenic	-9899	NR_120628	101927692	Hs.576909	NR_120628	ENSG00000228484	LOC101927692	-	uncharacterized LOC101927692	ncRNA
19-PTNLD28-TUMOR_peak_24654	chr12	56415147	56415354	+	7.82273	NA	5' UTR (NM_022465, exon 1 of 8)	5' UTR (NM_022465, exon 1 of 8)	561	NM_022465	64375	Hs.553221	NM_022465	HPRD:05874	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4 (Eos)	protein-coding
19-PTNLD28-TUMOR_peak_76721	chr4	117071479	117071702	+	7.82273	NA	Intergenic	L1MA3|LINE|L1	-149291	NR_031737	100302290		NR_031737		MIR1973	hsa-mir-1973	microRNA 1973	ncRNA
19-PTNLD28-TUMOR_peak_28887	chr13	102293227	102293328	+	7.82273	NA	intron (NM_001271755, intron 6 of 9)	intron (NM_001271755, intron 6 of 9)	150974	NM_001271756	9358	Hs.696554	NM_004791	HPRD:07253	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
19-PTNLD28-TUMOR_peak_29743	chr14	32371394	32371508	+	7.82273	NA	Intergenic	L2a|LINE|L2	174454	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_29896	chr14	35693205	35693316	+	7.82273	NA	intron (NM_001256680, intron 4 of 6)	intron (NM_001256680, intron 4 of 6)	-54504	NM_001282234	5687	Hs.446260	NM_002791	HPRD:04171	PSMA6	IOTA|PROS27|p27K	proteasome (prosome, macropain) subunit, alpha type, 6	protein-coding
19-PTNLD28-TUMOR_peak_339	chr1	6101639	6101742	+	7.82273	NA	intron (NM_172130, intron 2 of 14)	intron (NM_172130, intron 2 of 14)	-4291	NM_001199862	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_102817	chr9	34809509	34809856	+	7.82273	NA	Intergenic	CpG	28901	NR_024481	389715	Hs.713965	NM_001126494		FAM205B	C9orf144	transmembrane protein C9orf144B pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88218	chr6	70332130	70332277	+	7.82273	NA	Intergenic	LTR9|LTR|ERV1	174846	NM_018368	55788	Hs.271643	NM_018368	HPRD:12877	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_23641	chr12	31783076	31783208	+	7.82273	NA	Intergenic	MIR|SINE|MIR	-16952	NM_001135864	254013	Hs.740628	NM_173802	HPRD:14666	METTL20	C12orf72	methyltransferase like 20	protein-coding
19-PTNLD28-TUMOR_peak_39703	chr17	2356736	2356862	+	7.82273	NA	intron (NM_024086, intron 6 of 9)	L1MC4|LINE|L1	-38069	NR_028335	284009	Hs.632244	NM_001025459	HPRD:18767	LOC284009	-	uncharacterized LOC284009	ncRNA
19-PTNLD28-TUMOR_peak_62810	chr21	16564719	16564908	+	7.82273	NA	Intergenic	Intergenic	-127687	NM_003489	8204	Hs.155017	NM_003489	HPRD:03927	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_11282	chr1	240855461	240855605	+	7.82273	NA	Intergenic	Intergenic	-80071	NM_022469	64388	Hs.98206	NM_022469	HPRD:16390	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_43192	chr17	70026620	70026804	+	7.82273	NA	promoter-TSS (NR_110132)	promoter-TSS (NR_110132)	-83	NR_110124	102606463	Hs.512309	NR_110124		LINC01152	CMPD|TCONS_00025128	long intergenic non-protein coding RNA 1152	ncRNA
19-PTNLD28-TUMOR_peak_30862	chr14	67654674	67654798	+	7.82273	NA	Intergenic	L2c|LINE|L2	-1374	NM_173526	161142	Hs.412818	NM_173526	HPRD:12653	FAM71D	C14orf54	family with sequence similarity 71, member D	protein-coding
19-PTNLD28-TUMOR_peak_34546	chr15	75430619	75430815	+	7.82273	NA	Intergenic	Intergenic	-63504	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_78077	chr4	174430722	174430851	+	7.82273	NA	Intergenic	CpG	20592	NM_021973	9464	Hs.388245	NM_021973	HPRD:03872	HAND2	DHAND2|Hed|Thing2|bHLHa26|dHand	heart and neural crest derivatives expressed 2	protein-coding
19-PTNLD28-TUMOR_peak_66307	chr3	5638028	5638125	+	7.82273	NA	Intergenic	L1PA5|LINE|L1	-346136	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_88895	chr6	100883317	100883461	+	7.82273	NA	intron (NM_005068, intron 8 of 10)	intron (NM_005068, intron 8 of 10)	28162	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_83459	chr5	156575943	156576089	+	7.82273	NA	Intergenic	Intergenic	-6095	NM_004270	9443	Hs.279902	NM_004270	HPRD:05439	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
19-PTNLD28-TUMOR_peak_95026	chr7	126084183	126084271	+	7.82273	NA	intron (NR_028041, intron 10 of 10)	intron (NR_028041, intron 10 of 10)	614011	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_53862	chr2	86199666	86199760	+	7.82273	NA	Intergenic	LOR1b|LTR|ERV1	51278	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
19-PTNLD28-TUMOR_peak_93793	chr7	86866260	86866423	+	7.82273	NA	Intergenic	Intergenic	-17310	NM_024315	79161	Hs.619593	NM_024315	HPRD:12911	TMEM243	C7orf23|MM-TRAG	transmembrane protein 243, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_103932	chr9	78647123	78647243	+	7.82273	NA	intron (NR_120409, intron 5 of 19)	L2b|LINE|L2	141623	NM_001190482	5125	Hs.368542	NM_006200	HPRD:08985	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
19-PTNLD28-TUMOR_peak_85232	chr6	9062958	9063083	+	7.82273	NA	Intergenic	Intergenic	410578	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_81893	chr5	125036120	125036220	+	7.82273	NA	Intergenic	Intergenic	207216	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
19-PTNLD28-TUMOR_peak_94667	chr7	105221845	105221980	+	7.82273	NA	promoter-TSS (NR_027068)	promoter-TSS (NR_027068)	64	NR_027068	100130771	Hs.719432	NR_027068	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	ncRNA
19-PTNLD28-TUMOR_peak_25030	chr12	65904604	65904732	+	7.82273	NA	intron (NR_120432, intron 4 of 4)	intron (NR_120432, intron 4 of 4)	131484	NR_120433	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_46050	chr18	59236508	59236608	+	7.82273	NA	Intergenic	Intergenic	78783	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_68723	chr3	63329492	63329757	+	7.82273	NA	intron (NM_001130003, intron 2 of 5)	intron (NM_001130003, intron 2 of 5)	65710	NM_001130003	132204	Hs.648668	NM_144642	HPRD:15458	SYNPR	SPO	synaptoporin	protein-coding
19-PTNLD28-TUMOR_peak_96852	chr8	599757	599977	+	7.82273	NA	Intergenic	Intergenic	81359	NM_207332	157697	Hs.655310	NM_207332	HPRD:14105	ERICH1	-	glutamate-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_31188	chr14	72992717	72992857	+	7.82273	NA	intron (NM_001204420, intron 14 of 15)	intron (NM_001204420, intron 14 of 15)	9259	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_107930	chrX	37431508	37431768	+	7.82273	NA	exon (NM_001170331, exon 1 of 5)	exon (NM_001170331, exon 1 of 5)	816	NM_198511	347404	Hs.521932	NM_198511	HPRD:13957	LANCL3	-	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding
19-PTNLD28-TUMOR_peak_53978	chr2	88135056	88135232	+	7.82273	NA	intron (NM_001024457, intron 1 of 22).2	LTR4|LTR|ERV1	-9858	NM_001078170	729857	Hs.652430	NM_001078170		RGPD2	NUP358|RANBP2L2|RGP2	RANBP2-like and GRIP domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_29421	chr14	22706279	22706454	+	7.82273	NA	Intergenic	HERV17-int|LTR|ERV1	351777	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_77081	chr4	130833377	130833521	+	7.82273	NA	Intergenic	Intergenic	-140816	NR_110753	101927282	Hs.407480	NR_110753	ENSG00000246876	LOC101927282	-	uncharacterized LOC101927282	ncRNA
19-PTNLD28-TUMOR_peak_4389	chr1	76320773	76320863	+	7.82273	NA	intron (NM_002440, intron 8 of 19)	AluJr4|SINE|Alu	58262	NM_002440	4438	Hs.216639	NM_002440	HPRD:03658	MSH4	-	mutS homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_57981	chr2	206110642	206110730	+	7.82273	NA	intron (NM_057177, intron 16 of 21)	intron (NM_057177, intron 16 of 21)	-436538	NM_201266	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_69450	chr3	100791223	100791382	+	7.82273	NA	Intergenic	Intergenic	-78968	NM_015429	25890	Hs.477015	NM_015429	HPRD:09380	ABI3BP	NESHBP|TARSH	ABI family, member 3 (NESH) binding protein	protein-coding
19-PTNLD28-TUMOR_peak_77600	chr4	152490910	152491114	+	7.82273	NA	intron (NM_001109977, intron 4 of 13)	intron (NM_001109977, intron 4 of 13)	160614	NM_001109977	729830	Hs.633810	NM_001109977	ENSG00000164142	FAM160A1	-	family with sequence similarity 160, member A1	protein-coding
19-PTNLD28-TUMOR_peak_102914	chr9	36023512	36023616	+	7.82273	NA	Intergenic	Intergenic	-13346	NM_021111	8434	Hs.388918	NM_021111	HPRD:05567	RECK	ST15	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding
19-PTNLD28-TUMOR_peak_100512	chr8	124217509	124217656	+	7.82273	NA	intron (NM_207006, intron 4 of 5)	intron (NM_207006, intron 4 of 5)	-2599	NR_024479	100131726	Hs.660862	NR_024479	ENSG00000204949	FAM83A-AS1	HCCC11|HCCC11_v1|HCCC11_v2	FAM83A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_106107	chr9	129174045	129174281	+	7.82273	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	-1380	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
19-PTNLD28-TUMOR_peak_35170	chr15	90418349	90418437	+	7.82273	NA	intron (NR_037582, intron 3 of 5)	intron (NR_037582, intron 3 of 5)	19224	NR_023361	10239	Hs.632161	NM_005829	HPRD:03880	AP3S2	AP3S3|sigma3b	adaptor-related protein complex 3, sigma 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_26916	chr12	123956382	123956486	+	7.82273	NA	non-coding (NR_104103, exon 2 of 2)	non-coding (NR_104103, exon 2 of 2)	12183	NM_180699	11066	Hs.632738	NM_007020		SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein 35kDa (U11/U12)	protein-coding
19-PTNLD28-TUMOR_peak_63498	chr21	39591102	39591274	+	7.82273	NA	Intergenic	Intergenic	-10649	NM_001276439	3772	Hs.411299	NM_002243	HPRD:03659	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
19-PTNLD28-TUMOR_peak_20736	chr11	95970940	95971054	+	7.82273	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-103605	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_99360	chr8	83775075	83775180	+	7.82273	NA	Intergenic	MER54B|LTR|ERVL	-540866	NR_122034	103352670	Hs.399852	NR_122034		LINC01419	TCONS_00014497	long intergenic non-protein coding RNA 1419	ncRNA
19-PTNLD28-TUMOR_peak_34944	chr15	84540731	84540838	+	7.82273	NA	intron (NM_001301110, intron 9 of 29)	intron (NM_001301110, intron 9 of 29)	-208155	NR_036652	648809	Hs.585157	NR_036652		EFTUD1P1	FAM42B|HsT19321	elongation factor Tu GTP binding domain containing 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_108858	chrX	83756801	83756990	+	7.82273	NA	intron (NM_001177478, intron 1 of 9)	intron (NM_001177478, intron 1 of 9)	592	NM_001177479	139324	Hs.559546	NM_144657	HPRD:06550	HDX	CXorf43|D030011N01Rik	highly divergent homeobox	protein-coding
19-PTNLD28-TUMOR_peak_32792	chr15	30241658	30241812	+	7.82273	NA	intron (NM_001301025, intron 2 of 28)	(CCA)n|Simple_repeat|Simple_repeat	19267	NM_001301025	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_88903	chr6	101605560	101605659	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-241252	NM_175768	2898	Hs.98262	NM_021956	HPRD:00692	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate receptor, ionotropic, kainate 2	protein-coding
19-PTNLD28-TUMOR_peak_59841	chr20	12034116	12034256	+	7.82273	NA	Intergenic	Intergenic	135673	NM_014962	22903	Hs.709366	NM_014962	HPRD:12538	BTBD3	dJ742J24.1	BTB (POZ) domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_34266	chr15	70414074	70414275	+	7.82273	NA	Intergenic	Intergenic	-23918	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_81081	chr5	88909169	88909301	+	7.82273	NA	Intergenic	Intergenic	403302	NR_037433	100500825		NR_037433	miRBase:MI0016061	MIR3660	-	microRNA 3660	ncRNA
19-PTNLD28-TUMOR_peak_44612	chr18	11902675	11902774	+	7.82273	NA	intron (NM_001242904, intron 1 of 7)	intron (NM_001242904, intron 1 of 7)	6072	NM_001242904	65258	Hs.712666	NM_023075	HPRD:14734	MPPE1	PGAP5	metallophosphoesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_69328	chr3	93988727	93988815	+	7.82273	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-206704	NM_001195643	200895	Hs.718516	NM_176815	HPRD:11246	DHFRL1	DHFRP4	dihydrofolate reductase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_8295	chr1	174160836	174160981	+	7.82273	NA	intron (NM_014857, intron 1 of 20)	intron (NM_014857, intron 1 of 20)	32356	NM_014857	9910	Hs.585378	NM_014857	HPRD:16464	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_28151	chr13	47012171	47012458	+	7.82273	NA	Intergenic	CpG	28597	NR_120426	101929344	Hs.491939	NR_120426		LINC01198	-	long intergenic non-protein coding RNA 1198	ncRNA
19-PTNLD28-TUMOR_peak_104943	chr9	101420210	101420405	+	7.82273	NA	intron (NM_005458, intron 1 of 18)	intron (NM_005458, intron 1 of 18)	51172	NM_005458	9568	Hs.198612	NM_005458	HPRD:09552	GABBR2	GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_23240	chr12	15114157	15114517	+	7.82273	NA	intron (NM_001175, intron 1 of 5)	intron (NM_001175, intron 1 of 5)	225	NM_001175	397	Hs.504877	NM_001175	HPRD:04162	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor (GDI) beta	protein-coding
19-PTNLD28-TUMOR_peak_22868	chr12	7351950	7352038	+	7.82273	NA	intron (NM_001300789, intron 6 of 15)	SVA_D|Other|Other	9036	NM_000319	5830	Hs.567327	NM_000319	HPRD:02684	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1	peroxisomal biogenesis factor 5	protein-coding
19-PTNLD28-TUMOR_peak_69651	chr3	108634016	108634104	+	7.82273	NA	intron (NM_005459, intron 3 of 3)	intron (NM_005459, intron 3 of 3)	38617	NM_005459	9626	Hs.233363	NM_005459	HPRD:05499	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
19-PTNLD28-TUMOR_peak_63623	chr21	42053825	42053966	+	7.82273	NA	intron (NR_073202, intron 3 of 32)	MLT1C|LTR|ERVL-MaLR	-51202	NR_046774	100874326	Hs.679746	NR_046774		DSCAM-IT1	zag4	DSCAM intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_34808	chr15	81558895	81558983	+	7.82273	NA	intron (NM_001172128, intron 4 of 18)	intron (NM_001172128, intron 4 of 18)	-30315	NM_004513	3603	Hs.459095	NM_004513	HPRD:04329	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
19-PTNLD28-TUMOR_peak_75913	chr4	80885874	80886159	+	7.82273	NA	intron (NM_001286781, intron 16 of 16)	CpG	108461	NM_001286781	118429	Hs.162963	NM_058172	HPRD:07452	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	anthrax toxin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_100540	chr8	124629693	124629841	+	7.82273	NA	Intergenic	MER5B|DNA|hAT-Charlie	35423	NM_001081675	340359	Hs.450252	NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch-like family member 38	protein-coding
19-PTNLD28-TUMOR_peak_88867	chr6	99683257	99683418	+	7.82273	NA	Intergenic	Intergenic	114194	NM_032511	84553	Hs.573245	NM_032511	HPRD:12866	FAXC	C6orf168|dJ273F20	failed axon connections homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_68984	chr3	71803186	71803708	+	7.82273	NA	promoter-TSS (NM_001282886)	promoter-TSS (NM_001282886)	87	NM_001134649	317649	Hs.581355	NM_173359	HPRD:10687	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
19-PTNLD28-TUMOR_peak_27112	chr12	127765402	127765626	+	7.82273	NA	Intergenic	CpG	59103	NR_110057	101927616	Hs.637827	NR_110057	ENSG00000256362	LOC101927616	-	uncharacterized LOC101927616	ncRNA
19-PTNLD28-TUMOR_peak_70080	chr3	120096897	120097043	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	17606	NR_029584	406975		NR_029584		MIR198	MIRN198|miR-198	microRNA 198	ncRNA
19-PTNLD28-TUMOR_peak_98936	chr8	60579049	60579137	+	7.82273	NA	Intergenic	L2|LINE|L2	-547326	NM_014729	9760	Hs.491805	NM_014729	HPRD:12113	TOX	TOX1	thymocyte selection-associated high mobility group box	protein-coding
19-PTNLD28-TUMOR_peak_47642	chr19	14561397	14561609	+	7.82273	NA	intron (NM_002741, intron 5 of 21)	intron (NM_002741, intron 5 of 21)	10417	NM_213560	5585	Hs.466044	NM_002741	HPRD:03019	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
19-PTNLD28-TUMOR_peak_24888	chr12	61199394	61199499	+	7.82273	NA	Intergenic	Intergenic	1116328	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_81414	chr5	104854493	104854716	+	7.82273	NA	Intergenic	L1HS|LINE|L1	419429	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_75556	chr4	67648950	67649038	+	7.82273	NA	Intergenic	L1P1|LINE|L1	638724	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_5143	chr1	100010131	100010248	+	7.82273	NA	Intergenic	Intergenic	-101242	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_20577	chr11	92870236	92870345	+	7.82273	NA	Intergenic	L1HS|LINE|L1	60331	NM_001286139	120103	Hs.148766	NM_152313		SLC36A4	PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_31633	chr14	90439740	90439857	+	7.82273	NA	intron (NM_001008744, intron 5 of 15)	intron (NM_001008744, intron 5 of 15)	17552	NM_018319	55775	Hs.209945	NM_018319	HPRD:06226	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_29340	chr14	21121179	21121477	+	7.82273	NA	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-11478	NM_001001968	341799	Hs.513132	NM_001001968	HPRD:17779	OR6S1	OR14-37|OR6S1Q	olfactory receptor, family 6, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_45916	chr18	55755195	55755460	+	7.82273	NA	intron (NM_001144964, intron 1 of 30)	MLT1F|LTR|ERVL-MaLR	40869	NM_001144964	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_70740	chr3	129451400	129451560	+	7.82273	NA	intron (NM_001017395, intron 3 of 5)	L1MD2|LINE|L1	-43905	NR_033361	23023	Hs.477547	NM_015008	HPRD:15518	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
19-PTNLD28-TUMOR_peak_89200	chr6	116281648	116281736	+	7.82273	NA	intron (NM_002031, intron 4 of 7)	L1PA2|LINE|L1	-78202	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_7759	chr1	162246442	162246530	+	7.82273	NA	intron (NM_001164757, intron 2 of 9)	intron (NM_001164757, intron 2 of 9)	-65850	NR_030283	693141		NR_030283		MIR556	MIRN556|hsa-mir-556	microRNA 556	ncRNA
19-PTNLD28-TUMOR_peak_65365	chr22	37153695	37153884	+	7.82273	NA	TTS (NM_001177701)	TTS (NM_001177701)	18388	NM_006860	11020	Hs.415172	NM_006860	ENSG00000100360	IFT27	BBS19|RABL4|RAYL	intraflagellar transport 27	protein-coding
19-PTNLD28-TUMOR_peak_76782	chr4	119937883	119938034	+	7.82273	NA	intron (NM_001128934, intron 1 of 4)	intron (NM_001128934, intron 1 of 4)	-118981	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_92166	chr7	42447589	42447687	+	7.82273	NA	Intergenic	Intergenic	-171020	NM_000168	2737	Hs.21509	NM_000168	HPRD:01313	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_11757	chr10	4394075	4394174	+	7.82273	NA	Intergenic	MER34A1|LTR|ERV1	-32314	NR_108055	100507059	Hs.158438	NR_108054		LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA
19-PTNLD28-TUMOR_peak_77418	chr4	146052320	146052414	+	7.82273	NA	Intergenic	Intergenic	-32674	NM_001256708	10393	Hs.480876	NM_014885		ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
19-PTNLD28-TUMOR_peak_17703	chr11	26799618	26799725	+	7.82273	NA	Intergenic	Intergenic	-56097	NM_178498	159963	Hs.148907	NM_178498	HPRD:15395	SLC5A12	SMCT2	solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_71819	chr3	153470532	153470662	+	7.82273	NA	Intergenic	Intergenic	268313	NM_001101337	152118	Hs.58586	NM_001101337	ENSG00000237787	C3orf79	-	chromosome 3 open reading frame 79	protein-coding
19-PTNLD28-TUMOR_peak_32903	chr15	32343411	32343515	+	7.82273	NA	intron (NM_001190455, intron 2 of 9)	L1PA4|LINE|L1	20777	NR_046324	1139	Hs.511772	NM_000746		CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor, nicotinic, alpha 7 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_31587	chr14	88633023	88633247	+	7.82273	NA	Intergenic	Intergenic	104120	NM_138318	54207	Hs.560255	NM_021161		KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium channel, subfamily K, member 10	protein-coding
19-PTNLD28-TUMOR_peak_107882	chrX	30894211	30894325	+	7.82273	NA	intron (NM_152787, intron 1 of 10)	L1ME3A|LINE|L1	13243	NM_152787	257397	Hs.188256	NM_152787	HPRD:06738	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_66821	chr3	14425881	14426006	+	7.82273	NA	Intergenic	MIR|SINE|MIR	-18133	NR_103507	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_90095	chr6	152593339	152593500	+	7.82273	NA	intron (NM_182961, intron 98 of 145)	intron (NM_182961, intron 98 of 145)	-108246	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69077	chr3	73551975	73552063	+	7.82273	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-18454	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_35151	chr15	90016135	90016271	+	7.82273	NA	intron (NM_016321, intron 9 of 10)	intron (NM_016321, intron 9 of 10)	23641	NM_016321	51458	Hs.459284	NM_016321	HPRD:16102	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family, C glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_51599	chr2	25391333	25391481	+	7.82273	NA	5' UTR (NM_000939, exon 1 of 3)	5' UTR (NM_000939, exon 1 of 3)	152	NM_000939	5443	Hs.1897	NM_000939	HPRD:01462	POMC	ACTH|CLIP|LPH|MSH|NPP|POC	proopiomelanocortin	protein-coding
19-PTNLD28-TUMOR_peak_16970	chr11	8554980	8555068	+	7.82273	NA	5' UTR (NM_030906, exon 2 of 14)	5' UTR (NM_030906, exon 2 of 14)	60531	NM_001289061	65975	Hs.501833	NM_030906	HPRD:09642	STK33	-	serine/threonine kinase 33	protein-coding
19-PTNLD28-TUMOR_peak_8872	chr1	185529136	185529224	+	7.82273	NA	intron (NR_110793, intron 3 of 3)	intron (NR_110793, intron 3 of 3)	68440	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
19-PTNLD28-TUMOR_peak_34238	chr15	69956899	69957045	+	7.82273	NA	Intergenic	Intergenic	102913	NR_026979	145837	Hs.410126	NR_026979		LOC145837	-	uncharacterized LOC145837	ncRNA
19-PTNLD28-TUMOR_peak_109025	chrX	103086669	103086832	+	7.82273	NA	intron (NM_016370, intron 1 of 2)	intron (NM_016370, intron 1 of 2)	462	NM_016370	51209	Hs.522736	NM_016370	HPRD:02237	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_35098	chr15	88994983	88995071	+	7.82273	NA	Intergenic	AluY|SINE|Alu	15606	NM_022163	26589	Hs.534261	NM_022163	HPRD:14765	MRPL46	C15orf4|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding
19-PTNLD28-TUMOR_peak_109241	chrX	115371195	115371289	+	7.82273	NA	Intergenic	Intergenic	69284	NM_000686	186	Hs.405348	NM_000686	HPRD:02071	AGTR2	AT2|ATGR2|MRX88	angiotensin II receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_57231	chr2	179779132	179779231	+	7.82273	NA	intron (NM_173648, intron 7 of 23)	intron (NM_173648, intron 7 of 23)	-107031	NM_001267550	7273	Hs.134602	NM_003319	HPRD:01787	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding
19-PTNLD28-TUMOR_peak_80608	chr5	72454260	72454402	+	7.82273	NA	Intergenic	Intergenic	-14692	NM_153217	134288	Hs.508588	NM_153217	HPRD:14432	TMEM174	-	transmembrane protein 174	protein-coding
19-PTNLD28-TUMOR_peak_28656	chr13	91137867	91138007	+	7.82273	NA	Intergenic	Intergenic	-7605	NR_120414	101927224	Hs.385801	NR_120414		LINC01049	-	long intergenic non-protein coding RNA 1049	ncRNA
19-PTNLD28-TUMOR_peak_40141	chr17	9062226	9062331	+	7.82273	NA	intron (NM_004822, intron 2 of 6)	intron (NM_004822, intron 2 of 6)	20157	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_45261	chr18	34527814	34528061	+	7.82273	NA	intron (NM_020776, intron 5 of 9)	MER4D1|LTR|ERV1	-118758	NM_015476	25941	Hs.436636	NM_015476	HPRD:12684	TPGS2	C18orf10|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_5666	chr1	114417286	114417419	+	7.82273	NA	intron (NR_037864, intron 3 of 4)	intron (NR_037864, intron 3 of 4)	-2977	NM_001193431	26191	Hs.535276	NM_012411	HPRD:06100	PTPN22	LYP|LYP1|LYP2|PEP|PTPN8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding
19-PTNLD28-TUMOR_peak_75528	chr4	63598148	63598255	+	7.82273	NA	Intergenic	L1HS|LINE|L1	-570718	NR_110595	101927186	Hs.723269	NR_110595		LPHN3-AS1	-	LPHN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29895	chr14	35684474	35684562	+	7.82273	NA	intron (NM_001256680, intron 4 of 6)	intron (NM_001256680, intron 4 of 6)	-63246	NM_001282234	5687	Hs.446260	NM_002791	HPRD:04171	PSMA6	IOTA|PROS27|p27K	proteasome (prosome, macropain) subunit, alpha type, 6	protein-coding
19-PTNLD28-TUMOR_peak_99185	chr8	73163810	73164014	+	7.82273	NA	promoter-TSS (NR_033867)	promoter-TSS (NR_033867)	-43	NR_033867	392232	Hs.454043	NR_033867	ENSG00000250979	LOC392232	-	transient receptor potential cation channel, subfamily A, member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58593	chr2	223784644	223784808	+	7.82273	NA	intron (NM_004457, intron 7 of 16)	L2|LINE|L2	58994	NM_203372	2181	Hs.655772	NM_004457		ACSL3	ACS3|FACL3|PRO2194	acyl-CoA synthetase long-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_109099	chrX	106928287	106928516	+	7.82273	NA	Intergenic	Intergenic	31310	NM_001015881	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_67933	chr3	46607761	46608057	+	7.82273	NA	5' UTR (NM_024512, exon 1 of 9)	5' UTR (NM_024512, exon 1 of 9)	131	NM_024512	79442	Hs.657345	NM_024512	HPRD:06213	LRRC2	-	leucine rich repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89629	chr6	137933737	137933825	+	7.82273	NA	Intergenic	Intergenic	-118250	NM_175747	167826	Hs.195398	NM_175747	HPRD:17662	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_55728	chr2	131678140	131678233	+	7.82273	NA	intron (NM_032995, intron 1 of 11)	intron (NM_032995, intron 1 of 11)	3216	NM_032995	50649	Hs.469935	NM_015320	HPRD:05559	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_75123	chr4	47034787	47034880	+	7.82273	NA	intron (NM_000812, intron 3 of 8)	CpG-19787	1538	NM_000812	2560	Hs.27283	NM_000812	HPRD:15924	GABRB1	-	gamma-aminobutyric acid (GABA) A receptor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_85249	chr6	9811477	9811590	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-601018	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22562	chr12	3731357	3731471	+	7.82273	NA	intron (NM_001144958, intron 17 of 19)	intron (NM_001144958, intron 17 of 19)	130952	NM_001144958	84766	Hs.504534	NM_032680	HPRD:10079	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
19-PTNLD28-TUMOR_peak_102485	chr9	22052618	22052868	+	7.82273	NA	intron (NR_120536, intron 3 of 3)	intron (NR_120536, intron 3 of 3)	-43431	NM_078487	1030	Hs.72901	NM_004936	HPRD:02696	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_83564	chr5	158937422	158937572	+	7.82273	NA	Intergenic	Intergenic	-44213	NR_027110	285627	Hs.552766	NR_027110	ENSG00000253298	LOC285627	-	uncharacterized LOC285627	ncRNA
19-PTNLD28-TUMOR_peak_8838	chr1	184864340	184864469	+	7.82273	NA	intron (NM_052966, intron 2 of 13)	intron (NM_052966, intron 2 of 13)	79314	NM_052966	116496	Hs.518662	NM_052966	HPRD:10725	FAM129A	C1orf24|NIBAN	family with sequence similarity 129, member A	protein-coding
19-PTNLD28-TUMOR_peak_20945	chr11	106063911	106064093	+	7.82273	NA	Intergenic	AluSq2|SINE|Alu	-56744	NR_120552	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
19-PTNLD28-TUMOR_peak_77891	chr4	163569320	163569461	+	7.82273	NA	Intergenic	AluYc|SINE|Alu	-484204	NM_001128427	56884	Hs.32452	NM_020116	HPRD:10998	FSTL5	-	follistatin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_77557	chr4	151182941	151183043	+	7.82273	NA	Intergenic	Intergenic	183566	NR_036614	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_87342	chr6	40276513	40276682	+	7.82273	NA	Intergenic	Intergenic	47148	NR_038887	401260	Hs.654837	NM_001001705		LINC00951	-	long intergenic non-protein coding RNA 951	ncRNA
19-PTNLD28-TUMOR_peak_94730	chr7	106249978	106250137	+	7.82273	NA	Intergenic	MLT2B4|LTR|ERVL	51577	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_29736	chr14	31962092	31962219	+	7.82273	NA	Intergenic	L1PBa1|LINE|L1	-5004	NM_001197184	2856	Hs.727479	NM_001197184		GPR33	-	G protein-coupled receptor 33 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_30612	chr14	60618528	60618755	+	7.82273	NA	intron (NM_016029, intron 4 of 6)	intron (NM_016029, intron 4 of 6)	13570	NM_016029	51635	Hs.59719	NM_016029	HPRD:16802	DHRS7	SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase (SDR family) member 7	protein-coding
19-PTNLD28-TUMOR_peak_77877	chr4	161046825	161046931	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	857880	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_31594	chr14	89126522	89126666	+	7.82273	NA	intron (NM_183387, intron 25 of 42)	AluJb|SINE|Alu	65864	NM_207662	79882	Hs.686171	NM_024824	HPRD:13348	ZC3H14	MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
19-PTNLD28-TUMOR_peak_81064	chr5	88025544	88025639	+	7.82273	NA	intron (NM_001193348, intron 5 of 7)	intron (NM_001193348, intron 5 of 7)	-44971	NR_015436	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|Visc-1a|Visc-1b	long intergenic non-protein coding RNA 461	ncRNA
19-PTNLD28-TUMOR_peak_23614	chr12	31049353	31049732	+	7.82273	NA	Intergenic	Intergenic	-30296	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
19-PTNLD28-TUMOR_peak_27651	chr13	30475984	30476096	+	7.82273	NA	Intergenic	Intergenic	-13498	NR_046510	100874059	Hs.569261	NR_046510	ENSG00000224329	LINC00297	NCRNA00297	long intergenic non-protein coding RNA 297	ncRNA
19-PTNLD28-TUMOR_peak_71999	chr3	158309237	158309374	+	7.82273	NA	intron (NM_001130157, intron 2 of 7)	intron (NM_001130157, intron 2 of 7)	20352	NM_001195433	4291	Hs.85195	NM_022443	HPRD:03239	MLF1	-	myeloid leukemia factor 1	protein-coding
19-PTNLD28-TUMOR_peak_88890	chr6	100676947	100677048	+	7.82273	NA	Intergenic	CpG	234554	NM_005068	6492	Hs.520293	NM_005068	HPRD:07049	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_86428	chr6	30012482	30012591	+	7.82273	NA	intron (NR_026751, intron 3 of 5).6	MLT1N2|LTR|ERVL-MaLR	16425	NR_026751	80862	Hs.653168	NR_026751	ENSG00000204623	ZNRD1-AS1	C6orf12|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1AS	ZNRD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_47378	chr19	11992131	11992264	+	7.82273	NA	Intergenic	HERVI-int|LTR|ERV1	-6473	NM_021915	7620	Hs.661955	NM_021915	HPRD:11836	ZNF69	Cos5	zinc finger protein 69	protein-coding
19-PTNLD28-TUMOR_peak_1430	chr1	23188658	23188792	+	7.82273	NA	TTS (NR_036214)	TTS (NR_036214)	994	NR_036214	100422914		NR_036214	miRBase:MI0015860	MIR4253	-	microRNA 4253	ncRNA
19-PTNLD28-TUMOR_peak_56402	chr2	154464589	154464720	+	7.82273	NA	Intergenic	Intergenic	-129332	NM_019845	56475	Hs.100890	NM_019845	HPRD:18002	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
19-PTNLD28-TUMOR_peak_77706	chr4	154570736	154570850	+	7.82273	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-34648	NM_003264	7097	Hs.519033	NM_003264		TLR2	CD282|TIL4	toll-like receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_13971	chr10	69895718	69895808	+	7.82273	NA	intron (NM_001256268, intron 4 of 23)	intron (NM_001256268, intron 4 of 23)	26573	NM_001256268	84665	Hs.55205	NM_032578	HPRD:10536	MYPN	CMD1DD|CMH22|MYOP|RCM4	myopalladin	protein-coding
19-PTNLD28-TUMOR_peak_88081	chr6	54721025	54721200	+	7.82273	NA	intron (NM_001010872, intron 1 of 4)	intron (NM_001010872, intron 1 of 4)	9543	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_100052	chr8	108498110	108498260	+	7.82273	NA	intron (NM_001199859, intron 1 of 8)	intron (NM_001199859, intron 1 of 8)	12069	NM_001146	284	Hs.369675	NM_001146	HPRD:03392	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding
19-PTNLD28-TUMOR_peak_53523	chr2	74198243	74198358	+	7.82273	NA	intron (NR_104030, intron 1 of 1)	intron (NR_104030, intron 1 of 1)	10266	NR_104029	100874048	Hs.600674	NR_104029	ENSG00000237883	DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56859	chr2	169903456	169903544	+	7.82273	NA	Intergenic	L1M1|LINE|L1	-15667	NM_003742	8647	Hs.658439	NM_003742	HPRD:04436	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP-binding cassette, sub-family B (MDR/TAP), member 11	protein-coding
19-PTNLD28-TUMOR_peak_76235	chr4	89606002	89606092	+	7.82273	NA	intron (NM_014606, intron 21 of 25)	U6|snRNA|snRNA	12976	NM_153757	266812	Hs.12554	NM_153757	HPRD:17626	NAP1L5	DRLM	nucleosome assembly protein 1-like 5	protein-coding
19-PTNLD28-TUMOR_peak_89601	chr6	137289414	137289511	+	7.82273	NA	Intergenic	Intergenic	24906	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA
19-PTNLD28-TUMOR_peak_100668	chr8	126354545	126354658	+	7.82273	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	-87962	NM_025195	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_75855	chr4	78915730	78915824	+	7.82273	NA	Intergenic	Intergenic	-62947	NM_025074	80144	Hs.369448	NM_020875	HPRD:06382	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_63111	chr21	32148422	32148590	+	7.82273	NA	Intergenic	Intergenic	-20810	NM_181619	337977	Hs.567837	NM_181619		KRTAP21-1	KAP21.1	keratin associated protein 21-1	protein-coding
19-PTNLD28-TUMOR_peak_94886	chr7	114541951	114542124	+	7.82273	NA	Intergenic	MLT2A2|LTR|ERVL	-20172	NM_001166346	29969	Hs.741413	NM_199072	HPRD:17103	MDFIC	HIC	MyoD family inhibitor domain containing	protein-coding
19-PTNLD28-TUMOR_peak_69435	chr3	99816975	99817084	+	7.82273	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	16328	NM_182909	11259	Hs.104672	NM_014890	HPRD:16832	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_74630	chr4	16003144	16003355	+	7.82273	NA	intron (NM_001145848, intron 12 of 26)	L2|LINE|L2	-38390	NM_031950	83888	Hs.98785	NM_031950	HPRD:07413	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_110317	chrY	26635340	26635540	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	3961	NR_002179	474152	Hs.741142	NR_002179	ENSG00000223641	TTTY17C	NCRNA00142	testis-specific transcript, Y-linked 17C (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16090	chr10	125511326	125511454	+	7.82273	NA	intron (NM_198148, intron 13 of 13)	intron (NM_198148, intron 13 of 13)	85519	NM_153442	2849	Hs.12751	NM_153442		GPR26	-	G protein-coupled receptor 26	protein-coding
19-PTNLD28-TUMOR_peak_13855	chr10	63984488	63984673	+	7.82273	NA	intron (NM_145307, intron 6 of 11)	L2a|LINE|L2	44042	NM_145307	219790	Hs.58559	NM_145307	HPRD:17863	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
19-PTNLD28-TUMOR_peak_89275	chr6	119227140	119227236	+	7.82273	NA	intron (NM_014034, intron 3 of 3)	intron (NM_014034, intron 3 of 3)	11947	NM_014034	25842	Hs.292316	NM_014034	HPRD:16459	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
19-PTNLD28-TUMOR_peak_17399	chr11	15685337	15685720	+	7.82273	NA	intron (NM_001293172, intron 1 of 2)	MIRc|SINE|MIR	20097	NM_001293172	102724957	Hs.512245	NM_001293172		LOC102724957	-	uncharacterized LOC102724957	protein-coding
19-PTNLD28-TUMOR_peak_39032	chr16	83671082	83671170	+	7.82273	NA	intron (NM_001220488, intron 9 of 14)	L1HS|LINE|L1	129175	NR_036147	100422853		NR_036147		MIR3182	-	microRNA 3182	ncRNA
19-PTNLD28-TUMOR_peak_41029	chr17	32367306	32367407	+	7.82273	NA	intron (NM_001094, intron 1 of 9)	CpG	116469	NM_001094	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_83416	chr5	154351190	154351314	+	7.82273	NA	Intergenic	LTR33C|LTR|ERVL	30619	NM_014180	29093	Hs.483924	NM_014180	HPRD:14748	MRPL22	L22mt|MRP-L22|MRP-L25|RPML25	mitochondrial ribosomal protein L22	protein-coding
19-PTNLD28-TUMOR_peak_97304	chr8	16689281	16689369	+	7.82273	NA	Intergenic	Intergenic	170349	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_12302	chr10	21433104	21433193	+	7.82273	NA	intron (NM_001177483, intron 1 of 1)	intron (NM_001177483, intron 1 of 1)	2340	NM_001010896	387638	Hs.664110	NM_001010896	HPRD:16573	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding
19-PTNLD28-TUMOR_peak_34901	chr15	83518573	83518672	+	7.82273	NA	exon (NM_004839, exon 9 of 9)	exon (NM_004839, exon 9 of 9)	40242	NM_001080435	123720	Hs.377360	NM_001080435	ENSG00000156232	WHAMM	WHDC1	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding
19-PTNLD28-TUMOR_peak_77815	chr4	158886059	158886199	+	7.82273	NA	Intergenic	Intergenic	207589	NM_016613	51313	Hs.567498	NM_016613	HPRD:13194	FAM198B	AD036|C4orf18	family with sequence similarity 198, member B	protein-coding
19-PTNLD28-TUMOR_peak_90473	chr6	166559385	166559559	+	7.82273	NA	Intergenic	Intergenic	22685	NM_001270484	6862	Hs.389457	NM_003181	HPRD:03236	T	SAVA|TFT	T, brachyury homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_76748	chr4	119331367	119331541	+	7.82273	NA	Intergenic	Intergenic	-57532	NM_003619	8492	Hs.445857	NM_003619	HPRD:05989	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine, 12 (neurotrypsin, motopsin)	protein-coding
19-PTNLD28-TUMOR_peak_4424	chr1	77424576	77424678	+	7.82273	NA	intron (NM_030965, intron 2 of 4)	L1MC4|LINE|L1	91441	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_63746	chr21	43678781	43678989	+	7.82273	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	38877	NM_207174	9619	Hs.124649	NM_004915	HPRD:04355	ABCG1	ABC8|WHITE1	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding
19-PTNLD28-TUMOR_peak_50778	chr2	1392090	1392386	+	7.82273	NA	Intergenic	L1PA5|LINE|L1	-24995	NM_001206744	7173	Hs.467554	NM_000547	HPRD:06000	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_94710	chr7	105863808	105863912	+	7.82273	NA	Intergenic	Intergenic	61778	NM_005746	10135	Hs.489615	NM_005746	HPRD:09938	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_31720	chr14	92413804	92414041	+	7.82273	NA	5' UTR (NM_006329, exon 1 of 11)	5' UTR (NM_006329, exon 1 of 11)	124	NM_006329	10516	Hs.332708	NM_006329	HPRD:05204	FBLN5	ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|UP50	fibulin 5	protein-coding
19-PTNLD28-TUMOR_peak_69720	chr3	111386793	111386971	+	7.82273	NA	Intergenic	Intergenic	-6641	NM_001185106	257068	Hs.477114	NM_153268	HPRD:07114	PLCXD2	-	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_20763	chr11	96473442	96473561	+	7.82273	NA	Intergenic	Intergenic	-233460	NR_047481	100874053	Hs.742044	NR_047481		JRKL-AS1	-	JRKL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28058	chr13	44773680	44773895	+	7.82273	NA	Intergenic	Intergenic	-3451	NR_107046	102465876		NR_107046		MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
19-PTNLD28-TUMOR_peak_59447	chr20	1589774	1589865	+	7.82273	NA	intron (NM_001135844, intron 2 of 5)	intron (NM_001135844, intron 2 of 5)	10870	NM_006065	10326	Hs.664861	NM_006065	HPRD:04866	SIRPB1	CD172b|SIRP-BETA-1	signal-regulatory protein beta 1	protein-coding
19-PTNLD28-TUMOR_peak_81002	chr5	82182876	82183020	+	7.82273	NA	Intergenic	Intergenic	-27293	NR_105016	102546175		NR_105016		LINC01338	-	long intergenic non-protein coding RNA 1338	ncRNA
19-PTNLD28-TUMOR_peak_17584	chr11	19585698	19585825	+	7.82273	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	-11096	NR_039706	100616118		NR_039706		MIR4486	-	microRNA 4486	ncRNA
19-PTNLD28-TUMOR_peak_88857	chr6	98864427	98864671	+	7.82273	NA	Intergenic	L1PA2|LINE|L1	392142	NR_031579	100302164		NR_031579	miRBase:MI0003939	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
19-PTNLD28-TUMOR_peak_102249	chr9	15080123	15080222	+	7.82273	NA	Intergenic	LTR40c|LTR|ERVL	86847	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	chromosome 4 open reading frame 27 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99040	chr8	67372132	67372244	+	7.82273	NA	intron (NM_144650, intron 12 of 13)	intron (NM_144650, intron 12 of 13)	27470	NM_144650	137872	Hs.720023	NM_144650	HPRD:12428	ADHFE1	ADH8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding
19-PTNLD28-TUMOR_peak_14219	chr10	73364570	73364749	+	7.82273	NA	intron (NM_001171930, intron 9 of 30)	intron (NM_001171930, intron 9 of 30)	-92982	NR_120672	102723377	Hs.568789	NR_120672		LOC102723377	-	uncharacterized LOC102723377	ncRNA
19-PTNLD28-TUMOR_peak_10030	chr1	214595715	214595877	+	7.82273	NA	intron (NM_005401, intron 3 of 18)	intron (NM_005401, intron 3 of 18)	129228	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_45978	chr18	56743221	56743341	+	7.82273	NA	Intergenic	Intergenic	40310	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80251	chr5	64080383	64080478	+	7.82273	NA	intron (NM_001297645, intron 4 of 10)	intron (NM_001297645, intron 4 of 10)	15685	NM_001297644	10283	Hs.371372	NM_005869	HPRD:11541	CWC27	NY-CO-10|SDCCAG10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_87805	chr6	46594108	46594265	+	7.82273	NA	intron (NM_001278738, intron 6 of 11)	intron (NM_001278738, intron 6 of 11)	26381	NM_016593	51302	Hs.387367	NM_016593	HPRD:07067	CYP39A1	-	cytochrome P450, family 39, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_8540	chr1	179895716	179895811	+	7.82273	NA	Intergenic	Intergenic	-28145	NM_014810	9857	Hs.413045	NM_014810	HPRD:09870	CEP350	CAP350|GM133	centrosomal protein 350kDa	protein-coding
19-PTNLD28-TUMOR_peak_27097	chr12	127421287	127421449	+	7.82273	NA	intron (NR_104646, intron 4 of 6)	LTR1D|LTR|ERV1	-62132	NR_033970	440117	Hs.127100	NR_033970	ENSG00000249873	LOC440117	-	uncharacterized LOC440117	ncRNA
19-PTNLD28-TUMOR_peak_31706	chr14	92139579	92139845	+	7.82273	NA	intron (NM_024764, intron 12 of 26)	LOR1b|LTR|ERV1	58701	NM_024764	79820	Hs.131755	NM_024764	HPRD:16613	CATSPERB	C14orf161|CatSper(beta)	catsper channel auxiliary subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_28076	chr13	45097635	45097790	+	7.82273	NA	intron (NM_183422, intron 1 of 2)	L1MC2|LINE|L1	-49275	NM_001243798	8848	Hs.436383	NM_006022		TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_105648	chr9	117889470	117889725	+	7.82273	NA	non-coding (NR_110950, exon 3 of 6)	non-coding (NR_110950, exon 3 of 6)	-9061	NM_002160	3371	Hs.143250	NM_002160	HPRD:01756	TNC	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C	tenascin C	protein-coding
19-PTNLD28-TUMOR_peak_12584	chr10	27847578	27847676	+	7.82273	NA	Intergenic	Intergenic	54524	NM_001256412	22931	Hs.406799	NM_021252	HPRD:03731	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_7783	chr1	162848004	162848092	+	7.82273	NA	Intergenic	Intergenic	-9443	NM_178550	339512	Hs.407631	NM_178550	HPRD:14661	C1orf110	-	chromosome 1 open reading frame 110	protein-coding
19-PTNLD28-TUMOR_peak_72831	chr3	184988421	184988542	+	7.82273	NA	Intergenic	LTR75B|LTR|ERVL	-12248	NM_001242317	9175	Hs.591306	NM_004721	HPRD:05372	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_92944	chr7	66138090	66138268	+	7.82273	NA	Intergenic	Intergenic	-8899	NR_104676	27342	Hs.530053	NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_101951	chr9	1809449	1809537	+	7.82273	NA	Intergenic	AluYa5|SINE|Alu	-205726	NM_003070	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_13634	chr10	52898079	52898197	+	7.82273	NA	intron (NM_006258, intron 1 of 17)	intron (NM_006258, intron 1 of 17)	63904	NM_006258	5592	Hs.407535	NM_006258	HPRD:08910	PRKG1	1|AAT8|PKG|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase, cGMP-dependent, type I	protein-coding
19-PTNLD28-TUMOR_peak_71576	chr3	148838225	148838360	+	7.82273	NA	Intergenic	Intergenic	-9079	NM_032383	84343	Hs.558314	NM_032383	HPRD:05835	HPS3	SUTAL	Hermansky-Pudlak syndrome 3	protein-coding
19-PTNLD28-TUMOR_peak_57279	chr2	182123596	182123827	+	7.82273	NA	Intergenic	Intergenic	46668	NR_039637	100616213		NR_039637	miRBase:MI0016778	MIR4437	-	microRNA 4437	ncRNA
19-PTNLD28-TUMOR_peak_53659	chr2	79514795	79514953	+	7.82273	NA	Intergenic	L1PA3|LINE|L1	-127994	NM_138937	5068	Hs.567312	NM_002580	HPRD:01342	REG3A	HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3	regenerating islet-derived 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_36165	chr16	9278362	9278585	+	7.82259	NA	Intergenic	LTR12C|LTR|ERV1	-50301	NR_036166	100422920		NR_036166	miRBase:MI0014244	MIR548X	-	microRNA 548x	ncRNA
19-PTNLD28-TUMOR_peak_101977	chr9	2725231	2725623	+	7.82259	NA	intron (NM_133497, intron 1 of 1)	MARNA|DNA|TcMar-Mariner	7901	NM_133497	169522	Hs.622675	NM_133497	HPRD:12126	KCNV2	KV11.1|Kv8.2|RCD3B	potassium channel, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_79053	chr5	15015194	15015289	+	7.82259	NA	Intergenic	MIRb|SINE|MIR	-143354	NM_054027	56172	Hs.156727	NM_054027	HPRD:05509	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
19-PTNLD28-TUMOR_peak_36164	chr16	9277851	9278120	+	7.82259	NA	Intergenic	LTR12C|LTR|ERV1	-50789	NR_036166	100422920		NR_036166	miRBase:MI0014244	MIR548X	-	microRNA 548x	ncRNA
19-PTNLD28-TUMOR_peak_27728	chr13	31618595	31618760	+	7.82259	NA	Intergenic	Intergenic	111843	NM_152325	122046	Hs.124463	NM_152325	HPRD:17551	TEX26	C13orf26	testis expressed 26	protein-coding
19-PTNLD28-TUMOR_peak_72841	chr3	185060318	185060414	+	7.82259	NA	intron (NM_001242317, intron 2 of 12)	intron (NM_001242317, intron 2 of 12)	-20470	NM_004721	9175	Hs.591306	NM_004721	HPRD:05372	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_12949	chr10	35841697	35841829	+	7.82259	NA	intron (NM_181698, intron 9 of 11)	intron (NM_181698, intron 9 of 11)	-52575	NM_153368	219770	Hs.638922	NM_153368	HPRD:13103	GJD4	CX40.1	gap junction protein, delta 4, 40.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_97368	chr8	18142339	18142428	+	7.82259	NA	Intergenic	Intergenic	63206	NM_001160174	9	Hs.591847	NM_000662	HPRD:00149	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_94343	chr7	100369794	100369917	+	7.82259	NA	intron (NR_111918, intron 29 of 46)	AluSq|SINE|Alu	38606	NR_111917	7455	Hs.307004	NM_003386	HPRD:03846	ZAN	-	zonadhesin	protein-coding
19-PTNLD28-TUMOR_peak_46733	chr19	3500616	3500988	+	7.82259	NA	promoter-TSS (NM_031304)	promoter-TSS (NM_031304)	136	NM_001145165	83475	Hs.515064	NM_031304	HPRD:14627	DOHH	HLRC1|hDOHH	deoxyhypusine hydroxylase/monooxygenase	protein-coding
19-PTNLD28-TUMOR_peak_86962	chr6	34713655	34713771	+	7.82259	NA	Intergenic	Intergenic	-11158	NR_029472	6631	Hs.1063	NM_003093		SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
19-PTNLD28-TUMOR_peak_67149	chr3	23642945	23643134	+	7.82259	NA	intron (NR_039621, intron 2 of 2)	intron (NR_039621, intron 2 of 2)	-204345	NM_182666	7324	Hs.164853	NM_003341	HPRD:04225	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
19-PTNLD28-TUMOR_peak_84247	chr5	176000984	176001264	+	7.82259	NA	exon (NM_017675, exon 7 of 32)	exon (NM_017675, exon 7 of 32)	24781	NM_017675	54825	Hs.4205	NM_017675	HPRD:15103	CDHR2	PCDH24|PCLKC	cadherin-related family member 2	protein-coding
19-PTNLD28-TUMOR_peak_69785	chr3	111856071	111856346	+	7.82157	NA	Intergenic	Intergenic	-4056	NM_001190259	257144	Hs.49614	NM_152785	HPRD:09695	GCSAM	GCAT2|GCET2|HGAL	germinal center-associated, signaling and motility	protein-coding
19-PTNLD28-TUMOR_peak_6498	chr1	147721189	147721323	+	7.82157	NA	intron (NR_102404, intron 17 of 18).2	AluJb|SINE|Alu	-1914	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
19-PTNLD28-TUMOR_peak_74822	chr4	25815475	25815587	+	7.82157	NA	intron (NM_001297594, intron 9 of 23)	intron (NM_001297594, intron 9 of 23)	49122	NM_015187	23231	Hs.479384	NM_015187	HPRD:11105	SEL1L3	Sel-1L3	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_444	chr1	7529880	7530097	+	7.82097	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-301341	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_98047	chr8	30580339	30580646	+	7.81752	NA	intron (NM_001195103, intron 1 of 11)	intron (NM_001195103, intron 1 of 11)	4994	NM_001195104	2936	Hs.271510	NM_000637	HPRD:00704	GSR	HEL-75	glutathione reductase	protein-coding
19-PTNLD28-TUMOR_peak_46338	chr18	74783812	74784169	+	7.81752	NA	intron (NM_001025101, intron 2 of 8)	intron (NM_001025101, intron 2 of 8)	-54935	NM_001025092	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_69828	chr3	112497574	112497743	+	7.81752	NA	Intergenic	Intergenic	-29492	NR_110017	101929694	Hs.385630	NR_110017	ENSG00000240893	LOC101929694	-	uncharacterized LOC101929694	ncRNA
19-PTNLD28-TUMOR_peak_50195	chr19	53700124	53700434	+	7.81752	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-3660	NM_024733	79788	Hs.745230	NM_024733	HPRD:07856	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
19-PTNLD28-TUMOR_peak_73908	chr4	2470311	2470479	+	7.81742	NA	promoter-TSS (NM_002938)	promoter-TSS (NM_002938)	-400	NM_001185010	6047	Hs.66394	NM_002938	HPRD:04167	RNF4	SLX5|SNURF	ring finger protein 4	protein-coding
19-PTNLD28-TUMOR_peak_43964	chr17	79396715	79396929	+	7.81742	NA	intron (NM_001291324, intron 1 of 27)	intron (NM_001291324, intron 1 of 27)	21392	NR_036152	100422944		NR_036152	miRBase:MI0014229	MIR3186	-	microRNA 3186	ncRNA
19-PTNLD28-TUMOR_peak_29402	chr14	21944494	21944612	+	7.81489	NA	promoter-TSS (NM_014828)	promoter-TSS (NM_014828)	279	NM_001163380	84932	Hs.22399	NM_032846	HPRD:06312	RAB2B	-	RAB2B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_10378	chr1	224521794	224521921	+	7.81489	NA	Intergenic	MER89|LTR|ERV1	-3966	NM_206840	4931	Hs.497867	NM_002533	HPRD:03887	NVL	-	nuclear VCP-like	protein-coding
19-PTNLD28-TUMOR_peak_19455	chr11	66888463	66888620	+	7.81489	NA	intron (NR_027473, intron 1 of 20)	intron (NR_027473, intron 1 of 20)	1801	NR_027473	22992	Hs.124147	NM_012308	HPRD:05741	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine (K)-specific demethylase 2A	protein-coding
19-PTNLD28-TUMOR_peak_82263	chr5	133984776	133984962	+	7.81489	NA	intron (NM_021982, intron 1 of 22)	CpG	394	NM_021982	10802	Hs.595540	NM_021982	ENSG00000113615	SEC24A	-	SEC24 family member A	protein-coding
19-PTNLD28-TUMOR_peak_6864	chr1	152162383	152162540	+	7.80733	NA	Intergenic	Intergenic	-30757	NM_001122965	126638	Hs.376144	NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
19-PTNLD28-TUMOR_peak_29581	chr14	24728383	24728669	+	7.80733	NA	intron (NM_000359, intron 6 of 14)	intron (NM_000359, intron 6 of 14)	3890	NM_000359	7051	Hs.508950	NM_000359	HPRD:01824	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
19-PTNLD28-TUMOR_peak_3470	chr1	51795187	51795350	+	7.80405	NA	promoter-TSS (NR_123731)	promoter-TSS (NR_123731)	-58	NR_123731	102724097	Hs.568648	NR_123731		TTC39A-AS1	-	TTC39A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75971	chr4	82557004	82557110	+	7.80405	NA	Intergenic	Intergenic	-163975	NM_001300736	153020	Hs.591696	NM_152545	HPRD:17955	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_101661	chr8	144821468	144821562	+	7.80405	NA	intron (NR_033849, intron 2 of 3)	intron (NR_033849, intron 2 of 3)	5205	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	-	FAM83H antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_19671	chr11	69360882	69361079	+	7.80405	NA	Intergenic	MER5A1|DNA|hAT-Charlie	60651	NR_120545	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_14061	chr10	71446136	71446242	+	7.80405	NA	Intergenic	Intergenic	56186	NM_145306	219738	Hs.522992	NM_145306	HPRD:12573	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
19-PTNLD28-TUMOR_peak_86856	chr6	33557564	33557693	+	7.80248	NA	TTS (NR_028361)	TTS (NR_028361)	3487	NR_027908	401253	Hs.520075	NM_207497	HPRD:16966	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
19-PTNLD28-TUMOR_peak_31227	chr14	74035866	74036021	+	7.80229	NA	5' UTR (NM_006821, exon 1 of 3)	5' UTR (NM_006821, exon 1 of 3)	180	NM_006821	10965	Hs.446685	NM_006821	HPRD:10173	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_82720	chr5	140851025	140851152	+	7.80229	NA	intron (NM_003735, intron 1 of 3)	L2|LINE|L2	-4481	NM_002588	5098	Hs.368160	NM_002588	HPRD:04693	PCDHGC3	PC43|PCDH-GAMMA-C3|PCDH2	protocadherin gamma subfamily C, 3	protein-coding
19-PTNLD28-TUMOR_peak_62983	chr21	27541515	27541622	+	7.80229	NA	intron (NM_001136131, intron 1 of 15)	intron (NM_001136131, intron 1 of 15)	1570	NM_000484	351	Hs.434980	NM_000484	HPRD:00100	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
19-PTNLD28-TUMOR_peak_17268	chr11	12831591	12831723	+	7.80229	NA	intron (NM_021961, intron 3 of 12)	AluSg|SINE|Alu	135688	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_52763	chr2	53090108	53090212	+	7.80229	NA	Intergenic	Intergenic	-904769	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_30726	chr14	64194545	64195170	+	7.79998	NA	promoter-TSS (NM_030791)	promoter-TSS (NM_030791)	-101	NM_030791	81537	Hs.24678	NM_030791	HPRD:10226	SGPP1	SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_78376	chr4	186631396	186631509	+	7.79998	NA	intron (NM_001145672, intron 1 of 20)	intron (NM_001145672, intron 1 of 20)	-53329	NM_001145674	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_53959	chr2	87902234	87902523	+	7.79998	NA	Intergenic	Intergenic	-26896	NR_039634	100616499		NR_039634	miRBase:MI0016775	MIR4435-1	-	microRNA 4435-1	ncRNA
19-PTNLD28-TUMOR_peak_58728	chr2	228727503	228727668	+	7.79998	NA	Intergenic	Intergenic	-8742	NM_178821	164781	Hs.424594	NM_178821	HPRD:08079	DAW1	ODA16|WDR69	dynein assembly factor with WDR repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_39168	chr16	85362926	85363062	+	7.79998	NA	Intergenic	Intergenic	-23063	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_58628	chr2	224809856	224810213	+	7.79998	NA	promoter-TSS (NM_020830)	promoter-TSS (NM_020830)	18	NM_020830	57590	Hs.368359	NM_020830	HPRD:15663	WDFY1	FENS-1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_12713	chr10	30348286	30348527	+	7.79998	NA	promoter-TSS (NM_020848)	promoter-TSS (NM_020848)	82	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_42299	chr17	49008856	49009262	+	7.79936	NA	Intergenic	CpG	-63720	NM_001243877	10140	Hs.703321	NM_005749	HPRD:09273	TOB1	APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
19-PTNLD28-TUMOR_peak_2660	chr1	39980509	39980672	+	7.79936	NA	intron (NM_181809, intron 3 of 6)	CpG	23272	NM_181809	353500	Hs.472497	NM_181809		BMP8A	-	bone morphogenetic protein 8a	protein-coding
19-PTNLD28-TUMOR_peak_5979	chr1	120255946	120256119	+	7.79805	NA	intron (NM_006623, intron 1 of 11)	intron (NM_006623, intron 1 of 11)	1613	NM_006623	26227	Hs.487296	NM_006623	HPRD:06047	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_26362	chr12	112550331	112550611	+	7.79417	NA	Intergenic	Intergenic	-3836	NM_024953	80018	Hs.530941	NM_024953	HPRD:08578	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_65148	chr22	31739916	31740072	+	7.79356	NA	intron (NM_032051, intron 1 of 2)	intron (NM_032051, intron 1 of 2)	2255	NM_032050	23598	Hs.731398	NM_014323	HPRD:05522	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_18705	chr11	58347408	58347505	+	7.79197	NA	intron (NR_024091, intron 1 of 12)	intron (NR_024091, intron 1 of 12)	869	NM_053023	80829	Hs.524920	NM_053023	HPRD:11700	ZFP91	DMS-8|DSM-8|PZF|ZFP-91|ZNF757	ZFP91 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_32282	chr14	105147322	105147463	+	7.79197	NA	Intergenic	Intergenic	-3306	NR_039860	100616300		NR_039860	miRBase:MI0017344	MIR4710	-	microRNA 4710	ncRNA
19-PTNLD28-TUMOR_peak_3180	chr1	46196225	46196364	+	7.79185	NA	intron (NM_001145349, intron 3 of 9)	MER91A|DNA|hAT-Tip100	20191	NM_001145349	3652	Hs.744252	NM_005897	HPRD:00940	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_9983	chr1	212650592	212650789	+	7.79185	NA	Intergenic	Intergenic	44461	NM_013349	29937	Hs.461787	NM_013349	HPRD:11603	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_106841	chr9	140188787	140188911	+	7.79185	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	7854	NM_001004354	441478	Hs.535075	NM_001004354	HPRD:17564	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_30463	chr14	56216251	56216598	+	7.79185	NA	Intergenic	Intergenic	-16539	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_99784	chr8	102193382	102193506	+	7.79185	NA	Intergenic	Intergenic	24516	NM_001267708	51123	Hs.374485	NM_016096	HPRD:13688	ZNF706	PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
19-PTNLD28-TUMOR_peak_86981	chr6	35012323	35012503	+	7.79185	NA	intron (NM_015245, intron 11 of 23)	intron (NM_015245, intron 11 of 23)	96774	NM_001261818	6954	Hs.435371	NM_018679	HPRD:01749	TCP11	D6S230E|FPPR	t-complex 11, testis-specific	protein-coding
19-PTNLD28-TUMOR_peak_14560	chr10	81074526	81075117	+	7.79185	NA	3' UTR (NM_020338, exon 25 of 25)	3' UTR (NM_020338, exon 25 of 25)	-32399	NM_005729	10105	Hs.381072	NM_005729	HPRD:06839	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19-PTNLD28-TUMOR_peak_75660	chr4	74573774	74573864	+	7.79185	NA	Intergenic	Intergenic	-32404	NM_000584	3576	Hs.624	NM_000584	HPRD:00909	CXCL8	GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1	chemokine (C-X-C motif) ligand 8	protein-coding
19-PTNLD28-TUMOR_peak_27323	chr13	19183249	19183433	+	7.79185	NA	Intergenic	CpG	130898	NR_047508	100874164	Hs.739604	NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
19-PTNLD28-TUMOR_peak_46787	chr19	4369280	4369519	+	7.79185	NA	intron (NM_001199944, intron 1 of 9)	intron (NM_001199944, intron 1 of 9)	25875	NM_032868	84954	Hs.321689	NM_032868	HPRD:07873	MPND	-	MPN domain containing	protein-coding
19-PTNLD28-TUMOR_peak_36721	chr16	21170886	21171182	+	7.79185	NA	promoter-TSS (NM_017539)	promoter-TSS (NM_017539)	-272	NM_017539	55567	Hs.526500	NM_017539	HPRD:04513	DNAH3	DLP3|DNAHC3B|HEL-36|Hsadhc3	dynein, axonemal, heavy chain 3	protein-coding
19-PTNLD28-TUMOR_peak_106649	chr9	137326776	137326878	+	7.79185	NA	intron (NM_001291921, intron 8 of 8)	intron (NM_001291921, intron 8 of 8)	28399	NM_001291921	6256	Hs.590886	NM_002957		RXRA	NR2B1	retinoid X receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_85135	chr6	7108581	7108669	+	7.79185	NA	intron (NM_001003698, intron 1 of 11)	CpG	539	NM_001003699	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_44258	chr18	2111580	2111689	+	7.78881	NA	Intergenic	Intergenic	459855	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_91775	chr7	28844667	28844892	+	7.78881	NA	intron (NM_001011666, intron 4 of 6)	intron (NM_001011666, intron 4 of 6)	119058	NM_001011666	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_1726	chr1	27293523	27293636	+	7.78881	NA	Intergenic	MIRb|SINE|MIR	-6678	NM_152365	126695	Hs.188881	NM_152365	HPRD:08754	KDF1	C1orf172	keratinocyte differentiation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_64270	chr22	18551219	18551389	+	7.78881	NA	Intergenic	Intergenic	-9382	NM_017929	55670	Hs.517400	NM_017929		PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
19-PTNLD28-TUMOR_peak_984	chr1	15573610	15573979	+	7.78881	NA	promoter-TSS (NM_052929)	promoter-TSS (NM_052929)	26	NM_052929	114827	Hs.659997	NM_052929	ENSG00000142621	FHAD1	-	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_108666	chrX	70338329	70338784	+	7.78881	NA	5' UTR (NM_005120, exon 1 of 45)	5' UTR (NM_005120, exon 1 of 45)	150	NM_005120	9968	Hs.409226	NM_005120	HPRD:02176	MED12	ARC240|CAGH45|FGS1|HOPA|MED12S|OHDOX|OKS|OPA1|TNRC11|TRAP230	mediator complex subunit 12	protein-coding
19-PTNLD28-TUMOR_peak_81594	chr5	112445969	112446176	+	7.78881	NA	intron (NM_002387, intron 4 of 16)	L4|LINE|RTE	133665	NM_001242377	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_31915	chr14	96890688	96890965	+	7.78881	NA	intron (NM_152327, intron 5 of 17)	intron (NM_152327, intron 5 of 17)	32378	NM_152327	122481	Hs.667462	NM_152327	HPRD:10640	AK7	AK 7	adenylate kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_90469	chr6	166470291	166470382	+	7.78881	NA	Intergenic	Intergenic	-68809	NR_026860	90632	Hs.31917	NR_026860	ENSG00000223414	LINC00473	C6orf176|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA
19-PTNLD28-TUMOR_peak_45033	chr18	25329327	25329415	+	7.78881	NA	Intergenic	Intergenic	428074	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_107637	chrX	15636001	15636118	+	7.78881	NA	Intergenic	Intergenic	-15867	NM_021804	59272	Hs.178098	NM_021804	HPRD:02274	ACE2	ACEH	angiotensin I converting enzyme 2	protein-coding
19-PTNLD28-TUMOR_peak_14173	chr10	72897915	72898176	+	7.78881	NA	Intergenic	Intergenic	-74247	NM_001244889	219699	Hs.522997	NM_170744	HPRD:08487	UNC5B	UNC5H2|p53RDL1	unc-5 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_12417	chr10	23983544	23983713	+	7.78881	NA	promoter-TSS (NM_001098500)	promoter-TSS (NM_001098500)	-47	NM_001098500	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_28958	chr13	106809009	106809098	+	7.78881	NA	Intergenic	Intergenic	-219858	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
19-PTNLD28-TUMOR_peak_38891	chr16	79647037	79647168	+	7.78881	NA	Intergenic	Intergenic	-12480	NM_001031804	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_7431	chr1	157847986	157848162	+	7.78881	NA	Intergenic	Intergenic	-36440	NM_005894	922	Hs.134035	NM_005894	HPRD:03997	CD5L	AIM|API6|PRO229|SP-ALPHA|Spalpha	CD5 molecule-like	protein-coding
19-PTNLD28-TUMOR_peak_8077	chr1	168929947	168930046	+	7.78881	NA	intron (NR_104091, intron 3 of 4)	intron (NR_104091, intron 3 of 4)	126247	NR_104091	101978719	Hs.517849	NR_104091		LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
19-PTNLD28-TUMOR_peak_86390	chr6	29664461	29664555	+	7.78881	NA	Intergenic	L1M7|LINE|L1	-19577	NM_001109809	346171	Hs.156326	NM_001109809	ENSG00000204644	ZFP57	C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2	ZFP57 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_74648	chr4	16585510	16585640	+	7.78881	NA	intron (NM_001130834, intron 5 of 8)	intron (NM_001130834, intron 5 of 8)	38079	NR_049865	100847063		NR_049865		MIR548AX	-	microRNA 548ax	ncRNA
19-PTNLD28-TUMOR_peak_99319	chr8	81523918	81524228	+	7.78881	NA	Intergenic	Intergenic	125625	NM_001105539	65986	Hs.591868	NM_023929	HPRD:15689	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_88827	chr6	95561366	95561463	+	7.78881	NA	Intergenic	L1PA3|LINE|L1	463913	NR_104136	101927288	Hs.616643	NR_047502		MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_21488	chr11	118187446	118187534	+	7.78881	NA	TTS (NM_000733)	TTS (NM_000733)	12195	NM_000733	916	Hs.3003	NM_000733	HPRD:08923	CD3E	IMD18|T3E|TCRE	CD3e molecule, epsilon (CD3-TCR complex)	protein-coding
19-PTNLD28-TUMOR_peak_33774	chr15	59483766	59483900	+	7.78881	NA	intron (NM_004998, intron 17 of 27)	intron (NM_004998, intron 17 of 27)	-15182	NM_033195	92483	Hs.307052	NM_033195	HPRD:13981	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A-like 6B	protein-coding
19-PTNLD28-TUMOR_peak_65598	chr22	39994368	39994481	+	7.78881	NA	intron (NM_001003406, intron 2 of 35)	(CCCCG)n|Simple_repeat|Simple_repeat	27666	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_47360	chr19	11832609	11832778	+	7.78881	NA	exon (NM_001080493, exon 4 of 4)	exon (NM_001080493, exon 4 of 4)	17131	NM_017507	55552	Hs.142167	NM_017507	ENSG00000197933	ZNF823	HSZFP36	zinc finger protein 823	protein-coding
19-PTNLD28-TUMOR_peak_107771	chrX	21746078	21746200	+	7.78881	NA	intron (NM_014332, intron 4 of 4)	intron (NM_014332, intron 4 of 4)	30139	NM_014332	23676	Hs.86492	NM_014332	HPRD:02204	SMPX	DFN6|DFNX4	small muscle protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_34514	chr15	75109781	75110013	+	7.78881	NA	intron (NM_021819, intron 4 of 13)	intron (NM_021819, intron 4 of 13)	4703	NM_021819	79748	Hs.620644	NM_021819	HPRD:17284	LMAN1L	ERGIC-53L|ERGL	lectin, mannose-binding, 1 like	protein-coding
19-PTNLD28-TUMOR_peak_77346	chr4	142566857	142566962	+	7.78881	NA	intron (NR_037840, intron 1 of 7)	MLT1G|LTR|ERVL-MaLR	9160	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_81340	chr5	99426148	99426435	+	7.78881	NA	Intergenic	THE1B|LTR|ERVL-MaLR	297667	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_17074	chr11	10324372	10324707	+	7.78870	NA	Intergenic	CpG	-2103	NM_001124	133	Hs.441047	NM_001124		ADM	AM	adrenomedullin	protein-coding
19-PTNLD28-TUMOR_peak_9608	chr1	205282745	205282857	+	7.78870	NA	intron (NM_030952, intron 1 of 6)	MIR3|SINE|MIR	8082	NM_030952	81788	Hs.497512	NM_030952	HPRD:12172	NUAK2	SNARK	NUAK family, SNF1-like kinase, 2	protein-coding
19-PTNLD28-TUMOR_peak_9308	chr1	202104444	202104606	+	7.78740	NA	intron (NM_001256129, intron 4 of 5)	intron (NM_001256129, intron 4 of 5)	9346	NM_138795	127829	Hs.497399	NM_138795	HPRD:09807	ARL8A	ARL10B|GIE2	ADP-ribosylation factor-like 8A	protein-coding
19-PTNLD28-TUMOR_peak_7551	chr1	159895633	159895786	+	7.78584	NA	promoter-TSS (NM_003564)	promoter-TSS (NM_003564)	-377	NM_003564	8407	Hs.517168	NM_003564	HPRD:06864	TAGLN2	HA1756	transgelin 2	protein-coding
19-PTNLD28-TUMOR_peak_50400	chr19	56069529	56069718	+	7.78300	NA	Intergenic	AluSx|SINE|Alu	-12714	NM_001199824	100130827	Hs.712129	NM_001199824	ENSG00000231274	SBK3	SGK110	SH3 domain binding kinase family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_41229	chr17	36600501	36600653	+	7.78300	NA	intron (NM_001199417, intron 1 of 23)	intron (NM_001199417, intron 1 of 23)	15857	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000225485	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
19-PTNLD28-TUMOR_peak_4543	chr1	83648303	83648441	+	7.78300	NA	Intergenic	L1PA2|LINE|L1	-196481	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_2677	chr1	40167571	40167779	+	7.78300	NA	Intergenic	Intergenic	-10293	NM_016257	51440	Hs.743975	NM_016257	HPRD:17113	HPCAL4	HLP4	hippocalcin like 4	protein-coding
19-PTNLD28-TUMOR_peak_8685	chr1	182367051	182367406	+	7.78300	NA	TTS (NM_172000)	TTS (NM_172000)	2523	NM_172000	127670	Hs.156977	NM_172000	HPRD:13642	TEDDM1	EDDM9|Epdd1|HE9|TMEM45C	transmembrane epididymal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_83621	chr5	159769546	159769750	+	7.78300	NA	Intergenic	Intergenic	28000	NM_031908	114898	Hs.110062	NM_031908	HPRD:12715	C1QTNF2	CTRP2|zacrp2	C1q and tumor necrosis factor related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_24882	chr12	60542756	60542934	+	7.78300	NA	Intergenic	Intergenic	459727	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_62455	chr20	60553167	60553280	+	7.78300	NA	intron (NM_003185, intron 14 of 14)	CpG	-24505	NR_031658	100302168		NR_031658	miRBase:MI0006391	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_24775	chr12	57872283	57872448	+	7.78300	NA	promoter-TSS (NM_001080156)	promoter-TSS (NM_001080156)	-637	NM_001080156	64333	Hs.437126	NM_032496	HPRD:06449	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
19-PTNLD28-TUMOR_peak_102428	chr9	21030746	21030915	+	7.78300	NA	intron (NM_001010915, intron 1 of 6)	intron (NM_001010915, intron 1 of 6)	805	NM_001010915	401494	Hs.716678	NM_001010915		PTPLAD2	HACD4	protein tyrosine phosphatase-like A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_93377	chr7	74775571	74775695	+	7.78300	NA	intron (NR_027776, intron 5 of 5)	intron (NR_027776, intron 5 of 5)	91876	NM_001145064	729438	Hs.647031	NM_001145064		GATSL2	GATSL1	GATS protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_19040	chr11	62630214	62630336	+	7.78300	NA	intron (NM_001012664, intron 1 of 9)	intron (NM_001012664, intron 1 of 9)	6791	NM_002394	6520	Hs.502769	NM_002394	HPRD:01148	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 (amino acid transporter heavy chain), member 2	protein-coding
19-PTNLD28-TUMOR_peak_105926	chr9	124768039	124768179	+	7.78300	NA	intron (NM_001139442, intron 3 of 8)	MER20B|DNA|hAT-Charlie	87776	NM_001139442	158135	Hs.438937	NM_194252	HPRD:10047	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase-like family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_52053	chr2	33298206	33298315	+	7.78300	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-61404	NM_001166264	4052	Hs.619315	NM_000627	HPRD:01039	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_66615	chr3	11550718	11550829	+	7.78300	NA	intron (NM_001136031, intron 17 of 17)	intron (NM_001136031, intron 17 of 17)	59625	NM_001128221	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_62906	chr21	19294001	19294135	+	7.78300	NA	intron (NM_001204175, intron 1 of 5)	L2c|LINE|L2	4411	NM_001204178	140578	Hs.283725	NM_024944	HPRD:06261	CHODL	C21orf68|MT75	chondrolectin	protein-coding
19-PTNLD28-TUMOR_peak_59569	chr20	3758398	3758559	+	7.78300	NA	3' UTR (NM_015417, exon 7 of 7)	3' UTR (NM_015417, exon 7 of 7)	3624	NM_015417	25876	Hs.72620	NM_015417	HPRD:09839	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
19-PTNLD28-TUMOR_peak_65948	chr22	46302090	46302330	+	7.78300	NA	Intergenic	MIR3|SINE|MIR	70798	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_1923	chr1	29742001	29742163	+	7.77875	NA	Intergenic	Intergenic	-65456	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LOC101928460	-	uncharacterized LOC101928460	ncRNA
19-PTNLD28-TUMOR_peak_92974	chr7	66836832	66837022	+	7.77875	NA	Intergenic	Intergenic	35964	NR_108104	101929736	Hs.634050	NR_108104		LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
19-PTNLD28-TUMOR_peak_92359	chr7	45892697	45892844	+	7.77875	NA	Intergenic	Intergenic	-35189	NM_000596	3484	Hs.642938	NM_000596	HPRD:00897	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin-like growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59043	chr2	237574185	237574445	+	7.77875	NA	Intergenic	AluSx3|SINE|Alu	95935	NM_020311	57007	Hs.471751	NM_020311	HPRD:09882	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_90520	chr6	167529662	167529798	+	7.77875	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	4435	NM_004367	1235	Hs.46468	NM_004367	HPRD:03498	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	chemokine (C-C motif) receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_96980	chr8	7556021	7556141	+	7.77875	NA	Intergenic	Intergenic	-71025	NR_046351	441328	Hs.694406	NM_001164447		FAM90A10P	FAM90A10	putative protein FAM90A10	pseudo
19-PTNLD28-TUMOR_peak_63353	chr21	36519785	36519978	+	7.77875	NA	Intergenic	Intergenic	-98286	NM_001754	861	Hs.149261	NM_001754	HPRD:01043	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_15885	chr10	119564350	119564511	+	7.77875	NA	Intergenic	Intergenic	241684	NM_014904	22841	Hs.173656	NM_014904	HPRD:10548	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2 (class I)	protein-coding
19-PTNLD28-TUMOR_peak_34004	chr15	65321516	65321828	+	7.77875	NA	intron (NM_139242, intron 1 of 8)	CpG	305	NM_139242	123263	Hs.531615	NM_139242		MTFMT	COXPD15|FMT1	mitochondrial methionyl-tRNA formyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_98278	chr8	38578954	38579093	+	7.77875	NA	Intergenic	Intergenic	-6681	NM_001146216	6867	Hs.279245	NM_006283	HPRD:10391	TACC1	Ga55	transforming, acidic coiled-coil containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_107808	chrX	23685645	23686088	+	7.77875	NA	exon (NM_006406, exon 1 of 7)	exon (NM_006406, exon 1 of 7)	221	NM_006406	10549	Hs.83383	NM_006406	HPRD:05935	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
19-PTNLD28-TUMOR_peak_109011	chrX	102631178	102631556	+	7.77875	NA	promoter-TSS (NM_014380)	promoter-TSS (NM_014380)	116	NM_206915	27018	Hs.448588	NM_014380	HPRD:02291	NGFRAP1	BEX3|Bex|DXS6984E|HGR74|NADE	nerve growth factor receptor (TNFRSF16) associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21539	chr11	118862951	118863203	+	7.77875	NA	Intergenic	SVA_B|Other|Other	-5766	NM_198489	338657	Hs.534613	NM_198489	HPRD:13234	CCDC84	-	coiled-coil domain containing 84	protein-coding
19-PTNLD28-TUMOR_peak_46954	chr19	7257256	7257524	+	7.77875	NA	intron (NM_001079817, intron 2 of 20)	Charlie22a|DNA|hAT-Charlie	36621	NM_001079817	3643	Hs.465744	NM_000208	HPRD:00975	INSR	CD220|HHF5	insulin receptor	protein-coding
19-PTNLD28-TUMOR_peak_5490	chr1	111003014	111003126	+	7.77875	NA	Intergenic	Intergenic	9282	NM_032414	84432	Hs.514793	NM_032414	HPRD:06946	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
19-PTNLD28-TUMOR_peak_38754	chr16	75307553	75307670	+	7.77875	NA	Intergenic	L2b|LINE|L2	-5660	NM_001170715	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_100237	chr8	118341313	118341417	+	7.77875	NA	Intergenic	Intergenic	-191587	NM_001282986	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_30048	chr14	43427850	43428014	+	7.77875	NA	Intergenic	L1PA2|LINE|L1	1351168	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_13481	chr10	49072579	49072919	+	7.77875	NA	Intergenic	Intergenic	-120120	NR_003611	399761	Hs.571994	NM_001040053	ENSG00000204164	BMS1P5	BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3	BMS1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_2356	chr1	36004163	36004268	+	7.77875	NA	intron (NM_024874, intron 2 of 20)	AluSx|SINE|Alu	18822	NM_024874	79932	Hs.456507	NM_024874	HPRD:11164	KIAA0319L	-	KIAA0319-like	protein-coding
19-PTNLD28-TUMOR_peak_81928	chr5	126015370	126015491	+	7.77875	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	48016	NM_207408	389320	Hs.177983	NM_207408	HPRD:13399	TEX43	C5orf48|Tseg7	testis expressed 43	protein-coding
19-PTNLD28-TUMOR_peak_78390	chr4	186796145	186796256	+	7.77875	NA	intron (NM_021069, intron 1 of 20)	intron (NM_021069, intron 1 of 20)	-62790	NM_003603	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_35413	chr15	98971508	98971853	+	7.77875	NA	Intergenic	CpG	85931	NM_182562	283777	Hs.668070	NM_182562	HPRD:08265	FAM169B	-	family with sequence similarity 169, member B	protein-coding
19-PTNLD28-TUMOR_peak_58897	chr2	233789901	233790091	+	7.77875	NA	intron (NM_019850, intron 4 of 14)	intron (NM_019850, intron 4 of 14)	2865	NM_001114090	25791	Hs.97316	NM_019850	HPRD:10442	NGEF	ARHGEF27|EPHEXIN	neuronal guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_106159	chr9	130099182	130099332	+	7.77875	NA	intron (NR_104591, intron 11 of 26)	intron (NR_104591, intron 11 of 26)	-60160	NM_001271712	29988	Hs.179522	NM_014580	HPRD:05580	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 (facilitated glucose transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_5449	chr1	110590229	110590329	+	7.77875	NA	intron (NR_073071, intron 15 of 21)	intron (NR_073071, intron 15 of 21)	13056	NR_073071	85369	Hs.584996	NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_107994	chrX	40275028	40275230	+	7.77875	NA	Intergenic	Intergenic	152959	NR_110386	101927476	Hs.522607	NR_110386	ENSG00000236393	LOC101927476	-	uncharacterized LOC101927476	ncRNA
19-PTNLD28-TUMOR_peak_32572	chr15	23158201	23158296	+	7.77875	NA	Intergenic	CpG	-42994	NR_040057	283683	Hs.534616	NR_040057		LOC283683	-	uncharacterized LOC283683	ncRNA
19-PTNLD28-TUMOR_peak_18448	chr11	47226254	47226479	+	7.77875	NA	Intergenic	Intergenic	-10127	NM_000107	1643	Hs.700338	NM_000107	HPRD:02886	DDB2	DDBB|UV-DDB2	damage-specific DNA binding protein 2, 48kDa	protein-coding
19-PTNLD28-TUMOR_peak_6508	chr1	147792305	147792520	+	7.77875	NA	intron (NR_102404, intron 17 of 18).2	L1ME3|LINE|L1	14266	NR_049810	100847044		NR_049810		MIR5087	-	microRNA 5087	ncRNA
19-PTNLD28-TUMOR_peak_75364	chr4	55779949	55780173	+	7.77875	NA	Intergenic	Intergenic	211701	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_49294	chr19	44599499	44599606	+	7.77875	NA	intron (NM_013398, intron 1 of 5)	MIR|SINE|MIR	1070	NM_013398	7767	Hs.585869	NM_013398	HPRD:06094	ZNF224	BMZF-2|BMZF2|KOX22|ZNF255|ZNF27	zinc finger protein 224	protein-coding
19-PTNLD28-TUMOR_peak_17629	chr11	20385234	20385369	+	7.77774	NA	promoter-TSS (NM_006410)	promoter-TSS (NM_006410)	12	NM_001098520	10553	Hs.90753	NM_006410	HPRD:09288	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_43092	chr17	65991328	65991449	+	7.77774	NA	Intergenic	Intergenic	-1623	NM_181656	284018	Hs.90790	NM_181655	HPRD:14151	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_2179	chr1	33283829	33284015	+	7.77774	NA	promoter-TSS (NM_003680)	promoter-TSS (NM_003680)	-289	NM_003680	8565	Hs.213264	NM_003680	HPRD:09153	YARS	CMTDIC|TYRRS|YRS|YTS	tyrosyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_11039	chr1	234945207	234945531	+	7.77774	NA	Intergenic	Intergenic	85580	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_18313	chr11	45201755	45201941	+	7.77774	NA	intron (NM_001256695, intron 1 of 7)	CpG	32954	NM_001256695	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_64108	chr21	47553877	47554123	+	7.77699	NA	Intergenic	Intergenic	21481	NM_006657	10841	Hs.415846	NM_006657	HPRD:08430	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
19-PTNLD28-TUMOR_peak_21314	chr11	114754335	114754479	+	7.77699	NA	Intergenic	Intergenic	205207	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_87084	chr6	36332798	36332929	+	7.77699	NA	intron (NM_001207039, intron 6 of 6)	intron (NM_001207039, intron 6 of 6)	22705	NM_001207038	51513	Hs.272398	NM_016135	HPRD:16095	ETV7	TEL-2|TEL2|TELB	ets variant 7	protein-coding
19-PTNLD28-TUMOR_peak_106226	chr9	130768876	130769214	+	7.77699	NA	Intergenic	AluJb|SINE|Alu	-26233	NM_001035254	399665	Hs.535972	NM_203305	HPRD:13262	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102, member A	protein-coding
19-PTNLD28-TUMOR_peak_45906	chr18	55500927	55501207	+	7.77699	NA	Intergenic	Intergenic	-30740	NM_005603	5205	Hs.216623	NM_005603	HPRD:03867	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase, aminophospholipid transporter, class I, type 8B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_34440	chr15	74219995	74220442	+	7.77699	NA	promoter-TSS (NR_040070)	promoter-TSS (NR_040070)	83	NR_040070	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41484	chr17	39968895	39969039	+	7.77699	NA	promoter-TSS (NM_021939)	promoter-TSS (NM_021939)	5	NM_021939	60681	Hs.463035	NM_021939	HPRD:09522	FKBP10	FKBP65|OI11|OI6|PPIASE|hFKBP65	FK506 binding protein 10, 65 kDa	protein-coding
19-PTNLD28-TUMOR_peak_63583	chr21	40757810	40758002	+	7.77699	NA	intron (NM_004627, intron 1 of 4)	intron (NM_004627, intron 1 of 4)	-1786	NM_001146218	7485	Hs.198308	NM_004627	HPRD:04224	WRB	CHD5	tryptophan rich basic protein	protein-coding
19-PTNLD28-TUMOR_peak_78459	chr4	188917736	188918138	+	7.77699	NA	intron (NM_174900, intron 1 of 3)	intron (NM_174900, intron 1 of 3)	1012	NM_174900	132625	Hs.335787	NM_174900	HPRD:15726	ZFP42	REX1|ZNF754	ZFP42 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_77210	chr4	140587126	140587221	+	7.77699	NA	5' UTR (NM_001204368, exon 1 of 4)	5' UTR (NM_001204368, exon 1 of 4)	251	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_5874	chr1	117774661	117774934	+	7.77699	NA	Intergenic	Intergenic	-21215	NR_045604	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_49422	chr19	46145813	46145911	+	7.77699	NA	3' UTR (NM_001242348, exon 3 of 3)	3' UTR (NM_001242348, exon 3 of 3)	957	NM_001242348	100287177	Hs.668611	NM_001242348	ENSG00000267757	C19orf83	-	chromosome 19 open reading frame 83	protein-coding
19-PTNLD28-TUMOR_peak_2075	chr1	32228369	32228459	+	7.77699	NA	intron (NM_001294335, intron 1 of 32)	CpG	1250	NM_001294336	576	Hs.524138	NM_001703	HPRD:04063	BAI2	-	brain-specific angiogenesis inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_11565	chr1	249153184	249153330	+	7.77638	NA	promoter-TSS (NM_017865)	promoter-TSS (NM_017865)	58	NM_017865	55657	Hs.377705	NM_017865	HPRD:07922	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
19-PTNLD28-TUMOR_peak_52343	chr2	42370015	42370188	+	7.77638	NA	non-coding (NR_110584, exon 4 of 4)	non-coding (NR_110584, exon 4 of 4)	-26389	NM_001145076	27436	Hs.713173	NM_019063	HPRD:06310	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
19-PTNLD28-TUMOR_peak_30921	chr14	68640259	68640467	+	7.77638	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	353867	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_106081	chr9	128005653	128005756	+	7.77429	NA	Intergenic	Intergenic	-2038	NM_005347	3309	Hs.743241	NM_005347	HPRD:00682	HSPA5	BIP|GRP78|HEL-S-89n|MIF2	heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)	protein-coding
19-PTNLD28-TUMOR_peak_4608	chr1	85740994	85741117	+	7.77275	NA	promoter-TSS (NR_045484)	promoter-TSS (NR_045484)	-986	NR_045484	646626	Hs.193516	NR_045484		LOC646626	-	uncharacterized LOC646626	ncRNA
19-PTNLD28-TUMOR_peak_43975	chr17	79486006	79486161	+	7.77275	NA	Intergenic	CpG	-6191	NM_001199954	71	Hs.514581	NM_001614	HPRD:00017	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_50418	chr19	56151580	56151723	+	7.77275	NA	promoter-TSS (NM_207115)	promoter-TSS (NM_207115)	-741	NM_207115	51157	Hs.631551	NM_016202	HPRD:18353	ZNF580	-	zinc finger protein 580	protein-coding
19-PTNLD28-TUMOR_peak_94170	chr7	98419990	98420136	+	7.77058	NA	Intergenic	Intergenic	47610	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_46697	chr19	3033883	3034043	+	7.77037	NA	intron (NM_001144761, intron 2 of 19)	L2b|LINE|L2	-4351	NM_001144762	7089	Hs.332173	NM_003260	HPRD:03025	TLE2	ESG|ESG2|GRG2	transducin-like enhancer of split 2	protein-coding
19-PTNLD28-TUMOR_peak_46701	chr19	3057333	3057523	+	7.77037	NA	intron (NM_198969, intron 3 of 6)	intron (NM_198969, intron 3 of 6)	4943	NM_001130	166	Hs.515053	NM_001130	HPRD:02556	AES	AES-1|AES-2|ESP1|GRG|GRG5|TLE5	amino-terminal enhancer of split	protein-coding
19-PTNLD28-TUMOR_peak_43416	chr17	73400389	73400490	+	7.77037	NA	intron (NM_203506, intron 1 of 4)	intron (NM_203506, intron 1 of 4)	1350	NM_002086	2885	Hs.444356	NM_002086	HPRD:00150	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor-bound protein 2	protein-coding
19-PTNLD28-TUMOR_peak_82725	chr5	140857857	140858157	+	7.77037	NA	exon (NM_002588, exon 1 of 4)	exon (NM_002588, exon 1 of 4)	2438	NM_032403	5098	Hs.368160	NM_002588	HPRD:04693	PCDHGC3	PC43|PCDH-GAMMA-C3|PCDH2	protocadherin gamma subfamily C, 3	protein-coding
19-PTNLD28-TUMOR_peak_104304	chr9	89217741	89217860	+	7.76931	NA	Intergenic	Intergenic	-248398	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_49059	chr19	40747879	40748339	+	7.76931	NA	intron (NM_001243027, intron 5 of 13)	intron (NM_001243027, intron 5 of 13)	-15512	NM_024877	79935	Hs.631603	NM_024877	HPRD:08581	CNTD2	CCNP	cyclin N-terminal domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_18304	chr11	45124435	45124945	+	7.76931	NA	intron (NR_046338, intron 2 of 7)	intron (NR_046338, intron 2 of 7)	9126	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_57464	chr2	191428464	191428654	+	7.76931	NA	Intergenic	Intergenic	-29091	NM_001142645	100131211	Hs.659824	NM_001142645		TMEM194B	-	transmembrane protein 194B	protein-coding
19-PTNLD28-TUMOR_peak_43505	chr17	73976455	73976621	+	7.76724	NA	intron (NM_001113324, intron 1 of 3)	AluSx1|SINE|Alu	-1023	NM_001185039	51	Hs.464137	NM_004035	HPRD:02030	ACOX1	ACOX|PALMCOX|SCOX	acyl-CoA oxidase 1, palmitoyl	protein-coding
19-PTNLD28-TUMOR_peak_109902	chrX	153010400	153010587	+	7.76006	NA	TTS (NM_000033)	TTS (NM_000033)	-19158	NM_005393	5365	Hs.632833	NM_005393	HPRD:02198	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
19-PTNLD28-TUMOR_peak_33646	chr15	55581346	55581492	+	7.75728	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	594	NM_183235	5873	Hs.654978	NM_004580	HPRD:04845	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_24045	chr12	48344742	48344996	+	7.75728	NA	Intergenic	Intergenic	-12461	NM_001143842	79022	Hs.596726	NM_024056	HPRD:14690	TMEM106C	-	transmembrane protein 106C	protein-coding
19-PTNLD28-TUMOR_peak_98382	chr8	41055611	41055799	+	7.75728	NA	Intergenic	MIR3|SINE|MIR	111285	NM_003012	6422	Hs.213424	NM_003012	HPRD:09165	SFRP1	FRP|FRP-1|FRP1|FrzA|SARP2	secreted frizzled-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_35698	chr16	1132652	1132740	+	7.75728	NA	Intergenic	Intergenic	3915	NM_001053	6755	Hs.449840	NM_001053	HPRD:01677	SSTR5	SS-5-R	somatostatin receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_45990	chr18	56936464	56936565	+	7.75728	NA	exon (NM_013435, exon 3 of 3)	exon (NM_013435, exon 3 of 3)	4111	NM_013435	30062	Hs.278957	NM_013435	HPRD:03530	RAX	MCOP3|RX	retina and anterior neural fold homeobox	protein-coding
19-PTNLD28-TUMOR_peak_65662	chr22	41418198	41418335	+	7.75728	NA	Intergenic	CpG	-70251	NR_031694	100302237		NR_031694	miRBase:MI0006428	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
19-PTNLD28-TUMOR_peak_32765	chr15	29957808	29958071	+	7.75728	NA	Intergenic	Intergenic	-95012	NM_015307	23359	Hs.383564	NM_015307	ENSG00000104059	FAM189A1	TMEM228	family with sequence similarity 189, member A1	protein-coding
19-PTNLD28-TUMOR_peak_41717	chr17	42441028	42441285	+	7.75728	NA	promoter-TSS (NM_198475)	promoter-TSS (NM_198475)	79	NM_198475	284069	Hs.154001	NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171, member A2	protein-coding
19-PTNLD28-TUMOR_peak_49254	chr19	44008640	44008907	+	7.75728	NA	5' UTR (NM_198850, exon 1 of 16)	5' UTR (NM_198850, exon 1 of 16)	212	NM_198850	653583	Hs.631581	NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology-like domain, family B, member 3	protein-coding
19-PTNLD28-TUMOR_peak_70467	chr3	125927553	125927712	+	7.75728	NA	non-coding (NR_046383, exon 2 of 2)	non-coding (NR_046383, exon 2 of 2)	-27603	NM_001270364	10840	Hs.434435	NM_012190	HPRD:02594	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family, member L1	protein-coding
19-PTNLD28-TUMOR_peak_58860	chr2	232790082	232790192	+	7.75728	NA	exon (NM_024409, exon 2 of 3)	exon (NM_024409, exon 2 of 3)	901	NM_024409	4880	Hs.247916	NM_024409		NPPC	CNP|CNP2	natriuretic peptide C	protein-coding
19-PTNLD28-TUMOR_peak_49426	chr19	46181120	46181447	+	7.75580	NA	intron (NM_000164, intron 11 of 13)	CpG	-3017	NR_037512	100500845		NR_037512		MIR642B	-	microRNA 642b	ncRNA
19-PTNLD28-TUMOR_peak_2116	chr1	32674608	32674806	+	7.75406	NA	promoter-TSS (NM_001099434)	promoter-TSS (NM_001099434)	12	NM_001099434	149069	Hs.424588	NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_63165	chr21	33280654	33280894	+	7.75373	NA	intron (NM_014586, intron 1 of 10)	intron (NM_014586, intron 1 of 10)	35146	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_73526	chr3	195634759	195634920	+	7.75373	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	1041	NM_005781	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_82212	chr5	133513391	133513714	+	7.75373	NA	promoter-TSS (NM_170679)	promoter-TSS (NM_170679)	-828	NM_006930	6500	Hs.171626	NM_006930		SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase-associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_4970	chr1	94316425	94316538	+	7.75356	NA	Intergenic	LTR13|LTR|ERVK	-3775	NM_001261408	8412	Hs.36958	NM_003567	HPRD:05268	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
19-PTNLD28-TUMOR_peak_1134	chr1	17230569	17230668	+	7.75344	NA	Intergenic	AluYc3|SINE|Alu	-17827	NM_014675	9696	Hs.309403	NM_014675	HPRD:16758	CROCC	ROLT	ciliary rootlet coiled-coil, rootletin	protein-coding
19-PTNLD28-TUMOR_peak_90501	chr6	167034595	167034720	+	7.75120	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	6069	NM_021135	6196	Hs.655277	NM_021135	HPRD:03403	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_6286	chr1	145263505	145263625	+	7.75120	NA	intron (NM_203458, intron 2 of 4)	intron (NM_203458, intron 2 of 4)	-26205	NR_104217	101929780	Hs.534675	NR_104217		NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family, member 25, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80449	chr5	68799155	68799287	+	7.75120	NA	promoter-TSS (NM_001205255)	promoter-TSS (NM_001205255)	-783	NM_001205255	100506658	Hs.592605	NM_002538	ENSG00000197822	OCLN	BLCPMG|PPP1R115	occludin	protein-coding
19-PTNLD28-TUMOR_peak_1760	chr1	27675856	27676329	+	7.75120	NA	intron (NM_032872, intron 7 of 14)	CpG	7609	NM_032872	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_73928	chr4	2797292	2797493	+	7.75120	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	2642	NM_001122681	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_96253	chr7	149832702	149832859	+	7.75120	NA	Intergenic	Intergenic	167289	NM_001164459	653857	Hs.664579	NM_001164458	ENSG00000106526	ACTR3C	ARP11	ARP3 actin-related protein 3 homolog C (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_98511	chr8	42948046	42948205	+	7.75120	NA	promoter-TSS (NM_032237)	promoter-TSS (NM_032237)	-524	NM_001277971	84197	Hs.491646	NM_032237	HPRD:08668	POMK	MDDGA12|SGK196	protein-O-mannose kinase	protein-coding
19-PTNLD28-TUMOR_peak_57853	chr2	202903786	202903906	+	7.75120	NA	TTS (NM_003507)	TTS (NM_003507)	4536	NM_003507	8324	Hs.173859	NM_003507	HPRD:04560	FZD7	FzE3	frizzled class receptor 7	protein-coding
19-PTNLD28-TUMOR_peak_67872	chr3	45635272	45635379	+	7.75120	NA	promoter-TSS (NM_014240)	promoter-TSS (NM_014240)	-998	NM_014240	8994	Hs.193370	NM_014240		LIMD1	-	LIM domains containing 1	protein-coding
19-PTNLD28-TUMOR_peak_84254	chr5	176085172	176085274	+	7.75120	NA	3' UTR (NM_130465, exon 9 of 9)	3' UTR (NM_130465, exon 9 of 9)	10835	NM_012171	26262	Hs.532129	NM_012171	HPRD:18198	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
19-PTNLD28-TUMOR_peak_87773	chr6	45932922	45933024	+	7.74805	NA	intron (NM_001114086, intron 1 of 5)	intron (NM_001114086, intron 1 of 5)	-27639	NR_045673	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_58171	chr2	211336529	211336677	+	7.74805	NA	intron (NM_006055, intron 3 of 9)	intron (NM_006055, intron 3 of 9)	4826	NM_001136574	10314	Hs.13351	NM_006055	HPRD:16040	LANCL1	GPR69A|p40	LanC lantibiotic synthetase component C-like 1 (bacterial)	protein-coding
19-PTNLD28-TUMOR_peak_14325	chr10	75382979	75383117	+	7.74805	NA	Intergenic	AluJr4|SINE|Alu	18467	NM_021245	58529	Hs.238756	NM_021245	HPRD:05725	MYOZ1	CS-2|FATZ|MYOZ	myozenin 1	protein-coding
19-PTNLD28-TUMOR_peak_66099	chr22	50682896	50683054	+	7.74663	NA	TTS (NM_032019)	TTS (NM_032019)	425	NM_020461	85378	Hs.336431	NM_020461	HPRD:15589	TUBGCP6	GCP-6|GCP6|MCCRP|MCPHCR	tubulin, gamma complex associated protein 6	protein-coding
19-PTNLD28-TUMOR_peak_40059	chr17	8055823	8055963	+	7.74661	NA	promoter-TSS (NM_002616)	promoter-TSS (NM_002616)	-140	NM_002616	5187	Hs.445534	NM_002616	HPRD:03774	PER1	PER|RIGUI|hPER	period circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_51774	chr2	27928791	27928978	+	7.74654	NA	Intergenic	MIRc|SINE|MIR	-42177	NM_001282731	9913	Hs.6232	NM_014860	HPRD:18115	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	suppressor of Ty 7 (S. cerevisiae)-like	protein-coding
19-PTNLD28-TUMOR_peak_86095	chr6	26159030	26159196	+	7.74512	NA	TTS (NM_021063)	TTS (NM_021063)	764	NM_138720	3017	Hs.591797	NM_021063	HPRD:07535	HIST1H2BD	H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6	histone cluster 1, H2bd	protein-coding
19-PTNLD28-TUMOR_peak_61801	chr20	48976230	48976446	+	7.74381	NA	Intergenic	L2c|LINE|L2	-38459	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_12841	chr10	33226913	33227373	+	7.74381	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-2657	NM_033668	3688	Hs.643813	NM_002211	HPRD:00628	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	protein-coding
19-PTNLD28-TUMOR_peak_11722	chr10	3678863	3679149	+	7.74381	NA	Intergenic	Intergenic	148467	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_25332	chr12	73682868	73682961	+	7.74381	NA	Intergenic	L1HS|LINE|L1	129944	NR_110130	101928137	Hs.694666	NR_110130	ENSG00000258123	LOC101928137	-	uncharacterized LOC101928137	ncRNA
19-PTNLD28-TUMOR_peak_335	chr1	6085395	6085585	+	7.74381	NA	promoter-TSS (NM_172130)	promoter-TSS (NM_172130)	-583	NM_172130	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_89495	chr6	133119568	133119976	+	7.74381	NA	promoter-TSS (NM_052831)	promoter-TSS (NM_052831)	-25	NM_052831	116843	Hs.347144	NM_052831	HPRD:12869	SLC18B1	C6orf192|dJ55C23.6	solute carrier family 18, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_99928	chr8	104383623	104384090	+	7.74381	NA	promoter-TSS (NM_001256099)	promoter-TSS (NM_001256099)	113	NM_138455	115908	Hs.405614	NM_138455	HPRD:16772	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_48981	chr19	39635841	39636092	+	7.74381	NA	intron (NM_001014834, intron 1 of 7)	L1ME3C|LINE|L1	19546	NM_001014832	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_25156	chr12	68799217	68799367	+	7.74381	NA	Intergenic	Intergenic	45972	NR_120458	100507195	Hs.450772	NR_120458		LOC100507195	-	uncharacterized LOC100507195	ncRNA
19-PTNLD28-TUMOR_peak_7134	chr1	154956513	154956631	+	7.74059	NA	intron (NM_201398, intron 2 of 7)	intron (NM_201398, intron 2 of 7)	802	NM_001184892	80308	Hs.118666	NM_025207	HPRD:17887	FLAD1	FAD1|FADS	flavin adenine dinucleotide synthetase 1	protein-coding
19-PTNLD28-TUMOR_peak_8224	chr1	172469500	172469711	+	7.74045	NA	Intergenic	Intergenic	-31884	NM_016227	51430	Hs.204559	NM_014283	HPRD:12732	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
19-PTNLD28-TUMOR_peak_67843	chr3	45165901	45166137	+	7.73889	NA	intron (NM_022842, intron 1 of 8)	intron (NM_022842, intron 1 of 8)	21895	NM_022842	64866	Hs.476093	NM_022842	HPRD:16696	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27520	chr13	25497486	25497613	+	7.73813	NA	promoter-TSS (NR_047594)	promoter-TSS (NR_047594)	-522	NR_047594	55835	Hs.513379	NM_018451	HPRD:09876	CENPJ	BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4	centromere protein J	protein-coding
19-PTNLD28-TUMOR_peak_59048	chr2	237626927	237627072	+	7.73813	NA	Intergenic	Intergenic	148619	NM_020311	57007	Hs.471751	NM_020311	HPRD:09882	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_91035	chr7	4837854	4838034	+	7.73813	NA	TTS (NM_018059)	TTS (NM_018059)	-9674	NR_039800	100616465		NR_039800	miRBase:MI0017284	MIR4656	-	microRNA 4656	ncRNA
19-PTNLD28-TUMOR_peak_5452	chr1	110627366	110627476	+	7.73813	NA	Intergenic	CpG	-14099	NM_006492	257	Hs.669953	NM_006492		ALX3	FND|FND1	ALX homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_55606	chr2	129175811	129175914	+	7.73813	NA	Intergenic	SVA_E|Other|Other	-99691	NM_004807	9394	Hs.512841	NM_004807	HPRD:07274	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_93947	chr7	92462660	92462930	+	7.73625	NA	5' UTR (NM_001145306, exon 2 of 8)	5' UTR (NM_001145306, exon 2 of 8)	436	NM_001259	1021	Hs.119882	NM_001259	HPRD:04533	CDK6	PLSTIRE	cyclin-dependent kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_47242	chr19	10763510	10763684	+	7.73625	NA	non-coding (NR_024333, exon 1 of 1)	non-coding (NR_024333, exon 1 of 1)	951	NR_024333	147727	Hs.631616	NR_024333	ENSG00000267100	ILF3-AS1	-	ILF3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_15330	chr10	104070637	104070808	+	7.73600	NA	intron (NM_001199379, intron 3 of 39)	intron (NM_001199379, intron 3 of 39)	65467	NM_001199379	8729	Hs.290243	NM_004193	HPRD:04740	GBF1	ARF1GEF	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_7422	chr1	157661195	157661346	+	7.73600	NA	intron (NM_052939, intron 8 of 14)	intron (NM_052939, intron 8 of 14)	9377	NM_052939	115352	Hs.292449	NM_052939	HPRD:07352	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|SPAP2	Fc receptor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_80761	chr5	75140124	75140293	+	7.73600	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-126895	NM_001099271	134359	Hs.432726	NM_152408	HPRD:08188	POC5	C5orf37	POC5 centriolar protein	protein-coding
19-PTNLD28-TUMOR_peak_33724	chr15	58505281	58505391	+	7.73600	NA	Intergenic	Intergenic	74928	NM_020980	366	Hs.104624	NM_020980	HPRD:04223	AQP9	AQP-9|HsT17287|SSC1	aquaporin 9	protein-coding
19-PTNLD28-TUMOR_peak_71287	chr3	140178600	140178705	+	7.73600	NA	intron (NM_022131, intron 7 of 16)	intron (NM_022131, intron 7 of 16)	48979	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28181	chr13	48409849	48410182	+	7.73600	NA	Intergenic	MER51A|LTR|ERV1	165447	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_6911	chr1	152956354	152956569	+	7.73600	NA	promoter-TSS (NM_005987)	promoter-TSS (NM_005987)	-103	NM_001199828	6698	Hs.46320	NM_005987	HPRD:01647	SPRR1A	SPRK	small proline-rich protein 1A	protein-coding
19-PTNLD28-TUMOR_peak_94195	chr7	98865267	98865378	+	7.73600	NA	Intergenic	Intergenic	-5602	NR_002147	84176	Hs.621401	NR_002147	ENSG00000002079	MYH16	MHC20|MYH16P|MYH5	myosin, heavy chain 16 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_100338	chr8	120201551	120201849	+	7.73600	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-18910	NM_052886	114569	Hs.201083	NM_052886	HPRD:14351	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_107443	chrX	6626259	6626488	+	7.73600	NA	Intergenic	Intergenic	-173214	NM_016379	51481	Hs.170076	NM_016379	HPRD:18280	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
19-PTNLD28-TUMOR_peak_4177	chr1	67160908	67161106	+	7.73600	NA	intron (NM_032291, intron 17 of 24)	intron (NM_032291, intron 17 of 24)	-57133	NM_152665	200132	Hs.479226	NM_152665	HPRD:08287	TCTEX1D1	-	Tctex1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_5220	chr1	102007447	102007578	+	7.73600	NA	Intergenic	Intergenic	-201061	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-31P	RNU6-31|RNU6-6	RNA, U6 small nuclear 31, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_11458	chr1	245543585	245543685	+	7.73600	NA	intron (NM_018012, intron 3 of 14)	intron (NM_018012, intron 3 of 14)	225348	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_44663	chr18	12607028	12607188	+	7.73600	NA	intron (NM_020148, intron 2 of 15)	intron (NM_020148, intron 2 of 15)	49623	NM_001128627	56907	Hs.515283	NM_020148	HPRD:11600	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_77898	chr4	164133896	164133996	+	7.73600	NA	Intergenic	L1PA3|LINE|L1	-45873	NM_001128931	92345	Hs.129095	NM_138386	HPRD:10054	NAF1	-	nuclear assembly factor 1 ribonucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_24696	chr12	56794550	56794689	+	7.73600	NA	Intergenic	LTR5_Hs|LTR|ERVK	-38036	NM_001638	319	Hs.534302	NM_001638	HPRD:00137	APOF	Apo-F|LTIP	apolipoprotein F	protein-coding
19-PTNLD28-TUMOR_peak_53604	chr2	75165614	75165793	+	7.73600	NA	TTS (NR_125792)	TTS (NR_125792)	-20072	NM_019896	56655	Hs.469060	NM_019896		POLE4	YHHQ1|p12	polymerase (DNA-directed), epsilon 4, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_104331	chr9	89722112	89722361	+	7.73600	NA	Intergenic	Intergenic	-22096	NR_036691	494127	Hs.626316	NR_036691		LOC494127	-	NFYC pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103886	chr9	77039294	77039481	+	7.73600	NA	intron (NR_106746, intron 1 of 7)	L1PA2|LINE|L1	52940	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
19-PTNLD28-TUMOR_peak_30455	chr14	56072652	56072785	+	7.73600	NA	intron (NR_073128, intron 2 of 43)	intron (NR_073128, intron 2 of 43)	25793	NR_073128	3895	Hs.509414	NM_004986	HPRD:02661	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1 (kinesin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_31768	chr14	93412710	93413056	+	7.73600	NA	intron (NM_001142593, intron 9 of 10)	intron (NM_001142593, intron 9 of 10)	23438	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_27154	chr12	129238859	129239078	+	7.73600	NA	Intergenic	Intergenic	69573	NM_145648	121260	Hs.507260	NM_145648	ENSG00000139370	SLC15A4	PHT1|PTR4	solute carrier family 15 (oligopeptide transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_41507	chr17	40336181	40336375	+	7.73600	NA	exon (NM_001524, exon 2 of 2)	exon (NM_001524, exon 2 of 2)	1192	NM_001524	3060	Hs.158348	NM_001524	HPRD:03836	HCRT	NRCLP1|OX|PPOX	hypocretin (orexin) neuropeptide precursor	protein-coding
19-PTNLD28-TUMOR_peak_22266	chr11	132952757	132952938	+	7.73600	NA	intron (NM_001012393, intron 1 of 7)	CpG	-139810	NM_002545	4978	Hs.4817	NM_002545	HPRD:07198	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule-like	protein-coding
19-PTNLD28-TUMOR_peak_89768	chr6	143189264	143189385	+	7.73600	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	77014	NM_006734	3097	Hs.510172	NM_006734	HPRD:00881	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_95195	chr7	129016452	129016548	+	7.73600	NA	intron (NM_001130722, intron 1 of 16)	intron (NM_001130722, intron 1 of 16)	1016	NM_001130722	23382	Hs.600789	NM_015328	HPRD:11113	AHCYL2	ADOHCYASE3	adenosylhomocysteinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_29150	chr13	113689396	113689539	+	7.73600	NA	intron (NM_001112732, intron 3 of 29)	intron (NM_001112732, intron 3 of 29)	33439	NM_024979	23263	Hs.170422	NM_024979	HPRD:14371	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence-like	protein-coding
19-PTNLD28-TUMOR_peak_71887	chr3	156035285	156035461	+	7.73600	NA	intron (NM_172159, intron 1 of 13)	intron (NM_172159, intron 1 of 13)	26597	NM_172159	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_72370	chr3	172167558	172167820	+	7.73600	NA	Intergenic	CpG	-1443	NM_004122	2693	Hs.130212	NM_004122	HPRD:03541	GHSR	-	growth hormone secretagogue receptor	protein-coding
19-PTNLD28-TUMOR_peak_55817	chr2	133142568	133142661	+	7.73600	NA	Intergenic	Intergenic	-31533	NM_001508	2863	Hs.432395	NM_001508	HPRD:04198	GPR39	-	G protein-coupled receptor 39	protein-coding
19-PTNLD28-TUMOR_peak_97510	chr8	21524785	21525081	+	7.73600	NA	Intergenic	Intergenic	121413	NM_001495	2675	Hs.441202	NM_001495	HPRD:11801	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_53184	chr2	66591722	66591812	+	7.73600	NA	Intergenic	Intergenic	-6307	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_51309	chr2	16463262	16463416	+	7.73600	NA	Intergenic	Intergenic	-381494	NR_110230	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_94690	chr7	105622334	105622493	+	7.73600	NA	intron (NM_001301161, intron 2 of 17)	L2a|LINE|L2	18756	NM_001301161	222256	Hs.150120	NM_152750	HPRD:08042	CDHR3	CDH28	cadherin-related family member 3	protein-coding
19-PTNLD28-TUMOR_peak_4963	chr1	94288339	94288586	+	7.73600	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-23926	NR_030621	100126348		NR_030621	miRBase:MI0005567	MIR760	MIRN760|hsa-mir-760	microRNA 760	ncRNA
19-PTNLD28-TUMOR_peak_76800	chr4	120155042	120155239	+	7.73600	NA	intron (NM_019050, intron 3 of 17)	intron (NM_019050, intron 3 of 17)	21358	NM_019050	54532	Hs.431081	NM_019050	HPRD:11669	USP53	-	ubiquitin specific peptidase 53	protein-coding
19-PTNLD28-TUMOR_peak_19215	chr11	64869728	64869840	+	7.73600	NA	intron (NR_073519, intron 2 of 9)	intron (NR_073519, intron 2 of 9)	6197	NM_013265	738	Hs.277517	NM_013265	HPRD:12605	VPS51	ANG2|ANG3|C11orf2|C11orf3|FFR	vacuolar protein sorting 51 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_108205	chrX	47905545	47905672	+	7.73600	NA	Intergenic	Intergenic	-10091	NR_046742	100874120	Hs.738239	NR_046742		ZNF630-AS1	-	ZNF630 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44857	chr18	20397963	20398079	+	7.73600	NA	Intergenic	Intergenic	-31221	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_104153	chr9	85675901	85676049	+	7.73430	NA	intron (NM_152573, intron 1 of 16)	intron (NM_152573, intron 1 of 16)	2068	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_35983	chr16	4357288	4357439	+	7.73430	NA	Intergenic	L2a|LINE|L2	20978	NR_110901	101926896	Hs.670300	NR_110901		LOC101926896	-	uncharacterized LOC101926896	ncRNA
19-PTNLD28-TUMOR_peak_2083	chr1	32288401	32288694	+	7.73399	NA	Intergenic	LTR67B|LTR|ERVL	-6895	NM_144569	90853	Hs.62604	NM_144569	HPRD:08057	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_18802	chr11	60666888	60667023	+	7.73399	NA	intron (NM_014502, intron 10 of 15)	intron (NM_014502, intron 10 of 15)	7106	NM_014502	27339	Hs.502705	NM_014502	HPRD:12214	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
19-PTNLD28-TUMOR_peak_58772	chr2	231482028	231482153	+	7.73399	NA	Intergenic	Intergenic	83154	NR_040038	151475	Hs.528154	NR_040038	ENSG00000226125	LOC151475	-	uncharacterized LOC151475	ncRNA
19-PTNLD28-TUMOR_peak_33334	chr15	43662914	43663307	+	7.73399	NA	promoter-TSS (NM_001286414)	promoter-TSS (NM_001286414)	-147	NM_001286414	27229	Hs.584887	NM_014444	HPRD:10616	TUBGCP4	76P|GCP-4|GCP4|Grip76	tubulin, gamma complex associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_78846	chr5	9727234	9727358	+	7.73399	NA	intron (NR_027112, intron 5 of 12)	intron (NR_027112, intron 5 of 12)	-96833	NM_019599	50834	Hs.567492	NM_019599	HPRD:07267	TAS2R1	T2R1|TRB7	taste receptor, type 2, member 1	protein-coding
19-PTNLD28-TUMOR_peak_13673	chr10	54716345	54716485	+	7.73399	NA	Intergenic	MER77|LTR|ERVL	-184955	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_77989	chr4	169706379	169706521	+	7.73399	NA	intron (NM_016081, intron 10 of 20)	intron (NM_016081, intron 10 of 20)	-46706	NM_001166110	23022	Hs.151220	NM_016081	HPRD:09731	PALLD	CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
19-PTNLD28-TUMOR_peak_106348	chr9	132083115	132083299	+	7.73399	NA	promoter-TSS (NM_001012715)	promoter-TSS (NM_001012715)	-88	NM_001012715	414318	Hs.449434	NM_001012715		C9orf106	bA65J3.5	chromosome 9 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_97275	chr8	15362615	15362791	+	7.73399	NA	Intergenic	Intergenic	-34893	NM_006765	7991	Hs.426324	NM_006765	HPRD:03228	TUSC3	D8S1992|M33|MRT22|MRT7|N33|OST3A	tumor suppressor candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_45161	chr18	31020154	31020254	+	7.73399	NA	promoter-TSS (NM_001105528)	promoter-TSS (NM_001105528)	-159	NM_001105528	374864	Hs.115461	NM_198995	HPRD:12691	CCDC178	C18orf34	coiled-coil domain containing 178	protein-coding
19-PTNLD28-TUMOR_peak_79304	chr5	31626316	31626608	+	7.73399	NA	Intergenic	Intergenic	94089	NM_018356	55322	Hs.519246	NM_018356	HPRD:07740	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
19-PTNLD28-TUMOR_peak_27619	chr13	29393968	29394194	+	7.73399	NA	Intergenic	CpG	-100931	NM_181785	283537	Hs.117167	NM_181785	HPRD:14146	SLC46A3	FKSG16	solute carrier family 46, member 3	protein-coding
19-PTNLD28-TUMOR_peak_29361	chr14	21325898	21326014	+	7.73399	NA	Intergenic	Intergenic	-33606	NM_002935	6037	Hs.73839	NM_002935	HPRD:00575	RNASE3	ECP|RNS3	ribonuclease, RNase A family, 3	protein-coding
19-PTNLD28-TUMOR_peak_44961	chr18	22067758	22067851	+	7.73399	NA	Intergenic	Intergenic	27211	NM_021624	59340	Hs.287388	NM_021624	HPRD:06004	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
19-PTNLD28-TUMOR_peak_62014	chr20	51771154	51771302	+	7.73399	NA	intron (NM_173485, intron 1 of 2)	MIRb|SINE|MIR	-30594	NM_001193421	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_94019	chr7	94932909	94933071	+	7.73399	NA	intron (NM_000446, intron 7 of 8)	L2b|LINE|L2	20894	NM_000446	5444	Hs.370995	NM_000446		PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
19-PTNLD28-TUMOR_peak_13988	chr10	70303356	70303520	+	7.73399	NA	Intergenic	LTR47B|LTR|ERVL	-16158	NM_152707	8034	Hs.180408	NM_152707		SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hML7	solute carrier family 25 (mitochondrial carrier), member 16	protein-coding
19-PTNLD28-TUMOR_peak_100333	chr8	120133950	120134160	+	7.73399	NA	Intergenic	Intergenic	54631	NM_006438	10584	Hs.176615	NM_006438		COLEC10	CLL1	collectin sub-family member 10 (C-type lectin)	protein-coding
19-PTNLD28-TUMOR_peak_87985	chr6	52794705	52794830	+	7.73399	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-20271	NM_000847	2940	Hs.102484	NM_000847	HPRD:07290	GSTA3	GSTA3-3|GTA3	glutathione S-transferase alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_60775	chr20	34757506	34757640	+	7.73399	NA	intron (NM_012156, intron 1 of 21)	intron (NM_012156, intron 1 of 21)	14911	NM_012156	2036	Hs.437422	NM_012156	HPRD:04193	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_32396	chr14	106477902	106478085	+	7.73399	NA	Intergenic	Intergenic	-39635	NR_002224	8755	Hs.662288	NR_002224	ENSG00000233988	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_13754	chr10	61192338	61192570	+	7.73399	NA	Intergenic	Intergenic	-69793	NM_001143773	220965	Hs.607594	NM_198215	HPRD:16875	FAM13C	FAM13C1	family with sequence similarity 13, member C	protein-coding
19-PTNLD28-TUMOR_peak_67135	chr3	23213679	23213781	+	7.73399	NA	Intergenic	Intergenic	-31054	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_1491	chr1	24136299	24136439	+	7.73399	NA	intron (NM_001166059, intron 4 of 6)	intron (NM_001166059, intron 4 of 6)	-9075	NM_001008216	2582	Hs.632380	NM_000403	HPRD:06092	GALE	SDR1E1	UDP-galactose-4-epimerase	protein-coding
19-PTNLD28-TUMOR_peak_21359	chr11	116064542	116064668	+	7.73399	NA	Intergenic	Intergenic	-433687	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_63063	chr21	30505687	30505847	+	7.73397	NA	intron (NM_001286619, intron 4 of 6)	intron (NM_001286619, intron 4 of 6)	2961	NM_001286620	56911	Hs.222802	NM_020152	HPRD:10764	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_16703	chr11	3013043	3013413	+	7.73397	NA	intron (NM_005969, intron 1 of 15)	CpG	379	NM_005969	4676	Hs.731784	NM_005969	HPRD:11873	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1-like 4	protein-coding
19-PTNLD28-TUMOR_peak_10937	chr1	233680199	233680290	+	7.73397	NA	Intergenic	Intergenic	-69506	NM_002245	3775	Hs.208544	NM_002245	HPRD:03447	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	potassium channel, subfamily K, member 1	protein-coding
19-PTNLD28-TUMOR_peak_3052	chr1	44399985	44400082	+	7.73236	NA	intron (NM_057090, intron 2 of 4)	intron (NM_057090, intron 2 of 4)	1041	NM_057090	9048	Hs.632404	NM_003976	HPRD:04863	ARTN	ENOVIN|EVN|NBN	artemin	protein-coding
19-PTNLD28-TUMOR_peak_13433	chr10	48247486	48247575	+	7.72598	NA	promoter-TSS (NM_001137549)	promoter-TSS (NM_001137549)	-132	NM_001137548	644054	Hs.99249	NM_001137548	ENSG00000188279	FAM25C	bA164N7.4	family with sequence similarity 25, member C	protein-coding
19-PTNLD28-TUMOR_peak_22915	chr12	8185494	8185584	+	7.72347	NA	5' UTR (NM_018416, exon 1 of 11)	5' UTR (NM_018416, exon 1 of 11)	180	NM_018416	55810	Hs.120844	NM_018416	HPRD:17014	FOXJ2	FHX	forkhead box J2	protein-coding
19-PTNLD28-TUMOR_peak_22185	chr11	130401155	130401280	+	7.72347	NA	Intergenic	Intergenic	82348	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_78346	chr4	186131502	186131782	+	7.72347	NA	intron (NM_031953, intron 1 of 18)	CpG	358	NM_031953	83891	Hs.369091	NM_031953	HPRD:15414	SNX25	SBBI31	sorting nexin 25	protein-coding
19-PTNLD28-TUMOR_peak_65660	chr22	41417660	41417794	+	7.72317	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	70376	NM_014248	9978	Hs.474949	NM_014248		RBX1	BA554C12.1|RNF75|ROC1	ring-box 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_60299	chr20	25203909	25204063	+	7.72317	NA	intron (NM_001114089, intron 11 of 13)	intron (NM_001114089, intron 11 of 13)	-24720	NM_002862	5834	Hs.368157	NM_002862	HPRD:00720	PYGB	GPBB	phosphorylase, glycogen; brain	protein-coding
19-PTNLD28-TUMOR_peak_52363	chr2	43054859	43055000	+	7.72317	NA	Intergenic	CpG	-35178	NM_012205	23498	Hs.368805	NM_012205	HPRD:05158	HAAO	3-HAO|HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
19-PTNLD28-TUMOR_peak_87732	chr6	45389817	45390126	+	7.72317	NA	promoter-TSS (NM_001278478)	promoter-TSS (NM_001278478)	-343	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_22666	chr12	5539918	5540006	+	7.72317	NA	Intergenic	CpG	-1318	NM_001102654	4908	Hs.99171	NM_002527	HPRD:01219	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
19-PTNLD28-TUMOR_peak_18612	chr11	56928882	56929171	+	7.72317	NA	Intergenic	L2c|LINE|L2	-20195	NM_001005210	219527	Hs.199853	NM_001005210	HPRD:16990	LRRC55	-	leucine rich repeat containing 55	protein-coding
19-PTNLD28-TUMOR_peak_29134	chr13	113548008	113548158	+	7.72317	NA	Intergenic	MIRb|SINE|MIR	74869	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52553	chr2	46325795	46325995	+	7.72317	NA	intron (NM_005400, intron 11 of 14)	intron (NM_005400, intron 11 of 14)	-198646	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25195	chr12	69493144	69493261	+	7.72317	NA	Intergenic	Intergenic	-136182	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_9548	chr1	204599657	204599775	+	7.72317	NA	intron (NM_201630, intron 1 of 1)	intron (NM_201630, intron 1 of 1)	54765	NM_006338	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_55261	chr2	119685261	119685584	+	7.72317	NA	Intergenic	Intergenic	-14323	NM_006770	8685	Hs.67726	NM_006770	HPRD:05337	MARCO	SCARA2	macrophage receptor with collagenous structure	protein-coding
19-PTNLD28-TUMOR_peak_101090	chr8	133876537	133876706	+	7.72317	NA	Intergenic	Intergenic	-2584	NM_003235	7038	Hs.654591	NM_003235	HPRD:01782	TG	AITD3|TGN	thyroglobulin	protein-coding
19-PTNLD28-TUMOR_peak_97493	chr8	21001462	21001629	+	7.72317	NA	Intergenic	Intergenic	-154205	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_68623	chr3	58608685	58608817	+	7.72317	NA	intron (NM_001282714, intron 1 of 4)	intron (NM_001282714, intron 1 of 4)	4586	NM_001282714	11170	Hs.506357	NM_007177	HPRD:09753	FAM107A	DRR1|TU3A	family with sequence similarity 107, member A	protein-coding
19-PTNLD28-TUMOR_peak_5318	chr1	109186308	109186404	+	7.72317	NA	Intergenic	Intergenic	17388	NM_001102592	113802	Hs.7962	NM_144584	HPRD:08086	HENMT1	C1orf59|HEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding
19-PTNLD28-TUMOR_peak_9558	chr1	204692483	204692584	+	7.72317	NA	Intergenic	Intergenic	-37936	NM_201630	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_7326	chr1	156556931	156557024	+	7.72255	NA	TTS (NM_001105669)	TTS (NM_001105669)	-4581	NM_144772	128240	Hs.528320	NM_144772	HPRD:16397	APOA1BP	AIBP|YJEFN1	apolipoprotein A-I binding protein	protein-coding
19-PTNLD28-TUMOR_peak_39373	chr16	88704768	88704988	+	7.71936	NA	promoter-TSS (NM_013278)	promoter-TSS (NM_013278)	-123	NM_013278	27189	Hs.278911	NM_013278	HPRD:06863	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
19-PTNLD28-TUMOR_peak_104321	chr9	89561445	89561649	+	7.71884	NA	exon (NM_002048, exon 1 of 1)	exon (NM_002048, exon 1 of 1)	557	NM_002048	2619	Hs.65029	NM_002048	HPRD:00747	GAS1	-	growth arrest-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_96820	chr8	23880	24033	+	7.71884	NA	Intergenic	Intergenic	93068	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_2407	chr1	36606182	36606368	+	7.71354	NA	intron (NM_001270895, intron 1 of 4)	intron (NM_001270895, intron 1 of 4)	8840	NR_073098	27095	Hs.523131	NM_014408	HPRD:11644	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
19-PTNLD28-TUMOR_peak_82058	chr5	131132063	131132325	+	7.71354	NA	intron (NM_001008738, intron 1 of 16)	CpG	562	NM_001008738	96459	Hs.591273	NM_133372	HPRD:17233	FNIP1	-	folliculin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50731	chr2	394424	394636	+	7.71354	NA	Intergenic	Intergenic	-106222	NM_001002919	285016	Hs.355207	NM_001002919	HPRD:17344	FAM150B	PRO1097|RGPG542	family with sequence similarity 150, member B	protein-coding
19-PTNLD28-TUMOR_peak_66738	chr3	13521119	13521354	+	7.71264	NA	promoter-TSS (NM_024827)	promoter-TSS (NM_024827)	317	NR_046690	100874101	Hs.535701	NR_046690		HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63578	chr21	40720898	40721020	+	7.71264	NA	promoter-TSS (NM_004965)	promoter-TSS (NM_004965)	88	NM_004965	3150	Hs.356285	NM_004965	HPRD:01231	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
19-PTNLD28-TUMOR_peak_24727	chr12	57116034	57116219	+	7.71264	NA	intron (NM_001113203, intron 2 of 10)	intron (NM_001113203, intron 2 of 10)	2940	NR_045277	4666	Hs.505735	NM_005594	HPRD:03137	NACA	NACA1|skNAC	nascent polypeptide-associated complex alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_32188	chr14	103610075	103610173	+	7.71264	NA	Intergenic	MER41C|LTR|ERV1	17460	NM_006291	7127	Hs.525607	NM_006291	HPRD:04487	TNFAIP2	B94|EXOC3L3	tumor necrosis factor, alpha-induced protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18835	chr11	60963325	60963460	+	7.71264	NA	Intergenic	Intergenic	-7575	NM_001079807	643834	Hs.601055	NM_001079807		PGA3	-	pepsinogen 3, group I (pepsinogen A)	protein-coding
19-PTNLD28-TUMOR_peak_109965	chrX	153617598	153617981	+	7.71074	NA	Intergenic	CpG	-8782	NM_001256580	6134	Hs.534404	NM_006013	HPRD:02421	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding
19-PTNLD28-TUMOR_peak_95131	chr7	128313148	128313255	+	7.70752	NA	intron (NM_001128926, intron 1 of 4)	intron (NM_001128926, intron 1 of 4)	863	NM_001290254	346653	Hs.445236	NM_001012454	HPRD:17840	FAM71F2	FAM137B	family with sequence similarity 71, member F2	protein-coding
19-PTNLD28-TUMOR_peak_106487	chr9	134378557	134378793	+	7.70752	NA	5' UTR (NM_001136113, exon 1 of 20)	5' UTR (NM_001136113, exon 1 of 20)	386	NM_001077365	10585	Hs.522449	NM_007171	HPRD:06305	POMT1	LGMD2K|MDDGA1|MDDGB1|MDDGC1|RT	protein-O-mannosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_20650	chr11	94659855	94660061	+	7.70506	NA	Intergenic	Intergenic	46818	NM_016403	51503	Hs.503597	NM_016403	HPRD:13703	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_89496	chr6	133120229	133120321	+	7.70506	NA	promoter-TSS (NM_052831)	promoter-TSS (NM_052831)	-528	NM_052831	116843	Hs.347144	NM_052831	HPRD:12869	SLC18B1	C6orf192|dJ55C23.6	solute carrier family 18, subfamily B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11188	chr1	237238911	237239169	+	7.70506	NA	intron (NM_001035, intron 1 of 104)	L1HS|LINE|L1	33338	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_91988	chr7	35043770	35043886	+	7.70506	NA	intron (NM_015283, intron 6 of 21)	MER76|LTR|ERVL	33825	NM_015283	23333	Hs.408623	NM_015283	ENSG00000173852	DPY19L1	-	dpy-19-like 1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_65130	chr22	31603371	31603603	+	7.70506	NA	TTS (NR_024210)	TTS (NR_024210)	-4763	NM_005569	3985	Hs.474596	NM_005569	HPRD:03585	LIMK2	-	LIM domain kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_5543	chr1	112113413	112113609	+	7.70506	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-6914	NM_001081976	140	Hs.281342	NM_000677	HPRD:08984	ADORA3	A3AR|AD026|bA552M11.5	adenosine A3 receptor	protein-coding
19-PTNLD28-TUMOR_peak_52114	chr2	36687116	36687212	+	7.70506	NA	intron (NM_016441, intron 4 of 16)	intron (NM_016441, intron 4 of 16)	103794	NM_016441	51232	Hs.699247	NM_016441	HPRD:08392	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1 (chordin-like)	protein-coding
19-PTNLD28-TUMOR_peak_73904	chr4	2431753	2431957	+	7.70506	NA	intron (NM_001193282, intron 2 of 15)	CpG	11183	NM_001193282	402160	Hs.443116	NM_001193282		CFAP99	-	cilia and flagella associated protein 99	protein-coding
19-PTNLD28-TUMOR_peak_93794	chr7	86941731	86941819	+	7.70506	NA	Intergenic	Intergenic	33033	NR_015381	11257	Hs.274329	NM_007233	HPRD:10276	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1	TP53 target 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_59279	chr2	241937709	241937853	+	7.70506	NA	promoter-TSS (NM_001080437)	promoter-TSS (NM_001080437)	-474	NM_001080437	25992	Hs.471834	NM_001080437	ENSG00000162804	SNED1	SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_23483	chr12	26645523	26645642	+	7.70506	NA	intron (NM_002223, intron 39 of 56)	L1MA6|LINE|L1	297076	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_31349	chr14	76044152	76044321	+	7.70506	NA	promoter-TSS (NM_017791)	promoter-TSS (NM_017791)	-704	NM_017791	55640	Hs.509966	NM_017791	HPRD:12654	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	feline leukemia virus subgroup C cellular receptor family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_19601	chr11	68451944	68452097	+	7.70506	NA	promoter-TSS (NM_015973)	promoter-TSS (NM_015973)	37	NM_015973	51083	Hs.278959	NM_015973	HPRD:00658	GAL	GAL-GMAP|GALN|GLNN|GMAP	galanin/GMAP prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_94223	chr7	99177645	99177991	+	7.70506	NA	Intergenic	CpG	-18084	NM_001195542	100289187	Hs.729333	NM_001195541		GS1-259H13.2	-	transmembrane protein 225-like	protein-coding
19-PTNLD28-TUMOR_peak_109190	chrX	111074700	111074876	+	7.70506	NA	intron (NM_012471, intron 7 of 10)	intron (NM_012471, intron 7 of 10)	-44491	NM_001195576	100329135	Hs.247868	NM_001195576		TRPC5OS	TRPC5-AS1	TRPC5 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_63631	chr21	42396899	42397169	+	7.70506	NA	Intergenic	Intergenic	122957	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_21563	chr11	119066479	119066674	+	7.70506	NA	promoter-TSS (NM_001145018)	promoter-TSS (NM_001145018)	8	NM_001145018	283152	Hs.114777	NM_001033658	HPRD:18762	CCDC153	-	coiled-coil domain containing 153	protein-coding
19-PTNLD28-TUMOR_peak_7354	chr1	156682426	156682786	+	7.70336	NA	Intergenic	Intergenic	-6998	NM_001199723	1382	Hs.405662	NM_001878	HPRD:08353	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_4944	chr1	94158013	94158218	+	7.70336	NA	intron (NM_001261408, intron 3 of 13)	MIRb|SINE|MIR	-10721	NM_003567	8412	Hs.36958	NM_003567	HPRD:05268	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
19-PTNLD28-TUMOR_peak_45502	chr18	43904661	43904814	+	7.70088	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-9450	NM_152470	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding
19-PTNLD28-TUMOR_peak_7440	chr1	157961842	157962049	+	7.70088	NA	Intergenic	Intergenic	-1118	NM_001286349	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_84132	chr5	173838267	173838588	+	7.70061	NA	intron (NR_125806, intron 1 of 5)	intron (NR_125806, intron 1 of 5)	75070	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_4583	chr1	85238168	85238269	+	7.70061	NA	Intergenic	Intergenic	-81978	NM_014021	117178	Hs.22587	NM_014021	HPRD:10566	SSX2IP	ADIP	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_18069	chr11	35640392	35640561	+	7.70061	NA	exon (NM_014344, exon 1 of 1)	exon (NM_014344, exon 1 of 1)	741	NM_014344	24147	Hs.39384	NM_014344	HPRD:16897	FJX1	-	four jointed box 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_19328	chr11	65639624	65639833	+	7.70018	NA	non-coding (NR_037718, exon 2 of 12)	non-coding (NR_037718, exon 2 of 12)	677	NR_037718	30008	Hs.731454	NM_016938	HPRD:05221	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin-like extracellular matrix protein 2	protein-coding
19-PTNLD28-TUMOR_peak_62958	chr21	26741929	26742126	+	7.70018	NA	Intergenic	Intergenic	61986	NR_024027	54072	Hs.234016	NM_058184	HPRD:10748	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
19-PTNLD28-TUMOR_peak_106694	chr9	138393070	138393176	+	7.70018	NA	non-coding (NR_051969, exon 2 of 4)	non-coding (NR_051969, exon 2 of 4)	646	NR_051968	51116	Hs.382044	NM_016034	HPRD:14783	MRPS2	MRP-S2|S2mt	mitochondrial ribosomal protein S2	protein-coding
19-PTNLD28-TUMOR_peak_38059	chr16	57658275	57658458	+	7.69682	NA	intron (NM_001145770, intron 1 of 14)	AluJo|SINE|Alu	-3772	NM_201525	9289	Hs.513633	NM_005682	HPRD:06824	GPR56	BFPP|BPPR|TM7LN4|TM7XN1	G protein-coupled receptor 56	protein-coding
19-PTNLD28-TUMOR_peak_96173	chr7	148684290	148684399	+	7.69581	NA	Intergenic	Intergenic	41438	NM_004911	9601	Hs.93659	NM_004911	HPRD:06501	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_62995	chr21	28213338	28213526	+	7.69325	NA	exon (NM_006988, exon 4 of 9)	exon (NM_006988, exon 4 of 9)	4296	NM_006988	9510	Hs.643357	NM_006988	HPRD:05530	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif, 1	protein-coding
19-PTNLD28-TUMOR_peak_62971	chr21	27107882	27108021	+	7.69325	NA	promoter-TSS (NM_001003703)	promoter-TSS (NM_001003703)	14	NM_001003701	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_43107	chr17	66196995	66197138	+	7.69259	NA	TTS (NR_027283)	TTS (NR_027283)	2265	NR_027283	440461	Hs.661522	NR_027283		LOC440461	-	Rho GTPase activating protein 27 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_19575	chr11	67976763	67976860	+	7.69259	NA	intron (NM_001300909, intron 1 of 8)	L2a|LINE|L2	3973	NM_016028	51111	Hs.632120	NM_016028	HPRD:11616	SUV420H1	CGI85|KMT5B	suppressor of variegation 4-20 homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_84364	chr5	177371395	177371515	+	7.69259	NA	Intergenic	CpG	51788	NM_006261	5626	Hs.158301	NM_006261	HPRD:03325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_12527	chr10	26223200	26223476	+	7.68917	NA	promoter-TSS (NR_120650)	promoter-TSS (NR_120650)	336	NM_017433	53904	Hs.662630	NM_017433	HPRD:06008	MYO3A	DFNB30	myosin IIIA	protein-coding
19-PTNLD28-TUMOR_peak_58731	chr2	228735892	228735995	+	7.68917	NA	promoter-TSS (NM_178821)	promoter-TSS (NM_178821)	-384	NM_178821	164781	Hs.424594	NM_178821	HPRD:08079	DAW1	ODA16|WDR69	dynein assembly factor with WDR repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_36789	chr16	22398404	22398609	+	7.68917	NA	Intergenic	Intergenic	-12568	NM_001802	1039	Hs.513430	NM_001802	HPRD:06681	CDR2	CDR62|Yo	cerebellar degeneration-related protein 2, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_109907	chrX	153067348	153067484	+	7.68917	NA	TTS (NM_032512)	TTS (NM_032512)	7397	NM_006280	6748	Hs.409223	NM_006280	HPRD:02101	SSR4	TRAPD	signal sequence receptor, delta	protein-coding
19-PTNLD28-TUMOR_peak_63524	chr21	40033233	40033477	+	7.68917	NA	promoter-TSS (NM_001243428)	promoter-TSS (NM_001243428)	349	NR_111949	2078	Hs.473819	NM_004449	HPRD:01298	ERG	erg-3|p55	v-ets avian erythroblastosis virus E26 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_89735	chr6	142022045	142022222	+	7.68917	NA	Intergenic	Intergenic	387803	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_94197	chr7	98906243	98906413	+	7.68917	NA	Intergenic	MER5A|DNA|hAT-Charlie	-17168	NM_001190996	10552	Hs.124126	NM_006409	HPRD:07252	ARPC1A	Arc40|HEL-68|SOP2Hs|SOP2L	actin related protein 2/3 complex, subunit 1A, 41kDa	protein-coding
19-PTNLD28-TUMOR_peak_40751	chr17	26124723	26124907	+	7.68917	NA	intron (NM_000625, intron 2 of 26)	intron (NM_000625, intron 2 of 26)	2740	NM_000625	4843	Hs.709191	NM_000625	HPRD:01225	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2, inducible	protein-coding
19-PTNLD28-TUMOR_peak_69741	chr3	111546151	111546255	+	7.68917	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	-31824	NM_001134438	90102	Hs.603252	NM_145753	HPRD:06611	PHLDB2	LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92412	chr7	47128479	47128644	+	7.68917	NA	Intergenic	Intergenic	493181	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_21364	chr11	116147338	116147527	+	7.68917	NA	Intergenic	Intergenic	496282	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_49333	chr19	45267579	45267741	+	7.68917	NA	Intergenic	AluJo|SINE|Alu	5746	NR_107052	102465879		NR_107052		MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
19-PTNLD28-TUMOR_peak_20495	chr11	87908297	87908605	+	7.68917	NA	exon (NM_022337, exon 1 of 3)	exon (NM_022337, exon 1 of 3)	184	NM_022337	23682	Hs.591975	NM_022337	HPRD:05889	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_26294	chr12	111079410	111079553	+	7.68917	NA	intron (NM_001173976, intron 11 of 14)	intron (NM_001173976, intron 11 of 14)	27569	NM_001173975	79600	Hs.211511	NM_024549	HPRD:08636	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
19-PTNLD28-TUMOR_peak_68697	chr3	62587305	62587433	+	7.68917	NA	intron (NM_183393, intron 6 of 26)	intron (NM_183393, intron 6 of 26)	-228179	NM_018008	55079	Hs.241523	NM_018008	HPRD:07596	FEZF2	FEZ|FEZL|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_24152	chr12	50038469	50038559	+	7.68917	NA	TTS (NM_012272)	TTS (NM_012272)	21111	NM_012272	25766	Hs.706827	NM_012272	HPRD:11044	PRPF40B	HYPC	PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55112	chr2	114234529	114234629	+	7.68917	NA	intron (NM_172003, intron 10 of 14)	L1PA3|LINE|L1	-22082	NM_012184	200350	Hs.591554	NM_012184	HPRD:17010	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4-like 1	protein-coding
19-PTNLD28-TUMOR_peak_78719	chr5	3310855	3310985	+	7.68895	NA	Intergenic	Intergenic	132971	NR_104617	102467074	Hs.575250	NR_104617		LINC01377	-	long intergenic non-protein coding RNA 1377	ncRNA
19-PTNLD28-TUMOR_peak_91922	chr7	32931815	32931910	+	7.68895	NA	promoter-TSS (NM_015483)	promoter-TSS (NM_015483)	-394	NM_015483	25948	Hs.372541	NM_015483	HPRD:13756	KBTBD2	BKLHD1	kelch repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102002	chr9	3828658	3828811	+	7.68895	NA	intron (NM_001042413, intron 10 of 10)	intron (NM_001042413, intron 10 of 10)	-69912	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_79411	chr5	33892132	33892445	+	7.68895	NA	promoter-TSS (NM_030955)	promoter-TSS (NM_030955)	-164	NM_030955	81792	Hs.12680	NM_030955	HPRD:05862	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif, 12	protein-coding
19-PTNLD28-TUMOR_peak_84750	chr6	1713566	1713660	+	7.68895	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	102932	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_106744	chr9	139334214	139334429	+	7.68895	NA	promoter-TSS (NM_019892)	promoter-TSS (NM_019892)	-65	NM_019892	56623	Hs.120998	NM_019892	HPRD:17151	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV	inositol polyphosphate-5-phosphatase, 72 kDa	protein-coding
19-PTNLD28-TUMOR_peak_18307	chr11	45131059	45131231	+	7.68895	NA	intron (NR_046338, intron 2 of 7)	L3b|LINE|CR1	15581	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_97860	chr8	27693845	27694166	+	7.68895	NA	intron (NM_001278945, intron 1 of 7)	L2a|LINE|L2	1607	NM_018492	55872	Hs.104741	NM_018492	HPRD:17822	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
19-PTNLD28-TUMOR_peak_87683	chr6	44225203	44225495	+	7.68802	NA	promoter-TSS (NM_001286512)	promoter-TSS (NM_001286512)	-41	NM_001286509	347734	Hs.182885	NM_178148	HPRD:11576	SLC35B2	PAPST1|SLL|UGTrel4	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2	protein-coding
19-PTNLD28-TUMOR_peak_6762	chr1	151286796	151286906	+	7.68480	NA	intron (NM_002651, intron 3 of 12)	intron (NM_002651, intron 3 of 12)	13282	NM_001198775	5298	Hs.632465	NM_002651	HPRD:11805	PI4KB	NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase, catalytic, beta	protein-coding
19-PTNLD28-TUMOR_peak_46917	chr19	6590935	6591050	+	7.68390	NA	exon (NM_001252, exon 1 of 3)	exon (NM_001252, exon 1 of 3)	171	NM_001252	970	Hs.501497	NM_001252	HPRD:18515	CD70	CD27L|CD27LG|TNFSF7	CD70 molecule	protein-coding
19-PTNLD28-TUMOR_peak_83449	chr5	156315669	156315788	+	7.68390	NA	Intergenic	LTR69|LTR|ERVL	38179	NR_038443	153743	Hs.567727	NM_206858	ENSG00000231989	PPP1R2P3	-	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_89271	chr6	119121811	119121921	+	7.68390	NA	Intergenic	Intergenic	17995	NR_037662	100287632	Hs.334026	NR_037662		LOC100287632	-	selenoprotein K pseudogene	pseudo
19-PTNLD28-TUMOR_peak_85392	chr6	11999556	11999761	+	7.68390	NA	Intergenic	Intergenic	-13066	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_57415	chr2	190167440	190167564	+	7.68390	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-122897	NM_000393	1290	Hs.445827	NM_000393	HPRD:00366	COL5A2	-	collagen, type V, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_102079	chr9	5583335	5583428	+	7.68390	NA	Intergenic	Intergenic	-45738	NM_001135920	57589	Hs.211520	NM_020829	HPRD:13858	RIC1	CIP150|KIAA1432|bA207C16.1	RAB6A GEF complex partner 1	protein-coding
19-PTNLD28-TUMOR_peak_19761	chr11	70765898	70766049	+	7.68390	NA	intron (NM_012309, intron 7 of 22)	L1MA8|LINE|L1	-47500	NR_037437	100500844		NR_037437		MIR3664	-	microRNA 3664	ncRNA
19-PTNLD28-TUMOR_peak_67637	chr3	39919382	39919577	+	7.68390	NA	intron (NR_104316, intron 1 of 16)	L1PA3|LINE|L1	68328	NM_001284424	25924	Hs.594535	NM_015460	HPRD:14796	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_21378	chr11	116462001	116462220	+	7.68390	NA	Intergenic	Intergenic	181604	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_65303	chr22	36311719	36311846	+	7.68390	NA	intron (NM_001082579, intron 2 of 13)	intron (NM_001082579, intron 2 of 13)	-75152	NM_014309	23543	Hs.282998	NM_014309	HPRD:15231	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
19-PTNLD28-TUMOR_peak_44112	chr17	80464461	80464565	+	7.68390	NA	Intergenic	FRAM|SINE|Alu	-13081	NM_004514	3607	Hs.591140	NM_004514	HPRD:00982	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
19-PTNLD28-TUMOR_peak_69175	chr3	77717058	77717231	+	7.68390	NA	Intergenic	Intergenic	569981	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout, axon guidance receptor, homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_4428	chr1	77484607	77484787	+	7.68390	NA	intron (NM_030965, intron 2 of 4)	intron (NM_030965, intron 2 of 4)	-41131	NR_106978	102466995		NR_106978		MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
19-PTNLD28-TUMOR_peak_100236	chr8	118316441	118316575	+	7.68390	NA	Intergenic	Intergenic	169171	NM_001172814	169026	Hs.532270	NM_173851	HPRD:15370	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_23850	chr12	43124143	43124312	+	7.68390	NA	Intergenic	Intergenic	-83927	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_84508	chr5	179474793	179474937	+	7.68390	NA	intron (NM_001280801, intron 1 of 7)	intron (NM_001280801, intron 1 of 7)	24253	NM_001280801	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_18166	chr11	40612419	40612621	+	7.68390	NA	intron (NM_001258419, intron 3 of 6)	L1PA2|LINE|L1	-297840	NR_047673	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_71053	chr3	135701371	135701461	+	7.68390	NA	intron (NM_001190447, intron 1 of 12)	intron (NM_001190447, intron 1 of 12)	16901	NM_002718	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_19444	chr11	66764395	66764664	+	7.68390	NA	Intergenic	Intergenic	21775	NM_001136485	254439	Hs.232604	NM_001136485	ENSG00000173237	C11orf86	-	chromosome 11 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_11834	chr10	5734496	5734590	+	7.68390	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	7742	NM_017782	54906	Hs.610717	NM_017782	ENSG00000108021	FAM208B	C10orf18|bA318E3.2	family with sequence similarity 208, member B	protein-coding
19-PTNLD28-TUMOR_peak_3891	chr1	60442417	60442725	+	7.68390	NA	Intergenic	Intergenic	-50148	NM_000775	1573	Hs.152096	NM_000775	HPRD:03159	CYP2J2	CPJ2	cytochrome P450, family 2, subfamily J, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_69281	chr3	88919422	88919534	+	7.68390	NA	Intergenic	L1PA2|LINE|L1	-237196	NM_005233	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_71049	chr3	135637642	135637730	+	7.68390	NA	Intergenic	Intergenic	-46829	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_84136	chr5	173942108	173942309	+	7.68390	NA	intron (NR_125806, intron 2 of 5)	intron (NR_125806, intron 2 of 5)	178851	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_96296	chr7	150403782	150404055	+	7.68390	NA	Intergenic	L1PA3|LINE|L1	-9727	NM_130759	170575	Hs.647079	NM_130759	HPRD:16278	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
19-PTNLD28-TUMOR_peak_69484	chr3	101788096	101788450	+	7.68390	NA	Intergenic	L2b|LINE|L2	128570	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_22206	chr11	130642572	130642732	+	7.68390	NA	Intergenic	Intergenic	89353	NR_125383	100507431	Hs.375101	NR_125383		LOC100507431	-	uncharacterized LOC100507431	ncRNA
19-PTNLD28-TUMOR_peak_71728	chr3	150795973	150796064	+	7.68390	NA	intron (NR_024066, intron 5 of 5)	intron (NR_024066, intron 5 of 5)	-8658	NM_053002	116931	Hs.744234	NM_053002	HPRD:10278	MED12L	NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12-like	protein-coding
19-PTNLD28-TUMOR_peak_98359	chr8	40529848	40530063	+	7.68390	NA	intron (NM_001135731, intron 4 of 5)	intron (NM_001135731, intron 4 of 5)	225388	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_48273	chr19	23300022	23300261	+	7.68390	NA	intron (NM_001277403, intron 1 of 3)	CpG	364	NM_001277403	100129543	Hs.427120	NM_001277403	ENSG00000183850	ZNF730	-	zinc finger protein 730	protein-coding
19-PTNLD28-TUMOR_peak_46415	chr18	77440499	77440628	+	7.68181	NA	promoter-TSS (NM_001202504)	promoter-TSS (NM_001202504)	762	NM_048368	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_15249	chr10	102757619	102757744	+	7.67739	NA	intron (NM_032429, intron 1 of 4)	CpG	817	NM_032429	84445	Hs.523221	NM_032429	HPRD:14341	LZTS2	LAPSER1	leucine zipper, putative tumor suppressor 2	protein-coding
19-PTNLD28-TUMOR_peak_66355	chr3	7918602	7918976	+	7.67721	NA	Intergenic	Intergenic	139205	NR_110131	101927394	Hs.517767	NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
19-PTNLD28-TUMOR_peak_30371	chr14	54420248	54420378	+	7.67721	NA	intron (NM_130850, intron 1 of 3)	CpG	957	NM_130851	652	Hs.68879	NM_001202	HPRD:00207	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
19-PTNLD28-TUMOR_peak_97408	chr8	19171013	19171468	+	7.67716	NA	promoter-TSS (NM_001174159)	promoter-TSS (NM_001174159)	159	NM_001174160	63898	Hs.303208	NM_022071	HPRD:08340	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_102315	chr9	16704738	16704844	+	7.67716	NA	intron (NM_017637, intron 3 of 6)	intron (NM_017637, intron 3 of 6)	165995	NM_017637	54796	Hs.656581	NM_017637	HPRD:12274	BNC2	BSN2	basonuclin 2	protein-coding
19-PTNLD28-TUMOR_peak_67996	chr3	47822072	47822198	+	7.67716	NA	intron (NM_003074, intron 1 of 27)	L2a|LINE|L2	1270	NM_003074	6599	Hs.476179	NM_003074	HPRD:03435	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding
19-PTNLD28-TUMOR_peak_41282	chr17	37309261	37309358	+	7.67716	NA	Intergenic	Intergenic	-1407	NM_020405	57125	Hs.125036	NM_020405	HPRD:08439	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96323	chr7	150707519	150707910	+	7.67716	NA	exon (NM_000603, exon 22 of 27)	exon (NM_000603, exon 22 of 27)	13872	NR_073169	285973	Hs.707300	NM_173681	HPRD:08253	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
19-PTNLD28-TUMOR_peak_40324	chr17	16342850	16342985	+	7.67716	NA	promoter-TSS (NR_002744)	promoter-TSS (NR_002744)	94	NR_003043	692087		NR_003043		SNORD49B	U49B	small nucleolar RNA, C/D box 49B	snoRNA
19-PTNLD28-TUMOR_peak_78857	chr5	9952104	9952210	+	7.67564	NA	Intergenic	LTR43|LTR|ERV1	-48221	NR_027112	285692	Hs.651487	NR_027112	ENSG00000249781	LOC285692	-	uncharacterized LOC285692	ncRNA
19-PTNLD28-TUMOR_peak_106355	chr9	132175408	132175623	+	7.67564	NA	Intergenic	Intergenic	-75424	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA
19-PTNLD28-TUMOR_peak_77698	chr4	154388361	154388686	+	7.67564	NA	intron (NM_015196, intron 2 of 34)	CpG-20197	1025	NM_015196	23240	Hs.732450	NM_015196	HPRD:13823	KIAA0922	TMEM131L	KIAA0922	protein-coding
19-PTNLD28-TUMOR_peak_918	chr1	14076141	14076327	+	7.67564	NA	intron (NM_001135610, intron 6 of 7)	CpG	358	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_71228	chr3	139196444	139196827	+	7.67564	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	-1283	NM_004164	5948	Hs.655516	NM_004164	HPRD:07184	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2, cellular	protein-coding
19-PTNLD28-TUMOR_peak_54191	chr2	95717690	95717800	+	7.67362	NA	intron (NM_002371, intron 3 of 3)	intron (NM_002371, intron 3 of 3)	26345	NM_022438	4118	Hs.80395	NM_002371	HPRD:01789	MAL	-	mal, T-cell differentiation protein	protein-coding
19-PTNLD28-TUMOR_peak_38296	chr16	67197404	67197707	+	7.67141	NA	exon (NM_018378, exon 3 of 3)	exon (NM_018378, exon 3 of 3)	267	NM_001538	3299	Hs.512156	NM_001538	HPRD:03896	HSF4	CTM|CTRCT5	heat shock transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_48018	chr19	18266755	18266922	+	7.67141	NA	exon (NM_005027, exon 2 of 16)	exon (NM_005027, exon 2 of 16)	2850	NM_005027	5296	Hs.371344	NM_005027	HPRD:04404	PIK3R2	MPPH|P85B|p85|p85-BETA	phosphoinositide-3-kinase, regulatory subunit 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_26469	chr12	116865214	116865382	+	7.66971	NA	TTS (NR_039683)	TTS (NR_039683)	825	NR_039683	100616309		NR_039683	miRBase:MI0016824	MIR4472-2	-	microRNA 4472-2	ncRNA
19-PTNLD28-TUMOR_peak_105228	chr9	110514218	110514335	+	7.66971	NA	Intergenic	Intergenic	-262229	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_41773	chr17	43179558	43179690	+	7.66716	NA	intron (NM_021079, intron 8 of 11)	intron (NM_021079, intron 8 of 11)	12177	NR_106842	102465470		NR_106842		MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
19-PTNLD28-TUMOR_peak_104941	chr9	101397147	101397276	+	7.66668	NA	intron (NM_005458, intron 1 of 18)	L3|LINE|CR1	74268	NM_005458	9568	Hs.198612	NM_005458	HPRD:09552	GABBR2	GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_48984	chr19	39647296	39647549	+	7.66668	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	31002	NM_001014832	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_103030	chr9	38024107	38024525	+	7.66668	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	44894	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_358	chr1	6336426	6336679	+	7.66668	NA	intron (NM_181866, intron 8 of 8)	intron (NM_181866, intron 8 of 8)	-15517	NM_207370	387509	Hs.531581	NM_207370	HPRD:13600	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
19-PTNLD28-TUMOR_peak_29061	chr13	111024041	111024172	+	7.66668	NA	intron (NM_001846, intron 4 of 47)	intron (NM_001846, intron 4 of 47)	30801	NR_107040	102465872		NR_107040		MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
19-PTNLD28-TUMOR_peak_41295	chr17	37395996	37396112	+	7.66668	NA	Intergenic	Intergenic	-14014	NM_198993	342667	Hs.145068	NM_198993	HPRD:18113	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
19-PTNLD28-TUMOR_peak_58496	chr2	220282162	220282260	+	7.66668	NA	promoter-TSS (NM_001927)	promoter-TSS (NM_001927)	-888	NM_001927	1674	Hs.594952	NM_001927	HPRD:00514	DES	CSM1|CSM2|LGMD2R	desmin	protein-coding
19-PTNLD28-TUMOR_peak_60679	chr20	33526356	33526557	+	7.66668	NA	intron (NM_000178, intron 6 of 12)	intron (NM_000178, intron 6 of 12)	17145	NM_000178	2937	Hs.82327	NM_000178	HPRD:03000	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
19-PTNLD28-TUMOR_peak_85884	chr6	21679965	21680431	+	7.66668	NA	intron (NR_015410, intron 2 of 11)	AluJr|SINE|Alu	13523	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_81141	chr5	91181263	91181359	+	7.66668	NA	Intergenic	Intergenic	-502162	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_57568	chr2	194575093	194575181	+	7.66668	NA	Intergenic	L1PA3|LINE|L1	-633856	NR_110222	101927406	Hs.385793	NR_110222	ENSG00000225539	LOC101927406	-	uncharacterized LOC101927406	ncRNA
19-PTNLD28-TUMOR_peak_59296	chr2	242212271	242212452	+	7.66668	NA	promoter-TSS (NM_001243900)	promoter-TSS (NM_001243900)	-115	NM_001243900	3069	Hs.471851	NM_005336	HPRD:00813	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
19-PTNLD28-TUMOR_peak_51431	chr2	20252742	20252840	+	7.66622	NA	Intergenic	Intergenic	-1002	NM_014713	9741	Hs.467807	NM_014713	HPRD:13959	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
19-PTNLD28-TUMOR_peak_86411	chr6	29892645	29892758	+	7.66622	NA	non-coding (NR_001317, exon 1 of 1).7	non-coding (NR_001317, exon 1 of 1).7	2291	NR_001317	80868	Hs.661198	NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_13309	chr10	45869126	45869505	+	7.66546	NA	promoter-TSS (NM_000698)	promoter-TSS (NM_000698)	-309	NM_001256154	240	Hs.89499	NM_000698	HPRD:01065	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_93231	chr7	73386260	73386363	+	7.66546	NA	Intergenic	Intergenic	-55808	NM_001278914	2006	Hs.647061	NM_000501	HPRD:00556	ELN	SVAS|WBS|WS	elastin	protein-coding
19-PTNLD28-TUMOR_peak_47077	chr19	8640587	8640793	+	7.66546	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	1641	NM_012335	4542	Hs.465818	NM_012335	HPRD:03282	MYO1F	-	myosin IF	protein-coding
19-PTNLD28-TUMOR_peak_48873	chr19	38736582	38736761	+	7.66546	NA	Intergenic	AluJo|SINE|Alu	10560	NM_033256	94274	Hs.631569	NM_033256	HPRD:16291	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding
19-PTNLD28-TUMOR_peak_91611	chr7	23374873	23375125	+	7.66546	NA	intron (NM_006547, intron 10 of 14)	AluJb|SINE|Alu	36059	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_47780	chr19	16188903	16189007	+	7.65879	NA	intron (NM_003290, intron 1 of 7)	intron (NM_003290, intron 1 of 7)	1820	NM_003290	7171	Hs.631618	NM_003290	HPRD:11734	TPM4	HEL-S-108	tropomyosin 4	protein-coding
19-PTNLD28-TUMOR_peak_64693	chr22	23875655	23875790	+	7.65489	NA	Intergenic	Intergenic	-46555	NR_110539	388882	Hs.542766	NR_110539	HPRD:14207	LOC388882	-	uncharacterized LOC388882	ncRNA
19-PTNLD28-TUMOR_peak_16401	chr10	135227569	135227763	+	7.65489	NA	intron (NM_138384, intron 9 of 10)	SVA_D|Other|Other	10455	NM_001012508	503542	Hs.64968	NM_001012508	HPRD:18499	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein homolog (zebrafish)	protein-coding
19-PTNLD28-TUMOR_peak_5463	chr1	110693451	110693704	+	7.65489	NA	intron (NM_001010898, intron 1 of 11)	CpG	445	NM_001010898	388662	Hs.128382	NM_001010898	HPRD:18061	SLC6A17	NTT4	solute carrier family 6 (neutral amino acid transporter), member 17	protein-coding
19-PTNLD28-TUMOR_peak_62396	chr20	57726595	57726700	+	7.65489	NA	Intergenic	MIRb|SINE|MIR	-39428	NM_178457	128611	Hs.473204	NM_178457	ENSG00000124203	ZNF831	C20orf174|dJ492J12.1	zinc finger protein 831	protein-coding
19-PTNLD28-TUMOR_peak_92577	chr7	51461015	51461156	+	7.65489	NA	Intergenic	Intergenic	-76570	NM_001287436	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_40522	chr17	19045885	19045973	+	7.65390	NA	intron (NM_001129778, intron 3 of 3)	intron (NM_001129778, intron 3 of 3)	15147	NM_001129778	400581	Hs.661470	NM_001129778		GRAPL	-	GRB2-related adaptor protein-like	protein-coding
19-PTNLD28-TUMOR_peak_60878	chr20	36012721	36012868	+	7.65390	NA	exon (NM_198291, exon 4 of 14)	exon (NM_198291, exon 4 of 14)	38263	NM_198291	6714	Hs.195659	NM_005417	HPRD:01819	SRC	ASV|SRC1|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_43054	chr17	65373927	65374170	+	7.65390	NA	5' UTR (NM_012417, exon 1 of 9)	5' UTR (NM_012417, exon 1 of 9)	651	NM_012417	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_18804	chr11	60673236	60673364	+	7.65390	NA	intron (NM_014502, intron 1 of 15)	intron (NM_014502, intron 1 of 15)	761	NM_014502	27339	Hs.502705	NM_014502	HPRD:12214	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
19-PTNLD28-TUMOR_peak_37083	chr16	28962436	28962526	+	7.65357	NA	exon (NM_032815, exon 1 of 8)	exon (NM_032815, exon 1 of 8)	163	NM_032815	84901	Hs.513470	NM_032815	HPRD:10971	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_47880	chr19	17356970	17357151	+	7.65352	NA	promoter-TSS (NM_005234)	promoter-TSS (NM_005234)	-909	NM_005234	2063	Hs.466148	NM_005234	HPRD:00583	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2, group F, member 6	protein-coding
19-PTNLD28-TUMOR_peak_9255	chr1	201680963	201681206	+	7.65311	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-7552	NR_049823	100847050		NR_049823		MIR5191	-	microRNA 5191	ncRNA
19-PTNLD28-TUMOR_peak_60519	chr20	31319000	31319130	+	7.65039	NA	intron (NM_053041, intron 1 of 8)	AluJr4|SINE|Alu	12749	NM_001099339	149951	Hs.408427	NM_053041	HPRD:13085	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_76220	chr4	89360610	89360739	+	7.65039	NA	intron (NM_017912, intron 20 of 22)	L2a|LINE|L2	-17594	NM_016323	51191	Hs.26663	NM_016323	HPRD:10502	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
19-PTNLD28-TUMOR_peak_44070	chr17	80196793	80196915	+	7.64862	NA	3' UTR (NM_001042423, exon 5 of 5)	3' UTR (NM_001042423, exon 5 of 5)	2310	NR_106845	102465472		NR_106845		MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
19-PTNLD28-TUMOR_peak_29888	chr14	35450623	35450788	+	7.64827	NA	Intergenic	MER57B1|LTR|ERV1	-1399	NM_003136	6729	Hs.167535	NM_003136	HPRD:05330	SRP54	-	signal recognition particle 54kDa	protein-coding
19-PTNLD28-TUMOR_peak_29434	chr14	22896805	22896902	+	7.64827	NA	Intergenic	Intergenic	161290	NM_001344	1603	Hs.82890	NM_001344	HPRD:02589	DAD1	OST2	defender against cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_61780	chr20	48861102	48861309	+	7.64817	NA	Intergenic	Intergenic	-22818	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding
19-PTNLD28-TUMOR_peak_60590	chr20	32282246	32282399	+	7.64687	NA	Intergenic	L2a|LINE|L2	-8112	NM_005225	1869	Hs.654393	NM_005225	HPRD:01806	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_66006	chr22	46843360	46843467	+	7.64687	NA	intron (NM_014246, intron 2 of 34)	intron (NM_014246, intron 2 of 34)	89654	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_89387	chr6	126279161	126279270	+	7.64687	NA	intron (NM_138571, intron 1 of 4)	L2c|LINE|L2	1354	NM_138571	135114	Hs.72325	NM_138571	HPRD:17107	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_81736	chr5	118734867	118735061	+	7.64687	NA	Intergenic	Intergenic	43449	NM_014350	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_84443	chr5	178322616	178322717	+	7.64687	NA	promoter-TSS (NM_030613)	promoter-TSS (NM_030613)	-250	NM_030613	80108	Hs.654533	NM_030613	HPRD:08639	ZFP2	ZNF751	ZFP2 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_1301	chr1	21112859	21113454	+	7.64687	NA	promoter-TSS (NM_016287)	promoter-TSS (NM_016287)	25	NM_016287	50809	Hs.142442	NM_016287	HPRD:11026	HP1BP3	HP1-BP74	heterochromatin protein 1, binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_19584	chr11	68082416	68082534	+	7.64687	NA	intron (NM_001291902, intron 1 of 22)	intron (NM_001291902, intron 1 of 22)	2398	NM_002335	4041	Hs.6347	NM_002335	HPRD:04616	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_44181	chr17_gl000206_random	31953	32078	+	7.64687	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_42235	chr17	48473675	48473918	+	7.64599	NA	intron (NM_018509, intron 1 of 6)	intron (NM_018509, intron 1 of 6)	1118	NM_018509	55379	Hs.370927	NM_018509	HPRD:15181	LRRC59	p34	leucine rich repeat containing 59	protein-coding
19-PTNLD28-TUMOR_peak_11304	chr1	241769954	241770076	+	7.64533	NA	intron (NM_014322, intron 1 of 3)	intron (NM_014322, intron 1 of 3)	29217	NM_001821	1122	Hs.654545	NM_001821	HPRD:00341	CHML	REP2	choroideremia-like (Rab escort protein 2)	protein-coding
19-PTNLD28-TUMOR_peak_92015	chr7	36087782	36087972	+	7.64533	NA	Intergenic	Intergenic	-47043	NR_108089	101928618	Hs.561704	NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
19-PTNLD28-TUMOR_peak_77364	chr4	143329182	143329318	+	7.64533	NA	intron (NM_001101669, intron 5 of 25)	intron (NM_001101669, intron 5 of 25)	438354	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_15519	chr10	106909252	106909472	+	7.64533	NA	intron (NM_014978, intron 9 of 26)	intron (NM_014978, intron 9 of 26)	-483388	NR_104028	100505890	Hs.348526	NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46523	chr19	903590	903745	+	7.64533	NA	intron (NM_138774, intron 1 of 7)	AluJo|SINE|Alu	9558	NM_138774	91300	Hs.557655	NM_138774	HPRD:16625	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_58173	chr2	211367896	211368016	+	7.64533	NA	intron (NM_001122633, intron 1 of 38)	intron (NM_001122633, intron 1 of 38)	25550	NM_001122633	1373	Hs.149252	NM_001875	HPRD:01995	CPS1	CPSASE1|PHN	carbamoyl-phosphate synthase 1, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_57824	chr2	202298366	202298462	+	7.64533	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	17905	NM_015049	66008	Hs.152774	NM_015049	HPRD:09547	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking protein, kinesin binding 2	protein-coding
19-PTNLD28-TUMOR_peak_51118	chr2	11059277	11059373	+	7.64533	NA	Intergenic	Intergenic	7262	NM_002236	3754	Hs.23735	NM_002236	HPRD:04808	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
19-PTNLD28-TUMOR_peak_96956	chr8	7097477	7097597	+	7.64533	NA	Intergenic	Intergenic	23477	NR_027000	349196	Hs.559040	NM_001025473		LINC00965	-	long intergenic non-protein coding RNA 965	ncRNA
19-PTNLD28-TUMOR_peak_75327	chr4	54408147	54408287	+	7.64533	NA	intron (NM_001126328, intron 2 of 10)	intron (NM_001126328, intron 2 of 10)	16219	NM_032622	84708	Hs.518760	NM_032622	HPRD:17287	LNX1	LNX|MPDZ|PDZRN2	ligand of numb-protein X 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_70215	chr3	123194166	123194351	+	7.64533	NA	Intergenic	L2b|LINE|L2	-26866	NM_183357	111	Hs.593292	NM_183357	HPRD:08973	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
19-PTNLD28-TUMOR_peak_65698	chr22	41993293	41993562	+	7.64533	NA	TTS (NM_015704)	TTS (NM_015704)	-7556	NM_002676	5372	Hs.75835	NM_002676	HPRD:03473	PMM1	Sec53	phosphomannomutase 1	protein-coding
19-PTNLD28-TUMOR_peak_13698	chr10	57359156	57359244	+	7.64533	NA	5' UTR (NM_001190478, exon 1 of 1)	5' UTR (NM_001190478, exon 1 of 1)	450	NM_001190478	100463289	Hs.727204	NM_001190478	ENSG00000249860	MTRNR2L5	HN5	MT-RNR2-like 5	protein-coding
19-PTNLD28-TUMOR_peak_96897	chr8	2585302	2585456	+	7.64533	NA	intron (NR_125426, intron 1 of 2)	LTR12E|LTR|ERV1	612	NR_125426	101927815	Hs.571467	NR_125423	ENSG00000249694	LOC101927815	-	uncharacterized LOC101927815	ncRNA
19-PTNLD28-TUMOR_peak_108913	chrX	92690476	92690564	+	7.64533	NA	Intergenic	HERVE-int|LTR|ERV1	238162	NM_004538	4675	Hs.21365	NM_004538	HPRD:02123	NAP1L3	MB20|NPL3	nucleosome assembly protein 1-like 3	protein-coding
19-PTNLD28-TUMOR_peak_43803	chr17	77014235	77014386	+	7.64533	NA	TTS (NR_040018)	TTS (NR_040018)	-4706	NM_153372	114897	Hs.201398	NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and tumor necrosis factor related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_36900	chr16	24298115	24298609	+	7.64533	NA	intron (NM_006539, intron 1 of 3)	intron (NM_006539, intron 1 of 3)	31488	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_58072	chr2	208273282	208273500	+	7.63791	NA	Intergenic	Intergenic	-121225	NM_134442	1385	Hs.516646	NM_004379	HPRD:00442	CREB1	CREB	cAMP responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10158	chr1	221052892	221053237	+	7.63791	NA	5' UTR (NM_021958, exon 1 of 4)	5' UTR (NM_021958, exon 1 of 4)	321	NM_021958	3142	Hs.74870	NM_021958		HLX	HB24|HLX1	H2.0-like homeobox	protein-coding
19-PTNLD28-TUMOR_peak_82578	chr5	139291135	139291262	+	7.63791	NA	intron (NM_001184935, intron 1 of 7)	intron (NM_001184935, intron 1 of 7)	115792	NM_032289	84249	Hs.21963	NM_032289	HPRD:15190	PSD2	-	pleckstrin and Sec7 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_20421	chr11	85955457	85955920	+	7.63791	NA	promoter-TSS (NM_003797)	promoter-TSS (NM_003797)	-118	NM_152991	8726	Hs.503510	NM_003797	HPRD:09343	EED	HEED|WAIT1	embryonic ectoderm development	protein-coding
19-PTNLD28-TUMOR_peak_83013	chr5	146834973	146835127	+	7.63697	NA	intron (NM_001197294, intron 1 of 13)	intron (NM_001197294, intron 1 of 13)	-1790	NM_001387	1809	Hs.519659	NM_001387	HPRD:03104	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_96459	chr7	152130846	152130948	+	7.63363	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	2193	NM_170606	58508	Hs.647120	NM_021230	HPRD:06016	KMT2C	HALR|MLL3	lysine (K)-specific methyltransferase 2C	protein-coding
19-PTNLD28-TUMOR_peak_73774	chr4	787802	788005	+	7.63363	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	-12267	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	ncRNA
19-PTNLD28-TUMOR_peak_50404	chr19	56092551	56092689	+	7.63363	NA	promoter-TSS (NM_152600)	promoter-TSS (NM_152600)	-409	NM_152600	163033	Hs.112529	NM_152600	HPRD:11730	ZNF579	-	zinc finger protein 579	protein-coding
19-PTNLD28-TUMOR_peak_45732	chr18	47875774	47875933	+	7.63219	NA	Intergenic	L1HS|LINE|L1	-25539	NM_145060	220134	Hs.134726	NM_145060	HPRD:12689	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_12865	chr10	33654828	33655116	+	7.63219	NA	Intergenic	LTR26|LTR|ERV1	-31139	NM_001244973	8829	Hs.131704	NM_003873	HPRD:03642	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
19-PTNLD28-TUMOR_peak_77753	chr4	156314056	156314234	+	7.63219	NA	Intergenic	Intergenic	-16023	NM_001039580	79884	Hs.61271	NM_001039580	HPRD:07957	MAP9	ASAP	microtubule-associated protein 9	protein-coding
19-PTNLD28-TUMOR_peak_4733	chr1	89197156	89197489	+	7.63219	NA	intron (NM_006256, intron 1 of 21)	MIR3|SINE|MIR	-46435	NR_110682	101927891	Hs.637231	NR_110682	ENSG00000237505	PKN2-AS1	-	PKN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72544	chr3	178250355	178250561	+	7.63219	NA	Intergenic	Intergenic	-3628	NM_181361	10242	Hs.478368	NM_005832	HPRD:05557	KCNMB2	-	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_63488	chr21	39286590	39286790	+	7.63219	NA	intron (NM_002240, intron 1 of 3)	intron (NM_002240, intron 1 of 3)	2051	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_91951	chr7	33773535	33773762	+	7.63219	NA	Intergenic	Intergenic	-170875	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_27826	chr13	36049640	36049915	+	7.63219	NA	exon (NM_005584, exon 1 of 1)	exon (NM_005584, exon 1 of 1)	1055	NM_005584	4081	Hs.584776	NM_005584	HPRD:03178	MAB21L1	CAGR1	mab-21-like 1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_69919	chr3	114238375	114238598	+	7.63219	NA	intron (NR_121661, intron 2 of 2)	intron (NR_121661, intron 2 of 2)	66046	NR_121661	101929754	Hs.614195	NR_121661		LOC101929754	-	uncharacterized LOC101929754	ncRNA
19-PTNLD28-TUMOR_peak_78244	chr4	184403635	184403723	+	7.63219	NA	Intergenic	LTR12C|LTR|ERV1	21989	NR_033995	389247	Hs.385787	NR_033995		LOC389247	-	uncharacterized LOC389247	ncRNA
19-PTNLD28-TUMOR_peak_5837	chr1	117253970	117254077	+	7.63219	NA	Intergenic	MLT2B3|LTR|ERVL	17289	NM_001013643	388667	Hs.127851	NM_001013643	HPRD:18385	C1orf137	-	chromosome 1 open reading frame 137	protein-coding
19-PTNLD28-TUMOR_peak_13813	chr10	62570706	62570824	+	7.63219	NA	Intergenic	Intergenic	32553	NM_033379	983	Hs.732435	NM_001786	HPRD:00302	CDK1	CDC2|CDC28A|P34CDC2	cyclin-dependent kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_45761	chr18	48396590	48396799	+	7.63219	NA	Intergenic	AluJb|SINE|Alu	-8738	NM_001168335	4200	Hs.233119	NM_002396		ME2	ODS1	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_72999	chr3	186969426	186969520	+	7.63219	NA	non-coding (NR_033519, exon 6 of 10)	non-coding (NR_033519, exon 6 of 10)	40337	NM_001879	5648	Hs.89983	NM_001879	HPRD:02749	MASP1	3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF	mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)	protein-coding
19-PTNLD28-TUMOR_peak_11216	chr1	238415775	238415890	+	7.63219	NA	Intergenic	LTR55|LTR|ERV	233485	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_32999	chr15	34354265	34354373	+	7.63219	NA	intron (NM_012125, intron 2 of 2)	intron (NM_012125, intron 2 of 2)	-23016	NM_020371	57099	Hs.555966	NM_020371	HPRD:05588	AVEN	PDCD12	apoptosis, caspase activation inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_53545	chr2	74585142	74585263	+	7.63219	NA	Intergenic	Intergenic	-14668	NM_133478	57835	Hs.594099	NM_021196	HPRD:08420	SLC4A5	NBC4	solute carrier family 4 (sodium bicarbonate cotransporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_65833	chr22	44226285	44226386	+	7.63219	NA	intron (NM_014351, intron 5 of 6)	intron (NM_014351, intron 5 of 6)	-18118	NM_198856	64800	Hs.658996	NM_022785	HPRD:13391	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
19-PTNLD28-TUMOR_peak_16040	chr10	124036499	124036621	+	7.63219	NA	intron (NM_144587, intron 3 of 15)	intron (NM_144587, intron 3 of 15)	5739	NM_144587	118663	Hs.422466	NM_144587	HPRD:12594	BTBD16	C10orf87	BTB (POZ) domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_27948	chr13	41215356	41215470	+	7.63219	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	25321	NM_002015	2308	Hs.370666	NM_002015	HPRD:00645	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
19-PTNLD28-TUMOR_peak_34774	chr15	80748094	80748364	+	7.63219	NA	intron (NM_014862, intron 2 of 18)	intron (NM_014862, intron 2 of 18)	51537	NM_014862	9915	Hs.459070	NM_014862	ENSG00000172379	ARNT2	WEDAS|bHLHe1	aryl-hydrocarbon receptor nuclear translocator 2	protein-coding
19-PTNLD28-TUMOR_peak_20405	chr11	85673121	85673252	+	7.63219	NA	intron (NM_001008660, intron 19 of 19)	intron (NM_001008660, intron 19 of 19)	106953	NM_001008660	8301	Hs.163893	NM_007166	HPRD:04320	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
19-PTNLD28-TUMOR_peak_109142	chrX	109041031	109041138	+	7.63219	NA	Intergenic	Intergenic	-64463	NM_004458	2182	Hs.268785	NM_004458	HPRD:02152	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68	acyl-CoA synthetase long-chain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_61202	chr20	42554549	42554644	+	7.63219	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	9814	NM_001098796	84969	Hs.26608	NM_032883	HPRD:12734	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
19-PTNLD28-TUMOR_peak_98989	chr8	63999015	63999118	+	7.63219	NA	promoter-TSS (NM_000370)	promoter-TSS (NM_000370)	-454	NM_000370	7274	Hs.69049	NM_000370	HPRD:02685	TTPA	ATTP|AVED|TTP1|alphaTTP	tocopherol (alpha) transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_49002	chr19	39893505	39893712	+	7.63112	NA	Intergenic	CpG	-3879	NM_003407	7538	Hs.534052	NM_003407	HPRD:01835	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
19-PTNLD28-TUMOR_peak_11069	chr1	235268515	235268860	+	7.63109	NA	Intergenic	Intergenic	22565	NR_002956	677802	Hs.744743	NR_002956		SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
19-PTNLD28-TUMOR_peak_58387	chr2	218853609	218853856	+	7.63109	NA	Intergenic	Intergenic	-44936	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_87458	chr6	41862279	41862423	+	7.63109	NA	intron (NM_018561, intron 1 of 6)	intron (NM_018561, intron 1 of 6)	748	NM_018561	25862	Hs.593575	NM_018561	HPRD:10075	USP49	-	ubiquitin specific peptidase 49	protein-coding
19-PTNLD28-TUMOR_peak_16005	chr10	123286391	123286621	+	7.63109	NA	intron (NR_073009, intron 4 of 16)	intron (NR_073009, intron 4 of 16)	66975	NM_001144913	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_21637	chr11	120175398	120175500	+	7.63109	NA	intron (NM_014352, intron 6 of 12)	intron (NM_014352, intron 6 of 12)	-20389	NM_174926	219902	Hs.643516	NM_174926	HPRD:14461	TMEM136	-	transmembrane protein 136	protein-coding
19-PTNLD28-TUMOR_peak_94589	chr7	102984790	102984902	+	7.63109	NA	intron (NM_001129887, intron 1 of 14)	intron (NM_001129887, intron 1 of 14)	474	NM_014377	27000	Hs.558476	NM_014377	ENSG00000105821	DNAJC2	MPHOSPH11|MPP11|ZRF1|ZUO1	DnaJ (Hsp40) homolog, subfamily C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_29480	chr14	23447506	23447627	+	7.63043	NA	TTS (NM_001289097)	TTS (NM_001289097)	-1134	NM_198086	84962	Hs.655832	NM_032876	HPRD:16426	AJUBA	JUB	ajuba LIM protein	protein-coding
19-PTNLD28-TUMOR_peak_46092	chr18	60383343	60383524	+	7.63043	NA	exon (NM_194449, exon 1 of 17)	exon (NM_194449, exon 1 of 17)	761	NM_194449	23239	Hs.465337	NM_194449	HPRD:15145	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_35987	chr16	4367366	4367455	+	7.62898	NA	Intergenic	Intergenic	10931	NR_110901	101926896	Hs.670300	NR_110901		LOC101926896	-	uncharacterized LOC101926896	ncRNA
19-PTNLD28-TUMOR_peak_41293	chr17	37392018	37392157	+	7.62866	NA	Intergenic	Intergenic	-10047	NM_198993	342667	Hs.145068	NM_198993	HPRD:18113	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
19-PTNLD28-TUMOR_peak_45250	chr18	34214880	34215147	+	7.62866	NA	intron (NM_001281739, intron 10 of 23)	intron (NM_001281739, intron 10 of 23)	-194067	NM_020776	57536	Hs.4045	NM_020776	HPRD:17211	KIAA1328	-	KIAA1328	protein-coding
19-PTNLD28-TUMOR_peak_30658	chr14	61937292	61937516	+	7.62866	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	99508	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_85139	chr6	7148785	7148912	+	7.62866	NA	intron (NM_001003698, intron 1 of 11)	Tigger15a|DNA|TcMar-Tigger	40762	NM_001003699	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_93803	chr7	87161340	87161517	+	7.62866	NA	intron (NM_000927, intron 21 of 28)	intron (NM_000927, intron 21 of 28)	-56409	NM_018850	5244	Hs.654403	NM_000443	HPRD:01371	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_13509	chr10	49742526	49742677	+	7.62866	NA	intron (NR_045675, intron 4 of 10)	intron (NR_045675, intron 4 of 10)	-40909	NM_001256026	58504	Hs.655672	NM_021226	HPRD:12476	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
19-PTNLD28-TUMOR_peak_51224	chr2	12862285	12862500	+	7.62730	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	5394	NM_021643	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_308	chr1	3817908	3818020	+	7.62730	NA	intron (NR_024455, intron 1 of 3)	CpG	996	NR_024455	100133612	Hs.307652	NR_024455	ENSG00000236423	LINC01134	-	long intergenic non-protein coding RNA 1134	ncRNA
19-PTNLD28-TUMOR_peak_17922	chr11	33723584	33723682	+	7.62684	NA	TTS (NM_001127223)	TTS (NM_001127223)	-1347	NM_001166692	100131378	Hs.709466	NM_001166692		C11orf91	-	chromosome 11 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_90680	chr6	170862291	170862489	+	7.62575	NA	promoter-TSS (NM_002793)	promoter-TSS (NM_002793)	27	NM_002793	5689	Hs.352768	NM_002793	HPRD:03603	PSMB1	HC5|PMSB1|PSC5	proteasome (prosome, macropain) subunit, beta type, 1	protein-coding
19-PTNLD28-TUMOR_peak_33938	chr15	63796431	63796769	+	7.62575	NA	promoter-TSS (NR_046341)	promoter-TSS (NR_046341)	-110	NR_046341	9960	Hs.458499	NM_006537		USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_93272	chr7	73702979	73703245	+	7.62575	NA	promoter-TSS (NM_032421)	promoter-TSS (NM_032421)	-693	NM_032421	7461	Hs.647018	NM_003388	HPRD:09140	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-GLY domain containing linker protein 2	protein-coding
19-PTNLD28-TUMOR_peak_62218	chr20	55435105	55435239	+	7.62575	NA	Intergenic	Intergenic	230814	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_84702	chr6	1182344	1182492	+	7.62150	NA	Intergenic	Intergenic	-80851	NR_027115	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
19-PTNLD28-TUMOR_peak_66051	chr22	47588038	47588279	+	7.62150	NA	Intergenic	Intergenic	-276220	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39939	chr17	6926940	6927164	+	7.62150	NA	exon (NM_181844, exon 2 of 9)	exon (NM_181844, exon 2 of 9)	683	NM_181844	255877	Hs.22575	NM_181844	HPRD:16414	BCL6B	BAZF|ZBTB28|ZNF62	B-cell CLL/lymphoma 6, member B	protein-coding
19-PTNLD28-TUMOR_peak_36366	chr16	12706594	12706708	+	7.62150	NA	Intergenic	LTR10A|LTR|ERV1	-107527	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_32853	chr15	31390813	31391002	+	7.62150	NA	intron (NM_001252024, intron 1 of 27)	intron (NM_001252024, intron 1 of 27)	3022	NM_001252030	4308	Hs.155942	NM_002420	HPRD:04656	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_61028	chr20	38119013	38119202	+	7.61688	NA	Intergenic	L2|LINE|L2	-265716	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_49628	chr19	48170689	48171116	+	7.61688	NA	intron (NM_015711, intron 1 of 14)	intron (NM_015711, intron 1 of 14)	-45699	NM_014601	30846	Hs.744963	NM_014601	HPRD:10434	EHD2	PAST2	EH-domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_70696	chr3	129034935	129035199	+	7.61403	NA	promoter-TSS (NM_006026)	promoter-TSS (NM_006026)	-47	NR_026991	339942	Hs.450096	NM_001025468		H1FX-AS1	C3orf47	H1FX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_38886	chr16	79632792	79632982	+	7.61337	NA	exon (NM_005360, exon 1 of 2)	exon (NM_005360, exon 1 of 2)	1735	NM_005360	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_77973	chr4	169402480	169402568	+	7.61073	NA	promoter-TSS (NM_001012967)	promoter-TSS (NM_001012967)	-859	NM_001012967	91351	Hs.535011	NM_001012967	ENSG00000181381	DDX60L	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	protein-coding
19-PTNLD28-TUMOR_peak_47079	chr19	8645752	8645966	+	7.61073	NA	exon (NM_030957, exon 26 of 26)	exon (NM_030957, exon 26 of 26)	-3528	NM_012335	4542	Hs.465818	NM_012335	HPRD:03282	MYO1F	-	myosin IF	protein-coding
19-PTNLD28-TUMOR_peak_64015	chr21	46494015	46494365	+	7.61073	NA	promoter-TSS (NM_015833)	promoter-TSS (NM_015833)	-303	NR_027672	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_12730	chr10	30657109	30657245	+	7.61073	NA	TTS (NR_106985)	TTS (NR_106985)	417	NR_106985	102466227		NR_106985		MIR7162	hsa-mir-7162	microRNA 7162	ncRNA
19-PTNLD28-TUMOR_peak_70973	chr3	134032718	134032888	+	7.61061	NA	Intergenic	Intergenic	53901	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
19-PTNLD28-TUMOR_peak_7213	chr1	155533322	155533425	+	7.61060	NA	non-coding (NR_027023, exon 1 of 1)	non-coding (NR_027023, exon 1 of 1)	-1049	NM_018489	55870	Hs.491060	NM_018489	HPRD:06416	ASH1L	ASH1|ASH1L1|KMT2H	ash1 (absent, small, or homeotic)-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_82621	chr5	139703789	139703893	+	7.61046	NA	Intergenic	L2c|LINE|L2	-21152	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_9383	chr1	203008589	203008694	+	7.61046	NA	Intergenic	Intergenic	-11670	NM_015053	8497	Hs.153648	NM_015053	HPRD:16012	PPFIA4	-	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding
19-PTNLD28-TUMOR_peak_64557	chr22	21848219	21848339	+	7.60815	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	23501	NR_003700	375133	Hs.448225	NR_003700	HPRD:14194	PI4KAP2	-	phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_73886	chr4	2074091	2074210	+	7.60815	NA	intron (NM_181808, intron 23 of 23)	(CA)n|Simple_repeat|Simple_repeat	12911	NM_178557	339983	Hs.318529	NM_178557	HPRD:08224	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8-like (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_13417	chr10	47758527	47758819	+	7.60588	NA	intron (NM_001098845, intron 9 of 11)	intron (NM_001098845, intron 9 of 11)	11823	NM_001098845	728113	Hs.705389	NM_001630	ENSG00000150165	ANXA8L1	ANXA8|ANXA8L2|VAC-beta|bA145E20.2	annexin A8-like 1	protein-coding
19-PTNLD28-TUMOR_peak_46569	chr19	1244556	1244671	+	7.60398	NA	3' UTR (NM_001687, exon 4 of 4)	3' UTR (NM_001687, exon 4 of 4)	2864	NM_001687	513	Hs.418668	NM_001687	HPRD:04397	ATP5D	-	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding
19-PTNLD28-TUMOR_peak_35504	chr15	101262565	101262697	+	7.60398	NA	Intergenic	Intergenic	119876	NM_198243	140460	Hs.31845	NM_024708	HPRD:10674	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
19-PTNLD28-TUMOR_peak_61425	chr20	44977301	44977389	+	7.60398	NA	TTS (NM_015945)	TTS (NM_015945)	15752	NM_015945	51006	Hs.593344	NM_015945	HPRD:15371	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 (GDP-fucose transporter), member C2	protein-coding
19-PTNLD28-TUMOR_peak_30953	chr14	69013654	69013795	+	7.60395	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	246907	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_29294	chr14	20222448	20222615	+	7.60153	NA	Intergenic	Intergenic	6944	NM_172194	441669	Hs.553828	NM_172194	HPRD:17732	OR4Q3	C14orf13|HSA6|OR14-3|OR4Q4|c14_5008	olfactory receptor, family 4, subfamily Q, member 3	protein-coding
19-PTNLD28-TUMOR_peak_93544	chr7	76899131	76899567	+	7.60153	NA	intron (NM_020879, intron 9 of 18)	intron (NM_020879, intron 9 of 18)	-70199	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_27774	chr13	33850208	33850351	+	7.60153	NA	intron (NM_001243476, intron 5 of 17)	intron (NM_001243476, intron 5 of 17)	-1412	NR_046693	100874241	Hs.662433	NR_046693	ENSG00000236581	STARD13-AS	STARD13-AS2	STARD13 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_110112	chrY	2466531	2466742	+	7.60153	NA	Intergenic	AluJo|SINE|Alu	-10596	NR_106737	102464837		NR_106737		MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
19-PTNLD28-TUMOR_peak_43227	chr17	70575994	70576082	+	7.60153	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	12905	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_96493	chr7	152591616	152591712	+	7.60153	NA	Intergenic	CpG	134830	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_22684	chr12	5979482	5979697	+	7.60153	NA	intron (NM_001278596, intron 3 of 25)	MIR3|SINE|MIR	74836	NM_001278596	57101	Hs.148970	NM_020373	HPRD:11634	ANO2	C12orf3|TMEM16B	anoctamin 2, calcium activated chloride channel	protein-coding
19-PTNLD28-TUMOR_peak_41663	chr17	41910528	41910693	+	7.60153	NA	promoter-TSS (NM_001932)	promoter-TSS (NM_001932)	-63	NR_003562	4356	Hs.396566	NM_001932	HPRD:03069	MPP3	DLG3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	protein-coding
19-PTNLD28-TUMOR_peak_14840	chr10	91152918	91153064	+	7.60153	NA	5' UTR (NM_001270930, exon 2 of 3)	5' UTR (NM_001270930, exon 2 of 3)	688	NM_001270927	3434	Hs.20315	NM_001548		IFIT1	C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561	interferon-induced protein with tetratricopeptide repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_82766	chr5	141201126	141201245	+	7.60153	NA	Intergenic	Intergenic	44582	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_30017	chr14	40058930	40059045	+	7.60153	NA	Intergenic	L1PA3|LINE|L1	-157283	NM_203301	254170	Hs.146632	NM_203301		FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
19-PTNLD28-TUMOR_peak_107376	chrX	2516531	2516742	+	7.60153	NA	Intergenic	AluJo|SINE|Alu	-10596	NR_106737	102464837		NR_106737		MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
19-PTNLD28-TUMOR_peak_19900	chr11	72575921	72576253	+	7.60153	NA	intron (NM_014824, intron 13 of 19)	intron (NM_014824, intron 13 of 19)	50636	NM_033388	89849	Hs.653186	NM_033388	HPRD:10959	ATG16L2	ATG16B|WDR80	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75412	chr4	57081452	57081583	+	7.60153	NA	intron (NM_020722, intron 2 of 10)	MLT1A0|LTR|ERVL-MaLR	45156	NM_020722	57482	Hs.596667	NM_020722		KIAA1211	-	KIAA1211	protein-coding
19-PTNLD28-TUMOR_peak_55484	chr2	123149056	123149253	+	7.60153	NA	Intergenic	Intergenic	636033	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_47162	chr19	10044900	10045024	+	7.60153	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	2108	NM_058164	93145	Hs.169743	NM_058164	HPRD:10127	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
19-PTNLD28-TUMOR_peak_905	chr1	13856925	13857040	+	7.60153	NA	Intergenic	AluY|SINE|Alu	-16740	NM_001010847	126755	Hs.657356	NM_001010847	ENSG00000162494	LRRC38	-	leucine rich repeat containing 38	protein-coding
19-PTNLD28-TUMOR_peak_21523	chr11	118760683	118760893	+	7.60153	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	-3313	NM_032966	643	Hs.113916	NM_001716		CXCR5	BLR1|CD185|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_82719	chr5	140849587	140849722	+	7.60153	NA	intron (NM_003735, intron 1 of 3)	AluSx|SINE|Alu	-5915	NM_002588	5098	Hs.368160	NM_002588	HPRD:04693	PCDHGC3	PC43|PCDH-GAMMA-C3|PCDH2	protocadherin gamma subfamily C, 3	protein-coding
19-PTNLD28-TUMOR_peak_33603	chr15	52530965	52531121	+	7.60153	NA	intron (NM_018728, intron 21 of 40)	AluY|SINE|Alu	38354	NR_031670	100302202		NR_031670		MIR1266	MIRN1266|hsa-mir-1266	microRNA 1266	ncRNA
19-PTNLD28-TUMOR_peak_63242	chr21	34747028	34747196	+	7.60153	NA	Intergenic	MIR|SINE|MIR	-28090	NM_005534	3460	Hs.634632	NM_005534	HPRD:00956	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
19-PTNLD28-TUMOR_peak_34057	chr15	66365695	66365791	+	7.60153	NA	intron (NM_032445, intron 5 of 22)	intron (NM_032445, intron 5 of 22)	33172	NR_036196	100422905		NR_036196	miRBase:MI0015841	MIR4311	-	microRNA 4311	ncRNA
19-PTNLD28-TUMOR_peak_96188	chr7	148858461	148858627	+	7.60153	NA	intron (NM_020781, intron 3 of 6)	AluJr|SINE|Alu	13984	NM_170686	57541	Hs.632032	NM_020781	HPRD:18336	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
19-PTNLD28-TUMOR_peak_15001	chr10	96990549	96990760	+	7.60153	NA	Intergenic	Intergenic	36697	NM_207321	142827	Hs.134229	NM_207321	HPRD:12565	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium-chain family member 6	protein-coding
19-PTNLD28-TUMOR_peak_86391	chr6	29670346	29670648	+	7.60153	NA	Intergenic	Intergenic	-20620	NM_018950	3134	Hs.519972	NM_018950	HPRD:00884	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
19-PTNLD28-TUMOR_peak_24011	chr12	48109445	48109601	+	7.60153	NA	intron (NM_001172439, intron 6 of 9)	intron (NM_001172439, intron 6 of 9)	-9679	NM_024604	79657	Hs.437855	NM_024604		RPAP3	-	RNA polymerase II associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_70995	chr3	134125261	134125636	+	7.60153	NA	Intergenic	Intergenic	-31189	NM_001278683	51421	Hs.426312	NM_016201	HPRD:16485	AMOTL2	LCCP	angiomotin like 2	protein-coding
19-PTNLD28-TUMOR_peak_93958	chr7	92747614	92747720	+	7.60079	NA	promoter-TSS (NM_001193307)	promoter-TSS (NM_001193307)	-331	NM_017654	54809	Hs.65641	NM_017654	HPRD:11531	SAMD9	C7orf5|DRIF1|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_21925	chr11	125997436	125997644	+	7.60079	NA	Intergenic	Intergenic	-64353	NM_001243597	50937	Hs.38034	NM_016952	HPRD:16372	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_13387	chr10	47181776	47181867	+	7.60079	NA	promoter-TSS (NM_001137549).2	promoter-TSS (NM_001137549).2	-133	NM_001137549	100133093	Hs.723078	NM_001137549	ENSG00000197910	FAM25G	FAM25A|FAM25B|FAM25C|bA301J7.4	family with sequence similarity 25, member G	protein-coding
19-PTNLD28-TUMOR_peak_91615	chr7	23393329	23393437	+	7.60079	NA	intron (NM_006547, intron 5 of 14)	intron (NM_006547, intron 5 of 14)	54443	NM_138446	115416	Hs.87385	NM_138446		MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_80919	chr5	79551149	79551496	+	7.59914	NA	intron (NM_178276, intron 1 of 12)	intron (NM_178276, intron 1 of 12)	576	NM_001174072	256987	Hs.288232	NM_178276	HPRD:12828	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19-PTNLD28-TUMOR_peak_62193	chr20	55203480	55203819	+	7.59690	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	-709	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_66887	chr3	15248839	15248938	+	7.59584	NA	intron (NM_014296, intron 1 of 20)	Tigger3b|DNA|TcMar-Tigger	1155	NM_014296	23473	Hs.595234	NM_014296	HPRD:05908	CAPN7	CALPAIN7|PALBH	calpain 7	protein-coding
19-PTNLD28-TUMOR_peak_65335	chr22	36766623	36766771	+	7.59415	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	17366	NM_002473	4627	Hs.474751	NM_002473	HPRD:01177	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin, heavy chain 9, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_47006	chr19	7982348	7982656	+	7.59230	NA	intron (NM_001195259, intron 3 of 5)	CpG-12794	1470	NM_001195259	100507588	Hs.646773	NM_001195259	ENSG00000260001	TGFBR3L	TGFR-3L	transforming growth factor, beta receptor III-like	protein-coding
19-PTNLD28-TUMOR_peak_109901	chrX	153009969	153010116	+	7.59174	NA	3' UTR (NM_000033, exon 10 of 10)	3' UTR (NM_000033, exon 10 of 10)	-19609	NM_005393	5365	Hs.632833	NM_005393	HPRD:02198	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
19-PTNLD28-TUMOR_peak_66928	chr3	15901862	15902004	+	7.59174	NA	promoter-TSS (NM_015199)	promoter-TSS (NM_015199)	-880	NM_015199	23243	Hs.335239	NM_015199	HPRD:10651	ANKRD28	PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_51287	chr2	16032582	16032784	+	7.59051	NA	Intergenic	Intergenic	-27838	NR_125783	103752554	Hs.269571	NR_125783		MYCNUT	MYCNUN|lncUSMycN	MYCN upstream transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_83790	chr5	168714728	168714900	+	7.59051	NA	intron (NM_003062, intron 1 of 35)	intron (NM_003062, intron 1 of 35)	13319	NM_001271946	6586	Hs.552087	NM_003062	HPRD:04775	SLIT3	MEGF5|SLIL2|SLIT1|Slit-3|slit2	slit homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_43731	chr17	76274490	76274788	+	7.59051	NA	promoter-TSS (NR_073178)	promoter-TSS (NR_073178)	-66	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	LOC100996291	-	uncharacterized LOC100996291	ncRNA
19-PTNLD28-TUMOR_peak_58942	chr2	235010848	235010997	+	7.59051	NA	Intergenic	Intergenic	51576	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_62825	chr21	16990457	16990580	+	7.59051	NA	Intergenic	Intergenic	-111826	NM_013396	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_19686	chr11	69500686	69500885	+	7.59051	NA	Intergenic	CpG	-10620	NM_153451	220064	Hs.667996	NM_153451	HPRD:06245	ORAOV1	TAOS1	oral cancer overexpressed 1	protein-coding
19-PTNLD28-TUMOR_peak_108306	chrX	49643932	49644228	+	7.59051	NA	promoter-TSS (NM_001145073)	promoter-TSS (NM_001145073)	-121	NR_026742	158572	Hs.408191	NM_001025449	HPRD:18740	USP27X-AS1	-	USP27X antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_2143	chr1	32913651	32913745	+	7.59051	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-16960	NM_001145720	728116	Hs.647658	NM_001145720		ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
19-PTNLD28-TUMOR_peak_2711	chr1	40457236	40457360	+	7.59051	NA	Intergenic	AluY|SINE|Alu	36514	NM_032793	84879	Hs.655177	NM_032793	HPRD:07861	MFSD2A	MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_758	chr1	11394268	11394363	+	7.59051	NA	Intergenic	AluY|SINE|Alu	61060	NM_013319	29914	Hs.522933	NM_013319	HPRD:15487	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_55760	chr2	132152819	132153182	+	7.59051	NA	Intergenic	CpG	-7474	NR_036499	389043	Hs.586791	NR_036499		LINC01120	-	long intergenic non-protein coding RNA 1120	ncRNA
19-PTNLD28-TUMOR_peak_19311	chr11	65467998	65468105	+	7.59051	NA	Intergenic	MER66C|LTR|ERV1	-11422	NM_006388	10524	Hs.397010	NM_006388	HPRD:03245	KAT5	ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2	K(lysine) acetyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_48633	chr19	35455022	35455266	+	7.59051	NA	promoter-TSS (NM_175872)	promoter-TSS (NM_175872)	-191	NM_175872	126375	Hs.50405	NM_175872	HPRD:13430	ZNF792	-	zinc finger protein 792	protein-coding
19-PTNLD28-TUMOR_peak_6813	chr1	151746366	151746487	+	7.58782	NA	3' UTR (NM_001083964, exon 13 of 13)	3' UTR (NM_001083964, exon 13 of 13)	7295	NM_016178	51686	Hs.713789	NM_016178	HPRD:18670	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
19-PTNLD28-TUMOR_peak_64311	chr22	18923573	18923851	+	7.58782	NA	exon (NM_016335, exon 2 of 15)	exon (NM_016335, exon 2 of 15)	252	NM_001195226	5625	Hs.517352	NM_016335	HPRD:08433	PRODH	HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6	proline dehydrogenase (oxidase) 1	protein-coding
19-PTNLD28-TUMOR_peak_8316	chr1	175094561	175094655	+	7.58782	NA	intron (NM_022093, intron 12 of 18)	intron (NM_022093, intron 12 of 18)	57614	NM_022093	63923	Hs.156369	NM_022093	ENSG00000120332	TNN	TN-W	tenascin N	protein-coding
19-PTNLD28-TUMOR_peak_60280	chr20	25021219	25021367	+	7.58782	NA	intron (NM_001252677, intron 2 of 11)	MER63A|DNA|hAT-Blackjack	-7951	NM_001252676	84532	Hs.529353	NM_032501	HPRD:12413	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
19-PTNLD28-TUMOR_peak_63960	chr21	45871448	45871561	+	7.58782	NA	non-coding (NR_047476, exon 3 of 4)	non-coding (NR_047476, exon 3 of 4)	3663	NR_047476	100861510	Hs.505254	NR_047476	ENSG00000229356	LRRC3-AS1	-	LRRC3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_42144	chr17	47652962	47653196	+	7.58782	NA	promoter-TSS (NM_007225)	promoter-TSS (NM_007225)	-219	NM_007225	11248	Hs.55069	NM_007225		NXPH3	NPH3	neurexophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_90336	chr6	159528572	159528674	+	7.58685	NA	Intergenic	Intergenic	-61806	NM_032532	84624	Hs.520525	NM_032532	HPRD:13547	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_40781	chr17	26875310	26875403	+	7.58685	NA	intron (NM_054035, intron 2 of 3)	intron (NM_054035, intron 2 of 3)	4290	NM_054035	9094	Hs.410455	NM_005148	HPRD:04927	UNC119	HRG4|IMD13|POC7|POC7A	unc-119 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_54947	chr2	112105412	112105682	+	7.58685	NA	Intergenic	Intergenic	-26879	NR_039634	100616499		NR_039634	miRBase:MI0016775	MIR4435-1	-	microRNA 4435-1	ncRNA
19-PTNLD28-TUMOR_peak_85333	chr6	11251988	11252447	+	7.58685	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-19302	NM_001271033	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_1039	chr1	16339215	16339629	+	7.58685	NA	Intergenic	Intergenic	5863	NM_014424	27129	Hs.502612	NM_014424	HPRD:13684	HSPB7	cvHSP	heat shock 27kDa protein family, member 7 (cardiovascular)	protein-coding
19-PTNLD28-TUMOR_peak_42426	chr17	54251412	54251576	+	7.58685	NA	intron (NM_153228, intron 1 of 16)	intron (NM_153228, intron 1 of 16)	20658	NM_153228	162282	Hs.673040	NM_153228	HPRD:08238	ANKFN1	-	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42579	chr17	56394887	56395069	+	7.58685	NA	intron (NM_001261835, intron 14 of 31)	intron (NM_001261835, intron 14 of 31)	-7833	NR_038410	100506779	Hs.718477	NR_038410	ENSG00000265148	BZRAP1-AS1	-	BZRAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42603	chr17	56612352	56612440	+	7.58685	NA	intron (NM_001198713, intron 1 of 11)	intron (NM_001198713, intron 1 of 11)	-2951	NM_080416	5414	Hs.287518	NM_004574	HPRD:04738	SEPT4	ARTS|BRADEION|CE5B3|H5|MART|PNUTL2|SEP4|hCDCREL-2	septin 4	protein-coding
19-PTNLD28-TUMOR_peak_74059	chr4	4228243	4228409	+	7.58685	NA	exon (NM_177998, exon 1 of 6)	exon (NM_177998, exon 1 of 6)	295	NM_177998	133060	Hs.534544	NM_177998	HPRD:07421	OTOP1	-	otopetrin 1	protein-coding
19-PTNLD28-TUMOR_peak_74270	chr4	7755127	7755251	+	7.58685	NA	promoter-TSS (NR_026892)	promoter-TSS (NR_026892)	-628	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1793	chr1	27901775	27901899	+	7.58538	NA	intron (NM_001029882, intron 1 of 6)	CpG	28168	NM_001029882	27245	Hs.469280	NM_001029882	HPRD:10885	AHDC1	MRD25	AT hook, DNA binding motif, containing 1	protein-coding
19-PTNLD28-TUMOR_peak_110013	chrX	153955898	153955996	+	7.58538	NA	intron (NR_104114, intron 1 of 8)	L2a|LINE|L2	23411	NM_001282283	139716	Hs.496982	NM_080612	HPRD:06571	GAB3	-	GRB2-associated binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_84852	chr6	3054500	3054647	+	7.58485	NA	Intergenic	Intergenic	-22485	NM_003804	8737	Hs.519842	NM_003804	HPRD:04583	RIPK1	RIP|RIP1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_10909	chr1	233247623	233247846	+	7.58407	NA	intron (NM_014801, intron 21 of 33)	intron (NM_014801, intron 21 of 33)	161364	NM_032324	84284	Hs.642715	NM_032324		NTPCR	C1orf57|HCR-NTPase	nucleoside-triphosphatase, cancer-related	protein-coding
19-PTNLD28-TUMOR_peak_47197	chr19	10394012	10394132	+	7.58391	NA	intron (NM_000201, intron 2 of 6)	intron (NM_000201, intron 2 of 6)	-3571	NM_001544	3386	Hs.706750	NM_001544	HPRD:00198	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
19-PTNLD28-TUMOR_peak_48530	chr19	33543323	33543576	+	7.58391	NA	intron (NM_033103, intron 1 of 14)	intron (NM_033103, intron 1 of 14)	12375	NM_033103	85415	Hs.466435	NM_033103	HPRD:10192	RHPN2	P76RBE|RHOBP	rhophilin, Rho GTPase binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_6720	chr1	150952062	150952258	+	7.58391	NA	Intergenic	Intergenic	-2339	NM_003568	8416	Hs.3346	NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
19-PTNLD28-TUMOR_peak_92716	chr7	56515680	56515861	+	7.58374	NA	intron (NR_029420, intron 1 of 5)	CpG	298	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_48872	chr19	38735866	38736030	+	7.58374	NA	Intergenic	AluY|SINE|Alu	11283	NM_033256	94274	Hs.631569	NM_033256	HPRD:16291	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding
19-PTNLD28-TUMOR_peak_41078	chr17	33640412	33640539	+	7.58374	NA	Intergenic	Intergenic	60245	NM_001104589	91607	Hs.745059	NM_152270	HPRD:08178	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
19-PTNLD28-TUMOR_peak_27913	chr13	40423984	40424179	+	7.58374	NA	Intergenic	L1PA5|LINE|L1	-185809	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_63452	chr21	38592825	38593267	+	7.58374	NA	non-coding (NR_026719, exon 3 of 3)	non-coding (NR_026719, exon 3 of 3)	12242	NR_026719	257203	Hs.505159	NM_148675	HPRD:10925	DSCR9	NCRNA00038	Down syndrome critical region gene 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_80167	chr5	60627184	60627525	+	7.58371	NA	promoter-TSS (NM_020928)	promoter-TSS (NM_020928)	-746	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_63883	chr21	45152263	45152576	+	7.58228	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	13441	NM_003681	8566	Hs.284491	NM_003681	HPRD:01526	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
19-PTNLD28-TUMOR_peak_36772	chr16	22103772	22103923	+	7.58149	NA	promoter-TSS (NM_173615)	promoter-TSS (NM_173615)	-12	NM_173615	146177	Hs.10697	NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_26096	chr12	108001413	108001510	+	7.58149	NA	intron (NM_001018072, intron 4 of 16)	intron (NM_001018072, intron 4 of 16)	26827	NM_001017523	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_27330	chr13	19790382	19790482	+	7.58149	NA	Intergenic	L1P1|LINE|L1	-34440	NM_006001	7278	Hs.349695	NM_006001		TUBA3C	TUBA2|bA408E5.3	tubulin, alpha 3c	protein-coding
19-PTNLD28-TUMOR_peak_12989	chr10	38186390	38186502	+	7.58149	NA	Intergenic	L1PA2|LINE|L1	-39434	NM_001267597	57209	Hs.528423	NM_021045	HPRD:15757	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
19-PTNLD28-TUMOR_peak_5902	chr1	118263328	118263417	+	7.58149	NA	Intergenic	L1PA4|LINE|L1	114768	NM_017709	54855	Hs.356216	NM_017709	HPRD:13312	FAM46C	-	family with sequence similarity 46, member C	protein-coding
19-PTNLD28-TUMOR_peak_56848	chr2	169579183	169579418	+	7.58149	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	63639	NR_045787	100861402	Hs.506829	NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82982	chr5	146047329	146047470	+	7.58149	NA	intron (NR_073526, intron 4 of 8)	intron (NR_073526, intron 4 of 8)	-151723	NM_194251	134391	Hs.483732	NM_194251		GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
19-PTNLD28-TUMOR_peak_36061	chr16	5074762	5074919	+	7.58149	NA	TTS (NM_016256)	TTS (NM_016256)	-8863	NR_038913	100507589	Hs.729936	NR_038913		NAGPA-AS1	-	NAGPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26317	chr12	111708785	111708911	+	7.58149	NA	intron (NM_015267, intron 4 of 21)	intron (NM_015267, intron 4 of 21)	-33098	NR_106818	102465455		NR_106818		MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
19-PTNLD28-TUMOR_peak_104389	chr9	90811456	90811614	+	7.58149	NA	Intergenic	MER41E|LTR|ERV1	-61635	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	SPATA31 subfamily C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_88775	chr6	91115966	91116057	+	7.58149	NA	Intergenic	MER110A|LTR|ERV1	93550	NR_039671	100616109		NR_039671	miRBase:MI0016812	MIR4464	-	microRNA 4464	ncRNA
19-PTNLD28-TUMOR_peak_50198	chr19	53811469	53811613	+	7.58149	NA	Intergenic	L1MA5A|LINE|L1	-16666	NM_033341	112401	Hs.348263	NM_033341	HPRD:12525	BIRC8	ILP-2|ILP2|hILP2	baculoviral IAP repeat containing 8	protein-coding
19-PTNLD28-TUMOR_peak_55783	chr2	132715700	132715907	+	7.58149	NA	Intergenic	Intergenic	-156569	NM_214461	408029	Hs.145567	NM_214461	HPRD:14664	C2orf27B	-	chromosome 2 open reading frame 27B	protein-coding
19-PTNLD28-TUMOR_peak_67989	chr3	47584381	47584660	+	7.58149	NA	Intergenic	Intergenic	-29321	NM_001031703	54859	Hs.311100	NM_017713	HPRD:07884	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_17443	chr11	17085105	17085197	+	7.58149	NA	Intergenic	Intergenic	11718	NR_045002	10819	Hs.523504	NR_045002	ENSG00000184669	OR7E14P	OR11-5|OR7E151P	olfactory receptor, family 7, subfamily E, member 14 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_75472	chr4	58169354	58169623	+	7.58149	NA	Intergenic	L1PA5|LINE|L1	-192937	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_94608	chr7	103556544	103556632	+	7.58149	NA	intron (NM_005045, intron 2 of 64)	intron (NM_005045, intron 2 of 64)	73375	NM_005045	5649	Hs.655654	NM_005045	HPRD:02742	RELN	LIS2|PRO1598|RL	reelin	protein-coding
19-PTNLD28-TUMOR_peak_76507	chr4	107331091	107331290	+	7.58149	NA	Intergenic	LTR30|LTR|ERV1	-42598	NM_001195138	100507096	Hs.722750	NM_001195138		GIMD1	-	GIMAP family P-loop NTPase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81469	chr5	108021473	108021762	+	7.58149	NA	Intergenic	L1P2|LINE|L1	42345	NR_046368	100652853	Hs.133009	NR_046368	ENSG00000272523	LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
19-PTNLD28-TUMOR_peak_14869	chr10	92617419	92617553	+	7.58149	NA	5' UTR (NM_019859, exon 1 of 4)	5' UTR (NM_019859, exon 1 of 4)	185	NM_000872	3363	Hs.73739	NM_000872	HPRD:01639	HTR7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled	protein-coding
19-PTNLD28-TUMOR_peak_54377	chr2	98362048	98362173	+	7.58149	NA	Intergenic	L1MB4|LINE|L1	11241	NM_207519	7535	Hs.234569	NM_001079	HPRD:01495	ZAP70	SRK|STCD|STD|TZK|ZAP-70	zeta-chain (TCR) associated protein kinase 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_100894	chr8	129727097	129727191	+	7.58149	NA	Intergenic	L1PA2|LINE|L1	-150219	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_21375	chr11	116370200	116370331	+	7.58149	NA	Intergenic	MER91B|DNA|hAT-Tip100	273449	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_53023	chr2	63063124	63063212	+	7.58149	NA	intron (NM_001142614, intron 6 of 22)	L1PA2|LINE|L1	129136	NM_001142614	23301	Hs.271667	NM_015252	HPRD:10109	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108091	chrX	44900971	44901160	+	7.58149	NA	intron (NR_111960, intron 8 of 27)	SVA_D|Other|Other	159081	NM_024689	79742	Hs.98321	NM_024689	HPRD:06524	CXorf36	4930578C19Rik|DIA1R|EPQL1862|PRO3743|bA435K1.1	chromosome X open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_23970	chr12	47011742	47011878	+	7.58149	NA	intron (NR_125377, intron 3 of 3)	L1PA3|LINE|L1	207970	NM_001143824	55089	Hs.446077	NM_018018	HPRD:12159	SLC38A4	ATA3|NAT3|PAAT	solute carrier family 38, member 4	protein-coding
19-PTNLD28-TUMOR_peak_30676	chr14	62044469	62044615	+	7.58149	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-7171	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_50456	chr19	56764253	56764466	+	7.58149	NA	Intergenic	LTR41B|LTR|ERVL	-24700	NM_024303	79149	Hs.177688	NM_024303	HPRD:15900	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
19-PTNLD28-TUMOR_peak_97512	chr8	21569342	21569431	+	7.58149	NA	intron (NM_001165038, intron 3 of 7)	SVA_D|Other|Other	76960	NM_001495	2675	Hs.441202	NM_001495	HPRD:11801	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_61877	chr20	49536330	49536418	+	7.58149	NA	intron (NM_001282531, intron 2 of 5)	intron (NM_001282531, intron 2 of 5)	-10046	NM_001282532	23394	Hs.293736	NM_015339	HPRD:09793	ADNP	ADNP1|MRD28	activity-dependent neuroprotector homeobox	protein-coding
19-PTNLD28-TUMOR_peak_89087	chr6	110868846	110869056	+	7.58149	NA	Intergenic	Intergenic	-71107	NM_033125	85413	Hs.520319	NM_033125	HPRD:12202	SLC22A16	CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 (organic cation/carnitine transporter), member 16	protein-coding
19-PTNLD28-TUMOR_peak_80393	chr5	67615164	67615368	+	7.57881	NA	Intergenic	Intergenic	26870	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_19826	chr11	71710567	71710715	+	7.57618	NA	promoter-TSS (NM_001145055)	promoter-TSS (NM_001145055)	-22	NM_001145057	10068	Hs.591967	NM_005699	HPRD:04984	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_72	chr1	856558	856689	+	7.57618	NA	Intergenic	Intergenic	-1551	NR_122045	100130417	Hs.200644	NM_175912		LOC100130417	-	uncharacterized LOC100130417	ncRNA
19-PTNLD28-TUMOR_peak_74130	chr4	5884783	5884951	+	7.57618	NA	intron (NM_001014809, intron 1 of 13)	intron (NM_001014809, intron 1 of 13)	4673	NM_001288662	1400	Hs.135270	NM_001313	HPRD:03913	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
19-PTNLD28-TUMOR_peak_92447	chr7	47621630	47622096	+	7.57618	NA	promoter-TSS (NM_022748)	promoter-TSS (NM_022748)	-121	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_13549	chr10	50618013	50618135	+	7.57618	NA	Intergenic	Intergenic	-14012	NM_001276451	644168	Hs.534530	NM_001080520		DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
19-PTNLD28-TUMOR_peak_90657	chr6	170449293	170449398	+	7.57618	NA	Intergenic	Intergenic	122312	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
19-PTNLD28-TUMOR_peak_47428	chr19	12746466	12746729	+	7.57618	NA	Intergenic	AluY|SINE|Alu	24865	NM_153358	163049	Hs.720677	NM_153358	HPRD:08295	ZNF791	-	zinc finger protein 791	protein-coding
19-PTNLD28-TUMOR_peak_110004	chrX	153828753	153828886	+	7.57133	NA	Intergenic	Intergenic	15401	NM_139250	246100	Hs.534310	NM_139250	HPRD:06607	CTAG1A	ESO1|LAGE2A	cancer/testis antigen 1A	protein-coding
19-PTNLD28-TUMOR_peak_30764	chr14	64971134	64971534	+	7.57100	NA	promoter-TSS (NM_014950)	promoter-TSS (NM_014950)	42	NM_001123329	22890	Hs.605143	NM_014950	HPRD:15688	ZBTB1	ZNF909	zinc finger and BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_56376	chr2	153575325	153575413	+	7.56965	NA	exon (NM_152522, exon 1 of 4)	exon (NM_152522, exon 1 of 4)	962	NR_024526	151188	Hs.643580	NM_152522	HPRD:12485	ARL6IP6	AIP-6|PFAAP1	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
19-PTNLD28-TUMOR_peak_32172	chr14	103542143	103542242	+	7.56735	NA	Intergenic	Intergenic	-18450	NM_006035	9578	Hs.654634	NM_006035	HPRD:08516	CDC42BPB	MRCKB	CDC42 binding protein kinase beta (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_9630	chr1	205426297	205426455	+	7.56354	NA	Intergenic	CpG-2097	-1162	NR_103783	101669762	Hs.666219	NR_103783		BLACAT1	LINC00912|linc-UBC1	bladder cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11441	chr1	245317103	245317233	+	7.56354	NA	Intergenic	CpG	-1119	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_105332	chr9	112317637	112317725	+	7.56354	NA	Intergenic	Intergenic	-57088	NM_001145368	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_33607	chr15	52577732	52577821	+	7.56245	NA	intron (NM_018728, intron 1 of 40)	SVA_D|Other|Other	-8379	NR_031670	100302202		NR_031670		MIR1266	MIRN1266|hsa-mir-1266	microRNA 1266	ncRNA
19-PTNLD28-TUMOR_peak_105592	chr9	117135391	117135479	+	7.56245	NA	intron (NM_030767, intron 4 of 21)	intron (NM_030767, intron 4 of 21)	21250	NM_030767	80709	Hs.494895	NM_030767	HPRD:16148	AKNA	-	AT-hook transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_90245	chr6	158184865	158184968	+	7.56106	NA	Intergenic	Intergenic	-59287	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_17526	chr11	18820709	18820854	+	7.55814	NA	Intergenic	MIR|SINE|MIR	-6513	NM_001278236	84867	Hs.79092	NM_006906	HPRD:01472	PTPN5	PTPSTEP|STEP	protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)	protein-coding
19-PTNLD28-TUMOR_peak_84948	chr6	3965670	3965834	+	7.55814	NA	Intergenic	MER50B|LTR|ERV1	-55817	NM_003913	8899	Hs.159014	NM_003913	HPRD:09087	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding
19-PTNLD28-TUMOR_peak_26751	chr12	121951714	121951813	+	7.55814	NA	intron (NM_001005366, intron 9 of 22)	intron (NM_001005366, intron 9 of 22)	66601	NM_001005366	84678	Hs.524800	NM_032590	HPRD:12362	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine (K)-specific demethylase 2B	protein-coding
19-PTNLD28-TUMOR_peak_46964	chr19	7459938	7460101	+	7.55814	NA	promoter-TSS (NM_015318)	promoter-TSS (NM_015318)	20	NM_015318	23370	Hs.465761	NM_015318	HPRD:12479	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
19-PTNLD28-TUMOR_peak_88132	chr6	56716624	56716739	+	7.55814	NA	promoter-TSS (NM_001144770)	promoter-TSS (NM_001144770)	33	NM_001144770	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_10180	chr1	221565780	221566112	+	7.55814	NA	Intergenic	Intergenic	-56308	NR_024236	400804	Hs.722626	NR_024236	HPRD:17386	C1orf140	-	uncharacterized LOC400804	ncRNA
19-PTNLD28-TUMOR_peak_83688	chr5	165572131	165572242	+	7.55814	NA	Intergenic	L1HS|LINE|L1	781189	NR_108020	102557615		NR_108020		CTB-7E3.1	-	uncharacterized LOC102557615	ncRNA
19-PTNLD28-TUMOR_peak_47621	chr19	14405900	14406020	+	7.55814	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-85996	NM_078481	976	Hs.466039	NM_001784	HPRD:03130	CD97	TM7LN1	CD97 molecule	protein-coding
19-PTNLD28-TUMOR_peak_45983	chr18	56815531	56815959	+	7.55814	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	8620	NM_033280	90701	Hs.45107	NM_033280	HPRD:15310	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_20246	chr11	77978794	77978889	+	7.55814	NA	intron (NM_012296, intron 2 of 9)	AluY|SINE|Alu	74085	NM_012296	9846	Hs.429434	NM_012296	HPRD:05866	GAB2	-	GRB2-associated binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_22376	chr12	626838	627005	+	7.55814	NA	intron (NM_173593, intron 1 of 19)	MIRb|SINE|MIR	57378	NM_173593	283358	Hs.504416	NM_173593	HPRD:12514	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding
19-PTNLD28-TUMOR_peak_22613	chr12	4829265	4829632	+	7.55814	NA	promoter-TSS (NM_017417)	promoter-TSS (NM_017417)	-180	NR_110112	101929549	Hs.663336	NR_110112	ENSG00000255474	LOC101929549	-	uncharacterized LOC101929549	ncRNA
19-PTNLD28-TUMOR_peak_6228	chr1	144908891	144908981	+	7.55814	NA	intron (NM_001002811, intron 13 of 18)	intron (NM_001002811, intron 13 of 18)	23429	NM_001002811	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_104812	chr9	99248748	99249142	+	7.55814	NA	intron (NM_014282, intron 6 of 7)	intron (NM_014282, intron 6 of 7)	36508	NM_014282	22927	Hs.494567	NM_014282	HPRD:13628	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_83040	chr5	147319122	147319249	+	7.55814	NA	Intergenic	L1M1|LINE|L1	-33084	NM_206966	389336	Hs.660038	NM_206966	HPRD:14491	C5orf46	SSSP1	chromosome 5 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_29375	chr14	21526022	21526154	+	7.55814	NA	promoter-TSS (NM_138331)	promoter-TSS (NM_138331)	36	NM_138331	122665	Hs.553572	NM_138331		RNASE8	-	ribonuclease, RNase A family, 8	protein-coding
19-PTNLD28-TUMOR_peak_11526	chr1	247520533	247520636	+	7.55699	NA	Intergenic	LTR19C|LTR|ERV1	-25539	NM_032752	84838	Hs.654803	NM_032752	HPRD:15805	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
19-PTNLD28-TUMOR_peak_96835	chr8	182576	182832	+	7.55699	NA	promoter-TSS (NR_003572)	promoter-TSS (NR_003572)	154	NM_001287254	169270	Hs.591388	NM_173539	HPRD:11731	ZNF596	-	zinc finger protein 596	protein-coding
19-PTNLD28-TUMOR_peak_66389	chr3	8757624	8758078	+	7.55699	NA	Intergenic	L1PA3|LINE|L1	-17635	NM_033337	859	Hs.98303	NM_001234	HPRD:03154	CAV3	LGMD1C|LQT9|VIP-21|VIP21	caveolin 3	protein-coding
19-PTNLD28-TUMOR_peak_51279	chr2	15922643	15922829	+	7.55699	NA	Intergenic	Intergenic	91830	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LOC101926966	-	uncharacterized LOC101926966	ncRNA
19-PTNLD28-TUMOR_peak_100853	chr8	129069541	129069656	+	7.55699	NA	intron (NR_003367, intron 4 of 7)	intron (NR_003367, intron 4 of 7)	8200	NR_031612	100302175		NR_031612	miRBase:MI0006340	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
19-PTNLD28-TUMOR_peak_21519	chr11	118662407	118662569	+	7.55699	NA	promoter-TSS (NM_004397)	promoter-TSS (NM_004397)	-516	NM_004397	1656	Hs.408461	NM_004397		DDX6	HLR2|P54|RCK	DEAD (Asp-Glu-Ala-Asp) box helicase 6	protein-coding
19-PTNLD28-TUMOR_peak_49317	chr19	45130186	45130291	+	7.55669	NA	intron (NM_001205280, intron 2 of 4)	L2b|LINE|L2	13298	NM_001205280	147710	Hs.512509	NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily, member 23	protein-coding
19-PTNLD28-TUMOR_peak_7575	chr1	160055509	160055676	+	7.55669	NA	intron (NM_004983, intron 2 of 2)	intron (NM_004983, intron 2 of 2)	4232	NM_004983	3765	Hs.66726	NM_004983		KCNJ9	GIRK3|KIR3.3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding
19-PTNLD28-TUMOR_peak_80080	chr5	58182584	58182707	+	7.55669	NA	Intergenic	Intergenic	113114	NM_001197223	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_2154	chr1	33168635	33168972	+	7.55515	NA	promoter-TSS (NM_030786)	promoter-TSS (NM_030786)	-442	NM_030786	81493	Hs.712631	NM_030786	HPRD:18134	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
19-PTNLD28-TUMOR_peak_3451	chr1	51435289	51435536	+	7.55505	NA	promoter-TSS (NM_078626)	promoter-TSS (NM_078626)	-230	NM_078626	1031	Hs.525324	NM_001262	HPRD:04534	CDKN2C	INK4C|p18|p18-INK4C	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_66521	chr3	10231334	10231490	+	7.55501	NA	intron (NM_001570, intron 2 of 12)	intron (NM_001570, intron 2 of 12)	24849	NM_001570	3656	Hs.449207	NM_001570	HPRD:04491	IRAK2	IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_6894	chr1	152629809	152629965	+	7.55484	NA	Intergenic	Intergenic	-6000	NM_178430	353141	Hs.490225	NM_178430	HPRD:17261	LCE2D	LEP12|SPRL1A	late cornified envelope 2D	protein-coding
19-PTNLD28-TUMOR_peak_64378	chr22	19899868	19900004	+	7.55484	NA	intron (NM_001282512, intron 7 of 11)	intron (NM_001282512, intron 7 of 11)	-29327	NM_000754	1312	Hs.370408	NM_000754	HPRD:00284	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_43858	chr17	78003176	78003304	+	7.55484	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	6417	NM_019020	125058	Hs.369819	NM_019020	HPRD:10261	TBC1D16	-	TBC1 domain family, member 16	protein-coding
19-PTNLD28-TUMOR_peak_60361	chr20	29518239	29518341	+	7.55484	NA	Intergenic	SST1|Satellite|centr	-93589	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_39372	chr16	88701195	88701511	+	7.55439	NA	Intergenic	CpG	-3648	NM_013278	27189	Hs.278911	NM_013278	HPRD:06863	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
19-PTNLD28-TUMOR_peak_914	chr1	14026915	14027136	+	7.55334	NA	intron (NM_001135610, intron 1 of 7)	CpG	290	NM_001135610	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_58088	chr2	208541646	208541743	+	7.55334	NA	Intergenic	Intergenic	-34570	NM_001142300	151195	Hs.471234	NM_152523	HPRD:08809	CCNYL1	-	cyclin Y-like 1	protein-coding
19-PTNLD28-TUMOR_peak_93746	chr7	84304160	84304260	+	7.55334	NA	Intergenic	MLT2D|LTR|ERVL	142418	NR_110079	101927378	Hs.539042	NR_110079	ENSG00000235139	LOC101927378	-	uncharacterized LOC101927378	ncRNA
19-PTNLD28-TUMOR_peak_90540	chr6	167791951	167792189	+	7.55334	NA	intron (NM_004610, intron 3 of 7)	intron (NM_004610, intron 3 of 7)	5928	NM_004610	6953	Hs.351	NM_004610		TCP10	TCP10A	t-complex 10	protein-coding
19-PTNLD28-TUMOR_peak_29204	chr13	114611195	114611528	+	7.55334	NA	intron (NM_001278674, intron 3 of 7)	intron (NM_001278674, intron 3 of 7)	13285	NM_001278674	643365	Hs.740982	NM_001039767		LINC00452	-	long intergenic non-protein coding RNA 452	protein-coding
19-PTNLD28-TUMOR_peak_59612	chr20	4129318	4129533	+	7.55334	NA	promoter-TSS (NM_175842)	promoter-TSS (NM_175842)	-1	NM_175840	54498	Hs.433337	NM_175839	HPRD:11587	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
19-PTNLD28-TUMOR_peak_31298	chr14	75231047	75231206	+	7.55334	NA	intron (NM_019589, intron 1 of 20)	intron (NM_019589, intron 1 of 20)	1057	NM_019589	56252	Hs.531111	NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_7780	chr1	162792514	162792758	+	7.55334	NA	Intergenic	Intergenic	32140	NM_016371	51478	Hs.492925	NM_016371	HPRD:05996	HSD17B7	PRAP|SDR37C1	hydroxysteroid (17-beta) dehydrogenase 7	protein-coding
19-PTNLD28-TUMOR_peak_74387	chr4	8899656	8899761	+	7.55334	NA	Intergenic	Intergenic	-26165	NM_018942	3166	Hs.104134	NM_018942	HPRD:00873	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_18258	chr11	44606541	44606634	+	7.55334	NA	intron (NM_001024844, intron 1 of 8)	intron (NM_001024844, intron 1 of 8)	19446	NM_001024844	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_83718	chr5	167592776	167592991	+	7.55334	NA	intron (NM_001122679, intron 13 of 28)	intron (NM_001122679, intron 13 of 28)	66494	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA
19-PTNLD28-TUMOR_peak_77207	chr4	140576446	140576621	+	7.55334	NA	Intergenic	Intergenic	-10389	NM_001204368	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_81216	chr5	95096331	95096510	+	7.55334	NA	intron (NM_014899, intron 6 of 11)	intron (NM_014899, intron 6 of 11)	29570	NM_014899	22836	Hs.445030	NM_014899	HPRD:09557	RHOBTB3	-	Rho-related BTB domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_3924	chr1	61523323	61523698	+	7.55334	NA	Intergenic	AluSq2|SINE|Alu	-19436	NM_001145511	4774	Hs.740757	NM_005595	HPRD:09007	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I/A	protein-coding
19-PTNLD28-TUMOR_peak_63473	chr21	38991569	38991670	+	7.55334	NA	Intergenic	Intergenic	199017	NM_001396	1859	Hs.368240	NM_001396	HPRD:09018	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	protein-coding
19-PTNLD28-TUMOR_peak_97873	chr8	27850220	27850484	+	7.55334	NA	promoter-TSS (NM_173833)	promoter-TSS (NM_173833)	17	NM_173833	286133	Hs.591833	NM_173833	HPRD:11356	SCARA5	NET33|Tesr	scavenger receptor class A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_63748	chr21	43708489	43708588	+	7.55334	NA	intron (NM_207628, intron 12 of 16)	AluSz|SINE|Alu	27168	NM_003226	7033	Hs.82961	NM_003226	HPRD:02797	TFF3	ITF|P1B|TFI	trefoil factor 3 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_16913	chr11	7593018	7593142	+	7.55334	NA	intron (NM_003621, intron 3 of 23)	intron (NM_003621, intron 3 of 23)	-25337	NM_001256568	8495	Hs.655714	NM_003621	HPRD:04391	PPFIBP2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding
19-PTNLD28-TUMOR_peak_21112	chr11	111325561	111325736	+	7.55334	NA	Intergenic	Intergenic	-36737	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
19-PTNLD28-TUMOR_peak_91845	chr7	30518076	30518512	+	7.55334	NA	promoter-TSS (NM_006092)	promoter-TSS (NM_006092)	99	NM_006092	10392	Hs.405153	NM_006092	HPRD:05815	NOD1	CARD4|CLR7.1|NLRC1	nucleotide-binding oligomerization domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_46419	chr18	77509379	77509665	+	7.55301	NA	intron (NM_048368, intron 11 of 11)	intron (NM_048368, intron 11 of 11)	68092	NM_001202504	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_73797	chr4	1046958	1047356	+	7.55173	NA	Intergenic	Intergenic	40905	NM_021923	53834	Hs.193326	NM_021923	HPRD:16163	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_66625	chr3	11684814	11684938	+	7.55173	NA	intron (NM_014667, intron 2 of 5)	CpG	575	NM_001128219	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_29500	chr14	23623197	23623388	+	7.55173	NA	intron (NM_012244, intron 3 of 10)	intron (NM_012244, intron 3 of 10)	367	NM_182728	23428	Hs.596643	NM_012244	HPRD:11971	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 (amino acid transporter light chain, L system), member 8	protein-coding
19-PTNLD28-TUMOR_peak_50747	chr2	676366	676456	+	7.54405	NA	intron (NM_152834, intron 1 of 4)	intron (NM_152834, intron 1 of 4)	1028	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_38317	chr16	67279833	67280296	+	7.54278	NA	intron (NM_013241, intron 1 of 21)	CpG	1361	NM_013241	29109	Hs.95231	NM_013241	HPRD:06049	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97580	chr8	22250830	22251095	+	7.54278	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	25912	NM_001135153	23516	Hs.491232	NM_015359	HPRD:12288	SLC39A14	LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 (zinc transporter), member 14	protein-coding
19-PTNLD28-TUMOR_peak_50295	chr19	54942871	54942979	+	7.53999	NA	intron (NM_001005367, intron 10 of 12)	intron (NM_001005367, intron 10 of 12)	16320	NM_020659	57348	Hs.268728	NM_020659	HPRD:12043	TTYH1	-	tweety family member 1	protein-coding
19-PTNLD28-TUMOR_peak_60916	chr20	36543470	36543865	+	7.53999	NA	intron (NM_080607, intron 1 of 3)	intron (NM_080607, intron 1 of 3)	12168	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_74331	chr4	8262422	8262707	+	7.53999	NA	Intergenic	Intergenic	-8928	NM_001297559	94031	Hs.479119	NM_053044	HPRD:08821	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_42667	chr17	57907492	57907631	+	7.53859	NA	intron (NM_030938, intron 10 of 11)	AluJb|SINE|Alu	-11066	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
19-PTNLD28-TUMOR_peak_40802	chr17	27070480	27070728	+	7.53702	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-419	NM_004295	9618	Hs.8375	NM_004295	HPRD:03915	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_105223	chr9	110501255	110501386	+	7.53675	NA	Intergenic	MIRb|SINE|MIR	-249273	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_46446	chr18	77794628	77794777	+	7.53537	NA	intron (NM_001171967, intron 1 of 5)	CpG	356	NM_024805	79863	Hs.728931	NM_024805		RBFA	C18orf22|HsT169	ribosome binding factor A (putative)	protein-coding
19-PTNLD28-TUMOR_peak_53552	chr2	74642097	74642393	+	7.53537	NA	exon (NM_001145054, exon 4 of 4)	exon (NM_001145054, exon 4 of 4)	2599	NM_001145054	388963	Hs.445377	NM_001145054	ENSG00000159239	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
19-PTNLD28-TUMOR_peak_108426	chrX	55035079	55035193	+	7.53076	NA	TTS (NM_001271748)	TTS (NM_001271748)	8380	NM_001271748	27301	Hs.659558	NM_014481		APEX2	APE2|APEXL2|XTH2|ZGRF2	APEX nuclease (apurinic/apyrimidinic endonuclease) 2	protein-coding
19-PTNLD28-TUMOR_peak_40922	chr17	29335421	29335818	+	7.53076	NA	Intergenic	CpG	33266	NR_002221	503645	Hs.683578	NR_002221		DPRXP4	-	divergent-paired related homeobox pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_26027	chr12	106589347	106589646	+	7.53076	NA	Intergenic	Intergenic	52217	NM_006825	10970	Hs.74368	NM_006825	HPRD:16717	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_73569	chr3	196070455	196070587	+	7.53076	NA	Intergenic	LTR8|LTR|ERV1	-5230	NM_001204898	116211	Hs.733264	NM_138461	HPRD:14013	TM4SF19	-	transmembrane 4 L six family member 19	protein-coding
19-PTNLD28-TUMOR_peak_59013	chr2	236460589	236460794	+	7.53076	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	57958	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_77353	chr4	142804026	142804127	+	7.53076	NA	Intergenic	L1PA2|LINE|L1	246327	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_65832	chr22	44225932	44226074	+	7.53076	NA	intron (NM_014351, intron 5 of 6)	intron (NM_014351, intron 5 of 6)	-17786	NM_198856	64800	Hs.658996	NM_022785	HPRD:13391	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
19-PTNLD28-TUMOR_peak_8304	chr1	174818103	174818284	+	7.53076	NA	intron (NM_014857, intron 19 of 20)	L1PA2|LINE|L1	-25331	NM_001243763	9910	Hs.585378	NM_014857	HPRD:16464	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_12905	chr10	35002938	35003041	+	7.53076	NA	intron (NM_001184791, intron 1 of 20)	intron (NM_001184791, intron 1 of 20)	101264	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_2450	chr1	36877577	36877686	+	7.53076	NA	Intergenic	MER51A|LTR|ERV1	-14138	NM_032881	84967	Hs.603131	NM_032881	HPRD:14326	LSM10	MST074|MSTP074	LSM10, U7 small nuclear RNA associated	protein-coding
19-PTNLD28-TUMOR_peak_38959	chr16	81307677	81307908	+	7.53076	NA	intron (NM_017429, intron 7 of 10)	intron (NM_017429, intron 7 of 10)	35496	NM_017429	53630	Hs.212172	NM_017429	HPRD:12042	BCO1	BCDO|BCDO1|BCMO|BCMO1|BCO	beta-carotene oxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_40038	chr17	7919337	7919463	+	7.53076	NA	intron (NM_000180, intron 17 of 19)	CpG-10127	13412	NM_000180	3000	Hs.592109	NM_000180	HPRD:02550	GUCY2D	CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, membrane (retina-specific)	protein-coding
19-PTNLD28-TUMOR_peak_75465	chr4	58020647	58020738	+	7.53076	NA	intron (NR_034081, intron 1 of 4)	LOR1b|LTR|ERV1	-44141	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_78076	chr4	174425383	174425547	+	7.53076	NA	Intergenic	Intergenic	25913	NM_021973	9464	Hs.388245	NM_021973	HPRD:03872	HAND2	DHAND2|Hed|Thing2|bHLHa26|dHand	heart and neural crest derivatives expressed 2	protein-coding
19-PTNLD28-TUMOR_peak_80317	chr5	65876272	65876366	+	7.53076	NA	Intergenic	Intergenic	-15857	NM_001164664	375449	Hs.595458	NM_015183	HPRD:14195	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
19-PTNLD28-TUMOR_peak_57014	chr2	174052738	174052869	+	7.53076	NA	intron (NM_016653, intron 5 of 19)	intron (NM_016653, intron 5 of 19)	93961	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MLK7-AS1	-	MLK7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89604	chr6	137345886	137346033	+	7.53076	NA	intron (NM_014432, intron 1 of 6)	intron (NM_014432, intron 1 of 6)	19490	NM_001278722	53832	Hs.445868	NM_014432	HPRD:05729	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_15666	chr10	113897331	113897426	+	7.53076	NA	Intergenic	Intergenic	46159	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_93743	chr7	84177720	84177966	+	7.53076	NA	intron (NR_110080, intron 1 of 3)	intron (NR_110080, intron 1 of 3)	16051	NR_110079	101927378	Hs.539042	NR_110079	ENSG00000235139	LOC101927378	-	uncharacterized LOC101927378	ncRNA
19-PTNLD28-TUMOR_peak_71054	chr3	135702138	135702245	+	7.53076	NA	intron (NM_001190447, intron 1 of 12)	L2a|LINE|L2	17676	NM_002718	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_96666	chr7	156327753	156327862	+	7.53076	NA	intron (NR_103858, intron 1 of 1)	intron (NR_103858, intron 1 of 1)	-5378	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	ncRNA
19-PTNLD28-TUMOR_peak_35408	chr15	98838518	98838617	+	7.53076	NA	Intergenic	Intergenic	-206585	NR_120325	101927332		NR_120325		LOC101927332	-	uncharacterized LOC101927332	ncRNA
19-PTNLD28-TUMOR_peak_56793	chr2	166755016	166755104	+	7.53076	NA	intron (NM_024753, intron 22 of 28)	L2a|LINE|L2	-26609	NR_045375	100506124	Hs.709870	NR_045375		LOC100506124	-	uncharacterized LOC100506124	ncRNA
19-PTNLD28-TUMOR_peak_43990	chr17	79584807	79584911	+	7.53076	NA	intron (NM_017921, intron 3 of 16)	SVA_D|Other|Other	19279	NM_017921	55666	Hs.464333	NM_017921	HPRD:06975	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_29354	chr14	21188057	21188286	+	7.53076	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-25928	NM_006683	10876	Hs.304757	NM_006683	HPRD:13289	EDDM3A	EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1	epididymal protein 3A	protein-coding
19-PTNLD28-TUMOR_peak_572	chr1	9161754	9161883	+	7.53076	NA	Intergenic	Intergenic	27411	NM_024980	80045	Hs.632367	NM_024980		GPR157	-	G protein-coupled receptor 157	protein-coding
19-PTNLD28-TUMOR_peak_85255	chr6	10134642	10134782	+	7.53076	NA	Intergenic	L1P1|LINE|L1	-277839	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20040	chr11	74747047	74747255	+	7.53076	NA	Intergenic	Intergenic	47201	NM_006656	10825	Hs.191074	NM_006656		NEU3	SIAL3	sialidase 3 (membrane sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_68510	chr3	56758695	56758841	+	7.53076	NA	Intergenic	Intergenic	-41633	NM_001112736	23272	Hs.116877	NM_015224	HPRD:10183	FAM208A	C3orf63|RAP140|se89-1	family with sequence similarity 208, member A	protein-coding
19-PTNLD28-TUMOR_peak_34915	chr15	83894221	83894453	+	7.53076	NA	Intergenic	L1P2|LINE|L1	-17567	NM_016073	50810	Hs.513954	NM_016073	HPRD:17096	HDGFRP3	HDGF-2|HDGF2|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding
19-PTNLD28-TUMOR_peak_82410	chr5	137078822	137078935	+	7.53076	NA	Intergenic	Intergenic	-7099	NM_017415	26249	Hs.655084	NM_017415	HPRD:09011	KLHL3	PHA2D	kelch-like family member 3	protein-coding
19-PTNLD28-TUMOR_peak_29165	chr13	114048311	114048532	+	7.53076	NA	Intergenic	CpG	-29958	NM_001286733	79774	Hs.745043	NM_024719	HPRD:17080	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21651	chr11	120403355	120403770	+	7.53076	NA	intron (NM_014619, intron 1 of 20)	intron (NM_014619, intron 1 of 20)	21097	NM_014619	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_46737	chr19	3556993	3557122	+	7.52986	NA	intron (NM_001287529, intron 1 of 9)	CpG	525	NM_174983	126321	Hs.656901	NM_021731	HPRD:12704	MFSD12	C19orf28|PP3501	major facilitator superfamily domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_106224	chr9	130753448	130753624	+	7.52986	NA	Intergenic	Intergenic	-10724	NM_001035254	399665	Hs.535972	NM_203305	HPRD:13262	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102, member A	protein-coding
19-PTNLD28-TUMOR_peak_91228	chr7	7037080	7037217	+	7.52986	NA	Intergenic	L2b|LINE|L2	99269	NR_034022	100131257	Hs.551110	NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_108151	chrX	47004102	47004205	+	7.52986	NA	promoter-TSS (NM_001204467)	promoter-TSS (NM_001204467)	456	NM_019056	54539	Hs.521969	NM_019056	HPRD:02323	NDUFB11	CI-ESSS|ESSS|NP17.3|Np15|P17.3	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa	protein-coding
19-PTNLD28-TUMOR_peak_101108	chr8	134190381	134190626	+	7.52986	NA	Intergenic	L1M5|LINE|L1	-12779	NM_003882	8840	Hs.492974	NM_003882		WISP1	CCN4|WISP1c|WISP1i|WISP1tc	WNT1 inducible signaling pathway protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64317	chr22	19015449	19015719	+	7.52986	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	5447	NR_026651	26222	Hs.681383	NR_026651		DGCR10	DGS-B	DiGeorge syndrome critical region gene 10 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_33796	chr15	59980870	59981014	+	7.52986	NA	intron (NM_004330, intron 1 of 9)	intron (NM_004330, intron 1 of 9)	700	NM_004330	663	Hs.592515	NM_004330	HPRD:04481	BNIP2	BNIP-2|NIP2	BCL2/adenovirus E1B 19kDa interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_64419	chr22	20229384	20229848	+	7.52986	NA	exon (NM_023004, exon 2 of 2)	exon (NM_023004, exon 2 of 2)	7118	NR_031618	100302118		NR_031618		MIR1286	MIRN1286|hsa-mir-1286	microRNA 1286	ncRNA
19-PTNLD28-TUMOR_peak_40403	chr17	17617294	17617462	+	7.52986	NA	intron (NM_030665, intron 1 of 5)	L3|LINE|CR1	32591	NM_030665	10743	Hs.655395	NM_030665	HPRD:07406	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
19-PTNLD28-TUMOR_peak_3902	chr1	60897108	60897196	+	7.52748	NA	Intergenic	Intergenic	-357710	NM_152377	127795	Hs.47385	NM_152377	HPRD:11338	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_46694	chr19	2983053	2983413	+	7.52748	NA	intron (NM_001143986, intron 5 of 16)	L2a|LINE|L2	5697	NM_001143986	79816	Hs.334507	NM_024760	HPRD:18195	TLE6	GRG6	transducin-like enhancer of split 6	protein-coding
19-PTNLD28-TUMOR_peak_26966	chr12	124886169	124886700	+	7.52748	NA	intron (NM_001077261, intron 16 of 47)	intron (NM_001077261, intron 16 of 47)	-64646	NR_106940	102466204		NR_106940		MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
19-PTNLD28-TUMOR_peak_3689	chr1	55416509	55416606	+	7.52748	NA	Intergenic	MamRep564|Unknown|Unknown	-29908	NM_182532	199964	Hs.663950	NM_182532	HPRD:14121	TMEM61	-	transmembrane protein 61	protein-coding
19-PTNLD28-TUMOR_peak_3151	chr1	45715438	45715551	+	7.52748	NA	Intergenic	ERVL-E-int|LTR|ERVL	-43244	NM_020883	57643	Hs.656613	NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger, SWIM-type containing 5	protein-coding
19-PTNLD28-TUMOR_peak_104838	chr9	99801913	99802036	+	7.52748	NA	promoter-TSS (NM_001333)	promoter-TSS (NM_001333)	-49	NM_001201575	1515	Hs.610096	NM_001333		CTSV	CATL2|CTSL2|CTSU	cathepsin V	protein-coding
19-PTNLD28-TUMOR_peak_4903	chr1	93546104	93546212	+	7.52748	NA	intron (NM_001164393, intron 1 of 12)	intron (NM_001164393, intron 1 of 12)	1366	NM_001164392	22823	Hs.31016	NM_007358	HPRD:14342	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_36456	chr16	14880217	14880374	+	7.52748	NA	Intergenic	Intergenic	35625	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP	nuclear pore complex interacting protein family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_95492	chr7	134274267	134274412	+	7.52700	NA	Intergenic	HERV17-int|LTR|ERV1	40490	NM_001080538	441282	Hs.729418	NM_001080538	ENSG00000227471	AKR1B15	AKR1B10L, AK1R1B7	aldo-keto reductase family 1, member B15	protein-coding
19-PTNLD28-TUMOR_peak_13277	chr10	45359641	45359737	+	7.52700	NA	intron (NR_033842, intron 2 of 7)	intron (NR_033842, intron 2 of 7)	-47075	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_92898	chr7	65216781	65216873	+	7.52700	NA	promoter-TSS (NR_103527)	promoter-TSS (NR_103527)	735	NR_003110	643253	Hs.488399	NR_003110		CCT6P1	CCT6-5P|CCT6AP1	chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_19556	chr11	67771050	67771174	+	7.52700	NA	intron (NM_030930, intron 2 of 10)	CpG-4463	483	NM_030930	81622	Hs.502989	NM_030930	HPRD:12191	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_101889	chr9	470927	471105	+	7.52700	NA	intron (NM_001256876, intron 2 of 15)	intron (NM_001256876, intron 2 of 15)	722	NM_001256876	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_65974	chr22	46466174	46466344	+	7.52184	NA	Intergenic	CpG	-15618	NR_027033	400931	Hs.235838	NM_207477	HPRD:16929	MIRLET7BHG	linc-Ppara	MIRLET7B host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_3629	chr1	54719958	54720103	+	7.52177	NA	intron (NM_018070, intron 6 of 16)	intron (NM_018070, intron 6 of 16)	17914	NR_103541	619518	Hs.591438	NM_001034847		SSBP3-AS1	C1orf191|MST128	SSBP3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27231	chr12	131958991	131959155	+	7.52177	NA	Intergenic	Intergenic	127058	NR_103736	338797	Hs.592007	NM_001025466		LOC338797	-	uncharacterized LOC338797	ncRNA
19-PTNLD28-TUMOR_peak_40936	chr17	29860627	29860817	+	7.52177	NA	3' UTR (NM_032932, exon 15 of 15)	3' UTR (NM_032932, exon 15 of 15)	-1179	NR_039877	100616248		NR_039877	miRBase:MI0017361	MIR4724	-	microRNA 4724	ncRNA
19-PTNLD28-TUMOR_peak_82368	chr5	135960652	135960889	+	7.52177	NA	Intergenic	Intergenic	-259606	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_46203	chr18	67956136	67956420	+	7.52177	NA	5' UTR (NM_004232, exon 1 of 2)	5' UTR (NM_004232, exon 1 of 2)	141	NM_004232	9306	Hs.44439	NM_004232	HPRD:05491	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
19-PTNLD28-TUMOR_peak_51083	chr2	10580971	10581179	+	7.52177	NA	intron (NM_001287188, intron 11 of 11)	intron (NM_001287188, intron 11 of 11)	5900	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
19-PTNLD28-TUMOR_peak_51096	chr2	10830060	10830247	+	7.52177	NA	promoter-TSS (NM_001261394)	promoter-TSS (NM_001261394)	-40	NR_048552	79954	Hs.222494	NM_024894	HPRD:07849	NOL10	PQBP5	nucleolar protein 10	protein-coding
19-PTNLD28-TUMOR_peak_98315	chr8	38896116	38896245	+	7.52177	NA	intron (NR_027878, intron 11 of 20)	L2a|LINE|L2	41675	NM_003816	8754	Hs.591852	NM_003816	HPRD:04091	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
19-PTNLD28-TUMOR_peak_6660	chr1	150141312	150141434	+	7.52177	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	19203	NM_016274	51177	Hs.438824	NM_016274	HPRD:12217	PLEKHO1	CKIP-1|OC120	pleckstrin homology domain containing, family O member 1	protein-coding
19-PTNLD28-TUMOR_peak_51206	chr2	12675174	12675297	+	7.52177	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-181763	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_74391	chr4	8941592	8941736	+	7.52177	NA	Intergenic	Intergenic	-9813	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_70190	chr3	122803103	122803195	+	7.51862	NA	intron (NR_028444, intron 1 of 15)	intron (NR_028444, intron 1 of 15)	17293	NR_028444	10954	Hs.477352	NM_006810	HPRD:08334	PDIA5	PDIR	protein disulfide isomerase family A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_81916	chr5	125797555	125797833	+	7.51754	NA	intron (NM_001146320, intron 1 of 12)	L2c|LINE|L2	-3093	NM_001146322	65983	Hs.363558	NM_023927	HPRD:11402	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_36280	chr16	11292861	11292965	+	7.51754	NA	Intergenic	Intergenic	57126	NM_003745	8651	Hs.50640	NM_003745	HPRD:04669	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_75816	chr4	77996402	77996763	+	7.51754	NA	intron (NM_006835, intron 1 of 6)	CpG	543	NM_006835	10983	Hs.518827	NM_006835	HPRD:16690	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
19-PTNLD28-TUMOR_peak_89114	chr6	111804290	111804452	+	7.51754	NA	promoter-TSS (NR_034111)	promoter-TSS (NR_034111)	-304	NR_034109	643749	Hs.486228	NR_034108	ENSG00000231889	TRAF3IP2-AS1	C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2	TRAF3IP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_1102	chr1	16918330	16918473	+	7.51754	NA	exon (NM_017940, exon 7 of 29)	exon (NM_017940, exon 7 of 29)	21699	NM_017940	55672	Hs.467587	NM_017940	HPRD:07946	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	neuroblastoma breakpoint family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_43930	chr17	79008625	79008756	+	7.51754	NA	promoter-TSS (NM_017451)	promoter-TSS (NM_017451)	-171	NR_026857	440465	Hs.448889	NM_001004336	HPRD:13544	BAIAP2-AS1	-	BAIAP2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_38304	chr16	67219311	67219563	+	7.51603	NA	intron (NM_178516, intron 9 of 13)	intron (NM_178516, intron 9 of 13)	-1554	NM_001040715	653319	Hs.651201	NM_001040715	ENSG00000196123	KIAA0895L	-	KIAA0895-like	protein-coding
19-PTNLD28-TUMOR_peak_6730	chr1	150997190	150997284	+	7.51603	NA	exon (NM_021222, exon 4 of 8)	exon (NM_021222, exon 4 of 8)	-11792	NM_001159642	149428	Hs.591473	NM_138278	HPRD:16557	BNIPL	BNIP-S|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding
19-PTNLD28-TUMOR_peak_80001	chr5	56110956	56111051	+	7.51603	NA	5' UTR (NM_005921, exon 1 of 20)	5' UTR (NM_005921, exon 1 of 20)	103	NM_005921	4214	Hs.653654	NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_68998	chr3	72131688	72131856	+	7.51594	NA	intron (NR_104116, intron 2 of 6)	intron (NR_104116, intron 2 of 6)	17834	NR_104116	285286	Hs.559386	NR_104116		LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
19-PTNLD28-TUMOR_peak_6354	chr1	145916005	145916094	+	7.51594	NA	intron (NR_104217, intron 2 of 17).2	MER58A|DNA|hAT-Charlie	29428	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_3473	chr1	51810354	51810472	+	7.51594	NA	intron (NM_001144832, intron 1 of 17)	CpG	375	NM_001144832	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
19-PTNLD28-TUMOR_peak_46725	chr19	3387914	3388141	+	7.51594	NA	intron (NM_001245005, intron 2 of 9)	CpG	21462	NM_001245004	4782	Hs.170131	NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I/C (CCAAT-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_64004	chr21	46336977	46337153	+	7.51594	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	-3885	NR_038315	100505746	Hs.661035	NR_038311	ENSG00000227039	ITGB2-AS1	-	ITGB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25014	chr12	65218304	65218853	+	7.51594	NA	5' UTR (NM_015279, exon 1 of 12)	5' UTR (NM_015279, exon 1 of 12)	226	NM_015279	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family, member 30	protein-coding
19-PTNLD28-TUMOR_peak_5789	chr1	116775051	116775152	+	7.51594	NA	Intergenic	Intergenic	120725	NM_152367	126868	Hs.376194	NM_152367	HPRD:08245	MAB21L3	C1orf161	mab-21-like 3 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_28870	chr13	101701958	101702194	+	7.51584	NA	intron (NR_047687, intron 5 of 7)	intron (NR_047687, intron 5 of 7)	-105458	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
19-PTNLD28-TUMOR_peak_63250	chr21	34807151	34807380	+	7.51584	NA	intron (NM_005534, intron 6 of 6)	intron (NM_005534, intron 6 of 6)	32063	NM_005534	3460	Hs.634632	NM_005534	HPRD:00956	IFNGR2	AF-1|IFGR2|IFNGT1	interferon gamma receptor 2 (interferon gamma transducer 1)	protein-coding
19-PTNLD28-TUMOR_peak_53225	chr2	67872864	67873061	+	7.51584	NA	Intergenic	Intergenic	179732	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_106391	chr9	132524923	132525082	+	7.51584	NA	Intergenic	Intergenic	-9658	NM_004878	9536	Hs.146688	NM_004878	HPRD:05528	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
19-PTNLD28-TUMOR_peak_63319	chr21	35955177	35955356	+	7.51584	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	30876	NM_001285389	1827	Hs.282326	NM_004414	HPRD:04226	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
19-PTNLD28-TUMOR_peak_82474	chr5	138052211	138052404	+	7.51584	NA	Intergenic	Intergenic	-36778	NM_001290309	1495	Hs.445981	NM_001903	HPRD:00285	CTNNA1	CAP102	catenin (cadherin-associated protein), alpha 1, 102kDa	protein-coding
19-PTNLD28-TUMOR_peak_30218	chr14	50827691	50827825	+	7.51584	NA	intron (NM_001282236, intron 2 of 8)	L1MB3|LINE|L1	34884	NM_004196	8814	Hs.280881	NM_004196		CDKL1	KKIALRE|P42	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding
19-PTNLD28-TUMOR_peak_63138	chr21	32881546	32881655	+	7.51584	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	49690	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_57763	chr2	201593441	201593529	+	7.51584	NA	intron (NR_001557, intron 3 of 30)	intron (NR_001557, intron 3 of 30)	6415	NR_037886	100507140	Hs.382116	NR_037886	ENSG00000237166	LOC100507140	-	uncharacterized LOC100507140	ncRNA
19-PTNLD28-TUMOR_peak_30881	chr14	68023932	68024143	+	7.51584	NA	exon (NM_020715, exon 4 of 29)	exon (NM_020715, exon 4 of 29)	24029	NM_020715	57475	Hs.594236	NM_020715	HPRD:17862	PLEKHH1	-	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_102008	chr9	3980896	3981026	+	7.51584	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	82315	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74667	chr4	17615824	17615980	+	7.51584	NA	promoter-TSS (NM_025205)	promoter-TSS (NM_025205)	-371	NM_025205	80306	Hs.731966	NM_025205		MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
19-PTNLD28-TUMOR_peak_20185	chr11	76784506	76784602	+	7.51584	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	6562	NM_004055	726	Hs.248153	NM_004055	HPRD:03963	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
19-PTNLD28-TUMOR_peak_40313	chr17	16189765	16189894	+	7.51584	NA	intron (NM_004278, intron 2 of 6)	intron (NM_004278, intron 2 of 6)	4501	NR_031698	100302124		NR_031698		MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
19-PTNLD28-TUMOR_peak_75326	chr4	54407282	54407370	+	7.51584	NA	intron (NM_001126328, intron 2 of 10)	AluSz|SINE|Alu	17110	NM_032622	84708	Hs.518760	NM_032622	HPRD:17287	LNX1	LNX|MPDZ|PDZRN2	ligand of numb-protein X 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_90466	chr6	166032515	166032611	+	7.51584	NA	intron (NR_045597, intron 1 of 22)	(TAGTG)n|Simple_repeat|Simple_repeat	43025	NM_001130690	10846	Hs.348762	NM_006661	HPRD:17828	PDE10A	HSPDE10A	phosphodiesterase 10A	protein-coding
19-PTNLD28-TUMOR_peak_97482	chr8	20796534	20796694	+	7.51584	NA	Intergenic	L2a|LINE|L2	-34883	NR_033894	286114	Hs.651884	NR_033894	ENSG00000253199	LOC286114	-	uncharacterized LOC286114	ncRNA
19-PTNLD28-TUMOR_peak_27676	chr13	30881636	30881731	+	7.51584	NA	promoter-TSS (NM_032116)	promoter-TSS (NM_032116)	-59	NM_032116	84056	Hs.243596	NM_032116	HPRD:13753	KATNAL1	-	katanin p60 subunit A-like 1	protein-coding
19-PTNLD28-TUMOR_peak_65879	chr22	44991918	44992193	+	7.51584	NA	Intergenic	Intergenic	26835	NR_028409	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_40592	chr17	19880804	19880983	+	7.51584	NA	intron (NM_007202, intron 1 of 14)	CpG	276	NM_007202	11216	Hs.642676	NM_007202	HPRD:05259	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
19-PTNLD28-TUMOR_peak_32095	chr14	102019225	102019391	+	7.51584	NA	non-coding (NR_002770, exon 1 of 1)	non-coding (NR_002770, exon 1 of 1)	2705	NR_002770	64150	Hs.525597	NR_002770		DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand/antisense RNA (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_78585	chr5	415467	415777	+	7.51584	NA	intron (NM_020731, intron 5 of 11)	intron (NM_020731, intron 5 of 11)	27636	NM_138464	116349	Hs.446702	NM_138464	ENSG00000221990	C5orf55	-	chromosome 5 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_37376	chr16	31880050	31880152	+	7.51584	NA	Intergenic	Intergenic	-4978	NM_003414	10308	Hs.460645	NM_003414	HPRD:06883	ZNF267	HZF2	zinc finger protein 267	protein-coding
19-PTNLD28-TUMOR_peak_47894	chr19	17445935	17446084	+	7.51209	NA	promoter-TSS (NM_020959)	promoter-TSS (NM_020959)	218	NM_001195422	84705	Hs.334885	NM_032620	HPRD:12255	GTPBP3	GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_50410	chr19	56116376	56116481	+	7.50981	NA	Intergenic	Intergenic	4698	NM_153219	147807	Hs.440291	NM_153219	HPRD:15817	ZNF524	-	zinc finger protein 524	protein-coding
19-PTNLD28-TUMOR_peak_10733	chr1	229477791	229477887	+	7.50315	NA	intron (NM_145257, intron 2 of 3)	intron (NM_145257, intron 2 of 3)	849	NM_145257	126731	Hs.585011	NM_145257	HPRD:14035	CCSAP	C1orf96|CSAP	centriole, cilia and spindle-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_35639	chr16	699672	699838	+	7.50315	NA	intron (NM_145294, intron 1 of 40)	CpG	392	NM_145294	197335	Hs.511903	NM_145294	HPRD:08311	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19	WD repeat domain 90	protein-coding
19-PTNLD28-TUMOR_peak_47268	chr19	11004778	11004973	+	7.50315	NA	intron (NM_199141, intron 1 of 15)	intron (NM_199141, intron 1 of 15)	22622	NM_199141	10498	Hs.323213	NM_199141	HPRD:09158	CARM1	PRMT4	coactivator-associated arginine methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_31246	chr14	74235729	74236001	+	7.50315	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-8864	NM_194278	91748	Hs.594157	NM_194278	HPRD:12648	ELMSAN1	C14orf117|C14orf43|LSR68|c14_5541	ELM2 and Myb/SANT-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49092	chr19	41102932	41103029	+	7.50315	NA	promoter-TSS (NM_001042544)	promoter-TSS (NM_001042544)	-161	NM_001042544	8425	Hs.466766	NM_003573	HPRD:05274	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_74890	chr4	30719733	30719864	+	7.50256	NA	Intergenic	CpG	-2232	NM_032456	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_18405	chr11	46408452	46408540	+	7.50256	NA	promoter-TSS (NM_000741)	promoter-TSS (NM_000741)	-389	NM_000741	1132	Hs.248100	NM_000741	HPRD:00330	CHRM4	HM4|M4R	cholinergic receptor, muscarinic 4	protein-coding
19-PTNLD28-TUMOR_peak_47220	chr19	10541322	10541514	+	7.50256	NA	promoter-TSS (NM_001111308)	promoter-TSS (NM_001111308)	-103	NM_001111308	5141	Hs.89901	NM_006202	HPRD:02527	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_65585	chr22	39894310	39894510	+	7.50256	NA	Intergenic	Intergenic	-3874	NM_019008	54471	Hs.728085	NM_019008	HPRD:13371	MIEF1	HSU79252|MID51|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_39360	chr16	88599803	88600173	+	7.50256	NA	exon (NM_153813, exon 10 of 10)	exon (NM_153813, exon 10 of 10)	-36801	NM_144604	124245	Hs.93670	NM_144604	HPRD:11232	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
19-PTNLD28-TUMOR_peak_64529	chr22	21563982	21564159	+	7.50256	NA	Intergenic	Intergenic	42878	NR_108107	642633		NM_201565		FAM230B	-	family with sequence similarity 230, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_91849	chr7	30549067	30549159	+	7.50256	NA	Intergenic	MER11D|LTR|ERVK	-4656	NM_001199817	79017	Hs.530024	NM_024051	HPRD:12912	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_7087	chr1	154579682	154579808	+	7.50042	NA	promoter-TSS (NM_001193495)	promoter-TSS (NM_001193495)	-969	NM_001193495	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_327	chr1	5728195	5728302	+	7.49807	NA	Intergenic	Intergenic	104117	NR_039612	100616489		NR_039612	miRBase:MI0016753	MIR4417	-	microRNA 4417	ncRNA
19-PTNLD28-TUMOR_peak_8567	chr1	180535291	180535463	+	7.49807	NA	non-coding (NR_125716, exon 3 of 3)	non-coding (NR_125716, exon 3 of 3)	7267	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_33881	chr15	62942137	62942510	+	7.49807	NA	exon (NM_015059, exon 2 of 56)	exon (NM_015059, exon 2 of 56)	2813	NM_015059	83660	Hs.569438	NM_015059	HPRD:09555	TLN2	ILWEQ	talin 2	protein-coding
19-PTNLD28-TUMOR_peak_47946	chr19	17866452	17866540	+	7.49807	NA	intron (NM_015122, intron 4 of 28)	intron (NM_015122, intron 4 of 28)	4210	NM_001161359	23149	Hs.96485	NM_015122	HPRD:16887	FCHO1	-	FCH domain only 1	protein-coding
19-PTNLD28-TUMOR_peak_11928	chr10	7619120	7619441	+	7.49807	NA	intron (NM_001001851, intron 9 of 11)	L3|LINE|CR1	42356	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_53284	chr2	69390260	69390416	+	7.49807	NA	intron (NM_053034, intron 13 of 14)	intron (NM_053034, intron 13 of 14)	59524	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
19-PTNLD28-TUMOR_peak_106745	chr9	139377516	139377627	+	7.49663	NA	promoter-TSS (NM_152571)	promoter-TSS (NM_152571)	-64	NM_014866	9919	Hs.522500	NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_105214	chr9	110401290	110401405	+	7.49663	NA	Intergenic	Intergenic	-149300	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_46927	chr19	6723115	6723278	+	7.49663	NA	Intergenic	Intergenic	-2534	NM_000064	718	Hs.529053	NM_000064	HPRD:00400	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement component 3	protein-coding
19-PTNLD28-TUMOR_peak_8533	chr1	179779099	179779228	+	7.49508	NA	intron (NM_173509, intron 2 of 4)	intron (NM_173509, intron 2 of 4)	66865	NM_173509	148753	Hs.729631	NM_173509	HPRD:14454	FAM163A	C1orf76|NDSP	family with sequence similarity 163, member A	protein-coding
19-PTNLD28-TUMOR_peak_69857	chr3	112930734	112930853	+	7.49508	NA	promoter-TSS (NM_033254)	promoter-TSS (NM_033254)	-582	NM_033254	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_45271	chr18	34899574	34899981	+	7.49249	NA	intron (NM_001025089, intron 3 of 11)	intron (NM_001025089, intron 3 of 11)	246223	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_80710	chr5	73935846	73936022	+	7.49090	NA	promoter-TSS (NM_001292004)	promoter-TSS (NM_001292004)	86	NM_001292004	3074	Hs.69293	NM_000521	HPRD:06043	HEXB	ENC-1AS|HEL-248	hexosaminidase B (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_51792	chr2	28032871	28033138	+	7.48882	NA	intron (NM_001287580, intron 8 of 8)	intron (NM_001287580, intron 8 of 8)	38420	NM_145330	9553	Hs.515879	NM_004891	HPRD:14753	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L	mitochondrial ribosomal protein L33	protein-coding
19-PTNLD28-TUMOR_peak_55833	chr2	133372737	133372861	+	7.48882	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	55682	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81263	chr5	96212345	96212477	+	7.48882	NA	intron (NM_022350, intron 1 of 18)	intron (NM_022350, intron 1 of 18)	767	NM_001130140	64167	Hs.482910	NM_022350	HPRD:14306	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_91797	chr7	29382526	29382752	+	7.48882	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-134053	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
19-PTNLD28-TUMOR_peak_29747	chr14	32413730	32414077	+	7.48882	NA	Intergenic	Intergenic	132002	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_54216	chr2	95971152	95971337	+	7.48882	NA	intron (NM_013434, intron 1 of 8)	L1MD2|LINE|L1	8172	NM_013434	30818	Hs.437376	NM_013434	HPRD:05232	KCNIP3	CSEN|DREAM|KCHIP3	Kv channel interacting protein 3, calsenilin	protein-coding
19-PTNLD28-TUMOR_peak_256	chr1	2516966	2517268	+	7.48194	NA	promoter-TSS (NR_036638)	promoter-TSS (NR_036638)	-782	NR_036637	127281	Hs.462033	NM_152371	HPRD:14513	FAM213B	C1orf93	family with sequence similarity 213, member B	protein-coding
19-PTNLD28-TUMOR_peak_86412	chr6	29893251	29893370	+	7.48194	NA	non-coding (NR_001317, exon 1 of 1).7	non-coding (NR_001317, exon 1 of 1).7	1682	NR_001317	80868	Hs.661198	NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42029	chr17	46145954	46146168	+	7.48093	NA	Intergenic	Intergenic	20375	NM_003204	4779	Hs.514284	NM_003204	HPRD:01223	NFE2L1	LCR-F1|NRF1|TCF11	nuclear factor, erythroid 2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_108634	chrX	68372336	68372438	+	7.48093	NA	Intergenic	Intergenic	12978	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_4427	chr1	77470681	77470771	+	7.48093	NA	intron (NM_030965, intron 2 of 4)	L1PA2|LINE|L1	-55102	NR_106978	102466995		NR_106978		MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
19-PTNLD28-TUMOR_peak_34693	chr15	78423733	78424256	+	7.48093	NA	promoter-TSS (NM_001301224)	promoter-TSS (NM_001301224)	-117	NM_006383	10518	Hs.129867	NM_006383	HPRD:05713	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
19-PTNLD28-TUMOR_peak_5141	chr1	99968954	99969130	+	7.48093	NA	Intergenic	Intergenic	-142389	NM_017734	54873	Hs.483993	NM_017734	HPRD:06673	PALMD	C1orf11|PALML	palmdelphin	protein-coding
19-PTNLD28-TUMOR_peak_31616	chr14	89951726	89951862	+	7.48093	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	68096	NR_036500	400236	Hs.585207	NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107692	chrX	17805226	17805453	+	7.48093	NA	Intergenic	L1PA3|LINE|L1	49770	NM_001037536	6322	Hs.109655	NM_006746	HPRD:02205	SCML1	-	sex comb on midleg-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_69089	chr3	73815495	73815619	+	7.48093	NA	Intergenic	Intergenic	-141485	NM_015009	23024	Hs.743998	NM_015009	HPRD:15115	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_94073	chr7	96582339	96582471	+	7.48093	NA	Intergenic	Intergenic	-52885	NM_005222	1750	Hs.249196	NM_005222	HPRD:02493	DLX6	-	distal-less homeobox 6	protein-coding
19-PTNLD28-TUMOR_peak_53262	chr2	68870434	68871021	+	7.48093	NA	Intergenic	CpG	-2227	NM_138964	10887	Hs.683430	NM_138964	HPRD:08452	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_100327	chr8	120079885	120079983	+	7.48093	NA	intron (NM_006438, intron 1 of 5)	intron (NM_006438, intron 1 of 5)	510	NM_006438	10584	Hs.176615	NM_006438		COLEC10	CLL1	collectin sub-family member 10 (C-type lectin)	protein-coding
19-PTNLD28-TUMOR_peak_64951	chr22	28901840	28901979	+	7.48093	NA	intron (NM_001145418, intron 2 of 22)	L1PA11|LINE|L1	46052	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
19-PTNLD28-TUMOR_peak_99044	chr8	67390061	67390202	+	7.48093	NA	Intergenic	MIR|SINE|MIR	-15360	NM_152765	254778	Hs.268869	NM_152765	HPRD:14565	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_91447	chr7	19014550	19014708	+	7.48093	NA	intron (NM_178423, intron 24 of 25)	intron (NM_178423, intron 24 of 25)	142666	NM_000474	7291	Hs.66744	NM_000474	HPRD:03374	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_8395	chr1	176965745	176965985	+	7.48093	NA	intron (NM_001286164, intron 8 of 22)	intron (NM_001286164, intron 8 of 22)	32716	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	ncRNA
19-PTNLD28-TUMOR_peak_37710	chr16	49654333	49654517	+	7.48093	NA	intron (NM_015069, intron 5 of 7)	intron (NM_015069, intron 5 of 7)	202224	NM_015069	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_66428	chr3	9140441	9140673	+	7.48093	NA	intron (NM_001033117, intron 3 of 21)	intron (NM_001033117, intron 3 of 21)	-93620	NR_121664	101927416	Hs.475364	NR_121663		LOC101927416	-	uncharacterized LOC101927416	ncRNA
19-PTNLD28-TUMOR_peak_11647	chr10	1368876	1368998	+	7.48093	NA	intron (NM_018702, intron 3 of 9)	CpG	163229	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
19-PTNLD28-TUMOR_peak_37505	chr16	33760554	33760649	+	7.48093	NA	Intergenic	L1HS|LINE|L1	-197358	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76P	RNU6-76	RNA, U6 small nuclear 76, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_101216	chr8	135584876	135585049	+	7.48093	NA	intron (NR_110323, intron 10 of 16)	MARNA|DNA|TcMar-Mariner	-25352	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87515	chr6	42647184	42647338	+	7.48093	NA	intron (NM_015255, intron 41 of 46)	intron (NM_015255, intron 41 of 46)	43097	NM_000322	5961	Hs.654489	NM_000322	HPRD:01553	PRPH2	AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2 (retinal degeneration, slow)	protein-coding
19-PTNLD28-TUMOR_peak_97670	chr8	23261664	23261789	+	7.48093	NA	promoter-TSS (NM_002318)	promoter-TSS (NM_002318)	-4	NM_002318	4017	Hs.626637	NM_002318	HPRD:09446	LOXL2	LOR2|WS9-14	lysyl oxidase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_49069	chr19	40898936	40899030	+	7.48093	NA	TTS (NM_020956)	TTS (NM_020956)	-2889	NM_144685	147746	Hs.79363	NM_144685	HPRD:13652	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_88705	chr6	89931796	89932020	+	7.48093	NA	intron (NM_001267582, intron 1 of 11)	MLT1J1|LTR|ERVL-MaLR	-4412	NM_001256704	2569	Hs.99927	NM_002042	HPRD:15921	GABRR1	-	gamma-aminobutyric acid (GABA) A receptor, rho 1	protein-coding
19-PTNLD28-TUMOR_peak_105	chr1	1085665	1085759	+	7.48093	NA	Intergenic	Intergenic	13315	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
19-PTNLD28-TUMOR_peak_68274	chr3	51429469	51429684	+	7.48023	NA	exon (NM_013286, exon 1 of 1)	exon (NM_013286, exon 1 of 1)	877	NM_013286	29890	Hs.118738	NM_013286	HPRD:11486	RBM15B	HUMAGCGB|OTT3	RNA binding motif protein 15B	protein-coding
19-PTNLD28-TUMOR_peak_49402	chr19	45982347	45982450	+	7.48023	NA	Intergenic	Intergenic	11145	NM_006732	2354	Hs.590958	NM_006732	HPRD:01270	FOSB	AP-1|G0S3|GOS3|GOSB	FBJ murine osteosarcoma viral oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_37169	chr16	29832567	29832741	+	7.47946	NA	3' UTR (NM_024516, exon 3 of 3)	3' UTR (NM_024516, exon 3 of 3)	939	NM_005115	9961	Hs.632177	NM_005115	HPRD:05475	MVP	LRP|VAULT1	major vault protein	protein-coding
19-PTNLD28-TUMOR_peak_52495	chr2	45062249	45062428	+	7.47882	NA	Intergenic	Intergenic	106308	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	-	SIX3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9785	chr1	207008133	207008311	+	7.47882	NA	intron (NM_013371, intron 2 of 6)	intron (NM_013371, intron 2 of 6)	6000	NM_013371	29949	Hs.661017	NM_013371	HPRD:05747	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
19-PTNLD28-TUMOR_peak_57328	chr2	183481572	183481798	+	7.47882	NA	Intergenic	Intergenic	-94113	NM_001258312	5136	Hs.191046	NM_005019	HPRD:01387	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_52600	chr2	47029247	47029340	+	7.47882	NA	Intergenic	Intergenic	-14514	NR_034099	388948	Hs.728895	NR_034099	ENSG00000222005	LINC01118	-	long intergenic non-protein coding RNA 1118	ncRNA
19-PTNLD28-TUMOR_peak_35937	chr16	3704337	3704448	+	7.47882	NA	5' UTR (NM_005223, exon 1 of 9)	5' UTR (NM_005223, exon 1 of 9)	1452	NM_005223	1773	Hs.629638	NM_005223		DNASE1	DNL1|DRNI	deoxyribonuclease I	protein-coding
19-PTNLD28-TUMOR_peak_863	chr1	12769345	12769581	+	7.47882	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-6655	NM_001103170	126767	Hs.464705	NM_001103169	ENSG00000188984	AADACL3	-	arylacetamide deacetylase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_47609	chr19	14307006	14307154	+	7.47882	NA	intron (NM_001008701, intron 1 of 23)	L2a|LINE|L2	9917	NM_001008701	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_53976	chr2	88027639	88028010	+	7.47882	NA	Intergenic	MER52-int|LTR|ERV1	-19782	NM_002665	5342	Hs.652169	NM_002665		PLGLB2	PLGP1	plasminogen-like B2	protein-coding
19-PTNLD28-TUMOR_peak_64644	chr22	23030252	23030375	+	7.47882	NA	Intergenic	ERVL-B4-int|LTR|ERVL	41531	NM_199127	91227	Hs.450000	NM_080839		GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
19-PTNLD28-TUMOR_peak_42057	chr17	46598321	46598436	+	7.47882	NA	Intergenic	Intergenic	9894	NM_002144	3211	Hs.99992	NM_002144		HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
19-PTNLD28-TUMOR_peak_48833	chr19	38085126	38085311	+	7.47833	NA	promoter-TSS (NM_001172226)	promoter-TSS (NM_001172226)	475	NM_016536	51276	Hs.590944	NM_016536	HPRD:15850	ZNF571	-	zinc finger protein 571	protein-coding
19-PTNLD28-TUMOR_peak_78877	chr5	10301601	10301938	+	7.47833	NA	intron (NM_138809, intron 1 of 5)	AluSx1|SINE|Alu	6399	NM_138809	134147	Hs.192586	NM_138809		CMBL	JS-1	carboxymethylenebutenolidase homolog (Pseudomonas)	protein-coding
19-PTNLD28-TUMOR_peak_98491	chr8	42513448	42513541	+	7.47833	NA	Intergenic	MER4D|LTR|ERV1	-39068	NM_000749	1142	Hs.654576	NM_000749	HPRD:00336	CHRNB3	-	cholinergic receptor, nicotinic, beta 3 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_93467	chr7	75852692	75852849	+	7.47833	NA	intron (NM_001291831, intron 1 of 15)	intron (NM_001291831, intron 1 of 15)	21559	NM_001291831	222183	Hs.511025	NM_001039212	HPRD:08219	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
19-PTNLD28-TUMOR_peak_39437	chr16	89313285	89313702	+	7.47833	NA	Intergenic	CpG	29382	NM_182531	197320	Hs.647385	NM_182531	HPRD:08111	ZNF778	-	zinc finger protein 778	protein-coding
19-PTNLD28-TUMOR_peak_52006	chr2	31556570	31556676	+	7.47833	NA	TTS (NM_000379)	TTS (NM_000379)	80988	NM_000379	7498	Hs.250	NM_000379	HPRD:06363	XDH	XO|XOR	xanthine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_43840	chr17	77813230	77813364	+	7.47736	NA	promoter-TSS (NM_003655)	promoter-TSS (NM_003655)	-84	NM_003655	8535	Hs.405046	NM_003655	HPRD:04357	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_41650	chr17	41746467	41746636	+	7.47736	NA	Intergenic	AluSz6|SINE|Alu	-7289	NM_001040002	4222	Hs.438	NM_004527	HPRD:02537	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_9657	chr1	205569407	205569520	+	7.47678	NA	intron (NM_181644, intron 9 of 9)	intron (NM_181644, intron 9 of 9)	31351	NM_181644	148808	Hs.567714	NM_181644	HPRD:13228	MFSD4	UNQ3064	major facilitator superfamily domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_63696	chr21	43172471	43172591	+	7.47678	NA	intron (NM_020639, intron 2 of 7)	intron (NM_020639, intron 2 of 7)	-5530	NR_106872	102465488		NR_106872		MIR6814	hsa-mir-6814	microRNA 6814	ncRNA
19-PTNLD28-TUMOR_peak_90936	chr7	2664296	2664451	+	7.47678	NA	Intergenic	Intergenic	-7230	NM_025250	80727	Hs.440899	NM_025250	HPRD:12333	TTYH3	-	tweety family member 3	protein-coding
19-PTNLD28-TUMOR_peak_40803	chr17	27070926	27071088	+	7.47586	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-16	NM_004295	9618	Hs.8375	NM_004295	HPRD:03915	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_23286	chr12	17955832	17956124	+	7.47333	NA	Intergenic	Intergenic	129745	NR_039770	100616279		NR_039770		MIR3974	-	microRNA 3974	ncRNA
19-PTNLD28-TUMOR_peak_43994	chr17	79626134	79626328	+	7.47333	NA	Intergenic	AluJb|SINE|Alu	-2624	NM_002602	5148	Hs.654482	NM_002602	HPRD:08914	PDE6G	PDEG|RP57	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding
19-PTNLD28-TUMOR_peak_106343	chr9	132008840	132009110	+	7.47333	NA	Intergenic	Intergenic	-35720	NR_121587	101929331	Hs.522428	NR_121587	ENSG00000224307	LOC101929331	-	uncharacterized LOC101929331	ncRNA
19-PTNLD28-TUMOR_peak_30871	chr14	67878808	67879136	+	7.47333	NA	promoter-TSS (NM_016445)	promoter-TSS (NM_016445)	-144	NM_016445	26499	Hs.170473	NM_016445	HPRD:12151	PLEK2	-	pleckstrin 2	protein-coding
19-PTNLD28-TUMOR_peak_68513	chr3	56847163	56847279	+	7.47333	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-11226	NM_019555	50650	Hs.476402	NM_019555	HPRD:12480	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_54928	chr2	111943091	111943426	+	7.47333	NA	Intergenic	Intergenic	64767	NM_001204111	10018	Hs.469658	NM_006538	HPRD:04828	BCL2L11	BAM|BIM|BOD	BCL2-like 11 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_64673	chr22	23562721	23562841	+	7.47333	NA	intron (NM_004327, intron 1 of 22)	intron (NM_004327, intron 1 of 22)	40229	NM_004327	613	Hs.517461	NM_004327	HPRD:01044	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
19-PTNLD28-TUMOR_peak_107360	chrX	2006356	2006528	+	7.47333	NA	Intergenic	Intergenic	272416	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_337	chr1	6094424	6094544	+	7.47333	NA	5' UTR (NM_001199860, exon 1 of 16)	5' UTR (NM_001199860, exon 1 of 16)	136	NM_001199860	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_6335	chr1	145698077	145698177	+	7.47333	NA	intron (NR_103845, intron 3 of 3)	intron (NR_103845, intron 3 of 3)	17512	NR_103845	11126	Hs.488237	NM_007053	HPRD:06833	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
19-PTNLD28-TUMOR_peak_34388	chr15	72612452	72612923	+	7.47333	NA	promoter-TSS (NM_052840)	promoter-TSS (NM_052840)	-162	NM_052840	60677	Hs.348342	NM_052840	HPRD:10691	CELF6	BRUNOL6	CUGBP, Elav-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_58526	chr2	220492252	220492521	+	7.47333	NA	promoter-TSS (NM_005070)	promoter-TSS (NM_005070)	94	NR_048551	6508	Hs.1176	NM_005070	HPRD:00109	SLC4A3	AE3|SLC2C	solute carrier family 4 (anion exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_82010	chr5	128339036	128339168	+	7.47333	NA	intron (NM_001017372, intron 4 of 9)	MER101|LTR|ERV1	37889	NM_001017372	28965	Hs.49765	NM_014031	HPRD:09173	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_34400	chr15	72963296	72963456	+	7.47333	NA	Intergenic	Intergenic	15114	NR_002780	123346	Hs.434111	NR_002780	ENSG00000175202	HIGD2B	HIGD2BP	HIG1 hypoxia inducible domain family, member 2B	pseudo
19-PTNLD28-TUMOR_peak_14148	chr10	72482677	72482876	+	7.47333	NA	intron (NM_080722, intron 4 of 21)	L1MC3|LINE|L1	50217	NM_080722	140766	Hs.352156	NM_080722	HPRD:06329	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif, 14	protein-coding
19-PTNLD28-TUMOR_peak_28067	chr13	44888035	44888134	+	7.47333	NA	Intergenic	Intergenic	-59894	NM_001010897	387923	Hs.377972	NM_001010897	HPRD:16590	SERP2	C13orf21|bA269C23.1	stress-associated endoplasmic reticulum protein family member 2	protein-coding
19-PTNLD28-TUMOR_peak_98476	chr8	42342606	42342776	+	7.47333	NA	intron (NM_006749, intron 1 of 10)	intron (NM_006749, intron 1 of 10)	16287	NM_001257180	6575	Hs.653173	NM_006749	HPRD:08865	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1	solute carrier family 20 (phosphate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_70293	chr3	124052838	124053050	+	7.47333	NA	intron (NM_001024660, intron 8 of 59)	intron (NM_001024660, intron 8 of 59)	-40235	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_28946	chr13	106466651	106467242	+	7.47333	NA	Intergenic	Intergenic	107767	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_3244	chr1	46998641	46999009	+	7.47307	NA	Intergenic	CpG	-5543	NR_038403	100507423	Hs.601863	NR_038403	ENSG00000269956	MKNK1-AS1	-	MKNK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_7721	chr1	161696501	161696863	+	7.47307	NA	exon (NM_001288831, exon 5 of 6)	exon (NM_001288831, exon 5 of 6)	4239	NM_001288829	127943	Hs.517422	NM_001002901	HPRD:08093	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FcRY	Fc receptor-like B	protein-coding
19-PTNLD28-TUMOR_peak_70376	chr3	124847948	124848154	+	7.47307	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	22345	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_1219	chr1	19638266	19638437	+	7.47307	NA	promoter-TSS (NM_001040125)	promoter-TSS (NM_001040125)	289	NM_003689	8574	Hs.571886	NM_003689		AKR7A2	AFAR|AFAR1|AFB1-AR1|AKR7	aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)	protein-coding
19-PTNLD28-TUMOR_peak_66282	chr3	5055042	5055218	+	7.47307	NA	Intergenic	Intergenic	34033	NM_003670	8553	Hs.744856	NM_003670	HPRD:16050	BHLHE40	BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14	basic helix-loop-helix family, member e40	protein-coding
19-PTNLD28-TUMOR_peak_9139	chr1	200589528	200589647	+	7.46904	NA	5' UTR (NM_014875, exon 1 of 30)	5' UTR (NM_014875, exon 1 of 30)	275	NM_014875	9928	Hs.3104	NM_014875	HPRD:06605	KIF14	-	kinesin family member 14	protein-coding
19-PTNLD28-TUMOR_peak_28907	chr13	103499128	103499268	+	7.46904	NA	intron (NM_000123, intron 1 of 14)	MIR|SINE|MIR	1007	NM_000123	2073	Hs.258429	NM_000123	HPRD:00595	ERCC5	COFS3|ERCM2|UVDR|XPG|XPGC	excision repair cross-complementation group 5	protein-coding
19-PTNLD28-TUMOR_peak_57120	chr2	176987963	176988053	+	7.46904	NA	exon (NM_014213, exon 1 of 2)	exon (NM_014213, exon 1 of 2)	595	NM_014213	3235	Hs.236646	NM_014213		HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding
19-PTNLD28-TUMOR_peak_39692	chr17	2286020	2286175	+	7.46904	NA	Intergenic	Intergenic	18161	NM_020310	4335	Hs.626579	NM_020310	HPRD:04331	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
19-PTNLD28-TUMOR_peak_47674	chr19	14887931	14888035	+	7.46904	NA	promoter-TSS (NM_001271052)	promoter-TSS (NM_001271052)	-244	NM_001271052	30817	Hs.531619	NM_013447	HPRD:07308	EMR2	CD312	egf-like module containing, mucin-like, hormone receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_22073	chr11	128778591	128778684	+	7.46904	NA	intron (NM_000890, intron 1 of 2)	intron (NM_000890, intron 1 of 2)	-2511	NR_045767	219833	Hs.689860	NM_145013	HPRD:11344	C11orf45	-	chromosome 11 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_9206	chr1	201330883	201331010	+	7.46904	NA	intron (NM_001001432, intron 11 of 13)	intron (NM_001001432, intron 11 of 13)	15882	NM_001276346	7139	Hs.533613	NM_000364	HPRD:01844	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T type 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_42232	chr17	48439497	48439590	+	7.46904	NA	TTS (NM_022167)	TTS (NM_022167)	11019	NM_016504	51264	Hs.7736	NM_016504	HPRD:14750	MRPL27	L27mt	mitochondrial ribosomal protein L27	protein-coding
19-PTNLD28-TUMOR_peak_1018	chr1	16125608	16125761	+	7.46094	NA	Intergenic	Intergenic	8510	NM_001089591	440567	Hs.568229	NM_001089591		UQCRHL	-	ubiquinol-cytochrome c reductase hinge protein-like	protein-coding
19-PTNLD28-TUMOR_peak_46064	chr18	59619719	59619810	+	7.45635	NA	Intergenic	Intergenic	-59460	NM_173557	220441	Hs.165062	NM_173557		RNF152	-	ring finger protein 152	protein-coding
19-PTNLD28-TUMOR_peak_72789	chr3	184243281	184243506	+	7.45635	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-36194	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_92042	chr7	36701215	36701373	+	7.45635	NA	intron (NM_001177506, intron 3 of 21)	intron (NM_001177506, intron 3 of 21)	-61568	NR_046764	100874264	Hs.690994	NR_046764		AOAH-IT1	-	AOAH intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_87712	chr6	44617064	44617405	+	7.45635	NA	Intergenic	L1MC3|LINE|L1	213856	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_1284	chr1	20834035	20834393	+	7.45635	NA	intron (NM_024544, intron 1 of 3)	intron (NM_024544, intron 1 of 3)	460	NM_024544	79594	Hs.10101	NM_024544	HPRD:07799	MUL1	C1orf166|GIDE|MAPL|MULAN|RNF218	mitochondrial E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_110215	chrY	13489686	13489779	+	7.45445	NA	Intergenic	LSAU|Satellite|Satellite	1043657	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_50192	chr19	53691068	53691311	+	7.45410	NA	intron (NM_024733, intron 1 of 3)	SVA_E|Other|Other	5430	NM_024733	79788	Hs.745230	NM_024733	HPRD:07856	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
19-PTNLD28-TUMOR_peak_83937	chr5	171538330	171538607	+	7.45410	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	76878	NM_005990	6793	Hs.744005	NM_005990	HPRD:06796	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_52677	chr2	47858577	47858685	+	7.45410	NA	Intergenic	MIR3|SINE|MIR	-61161	NM_022055	56660	Hs.591586	NM_022055		KCNK12	K2p12.1|THIK-2|THIK2	potassium channel, subfamily K, member 12	protein-coding
19-PTNLD28-TUMOR_peak_68130	chr3	49499819	49499944	+	7.45410	NA	Intergenic	Intergenic	-6255	NM_001177643	1605	Hs.76111	NM_004393	HPRD:00546	DAG1	156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9	dystroglycan 1 (dystrophin-associated glycoprotein 1)	protein-coding
19-PTNLD28-TUMOR_peak_106037	chr9	127045104	127045341	+	7.45040	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	-9028	NM_001166171	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_50630	chr1_gl000191_random	29824	29955	+	7.45040	NA	Intergenic	CpG	20392	NM_006625	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_97616	chr8	22551888	22552019	+	7.45040	NA	Intergenic	CpG-25499	-1138	NM_004430	1960	Hs.534313	NM_004430	HPRD:03881	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
19-PTNLD28-TUMOR_peak_107981	chrX	39872680	39873393	+	7.45023	NA	Intergenic	CpG	83683	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_106758	chr9	139470848	139470954	+	7.45023	NA	Intergenic	Intergenic	28607	NR_121577	101928483	Hs.170035	NR_121577		MIR4674HG	-	MIR4674 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42699	chr17	58192823	58193005	+	7.45023	NA	Intergenic	Intergenic	-12634	NR_027408	653653	Hs.631741	NR_027408		LOC653653	-	adaptor-related protein complex 1, sigma 2 subunit pseudogene	pseudo
19-PTNLD28-TUMOR_peak_6638	chr1	149889336	149889594	+	7.45023	NA	promoter-TSS (NM_014849)	promoter-TSS (NM_014849)	-31	NM_014849	9900	Hs.516153	NM_014849	HPRD:08922	SV2A	SV2	synaptic vesicle glycoprotein 2A	protein-coding
19-PTNLD28-TUMOR_peak_75460	chr4	57978436	57978733	+	7.45023	NA	intron (NR_034081, intron 1 of 4)	intron (NR_034081, intron 1 of 4)	-2033	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_75459	chr4	57976383	57976600	+	7.45023	NA	promoter-TSS (NM_001553)	promoter-TSS (NM_001553)	60	NM_001553	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_10582	chr1	228079974	228080082	+	7.44507	NA	Intergenic	Intergenic	49356	NR_049806	100847072		NR_049806		MIR5008	-	microRNA 5008	ncRNA
19-PTNLD28-TUMOR_peak_11187	chr1	237238619	237238828	+	7.44197	NA	intron (NM_001035, intron 1 of 104)	L1HS|LINE|L1	33021	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_85951	chr6	24316374	24316539	+	7.44197	NA	intron (NM_016356, intron 2 of 9)	L2a|LINE|L2	-40675	NM_181337	353219	Hs.697888	NM_181337	HPRD:09741	KAAG1	RU2AS	kidney associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_18063	chr11	35551848	35551976	+	7.44197	NA	promoter-TSS (NM_001282675)	promoter-TSS (NM_001282675)	-64	NM_001282675	25891	Hs.55044	NM_015430	HPRD:07104	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
19-PTNLD28-TUMOR_peak_48669	chr19	35782430	35782556	+	7.44197	NA	promoter-TSS (NM_001199216)	promoter-TSS (NM_001199216)	-496	NM_002361	4099	Hs.643440	NM_002361	HPRD:01160	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4A	myelin associated glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_275	chr1	3411411	3411537	+	7.44197	NA	intron (NM_001409, intron 30 of 36)	intron (NM_001409, intron 30 of 36)	40327	NM_014448	27237	Hs.87435	NM_014448	HPRD:12478	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
19-PTNLD28-TUMOR_peak_42957	chr17	63394289	63394532	+	7.44197	NA	Intergenic	Intergenic	163330	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_6470	chr1	147457711	147457800	+	7.44197	NA	intron (NM_016334, intron 10 of 13)	MER58A|DNA|hAT-Charlie	29433	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_40426	chr17	17781321	17781565	+	7.44197	NA	intron (NM_001033551, intron 6 of 13)	intron (NM_001033551, intron 6 of 13)	-41118	NM_004176	6720	Hs.592123	NM_004176	HPRD:01701	SREBF1	SREBP-1c|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_66685	chr3	12770804	12771080	+	7.44197	NA	Intergenic	Intergenic	29866	NM_001284407	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_30824	chr14	65463974	65464089	+	7.44197	NA	intron (NM_002028, intron 1 of 11)	LTR8A|LTR|ERV1	10524	NM_002028	2342	Hs.325531	NM_002028	HPRD:00608	FNTB	FPTB	farnesyltransferase, CAAX box, beta	protein-coding
19-PTNLD28-TUMOR_peak_98468	chr8	42270458	42270637	+	7.44197	NA	Intergenic	Intergenic	21268	NM_001135694	7419	Hs.699301	NM_005662	HPRD:06750	VDAC3	HD-VDAC3|VDAC-3	voltage-dependent anion channel 3	protein-coding
19-PTNLD28-TUMOR_peak_3429	chr1	50489025	50489178	+	7.44197	NA	intron (NM_032785, intron 1 of 13)	intron (NM_032785, intron 1 of 13)	525	NM_032785	84871	Hs.551844	NM_032785	HPRD:07487	AGBL4	CCP6	ATP/GTP binding protein-like 4	protein-coding
19-PTNLD28-TUMOR_peak_1772	chr1	27728962	27729066	+	7.44197	NA	Intergenic	Intergenic	9866	NM_005281	2827	Hs.66542	NM_005281	HPRD:02587	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_12673	chr10	30003452	30003702	+	7.44197	NA	intron (NM_003174, intron 1 of 35)	intron (NM_003174, intron 1 of 35)	21153	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_25410	chr12	79257340	79257439	+	7.44197	NA	promoter-TSS (NM_001135805)	promoter-TSS (NM_001135805)	-384	NM_001135805	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
19-PTNLD28-TUMOR_peak_53369	chr2	70752181	70752430	+	7.44139	NA	intron (NM_001099691, intron 1 of 5)	intron (NM_001099691, intron 1 of 5)	28842	NM_003236	7039	Hs.170009	NM_003236	HPRD:07522	TGFA	TFGA	transforming growth factor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_66716	chr3	13152723	13153018	+	7.43960	NA	Intergenic	Intergenic	-38253	NM_001134382	9922	Hs.475506	NM_014869	HPRD:11052	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding
19-PTNLD28-TUMOR_peak_91161	chr7	6388097	6388262	+	7.43960	NA	intron (NM_001037163, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	411	NM_001037163	84792	Hs.696146	NM_001037163	HPRD:14427	FAM220A	C7orf70|SIPAR	family with sequence similarity 220, member A	protein-coding
19-PTNLD28-TUMOR_peak_33558	chr15	51202806	51202942	+	7.43960	NA	intron (NM_007347, intron 1 of 20)	AluSx|SINE|Alu	2005	NM_001252127	23431	Hs.413366	NM_007347	HPRD:06258	AP4E1	CPSQ4|SPG51	adaptor-related protein complex 4, epsilon 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_888	chr1	13370837	13370983	+	7.43960	NA	intron (NM_001099850, intron 1 of 2)	intron (NM_001099850, intron 1 of 2)	6024	NM_001300891	101929983		NM_001300891		LOC101929983	-	PRAME family member 9/15-like	protein-coding
19-PTNLD28-TUMOR_peak_13767	chr10	61554129	61554351	+	7.43960	NA	exon (NM_005436, exon 8 of 9)	exon (NM_005436, exon 8 of 9)	-41037	NR_038199	100507027	Hs.648790	NR_038199	ENSG00000227877	LINC00948	M1|MUSER1	long intergenic non-protein coding RNA 948	ncRNA
19-PTNLD28-TUMOR_peak_105900	chr9	124413834	124414047	+	7.43960	NA	intron (NM_032552, intron 1 of 16)	CpG	84559	NM_032552	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_33901	chr15	63271643	63271893	+	7.43960	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-63070	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_43359	chr17	72970867	72971034	+	7.43960	NA	intron (NR_110878, intron 2 of 2)	intron (NR_110878, intron 2 of 2)	-2050	NM_030630	283987	Hs.11067	NM_030630	HPRD:05766	HID1	C17orf28|DMC1|HID-1	HID1 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_86517	chr6	30782144	30782234	+	7.43895	NA	Intergenic	Intergenic	-68201	NM_001297652	780	Hs.631988	NM_001954	HPRD:02678	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_67954	chr3	46976320	46976626	+	7.43895	NA	intron (NM_001277074, intron 2 of 6)	intron (NM_001277074, intron 2 of 6)	41518	NR_102269	151903	Hs.631918	NM_144716	HPRD:13007	CCDC12	-	coiled-coil domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_55446	chr2	122407563	122407684	+	7.43895	NA	promoter-TSS (NM_015282)	promoter-TSS (NM_015282)	58	NR_037856	254128	Hs.712685	NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96434	chr7	151572727	151572911	+	7.43873	NA	intron (NM_016203, intron 1 of 15)	CpG	-1308	NR_038926	100505483	Hs.649054	NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_806	chr1	11969344	11969838	+	7.43627	NA	Intergenic	Intergenic	16894	NM_138346	90231	Hs.520094	NM_138346	HPRD:14576	KIAA2013	-	KIAA2013	protein-coding
19-PTNLD28-TUMOR_peak_87999	chr6	52985001	52985103	+	7.43176	NA	Intergenic	Intergenic	28572	NM_003643	8521	Hs.28346	NM_003643	HPRD:04757	GCM1	GCMA|hGCMa	glial cells missing homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_89632	chr6	138014061	138014242	+	7.43176	NA	Intergenic	ERVL-int|LTR|ERVL	46023	NR_121618	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_105728	chr9	119714748	119714848	+	7.43176	NA	intron (NM_014010, intron 9 of 21)	intron (NM_014010, intron 9 of 21)	228682	NR_003708	100124538	Hs.693445	NR_003708		SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
19-PTNLD28-TUMOR_peak_36308	chr16	11691098	11691313	+	7.43176	NA	Intergenic	Intergenic	-9883	NR_024320	9516	Hs.459940	NM_004862	HPRD:10354	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide-induced TNF factor	protein-coding
19-PTNLD28-TUMOR_peak_54911	chr2	111569401	111569527	+	7.43176	NA	intron (NM_001142807, intron 9 of 17)	intron (NM_001142807, intron 9 of 17)	79314	NM_001142807	55289	Hs.253320	NM_018308	HPRD:12418	ACOXL	-	acyl-CoA oxidase-like	protein-coding
19-PTNLD28-TUMOR_peak_1041	chr1	16359443	16359584	+	7.43176	NA	intron (NM_001257139, intron 17 of 18)	intron (NM_001257139, intron 17 of 18)	-10718	NM_000085	1188	Hs.352243	NM_000085	HPRD:03607	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride channel, voltage-sensitive Kb	protein-coding
19-PTNLD28-TUMOR_peak_12013	chr10	11818227	11818398	+	7.43176	NA	Intergenic	MER20B|DNA|hAT-Charlie	33956	NM_024693	79746	Hs.22242	NM_024693	HPRD:10930	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_13177	chr10	43491855	43491958	+	7.43176	NA	Intergenic	Intergenic	-1105	NR_049836	100847014		NR_049836	miRBase:MI0019116	MIR5100	-	microRNA 5100	ncRNA
19-PTNLD28-TUMOR_peak_77336	chr4	142274269	142274542	+	7.43176	NA	Intergenic	Intergenic	-20634	NR_121625	100507639	Hs.535010	NR_121625	ENSG00000248810	LOC100507639	-	uncharacterized LOC100507639	ncRNA
19-PTNLD28-TUMOR_peak_99618	chr8	98212664	98212782	+	7.43176	NA	intron (NR_125390, intron 2 of 2)	intron (NR_125390, intron 2 of 2)	77453	NM_033512	85453	Hs.173094	NM_033512	HPRD:15576	TSPYL5	-	TSPY-like 5	protein-coding
19-PTNLD28-TUMOR_peak_68700	chr3	62651629	62651788	+	7.43176	NA	intron (NM_183393, intron 3 of 26)	intron (NM_183393, intron 3 of 26)	209356	NM_003716	8618	Hs.654933	NM_003716	HPRD:05236	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
19-PTNLD28-TUMOR_peak_19410	chr11	66346655	66346785	+	7.43176	NA	Intergenic	Intergenic	-10673	NM_003793	8722	Hs.11590	NM_003793	HPRD:04643	CTSF	CATSF|CLN13	cathepsin F	protein-coding
19-PTNLD28-TUMOR_peak_33913	chr15	63373027	63373225	+	7.43176	NA	Intergenic	Intergenic	32490	NM_001018008	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_33096	chr15	38856296	38856580	+	7.43176	NA	intron (NM_005739, intron 1 of 16)	CpG	569	NM_005739	10125	Hs.591127	NM_005739	HPRD:04909	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_68903	chr3	69166129	69166402	+	7.43176	NA	intron (NM_198271, intron 2 of 2)	intron (NM_198271, intron 2 of 2)	5481	NM_198271	56203	Hs.350621	NM_198271	HPRD:13993	LMOD3	-	leiomodin 3 (fetal)	protein-coding
19-PTNLD28-TUMOR_peak_78701	chr5	1763863	1763967	+	7.43176	NA	Intergenic	Intergenic	36041	NM_032479	64979	Hs.719465	NM_032479	HPRD:14756	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
19-PTNLD28-TUMOR_peak_68458	chr3	54999901	55000034	+	7.43176	NA	intron (NM_018398, intron 27 of 37)	intron (NM_018398, intron 27 of 37)	-37895	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_40040	chr17	7920130	7920241	+	7.43176	NA	intron (NM_000180, intron 19 of 19)	MER91C|DNA|hAT-Tip100	14197	NM_000180	3000	Hs.592109	NM_000180	HPRD:02550	GUCY2D	CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, membrane (retina-specific)	protein-coding
19-PTNLD28-TUMOR_peak_74206	chr4	6875744	6875911	+	7.43176	NA	intron (NM_001100590, intron 7 of 8)	MIRb|SINE|MIR	-35344	NM_001113361	57533	Hs.518611	NM_020773	HPRD:11623	TBC1D14	-	TBC1 domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_91960	chr7	33944531	33944688	+	7.43176	NA	promoter-TSS (NM_133468)	promoter-TSS (NM_133468)	86	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_100192	chr8	117363800	117363922	+	7.43176	NA	Intergenic	Intergenic	-26564	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
19-PTNLD28-TUMOR_peak_90612	chr6	169077820	169078070	+	7.43176	NA	Intergenic	LTR7C|LTR|ERV1	236114	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_107693	chrX	17806688	17806787	+	7.43176	NA	Intergenic	Intergenic	51168	NM_001037536	6322	Hs.109655	NM_006746	HPRD:02205	SCML1	-	sex comb on midleg-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_45963	chr18	56622374	56622561	+	7.43176	NA	intron (NM_018181, intron 8 of 10)	AluJo|SINE|Alu	-80504	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_41245	chr17	36740688	36740844	+	7.43176	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	21417	NM_025248	80725	Hs.448872	NM_025248	HPRD:11589	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_88710	chr6	89960972	89961075	+	7.43176	NA	Intergenic	MER5B|DNA|hAT-Charlie	-20016	NM_001267582	2569	Hs.99927	NM_002042	HPRD:15921	GABRR1	-	gamma-aminobutyric acid (GABA) A receptor, rho 1	protein-coding
19-PTNLD28-TUMOR_peak_43226	chr17	70553196	70553386	+	7.43176	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	35652	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_61592	chr20	46988508	46988693	+	7.43176	NA	promoter-TSS (NR_026958)	promoter-TSS (NR_026958)	-54	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_81813	chr5	122578074	122578270	+	7.43176	NA	Intergenic	L1PA2|LINE|L1	153331	NM_001136239	93166	Hs.135118	NM_001136239	ENSG00000061455	PRDM6	-	PR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_40714	chr17	25515557	25515654	+	7.43176	NA	Intergenic	L1PA3|LINE|L1	105417	NR_039748	100616277		NR_039748	miRBase:MI0016889	MIR4522	-	microRNA 4522	ncRNA
19-PTNLD28-TUMOR_peak_50626	chr1_gl000191_random	21447	21634	+	7.43176	NA	Intergenic	Intergenic	28741	NM_006625	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_92046	chr7	36933947	36934068	+	7.43176	NA	intron (NM_001206480, intron 17 of 21)	intron (NM_001206480, intron 17 of 21)	25030	NR_031604	100302113		NR_031604		MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
19-PTNLD28-TUMOR_peak_100323	chr8	119982181	119982363	+	7.43176	NA	Intergenic	Intergenic	-17889	NM_002546	4982	Hs.81791	NM_002546	HPRD:04032	TNFRSF11B	OCIF|OPG|TR1	tumor necrosis factor receptor superfamily, member 11b	protein-coding
19-PTNLD28-TUMOR_peak_100848	chr8	129027048	129027138	+	7.43176	NA	intron (NR_003367, intron 4 of 7)	intron (NR_003367, intron 4 of 7)	5949	NR_031611	100302170		NR_031611		MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_94070	chr7	96430215	96430393	+	7.43176	NA	Intergenic	Intergenic	-91101	NM_006304	7979	Hs.489201	NM_006304		SHFM1	DSS1|ECD|SEM1|SHFD1|SHSF1|Shfdg1	split hand/foot malformation (ectrodactyly) type 1	protein-coding
19-PTNLD28-TUMOR_peak_97869	chr8	27815391	27815604	+	7.43176	NA	intron (NM_173833, intron 3 of 8)	MER58A|DNA|hAT-Charlie	34872	NM_173833	286133	Hs.591833	NM_173833	HPRD:11356	SCARA5	NET33|Tesr	scavenger receptor class A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_80875	chr5	78397604	78397692	+	7.43176	NA	Intergenic	L1PA3|LINE|L1	-9956	NM_001713	635	Hs.80756	NM_001713	HPRD:04200	BHMT	BHMT1|HEL-S-61p	betaine--homocysteine S-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_26215	chr12	110065643	110065731	+	7.43114	NA	Intergenic	MIRc|SINE|MIR	54187	NM_001114185	4598	Hs.130607	NM_000431	HPRD:02015	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
19-PTNLD28-TUMOR_peak_58788	chr2	231692949	231693359	+	7.43114	NA	Intergenic	CpG	-36159	NM_001287241	81618	Hs.111577	NM_030926	HPRD:17167	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
19-PTNLD28-TUMOR_peak_63588	chr21	40900059	40900205	+	7.43114	NA	Intergenic	Intergenic	76352	NM_007341	6450	Hs.473847	NM_007341	HPRD:03753	SH3BGR	21-GARP	SH3 domain binding glutamate-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_71983	chr3	157615105	157615204	+	7.43114	NA	Intergenic	L1PA3|LINE|L1	208798	NM_003030	6474	Hs.55967	NM_003030		SHOX2	OG12|OG12X|SHOT	short stature homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_49467	chr19	46621554	46621753	+	7.43114	NA	Intergenic	L1M2a1|LINE|L1	6278	NM_207393	388555	Hs.365496	NM_207393	HPRD:17140	IGFL3	UNQ483	IGF-like family member 3	protein-coding
19-PTNLD28-TUMOR_peak_17283	chr11	13015355	13015445	+	7.43114	NA	Intergenic	Intergenic	-4305	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
19-PTNLD28-TUMOR_peak_83387	chr5	153984000	153984106	+	7.43114	NA	Intergenic	MIRb|SINE|MIR	-8421	NR_036094	100422950		NR_036094	miRBase:MI0014165	MIR3141	-	microRNA 3141	ncRNA
19-PTNLD28-TUMOR_peak_79127	chr5	16886601	16886762	+	7.43114	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	49704	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_50743	chr2	636931	637163	+	7.43114	NA	Intergenic	CpG	40392	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_3755	chr1	57221724	57221828	+	7.43114	NA	intron (NM_001004303, intron 6 of 19)	intron (NM_001004303, intron 6 of 19)	63593	NM_001004303	199920	Hs.437655	NM_001004303	HPRD:14120	C1orf168	-	chromosome 1 open reading frame 168	protein-coding
19-PTNLD28-TUMOR_peak_3675	chr1	55284887	55285001	+	7.43114	NA	intron (NM_001110533, intron 9 of 9)	HAL1|LINE|L1	13208	NM_152607	163747	Hs.376018	NM_152607	HPRD:08807	C1orf177	-	chromosome 1 open reading frame 177	protein-coding
19-PTNLD28-TUMOR_peak_102963	chr9	36970110	36970257	+	7.43114	NA	intron (NM_001280553, intron 4 of 7)	L2a|LINE|L2	64293	NM_001280548	5079	Hs.654464	NM_016734	HPRD:01334	PAX5	ALL3|BSAP	paired box 5	protein-coding
19-PTNLD28-TUMOR_peak_726	chr1	10926822	10927055	+	7.43114	NA	Intergenic	Intergenic	-70205	NM_017766	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_109908	chrX	153084462	153084810	+	7.43114	NA	intron (NM_032512, intron 1 of 7)	CpG	11367	NM_032512	57595	Hs.92732	NM_032512	HPRD:06601	PDZD4	LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_21768	chr11	122917684	122917911	+	7.43114	NA	Intergenic	Intergenic	15246	NM_006597	3312	Hs.180414	NM_006597	HPRD:07205	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock 70kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_15073	chr10	98701458	98701746	+	7.43114	NA	intron (NM_001170765, intron 4 of 7)	SVA_E|Other|Other	-39439	NM_015652	26148	Hs.14555	NM_015652	HPRD:12563	C10orf12	-	chromosome 10 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_8923	chr1	186806290	186806482	+	7.43114	NA	intron (NM_024420, intron 1 of 17)	L2a|LINE|L2	8354	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_97066	chr8	8742050	8742175	+	7.43114	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	9019	NM_004225	9258	Hs.379414	NM_004225	HPRD:12010	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
19-PTNLD28-TUMOR_peak_80150	chr5	60241383	60241499	+	7.43014	NA	promoter-TSS (NM_001007234)	promoter-TSS (NM_001007234)	485	NM_174889	91942	Hs.591757	NM_174889	HPRD:14288	NDUFAF2	B17.2L|MMTN|NDUFA12L|mimitin	NADH dehydrogenase (ubiquinone) complex I, assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_86143	chr6	26383917	26384160	+	7.43014	NA	5' UTR (NM_001197238, exon 2 of 8)	5' UTR (NM_001197238, exon 2 of 8)	599	NM_001197237	10385	Hs.373938	NM_006995	HPRD:12545	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin, subfamily 2, member A2	protein-coding
19-PTNLD28-TUMOR_peak_32330	chr14	105556960	105557053	+	7.43014	NA	Intergenic	Intergenic	-3478	NR_110546	102723354	Hs.569410	NR_110546		LOC102723354	-	uncharacterized LOC102723354	ncRNA
19-PTNLD28-TUMOR_peak_20965	chr11	106888376	106888761	+	7.42843	NA	exon (NM_000855, exon 1 of 8)	exon (NM_000855, exon 1 of 8)	603	NM_000855	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_41103	chr17	34131868	34132001	+	7.42843	NA	Intergenic	L2|LINE|L2	-4525	NM_003487	8148	Hs.402752	NM_003487	HPRD:09031	TAF15	Npl3|RBP56|TAF2N|TAFII68	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_14393	chr10	76994124	76994273	+	7.42843	NA	intron (NM_144589, intron 6 of 6)	CpG	1572	NM_144589	118881	Hs.355333	NM_144589	HPRD:08678	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_7785	chr1	162874370	162874530	+	7.42843	NA	Intergenic	Intergenic	-35845	NM_178550	339512	Hs.407631	NM_178550	HPRD:14661	C1orf110	-	chromosome 1 open reading frame 110	protein-coding
19-PTNLD28-TUMOR_peak_82968	chr5	145582573	145582692	+	7.42828	NA	promoter-TSS (NM_018989)	promoter-TSS (NM_018989)	-531	NM_018989	54439	Hs.61441	NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18	RNA binding motif protein 27	protein-coding
19-PTNLD28-TUMOR_peak_7108	chr1	154785793	154785978	+	7.42583	NA	intron (NM_002249, intron 2 of 7)	intron (NM_002249, intron 2 of 7)	46453	NM_170782	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_75042	chr4	40517164	40517347	+	7.42409	NA	intron (NM_001098634, intron 2 of 6)	intron (NM_001098634, intron 2 of 6)	735	NM_019027	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
19-PTNLD28-TUMOR_peak_55846	chr2	133729273	133729723	+	7.42409	NA	intron (NM_207481, intron 7 of 17)	MER5A|DNA|hAT-Charlie	-294269	NR_110294	101928161	Hs.661917	NR_110294	ENSG00000226953	LOC101928161	-	uncharacterized LOC101928161	ncRNA
19-PTNLD28-TUMOR_peak_22472	chr12	2374257	2374351	+	7.42409	NA	intron (NM_001129832, intron 3 of 47)	intron (NM_001129832, intron 3 of 47)	-4638	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_66052	chr22	47588409	47588698	+	7.42409	NA	Intergenic	Intergenic	-276615	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36531	chr16	16092430	16092525	+	7.42409	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	49043	NM_004996	4363	Hs.391464	NM_004996	HPRD:01153	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding
19-PTNLD28-TUMOR_peak_98257	chr8	38311964	38312171	+	7.42409	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	13296	NM_001174067	2260	Hs.264887	NM_015850	HPRD:00634	FGFR1	BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_32718	chr15	28648033	28648223	+	7.42409	NA	Intergenic	CpG	-23509	NR_039734	100616382		NR_039734	miRBase:MI0016875	MIR4509-3	-	microRNA 4509-3	ncRNA
19-PTNLD28-TUMOR_peak_2136	chr1	32829490	32829658	+	7.42409	NA	TTS (NM_001143888)	TTS (NM_001143888)	1712	NM_052841	81629	Hs.512763	NM_052841	HPRD:09635	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis-specific serine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_21964	chr11	126350765	126350862	+	7.42409	NA	intron (NM_001301097, intron 4 of 15)	intron (NM_001301097, intron 4 of 15)	74736	NM_001254759	6484	Hs.591947	NM_006278	HPRD:00084	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_65341	chr22	36792093	36792268	+	7.42409	NA	Intergenic	L2b|LINE|L2	-8117	NM_002473	4627	Hs.474751	NM_002473	HPRD:01177	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin, heavy chain 9, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_22668	chr12	5542028	5542147	+	7.42409	NA	intron (NM_001102654, intron 1 of 1)	CpG	807	NM_001102654	4908	Hs.99171	NM_002527	HPRD:01219	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
19-PTNLD28-TUMOR_peak_74041	chr4	3963107	3963251	+	7.42409	NA	Intergenic	Intergenic	-6031	NR_024253	348926	Hs.591720	NR_024253		FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22837	chr12	7074292	7074462	+	7.42343	NA	TTS (NM_001144831)	TTS (NM_001144831)	1117	NR_029682	406933		NR_029682	miRBase:MI0000457	MIR141	MIRN141	microRNA 141	ncRNA
19-PTNLD28-TUMOR_peak_86205	chr6	27113576	27113676	+	7.42342	NA	intron (NM_080593, intron 1 of 1)	intron (NM_080593, intron 1 of 1)	1011	NM_080593	85236	Hs.437275	NM_080593	HPRD:13658	HIST1H2BK	H2B/S|H2BFAiii|H2BFT|H2BK	histone cluster 1, H2bk	protein-coding
19-PTNLD28-TUMOR_peak_41809	chr17	43387967	43388336	+	7.41968	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	6279	NM_003954	9020	Hs.404183	NM_003954		MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_9411	chr1	203250277	203250404	+	7.41856	NA	Intergenic	Intergenic	-5940	NR_117097	100506775	Hs.443859	NR_117097		LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
19-PTNLD28-TUMOR_peak_21133	chr11	111641602	111641723	+	7.41059	NA	Intergenic	Intergenic	-4493	NM_181699	5519	Hs.269128	NM_002716	HPRD:04384	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2, regulatory subunit A, beta	protein-coding
19-PTNLD28-TUMOR_peak_7044	chr1	154164605	154164775	+	7.41059	NA	promoter-TSS (NM_152263)	promoter-TSS (NM_152263)	-79	NM_152263	7170	Hs.535581	NM_152263	HPRD:01840	TPM3	CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
19-PTNLD28-TUMOR_peak_99126	chr8	70407067	70407234	+	7.41059	NA	intron (NM_001128206, intron 1 of 21)	L2b|LINE|L2	2122	NM_001128205	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_5801	chr1	116855118	116855217	+	7.41059	NA	Intergenic	MIR3|SINE|MIR	-60628	NM_000701	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_13727	chr10	60145594	60145829	+	7.41059	NA	intron (NR_073073, intron 1 of 7)	intron (NR_073073, intron 1 of 7)	808	NM_001270782	7019	Hs.594250	NM_003201	HPRD:02702	TFAM	MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_88396	chr6	76151997	76152153	+	7.41059	NA	intron (NM_001300866, intron 1 of 6)	SVA_D|Other|Other	51470	NR_110608	27145	Hs.696158	NM_015687	HPRD:09533	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16336	chr10	134277772	134278092	+	7.41059	NA	Intergenic	Intergenic	19218	NM_173541	170393	Hs.375059	NM_173541		C10orf91	bA432J24.4	chromosome 10 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_29755	chr14	32545401	32545494	+	7.41005	NA	non-coding (NR_027263, exon 1 of 1)	non-coding (NR_027263, exon 1 of 1)	458	NR_027263	84837	Hs.496755	NM_032751	ENSG00000258655	ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_62269	chr20	55984000	55984121	+	7.41005	NA	3' UTR (NM_017495, exon 4 of 4)	3' UTR (NM_017495, exon 4 of 4)	17606	NM_001291780	55544	Hs.236361	NM_017495	HPRD:15268	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
19-PTNLD28-TUMOR_peak_82215	chr5	133561082	133561370	+	7.40967	NA	promoter-TSS (NR_037434)	promoter-TSS (NR_037434)	-222	NR_037434	100500905		NR_037434	miRBase:MI0016062	MIR3661	-	microRNA 3661	ncRNA
19-PTNLD28-TUMOR_peak_99124	chr8	70401552	70401644	+	7.40600	NA	intron (NM_001128204, intron 1 of 21)	intron (NM_001128204, intron 1 of 21)	-3430	NM_001128206	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_25430	chr12	80084432	80084544	+	7.40600	NA	intron (NM_002583, intron 1 of 6)	CpG	302	NM_002583	5074	Hs.643130	NM_002583		PAWR	PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
19-PTNLD28-TUMOR_peak_91166	chr7	6424149	6424266	+	7.40600	NA	intron (NM_006908, intron 1 of 5)	AluJo|SINE|Alu	10081	NM_018890	5879	Hs.413812	NM_006908	HPRD:03627	RAC1	Rac-1|TC-25|p21-Rac1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	protein-coding
19-PTNLD28-TUMOR_peak_106908	chr9	141150283	141150409	+	7.40600	NA	Intergenic	AluJr4|SINE|Alu	43709	NM_001145249	100132403	Hs.741123	NM_001145249		FAM157B	-	family with sequence similarity 157, member B	protein-coding
19-PTNLD28-TUMOR_peak_29257	chr14	19526699	19526791	+	7.40589	NA	Intergenic	MER4-int|LTR|ERV1	-26620	NR_027480	404785	Hs.711826	NM_207513	HPRD:12331	POTEG	A26C2|ACTBL1|CT104.4|POTE-14|POTE14|POTE14alpha|POTE22	POTE ankyrin domain family, member G	protein-coding
19-PTNLD28-TUMOR_peak_20159	chr11	76384002	76384125	+	7.40589	NA	Intergenic	MIR|SINE|MIR	-2272	NM_001128922	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_73662	chr3	197276504	197276736	+	7.40589	NA	intron (NM_203315, intron 1 of 6)	intron (NM_203315, intron 1 of 6)	6238	NM_203314	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_36213	chr16	10214980	10215076	+	7.40589	NA	intron (NM_000833, intron 3 of 13)	intron (NM_000833, intron 3 of 13)	60896	NM_001134408	2903	Hs.411472	NM_000833	HPRD:00698	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	protein-coding
19-PTNLD28-TUMOR_peak_47100	chr19	9065326	9065414	+	7.40589	NA	exon (NM_024690, exon 3 of 84)	exon (NM_024690, exon 3 of 84)	26648	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	mucin 16, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_108261	chrX	48816103	48816282	+	7.40589	NA	promoter-TSS (NM_001136159)	promoter-TSS (NM_001136159)	-544	NM_001136159	55593	Hs.496098	NM_017602	HPRD:06488	OTUD5	DUBA	OTU deubiquitinase 5	protein-coding
19-PTNLD28-TUMOR_peak_87586	chr6	43437348	43437489	+	7.40569	NA	Intergenic	Intergenic	-7843	NM_001146018	93643	Hs.520145	NM_080604	HPRD:10269	TJAP1	PILT|TJP4	tight junction associated protein 1 (peripheral)	protein-coding
19-PTNLD28-TUMOR_peak_83469	chr5	156886943	156887162	+	7.40569	NA	promoter-TSS (NM_001099287)	promoter-TSS (NM_001099287)	25	NM_001099287	348938	Hs.4285	NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN	NIPA-like domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_31110	chr14	70750010	70750217	+	7.40569	NA	Intergenic	Intergenic	-35595	NR_003951	145241	Hs.712468	NR_003951	ENSG00000235812	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_60347	chr20	26214773	26214884	+	7.40569	NA	Intergenic	L1PA2|LINE|L1	-24959	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_58805	chr2	232243206	232243300	+	7.40569	NA	Intergenic	Intergenic	15834	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	ncRNA
19-PTNLD28-TUMOR_peak_42220	chr17	48287838	48287959	+	7.40569	NA	Intergenic	Intergenic	-4157	NR_110806	101927230	Hs.514326	NR_110806	ENSG00000251085	LOC101927230	-	uncharacterized LOC101927230	ncRNA
19-PTNLD28-TUMOR_peak_56571	chr2	160352961	160353055	+	7.40569	NA	intron (NM_001289975, intron 2 of 35)	AluSz6|SINE|Alu	-118797	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
19-PTNLD28-TUMOR_peak_76547	chr4	109330395	109330531	+	7.40569	NA	Intergenic	SVA_E|Other|Other	211150	NR_026968	285456	Hs.683863	NM_182591	HPRD:08228	RPL34-AS1	-	RPL34 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_30278	chr14	52218685	52218946	+	7.40569	NA	Intergenic	HERVE-int|LTR|ERV1	34814	NM_001267047	122786	Hs.434914	NM_152330	HPRD:12646	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_7692	chr1	161427936	161428063	+	7.40068	NA	Intergenic	CpG	-47206	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_25054	chr12	66218681	66219193	+	7.40033	NA	5' UTR (NM_003484, exon 1 of 4)	5' UTR (NM_003484, exon 1 of 4)	697	NM_001300918	8091	Hs.505924	NM_003483	HPRD:02827	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
19-PTNLD28-TUMOR_peak_93203	chr7	73207066	73207194	+	7.40033	NA	Intergenic	MER21C|LTR|ERVL	-22530	NM_001306	1365	Hs.647023	NM_001306	HPRD:04219	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
19-PTNLD28-TUMOR_peak_73860	chr4	1750561	1750710	+	7.39955	NA	Intergenic	Intergenic	27418	NM_006342	10460	Hs.104019	NM_006342	HPRD:05601	TACC3	ERIC-1|ERIC1	transforming, acidic coiled-coil containing protein 3	protein-coding
19-PTNLD28-TUMOR_peak_16449	chr11	208737	208907	+	7.39955	NA	promoter-TSS (NR_106801)	promoter-TSS (NR_106801)	-514	NR_106801	102465445		NR_106801		MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
19-PTNLD28-TUMOR_peak_29477	chr14	23399668	23399908	+	7.39955	NA	promoter-TSS (NM_001282953)	promoter-TSS (NM_001282953)	970	NR_110002	101926933	Hs.727321	NR_110002	ENSG00000257285	LOC101926933	-	uncharacterized LOC101926933	ncRNA
19-PTNLD28-TUMOR_peak_78667	chr5	1386567	1386771	+	7.39760	NA	Intergenic	CpG	-41667	NM_030782	81037	Hs.444673	NM_030782	HPRD:07480	CLPTM1L	CRR9	CLPTM1-like	protein-coding
19-PTNLD28-TUMOR_peak_75160	chr4	48908756	48908929	+	7.39760	NA	promoter-TSS (NM_001286774)	promoter-TSS (NM_001286774)	3	NM_001286773	132299	Hs.95835	NM_152398	HPRD:14873	OCIAD2	-	OCIA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83555	chr5	158766525	158766766	+	7.39760	NA	intron (NR_037889, intron 2 of 4)	intron (NR_037889, intron 2 of 4)	8119	NR_037889	285626	Hs.449275	NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
19-PTNLD28-TUMOR_peak_36654	chr16	19765465	19765924	+	7.39760	NA	intron (NM_153208, intron 5 of 9)	intron (NM_153208, intron 5 of 9)	-36202	NM_001012991	400506	Hs.585209	NM_001012991		KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine-rich nucleolar protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43977	chr17	79490359	79490448	+	7.39675	NA	Intergenic	Intergenic	-5014	NM_001077182	25794	Hs.118555	NM_012418	HPRD:06366	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
19-PTNLD28-TUMOR_peak_22379	chr12	647915	648036	+	7.39357	NA	intron (NM_173593, intron 3 of 19)	intron (NM_173593, intron 3 of 19)	71604	NM_001294345	4815	Hs.655804	NM_016533	HPRD:09530	NINJ2	-	ninjurin 2	protein-coding
19-PTNLD28-TUMOR_peak_58374	chr2	218787100	218787309	+	7.39159	NA	intron (NM_022648, intron 1 of 32)	intron (NM_022648, intron 1 of 32)	21592	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_19110	chr11	63916243	63916334	+	7.39159	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	17297	NM_014067	28992	Hs.602898	NM_014067	HPRD:17448	MACROD1	LRP16	MACRO domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_78558	chr5	175764	176009	+	7.39159	NA	intron (NM_052909, intron 16 of 17)	intron (NM_052909, intron 16 of 17)	-15740	NM_001080478	389257	Hs.683662	NM_001080478		LRRC14B	-	leucine rich repeat containing 14B	protein-coding
19-PTNLD28-TUMOR_peak_41151	chr17	34949004	34949156	+	7.39159	NA	intron (NM_024308, intron 1 of 6)	intron (NM_024308, intron 1 of 6)	854	NM_024308	79154	Hs.462859	NM_024308	HPRD:08331	DHRS11	ARPG836|SDR24C1	dehydrogenase/reductase (SDR family) member 11	protein-coding
19-PTNLD28-TUMOR_peak_27757	chr13	32889990	32890111	+	7.39159	NA	intron (NM_000059, intron 1 of 26)	intron (NM_000059, intron 1 of 26)	433	NM_000059	675	Hs.34012	NM_000059	HPRD:02554	BRCA2	BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2	breast cancer 2, early onset	protein-coding
19-PTNLD28-TUMOR_peak_28230	chr13	49948822	49949000	+	7.39159	NA	intron (NM_001287339, intron 4 of 9)	intron (NM_001287339, intron 4 of 9)	26763	NM_030925	81617	Hs.87159	NM_030925	HPRD:12993	CAB39L	MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39-like	protein-coding
19-PTNLD28-TUMOR_peak_15489	chr10	106099632	106099822	+	7.39159	NA	Intergenic	Intergenic	-1476	NM_001272013	85450	Hs.523252	NM_033397		ITPRIP	DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_16315	chr10	134121380	134121748	+	7.39159	NA	promoter-TSS (NM_173575)	promoter-TSS (NM_173575)	-87	NM_173575	282974	Hs.469002	NM_173575	HPRD:18119	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
19-PTNLD28-TUMOR_peak_24778	chr12	57901919	57902050	+	7.38930	NA	intron (NM_004990, intron 11 of 20)	SVA_D|Other|Other	-4487	NR_106816	102465454		NR_106816		MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
19-PTNLD28-TUMOR_peak_98055	chr8	30769513	30769907	+	7.38930	NA	Intergenic	CpG	-63177	NM_031271	56154	Hs.458316	NM_031271	HPRD:09313	TEX15	CT42	testis expressed 15	protein-coding
19-PTNLD28-TUMOR_peak_49365	chr19	45626690	45626869	+	7.38930	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	30348	NM_019121	284352	Hs.285363	NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1, regulatory subunit 37	protein-coding
19-PTNLD28-TUMOR_peak_60486	chr20	30873576	30873708	+	7.38930	NA	intron (NM_004798, intron 1 of 8)	intron (NM_004798, intron 1 of 8)	8188	NM_004798	9371	Hs.369670	NM_004798	HPRD:04781	KIF3B	FLA8|HH0048|KLP-11	kinesin family member 3B	protein-coding
19-PTNLD28-TUMOR_peak_107923	chrX	37208767	37208912	+	7.38930	NA	intron (NM_001173490, intron 1 of 3)	CpG	256	NM_001173489	5638	Hs.190341	NM_000950	HPRD:05113	PRRG1	PRGP1	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding
19-PTNLD28-TUMOR_peak_70209	chr3	123086627	123086760	+	7.38930	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	48496	NM_001199642	111	Hs.593292	NM_183357	HPRD:08973	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
19-PTNLD28-TUMOR_peak_66924	chr3	15839411	15839521	+	7.38930	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	225	NM_001195098	23243	Hs.335239	NM_015199	HPRD:10651	ANKRD28	PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_88441	chr6	79520637	79520809	+	7.38930	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-56538	NM_001010844	134728	Hs.656212	NM_001010844	HPRD:17157	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25894	chr12	104259233	104259324	+	7.38930	NA	intron (NR_027249, intron 11 of 15)	intron (NR_027249, intron 11 of 15)	-24303	NM_001031701	51559	Hs.48428	NM_016575	HPRD:18241	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_56336	chr2	152779969	152780093	+	7.38930	NA	intron (NM_001005746, intron 2 of 13)	intron (NM_001005746, intron 2 of 13)	50454	NM_001005747	785	Hs.120725	NM_000726	HPRD:09057	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
19-PTNLD28-TUMOR_peak_59401	chr20	704352	704740	+	7.38930	NA	Intergenic	Intergenic	44682	NM_033409	113278	Hs.283865	NM_033409	HPRD:09843	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 (riboflavin transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_81741	chr5	118763494	118763675	+	7.38930	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-24554	NM_000414	3295	Hs.406861	NM_000414	HPRD:03514	HSD17B4	DBP|MFE-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding
19-PTNLD28-TUMOR_peak_85514	chr6	13733497	13733615	+	7.38930	NA	Intergenic	Intergenic	-21760	NM_005493	10048	Hs.708182	NM_005493	HPRD:04835	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_53143	chr2	65648045	65648210	+	7.38930	NA	intron (NM_181784, intron 1 of 5)	intron (NM_181784, intron 1 of 5)	11529	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25951	chr12	105112481	105112695	+	7.38930	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	127177	NR_037487	100500843		NR_037487		MIR3922	-	microRNA 3922	ncRNA
19-PTNLD28-TUMOR_peak_108128	chrX	46303581	46303708	+	7.38930	NA	Intergenic	Intergenic	-2980	NM_001129899	55634	Hs.632800	NM_017776	HPRD:06530	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_74933	chr4	37677619	37677806	+	7.38930	NA	intron (NM_001085400, intron 1 of 6)	intron (NM_001085400, intron 1 of 6)	10287	NM_001085399	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT-like 1	protein-coding
19-PTNLD28-TUMOR_peak_18240	chr11	44386304	44386437	+	7.38930	NA	Intergenic	Intergenic	-54654	NM_021926	60529	Hs.436055	NM_021926	HPRD:05661	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_28134	chr13	46626557	46626716	+	7.38930	NA	promoter-TSS (NR_046227)	promoter-TSS (NR_046227)	260	NM_015070	23091	Hs.136102	NM_015070	HPRD:08307	ZC3H13	KIAA0853	zinc finger CCCH-type containing 13	protein-coding
19-PTNLD28-TUMOR_peak_82374	chr5	136105902	136106028	+	7.38930	NA	Intergenic	Intergenic	-404801	NM_001167576	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_110096	chrY	1956356	1956528	+	7.38930	NA	Intergenic	Intergenic	272416	NM_001171039	438	Hs.522572	NM_004043	HPRD:02058	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_99497	chr8	92806237	92806332	+	7.38930	NA	Intergenic	L1PA3|LINE|L1	223624	NM_175636	862	Hs.368431	NM_004349	HPRD:00590	RUNX1T1	AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
19-PTNLD28-TUMOR_peak_6306	chr1	145399213	145399561	+	7.38499	NA	intron (NM_001039703, intron 68 of 85)	AluJb|SINE|Alu	-13804	NM_213653	148738	Hs.632436	NM_145277	HPRD:10521	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
19-PTNLD28-TUMOR_peak_10663	chr1	228769325	228769415	+	7.38347	NA	Intergenic	CpG	-11024	NR_037962	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_45551	chr18	45321978	45322100	+	7.38315	NA	Intergenic	Intergenic	134931	NM_005901	4087	Hs.12253	NM_005901	HPRD:03221	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_71981	chr3	157597641	157597744	+	7.38315	NA	Intergenic	L1PA4|LINE|L1	226260	NM_003030	6474	Hs.55967	NM_003030		SHOX2	OG12|OG12X|SHOT	short stature homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_579	chr1	9236372	9236515	+	7.38315	NA	Intergenic	AluJb|SINE|Alu	-24607	NR_029610	407040	Hs.730325	NR_029610	miRBase:MI0000268	MIR34A	MIRN34A|miRNA34A|mir-34	microRNA 34a	ncRNA
19-PTNLD28-TUMOR_peak_22964	chr12	8970582	8970746	+	7.38315	NA	Intergenic	L1MCc|LINE|L1	-4486	NM_144670	144568	Hs.620532	NM_144670	HPRD:08684	A2ML1	CPAMD9	alpha-2-macroglobulin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_65126	chr22	31569783	31569950	+	7.38315	NA	intron (NR_024212, intron 1 of 5)	intron (NR_024212, intron 1 of 5)	13728	NM_152267	91445	Hs.517553	NM_152267	HPRD:08790	RNF185	-	ring finger protein 185	protein-coding
19-PTNLD28-TUMOR_peak_69657	chr3	108850182	108850453	+	7.38315	NA	Intergenic	Intergenic	-5244	NR_033977	401081	Hs.280892	NR_033977	ENSG00000241224	FLJ22763	-	uncharacterized LOC401081	ncRNA
19-PTNLD28-TUMOR_peak_59848	chr20	12563685	12563775	+	7.38315	NA	Intergenic	L1PA2|LINE|L1	353881	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
19-PTNLD28-TUMOR_peak_102178	chr9	12329475	12329614	+	7.38315	NA	Intergenic	LTR13|LTR|ERVK	-363842	NM_000550	7306	Hs.270279	NM_000550	HPRD:00283	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_3728	chr1	56440945	56441204	+	7.38315	NA	Intergenic	Intergenic	604183	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_56003	chr2	138417281	138417423	+	7.38315	NA	intron (NM_001080427, intron 24 of 26)	intron (NM_001080427, intron 24 of 26)	268150	NR_120402	101928273	Hs.560928	NR_120402	ENSG00000234007	LOC101928273	-	uncharacterized LOC101928273	ncRNA
19-PTNLD28-TUMOR_peak_4588	chr1	85248283	85248375	+	7.38315	NA	Intergenic	Intergenic	-92089	NM_014021	117178	Hs.22587	NM_014021	HPRD:10566	SSX2IP	ADIP	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_56019	chr2	138965241	138965464	+	7.38315	NA	Intergenic	Intergenic	243544	NM_001024075	3176	Hs.42151	NM_006895	HPRD:05575	HNMT	HMT|HNMT-S1|HNMT-S2	histamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_77026	chr4	129084655	129084815	+	7.38315	NA	intron (NM_018078, intron 12 of 19)	L1MC5|LINE|L1	102314	NM_178043	55132	Hs.657067	NM_018078	HPRD:10963	LARP1B	LARP2	La ribonucleoprotein domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_18466	chr11	47422386	47422563	+	7.38315	NA	Intergenic	L1ME3F|LINE|L1	-7572	NM_152264	91252	Hs.523664	NM_152264	ENSG00000165915	SLC39A13	-	solute carrier family 39 (zinc transporter), member 13	protein-coding
19-PTNLD28-TUMOR_peak_46097	chr18	60660264	60660438	+	7.38315	NA	Intergenic	LTR32|LTR|ERVL	277679	NM_194449	23239	Hs.465337	NM_194449	HPRD:15145	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_58304	chr2	217411861	217412007	+	7.38315	NA	Intergenic	Intergenic	48414	NM_000998	6168	Hs.433701	NM_000998		RPL37A	L37A	ribosomal protein L37a	protein-coding
19-PTNLD28-TUMOR_peak_40775	chr17	26732991	26733478	+	7.38315	NA	promoter-TSS (NM_001242366)	promoter-TSS (NM_001242366)	-4	NM_001242366	113235	Hs.446689	NM_080669	HPRD:14715	SLC46A1	G21|HCP1|PCFT	solute carrier family 46 (folate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_14213	chr10	73252748	73252979	+	7.38315	NA	intron (NM_001171930, intron 3 of 30)	intron (NM_001171930, intron 3 of 30)	18814	NR_120672	102723377	Hs.568789	NR_120672		LOC102723377	-	uncharacterized LOC102723377	ncRNA
19-PTNLD28-TUMOR_peak_64273	chr22	18568146	18568316	+	7.38315	NA	intron (NM_017929, intron 5 of 5)	intron (NM_017929, intron 5 of 5)	7471	NM_001127649	55670	Hs.517400	NM_017929		PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
19-PTNLD28-TUMOR_peak_58441	chr2	219646642	219646898	+	7.38315	NA	5' UTR (NM_000784, exon 1 of 9)	5' UTR (NM_000784, exon 1 of 9)	298	NM_000784	1593	Hs.516700	NM_000784	HPRD:05939	CYP27A1	CP27|CTX|CYP27	cytochrome P450, family 27, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_95902	chr7	141492155	141492581	+	7.38315	NA	Intergenic	L2a|LINE|L2	2351	NM_018980	54429	Hs.675370	NM_018980	HPRD:05453	TAS2R5	T2R5	taste receptor, type 2, member 5	protein-coding
19-PTNLD28-TUMOR_peak_59284	chr2	241975908	241976014	+	7.38315	NA	intron (NM_001080437, intron 4 of 31)	CpG	37706	NM_001080437	25992	Hs.471834	NM_001080437	ENSG00000162804	SNED1	SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_39238	chr16	86032961	86033108	+	7.38315	NA	Intergenic	Intergenic	81081	NR_106832	102466732		NR_106832		MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
19-PTNLD28-TUMOR_peak_79406	chr5	33612182	33612362	+	7.38315	NA	intron (NM_030955, intron 16 of 23)	intron (NM_030955, intron 16 of 23)	171390	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_54287	chr2	97039857	97040096	+	7.38315	NA	3' UTR (NM_001281712, exon 17 of 17)	3' UTR (NM_001281712, exon 17 of 17)	38497	NM_015341	23397	Hs.308045	NM_015341	HPRD:03820	NCAPH	BRRN1|CAP-H	non-SMC condensin I complex, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_60097	chr20	19965788	19966000	+	7.38315	NA	intron (NM_001242581, intron 8 of 11)	intron (NM_001242581, intron 8 of 11)	-32040	NM_181528	51126	Hs.368783	NM_016100	HPRD:07136	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_60912	chr20	36527343	36527552	+	7.38216	NA	Intergenic	Intergenic	-4052	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_66687	chr3	12791877	12791986	+	7.38205	NA	intron (NM_001284406, intron 1 of 11)	intron (NM_001284406, intron 1 of 11)	8877	NM_001284407	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_48074	chr19	18572737	18572892	+	7.38205	NA	intron (NM_006532, intron 4 of 11)	intron (NM_006532, intron 4 of 11)	-23703	NM_001170938	51477	Hs.405873	NM_016368	HPRD:17163	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_21483	chr11	118116030	118116199	+	7.38205	NA	intron (NR_104405, intron 1 of 4)	intron (NR_104405, intron 1 of 4)	6969	NR_104404	196264	Hs.15396	NM_198275		MPZL3	-	myelin protein zero-like 3	protein-coding
19-PTNLD28-TUMOR_peak_107133	chrUn_gl000222	148774	148904	+	7.38205	NA	Intergenic	HERVE-int|LTR|ERV1	-59529	NR_037925	647476	Hs.274541	NR_037925		FLJ20518	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_16322	chr10	134210118	134210211	+	7.38205	NA	promoter-TSS (NM_138499)	promoter-TSS (NM_138499)	-538	NM_138499	170394	Hs.527751	NM_138499	HPRD:11465	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_10507	chr1	226683235	226683404	+	7.38205	NA	Intergenic	Intergenic	-53182	NM_001003665	375057	Hs.116827	NM_001003665	HPRD:16821	C1orf95	-	chromosome 1 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_47050	chr19	8400021	8400194	+	7.38205	NA	exon (NM_198471, exon 3 of 11)	exon (NM_198471, exon 3 of 11)	8039	NM_198471	256949	Hs.745036	NM_198471	HPRD:13520	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
19-PTNLD28-TUMOR_peak_38439	chr16	68738277	68738492	+	7.38157	NA	Intergenic	Intergenic	-32811	NM_004360	999	Hs.461086	NM_004360	HPRD:01885	CDH1	Arc-1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1, type 1, E-cadherin (epithelial)	protein-coding
19-PTNLD28-TUMOR_peak_30667	chr14	61994198	61994330	+	7.38157	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	42648	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_86666	chr6	31802633	31802769	+	7.37795	NA	promoter-TSS (NM_001287482).2	promoter-TSS (NM_001287482).2	9	NM_001287484	50854	Hs.640836	NM_016947	HPRD:12015	C6orf48	D6S57|G8	chromosome 6 open reading frame 48	protein-coding
19-PTNLD28-TUMOR_peak_105998	chr9	126118451	126118539	+	7.37795	NA	promoter-TSS (NM_173689)	promoter-TSS (NM_173689)	49	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_72803	chr3	184320578	184320841	+	7.37763	NA	Intergenic	Intergenic	41122	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_83586	chr5	159343384	159343541	+	7.37435	NA	promoter-TSS (NM_000679)	promoter-TSS (NM_000679)	-278	NM_000679	147	Hs.368632	NM_000679		ADRA1B	ADRA1|ALPHA1BAR	adrenoceptor alpha 1B	protein-coding
19-PTNLD28-TUMOR_peak_1118	chr1	17036348	17036502	+	7.37393	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	10227	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_85993	chr6	24856342	24856458	+	7.37159	NA	intron (NM_001286447, intron 8 of 13)	intron (NM_001286447, intron 8 of 13)	21193	NM_015864	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_76426	chr4	103265651	103265953	+	7.36951	NA	exon (NM_001135147, exon 2 of 11)	exon (NM_001135147, exon 2 of 11)	546	NM_022154	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_20098	chr11	75378629	75378799	+	7.36951	NA	exon (NM_207577, exon 1 of 3)	exon (NM_207577, exon 1 of 3)	765	NM_207577	4135	Hs.585540	NM_033063	HPRD:15989	MAP6	MTAP6|N-STOP|STOP	microtubule-associated protein 6	protein-coding
19-PTNLD28-TUMOR_peak_62292	chr20	56120011	56120458	+	7.36951	NA	Intergenic	Intergenic	-15903	NM_002591	5105	Hs.1872	NM_002591	HPRD:02028	PCK1	PEPCK-C|PEPCK1|PEPCKC	phosphoenolpyruvate carboxykinase 1 (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_109500	chrX	132546354	132546475	+	7.36951	NA	intron (NM_001448, intron 1 of 8)	intron (NM_001448, intron 1 of 8)	2791	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
19-PTNLD28-TUMOR_peak_70455	chr3	125776187	125776362	+	7.36951	NA	promoter-TSS (NM_001008487)	promoter-TSS (NM_001008487)	-656	NM_001008487	54946	Hs.573007	NM_017836	HPRD:11580	SLC41A3	SLC41A1-L2	solute carrier family 41, member 3	protein-coding
19-PTNLD28-TUMOR_peak_4634	chr1	86047043	86047154	+	7.36951	NA	exon (NM_001554, exon 2 of 5)	exon (NM_001554, exon 2 of 5)	654	NM_001554	3491	Hs.8867	NM_001554	HPRD:09089	CYR61	CCN1|GIG1|IGFBP10	cysteine-rich, angiogenic inducer, 61	protein-coding
19-PTNLD28-TUMOR_peak_26249	chr12	110498075	110498262	+	7.36951	NA	intron (NM_207435, intron 2 of 4)	L2|LINE|L2	7332	NM_207435	400073	Hs.44817	NM_207435	HPRD:13443	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
19-PTNLD28-TUMOR_peak_8265	chr1	173398705	173398862	+	7.36951	NA	intron (NR_037845, intron 2 of 2)	L2a|LINE|L2	47511	NR_037845	100506023	Hs.731284	NR_037845		LOC100506023	-	uncharacterized LOC100506023	ncRNA
19-PTNLD28-TUMOR_peak_34410	chr15	73344802	73345119	+	7.36951	NA	5' UTR (NM_001172624, exon 1 of 28)	5' UTR (NM_001172624, exon 1 of 28)	135	NM_001172623	4756	Hs.388613	NM_002499	HPRD:03549	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
19-PTNLD28-TUMOR_peak_99840	chr8	103141781	103141881	+	7.36951	NA	Intergenic	L1ME1|LINE|L1	4171	NR_049859	100847001		NR_049859	miRBase:MI0019280	MIR5680	-	microRNA 5680	ncRNA
19-PTNLD28-TUMOR_peak_51835	chr2	28788847	28788969	+	7.36951	NA	intron (NM_001170585, intron 19 of 56)	intron (NM_001170585, intron 19 of 56)	69970	NM_153021	151056	Hs.444933	NM_153021	HPRD:15141	PLB1	PLB|PLB/LIP|hPLB	phospholipase B1	protein-coding
19-PTNLD28-TUMOR_peak_95665	chr7	137602581	137602849	+	7.36951	NA	intron (NM_194071, intron 2 of 11)	intron (NM_194071, intron 2 of 11)	-35379	NM_001243523	100130880	Hs.712161	NM_001243523		LOC100130880	-	uncharacterized LOC100130880	protein-coding
19-PTNLD28-TUMOR_peak_79551	chr5	37837605	37837701	+	7.36951	NA	intron (NM_000514, intron 1 of 2)	CpG	-1724	NM_001190468	2668	Hs.248114	NM_000514	HPRD:02906	GDNF	ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_108617	chrX	68152540	68152828	+	7.36219	NA	Intergenic	Intergenic	103844	NM_004429	1947	Hs.144700	NM_004429	HPRD:02072	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin-B1	protein-coding
19-PTNLD28-TUMOR_peak_64248	chr22	18403168	18403310	+	7.36219	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-13587	NM_001136004	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_43703	chr17	76124107	76124239	+	7.36219	NA	intron (NM_007267, intron 1 of 19)	intron (NM_007267, intron 1 of 19)	688	NM_001127198	11322	Hs.632227	NM_007267	HPRD:08386	TMC6	EV1|EVER1|EVIN1|LAK-4P	transmembrane channel-like 6	protein-coding
19-PTNLD28-TUMOR_peak_103520	chr9	68380384	68380526	+	7.36203	NA	Intergenic	CpG	73920	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99028	chr8	67025926	67026507	+	7.36203	NA	Intergenic	Intergenic	-13062	NM_184087	84675	Hs.85524	NM_033058	HPRD:05927	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
19-PTNLD28-TUMOR_peak_59681	chr20	6032365	6032455	+	7.36188	NA	intron (NM_152611, intron 2 of 4)	intron (NM_152611, intron 2 of 4)	2316	NM_152611	164312	Hs.149133	NM_152611	HPRD:12784	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
19-PTNLD28-TUMOR_peak_41699	chr17	42296812	42296986	+	7.36188	NA	5' UTR (NM_014233, exon 1 of 21)	5' UTR (NM_014233, exon 1 of 21)	142	NM_001076684	7343	Hs.89781	NM_014233	HPRD:02814	UBTF	NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor, RNA polymerase I	protein-coding
19-PTNLD28-TUMOR_peak_28234	chr13	50069676	50069801	+	7.35966	NA	promoter-TSS (NM_001040443)	promoter-TSS (NM_001040443)	-63	NM_001040443	51131	Hs.369039	NM_016119	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
19-PTNLD28-TUMOR_peak_84734	chr6	1575492	1576039	+	7.35966	NA	Intergenic	Intergenic	-30001	NR_125804	101927703	Hs.607964	NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_97845	chr8	27512258	27512575	+	7.35966	NA	intron (NM_016240, intron 3 of 5)	intron (NM_016240, intron 3 of 5)	20839	NM_016240	51435	Hs.128856	NM_016240	HPRD:04104	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding
19-PTNLD28-TUMOR_peak_18995	chr11	62349776	62349942	+	7.35966	NA	intron (NM_022830, intron 2 of 8)	AluJb|SINE|Alu	-8399	NM_001404	1937	Hs.144835	NM_001404	HPRD:11745	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
19-PTNLD28-TUMOR_peak_48756	chr19	36560762	36560869	+	7.35966	NA	intron (NM_173636, intron 7 of 31)	SVA_C|Other|Other	15032	NM_001083961	284403	Hs.116244	NM_173636	HPRD:10721	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
19-PTNLD28-TUMOR_peak_87824	chr6	46946878	46947010	+	7.35966	NA	Intergenic	MER77B|LTR|ERVL	-24269	NM_015234	221395	Hs.362806	NM_015234	HPRD:11010	GPR116	KPG_001	G protein-coupled receptor 116	protein-coding
19-PTNLD28-TUMOR_peak_106889	chr9	140785365	140785476	+	7.35966	NA	non-coding (NR_121583, exon 1 of 4)	non-coding (NR_121583, exon 1 of 4)	1602	NR_121583	100133077	Hs.640081	NR_121583	ENSG00000203987	LOC100133077	-	uncharacterized LOC100133077	ncRNA
19-PTNLD28-TUMOR_peak_22343	chr12	187151	187391	+	7.35966	NA	intron (NM_015232, intron 1 of 12)	CpG	729	NM_015232	440073	Hs.536319	NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain 3	protein-coding
19-PTNLD28-TUMOR_peak_79574	chr5	38556477	38556775	+	7.35966	NA	promoter-TSS (NR_103554)	promoter-TSS (NR_103554)	122	NM_001127671	3977	Hs.133421	NM_002310	HPRD:01048	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_41986	chr17	45908398	45908753	+	7.35966	NA	promoter-TSS (NM_033413)	promoter-TSS (NM_033413)	332	NM_148887	124995	Hs.347535	NM_145255	HPRD:14738	MRPL10	L10MT|MRP-L10|MRP-L8|MRPL8|RPML8	mitochondrial ribosomal protein L10	protein-coding
19-PTNLD28-TUMOR_peak_23639	chr12	31743610	31743978	+	7.35966	NA	5' UTR (NM_144973, exon 1 of 21)	5' UTR (NM_144973, exon 1 of 21)	158	NM_144973	160518	Hs.118166	NM_144973	HPRD:11321	DENND5B	-	DENN/MADD domain containing 5B	protein-coding
19-PTNLD28-TUMOR_peak_21816	chr11	123457853	123458035	+	7.35821	NA	intron (NM_001286563, intron 4 of 20)	intron (NM_001286563, intron 4 of 20)	26974	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_37415	chr16	32359217	32359488	+	7.35821	NA	Intergenic	Intergenic	-58050	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_86954	chr6	34625800	34625896	+	7.35821	NA	intron (NM_022758, intron 1 of 3)	AluSz|SINE|Alu	38779	NM_024294	64771	Hs.643498	NM_022758	HPRD:12837	C6orf106	FP852|dJ391O22.4	chromosome 6 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_66879	chr3	15170044	15170154	+	7.35821	NA	Intergenic	Intergenic	-29444	NM_022340	64145	Hs.475565	NM_022340	HPRD:15732	ZFYVE20	Rabenosyn-5	zinc finger, FYVE domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_70981	chr3	134052465	134052611	+	7.35743	NA	Intergenic	Intergenic	34166	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
19-PTNLD28-TUMOR_peak_66988	chr3	17080786	17080973	+	7.35711	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	106191	NR_037465	100500913		NR_037465	miRBase:MI0016135	MIR3714	-	microRNA 3714	ncRNA
19-PTNLD28-TUMOR_peak_20852	chr11	102188419	102188514	+	7.35711	NA	intron (NM_182962, intron 1 of 9)	intron (NM_182962, intron 1 of 9)	285	NM_001165	330	Hs.127799	NM_001165	HPRD:03426	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_46471	chr19	222898	223002	+	7.35711	NA	Intergenic	AluJr4|SINE|Alu	-20741	NR_028324	399844	Hs.356758	NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
19-PTNLD28-TUMOR_peak_26035	chr12	106642325	106642456	+	7.35651	NA	promoter-TSS (NM_006825)	promoter-TSS (NM_006825)	-677	NM_006825	10970	Hs.74368	NM_006825	HPRD:16717	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_76543	chr4	109094015	109094176	+	7.35313	NA	non-coding (NR_029373, exon 1 of 3)	non-coding (NR_029373, exon 1 of 3)	819	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	-	LEF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_68606	chr3	58473140	58473228	+	7.35313	NA	Intergenic	L2b|LINE|L2	-4639	NM_001128214	200845	Hs.13982	NM_153331	HPRD:13769	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_76348	chr4	99181824	99182094	+	7.35313	NA	promoter-TSS (NM_001100429)	promoter-TSS (NM_001100429)	-568	NM_001100430	5910	Hs.132858	NM_021159	HPRD:11763	RAP1GDS1	GDS1|SmgGDS	RAP1, GTP-GDP dissociation stimulator 1	protein-coding
19-PTNLD28-TUMOR_peak_82528	chr5	138893216	138893345	+	7.35313	NA	Intergenic	Intergenic	-30937	NM_198282	340061	Hs.379754	NM_198282		TMEM173	ERIS|MITA|MPYS|NET23|SAVI|STING	transmembrane protein 173	protein-coding
19-PTNLD28-TUMOR_peak_94999	chr7	122527434	122527530	+	7.35313	NA	promoter-TSS (NM_001167940)	promoter-TSS (NM_001167940)	-669	NM_017954	93664	Hs.649459	NM_017954	HPRD:12996	CADPS2	-	Ca++-dependent secretion activator 2	protein-coding
19-PTNLD28-TUMOR_peak_99659	chr8	99370542	99370647	+	7.35313	NA	Intergenic	Intergenic	-63973	NM_024759	79815	Hs.309489	NM_024759		NIPAL2	NPAL2	NIPA-like domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_2123	chr1	32706972	32707126	+	7.35313	NA	non-coding (NR_026850, exon 1 of 7)	non-coding (NR_026850, exon 1 of 7)	262	NR_026850	339483	Hs.471067	NR_026850		MTMR9LP	MTMR9L	myotubularin related protein 9-like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_94292	chr7	99939036	99939151	+	7.35171	NA	TTS (NR_103720)	TTS (NR_103720)	-5163	NR_003613	5379	Hs.634244	NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	postmeiotic segregation increased 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_87182	chr6	37139938	37140054	+	7.34949	NA	intron (NM_001243186, intron 4 of 5)	intron (NM_001243186, intron 4 of 5)	2074	NM_001243186	5292	Hs.81170	NM_002648	HPRD:01292	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_38386	chr16	67962521	67962610	+	7.34791	NA	TTS (NM_001907)	TTS (NM_001907)	3213	NM_001907	1506	Hs.654546	NM_001907		CTRL	CTRL1	chymotrypsin-like	protein-coding
19-PTNLD28-TUMOR_peak_21675	chr11	121163873	121163961	+	7.34791	NA	intron (NM_001024956, intron 1 of 4)	CpG	340	NM_001024956	6309	Hs.287749	NM_006918		SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
19-PTNLD28-TUMOR_peak_76937	chr4	124476672	124476808	+	7.34791	NA	Intergenic	Intergenic	-97200	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_73017	chr3	187387559	187387727	+	7.34791	NA	intron (NM_001048, intron 1 of 1)	intron (NM_001048, intron 1 of 1)	558	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_67378	chr3	31291757	31291894	+	7.34791	NA	Intergenic	LTR78|LTR|ERV1	-282168	NM_178862	201595	Hs.475812	NM_178862		STT3B	CDG1X|SIMP|STT3-B	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_100763	chr8	127626359	127626681	+	7.34791	NA	Intergenic	L1MC4a|LINE|L1	-55809	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_38727	chr16	75077063	75077190	+	7.34791	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	44211	NM_032268	84937	Hs.427284	NM_032268	HPRD:15893	ZNRF1	NIN283	zinc and ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_40814	chr17	27223994	27224083	+	7.34791	NA	TTS (NM_144683)	TTS (NM_144683)	677	NM_004475	2319	Hs.514038	NM_004475	HPRD:00580	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
19-PTNLD28-TUMOR_peak_109301	chrX	118827058	118827190	+	7.34791	NA	5' UTR (NM_015129, exon 1 of 10)	5' UTR (NM_015129, exon 1 of 10)	209	NM_145802	23157	Hs.496666	NM_015129	HPRD:06716	SEPT6	SEP2|SEPT2	septin 6	protein-coding
19-PTNLD28-TUMOR_peak_70644	chr3	128424982	128425116	+	7.34791	NA	Intergenic	AluSx|SINE|Alu	-19930	NM_004637	7879	Hs.744853	NM_004637	HPRD:03805	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_42102	chr17	47210057	47210365	+	7.34791	NA	promoter-TSS (NM_001159387)	promoter-TSS (NM_001159387)	80	NM_001159387	124872	Hs.374679	NM_153446	HPRD:13558	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_42697	chr17	58168598	58168705	+	7.34791	NA	Intergenic	Intergenic	-2823	NR_030732	645638	Hs.463652	NR_030732	ENSG00000261040	WFDC21P	LNCDC|lnc-DC	WAP four-disulfide core domain 21, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_69961	chr3	115519375	115519501	+	7.34791	NA	Intergenic	AluSc|SINE|Alu	177287	NM_001130064	2596	Hs.134974	NM_002045	HPRD:01198	GAP43	B-50|PP46	growth associated protein 43	protein-coding
19-PTNLD28-TUMOR_peak_12763	chr10	31100972	31101249	+	7.34791	NA	Intergenic	Intergenic	119907	NR_036438	645954	Hs.408581	NR_036438	ENSG00000234814	SVILP1	-	supervillin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_90982	chr7	3299891	3299986	+	7.34791	NA	Intergenic	MER41A|LTR|ERV1	-41142	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_57475	chr2	191624515	191624614	+	7.34791	NA	Intergenic	Intergenic	110716	NM_005966	4664	Hs.107474	NM_005966	HPRD:02881	NAB1	-	NGFI-A binding protein 1 (EGR1 binding protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_70598	chr3	127831349	127831572	+	7.34791	NA	intron (NM_003707, intron 3 of 10)	intron (NM_003707, intron 3 of 10)	11211	NM_003707	8607	Hs.272822	NM_003707	HPRD:09143	RUVBL1	ECP54|INO80H|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB-like AAA ATPase 1	protein-coding
19-PTNLD28-TUMOR_peak_70621	chr3	128158228	128158350	+	7.34791	NA	Intergenic	LTR16E2|LTR|ERVL	-24148	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58282	chr2	216973808	216973914	+	7.34791	NA	promoter-TSS (NM_021141)	promoter-TSS (NM_021141)	-159	NM_021141	7520	Hs.388739	NM_021141	HPRD:08935	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)	protein-coding
19-PTNLD28-TUMOR_peak_2048	chr1	32040697	32040862	+	7.34656	NA	Intergenic	Intergenic	-1307	NM_001204414	64129	Hs.199368	NM_022164	HPRD:07122	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_46977	chr19	7598952	7599102	+	7.34559	NA	promoter-TSS (NM_001166113)	promoter-TSS (NM_001166113)	-11	NM_006702	10908	Hs.631863	NM_006702	HPRD:04432	PNPLA6	BNHS|NTE|NTEMND|SPG39|iPLA2delta|sws	patatin-like phospholipase domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_5344	chr1	109654800	109654905	+	7.34559	NA	intron (NM_001122961, intron 1 of 4)	intron (NM_001122961, intron 1 of 4)	1627	NM_001122961	127003	Hs.446962	NM_001122961	ENSG00000179902	C1orf194	-	chromosome 1 open reading frame 194	protein-coding
19-PTNLD28-TUMOR_peak_45993	chr18	57025313	57025404	+	7.34559	NA	intron (NM_005570, intron 1 of 12)	intron (NM_005570, intron 1 of 12)	1150	NM_005570	3998	Hs.465295	NM_005570	HPRD:03338	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose-binding, 1	protein-coding
19-PTNLD28-TUMOR_peak_104898	chr9	100746844	100747280	+	7.34330	NA	intron (NM_006401, intron 1 of 6)	CpG	1573	NM_006401	10541	Hs.730654	NM_006401	HPRD:09803	ANP32B	APRIL|PHAPI2|SSP29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_14043	chr10	71209683	71209812	+	7.34330	NA	Intergenic	Intergenic	-1479	NM_012339	23555	Hs.499941	NM_012339	HPRD:15511	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
19-PTNLD28-TUMOR_peak_73971	chr4	3370864	3371031	+	7.34330	NA	promoter-TSS (NM_198227)	promoter-TSS (NM_198227)	-777	NM_198227	6002	Hs.527061	NM_002926	HPRD:03943	RGS12	-	regulator of G-protein signaling 12	protein-coding
19-PTNLD28-TUMOR_peak_18734	chr11	58869747	58869921	+	7.34330	NA	Intergenic	CpG	-4824	NM_198947	374393	Hs.186579	NM_198947	HPRD:07096	FAM111B	CANP|POIKTMP	family with sequence similarity 111, member B	protein-coding
19-PTNLD28-TUMOR_peak_2815	chr1	41707677	41707799	+	7.34330	NA	promoter-TSS (NM_001172220)	promoter-TSS (NM_001172220)	77	NM_001172218	22955	Hs.571874	NM_012236	HPRD:11540	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_95271	chr7	129916758	129916896	+	7.34019	NA	intron (NM_001869, intron 7 of 10)	intron (NM_001869, intron 7 of 10)	10124	NM_001869	1358	Hs.490038	NM_001869	HPRD:02821	CPA2	-	carboxypeptidase A2 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_32821	chr15	30698080	30698181	+	7.34011	NA	intron (NM_001282484, intron 13 of 18)	intron (NM_001282484, intron 13 of 18)	8333	NM_001282484	101059918		NM_001282484		GOLGA8R	-	golgin A8 family, member R	protein-coding
19-PTNLD28-TUMOR_peak_4919	chr1	93915098	93915215	+	7.34011	NA	intron (NM_001024948, intron 1 of 13)	L3|LINE|CR1	1468	NM_001024948	54874	Hs.134060	NM_017737	HPRD:12317	FNBP1L	C1orf39|TOCA1	formin binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_27016	chr12	125251576	125251732	+	7.34011	NA	Intergenic	Intergenic	96865	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_30735	chr14	64337272	64337400	+	7.34011	NA	intron (NM_182914, intron 1 of 115)	MIR|SINE|MIR	17653	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_101458	chr8	142216727	142216848	+	7.34011	NA	TTS (NM_001080431)	TTS (NM_001080431)	21886	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45, member 4	protein-coding
19-PTNLD28-TUMOR_peak_47728	chr19	15528591	15528698	+	7.33921	NA	intron (NR_111971, intron 1 of 15)	intron (NR_111971, intron 1 of 15)	1288	NR_111971	26993	Hs.399800	NM_014371	HPRD:10641	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A kinase (PRKA) anchor protein 8-like	protein-coding
19-PTNLD28-TUMOR_peak_53850	chr2	86116433	86116525	+	7.33665	NA	promoter-TSS (NM_003896)	promoter-TSS (NM_003896)	76	NR_110569	101928113	Hs.625888	NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_61947	chr20	50434973	50435115	+	7.33487	NA	Intergenic	L2a|LINE|L2	-15996	NM_020436	57167	Hs.517113	NM_020436	HPRD:08458	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	spalt-like transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_79550	chr5	37814896	37815133	+	7.33487	NA	3' UTR (NM_000514, exon 3 of 3)	3' UTR (NM_000514, exon 3 of 3)	19910	NM_001278098	2668	Hs.248114	NM_000514	HPRD:02906	GDNF	ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_15270	chr10	102921562	102921772	+	7.33487	NA	Intergenic	Intergenic	-14412	NR_120620	101927396	Hs.551648	NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
19-PTNLD28-TUMOR_peak_108586	chrX	66913890	66914068	+	7.33487	NA	intron (NM_001011645, intron 3 of 7)	intron (NM_001011645, intron 3 of 7)	125296	NM_001011645	367	Hs.76704	NM_000044	HPRD:02437	AR	AIS|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM	androgen receptor	protein-coding
19-PTNLD28-TUMOR_peak_98676	chr8	49541256	49541433	+	7.33487	NA	intron (NR_105002, intron 2 of 3)	L1MC3|LINE|L1	8381	NR_105004	101929217	Hs.547790	NR_105004	ENSG00000253455	LOC101929217	-	uncharacterized LOC101929217	ncRNA
19-PTNLD28-TUMOR_peak_53872	chr2	86306054	86306186	+	7.33487	NA	intron (NM_015425, intron 9 of 33)	intron (NM_015425, intron 9 of 33)	27158	NM_015425	25885	Hs.531818	NM_015425	HPRD:10161	POLR1A	A190|RPA1|RPA194|RPO1-4|RPO14	polymerase (RNA) I polypeptide A, 194kDa	protein-coding
19-PTNLD28-TUMOR_peak_5715	chr1	115690497	115690977	+	7.33487	NA	Intergenic	L1PA2|LINE|L1	-58616	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_107399	chrX	3181911	3182044	+	7.33487	NA	Intergenic	Intergenic	-7884	NR_038428	100129464	Hs.187816	NR_038428	ENSG00000228459	CXorf28	-	chromosome X open reading frame 28	ncRNA
19-PTNLD28-TUMOR_peak_100124	chr8	111945532	111945620	+	7.33487	NA	Intergenic	Intergenic	94086	NR_125417	101927459	Hs.575543	NR_125416		LOC101927459	-	uncharacterized LOC101927459	ncRNA
19-PTNLD28-TUMOR_peak_27860	chr13	37281000	37281119	+	7.33487	NA	Intergenic	L2a|LINE|L2	33010	NM_203451	400120	Hs.422375	NM_203451	HPRD:14219	SERTM1	C13orf36	serine-rich and transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_102158	chr9	8857963	8858068	+	7.33487	NA	promoter-TSS (NR_121599)	promoter-TSS (NR_121599)	-3	NR_121600	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99572	chr8	96079392	96079486	+	7.33487	NA	Intergenic	Intergenic	-5703	NR_036105	100422964		NR_036105		MIR3150A	MIR3150	microRNA 3150a	ncRNA
19-PTNLD28-TUMOR_peak_48442	chr19	30349046	30349135	+	7.33487	NA	Intergenic	Intergenic	46189	NM_001238	898	Hs.244723	NM_001238	HPRD:00455	CCNE1	CCNE	cyclin E1	protein-coding
19-PTNLD28-TUMOR_peak_107756	chrX	20610064	20610258	+	7.33487	NA	Intergenic	L1MA2|LINE|L1	-325411	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_63788	chr21	44115862	44116009	+	7.33487	NA	intron (NM_001001577, intron 2 of 15)	intron (NM_001001577, intron 2 of 15)	42073	NM_001001572	5152	Hs.473927	NM_002606	HPRD:09115	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
19-PTNLD28-TUMOR_peak_11412	chr1	244778409	244778505	+	7.33487	NA	intron (NM_173807, intron 19 of 20)	intron (NM_173807, intron 19 of 20)	-37893	NM_001297746	51029	Hs.498317	NM_016076	HPRD:15153	DESI2	C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_72633	chr3	181500474	181500593	+	7.33487	NA	Intergenic	HAL1|LINE|L1	70821	NM_003106	6657	Hs.518438	NM_003106	HPRD:08921	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
19-PTNLD28-TUMOR_peak_100330	chr8	120106312	120106420	+	7.33487	NA	intron (NM_006438, intron 3 of 5)	Arthur1B|DNA|hAT-Tip100	26942	NM_006438	10584	Hs.176615	NM_006438		COLEC10	CLL1	collectin sub-family member 10 (C-type lectin)	protein-coding
19-PTNLD28-TUMOR_peak_44516	chr18	9808763	9808894	+	7.33487	NA	intron (NM_006868, intron 3 of 6)	intron (NM_006868, intron 3 of 6)	-76895	NM_032243	84203	Hs.98712	NM_032243	HPRD:11654	TXNDC2	SPTRX|SPTRX1	thioredoxin domain containing 2 (spermatozoa)	protein-coding
19-PTNLD28-TUMOR_peak_106566	chr9	136060505	136060642	+	7.33487	NA	Intergenic	L1MB7|LINE|L1	-21241	NM_001288573	26301	Hs.495419	NM_021996	HPRD:16193	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_41910	chr17	44848479	44848623	+	7.33459	NA	intron (NM_030753, intron 2 of 4)	CpG	47575	NM_030753	7473	Hs.445884	NM_030753	HPRD:01318	WNT3	INT4	wingless-type MMTV integration site family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_108787	chrX	75369135	75369317	+	7.33459	NA	Intergenic	CpG	-23538	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63274	chr21	35286607	35286774	+	7.33459	NA	intron (NM_001697, intron 2 of 6)	intron (NM_001697, intron 2 of 6)	1468	NM_001697	539	Hs.409140	NM_001697	HPRD:02899	ATP5O	ATPO|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
19-PTNLD28-TUMOR_peak_40003	chr17	7590657	7590920	+	7.33459	NA	promoter-TSS (NM_001143992)	promoter-TSS (NM_001143992)	30	NM_001143991	55135	Hs.408312	NM_018081	HPRD:07670	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing, antisense to TP53	protein-coding
19-PTNLD28-TUMOR_peak_48637	chr19	35521290	35521424	+	7.33364	NA	promoter-TSS (NM_001037)	promoter-TSS (NM_001037)	-235	NM_199037	6324	Hs.436646	NM_001037	HPRD:02581	SCN1B	ATFB13|BRGDA5|GEFSP1	sodium channel, voltage-gated, type I, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_13280	chr10	45374262	45374420	+	7.33364	NA	intron (NR_033842, intron 2 of 7)	intron (NR_033842, intron 2 of 7)	-32423	NM_001123376	643236	Hs.292788	NM_001123376		TMEM72	C10orf127|KSP37|bA285G1.3	transmembrane protein 72	protein-coding
19-PTNLD28-TUMOR_peak_42133	chr17	47559915	47560013	+	7.33364	NA	Intergenic	Intergenic	-12691	NM_002507	4804	Hs.415768	NM_002507	HPRD:01197	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_90279	chr6	158653800	158654142	+	7.33364	NA	Intergenic	CpG	64592	NM_207118	404672	Hs.356224	NM_207118	HPRD:10581	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2	general transcription factor IIH, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_71697	chr3	150167039	150167147	+	7.33364	NA	intron (NM_014779, intron 2 of 3)	intron (NM_014779, intron 2 of 3)	40305	NM_014779	9819	Hs.722470	NM_014779	HPRD:11101	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_20191	chr11	76859209	76859360	+	7.33364	NA	intron (NM_001127180, intron 4 of 48)	intron (NM_001127180, intron 4 of 48)	19968	NM_001127180	4647	Hs.370421	NM_000260	HPRD:02043	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
19-PTNLD28-TUMOR_peak_33186	chr15	40803920	40804104	+	7.33364	NA	Intergenic	CpG	20737	NR_002208	359821	Hs.678598	NR_002208		MRPL42P5	-	mitochondrial ribosomal protein L42 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_72120	chr3	161089324	161090054	+	7.33364	NA	5' UTR (NM_001040100, exon 1 of 3)	5' UTR (NM_001040100, exon 1 of 3)	182	NM_001040100	165679	Hs.369104	NM_145035		SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase, small subunit B	protein-coding
19-PTNLD28-TUMOR_peak_44669	chr18	12660099	12660311	+	7.33364	NA	intron (NM_147163, intron 1 of 6)	intron (NM_147163, intron 1 of 6)	1467	NM_147163	56984	Hs.464652	NM_020232	HPRD:11638	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding
19-PTNLD28-TUMOR_peak_65438	chr22	38035449	38035707	+	7.33364	NA	promoter-TSS (NM_018957)	promoter-TSS (NM_018957)	-106	NM_018957	23616	Hs.601143	NM_018957	HPRD:10227	SH3BP1	ARHGAP43	SH3-domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_22207	chr11	130651909	130652039	+	7.33364	NA	Intergenic	MIRb|SINE|MIR	80031	NR_125383	100507431	Hs.375101	NR_125383		LOC100507431	-	uncharacterized LOC100507431	ncRNA
19-PTNLD28-TUMOR_peak_6270	chr1	145177458	145177615	+	7.33364	NA	intron (NM_001277444, intron 20 of 24)	intron (NM_001277444, intron 20 of 24)	-31577	NM_203458	388677	Hs.655156	NM_203458	HPRD:14833	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_46838	chr19	5091122	5091433	+	7.33364	NA	intron (NM_015015, intron 9 of 22)	intron (NM_015015, intron 9 of 22)	122153	NM_015015	23030	Hs.654816	NM_015015	HPRD:11056	KDM4B	JMJD2B|TDRD14B	lysine (K)-specific demethylase 4B	protein-coding
19-PTNLD28-TUMOR_peak_104935	chr9	101219993	101220147	+	7.32801	NA	intron (NM_005458, intron 6 of 18)	intron (NM_005458, intron 6 of 18)	-202067	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_36482	chr16	15436259	15436413	+	7.32801	NA	Intergenic	Intergenic	35815	NM_001277325	100288332	Hs.676266	NM_001277325	ENSG00000183793	NPIPA5	NPIP	nuclear pore complex interacting protein family, member A5	protein-coding
19-PTNLD28-TUMOR_peak_24537	chr12	54535961	54536114	+	7.32801	NA	Intergenic	Intergenic	16182	NR_026656	400043	Hs.19193	NR_026656	ENSG00000250742	LOC400043	-	uncharacterized LOC400043	ncRNA
19-PTNLD28-TUMOR_peak_105340	chr9	112402907	112403277	+	7.32801	NA	promoter-TSS (NM_001037293)	promoter-TSS (NM_001037293)	24	NM_001037293	114299	Hs.591908	NM_053016	HPRD:17817	PALM2	AKAP2	paralemmin 2	protein-coding
19-PTNLD28-TUMOR_peak_35728	chr16	1544428	1544605	+	7.32801	NA	exon (NM_016111, exon 2 of 21)	exon (NM_016111, exon 2 of 21)	1164	NM_016111	9894	Hs.271044	NM_016111	HPRD:10016	TELO2	CLK2|TEL2	telomere maintenance 2	protein-coding
19-PTNLD28-TUMOR_peak_52371	chr2	43150288	43150439	+	7.32801	NA	Intergenic	Intergenic	116319	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_93047	chr7	69246421	69246533	+	7.32801	NA	intron (NM_001127231, intron 1 of 17)	intron (NM_001127231, intron 1 of 17)	182572	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_7184	chr1	155196444	155196614	+	7.32478	NA	intron (NR_002188, intron 1 of 12)	L2c|LINE|L2	796	NR_002188	2630	Hs.719930	NR_002188	ENSG00000160766	GBAP1	GBAP	glucosidase, beta, acid pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_15151	chr10	99676284	99676706	+	7.32474	NA	intron (NM_018058, intron 5 of 14)	intron (NM_018058, intron 5 of 14)	66500	NM_001010917	401647	Hs.567524	NM_001010917	HPRD:16579	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_65435	chr22	38009699	38009804	+	7.32474	NA	intron (NM_001172688, intron 2 of 17)	L2c|LINE|L2	4704	NM_001172688	26088	Hs.499158	NM_013365	HPRD:12078	GGA1	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_8027	chr1	168090752	168090840	+	7.32474	NA	intron (NM_001267610, intron 1 of 6)	intron (NM_001267610, intron 1 of 6)	14878	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_69151	chr3	75668785	75668934	+	7.32474	NA	Intergenic	CpG	-11055	NR_031714	100302212		NR_031714	miRBase:MI0006657	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
19-PTNLD28-TUMOR_peak_57441	chr2	190627897	190628000	+	7.32474	NA	promoter-TSS (NM_022353)	promoter-TSS (NM_022353)	-24	NM_022353	64172	Hs.60772	NM_022353	HPRD:07026	OSGEPL1	Qri7	O-sialoglycoprotein endopeptidase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_72627	chr3	181429583	181429727	+	7.32474	NA	promoter-TSS (NM_003106)	promoter-TSS (NM_003106)	-57	NM_003106	6657	Hs.518438	NM_003106	HPRD:08921	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
19-PTNLD28-TUMOR_peak_101901	chr9	589526	589711	+	7.32474	NA	intron (NM_001256877, intron 2 of 12)	intron (NM_001256877, intron 2 of 12)	84923	NM_015158	23189	Hs.306764	NM_015158	HPRD:09651	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_86910	chr6	34035660	34035815	+	7.32474	NA	intron (NM_001282847, intron 2 of 9)	intron (NM_001282847, intron 2 of 9)	38022	NM_001256813	2914	Hs.429018	NM_000841	HPRD:04978	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate receptor, metabotropic 4	protein-coding
19-PTNLD28-TUMOR_peak_60110	chr20	20337029	20337177	+	7.32474	NA	intron (NM_015585, intron 26 of 26)	intron (NM_015585, intron 26 of 26)	-11662	NM_002196	3642	Hs.89584	NM_002196	HPRD:02480	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
19-PTNLD28-TUMOR_peak_31366	chr14	76448863	76448972	+	7.32474	NA	promoter-TSS (NM_003239)	promoter-TSS (NM_003239)	-552	NM_003239	7043	Hs.592317	NM_003239		TGFB3	ARVD|ARVD1|RNHF|TGF-beta3	transforming growth factor, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_51226	chr2	12865510	12865659	+	7.32474	NA	intron (NR_027303, intron 2 of 2)	intron (NR_027303, intron 2 of 2)	8586	NM_021643	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_102799	chr9	34612876	34612970	+	7.32474	NA	promoter-TSS (NM_148179)	promoter-TSS (NM_148179)	-813	NM_148179	138716	Hs.15961	NM_148178	HPRD:12948	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP 25kDa subunit-like	protein-coding
19-PTNLD28-TUMOR_peak_40017	chr17	7744987	7745089	+	7.32379	NA	intron (NM_001080424, intron 1 of 21)	intron (NM_001080424, intron 1 of 21)	1803	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
19-PTNLD28-TUMOR_peak_21533	chr11	118800993	118801175	+	7.32106	NA	Intergenic	Intergenic	-19471	NM_182557	283149	Hs.414740	NM_182557		BCL9L	BCL9-2|DLNB11	B-cell CLL/lymphoma 9-like	protein-coding
19-PTNLD28-TUMOR_peak_10831	chr1	231377512	231377626	+	7.31984	NA	promoter-TSS (NM_152379)	promoter-TSS (NM_152379)	-636	NM_152379	128061	Hs.743464	NM_152379	HPRD:13204	C1orf131	-	chromosome 1 open reading frame 131	protein-coding
19-PTNLD28-TUMOR_peak_35791	chr16	2286374	2286811	+	7.31984	NA	TTS (NM_004424)	TTS (NM_004424)	124	NM_001374	1775	Hs.103503	NM_001374	HPRD:04018	DNASE1L2	DNAS1L2	deoxyribonuclease I-like 2	protein-coding
19-PTNLD28-TUMOR_peak_70949	chr3	133663663	133663821	+	7.31946	NA	intron (NM_005630, intron 10 of 13)	intron (NM_005630, intron 10 of 13)	-15086	NM_025041	80111	Hs.287691	NM_025041	HPRD:07981	C3orf36	-	chromosome 3 open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_43718	chr17	76175592	76175732	+	7.31852	NA	intron (NM_003258, intron 4 of 6)	intron (NM_003258, intron 4 of 6)	7623	NM_003258	7083	Hs.515122	NM_003258	HPRD:01771	TK1	TK2	thymidine kinase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_44479	chr18	9101855	9101950	+	7.31852	NA	promoter-TSS (NM_021074)	promoter-TSS (NM_021074)	-726	NM_021074	4729	Hs.464572	NM_021074	HPRD:02757	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_47837	chr19	16698464	16699045	+	7.31852	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-15561	NM_024881	79939	Hs.620596	NM_024881	HPRD:15373	SLC35E1	-	solute carrier family 35, member E1	protein-coding
19-PTNLD28-TUMOR_peak_50021	chr19	51471729	51472162	+	7.31667	NA	5' UTR (NM_001012965, exon 1 of 5)	5' UTR (NM_001012965, exon 1 of 5)	102	NM_001012964	5653	Hs.79361	NM_002774	HPRD:04037	KLK6	Bssp|Klk7|PRSS18|PRSS9|SP59|hK6	kallikrein-related peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_98485	chr8	42399452	42399547	+	7.31451	NA	intron (NM_001135674, intron 1 of 3)	AluY|SINE|Alu	-2143	NM_006749	6575	Hs.653173	NM_006749	HPRD:08865	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1	solute carrier family 20 (phosphate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_32179	chr14	103577699	103578059	+	7.31082	NA	TTS (NM_001077594)	TTS (NM_001077594)	11398	NM_001077594	91828	Hs.37712	NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3-like 4	protein-coding
19-PTNLD28-TUMOR_peak_54200	chr2	95825132	95825328	+	7.30693	NA	promoter-TSS (NM_032788)	promoter-TSS (NM_032788)	33	NM_032788	84874	Hs.655109	NM_032788	HPRD:15814	ZNF514	-	zinc finger protein 514	protein-coding
19-PTNLD28-TUMOR_peak_14423	chr10	77524218	77524522	+	7.30693	NA	Intergenic	Intergenic	-18149	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_22167	chr11	130260250	130260382	+	7.30693	NA	Intergenic	Intergenic	38223	NM_007037	11095	Hs.271605	NM_007037	HPRD:05531	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif, 8	protein-coding
19-PTNLD28-TUMOR_peak_20554	chr11	91679819	91680068	+	7.30693	NA	Intergenic	Intergenic	-405319	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10	FAT atypical cadherin 3	protein-coding
19-PTNLD28-TUMOR_peak_42392	chr17	53579452	53579658	+	7.30693	NA	Intergenic	L1PA2|LINE|L1	-80214	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_65655	chr22	41214971	41215069	+	7.30693	NA	intron (NR_104235, intron 1 of 10)	intron (NR_104235, intron 1 of 10)	383	NR_104236	10478	Hs.474938	NM_006358	HPRD:08425	SLC25A17	PMP34	solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17	protein-coding
19-PTNLD28-TUMOR_peak_67584	chr3	38691273	38691420	+	7.30693	NA	promoter-TSS (NM_001099405)	promoter-TSS (NM_001099405)	-182	NM_001160160	6331	Hs.517898	NM_000335	HPRD:02543	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium channel, voltage-gated, type V, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_59474	chr20	1922010	1922141	+	7.30693	NA	Intergenic	Intergenic	46249	NM_001040023	140885	Hs.581021	NM_080792	HPRD:03912	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal-regulatory protein alpha	protein-coding
19-PTNLD28-TUMOR_peak_22641	chr12	5258011	5258461	+	7.30693	NA	Intergenic	Intergenic	91042	NR_120476	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA
19-PTNLD28-TUMOR_peak_83689	chr5	165572434	165572674	+	7.30693	NA	Intergenic	L1HS|LINE|L1	780821	NR_108020	102557615		NR_108020		CTB-7E3.1	-	uncharacterized LOC102557615	ncRNA
19-PTNLD28-TUMOR_peak_2673	chr1	40138256	40138390	+	7.30693	NA	promoter-TSS (NM_032526)	promoter-TSS (NM_032526)	-613	NM_032526	84618	Hs.307006	NM_032526	HPRD:14844	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
19-PTNLD28-TUMOR_peak_20206	chr11	77271733	77271936	+	7.30693	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-28846	NM_173039	282679	Hs.503345	NM_173039	HPRD:16503	AQP11	AQPX1	aquaporin 11	protein-coding
19-PTNLD28-TUMOR_peak_47814	chr19	16497587	16497681	+	7.30693	NA	intron (NM_001258374, intron 19 of 23)	L1MEf|LINE|L1	61983	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_28231	chr13	49953361	49953449	+	7.30693	NA	intron (NM_001287339, intron 3 of 9)	SVA_F|Other|Other	22269	NM_030925	81617	Hs.87159	NM_030925	HPRD:12993	CAB39L	MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39-like	protein-coding
19-PTNLD28-TUMOR_peak_100502	chr8	124054991	124055222	+	7.30693	NA	promoter-TSS (NM_001134671)	promoter-TSS (NM_001134671)	-443	NM_001134671	79139	Hs.241576	NM_024295	HPRD:12302	DERL1	DER-1|DER1	derlin 1	protein-coding
19-PTNLD28-TUMOR_peak_10246	chr1	222959629	222959861	+	7.30693	NA	Intergenic	Intergenic	-28686	NM_032890	84976	Hs.528817	NM_032890	HPRD:06326	DISP1	DISPA	dispatched homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_37688	chr16	48651678	48651773	+	7.30693	NA	Intergenic	Intergenic	-7605	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_99852	chr8	103424007	103424205	+	7.30693	NA	intron (NM_015902, intron 1 of 58)	CpG	811	NM_001282873	51366	Hs.492445	NM_015902	HPRD:06436	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
19-PTNLD28-TUMOR_peak_96994	chr8	7774821	7774916	+	7.30693	NA	Intergenic	Intergenic	-8991	NM_001193630	100132396	Hs.546691	NM_001193630	ENSG00000215356	ZNF705B	-	zinc finger protein 705B	protein-coding
19-PTNLD28-TUMOR_peak_64019	chr21	46522465	46522568	+	7.30693	NA	intron (NR_027673, intron 1 of 12)	L1MC3|LINE|L1	28023	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_24439	chr12	53441242	53441543	+	7.30688	NA	intron (NM_198316, intron 1 of 28)	CpG	582	NM_198316	23371	Hs.6147	NM_015319	HPRD:16256	TENC1	C1-TEN|C1TEN|TNS2	tensin like C1 domain containing phosphatase (tensin 2)	protein-coding
19-PTNLD28-TUMOR_peak_41212	chr17	36413058	36413335	+	7.30560	NA	promoter-TSS (NR_036750)	promoter-TSS (NR_036750)	60	NR_036750	440434	Hs.443837	NR_036750	ENSG00000174093	LOC440434	-	aminopeptidase puromycin sensitive pseudogene	pseudo
19-PTNLD28-TUMOR_peak_2414	chr1	36622085	36622416	+	7.30328	NA	promoter-TSS (NM_001270895)	promoter-TSS (NM_001270895)	-596	NM_001270895	27095	Hs.523131	NM_014408	HPRD:11644	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
19-PTNLD28-TUMOR_peak_54960	chr2	112251946	112252102	+	7.30328	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	668	NR_015395	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_100390	chr8	121077497	121077635	+	7.30328	NA	Intergenic	Intergenic	-59781	NM_021110	7373	Hs.409662	NM_021110	HPRD:00379	COL14A1	UND	collagen, type XIV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_94474	chr7	101596811	101596987	+	7.29765	NA	intron (NM_001202544, intron 2 of 21)	intron (NM_001202544, intron 2 of 21)	136017	NM_181552	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_57683	chr2	198811388	198811529	+	7.29765	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	142032	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C-like 1	protein-coding
19-PTNLD28-TUMOR_peak_20876	chr11	102632432	102632602	+	7.29765	NA	Intergenic	L2c|LINE|L2	18842	NM_002425	4319	Hs.2258	NM_002425	HPRD:01704	MMP10	SL-2|STMY2	matrix metallopeptidase 10 (stromelysin 2)	protein-coding
19-PTNLD28-TUMOR_peak_65868	chr22	44894355	44894462	+	7.29765	NA	promoter-TSS (NM_032287)	promoter-TSS (NM_032287)	-403	NM_032287	84247	Hs.744991	NM_032287	HPRD:13982	LDOC1L	Mar6|Mart6|dJ1033E15.2	leucine zipper, down-regulated in cancer 1-like	protein-coding
19-PTNLD28-TUMOR_peak_2885	chr1	42317420	42317530	+	7.29765	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	66903	NM_024503	59269	Hs.403972	NM_024503	HPRD:09442	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_84919	chr6	3713165	3713415	+	7.29765	NA	Intergenic	Intergenic	38956	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_65867	chr22	44893953	44894263	+	7.29765	NA	promoter-TSS (NM_032287)	promoter-TSS (NM_032287)	-103	NM_032287	84247	Hs.744991	NM_032287	HPRD:13982	LDOC1L	Mar6|Mart6|dJ1033E15.2	leucine zipper, down-regulated in cancer 1-like	protein-coding
19-PTNLD28-TUMOR_peak_10835	chr1	231521214	231521429	+	7.29765	NA	intron (NM_022051, intron 1 of 4)	L2c|LINE|L2	39469	NM_022051	54583	Hs.444450	NM_022051	HPRD:06971	EGLN1	C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia-inducible factor 1	protein-coding
19-PTNLD28-TUMOR_peak_22106	chr11	129465081	129465276	+	7.29765	NA	Intergenic	Intergenic	21986	NR_120582	101929557	Hs.385785	NR_120582		LINC01395	-	long intergenic non-protein coding RNA 1395	ncRNA
19-PTNLD28-TUMOR_peak_25792	chr12	100593351	100593661	+	7.29765	NA	promoter-TSS (NM_022496)	promoter-TSS (NM_022496)	-359	NM_022496	64431	Hs.115088	NM_022496	HPRD:12421	ACTR6	ARP6|HSPC281|MSTP136|hARP6|hARPX	ARP6 actin-related protein 6 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_24946	chr12	63545526	63545666	+	7.29765	NA	5' UTR (NM_000706, exon 1 of 2)	5' UTR (NM_000706, exon 1 of 2)	994	NM_000706	552	Hs.2131	NM_000706		AVPR1A	AVPR V1a|AVPR1|V1aR	arginine vasopressin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_67959	chr3	47005017	47005185	+	7.29765	NA	intron (NM_001277074, intron 1 of 6)	SVA_D|Other|Other	12890	NR_102269	151903	Hs.631918	NM_144716	HPRD:13007	CCDC12	-	coiled-coil domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_66487	chr3	9906307	9906395	+	7.29661	NA	Intergenic	Intergenic	14145	NM_001199623	63924	Hs.567562	NM_022094	HPRD:13060	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death-inducing DFFA-like effector c	protein-coding
19-PTNLD28-TUMOR_peak_18110	chr11	36471730	36471829	+	7.29661	NA	intron (NM_001160169, intron 6 of 6)	intron (NM_001160169, intron 6 of 6)	49232	NM_001160169	79899	Hs.19987	NM_024841	HPRD:07854	PRR5L	PROTOR2	proline rich 5 like	protein-coding
19-PTNLD28-TUMOR_peak_32833	chr15	30917618	30917756	+	7.29661	NA	Intergenic	Intergenic	-1192	NM_001039841	89839	Hs.659621	NM_001039841	ENSG00000187951	ARHGAP11B	B'-T|FAM7B1	Rho GTPase activating protein 11B	protein-coding
19-PTNLD28-TUMOR_peak_103661	chr9	71319632	71319778	+	7.29635	NA	promoter-TSS (NM_003558)	promoter-TSS (NM_003558)	-625	NM_001278253	8395	Hs.534371	NM_003558	HPRD:04121	PIP5K1B	MSS4|STM7	phosphatidylinositol-4-phosphate 5-kinase, type I, beta	protein-coding
19-PTNLD28-TUMOR_peak_59267	chr2	241638683	241638837	+	7.29635	NA	TTS (NM_198998)	TTS (NM_198998)	7498	NM_198998	375318	Hs.534650	NM_198998	HPRD:16504	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
19-PTNLD28-TUMOR_peak_95949	chr7	142196705	142196817	+	7.29635	NA	Intergenic	Intergenic	-177370	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_71423	chr3	142789849	142790234	+	7.29635	NA	Intergenic	Intergenic	-48577	NM_004267	9435	Hs.8786	NM_004267		CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_55661	chr2	130634916	130635036	+	7.29635	NA	Intergenic	Intergenic	-45774	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_39157	chr16	85244975	85245090	+	7.29635	NA	Intergenic	Intergenic	-71532	NR_038859	197196	Hs.679002	NM_153238		LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
19-PTNLD28-TUMOR_peak_59538	chr20	3154579	3154731	+	7.29635	NA	promoter-TSS (NM_001282533)	promoter-TSS (NM_001282533)	-417	NM_001282533	9762	Hs.90232	NM_014731	HPRD:11461	LZTS3	PROSAPIP1	leucine zipper, putative tumor suppressor family member 3	protein-coding
19-PTNLD28-TUMOR_peak_10728	chr1	229393847	229393937	+	7.29635	NA	Intergenic	Intergenic	-12917	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_44077	chr17	80218305	80218448	+	7.29635	NA	intron (NR_110578, intron 2 of 8)	HAL1-2a_MD|LINE|L1	13218	NM_139062	1453	Hs.631725	NM_001893	HPRD:02920	CSNK1D	ASPS|CKIdelta|FASPS2|HCKID	casein kinase 1, delta	protein-coding
19-PTNLD28-TUMOR_peak_84651	chr6	315977	316182	+	7.29635	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	24022	NM_001286555	56940	Hs.29106	NM_020185	HPRD:13255	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
19-PTNLD28-TUMOR_peak_99355	chr8	82754406	82754516	+	7.29635	NA	promoter-TSS (NM_152837)	promoter-TSS (NM_152837)	60	NM_152837	64089	Hs.492121	NM_022133	HPRD:15411	SNX16	-	sorting nexin 16	protein-coding
19-PTNLD28-TUMOR_peak_29214	chr13	114801454	114801935	+	7.29635	NA	intron (NM_007368, intron 4 of 23)	intron (NM_007368, intron 4 of 23)	96401	NM_007368	22821	Hs.593075	NM_007368	HPRD:05537	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
19-PTNLD28-TUMOR_peak_54625	chr2	103353120	103353398	+	7.29635	NA	promoter-TSS (NM_032718)	promoter-TSS (NM_032718)	78	NM_032718	84804	Hs.590898	NM_032718		MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_40784	chr17	26897968	26898106	+	7.29635	NA	intron (NM_033198, intron 2 of 11)	intron (NM_033198, intron 2 of 11)	850	NM_033198	94005	Hs.462550	NM_033198	HPRD:15135	PIGS	-	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding
19-PTNLD28-TUMOR_peak_58755	chr2	230786043	230786164	+	7.29635	NA	intron (NM_001284214, intron 1 of 41)	CpG	622	NM_001284216	9320	Hs.572642	NM_004238	HPRD:05144	TRIP12	TRIP-12|ULF	thyroid hormone receptor interactor 12	protein-coding
19-PTNLD28-TUMOR_peak_33445	chr15	45737979	45738106	+	7.29635	NA	Intergenic	Intergenic	12794	NR_030599	100126311		NR_030599	miRBase:MI0005544	MIR147B	MIRN147B	microRNA 147b	ncRNA
19-PTNLD28-TUMOR_peak_39171	chr16	85368777	85369074	+	7.29635	NA	Intergenic	Intergenic	-28994	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_83967	chr5	171961951	171962092	+	7.29422	NA	Intergenic	MER45C|DNA|hAT-Tip100	-80494	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_37015	chr16	28269906	28270065	+	7.29422	NA	Intergenic	Intergenic	-33855	NM_001024401	388228	Hs.97837	NM_001024401	HPRD:18608	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_84246	chr5	175981153	175981310	+	7.29422	NA	intron (NM_017675, intron 1 of 31)	intron (NM_017675, intron 1 of 31)	4888	NM_017675	54825	Hs.4205	NM_017675	HPRD:15103	CDHR2	PCDH24|PCLKC	cadherin-related family member 2	protein-coding
19-PTNLD28-TUMOR_peak_40647	chr17	21183441	21183551	+	7.29046	NA	Intergenic	Intergenic	-4472	NM_145109	5606	Hs.514012	NM_002756	HPRD:03816	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_89099	chr6	111259441	111259728	+	7.28742	NA	Intergenic	AluJr4|SINE|Alu	-20179	NM_138408	112495	Hs.418520	NM_138408	HPRD:12886	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC, polypeptide 6, alpha 35kDa	protein-coding
19-PTNLD28-TUMOR_peak_88576	chr6	84954994	84955100	+	7.28742	NA	Intergenic	SVA_D|Other|Other	-17694	NM_014895	22832	Hs.485865	NM_014895	HPRD:10796	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162kDa	protein-coding
19-PTNLD28-TUMOR_peak_106580	chr9	136151080	136151401	+	7.28742	NA	promoter-TSS (NM_020469)	promoter-TSS (NM_020469)	-610	NM_020469	28	Hs.654423	NM_020469		ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_1028	chr1	16175768	16176088	+	7.28742	NA	intron (NM_015001, intron 1 of 14)	CpG	-1286	NR_024279	729614	Hs.119298	NR_024279	ENSG00000179743	FLJ37453	-	uncharacterized LOC729614	ncRNA
19-PTNLD28-TUMOR_peak_110031	chrX	154235111	154235411	+	7.28742	NA	intron (NM_000132, intron 1 of 25)	intron (NM_000132, intron 1 of 25)	15737	NM_000132	2157	Hs.632836	NM_000132	HPRD:02384	F8	AHF|DXS1253E|F8B|F8C|FVIII|HEMA	coagulation factor VIII, procoagulant component	protein-coding
19-PTNLD28-TUMOR_peak_29818	chr14	34265707	34265943	+	7.28742	NA	intron (NM_001165893, intron 9 of 10)	intron (NM_001165893, intron 9 of 10)	154459	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_99653	chr8	99077077	99077165	+	7.28742	NA	intron (NM_001170806, intron 1 of 1)	CpG	371	NM_001170806	203111	Hs.171455	NM_173549	HPRD:08802	ERICH5	C8orf47	glutamate-rich 5	protein-coding
19-PTNLD28-TUMOR_peak_102621	chr9	31778093	31778255	+	7.28742	NA	Intergenic	HERVK11-int|LTR|ERVK	-606427	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_42088	chr17	46985363	46985453	+	7.28742	NA	promoter-TSS (NM_023079)	promoter-TSS (NM_023079)	-323	NM_023079	65264	Hs.514297	NM_023079	HPRD:08589	UBE2Z	USE1	ubiquitin-conjugating enzyme E2Z	protein-coding
19-PTNLD28-TUMOR_peak_103514	chr9	68291050	68291259	+	7.28742	NA	Intergenic	AluJb|SINE|Alu	163221	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_83843	chr5	169862098	169862244	+	7.28742	NA	intron (NM_001034838, intron 1 of 7)	intron (NM_001034838, intron 1 of 7)	-45490	NM_004137	3779	Hs.484099	NM_004137		KCNMB1	BKbeta1|K(VCA)beta|SLO-BETA|hbeta1|hslo-beta|k(VCA)beta-1|slo-beta-1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_61352	chr20	44399878	44400096	+	7.28742	NA	Intergenic	Intergenic	20560	NM_080614	140686	Hs.419126	NM_080614	HPRD:15676	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
19-PTNLD28-TUMOR_peak_88915	chr6	104157307	104157444	+	7.28742	NA	Intergenic	L1PA2|LINE|L1	1150419	NR_104424	57531	Hs.434340	NM_020771	HPRD:17086	HACE1	-	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_89812	chr6	144671025	144671216	+	7.28742	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	58247	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_75564	chr4	68158258	68158373	+	7.28742	NA	Intergenic	Intergenic	129403	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_69575	chr3	107135883	107135973	+	7.28742	NA	Intergenic	L1MCa|LINE|L1	-13849	NR_110039	101929607	Hs.252565	NR_110039		LOC101929607	-	uncharacterized LOC101929607	ncRNA
19-PTNLD28-TUMOR_peak_71894	chr3	156236645	156236763	+	7.28742	NA	intron (NM_172160, intron 11 of 13)	L2c|LINE|L2	36269	NM_007107	6747	Hs.518346	NM_007107	HPRD:16206	SSR3	TRAPG	signal sequence receptor, gamma (translocon-associated protein gamma)	protein-coding
19-PTNLD28-TUMOR_peak_68541	chr3	57530577	57530673	+	7.28742	NA	promoter-TSS (NM_198564)	promoter-TSS (NM_198564)	-554	NM_198564	201625	Hs.201378	NM_178504	HPRD:08281	DNAH12	DHC3|DLP12|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19	dynein, axonemal, heavy chain 12	protein-coding
19-PTNLD28-TUMOR_peak_52039	chr2	33037585	33037679	+	7.28742	NA	exon (NM_001193509, exon 18 of 20)	exon (NM_001193509, exon 18 of 20)	-12878	NR_027098	285045	Hs.434660	NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
19-PTNLD28-TUMOR_peak_25994	chr12	106135671	106135801	+	7.28742	NA	non-coding (NR_110108, exon 3 of 3)	non-coding (NR_110108, exon 3 of 3)	35184	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_4539	chr1	83600206	83600320	+	7.28742	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-148372	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_17161	chr11	11431412	11431669	+	7.28742	NA	intron (NM_198516, intron 3 of 10)	intron (NM_198516, intron 3 of 10)	-56636	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_108423	chrX	54977559	54977727	+	7.28742	NA	intron (NM_002625, intron 8 of 13)	intron (NM_002625, intron 8 of 13)	30386	NM_001271184	7216	Hs.633653	NM_016157	HPRD:02134	TRO	MAGE-d3|MAGED3	trophinin	protein-coding
19-PTNLD28-TUMOR_peak_77453	chr4	146761396	146761503	+	7.28742	NA	intron (NM_178835, intron 7 of 14)	MER91B|DNA|hAT-Tip100	98158	NM_178835	152485	Hs.633543	NM_178835	HPRD:14095	ZNF827	-	zinc finger protein 827	protein-coding
19-PTNLD28-TUMOR_peak_94961	chr7	119227173	119227359	+	7.28742	NA	Intergenic	L1PA2|LINE|L1	-686456	NM_012281	3751	Hs.654739	NM_012281	HPRD:09254	KCND2	KV4.2|RK5	potassium voltage-gated channel, Shal-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_88810	chr6	93489608	93489795	+	7.28742	NA	Intergenic	Intergenic	639599	NM_001288630	2045	Hs.73962	NM_004440	HPRD:03721	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
19-PTNLD28-TUMOR_peak_55503	chr2	124784854	124784985	+	7.28742	NA	intron (NM_130773, intron 1 of 23)	intron (NM_130773, intron 1 of 23)	2055	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_99161	chr8	71469449	71469752	+	7.28742	NA	Intergenic	Intergenic	51094	NM_014294	23471	Hs.491988	NM_014294	HPRD:05545	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_62180	chr20	54997600	54997713	+	7.28742	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	10342	NM_001164114	57091	Hs.473144	NM_020356	HPRD:09842	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffolding protein family member 4	protein-coding
19-PTNLD28-TUMOR_peak_4397	chr1	76607910	76608182	+	7.28742	NA	intron (NM_152996, intron 1 of 4)	MLT1J2|LTR|ERVL-MaLR	67657	NM_001160011	256435	Hs.337040	NM_152996		ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_15302	chr10	103698232	103698339	+	7.28742	NA	intron (NM_024541, intron 23 of 25)	intron (NM_024541, intron 23 of 25)	-94608	NM_173193	30819	Hs.97044	NM_014591	HPRD:06880	KCNIP2	KCHIP2	Kv channel interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_97905	chr8	28242793	28243089	+	7.28742	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	1036	NM_018660	55893	Hs.435535	NM_018660	HPRD:11711	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
19-PTNLD28-TUMOR_peak_38219	chr16	66412793	66413110	+	7.28742	NA	intron (NM_001795, intron 1 of 11)	LTR22A|LTR|ERVK	12426	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_9094	chr1	199653929	199654046	+	7.28742	NA	Intergenic	Intergenic	-342743	NM_003822	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_59206	chr2	240658285	240658421	+	7.28742	NA	Intergenic	Intergenic	-26201	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_71743	chr3	151046458	151046693	+	7.28742	NA	exon (NM_176894, exon 2 of 2)	exon (NM_176894, exon 2 of 2)	762	NM_176894	53829	Hs.546396	NM_023914	HPRD:16210	P2RY13	GPCR1|GPR86|GPR94|P2Y13|SP174	purinergic receptor P2Y, G-protein coupled, 13	protein-coding
19-PTNLD28-TUMOR_peak_8721	chr1	183106994	183107175	+	7.28742	NA	intron (NM_002293, intron 26 of 27)	intron (NM_002293, intron 26 of 27)	-48090	NM_005562	3918	Hs.591484	NM_005562	HPRD:01031	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_4612	chr1	85763622	85764046	+	7.28742	NA	Intergenic	Intergenic	-21247	NM_003921	8915	Hs.193516	NM_003921	HPRD:04625	BCL10	CARMEN|CIPER|CLAP|c-E10|mE10	B-cell CLL/lymphoma 10	protein-coding
19-PTNLD28-TUMOR_peak_36284	chr16	11350360	11350729	+	7.28710	NA	promoter-TSS (NM_003745)	promoter-TSS (NM_003745)	-505	NM_003745	8651	Hs.50640	NM_003745	HPRD:04669	SOCS1	CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3	suppressor of cytokine signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_60883	chr20	36153431	36153523	+	7.28598	NA	promoter-TSS (NM_001167823)	promoter-TSS (NM_001167823)	-524	NM_001167823	10904	Hs.472651	NM_006698	HPRD:16552	BLCAP	BC10	bladder cancer associated protein	protein-coding
19-PTNLD28-TUMOR_peak_36269	chr16	11040174	11040483	+	7.28325	NA	intron (NM_015226, intron 1 of 22)	intron (NM_015226, intron 1 of 22)	1983	NM_001243403	23274	Hs.35490	NM_015226	HPRD:17185	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16, member A	protein-coding
19-PTNLD28-TUMOR_peak_51079	chr2	10572115	10572211	+	7.28325	NA	Intergenic	Intergenic	14812	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
19-PTNLD28-TUMOR_peak_47010	chr19	7990228	7990357	+	7.27653	NA	exon (NM_206833, exon 2 of 2)	exon (NM_206833, exon 2 of 2)	759	NM_206833	404217	Hs.657978	NM_206833	HPRD:13097	CTXN1	CTXN	cortexin 1	protein-coding
19-PTNLD28-TUMOR_peak_6839	chr1	151967618	151967726	+	7.27631	NA	promoter-TSS (NM_002966)	promoter-TSS (NM_002966)	-958	NM_002966	6281	Hs.143873	NM_002966	HPRD:00232	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
19-PTNLD28-TUMOR_peak_4112	chr1	65532819	65533121	+	7.27630	NA	Intergenic	CpG	-8779	NR_029516	406893		NR_029516	miRBase:MI0000103	MIR101-1	MIRN101-1	microRNA 101-1	ncRNA
19-PTNLD28-TUMOR_peak_12834	chr10	32635575	32635672	+	7.27630	NA	promoter-TSS (NR_104163)	promoter-TSS (NR_104163)	353	NM_001272019	80314	Hs.167805	NM_025209	HPRD:09941	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_107086	chrUn_gl000218	66460	66551	+	7.27502	NA	intron (NR_037871, intron 2 of 4)	intron (NR_037871, intron 2 of 4)	-11456	NR_027420	389834	Hs.720653	NR_027420		LOC389834	-	ankyrin repeat domain 57 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65061	chr22	30642653	30642833	+	7.27502	NA	promoter-TSS (NM_001257135)	promoter-TSS (NM_001257135)	97	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_79640	chr5	40680163	40680280	+	7.27373	NA	5' UTR (NM_000958, exon 1 of 3)	5' UTR (NM_000958, exon 1 of 3)	189	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_106190	chr9	130485806	130486084	+	7.27373	NA	intron (NM_144965, intron 7 of 13)	intron (NM_144965, intron 7 of 13)	7587	NM_144965	158248	Hs.642748	NM_144965	HPRD:15581	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
19-PTNLD28-TUMOR_peak_86360	chr6	28918790	28918964	+	7.26819	NA	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	7316	NR_103538	729583	Hs.453549	NR_103538		C6orf100	dJ25J6.5	chromosome 6 open reading frame 100	ncRNA
19-PTNLD28-TUMOR_peak_108818	chrX	77360479	77360588	+	7.26819	NA	intron (NM_000291, intron 1 of 10)	intron (NM_000291, intron 1 of 10)	867	NM_000291	5230	Hs.78771	NM_000291	HPRD:02412	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_67213	chr3	24637439	24637527	+	7.26819	NA	Intergenic	Intergenic	-74557	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_78348	chr4	186150118	186150493	+	7.26819	NA	intron (NM_031953, intron 1 of 18)	intron (NM_031953, intron 1 of 18)	19021	NM_031953	83891	Hs.369091	NM_031953	HPRD:15414	SNX25	SBBI31	sorting nexin 25	protein-coding
19-PTNLD28-TUMOR_peak_78676	chr5	1512285	1512398	+	7.26792	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	-1370	NR_106723	102466103		NR_106723		MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
19-PTNLD28-TUMOR_peak_11840	chr10	5931214	5931370	+	7.26792	NA	promoter-TSS (NM_001258452)	promoter-TSS (NM_001258452)	-243	NM_001258452	84893	Hs.498543	NM_032807	HPRD:06243	FBXO18	FBH1|Fbx18	F-box protein, helicase, 18	protein-coding
19-PTNLD28-TUMOR_peak_51633	chr2	26100360	26100448	+	7.26792	NA	intron (NM_018263, intron 1 of 11)	intron (NM_018263, intron 1 of 11)	908	NM_018263	55252	Hs.119815	NM_018263	HPRD:10676	ASXL2	ASXH2	additional sex combs like transcriptional regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_2276	chr1	34849587	34849843	+	7.26792	NA	Intergenic	L1MCb|LINE|L1	207162	NM_001134734	84970	Hs.194610	NM_032884	HPRD:11310	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
19-PTNLD28-TUMOR_peak_16654	chr11	2399203	2399529	+	7.26792	NA	promoter-TSS (NR_108080)	promoter-TSS (NR_108080)	-144	NR_108080	101927682	Hs.675920	NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20169	chr11	76494028	76494310	+	7.26792	NA	promoter-TSS (NR_120561)	promoter-TSS (NR_120561)	-63	NR_120562	101928837	Hs.656851	NR_120561		LOC101928837	-	uncharacterized LOC101928837	ncRNA
19-PTNLD28-TUMOR_peak_27679	chr13	30914735	30914851	+	7.26792	NA	non-coding (NR_024464, exon 5 of 5)	non-coding (NR_024464, exon 5 of 5)	-33169	NM_032116	84056	Hs.243596	NM_032116	HPRD:13753	KATNAL1	-	katanin p60 subunit A-like 1	protein-coding
19-PTNLD28-TUMOR_peak_94671	chr7	105296043	105296342	+	7.26792	NA	intron (NM_138495, intron 2 of 9)	intron (NM_138495, intron 2 of 9)	23417	NM_138495	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_102838	chr9	35110493	35110668	+	7.26792	NA	intron (NM_025182, intron 1 of 8)	intron (NM_025182, intron 1 of 8)	5313	NM_025182	80256	Hs.301696	NM_025182	HPRD:13869	FAM214B	KIAA1539|P1.11659_5|bA182N22.6	family with sequence similarity 214, member B	protein-coding
19-PTNLD28-TUMOR_peak_86160	chr6	26533443	26533602	+	7.26792	NA	Intergenic	Intergenic	-5050	NM_006353	10473	Hs.236774	NM_006353		HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
19-PTNLD28-TUMOR_peak_54099	chr2	91750474	91750648	+	7.26732	NA	Intergenic	TAR1|Satellite|telo	97414	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88408	chr6	76644765	76644877	+	7.26642	NA	intron (NM_001282368, intron 13 of 15)	intron (NM_001282368, intron 13 of 15)	137574	NM_001563	3617	Hs.590893	NM_001563	HPRD:04186	IMPG1	GP147|IPM150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding
19-PTNLD28-TUMOR_peak_63756	chr21	43797005	43797100	+	7.26642	NA	intron (NR_046020, intron 10 of 12)	intron (NR_046020, intron 10 of 12)	-10408	NM_003225	7031	Hs.162807	NM_003225	HPRD:00219	TFF1	BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2	trefoil factor 1	protein-coding
19-PTNLD28-TUMOR_peak_53795	chr2	85673151	85673287	+	7.26642	NA	Intergenic	Intergenic	11301	NM_198482	284948	Hs.209542	NM_198482	HPRD:14156	SH2D6	-	SH2 domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_86850	chr6	33499924	33500071	+	7.26642	NA	Intergenic	Intergenic	48073	NM_001188	578	Hs.485139	NM_001188	HPRD:02744	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
19-PTNLD28-TUMOR_peak_19656	chr11	69213795	69214089	+	7.26642	NA	Intergenic	Intergenic	-86387	NR_120543	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_70702	chr3	129072008	129072223	+	7.26642	NA	Intergenic	Intergenic	-36995	NM_006026	8971	Hs.75307	NM_006026	HPRD:04151	H1FX	H1X	H1 histone family, member X	protein-coding
19-PTNLD28-TUMOR_peak_43989	chr17	79571302	79571511	+	7.26642	NA	intron (NM_017921, intron 8 of 16)	L1MC4|LINE|L1	32732	NM_017921	55666	Hs.464333	NM_017921	HPRD:06975	NPLOC4	NPL4	nuclear protein localization 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_65559	chr22	39603265	39603365	+	7.26642	NA	Intergenic	Intergenic	33599	NM_033016	5155	Hs.1976	NM_002608	HPRD:01815	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_100610	chr8	125575083	125575236	+	7.26642	NA	exon (NM_014751, exon 10 of 14)	exon (NM_014751, exon 10 of 14)	23816	NM_001278645	4715	Hs.15977	NM_005005	HPRD:03264	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa	protein-coding
19-PTNLD28-TUMOR_peak_21674	chr11	121163608	121163743	+	7.26642	NA	promoter-TSS (NM_001024956)	promoter-TSS (NM_001024956)	98	NM_001024956	6309	Hs.287749	NM_006918		SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
19-PTNLD28-TUMOR_peak_42160	chr17	47908121	47908222	+	7.26642	NA	Intergenic	Intergenic	-15101	NM_001242791	729220	Hs.434138	NM_001242791		FLJ45513	-	uncharacterized LOC729220	protein-coding
19-PTNLD28-TUMOR_peak_36251	chr16	10759030	10759216	+	7.26642	NA	intron (NM_144674, intron 5 of 6)	intron (NM_144674, intron 5 of 6)	29679	NM_144674	146279	Hs.143519	NM_144674	HPRD:08736	TEKT5	CT149	tektin 5	protein-coding
19-PTNLD28-TUMOR_peak_82386	chr5	136473100	136473249	+	7.26642	NA	intron (NM_004598, intron 4 of 10)	intron (NM_004598, intron 4 of 10)	361844	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_70676	chr3	128838581	128838781	+	7.26642	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	1966	NM_198490	339122	Hs.381132	NM_198490	HPRD:17947	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_8382	chr1	176660889	176661075	+	7.26642	NA	TTS (NM_021936)	TTS (NM_021936)	228675	NM_021936	60676	Hs.187284	NM_020318	HPRD:10156	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3	pappalysin 2	protein-coding
19-PTNLD28-TUMOR_peak_39780	chr17	4108163	4108339	+	7.26642	NA	intron (NM_001257999, intron 7 of 24)	intron (NM_001257999, intron 7 of 24)	58891	NM_001257999	51479	Hs.696087	NM_016376	HPRD:09717	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_41532	chr17	40610644	40610942	+	7.26502	NA	promoter-TSS (NM_001130020)	promoter-TSS (NM_001130020)	-69	NM_001130021	535	Hs.463074	NM_005177	HPRD:01886	ATP6V0A1	ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1	ATPase, H+ transporting, lysosomal V0 subunit a1	protein-coding
19-PTNLD28-TUMOR_peak_41008	chr17	31560959	31561072	+	7.26502	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	58991	NM_183377	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_7342	chr1	156647955	156648047	+	7.26502	NA	promoter-TSS (NM_006617)	promoter-TSS (NM_006617)	-812	NM_006617	10763	Hs.527971	NM_006617	HPRD:09020	NES	-	nestin	protein-coding
19-PTNLD28-TUMOR_peak_57956	chr2	205190321	205190437	+	7.26502	NA	Intergenic	Intergenic	-220137	NM_152526	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_45921	chr18	55853728	55853824	+	7.26502	NA	intron (NM_001243960, intron 2 of 28)	intron (NM_001243960, intron 2 of 28)	-8846	NM_001144970	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_47900	chr19	17488251	17488452	+	7.26502	NA	promoter-TSS (NM_031310)	promoter-TSS (NM_031310)	-214	NM_031310	83483	Hs.107125	NM_031310	HPRD:09626	PLVAP	FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
19-PTNLD28-TUMOR_peak_37502	chr16	33716107	33716233	+	7.26502	NA	Intergenic	Intergenic	-152927	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76P	RNU6-76	RNA, U6 small nuclear 76, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_108563	chrX	64888282	64888665	+	7.26502	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	962	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_104750	chr9	97758781	97758914	+	7.26419	NA	intron (NM_032823, intron 9 of 14)	intron (NM_032823, intron 9 of 14)	-68785	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_73608	chr3	196695472	196695857	+	7.26419	NA	promoter-TSS (NM_025163)	promoter-TSS (NM_025163)	78	NM_025163	80235	Hs.518403	NM_025163	HPRD:18076	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding
19-PTNLD28-TUMOR_peak_100995	chr8	131570733	131570892	+	7.26267	NA	Intergenic	Intergenic	-114906	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_23971	chr12	47055128	47055392	+	7.26267	NA	Intergenic	Intergenic	164520	NM_001143824	55089	Hs.446077	NM_018018	HPRD:12159	SLC38A4	ATA3|NAT3|PAAT	solute carrier family 38, member 4	protein-coding
19-PTNLD28-TUMOR_peak_32190	chr14	103618008	103618243	+	7.26267	NA	Intergenic	L1MC|LINE|L1	25461	NM_006291	7127	Hs.525607	NM_006291	HPRD:04487	TNFAIP2	B94|EXOC3L3	tumor necrosis factor, alpha-induced protein 2	protein-coding
19-PTNLD28-TUMOR_peak_83995	chr5	172192851	172192939	+	7.25526	NA	Intergenic	Intergenic	5308	NM_004417	1843	Hs.171695	NM_004417	HPRD:02835	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_101853	chr9	28819	29215	+	7.25526	NA	intron (NM_182905, intron 1 of 10)	CpG	722	NM_182905	100287171	Hs.446466	NM_182905		WASH1	FAM39E|WASH	WAS protein family homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_64482	chr22	21058641	21058806	+	7.25360	NA	non-coding (NR_026815, exon 8 of 8)	non-coding (NR_026815, exon 8 of 8)	3321	NR_026815	84222	Hs.546454	NM_032262	HPRD:13197	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_18286	chr11	44958111	44958227	+	7.25356	NA	intron (NM_001258321, intron 6 of 7)	intron (NM_001258321, intron 6 of 7)	13590	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_87638	chr6	43969170	43969329	+	7.24986	NA	intron (NM_001171992, intron 2 of 3)	intron (NM_001171992, intron 2 of 3)	912	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_7549	chr1	159894053	159894151	+	7.24984	NA	promoter-TSS (NM_001277224)	promoter-TSS (NM_001277224)	239	NM_001277223	8407	Hs.517168	NM_003564	HPRD:06864	TAGLN2	HA1756	transgelin 2	protein-coding
19-PTNLD28-TUMOR_peak_30553	chr14	58893534	58893652	+	7.24271	NA	promoter-TSS (NM_001244189)	promoter-TSS (NM_001244189)	-510	NM_001244189	9786	Hs.232532	NM_014749	HPRD:11092	KIAA0586	Talpid3	KIAA0586	protein-coding
19-PTNLD28-TUMOR_peak_35502	chr15	101261402	101261583	+	7.24048	NA	Intergenic	L2|LINE|L2	118737	NM_198243	140460	Hs.31845	NM_024708	HPRD:10674	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
19-PTNLD28-TUMOR_peak_7657	chr1	161146535	161146772	+	7.24042	NA	intron (NM_003779, intron 1 of 7)	intron (NM_003779, intron 1 of 7)	1105	NM_001199874	8703	Hs.321231	NM_003779	HPRD:04929	B4GALT3	beta4Gal-T3	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_38536	chr16	70285025	70285430	+	7.24042	NA	exon (NM_058219, exon 1 of 1)	exon (NM_058219, exon 1 of 1)	606	NM_058219	118460	Hs.660633	NM_058219	HPRD:12107	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
19-PTNLD28-TUMOR_peak_41667	chr17	41923714	41923819	+	7.24042	NA	promoter-TSS (NM_001168323)	promoter-TSS (NM_001168323)	-750	NM_001168324	146894	Hs.147313	NM_145273	HPRD:18222	CD300LG	CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4	CD300 molecule-like family member g	protein-coding
19-PTNLD28-TUMOR_peak_38627	chr16	71757824	71758227	+	7.24042	NA	intron (NM_015020, intron 1 of 18)	CpG	579	NM_015020	23035	Hs.709458	NM_015020	HPRD:11118	PHLPP2	PHLPPL	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_48011	chr19	18220716	18220812	+	7.24042	NA	intron (NM_015016, intron 2 of 26)	CpG	-11138	NM_001290024	3594	Hs.567294	NM_005535	HPRD:03363	IL12RB1	CD212|IL-12R-BETA1|IL12RB	interleukin 12 receptor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_64132	chr21	47897795	47897965	+	7.24004	NA	intron (NM_001146114, intron 1 of 27)	L1ME3C|LINE|L1	15496	NR_046400	100862692	Hs.737163	NR_046400		DIP2A-IT1	-	DIP2A intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_104513	chr9	92976257	92976398	+	7.24004	NA	Intergenic	Intergenic	-172546	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	ncRNA
19-PTNLD28-TUMOR_peak_55980	chr2	137755246	137755385	+	7.24004	NA	intron (NM_001080427, intron 1 of 26)	intron (NM_001080427, intron 1 of 26)	6853	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_110386	chrY	59080330	59080474	+	7.24004	NA	Intergenic	Intergenic	-20055	NM_005840	10251	Hs.381912	NM_005840	HPRD:03917	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_64612	chr22	22522565	22522838	+	7.24004	NA	Intergenic	Intergenic	-76499	NM_007128	7441	Hs.247979	NM_007128	HPRD:05505	VPREB1	IGI|IGVPB|VPREB	pre-B lymphocyte 1	protein-coding
19-PTNLD28-TUMOR_peak_55572	chr2	128431917	128432144	+	7.24004	NA	intron (NM_001136037, intron 1 of 10)	intron (NM_001136037, intron 1 of 10)	734	NM_001161403	55679	Hs.469881	NM_017980	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_94688	chr7	105479167	105479410	+	7.24004	NA	intron (NM_152749, intron 2 of 3)	intron (NM_152749, intron 2 of 3)	37743	NM_020725	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_104926	chr9	101096226	101096415	+	7.24004	NA	intron (NM_005458, intron 13 of 18)	MIR|SINE|MIR	-78317	NM_001267571	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_92493	chr7	48678696	48678819	+	7.24004	NA	intron (NM_152701, intron 59 of 61)	intron (NM_152701, intron 59 of 61)	-285400	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_99925	chr8	104320723	104320840	+	7.24004	NA	intron (NM_001164616, intron 3 of 7)	ERVL-E-int|LTR|ERVL	9722	NM_003506	8323	Hs.591863	NM_003506	HPRD:04559	FZD6	FZ-6|FZ6|HFZ6|NDNC10	frizzled class receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_16311	chr10	134043348	134043536	+	7.24004	NA	intron (NM_173575, intron 2 of 11)	intron (NM_173575, intron 2 of 11)	43028	NM_006426	10570	Hs.100058	NM_006426	HPRD:07463	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_100615	chr8	125672786	125673187	+	7.24004	NA	intron (NM_001282974, intron 3 of 13)	intron (NM_001282974, intron 3 of 13)	67762	NM_001282971	9788	Hs.336994	NM_014751	HPRD:12243	MTSS1	MIM|MIMA|MIMB	metastasis suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_64068	chr21	47012403	47012496	+	7.24004	NA	Intergenic	Intergenic	-50064	NM_194255	6573	Hs.84190	NM_003056	HPRD:02691	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_27743	chr13	32420960	32421149	+	7.24004	NA	non-coding (NR_027062, exon 1 of 4)	non-coding (NR_027062, exon 1 of 4)	134	NR_027062	196549	Hs.507667	NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_63134	chr21	32819927	32820056	+	7.24004	NA	intron (NM_003253, intron 2 of 28)	intron (NM_003253, intron 2 of 28)	111299	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_25121	chr12	67987264	67987354	+	7.24004	NA	Intergenic	Intergenic	-55203	NM_006482	8445	Hs.173135	NM_003583		DYRK2	-	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_83329	chr5	152527568	152527695	+	7.24004	NA	Intergenic	L1PA16|LINE|L1	-175722	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19-PTNLD28-TUMOR_peak_42949	chr17	63180083	63180193	+	7.24004	NA	intron (NM_003835, intron 9 of 18)	intron (NM_003835, intron 9 of 18)	46682	NM_001081955	8787	Hs.664380	NM_003835	HPRD:04962	RGS9	PERRS|RGS9L	regulator of G-protein signaling 9	protein-coding
19-PTNLD28-TUMOR_peak_106605	chr9	136608275	136608383	+	7.24004	NA	Intergenic	Intergenic	-3252	NM_007101	1757	Hs.198003	NM_007101	HPRD:06831	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_73566	chr3	196029898	196030056	+	7.24004	NA	intron (NM_152773, intron 3 of 4)	LTR8|LTR|ERV1	15188	NM_152773	255758	Hs.733180	NM_152773	HPRD:14554	TCTEX1D2	-	Tctex1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_69009	chr3	72304445	72304643	+	7.24004	NA	Intergenic	Intergenic	104136	NR_038221	201617	Hs.382623	NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
19-PTNLD28-TUMOR_peak_31178	chr14	72448754	72449002	+	7.24004	NA	intron (NM_001204420, intron 2 of 15)	L1PA3|LINE|L1	49092	NM_001204418	9628	Hs.509872	NM_004296	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
19-PTNLD28-TUMOR_peak_27979	chr13	41837430	41837533	+	7.24004	NA	intron (NM_004294, intron 1 of 9)	intron (NM_004294, intron 1 of 9)	232	NM_004294	9617	Hs.382176	NM_004294	HPRD:06855	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translational release factor 1	protein-coding
19-PTNLD28-TUMOR_peak_33927	chr15	63640652	63640869	+	7.24004	NA	intron (NM_206925, intron 2 of 9)	intron (NM_206925, intron 2 of 9)	33549	NM_001218	771	Hs.210995	NM_001218		CA12	CAXII|HsT18816	carbonic anhydrase XII	protein-coding
19-PTNLD28-TUMOR_peak_2084	chr1	32297459	32297572	+	7.24004	NA	Intergenic	MIRb|SINE|MIR	-15863	NM_144569	90853	Hs.62604	NM_144569	HPRD:08057	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_13924	chr10	65801049	65801377	+	7.24004	NA	Intergenic	Intergenic	520090	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_83787	chr5	168699860	168700059	+	7.24004	NA	intron (NM_003062, intron 1 of 35)	intron (NM_003062, intron 1 of 35)	-9261	NR_030311	693170		NR_030311		MIR585	MIRN585|hsa-mir-585	microRNA 585	ncRNA
19-PTNLD28-TUMOR_peak_110057	chrX	154977324	154977468	+	7.24004	NA	Intergenic	Intergenic	-20055	NM_005840	10251	Hs.381912	NM_005840	HPRD:03917	SPRY3	HSPRY3|spry-3	sprouty homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_13537	chr10	50314652	50314947	+	7.24004	NA	intron (NM_144984, intron 2 of 2)	MER67A|LTR|ERV1	8778	NM_144984	196740	Hs.522928	NM_144984	HPRD:08503	VSTM4	C10orf72	V-set and transmembrane domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_80034	chr5	56834069	56834284	+	7.24004	NA	Intergenic	Intergenic	-31993	NR_120607	100996645	Hs.582496	NR_120607	ENSG00000249436	LINCR-0003	-	uncharacterized LincR-0003	ncRNA
19-PTNLD28-TUMOR_peak_27908	chr13	40373479	40373626	+	7.24004	NA	Intergenic	L1PA4|LINE|L1	-135280	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_38215	chr16	66393730	66393971	+	7.24004	NA	Intergenic	Intergenic	-6675	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_34241	chr15	70027605	70027770	+	7.24004	NA	Intergenic	Intergenic	-99886	NR_026764	414926	Hs.569502	NR_026764	ENSG00000259703	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
19-PTNLD28-TUMOR_peak_4113	chr1	65533494	65533766	+	7.23636	NA	Intergenic	CpG	-9439	NR_029516	406893		NR_029516	miRBase:MI0000103	MIR101-1	MIRN101-1	microRNA 101-1	ncRNA
19-PTNLD28-TUMOR_peak_23667	chr12	32260608	32261074	+	7.23636	NA	intron (NM_001003398, intron 1 of 8)	intron (NM_001003398, intron 1 of 8)	656	NM_001714	636	Hs.505202	NM_001714	HPRD:03730	BICD1	BICD	bicaudal D homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_61809	chr20	49011783	49011924	+	7.23370	NA	Intergenic	Intergenic	-73974	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_97441	chr8	19797144	19797389	+	7.23370	NA	intron (NM_000237, intron 1 of 9)	CpG	684	NM_000237	4023	Hs.180878	NM_000237	HPRD:01999	LPL	HDLCQ11|LIPD	lipoprotein lipase	protein-coding
19-PTNLD28-TUMOR_peak_34274	chr15	70477929	70478037	+	7.23370	NA	Intergenic	Intergenic	-87727	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_18820	chr11	60775522	60776083	+	7.23370	NA	intron (NM_001254750, intron 3 of 10)	CpG	36689	NM_001254750	923	Hs.744366	NM_006725	HPRD:01724	CD6	TP120	CD6 molecule	protein-coding
19-PTNLD28-TUMOR_peak_54849	chr2	110809865	110809958	+	7.23319	NA	Intergenic	Intergenic	17708	NR_036225	100422994		NR_036225	miRBase:MI0015871	MIR4267	-	microRNA 4267	ncRNA
19-PTNLD28-TUMOR_peak_26483	chr12	116972294	116972683	+	7.23209	NA	non-coding (NR_027345, exon 2 of 2)	non-coding (NR_027345, exon 2 of 2)	1248	NR_027346	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
19-PTNLD28-TUMOR_peak_14228	chr10	73487598	73488040	+	7.23209	NA	intron (NM_001171930, intron 29 of 30)	intron (NM_001171930, intron 29 of 30)	-8241	NM_001164375	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_62008	chr20	51698405	51698632	+	7.23209	NA	intron (NM_173485, intron 1 of 2)	MIR|SINE|MIR	-103304	NM_001193421	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_32176	chr14	103575360	103575481	+	7.23209	NA	intron (NM_001077594, intron 10 of 10)	intron (NM_001077594, intron 10 of 10)	8939	NM_001077594	91828	Hs.37712	NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3-like 4	protein-coding
19-PTNLD28-TUMOR_peak_91242	chr7	7363029	7363181	+	7.23209	NA	Intergenic	L2b|LINE|L2	68320	NR_108073	101927354	Hs.520664	NR_108073		LOC101927354	-	uncharacterized LOC101927354	ncRNA
19-PTNLD28-TUMOR_peak_94112	chr7	97601131	97601321	+	7.23083	NA	intron (NR_002822, intron 1 of 3)	intron (NR_002822, intron 1 of 3)	412	NR_002822	389538	Hs.655977	NR_002822		MGC72080	-	MGC72080 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46254	chr18	72168718	72168981	+	7.23083	NA	intron (NM_001168499, intron 2 of 8)	intron (NM_001168499, intron 2 of 8)	2026	NM_001168499	55748	Hs.149185	NM_018235	HPRD:09893	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding
19-PTNLD28-TUMOR_peak_23942	chr12	46662447	46662588	+	7.23083	NA	promoter-TSS (NM_001278390)	promoter-TSS (NM_001278390)	691	NM_001278387	81539	Hs.533770	NM_030674	HPRD:12245	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38, member 1	protein-coding
19-PTNLD28-TUMOR_peak_87759	chr6	45696581	45696710	+	7.22725	NA	Intergenic	Intergenic	208689	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_2442	chr1	36817076	36817284	+	7.22725	NA	intron (NM_001282546, intron 6 of 10)	intron (NM_001282546, intron 6 of 10)	-27425	NM_018166	55194	Hs.87016	NM_018166	HPRD:07690	EVA1B	C1orf78|FAM176B	eva-1 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_37706	chr16	49562168	49562310	+	7.22725	NA	intron (NM_015069, intron 5 of 7)	intron (NM_015069, intron 5 of 7)	154431	NM_144602	123970	Hs.125875	NM_144602	HPRD:14560	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_8170	chr1	171664291	171664395	+	7.22725	NA	Intergenic	L1PA3|LINE|L1	-42570	NM_000261	4653	Hs.436037	NM_000261	HPRD:03387	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin	myocilin, trabecular meshwork inducible glucocorticoid response	protein-coding
19-PTNLD28-TUMOR_peak_78482	chr4	189973347	189973483	+	7.22725	NA	Intergenic	Intergenic	596683	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_103284	chr9	44467827	44467922	+	7.22725	NA	Intergenic	LTR8|LTR|ERV1	83289	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_63824	chr21	44559179	44559383	+	7.22725	NA	Intergenic	Intergenic	-29837	NM_000394	1409	Hs.184085	NM_000394	HPRD:00427	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
19-PTNLD28-TUMOR_peak_42129	chr17	47528168	47528300	+	7.22725	NA	Intergenic	Intergenic	10877	NR_110805	101927207	Hs.638402	NR_110805	ENSG00000249497	LOC101927207	-	uncharacterized LOC101927207	ncRNA
19-PTNLD28-TUMOR_peak_90728	chr7	331787	332008	+	7.22725	NA	TTS (NM_001195127)	TTS (NM_001195127)	1761	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
19-PTNLD28-TUMOR_peak_106970	chr9_gl000200_random	15999	16094	+	7.22725	NA	NA	LTR8|LTR|ERV1	NA	NA								
19-PTNLD28-TUMOR_peak_109327	chrX	119443389	119443644	+	7.22725	NA	intron (NM_017938, intron 1 of 9)	intron (NM_017938, intron 1 of 9)	1875	NM_001104545	55026	Hs.437563	NM_017938	HPRD:06535	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
19-PTNLD28-TUMOR_peak_108613	chrX	68114942	68115070	+	7.22725	NA	Intergenic	Intergenic	66166	NM_004429	1947	Hs.144700	NM_004429	HPRD:02072	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin-B1	protein-coding
19-PTNLD28-TUMOR_peak_109267	chrX	117629463	117629867	+	7.22725	NA	promoter-TSS (NM_144658)	promoter-TSS (NM_144658)	-207	NM_144658	139818	Hs.368203	NM_144658	HPRD:06492	DOCK11	ACG|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
19-PTNLD28-TUMOR_peak_2257	chr1	34452115	34452251	+	7.22630	NA	intron (NM_052896, intron 3 of 69)	intron (NM_052896, intron 3 of 69)	117626	NR_038372	402779	Hs.666207	NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_85970	chr6	24581398	24581554	+	7.22630	NA	intron (NM_001168376, intron 5 of 19)	intron (NM_001168376, intron 5 of 19)	1979	NM_001252328	9856	Hs.26441	NM_014809	HPRD:18713	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
19-PTNLD28-TUMOR_peak_52786	chr2	53995311	53995457	+	7.22630	NA	intron (NM_001008708, intron 1 of 2)	intron (NM_001008708, intron 1 of 2)	455	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_49631	chr19	48210651	48210842	+	7.22630	NA	Intergenic	L2a|LINE|L2	-5855	NM_014601	30846	Hs.744963	NM_014601	HPRD:10434	EHD2	PAST2	EH-domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_621	chr1	9615564	9615666	+	7.22630	NA	intron (NM_032315, intron 2 of 6)	intron (NM_032315, intron 2 of 6)	16087	NM_032315	84275	Hs.568613	NM_032315		SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 (pyrimidine nucleotide carrier), member 33	protein-coding
19-PTNLD28-TUMOR_peak_36271	chr16	11047941	11048034	+	7.22630	NA	intron (NM_015226, intron 1 of 22)	L1M5|LINE|L1	9642	NM_001243403	23274	Hs.35490	NM_015226	HPRD:17185	CLEC16A	Gop-1|KIAA0350	C-type lectin domain family 16, member A	protein-coding
19-PTNLD28-TUMOR_peak_41570	chr17	40926252	40926525	+	7.22630	NA	intron (NM_032353, intron 2 of 5)	AluJb|SINE|Alu	934	NM_032353	84313	Hs.500165	NM_032353	HPRD:14396	VPS25	DERP9|EAP20|FAP20	vacuolar protein sorting 25 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_14604	chr10	81967350	81967515	+	7.22499	NA	promoter-TSS (NR_038464)	promoter-TSS (NR_038464)	-34	NR_038464	439990	Hs.365566	NR_038464	ENSG00000237523	LINC00857	-	long intergenic non-protein coding RNA 857	ncRNA
19-PTNLD28-TUMOR_peak_6666	chr1	150206801	150207112	+	7.22035	NA	promoter-TSS (NM_001136479)	promoter-TSS (NM_001136479)	70	NM_001136479	81611	Hs.656466	NM_030920	HPRD:16493	ANP32E	LANP-L|LANPL	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding
19-PTNLD28-TUMOR_peak_49913	chr19	50602375	50602464	+	7.21827	NA	Intergenic	L1MC4|LINE|L1	-1216	NR_024242	100191063	Hs.723094	NR_024242		SNAR-A14	-	small ILF3/NF90-associated RNA A14	snRNA
19-PTNLD28-TUMOR_peak_55387	chr2	121454891	121455290	+	7.21755	NA	Intergenic	L1MB3|LINE|L1	-99777	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_36248	chr16	10746127	10746281	+	7.21755	NA	intron (NM_144674, intron 5 of 6)	intron (NM_144674, intron 5 of 6)	42598	NM_144674	146279	Hs.143519	NM_144674	HPRD:08736	TEKT5	CT149	tektin 5	protein-coding
19-PTNLD28-TUMOR_peak_13224	chr10	43916365	43916513	+	7.21755	NA	Intergenic	Intergenic	-11743	NM_001098204	3185	Hs.808	NM_004966	HPRD:03023	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
19-PTNLD28-TUMOR_peak_106623	chr9	136933380	136933506	+	7.21755	NA	promoter-TSS (NM_007371)	promoter-TSS (NM_007371)	-302	NM_007371	8019	Hs.522472	NM_007371	HPRD:03327	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_91103	chr7	5613997	5614170	+	7.21755	NA	Intergenic	Intergenic	-18353	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16649	chr11	2336146	2336357	+	7.21746	NA	intron (NM_139022, intron 6 of 9)	intron (NM_139022, intron 6 of 9)	13008	NM_139022	10077	Hs.271954	NM_005705	HPRD:04834	TSPAN32	ART1|PHEMX|PHMX|TSSC6	tetraspanin 32	protein-coding
19-PTNLD28-TUMOR_peak_18515	chr11	48071596	48071688	+	7.21746	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	69532	NM_002843	5795	Hs.318547	NM_002843	HPRD:02955	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type, J	protein-coding
19-PTNLD28-TUMOR_peak_97911	chr8	28260165	28260352	+	7.21651	NA	Intergenic	Intergenic	-16281	NM_018660	55893	Hs.435535	NM_018660	HPRD:11711	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
19-PTNLD28-TUMOR_peak_106374	chr9	132372822	132372977	+	7.21651	NA	intron (NM_001286796, intron 1 of 3)	CpG	1736	NM_001286796	28989	Hs.744027	NM_014064	HPRD:10628	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_7441	chr1	157963382	157963624	+	7.21573	NA	exon (NM_018240, exon 1 of 15)	exon (NM_018240, exon 1 of 15)	440	NM_018240	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_38139	chr16	58663401	58663563	+	7.21573	NA	intron (NR_049763, intron 1 of 49)	CpG	308	NM_206999	23019	Hs.460923	NM_016284	HPRD:11999	CNOT1	CDC39|NOT1|NOT1H	CCR4-NOT transcription complex, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_70635	chr3	128342911	128343003	+	7.21573	NA	intron (NM_002950, intron 8 of 9)	MER8|DNA|TcMar-Tigger	26762	NM_002950	6184	Hs.518244	NM_002950	HPRD:01598	RPN1	OST1|RBPH1	ribophorin I	protein-coding
19-PTNLD28-TUMOR_peak_93807	chr7	87255468	87255573	+	7.21573	NA	intron (NM_000927, intron 1 of 28)	(TA)n|Simple_repeat|Simple_repeat	-2209	NM_001134405	154661	Hs.411488	NM_138290	HPRD:15274	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_42520	chr17	55969981	55970139	+	7.21212	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	10690	NM_001292025	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64537	chr22	21633542	21633788	+	7.21207	NA	Intergenic	Intergenic	-3049	NR_024583	29797	Hs.396963	NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_82589	chr5	139422891	139423074	+	7.21207	NA	promoter-TSS (NM_013981)	promoter-TSS (NM_013981)	-98	NM_013983	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_73788	chr4	1004090	1004222	+	7.21144	NA	Intergenic	CpG	-1454	NM_001004356	53834	Hs.193326	NM_021923	HPRD:16163	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_63158	chr21	33245079	33245325	+	7.21063	NA	promoter-TSS (NM_014586)	promoter-TSS (NM_014586)	-426	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_80396	chr5	67635678	67635851	+	7.21063	NA	Intergenic	MIR|SINE|MIR	47368	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_84404	chr5	177759175	177759343	+	7.21063	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	-99436	NR_103509	85007	Hs.248746	NM_153373	HPRD:18482	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_85272	chr6	10414159	10414521	+	7.20796	NA	intron (NR_033910, intron 1 of 2)	CpG	1130	NM_003220	7020	Hs.519880	NM_003220	HPRD:00128	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	protein-coding
19-PTNLD28-TUMOR_peak_68624	chr3	58613174	58613439	+	7.20248	NA	promoter-TSS (NM_001282714)	promoter-TSS (NM_001282714)	31	NM_001282714	11170	Hs.506357	NM_007177	HPRD:09753	FAM107A	DRR1|TU3A	family with sequence similarity 107, member A	protein-coding
19-PTNLD28-TUMOR_peak_79709	chr5	43018838	43018928	+	7.20248	NA	promoter-TSS (NR_034086)	promoter-TSS (NR_034086)	30	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
19-PTNLD28-TUMOR_peak_9456	chr1	203575346	203575444	+	7.20248	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-20520	NM_001001396	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_62566	chr20	61863800	61863939	+	7.20248	NA	Intergenic	Intergenic	-3366	NM_022161	79444	Hs.256126	NM_022161	HPRD:05761	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
19-PTNLD28-TUMOR_peak_1596	chr1	25593446	25593561	+	7.20248	NA	Intergenic	CpG	-5474	NM_001282871	6007	Hs.449968	NM_016124	HPRD:00199	RHD	CD240D|DIIIc|RH|RH30|RHCED|RHDVA(TT)|RHDel|RHPII|RHXIII|Rh4|RhDCw|RhII|RhK562-II|RhPI	Rh blood group, D antigen	protein-coding
19-PTNLD28-TUMOR_peak_31237	chr14	74180555	74180756	+	7.20248	NA	5' UTR (NM_006029, exon 1 of 1)	5' UTR (NM_006029, exon 1 of 1)	473	NM_006029	9240	Hs.194709	NM_006029	HPRD:04926	PNMA1	MA1	paraneoplastic Ma antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_6190	chr1	144340119	144340207	+	7.20206	NA	intron (NR_111953, intron 2 of 3)	CpG	596	NR_109754	728855	Hs.456578	NR_024510	ENSG00000235398	LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA
19-PTNLD28-TUMOR_peak_72768	chr3	184052325	184052429	+	7.19802	NA	intron (NM_001291157, intron 32 of 32)	intron (NM_001291157, intron 32 of 32)	-1340	NM_001171093	131408	Hs.591307	NM_144635	HPRD:14481	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131, member A	protein-coding
19-PTNLD28-TUMOR_peak_81139	chr5	90680856	90680950	+	7.19777	NA	intron (NR_027435, intron 1 of 2)	intron (NR_027435, intron 1 of 2)	-1754	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_70668	chr3	128745561	128745663	+	7.19632	NA	intron (NM_024768, intron 2 of 7)	L3|LINE|CR1	25140	NM_024768	79825	Hs.134807	NM_024768	HPRD:08569	EFCC1	C3orf73|CCDC48	EF-hand and coiled-coil domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64146	chr22	16055997	16056087	+	7.19632	NA	Intergenic	Intergenic	-106024	NR_073460	101101776	Hs.617315	NR_073460		BMS1P17	LINC00516	BMS1 pseudogene 17	pseudo
19-PTNLD28-TUMOR_peak_42202	chr17	48190255	48190529	+	7.19395	NA	exon (NM_174920, exon 11 of 11)	exon (NM_174920, exon 11 of 11)	16854	NM_174920	201191	Hs.567769	NM_174920	HPRD:14127	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_13460	chr10	48691551	48691696	+	7.19395	NA	Intergenic	Intergenic	115362	NM_001042357	26095	Hs.440733	NM_015605	HPRD:10898	PTPN20B	CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20	protein tyrosine phosphatase, non-receptor type 20B	protein-coding
19-PTNLD28-TUMOR_peak_109921	chrX	153199348	153199446	+	7.19395	NA	exon (NM_001256119, exon 3 of 7)	exon (NM_001256119, exon 3 of 7)	1210	NM_001256120	8260	Hs.433291	NM_003491		NAA10	ARD1|ARD1A|ARD1P|DXS707|MCOPS1|NATD|TE2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_11424	chr1	244997718	244997888	+	7.19371	NA	promoter-TSS (NM_198076)	promoter-TSS (NM_198076)	-836	NM_198076	116228	Hs.411490	NM_198076	HPRD:13307	COX20	FAM36A	COX20 cytochrome C oxidase assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_49438	chr19	46272644	46272929	+	7.19371	NA	promoter-TSS (NM_175875)	promoter-TSS (NM_175875)	-289	NM_175875	147912	Hs.43314	NM_175875	HPRD:09024	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
19-PTNLD28-TUMOR_peak_38337	chr16	67425983	67426092	+	7.19338	NA	intron (NM_015964, intron 1 of 3)	intron (NM_015964, intron 1 of 3)	1401	NM_015964	51673	Hs.534458	NM_015964	HPRD:16710	TPPP3	TPPP/p20|p20|p25gamma	tubulin polymerization-promoting protein family member 3	protein-coding
19-PTNLD28-TUMOR_peak_1729	chr1	27324251	27324422	+	7.19338	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	4141	NM_001013642	388610	Hs.355747	NM_001013642	HPRD:18384	TRNP1	C1orf225|TNRP	TMF1-regulated nuclear protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50454	chr19	56728630	56728956	+	7.19331	NA	Intergenic	CpG	10866	NM_024303	79149	Hs.177688	NM_024303	HPRD:15900	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
19-PTNLD28-TUMOR_peak_108747	chrX	72782863	72782968	+	7.19331	NA	promoter-TSS (NR_029423)	promoter-TSS (NR_029423)	6	NR_029423	139201	Hs.586477	NR_029423	ENSG00000269904	MAP2K4P1	-	mitogen-activated protein kinase kinase 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_8370	chr1	176230662	176231135	+	7.19331	NA	Intergenic	L1PA2|LINE|L1	-54518	NM_022457	64326	Hs.523744	NM_022457	HPRD:07455	RFWD2	COP1|RNF200	ring finger and WD repeat domain 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_82600	chr5	139561986	139562156	+	7.19331	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	7418	NM_032412	84418	Hs.529798	NM_032412		CYSTM1	C5orf32	cysteine-rich transmembrane module containing 1	protein-coding
19-PTNLD28-TUMOR_peak_57305	chr2	182819106	182819279	+	7.19331	NA	non-coding (NR_048567, exon 1 of 5)	non-coding (NR_048567, exon 1 of 5)	224	NR_048567	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding
19-PTNLD28-TUMOR_peak_3413	chr1	49628826	49628944	+	7.19331	NA	intron (NM_032785, intron 4 of 13)	L2c|LINE|L2	308872	NR_046839	100874313	Hs.551277	NR_046839		AGBL4-IT1	-	AGBL4 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_67668	chr3	40732356	40732472	+	7.19331	NA	Intergenic	Intergenic	166045	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_33858	chr15	62359100	62359191	+	7.19331	NA	promoter-TSS (NM_207322)	promoter-TSS (NM_207322)	-31	NM_207322	145741	Hs.202656	NM_207322	HPRD:14830	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_76055	chr4	84503481	84503881	+	7.19331	NA	intron (NM_001256421, intron 4 of 12)	intron (NM_001256421, intron 4 of 12)	46211	NM_032717	84803	Hs.99196	NM_032717	HPRD:14417	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
19-PTNLD28-TUMOR_peak_17355	chr11	14116187	14116384	+	7.19331	NA	intron (NM_006108, intron 5 of 15)	intron (NM_006108, intron 5 of 15)	132101	NM_006108	10418	Hs.643864	NM_006108		SPON1	VSGP/F-spondin|f-spondin	spondin 1, extracellular matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_36225	chr16	10364144	10364260	+	7.19331	NA	Intergenic	Intergenic	-87591	NM_000833	2903	Hs.411472	NM_000833	HPRD:00698	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	protein-coding
19-PTNLD28-TUMOR_peak_68835	chr3	66090262	66090645	+	7.19331	NA	Intergenic	L1MC4a|LINE|L1	-28832	NM_173471	115286	Hs.379386	NM_173471	HPRD:15357	SLC25A26	SAMC	solute carrier family 25 (S-adenosylmethionine carrier), member 26	protein-coding
19-PTNLD28-TUMOR_peak_65839	chr22	44319569	44319812	+	7.19331	NA	promoter-TSS (NM_025225)	promoter-TSS (NM_025225)	71	NM_025225	80339	Hs.654800	NM_025225	HPRD:12430	PNPLA3	ADPN|C22orf20|iPLA(2)epsilon	patatin-like phospholipase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_72446	chr3	175504959	175505059	+	7.19331	NA	intron (NM_207015, intron 13 of 13)	L1HS|LINE|L1	-10888	NR_046714	100874245	Hs.614827	NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102320	chr9	16816129	16816235	+	7.19331	NA	intron (NM_017637, intron 1 of 6)	intron (NM_017637, intron 1 of 6)	54604	NM_017637	54796	Hs.656581	NM_017637	HPRD:12274	BNC2	BSN2	basonuclin 2	protein-coding
19-PTNLD28-TUMOR_peak_8833	chr1	184751090	184751271	+	7.19331	NA	Intergenic	Intergenic	-27139	NM_025191	80267	Hs.523811	NM_025191	HPRD:10724	EDEM3	C1orf22	ER degradation enhancer, mannosidase alpha-like 3	protein-coding
19-PTNLD28-TUMOR_peak_73086	chr3	188561466	188561554	+	7.19331	NA	intron (NM_001167671, intron 8 of 10)	AluYa5|SINE|Alu	103918	NR_046873	100874043	Hs.616287	NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_110084	chrY	1660362	1660529	+	7.19331	NA	promoter-TSS (NR_027383)	promoter-TSS (NR_027383)	-41	NM_005088	8227	Hs.522572	NM_005088	HPRD:02419	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A kinase (PRKA) anchor protein 17A	protein-coding
19-PTNLD28-TUMOR_peak_67875	chr3	45666105	45666206	+	7.19331	NA	intron (NM_014240, intron 1 of 7)	AluY|SINE|Alu	29832	NM_014240	8994	Hs.193370	NM_014240		LIMD1	-	LIM domains containing 1	protein-coding
19-PTNLD28-TUMOR_peak_93069	chr7	70079775	70079892	+	7.19331	NA	intron (NM_001127231, intron 5 of 17)	intron (NM_001127231, intron 5 of 17)	-517690	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_46225	chr18	68166496	68166878	+	7.19331	NA	Intergenic	Intergenic	-114860	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_60144	chr20	21662286	21662484	+	7.19331	NA	intron (NR_109878, intron 1 of 4)	intron (NR_109878, intron 1 of 4)	21838	NR_109878	101929608	Hs.694665	NR_109878		LOC101929608	-	uncharacterized LOC101929608	ncRNA
19-PTNLD28-TUMOR_peak_107348	chrX	1710362	1710529	+	7.19331	NA	promoter-TSS (NM_005088)	promoter-TSS (NM_005088)	-41	NR_027383	8227	Hs.522572	NM_005088	HPRD:02419	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A kinase (PRKA) anchor protein 17A	protein-coding
19-PTNLD28-TUMOR_peak_53037	chr2	63949350	63949452	+	7.19331	NA	Intergenic	SVA_F|Other|Other	-118697	NM_001001521	7360	Hs.516217	NM_006759	HPRD:08934	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
19-PTNLD28-TUMOR_peak_49191	chr19	42289574	42289753	+	7.19331	NA	Intergenic	Intergenic	-10859	NM_001277163	1084	Hs.11	NM_001815	HPRD:16450	CEACAM3	CD66D|CEA|CGM1|W264|W282	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding
19-PTNLD28-TUMOR_peak_10664	chr1	228771552	228771640	+	7.19274	NA	Intergenic	CpG	-8798	NR_037962	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_107206	chrUn_gl000225	93480	93578	+	7.19240	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
19-PTNLD28-TUMOR_peak_58334	chr2	217931596	217931857	+	7.19233	NA	Intergenic	Intergenic	-206944	NM_003284	7141	Hs.3017	NM_003284	HPRD:01830	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
19-PTNLD28-TUMOR_peak_28803	chr13	99310215	99310417	+	7.19233	NA	Intergenic	Intergenic	-80911	NM_001286649	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_34288	chr15	70581886	70582221	+	7.19233	NA	Intergenic	Intergenic	-191797	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_55466	chr2	122818852	122819031	+	7.19233	NA	Intergenic	Intergenic	305820	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_106812	chr9	139962311	139962413	+	7.19233	NA	intron (NM_178448, intron 1 of 5)	intron (NM_178448, intron 1 of 5)	2666	NM_178448	89958	Hs.19322	NM_178448	HPRD:12943	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_68759	chr3	64049227	64049961	+	7.19233	NA	Intergenic	MIRc|SINE|MIR	-4046	NR_045697	100652759	Hs.731187	NR_045697	ENSG00000241111	PRICKLE2-AS1	-	PRICKLE2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43560	chr17	74502573	74502697	+	7.19233	NA	Intergenic	Intergenic	-5126	NM_024599	79651	Hs.464157	NM_024599	HPRD:07987	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG	rhomboid 5 homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_9348	chr1	202545516	202545635	+	7.19233	NA	intron (NM_032104, intron 12 of 12)	intron (NM_032104, intron 12 of 12)	36333	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_21554	chr11	118979027	118979199	+	7.19233	NA	intron (NM_014807, intron 1 of 13)	intron (NM_014807, intron 1 of 13)	1053	NM_001290474	9854	Hs.26899	NM_014807		C2CD2L	TMEM24	C2CD2-like	protein-coding
19-PTNLD28-TUMOR_peak_13669	chr10	54638827	54639062	+	7.19233	NA	Intergenic	Intergenic	-107484	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_107991	chrX	40028942	40029161	+	7.19233	NA	intron (NM_001123384, intron 1 of 13)	CpG	7531	NM_001123383	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_26138	chr12	108814807	108814895	+	7.19233	NA	Intergenic	SVA_B|Other|Other	52615	NR_120483	102723562	Hs.455693	NR_120483		LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
19-PTNLD28-TUMOR_peak_48036	chr19	18344063	18344164	+	7.19233	NA	5' UTR (NM_000923, exon 2 of 16)	5' UTR (NM_000923, exon 2 of 16)	-6828	NM_001098818	5143	Hs.132584	NM_000923	HPRD:02529	PDE4C	DPDE1	phosphodiesterase 4C, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_57122	chr2	177001508	177001676	+	7.19233	NA	non-coding (NR_038435, exon 1 of 3)	non-coding (NR_038435, exon 1 of 3)	234	NR_038435	100506783	Hs.667234	NR_038435		HOXD-AS2	-	HOXD cluster antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_14590	chr10	81741438	81741672	+	7.19233	NA	Intergenic	CpG	-32694	NM_003019	6441	Hs.253495	NM_003019	HPRD:01522	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
19-PTNLD28-TUMOR_peak_25724	chr12	97469473	97469644	+	7.19233	NA	Intergenic	Intergenic	168314	NM_001135175	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_390	chr1	6557578	6557904	+	7.19233	NA	promoter-TSS (NM_001265592)	promoter-TSS (NM_001265592)	-257	NM_001042663	57449	Hs.284232	NM_020631	HPRD:11104	PLEKHG5	CMTRIC|DSMA4|GEF720|Syx|Tech	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding
19-PTNLD28-TUMOR_peak_762	chr1	11538809	11538989	+	7.19233	NA	promoter-TSS (NM_020780)	promoter-TSS (NM_020780)	-396	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	PTCHD2	DISP3	patched domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_59737	chr20	9049996	9050196	+	7.19233	NA	intron (NM_001172646, intron 1 of 37)	intron (NM_001172646, intron 1 of 37)	395	NM_001172646	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_13192	chr10	43700537	43700677	+	7.19233	NA	intron (NM_001282862, intron 2 of 12)	intron (NM_001282862, intron 2 of 12)	24580	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_53921	chr2	87303073	87303185	+	7.19167	NA	non-coding (NR_026846, exon 1 of 11)	non-coding (NR_026846, exon 1 of 11)	407	NR_026846	285074	Hs.424184	NM_001012626	HPRD:17345	LOC285074	-	anaphase promoting complex subunit 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_18467	chr11	47428537	47428689	+	7.18972	NA	Intergenic	Intergenic	-1433	NM_152264	91252	Hs.523664	NM_152264	ENSG00000165915	SLC39A13	-	solute carrier family 39 (zinc transporter), member 13	protein-coding
19-PTNLD28-TUMOR_peak_3016	chr1	44006612	44006765	+	7.18972	NA	intron (NM_130440, intron 2 of 32)	intron (NM_130440, intron 2 of 32)	10141	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_12087	chr10	13142835	13142992	+	7.18940	NA	intron (NM_021980, intron 1 of 13)	intron (NM_021980, intron 1 of 13)	831	NM_001008211	10133	Hs.332706	NM_021980	HPRD:03891	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
19-PTNLD28-TUMOR_peak_50146	chr19	53168434	53168535	+	7.18940	NA	intron (NM_001277949, intron 1 of 4)	intron (NM_001277949, intron 1 of 4)	25350	NM_001277945	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_24392	chr12	53135292	53135401	+	7.18636	NA	Intergenic	Intergenic	35783	NM_015848	51350	Hs.654392	NM_015848	HPRD:17123	KRT76	HUMCYT2A|KRT2B|KRT2P	keratin 76	protein-coding
19-PTNLD28-TUMOR_peak_101354	chr8	140559987	140560075	+	7.18636	NA	Intergenic	HERVE-int|LTR|ERV1	155268	NR_104210	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_35874	chr16	2998112	2998307	+	7.18636	NA	intron (NM_032296, intron 9 of 9)	intron (NM_032296, intron 9 of 9)	-16008	NM_001253725	79412	Hs.661128	NM_024507	HPRD:13933	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_98852	chr8	56757164	56757323	+	7.18636	NA	Intergenic	Intergenic	-35143	NM_001111097	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_72758	chr3	183993897	183993990	+	7.18636	NA	exon (NM_001100120, exon 1 of 19)	exon (NM_001100120, exon 1 of 19)	144	NM_001100121	9718	Hs.146161	NM_014693	HPRD:09931	ECE2	-	endothelin converting enzyme 2	protein-coding
19-PTNLD28-TUMOR_peak_35595	chr16	204462	204578	+	7.18636	NA	TTS (NM_005332)	TTS (NM_005332)	1666	NM_005332	3050	Hs.585357	NM_005332		HBZ	HBZ-T1|HBZ1	hemoglobin, zeta	protein-coding
19-PTNLD28-TUMOR_peak_92649	chr7	55463366	55463674	+	7.18636	NA	intron (NM_018697, intron 2 of 8)	Tigger3a|DNA|TcMar-Tigger	30379	NM_018697	55915	Hs.595384	NM_018697	HPRD:13956	LANCL2	GPR69B|TASP	LanC lantibiotic synthetase component C-like 2 (bacterial)	protein-coding
19-PTNLD28-TUMOR_peak_12506	chr10	25541987	25542154	+	7.18636	NA	intron (NM_020752, intron 2 of 10)	L1PA2|LINE|L1	-76865	NR_027333	100128811	Hs.700407	NR_027333	ENSG00000233642	GPR158-AS1	-	GPR158 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41307	chr17	37778371	37778495	+	7.18636	NA	Intergenic	Intergenic	-4744	NM_032192	84152	Hs.286192	NM_032192	HPRD:05097	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding
19-PTNLD28-TUMOR_peak_91599	chr7	23245604	23245953	+	7.18636	NA	Intergenic	CpG	24332	NM_007342	11097	Hs.408241	NM_007342	HPRD:14855	NUPL2	CG1|NLP-1|NLP_1|hCG1	nucleoporin like 2	protein-coding
19-PTNLD28-TUMOR_peak_2039	chr1	31976951	31977103	+	7.18636	NA	Intergenic	Intergenic	5188	NR_034112	149086	Hs.729905	NR_034112	ENSG00000228682	LINC01225	-	long intergenic non-protein coding RNA 1225	pseudo
19-PTNLD28-TUMOR_peak_32350	chr14	105830851	105830962	+	7.18636	NA	intron (NM_001243127, intron 4 of 23)	Tigger3c|DNA|TcMar-Tigger	-34014	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
19-PTNLD28-TUMOR_peak_70865	chr3	132050180	132050393	+	7.18636	NA	intron (NM_001292037, intron 2 of 8)	intron (NM_001292037, intron 2 of 8)	14075	NM_001134194	55	Hs.433060	NM_001099	HPRD:01378	ACPP	5'-NT|ACP-3|ACP3	acid phosphatase, prostate	protein-coding
19-PTNLD28-TUMOR_peak_74507	chr4	10534748	10534861	+	7.18636	NA	intron (NM_052964, intron 11 of 18)	AluSz|SINE|Alu	-75772	NM_053042	85460	Hs.455089	NM_053042	HPRD:13889	ZNF518B	-	zinc finger protein 518B	protein-coding
19-PTNLD28-TUMOR_peak_98292	chr8	38724232	38724331	+	7.18636	NA	Intergenic	MER41A|LTR|ERV1	-34472	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_38587	chr16	70987504	70987693	+	7.18449	NA	intron (NM_001270974, intron 40 of 85)	intron (NM_001270974, intron 40 of 85)	-152537	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_65564	chr22	39638771	39639162	+	7.18449	NA	intron (NM_002608, intron 1 of 6)	CpG	1991	NM_002608	5155	Hs.1976	NM_002608	HPRD:01815	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet-derived growth factor beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_42375	chr17	53353957	53354115	+	7.18449	NA	intron (NM_002126, intron 2 of 3)	L2|LINE|L2	11715	NM_002126	3131	Hs.196952	NM_002126	HPRD:00797	HLF	-	hepatic leukemia factor	protein-coding
19-PTNLD28-TUMOR_peak_30590	chr14	59809999	59810179	+	7.18449	NA	intron (NM_001270520, intron 16 of 24)	intron (NM_001270520, intron 16 of 24)	79930	NM_014992	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_58727	chr2	228725067	228725317	+	7.18449	NA	Intergenic	Intergenic	-11135	NM_178821	164781	Hs.424594	NM_178821	HPRD:08079	DAW1	ODA16|WDR69	dynein assembly factor with WDR repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_103319	chr9	45441946	45442150	+	7.18109	NA	Intergenic	SST1|Satellite|centr	-436758	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_87037	chr6	35655821	35655954	+	7.18109	NA	intron (NM_001145775, intron 2 of 11)	CpG	805	NM_001145776	2289	Hs.407190	NM_004117	HPRD:04019	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_12	chr1	157524	157628	+	7.17686	NA	Intergenic	AluJr4|SINE|Alu	-17010	NR_039983	729737	Hs.534942	NR_039983		LOC729737	-	uncharacterized LOC729737	ncRNA
19-PTNLD28-TUMOR_peak_24354	chr12	52763593	52763899	+	7.17624	NA	Intergenic	Intergenic	-2437	NM_002283	3891	Hs.182507	NM_002283	HPRD:04139	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
19-PTNLD28-TUMOR_peak_84392	chr5	177634267	177634441	+	7.17624	NA	intron (NM_031266, intron 5 of 7)	intron (NM_031266, intron 5 of 7)	2846	NM_031266	3182	Hs.591731	NM_004499	HPRD:04067	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
19-PTNLD28-TUMOR_peak_86166	chr6	26553694	26553847	+	7.17523	NA	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	15198	NM_006353	10473	Hs.236774	NM_006353		HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
19-PTNLD28-TUMOR_peak_98483	chr8	42397127	42397291	+	7.17418	NA	promoter-TSS (NM_001257181)	promoter-TSS (NM_001257181)	147	NM_006749	6575	Hs.653173	NM_006749	HPRD:08865	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1	solute carrier family 20 (phosphate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_34507	chr15	74950371	74950548	+	7.17179	NA	intron (NM_001142444, intron 4 of 7)	intron (NM_001142444, intron 4 of 7)	37927	NM_001142443	80153	Hs.96852	NM_025083	HPRD:07954	EDC3	LSM16|YJDC|YJEFN2	enhancer of mRNA decapping 3	protein-coding
19-PTNLD28-TUMOR_peak_51759	chr2	27763736	27763898	+	7.17179	NA	Intergenic	SVA_D|Other|Other	-35572	NM_032266	84226	Hs.131021	NM_032266	HPRD:09849	C2orf16	-	chromosome 2 open reading frame 16	protein-coding
19-PTNLD28-TUMOR_peak_5619	chr1	113405748	113405966	+	7.17179	NA	Intergenic	MER21A|LTR|ERVL	-12592	NR_103746	100996702	Hs.632431	NR_103746	ENSG00000215866	LINC01356	-	long intergenic non-protein coding RNA 1356	ncRNA
19-PTNLD28-TUMOR_peak_107454	chrX	7063604	7063792	+	7.17179	NA	intron (NM_001135565, intron 1 of 4)	Tigger16a|DNA|TcMar-Tigger	-2203	NR_039924	100616467		NR_039924	miRBase:MI0017408	MIR4767	-	microRNA 4767	ncRNA
19-PTNLD28-TUMOR_peak_88339	chr6	74295840	74296056	+	7.17179	NA	Intergenic	AluJb|SINE|Alu	-65193	NM_001402	1915	Hs.535192	NM_001402	HPRD:00559	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_79052	chr5	15014115	15014215	+	7.17179	NA	Intergenic	Intergenic	-142278	NM_054027	56172	Hs.156727	NM_054027	HPRD:05509	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding
19-PTNLD28-TUMOR_peak_8636	chr1	181392595	181392692	+	7.17179	NA	Intergenic	Intergenic	-60043	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_10281	chr1	223429362	223429805	+	7.17179	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	107961	NM_017982	55061	Hs.497841	NM_017982	HPRD:07641	SUSD4	PRO222	sushi domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_8204	chr1	172363339	172363534	+	7.17179	NA	intron (NM_001136127, intron 19 of 19)	intron (NM_001136127, intron 19 of 19)	-26392	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_52579	chr2	46691752	46691850	+	7.17179	NA	Intergenic	Intergenic	-14903	NM_001145051	388946	Hs.733348	NM_001145051	ENSG00000187600	TMEM247	-	transmembrane protein 247	protein-coding
19-PTNLD28-TUMOR_peak_36627	chr16	19440714	19440875	+	7.17131	NA	intron (NM_001261841, intron 1 of 21)	intron (NM_001261841, intron 1 of 21)	11776	NM_001261841	79838	Hs.115838	NM_024780	HPRD:15516	TMC5	-	transmembrane channel-like 5	protein-coding
19-PTNLD28-TUMOR_peak_63124	chr21	32659637	32659767	+	7.17131	NA	intron (NM_003253, intron 3 of 28)	intron (NM_003253, intron 3 of 28)	-248907	NM_001099219	728299	Hs.580875	NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
19-PTNLD28-TUMOR_peak_183	chr1	1822516	1822709	+	7.17131	NA	promoter-TSS (NM_002074)	promoter-TSS (NM_002074)	-56	NM_002074	2782	Hs.430425	NM_002074	HPRD:00766	GNB1	-	guanine nucleotide binding protein (G protein), beta polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_28391	chr13	60971995	60972103	+	7.17131	NA	intron (NM_001146070, intron 1 of 13)	intron (NM_001146070, intron 1 of 13)	622	NM_001146070	81550	Hs.525061	NM_030794	HPRD:11625	TDRD3	-	tudor domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_11361	chr1	243759699	243759906	+	7.17131	NA	intron (NM_181690, intron 7 of 13)	L1ME1|LINE|L1	246782	NM_181690	10000	Hs.498292	NM_005465	HPRD:06441	AKT3	MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	v-akt murine thymoma viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_73792	chr4	1033430	1033546	+	7.16908	NA	Intergenic	Intergenic	27236	NM_021923	53834	Hs.193326	NM_021923	HPRD:16163	FGFRL1	FGFR5|FHFR	fibroblast growth factor receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_43496	chr17	73892034	73892290	+	7.16802	NA	intron (NM_001256124, intron 1 of 4)	AluY|SINE|Alu	922	NM_173547	201292	Hs.189823	NM_173547	HPRD:15569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
19-PTNLD28-TUMOR_peak_19953	chr11	73356297	73356482	+	7.16802	NA	promoter-TSS (NM_001130033)	promoter-TSS (NM_001130033)	-834	NM_001130033	58473	Hs.445489	NM_021200	HPRD:09630	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding
19-PTNLD28-TUMOR_peak_18342	chr11	45685397	45685562	+	7.16722	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	1727	NM_003654	8534	Hs.104576	NM_003654		CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_101140	chr8	134468103	134468213	+	7.16722	NA	3' UTR (NM_003033, exon 9 of 9)	3' UTR (NM_003033, exon 9 of 9)	116025	NM_173344	6482	Hs.374257	NM_003033	HPRD:06219	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_26863	chr12	123215009	123215125	+	7.16722	NA	promoter-TSS (NM_032554)	promoter-TSS (NM_032554)	62	NM_032554	27198	Hs.610873	NM_032554		HCAR1	GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_99464	chr8	90770377	90770478	+	7.16722	NA	exon (NM_003821, exon 1 of 11)	exon (NM_003821, exon 1 of 11)	452	NM_003821	8767	Hs.103755	NM_003821	HPRD:04585	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_34543	chr15	75395389	75395477	+	7.16722	NA	Intergenic	AluJb|SINE|Alu	59823	NM_001301105	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_79420	chr5	34188503	34188594	+	7.16381	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-63915	NR_037951	100534612	Hs.171929	NR_037951		C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA
19-PTNLD28-TUMOR_peak_46394	chr18	77267927	77268037	+	7.16361	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	107708	NM_172389	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_97400	chr8	19129542	19129944	+	7.16361	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-26711	NR_038919	100128993	Hs.697742	NR_038919		LOC100128993	-	uncharacterized LOC100128993	ncRNA
19-PTNLD28-TUMOR_peak_86580	chr6	31126703	31126816	+	7.16361	NA	promoter-TSS (NM_019052).4	promoter-TSS (NM_019052).4	456	NM_007109	6941	Hs.584807	NM_007109	HPRD:15986	TCF19	SC1|TCF-19	transcription factor 19	protein-coding
19-PTNLD28-TUMOR_peak_98515	chr8	42996169	42996541	+	7.16361	NA	intron (NM_152419, intron 1 of 17)	CpG	763	NM_152419	138050	Hs.600384	NM_152419	ENSG00000165102	HGSNAT	HGNAT|MPS3C|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_40651	chr17	21190715	21190860	+	7.16136	NA	promoter-TSS (NM_002756)	promoter-TSS (NM_002756)	-561	NM_002756	5606	Hs.514012	NM_002756	HPRD:03816	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_93554	chr7	76940386	76940531	+	7.15869	NA	3' UTR (NM_017439, exon 31 of 31)	3' UTR (NM_017439, exon 31 of 31)	-104057	NR_110073	101927243	Hs.547753	NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
19-PTNLD28-TUMOR_peak_88043	chr6	53658461	53658596	+	7.15856	NA	Intergenic	Intergenic	-1250	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_86352	chr6	28865931	28866020	+	7.15856	NA	TTS (NR_104117)	TTS (NR_104117)	1668	NR_104117	414760	Hs.211005	NR_104117		HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_69188	chr3	78556043	78556283	+	7.15751	NA	Intergenic	Intergenic	512446	NM_001145845	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_68518	chr3	56903316	56903464	+	7.15751	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	47109	NM_001289698	50650	Hs.476402	NM_019555	HPRD:12480	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_72388	chr3	172347331	172347608	+	7.15751	NA	TTS (NM_001146276)	TTS (NM_001146276)	81539	NM_001146278	57552	Hs.444099	NM_020792	HPRD:07489	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_31591	chr14	89021092	89021469	+	7.15751	NA	promoter-TSS (NM_007039)	promoter-TSS (NM_007039)	-157	NM_007039	11099	Hs.437040	NM_007039	HPRD:04468	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding
19-PTNLD28-TUMOR_peak_15863	chr10	119217019	119217153	+	7.15751	NA	Intergenic	Intergenic	-82149	NM_173791	118987	Hs.501149	NM_173791		PDZD8	PDZK8|bA129M16.2	PDZ domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_85452	chr6	13014999	13015122	+	7.15705	NA	intron (NM_030948, intron 4 of 14)	CpG	280758	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_16439	chr11	152737	152843	+	7.15705	NA	Intergenic	AluJr4|SINE|Alu	-20870	NR_028326	100133161	Hs.645398	NR_028326		LINC01001	-	long intergenic non-protein coding RNA 1001	ncRNA
19-PTNLD28-TUMOR_peak_86728	chr6	32164192	32164406	+	7.15678	NA	promoter-TSS (NM_022107).6	promoter-TSS (NM_022107).6	-999	NM_022107	63940	Hs.520046	NM_022107	HPRD:13605	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G-protein signaling modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_101610	chr8	144372991	144373158	+	7.15676	NA	promoter-TSS (NM_030895)	promoter-TSS (NM_030895)	-485	NM_030895	79943	Hs.512740	NM_030895		ZNF696	-	zinc finger protein 696	protein-coding
19-PTNLD28-TUMOR_peak_94173	chr7	98434666	98434785	+	7.15666	NA	Intergenic	Intergenic	32948	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_4383	chr1	76081653	76081880	+	7.15666	NA	Intergenic	CpG	-4967	NM_152697	204962	Hs.654821	NM_152697	HPRD:14580	SLC44A5	CTL5	solute carrier family 44, member 5	protein-coding
19-PTNLD28-TUMOR_peak_41224	chr17	36505148	36505301	+	7.15666	NA	Intergenic	Intergenic	-2783	NM_014598	30837	Hs.514132	NM_014598		SOCS7	NAP4|NCKAP4	suppressor of cytokine signaling 7	protein-coding
19-PTNLD28-TUMOR_peak_58380	chr2	218816280	218816398	+	7.15666	NA	Intergenic	Intergenic	-7543	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_20522	chr11	89598081	89598266	+	7.15666	NA	intron (NR_049875, intron 2 of 4)	MER5A|DNA|hAT-Charlie	11012	NM_001164397	642446	Hs.730588	NM_001164397		TRIM64B	-	tripartite motif containing 64B	protein-coding
19-PTNLD28-TUMOR_peak_63676	chr21	43068486	43068609	+	7.15666	NA	Intergenic	Intergenic	-30915	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
19-PTNLD28-TUMOR_peak_1235	chr1	19977375	19977588	+	7.15666	NA	intron (NM_001278166, intron 1 of 3)	intron (NM_001278166, intron 1 of 3)	3377	NM_001278166	4681	Hs.654502	NM_005380	HPRD:09001	NBL1	D1S1733E|DAN|DAND1|NB|NO3	neuroblastoma 1, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_109956	chrX	153570867	153571244	+	7.15164	NA	Intergenic	CpG	31951	NM_001110556	2316	Hs.195464	NM_001456	HPRD:02060	FLNA	ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A, alpha	protein-coding
19-PTNLD28-TUMOR_peak_35892	chr16	3072405	3072519	+	7.15164	NA	TTS (NM_001288665)	TTS (NM_001288665)	-1570	NM_024339	79228	Hs.412304	NM_024339	HPRD:14504	THOC6	BBIS|WDR58|fSAP35	THO complex 6 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_225	chr1	2314155	2314274	+	7.14804	NA	intron (NR_125361, intron 5 of 6)	intron (NR_125361, intron 5 of 6)	8976	NR_125361	79906	Hs.642701	NM_024848	HPRD:07843	MORN1	-	MORN repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74057	chr4	4178737	4178825	+	7.14719	NA	Intergenic	Intergenic	49840	NM_177998	133060	Hs.534544	NM_177998	HPRD:07421	OTOP1	-	otopetrin 1	protein-coding
19-PTNLD28-TUMOR_peak_60506	chr20	31142388	31142551	+	7.14719	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	30406	NM_001256798	140688	Hs.516978	NM_080616	HPRD:10728	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4-like	protein-coding
19-PTNLD28-TUMOR_peak_5214	chr1	101774999	101775092	+	7.14719	NA	Intergenic	Intergenic	31406	NR_046482	100873740		NR_046482	ENSG00000207116	RNU6-31P	RNU6-31|RNU6-6	RNA, U6 small nuclear 31, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_19168	chr11	64443002	64443170	+	7.14719	NA	intron (NM_138732, intron 6 of 19)	intron (NM_138732, intron 6 of 19)	-32299	NM_138734	9379	Hs.372938	NM_015080	HPRD:11859	NRXN2	-	neurexin 2	protein-coding
19-PTNLD28-TUMOR_peak_680	chr1	10438602	10438823	+	7.14719	NA	3' UTR (NM_015074, exon 47 of 47)	3' UTR (NM_015074, exon 47 of 47)	-20373	NM_002631	5226	Hs.464071	NM_002631	HPRD:01391	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_35433	chr15	99523534	99523948	+	7.14719	NA	intron (NM_001167902, intron 2 of 4)	L1MC3|LINE|L1	25144	NM_001102612	145814	Hs.592021	NM_001102612	ENSG00000183571	PGPEP1L	-	pyroglutamyl-peptidase I-like	protein-coding
19-PTNLD28-TUMOR_peak_30381	chr14	54678748	54678889	+	7.14719	NA	Intergenic	Intergenic	-184855	NM_001130851	1033	Hs.84113	NM_005192	HPRD:00450	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin-dependent kinase inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_27682	chr13	30969388	30969535	+	7.14719	NA	Intergenic	Intergenic	-21410	NR_024464	100188949	Hs.439791	NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
19-PTNLD28-TUMOR_peak_82661	chr5	140174744	140175045	+	7.14719	NA	exon (NM_018905, exon 1 of 4)	exon (NM_018905, exon 1 of 4)	450	NM_031495	56146	Hs.199343	NM_018905	HPRD:07320	PCDHA2	PCDH-ALPHA2	protocadherin alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_13243	chr10	44203256	44203454	+	7.14719	NA	Intergenic	Intergenic	-59029	NM_006973	7580	Hs.522885	NM_006973	HPRD:01924	ZNF32	KOX30	zinc finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_34189	chr15	68992971	68993284	+	7.14719	NA	intron (NM_006091, intron 3 of 11)	intron (NM_006091, intron 3 of 11)	68800	NM_001190457	10391	Hs.551213	NM_006091	HPRD:05416	CORO2B	CLIPINC	coronin, actin binding protein, 2B	protein-coding
19-PTNLD28-TUMOR_peak_4700	chr1	87889611	87889705	+	7.14719	NA	Intergenic	Intergenic	-52320	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
19-PTNLD28-TUMOR_peak_36077	chr16	5253035	5253133	+	7.14719	NA	Intergenic	SVA_E|Other|Other	-105263	NM_001289029	196483	Hs.406461	NM_201400	HPRD:18018	FAM86A	-	family with sequence similarity 86, member A	protein-coding
19-PTNLD28-TUMOR_peak_27683	chr13	30969655	30969827	+	7.14719	NA	Intergenic	Intergenic	-21690	NR_024464	100188949	Hs.439791	NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
19-PTNLD28-TUMOR_peak_91453	chr7	19234107	19234195	+	7.14719	NA	Intergenic	L1PA2|LINE|L1	-49107	NM_152898	222894	Hs.592168	NM_152898	HPRD:16890	FERD3L	N-TWIST|NATO3|NTWIST|bHLHa31	Fer3-like bHLH transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_97372	chr8	18244583	18244699	+	7.14719	NA	Intergenic	CpG	-4114	NM_000015	10	Hs.2	NM_000015	HPRD:02000	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_37873	chr16	53898884	53899016	+	7.14719	NA	intron (NM_001080432, intron 4 of 8)	intron (NM_001080432, intron 4 of 8)	161075	NM_001080432	79068	Hs.528833	NM_001080432		FTO	ALKBH9	fat mass and obesity associated	protein-coding
19-PTNLD28-TUMOR_peak_38020	chr16	57235254	57235437	+	7.14719	NA	intron (NM_133368, intron 1 of 14)	SVA_D|Other|Other	15104	NM_133368	89970	Hs.460885	NM_133368	HPRD:13908	RSPRY1	-	ring finger and SPRY domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89191	chr6	114664681	114664919	+	7.14719	NA	Intergenic	CpG	-280759	NM_153612	222537	Hs.645477	NM_153612	HPRD:13674	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_63171	chr21	33605447	33605558	+	7.14719	NA	Intergenic	Intergenic	45874	NM_018944	54069	Hs.190518	NM_018944	HPRD:10749	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
19-PTNLD28-TUMOR_peak_59457	chr20	1745181	1745277	+	7.14719	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	15163	NR_037142	100289473	Hs.641525	NR_037142	ENSG00000232528	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26061	chr12	107295210	107295314	+	7.14719	NA	Intergenic	Intergenic	-54282	NM_152261	90488	Hs.257664	NM_152261	HPRD:14462	TMEM263	C12orf23	transmembrane protein 263	protein-coding
19-PTNLD28-TUMOR_peak_25032	chr12	65920133	65920393	+	7.14719	NA	intron (NR_120432, intron 4 of 4)	intron (NR_120432, intron 4 of 4)	115889	NR_120433	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_45046	chr18	25755441	25755544	+	7.14688	NA	intron (NM_001792, intron 1 of 15)	CpG	1953	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_80804	chr5	76134482	76134594	+	7.14684	NA	Intergenic	Intergenic	-11288	NM_130772	170591	Hs.482563	NM_130772		S100Z	Gm625|S100-zeta	S100 calcium binding protein Z	protein-coding
19-PTNLD28-TUMOR_peak_106892	chr9	140905445	140905568	+	7.14684	NA	intron (NM_000718, intron 17 of 45)	intron (NM_000718, intron 17 of 45)	34017	NR_121582	101928786	Hs.678847	NR_121582		LOC101928786	-	uncharacterized LOC101928786	ncRNA
19-PTNLD28-TUMOR_peak_40601	chr17	20025094	20025244	+	7.14684	NA	intron (NM_001033553, intron 3 of 14)	intron (NM_001033553, intron 3 of 14)	-34138	NM_001033554	92521	Hs.431045	NM_152904	HPRD:12301	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
19-PTNLD28-TUMOR_peak_7385	chr1	157044156	157044472	+	7.14684	NA	Intergenic	Intergenic	25286	NM_001004341	440695	Hs.127138	NM_001004341	HPRD:13365	ETV3L	-	ets variant 3-like	protein-coding
19-PTNLD28-TUMOR_peak_32364	chr14	105978101	105978263	+	7.14684	NA	Intergenic	Intergenic	-14771	NM_025268	80757	Hs.157527	NM_025268	HPRD:14652	TMEM121	hole	transmembrane protein 121	protein-coding
19-PTNLD28-TUMOR_peak_41718	chr17	42452161	42452462	+	7.14684	NA	intron (NM_000419, intron 27 of 29)	intron (NM_000419, intron 27 of 29)	-11076	NM_198475	284069	Hs.154001	NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171, member A2	protein-coding
19-PTNLD28-TUMOR_peak_6424	chr1	146745563	146745661	+	7.14684	NA	intron (NM_004284, intron 12 of 22)	intron (NM_004284, intron 12 of 22)	31321	NM_001256337	9557	Hs.191164	NM_004284	HPRD:09880	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_47520	chr19	13337457	13337573	+	7.14684	NA	intron (NM_001127221, intron 37 of 46)	intron (NM_001127221, intron 37 of 46)	76233	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_16288	chr10	131767319	131767408	+	7.14684	NA	Intergenic	CpG-3433	-5272	NM_001005463	253738	Hs.591374	NM_001005463	HPRD:16818	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
19-PTNLD28-TUMOR_peak_32365	chr14	105978386	105978532	+	7.14684	NA	Intergenic	L1MC4|LINE|L1	-14494	NM_025268	80757	Hs.157527	NM_025268	HPRD:14652	TMEM121	hole	transmembrane protein 121	protein-coding
19-PTNLD28-TUMOR_peak_76216	chr4	89242141	89242266	+	7.14684	NA	Intergenic	Intergenic	-36220	NM_152542	152926	Hs.43744	NM_152542	HPRD:15167	PPM1K	BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent, 1K	protein-coding
19-PTNLD28-TUMOR_peak_77490	chr4	148403756	148403924	+	7.14684	NA	intron (NM_001256283, intron 1 of 6)	intron (NM_001256283, intron 1 of 6)	1771	NM_001957	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_82835	chr5	142077627	142077769	+	7.14684	NA	promoter-TSS (NM_001144935)	promoter-TSS (NM_001144935)	-63	NM_001144935	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_2438	chr1	36788750	36789201	+	7.14284	NA	intron (NM_018166, intron 1 of 2)	CpG-886	780	NM_018166	55194	Hs.87016	NM_018166	HPRD:07690	EVA1B	C1orf78|FAM176B	eva-1 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_35190	chr15	90727759	90727907	+	7.14237	NA	promoter-TSS (NM_020210)	promoter-TSS (NM_020210)	-319	NM_020210	10509	Hs.474935	NM_020210	HPRD:10217	SEMA4B	SEMAC|SemC	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
19-PTNLD28-TUMOR_peak_66221	chr3	3841086	3841560	+	7.14237	NA	5' UTR (NM_020873, exon 1 of 2)	5' UTR (NM_020873, exon 1 of 2)	202	NM_020873	57633	Hs.163244	NM_020873	HPRD:14320	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_23451	chr12	26112710	26112839	+	7.14143	NA	promoter-TSS (NR_038228)	promoter-TSS (NR_038228)	-399	NR_038228	100506451	Hs.560092	NR_038227		RASSF8-AS1	-	RASSF8 atnisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29290	chr14	20136818	20137070	+	7.14143	NA	Intergenic	CpG	45547	NM_001197287	79334	Hs.554706	NM_001197287		OR11H2	C14orf15|OR11H2P|OR11H8P	olfactory receptor, family 11, subfamily H, member 2	protein-coding
19-PTNLD28-TUMOR_peak_12518	chr10	26059331	26059699	+	7.14143	NA	Intergenic	HERVH-int|LTR|ERV1	118874	NR_108067	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_3075	chr1	44574115	44574215	+	7.14143	NA	Intergenic	Intergenic	-10357	NM_173484	128209	Hs.567674	NM_173484	HPRD:08272	KLF17	ZNF393|Zfp393	Kruppel-like factor 17	protein-coding
19-PTNLD28-TUMOR_peak_47664	chr19	14667586	14667780	+	7.14143	NA	intron (NR_038103, intron 1 of 12)	intron (NR_038103, intron 1 of 12)	15206	NM_004146	4713	Hs.532853	NM_004146	HPRD:11957	NDUFB7	B18|CI-B18	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa	protein-coding
19-PTNLD28-TUMOR_peak_89345	chr6	125420888	125421054	+	7.14143	NA	Intergenic	CpG	-53904	NM_001300994	7164	Hs.591347	NM_003287	HPRD:07236	TPD52L1	D53|hD53	tumor protein D52-like 1	protein-coding
19-PTNLD28-TUMOR_peak_78608	chr5	691341	691434	+	7.13872	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	2123	NM_007030	11076	Hs.481466	NM_007030	HPRD:18522	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
19-PTNLD28-TUMOR_peak_19128	chr11	64018973	64019186	+	7.13776	NA	promoter-TSS (NM_001184883)	promoter-TSS (NM_001184883)	84	NM_001184883	5331	Hs.523761	NM_000932	HPRD:02577	PLCB3	-	phospholipase C, beta 3 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_49767	chr19	49371846	49371936	+	7.13247	NA	promoter-TSS (NM_001161354)	promoter-TSS (NM_001161354)	-7	NM_001161354	57664	Hs.9469	NM_020904	HPRD:09683	PLEKHA4	PEPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding
19-PTNLD28-TUMOR_peak_84150	chr5	174178212	174178491	+	7.12917	NA	promoter-TSS (NR_039777)	promoter-TSS (NR_039777)	-386	NR_039777	100616202		NR_039777	miRBase:MI0017261	MIR4634	-	microRNA 4634	ncRNA
19-PTNLD28-TUMOR_peak_74687	chr4	19085344	19085517	+	7.12917	NA	Intergenic	L1HS|LINE|L1	-1061947	NM_153686	254251	Hs.446201	NM_153686	HPRD:10088	LCORL	MLR1	ligand dependent nuclear receptor corepressor-like	protein-coding
19-PTNLD28-TUMOR_peak_93455	chr7	75733265	75733360	+	7.12917	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	55975	NM_005918	4191	Hs.520967	NM_005918	HPRD:01099	MDH2	M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_22765	chr12	6574752	6574862	+	7.12917	NA	intron (NM_001297438, intron 3 of 4)	intron (NM_001297438, intron 3 of 4)	5258	NM_014231	6843	Hs.20021	NM_014231	HPRD:01716	VAMP1	SPAX1|SYB1|VAMP-1	vesicle-associated membrane protein 1 (synaptobrevin 1)	protein-coding
19-PTNLD28-TUMOR_peak_66892	chr3	15346912	15347022	+	7.12917	NA	intron (NM_001018009, intron 2 of 8)	L2b|LINE|L2	27169	NM_004844	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_89618	chr6	137558766	137558875	+	7.12917	NA	Intergenic	Intergenic	-18253	NM_000416	3459	Hs.520414	NM_000416	HPRD:00127	IFNGR1	CD119|IFNGR	interferon gamma receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_87146	chr6	36937319	36937436	+	7.12917	NA	intron (NM_014341, intron 11 of 11)	intron (NM_014341, intron 11 of 11)	15168	NM_153370	221476	Hs.25391	NM_153370	ENSG00000164530	PI16	CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
19-PTNLD28-TUMOR_peak_97892	chr8	28176640	28176811	+	7.12917	NA	intron (NM_006228, intron 1 of 3)	MIRc|SINE|MIR	2076	NM_006228	5368	Hs.88218	NM_006228	HPRD:03268	PNOC	PPNOC	prepronociceptin	protein-coding
19-PTNLD28-TUMOR_peak_76372	chr4	100482380	100482473	+	7.12917	NA	intron (NM_001134665, intron 1 of 7)	intron (NM_001134665, intron 1 of 7)	2399	NM_152292	93587	Hs.380412	NM_152292	HPRD:15241	TRMT10A	HEL-S-88|RG9MTD2|TRM10	tRNA methyltransferase 10 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_48934	chr19	39223633	39223721	+	7.12808	NA	intron (NM_144691, intron 18 of 20)	intron (NM_144691, intron 18 of 20)	11437	NM_144691	147968	Hs.731775	NM_144691	HPRD:07007	CAPN12	-	calpain 12	protein-coding
19-PTNLD28-TUMOR_peak_73756	chr4	671817	671939	+	7.12573	NA	intron (NM_002477, intron 1 of 6)	(CGTG)n|Simple_repeat|Simple_repeat	167	NM_002477	4636	Hs.410970	NM_002477	HPRD:01182	MYL5	-	myosin, light chain 5, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_73936	chr4	2850326	2850478	+	7.12549	NA	intron (NM_001286645, intron 1 of 17)	AluJr|SINE|Alu	4525	NM_001286645	118	Hs.183706	NM_001119	HPRD:00036	ADD1	ADDA	adducin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_19069	chr11	63381071	63381166	+	7.12549	NA	intron (NM_001128203, intron 2 of 4)	intron (NM_001128203, intron 2 of 4)	791	NM_007069	11145	Hs.502775	NM_007069	HPRD:13671	PLA2G16	AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3	phospholipase A2, group XVI	protein-coding
19-PTNLD28-TUMOR_peak_104678	chr9	96848830	96848946	+	7.12549	NA	intron (NM_152422, intron 2 of 8)	L3|LINE|CR1	2177	NM_001253829	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_36503	chr16	15613090	15613221	+	7.12549	NA	intron (NM_033201, intron 2 of 5)	intron (NM_033201, intron 2 of 5)	17032	NM_001142469	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_27905	chr13	40340117	40340481	+	7.12332	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-102027	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_65872	chr22	44947153	44947361	+	7.12332	NA	Intergenic	ERVL-E-int|LTR|ERVL	-17963	NR_028411	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_58804	chr2	232238622	232238858	+	7.12332	NA	3' UTR (NM_001271466, exon 24 of 24)	3' UTR (NM_001271466, exon 24 of 24)	11321	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	ncRNA
19-PTNLD28-TUMOR_peak_49034	chr19	40372238	40372378	+	7.12332	NA	intron (NM_003890, intron 26 of 35)	LTR41|LTR|ERVL	-35254	NM_001436	2091	Hs.299002	NM_001436	HPRD:00617	FBL	FIB|FLRN|RNU3IP1	fibrillarin	protein-coding
19-PTNLD28-TUMOR_peak_11183	chr1	237205282	237205394	+	7.12332	NA	promoter-TSS (NM_001035)	promoter-TSS (NM_001035)	-364	NM_001035	6262	Hs.109514	NM_001035	HPRD:01619	RYR2	ARVC2|ARVD2|RYR-2|RyR|VTSIP	ryanodine receptor 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_99060	chr8	67596859	67597050	+	7.12332	NA	intron (NM_001204173, intron 2 of 18)	intron (NM_001204173, intron 2 of 18)	17167	NM_001204173	100533105	Hs.613417	NM_001204173		C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_38824	chr16	77590139	77590354	+	7.12332	NA	Intergenic	Intergenic	-121235	NM_199355	170692	Hs.188746	NM_139054	HPRD:06333	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif, 18	protein-coding
19-PTNLD28-TUMOR_peak_36873	chr16	23846927	23847034	+	7.12332	NA	promoter-TSS (NM_002738)	promoter-TSS (NM_002738)	-320	NM_002738	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_34940	chr15	84403299	84403409	+	7.12332	NA	intron (NM_001301110, intron 3 of 29)	intron (NM_001301110, intron 3 of 29)	80516	NM_001301110	57188	Hs.459162	NM_207517	HPRD:12426	ADAMTSL3	ADAMTSL-3	ADAMTS-like 3	protein-coding
19-PTNLD28-TUMOR_peak_54256	chr2	96577243	96577471	+	7.12332	NA	Intergenic	Intergenic	-84628	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
19-PTNLD28-TUMOR_peak_24908	chr12	62654787	62654930	+	7.12020	NA	TTS (NR_106740)	TTS (NR_106740)	718	NR_106740	102465133		NR_106740		MIR6125	hsa-mir-6125	microRNA 6125	ncRNA
19-PTNLD28-TUMOR_peak_109863	chrX	152677237	152677418	+	7.12020	NA	Intergenic	CpG	-6454	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_34139	chr15	68132585	68132710	+	7.11727	NA	promoter-TSS (NR_125730).5	promoter-TSS (NR_125730).5	-264	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_86351	chr6	28864913	28865053	+	7.11261	NA	non-coding (NR_104117, exon 2 of 2)	non-coding (NR_104117, exon 2 of 2)	676	NR_104117	414760	Hs.211005	NR_104117		HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_73707	chr3	197897712	197897824	+	7.11261	NA	intron (NM_001145248, intron 6 of 6)	MER21C|LTR|ERVL	18531	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_59531	chr20	3048431	3048519	+	7.11056	NA	Intergenic	AluYc|SINE|Alu	-3791	NM_000915	5020	Hs.113216	NM_000915	HPRD:08880	OXT	OT|OT-NPI|OXT-NPI	oxytocin/neurophysin I prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_60410	chr20	30157535	30157683	+	7.10818	NA	TTS (NM_030789)	TTS (NM_030789)	3457	NR_046853	100874042	Hs.743198	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_46479	chr19	344822	344956	+	7.10739	NA	promoter-TSS (NM_017550)	promoter-TSS (NM_017550)	-98	NM_017550	54531	Hs.101891	NM_017550	HPRD:11130	MIER2	KIAA1193|Mi-er2	mesoderm induction early response 1, family member 2	protein-coding
19-PTNLD28-TUMOR_peak_108759	chrX	73603547	73603643	+	7.10739	NA	Intergenic	L1M4c|LINE|L1	-37733	NM_006517	6567	Hs.75317	NM_006517	HPRD:02106	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16, member 2 (thyroid hormone transporter)	protein-coding
19-PTNLD28-TUMOR_peak_22455	chr12	1926707	1926803	+	7.10739	NA	intron (NM_172364, intron 26 of 37)	SVA_D|Other|Other	-2678	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine-rich repeats and transmembrane domains 2	protein-coding
19-PTNLD28-TUMOR_peak_48906	chr19	38998044	38998178	+	7.10739	NA	intron (NM_000540, intron 57 of 105)	G-rich|Low_complexity|Low_complexity	73771	NM_001042723	6261	Hs.466664	NM_000540	HPRD:01618	RYR1	CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1 (skeletal)	protein-coding
19-PTNLD28-TUMOR_peak_39566	chr17	636273	636477	+	7.10739	NA	exon (NM_024792, exon 2 of 5)	exon (NM_024792, exon 2 of 5)	528	NM_024792	79850	Hs.154396	NM_024792	HPRD:13096	FAM57A	CT120	family with sequence similarity 57, member A	protein-coding
19-PTNLD28-TUMOR_peak_52178	chr2	38059860	38059965	+	7.10739	NA	intron (NR_110012, intron 2 of 3)	MER91C|DNA|hAT-Tip100	-3058	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
19-PTNLD28-TUMOR_peak_47531	chr19	13685724	13685813	+	7.10739	NA	Intergenic	Intergenic	-68494	NM_023035	773	Hs.501632	NM_000068	HPRD:03004	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding
19-PTNLD28-TUMOR_peak_57679	chr2	198755997	198756170	+	7.10739	NA	intron (NM_006226, intron 1 of 5)	MER5A|DNA|hAT-Charlie	86657	NM_006226	5334	Hs.153322	NM_006226		PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C-like 1	protein-coding
19-PTNLD28-TUMOR_peak_43036	chr17	65038657	65038745	+	7.10739	NA	Intergenic	Intergenic	-1951	NM_000727	786	Hs.147989	NM_000727	HPRD:00249	CACNG1	CACNLG	calcium channel, voltage-dependent, gamma subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_8629	chr1	181330578	181330684	+	7.10739	NA	Intergenic	Intergenic	-122055	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_93427	chr7	75420953	75421052	+	7.10739	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-1938	NM_006072	10344	Hs.131342	NM_006072	HPRD:05262	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	chemokine (C-C motif) ligand 26	protein-coding
19-PTNLD28-TUMOR_peak_87725	chr6	45030596	45030867	+	7.10739	NA	intron (NM_003599, intron 3 of 10)	L1PA2|LINE|L1	134776	NR_030313	693171		NR_030313		MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
19-PTNLD28-TUMOR_peak_11293	chr1	241520040	241520136	+	7.10739	NA	intron (NM_002924, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	442	NM_002924	6000	Hs.655739	NM_002924	HPRD:03948	RGS7	-	regulator of G-protein signaling 7	protein-coding
19-PTNLD28-TUMOR_peak_31210	chr14	73650929	73651021	+	7.10739	NA	intron (NM_000021, intron 5 of 11)	SVA_D|Other|Other	47832	NM_007318	5663	Hs.3260	NM_000021	HPRD:00087	PSEN1	AD3|FAD|PS-1|PS1|S182	presenilin 1	protein-coding
19-PTNLD28-TUMOR_peak_29669	chr14	27245638	27245744	+	7.10739	NA	intron (NR_110033, intron 3 of 3)	MIR3|SINE|MIR	-32863	NR_110557	102724890	Hs.569381	NR_110556		LOC102724890	-	uncharacterized LOC102724890	ncRNA
19-PTNLD28-TUMOR_peak_67403	chr3	32150933	32151179	+	7.10469	NA	intron (NM_015141, intron 1 of 7)	intron (NM_015141, intron 1 of 7)	3053	NM_015141	23171	Hs.82432	NM_015141	HPRD:10008	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1-like	protein-coding
19-PTNLD28-TUMOR_peak_40069	chr17	8077101	8077224	+	7.10469	NA	3' UTR (NM_032354, exon 5 of 5)	3' UTR (NM_032354, exon 5 of 5)	2552	NM_183065	84314	Hs.513933	NM_032354		TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
19-PTNLD28-TUMOR_peak_62696	chr21	9934874	9934970	+	7.10469	NA	intron (NR_038329, intron 2 of 2)	intron (NR_038329, intron 2 of 2)	33672	NR_038327	100132288	Hs.487562	NM_174948		TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_52880	chr2	56411822	56412122	+	7.10469	NA	exon (NM_001080433, exon 1 of 6)	exon (NM_001080433, exon 1 of 6)	714	NM_001080433	114800	Hs.117136	NM_001080433	ENSG00000055813	CCDC85A	-	coiled-coil domain containing 85A	protein-coding
19-PTNLD28-TUMOR_peak_102559	chr9	27385579	27385909	+	7.10263	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-88607	NM_001161585	54586	Hs.163070	NM_020641	HPRD:12932	EQTN	AFAF|C9orf11|SPACA8|equatorin	equatorin, sperm acrosome associated	protein-coding
19-PTNLD28-TUMOR_peak_14122	chr10	72164107	72164372	+	7.10191	NA	exon (NM_004096, exon 1 of 3)	exon (NM_004096, exon 1 of 3)	378	NM_004096	1979	Hs.621200	NM_004096	HPRD:03747	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_62110	chr20	52816279	52816466	+	7.10187	NA	Intergenic	Intergenic	-8130	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_90069	chr6	151949407	151949504	+	7.10187	NA	Intergenic	MIRb|SINE|MIR	-62176	NM_001122742	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_106634	chr9	137035984	137036115	+	7.10187	NA	Intergenic	Intergenic	-6363	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear (U12-dependent splicing)	snRNA
19-PTNLD28-TUMOR_peak_61710	chr20	48311133	48311282	+	7.10187	NA	intron (NM_004776, intron 1 of 8)	polypurine|Low_complexity|Low_complexity	19214	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_21361	chr11	116103237	116103502	+	7.10187	NA	Intergenic	Intergenic	-472451	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_32246	chr14	104314360	104314452	+	7.10187	NA	promoter-TSS (NM_015316)	promoter-TSS (NM_015316)	348	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	ncRNA
19-PTNLD28-TUMOR_peak_17549	chr11	19157059	19157147	+	7.10187	NA	intron (NM_001001483, intron 1 of 15)	L1PA3|LINE|L1	18411	NM_001001483	54503	Hs.188569	NM_019028	HPRD:15710	ZDHHC13	HIP14L|HIP3RP	zinc finger, DHHC-type containing 13	protein-coding
19-PTNLD28-TUMOR_peak_70573	chr3	127457205	127457388	+	7.10187	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	65515	NR_033429	80325	Hs.107812	NM_032548	HPRD:10513	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_62295	chr20	56135991	56136112	+	7.10187	NA	promoter-TSS (NM_002591)	promoter-TSS (NM_002591)	-86	NM_002591	5105	Hs.1872	NM_002591	HPRD:02028	PCK1	PEPCK-C|PEPCK1|PEPCKC	phosphoenolpyruvate carboxykinase 1 (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_18395	chr11	46330219	46330313	+	7.10187	NA	intron (NM_052854, intron 3 of 11)	intron (NM_052854, intron 3 of 11)	-24189	NM_201532	8525	Hs.502461	NM_003646	HPRD:03260	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase, zeta	protein-coding
19-PTNLD28-TUMOR_peak_52486	chr2	44815648	44815824	+	7.10187	NA	intron (NM_024766, intron 3 of 10)	SVA_F|Other|Other	-39077	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_67032	chr3	18466350	18466752	+	7.10187	NA	5' UTR (NM_002971, exon 1 of 11)	5' UTR (NM_002971, exon 1 of 11)	278	NM_002971	6304	Hs.517717	NM_002971	HPRD:03647	SATB1	-	SATB homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_100264	chr8	118946617	118947015	+	7.10187	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	177242	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_5992	chr1	120413673	120413820	+	7.10187	NA	Intergenic	Intergenic	25401	NM_021794	11085	Hs.283011	NM_021794	HPRD:05307	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
19-PTNLD28-TUMOR_peak_90395	chr6	161417409	161417625	+	7.10187	NA	intron (NM_006724, intron 1 of 25)	intron (NM_006724, intron 1 of 25)	4758	NM_001301072	4216	Hs.390428	NM_005922	HPRD:03886	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_55442	chr2	122328031	122328121	+	7.10187	NA	intron (NM_001142274, intron 2 of 37)	intron (NM_001142274, intron 2 of 37)	39620	NR_023343	100151683	Hs.689638	NR_023343	ENSG00000264229	RNU4ATAC	MOPD1|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear (U12-dependent splicing)	snRNA
19-PTNLD28-TUMOR_peak_52197	chr2	38337018	38337170	+	7.10187	NA	Intergenic	Intergenic	-21153	NR_027252	285154	Hs.353894	NM_173652	HPRD:14592	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11649	chr10	1416756	1417028	+	7.10187	NA	intron (NM_018702, intron 2 of 9)	intron (NM_018702, intron 2 of 9)	-151933	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14502	chr10	79940144	79940239	+	7.10187	NA	Intergenic	Intergenic	-68191	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
19-PTNLD28-TUMOR_peak_108918	chrX	93195261	93195359	+	7.10187	NA	Intergenic	L1PA2|LINE|L1	266298	NM_001171111	286499	Hs.110069	NM_173698	HPRD:06562	FAM133A	CT115	family with sequence similarity 133, member A	protein-coding
19-PTNLD28-TUMOR_peak_44161	chr17	81141615	81141737	+	7.10187	NA	Intergenic	Intergenic	-32990	NR_029406	388574	Hs.546918	NR_029406	ENSG00000232938	FLJ43681	-	ribosomal protein L23a pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26880	chr12	123394573	123394737	+	7.10187	NA	Intergenic	Intergenic	-13943	NM_024667	79720	Hs.507162	NM_024667	HPRD:07794	VPS37B	-	vacuolar protein sorting 37 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_47248	chr19	10773116	10773317	+	7.10187	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	8279	NM_004516	3609	Hs.465885	NM_004516	HPRD:04420	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80	interleukin enhancer binding factor 3, 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_7136	chr1	154965677	154966030	+	7.10187	NA	promoter-TSS (NM_018655)	promoter-TSS (NM_018655)	-209	NM_018655	55891	Hs.272399	NM_018655	HPRD:09569	LENEP	LEP503	lens epithelial protein	protein-coding
19-PTNLD28-TUMOR_peak_53440	chr2	72291142	72291230	+	7.10187	NA	Intergenic	L1PA2|LINE|L1	83805	NM_001277742	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_64169	chr22	16423867	16424155	+	7.10187	NA	Intergenic	CpG	25793	NM_001005239	81061	Hs.554706	NM_001005239		OR11H1	OR22-1	olfactory receptor, family 11, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_44601	chr18	11789981	11790327	+	7.10187	NA	intron (NM_001261443, intron 5 of 12)	intron (NM_001261443, intron 5 of 12)	38683	NM_001142339	2774	Hs.136295	NM_002071	HPRD:00758	GNAL	DYT25	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	protein-coding
19-PTNLD28-TUMOR_peak_87574	chr6	43296397	43296564	+	7.10187	NA	Intergenic	Intergenic	-19950	NM_206922	401262	Hs.653165	NM_206922	HPRD:16755	CRIP3	TLP|TLP-A|bA480N24.2	cysteine-rich protein 3	protein-coding
19-PTNLD28-TUMOR_peak_27522	chr13	25556854	25557082	+	7.10187	NA	Intergenic	Intergenic	-14361	NR_026730	646405	Hs.620592	NM_001126062		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_48297	chr19	23941327	23941437	+	7.09866	NA	intron (NM_138286, intron 1 of 3)	CpG	311	NM_138286	148213	Hs.399952	NM_138286	HPRD:08102	ZNF681	-	zinc finger protein 681	protein-coding
19-PTNLD28-TUMOR_peak_39762	chr17	3791896	3792108	+	7.09866	NA	intron (NM_172207, intron 1 of 15)	CpG	2035	NM_172206	84254	Hs.8417	NM_032294	HPRD:13000	CAMKK1	CAMKKA	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_90226	chr6	157733119	157733220	+	7.09697	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	12122	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_25216	chr12	70081950	70082048	+	7.09258	NA	intron (NM_001282616, intron 3 of 3)	intron (NM_001282616, intron 3 of 3)	1058	NM_152439	144453	Hs.280782	NM_032735	HPRD:17484	BEST3	VMD2L3	bestrophin 3	protein-coding
19-PTNLD28-TUMOR_peak_40919	chr17	29297449	29297632	+	7.09258	NA	promoter-TSS (NM_001184992)	promoter-TSS (NM_001184992)	-416	NM_032322	84282	Hs.29874	NM_032322	HPRD:11506	RNF135	MMFD|REUL|Riplet	ring finger protein 135	protein-coding
19-PTNLD28-TUMOR_peak_97402	chr8	19135823	19135924	+	7.09258	NA	Intergenic	L2a|LINE|L2	-32841	NR_038919	100128993	Hs.697742	NR_038919		LOC100128993	-	uncharacterized LOC100128993	ncRNA
19-PTNLD28-TUMOR_peak_86722	chr6	32144862	32144973	+	7.09148	NA	intron (NM_032741, intron 1 of 6).3	intron (NM_032741, intron 1 of 6).3	971	NM_032741	10554	Hs.409230	NM_006411	HPRD:04372	AGPAT1	1-AGPAT1|G15|LPAAT-alpha|LPAATA	1-acylglycerol-3-phosphate O-acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_65189	chr22	32532081	32532217	+	7.08919	NA	Intergenic	Intergenic	14185	NR_040114	23782	Hs.581098	NR_040114	ENSG00000234479	AP1B1P1	ADTB1L1|dJ127L4.2	adaptor-related protein complex 1, beta 1 subunit pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_3389	chr1	48996523	48996704	+	7.08919	NA	Intergenic	Intergenic	-58733	NM_019073	54558	Hs.538103	NM_019073	HPRD:15430	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
19-PTNLD28-TUMOR_peak_57630	chr2	197457632	197458287	+	7.08919	NA	promoter-TSS (NM_020760)	promoter-TSS (NM_020760)	-624	NM_020760	57520	Hs.654742	NM_020760	HPRD:17099	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_88877	chr6	100015981	100016084	+	7.08919	NA	intron (NM_001013399, intron 1 of 11)	intron (NM_001013399, intron 1 of 11)	658	NM_005190	892	Hs.430646	NM_005190	HPRD:00456	CCNC	CycC	cyclin C	protein-coding
19-PTNLD28-TUMOR_peak_105509	chr9	116062425	116062589	+	7.08919	NA	Intergenic	Intergenic	-1187	NM_145051	138065	Hs.729641	NM_145051	HPRD:10082	RNF183	-	ring finger protein 183	protein-coding
19-PTNLD28-TUMOR_peak_27602	chr13	28713529	28713617	+	7.08919	NA	promoter-TSS (NR_029383)	promoter-TSS (NR_029383)	-262	NR_029383	100288730	Hs.123191	NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62075	chr20	52402754	52402924	+	7.08919	NA	Intergenic	Intergenic	89409	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_18457	chr11	47281185	47281283	+	7.08919	NA	intron (NM_001130101, intron 2 of 8)	intron (NM_001130101, intron 2 of 8)	1766	NM_005693	10062	Hs.438863	NM_005693	HPRD:07211	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1, group H, member 3	protein-coding
19-PTNLD28-TUMOR_peak_64743	chr22	24561724	24561948	+	7.08919	NA	intron (NM_012295, intron 31 of 36)	intron (NM_012295, intron 31 of 36)	-15608	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_96782	chr7	158766144	158766407	+	7.08379	NA	Intergenic	CpG	-34770	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
19-PTNLD28-TUMOR_peak_105994	chr9	126112230	126112367	+	7.08379	NA	Intergenic	Intergenic	-6148	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_87409	chr6	41338614	41338760	+	7.08379	NA	Intergenic	L2a|LINE|L2	35159	NM_001199510	9436	Hs.194721	NM_004828	HPRD:05168	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_95838	chr7	140242223	140242337	+	7.08379	NA	intron (NM_015689, intron 12 of 17)	L2c|LINE|L2	60062	NM_015689	27147	Hs.6385	NM_015689	HPRD:17210	DENND2A	FAM31D|KIAA1277	DENN/MADD domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_45372	chr18	39994029	39994196	+	7.08379	NA	intron (NR_046456, intron 5 of 7)	AluJo|SINE|Alu	227479	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_73148	chr3	189654127	189654281	+	7.08225	NA	Intergenic	Intergenic	106493	NR_030642	100126340		NR_030642		MIR944	MIRN944|hsa-mir-944	microRNA 944	ncRNA
19-PTNLD28-TUMOR_peak_58877	chr2	233305371	233305484	+	7.08039	NA	Intergenic	Intergenic	-15406	NM_001631	248	Hs.37009	NM_001631	HPRD:01376	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
19-PTNLD28-TUMOR_peak_79993	chr5	55937002	55937140	+	7.08039	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-35012	NM_001287053	101928448	Hs.208052	NM_001287053		LOC101928448	-	uncharacterized LOC101928448	protein-coding
19-PTNLD28-TUMOR_peak_66184	chr3	1996193	1996334	+	7.08039	NA	Intergenic	Intergenic	-144287	NM_175607	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_82173	chr5	132948224	132948490	+	7.08039	NA	promoter-TSS (NM_015082)	promoter-TSS (NM_015082)	-134	NM_015082	23105	Hs.483390	NM_015082	HPRD:17022	FSTL4	-	follistatin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_82066	chr5	131401217	131401309	+	7.08039	NA	Intergenic	Intergenic	4916	NM_000588	3562	Hs.694	NM_000588	HPRD:00987	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
19-PTNLD28-TUMOR_peak_9996	chr1	212769082	212769413	+	7.08039	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-12723	NM_001674	467	Hs.460	NM_001674	HPRD:04395	ATF3	-	activating transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_34550	chr15	75463122	75463290	+	7.08039	NA	Intergenic	LTR16D2|LTR|ERVL	-31015	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_10515	chr1	226814294	226814395	+	7.08039	NA	Intergenic	Intergenic	48425	NR_103784	100506443	Hs.664293	NR_103784		ITPKB-IT1	-	ITPKB intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_106483	chr9	134297962	134298159	+	7.08010	NA	Intergenic	Intergenic	-7417	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline-rich coiled-coil 2B	protein-coding
19-PTNLD28-TUMOR_peak_90361	chr6	160253989	160254229	+	7.08010	NA	Intergenic	Intergenic	32828	NM_001271862	154197	Hs.349077	NM_173516	HPRD:17868	PNLDC1	-	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73841	chr4	1581032	1581349	+	7.07907	NA	Intergenic	CpG	104528	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_19249	chr11	65123388	65123545	+	7.07907	NA	exon (NM_145719, exon 2 of 2)	exon (NM_145719, exon 2 of 2)	1184	NM_145719	220359	Hs.632121	NM_145719	HPRD:18187	TIGD3	-	tigger transposable element derived 3	protein-coding
19-PTNLD28-TUMOR_peak_6669	chr1	150228451	150228551	+	7.07907	NA	Intergenic	Intergenic	-1717	NM_012113	23632	Hs.528988	NM_012113	HPRD:05320	CA14	CAXiV	carbonic anhydrase XIV	protein-coding
19-PTNLD28-TUMOR_peak_19844	chr11	71846698	71846812	+	7.07801	NA	promoter-TSS (NM_000804)	promoter-TSS (NM_000804)	-16	NM_000804	2352	Hs.352	NM_000804	HPRD:03918	FOLR3	FR-G|FR-gamma|gamma-hFR	folate receptor 3 (gamma)	protein-coding
19-PTNLD28-TUMOR_peak_73408	chr3	194412852	194412984	+	7.07801	NA	Intergenic	Intergenic	6296	NM_153690	131583	Hs.435080	NM_153690	HPRD:13308	FAM43A	-	family with sequence similarity 43, member A	protein-coding
19-PTNLD28-TUMOR_peak_18766	chr11	59521582	59521713	+	7.07801	NA	promoter-TSS (NM_004177)	promoter-TSS (NM_004177)	-885	NM_001178040	6809	Hs.180711	NM_004177	HPRD:15985	STX3	STX3A	syntaxin 3	protein-coding
19-PTNLD28-TUMOR_peak_95345	chr7	130849133	130849245	+	7.07467	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	54334	NM_001145354	4289	Hs.44693	NM_013255	HPRD:16129	MKLN1	TWA2	muskelin 1, intracellular mediator containing kelch motifs	protein-coding
19-PTNLD28-TUMOR_peak_26866	chr12	123258729	123258925	+	7.07467	NA	promoter-TSS (NR_027918)	promoter-TSS (NR_027918)	-229	NR_027918	84660	Hs.592008	NM_032573	HPRD:15575	CCDC62	CT109|ERAP75|TSP-NY	coiled-coil domain containing 62	protein-coding
19-PTNLD28-TUMOR_peak_41939	chr17	45331494	45331606	+	7.07467	NA	intron (NM_000212, intron 1 of 14)	CpG	342	NM_000212	3690	Hs.218040	NM_000212	HPRD:01428	ITGB3	BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT	integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	protein-coding
19-PTNLD28-TUMOR_peak_31255	chr14	74299925	74300086	+	7.07467	NA	Intergenic	L1M5|LINE|L1	-18529	NM_001146154	145482	Hs.632344	NM_152444	HPRD:09782	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_15572	chr10	111766650	111766811	+	7.07467	NA	promoter-TSS (NM_001121)	promoter-TSS (NM_001121)	-981	NM_016824	120	Hs.501012	NM_001121	HPRD:03339	ADD3	ADDL	adducin 3 (gamma)	protein-coding
19-PTNLD28-TUMOR_peak_61228	chr20	42848597	42848729	+	7.07467	NA	intron (NR_038337, intron 2 of 2)	intron (NR_038337, intron 2 of 2)	8937	NR_038337	100505783	Hs.159049	NR_038337	ENSG00000223891	OSER1-AS1	-	OSER1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_2640	chr1	39679292	39679391	+	7.07467	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	129502	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_81936	chr5	126113303	126113540	+	7.07450	NA	exon (NM_005573, exon 1 of 11)	exon (NM_005573, exon 1 of 11)	576	NM_001198557	4001	Hs.89497	NM_005573	HPRD:01036	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding
19-PTNLD28-TUMOR_peak_41795	chr17	43296397	43296527	+	7.06850	NA	Intergenic	Intergenic	-2830	NM_005892	752	Hs.100217	NM_005892	HPRD:06876	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_92512	chr7	49887445	49887613	+	7.06850	NA	intron (NM_198570, intron 3 of 3)	MER74A|LTR|ERVL	74272	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_7056	chr1	154307656	154307775	+	7.06850	NA	intron (NM_001005855, intron 11 of 11)	intron (NM_001005855, intron 11 of 11)	7439	NM_020452	57198	Hs.435700	NM_020452	HPRD:05794	ATP8B2	ATPID	ATPase, aminophospholipid transporter, class I, type 8B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_8911	chr1	186601447	186601575	+	7.06850	NA	Intergenic	MLT2B2|LTR|ERVL	48048	NM_000963	5743	Hs.196384	NM_000963	HPRD:02599	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
19-PTNLD28-TUMOR_peak_101617	chr8	144397321	144397423	+	7.06850	NA	intron (NM_001258447, intron 12 of 13)	LTR13|LTR|ERVK	19689	NM_052963	116447	Hs.528574	NM_052963	HPRD:16214	TOP1MT	-	topoisomerase (DNA) I, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_24790	chr12	58015669	58015914	+	7.06850	NA	promoter-TSS (NR_120450)	promoter-TSS (NR_120450)	-105	NR_120450	101927583	Hs.624788	NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
19-PTNLD28-TUMOR_peak_30197	chr14	50490459	50490666	+	7.06850	NA	intron (NR_102736, intron 3 of 5)	intron (NR_102736, intron 3 of 5)	16040	NR_102736	100506499	Hs.728904	NR_102736		LOC100506499	-	uncharacterized LOC100506499	ncRNA
19-PTNLD28-TUMOR_peak_70808	chr3	130586652	130586918	+	7.06850	NA	intron (NM_001199182, intron 1 of 26)	SVA_D|Other|Other	17416	NM_001199180	27032	Hs.584884	NM_014382	HPRD:05089	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase, Ca++ transporting, type 2C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_1395	chr1	22642392	22642536	+	7.06850	NA	Intergenic	Intergenic	-135880	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_51969	chr2	30889490	30889671	+	7.06850	NA	Intergenic	MER57C2|LTR|ERV1	140731	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_12915	chr10	35104713	35104906	+	7.06784	NA	promoter-TSS (NM_001184789)	promoter-TSS (NM_001184789)	113	NR_108043	100505601	Hs.549790	NR_108043		PARD3-AS1	-	PARD3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72756	chr3	183979667	183979894	+	7.06784	NA	promoter-TSS (NM_033259)	promoter-TSS (NM_033259)	-529	NM_033259	94032	Hs.585003	NM_033259	HPRD:16377	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_16433	chr11	87346	87496	+	7.06784	NA	Intergenic	Intergenic	44499	NR_028326	100133161	Hs.645398	NR_028326		LINC01001	-	long intergenic non-protein coding RNA 1001	ncRNA
19-PTNLD28-TUMOR_peak_81169	chr5	92956611	92956729	+	7.06784	NA	promoter-TSS (NR_031754)	promoter-TSS (NR_031754)	-176	NR_031754	100313887		NR_031754	miRBase:MI0011284	MIR2277	-	microRNA 2277	ncRNA
19-PTNLD28-TUMOR_peak_79714	chr5	43065983	43066152	+	7.06712	NA	non-coding (NR_034127, exon 1 of 1)	non-coding (NR_034127, exon 1 of 1)	1006	NR_034127	100132356	Hs.726831	NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
19-PTNLD28-TUMOR_peak_7720	chr1	161695746	161696089	+	7.06288	NA	intron (NM_001288830, intron 3 of 4)	CpG	3474	NM_001288829	127943	Hs.517422	NM_001002901	HPRD:08093	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FcRY	Fc receptor-like B	protein-coding
19-PTNLD28-TUMOR_peak_39951	chr17	7145127	7145273	+	7.06288	NA	intron (NM_007278, intron 1 of 3)	intron (NM_007278, intron 1 of 3)	553	NM_007278	11337	Hs.647421	NM_007278		GABARAP	ATG8A|GABARAP-a|MM46	GABA(A) receptor-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_78760	chr5	6712190	6712692	+	7.06201	NA	Intergenic	CpG	-2277	NM_006999	11044	Hs.481542	NM_006999	HPRD:09239	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	PAP associated domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_54102	chr2	91777763	91777859	+	7.06201	NA	Intergenic	CpG	70164	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_6358	chr1	145944397	145944954	+	7.05733	NA	intron (NR_111936, intron 1 of 9).2	CpG	802	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_43923	chr17	78962846	78963061	+	7.05733	NA	Intergenic	Intergenic	-2688	NM_024591	79643	Hs.514560	NM_024591	HPRD:08564	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
19-PTNLD28-TUMOR_peak_23169	chr12	13348821	13348916	+	7.05733	NA	promoter-TSS (NM_001423)	promoter-TSS (NM_001423)	-734	NM_001423	2012	Hs.719042	NM_001423	HPRD:11892	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63703	chr21	43204189	43204301	+	7.05733	NA	Intergenic	Intergenic	-16996	NM_020639	54101	Hs.517310	NM_020639	HPRD:10419	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_6474	chr1	147486108	147486665	+	7.05733	NA	intron (NR_111936, intron 1 of 9)	CpG	802	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_94392	chr7	100803049	100803143	+	7.05733	NA	TTS (NR_039797)	TTS (NR_039797)	342	NR_039797	100616117		NR_039797		MIR4653	-	microRNA 4653	ncRNA
19-PTNLD28-TUMOR_peak_105192	chr9	110124260	110124413	+	7.05648	NA	Intergenic	L2c|LINE|L2	77286	NM_001244713	5887	Hs.521640	NM_002874	HPRD:06772	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_4255	chr1	68402804	68403096	+	7.05648	NA	intron (NR_040077, intron 1 of 9)	MLT2B5|LTR|ERVL	-103795	NM_018841	55970	Hs.431101	NM_018841	HPRD:13592	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
19-PTNLD28-TUMOR_peak_104423	chr9	91307981	91308095	+	7.05648	NA	Intergenic	MER5A|DNA|hAT-Charlie	-40963	NM_001100111	286238	Hs.434185	NM_001100111		LOC286238	-	uncharacterized LOC286238	protein-coding
19-PTNLD28-TUMOR_peak_56368	chr2	153468413	153468594	+	7.05648	NA	intron (NM_052905, intron 11 of 25)	intron (NM_052905, intron 11 of 25)	105472	NM_017892	55660	Hs.643580	NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_97890	chr8	28142864	28143031	+	7.05648	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-31702	NM_006228	5368	Hs.88218	NM_006228	HPRD:03268	PNOC	PPNOC	prepronociceptin	protein-coding
19-PTNLD28-TUMOR_peak_60292	chr20	25096764	25096852	+	7.05648	NA	Intergenic	LTR16A1|LTR|ERVL	31821	NR_027093	284798	Hs.334934	NR_027091	ENSG00000230725	LOC284798	-	uncharacterized LOC284798	ncRNA
19-PTNLD28-TUMOR_peak_77028	chr4	129135043	129135157	+	7.05648	NA	Intergenic	L1PA2|LINE|L1	74884	NM_006320	10424	Hs.507910	NM_006320	HPRD:09665	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
19-PTNLD28-TUMOR_peak_67863	chr3	45521284	45521495	+	7.05648	NA	intron (NM_015340, intron 10 of 21)	intron (NM_015340, intron 10 of 21)	29648	NR_048543	100885795	Hs.641094	NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103721	chr9	72489330	72489751	+	7.05648	NA	intron (NM_001010940, intron 4 of 5)	intron (NM_001010940, intron 4 of 5)	53809	NM_001010940	138255	Hs.444459	NM_001010940	HPRD:17298	C9orf135	-	chromosome 9 open reading frame 135	protein-coding
19-PTNLD28-TUMOR_peak_92482	chr7	48157751	48158201	+	7.05648	NA	Intergenic	Intergenic	29125	NM_001287430	7378	Hs.488240	NM_003364	HPRD:08932	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
19-PTNLD28-TUMOR_peak_56176	chr2	147740246	147740341	+	7.05648	NA	Intergenic	AluJr|SINE|Alu	395668	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_47873	chr19	17284342	17284571	+	7.05648	NA	intron (NM_001130065, intron 13 of 39)	intron (NM_001130065, intron 13 of 39)	-41699	NM_018467	55850	Hs.16187	NM_018467	HPRD:11299	USE1	P31|SLT1	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_67902	chr3	45980401	45980657	+	7.05648	NA	intron (NM_024513, intron 14 of 17)	intron (NM_024513, intron 14 of 17)	-4444	NM_006564	10663	Hs.34526	NM_006564	HPRD:05520	CXCR6	BONZO|CD186|STRL33|TYMSTR	chemokine (C-X-C motif) receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_91575	chr7	22589846	22590091	+	7.05648	NA	Intergenic	Intergenic	-12988	NR_038393	100506178	Hs.668122	NR_038393	ENSG00000232759	LOC100506178	-	uncharacterized LOC100506178	ncRNA
19-PTNLD28-TUMOR_peak_74211	chr4	6944007	6944197	+	7.05648	NA	intron (NM_001113361, intron 2 of 13)	intron (NM_001113361, intron 2 of 13)	32607	NM_020773	57533	Hs.518611	NM_020773	HPRD:11623	TBC1D14	-	TBC1 domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_30695	chr14	62305568	62305734	+	7.05648	NA	Intergenic	Intergenic	76576	NM_003082	6617	Hs.179312	NM_003082	HPRD:08998	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex, polypeptide 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_55963	chr2	137136476	137136571	+	7.05648	NA	Intergenic	Intergenic	-260798	NM_003467	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_65124	chr22	31545115	31545234	+	7.05648	NA	Intergenic	Intergenic	-8581	NM_015715	50487	Hs.149623	NM_015715	HPRD:07144	PLA2G3	GIII-SPLA2|SPLA2III|sPLA2-III	phospholipase A2, group III	protein-coding
19-PTNLD28-TUMOR_peak_71114	chr3	136768535	136768783	+	7.05648	NA	Intergenic	LTR16A2|LTR|ERVL	91952	NM_144717	53833	Hs.61232	NM_144717	HPRD:14594	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_69659	chr3	108881314	108881616	+	7.05648	NA	Intergenic	Intergenic	-15547	NR_026767	677779	Hs.618669	NM_001040054	ENSG00000214381	LINC00488	C3orf66	long intergenic non-protein coding RNA 488	ncRNA
19-PTNLD28-TUMOR_peak_92222	chr7	43774668	43774766	+	7.05648	NA	Intergenic	LTR13A|LTR|ERVK	-5577	NM_018224	55744	Hs.654779	NM_018224	HPRD:07700	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_13872	chr10	64378816	64378925	+	7.05648	NA	intron (NM_199452, intron 1 of 6)	intron (NM_199452, intron 1 of 6)	98663	NM_199452	22891	Hs.22653	NM_014951	HPRD:06380	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
19-PTNLD28-TUMOR_peak_15452	chr10	105644511	105644662	+	7.05648	NA	intron (NM_024928, intron 9 of 9)	intron (NM_024928, intron 9 of 9)	-29422	NM_014631	9644	Hs.678727	NM_014631	HPRD:10228	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
19-PTNLD28-TUMOR_peak_8178	chr1	171775051	171775169	+	7.05648	NA	Intergenic	Intergenic	24349	NM_001007239	51603	Hs.494705	NM_014955	HPRD:13821	METTL13	5630401D24Rik|KIAA0859|feat	methyltransferase like 13	protein-coding
19-PTNLD28-TUMOR_peak_50083	chr19	52164385	52164475	+	7.05648	NA	Intergenic	Intergenic	-14298	NM_001098612	100049587	Hs.707374	NM_001098612	ENSG00000254415	SIGLEC14	-	sialic acid binding Ig-like lectin 14	protein-coding
19-PTNLD28-TUMOR_peak_106724	chr9	139022729	139022838	+	7.05648	NA	Intergenic	L2b|LINE|L2	-12052	NM_152833	90120	Hs.287411	NM_152833	ENSG00000238227	C9orf69	bA83N9.1	chromosome 9 open reading frame 69	protein-coding
19-PTNLD28-TUMOR_peak_16363	chr10	134789057	134789301	+	7.05648	NA	non-coding (NR_046231, exon 3 of 3)	non-coding (NR_046231, exon 3 of 3)	10141	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LINC01168	-	long intergenic non-protein coding RNA 1168	ncRNA
19-PTNLD28-TUMOR_peak_86838	chr6	33384995	33385112	+	7.05563	NA	TTS (NM_024165)	TTS (NM_024165)	1012	NM_001014837	51596	Hs.520070	NM_015921	HPRD:12902	CUTA	ACHAP|C6orf82	cutA divalent cation tolerance homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_101517	chr8	143227722	143227833	+	7.05535	NA	Intergenic	Intergenic	-29923	NR_039682	100616268		NR_039682	miRBase:MI0016823	MIR4472-1	-	microRNA 4472-1	ncRNA
19-PTNLD28-TUMOR_peak_40376	chr17	17349509	17349788	+	7.05535	NA	Intergenic	Intergenic	-30652	NM_018019	55090	Hs.244595	NM_018019	HPRD:14383	MED9	MED25	mediator complex subunit 9	protein-coding
19-PTNLD28-TUMOR_peak_44745	chr18	14877058	14877149	+	7.05535	NA	Intergenic	Intergenic	46938	NR_036153	100422907		NR_036153		MIR3156-2	-	microRNA 3156-2	ncRNA
19-PTNLD28-TUMOR_peak_103454	chr9	66861504	66861600	+	7.05535	NA	Intergenic	CER|Satellite|Satellite	-61415	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_4815	chr1	90685040	90685323	+	7.05535	NA	Intergenic	L1PA3|LINE|L1	224503	NM_182976	284695	Hs.306221	NM_181781	HPRD:15774	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
19-PTNLD28-TUMOR_peak_44268	chr18	2223988	2224084	+	7.05535	NA	Intergenic	Intergenic	347453	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_62282	chr20	56048443	56048539	+	7.05535	NA	Intergenic	Intergenic	51432	NM_001269041	140690	Hs.131543	NM_080618	HPRD:09512	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor (zinc finger protein)-like	protein-coding
19-PTNLD28-TUMOR_peak_26021	chr12	106507590	106507690	+	7.05535	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	26171	NM_014840	9891	Hs.524692	NM_014840	HPRD:12171	NUAK1	ARK5	NUAK family, SNF1-like kinase, 1	protein-coding
19-PTNLD28-TUMOR_peak_15026	chr10	97326235	97326338	+	7.05535	NA	Intergenic	Intergenic	-5109	NM_001290294	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53946	chr2	87749220	87749341	+	7.05535	NA	Intergenic	L1ME1|LINE|L1	-5694	NR_024204	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
19-PTNLD28-TUMOR_peak_58018	chr2	206812875	206813021	+	7.05535	NA	Intergenic	Intergenic	137958	NM_017759	54891	Hs.445036	NM_017759	HPRD:07894	INO80D	-	INO80 complex subunit D	protein-coding
19-PTNLD28-TUMOR_peak_55199	chr2	118380859	118381128	+	7.05043	NA	Intergenic	L1PA3|LINE|L1	-191262	NM_006773	8886	Hs.744922	NM_006773	HPRD:05894	DDX18	MrDb	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
19-PTNLD28-TUMOR_peak_1140	chr1	17288356	17288474	+	7.05043	NA	intron (NM_014675, intron 27 of 36)	intron (NM_014675, intron 27 of 36)	18758	NM_001135248	4237	Hs.389137	NM_002403	HPRD:01137	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_77774	chr4	156874375	156874547	+	7.05043	NA	intron (NM_001334, intron 1 of 7)	intron (NM_001334, intron 1 of 7)	587	NM_001334	1519	Hs.75262	NM_001334	HPRD:02772	CTSO	CTSO1	cathepsin O	protein-coding
19-PTNLD28-TUMOR_peak_39704	chr17	2414783	2414960	+	7.05043	NA	intron (NM_024086, intron 1 of 9)	intron (NM_024086, intron 1 of 9)	329	NM_024086	79066	Hs.632237	NM_024086	HPRD:14556	METTL16	METT10D	methyltransferase like 16	protein-coding
19-PTNLD28-TUMOR_peak_106769	chr9	139622512	139622844	+	7.05043	NA	promoter-TSS (NR_003672)	promoter-TSS (NR_003672)	-42	NR_003672	84973	Hs.495480	NR_003672	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_21836	chr11	123946910	123947064	+	7.05043	NA	Intergenic	MER52D|LTR|ERV1	-37279	NM_001004463	390265	Hs.553761	NM_001004463	HPRD:14890	OR10G7	OR11-283	olfactory receptor, family 10, subfamily G, member 7	protein-coding
19-PTNLD28-TUMOR_peak_9560	chr1	204700233	204700474	+	7.05043	NA	Intergenic	Intergenic	-45756	NM_201630	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_48087	chr19	18707599	18707772	+	7.05043	NA	intron (NM_004750, intron 5 of 8)	G-rich|Low_complexity|Low_complexity	8190	NM_001100418	55049	Hs.655317	NM_017967	HPRD:07948	C19orf60	-	chromosome 19 open reading frame 60	protein-coding
19-PTNLD28-TUMOR_peak_75076	chr4	41320959	41321158	+	7.05043	NA	Intergenic	Intergenic	-40566	NM_001289124	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_53506	chr2	73963980	73964158	+	7.04770	NA	intron (NM_016058, intron 1 of 4)	intron (NM_016058, intron 1 of 4)	448	NM_016058	51002	Hs.157401	NM_016058	ENSG00000144034	TPRKB	-	TP53RK binding protein	protein-coding
19-PTNLD28-TUMOR_peak_46416	chr18	77444932	77445025	+	7.04770	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	3548	NM_001202504	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_27218	chr12	131709406	131709816	+	7.04770	NA	Intergenic	L1ME5|LINE|L1	60055	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_97221	chr8	12312963	12313151	+	7.04770	NA	intron (NR_040092, intron 4 of 5)	intron (NR_040092, intron 4 of 5)	18535	NR_040092	100506990	Hs.656893	NR_040091		LOC100506990	-	uncharacterized LOC100506990	ncRNA
19-PTNLD28-TUMOR_peak_89879	chr6	148651217	148651420	+	7.04770	NA	Intergenic	Intergenic	-12411	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_960	chr1	15273528	15273697	+	7.04770	NA	intron (NM_001017999, intron 1 of 7)	intron (NM_001017999, intron 1 of 7)	1197	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_95773	chr7	139358050	139358287	+	7.04770	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	119525	NM_022740	28996	Hs.731417	NM_022740	HPRD:06039	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_100961	chr8	131276140	131276318	+	7.04770	NA	intron (NM_018482, intron 3 of 29)	MIRc|SINE|MIR	32550	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_22228	chr11	130965282	130965378	+	7.04770	NA	Intergenic	Intergenic	-178948	NM_001301089	399979	Hs.444024	NM_014758	HPRD:18621	SNX19	CHET8	sorting nexin 19	protein-coding
19-PTNLD28-TUMOR_peak_9838	chr1	208138185	208138307	+	7.04770	NA	Intergenic	Intergenic	-53563	NM_001773	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
19-PTNLD28-TUMOR_peak_35859	chr16	2911027	2911115	+	7.04770	NA	Intergenic	Intergenic	-2900	NM_022119	64063	Hs.459709	NM_022119	HPRD:08336	PRSS22	BSSP-4|hBSSP-4	protease, serine, 22	protein-coding
19-PTNLD28-TUMOR_peak_94501	chr7	102036927	102037132	+	7.04770	NA	intron (NM_024653, intron 1 of 5)	intron (NM_024653, intron 1 of 5)	225	NM_024653	79706	Hs.722104	NM_024653	HPRD:11460	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1 (IL11 inducible)	protein-coding
19-PTNLD28-TUMOR_peak_7256	chr1	155990275	155990439	+	7.04335	NA	intron (NM_003145, intron 1 of 5)	intron (NM_003145, intron 1 of 5)	401	NM_003145	6746	Hs.74564	NM_003145	HPRD:02923	SSR2	TLAP|TRAP-BETA|TRAPB	signal sequence receptor, beta (translocon-associated protein beta)	protein-coding
19-PTNLD28-TUMOR_peak_52329	chr2	42190672	42191323	+	7.04227	NA	Intergenic	Intergenic	-10054	NM_001242815	400950	Hs.738713	NM_001242815	ENSG00000205086	C2orf91	-	chromosome 2 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_43308	chr17	72375699	72375792	+	7.04227	NA	Intergenic	Intergenic	12100	NM_181790	350383	Hs.574368	NM_181790	HPRD:16424	GPR142	PGR2	G protein-coupled receptor 142	protein-coding
19-PTNLD28-TUMOR_peak_64278	chr22	18578296	18578495	+	7.04227	NA	Intergenic	Intergenic	-15058	NM_018943	51807	Hs.137400	NM_018943	HPRD:05763	TUBA8	TUBAL2	tubulin, alpha 8	protein-coding
19-PTNLD28-TUMOR_peak_58473	chr2	220083672	220083819	+	7.04040	NA	promoter-TSS (NM_005689)	promoter-TSS (NM_005689)	-33	NM_005689	10058	Hs.107911	NM_005689	HPRD:09261	ABCB6	ABC|ABC14|DUH3|LAN|MCOPCB7|MTABC3|PRP|umat	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding
19-PTNLD28-TUMOR_peak_50577	chr19	58920629	58920750	+	7.04040	NA	intron (NM_173548, intron 1 of 3)	intron (NM_173548, intron 1 of 3)	626	NM_173548	201514	Hs.439551	NM_173548	HPRD:15861	ZNF584	-	zinc finger protein 584	protein-coding
19-PTNLD28-TUMOR_peak_22163	chr11	130188818	130188924	+	7.03492	NA	Intergenic	L2|LINE|L2	-4264	NM_001301098	29068	Hs.721470	NM_014155	HPRD:13692	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
19-PTNLD28-TUMOR_peak_97816	chr8	27184217	27184405	+	7.03492	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	1230	NM_173175	2185	Hs.491322	NM_004103	HPRD:03131	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_75222	chr4	49202424	49202520	+	7.03492	NA	Intergenic	Intergenic	213813	NM_001286791	80157	Hs.479703	NM_025087	HPRD:08638	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_82763	chr5	141158439	141158631	+	7.03492	NA	Intergenic	L2a|LINE|L2	87232	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_7945	chr1	166871572	166871843	+	7.03492	NA	Intergenic	Intergenic	-26053	NM_053053	117143	Hs.435967	NM_053053	HPRD:18114	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
19-PTNLD28-TUMOR_peak_88127	chr6	56688939	56689207	+	7.02991	NA	intron (NM_001144769, intron 4 of 96)	SVA_D|Other|Other	19390	NM_183380	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_38175	chr16	63016501	63016593	+	7.02991	NA	Intergenic	HERVH-int|LTR|ERV1	-945808	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_102293	chr9	16243873	16244208	+	7.02991	NA	intron (NR_073471, intron 1 of 3)	intron (NR_073471, intron 1 of 3)	9065	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_63671	chr21	43052245	43052346	+	7.02991	NA	Intergenic	Intergenic	-47167	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
19-PTNLD28-TUMOR_peak_66215	chr3	3742344	3742488	+	7.02991	NA	Intergenic	Intergenic	-98705	NM_020873	57633	Hs.163244	NM_020873	HPRD:14320	LRRN1	FIGLER3|NLRR-1	leucine rich repeat neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_51227	chr2	12906514	12906868	+	7.02991	NA	Intergenic	Intergenic	29198	NR_036072	100422986		NR_036072		MIR3125	-	microRNA 3125	ncRNA
19-PTNLD28-TUMOR_peak_105352	chr9	112665947	112666046	+	7.02991	NA	intron (NM_001037293, intron 4 of 6)	intron (NM_001037293, intron 4 of 6)	123419	NM_007203	445815	Hs.591908	NM_007203	HPRD:09197	PALM2-AKAP2	AKAP2	PALM2-AKAP2 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_24390	chr12	53133880	53134048	+	7.02991	NA	Intergenic	L3|LINE|CR1	-36717	NM_175078	374454	Hs.334989	NM_175078	HPRD:13934	KRT77	K1B|KRT1B	keratin 77	protein-coding
19-PTNLD28-TUMOR_peak_29152	chr13	113807284	113807387	+	7.02991	NA	Intergenic	CpG	-5633	NM_003891	8858	Hs.1011	NM_003891	HPRD:07182	PROZ	PZ	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_31841	chr14	94857165	94857334	+	7.02991	NA	promoter-TSS (NM_001127704)	promoter-TSS (NM_001127704)	-220	NM_001127706	5265	Hs.525557	NM_000295	HPRD:02463	SERPINA1	A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1	protein-coding
19-PTNLD28-TUMOR_peak_12056	chr10	12562787	12562921	+	7.02991	NA	intron (NM_020397, intron 1 of 9)	SVA_D|Other|Other	-57898	NR_039700	100616151		NR_039700		MIR4480	-	microRNA 4480	ncRNA
19-PTNLD28-TUMOR_peak_107995	chrX	40277772	40277874	+	7.02991	NA	Intergenic	Intergenic	155653	NR_110386	101927476	Hs.522607	NR_110386	ENSG00000236393	LOC101927476	-	uncharacterized LOC101927476	ncRNA
19-PTNLD28-TUMOR_peak_55585	chr2	128666637	128666739	+	7.02991	NA	Intergenic	MIRb|SINE|MIR	-23174	NM_001199140	83607	Hs.546449	NM_031445	HPRD:14625	AMMECR1L	-	AMMECR1-like	protein-coding
19-PTNLD28-TUMOR_peak_27352	chr13	20702263	20702377	+	7.02991	NA	Intergenic	CpG	32863	NM_021954	2700	Hs.130313	NM_021954	HPRD:00415	GJA3	CTRCT14|CX46|CZP3	gap junction protein, alpha 3, 46kDa	protein-coding
19-PTNLD28-TUMOR_peak_8706	chr1	182922209	182922328	+	7.02991	NA	exon (NM_030933, exon 1 of 10)	exon (NM_030933, exon 1 of 10)	285	NM_030933	81626	Hs.497034	NM_030933	HPRD:16634	SHCBP1L	C1orf14|GE36	SHC SH2-domain binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_65975	chr22	46474478	46474849	+	7.02991	NA	Intergenic	Intergenic	-7214	NR_027033	400931	Hs.235838	NM_207477	HPRD:16929	MIRLET7BHG	linc-Ppara	MIRLET7B host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_36626	chr16	19427392	19427491	+	7.02991	NA	intron (NM_001105249, intron 1 of 20)	AluJo|SINE|Alu	-1577	NM_001261841	79838	Hs.115838	NM_024780	HPRD:15516	TMC5	-	transmembrane channel-like 5	protein-coding
19-PTNLD28-TUMOR_peak_76664	chr4	113770544	113770677	+	7.02991	NA	intron (NM_001127493, intron 1 of 46)	intron (NM_001127493, intron 1 of 46)	31371	NM_001127493	287	Hs.620557	NM_001148	HPRD:00110	ANK2	ANK-2|LQT4|brank-2	ankyrin 2, neuronal	protein-coding
19-PTNLD28-TUMOR_peak_42496	chr17	55655627	55655773	+	7.02991	NA	intron (NM_138962, intron 7 of 13)	intron (NM_138962, intron 7 of 13)	30073	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_21349	chr11	115630483	115631074	+	7.02991	NA	non-coding (NR_034148, exon 1 of 3)	non-coding (NR_034148, exon 1 of 3)	140	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_46757	chr19	3821339	3821439	+	7.02991	NA	exon (NM_015174, exon 10 of 19)	exon (NM_015174, exon 10 of 19)	-19579	NM_002378	4145	Hs.631845	NM_002378	HPRD:02496	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_35319	chr15	93414262	93414352	+	7.02991	NA	Intergenic	AluSx|SINE|Alu	-11766	NR_037600	100507217	Hs.622504	NR_037600	ENSG00000272888	LOC100507217	-	uncharacterized LOC100507217	ncRNA
19-PTNLD28-TUMOR_peak_98169	chr8	37237767	37237865	+	7.02991	NA	Intergenic	Intergenic	113615	NR_121620	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_40540	chr17	19135659	19135762	+	7.02957	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4980	NM_014964	22905	Hs.743983	NM_014964	HPRD:06271	EPN2	EHB21	epsin 2	protein-coding
19-PTNLD28-TUMOR_peak_38233	chr16	66545579	66545866	+	7.02369	NA	non-coding (NR_073520, exon 9 of 9)	non-coding (NR_073520, exon 9 of 9)	-35417	NR_109960	101927726	Hs.739193	NR_109960		BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_265	chr1	2718287	2718448	+	7.02132	NA	Intergenic	Intergenic	-12137	NM_001242672	100287898	Hs.632363	NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
19-PTNLD28-TUMOR_peak_55670	chr2	130692731	130692875	+	7.02132	NA	promoter-TSS (NR_026740)	promoter-TSS (NR_026740)	-913	NR_026740	389033	Hs.380682	NR_026740	ENSG00000214100	LOC389033	-	placenta-specific 9 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64328	chr22	19159609	19159734	+	7.02132	NA	non-coding (NR_103767, exon 1 of 1)	non-coding (NR_103767, exon 1 of 1)	452	NR_103767	100652736	Hs.572896	NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
19-PTNLD28-TUMOR_peak_98151	chr8	36896692	36897004	+	7.02132	NA	Intergenic	MER94|DNA|hAT-Blackjack	255006	NM_001031836	157855	Hs.13861	NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3	potassium channel, subfamily U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_937	chr1	14630844	14631032	+	7.02132	NA	Intergenic	Intergenic	-294275	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_48143	chr19	19325892	19326002	+	7.02132	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	3165	NM_004386	1463	Hs.169047	NM_004386	HPRD:02897	NCAN	CSPG3	neurocan	protein-coding
19-PTNLD28-TUMOR_peak_24996	chr12	65002796	65002973	+	7.02132	NA	Intergenic	Intergenic	-1409	NR_040718	283349	Hs.643605	NM_178169	HPRD:08448	RASSF3	RASSF5	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_106062	chr9	127597499	127597667	+	7.02132	NA	Intergenic	Intergenic	-18113	NM_001276374	401551	Hs.343383	NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
19-PTNLD28-TUMOR_peak_109340	chrX	119695454	119695602	+	7.02132	NA	promoter-TSS (NM_001079872)	promoter-TSS (NM_001079872)	-711	NM_001079872	8450	Hs.102914	NM_003588	HPRD:02251	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
19-PTNLD28-TUMOR_peak_25762	chr12	98896897	98897003	+	7.02132	NA	intron (NR_038383, intron 1 of 3)	intron (NR_038383, intron 1 of 3)	683	NR_038383	643770	Hs.129589	NR_038383	ENSG00000245017	LOC643770	-	uncharacterized LOC643770	ncRNA
19-PTNLD28-TUMOR_peak_105583	chr9	117077577	117077675	+	7.02132	NA	Intergenic	Intergenic	-7677	NM_000607	5004	Hs.522356	NM_000607	HPRD:00724	ORM1	AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
19-PTNLD28-TUMOR_peak_2661	chr1	39980912	39981065	+	7.02132	NA	intron (NM_181809, intron 3 of 6)	CpG	23670	NM_181809	353500	Hs.472497	NM_181809		BMP8A	-	bone morphogenetic protein 8a	protein-coding
19-PTNLD28-TUMOR_peak_27982	chr13	41885938	41886038	+	7.02132	NA	intron (NM_001110798, intron 1 of 10)	CpG	647	NM_001110798	79612	Hs.512914	NM_018527	HPRD:07977	NAA16	NARG1L	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_37705	chr16	49547111	49547199	+	7.02132	NA	intron (NM_015069, intron 7 of 7)	intron (NM_015069, intron 7 of 7)	139347	NM_144602	123970	Hs.125875	NM_144602	HPRD:14560	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_61647	chr20	47803470	47803909	+	7.02098	NA	intron (NM_001037328, intron 1 of 13)	intron (NM_001037328, intron 1 of 13)	1215	NM_017453	6780	Hs.596704	NM_004602	HPRD:03422	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_93504	chr7	76128930	76129022	+	7.02098	NA	intron (NM_001102594, intron 6 of 10)	intron (NM_001102594, intron 6 of 10)	-10764	NM_182684	80761	Hs.488861	NM_030570	HPRD:15626	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
19-PTNLD28-TUMOR_peak_36842	chr16	23464021	23464388	+	7.02068	NA	exon (NM_153603, exon 1 of 17)	exon (NM_153603, exon 1 of 17)	308	NM_153603	91949	Hs.185807	NM_153603	HPRD:07373	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
19-PTNLD28-TUMOR_peak_29596	chr14	24785841	24786003	+	7.02068	NA	3' UTR (NM_181657, exon 2 of 2)	3' UTR (NM_181657, exon 2 of 2)	3609	NM_181657	1241	Hs.567248	NM_181657	HPRD:03320	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
19-PTNLD28-TUMOR_peak_55526	chr2	127729620	127729867	+	7.02068	NA	Intergenic	CpG	135160	NM_139343	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_16966	chr11	8376219	8376522	+	7.02068	NA	Intergenic	Intergenic	-86188	NM_001270428	4004	Hs.654426	NM_002315	HPRD:01738	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1 (rhombotin 1)	protein-coding
19-PTNLD28-TUMOR_peak_16874	chr11	6495028	6495214	+	7.02068	NA	promoter-TSS (NM_006458)	promoter-TSS (NM_006458)	93	NM_006458	10612	Hs.591992	NM_006458	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
19-PTNLD28-TUMOR_peak_70286	chr3	123985484	123985609	+	7.02068	NA	intron (NM_001024660, intron 4 of 59)	intron (NM_001024660, intron 4 of 59)	-107633	NR_106731	102464832		NR_106731		MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
19-PTNLD28-TUMOR_peak_60229	chr20	23858903	23859031	+	7.02068	NA	intron (NM_001900, intron 1 of 2)	intron (NM_001900, intron 1 of 2)	1413	NM_001900	1473	Hs.121489	NM_001900	HPRD:00463	CST5	-	cystatin D	protein-coding
19-PTNLD28-TUMOR_peak_14842	chr10	91174741	91175160	+	7.02051	NA	intron (NM_012420, intron 1 of 1)	CpG	625	NM_012420	24138	Hs.252839	NM_012420	HPRD:17130	IFIT5	P58|RI58	interferon-induced protein with tetratricopeptide repeats 5	protein-coding
19-PTNLD28-TUMOR_peak_46004	chr18	57287859	57288024	+	7.02051	NA	intron (NM_133459, intron 2 of 10)	THE1B|LTR|ERVL-MaLR	76703	NM_133459	147372	Hs.34333	NM_133459	HPRD:08703	CCBE1	-	collagen and calcium binding EGF domains 1	protein-coding
19-PTNLD28-TUMOR_peak_51991	chr2	31360981	31361076	+	7.02051	NA	non-coding (NR_045602, exon 1 of 16)	non-coding (NR_045602, exon 1 of 16)	564	NR_045602	79623	Hs.468058	NM_024572	HPRD:12194	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
19-PTNLD28-TUMOR_peak_91001	chr7	3952130	3952248	+	7.02051	NA	intron (NM_152744, intron 5 of 44)	intron (NM_152744, intron 5 of 44)	-217128	NM_001079653	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_74945	chr4	37979505	37979612	+	7.02051	NA	intron (NM_001253912, intron 2 of 20)	CpG	17502	NM_006607	10744	Hs.668806	NM_006607	HPRD:09176	PTTG2	-	pituitary tumor-transforming 2	protein-coding
19-PTNLD28-TUMOR_peak_87571	chr6	43237346	43237630	+	7.01894	NA	intron (NM_032538, intron 13 of 14)	CpG	26266	NM_032538	84630	Hs.485436	NM_032538	HPRD:11653	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_83114	chr5	148941054	148941169	+	7.01894	NA	Intergenic	Intergenic	-9996	NM_001892	1452	Hs.529862	NM_001892	HPRD:02739	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_19223	chr11	64900851	64900982	+	7.01456	NA	intron (NM_172230, intron 2 of 15)	intron (NM_172230, intron 2 of 15)	1087	NM_032431	84447	Hs.75859	NM_032431	HPRD:07618	SYVN1	DER3|HRD1	synovial apoptosis inhibitor 1, synoviolin	protein-coding
19-PTNLD28-TUMOR_peak_96170	chr7	148680553	148680655	+	7.01456	NA	Intergenic	Intergenic	45178	NM_004911	9601	Hs.93659	NM_004911	HPRD:06501	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_14959	chr10	95221691	95221787	+	7.01420	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	20335	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_83847	chr5	169931050	169931203	+	7.01258	NA	promoter-TSS (NM_001278339)	promoter-TSS (NM_001278339)	86	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68585	chr3	58153768	58153902	+	7.01258	NA	intron (NM_001457, intron 43 of 45)	intron (NM_001457, intron 43 of 45)	42895	NM_004944	1776	Hs.476453	NM_004944	HPRD:03764	DNASE1L3	DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease I-like 3	protein-coding
19-PTNLD28-TUMOR_peak_80277	chr5	65058179	65058343	+	7.01190	NA	intron (NM_020726, intron 2 of 12)	AluJb|SINE|Alu	40238	NM_020726	57486	Hs.247460	NM_020726	HPRD:07495	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin (metallopeptidase M3 family)	protein-coding
19-PTNLD28-TUMOR_peak_47084	chr19	8747846	8748032	+	7.01190	NA	Intergenic	MIR|SINE|MIR	61241	NM_178525	284382	Hs.209206	NM_178525	HPRD:14562	ACTL9	-	actin-like 9	protein-coding
19-PTNLD28-TUMOR_peak_26335	chr12	111995147	111995459	+	7.01190	NA	intron (NM_002973, intron 1 of 24)	MIRb|SINE|MIR	42177	NM_002973	6311	Hs.76253	NM_002973	HPRD:03307	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
19-PTNLD28-TUMOR_peak_2082	chr1	32281595	32281709	+	7.01190	NA	promoter-TSS (NM_001281988)	promoter-TSS (NM_001281988)	0	NM_001281987	90853	Hs.62604	NM_144569	HPRD:08057	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30913	chr14	68571274	68571438	+	7.01190	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	284860	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_17177	chr11	11761705	11761843	+	7.01190	NA	Intergenic	Intergenic	42995	NR_107037	102465870		NR_107037		MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
19-PTNLD28-TUMOR_peak_60145	chr20	21663266	21663573	+	7.01190	NA	intron (NR_109878, intron 1 of 4)	intron (NR_109878, intron 1 of 4)	20804	NR_109878	101929608	Hs.694665	NR_109878		LOC101929608	-	uncharacterized LOC101929608	ncRNA
19-PTNLD28-TUMOR_peak_80041	chr5	57075356	57075548	+	7.01190	NA	Intergenic	Intergenic	119537	NR_109900	101928539	Hs.639385	NR_109900	ENSG00000249584	LOC101928539	-	uncharacterized LOC101928539	ncRNA
19-PTNLD28-TUMOR_peak_90641	chr6	170019892	170020108	+	7.01190	NA	intron (NM_182552, intron 21 of 25)	MER4E1|LTR|ERV1	82159	NM_182552	253769	Hs.131903	NM_182552	HPRD:11352	WDR27	-	WD repeat domain 27	protein-coding
19-PTNLD28-TUMOR_peak_107419	chrX	3631669	3631854	+	7.01190	NA	promoter-TSS (NM_005044)	promoter-TSS (NM_005044)	-86	NM_005044	5613	Hs.390788	NM_005044	HPRD:02097	PRKX	PKX1	protein kinase, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_35032	chr15	85977148	85977262	+	7.01190	NA	intron (NM_007200, intron 1 of 36)	L1PA2|LINE|L1	53358	NM_006738	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_84827	chr6	2868496	2868594	+	7.01190	NA	intron (NR_033851, intron 1 of 1)	AluYc|SINE|Alu	8199	NR_033851	221756	Hs.8162	NM_182544		SERPINB9P1	SERPINB9P	serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_100303	chr8	119647438	119647548	+	7.01190	NA	intron (NR_038210, intron 2 of 4)	intron (NR_038210, intron 2 of 4)	-13259	NR_109794	401474	Hs.359393	NM_207506	HPRD:15293	SAMD12	-	sterile alpha motif domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_24157	chr12	50172060	50172158	+	7.01190	NA	Intergenic	L2|LINE|L2	36517	NM_001098576	7009	Hs.743965	NM_003217	HPRD:02851	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
19-PTNLD28-TUMOR_peak_58151	chr2	210654925	210655077	+	7.01190	NA	intron (NM_182587, intron 6 of 62)	intron (NM_182587, intron 6 of 62)	18284	NM_032504	285175	Hs.396201	NM_032504	HPRD:12809	UNC80	C2orf21|UNC-80	unc-80 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_64655	chr22	23226218	23226362	+	7.01190	NA	Intergenic	Intergenic	-3670	NM_001256296	100423062	Hs.449585	NM_001178126	ENSG00000254709	IGLL5	-	immunoglobulin lambda-like polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_90549	chr6	168108453	168108623	+	7.01190	NA	Intergenic	Intergenic	-24071	NR_117092	441178	Hs.628956	NM_001025489		LOC441178	-	uncharacterized LOC441178	ncRNA
19-PTNLD28-TUMOR_peak_38157	chr16	59553416	59553525	+	7.01190	NA	Intergenic	HERVH-int|LTR|ERV1	235625	NR_028471	644649	Hs.250392	NR_028471		APOOP5	-	apolipoprotein O pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_49641	chr19	48293787	48293934	+	7.01190	NA	Intergenic	Intergenic	12018	NM_003009	6415	Hs.631549	NM_003009	HPRD:08377	SEPW1	selW	selenoprotein W, 1	protein-coding
19-PTNLD28-TUMOR_peak_60222	chr20	23673916	23674051	+	7.01190	NA	Intergenic	Intergenic	-4321	NM_001899	1472	Hs.654549	NM_001899	HPRD:00462	CST4	-	cystatin S	protein-coding
19-PTNLD28-TUMOR_peak_49208	chr19	42498360	42498497	+	7.01190	NA	promoter-TSS (NM_152296)	promoter-TSS (NM_152296)	0	NM_001256214	478	Hs.515427	NM_152296	HPRD:01666	ATP1A3	AHC2|DYT12|RDP	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_31802	chr14	94014928	94015150	+	7.01190	NA	intron (NM_020818, intron 14 of 49)	MER31-int|LTR|ERV1	201502	NM_182971	341947	Hs.666459	NM_182971	HPRD:13090	COX8C	COX8-3	cytochrome c oxidase subunit VIIIC	protein-coding
19-PTNLD28-TUMOR_peak_88121	chr6	56580086	56580191	+	7.01190	NA	intron (NM_183380, intron 2 of 93)	intron (NM_183380, intron 2 of 93)	35000	NR_046940	100873774		NR_046940	ENSG00000207203	RNU6-71P	RNU6-71	RNA, U6 small nuclear 71, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_88711	chr6	89964362	89964467	+	7.01190	NA	Intergenic	Intergenic	-23407	NM_001267582	2569	Hs.99927	NM_002042	HPRD:15921	GABRR1	-	gamma-aminobutyric acid (GABA) A receptor, rho 1	protein-coding
19-PTNLD28-TUMOR_peak_9910	chr1	210502176	210502479	+	7.01190	NA	promoter-TSS (NM_001170587)	promoter-TSS (NM_001170587)	77	NM_001170588	55733	Hs.58650	NM_018194	HPRD:12041	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_38729	chr16	75098552	75098823	+	7.01190	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	51983	NM_194436	197257	Hs.380929	NM_153486	HPRD:06318	LDHD	DLD	lactate dehydrogenase D	protein-coding
19-PTNLD28-TUMOR_peak_20172	chr11	76510399	76510514	+	7.01190	NA	Intergenic	CpG	16171	NM_015516	25987	Hs.8361	NM_015516	HPRD:12152	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19-PTNLD28-TUMOR_peak_62294	chr20	56126191	56126291	+	7.01190	NA	Intergenic	Intergenic	-9896	NM_002591	5105	Hs.1872	NM_002591	HPRD:02028	PCK1	PEPCK-C|PEPCK1|PEPCKC	phosphoenolpyruvate carboxykinase 1 (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_8051	chr1	168323912	168324078	+	7.01190	NA	Intergenic	L1PA2|LINE|L1	-20767	NR_030284	693142		NR_030284	miRBase:MI0003563	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
19-PTNLD28-TUMOR_peak_63207	chr21	34143642	34143837	+	7.01186	NA	promoter-TSS (NR_024623)	promoter-TSS (NR_024623)	430	NR_027873	94104	Hs.644004	NM_013329	HPRD:10761	PAXBP1	BM020|C21orf66|FSAP105|GCFC|GCFC1	PAX3 and PAX7 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_84484	chr5	179160286	179160436	+	7.01041	NA	exon (NM_014757, exon 1 of 5)	exon (NM_014757, exon 1 of 5)	510	NM_014757	9794	Hs.631951	NM_014757	HPRD:05665	MAML1	Mam-1|Mam1	mastermind-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_10474	chr1	226252047	226252173	+	7.01041	NA	non-coding (NR_002315, exon 2 of 4)	non-coding (NR_002315, exon 2 of 4)	1682	NR_002315	440926	Hs.533624	NR_002315	ENSG00000235655	H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_36927	chr16	24862060	24862148	+	7.00675	NA	intron (NM_001258413, intron 2 of 15)	intron (NM_001258413, intron 2 of 15)	4552	NM_052944	115584	Hs.164118	NM_052944	ENSG00000158865	SLC5A11	KST1|RKST1|SGLT6|SMIT2	solute carrier family 5 (sodium/inositol cotransporter), member 11	protein-coding
19-PTNLD28-TUMOR_peak_54162	chr2	92315791	92315883	+	7.00183	NA	Intergenic	ALR/Alpha|Satellite|centr	186678	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_88446	chr6	79787569	79787661	+	7.00178	NA	exon (NM_017934, exon 2 of 40)	exon (NM_017934, exon 2 of 40)	396	NM_017934	55023	Hs.511817	NM_017934	HPRD:10152	PHIP	BRWD2|DCAF14|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_102981	chr9	37422207	37422395	+	7.00178	NA	promoter-TSS (NM_012203)	promoter-TSS (NM_012203)	-406	NM_012203	9380	Hs.155742	NM_012203	HPRD:05052	GRHPR	GLXR|GLYD|PH2	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
19-PTNLD28-TUMOR_peak_60835	chr20	35464709	35464886	+	7.00178	NA	intron (NM_080627, intron 2 of 14)	AluSx|SINE|Alu	23479	NM_199181	140710	Hs.460807	NM_080627	HPRD:11116	SOGA1	C20orf117|KIAA0889|SOGA	suppressor of glucose, autophagy associated 1	protein-coding
19-PTNLD28-TUMOR_peak_83893	chr5	170854972	170855183	+	7.00178	NA	intron (NM_003862, intron 2 of 4)	MIR|SINE|MIR	8410	NM_003862	8817	Hs.87191	NM_003862	HPRD:04766	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
19-PTNLD28-TUMOR_peak_72468	chr3	176916798	176916984	+	7.00073	NA	Intergenic	Intergenic	-1843	NM_024665	79718	Hs.715026	NM_024665	HPRD:15476	TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_6139	chr1	143745462	143745553	+	6.99885	NA	promoter-TSS (NR_027468)	promoter-TSS (NR_027468)	-988	NR_027468	388685	Hs.713362	NM_207400		LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
19-PTNLD28-TUMOR_peak_32531	chr15	22487440	22487580	+	6.99818	NA	Intergenic	Intergenic	-59055	NR_033735	646396	Hs.451294	NR_033735		REREP3	-	arginine-glutamic acid dipeptide (RE) repeats pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_79538	chr5	37370934	37371053	+	6.99420	NA	exon (NM_153485, exon 1 of 35)	exon (NM_153485, exon 1 of 35)	235	NM_004298	9631	Hs.547696	NM_004298	HPRD:05984	NUP155	ATFB15|N155	nucleoporin 155kDa	protein-coding
19-PTNLD28-TUMOR_peak_851	chr1	12609634	12609738	+	6.99420	NA	Intergenic	Intergenic	29365	NR_106788	102466722		NR_106788		MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
19-PTNLD28-TUMOR_peak_82344	chr5	135363879	135363972	+	6.99374	NA	promoter-TSS (NM_000358)	promoter-TSS (NM_000358)	-659	NM_000358	7045	Hs.369397	NM_000358	HPRD:03409	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor, beta-induced, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_74318	chr4	8178671	8178843	+	6.99374	NA	Intergenic	Intergenic	-18198	NM_001130088	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_64538	chr22	21633931	21634024	+	6.99374	NA	Intergenic	Intergenic	-2737	NR_024583	29797	Hs.396963	NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin-like 8 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109903	chrX	153010719	153010876	+	6.99357	NA	TTS (NM_000033)	TTS (NM_000033)	-18854	NM_005393	5365	Hs.632833	NM_005393	HPRD:02198	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
19-PTNLD28-TUMOR_peak_71398	chr3	141998980	141999083	+	6.99357	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-54582	NM_001039547	256356	Hs.135904	NM_152776	HPRD:14612	GK5	-	glycerol kinase 5 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_109975	chrX	153640363	153640511	+	6.99326	NA	promoter-TSS (NM_001009933)	promoter-TSS (NM_001009933)	-10	NM_001009934	1774	Hs.401929	NM_006730	HPRD:02096	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease I-like 1	protein-coding
19-PTNLD28-TUMOR_peak_103010	chr9	37840246	37840403	+	6.99174	NA	intron (NM_024345, intron 2 of 6)	Tigger3b|DNA|TcMar-Tigger	39541	NM_024345	79269	Hs.118394	NM_024345	HPRD:08319	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
19-PTNLD28-TUMOR_peak_100729	chr8	127081137	127081391	+	6.99174	NA	Intergenic	LTR16A2|LTR|ERVL	-117823	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_33680	chr15	57025273	57025443	+	6.99174	NA	intron (NM_001002843, intron 1 of 20)	CpG	926	NM_017661	54816	Hs.511477	NM_017661	HPRD:15448	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
19-PTNLD28-TUMOR_peak_24582	chr12	54943179	54943477	+	6.99174	NA	promoter-TSS (NM_001288769)	promoter-TSS (NM_001288769)	151	NM_001288768	5153	Hs.530871	NM_000924	HPRD:01388	PDE1B	PDE1B1|PDES1B	phosphodiesterase 1B, calmodulin-dependent	protein-coding
19-PTNLD28-TUMOR_peak_18959	chr11	62093455	62093714	+	6.99174	NA	Intergenic	LTR2B|LTR|ERV1	-11190	NM_025080	80150	Hs.535326	NM_025080	HPRD:07006	ASRGL1	ALP|ALP1|CRASH	asparaginase like 1	protein-coding
19-PTNLD28-TUMOR_peak_26485	chr12	116980427	116980681	+	6.99174	NA	Intergenic	Intergenic	9314	NR_027346	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
19-PTNLD28-TUMOR_peak_60341	chr20	26038034	26038242	+	6.99174	NA	intron (NR_026713, intron 1 of 4)	SST1|Satellite|centr	2888	NR_026713	284800	Hs.516956	NM_182583	HPRD:08240	FAM182A	C20orf91|bB329D4.1	family with sequence similarity 182, member A	ncRNA
19-PTNLD28-TUMOR_peak_60257	chr20	24631867	24632087	+	6.99174	NA	intron (NM_024893, intron 3 of 3)	MamSINE1|SINE|tRNA	182142	NM_024893	79953	Hs.124638	NM_024893	HPRD:12766	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
19-PTNLD28-TUMOR_peak_24603	chr12	55480885	55481185	+	6.99174	NA	Intergenic	L1PA3|LINE|L1	-42518	NM_001005243	441639	Hs.553827	NM_001005243	HPRD:15090	OR9K2	OR12-2	olfactory receptor, family 9, subfamily K, member 2	protein-coding
19-PTNLD28-TUMOR_peak_32480	chr15	21001193	21001330	+	6.99174	NA	Intergenic	Intergenic	-39781	NR_027992	606	Hs.657985	NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_89581	chr6	136389169	136389391	+	6.99174	NA	intron (NM_018945, intron 2 of 12)	MER4D1|LTR|ERV1	182169	NM_138419	113115	Hs.121536	NM_138419	HPRD:16884	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_54249	chr2	96436604	96436927	+	6.99174	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	55964	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
19-PTNLD28-TUMOR_peak_40168	chr17	9706152	9706275	+	6.99174	NA	Intergenic	MIR|SINE|MIR	-11599	NM_001220493	201140	Hs.61684	NM_001105571	ENSG00000184544	DHRS7C	SDR32C2	dehydrogenase/reductase (SDR family) member 7C	protein-coding
19-PTNLD28-TUMOR_peak_6307	chr1	145421741	145421916	+	6.99174	NA	intron (NM_001039703, intron 68 of 85)	intron (NM_001039703, intron 68 of 85)	8637	NM_145277	148738	Hs.632436	NM_145277	HPRD:10521	HFE2	HFE2A|HJV|JH|RGMC	hemochromatosis type 2 (juvenile)	protein-coding
19-PTNLD28-TUMOR_peak_87943	chr6	52377167	52377278	+	6.99174	NA	intron (NM_012288, intron 4 of 10)	intron (NM_012288, intron 4 of 10)	64640	NM_012288	9697	Hs.520182	NM_012288	HPRD:16338	TRAM2	-	translocation associated membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_66025	chr22	47127379	47127562	+	6.99174	NA	intron (NM_022766, intron 1 of 12)	L1MDa|LINE|L1	6682	NM_022766	64781	Hs.200668	NM_022766	HPRD:09878	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
19-PTNLD28-TUMOR_peak_10076	chr1	218550637	218550911	+	6.99174	NA	intron (NM_001135599, intron 2 of 7)	intron (NM_001135599, intron 2 of 7)	-31754	NR_046268	728463	Hs.568469	NR_046268	ENSG00000232480	TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_17609	chr11	19984377	19984614	+	6.99174	NA	intron (NM_182964, intron 10 of 37)	intron (NM_182964, intron 10 of 37)	-59607	NM_001111019	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_39468	chr16	89575434	89575549	+	6.99168	NA	intron (NM_003119, intron 1 of 16)	intron (NM_003119, intron 1 of 16)	695	NM_199367	6687	Hs.185597	NM_003119	HPRD:04149	SPG7	CAR|CMAR|PGN|SPG5C	spastic paraplegia 7 (pure and complicated autosomal recessive)	protein-coding
19-PTNLD28-TUMOR_peak_33933	chr15	63768514	63768625	+	6.99076	NA	Intergenic	Intergenic	-28141	NR_046341	9960	Hs.458499	NM_006537		USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_16804	chr11	4414470	4414570	+	6.99076	NA	intron (NM_003141, intron 1 of 6)	intron (NM_003141, intron 1 of 6)	406	NM_003141	6737	Hs.532357	NM_003141	HPRD:00170	TRIM21	RNF81|RO52|Ro/SSA|SSA|SSA1	tripartite motif containing 21	protein-coding
19-PTNLD28-TUMOR_peak_48961	chr19	39465862	39466264	+	6.99076	NA	intron (NR_104026, intron 1 of 5)	CpG	390	NM_024907	115290	Hs.531770	NM_024907	HPRD:16436	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
19-PTNLD28-TUMOR_peak_48678	chr19	35932461	35932659	+	6.99076	NA	Intergenic	Intergenic	-8057	NM_005306	2867	Hs.248056	NM_005306	HPRD:04824	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_44699	chr18	13260557	13260718	+	6.99076	NA	intron (NM_181482, intron 1 of 5)	intron (NM_181482, intron 1 of 5)	-17467	NM_181481	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_44007	chr17	79690811	79691017	+	6.99076	NA	Intergenic	L1M4|LINE|L1	11648	NM_001270953	1468	Hs.548187	NM_012140	HPRD:08424	SLC25A10	DIC	solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_84013	chr5	172277353	172277453	+	6.99076	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	16180	NM_001031711	57222	Hs.509163	NM_020462	HPRD:13836	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
19-PTNLD28-TUMOR_peak_88080	chr6	54712709	54712864	+	6.99076	NA	intron (NM_001010872, intron 1 of 4)	intron (NM_001010872, intron 1 of 4)	1217	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_6219	chr1	144683423	144683520	+	6.99076	NA	intron (NM_001037675, intron 7 of 20)	intron (NM_001037675, intron 7 of 20)	-3446	NR_037182	653513	Hs.632434	NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
19-PTNLD28-TUMOR_peak_13497	chr10	49515028	49515166	+	6.99044	NA	intron (NM_001278547, intron 1 of 11)	CpG	415	NM_001278547	5599	Hs.138211	NM_002750	HPRD:03100	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_87658	chr6	44043003	44043118	+	6.98853	NA	Intergenic	Intergenic	52131	NM_032111	64928	Hs.311190	NM_032111	HPRD:14741	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
19-PTNLD28-TUMOR_peak_248	chr1	2479580	2479752	+	6.98853	NA	Intergenic	Intergenic	-8138	NM_001297605	8764	Hs.512898	NM_003820	HPRD:04122	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	tumor necrosis factor receptor superfamily, member 14	protein-coding
19-PTNLD28-TUMOR_peak_21368	chr11	116290912	116291015	+	6.98825	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	352751	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_61994	chr20	51560152	51560245	+	6.98825	NA	Intergenic	Intergenic	-28748	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_346	chr1	6188126	6188230	+	6.98825	NA	exon (NM_015557, exon 25 of 42)	exon (NM_015557, exon 25 of 42)	52016	NM_015557	26038	Hs.522898	NM_015557	HPRD:10828	CHD5	CHD-5	chromodomain helicase DNA binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_109339	chrX	119695054	119695281	+	6.98825	NA	promoter-TSS (NM_001079872)	promoter-TSS (NM_001079872)	-350	NM_001079872	8450	Hs.102914	NM_003588	HPRD:02251	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
19-PTNLD28-TUMOR_peak_32154	chr14	103143260	103143349	+	6.98825	NA	intron (NM_015156, intron 2 of 11)	SVA_F|Other|Other	84308	NM_015156	23186	Hs.510521	NM_015156	HPRD:09645	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
19-PTNLD28-TUMOR_peak_25764	chr12	98897670	98897777	+	6.98825	NA	promoter-TSS (NR_038383)	promoter-TSS (NR_038383)	-90	NR_038383	643770	Hs.129589	NR_038383	ENSG00000245017	LOC643770	-	uncharacterized LOC643770	ncRNA
19-PTNLD28-TUMOR_peak_75551	chr4	66864731	66864901	+	6.98825	NA	Intergenic	L1PA2|LINE|L1	-328603	NM_001281767	2044	Hs.654492	NM_004439	HPRD:02474	EPHA5	CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4	EPH receptor A5	protein-coding
19-PTNLD28-TUMOR_peak_92867	chr7	64601584	64601672	+	6.98825	NA	intron (NR_038378, intron 9 of 9)	CpG	102896	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_53915	chr2	87034693	87035219	+	6.98825	NA	intron (NM_001145873, intron 1 of 8)	intron (NM_001145873, intron 1 of 8)	563	NM_001145873	925	Hs.85258	NM_001768	HPRD:01737	CD8A	CD8|Leu2|MAL|p32	CD8a molecule	protein-coding
19-PTNLD28-TUMOR_peak_73491	chr3	195386141	195386253	+	6.98759	NA	intron (NR_003265, intron 1 of 14)	intron (NR_003265, intron 1 of 14)	1287	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_90311	chr6	159239123	159239415	+	6.98280	NA	promoter-TSS (NM_003379)	promoter-TSS (NM_003379)	71	NM_003379	7430	Hs.487027	NM_003379	HPRD:00475	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
19-PTNLD28-TUMOR_peak_86686	chr6	31926335	31926539	+	6.98280	NA	promoter-TSS (NM_006929)	promoter-TSS (NM_006929)	-144	NM_006929	6499	Hs.89864	NM_006929	HPRD:02724	SKIV2L	170A|DDX13|HLP|SKI2|SKI2W|SKIV2|THES2	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_97430	chr8	19578103	19578207	+	6.98280	NA	Intergenic	Intergenic	-37894	NR_024040	55790	Hs.613729	NM_018371	HPRD:13114	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_16504	chr11	707235	707438	+	6.98255	NA	intron (NM_022772, intron 1 of 20)	intron (NM_022772, intron 1 of 20)	1216	NM_022772	64787	Hs.55016	NM_022772	HPRD:10940	EPS8L2	EPS8R2	EPS8-like 2	protein-coding
19-PTNLD28-TUMOR_peak_50364	chr19	55865156	55865584	+	6.98025	NA	TTS (NM_001145402)	TTS (NM_001145402)	812	NM_144613	125965	Hs.550544	NM_144613	HPRD:13088	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit VIb polypeptide 2 (testis)	protein-coding
19-PTNLD28-TUMOR_peak_4967	chr1	94312143	94312297	+	6.97655	NA	promoter-TSS (NR_030621)	promoter-TSS (NR_030621)	-168	NR_030621	100126348		NR_030621	miRBase:MI0005567	MIR760	MIRN760|hsa-mir-760	microRNA 760	ncRNA
19-PTNLD28-TUMOR_peak_59428	chr20	1306431	1306621	+	6.97574	NA	promoter-TSS (NM_001199784)	promoter-TSS (NM_001199784)	-13	NM_001199784	27111	Hs.657015	NM_015685	HPRD:18032	SDCBP2	SITAC|SITAC18|ST-2	syndecan binding protein (syntenin) 2	protein-coding
19-PTNLD28-TUMOR_peak_23139	chr12	13052835	13052923	+	6.97574	NA	intron (NM_003979, intron 1 of 3)	intron (NM_003979, intron 1 of 3)	8923	NM_003979	9052	Hs.631733	NM_003979		GPRC5A	GPCR5A|RAI3|RAIG1	G protein-coupled receptor, class C, group 5, member A	protein-coding
19-PTNLD28-TUMOR_peak_39696	chr17	2300249	2300418	+	6.97472	NA	intron (NM_020310, intron 1 of 5)	intron (NM_020310, intron 1 of 5)	3925	NM_020310	4335	Hs.626579	NM_020310	HPRD:04331	MNT	MAD6|MXD6|ROX|bHLHd3	MAX network transcriptional repressor	protein-coding
19-PTNLD28-TUMOR_peak_356	chr1	6306909	6307010	+	6.96998	NA	TTS (NM_207370)	TTS (NM_207370)	2707	NM_001024598	390992	Hs.532677	NM_001024598	HPRD:18618	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_56583	chr2	160761062	160761194	+	6.96998	NA	exon (NM_001198760, exon 1 of 38)	exon (NM_001198760, exon 1 of 38)	139	NM_001198760	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_90144	chr6	155054721	155055060	+	6.96998	NA	5' UTR (NM_014892, exon 1 of 20)	5' UTR (NM_014892, exon 1 of 20)	378	NM_014892	22828	Hs.591329	NM_014892	HPRD:11487	SCAF8	RBM16	SR-related CTD-associated factor 8	protein-coding
19-PTNLD28-TUMOR_peak_62113	chr20	52825367	52825502	+	6.96998	NA	intron (NM_002623, intron 1 of 3)	MIRb|SINE|MIR	932	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_87032	chr6	35564473	35564563	+	6.96998	NA	intron (NM_001145775, intron 7 of 11)	intron (NM_001145775, intron 7 of 11)	68048	NR_049873	100847048		NR_049873	miRBase:MI0019295	MIR5690	-	microRNA 5690	ncRNA
19-PTNLD28-TUMOR_peak_14158	chr10	72647584	72647748	+	6.96998	NA	5' UTR (NM_001289797, exon 1 of 4)	5' UTR (NM_001289797, exon 1 of 4)	345	NM_001289797	5092	Hs.3192	NM_000281	HPRD:00523	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_73884	chr4	2073304	2073558	+	6.96781	NA	TTS (NM_181808)	TTS (NM_181808)	12192	NM_178557	339983	Hs.318529	NM_178557	HPRD:08224	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8-like (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_17205	chr11	12101776	12101912	+	6.96781	NA	Intergenic	Intergenic	-30279	NM_014632	9645	Hs.501928	NM_014632	HPRD:10085	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_74522	chr4	11150740	11150854	+	6.96741	NA	Intergenic	L1PA3|LINE|L1	-219654	NR_030298	693157		NR_030298	miRBase:MI0003579	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
19-PTNLD28-TUMOR_peak_68400	chr3	53309747	53309898	+	6.96741	NA	Intergenic	Intergenic	-19692	NR_047580	7086	Hs.89643	NM_001064	HPRD:06001	TKT	HEL107|TK|TKT1	transketolase	protein-coding
19-PTNLD28-TUMOR_peak_63046	chr21	30107198	30107387	+	6.96741	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	150403	NR_047510	29104	Hs.163846	NM_013240		N6AMT1	C21orf127|HEMK2|MTQ2|N6AMT|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_16591	chr11	1643779	1643924	+	6.96741	NA	promoter-TSS (NM_001012709)	promoter-TSS (NM_001012709)	-483	NM_001012709	387267	Hs.539087	NM_001012709	HPRD:12396	KRTAP5-4	KRTAP5.4	keratin associated protein 5-4	protein-coding
19-PTNLD28-TUMOR_peak_52886	chr2	56572723	56572863	+	6.96741	NA	intron (NM_001080433, intron 3 of 5)	intron (NM_001080433, intron 3 of 5)	-159888	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_34914	chr15	83876025	83876559	+	6.96741	NA	5' UTR (NM_016073, exon 1 of 6)	5' UTR (NM_016073, exon 1 of 6)	478	NM_016073	50810	Hs.513954	NM_016073	HPRD:17096	HDGFRP3	HDGF-2|HDGF2|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding
19-PTNLD28-TUMOR_peak_72655	chr3	182360526	182360679	+	6.96741	NA	Intergenic	Intergenic	-150689	NM_014616	23200	Hs.478429	NM_014616	HPRD:10432	ATP11B	ATPIF|ATPIR	ATPase, class VI, type 11B	protein-coding
19-PTNLD28-TUMOR_peak_40741	chr17	25878987	25879157	+	6.96741	NA	intron (NM_014238, intron 3 of 20)	L2a|LINE|L2	-79102	NR_024043	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	lectin, galactoside-binding, soluble, 9	protein-coding
19-PTNLD28-TUMOR_peak_10066	chr1	217251855	217251980	+	6.96741	NA	intron (NM_001134285, intron 1 of 8)	intron (NM_001134285, intron 1 of 8)	-1605	NM_001243507	2104	Hs.444225	NM_001438	HPRD:04274	ESRRG	ERR3|ERRgamma|NR3B3	estrogen-related receptor gamma	protein-coding
19-PTNLD28-TUMOR_peak_88542	chr6	83767589	83767697	+	6.96741	NA	exon (NM_198920, exon 2 of 10)	exon (NM_198920, exon 2 of 10)	7902	NM_198920	90025	Hs.148609	NM_198920	HPRD:12861	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
19-PTNLD28-TUMOR_peak_97240	chr8	12499540	12499652	+	6.96741	NA	intron (NR_047662, intron 2 of 8)	intron (NR_047662, intron 2 of 8)	23524	NR_047662	729732	Hs.322761	NR_047662		LOC729732	-	uncharacterized LOC729732	ncRNA
19-PTNLD28-TUMOR_peak_50909	chr2	8260082	8260201	+	6.96741	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-143196	NR_015405	339788	Hs.46864	NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
19-PTNLD28-TUMOR_peak_81501	chr5	110229969	110230230	+	6.96741	NA	Intergenic	LTR12C|LTR|ERV1	155345	NM_138773	91137	Hs.75639	NM_138773	HPRD:14283	SLC25A46	-	solute carrier family 25, member 46	protein-coding
19-PTNLD28-TUMOR_peak_55541	chr2	127897464	127897608	+	6.96741	NA	Intergenic	L1MEg|LINE|L1	-32633	NM_139344	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_33165	chr15	40566993	40567189	+	6.96741	NA	intron (NM_001128628, intron 10 of 10)	intron (NM_001128628, intron 10 of 10)	7696	NM_001190479	100131244	Hs.711376	NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
19-PTNLD28-TUMOR_peak_9338	chr1	202433483	202433579	+	6.96741	NA	intron (NM_032103, intron 1 of 11)	intron (NM_032103, intron 1 of 11)	1660	NM_032103	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_40455	chr17	18171856	18171963	+	6.96741	NA	Intergenic	Intergenic	7485	NM_148886	125170	Hs.655555	NM_139162	HPRD:18074	MIEF2	MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_2599	chr1	39281621	39282123	+	6.96741	NA	Intergenic	Intergenic	43623	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_71825	chr3	153777675	153777949	+	6.96741	NA	intron (NR_037901, intron 2 of 3)	intron (NR_037901, intron 2 of 3)	-60980	NM_001251962	26084	Hs.240845	NM_015595	HPRD:11554	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
19-PTNLD28-TUMOR_peak_52488	chr2	44826317	44826559	+	6.96741	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	-49779	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_91079	chr7	5490531	5490719	+	6.96734	NA	Intergenic	Intergenic	-27448	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_62303	chr20	56195494	56195743	+	6.96677	NA	promoter-TSS (NM_001160419)	promoter-TSS (NM_001160419)	14	NM_001160419	81030	Hs.302123	NM_030776	HPRD:09484	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82081	chr5	131596539	131596719	+	6.96677	NA	intron (NM_003687, intron 1 of 6)	intron (NM_003687, intron 1 of 6)	3278	NM_003687	8572	Hs.424312	NM_003687	HPRD:04571	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
19-PTNLD28-TUMOR_peak_30179	chr14	50360016	50360365	+	6.96367	NA	5' UTR (NM_001663, exon 2 of 2)	5' UTR (NM_001663, exon 2 of 2)	454	NM_001663	382	Hs.525330	NM_001663		ARF6	-	ADP-ribosylation factor 6	protein-coding
19-PTNLD28-TUMOR_peak_103749	chr9	72876122	72876294	+	6.96150	NA	intron (NM_015110, intron 1 of 24)	L2|LINE|L2	2330	NM_015110	23137	Hs.534189	NM_015110	HPRD:10241	SMC5	SMC5L1	structural maintenance of chromosomes 5	protein-coding
19-PTNLD28-TUMOR_peak_48147	chr19	19453562	19453751	+	6.96112	NA	exon (NM_015329, exon 9 of 19)	exon (NM_015329, exon 9 of 19)	22026	NM_015329	23383	Hs.654939	NM_015329	HPRD:11117	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
19-PTNLD28-TUMOR_peak_107080	chrUn_gl000217	107707	107828	+	6.96112	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_19880	chr11	72300935	72301024	+	6.96112	NA	exon (NM_001143839, exon 9 of 30)	exon (NM_001143839, exon 9 of 30)	25195	NR_029603	406931		NR_029603		MIR139	MIR139-3p|MIRN139	microRNA 139	ncRNA
19-PTNLD28-TUMOR_peak_9743	chr1	206643285	206643454	+	6.95991	NA	promoter-TSS (NM_014002)	promoter-TSS (NM_014002)	-217	NM_001193321	9641	Hs.321045	NM_014002	HPRD:05442	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	protein-coding
19-PTNLD28-TUMOR_peak_7462	chr1	158112281	158112430	+	6.95984	NA	Intergenic	MER70-int|LTR|ERVL	-1925	NR_033946	646268	Hs.506902	NR_033946	ENSG00000231666	LOC646268	-	hCG1654703	ncRNA
19-PTNLD28-TUMOR_peak_90923	chr7	2556804	2556975	+	6.95984	NA	promoter-TSS (NM_002304)	promoter-TSS (NM_002304)	-608	NM_002304	3955	Hs.159142	NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_23138	chr12	13052557	13052671	+	6.95807	NA	intron (NM_003979, intron 1 of 3)	MIRb|SINE|MIR	8658	NM_003979	9052	Hs.631733	NM_003979		GPRC5A	GPCR5A|RAI3|RAIG1	G protein-coupled receptor, class C, group 5, member A	protein-coding
19-PTNLD28-TUMOR_peak_18903	chr11	61539562	61539671	+	6.95807	NA	intron (NM_013279, intron 7 of 25)	intron (NM_013279, intron 7 of 25)	-14480	NR_026882	26070	Hs.564254	NR_026882	ENSG00000124915	DKFZP434K028	-	uncharacterized LOC26070	ncRNA
19-PTNLD28-TUMOR_peak_98819	chr8	55382672	55382842	+	6.95807	NA	Intergenic	CpG	12262	NM_022454	64321	Hs.98367	NM_022454	HPRD:18085	SOX17	VUR3	SRY (sex determining region Y)-box 17	protein-coding
19-PTNLD28-TUMOR_peak_76318	chr4	96112260	96112575	+	6.95488	NA	intron (NM_003728, intron 12 of 15)	intron (NM_003728, intron 12 of 15)	99775	NM_001256794	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_10926	chr1	233504343	233504451	+	6.95488	NA	intron (NM_032435, intron 5 of 9)	AluJb|SINE|Alu	40883	NM_032435	84451	Hs.547779	NM_032435	HPRD:10087	KIAA1804	MLK4|dJ862P8.3	mixed lineage kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_88965	chr6	107136221	107136346	+	6.95488	NA	Intergenic	MER20|DNA|hAT-Charlie	58842	NM_018292	55278	Hs.406917	NM_018292	HPRD:15199	QRSL1	GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_24541	chr12	54585491	54585592	+	6.95488	NA	Intergenic	Intergenic	-2763	NR_045039	23583	Hs.632721	NM_014311	HPRD:06376	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
19-PTNLD28-TUMOR_peak_106822	chr9	140071167	140071255	+	6.95488	NA	intron (NM_013366, intron 10 of 12)	MLT1C-int|LTR|ERVL-MaLR	-4713	NM_001282477	100505993	Hs.512463	NM_001282477		TMEM210	-	transmembrane protein 210	protein-coding
19-PTNLD28-TUMOR_peak_12081	chr10	13042927	13043381	+	6.95488	NA	intron (NM_001282658, intron 5 of 6)	CpG	550	NM_031455	83643	Hs.498720	NM_031455	HPRD:13008	CCDC3	-	coiled-coil domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_103649	chr9	70971049	70971152	+	6.95488	NA	promoter-TSS (NM_021965)	promoter-TSS (NM_021965)	-715	NM_021965	5239	Hs.307835	NM_021965	HPRD:02990	PGM5	PGMRP	phosphoglucomutase 5	protein-coding
19-PTNLD28-TUMOR_peak_59341	chr2	242834925	242835092	+	6.95488	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	11494	NR_110220	101927289	Hs.130180	NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
19-PTNLD28-TUMOR_peak_31744	chr14	92980041	92980242	+	6.95488	NA	promoter-TSS (NM_024832)	promoter-TSS (NM_024832)	16	NM_024832	79890	Hs.326822	NM_024832	HPRD:11494	RIN3	-	Ras and Rab interactor 3	protein-coding
19-PTNLD28-TUMOR_peak_9214	chr1	201390375	201390592	+	6.95488	NA	intron (NM_003281, intron 1 of 7)	intron (NM_003281, intron 1 of 7)	391	NM_003281	7135	Hs.320890	NM_003281	HPRD:01842	TNNI1	SSTNI|TNN1	troponin I type 1 (skeletal, slow)	protein-coding
19-PTNLD28-TUMOR_peak_88718	chr6	90081917	90082005	+	6.95488	NA	intron (NM_021244, intron 6 of 6)	intron (NM_021244, intron 6 of 6)	-19342	NM_016021	51465	Hs.163776	NM_016021	HPRD:15599	UBE2J1	HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p	ubiquitin-conjugating enzyme E2, J1	protein-coding
19-PTNLD28-TUMOR_peak_62776	chr21	15095674	15095857	+	6.95403	NA	promoter-TSS (NR_107036).3	promoter-TSS (NR_107036).3	-745	NR_107036	102466252		NR_107036		MIR8069-1	MIR8069|hsa-mir-8069	microRNA 8069-1	ncRNA
19-PTNLD28-TUMOR_peak_83483	chr5	156986368	156986562	+	6.95403	NA	intron (NM_033274, intron 3 of 22)	intron (NM_033274, intron 3 of 22)	16366	NM_033274	8728	Hs.483944	NM_023038	HPRD:04704	ADAM19	MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
19-PTNLD28-TUMOR_peak_36417	chr16	14415446	14415619	+	6.95403	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	12390	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_19447	chr11	66801273	66801449	+	6.95403	NA	intron (NM_001177880, intron 2 of 7)	intron (NM_001177880, intron 2 of 7)	10545	NM_177963	91683	Hs.287636	NM_177963		SYT12	SYT11|sytXII	synaptotagmin XII	protein-coding
19-PTNLD28-TUMOR_peak_45941	chr18	56006218	56006460	+	6.95403	NA	intron (NM_001144964, intron 13 of 30)	intron (NM_001144964, intron 13 of 30)	-111967	NR_029667	406906		NR_029667	miRBase:MI0000442	MIR122	MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A	microRNA 122	ncRNA
19-PTNLD28-TUMOR_peak_101073	chr8	133511737	133511932	+	6.95403	NA	Intergenic	Intergenic	-18830	NM_004519	3786	Hs.374023	NM_004519	HPRD:09077	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel, KQT-like subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_59510	chr20	2506382	2506518	+	6.95403	NA	Intergenic	MER41B|LTR|ERV1	-1282	NM_001282495	79175	Hs.516846	NM_024325	HPRD:18327	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
19-PTNLD28-TUMOR_peak_13732	chr10	60272496	60272912	+	6.95403	NA	promoter-TSS (NM_001080512)	promoter-TSS (NM_001080512)	-200	NM_001080512	80114	Hs.100261	NM_001080512	ENSG00000122870	BICC1	BICC|CYSRD	BicC family RNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_63959	chr21	45858458	45858609	+	6.95403	NA	intron (NR_038257, intron 29 of 31)	intron (NR_038257, intron 29 of 31)	-13087	NR_109964	101928607	Hs.666176	NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_91387	chr7	17025370	17025539	+	6.95403	NA	Intergenic	Intergenic	-103841	NM_176813	155465	Hs.100686	NM_176813	HPRD:16545	AGR3	AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3	protein-coding
19-PTNLD28-TUMOR_peak_87514	chr6	42629436	42629546	+	6.95403	NA	intron (NM_015255, intron 30 of 46)	intron (NM_015255, intron 30 of 46)	60867	NM_000322	5961	Hs.654489	NM_000322	HPRD:01553	PRPH2	AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2 (retinal degeneration, slow)	protein-coding
19-PTNLD28-TUMOR_peak_29029	chr13	110357685	110357896	+	6.95403	NA	Intergenic	Intergenic	-22831	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
19-PTNLD28-TUMOR_peak_71303	chr3	140578554	140578686	+	6.95403	NA	Intergenic	MIRb|SINE|MIR	-82042	NM_018155	55186	Hs.144130	NM_018155	HPRD:07688	SLC25A36	PNC2	solute carrier family 25 (pyrimidine nucleotide carrier ), member 36	protein-coding
19-PTNLD28-TUMOR_peak_7387	chr1	157076379	157076535	+	6.95403	NA	Intergenic	Intergenic	-6857	NM_001004341	440695	Hs.127138	NM_001004341	HPRD:13365	ETV3L	-	ets variant 3-like	protein-coding
19-PTNLD28-TUMOR_peak_103739	chr9	72698455	72698577	+	6.95403	NA	intron (NM_153267, intron 2 of 13)	intron (NM_153267, intron 2 of 13)	40019	NM_153267	256691	Hs.547172	NM_153267	HPRD:14353	MAMDC2	-	MAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_43305	chr17	72297431	72297529	+	6.95403	NA	intron (NM_023036, intron 8 of 13)	MER91B|DNA|hAT-Tip100	-24871	NM_153209	124602	Hs.372773	NM_153209	HPRD:08782	KIF19	KIF19A	kinesin family member 19	protein-coding
19-PTNLD28-TUMOR_peak_70324	chr3	124326119	124326267	+	6.95403	NA	intron (NM_007064, intron 1 of 26)	intron (NM_007064, intron 1 of 26)	22687	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_40471	chr17	18389582	18389780	+	6.95403	NA	intron (NM_001040078, intron 3 of 10)	intron (NM_001040078, intron 3 of 10)	9582	NM_001040078	654346	Hs.462402	NM_001040078	ENSG00000171916	LGALS9C	-	lectin, galactoside-binding, soluble, 9C	protein-coding
19-PTNLD28-TUMOR_peak_100911	chr8	130089550	130089816	+	6.95403	NA	Intergenic	Intergenic	163803	NR_033916	728724	Hs.49902	NR_033916	ENSG00000250400	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
19-PTNLD28-TUMOR_peak_96604	chr7	155088694	155088918	+	6.95341	NA	promoter-TSS (NM_198337)	promoter-TSS (NM_198337)	-680	NM_198337	3638	Hs.520819	NM_005542	HPRD:03633	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
19-PTNLD28-TUMOR_peak_8327	chr1	175165054	175165241	+	6.95085	NA	Intergenic	X7C_LINE|LINE|CR1	-2918	NM_001162894	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_80713	chr5	73937186	73937375	+	6.94678	NA	promoter-TSS (NM_001256574)	promoter-TSS (NM_001256574)	-31	NM_003633	8507	Hs.104925	NM_003633	HPRD:05529	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1 (with BTB domain)	protein-coding
19-PTNLD28-TUMOR_peak_70767	chr3	129817184	129817350	+	6.94676	NA	TTS (NM_001136152)	TTS (NM_001136152)	13009	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10441	chr1	225897008	225897154	+	6.94611	NA	Intergenic	Intergenic	-56236	NM_018212	55740	Hs.497893	NM_018212	HPRD:12360	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_66108	chr22	50731241	50731340	+	6.94611	NA	intron (NM_012401, intron 2 of 36)	intron (NM_012401, intron 2 of 36)	14711	NM_012401	23654	Hs.3989	NM_012401	HPRD:05050	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
19-PTNLD28-TUMOR_peak_48584	chr19	34625246	34625561	+	6.94611	NA	Intergenic	CpG	-37949	NM_015578	26065	Hs.744009	NM_015578	HPRD:12697	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, SCD6 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_10484	chr1	226315687	226315868	+	6.94611	NA	Intergenic	Intergenic	58646	NM_022735	64746	Hs.520207	NM_022735	HPRD:08432	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_34439	chr15	74219528	74219696	+	6.94611	NA	exon (NM_005576, exon 1 of 7)	exon (NM_005576, exon 1 of 7)	515	NR_040066	100287616	Hs.599785	NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88778	chr6	91185727	91185815	+	6.94611	NA	Intergenic	Intergenic	111249	NM_145333	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_7329	chr1	156569749	156569837	+	6.94602	NA	intron (NM_182679, intron 1 of 7)	intron (NM_182679, intron 1 of 7)	1486	NM_182679	54865	Hs.193832	NM_015590	HPRD:13596	GPATCH4	GPATC4	G patch domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_62642	chr20	62611410	62611634	+	6.94602	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	-527	NM_080621	140700	Hs.27189	NM_080621	HPRD:15292	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_97041	chr8	8243972	8244116	+	6.94602	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-4700	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_31245	chr14	74231737	74231873	+	6.94475	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-4804	NM_194278	91748	Hs.594157	NM_194278	HPRD:12648	ELMSAN1	C14orf117|C14orf43|LSR68|c14_5541	ELM2 and Myb/SANT-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_102021	chr9	4297786	4298094	+	6.94475	NA	intron (NM_001042413, intron 1 of 10)	CpG	2095	NM_001042413	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_41456	chr17	39775011	39775134	+	6.94475	NA	TTS (NM_000422)	TTS (NM_000422)	5810	NM_000422	3872	Hs.2785	NM_000422	HPRD:01019	KRT17	K17|PC|PC2|PCHC1	keratin 17	protein-coding
19-PTNLD28-TUMOR_peak_22436	chr12	1701879	1702018	+	6.94475	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	1383	NM_152441	144699	Hs.367956	NM_152441	HPRD:10949	FBXL14	Fbl14	F-box and leucine-rich repeat protein 14	protein-coding
19-PTNLD28-TUMOR_peak_61189	chr20	42281630	42281838	+	6.94475	NA	Intergenic	Intergenic	-13925	NM_002466	4605	Hs.179718	NM_002466	HPRD:03247	MYBL2	B-MYB|BMYB	v-myb avian myeloblastosis viral oncogene homolog-like 2	protein-coding
19-PTNLD28-TUMOR_peak_109973	chrX	153639694	153639934	+	6.94321	NA	promoter-TSS (NM_181311)	promoter-TSS (NM_181311)	-63	NM_181311	6901	Hs.409911	NM_000116	HPRD:02316	TAZ	BTHS|CMD3A|EFE|EFE2|G4.5|LVNCX|Taz1	tafazzin	protein-coding
19-PTNLD28-TUMOR_peak_106516	chr9	135059215	135059331	+	6.94080	NA	intron (NM_032536, intron 2 of 7)	intron (NM_032536, intron 2 of 7)	21939	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_5207	chr1	101701755	101702235	+	6.94080	NA	promoter-TSS (NM_001400)	promoter-TSS (NM_001400)	89	NR_104626	101928370	Hs.534209	NR_104626		LOC101928370	-	uncharacterized LOC101928370	ncRNA
19-PTNLD28-TUMOR_peak_32150	chr14	103057157	103057364	+	6.94080	NA	Intergenic	Intergenic	-1736	NM_015156	23186	Hs.510521	NM_015156	HPRD:09645	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
19-PTNLD28-TUMOR_peak_42215	chr17	48246535	48246623	+	6.94080	NA	exon (NM_000023, exon 6 of 10)	exon (NM_000023, exon 6 of 10)	3213	NM_001135697	6442	Hs.463412	NM_000023	HPRD:02525	SGCA	50-DAG|A2|ADL|DAG2|DMDA2|LGMD2D|SCARMD1|adhalin	sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_1740	chr1	27424022	27424110	+	6.94080	NA	Intergenic	Intergenic	57555	NR_046474	6548	Hs.91389	NM_003047	HPRD:00123	SLC9A1	APNH|NHE-1|NHE1|PPP1R143	solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_31038	chr14	69950692	69950820	+	6.94080	NA	promoter-TSS (NM_001161498)	promoter-TSS (NM_001161498)	-715	NM_001161498	400224	Hs.509796	NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding
19-PTNLD28-TUMOR_peak_48650	chr19	35626434	35626523	+	6.94080	NA	promoter-TSS (NM_139284)	promoter-TSS (NM_139284)	-300	NM_139284	163175	Hs.65256	NM_139284	HPRD:06433	LGI4	LGIL3	leucine-rich repeat LGI family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_4622	chr1	85931054	85931176	+	6.94080	NA	promoter-TSS (NM_012137)	promoter-TSS (NM_012137)	-226	NM_012137	23576	Hs.713411	NM_012137	HPRD:09203	DDAH1	DDAH|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_73556	chr3	195934301	195934411	+	6.94080	NA	exon (NM_001039617, exon 5 of 8)	exon (NM_001039617, exon 5 of 8)	3944	NM_001039617	131540	Hs.111591	NM_144637	HPRD:15714	ZDHHC19	DHHC19	zinc finger, DHHC-type containing 19	protein-coding
19-PTNLD28-TUMOR_peak_12433	chr10	24499140	24499266	+	6.93939	NA	intron (NM_001282767, intron 1 of 18)	intron (NM_001282767, intron 1 of 18)	1483	NM_001282768	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_24039	chr12	48294416	48294558	+	6.93939	NA	intron (NM_001017535, intron 1 of 10)	intron (NM_001017535, intron 1 of 10)	4327	NM_001017536	7421	Hs.524368	NM_000376	HPRD:03463	VDR	NR1I1|PPP1R163	vitamin D (1,25- dihydroxyvitamin D3) receptor	protein-coding
19-PTNLD28-TUMOR_peak_87236	chr6	37773633	37773788	+	6.93511	NA	Intergenic	Intergenic	-13597	NM_021943	60685	Hs.36959	NM_021943	HPRD:12121	ZFAND3	TEX27	zinc finger, AN1-type domain 3	protein-coding
19-PTNLD28-TUMOR_peak_82625	chr5	139725555	139725672	+	6.93511	NA	exon (NM_001945, exon 2 of 6)	exon (NM_001945, exon 2 of 6)	575	NM_001945	1839	Hs.799	NM_001945	HPRD:00526	HBEGF	DTR|DTS|DTSF|HEGFL	heparin-binding EGF-like growth factor	protein-coding
19-PTNLD28-TUMOR_peak_5599	chr1	113242959	113243315	+	6.93315	NA	TTS (NM_001042679)	TTS (NM_001042679)	6541	NM_001042679	389	Hs.502659	NM_175744	HPRD:01322	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
19-PTNLD28-TUMOR_peak_65084	chr22	30822481	30822825	+	6.93171	NA	intron (NM_001003704, intron 1 of 2)	MIRb|SINE|MIR	1042	NM_001003704	51537	Hs.713636	NM_016498	HPRD:17612	MTFP1	MTP18	mitochondrial fission process 1	protein-coding
19-PTNLD28-TUMOR_peak_74383	chr4	8857795	8857888	+	6.93160	NA	Intergenic	Intergenic	15702	NM_018942	3166	Hs.104134	NM_018942	HPRD:00873	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_94548	chr7	102278971	102279148	+	6.93160	NA	intron (NM_032959, intron 8 of 8)	intron (NM_032959, intron 8 of 8)	4179	NM_001114403	100134938	Hs.610255	NM_001114403	ENSG00000267368	UPK3BL	UPLP	uroplakin 3B-like	protein-coding
19-PTNLD28-TUMOR_peak_90743	chr7	552633	552822	+	6.93160	NA	intron (NM_033023, intron 2 of 5)	intron (NM_033023, intron 2 of 5)	6754	NM_002607	5154	Hs.535898	NM_002607	HPRD:01424	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_19711	chr11	69866491	69866646	+	6.93160	NA	Intergenic	Intergenic	43462	NR_120530	101928443	Hs.313468	NR_120529	ENSG00000248844	LOC101928443	-	uncharacterized LOC101928443	ncRNA
19-PTNLD28-TUMOR_peak_34294	chr15	70669448	70669656	+	6.93160	NA	Intergenic	Intergenic	-279296	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_52810	chr2	54684753	54685110	+	6.93160	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	1477	NM_003128	6711	Hs.503178	NM_003128	HPRD:01683	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_106443	chr9	133415362	133415479	+	6.93160	NA	Intergenic	Intergenic	39461	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	ncRNA
19-PTNLD28-TUMOR_peak_32499	chr15	21359506	21359629	+	6.92625	NA	Intergenic	REP522|Satellite|telo	213800	NR_040094	348120	Hs.116287	NR_040094	ENSG00000258710	LINC01193	CT60	long intergenic non-protein coding RNA 1193	ncRNA
19-PTNLD28-TUMOR_peak_47002	chr19	7965890	7966036	+	6.92625	NA	3' UTR (NM_025061, exon 3 of 3)	3' UTR (NM_025061, exon 3 of 3)	-2702	NM_001297555	5609	Hs.531754	NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_62299	chr20	56167981	56168074	+	6.92625	NA	Intergenic	MIRb|SINE|MIR	27605	NM_001160419	81030	Hs.302123	NM_030776	HPRD:09484	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43884	chr17	78234661	78234962	+	6.92361	NA	intron (NM_020954, intron 1 of 16)	CpG	151	NM_020954	57674	Hs.195642	NM_020914	HPRD:10716	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_74972	chr4	38665056	38665256	+	6.92361	NA	promoter-TSS (NM_016531)	promoter-TSS (NM_016531)	-634	NM_016531	51274	Hs.298658	NM_016531	HPRD:13920	KLF3	BKLF	Kruppel-like factor 3 (basic)	protein-coding
19-PTNLD28-TUMOR_peak_65147	chr22	31739413	31739539	+	6.92361	NA	intron (NM_032051, intron 1 of 2)	intron (NM_032051, intron 1 of 2)	2773	NM_032050	23598	Hs.731398	NM_014323	HPRD:05522	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ (BTB) and AT hook containing zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_87460	chr6	41863683	41863867	+	6.92361	NA	promoter-TSS (NM_018561)	promoter-TSS (NM_018561)	-676	NM_018561	25862	Hs.593575	NM_018561	HPRD:10075	USP49	-	ubiquitin specific peptidase 49	protein-coding
19-PTNLD28-TUMOR_peak_69401	chr3	99228219	99228357	+	6.92360	NA	Intergenic	Intergenic	-129152	NM_020351	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_91664	chr7	24945685	24945869	+	6.92360	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-13537	NR_104112	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_30806	chr14	65258491	65258584	+	6.92360	NA	exon (NM_000347, exon 14 of 31)	exon (NM_000347, exon 14 of 31)	-6133	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_1991	chr1	31208087	31208210	+	6.92360	NA	intron (NM_006762, intron 6 of 7)	intron (NM_006762, intron 6 of 7)	3931	NR_039616	100616164		NR_039616		MIR4420	-	microRNA 4420	ncRNA
19-PTNLD28-TUMOR_peak_75796	chr4	77693733	77693827	+	6.92360	NA	intron (NM_020859, intron 10 of 10)	intron (NM_020859, intron 10 of 10)	125222	NM_001029870	345079	Hs.257292	NM_001029870	HPRD:18789	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
19-PTNLD28-TUMOR_peak_81212	chr5	95033594	95034139	+	6.92360	NA	Intergenic	Intergenic	-15152	NR_125327	83890	Hs.50499	NM_031952	HPRD:12155	SPATA9	NYD-SP16	spermatogenesis associated 9	protein-coding
19-PTNLD28-TUMOR_peak_31029	chr14	69758985	69759161	+	6.92360	NA	intron (NM_020692, intron 1 of 15)	intron (NM_020692, intron 1 of 15)	32392	NM_001168368	57452	Hs.21035	NM_020692	HPRD:13562	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
19-PTNLD28-TUMOR_peak_38088	chr16	57880335	57880501	+	6.92360	NA	Intergenic	Intergenic	35869	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_16803	chr11	4258422	4258593	+	6.92360	NA	Intergenic	SVA_B|Other|Other	50125	NR_047550	100506082	Hs.445705	NR_047550	ENSG00000254480	LOC100506082	-	uncharacterized LOC100506082	ncRNA
19-PTNLD28-TUMOR_peak_70026	chr3	118925490	118925590	+	6.92360	NA	Intergenic	Intergenic	-19793	NR_046574	100874201	Hs.721307	NR_046574		B4GALT4-AS1	-	B4GALT4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23613	chr12	31030601	31030696	+	6.92360	NA	Intergenic	Intergenic	-49190	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
19-PTNLD28-TUMOR_peak_6332	chr1	145631621	145631818	+	6.92360	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	20729	NM_014455	27246	Hs.523550	NM_014455		RNF115	BCA2|ZNF364	ring finger protein 115	protein-coding
19-PTNLD28-TUMOR_peak_39687	chr17	2256417	2256548	+	6.92360	NA	intron (NM_014853, intron 2 of 23)	intron (NM_014853, intron 2 of 23)	15674	NM_001098509	9905	Hs.513861	NM_014853	HPRD:15284	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
19-PTNLD28-TUMOR_peak_109467	chrX	130687137	130687255	+	6.92360	NA	Intergenic	L1PA3|LINE|L1	9148	NM_001004486	347468	Hs.553711	NM_001004486	HPRD:18600	OR13H1	ORX1	olfactory receptor, family 13, subfamily H, member 1	protein-coding
19-PTNLD28-TUMOR_peak_18461	chr11	47327411	47327600	+	6.92360	NA	intron (NM_130474, intron 22 of 31)	L1M2a|LINE|L1	-33844	NR_120569	101928943	Hs.664956	NR_120568		LOC101928943	-	uncharacterized LOC101928943	ncRNA
19-PTNLD28-TUMOR_peak_19529	chr11	67526751	67527023	+	6.92360	NA	Intergenic	Intergenic	45920	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_41726	chr17	42589969	42590138	+	6.92360	NA	Intergenic	AluSp|SINE|Alu	-9096	NR_036474	23131	Hs.463129	NM_001002909		GPATCH8	GPATC8|KIAA0553	G patch domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_21481	chr11	118082913	118083055	+	6.92360	NA	intron (NR_104479, intron 2 of 8)	MIRb|SINE|MIR	1090	NM_153206	120425	Hs.16291	NM_153206	HPRD:16482	AMICA1	AMICA|CREA7-1|CREA7-4|Gm638|JAML	adhesion molecule, interacts with CXADR antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_55266	chr2	119739506	119739605	+	6.92360	NA	intron (NM_006770, intron 10 of 16)	intron (NM_006770, intron 10 of 16)	39810	NM_006770	8685	Hs.67726	NM_006770	HPRD:05337	MARCO	SCARA2	macrophage receptor with collagenous structure	protein-coding
19-PTNLD28-TUMOR_peak_60224	chr20	23763162	23763274	+	6.92360	NA	Intergenic	Intergenic	-31644	NM_001898	1469	Hs.123114	NM_001898	HPRD:00460	CST1	-	cystatin SN	protein-coding
19-PTNLD28-TUMOR_peak_77764	chr4	156416893	156417037	+	6.92360	NA	Intergenic	L2|LINE|L2	-118843	NM_001039580	79884	Hs.61271	NM_001039580	HPRD:07957	MAP9	ASAP	microtubule-associated protein 9	protein-coding
19-PTNLD28-TUMOR_peak_56350	chr2	153135077	153135343	+	6.92360	NA	Intergenic	HERVK9-int|LTR|ERVK	-56541	NM_052905	114793	Hs.654630	NM_052905	HPRD:13545	FMNL2	FHOD2	formin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_4471	chr1	78805831	78806024	+	6.92360	NA	intron (NR_027310, intron 3 of 5)	L4|LINE|RTE	110644	NR_027310	149047	Hs.352665	NM_144700	ENSG00000237413	MGC27382	-	uncharacterized MGC27382	ncRNA
19-PTNLD28-TUMOR_peak_44912	chr18	21159268	21159549	+	6.92360	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	7173	NM_000271	4864	Hs.464779	NM_000271	HPRD:09622	NPC1	NPC	Niemann-Pick disease, type C1	protein-coding
19-PTNLD28-TUMOR_peak_31155	chr14	71709218	71709331	+	6.92360	NA	Intergenic	Intergenic	-155780	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_60873	chr20	35947848	35947987	+	6.92210	NA	Intergenic	L2|LINE|L2	-25171	NM_005417	6714	Hs.195659	NM_005417	HPRD:01819	SRC	ASV|SRC1|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_25667	chr12	95867290	95867418	+	6.92210	NA	promoter-TSS (NM_006838)	promoter-TSS (NM_006838)	-468	NM_006838	10988	Hs.444986	NM_006838	HPRD:03522	METAP2	MAP2|MNPEP|p67|p67eIF2	methionyl aminopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_24179	chr12	50464384	50464580	+	6.92210	NA	intron (NM_020039, intron 3 of 11)	intron (NM_020039, intron 3 of 11)	-2886	NM_001256830	41	Hs.274361	NM_001095	HPRD:04182	ASIC1	ACCN2|ASIC|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
19-PTNLD28-TUMOR_peak_14292	chr10	74079751	74080019	+	6.92210	NA	Intergenic	Intergenic	35022	NM_001002762	54788	Hs.500013	NM_017626	HPRD:07086	DNAJB12	DJ10	DnaJ (Hsp40) homolog, subfamily B, member 12	protein-coding
19-PTNLD28-TUMOR_peak_631	chr1	9747978	9748091	+	6.92210	NA	intron (NM_005026, intron 1 of 23)	intron (NM_005026, intron 1 of 23)	-33390	NR_027045	644997	Hs.568595	NM_001045478	ENSG00000179840	C1orf200	-	chromosome 1 open reading frame 200	ncRNA
19-PTNLD28-TUMOR_peak_50878	chr2	7057387	7058079	+	6.92210	NA	5' UTR (NM_014746, exon 1 of 9)	5' UTR (NM_014746, exon 1 of 9)	210	NM_014746	9781	Hs.22146	NM_014746	HPRD:11510	RNF144A	RNF144|UBCE7IP4	ring finger protein 144A	protein-coding
19-PTNLD28-TUMOR_peak_52345	chr2	42396802	42397003	+	6.92202	NA	intron (NM_019063, intron 1 of 22)	CpG	412	NM_019063	27436	Hs.713173	NM_019063	HPRD:06310	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding
19-PTNLD28-TUMOR_peak_85330	chr6	11225056	11225157	+	6.92202	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	7809	NM_182966	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_29452	chr14	23236257	23236464	+	6.92202	NA	intron (NM_005015, intron 1 of 9)	CpG	629	NM_005015	5018	Hs.151134	NM_005015	HPRD:03043	OXA1L	OXA1	oxidase (cytochrome c) assembly 1-like	protein-coding
19-PTNLD28-TUMOR_peak_32406	chr14	106664092	106664230	+	6.92202	NA	Intergenic	Intergenic	-80108	NR_033375	338004	Hs.569411	NR_033375	ENSG00000229084	LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
19-PTNLD28-TUMOR_peak_97236	chr8	12441272	12441376	+	6.92202	NA	intron (NR_047662, intron 6 of 8)	intron (NR_047662, intron 6 of 8)	81796	NR_047662	729732	Hs.322761	NR_047662		LOC729732	-	uncharacterized LOC729732	ncRNA
19-PTNLD28-TUMOR_peak_10692	chr1	229100304	229100408	+	6.92202	NA	Intergenic	Intergenic	229532	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
19-PTNLD28-TUMOR_peak_46318	chr18	74399389	74399509	+	6.92202	NA	Intergenic	Intergenic	-2537	NR_122073	400661	Hs.514963	NR_122073		LOC400661	-	uncharacterized LOC400661	ncRNA
19-PTNLD28-TUMOR_peak_9312	chr1	202123995	202124186	+	6.92202	NA	intron (NM_080588, intron 4 of 8)	intron (NM_080588, intron 4 of 8)	5029	NM_080588	5778	Hs.402773	NM_002832	HPRD:01480	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase, non-receptor type 7	protein-coding
19-PTNLD28-TUMOR_peak_48443	chr19	30364124	30364264	+	6.92202	NA	Intergenic	CpG	-50357	NM_001252641	8725	Hs.466391	NM_003796	HPRD:11943	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin-like chaperone	protein-coding
19-PTNLD28-TUMOR_peak_50518	chr19	58175707	58176025	+	6.92202	NA	Intergenic	CpG	-4437	NM_152677	201516	Hs.469663	NM_152677	HPRD:15899	ZSCAN4	ZNF494	zinc finger and SCAN domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_30035	chr14	42074549	42074707	+	6.92202	NA	Intergenic	Intergenic	-2136	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_69459	chr3	101281356	101281458	+	6.92202	NA	intron (NM_017819, intron 1 of 1)	AluY|SINE|Alu	727	NM_017819	54931	Hs.594839	NM_017819	HPRD:15240	TRMT10C	HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75033	chr4	40318875	40319269	+	6.92202	NA	intron (NR_121640, intron 1 of 2)	intron (NR_121640, intron 1 of 2)	570	NR_121640	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_71225	chr3	139180616	139180776	+	6.92202	NA	intron (NM_004164, intron 2 of 3)	MER102a|DNA|hAT-Charlie	14656	NM_004164	5948	Hs.655516	NM_004164	HPRD:07184	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2, cellular	protein-coding
19-PTNLD28-TUMOR_peak_64001	chr21	46312823	46312919	+	6.92202	NA	intron (NM_001127491, intron 10 of 15)	intron (NM_001127491, intron 10 of 15)	-19053	NR_104597	754	Hs.474010	NM_004339	HPRD:04807	PTTG1IP	C21orf1|C21orf3|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_73057	chr3	187871000	187871193	+	6.91963	NA	promoter-TSS (NM_001167672)	promoter-TSS (NM_001167672)	-565	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_90785	chr7	1012452	1012593	+	6.91913	NA	intron (NM_001031617, intron 2 of 2)	intron (NM_001031617, intron 2 of 2)	2713	NM_001031617	90639	Hs.121593	NM_001031617		COX19	-	cytochrome c oxidase assembly homolog 19 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_1138	chr1	17278240	17278415	+	6.91913	NA	intron (NM_014675, intron 20 of 36)	MER91B|DNA|hAT-Tip100	28846	NM_001135248	4237	Hs.389137	NM_002403	HPRD:01137	MFAP2	MAGP|MAGP-1|MAGP1	microfibrillar-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_67170	chr3	23958938	23959238	+	6.91913	NA	promoter-TSS (NM_020345)	promoter-TSS (NM_020345)	-108	NM_001253380	6138	Hs.381219	NM_002948	HPRD:16043	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10	ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_109486	chrX	131622903	131623087	+	6.91646	NA	intron (NM_001170704, intron 1 of 8)	intron (NM_001170704, intron 1 of 8)	1001	NM_001170704	55796	Hs.105134	NM_018388	HPRD:02329	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind-like splicing regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_55306	chr2	120306967	120307066	+	6.91646	NA	intron (NR_073132, intron 3 of 24)	MIRb|SINE|MIR	5008	NR_073133	200373	Hs.496753	NM_001029996	HPRD:18748	CFAP221	FAP221|PCDP1	cilia and flagella associated protein 221	protein-coding
19-PTNLD28-TUMOR_peak_17231	chr11	12412199	12412321	+	6.91646	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	13234	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	parvin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_108139	chrX	46618412	46618659	+	6.91646	NA	promoter-TSS (NM_032591)	promoter-TSS (NM_032591)	72	NM_032591	84679	Hs.91389	NM_032591		SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7	protein-coding
19-PTNLD28-TUMOR_peak_78393	chr4	186990243	186990394	+	6.91646	NA	promoter-TSS (NM_003265)	promoter-TSS (NM_003265)	9	NM_003265	7098	Hs.657724	NM_003265		TLR3	CD283|IIAE2	toll-like receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_18487	chr11	47736508	47736606	+	6.91646	NA	intron (NM_024783, intron 1 of 18)	intron (NM_024783, intron 1 of 18)	371	NM_024783	79841	Hs.147377	NM_024783	HPRD:08039	AGBL2	CCP2	ATP/GTP binding protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_40467	chr17	18355314	18355484	+	6.91646	NA	Intergenic	Intergenic	12177	NR_073414	729252	Hs.585811	NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_27119	chr12	127878605	127878695	+	6.91646	NA	Intergenic	MER20|DNA|hAT-Charlie	-54033	NR_110057	101927616	Hs.637827	NR_110057	ENSG00000256362	LOC101927616	-	uncharacterized LOC101927616	ncRNA
19-PTNLD28-TUMOR_peak_22931	chr12	8437761	8437942	+	6.91646	NA	Intergenic	HERVE-int|LTR|ERV1	-42309	NR_024254	653113	Hs.661749	NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_108285	chrX	49020494	49020647	+	6.91646	NA	intron (NM_001099682, intron 2 of 4)	intron (NM_001099682, intron 2 of 4)	1389	NM_001099681	79917	Hs.193170	NM_024859		MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_28580	chr13	79980572	79980722	+	6.91646	NA	promoter-TSS (NM_001286631)	promoter-TSS (NM_001286631)	203	NR_038991	100505538	Hs.600720	NR_038991	ENSG00000227354	RBM26-AS1	-	RBM26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70735	chr3	129393479	129393599	+	6.91646	NA	intron (NM_001017395, intron 3 of 5)	intron (NM_001017395, intron 3 of 5)	14036	NR_033361	23023	Hs.477547	NM_015008	HPRD:15518	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
19-PTNLD28-TUMOR_peak_16406	chr10	135317014	135317105	+	6.91646	NA	Intergenic	L1PA2|LINE|L1	-23808	NM_000773	1571	Hs.12907	NM_000773	HPRD:11813	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450, family 2, subfamily E, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_72216	chr3	168865135	168865320	+	6.91466	NA	promoter-TSS (NM_001105078)	promoter-TSS (NM_001105078)	295	NM_001164000	2122	Hs.744090	NM_004991	HPRD:01310	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
19-PTNLD28-TUMOR_peak_50445	chr19	56644020	56644182	+	6.91466	NA	Intergenic	Intergenic	-8434	NM_001253792	55311	Hs.24545	NM_018337	HPRD:08488	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
19-PTNLD28-TUMOR_peak_99796	chr8	102313565	102313843	+	6.91466	NA	Intergenic	Intergenic	-67417	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	-	nascent-polypeptide-associated complex alpha polypeptide pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_83988	chr5	172143944	172144137	+	6.90683	NA	Intergenic	Intergenic	-38466	NM_001287812	101928093	Hs.646902	NM_001287812		LOC101928093	-	uncharacterized LOC101928093	protein-coding
19-PTNLD28-TUMOR_peak_85875	chr6	21587949	21588059	+	6.90683	NA	Intergenic	CpG	-5968	NM_003107	6659	Hs.643910	NM_003107	HPRD:01695	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
19-PTNLD28-TUMOR_peak_16527	chr11	844789	844906	+	6.90653	NA	intron (NM_001025237, intron 1 of 8)	intron (NM_001025237, intron 1 of 8)	401	NM_001025237	7106	Hs.654836	NM_003271	HPRD:04033	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
19-PTNLD28-TUMOR_peak_62297	chr20	56155630	56155804	+	6.90642	NA	Intergenic	L1ME2z|LINE|L1	19580	NM_002591	5105	Hs.1872	NM_002591	HPRD:02028	PCK1	PEPCK-C|PEPCK1|PEPCKC	phosphoenolpyruvate carboxykinase 1 (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_87692	chr6	44306191	44306561	+	6.90248	NA	Intergenic	Intergenic	-4021	NM_145026	221409	Hs.135283	NM_145026	HPRD:10248	SPATS1	DDIP|SPATA8|SRSP1	spermatogenesis associated, serine-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_31225	chr14	74005820	74005917	+	6.90248	NA	intron (NM_001037161, intron 1 of 2)	intron (NM_001037161, intron 1 of 2)	1940	NM_001037161	641371	Hs.446685	NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_105696	chr9	119131122	119131210	+	6.90248	NA	intron (NM_002581, intron 19 of 21)	intron (NM_002581, intron 19 of 21)	31719	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99729	chr8	101535446	101535565	+	6.90248	NA	intron (NM_198401, intron 5 of 5)	intron (NM_198401, intron 5 of 5)	36434	NM_001270378	157567	Hs.530199	NM_198401	HPRD:14103	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
19-PTNLD28-TUMOR_peak_90442	chr6	163835713	163835962	+	6.90248	NA	promoter-TSS (NR_037593)	promoter-TSS (NR_037593)	162	NM_001301085	9444	Hs.510324	NM_006775	HPRD:06691	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing, RNA binding	protein-coding
19-PTNLD28-TUMOR_peak_48475	chr19	31714855	31714998	+	6.90248	NA	Intergenic	Intergenic	125264	NM_020856	57616	Hs.278436	NM_020856	HPRD:18351	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_25798	chr12	100661551	100661658	+	6.90248	NA	promoter-TSS (NM_152317)	promoter-TSS (NM_152317)	55	NM_017988	55681	Hs.506481	NM_017988	HPRD:07642	SCYL2	CVAK104	SCY1-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_102125	chr9	6758951	6759054	+	6.90227	NA	intron (NM_001146695, intron 1 of 17)	intron (NM_001146695, intron 1 of 17)	1361	NM_015061	23081	Hs.709425	NM_015061	HPRD:12016	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1	lysine (K)-specific demethylase 4C	protein-coding
19-PTNLD28-TUMOR_peak_26683	chr12	120972712	120972828	+	6.90200	NA	exon (NM_014868, exon 1 of 17)	exon (NM_014868, exon 1 of 17)	638	NM_014868	9921	Hs.442798	NM_014868	HPRD:11496	RNF10	RIE2	ring finger protein 10	protein-coding
19-PTNLD28-TUMOR_peak_14296	chr10	74091471	74091612	+	6.89867	NA	Intergenic	Intergenic	23366	NM_001002762	54788	Hs.500013	NM_017626	HPRD:07086	DNAJB12	DJ10	DnaJ (Hsp40) homolog, subfamily B, member 12	protein-coding
19-PTNLD28-TUMOR_peak_46314	chr18	74332347	74332463	+	6.89867	NA	non-coding (NR_120419, exon 1 of 2)	non-coding (NR_120419, exon 1 of 2)	671	NR_120419	400660	Hs.131718	NR_120419		LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
19-PTNLD28-TUMOR_peak_44950	chr18	21595268	21595524	+	6.89820	NA	promoter-TSS (NR_110796)	promoter-TSS (NR_110796)	28	NR_110796	102724246	Hs.569872	NR_110796		LOC102724246	-	uncharacterized LOC102724246	ncRNA
19-PTNLD28-TUMOR_peak_2065	chr1	32169773	32169874	+	6.89820	NA	promoter-TSS (NM_001856)	promoter-TSS (NM_001856)	-55	NM_001856	1307	Hs.368921	NM_001856	HPRD:00381	COL16A1	447AA	collagen, type XVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_24019	chr12	48159456	48159565	+	6.88919	NA	Intergenic	L2b|LINE|L2	-6621	NM_001098531	10411	Hs.8578	NM_006105	HPRD:06928	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding
19-PTNLD28-TUMOR_peak_20951	chr11	106152608	106152714	+	6.88894	NA	Intergenic	MER61A|LTR|ERV1	30527	NR_120551	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
19-PTNLD28-TUMOR_peak_83248	chr5	150442877	150442973	+	6.88894	NA	intron (NM_001258454, intron 3 of 17)	intron (NM_001258454, intron 3 of 17)	1767	NM_001258456	10318	Hs.355141	NM_006058	HPRD:09216	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21880	chr11	125035324	125035443	+	6.88894	NA	promoter-TSS (NR_125759)	promoter-TSS (NR_125759)	824	NM_022062	63876	Hs.278564	NM_022062	HPRD:17857	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_38092	chr16	57933077	57933207	+	6.88894	NA	intron (NM_001297, intron 29 of 32)	intron (NM_001297, intron 29 of 32)	71878	NM_001135639	1258	Hs.147062	NM_001297	HPRD:07204	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel beta 1	protein-coding
19-PTNLD28-TUMOR_peak_13343	chr10	46768390	46768479	+	6.88808	NA	Intergenic	AluSz|SINE|Alu	-5542	NR_003611	399761	Hs.571994	NM_001040053	ENSG00000204164	BMS1P5	BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3	BMS1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_26915	chr12	123943373	123943550	+	6.88808	NA	promoter-TSS (NM_180699)	promoter-TSS (NM_180699)	-790	NM_180699	11066	Hs.632738	NM_007020		SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein 35kDa (U11/U12)	protein-coding
19-PTNLD28-TUMOR_peak_53191	chr2	66673840	66673942	+	6.88808	NA	intron (NM_002398, intron 6 of 12)	intron (NM_002398, intron 6 of 12)	11359	NM_002398	4211	Hs.526754	NM_002398	HPRD:03442	MEIS1	-	Meis homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_79705	chr5	43008718	43008922	+	6.88808	NA	Intergenic	Intergenic	10093	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
19-PTNLD28-TUMOR_peak_39289	chr16	87669427	87669533	+	6.88808	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	32987	NM_001271605	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_22345	chr12	212662	213013	+	6.88808	NA	intron (NM_015232, intron 2 of 12)	G-rich|Low_complexity|Low_complexity	26295	NM_015232	440073	Hs.536319	NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain 3	protein-coding
19-PTNLD28-TUMOR_peak_7690	chr1	161420508	161420648	+	6.88763	NA	Intergenic	CpG	-54627	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_22817	chr12	6962137	6962360	+	6.88715	NA	intron (NM_003481, intron 1 of 19)	intron (NM_003481, intron 1 of 19)	957	NM_003481	8078	Hs.631661	NM_003481	HPRD:03265	USP5	ISOT	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding
19-PTNLD28-TUMOR_peak_100865	chr8	129185969	129186132	+	6.88435	NA	Intergenic	Intergenic	23688	NR_031613	100302281		NR_031613	miRBase:MI0006341	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
19-PTNLD28-TUMOR_peak_97809	chr8	27099107	27099344	+	6.88020	NA	exon (NM_001283053, exon 4 of 8)	exon (NM_001283053, exon 4 of 8)	16731	NM_001283053	81551	Hs.201058	NM_030795	HPRD:18120	STMN4	RB3	stathmin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_95485	chr7	134190658	134190853	+	6.88020	NA	Intergenic	Intergenic	-21589	NM_020299	57016	Hs.116724	NM_020299	HPRD:05271	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding
19-PTNLD28-TUMOR_peak_59824	chr20	11435727	11435838	+	6.88020	NA	Intergenic	Intergenic	-181751	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_51637	chr2	26136185	26136277	+	6.88020	NA	Intergenic	Intergenic	-34919	NM_018263	55252	Hs.119815	NM_018263	HPRD:10676	ASXL2	ASXH2	additional sex combs like transcriptional regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_14687	chr10	86522611	86522735	+	6.88020	NA	Intergenic	Intergenic	337735	NM_001284242	54462	Hs.461988	NM_018999	HPRD:13832	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
19-PTNLD28-TUMOR_peak_17874	chr11	32969685	32969785	+	6.88020	NA	intron (NM_001076786, intron 4 of 12)	L1M5|LINE|L1	55011	NM_001076786	79832	Hs.369368	NM_024774	HPRD:08645	QSER1	-	glutamine and serine rich 1	protein-coding
19-PTNLD28-TUMOR_peak_17835	chr11	32208839	32208956	+	6.88020	NA	Intergenic	Intergenic	96420	NM_002901	5954	Hs.97887	NM_002901	HPRD:04111	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1, EF-hand calcium binding domain	protein-coding
19-PTNLD28-TUMOR_peak_27480	chr13	24558813	24558936	+	6.88020	NA	intron (NM_001286792, intron 2 of 14)	intron (NM_001286792, intron 2 of 14)	5109	NM_001286792	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_106544	chr9	135754180	135754393	+	6.88020	NA	promoter-TSS (NM_018956)	promoter-TSS (NM_018956)	-4	NM_018956	11092	Hs.62595	NM_018956	HPRD:12986	C9orf9	-	chromosome 9 open reading frame 9	protein-coding
19-PTNLD28-TUMOR_peak_37693	chr16	48985093	48985184	+	6.88020	NA	Intergenic	SVA_F|Other|Other	330604	NM_004352	869	Hs.458423	NM_004352	HPRD:02697	CBLN1	-	cerebellin 1 precursor	protein-coding
19-PTNLD28-TUMOR_peak_36236	chr16	10608684	10608803	+	6.88020	NA	Intergenic	Intergenic	65796	NM_001424	2013	Hs.531561	NM_001424	HPRD:11893	EMP2	NPHS10|XMP	epithelial membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_49573	chr19	47714023	47714226	+	6.88020	NA	TTS (NM_005500)	TTS (NM_005500)	-16075	NR_036158	100422899		NR_036158	miRBase:MI0014235	MIR3190	-	microRNA 3190	ncRNA
19-PTNLD28-TUMOR_peak_17554	chr11	19240388	19240656	+	6.88020	NA	Intergenic	LTR33C|LTR|ERVL	-8404	NM_003476	8048	Hs.83577	NM_003476	HPRD:07525	CSRP3	CLP|CMD1M|CMH12|CRP3|LMO4|MLP	cysteine and glycine-rich protein 3 (cardiac LIM protein)	protein-coding
19-PTNLD28-TUMOR_peak_43845	chr17	77866325	77866513	+	6.88020	NA	Intergenic	Intergenic	-26737	NR_110851	101928738	Hs.399280	NR_110851	ENSG00000262188	LOC101928738	-	uncharacterized LOC101928738	ncRNA
19-PTNLD28-TUMOR_peak_17236	chr11	12439970	12440136	+	6.88020	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	41027	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	parvin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_9767	chr1	206780366	206780458	+	6.88020	NA	intron (NM_001201478, intron 4 of 12)	L1ME4a|LINE|L1	5492	NM_006893	1939	Hs.497581	NM_006893	HPRD:01057	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
19-PTNLD28-TUMOR_peak_30836	chr14	65704749	65704850	+	6.88007	NA	Intergenic	Intergenic	-15734	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
19-PTNLD28-TUMOR_peak_100509	chr8	124172796	124172951	+	6.88007	NA	Intergenic	CpG	-18414	NM_207006	84985	Hs.379821	NM_032899	HPRD:17489	FAM83A	BJ-TSA-9	family with sequence similarity 83, member A	protein-coding
19-PTNLD28-TUMOR_peak_16132	chr10	126429993	126430086	+	6.88007	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	2891	NM_014661	9679	Hs.129195	NM_014661	HPRD:13314	FAM53B	KIAA0140|bA12J10.2	family with sequence similarity 53, member B	protein-coding
19-PTNLD28-TUMOR_peak_69826	chr3	112494923	112495126	+	6.88007	NA	Intergenic	Intergenic	-26858	NR_110017	101929694	Hs.385630	NR_110017	ENSG00000240893	LOC101929694	-	uncharacterized LOC101929694	ncRNA
19-PTNLD28-TUMOR_peak_82650	chr5	140052328	140052497	+	6.87907	NA	exon (NM_194249, exon 3 of 4)	exon (NM_194249, exon 3 of 4)	759	NM_194249	373863	Hs.591262	NM_194249	HPRD:13240	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_24504	chr12	54137534	54137622	+	6.87907	NA	Intergenic	Intergenic	8041	NR_104333	102216268	Hs.742074	NR_104332		CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
19-PTNLD28-TUMOR_peak_53678	chr2	80530397	80530624	+	6.87907	NA	exon (NM_178839, exon 2 of 2)	exon (NM_178839, exon 2 of 2)	977	NM_178839	347730	Hs.591580	NM_178839	HPRD:14323	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_66598	chr3	11278423	11278533	+	6.87907	NA	intron (NM_001098211, intron 1 of 1)	intron (NM_001098211, intron 1 of 1)	10809	NM_001098211	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_38143	chr16	58718292	58718396	+	6.87907	NA	intron (NM_018231, intron 1 of 11)	CpG	330	NM_018231	55238	Hs.10499	NM_018231		SLC38A7	SNAT7	solute carrier family 38, member 7	protein-coding
19-PTNLD28-TUMOR_peak_58486	chr2	220163532	220163638	+	6.87907	NA	intron (NM_001199763, intron 11 of 21)	intron (NM_001199763, intron 11 of 21)	-4663	NR_029688	406944		NR_029688		MIR153-1	MIRN153-1	microRNA 153-1	ncRNA
19-PTNLD28-TUMOR_peak_38636	chr16	71917736	71917847	+	6.87907	NA	promoter-TSS (NM_001201553)	promoter-TSS (NM_001201553)	302	NM_001201556	55565	Hs.744055	NM_017530	HPRD:14244	ZNF821	-	zinc finger protein 821	protein-coding
19-PTNLD28-TUMOR_peak_34564	chr15	75591749	75591837	+	6.87907	NA	Intergenic	Intergenic	16611	NM_001145224	653643	Hs.672474	NM_001145224		GOLGA6D	-	golgin A6 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_106435	chr9	133244136	133244224	+	6.87907	NA	intron (NM_001291815, intron 33 of 86)	THE1D|LTR|ERVL-MaLR	-75914	NM_054012	445	Hs.160786	NM_000050	HPRD:04590	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_29792	chr14	33402834	33403048	+	6.87907	NA	Intergenic	CpG	-5518	NM_001164749	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_58231	chr2	214018526	214018618	+	6.87868	NA	Intergenic	Intergenic	-2239	NM_001079526	22807	Hs.604950	NM_016260	HPRD:05872	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2 (Helios)	protein-coding
19-PTNLD28-TUMOR_peak_18284	chr11	44948715	44948936	+	6.87868	NA	intron (NM_130783, intron 8 of 8)	intron (NM_130783, intron 8 of 8)	22934	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_19385	chr11	66137662	66137839	+	6.87703	NA	intron (NM_001300868, intron 4 of 13)	L2c|LINE|L2	1541	NM_001532	3177	Hs.569017	NM_001532	HPRD:03662	SLC29A2	DER12|ENT2|HNP36	solute carrier family 29 (equilibrative nucleoside transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_14159	chr10	72647910	72648122	+	6.87450	NA	promoter-TSS (NM_001289797)	promoter-TSS (NM_001289797)	-5	NM_001289797	5092	Hs.3192	NM_000281	HPRD:00523	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_82941	chr5	145235648	145235762	+	6.87450	NA	Intergenic	L2a|LINE|L2	16826	NM_001080516	643226	Hs.570895	NM_001080516	ENSG00000204928	GRXCR2	DFNB101	glutaredoxin, cysteine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_89809	chr6	144608226	144608468	+	6.87450	NA	Intergenic	Intergenic	-4526	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_42669	chr17	57914538	57914636	+	6.87295	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-4040	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
19-PTNLD28-TUMOR_peak_49201	chr19	42390823	42391187	+	6.87193	NA	intron (NM_199002, intron 1 of 28)	intron (NM_199002, intron 1 of 28)	2559	NM_199002	9138	Hs.631550	NM_004706	HPRD:03511	ARHGEF1	GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_86924	chr6	34212000	34212152	+	6.87193	NA	intron (NM_145899, intron 5 of 5)	intron (NM_145899, intron 5 of 5)	3626	NR_106893	102465502		NR_106893		MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
19-PTNLD28-TUMOR_peak_20746	chr11	96040832	96040927	+	6.86941	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-33723	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_96420	chr7	151418459	151418589	+	6.86941	NA	intron (NM_001040633, intron 3 of 15)	intron (NM_001040633, intron 3 of 15)	-89180	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_73419	chr3	194498624	194498762	+	6.86201	NA	intron (NR_037891, intron 3 of 3)	intron (NR_037891, intron 3 of 3)	69543	NR_037891	100507391	Hs.590099	NR_037891	ENSG00000237222	LOC100507391	-	uncharacterized LOC100507391	ncRNA
19-PTNLD28-TUMOR_peak_58872	chr2	233195007	233195190	+	6.86201	NA	intron (NR_046477, intron 14 of 18)	intron (NR_046477, intron 14 of 18)	-48250	NM_001632	250	Hs.284255	NM_001632	ENSG00000163283	ALPP	ALP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
19-PTNLD28-TUMOR_peak_40586	chr17	19770754	19771190	+	6.86201	NA	5' UTR (NM_001142610, exon 1 of 28)	5' UTR (NM_001142610, exon 1 of 28)	267	NM_014683	9706	Hs.168762	NM_014683	HPRD:10556	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_106267	chr9	131103817	131103916	+	6.86201	NA	intron (NM_005094, intron 1 of 12)	intron (NM_005094, intron 1 of 12)	1027	NM_005094	10999	Hs.656699	NM_005094	HPRD:09172	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 (fatty acid transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_86214	chr6	27156743	27156851	+	6.86201	NA	Intergenic	HERVKC4-int|LTR|ERVK	41392	NR_036096	100422934		NR_036096	miRBase:MI0014167	MIR3143	-	microRNA 3143	ncRNA
19-PTNLD28-TUMOR_peak_104481	chr9	92219761	92220054	+	6.86030	NA	promoter-TSS (NM_006705)	promoter-TSS (NM_006705)	-20	NM_006705	10912	Hs.9701	NM_006705	HPRD:05383	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA-damage-inducible, gamma	protein-coding
19-PTNLD28-TUMOR_peak_32049	chr14	100622406	100622779	+	6.85823	NA	intron (NM_206918, intron 1 of 2)	MIR3|SINE|MIR	3420	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_489	chr1	8088471	8088631	+	6.85823	NA	Intergenic	Intergenic	-2158	NM_018948	54206	Hs.605445	NM_018948	HPRD:09218	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_20146	chr11	76293668	76293929	+	6.85798	NA	Intergenic	SVA_C|Other|Other	87246	NM_005512	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_37842	chr16	53165503	53165665	+	6.85709	NA	intron (NM_025134, intron 1 of 38)	CpG	76639	NM_025134	80205	Hs.59159	NM_025134	HPRD:08570	CHD9	AD013|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
19-PTNLD28-TUMOR_peak_2315	chr1	35249349	35249465	+	6.85709	NA	intron (NM_001005752, intron 1 of 1)	intron (NM_001005752, intron 1 of 1)	1496	NM_001005752	2707	Hs.522561	NM_024009	HPRD:04505	GJB3	CX31|DFNA2|DFNA2B|EKV	gap junction protein, beta 3, 31kDa	protein-coding
19-PTNLD28-TUMOR_peak_94071	chr7	96460196	96460405	+	6.85662	NA	Intergenic	Intergenic	-121097	NM_006304	7979	Hs.489201	NM_006304		SHFM1	DSS1|ECD|SEM1|SHFD1|SHSF1|Shfdg1	split hand/foot malformation (ectrodactyly) type 1	protein-coding
19-PTNLD28-TUMOR_peak_90734	chr7	373568	373664	+	6.85662	NA	Intergenic	Intergenic	43480	NM_001195127	100288524	Hs.702860	NM_001195127		WI2-2373I1.2	-	forkhead box L1-like	protein-coding
19-PTNLD28-TUMOR_peak_19939	chr11	73046646	73046738	+	6.85662	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	27029	NM_014786	9828	Hs.533719	NM_014786	HPRD:10658	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
19-PTNLD28-TUMOR_peak_7696	chr1	161435299	161435439	+	6.85662	NA	Intergenic	CpG	-39836	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_40147	chr17	9143485	9143750	+	6.85662	NA	3' UTR (NM_004822, exon 7 of 7)	3' UTR (NM_004822, exon 7 of 7)	-61182	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_39134	chr16	85006225	85006412	+	6.85662	NA	Intergenic	AluSz6|SINE|Alu	38823	NM_017740	55625	Hs.461610	NM_017740	HPRD:15722	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger, DHHC-type containing 7	protein-coding
19-PTNLD28-TUMOR_peak_59734	chr20	9048393	9048507	+	6.85662	NA	Intergenic	Intergenic	-1251	NM_001172646	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_9746	chr1	206645983	206646143	+	6.85219	NA	intron (NM_001193321, intron 2 of 20)	intron (NM_001193321, intron 2 of 20)	-2083	NR_106919	102466202		NR_106919		MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
19-PTNLD28-TUMOR_peak_26329	chr12	111840846	111840963	+	6.85219	NA	Intergenic	Intergenic	-2848	NM_005475	10019	Hs.506784	NM_005475	HPRD:05480	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
19-PTNLD28-TUMOR_peak_74070	chr4	4388643	4388934	+	6.85060	NA	promoter-TSS (NM_014392)	promoter-TSS (NM_014392)	98	NM_014392	27065	Hs.518595	NM_014392	HPRD:09624	NSG1	D4S234|D4S234E|NEEP21|P21	neuron specific gene family member 1	protein-coding
19-PTNLD28-TUMOR_peak_21818	chr11	123459018	123459153	+	6.85060	NA	intron (NM_001286563, intron 4 of 20)	intron (NM_001286563, intron 4 of 20)	28115	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_92327	chr7	44924355	44924574	+	6.85051	NA	exon (NM_033224, exon 1 of 1)	exon (NM_033224, exon 1 of 1)	520	NM_033224	5814	Hs.349150	NM_033224	HPRD:12325	PURB	PURBETA	purine-rich element binding protein B	protein-coding
19-PTNLD28-TUMOR_peak_61868	chr20	49411956	49412095	+	6.85051	NA	intron (NM_017843, intron 1 of 5)	CpG	594	NM_001010974	55653	Hs.381178	NM_017843	HPRD:06314	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
19-PTNLD28-TUMOR_peak_89278	chr6	119398865	119398982	+	6.84441	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	889	NM_024581	79632	Hs.443789	NM_024581	HPRD:09856	FAM184A	C6orf60	family with sequence similarity 184, member A	protein-coding
19-PTNLD28-TUMOR_peak_23775	chr12	39299056	39299163	+	6.84441	NA	intron (NM_153634, intron 1 of 19)	intron (NM_153634, intron 1 of 19)	311	NM_153634	144402	Hs.40910	NM_153634	HPRD:16747	CPNE8	-	copine VIII	protein-coding
19-PTNLD28-TUMOR_peak_47583	chr19	14089280	14089433	+	6.84441	NA	intron (NM_002918, intron 7 of 20)	intron (NM_002918, intron 7 of 20)	-25152	NM_001146254	79883	Hs.448497	NM_024825	HPRD:08027	PODNL1	SLRR5B	podocan-like 1	protein-coding
19-PTNLD28-TUMOR_peak_20740	chr11	95996599	95996783	+	6.84441	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-77911	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_65602	chr22	40061372	40061558	+	6.84441	NA	intron (NM_001003406, intron 20 of 35)	intron (NM_001003406, intron 20 of 35)	94707	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_14530	chr10	80712515	80712808	+	6.84441	NA	intron (NR_015429, intron 6 of 7)	intron (NR_015429, intron 6 of 7)	114544	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_73995	chr4	3582735	3582869	+	6.84441	NA	intron (NR_040045, intron 1 of 2)	intron (NR_040045, intron 1 of 2)	4206	NR_040045	285492	Hs.145563	NM_173661		LINC00955	-	long intergenic non-protein coding RNA 955	ncRNA
19-PTNLD28-TUMOR_peak_39796	chr17	4352003	4352102	+	6.84441	NA	intron (NM_182538, intron 6 of 11)	intron (NM_182538, intron 6 of 11)	14833	NM_182538	201305	Hs.657543	NM_182538	HPRD:14531	SPNS3	-	spinster homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_109730	chrX	149108795	149108928	+	6.84383	NA	intron (NR_027456, intron 1 of 11)	intron (NR_027456, intron 1 of 11)	2095	NR_027456	100272228	Hs.496916	NR_027456	ENSG00000235703	LINC00894	-	long intergenic non-protein coding RNA 894	ncRNA
19-PTNLD28-TUMOR_peak_2836	chr1	41882820	41882953	+	6.84319	NA	Intergenic	Intergenic	55283	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_37182	chr16	29913864	29913957	+	6.84319	NA	intron (NM_181718, intron 1 of 2)	AluY|SINE|Alu	1763	NM_181718	253982	Hs.655761	NM_181718	HPRD:14139	ASPHD1	-	aspartate beta-hydroxylase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_15291	chr10	103454849	103454947	+	6.84191	NA	promoter-TSS (NM_022039)	promoter-TSS (NM_022039)	-155	NM_022039	6468	Hs.500822	NM_022039	HPRD:06994	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_60330	chr20	25778920	25779188	+	6.84191	NA	intron (NR_026714, intron 1 of 3)	SST1|Satellite|centr	-2176	NR_027061	728882	Hs.682103	NR_026714		FAM182B	-	family with sequence similarity 182, member B	ncRNA
19-PTNLD28-TUMOR_peak_1696	chr1	26922488	26922590	+	6.84191	NA	Intergenic	SVA_D|Other|Other	41506	NR_031740	100302190		NR_031740		MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
19-PTNLD28-TUMOR_peak_98029	chr8	30295792	30296072	+	6.84191	NA	intron (NM_001008712, intron 1 of 6)	intron (NM_001008712, intron 1 of 6)	-53015	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	RBPMS-AS1	-	RBPMS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78963	chr5	13108127	13108667	+	6.84191	NA	Intergenic	Intergenic	533428	NR_033383	404663	Hs.552273	NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
19-PTNLD28-TUMOR_peak_99661	chr8	99394875	99395172	+	6.84191	NA	Intergenic	Intergenic	-44227	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_55118	chr2	114320291	114320413	+	6.84191	NA	Intergenic	Intergenic	-14607	NR_026821	654412	Hs.640260	NR_026821	ENSG00000226516	FAM138B	F379|bA395L14.6	family with sequence similarity 138, member B	ncRNA
19-PTNLD28-TUMOR_peak_103410	chr9	65968481	65968569	+	6.84191	NA	Intergenic	Intergenic	-458915	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_52086	chr2	36020659	36020760	+	6.84191	NA	Intergenic	Intergenic	562004	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_27062	chr12	126183000	126183118	+	6.84191	NA	Intergenic	Intergenic	76061	NM_001286219	114795	Hs.524838	NM_052907		TMEM132B	-	transmembrane protein 132B	protein-coding
19-PTNLD28-TUMOR_peak_87187	chr6	37184851	37184953	+	6.84191	NA	TTS (NM_001162900)	TTS (NM_001162900)	40511	NM_145316	221468	Hs.520101	NM_145316	HPRD:12848	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
19-PTNLD28-TUMOR_peak_97035	chr8	8174542	8174712	+	6.84191	NA	TTS (NM_001080826)	TTS (NM_001080826)	64717	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_65317	chr22	36553216	36553381	+	6.84191	NA	intron (NR_027833, intron 1 of 3)	intron (NR_027833, intron 1 of 3)	3679	NR_027833	80833	Hs.474737	NM_014349	HPRD:06264	APOL3	APOLIII|CG121	apolipoprotein L, 3	protein-coding
19-PTNLD28-TUMOR_peak_50325	chr19	55526116	55526525	+	6.84191	NA	exon (NM_016363, exon 8 of 8)	exon (NM_016363, exon 8 of 8)	23312	NM_016363	51206	Hs.661752	NM_016363	HPRD:10406	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_101338	chr8	139878422	139878551	+	6.84191	NA	intron (NM_152888, intron 3 of 64)	intron (NM_152888, intron 3 of 64)	47750	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_20823	chr11	100998107	100998390	+	6.84191	NA	exon (NM_001271161, exon 1 of 7)	exon (NM_001271161, exon 1 of 7)	1546	NM_001202474	5241	Hs.32405	NM_000926	HPRD:07077	PGR	NR3C3|PR	progesterone receptor	protein-coding
19-PTNLD28-TUMOR_peak_81979	chr5	127261806	127261905	+	6.83822	NA	Intergenic	MER57A1|LTR|ERV1	156911	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
19-PTNLD28-TUMOR_peak_38709	chr16	74734461	74734886	+	6.83751	NA	5' UTR (NM_001142497, exon 1 of 6)	5' UTR (NM_001142497, exon 1 of 6)	116	NM_152649	197259	Hs.119878	NM_152649	HPRD:08752	MLKL	hMLKL	mixed lineage kinase domain-like	protein-coding
19-PTNLD28-TUMOR_peak_57273	chr2	181703898	181704079	+	6.83751	NA	intron (NR_104320, intron 3 of 3)	L1HS|LINE|L1	-141124	NM_182678	10477	Hs.470804	NM_006357	HPRD:05000	UBE2E3	UBCH9|UbcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
19-PTNLD28-TUMOR_peak_83577	chr5	159310686	159310780	+	6.83751	NA	Intergenic	Intergenic	-12342	NR_109891	101927766	Hs.638568	NR_109891	ENSG00000253311	LOC101927766	-	uncharacterized LOC101927766	ncRNA
19-PTNLD28-TUMOR_peak_102282	chr9	16119993	16120428	+	6.83751	NA	Intergenic	Intergenic	132895	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_89340	chr6	125211591	125211873	+	6.83751	NA	Intergenic	LTR7Y|LTR|ERV1	-71959	NM_001286398	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_97753	chr8	26062158	26062402	+	6.83751	NA	Intergenic	Intergenic	-86727	NM_002717	5520	Hs.146339	NM_002717	HPRD:09223	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
19-PTNLD28-TUMOR_peak_21357	chr11	115980116	115980235	+	6.83751	NA	Intergenic	Intergenic	-349257	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_20451	chr11	86343851	86344060	+	6.83751	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	39285	NM_001014811	10873	Hs.199743	NM_006680	HPRD:06862	ME3	NADP-ME	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_80517	chr5	70432638	70432748	+	6.83751	NA	Intergenic	Intergenic	-43796	NR_026578	647859	Hs.671081	NR_026578		LOC647859	-	occludin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22300	chr11	133917541	133917666	+	6.83751	NA	Intergenic	Intergenic	15436	NR_027276	100128239	Hs.423734	NR_027276	ENSG00000204241	LOC100128239	-	uncharacterized LOC100128239	ncRNA
19-PTNLD28-TUMOR_peak_45274	chr18	34915511	34915605	+	6.83751	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	230442	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_35540	chr15	102029584	102029707	+	6.83751	NA	exon (NM_002570, exon 1 of 22)	exon (NM_002570, exon 1 of 22)	542	NM_138323	5046	Hs.498494	NM_002570	HPRD:01329	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
19-PTNLD28-TUMOR_peak_2598	chr1	39252368	39252478	+	6.83751	NA	Intergenic	Intergenic	73072	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_103062	chr9	38437557	38437672	+	6.83751	NA	Intergenic	Intergenic	-13170	NM_001007563	347252	Hs.349705	NM_001007563		IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_70530	chr3	126936522	126936732	+	6.83751	NA	Intergenic	L2a|LINE|L2	24653	NM_001007534	285311	Hs.591284	NM_001007534	HPRD:16949	C3orf56	-	chromosome 3 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_51962	chr2	30633142	30633302	+	6.83751	NA	Intergenic	Intergenic	-36901	NM_182551	253558	Hs.468048	NM_182551	HPRD:17458	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_54797	chr2	109934720	109935014	+	6.83751	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-4786	NR_036224	100423027		NR_036224	miRBase:MI0015870	MIR4266	-	microRNA 4266	ncRNA
19-PTNLD28-TUMOR_peak_52973	chr2	61885600	61885755	+	6.83751	NA	Intergenic	AluY|SINE|Alu	-120259	NM_003400	7514	Hs.370770	NM_003400	HPRD:03975	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
19-PTNLD28-TUMOR_peak_21322	chr11	114956358	114956462	+	6.83676	NA	Intergenic	Intergenic	407210	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_105358	chr9	112811284	112811393	+	6.83676	NA	intron (NM_001004065, intron 1 of 3)	intron (NM_001004065, intron 1 of 3)	460	NM_001198656	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|PRKA2	A kinase (PRKA) anchor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_8506	chr1	179030678	179030771	+	6.83633	NA	intron (NM_014864, intron 4 of 7)	AluJb|SINE|Alu	-20388	NM_022371	64222	Hs.584957	NM_022371		TOR3A	ADIR|ADIR2	torsin family 3, member A	protein-coding
19-PTNLD28-TUMOR_peak_16629	chr11	2017947	2018046	+	6.83633	NA	promoter-TSS (NR_030533)	promoter-TSS (NR_030533)	65	NR_030533	100033819		NR_030533		MIR675	MIRN675|hsa-mir-675	microRNA 675	ncRNA
19-PTNLD28-TUMOR_peak_74609	chr4	15657538	15657853	+	6.83633	NA	promoter-TSS (NM_001193534)	promoter-TSS (NM_001193534)	-660	NM_001193535	26234	Hs.643433	NM_012161	HPRD:05739	FBXL5	FBL4|FBL5|FLR1	F-box and leucine-rich repeat protein 5	protein-coding
19-PTNLD28-TUMOR_peak_75012	chr4	39978078	39978261	+	6.83633	NA	exon (NM_001100399, exon 2 of 33)	exon (NM_001100399, exon 2 of 33)	1407	NM_001100400	23244	Hs.331431	NM_015200	HPRD:11537	PDS5A	SCC-112|SCC112	PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_18913	chr11	61596244	61596587	+	6.83633	NA	intron (NM_004265, intron 1 of 11)	CpG	910	NM_004265	9415	Hs.502745	NM_004265	HPRD:05854	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
19-PTNLD28-TUMOR_peak_30256	chr14	51428440	51428528	+	6.83633	NA	Intergenic	Intergenic	-17236	NM_002863	5836	Hs.282417	NM_002863	HPRD:01987	PYGL	GSD6	phosphorylase, glycogen, liver	protein-coding
19-PTNLD28-TUMOR_peak_105824	chr9	123495536	123495749	+	6.83633	NA	Intergenic	Intergenic	-18877	NM_001080497	1955	Hs.744903	NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF-like-domains 9	protein-coding
19-PTNLD28-TUMOR_peak_49227	chr19	42760159	42760247	+	6.83633	NA	promoter-TSS (NM_006494)	promoter-TSS (NM_006494)	-887	NM_006494	2077	Hs.655969	NM_006494	HPRD:09942	ERF	CRS4|PE-2|PE2	Ets2 repressor factor	protein-coding
19-PTNLD28-TUMOR_peak_52378	chr2	43201567	43201713	+	6.83204	NA	Intergenic	Intergenic	65042	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_76875	chr4	122617390	122617561	+	6.83204	NA	intron (NM_001154, intron 2 of 12)	CpG	672	NM_001154	308	Hs.480653	NM_001154	HPRD:00568	ANXA5	ANX5|ENX2|HEL-S-7|PP4|RPRGL3	annexin A5	protein-coding
19-PTNLD28-TUMOR_peak_93548	chr7	76916348	76916459	+	6.82711	NA	intron (NM_020879, intron 16 of 18)	intron (NM_020879, intron 16 of 18)	-87253	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_27356	chr13	20752527	20752623	+	6.82711	NA	Intergenic	AluJo|SINE|Alu	14539	NM_004004	2706	Hs.524894	NM_004004	HPRD:00413	GJB2	CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein, beta 2, 26kDa	protein-coding
19-PTNLD28-TUMOR_peak_44389	chr18	6414149	6414257	+	6.82711	NA	intron (NM_173464, intron 1 of 19)	CpG	707	NM_173464	91133	Hs.128279	NM_173464	HPRD:08198	L3MBTL4	HsT1031	l(3)mbt-like 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_49676	chr19	48774537	48774634	+	6.82711	NA	5' UTR (NM_153608, exon 2 of 6)	5' UTR (NM_153608, exon 2 of 6)	1229	NM_153608	163071	Hs.511883	NM_153608	HPRD:14463	ZNF114	-	zinc finger protein 114	protein-coding
19-PTNLD28-TUMOR_peak_63030	chr21	29532841	29532993	+	6.82711	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	147235	NR_027246	246705	Hs.505079	NM_145180	HPRD:10778	LINC00314	C21orf94|NCRNA00314	long intergenic non-protein coding RNA 314	ncRNA
19-PTNLD28-TUMOR_peak_106077	chr9	127962990	127963180	+	6.82711	NA	5' UTR (NM_001174153, exon 2 of 8)	5' UTR (NM_001174153, exon 2 of 8)	223	NM_005833	10244	Hs.19012	NM_005833	HPRD:09337	RABEPK	RAB9P40|bA65N13.1|p40	Rab9 effector protein with kelch motifs	protein-coding
19-PTNLD28-TUMOR_peak_26767	chr12	122140018	122140223	+	6.82434	NA	Intergenic	AluJo|SINE|Alu	-10538	NM_001080825	144404	Hs.644504	NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
19-PTNLD28-TUMOR_peak_49404	chr19	46000295	46000557	+	6.82434	NA	promoter-TSS (NM_005619)	promoter-TSS (NM_005619)	-113	NM_005619	6253	Hs.47517	NM_005619	HPRD:04421	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
19-PTNLD28-TUMOR_peak_19561	chr11	67788829	67788918	+	6.82434	NA	intron (NM_001030010, intron 5 of 8)	intron (NM_001030010, intron 5 of 8)	-9211	NM_002496	4728	Hs.90443	NM_002496	HPRD:03683	NDUFS8	CI-23k|CI23KD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)	protein-coding
19-PTNLD28-TUMOR_peak_80627	chr5	72744538	72744688	+	6.82434	NA	promoter-TSS (NM_004472)	promoter-TSS (NM_004472)	-261	NM_004472	2297	Hs.519385	NM_004472	HPRD:03055	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
19-PTNLD28-TUMOR_peak_98298	chr8	38759076	38759219	+	6.82434	NA	intron (NM_021623, intron 1 of 12)	CpG	394	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_63920	chr21	45505989	45506184	+	6.82434	NA	intron (NM_003274, intron 15 of 22)	intron (NM_003274, intron 15 of 22)	-21122	NM_005049	5822	Hs.449076	NM_005049	HPRD:03279	PWP2	EHOC-17|PWP2H|UTP1	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_51464	chr2	20690225	20690384	+	6.82434	NA	Intergenic	L2c|LINE|L2	43469	NM_004040	388	Hs.502876	NM_004040	HPRD:01321	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
19-PTNLD28-TUMOR_peak_71365	chr3	141481297	141481576	+	6.82434	NA	Intergenic	L1PA2|LINE|L1	-15607	NM_139209	131890	Hs.680654	NM_139209		GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_76498	chr4	106912266	106912432	+	6.82434	NA	Intergenic	Intergenic	95752	NM_001184690	255743	Hs.518921	NM_198278	HPRD:14141	NPNT	EGFL6L|POEM	nephronectin	protein-coding
19-PTNLD28-TUMOR_peak_95077	chr7	127637418	127637533	+	6.82434	NA	promoter-TSS (NR_027330)	promoter-TSS (NR_027330)	-87	NR_027330	27099	Hs.657377	NM_014411		SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_49005	chr19	39900122	39900289	+	6.82382	NA	TTS (NR_039755)	TTS (NR_039755)	113	NR_039755	100616163		NR_039755	miRBase:MI0016897	MIR4530	-	microRNA 4530	ncRNA
19-PTNLD28-TUMOR_peak_107296	chrUn_gl000231	18796	19125	+	6.81821	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_51292	chr2	16060896	16061030	+	6.81821	NA	non-coding (NR_125783, exon 1 of 3)	non-coding (NR_125783, exon 1 of 3)	442	NR_125783	103752554	Hs.269571	NR_125783		MYCNUT	MYCNUN|lncUSMycN	MYCN upstream transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_101488	chr8	142420088	142420422	+	6.81821	NA	Intergenic	Intergenic	-11233	NM_007079	11156	Hs.43666	NM_007079		PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
19-PTNLD28-TUMOR_peak_62270	chr20	55984854	55985200	+	6.81732	NA	TTS (NM_017495)	TTS (NM_017495)	18573	NM_001291780	55544	Hs.236361	NM_017495	HPRD:15268	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
19-PTNLD28-TUMOR_peak_9419	chr1	203297022	203297167	+	6.81732	NA	Intergenic	Intergenic	22430	NM_006763	7832	Hs.519162	NM_006763	HPRD:03357	BTG2	PC3|TIS21	BTG family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28156	chr13	47128767	47128917	+	6.81583	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	1546	NM_015116	23143	Hs.507971	NM_015116	HPRD:14307	LRCH1	CHDC1|NP81	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_107456	chrX	7065802	7066397	+	6.81583	NA	TTS (NR_039924)	TTS (NR_039924)	132	NM_001178136	8226	Hs.185910	NM_012080	HPRD:02383	HDHD1	DXF68S1E|FAM16AX|GS1|HDHD1A	haloacid dehalogenase-like hydrolase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_41829	chr17	43524773	43524977	+	6.81583	NA	intron (NR_027782, intron 7 of 10).2	intron (NR_027782, intron 7 of 10).2	-14593	NM_174919	201176	Hs.205326	NM_174919	HPRD:12477	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
19-PTNLD28-TUMOR_peak_35549	chr15	102156157	102156305	+	6.81583	NA	Intergenic	Intergenic	36363	NM_078474	80213	Hs.288912	NM_025141	HPRD:16554	TM2D3	BLP2	TM2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_48190	chr19	20188977	20189213	+	6.81583	NA	intron (NM_007138, intron 1 of 3)	intron (NM_007138, intron 1 of 3)	292	NM_007138	7643	Hs.55304	NM_007138		ZNF90	HTF9	zinc finger protein 90	protein-coding
19-PTNLD28-TUMOR_peak_109149	chrX	109245859	109245993	+	6.81583	NA	promoter-TSS (NM_017698)	promoter-TSS (NM_017698)	63	NM_017698	84187	Hs.496572	NM_017698	HPRD:06539	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
19-PTNLD28-TUMOR_peak_35421	chr15	99191637	99191895	+	6.81583	NA	promoter-TSS (NM_000875)	promoter-TSS (NM_000875)	-2	NM_000875	3480	Hs.643120	NM_000875	HPRD:00932	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin-like growth factor 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_55841	chr2	133429195	133429322	+	6.81500	NA	promoter-TSS (NM_001077427)	promoter-TSS (NM_001077427)	-188	NM_001077427	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_1766	chr1	27692728	27692838	+	6.81500	NA	exon (NM_004672, exon 1 of 29)	exon (NM_004672, exon 1 of 29)	574	NM_004672	9064	Hs.194694	NM_004672	HPRD:05126	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_93547	chr7	76913345	76913463	+	6.81500	NA	intron (NM_020879, intron 15 of 18)	LTR85a|LTR|Gypsy?	-84254	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_91111	chr7	5673172	5673410	+	6.81500	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	40855	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_69461	chr3	101293204	101293938	+	6.81500	NA	intron (NM_020357, intron 1 of 4)	CpG	529	NM_020357	57092	Hs.744968	NM_020357	HPRD:17826	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
19-PTNLD28-TUMOR_peak_87983	chr6	52787894	52787997	+	6.81500	NA	Intergenic	LTR5_Hs|LTR|ERVK	-13449	NM_000847	2940	Hs.102484	NM_000847	HPRD:07290	GSTA3	GSTA3-3|GTA3	glutathione S-transferase alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_42746	chr17	60142415	60142532	+	6.81500	NA	intron (NM_005121, intron 1 of 29)	CpG	170	NM_005121	9969	Hs.282678	NM_005121	HPRD:07229	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
19-PTNLD28-TUMOR_peak_78405	chr4	187123108	187123250	+	6.81500	NA	intron (NM_207352, intron 7 of 10)	intron (NM_207352, intron 7 of 10)	10505	NM_207352	285440	Hs.587231	NM_207352		CYP4V2	BCD|CYP4AH1	cytochrome P450, family 4, subfamily V, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_53527	chr2	74214700	74214812	+	6.81407	NA	intron (NM_001287491, intron 1 of 10)	MIR3|SINE|MIR	1225	NM_001287491	200424	Hs.516107	NM_144993	ENSG00000187605	TET3	-	tet methylcytosine dioxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_4853	chr1	92077085	92077215	+	6.81025	NA	Intergenic	Intergenic	110485	NM_001134420	8317	Hs.533573	NM_003503	HPRD:10345	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
19-PTNLD28-TUMOR_peak_21530	chr11	118792903	118793004	+	6.80820	NA	Intergenic	Intergenic	-11340	NM_182557	283149	Hs.414740	NM_182557		BCL9L	BCL9-2|DLNB11	B-cell CLL/lymphoma 9-like	protein-coding
19-PTNLD28-TUMOR_peak_49483	chr19	46800112	46800229	+	6.80523	NA	promoter-TSS (NM_152795)	promoter-TSS (NM_152795)	-133	NM_152795	64344	Hs.420830	NM_022462	HPRD:17104	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_42763	chr17	60535218	60535431	+	6.80523	NA	Intergenic	Intergenic	-21062	NM_006852	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_27785	chr13	34185317	34185445	+	6.80523	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	65591	NM_001243476	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_98853	chr8	56757676	56757933	+	6.80523	NA	Intergenic	LTR8|LTR|ERV1	-34582	NM_001111097	4067	Hs.491767	NM_002350	HPRD:01301	LYN	JTK8|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_67701	chr3	42074236	42074361	+	6.80523	NA	Intergenic	AluJr|SINE|Alu	-58448	NM_001042646	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_79965	chr5	55626074	55626265	+	6.80523	NA	Intergenic	Intergenic	-96983	NM_024669	79722	Hs.436214	NM_024669	HPRD:07758	ANKRD55	-	ankyrin repeat domain 55	protein-coding
19-PTNLD28-TUMOR_peak_79058	chr5	15271164	15271255	+	6.80523	NA	Intergenic	Intergenic	-4540	NR_109944	101929454	Hs.453273	NR_109944		LOC101929454	-	uncharacterized LOC101929454	ncRNA
19-PTNLD28-TUMOR_peak_85751	chr6	18293918	18294259	+	6.80523	NA	Intergenic	Intergenic	-29289	NM_001134709	7913	Hs.484813	NM_003472	HPRD:00503	DEK	D6S231E	DEK proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_63218	chr21	34415246	34415405	+	6.80523	NA	Intergenic	Intergenic	-14810	NR_104056	101930746	Hs.580934	NR_104056		LINC00945	-	long intergenic non-protein coding RNA 945	ncRNA
19-PTNLD28-TUMOR_peak_26135	chr12	108772789	108772901	+	6.80523	NA	Intergenic	AluJr4|SINE|Alu	-39751	NM_001142343	1240	Hs.197143	NM_004072	HPRD:03829	CMKLR1	CHEMERINR|ChemR23|DEZ|RVER1	chemokine-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_39565	chr17	635686	635949	+	6.80523	NA	promoter-TSS (NM_024792)	promoter-TSS (NM_024792)	-30	NM_024792	79850	Hs.154396	NM_024792	HPRD:13096	FAM57A	CT120	family with sequence similarity 57, member A	protein-coding
19-PTNLD28-TUMOR_peak_67698	chr3	42054462	42054606	+	6.80523	NA	Intergenic	Intergenic	-50874	NM_017886	54986	Hs.656192	NM_017886	HPRD:07928	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_105566	chr9	116900832	116900954	+	6.80523	NA	Intergenic	Intergenic	-17338	NM_032888	85301	Hs.494892	NM_032888		COL27A1	STLS	collagen, type XXVII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_10939	chr1	233687374	233687537	+	6.80523	NA	Intergenic	MER67C|LTR|ERV1	-62295	NM_002245	3775	Hs.208544	NM_002245	HPRD:03447	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	potassium channel, subfamily K, member 1	protein-coding
19-PTNLD28-TUMOR_peak_66863	chr3	14903392	14903572	+	6.80523	NA	intron (NM_152536, intron 1 of 19)	L2|LINE|L2	43013	NM_152536	152273	Hs.412406	NM_152536	HPRD:13322	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_107804	chrX	23311570	23311700	+	6.80523	NA	promoter-TSS (NR_073010)	promoter-TSS (NR_073010)	-372	NR_073010	100873065	Hs.742479	NR_046436	ENSG00000233067	PTCHD1-AS	DDX53-AS1|PTCHD1AS1|PTCHD1AS2	PTCHD1 antisense RNA (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_25643	chr12	95269521	95269625	+	6.80523	NA	Intergenic	Intergenic	41343	NR_036685	160313	Hs.527883	NR_036685	ENSG00000216306	KRT19P2	KRT19P5	keratin 19 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_32042	chr14	100539209	100539355	+	6.80523	NA	intron (NM_016337, intron 1 of 13)	MIR3|SINE|MIR	7531	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_7242	chr1	155908087	155908176	+	6.80400	NA	Intergenic	Intergenic	-3349	NM_181885	339403	Hs.449914	NM_181885	HPRD:16421	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin/insulin-like family peptide receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_75652	chr4	74123007	74123116	+	6.80358	NA	intron (NM_032217, intron 1 of 33)	intron (NM_032217, intron 1 of 33)	1441	NM_032217	26057	Hs.601206	NM_032217	HPRD:10648	ANKRD17	GTAR|NY-BR-16	ankyrin repeat domain 17	protein-coding
19-PTNLD28-TUMOR_peak_8600	chr1	181059329	181059519	+	6.79991	NA	3' UTR (NM_016545, exon 1 of 1)	3' UTR (NM_016545, exon 1 of 1)	1786	NM_016545	51278	Hs.15725	NM_016545	HPRD:06210	IER5	SBBI48	immediate early response 5	protein-coding
19-PTNLD28-TUMOR_peak_12954	chr10	35929561	35929671	+	6.79940	NA	TTS (NR_039831)	TTS (NR_039831)	564	NR_039831	100616500		NR_039831		MIR4683	-	microRNA 4683	ncRNA
19-PTNLD28-TUMOR_peak_40801	chr17	27070185	27070344	+	6.79940	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-759	NM_004295	9618	Hs.8375	NM_004295	HPRD:03915	TRAF4	CART1|MLN62|RNF83	TNF receptor-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_89096	chr6	111196759	111196975	+	6.79827	NA	intron (NM_001287216, intron 1 of 4)	CpG	880	NM_001634	262	Hs.159118	NM_001634	HPRD:01622	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_4980	chr1	94515921	94516111	+	6.79827	NA	intron (NM_000350, intron 17 of 49)	intron (NM_000350, intron 17 of 49)	70689	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_82513	chr5	138677854	138678177	+	6.79827	NA	promoter-TSS (NM_001033112)	promoter-TSS (NM_001033112)	-108	NM_001033112	51247	Hs.396644	NM_016480	HPRD:05726	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_51717	chr2	27308521	27308679	+	6.79827	NA	exon (NM_007046, exon 8 of 8)	exon (NM_007046, exon 8 of 8)	-1011	NM_006488	3795	Hs.567297	NM_000221	HPRD:11774	KHK	-	ketohexokinase (fructokinase)	protein-coding
19-PTNLD28-TUMOR_peak_33704	chr15	57853752	57853852	+	6.79489	NA	Intergenic	Intergenic	-30300	NR_104368	145781	Hs.437256	NM_001018090		GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
19-PTNLD28-TUMOR_peak_105662	chr9	118054159	118054403	+	6.79489	NA	intron (NM_017418, intron 3 of 7)	intron (NM_017418, intron 3 of 7)	150184	NM_017418	50514	Hs.148841	NM_017418	HPRD:16068	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_97503	chr8	21327574	21327735	+	6.79489	NA	Intergenic	Intergenic	171904	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
19-PTNLD28-TUMOR_peak_101061	chr8	133202509	133202638	+	6.79489	NA	intron (NM_004519, intron 1 of 14)	MLT1E1A|LTR|ERVL-MaLR	-85061	NM_001145095	10086	Hs.285026	NM_005712	HPRD:06823	HHLA1	PLA2L	HERV-H LTR-associating 1	protein-coding
19-PTNLD28-TUMOR_peak_6373	chr1	146103667	146103765	+	6.79489	NA	intron (NR_104217, intron 2 of 17).2	MLT1H1|LTR|ERVL-MaLR	-21083	NR_110864	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_26630	chr12	120556630	120556720	+	6.79489	NA	Intergenic	Intergenic	-2032	NM_006861	11021	Hs.524788	NM_006861	HPRD:05010	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_32825	chr15	30795196	30795420	+	6.79489	NA	Intergenic	Intergenic	-69450	NR_027470	100288380	Hs.642616	NR_027470	ENSG00000260128	ULK4P2	D-X|FAM7A2	ULK4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_45910	chr18	55619333	55619847	+	6.79489	NA	Intergenic	Intergenic	-92020	NM_015277	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_33772	chr15	59432770	59433116	+	6.79489	NA	intron (NM_004998, intron 26 of 27)	intron (NM_004998, intron 26 of 27)	30518	NR_031750	100313886		NR_031750		MIR2116	-	microRNA 2116	ncRNA
19-PTNLD28-TUMOR_peak_88772	chr6	91103176	91103281	+	6.79489	NA	Intergenic	Intergenic	80767	NR_039671	100616109		NR_039671	miRBase:MI0016812	MIR4464	-	microRNA 4464	ncRNA
19-PTNLD28-TUMOR_peak_45272	chr18	34900351	34900476	+	6.79489	NA	intron (NM_001025089, intron 3 of 11)	intron (NM_001025089, intron 3 of 11)	245587	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_27147	chr12	128995161	128995362	+	6.79489	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	216624	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_11829	chr10	5707971	5708100	+	6.79489	NA	intron (NR_024581, intron 1 of 4)	CpG	523	NR_037164	79754	Hs.445899	NM_024701	HPRD:10667	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
19-PTNLD28-TUMOR_peak_31336	chr14	75774611	75774714	+	6.79489	NA	Intergenic	Intergenic	13555	NR_038421	731223	Hs.534624	NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
19-PTNLD28-TUMOR_peak_53347	chr2	70388227	70388372	+	6.79489	NA	intron (NM_017880, intron 8 of 9)	intron (NM_017880, intron 8 of 9)	29852	NM_017880	54980	Hs.720049	NM_017880	HPRD:07927	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
19-PTNLD28-TUMOR_peak_72021	chr3	158563694	158563784	+	6.79489	NA	Intergenic	Intergenic	44024	NM_001167903	64747	Hs.58663	NM_022736	HPRD:07851	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_5773	chr1	116381942	116382056	+	6.79489	NA	intron (NM_001111061, intron 1 of 1)	CpG	1334	NM_001111061	4808	Hs.46296	NM_005599	HPRD:01213	NHLH2	HEN2|NSCL2|bHLHa34	nescient helix loop helix 2	protein-coding
19-PTNLD28-TUMOR_peak_90391	chr6	161351853	161351953	+	6.79489	NA	Intergenic	Intergenic	-60856	NM_005922	4216	Hs.390428	NM_005922	HPRD:03886	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_61030	chr20	38133033	38133229	+	6.79489	NA	Intergenic	Intergenic	-279740	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_28897	chr13	103244735	103244849	+	6.79353	NA	Intergenic	LTR16B2|LTR|ERVL	-4494	NM_003291	7174	Hs.432424	NM_003291	HPRD:01834	TPP2	TPP-2	tripeptidyl peptidase II	protein-coding
19-PTNLD28-TUMOR_peak_5551	chr1	112281713	112281834	+	6.79353	NA	promoter-TSS (NR_038951)	promoter-TSS (NR_038951)	273	NM_019099	55924	Hs.193406	NM_019099	HPRD:14246	FAM212B	C1orf183	family with sequence similarity 212, member B	protein-coding
19-PTNLD28-TUMOR_peak_33017	chr15	34729255	34729409	+	6.79231	NA	intron (NR_027409, intron 1 of 23)	CpG	335	NR_027409	23015	Hs.182982	NM_181077	HPRD:09974	GOLGA8A	GM88	golgin A8 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_62659	chr20	62733487	62733612	+	6.79231	NA	Intergenic	CpG	4635	NM_005286	2832	Hs.248118	NM_005286		NPBWR2	GPR8	neuropeptides B/W receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_106734	chr9	139237278	139237401	+	6.79231	NA	intron (NM_001145638, intron 9 of 13)	CpG	-10170	NM_001145639	26086	Hs.239370	NM_015597	HPRD:17075	GPSM1	AGS3	G-protein signaling modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_86315	chr6	28367144	28367247	+	6.79231	NA	intron (NR_028077, intron 1 of 5)	CpG	349	NR_028077	9753	Hs.134816	NM_014724		ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_99324	chr8	81663477	81663571	+	6.78737	NA	intron (NM_001033723, intron 2 of 8)	intron (NM_001033723, intron 2 of 8)	123492	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
19-PTNLD28-TUMOR_peak_89670	chr6	138776870	138777255	+	6.78737	NA	intron (NM_020464, intron 3 of 6)	intron (NM_020464, intron 3 of 6)	-20631	NR_036099	100423001		NR_036099		MIR3145	-	microRNA 3145	ncRNA
19-PTNLD28-TUMOR_peak_7302	chr1	156355554	156355669	+	6.78737	NA	TTS (NM_020407)	TTS (NM_020407)	16631	NR_046115	57127	Hs.131835	NM_020407	HPRD:06152	RHBG	SLC42A2	Rh family, B glycoprotein (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_41691	chr17	42247943	42248064	+	6.78737	NA	promoter-TSS (NM_080863)	promoter-TSS (NM_080863)	-71	NM_080863	92591	Hs.534517	NM_080863	HPRD:10670	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
19-PTNLD28-TUMOR_peak_35550	chr15	102156421	102156538	+	6.78737	NA	Intergenic	Intergenic	36115	NM_078474	80213	Hs.288912	NM_025141	HPRD:16554	TM2D3	BLP2	TM2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_52372	chr2	43152013	43152196	+	6.78737	NA	Intergenic	Intergenic	114578	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_33091	chr15	38546627	38546742	+	6.78737	NA	intron (NM_152594, intron 1 of 6)	intron (NM_152594, intron 1 of 6)	1632	NM_152594	161742	Hs.525781	NM_152594	HPRD:11601	SPRED1	NFLS|PPP1R147|hSpred1|spred-1	sprouty-related, EVH1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43294	chr17	72200064	72200177	+	6.78459	NA	intron (NM_001035258, intron 2 of 4)	CpG-11066	325	NM_001035258	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_41754	chr17	43019170	43019417	+	6.78459	NA	intron (NM_001264573, intron 1 of 14)	intron (NM_001264573, intron 1 of 14)	5786	NM_001265577	146909	Hs.135094	NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
19-PTNLD28-TUMOR_peak_37052	chr16	28627383	28627477	+	6.78459	NA	intron (NM_177536, intron 2 of 5)	LTR13|LTR|ERVK	-6065	NM_177529	6817	Hs.567342	NM_001055	HPRD:01372	SULT1A1	HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1	sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1	protein-coding
19-PTNLD28-TUMOR_peak_23340	chr12	20365004	20365282	+	6.78459	NA	Intergenic	L2c|LINE|L2	-157036	NM_000921	5139	Hs.386791	NM_000921	HPRD:00441	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
19-PTNLD28-TUMOR_peak_49750	chr19	49244809	49244946	+	6.78459	NA	promoter-TSS (NM_017805)	promoter-TSS (NM_017805)	-907	NM_017805	54922	Hs.233955	NM_017805	HPRD:15214	RASIP1	RAIN	Ras interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_146	chr1	1343131	1343319	+	6.78459	NA	promoter-TSS (NM_017971)	promoter-TSS (NM_017971)	-532	NM_017971	55052	Hs.182698	NM_017971	HPRD:14746	MRPL20	L20mt|MRP-L20	mitochondrial ribosomal protein L20	protein-coding
19-PTNLD28-TUMOR_peak_80526	chr5	70616619	70616722	+	6.78459	NA	Intergenic	L1P4b|LINE|L1	-54942	NR_003922	5370	Hs.742169	NM_031888	HPRD:15941	PMCHL2	-	pro-melanin-concentrating hormone-like 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103298	chr9	44867890	44868028	+	6.78459	NA	Intergenic	Intergenic	-122277	NR_027421	100132948	Hs.645763	NM_001024942	ENSG00000154537	FAM27C	FAM27A|FAM27A1|FAM27A3	family with sequence similarity 27, member C	ncRNA
19-PTNLD28-TUMOR_peak_104337	chr9	89809164	89809324	+	6.78459	NA	Intergenic	Intergenic	45685	NM_001001709	401535	Hs.657740	NM_001001709	HPRD:16988	C9orf170	-	chromosome 9 open reading frame 170	protein-coding
19-PTNLD28-TUMOR_peak_3816	chr1	59245481	59245790	+	6.78306	NA	TTS (NM_002228)	TTS (NM_002228)	4150	NM_002228	3725	Hs.696684	NM_002228	HPRD:01302	JUN	AP-1|AP1|c-Jun	jun proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_18373	chr11	45944920	45945058	+	6.78277	NA	intron (NM_001300722, intron 3 of 14)	intron (NM_001300722, intron 3 of 14)	762	NM_001300721	120071	Hs.86543	NM_152312	HPRD:13618	GYLTL1B	LARGE2	glycosyltransferase-like 1B	protein-coding
19-PTNLD28-TUMOR_peak_102228	chr9	14314011	14314099	+	6.78277	NA	promoter-TSS (NM_001190737)	promoter-TSS (NM_001190737)	-10	NM_001190737	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_62832	chr21	17103693	17103799	+	6.78016	NA	intron (NM_001283041, intron 1 of 25)	intron (NM_001283041, intron 1 of 25)	1402	NM_001283041	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_107596	chrX	13710326	13710462	+	6.78016	NA	intron (NM_001195328, intron 1 of 1)	AluJo|SINE|Alu	3154	NM_004251	9367	Hs.495704	NM_004251		RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_49173	chr19	41934033	41934138	+	6.78016	NA	intron (NM_198540, intron 1 of 2)	intron (NM_198540, intron 1 of 2)	550	NM_198540	374907	Hs.441681	NM_198540	HPRD:12510	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_95285	chr7	130009282	130009391	+	6.77866	NA	TTS (NM_001127442)	TTS (NM_001127442)	-10954	NM_001868	1357	Hs.2879	NM_001868	HPRD:00269	CPA1	CPA	carboxypeptidase A1 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_40418	chr17	17718353	17718659	+	6.77852	NA	intron (NM_001005291, intron 14 of 19)	intron (NM_001005291, intron 14 of 19)	-1261	NR_030361	693120		NR_030361		MIR33B	MIRN33B|hsa-mir-33b	microRNA 33b	ncRNA
19-PTNLD28-TUMOR_peak_43848	chr17	77899189	77899291	+	6.77852	NA	intron (NR_110850, intron 1 of 5)	intron (NR_110850, intron 1 of 5)	1284	NR_110850	101928766	Hs.630666	NR_110850	ENSG00000262585	LOC101928766	-	uncharacterized LOC101928766	ncRNA
19-PTNLD28-TUMOR_peak_94571	chr7	102714575	102714824	+	6.77814	NA	promoter-TSS (NM_001161012)	promoter-TSS (NM_001161012)	316	NM_145032	222235	Hs.660029	NM_145032	HPRD:12364	FBXL13	Fbl13	F-box and leucine-rich repeat protein 13	protein-coding
19-PTNLD28-TUMOR_peak_37084	chr16	28962630	28962803	+	6.77626	NA	exon (NM_032815, exon 1 of 8)	exon (NM_032815, exon 1 of 8)	398	NM_032815	84901	Hs.513470	NM_032815	HPRD:10971	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_51106	chr2	10952103	10952207	+	6.77185	NA	intron (NM_001282707, intron 1 of 13)	AluSp|SINE|Alu	810	NM_005742	10130	Hs.212102	NM_005742	HPRD:07504	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A, member 6	protein-coding
19-PTNLD28-TUMOR_peak_69771	chr3	111793620	111793728	+	6.77185	NA	intron (NR_026734, intron 13 of 16)	intron (NR_026734, intron 13 of 16)	-11508	NM_001171747	79669	Hs.434247	NM_024616	HPRD:08018	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_84204	chr5	175461764	175461853	+	6.77185	NA	Intergenic	Intergenic	27250	NR_103794	100996385	Hs.382347	NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
19-PTNLD28-TUMOR_peak_11140	chr1	236306856	236306954	+	6.77185	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	1073	NM_003272	7107	Hs.498160	NM_003272	HPRD:06878	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
19-PTNLD28-TUMOR_peak_87365	chr6	40747256	40747388	+	6.76877	NA	Intergenic	Intergenic	-192196	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_99239	chr8	75233579	75233864	+	6.76877	NA	promoter-TSS (NM_020647)	promoter-TSS (NM_020647)	-159	NM_020647	56704	Hs.657367	NM_020647	HPRD:07286	JPH1	JP-1|JP1	junctophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_44909	chr18	21109687	21109850	+	6.76877	NA	intron (NR_075075, intron 13 of 16)	intron (NR_075075, intron 13 of 16)	26334	NM_001276342	29919	Hs.464779	NM_013326	HPRD:12693	C18orf8	HsT2591|MIC1|Mic-1	chromosome 18 open reading frame 8	protein-coding
19-PTNLD28-TUMOR_peak_71798	chr3	152769895	152770185	+	6.76877	NA	Intergenic	Intergenic	-109961	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_63820	chr21	44512291	44512398	+	6.76877	NA	TTS (NM_001025204)	TTS (NM_001025204)	15344	NM_006758	7307	Hs.365116	NM_006758	HPRD:01871	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
19-PTNLD28-TUMOR_peak_31350	chr14	76044959	76045168	+	6.76877	NA	non-coding (NR_110552, exon 1 of 3)	non-coding (NR_110552, exon 1 of 3)	123	NM_017791	55640	Hs.509966	NM_017791	HPRD:12654	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	feline leukemia virus subgroup C cellular receptor family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_3181	chr1	46201335	46201466	+	6.76877	NA	intron (NM_001145349, intron 3 of 9)	AluJb|SINE|Alu	15085	NM_001145349	3652	Hs.744252	NM_005897	HPRD:00940	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_105523	chr9	116205578	116205740	+	6.76877	NA	Intergenic	L1PA7|LINE|L1	-1350	NM_144488	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_24655	chr12	56422725	56422844	+	6.76877	NA	intron (NM_022465, intron 5 of 7)	intron (NM_022465, intron 5 of 7)	8095	NM_022465	64375	Hs.553221	NM_022465	HPRD:05874	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4 (Eos)	protein-coding
19-PTNLD28-TUMOR_peak_62471	chr20	60784201	60784312	+	6.76877	NA	Intergenic	Intergenic	11067	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
19-PTNLD28-TUMOR_peak_1885	chr1	29077571	29077662	+	6.76877	NA	intron (NM_001172828, intron 3 of 3)	AluSz|SINE|Alu	14164	NM_001172828	51441	Hs.532286	NM_016258	HPRD:06587	YTHDF2	HGRG8|NY-REN-2	YTH domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_53206	chr2	67152357	67152591	+	6.76877	NA	intron (NR_110169, intron 1 of 4)	intron (NR_110169, intron 1 of 4)	-2852	NR_110600	102724321	Hs.146803	NR_110600		LOC102724321	-	uncharacterized LOC102724321	ncRNA
19-PTNLD28-TUMOR_peak_43257	chr17	71275193	71275355	+	6.76877	NA	Intergenic	Intergenic	-17255	NM_001129885	642843	Hs.534707	NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4-like	protein-coding
19-PTNLD28-TUMOR_peak_54894	chr2	111257674	111257796	+	6.76877	NA	Intergenic	Intergenic	-27083	NM_033514	96626	Hs.535619	NM_033514	HPRD:17277	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_58948	chr2	235080833	235081007	+	6.76877	NA	Intergenic	Intergenic	121574	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_99495	chr8	92331700	92331986	+	6.76877	NA	intron (NM_052832, intron 5 of 18)	intron (NM_052832, intron 5 of 18)	70327	NM_052832	115111	Hs.354013	NM_052832	HPRD:10533	SLC26A7	SUT2	solute carrier family 26 (anion exchanger), member 7	protein-coding
19-PTNLD28-TUMOR_peak_107499	chrX	9385078	9385208	+	6.76877	NA	Intergenic	Intergenic	-46192	NM_001139468	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_57626	chr2	197391724	197391818	+	6.76877	NA	intron (NM_020760, intron 1 of 28)	L1PA2|LINE|L1	65564	NM_020760	57520	Hs.654742	NM_020760	HPRD:17099	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_14222	chr10	73394633	73394799	+	6.76877	NA	intron (NM_001171930, intron 11 of 30)	intron (NM_001171930, intron 11 of 30)	84862	NM_001164375	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_91076	chr7	5466371	5466660	+	6.76491	NA	Intergenic	CpG-23978	-3338	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_41322	chr17	37894420	37894688	+	6.76454	NA	promoter-TSS (NM_001030002)	promoter-TSS (NM_001030002)	-22	NM_001030002	2886	Hs.86859	NM_005310	HPRD:03311	GRB7	-	growth factor receptor-bound protein 7	protein-coding
19-PTNLD28-TUMOR_peak_48317	chr19	24605790	24606055	+	6.76414	NA	Intergenic	ALR/Alpha|Satellite|centr	-259673	NR_003603	100101266	Hs.149312	NR_003603	ENSG00000268442	HAVCR1P1	-	hepatitis A virus cellular receptor 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_50016	chr19	51454246	51454347	+	6.76222	NA	intron (NM_001077492, intron 2 of 5)	intron (NM_001077492, intron 2 of 5)	2048	NM_012427	25818	Hs.50915	NM_012427	HPRD:05732	KLK5	KLK-L2|KLKL2|SCTE	kallikrein-related peptidase 5	protein-coding
19-PTNLD28-TUMOR_peak_87023	chr6	35465716	35465826	+	6.76222	NA	promoter-TSS (NM_003214)	promoter-TSS (NM_003214)	-910	NM_003214	7005	Hs.485205	NM_003214	HPRD:04411	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_38234	chr16	66546066	66546218	+	6.76153	NA	intron (NR_073520, intron 8 of 8)	intron (NR_073520, intron 8 of 8)	-35837	NR_109960	101927726	Hs.739193	NR_109960		BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52717	chr2	48920895	48921090	+	6.76006	NA	intron (NM_000233, intron 10 of 10)	intron (NM_000233, intron 10 of 10)	61888	NM_000233	3973	Hs.468490	NM_000233	HPRD:01073	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
19-PTNLD28-TUMOR_peak_37908	chr16	55090769	55090963	+	6.76006	NA	Intergenic	CpG	125755	NM_001252197	10265	Hs.435730	NM_005853	HPRD:08395	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
19-PTNLD28-TUMOR_peak_32294	chr14	105260520	105260627	+	6.75876	NA	promoter-TSS (NM_005163)	promoter-TSS (NM_005163)	-635	NM_005163	207	Hs.525622	NM_005163	HPRD:01261	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	v-akt murine thymoma viral oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_65138	chr22	31667208	31667310	+	6.75876	NA	intron (NM_001031801, intron 11 of 14)	intron (NM_001031801, intron 11 of 14)	21261	NM_001135911	113791	Hs.26670	NM_052880	HPRD:17518	PIK3IP1	HGFL|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49146	chr19	41701779	41701963	+	6.75876	NA	intron (NM_030622, intron 2 of 8)	L2b|LINE|L2	2756	NM_030622	29785	Hs.98370	NM_030622	HPRD:07481	CYP2S1	-	cytochrome P450, family 2, subfamily S, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_83493	chr5	157285382	157285485	+	6.75876	NA	intron (NM_001195556, intron 1 of 11)	intron (NM_001195556, intron 1 of 11)	750	NM_014666	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_59567	chr20	3749374	3749631	+	6.75876	NA	promoter-TSS (NR_047675)	promoter-TSS (NR_047675)	-467	NR_047675	54976	Hs.274422	NM_017874	HPRD:16648	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
19-PTNLD28-TUMOR_peak_26699	chr12	121147828	121148019	+	6.75876	NA	promoter-TSS (NM_001080533)	promoter-TSS (NM_001080533)	-315	NM_001080533	84747	Hs.127610	NM_032661	ENSG00000175970	UNC119B	POC7B	unc-119 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_63433	chr21	38281877	38282090	+	6.75876	NA	intron (NM_001242785, intron 6 of 11)	AluJr|SINE|Alu	56973	NM_001242784	3141	Hs.371350	NM_000411	HPRD:08360	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
19-PTNLD28-TUMOR_peak_80999	chr5	82151204	82151292	+	6.75876	NA	intron (NR_105016, intron 1 of 3)	MamRep605|Unknown|Unknown	4407	NR_105016	102546175		NR_105016		LINC01338	-	long intergenic non-protein coding RNA 1338	ncRNA
19-PTNLD28-TUMOR_peak_47131	chr19	9542291	9542459	+	6.75876	NA	intron (NM_001271314, intron 4 of 10)	LTR41B|LTR|ERVL	3879	NM_006631	10781	Hs.656185	NM_006631	HPRD:06882	ZNF266	HZF1	zinc finger protein 266	protein-coding
19-PTNLD28-TUMOR_peak_82135	chr5	132111326	132111503	+	6.75876	NA	intron (NM_001098813, intron 1 of 9)	intron (NM_001098813, intron 1 of 9)	1653	NM_001098812	23176	Hs.522057	NM_015146	ENSG00000164402	SEPT8	SEP2	septin 8	protein-coding
19-PTNLD28-TUMOR_peak_54284	chr2	96991225	96991360	+	6.75876	NA	promoter-TSS (NM_178495)	promoter-TSS (NM_178495)	223	NM_001163523	150771	Hs.65009	NM_178495	HPRD:13893	ITPRIPL1	KIAA1754L	inositol 1,4,5-trisphosphate receptor interacting protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_53861	chr2	86163605	86163781	+	6.75876	NA	Intergenic	Intergenic	47290	NR_110569	101928113	Hs.625888	NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_88139	chr6	56819487	56819648	+	6.75876	NA	promoter-TSS (NM_152731)	promoter-TSS (NM_152731)	-141	NM_001144769	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_19635	chr11	68938249	68938344	+	6.75876	NA	intron (NR_104161, intron 1 of 2)	MLT2A1|LTR|ERVL	734	NR_104161	338694	Hs.564235	NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
19-PTNLD28-TUMOR_peak_37339	chr16	31213983	31214102	+	6.75871	NA	promoter-TSS (NM_013258)	promoter-TSS (NM_013258)	55	NM_145182	29108	Hs.499094	NM_013258	HPRD:06020	PYCARD	ASC|CARD5|TMS|TMS-1|TMS1	PYD and CARD domain containing	protein-coding
19-PTNLD28-TUMOR_peak_79357	chr5	32586048	32586257	+	6.75871	NA	intron (NM_006713, intron 1 of 4)	CpG	547	NM_006713	10923	Hs.229641	NM_006713	HPRD:02737	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_80000	chr5	56110744	56110852	+	6.75788	NA	promoter-TSS (NM_005921)	promoter-TSS (NM_005921)	-102	NM_005921	4214	Hs.653654	NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_81797	chr5	122181592	122181777	+	6.75788	NA	intron (NM_014035, intron 1 of 6)	intron (NM_014035, intron 1 of 6)	524	NM_014035	28966	Hs.483200	NM_014035	HPRD:15413	SNX24	PRO1284	sorting nexin 24	protein-coding
19-PTNLD28-TUMOR_peak_13189	chr10	43697749	43698020	+	6.75691	NA	intron (NM_001282862, intron 3 of 12)	CpG	27303	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_43086	chr17	65822436	65822524	+	6.75691	NA	intron (NM_182641, intron 1 of 27)	intron (NM_182641, intron 1 of 27)	700	NM_182641	2186	Hs.444200	NM_004459	HPRD:03490	BPTF	FAC1|FALZ|NURF301	bromodomain PHD finger transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_61730	chr20	48476541	48476640	+	6.75290	NA	intron (NR_048539, intron 7 of 13)	intron (NR_048539, intron 7 of 13)	47340	NM_001260491	23315	Hs.444202	NM_015266	HPRD:18062	SLC9A8	NHE-8|NHE8	solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8	protein-coding
19-PTNLD28-TUMOR_peak_6574	chr1	149137295	149137401	+	6.75290	NA	Intergenic	Intergenic	-27623	NR_104217	101929780	Hs.534675	NR_104217		NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family, member 25, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12293	chr10	20820534	20820752	+	6.75290	NA	Intergenic	L1PA4|LINE|L1	-20256	NR_039822	100616383		NR_039822	miRBase:MI0017306	MIR4675	-	microRNA 4675	ncRNA
19-PTNLD28-TUMOR_peak_30819	chr14	65427558	65427807	+	6.75290	NA	intron (NM_198686, intron 1 of 6)	intron (NM_198686, intron 1 of 6)	11193	NM_198686	376267	Hs.512492	NM_198686	HPRD:11467	RAB15	-	RAB15, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_29151	chr13	113738118	113738253	+	6.75290	NA	intron (NM_001112732, intron 17 of 29)	intron (NM_001112732, intron 17 of 29)	-21917	NM_000131	2155	Hs.36989	NM_000131	HPRD:01965	F7	SPCA	coagulation factor VII (serum prothrombin conversion accelerator)	protein-coding
19-PTNLD28-TUMOR_peak_77596	chr4	152407119	152407278	+	6.75290	NA	intron (NM_001109977, intron 3 of 13)	MER1B|DNA|hAT-Charlie	76800	NM_001109977	729830	Hs.633810	NM_001109977	ENSG00000164142	FAM160A1	-	family with sequence similarity 160, member A1	protein-coding
19-PTNLD28-TUMOR_peak_61970	chr20	51040840	51041217	+	6.75290	NA	Intergenic	(CCTA)n|Simple_repeat|Simple_repeat	-196349	NR_110038	101927700	Hs.434465	NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
19-PTNLD28-TUMOR_peak_85730	chr6	17993785	17994010	+	6.75290	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-6043	NM_001243423	63971	Hs.94499	NM_022113	HPRD:09256	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
19-PTNLD28-TUMOR_peak_4197	chr1	67865879	67866054	+	6.75290	NA	Intergenic	AluSx|SINE|Alu	30157	NM_001018069	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91306	chr7	12536848	12536972	+	6.75290	NA	Intergenic	L1PA3|LINE|L1	-73293	NM_001112706	85477	Hs.633359	NM_033128	HPRD:11539	SCIN	-	scinderin	protein-coding
19-PTNLD28-TUMOR_peak_71715	chr3	150538929	150539533	+	6.75290	NA	Intergenic	SVA_D|Other|Other	-57968	NM_005067	6478	Hs.477959	NM_005067	HPRD:03737	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_78946	chr5	11778445	11778565	+	6.75290	NA	intron (NM_001288717, intron 1 of 20)	intron (NM_001288717, intron 1 of 20)	125650	NR_109988	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_108900	chrX	91007838	91007926	+	6.75290	NA	Intergenic	L1PA3|LINE|L1	-82578	NM_001168363	27328	Hs.655673	NM_014522	HPRD:02215	PCDH11X	PCDH-X|PCDH11|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
19-PTNLD28-TUMOR_peak_24388	chr12	53108159	53108570	+	6.75290	NA	Intergenic	CpG	-11117	NM_175078	374454	Hs.334989	NM_175078	HPRD:13934	KRT77	K1B|KRT1B	keratin 77	protein-coding
19-PTNLD28-TUMOR_peak_68598	chr3	58311353	58311794	+	6.75290	NA	Intergenic	AluJb|SINE|Alu	-7044	NM_001289098	54899	Hs.190544	NM_017771	HPRD:17936	PXK	MONaKA	PX domain containing serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_5990	chr1	120402339	120402472	+	6.75290	NA	Intergenic	Intergenic	-14902	NM_001047980	343505		NM_001047980		NBPF7	-	neuroblastoma breakpoint family, member 7	protein-coding
19-PTNLD28-TUMOR_peak_41941	chr17	45343402	45343519	+	6.75290	NA	intron (NM_000212, intron 1 of 14)	intron (NM_000212, intron 1 of 14)	12252	NM_000212	3690	Hs.218040	NM_000212	HPRD:01428	ITGB3	BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT	integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	protein-coding
19-PTNLD28-TUMOR_peak_36914	chr16	24647369	24647550	+	6.75290	NA	Intergenic	Intergenic	34924	NR_122072	400511	Hs.592028	NR_122072	HPRD:16985	LOC400511	-	uncharacterized LOC400511	ncRNA
19-PTNLD28-TUMOR_peak_16765	chr11	3648661	3648834	+	6.75290	NA	intron (NR_002720, intron 2 of 6)	intron (NR_002720, intron 2 of 6)	1057	NR_002720	7221	Hs.131910	NR_002720	ENSG00000182048	TRPC2	-	transient receptor potential cation channel, subfamily C, member 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_92295	chr7	44605132	44605322	+	6.75290	NA	3' UTR (NM_001257189, exon 13 of 13)	3' UTR (NM_001257189, exon 13 of 13)	8910	NM_019082	54606	Hs.654762	NM_019082	HPRD:12154	DDX56	DDX21|DDX26|NOH61	DEAD (Asp-Glu-Ala-Asp) box helicase 56	protein-coding
19-PTNLD28-TUMOR_peak_55496	chr2	124386664	124386848	+	6.75290	NA	Intergenic	L1PA3|LINE|L1	-396108	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_35477	chr15	100600828	100601059	+	6.75290	NA	intron (NM_139057, intron 15 of 21)	intron (NM_139057, intron 15 of 21)	-253811	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_60735	chr20	34286846	34286934	+	6.75076	NA	promoter-TSS (NM_080748)	promoter-TSS (NM_080748)	-342	NM_080748	140823	Hs.472564	NM_080748	HPRD:12774	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_62549	chr20	61569766	61569894	+	6.75076	NA	promoter-TSS (NM_033081)	promoter-TSS (NM_033081)	389	NM_017896	54994	Hs.353013	NM_017896		GID8	C20orf11|TWA1	GID complex subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_52633	chr2	47262308	47262515	+	6.74373	NA	intron (NM_001288955, intron 14 of 18)	intron (NM_001288955, intron 14 of 18)	-93417	NM_001171511	90411	Hs.662152	NM_139279	HPRD:09693	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
19-PTNLD28-TUMOR_peak_40297	chr17	15561334	15561502	+	6.73931	NA	intron (NM_006470, intron 3 of 8)	intron (NM_006470, intron 3 of 8)	24775	NM_006470	10626	Hs.123534	NM_006470	HPRD:15552	TRIM16	EBBP	tripartite motif containing 16	protein-coding
19-PTNLD28-TUMOR_peak_23928	chr12	46385724	46385942	+	6.73931	NA	Intergenic	CpG	-1432	NM_004719	9169	Hs.210367	NM_004719		SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD-associated factor 11	protein-coding
19-PTNLD28-TUMOR_peak_101849	chr9	11357	11513	+	6.73395	NA	promoter-TSS (NR_051986)	promoter-TSS (NR_051986)	-552	NR_051986	100287596	Hs.719844	NR_051986		DDX11L5	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5	pseudo
19-PTNLD28-TUMOR_peak_62215	chr20	55434182	55434270	+	6.73339	NA	Intergenic	L2b|LINE|L2	229868	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_1531	chr1	24476455	24476544	+	6.73339	NA	Intergenic	Intergenic	-6724	NM_021258	58985	Hs.110915	NM_021258	HPRD:16108	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_8560	chr1	180496522	180496652	+	6.73339	NA	Intergenic	L2b|LINE|L2	-24565	NM_032360	84320	Hs.200051	NM_032360	HPRD:12416	ACBD6	-	acyl-CoA binding domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_12786	chr10	31607890	31607998	+	6.73339	NA	promoter-TSS (NM_001174096)	promoter-TSS (NM_001174096)	80	NR_024284	220930	Hs.372654	NR_024284		ZEB1-AS1	-	ZEB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90695	chr6	171026252	171026350	+	6.73326	NA	Intergenic	L1ME1|LINE|L1	-132521	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_81887	chr5	124820040	124820181	+	6.73326	NA	Intergenic	Intergenic	-8844	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
19-PTNLD28-TUMOR_peak_74607	chr4	15656667	15656798	+	6.73326	NA	intron (NM_012161, intron 1 of 10)	CpG	303	NR_036464	26234	Hs.643433	NM_012161	HPRD:05739	FBXL5	FBL4|FBL5|FLR1	F-box and leucine-rich repeat protein 5	protein-coding
19-PTNLD28-TUMOR_peak_24445	chr12	53456136	53456270	+	6.73326	NA	exon (NM_198316, exon 24 of 29)	exon (NM_198316, exon 24 of 29)	5475	NR_106815	102466193		NR_106815		MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
19-PTNLD28-TUMOR_peak_52479	chr2	44589664	44589791	+	6.73326	NA	promoter-TSS (NM_001171617)	promoter-TSS (NM_001171617)	684	NM_024766	79823	Hs.468349	NM_024766	HPRD:08028	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_70225	chr3	123337755	123337863	+	6.73269	NA	intron (NM_053025, intron 32 of 33)	intron (NM_053025, intron 32 of 33)	1721	NM_053031	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_85466	chr6	13267654	13267774	+	6.73269	NA	intron (NM_030948, intron 10 of 14)	intron (NM_030948, intron 10 of 14)	28104	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_86891	chr6	33780599	33780700	+	6.73269	NA	Intergenic	Intergenic	-8856	NM_002418	4295	Hs.2813	NM_002418	HPRD:15931	MLN	-	motilin	protein-coding
19-PTNLD28-TUMOR_peak_53919	chr2	87184520	87184635	+	6.73269	NA	intron (NM_001024457, intron 4 of 22)	L2|LINE|L2	39839	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_5409	chr1	110261245	110261336	+	6.73269	NA	TTS (NM_000851)	TTS (NM_000851)	6426	NM_000851	2949	Hs.75652	NM_000851	HPRD:00711	GSTM5	GSTM5-5|GTM5	glutathione S-transferase mu 5	protein-coding
19-PTNLD28-TUMOR_peak_71224	chr3	139174827	139174915	+	6.73269	NA	intron (NM_004164, intron 2 of 3)	intron (NM_004164, intron 2 of 3)	20481	NM_004164	5948	Hs.655516	NM_004164	HPRD:07184	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2, cellular	protein-coding
19-PTNLD28-TUMOR_peak_38843	chr16	78495453	78495644	+	6.73269	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	362238	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_34563	chr15	75591476	75591567	+	6.73269	NA	Intergenic	Intergenic	16339	NM_001145224	653643	Hs.672474	NM_001145224		GOLGA6D	-	golgin A6 family, member D	protein-coding
19-PTNLD28-TUMOR_peak_35677	chr16	908648	908859	+	6.73269	NA	intron (NR_033645, intron 11 of 11)	CpG	53310	NM_001013638	388199	Hs.528461	NM_001013638	HPRD:18379	PRR25	gs64	proline rich 25	protein-coding
19-PTNLD28-TUMOR_peak_37102	chr16	29168451	29168545	+	6.73269	NA	Intergenic	LTR37A|LTR|ERV1	82335	NR_003369	653390	Hs.720348	NR_003369	ENSG00000103472	RRN3P2	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_60482	chr20	30828449	30828765	+	6.73269	NA	Intergenic	MER113|DNA|hAT-Charlie	32911	NM_015352	23509	Hs.472409	NM_015352	HPRD:06319	POFUT1	DDD2|FUT12|O-FUT|O-Fuc-T|O-FucT-1|OFUCT1	protein O-fucosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_62336	chr20	56651238	56651345	+	6.73269	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-74692	NM_178456	128602	Hs.43977	NM_178456	HPRD:12787	C20orf85	LLC1|bA196N14.1	chromosome 20 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_72015	chr3	158489888	158490046	+	6.73269	NA	Intergenic	Intergenic	-29748	NR_110328	64747	Hs.58663	NM_022736	HPRD:07851	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_103861	chr9	75747008	75747173	+	6.73269	NA	Intergenic	Intergenic	-19691	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_109161	chrX	109561104	109561536	+	6.73269	NA	promoter-TSS (NM_015365)	promoter-TSS (NM_015365)	60	NM_015365	9949	Hs.656243	NM_015365	HPRD:02182	AMMECR1	AMMERC1	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_97772	chr8	26307753	26307864	+	6.73176	NA	Intergenic	Intergenic	63675	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_21510	chr11	118494087	118494200	+	6.73108	NA	intron (NM_001144759, intron 4 of 20)	intron (NM_001144759, intron 4 of 20)	15837	NM_001144758	23187	Hs.504062	NM_015157	HPRD:15128	PHLDB1	LL5A	pleckstrin homology-like domain, family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_16588	chr11	1595581	1595830	+	6.73108	NA	intron (NR_021489, intron 1 of 1)	intron (NR_021489, intron 1 of 1)	1734	NR_021489	338651	Hs.633229	NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18047	chr11	35161202	35161352	+	6.73073	NA	intron (NM_001202555, intron 1 of 9)	intron (NM_001202555, intron 1 of 9)	860	NM_001202556	960	Hs.502328	NM_000610	HPRD:00115	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
19-PTNLD28-TUMOR_peak_64587	chr22	22128971	22129294	+	6.73073	NA	intron (NM_002745, intron 6 of 8)	intron (NM_002745, intron 6 of 8)	-39061	NM_013313	29799	Hs.517436	NM_013313	HPRD:16277	YPEL1	-	yippee-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_56816	chr2	168639787	168639991	+	6.73073	NA	Intergenic	Intergenic	-35293	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_106320	chr9	131710729	131710842	+	6.73073	NA	promoter-TSS (NM_014908)	promoter-TSS (NM_014908)	-773	NM_014908	22845	Hs.531563	NM_014908	HPRD:15525	DOLK	CDG1M|DK|DK1|SEC59|TMEM15	dolichol kinase	protein-coding
19-PTNLD28-TUMOR_peak_7072	chr1	154439443	154439537	+	6.73073	NA	3' UTR (NM_000565, exon 10 of 10)	3' UTR (NM_000565, exon 10 of 10)	35036	NM_001010846	126669	Hs.591481	NM_001010846	HPRD:17293	SHE	-	Src homology 2 domain containing E	protein-coding
19-PTNLD28-TUMOR_peak_106488	chr9	134378891	134379000	+	6.73073	NA	intron (NM_001136113, intron 1 of 19)	intron (NM_001136113, intron 1 of 19)	656	NM_001077365	10585	Hs.522449	NM_007171	HPRD:06305	POMT1	LGMD2K|MDDGA1|MDDGB1|MDDGC1|RT	protein-O-mannosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_51026	chr2	10081739	10082054	+	6.73073	NA	Intergenic	Intergenic	-9896	NM_198182	29841	Hs.418493	NM_198182	HPRD:18176	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead-like 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_32831	chr15	30904453	30904593	+	6.72943	NA	intron (NM_001282490, intron 13 of 18)	intron (NM_001282490, intron 13 of 18)	8290	NM_001282490	728498		NM_001282490		GOLGA8H	GOLGA6L11	golgin A8 family, member H	protein-coding
19-PTNLD28-TUMOR_peak_87227	chr6	37666852	37666958	+	6.72943	NA	Intergenic	CpG-22095	-1139	NM_153487	266727	Hs.437993	NM_153487	HPRD:14374	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
19-PTNLD28-TUMOR_peak_109982	chrX	153686537	153686713	+	6.72943	NA	promoter-TSS (NM_017514)	promoter-TSS (NM_017514)	4	NM_017514	55558	Hs.632839	NM_017514	HPRD:02062	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
19-PTNLD28-TUMOR_peak_27299	chr12	133337280	133337502	+	6.72943	NA	intron (NM_015114, intron 1 of 12)	MER21B|LTR|ERVL	1083	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_55621	chr2	129494299	129494398	+	6.72879	NA	Intergenic	Intergenic	-127826	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_2225	chr1	33793648	33793747	+	6.72879	NA	intron (NM_004427, intron 6 of 6)	intron (NM_004427, intron 6 of 6)	4396	NR_037400	100500853		NR_037400		MIR3605	-	microRNA 3605	ncRNA
19-PTNLD28-TUMOR_peak_90740	chr7	475841	476283	+	6.72879	NA	Intergenic	Intergenic	56671	NR_033960	442497	Hs.704269	NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
19-PTNLD28-TUMOR_peak_95228	chr7	129485892	129486007	+	6.72879	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-71095	NR_029615	406959		NR_029615	miRBase:MI0000273	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
19-PTNLD28-TUMOR_peak_10165	chr1	221100907	221101242	+	6.72879	NA	Intergenic	Intergenic	-47592	NR_046901	100873924	Hs.645593	NR_046901		HLX-AS1	-	HLX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11579	chr10	122293	122658	+	6.72879	NA	Intergenic	CpG	-27297	NM_177987	347688	Hs.532659	NM_177987		TUBB8	bA631M21.2	tubulin, beta 8 class VIII	protein-coding
19-PTNLD28-TUMOR_peak_84194	chr5	175288887	175289019	+	6.72879	NA	intron (NM_006650, intron 2 of 4)	L2c|LINE|L2	-9548	NM_001008220	10814	Hs.193235	NM_006650	HPRD:09234	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
19-PTNLD28-TUMOR_peak_79808	chr5	50263607	50263695	+	6.72879	NA	Intergenic	Intergenic	2370	NR_104653	100287592	Hs.519298	NR_104653		LOC100287592	-	uncharacterized LOC100287592	ncRNA
19-PTNLD28-TUMOR_peak_59264	chr2	241614899	241615053	+	6.72879	NA	TTS (NM_001102467)	TTS (NM_001102467)	7341	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
19-PTNLD28-TUMOR_peak_86808	chr6	33216181	33216310	+	6.72720	NA	Intergenic	CpG	-1068	NR_044997	414765	Hs.675862	NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_9708	chr1	206281532	206281825	+	6.72720	NA	intron (NM_001007544, intron 1 of 5)	MIR3|SINE|MIR	6969	NM_001007544	440712	Hs.662248	NM_001007544		C1orf186	-	chromosome 1 open reading frame 186	protein-coding
19-PTNLD28-TUMOR_peak_18445	chr11	47208733	47209024	+	6.72115	NA	promoter-TSS (NM_016223)	promoter-TSS (NM_016223)	-868	NM_001184974	29763	Hs.334639	NM_016223	HPRD:05937	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
19-PTNLD28-TUMOR_peak_84886	chr6	3390298	3390403	+	6.72030	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	54897	NR_104448	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_86098	chr6	26172556	26172722	+	6.71924	NA	Intergenic	AluSc8|SINE|Alu	-11385	NM_003523	8344	Hs.534369	NM_003523	HPRD:11901	HIST1H2BE	H2B.h|H2B/h|H2BFH|dJ221C16.8	histone cluster 1, H2be	protein-coding
19-PTNLD28-TUMOR_peak_57029	chr2	174518933	174519068	+	6.71924	NA	Intergenic	LTR33|LTR|ERVL	299439	NM_145810	83879	Hs.470654	NM_031942	HPRD:09874	CDCA7	JPO1	cell division cycle associated 7	protein-coding
19-PTNLD28-TUMOR_peak_22067	chr11	128760444	128760641	+	6.71924	NA	promoter-TSS (NM_000890)	promoter-TSS (NM_000890)	-771	NM_000890	3762	Hs.444595	NM_000890		KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding
19-PTNLD28-TUMOR_peak_101628	chr8	144513983	144514102	+	6.71894	NA	Intergenic	Intergenic	-1440	NM_201589	389692	Hs.521914	NM_201589	HPRD:14346	MAFA	RIPE3b1|hMafA	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A	protein-coding
19-PTNLD28-TUMOR_peak_558	chr1	8963702	8963800	+	6.71381	NA	Intergenic	MER21A|LTR|ERVL	-24600	NM_001428	2023	Hs.517145	NM_001428	HPRD:01400	ENO1	ENO1L1|MPB1|NNE|PPH	enolase 1, (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_73965	chr4	3294923	3295016	+	6.71381	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-20905	NM_198229	6002	Hs.527061	NM_002926	HPRD:03943	RGS12	-	regulator of G-protein signaling 12	protein-coding
19-PTNLD28-TUMOR_peak_88479	chr6	80574216	80574359	+	6.71097	NA	intron (NM_001243308, intron 1 of 3)	LTR75B|LTR|ERVL	5850	NM_001243308	89758	Hs.288213	NM_001243308		C6orf7	-	chromosome 6 open reading frame 7	protein-coding
19-PTNLD28-TUMOR_peak_57692	chr2	199305674	199305795	+	6.71097	NA	Intergenic	MER51A|LTR|ERV1	-65913	NR_110267	101927619	Hs.632942	NR_110267		LOC101927619	-	uncharacterized LOC101927619	ncRNA
19-PTNLD28-TUMOR_peak_7992	chr1	167641053	167641309	+	6.71097	NA	intron (NM_052862, intron 1 of 6)	L2a|LINE|L2	41707	NM_052862	92241	Hs.493867	NM_052862	HPRD:10077	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33743	chr15	58791515	58791612	+	6.71097	NA	promoter-TSS (NR_120338)	promoter-TSS (NR_120338)	-629	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_9992	chr1	212731723	212731969	+	6.71097	NA	Intergenic	CpG	-6830	NM_001030287	467	Hs.460	NM_001674	HPRD:04395	ATF3	-	activating transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_75365	chr4	55780511	55780634	+	6.71097	NA	Intergenic	Intergenic	211190	NM_002253	3791	Hs.479756	NM_002253	HPRD:01867	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor (a type III receptor tyrosine kinase)	protein-coding
19-PTNLD28-TUMOR_peak_35478	chr15	100601301	100601394	+	6.71097	NA	intron (NM_139057, intron 15 of 21)	intron (NM_139057, intron 15 of 21)	-254215	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_62861	chr21	18376126	18376476	+	6.71097	NA	Intergenic	Intergenic	413744	NR_029694	406912		NR_029694	miRBase:MI0000470	MIR125B2	MIRN125B2	microRNA 125b-2	ncRNA
19-PTNLD28-TUMOR_peak_22017	chr11	127901583	127901689	+	6.71097	NA	Intergenic	Intergenic	490569	NM_005238	2113	Hs.369438	NM_005238	HPRD:01260	ETS1	ETS-1|EWSR2|p54	v-ets avian erythroblastosis virus E26 oncogene homolog 1	protein-coding
19-PTNLD28-TUMOR_peak_50975	chr2	9472051	9472160	+	6.71097	NA	intron (NM_003887, intron 7 of 27)	intron (NM_003887, intron 7 of 27)	91538	NM_004763	9270	Hs.467662	NM_004763	HPRD:06194	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_80233	chr5	63257662	63257833	+	6.71097	NA	5' UTR (NM_000524, exon 1 of 1)	5' UTR (NM_000524, exon 1 of 1)	372	NM_000524	3350	Hs.247940	NM_000524		HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_35193	chr15	90756742	90756872	+	6.71097	NA	intron (NM_020210, intron 2 of 14)	intron (NM_020210, intron 2 of 14)	12245	NM_198925	10509	Hs.474935	NM_020210	HPRD:10217	SEMA4B	SEMAC|SemC	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
19-PTNLD28-TUMOR_peak_65235	chr22	33698150	33698257	+	6.71097	NA	intron (NM_004737, intron 13 of 15)	intron (NM_004737, intron 13 of 15)	134452	NR_039921	100616295		NR_039921		MIR4764	-	microRNA 4764	ncRNA
19-PTNLD28-TUMOR_peak_59131	chr2	239029332	239029666	+	6.71097	NA	intron (NM_194312, intron 5 of 8)	intron (NM_194312, intron 5 of 8)	-17864	NM_198582	377007	Hs.591595	NM_198582	HPRD:13472	KLHL30	-	kelch-like family member 30	protein-coding
19-PTNLD28-TUMOR_peak_78993	chr5	13959711	13959912	+	6.71097	NA	Intergenic	AluSq2|SINE|Alu	-15222	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_62213	chr20	55394356	55394549	+	6.71097	NA	Intergenic	MER20|DNA|hAT-Charlie	190094	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_26712	chr12	121409671	121409778	+	6.71097	NA	non-coding (NR_024345, exon 1 of 1)	non-coding (NR_024345, exon 1 of 1)	371	NR_024345	283460	Hs.612351	NM_178513	ENSG00000272214	HNF1A-AS1	C12orf27|NCRNA00262	HNF1A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90964	chr7	2973860	2973965	+	6.71097	NA	intron (NM_032415, intron 10 of 24)	intron (NM_032415, intron 10 of 24)	-89953	NM_001293092	2768	Hs.487341	NM_007353	HPRD:05093	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
19-PTNLD28-TUMOR_peak_80437	chr5	68534791	68534938	+	6.71052	NA	intron (NM_001799, intron 2 of 11)	L1ME3C|LINE|L1	4242	NM_001799	1022	Hs.184298	NM_001799	HPRD:15993	CDK7	CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin-dependent kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_89418	chr6	128842321	128842426	+	6.71052	NA	promoter-TSS (NM_002844)	promoter-TSS (NM_002844)	-554	NM_001291984	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_72223	chr3	169379996	169380268	+	6.71052	NA	intron (NM_004991, intron 1 of 16)	CpG	1431	NM_001205194	2122	Hs.744090	NM_004991	HPRD:01310	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
19-PTNLD28-TUMOR_peak_24812	chr12	58258302	58258500	+	6.71052	NA	Intergenic	Intergenic	-17654	NM_005730	10106	Hs.524530	NM_005730	HPRD:12281	CTDSP2	OS4|PSR2|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_38241	chr16	66638788	66638971	+	6.71052	NA	intron (NR_037619, intron 1 of 4)	CpG	245	NR_037619	123920	Hs.298198	NM_144601	HPRD:16259	CMTM3	BNAS2|CKLFSF3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_50661	chr1_gl000192_random	191152	191339	+	6.70805	NA	intron (NR_103556, intron 33 of 45)	intron (NR_103556, intron 33 of 45)	216265	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_63913	chr21	45432411	45432938	+	6.70805	NA	intron (NM_003274, intron 1 of 22)	CpG	468	NM_003274	7109	Hs.126221	NM_003274	HPRD:03656	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
19-PTNLD28-TUMOR_peak_106467	chr9	133972329	133972434	+	6.70805	NA	intron (NR_033701, intron 2 of 5)	CpG-27176	518	NM_001185096	83543	Hs.4944	NM_031426	HPRD:12967	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_25261	chr12	71148368	71148536	+	6.70805	NA	promoter-TSS (NM_130846)	promoter-TSS (NM_130846)	-64	NM_130846	5801	Hs.506076	NM_002849	HPRD:04169	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase, receptor type, R	protein-coding
19-PTNLD28-TUMOR_peak_83540	chr5	158526216	158526355	+	6.70805	NA	intron (NM_182708, intron 1 of 14)	CpG	503	NM_001290360	1879	Hs.573143	NM_024007	HPRD:01256	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
19-PTNLD28-TUMOR_peak_104064	chr9	82591483	82591925	+	6.70805	NA	intron (NR_121212, intron 2 of 4)	intron (NR_121212, intron 2 of 4)	1766	NR_121212	101927477	Hs.571630	NR_121212		LINC01507	-	long intergenic non-protein coding RNA 1507	ncRNA
19-PTNLD28-TUMOR_peak_25900	chr12	104323167	104323310	+	6.70371	NA	promoter-TSS (NR_037425)	promoter-TSS (NR_037425)	751	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	GNN	-	Grp94 neighboring nucleotidase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_54	chr1	693351	693457	+	6.70281	NA	Intergenic	AluJr4|SINE|Alu	20664	NR_033908	100288069	Hs.527521	NR_033908	ENSG00000228327	LOC100288069	-	uncharacterized LOC100288069	ncRNA
19-PTNLD28-TUMOR_peak_67840	chr3	45162008	45162096	+	6.70281	NA	intron (NM_022842, intron 1 of 8)	intron (NM_022842, intron 1 of 8)	25862	NM_022842	64866	Hs.476093	NM_022842	HPRD:16696	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81799	chr5	122185526	122185716	+	6.70281	NA	intron (NM_014035, intron 1 of 6)	intron (NM_014035, intron 1 of 6)	4461	NM_014035	28966	Hs.483200	NM_014035	HPRD:15413	SNX24	PRO1284	sorting nexin 24	protein-coding
19-PTNLD28-TUMOR_peak_53960	chr2	87903674	87903764	+	6.70256	NA	Intergenic	Intergenic	-25555	NR_039634	100616499		NR_039634	miRBase:MI0016775	MIR4435-1	-	microRNA 4435-1	ncRNA
19-PTNLD28-TUMOR_peak_72210	chr3	168747824	168747976	+	6.70256	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	116193	NM_001105077	2122	Hs.744090	NM_004991	HPRD:01310	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
19-PTNLD28-TUMOR_peak_23276	chr12	16502112	16502261	+	6.70256	NA	intron (NM_145791, intron 1 of 3)	intron (NM_145791, intron 1 of 3)	1474	NR_048547	4257	Hs.389700	NM_020300	HPRD:00705	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding
19-PTNLD28-TUMOR_peak_67580	chr3	38500800	38500921	+	6.70256	NA	intron (NM_001106, intron 1 of 10)	intron (NM_001106, intron 1 of 10)	-4549	NR_028389	100128640	Hs.570596	NR_028389	ENSG00000229589	ACVR2B-AS1	-	ACVR2B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31776	chr14	93478262	93478400	+	6.70256	NA	intron (NM_001142593, intron 4 of 10)	intron (NM_001142593, intron 4 of 10)	-55466	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78600	chr5	611852	611977	+	6.70256	NA	promoter-TSS (NM_018140)	promoter-TSS (NM_018140)	411	NR_103444	100996325	Hs.575249	NR_103444		LOC100996325	-	uncharacterized LOC100996325	ncRNA
19-PTNLD28-TUMOR_peak_32932	chr15	32905896	32905994	+	6.69960	NA	Intergenic	AluSg7|SINE|Alu	-1400	NM_001286479	9824	Hs.591130	NM_014783	HPRD:10656	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding
19-PTNLD28-TUMOR_peak_103756	chr9	73033120	73033498	+	6.69811	NA	Intergenic	MER5A|DNA|hAT-Charlie	-3736	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_5731	chr1	115880784	115880872	+	6.69706	NA	promoter-TSS (NM_002506)	promoter-TSS (NM_002506)	29	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_10787	chr1	230511642	230511736	+	6.69706	NA	intron (NM_001258311, intron 1 of 6)	intron (NM_001258311, intron 1 of 6)	49985	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_60904	chr20	36430439	36430557	+	6.69706	NA	intron (NM_001281495, intron 11 of 16)	L1MB8|LINE|L1	-101001	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_41378	chr17	38514861	38514949	+	6.69706	NA	Intergenic	Intergenic	6040	NM_152219	125111	Hs.444663	NM_152219		GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein, delta 3, 31.9kDa	protein-coding
19-PTNLD28-TUMOR_peak_82707	chr5	140762185	140762680	+	6.69706	NA	5' UTR (NM_018920, exon 1 of 4)	5' UTR (NM_018920, exon 1 of 4)	126	NM_032087	56108	Hs.368160	NM_018920	HPRD:09384	PCDHGA7	PCDH-GAMMA-A7	protocadherin gamma subfamily A, 7	protein-coding
19-PTNLD28-TUMOR_peak_50220	chr19	54048791	54048979	+	6.69706	NA	intron (NM_001253798, intron 2 of 6)	intron (NM_001253798, intron 2 of 6)	6843	NM_001253800	55422	Hs.185674	NM_018555	HPRD:05827	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
19-PTNLD28-TUMOR_peak_76589	chr4	111008508	111008807	+	6.69706	NA	intron (NM_001130721, intron 3 of 4)	intron (NM_001130721, intron 3 of 4)	111114	NM_001130721	79071	Hs.412939	NM_024090	HPRD:13269	ELOVL6	FACE|FAE|LCE	ELOVL fatty acid elongase 6	protein-coding
19-PTNLD28-TUMOR_peak_5428	chr1	110435281	110435404	+	6.69706	NA	Intergenic	Intergenic	-17891	NM_000757	1435	Hs.173894	NM_000757	HPRD:00388	CSF1	CSF-1|MCSF	colony stimulating factor 1 (macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_76615	chr4	111558187	111558322	+	6.69706	NA	5' UTR (NM_153426, exon 2 of 6)	5' UTR (NM_153426, exon 2 of 6)	5025	NM_153427	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_40224	chr17	11924405	11924594	+	6.69706	NA	intron (NM_003010, intron 1 of 10)	CpG	364	NM_003010	6416	Hs.514681	NM_003010	HPRD:03213	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_32272	chr14	104653920	104654063	+	6.69702	NA	Intergenic	Intergenic	48931	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
19-PTNLD28-TUMOR_peak_19590	chr11	68198061	68198159	+	6.69702	NA	intron (NM_001291902, intron 17 of 22)	L1MC|LINE|L1	-30076	NM_001164163	55291	Hs.503022	NM_018312	HPRD:10703	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6, regulatory subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_10465	chr1	226160956	226161046	+	6.69702	NA	Intergenic	Intergenic	26065	NM_152608	163859	Hs.520192	NM_152608	HPRD:08180	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_83744	chr5	167829000	167829152	+	6.69702	NA	intron (NM_015238, intron 5 of 22)	intron (NM_015238, intron 5 of 22)	-84387	NM_002887	5917	Hs.654907	NM_002887	HPRD:00142	RARS	ArgRS|DALRD1	arginyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_101048	chr8	132870315	132870672	+	6.69702	NA	Intergenic	Intergenic	-45863	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_54812	chr2	110400652	110400745	+	6.69702	NA	Intergenic	AluJr|SINE|Alu	28787	NM_023016	65124	Hs.355455	NM_023016	HPRD:08643	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
19-PTNLD28-TUMOR_peak_70623	chr3	128218841	128218944	+	6.69702	NA	intron (NR_125398, intron 2 of 2)	L2b|LINE|L2	-6862	NM_032638	2624	Hs.367725	NM_032638	HPRD:00673	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_97466	chr8	20238409	20238502	+	6.69702	NA	Intergenic	Intergenic	105171	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3801	chr1	58907397	58907511	+	6.69702	NA	Intergenic	Intergenic	104992	NM_145243	115209	Hs.425769	NM_145243	HPRD:14879	OMA1	2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase	OMA1 zinc metallopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_99042	chr8	67383389	67383521	+	6.69702	NA	Intergenic	AluJb|SINE|Alu	-22036	NM_152765	254778	Hs.268869	NM_152765	HPRD:14565	C8orf46	-	chromosome 8 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_36666	chr16	19918895	19919029	+	6.69702	NA	Intergenic	Intergenic	-22811	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_81618	chr5	113112438	113112536	+	6.69702	NA	Intergenic	HERV4_I-int|LTR|ERV1	263096	NM_022828	64848	Hs.231942	NM_022828	HPRD:11690	YTHDC2	CAHL	YTH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25439	chr12	80395462	80395582	+	6.69625	NA	Intergenic	Intergenic	-66287	NM_001244990	4659	Hs.49582	NM_002480	HPRD:03606	PPP1R12A	M130|MBS|MYPT1	protein phosphatase 1, regulatory subunit 12A	protein-coding
19-PTNLD28-TUMOR_peak_17665	chr11	22942645	22942733	+	6.69625	NA	Intergenic	MER20|DNA|hAT-Charlie	-60717	NM_001195637	100500938	Hs.555029	NM_001195637	ENSG00000255359	CCDC179	-	coiled-coil domain containing 179	protein-coding
19-PTNLD28-TUMOR_peak_43298	chr17	72256190	72256314	+	6.69625	NA	intron (NM_032646, intron 13 of 13)	intron (NM_032646, intron 13 of 13)	11747	NM_052869	94015	Hs.27935	NM_032646	HPRD:16394	TTYH2	C17orf29	tweety family member 2	protein-coding
19-PTNLD28-TUMOR_peak_51388	chr2	19092200	19092301	+	6.69625	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-321404	NM_001199088	93034	Hs.744358	NM_033253	HPRD:11405	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
19-PTNLD28-TUMOR_peak_91626	chr7	23584653	23584768	+	6.69625	NA	Intergenic	MER20|DNA|hAT-Charlie	-13050	NM_013293	29896	Hs.445652	NM_013293	HPRD:04096	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_58721	chr2	228631127	228631280	+	6.69625	NA	Intergenic	Intergenic	-47355	NM_004591	6364	Hs.75498	NM_004591	HPRD:03571	CCL20	CKb4|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	chemokine (C-C motif) ligand 20	protein-coding
19-PTNLD28-TUMOR_peak_84911	chr6	3568953	3569193	+	6.69625	NA	Intergenic	Intergenic	-112280	NM_015482	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_20791	chr11	100355828	100355955	+	6.69625	NA	Intergenic	L1MEc|LINE|L1	-202516	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_40902	chr17	28857760	28857927	+	6.69625	NA	Intergenic	Intergenic	-28741	NM_015594	26083	Hs.241421	NM_015594	HPRD:13162	TBC1D29	-	TBC1 domain family, member 29	protein-coding
19-PTNLD28-TUMOR_peak_11201	chr1	237922713	237922865	+	6.69625	NA	intron (NM_001035, intron 82 of 104)	intron (NM_001035, intron 82 of 104)	-102686	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109186	chrX	110726479	110726600	+	6.69625	NA	Intergenic	Intergenic	-28351	NR_033974	401613	Hs.98581	NR_033974	ENSG00000260802	LINC00890	DKFZp686D0853	long intergenic non-protein coding RNA 890	ncRNA
19-PTNLD28-TUMOR_peak_79990	chr5	55911669	55911790	+	6.69625	NA	Intergenic	Intergenic	-9670	NM_001287053	101928448	Hs.208052	NM_001287053		LOC101928448	-	uncharacterized LOC101928448	protein-coding
19-PTNLD28-TUMOR_peak_22988	chr12	9791262	9791357	+	6.69625	NA	intron (NR_046448, intron 1 of 4)	MER61-int|LTR|ERV1	-4155	NR_046449	374443	Hs.569124	NR_002814	ENSG00000256594	LOC374443	-	C-type lectin domain family 2, member D pseudogene	pseudo
19-PTNLD28-TUMOR_peak_11670	chr10	2970566	2970702	+	6.69625	NA	Intergenic	Intergenic	-139078	NM_002627	5214	Hs.26010	NM_002627	HPRD:01384	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
19-PTNLD28-TUMOR_peak_91943	chr7	33525547	33525650	+	6.69625	NA	intron (NM_198428, intron 19 of 22)	intron (NM_198428, intron 19 of 22)	356446	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_11179	chr1	237176397	237176593	+	6.69625	NA	Intergenic	Intergenic	-8777	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
19-PTNLD28-TUMOR_peak_15696	chr10	114694059	114694162	+	6.69625	NA	Intergenic	Intergenic	-15899	NM_001198531	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_56231	chr2	149874013	149874121	+	6.69625	NA	intron (NM_004522, intron 25 of 25)	intron (NM_004522, intron 25 of 25)	-20914	NM_177964	130576	Hs.357567	NM_177964	HPRD:14045	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_27663	chr13	30681723	30681867	+	6.69625	NA	Intergenic	Intergenic	171127	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_23864	chr12	43602440	43602606	+	6.69625	NA	Intergenic	Intergenic	343201	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_62925	chr21	21350641	21350825	+	6.69625	NA	Intergenic	LTR16B2|LTR|ERVL	824693	NR_024090	387486	Hs.576551	NR_024090	ENSG00000224924	LINC00320	C21orf131|NCRNA00320|PRED14	long intergenic non-protein coding RNA 320	ncRNA
19-PTNLD28-TUMOR_peak_99941	chr8	104992621	104992790	+	6.69625	NA	intron (NM_001100117, intron 16 of 23)	L1MA2|LINE|L1	161289	NM_001282881	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_95011	chr7	123430664	123430752	+	6.69625	NA	promoter-TSS (NR_125730).10	promoter-TSS (NR_125730).10	57	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_107929	chrX	37431089	37431177	+	6.69625	NA	exon (NM_001170331, exon 1 of 5)	exon (NM_001170331, exon 1 of 5)	311	NM_198511	347404	Hs.521932	NM_198511	HPRD:13957	LANCL3	-	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding
19-PTNLD28-TUMOR_peak_28647	chr13	90108168	90108256	+	6.69625	NA	Intergenic	MLT2F|LTR|ERVL	108455	NR_046991	100874139	Hs.742173	NR_046991		LINC00353	-	long intergenic non-protein coding RNA 353	ncRNA
19-PTNLD28-TUMOR_peak_18184	chr11	42546129	42546414	+	6.69625	NA	Intergenic	Intergenic	-271031	NR_038309	100507205	Hs.99310	NR_038309		LOC100507205	-	uncharacterized LOC100507205	ncRNA
19-PTNLD28-TUMOR_peak_11204	chr1	238014686	238014777	+	6.69625	NA	Intergenic	Intergenic	-10744	NR_027247	100130331	Hs.661736	NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
19-PTNLD28-TUMOR_peak_77347	chr4	142575351	142575491	+	6.69625	NA	intron (NR_037840, intron 1 of 7)	LTR16A|LTR|ERVL	17672	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_99215	chr8	74395885	74396090	+	6.69625	NA	intron (NM_001164381, intron 12 of 13)	intron (NM_001164381, intron 12 of 13)	63678	NR_038406	100128126	Hs.679921	NR_038406	ENSG00000253302	STAU2-AS1	-	STAU2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_71131	chr3	137620891	137620979	+	6.69625	NA	Intergenic	L1PA5|LINE|L1	-96723	NM_001002026	51208	Hs.655324	NM_016369	HPRD:13066	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding
19-PTNLD28-TUMOR_peak_11239	chr1	239288422	239288546	+	6.69625	NA	Intergenic	L2a|LINE|L2	-503889	NM_000740	1131	Hs.7138	NM_000740		CHRM3	EGBRS|HM3	cholinergic receptor, muscarinic 3	protein-coding
19-PTNLD28-TUMOR_peak_102286	chr9	16154639	16154858	+	6.69625	NA	Intergenic	Intergenic	98357	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_100464	chr8	123613999	123614207	+	6.69625	NA	Intergenic	L1ME4a|LINE|L1	-179798	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_60903	chr20	36356098	36356210	+	6.69625	NA	intron (NM_001281495, intron 2 of 16)	intron (NM_001281495, intron 2 of 16)	33797	NM_030877	56259	Hs.472667	NM_030877	HPRD:10850	CTNNBL1	C20orf33|NAP|P14L|PP8304|dJ633O20.1	catenin, beta like 1	protein-coding
19-PTNLD28-TUMOR_peak_77934	chr4	166143927	166144020	+	6.69625	NA	intron (NM_001161522, intron 2 of 13)	intron (NM_001161522, intron 2 of 13)	12802	NM_001161522	11275	Hs.388668	NM_007246	HPRD:09311	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_13614	chr10	52321169	52321273	+	6.69625	NA	intron (NM_147156, intron 2 of 10)	MIR3|SINE|MIR	62516	NM_147156	259230	Hs.654698	NM_147156	HPRD:18203	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_91444	chr7	18707239	18707327	+	6.69625	NA	3' UTR (NM_001204145, exon 11 of 11)	3' UTR (NM_001204145, exon 11 of 11)	158383	NM_001204148	9734	Hs.196054	NM_014707	HPRD:05944	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
19-PTNLD28-TUMOR_peak_28038	chr13	44147274	44147362	+	6.69625	NA	intron (NM_001242863, intron 2 of 16)	intron (NM_001242863, intron 2 of 16)	56295	NM_001127615	55068	Hs.128258	NM_017993	HPRD:07644	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
19-PTNLD28-TUMOR_peak_1484	chr1	24077921	24078009	+	6.69625	NA	exon (NM_003198, exon 4 of 11)	exon (NM_003198, exon 4 of 11)	8109	NM_003198	6924	Hs.15535	NM_003198	HPRD:02873	TCEB3	EloA|SIII|SIII p110|TCEB3A	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	protein-coding
19-PTNLD28-TUMOR_peak_76720	chr4	117010062	117010155	+	6.69625	NA	Intergenic	Intergenic	-210773	NR_031737	100302290		NR_031737		MIR1973	hsa-mir-1973	microRNA 1973	ncRNA
19-PTNLD28-TUMOR_peak_29330	chr14	21025584	21025929	+	6.69625	NA	intron (NM_001001673, intron 1 of 1)	intron (NM_001001673, intron 1 of 1)	3334	NM_001110359	390443	Hs.533972	NM_001001673	HPRD:17983	RNASE9	HEL128|RAK1|h461	ribonuclease, RNase A family, 9 (non-active)	protein-coding
19-PTNLD28-TUMOR_peak_94790	chr7	107542972	107543097	+	6.69625	NA	intron (NM_001289752, intron 4 of 12)	intron (NM_001289752, intron 4 of 12)	11482	NM_000108	1738	Hs.131711	NM_000108	HPRD:02006	DLD	DLDD|DLDH|E3|GCSL|LAD|PHE3	dihydrolipoamide dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_69398	chr3	99114371	99114470	+	6.69625	NA	Intergenic	Intergenic	-243020	NM_020351	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_42605	chr17	56653004	56653092	+	6.69625	NA	intron (NM_198393, intron 22 of 32)	MLT1I|LTR|ERVL-MaLR	-31315	NM_001038704	284083	Hs.646574	NM_001038704	HPRD:08269	C17orf47	-	chromosome 17 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_36326	chr16	11961386	11961581	+	6.69625	NA	TTS (NM_001130006)	TTS (NM_001130006)	-16041	NM_015659	26156	Hs.401842	NM_015659	HPRD:10897	RSL1D1	CSIG|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69176	chr3	77717351	77717464	+	6.69625	NA	Intergenic	Intergenic	570244	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout, axon guidance receptor, homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_90347	chr6	160073957	160074140	+	6.69625	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	40305	NM_001024466	6648	Hs.487046	NM_000636	HPRD:00938	SOD2	IPOB|MNSOD|MVCD6	superoxide dismutase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_62886	chr21	19032896	19032999	+	6.69625	NA	Intergenic	Intergenic	-47679	NM_001130914	10950	Hs.473420	NM_006806	HPRD:10415	BTG3	ANA|TOB5|TOB55|TOFA	BTG family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_77480	chr4	148210401	148210574	+	6.69625	NA	Intergenic	AluSx1|SINE|Alu	-191582	NM_001256283	1909	Hs.183713	NM_001957	HPRD:00571	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR	endothelin receptor type A	protein-coding
19-PTNLD28-TUMOR_peak_58999	chr2	236180574	236180824	+	6.69625	NA	Intergenic	L1MC3|LINE|L1	-222034	NM_001037131	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_87274	chr6	38839693	38839781	+	6.69625	NA	intron (NM_001206927, intron 49 of 92)	LTR16A2|LTR|ERVL	81146	NR_038401	100131047	Hs.670957	NR_038401		LOC100131047	-	uncharacterized LOC100131047	ncRNA
19-PTNLD28-TUMOR_peak_64771	chr22	24870318	24870449	+	6.69625	NA	intron (NR_028483, intron 2 of 7)	intron (NR_028483, intron 2 of 7)	20400	NR_028484	646023	Hs.632761	NM_001039784	ENSG00000178803	ADORA2A-AS1	C22orf45	ADORA2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3878	chr1	60172985	60173112	+	6.69625	NA	intron (NM_001113411, intron 15 of 16)	intron (NM_001113411, intron 15 of 16)	25920	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_92498	chr7	49164515	49164771	+	6.69625	NA	Intergenic	Intergenic	200486	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_1310	chr1	21379710	21379798	+	6.69625	NA	intron (NM_003760, intron 1 of 31)	SVA_D|Other|Other	58122	NM_003760	8672	Hs.467084	NM_003760	HPRD:06802	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma, 3	protein-coding
19-PTNLD28-TUMOR_peak_106617	chr9	136880245	136880347	+	6.69625	NA	Intergenic	MER41C|LTR|ERV1	-10265	NR_015427	266655	Hs.654869	NR_002800		LINC00094	LP2477|NCRNA00094|bA374P20.3	long intergenic non-protein coding RNA 94	ncRNA
19-PTNLD28-TUMOR_peak_45918	chr18	55803072	55803255	+	6.69625	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-13402	NM_001144969	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_12567	chr10	27481305	27481411	+	6.69625	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	37605	NM_032844	84930	Hs.276905	NM_032844	HPRD:10499	MASTL	GREATWALL|GW|GWL|MAST-L|THC2|hGWL	microtubule associated serine/threonine kinase-like	protein-coding
19-PTNLD28-TUMOR_peak_51804	chr2	28357310	28357410	+	6.69625	NA	intron (NM_199193, intron 8 of 13)	LFSINE_Vert|SINE|SINE	72468	NR_120504	100505736	Hs.659540	NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
19-PTNLD28-TUMOR_peak_62017	chr20	51803283	51803377	+	6.69625	NA	intron (NM_001193421, intron 1 of 2)	intron (NM_001193421, intron 1 of 2)	1508	NM_001193421	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_104387	chr9	90705427	90705515	+	6.69625	NA	Intergenic	MER65C|LTR|ERV1	44429	NM_001166137	645961	Hs.632070	NM_001166137		SPATA31C2	FAM75C2	SPATA31 subfamily C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_20624	chr11	94134634	94134770	+	6.69625	NA	promoter-TSS (NM_016540)	promoter-TSS (NM_016540)	-117	NM_016540	10888	Hs.272385	NM_016540	HPRD:16125	GPR83	GIR|GPR72	G protein-coupled receptor 83	protein-coding
19-PTNLD28-TUMOR_peak_61356	chr20	44427931	44428038	+	6.69625	NA	intron (NM_052951, intron 4 of 12)	L2|LINE|L2	7408	NM_052951	116092	Hs.472852	NM_052951	HPRD:16831	DNTTIP1	C20orf167|Tdif1|dJ447F3.4	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78413	chr4	187321905	187322117	+	6.69625	NA	intron (NR_033900, intron 1 of 3)	MLT1J1|LTR|ERVL-MaLR	100201	NR_033900	285441	Hs.481369	NR_033900	ENSG00000251165	F11-AS1	-	F11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20939	chr11	105624551	105624737	+	6.69625	NA	intron (NM_001077243, intron 4 of 16)	MER21B|LTR|ERVL	143233	NR_046356	2893	Hs.503743	NM_000829	HPRD:00694	GRIA4	GLUR4|GLUR4C|GLURD|GluA4	glutamate receptor, ionotropic, AMPA 4	protein-coding
19-PTNLD28-TUMOR_peak_81121	chr5	90522059	90522147	+	6.69625	NA	Intergenic	Intergenic	88116	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_63026	chr21	29265942	29266071	+	6.69625	NA	intron (NR_049807, intron 2 of 4)	intron (NR_049807, intron 2 of 4)	17523	NR_049807	100846993		NR_049807		MIR5009	-	microRNA 5009	ncRNA
19-PTNLD28-TUMOR_peak_53038	chr2	64018192	64018280	+	6.69625	NA	Intergenic	Intergenic	-49862	NM_001001521	7360	Hs.516217	NM_006759	HPRD:08934	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
19-PTNLD28-TUMOR_peak_50060	chr19	51762725	51762861	+	6.69625	NA	intron (NM_173635, intron 1 of 5)	MER21-int|LTR|ERVL	1829	NM_173635	284369	Hs.381087	NM_173635	HPRD:08275	SIGLECL1	C19orf75|SIGLEC23P|SIGLECP7	SIGLEC family like 1	protein-coding
19-PTNLD28-TUMOR_peak_91584	chr7	22822382	22822470	+	6.69625	NA	Intergenic	Intergenic	40045	NM_019059	54543	Hs.112318	NM_019059	HPRD:16266	TOMM7	TOM7	translocase of outer mitochondrial membrane 7 homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_77919	chr4	165304934	165305309	+	6.69625	NA	promoter-TSS (NM_001166373)	promoter-TSS (NM_001166373)	-714	NM_001166373	55016	Hs.592804	NM_017923	HPRD:07940	MARCH1	MARCH-I|RNF171	membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_62955	chr21	26558678	26558808	+	6.69625	NA	Intergenic	Intergenic	245270	NR_024027	54072	Hs.234016	NM_058184	HPRD:10748	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
19-PTNLD28-TUMOR_peak_81995	chr5	127573416	127573519	+	6.69625	NA	Intergenic	Intergenic	153984	NR_046207	6558	Hs.162585	NM_001046	HPRD:06775	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_24004	chr12	47750280	47750373	+	6.69625	NA	Intergenic	HAL1|LINE|L1	-140100	NR_026544	100233209	Hs.657722	NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98316	chr8	38965004	38965316	+	6.69625	NA	5' UTR (NM_145004, exon 1 of 25)	5' UTR (NM_145004, exon 1 of 25)	110	NM_145004	203102	Hs.521545	NM_145004	HPRD:16475	ADAM32	-	ADAM metallopeptidase domain 32	protein-coding
19-PTNLD28-TUMOR_peak_88226	chr6	70720412	70720500	+	6.69625	NA	intron (NM_001858, intron 11 of 50)	L1HS|LINE|L1	144008	NM_001858	1310	Hs.444842	NM_001858		COL19A1	COL9A1L|D6S228E	collagen, type XIX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_51391	chr2	19141713	19141844	+	6.69625	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-370932	NM_001199088	93034	Hs.744358	NM_033253	HPRD:11405	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
19-PTNLD28-TUMOR_peak_105433	chr9	114568272	114568384	+	6.69625	NA	Intergenic	Intergenic	-11040	NR_109816	158401	Hs.428209	NM_173521	HPRD:12982	C9orf84	-	chromosome 9 open reading frame 84	protein-coding
19-PTNLD28-TUMOR_peak_90092	chr6	152298242	152298330	+	6.69625	NA	intron (NM_001291230, intron 5 of 8)	intron (NM_001291230, intron 5 of 8)	169472	NM_000125	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_38512	chr16	69906169	69906257	+	6.69625	NA	intron (NM_001270454, intron 7 of 23)	AluY|SINE|Alu	33573	NM_001270453	11060	Hs.408458	NM_007014	HPRD:03812	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_20916	chr11	104322696	104322824	+	6.69625	NA	Intergenic	MIRc|SINE|MIR	157270	NR_120585	102723895	Hs.48803	NR_120585		LOC102723895	-	uncharacterized LOC102723895	ncRNA
19-PTNLD28-TUMOR_peak_30536	chr14	58539421	58539548	+	6.69625	NA	intron (NM_001001872, intron 5 of 7)	intron (NM_001001872, intron 5 of 7)	79363	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
19-PTNLD28-TUMOR_peak_44984	chr18	23533794	23533945	+	6.69625	NA	Intergenic	Intergenic	136742	NM_001007559	6760	Hs.129261	NM_005637	HPRD:02559	SS18	SSXT|SYT	synovial sarcoma translocation, chromosome 18	protein-coding
19-PTNLD28-TUMOR_peak_108126	chrX	46236045	46236221	+	6.69625	NA	Intergenic	MIRb|SINE|MIR	-49024	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_53075	chr2	64691063	64691166	+	6.69625	NA	Intergenic	Intergenic	9787	NM_014181	29094	Hs.372208	NM_014181	HPRD:13708	LGALSL	GRP	lectin, galactoside-binding-like	protein-coding
19-PTNLD28-TUMOR_peak_74545	chr4	12580932	12581035	+	6.69625	NA	Intergenic	Intergenic	905006	NM_004249	9364	Hs.656060	NM_004249	HPRD:06699	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_23687	chr12	32608665	32608763	+	6.69625	NA	Intergenic	Intergenic	-46327	NM_139241	121512	Hs.117835	NM_139241	HPRD:16891	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_37968	chr16	56564905	56565061	+	6.69625	NA	Intergenic	L2a|LINE|L2	-10975	NM_031885	583	Hs.333738	NM_031885	HPRD:05855	BBS2	BBS	Bardet-Biedl syndrome 2	protein-coding
19-PTNLD28-TUMOR_peak_68442	chr3	54455732	54455832	+	6.69625	NA	intron (NM_018398, intron 4 of 37)	intron (NM_018398, intron 4 of 37)	218102	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_17864	chr11	32839220	32839321	+	6.69625	NA	Intergenic	Intergenic	-12211	NM_024081	79056	Hs.471695	NM_024081	HPRD:15187	PRRG4	PRGP4|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_99849	chr8	103343544	103343632	+	6.69625	NA	intron (NM_015902, intron 9 of 58)	intron (NM_015902, intron 9 of 58)	81329	NM_001282873	51366	Hs.492445	NM_015902	HPRD:06436	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
19-PTNLD28-TUMOR_peak_73369	chr3	194183756	194183913	+	6.69625	NA	intron (NM_024524, intron 1 of 31)	intron (NM_024524, intron 1 of 31)	5134	NM_024524	79572	Hs.529609	NM_024524	HPRD:10636	ATP13A3	AFURS1	ATPase type 13A3	protein-coding
19-PTNLD28-TUMOR_peak_5067	chr1	95635278	95635366	+	6.69625	NA	intron (NM_152487, intron 5 of 6)	AluJo|SINE|Alu	51843	NM_001199691	100527978	Hs.483512	NM_001199691	ENSG00000271092	TMEM56-RWDD3	-	TMEM56-RWDD3 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_103803	chr9	74375924	74376020	+	6.69625	NA	intron (NM_013390, intron 1 of 23)	intron (NM_013390, intron 1 of 23)	7828	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_81690	chr5	115724663	115724908	+	6.69625	NA	Intergenic	Intergenic	-14518	NR_104675	101927190	Hs.639849	NR_104675		LOC101927190	-	uncharacterized LOC101927190	ncRNA
19-PTNLD28-TUMOR_peak_78778	chr5	7755256	7755347	+	6.69625	NA	intron (NM_020546, intron 15 of 24)	intron (NM_020546, intron 15 of 24)	96302	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_92177	chr7	42730759	42730965	+	6.69625	NA	intron (NR_110833, intron 1 of 2)	intron (NR_110833, intron 1 of 2)	15184	NR_110833	101928795	Hs.566753	NR_110833	ENSG00000238284	LINC01448	-	long intergenic non-protein coding RNA 1448	ncRNA
19-PTNLD28-TUMOR_peak_89698	chr6	139977302	139977471	+	6.69625	NA	Intergenic	Intergenic	-114824	NR_038399	100132735	Hs.62646	NR_038399		LOC100132735	-	uncharacterized LOC100132735	ncRNA
19-PTNLD28-TUMOR_peak_98886	chr8	57328211	57328326	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-24999	NR_103832	442388	Hs.632065	NM_001145251	ENSG00000253542	SDR16C6P	SDR16C6	short chain dehydrogenase/reductase family 16C, member 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109813	chrX	151409934	151410022	+	6.69625	NA	intron (NM_000808, intron 5 of 9)	L1PA2|LINE|L1	-102928	NM_001204811	100533997	Hs.18048	NM_001204811		MAGEA10-MAGEA5	CT1.5	MAGEA10-MAGEA5 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_83662	chr5	161273932	161274040	+	6.69625	NA	promoter-TSS (NM_001127643)	promoter-TSS (NM_001127643)	-211	NM_000806	2554	Hs.175934	NM_000806	HPRD:00662	GABRA1	ECA4|EIEE19|EJM|EJM5	gamma-aminobutyric acid (GABA) A receptor, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_35440	chr15	99619883	99620106	+	6.69625	NA	Intergenic	Intergenic	-25292	NM_015286	23336	Hs.207106	NM_015286	HPRD:07305	SYNM	DMN|SYN	synemin, intermediate filament protein	protein-coding
19-PTNLD28-TUMOR_peak_88203	chr6	66470331	66470419	+	6.69625	NA	Intergenic	Intergenic	-27397	NR_026540	442229	Hs.390414	NR_026540		SLC25A51P1	MCART3P|bA707M13.1	solute carrier family 25, member 51 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_99362	chr8	84725522	84725610	+	6.69625	NA	Intergenic	AluY|SINE|Alu	-369887	NM_001100393	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_23671	chr12	32393856	32393973	+	6.69625	NA	intron (NM_001003398, intron 2 of 8)	intron (NM_001003398, intron 2 of 8)	133729	NM_001714	636	Hs.505202	NM_001714	HPRD:03730	BICD1	BICD	bicaudal D homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_14901	chr10	93509518	93509669	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	48360	NR_108070	100507633	Hs.291528	NR_108070		TNKS2-AS1	-	TNKS2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_75945	chr4	81991018	81991201	+	6.69625	NA	Intergenic	Intergenic	38990	NM_001201	651	Hs.387411	NM_001201	HPRD:00208	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
19-PTNLD28-TUMOR_peak_58039	chr2	207558577	207558702	+	6.69625	NA	intron (NM_001093730, intron 8 of 11)	intron (NM_001093730, intron 8 of 11)	24481	NM_001093730	391475	Hs.640667	NM_001093730	ENSG00000232125	DYTN	-	dystrotelin	protein-coding
19-PTNLD28-TUMOR_peak_5988	chr1	120351705	120351827	+	6.69625	NA	5' UTR (NM_001159352, exon 2 of 7)	5' UTR (NM_001159352, exon 2 of 7)	2437	NM_032044	83998	Hs.660883	NM_032044	HPRD:17964	REG4	GISP|REG-IV|RELP	regenerating islet-derived family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_90196	chr6	157149589	157149806	+	6.69625	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-48832	NR_039676	100616154		NR_039676	miRBase:MI0016817	MIR4466	-	microRNA 4466	ncRNA
19-PTNLD28-TUMOR_peak_69813	chr3	112383472	112383560	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-23526	NM_199511	151887	Hs.477128	NM_199511	HPRD:10508	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
19-PTNLD28-TUMOR_peak_67857	chr3	45260267	45260480	+	6.69625	NA	Intergenic	Intergenic	7441	NM_015444	25907	Hs.740403	NM_015444	HPRD:15252	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_103818	chr9	74872814	74872989	+	6.69625	NA	Intergenic	Intergenic	-47451	NR_110953	100507540	Hs.54957	NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
19-PTNLD28-TUMOR_peak_45863	chr18	54118521	54118707	+	6.69625	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	187306	NM_004786	9352	Hs.114412	NM_004786		TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_11549	chr1	248231312	248231431	+	6.69625	NA	intron (NM_175911, intron 1 of 2)	L1PA3|LINE|L1	7387	NM_001004687	391192	Hs.690412	NM_001004687	HPRD:14943	OR2L3	-	olfactory receptor, family 2, subfamily L, member 3	protein-coding
19-PTNLD28-TUMOR_peak_68287	chr3	51753330	51753432	+	6.69625	NA	TTS (NM_000839)	TTS (NM_000839)	12300	NM_000839	2912	Hs.121510	NM_000839	HPRD:04977	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate receptor, metabotropic 2	protein-coding
19-PTNLD28-TUMOR_peak_95470	chr7	133701564	133701659	+	6.69625	NA	intron (NM_021807, intron 17 of 17)	intron (NM_021807, intron 17 of 17)	-110494	NM_144648	136332	Hs.149774	NM_144648	HPRD:08734	LRGUK	-	leucine-rich repeats and guanylate kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_73230	chr3	191414448	191414586	+	6.69625	NA	Intergenic	L1ME1|LINE|L1	235565	NM_001083308	152138	Hs.690618	NM_001083308	ENSG00000253548	PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_67004	chr3	17674104	17674192	+	6.69625	NA	intron (NM_014744, intron 1 of 21)	Tigger1|DNA|TcMar-Tigger	67364	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_25250	chr12	70970923	70971039	+	6.69625	NA	intron (NM_002837, intron 8 of 31)	intron (NM_002837, intron 8 of 31)	32643	NM_002837	5787	Hs.434375	NM_002837	HPRD:01474	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type, B	protein-coding
19-PTNLD28-TUMOR_peak_107714	chrX	19104250	19104515	+	6.69625	NA	intron (NM_001079859, intron 1 of 27)	intron (NM_001079859, intron 1 of 27)	36373	NM_001184833	10149	Hs.146978	NM_005756	HPRD:04040	GPR64	EDDM6|HE6|TM7LN2	G protein-coupled receptor 64	protein-coding
19-PTNLD28-TUMOR_peak_108629	chrX	68280663	68280774	+	6.69625	NA	Intergenic	Intergenic	104647	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_75085	chr4	41602397	41602505	+	6.69625	NA	intron (NM_001289122, intron 4 of 25)	intron (NM_001289122, intron 4 of 25)	-12338	NM_001112719	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_942	chr1	14714717	14714805	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-210452	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_79612	chr5	39517984	39518208	+	6.69625	NA	Intergenic	Intergenic	-2437	NR_104632	101926940	Hs.436359	NR_104632	ENSG00000271334	LOC101926940	-	uncharacterized LOC101926940	ncRNA
19-PTNLD28-TUMOR_peak_109679	chrX	144929994	144930135	+	6.69625	NA	Intergenic	Intergenic	21136	NM_004709	9142	Hs.106688	NM_004709	HPRD:06477	TMEM257	CXorf1	transmembrane protein 257	protein-coding
19-PTNLD28-TUMOR_peak_82973	chr5	145806828	145806919	+	6.69625	NA	Intergenic	Intergenic	-20000	NM_001040006	10915	Hs.443465	NM_006706	HPRD:10393	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_102657	chr9	32783572	32783678	+	6.69625	NA	5' UTR (NM_212558, exon 1 of 2)	5' UTR (NM_212558, exon 1 of 2)	128	NM_212558	401498	Hs.522063	NM_212558		TMEM215	-	transmembrane protein 215	protein-coding
19-PTNLD28-TUMOR_peak_77886	chr4	162964120	162964208	+	6.69625	NA	intron (NM_020116, intron 2 of 15)	L1PA2|LINE|L1	121022	NM_020116	56884	Hs.32452	NM_020116	HPRD:10998	FSTL5	-	follistatin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_89782	chr6	143527239	143527403	+	6.69625	NA	intron (NM_001286587, intron 4 of 6)	intron (NM_001286587, intron 4 of 6)	145342	NM_016108	51390	Hs.567501	NM_016108	HPRD:16346	AIG1	AIG-1|dJ95L4.1	androgen-induced 1	protein-coding
19-PTNLD28-TUMOR_peak_37624	chr16	46963773	46963891	+	6.69625	NA	3' UTR (NM_133443, exon 12 of 12)	3' UTR (NM_133443, exon 12 of 12)	43793	NM_005880	10294	Hs.368078	NM_005880	HPRD:07105	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ (Hsp40) homolog, subfamily A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_80538	chr5	70869595	70869718	+	6.69625	NA	Intergenic	HERVK3-int|LTR|ERVK	-13459	NM_022132	64087	Hs.604789	NM_022132	HPRD:01952	MCCC2	MCCB	methylcrotonoyl-CoA carboxylase 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_60393	chr20	30051558	30051656	+	6.69625	NA	Intergenic	AluJr|SINE|Alu	9209	NM_001037500	245937	Hs.381373	NM_001037500	HPRD:18759	DEFB124	DEFB-24	defensin, beta 124	protein-coding
19-PTNLD28-TUMOR_peak_82671	chr5	140356594	140356810	+	6.69625	NA	intron (NM_018899, intron 1 of 3)	intron (NM_018899, intron 1 of 3)	10350	NM_031883	56134	Hs.199343	NM_018899	HPRD:07331	PCDHAC2	PCDH-ALPHA-C2	protocadherin alpha subfamily C, 2	protein-coding
19-PTNLD28-TUMOR_peak_60928	chr20	36701805	36702064	+	6.69625	NA	intron (NM_021215, intron 6 of 6)	intron (NM_021215, intron 6 of 6)	39986	NM_021215	58490	Hs.278839	NM_021215	HPRD:08513	RPRD1B	C20orf77|CREPT|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_57717	chr2	200942165	200942288	+	6.69625	NA	Intergenic	Intergenic	-121767	NR_004862	129450	Hs.204619	NM_152382	HPRD:08232	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
19-PTNLD28-TUMOR_peak_80199	chr5	61448419	61448507	+	6.69625	NA	Intergenic	Intergenic	-153526	NM_001243953	3796	Hs.558351	NM_004520		KIF2A	CDCBM3|HK2|KIF2	kinesin heavy chain member 2A	protein-coding
19-PTNLD28-TUMOR_peak_84798	chr6	2579827	2579933	+	6.69625	NA	Intergenic	Intergenic	55418	NM_152554	154386	Hs.680574	NM_152554		C6orf195	bA145H9.2	chromosome 6 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_107570	chrX	13032009	13032168	+	6.69625	NA	Intergenic	Intergenic	30829	NM_174901	171484	Hs.667546	NM_174901	HPRD:06507	FAM9C	TEX39C	family with sequence similarity 9, member C	protein-coding
19-PTNLD28-TUMOR_peak_36359	chr16	12549231	12549336	+	6.69625	NA	intron (NM_032167, intron 18 of 20)	intron (NM_032167, intron 18 of 20)	-264895	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_23496	chr12	27006899	27006992	+	6.69625	NA	Intergenic	LTR81B|LTR|Gypsy	-20814	NM_002223	3709	Hs.512235	NM_002223	HPRD:02536	ITPR2	CFAP48|IP3R2	inositol 1,4,5-trisphosphate receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_104026	chr9	80984690	80984778	+	6.69625	NA	Intergenic	Intergenic	72743	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_41281	chr17	37295600	37295693	+	6.69625	NA	intron (NM_020405, intron 2 of 13)	intron (NM_020405, intron 2 of 13)	12256	NM_020405	57125	Hs.125036	NM_020405	HPRD:08439	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_28417	chr13	67312148	67312264	+	6.69625	NA	intron (NM_020403, intron 2 of 3)	L1PA2|LINE|L1	-87095	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_40870	chr17	28068832	28069096	+	6.69625	NA	intron (NM_001282130, intron 2 of 7)	AluSc8|SINE|Alu	19486	NM_001282131	85464	Hs.654754	NM_033389	HPRD:09487	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_79747	chr5	43631592	43631685	+	6.69625	NA	intron (NM_182977, intron 7 of 21)	intron (NM_182977, intron 7 of 21)	-28306	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44665	chr18	12622046	12622134	+	6.69625	NA	intron (NM_020148, intron 2 of 15)	Tigger13a|DNA|TcMar-Tigger	34641	NM_001128627	56907	Hs.515283	NM_020148	HPRD:11600	SPIRE1	Spir-1	spire-type actin nucleation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_68800	chr3	64918457	64918596	+	6.69625	NA	intron (NR_038264, intron 4 of 5)	LTR10A|LTR|ERV1	212843	NR_030317	693126		NR_030317	miRBase:MI0003598	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
19-PTNLD28-TUMOR_peak_18144	chr11	38564994	38565119	+	6.69625	NA	Intergenic	Intergenic	102850	NR_120555	103312105	Hs.641711	NR_120554		LOC103312105	-	uncharacterized LOC103312105	ncRNA
19-PTNLD28-TUMOR_peak_63491	chr21	39400384	39400472	+	6.69625	NA	Intergenic	Intergenic	93026	NM_005867	10281	Hs.23251	NM_005867	HPRD:05318	DSCR4	DCRB|DSCRB	Down syndrome critical region gene 4	protein-coding
19-PTNLD28-TUMOR_peak_61064	chr20	39060463	39060593	+	6.69625	NA	Intergenic	Intergenic	257352	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_93720	chr7	83285399	83285512	+	6.69625	NA	Intergenic	Intergenic	-6976	NM_012431	9723	Hs.528721	NM_012431	HPRD:11545	SEMA3E	M-SEMAH|M-SemaK|SEMAH|coll-5	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
19-PTNLD28-TUMOR_peak_93582	chr7	77562751	77562960	+	6.69625	NA	intron (NM_001127358, intron 10 of 17)	L2|LINE|L2	93408	NM_001127357	57157	Hs.203965	NM_020432	HPRD:15130	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_53677	chr2	80469470	80469853	+	6.69625	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	61826	NM_178839	347730	Hs.591580	NM_178839	HPRD:14323	LRRTM1	-	leucine rich repeat transmembrane neuronal 1	protein-coding
19-PTNLD28-TUMOR_peak_58666	chr2	227050629	227050846	+	6.69625	NA	Intergenic	Intergenic	43227	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
19-PTNLD28-TUMOR_peak_92406	chr7	46921513	46921619	+	6.69625	NA	Intergenic	LTR50|LTR|ERVL	700176	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_53470	chr2	73158568	73158660	+	6.69625	NA	intron (NM_004097, intron 2 of 2)	intron (NM_004097, intron 2 of 2)	14010	NM_004097	2016	Hs.516090	NM_004097	HPRD:08963	EMX1	-	empty spiracles homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_83042	chr5	147340890	147341012	+	6.69625	NA	Intergenic	L2a|LINE|L2	-54850	NM_206966	389336	Hs.660038	NM_206966	HPRD:14491	C5orf46	SSSP1	chromosome 5 open reading frame 46	protein-coding
19-PTNLD28-TUMOR_peak_108797	chrX	75648087	75648386	+	6.69625	NA	5' UTR (NM_020932, exon 1 of 1)	5' UTR (NM_020932, exon 1 of 1)	190	NM_020932	57692	Hs.8453	NM_020932	HPRD:06583	MAGEE1	DAMAGE|HCA1	melanoma antigen family E, 1	protein-coding
19-PTNLD28-TUMOR_peak_83796	chr5	168877598	168877686	+	6.69625	NA	Intergenic	L2a|LINE|L2	-132996	NM_017785	54908	Hs.368710	NM_017785	HPRD:08623	SPDL1	CCDC99	spindle apparatus coiled-coil protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79548	chr5	37723023	37723192	+	6.69625	NA	intron (NM_018034, intron 15 of 17)	intron (NM_018034, intron 15 of 17)	111817	NM_001278098	2668	Hs.248114	NM_000514	HPRD:02906	GDNF	ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_34692	chr15	78405675	78405763	+	6.69625	NA	intron (NM_001271888, intron 1 of 4)	intron (NM_001271888, intron 1 of 4)	18158	NM_001271889	10518	Hs.129867	NM_006383	HPRD:05713	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
19-PTNLD28-TUMOR_peak_32791	chr15	30231799	30231905	+	6.69625	NA	intron (NM_001301025, intron 2 of 28)	MLT1A0|LTR|ERVL-MaLR	29150	NM_001301025	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_74736	chr4	22031588	22031698	+	6.69625	NA	Intergenic	Intergenic	-81269	NM_147182	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_65239	chr22	34070563	34070651	+	6.69625	NA	intron (NM_004737, intron 3 of 15)	L2c|LINE|L2	-50365	NR_038949	100506195	Hs.658872	NR_038949	ENSG00000224973	LARGE-AS1	-	LARGE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82038	chr5	130311695	130311783	+	6.69625	NA	Intergenic	Intergenic	189302	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_92873	chr7	64772819	64772937	+	6.69625	NA	intron (NR_038378, intron 9 of 9)	PABL_B-int|LTR|ERV1	-65834	NM_152626	168374	Hs.9521	NM_007139	HPRD:04919	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
19-PTNLD28-TUMOR_peak_74846	chr4	26122231	26122509	+	6.69625	NA	Intergenic	Intergenic	-198962	NM_203283	3516	Hs.479396	NM_005349	HPRD:00920	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
19-PTNLD28-TUMOR_peak_18219	chr11	43977365	43977572	+	6.69625	NA	Intergenic	LTR8A|LTR|ERV1	13362	NM_001145033	387763	Hs.530443	NM_001145033		C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_87579	chr6	43370687	43370788	+	6.69625	NA	Intergenic	Intergenic	-24555	NM_001198934	89845	Hs.55879	NM_033450	HPRD:07623	ABCC10	EST182763|MRP7|SIMRP7	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding
19-PTNLD28-TUMOR_peak_11956	chr10	8800175	8800268	+	6.69625	NA	Intergenic	Intergenic	-489953	NR_108058	100507143	Hs.258979	NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
19-PTNLD28-TUMOR_peak_34764	chr15	80386207	80386331	+	6.69625	NA	intron (NM_001242912, intron 2 of 6)	intron (NM_001242912, intron 2 of 6)	-4489	NM_001242919	54469	Hs.596679	NM_019006	HPRD:18314	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger, AN1-type domain 6	protein-coding
19-PTNLD28-TUMOR_peak_37661	chr16	48284963	48285070	+	6.69625	NA	intron (NM_001300948, intron 1 of 13)	intron (NM_001300948, intron 1 of 13)	6938	NM_001300948	83752	Hs.295923	NM_031490		LONP2	LONP|LONPL	lon peptidase 2, peroxisomal	protein-coding
19-PTNLD28-TUMOR_peak_110318	chrY	26922607	26922752	+	6.69625	NA	intron (NM_020420, intron 13 of 16)	L1PA2|LINE|L1	36960	NM_020364	57054	Hs.70936	NM_020364	HPRD:15959	DAZ3	pDP1679	deleted in azoospermia 3	protein-coding
19-PTNLD28-TUMOR_peak_109179	chrX	110158484	110158572	+	6.69625	NA	Intergenic	Intergenic	-28985	NM_001128166	5063	Hs.593599	NM_002578	HPRD:02142	PAK3	CDKN1A|MRX30|MRX47|OPHN3|PAK3beta|bPAK|hPAK3	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_15633	chr10	112562566	112562715	+	6.69625	NA	intron (NM_001134363, intron 7 of 13)	MIRc|SINE|MIR	68022	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_76674	chr4	114068328	114068500	+	6.69625	NA	intron (NM_020977, intron 1 of 44)	intron (NM_020977, intron 1 of 44)	-5024	NR_107049	102465878		NR_107049		MIR8082	hsa-mir-8082	microRNA 8082	ncRNA
19-PTNLD28-TUMOR_peak_88753	chr6	90778160	90778279	+	6.69625	NA	intron (NM_021813, intron 5 of 8)	MIRc|SINE|MIR	174031	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_26488	chr12	117037264	117037377	+	6.69625	NA	Intergenic	Intergenic	40134	NM_001085481	643246	Hs.506947	NM_001085481	ENSG00000171471	MAP1LC3B2	ATG8G	microtubule-associated protein 1 light chain 3 beta 2	protein-coding
19-PTNLD28-TUMOR_peak_22614	chr12	4867392	4867576	+	6.69625	NA	intron (NM_017417, intron 6 of 10)	intron (NM_017417, intron 6 of 10)	37732	NM_017417	26290	Hs.511985	NM_017417	HPRD:09374	GALNT8	GALNAC-T8	polypeptide N-acetylgalactosaminyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_100898	chr8	129789445	129789578	+	6.69625	NA	Intergenic	Intergenic	-212586	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_89722	chr6	140875656	140875805	+	6.69625	NA	Intergenic	L1MA3|LINE|L1	-129221	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_50784	chr2	1522817	1522921	+	6.69625	NA	intron (NM_175722, intron 13 of 14)	MLT1C|LTR|ERVL-MaLR	104689	NM_175721	7173	Hs.467554	NM_000547	HPRD:06000	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_5927	chr1	119260580	119260763	+	6.69625	NA	Intergenic	Intergenic	271508	NM_152380	6913	Hs.146196	NM_152380	HPRD:16035	TBX15	TBX14	T-box 15	protein-coding
19-PTNLD28-TUMOR_peak_21057	chr11	109736674	109736766	+	6.69625	NA	Intergenic	Intergenic	-227367	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
19-PTNLD28-TUMOR_peak_80649	chr5	73097178	73097266	+	6.69625	NA	intron (NM_001080479, intron 9 of 36)	AluY|SINE|Alu	-12121	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_12388	chr10	23428754	23428857	+	6.69625	NA	Intergenic	MSTB|LTR|ERVL-MaLR	44378	NM_012228	22921	Hs.461420	NM_012228	HPRD:17606	MSRB2	CBS-1|CBS1|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
19-PTNLD28-TUMOR_peak_109616	chrX	138027451	138027639	+	6.69625	NA	intron (NM_001139500, intron 2 of 6)	intron (NM_001139500, intron 2 of 6)	-77828	NM_001139502	2258	Hs.6540	NM_004114	HPRD:02090	FGF13	FGF-13|FGF2|FHF-2|FHF2	fibroblast growth factor 13	protein-coding
19-PTNLD28-TUMOR_peak_103063	chr9	38443331	38443419	+	6.69625	NA	Intergenic	Intergenic	-18931	NM_001007563	347252	Hs.349705	NM_001007563		IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin-like growth factor binding protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88394	chr6	76135101	76135270	+	6.69625	NA	intron (NM_001300866, intron 1 of 6)	intron (NM_001300866, intron 1 of 6)	68360	NR_110608	27145	Hs.696158	NM_015687	HPRD:09533	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_90566	chr6	168294240	168294328	+	6.69625	NA	intron (NM_001207008, intron 8 of 31)	intron (NM_001207008, intron 8 of 31)	65969	NM_001291964	4301	Hs.614974	NM_005936	HPRD:01164	MLLT4	AF6	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	protein-coding
19-PTNLD28-TUMOR_peak_69690	chr3	110607683	110607810	+	6.69625	NA	Intergenic	L1HS|LINE|L1	181060	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70935	chr3	133448133	133448221	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-16800	NM_001063	7018	Hs.518267	NM_001063	HPRD:01811	TF	PRO1557|PRO2086|TFQTL1	transferrin	protein-coding
19-PTNLD28-TUMOR_peak_72169	chr3	165879640	165879758	+	6.69625	NA	Intergenic	Intergenic	-324446	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_67373	chr3	31118661	31118779	+	6.69625	NA	Intergenic	L2|LINE|L2	-182567	NM_207359	339896	Hs.657052	NM_207359	HPRD:13557	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_81147	chr5	91494683	91494844	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-815614	NM_020801	57561	Hs.24684	NM_020801	HPRD:09810	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_100433	chr8	122261170	122261262	+	6.69625	NA	Intergenic	Intergenic	-390370	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_106496	chr9	134533843	134533942	+	6.69625	NA	intron (NM_005312, intron 1 of 23)	intron (NM_005312, intron 1 of 23)	51337	NM_198679	2889	Hs.127897	NM_005312	HPRD:02627	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_107476	chrX	8342581	8342901	+	6.69625	NA	Intergenic	Intergenic	-90130	NM_001001888	425054	Hs.279737	NM_001001888	HPRD:15646	VCX3B	VCX-C|VCXC	variable charge, X-linked 3B	protein-coding
19-PTNLD28-TUMOR_peak_88826	chr6	95494894	95494994	+	6.69625	NA	Intergenic	L1PA7|LINE|L1	530383	NR_104136	101927288	Hs.616643	NR_047502		MANEA-AS1	-	MANEA antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_42797	chr17	61008560	61008648	+	6.69625	NA	intron (NR_036146, intron 3 of 3)	L2a|LINE|L2	-78294	NM_025185	26115	Hs.410889	NM_015623	ENSG00000170921	TANC2	ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
19-PTNLD28-TUMOR_peak_53710	chr2	83995536	83995624	+	6.69625	NA	Intergenic	L1HS|LINE|L1	-522226	NR_003663	388965	Hs.664098	NM_001013648	HPRD:18390	FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_22414	chr12	1276558	1276646	+	6.69625	NA	intron (NM_001301248, intron 7 of 18)	intron (NM_001301248, intron 7 of 18)	139688	NM_001301248	23085	Hs.601216	NM_178039	HPRD:06181	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
19-PTNLD28-TUMOR_peak_50119	chr19	52751739	52751827	+	6.69625	NA	Intergenic	Intergenic	-21041	NM_001010851	90321	Hs.439662	NM_001010851	HPRD:14268	ZNF766	-	zinc finger protein 766	protein-coding
19-PTNLD28-TUMOR_peak_80036	chr5	56980320	56980408	+	6.69625	NA	Intergenic	THE1D|LTR|ERVL-MaLR	33877	NR_104668	101928505	Hs.119998	NR_104668		LOC101928505	-	uncharacterized LOC101928505	ncRNA
19-PTNLD28-TUMOR_peak_108020	chrX	40886774	40886951	+	6.69625	NA	Intergenic	Intergenic	-58026	NM_001039590	8239	Hs.77578	NM_004652	HPRD:02091	USP9X	DFFRX|FAF|FAM|MRX99	ubiquitin specific peptidase 9, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_109023	chrX	102971987	102972101	+	6.69625	NA	intron (NM_001024452, intron 7 of 8)	intron (NM_001024452, intron 7 of 8)	6207	NM_182541	203562	Hs.98843	NM_182541	HPRD:06652	TMEM31	-	transmembrane protein 31	protein-coding
19-PTNLD28-TUMOR_peak_4297	chr1	69421241	69421351	+	6.69625	NA	Intergenic	Intergenic	-458392	NM_001114120	55635	Hs.445098	NM_017779	HPRD:10879	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52040	chr2	33058021	33058225	+	6.69625	NA	intron (NR_027098, intron 1 of 5)	intron (NR_027098, intron 1 of 5)	7613	NR_027098	285045	Hs.434660	NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
19-PTNLD28-TUMOR_peak_68392	chr3	53238289	53238380	+	6.69625	NA	Intergenic	AluSg4|SINE|Alu	43111	NM_006254	5580	Hs.155342	NM_006254	HPRD:01501	PRKCD	CVID9|MAY1|PKCD|nPKC-delta	protein kinase C, delta	protein-coding
19-PTNLD28-TUMOR_peak_31993	chr14	99845406	99845494	+	6.69625	NA	Intergenic	Intergenic	101776	NM_032233	84193	Hs.510407	NM_032233	HPRD:08664	SETD3	C14orf154	SET domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_89851	chr6	147354556	147354679	+	6.69625	NA	intron (NR_034115, intron 5 of 10)	intron (NR_034115, intron 5 of 10)	-170877	NM_001127715	134957	Hs.86320	NM_139244		STXBP5	LGL3|LLGL3|Nbla04300	syntaxin binding protein 5 (tomosyn)	protein-coding
19-PTNLD28-TUMOR_peak_62990	chr21	28088352	28088440	+	6.69625	NA	Intergenic	Intergenic	129332	NM_006988	9510	Hs.643357	NM_006988	HPRD:05530	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif, 1	protein-coding
19-PTNLD28-TUMOR_peak_23434	chr12	25690116	25690204	+	6.69625	NA	intron (NM_001145728, intron 4 of 9)	L1PA3|LINE|L1	16057	NM_001145728	160492	Hs.44647	NM_152590	HPRD:08768	LMNTD1	IFLTD1|PAS1C1	lamin tail domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_13689	chr10	55514726	55514814	+	6.69625	NA	Intergenic	AluYc|SINE|Alu	-983310	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_40427	chr17	17794459	17794557	+	6.69625	NA	intron (NM_001033551, intron 3 of 13)	intron (NM_001033551, intron 3 of 13)	-54183	NM_004176	6720	Hs.592123	NM_004176	HPRD:01701	SREBF1	SREBP-1c|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_15648	chr10	113139407	113139764	+	6.69625	NA	Intergenic	Intergenic	302795	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_27838	chr13	36728925	36729033	+	6.69625	NA	Intergenic	CpG	-23465	NM_004734	9201	Hs.507755	NM_004734		DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_102244	chr9	14876232	14876360	+	6.69625	NA	intron (NM_144966, intron 2 of 37)	L1PA3|LINE|L1	34697	NM_144966	158326	Hs.50850	NM_144966	HPRD:09865	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
19-PTNLD28-TUMOR_peak_34754	chr15	80145953	80146070	+	6.69625	NA	intron (NR_037654, intron 2 of 2)	intron (NR_037654, intron 2 of 2)	43328	NR_037654	10588	Hs.194294	NM_006441		MTHFS	HsT19268	5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)	protein-coding
19-PTNLD28-TUMOR_peak_103883	chr9	76299642	76299849	+	6.69625	NA	Intergenic	L1M1|LINE|L1	532964	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_51317	chr2	16678050	16678304	+	6.69625	NA	Intergenic	Intergenic	168957	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_45445	chr18	42982787	42982875	+	6.69625	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	104170	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_18357	chr11	45848209	45848297	+	6.69625	NA	Intergenic	AluSz|SINE|Alu	-20416	NM_001127457	1408	Hs.532491	NM_021117	HPRD:07226	CRY2	HCRY2|PHLL2	cryptochrome circadian clock 2	protein-coding
19-PTNLD28-TUMOR_peak_75715	chr4	76473335	76473453	+	6.69625	NA	Intergenic	Intergenic	-7864	NM_178497	152816	Hs.24510	NM_178497	HPRD:08040	C4orf26	AI2A4	chromosome 4 open reading frame 26	protein-coding
19-PTNLD28-TUMOR_peak_82931	chr5	144863925	144864026	+	6.69625	NA	Intergenic	Intergenic	350957	NM_138492	153768	Hs.314261	NM_138492	HPRD:14479	PRELID2	-	PRELI domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25830	chr12	102065281	102065369	+	6.69625	NA	intron (NM_001254721, intron 21 of 28)	intron (NM_001254721, intron 21 of 28)	-26092	NM_020244	56994	Hs.293077	NM_020244	HPRD:13052	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_90476	chr6	166689301	166689394	+	6.69625	NA	Intergenic	Intergenic	32524	NM_175922	285800	Hs.731862	NM_175922	HPRD:17533	PRR18	-	proline rich 18	protein-coding
19-PTNLD28-TUMOR_peak_109890	chrX	152927747	152928089	+	6.69625	NA	Intergenic	CpG	10825	NM_001135740	139728	Hs.436667	NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
19-PTNLD28-TUMOR_peak_81057	chr5	87609400	87609491	+	6.69625	NA	intron (NR_105019, intron 6 of 7)	L1P1|LINE|L1	44612	NR_039994	100505894	Hs.559426	NR_039993	ENSG00000247828	TMEM161B-AS1	linc-POLR3G-8	TMEM161B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_17524	chr11	18797363	18797455	+	6.69625	NA	intron (NM_001039970, intron 1 of 14)	intron (NM_001039970, intron 1 of 14)	15980	NM_001278238	84867	Hs.79092	NM_006906	HPRD:01472	PTPN5	PTPSTEP|STEP	protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)	protein-coding
19-PTNLD28-TUMOR_peak_89429	chr6	129508314	129508416	+	6.69625	NA	intron (NM_001079823, intron 10 of 63)	intron (NM_001079823, intron 10 of 63)	304079	NM_000426	3908	Hs.200841	NM_000426	HPRD:01125	LAMA2	LAMM	laminin, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_92183	chr7	42916199	42916290	+	6.69625	NA	Intergenic	MIRb|SINE|MIR	35445	NM_001099858	79020	Hs.698120	NM_024054	HPRD:09861	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_23481	chr12	26587388	26587476	+	6.69625	NA	intron (NM_002223, intron 48 of 56)	intron (NM_002223, intron 48 of 56)	238926	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_42405	chr17	53719283	53719385	+	6.69625	NA	Intergenic	Intergenic	80891	NM_018286	55273	Hs.173233	NM_018286	HPRD:07719	TMEM100	-	transmembrane protein 100	protein-coding
19-PTNLD28-TUMOR_peak_28040	chr13	44238849	44239172	+	6.69625	NA	intron (NM_001242863, intron 2 of 16)	intron (NM_001242863, intron 2 of 16)	-35397	NM_001127615	55068	Hs.128258	NM_017993	HPRD:07644	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
19-PTNLD28-TUMOR_peak_53185	chr2	66591913	66592111	+	6.69625	NA	Intergenic	Intergenic	-6552	NR_039938	100616464		NR_039938	miRBase:MI0017422	MIR4778	-	microRNA 4778	ncRNA
19-PTNLD28-TUMOR_peak_108075	chrX	43885954	43886044	+	6.69625	NA	Intergenic	AluY|SINE|Alu	-53078	NM_000266	4693	Hs.522615	NM_000266	HPRD:02404	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
19-PTNLD28-TUMOR_peak_88862	chr6	99395332	99395441	+	6.69625	NA	intron (NM_001278716, intron 1 of 9)	CpG	496	NM_012160	26235	Hs.536850	NM_012160	HPRD:05738	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine-rich repeat protein 4	protein-coding
19-PTNLD28-TUMOR_peak_37549	chr16	34309773	34309868	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	94942	NR_002837	606551	Hs.646441	NR_002837		UBE2MP1	-	ubiquitin-conjugating enzyme E2M pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_40591	chr17	19861476	19861564	+	6.69625	NA	exon (NM_007202, exon 4 of 15)	exon (NM_007202, exon 4 of 15)	19649	NM_007202	11216	Hs.642676	NM_007202	HPRD:05259	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
19-PTNLD28-TUMOR_peak_11758	chr10	4541023	4541118	+	6.69625	NA	Intergenic	Intergenic	92409	NR_108056	100507059	Hs.158438	NR_108054		LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA
19-PTNLD28-TUMOR_peak_56269	chr2	150655957	150656057	+	6.69625	NA	intron (NR_110240, intron 2 of 2)	intron (NR_110240, intron 2 of 2)	-211677	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_66152	chr3	116555	116643	+	6.69625	NA	Intergenic	MER41B|LTR|ERV1	51168	NR_110824	102723448	Hs.543290	NR_110824		LOC102723448	-	uncharacterized LOC102723448	ncRNA
19-PTNLD28-TUMOR_peak_21350	chr11	115795997	115796104	+	6.69625	NA	Intergenic	Intergenic	-165132	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_20958	chr11	106657072	106657194	+	6.69625	NA	intron (NM_001256424, intron 5 of 8)	intron (NM_001256424, intron 5 of 8)	232038	NM_000855	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_91944	chr7	33525868	33525968	+	6.69625	NA	intron (NM_198428, intron 19 of 22)	intron (NM_198428, intron 19 of 22)	356766	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_93330	chr7	74106730	74106890	+	6.69625	NA	intron (NM_001280800, intron 3 of 9)	intron (NM_001280800, intron 3 of 9)	34819	NM_001163636	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_81801	chr5	122218644	122218757	+	6.69625	NA	intron (NM_014035, intron 1 of 6)	intron (NM_014035, intron 1 of 6)	37540	NM_014035	28966	Hs.483200	NM_014035	HPRD:15413	SNX24	PRO1284	sorting nexin 24	protein-coding
19-PTNLD28-TUMOR_peak_99176	chr8	72318651	72318863	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-44290	NM_001288574	2138	Hs.491997	NM_000503	HPRD:03388	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_65320	chr22	36591138	36591247	+	6.69625	NA	intron (NM_145660, intron 4 of 4)	intron (NM_145660, intron 4 of 4)	9687	NM_145660	80832	Hs.115099	NM_030643		APOL4	APOL-IV|APOLIV	apolipoprotein L, 4	protein-coding
19-PTNLD28-TUMOR_peak_31390	chr14	77228008	77228266	+	6.69625	NA	promoter-TSS (NM_014909)	promoter-TSS (NM_014909)	-98	NM_014909	22846	Hs.525479	NM_014909	HPRD:12353	VASH1	KIAA1036	vasohibin 1	protein-coding
19-PTNLD28-TUMOR_peak_106094	chr9	128311953	128312049	+	6.69625	NA	intron (NM_001006618, intron 6 of 7)	intron (NM_001006618, intron 6 of 7)	157512	NM_001006619	79109	Hs.495138	NM_024117	HPRD:17464	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54738	chr2	108045381	108045533	+	6.69625	NA	Intergenic	HAL1|LINE|L1	397126	NR_024439	729121	Hs.386155	NR_024439	ENSG00000230651	RGPD4-AS1	-	RGPD4 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_109260	chrX	117359469	117359586	+	6.69625	NA	Intergenic	Intergenic	-108224	NM_001168301	90293	Hs.348262	NM_033495	HPRD:06461	KLHL13	BKLHD2	kelch-like family member 13	protein-coding
19-PTNLD28-TUMOR_peak_33984	chr15	64927756	64927844	+	6.69625	NA	intron (NM_015042, intron 2 of 8)	intron (NM_015042, intron 2 of 8)	67680	NM_001301302	4947	Hs.744924	NM_002537	HPRD:11966	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
19-PTNLD28-TUMOR_peak_44290	chr18	2857643	2857759	+	6.69625	NA	intron (NM_032048, intron 2 of 7)	intron (NM_032048, intron 2 of 7)	10673	NM_032048	84034	Hs.532815	NM_032048		EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
19-PTNLD28-TUMOR_peak_103550	chr9	69127426	69127527	+	6.69625	NA	intron (NR_002836, intron 1 of 8)	intron (NR_002836, intron 1 of 8)	20378	NR_002836	595135	Hs.571593	NR_002836	ENSG00000227558	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_66678	chr3	12735858	12735956	+	6.69625	NA	Intergenic	Intergenic	-30207	NM_002880	5894	Hs.159130	NM_002880	HPRD:01265	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_93635	chr7	80057913	80058001	+	6.69625	NA	Intergenic	Intergenic	-54202	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
19-PTNLD28-TUMOR_peak_15545	chr10	109561007	109561095	+	6.69625	NA	Intergenic	SVA_D|Other|Other	268000	NR_125760	103695365	Hs.648991	NR_125760		LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
19-PTNLD28-TUMOR_peak_56133	chr2	144618619	144618757	+	6.69625	NA	Intergenic	L1HS|LINE|L1	-75946	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
19-PTNLD28-TUMOR_peak_92592	chr7	53099763	53099909	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-3513	NM_182595	285877	Hs.381970	NM_182595	HPRD:13212	POM121L12	-	POM121 transmembrane nucleoporin-like 12	protein-coding
19-PTNLD28-TUMOR_peak_99768	chr8	102049343	102049473	+	6.69625	NA	Intergenic	Intergenic	-14874	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
19-PTNLD28-TUMOR_peak_16302	chr10	133811318	133811553	+	6.69625	NA	Intergenic	Intergenic	-16000	NM_004052	664	Hs.144873	NM_004052		BNIP3	NIP3	BCL2/adenovirus E1B 19kDa interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_52907	chr2	58335147	58335237	+	6.69625	NA	intron (NM_001288838, intron 9 of 15)	intron (NM_001288838, intron 9 of 15)	61345	NM_001130481	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_67334	chr3	30230385	30230473	+	6.69625	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-254782	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_102516	chr9	24436878	24436999	+	6.69625	NA	Intergenic	LTR16E1|LTR|ERVL	108736	NM_001271706	100129669	Hs.573530	NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
19-PTNLD28-TUMOR_peak_102423	chr9	20921513	20921633	+	6.69625	NA	intron (NM_017794, intron 26 of 45)	intron (NM_017794, intron 26 of 45)	110062	NM_001010915	401494	Hs.716678	NM_001010915		PTPLAD2	HACD4	protein tyrosine phosphatase-like A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_76785	chr4	119954567	119954695	+	6.69625	NA	3' UTR (NM_001128933, exon 4 of 4)	3' UTR (NM_001128933, exon 4 of 4)	-102308	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_52499	chr2	45208901	45209035	+	6.69625	NA	Intergenic	Intergenic	27574	NM_016932	10736	Hs.101937	NM_016932	HPRD:05408	SIX2	-	SIX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_97269	chr8	13451045	13451133	+	6.69625	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	26737	NM_001007090	157773	Hs.104941	NM_001007090	HPRD:16922	C8orf48	-	chromosome 8 open reading frame 48	protein-coding
19-PTNLD28-TUMOR_peak_85753	chr6	18324547	18324669	+	6.69625	NA	Intergenic	Intergenic	-59809	NM_001134709	7913	Hs.484813	NM_003472	HPRD:00503	DEK	D6S231E	DEK proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_86215	chr6	27162855	27162943	+	6.69625	NA	Intergenic	LTR13A|LTR|ERVK	47494	NR_036096	100422934		NR_036096	miRBase:MI0014167	MIR3143	-	microRNA 3143	ncRNA
19-PTNLD28-TUMOR_peak_15246	chr10	102728841	102729077	+	6.69625	NA	Intergenic	Intergenic	-3327	NM_017893	57715	Hs.591923	NM_017893	HPRD:10218	SEMA4G	-	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding
19-PTNLD28-TUMOR_peak_17776	chr11	29355916	29356037	+	6.69625	NA	Intergenic	Intergenic	682601	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_33159	chr15	40509537	40509648	+	6.69625	NA	promoter-TSS (NM_001128629)	promoter-TSS (NM_001128629)	-37	NM_001128629	56924	Hs.513645	NM_020168	HPRD:06426	PAK6	PAK5	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_45976	chr18	56724572	56724660	+	6.69625	NA	Intergenic	Intergenic	21645	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_100728	chr8	126970132	126970222	+	6.69625	NA	Intergenic	L2|LINE|L2	-6736	NR_038446	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_34554	chr15	75487910	75488015	+	6.69625	NA	Intergenic	Intergenic	-6259	NM_015492	56905	Hs.17936	NM_015492	HPRD:13154	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
19-PTNLD28-TUMOR_peak_28036	chr13	43904105	43904226	+	6.69625	NA	intron (NM_001127615, intron 9 of 16)	intron (NM_001127615, intron 9 of 16)	-118823	NR_120399	100874130	Hs.738887	NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_76402	chr4	102090528	102090616	+	6.69625	NA	intron (NM_001130691, intron 2 of 12)	intron (NM_001130691, intron 2 of 12)	71457	NR_107033	102465868		NR_107033		MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
19-PTNLD28-TUMOR_peak_57157	chr2	177796689	177796853	+	6.69625	NA	Intergenic	Intergenic	-280651	NM_194247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
19-PTNLD28-TUMOR_peak_68553	chr3	57692337	57692497	+	6.69625	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-13601	NM_152678	201627	Hs.91085	NM_152678	HPRD:08756	DENND6A	AFI1A|FAM116A	DENN/MADD domain containing 6A	protein-coding
19-PTNLD28-TUMOR_peak_69673	chr3	109857981	109858082	+	6.69625	NA	Intergenic	Intergenic	729194	NR_109841	401082	Hs.477089	NM_001145553		LINC01205	-	long intergenic non-protein coding RNA 1205	ncRNA
19-PTNLD28-TUMOR_peak_99954	chr8	105471274	105471454	+	6.69625	NA	intron (NM_001385, intron 1 of 9)	Tigger12A|DNA|TcMar-Tigger	7913	NM_001385	1807	Hs.443161	NM_001385	HPRD:01960	DPYS	DHP|DHPase	dihydropyrimidinase	protein-coding
19-PTNLD28-TUMOR_peak_33188	chr15	40845891	40846089	+	6.69625	NA	3' UTR (NM_052849, exon 4 of 4)	3' UTR (NM_052849, exon 4 of 4)	11266	NM_001289132	90416	Hs.654661	NM_052849	HPRD:14473	C15orf57	CCDC32	chromosome 15 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_92837	chr7	63781431	63781535	+	6.69625	NA	intron (NM_001170905, intron 1 of 3)	intron (NM_001170905, intron 1 of 3)	7232	NM_001170905	728927	Hs.386162	NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
19-PTNLD28-TUMOR_peak_89486	chr6	132722649	132722783	+	6.69625	NA	promoter-TSS (NM_015529)	promoter-TSS (NM_015529)	-43	NM_015529	26002	Hs.6909	NM_015529	HPRD:10093	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase, DBH-like 1	protein-coding
19-PTNLD28-TUMOR_peak_57706	chr2	200581633	200581756	+	6.69625	NA	Intergenic	Intergenic	108903	NR_110270	101927641	Hs.549598	NR_110270	ENSG00000238217	LOC101927641	-	uncharacterized LOC101927641	ncRNA
19-PTNLD28-TUMOR_peak_87963	chr6	52606769	52606905	+	6.69625	NA	non-coding (NR_033760, exon 1 of 1)	non-coding (NR_033760, exon 1 of 1)	3120	NR_033760	730152	Hs.739662	NR_033760		GSTA7P	GSTAP2|GSTAP6	glutathione S-transferase alpha 7, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_58040	chr2	207564981	207565069	+	6.69625	NA	intron (NM_001093730, intron 5 of 11)	intron (NM_001093730, intron 5 of 11)	18095	NM_001093730	391475	Hs.640667	NM_001093730	ENSG00000232125	DYTN	-	dystrotelin	protein-coding
19-PTNLD28-TUMOR_peak_76804	chr4	120273463	120273620	+	6.69625	NA	Intergenic	Intergenic	-30225	NM_000134	2169	Hs.282265	NM_000134	HPRD:00611	FABP2	FABPI|I-FABP	fatty acid binding protein 2, intestinal	protein-coding
19-PTNLD28-TUMOR_peak_75553	chr4	67237707	67237859	+	6.69625	NA	Intergenic	AluYf4|SINE|Alu	-701570	NM_001281767	2044	Hs.654492	NM_004439	HPRD:02474	EPHA5	CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4	EPH receptor A5	protein-coding
19-PTNLD28-TUMOR_peak_80209	chr5	61639367	61639468	+	6.69625	NA	intron (NM_001243952, intron 2 of 20)	L2|LINE|L2	37428	NM_004520	3796	Hs.558351	NM_004520		KIF2A	CDCBM3|HK2|KIF2	kinesin heavy chain member 2A	protein-coding
19-PTNLD28-TUMOR_peak_92977	chr7	67090382	67090479	+	6.69625	NA	Intergenic	MamGypLTR3|LTR|Gypsy	289467	NR_108104	101929736	Hs.634050	NR_108104		LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
19-PTNLD28-TUMOR_peak_1434	chr1	23340370	23340537	+	6.69625	NA	exon (NM_001242521, exon 2 of 3)	exon (NM_001242521, exon 2 of 3)	1890	NM_001242521	729059	Hs.236896	NM_001242521	ENSG00000227868	C1orf234	-	chromosome 1 open reading frame 234	protein-coding
19-PTNLD28-TUMOR_peak_89461	chr6	131456987	131457224	+	6.69625	NA	intron (NM_016377, intron 1 of 7)	CpG	279	NM_016377	9465	Hs.486483	NM_004842	HPRD:16065	AKAP7	AKAP15|AKAP18	A kinase (PRKA) anchor protein 7	protein-coding
19-PTNLD28-TUMOR_peak_91741	chr7	27462967	27463174	+	6.69625	NA	Intergenic	Intergenic	-176222	NR_120507	101410536	Hs.687800	NR_120507		EVX1-AS	EVX1-AS1	EVX1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_9862	chr1	208965024	208965137	+	6.69625	NA	Intergenic	Intergenic	-547415	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_20374	chr11	83278173	83278261	+	6.69625	NA	intron (NM_001364, intron 14 of 22)	intron (NM_001364, intron 14 of 22)	115251	NM_001142702	1740	Hs.367656	NM_001364	HPRD:04663	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_27430	chr13	22635553	22635670	+	6.69625	NA	Intergenic	Intergenic	-148813	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_48479	chr19	31755362	31755524	+	6.69625	NA	Intergenic	MER102b|DNA|hAT-Charlie	84747	NM_020856	57616	Hs.278436	NM_020856	HPRD:18351	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_98719	chr8	52438725	52438816	+	6.69625	NA	intron (NM_144651, intron 4 of 22)	intron (NM_144651, intron 4 of 22)	283235	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_85437	chr6	12636258	12636347	+	6.69625	NA	Intergenic	Intergenic	-80735	NM_001242648	221692	Hs.436996	NM_030948		PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_40590	chr17	19853660	19853817	+	6.69625	NA	intron (NM_007202, intron 4 of 14)	SVA_B|Other|Other	27431	NM_007202	11216	Hs.642676	NM_007202	HPRD:05259	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding
19-PTNLD28-TUMOR_peak_35617	chr16	508427	508553	+	6.69625	NA	intron (NM_014700, intron 1 of 13)	intron (NM_014700, intron 1 of 13)	-16360	NM_001142272	9727	Hs.531642	NM_014700	HPRD:18521	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3 (class II)	protein-coding
19-PTNLD28-TUMOR_peak_30030	chr14	41532174	41532264	+	6.69625	NA	intron (NR_109758, intron 3 of 3)	L2|LINE|L2	108303	NR_109757	644919	Hs.434414	NR_109757		LOC644919	-	uncharacterized LOC644919	ncRNA
19-PTNLD28-TUMOR_peak_51092	chr2	10716195	10716313	+	6.69625	NA	intron (NR_048552, intron 19 of 19)	L1MB7|LINE|L1	113859	NM_024894	79954	Hs.222494	NM_024894	HPRD:07849	NOL10	PQBP5	nucleolar protein 10	protein-coding
19-PTNLD28-TUMOR_peak_103900	chr9	77686747	77686856	+	6.69625	NA	intron (NR_023352, intron 5 of 9)	L1MDa|LINE|L1	16332	NM_001127603	54981	Hs.494186	NM_017881	HPRD:09868	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_91834	chr7	30278748	30278842	+	6.69625	NA	Intergenic	Intergenic	-45128	NM_147128	223082	Hs.263912	NM_147128	HPRD:15894	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
19-PTNLD28-TUMOR_peak_108793	chrX	75438283	75438371	+	6.69625	NA	Intergenic	SVA_F|Other|Other	45556	NM_016500	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_75724	chr4	76670486	76670659	+	6.69625	NA	intron (NM_003715, intron 1 of 21)	intron (NM_003715, intron 1 of 21)	20866	NM_001290049	8615	Hs.744877	NM_003715	HPRD:09135	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
19-PTNLD28-TUMOR_peak_107457	chrX	7077323	7077411	+	6.69625	NA	Intergenic	Intergenic	-11136	NM_001135565	8226	Hs.185910	NM_012080	HPRD:02383	HDHD1	DXF68S1E|FAM16AX|GS1|HDHD1A	haloacid dehalogenase-like hydrolase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_34758	chr15	80263418	80263642	+	6.69625	NA	5' UTR (NM_001114735, exon 1 of 3)	5' UTR (NM_001114735, exon 1 of 3)	113	NM_004049	597	Hs.227817	NM_004049	HPRD:03034	BCL2A1	ACC-1|ACC-2|BCL2L5|BFL1|GRS|HBPA1	BCL2-related protein A1	protein-coding
19-PTNLD28-TUMOR_peak_108218	chrX	48227288	48227407	+	6.69625	NA	Intergenic	AluSz|SINE|Alu	-11159	NM_021014	10214	Hs.558445	NM_021014	HPRD:02265	SSX3	CT5.3	synovial sarcoma, X breakpoint 3	protein-coding
19-PTNLD28-TUMOR_peak_76287	chr4	94652000	94652110	+	6.69625	NA	intron (NM_001510, intron 14 of 15)	MER76|LTR|ERVL	-98023	NM_005172	474	Hs.532680	NM_005172	HPRD:03270	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_43156	chr17	67488693	67488860	+	6.69625	NA	intron (NM_002758, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	77938	NM_002758	5608	Hs.463978	NM_002758		MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_25997	chr12	106170350	106170438	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	69842	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_5516	chr1	111573264	111573359	+	6.69625	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-66745	NM_001006945	55791	Hs.25245	NM_018372	HPRD:17975	LRIF1	C1orf103|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_30945	chr14	68961822	68961910	+	6.69625	NA	intron (NM_133509, intron 10 of 10)	intron (NM_133509, intron 10 of 10)	298765	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_52289	chr2	40033473	40033604	+	6.69625	NA	Intergenic	L1PA15|LINE|L1	-27122	NR_028102	80745	Hs.468254	NM_025264	HPRD:15506	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_43414	chr17	73348236	73348395	+	6.69625	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	53474	NM_002086	2885	Hs.444356	NM_002086	HPRD:00150	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor-bound protein 2	protein-coding
19-PTNLD28-TUMOR_peak_50315	chr19	55387045	55387151	+	6.69625	NA	intron (NM_133271, intron 2 of 3)	intron (NM_133271, intron 2 of 3)	1549	NM_002000	2204	Hs.659872	NM_002000	HPRD:00914	FCAR	CD89	Fc fragment of IgA, receptor for	protein-coding
19-PTNLD28-TUMOR_peak_18546	chr11	49932776	49932874	+	6.69625	NA	Intergenic	SVA_B|Other|Other	-41118	NM_001001955	283092	Hs.553668	NM_001001955	HPRD:17720	OR4C13	-	olfactory receptor, family 4, subfamily C, member 13	protein-coding
19-PTNLD28-TUMOR_peak_68992	chr3	72054277	72054442	+	6.69625	NA	Intergenic	LTR8|LTR|ERV1	95247	NR_104116	285286	Hs.559386	NR_104116		LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
19-PTNLD28-TUMOR_peak_98841	chr8	56106678	56106766	+	6.69625	NA	intron (NM_052898, intron 1 of 2)	intron (NM_052898, intron 1 of 2)	91705	NM_052898	114786	Hs.130197	NM_052898		XKR4	XRG4	XK, Kell blood group complex subunit-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_45532	chr18	44742110	44742210	+	6.69625	NA	intron (NM_001278063, intron 6 of 6)	intron (NM_001278063, intron 6 of 6)	33394	NM_001037802	652991	Hs.585834	NM_001037802	ENSG00000215474	SKOR2	CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_81500	chr5	110216211	110216374	+	6.69625	NA	Intergenic	MER57-int|LTR|ERV1	141538	NM_138773	91137	Hs.75639	NM_138773	HPRD:14283	SLC25A46	-	solute carrier family 25, member 46	protein-coding
19-PTNLD28-TUMOR_peak_31984	chr14	99565710	99565953	+	6.69625	NA	Intergenic	Intergenic	172219	NM_022898	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_62037	chr20	52120881	52120969	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-48384	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_21668	chr11	120894771	120894989	+	6.69625	NA	promoter-TSS (NM_152715)	promoter-TSS (NM_152715)	67	NM_152715	219899	Hs.504136	NM_152715		TBCEL	El|LRRC35	tubulin folding cofactor E-like	protein-coding
19-PTNLD28-TUMOR_peak_102448	chr9	21549298	21549439	+	6.69625	NA	intron (NR_027054, intron 1 of 3)	intron (NR_027054, intron 1 of 3)	10329	NR_027054	554202	Hs.458096	NR_027054		MIR31HG	-	MIR31 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_7766	chr1	162374726	162374825	+	6.69625	NA	intron (NM_053282, intron 1 of 3)	L1ME1|LINE|L1	7153	NM_053282	117157	Hs.350581	NM_053282	HPRD:12248	SH2D1B	EAT2	SH2 domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_11774	chr10	4850531	4850641	+	6.69625	NA	Intergenic	Intergenic	-17783	NM_001271021	83592	Hs.657944	NM_031436	HPRD:07472	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	aldo-keto reductase family 1, member E2	protein-coding
19-PTNLD28-TUMOR_peak_80077	chr5	57869125	57869213	+	6.69625	NA	Intergenic	L1PA4|LINE|L1	-9770	NM_138453	115827	Hs.4290	NM_138453	HPRD:06704	RAB3C	-	RAB3C, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_28242	chr13	50380329	50380431	+	6.69625	NA	Intergenic	Intergenic	-13323	NM_002267	3839	Hs.527919	NM_002267	HPRD:03536	KPNA3	IPOA4|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin alpha 3 (importin alpha 4)	protein-coding
19-PTNLD28-TUMOR_peak_12410	chr10	23788344	23788479	+	6.69625	NA	Intergenic	Intergenic	60213	NM_001145373	220213	Hs.499042	NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
19-PTNLD28-TUMOR_peak_12146	chr10	14614139	14614338	+	6.69625	NA	promoter-TSS (NM_001282702)	promoter-TSS (NM_001282702)	-50	NM_001282701	83641	Hs.446315	NM_031453	HPRD:12575	FAM107B	C10orf45	family with sequence similarity 107, member B	protein-coding
19-PTNLD28-TUMOR_peak_99159	chr8	71443951	71444049	+	6.69625	NA	Intergenic	L3|LINE|CR1	60631	NR_110653	101926892	Hs.367827	NR_110653	ENSG00000253967	LOC101926892	-	uncharacterized LOC101926892	ncRNA
19-PTNLD28-TUMOR_peak_31790	chr14	93605617	93605727	+	6.69625	NA	Intergenic	MER20B|DNA|hAT-Charlie	-23409	NM_001142594	3705	Hs.308122	NM_014216	HPRD:03501	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
19-PTNLD28-TUMOR_peak_44820	chr18	19965804	19965985	+	6.69625	NA	Intergenic	Intergenic	31984	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_108636	chrX	68385292	68385429	+	6.69625	NA	promoter-TSS (NM_145119)	promoter-TSS (NM_145119)	5	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_30345	chr14	53829793	53830026	+	6.69625	NA	Intergenic	L1PB4|LINE|L1	209837	NR_110062	101927620		NR_110062	ENSG00000258731	LOC101927620	-	uncharacterized LOC101927620	ncRNA
19-PTNLD28-TUMOR_peak_25730	chr12	97661760	97661848	+	6.69625	NA	Intergenic	Intergenic	-196995	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16016	chr10	123513742	123513833	+	6.69625	NA	intron (NM_001001976, intron 11 of 11)	L1MC4|LINE|L1	-155815	NR_073009	2263	Hs.533683	NM_000141	HPRD:01492	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_77537	chr4	150144925	150145068	+	6.69625	NA	Intergenic	L1PA14|LINE|L1	-781324	NM_001166104	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_33584	chr15	52135234	52135354	+	6.69625	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	13469	NM_014547	29766	Hs.4998	NM_014547	HPRD:10389	TMOD3	UTMOD	tropomodulin 3 (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_75618	chr4	71834897	71835143	+	6.69625	NA	intron (NM_001244766, intron 3 of 6)	AluJr|SINE|Alu	-24245	NM_000788	1633	Hs.709	NM_000788	HPRD:00507	DCK	-	deoxycytidine kinase	protein-coding
19-PTNLD28-TUMOR_peak_30609	chr14	60418641	60418828	+	6.69625	NA	intron (NR_075071, intron 8 of 32)	L1PA2|LINE|L1	32303	NR_075071	341883	Hs.666245	NM_198499	HPRD:13525	LRRC9	-	leucine rich repeat containing 9	pseudo
19-PTNLD28-TUMOR_peak_93781	chr7	86591143	86591231	+	6.69625	NA	intron (NM_001291990, intron 2 of 21)	intron (NM_001291990, intron 2 of 21)	4104	NM_152748	222223	Hs.208093	NM_152748	HPRD:13405	KIAA1324L	EIG121L	KIAA1324-like	protein-coding
19-PTNLD28-TUMOR_peak_68085	chr3	48977514	48977602	+	6.69625	NA	intron (NM_006321, intron 3 of 15)	AluY|SINE|Alu	-20740	NM_001123040	646450	Hs.720727	NM_001123040	ENSG00000221883	ARIH2OS	C3orf71	ariadne homolog 2 opposite strand	protein-coding
19-PTNLD28-TUMOR_peak_52933	chr2	60416582	60416797	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	197891	NR_039631	100616473		NR_039631	miRBase:MI0016772	MIR4432	-	microRNA 4432	ncRNA
19-PTNLD28-TUMOR_peak_61161	chr20	41356797	41356934	+	6.69625	NA	intron (NM_133170, intron 6 of 31)	MER5A|DNA|hAT-Charlie	42742	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
19-PTNLD28-TUMOR_peak_12106	chr10	13578840	13579076	+	6.69625	NA	Intergenic	Intergenic	-33982	NM_152751	222389	Hs.498740	NM_152751	HPRD:12570	BEND7	C10orf30	BEN domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_15078	chr10	98797480	98797568	+	6.69625	NA	intron (NM_003061, intron 21 of 36)	intron (NM_003061, intron 21 of 36)	56483	NM_015652	26148	Hs.14555	NM_015652	HPRD:12563	C10orf12	-	chromosome 10 open reading frame 12	protein-coding
19-PTNLD28-TUMOR_peak_34736	chr15	79244352	79244586	+	6.69625	NA	Intergenic	Intergenic	-7049	NM_004390	1512	Hs.148641	NM_004390		CTSH	ACC-4|ACC-5|CPSB|minichain	cathepsin H	protein-coding
19-PTNLD28-TUMOR_peak_93598	chr7	78346208	78346444	+	6.69625	NA	intron (NM_001301128, intron 2 of 20)	intron (NM_001301128, intron 2 of 20)	-291978	NR_046689	100874021	Hs.128252	NR_046689	ENSG00000226978	MAGI2-AS2	-	MAGI2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_80925	chr5	79603378	79603533	+	6.69625	NA	Intergenic	AluY|SINE|Alu	-7158	NR_004845	644936	Hs.627173	NR_004845		LOC644936	-	actin, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_5120	chr1	98962341	98962436	+	6.69625	NA	Intergenic	MLT1G3-int|LTR|ERVL-MaLR	-164848	NM_015976	51375	Hs.197015	NM_015976	HPRD:15416	SNX7	-	sorting nexin 7	protein-coding
19-PTNLD28-TUMOR_peak_75892	chr4	79636947	79637035	+	6.69625	NA	Intergenic	HERVH-int|LTR|ERV1	-60541	NM_017593	55589	Hs.146551	NM_017593	HPRD:09828	BMP2K	BIKE	BMP2 inducible kinase	protein-coding
19-PTNLD28-TUMOR_peak_69257	chr3	87255440	87255547	+	6.69625	NA	Intergenic	L2c|LINE|L2	19934	NR_039958	100616161		NR_039958	miRBase:MI0017442	MIR4795	-	microRNA 4795	ncRNA
19-PTNLD28-TUMOR_peak_3457	chr1	51535778	51535926	+	6.69625	NA	Intergenic	LOR1b|LTR|ERV1	-32054	NM_001136508	284546	Hs.176177	NM_001136508	ENSG00000204006	C1orf185	-	chromosome 1 open reading frame 185	protein-coding
19-PTNLD28-TUMOR_peak_75575	chr4	68887002	68887147	+	6.69625	NA	Intergenic	L2a|LINE|L2	-23917	NR_033737	644759	Hs.646883	NR_033737	ENSG00000229009	TMPRSS11GP	-	transmembrane protease, serine 11G, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_21228	chr11	112920017	112920178	+	6.69625	NA	intron (NM_181351, intron 2 of 19)	intron (NM_181351, intron 2 of 19)	-85915	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
19-PTNLD28-TUMOR_peak_39818	chr17	4542765	4542853	+	6.69625	NA	exon (NM_001140, exon 2 of 14)	exon (NM_001140, exon 2 of 14)	2151	NM_001140	246	Hs.73809	NM_001140	HPRD:01067	ALOX15	12-LOX|15-LOX-1|15LOX-1	arachidonate 15-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_54596	chr2	102748089	102748230	+	6.69625	NA	intron (NM_001288706, intron 1 of 11)	L1MEc|LINE|L1	-11077	NM_000877	3554	Hs.701982	NM_000877	HPRD:00994	IL1R1	CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80	interleukin 1 receptor, type I	protein-coding
19-PTNLD28-TUMOR_peak_21063	chr11	109957830	109957998	+	6.69625	NA	Intergenic	Intergenic	-6173	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
19-PTNLD28-TUMOR_peak_68463	chr3	55201794	55201902	+	6.69625	NA	Intergenic	L2b|LINE|L2	-239776	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_102612	chr9	31294105	31294199	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-885700	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_15544	chr10	109223740	109223894	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-299351	NM_001013031	114815	Hs.591915	NM_052918	HPRD:12098	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_67978	chr3	47352451	47352615	+	6.69625	NA	intron (NM_025010, intron 1 of 9)	AluY|SINE|Alu	-28196	NM_022342	64147	Hs.373947	NM_022342	HPRD:07444	KIF9	-	kinesin family member 9	protein-coding
19-PTNLD28-TUMOR_peak_14029	chr10	71109139	71109273	+	6.69625	NA	intron (NM_033497, intron 5 of 20)	intron (NM_033497, intron 5 of 20)	30603	NM_000188	3098	Hs.370365	NM_000188	HPRD:00809	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_82918	chr5	143521992	143522080	+	6.69625	NA	Intergenic	Intergenic	28242	NM_030799	81555	Hs.372050	NM_030799	HPRD:18071	YIPF5	FinGER5|SB140|SMAP-5|SMAP5|YIP1A	Yip1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_12221	chr10	17474823	17474947	+	6.69625	NA	intron (NM_001004470, intron 2 of 7)	MER57A1|LTR|ERV1	21369	NM_001004470	338596	Hs.677766	NM_001004470		ST8SIA6	SIA8F|SIAT8F|ST8SIA-VI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_14462	chr10	79352835	79352984	+	6.69625	NA	intron (NM_001271519, intron 1 of 28)	intron (NM_001271519, intron 1 of 28)	44668	NM_001271520	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_31877	chr14	95893481	95893593	+	6.69625	NA	intron (NM_152592, intron 16 of 16)	LTR13|LTR|ERVK	-17110	NR_026779	79686	Hs.41502	NM_024633	HPRD:16606	LINC00341	C14orf139|NCRNA00341	long intergenic non-protein coding RNA 341	ncRNA
19-PTNLD28-TUMOR_peak_52957	chr2	61393227	61393315	+	6.69625	NA	Intergenic	Intergenic	3642	NM_001143959	339804	Hs.140617	NM_001143959	ENSG00000237651	C2orf74	-	chromosome 2 open reading frame 74	protein-coding
19-PTNLD28-TUMOR_peak_48447	chr19	30705728	30705878	+	6.69625	NA	Intergenic	Intergenic	-157525	NM_014717	9745	Hs.378901	NM_014717	HPRD:15825	ZNF536	-	zinc finger protein 536	protein-coding
19-PTNLD28-TUMOR_peak_78449	chr4	187971995	187972094	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-327057	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_59479	chr20	1987678	1987808	+	6.69625	NA	Intergenic	Intergenic	-12812	NM_024411	5173	Hs.22584	NM_024411	HPRD:08838	PDYN	ADCA|PENKB|SCA23	prodynorphin	protein-coding
19-PTNLD28-TUMOR_peak_15628	chr10	112466565	112466765	+	6.69625	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	62510	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
19-PTNLD28-TUMOR_peak_104511	chr9	92912342	92912430	+	6.69625	NA	Intergenic	L1HS|LINE|L1	-108605	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	LOC286370	-	uncharacterized LOC286370	ncRNA
19-PTNLD28-TUMOR_peak_109654	chrX	141183597	141183707	+	6.69625	NA	Intergenic	Intergenic	109424	NM_016249	51438	Hs.123536	NM_016249	HPRD:06632	MAGEC2	CT10|HCA587|MAGEE1	melanoma antigen family C, 2	protein-coding
19-PTNLD28-TUMOR_peak_58858	chr2	232742595	232742813	+	6.69625	NA	Intergenic	Intergenic	14304	NR_031717	100302126		NR_031717	miRBase:MI0007076	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
19-PTNLD28-TUMOR_peak_53698	chr2	83061496	83061584	+	6.69625	NA	Intergenic	AluY|SINE|Alu	-22387	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_73209	chr3	190439225	190439363	+	6.69625	NA	Intergenic	Intergenic	141171	NM_001146686	647309	Hs.518490	NM_001146686	ENSG00000205835	GMNC	GEMC1	geminin coiled-coil domain containing	protein-coding
19-PTNLD28-TUMOR_peak_109347	chrX	120571952	120572040	+	6.69625	NA	Intergenic	L1HS|LINE|L1	390534	NM_012084	2747	Hs.368538	NM_012084	HPRD:02143	GLUD2	GDH2|GLUDP1	glutamate dehydrogenase 2	protein-coding
19-PTNLD28-TUMOR_peak_24463	chr12	53637908	53638002	+	6.69625	NA	Intergenic	AluJr|SINE|Alu	-7415	NM_001170790	84975	Hs.654660	NM_032889	HPRD:14416	MFSD5	hsMOT2	major facilitator superfamily domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_4534	chr1	83499492	83499615	+	6.69625	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-47662	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_107549	chrX	11637605	11637751	+	6.69625	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	46143	NM_013427	395	Hs.435291	NM_001174	HPRD:02124	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
19-PTNLD28-TUMOR_peak_28675	chr13	93458588	93458751	+	6.69625	NA	intron (NM_004466, intron 7 of 7)	Tigger1|DNA|TcMar-Tigger	-84802	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63485	chr21	39201830	39202000	+	6.69625	NA	intron (NM_002240, intron 2 of 3)	intron (NM_002240, intron 2 of 3)	86826	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_16310	chr10	133999238	133999487	+	6.69625	NA	Intergenic	CpG	-1052	NM_006426	10570	Hs.100058	NM_006426	HPRD:07463	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_24265	chr12	52192429	52192527	+	6.69625	NA	intron (NM_014191, intron 26 of 26)	HERVL-int|LTR|ERVL	33223	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_25370	chr12	76358046	76358193	+	6.69625	NA	Intergenic	Intergenic	67437	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_37947	chr16	56237104	56237240	+	6.69625	NA	intron (NM_138736, intron 2 of 7)	MLT1K|LTR|ERVL-MaLR	-8735	NR_026889	26077	Hs.721567	NR_026889	ENSG00000261439	DKFZP434H168	-	uncharacterized LOC26077	ncRNA
19-PTNLD28-TUMOR_peak_98486	chr8	42443135	42443242	+	6.69625	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-45832	NM_006749	6575	Hs.653173	NM_006749	HPRD:08865	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1	solute carrier family 20 (phosphate transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_61956	chr20	50623447	50623625	+	6.69625	NA	Intergenic	MIRb|SINE|MIR	-144084	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
19-PTNLD28-TUMOR_peak_74735	chr4	21950218	21950473	+	6.69625	NA	promoter-TSS (NM_147182)	promoter-TSS (NM_147182)	29	NM_147182	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_76044	chr4	84338871	84339054	+	6.69625	NA	intron (NM_001297755, intron 15 of 16)	intron (NM_001297755, intron 15 of 16)	38074	NM_001297756	113510	Hs.480101	NM_133636	HPRD:08422	HELQ	HEL308	helicase, POLQ-like	protein-coding
19-PTNLD28-TUMOR_peak_28890	chr13	102404035	102404170	+	6.69625	NA	intron (NM_175929, intron 3 of 4)	MER58A|DNA|hAT-Charlie	164893	NM_004115	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
19-PTNLD28-TUMOR_peak_74876	chr4	26994632	26994729	+	6.69625	NA	intron (NM_001169117, intron 3 of 12)	intron (NM_001169117, intron 3 of 12)	132367	NM_020860	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_53983	chr2	88271998	88272090	+	6.69625	NA	intron (NM_001024457, intron 1 of 22).2	CpG	13265	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96498	chr7	152646510	152646814	+	6.69625	NA	Intergenic	L1PB4|LINE|L1	189828	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_72367	chr3	172059444	172059542	+	6.69625	NA	intron (NM_001135095, intron 17 of 25)	MER91B|DNA|hAT-Tip100	106753	NM_198407	2693	Hs.130212	NM_004122	HPRD:03541	GHSR	-	growth hormone secretagogue receptor	protein-coding
19-PTNLD28-TUMOR_peak_28578	chr13	79957101	79957323	+	6.69625	NA	intron (NM_001286632, intron 1 of 20)	L3|LINE|CR1	23144	NM_001286632	64062	Hs.558528	NM_018605	HPRD:12611	RBM26	ARRS2|C13orf10|PPP1R132|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
19-PTNLD28-TUMOR_peak_52452	chr2	43912680	43912785	+	6.69625	NA	intron (NM_172069, intron 3 of 29)	AluJo|SINE|Alu	-9271	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
19-PTNLD28-TUMOR_peak_85898	chr6	21935947	21936143	+	6.69625	NA	intron (NR_015410, intron 5 of 11)	L1MD2|LINE|L1	211377	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	-	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_97071	chr8	8807454	8807560	+	6.69625	NA	Intergenic	Intergenic	-52807	NM_153332	90459	Hs.20000	NM_153332	HPRD:11784	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_20862	chr11	102401308	102401411	+	6.69625	NA	exon (NM_002423, exon 1 of 6)	exon (NM_002423, exon 1 of 6)	119	NM_002423	4316	Hs.2256	NM_002423	HPRD:01525	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7 (matrilysin, uterine)	protein-coding
19-PTNLD28-TUMOR_peak_83512	chr5	157566240	157566384	+	6.69625	NA	Intergenic	Intergenic	270469	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_28614	chr13	81038006	81038117	+	6.69625	NA	Intergenic	Intergenic	-122975	NM_005842	10253	Hs.18676	NM_005842	HPRD:03916	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_25467	chr12	81913946	81914273	+	6.69625	NA	intron (NM_001220474, intron 2 of 30)	MER44D|DNA|TcMar-Tigger	-7939	NM_001282536	8499	Hs.506216	NM_003625	HPRD:04392	PPFIA2	-	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_63044	chr21	29889444	29889542	+	6.69625	NA	Intergenic	MER45R|DNA|hAT-Tip100	-22147	NR_026553	118421	Hs.438549	NR_026552	HPRD:10733	LINC00161	C21orf100|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
19-PTNLD28-TUMOR_peak_14820	chr10	90802436	90802553	+	6.69625	NA	Intergenic	L1MA3|LINE|L1	-20599	NR_039826	100616128		NR_039826		MIR4679-1	-	microRNA 4679-1	ncRNA
19-PTNLD28-TUMOR_peak_73217	chr3	190714329	190714508	+	6.69625	NA	Intergenic	Intergenic	118699	NR_024343	100170222	Hs.717310	NR_024343		SNAR-I	snaR-3	small ILF3/NF90-associated RNA I	snRNA
19-PTNLD28-TUMOR_peak_48704	chr19	36146632	36146723	+	6.69625	NA	intron (NM_001863, intron 3 of 3)	(TC)n|Simple_repeat|Simple_repeat	7552	NM_001863	1340	Hs.431668	NM_001863	HPRD:00493	COX6B1	COX6B|COXG|COXVIb1	cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_23089	chr12	12502751	12502885	+	6.69625	NA	intron (NM_018050, intron 1 of 3)	intron (NM_018050, intron 1 of 3)	351	NM_018050	54682	Hs.591145	NM_018050	HPRD:10067	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_68926	chr3	69474550	69474638	+	6.69625	NA	Intergenic	Intergenic	-39139	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_104128	chr9	84646605	84646706	+	6.69625	NA	Intergenic	Intergenic	42968	NM_001001670	389763	Hs.209545	NM_001001670	HPRD:13531	SPATA31D1	FAM75D1	SPATA31 subfamily D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_9059	chr1	197705863	197706055	+	6.69625	NA	intron (NM_001300858, intron 2 of 15)	intron (NM_001300858, intron 2 of 15)	38664	NM_001300858	163486	Hs.125056	NM_019049	HPRD:13303	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_84049	chr5	172721064	172721240	+	6.69625	NA	Intergenic	CpG	35354	NM_003714	8614	Hs.233160	NM_003714	HPRD:04717	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
19-PTNLD28-TUMOR_peak_21719	chr11	122086184	122086335	+	6.69625	NA	Intergenic	Intergenic	-12489	NR_024430	399959	Hs.44098	NR_024430	ENSG00000255248	MIR100HG	AGD1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_60023	chr20	18178449	18178647	+	6.69625	NA	Intergenic	AluSx|SINE|Alu	52805	NR_028402	57325	Hs.488051	NM_020536	HPRD:16765	CSRP2BP	ATAC2|CRP2BP|KAT14|PRO1194|dJ717M23.1	CSRP2 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_81762	chr5	120237026	120237126	+	6.69625	NA	Intergenic	Intergenic	-421169	NR_104999	102467226		NR_104999		LOC102467226	-	uncharacterized LOC102467226	ncRNA
19-PTNLD28-TUMOR_peak_108869	chrX	84989090	84989219	+	6.69625	NA	Intergenic	L1HS|LINE|L1	313412	NM_000390	1121	Hs.496449	NM_000390	HPRD:02312	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	choroideremia (Rab escort protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_23354	chr12	21179352	21179478	+	6.69625	NA	intron (NM_001009562, intron 5 of 12)	Tigger2|DNA|TcMar-Tigger	10785	NM_001009562	338821	Hs.729117	NM_001009562	HPRD:17455	SLCO1B7	LST-3|LST-3TM12|LST3|SLC21A21	solute carrier organic anion transporter family, member 1B7 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_12294	chr10	20887732	20887822	+	6.69625	NA	Intergenic	Intergenic	46878	NR_039822	100616383		NR_039822	miRBase:MI0017306	MIR4675	-	microRNA 4675	ncRNA
19-PTNLD28-TUMOR_peak_15110	chr10	99320661	99320749	+	6.69625	NA	intron (NM_024954, intron 1 of 2)	Harlequin-int|LTR|ERV1	-11493	NM_001291218	26287	Hs.73708	NM_020349	HPRD:12460	ANKRD2	ARPP	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding
19-PTNLD28-TUMOR_peak_92743	chr7	57599748	57599918	+	6.69625	NA	Intergenic	L1HS|LINE|L1	89950	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
19-PTNLD28-TUMOR_peak_64224	chr22	17980855	17980943	+	6.69625	NA	intron (NM_001290046, intron 5 of 18)	intron (NM_001290046, intron 5 of 18)	24271	NM_001290047	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	cat eye syndrome chromosome region, candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_45840	chr18	53144806	53144960	+	6.69625	NA	intron (NM_001243227, intron 2 of 18)	intron (NM_001243227, intron 2 of 18)	-1569	NR_039754	100616290		NR_039754	miRBase:MI0016896	MIR4529	-	microRNA 4529	ncRNA
19-PTNLD28-TUMOR_peak_98983	chr8	62763085	62763234	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	135812	NR_039680	100616484		NR_039680	miRBase:MI0016821	MIR4470	-	microRNA 4470	ncRNA
19-PTNLD28-TUMOR_peak_21347	chr11	115570530	115570759	+	6.69625	NA	Intergenic	Intergenic	60274	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_74533	chr4	11616158	11616349	+	6.69625	NA	Intergenic	Intergenic	-185716	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_69232	chr3	84452834	84452923	+	6.69625	NA	Intergenic	L1PA5|LINE|L1	465848	NR_033860	440970	Hs.411049	NR_033860	ENSG00000242641	LINC00971	-	long intergenic non-protein coding RNA 971	ncRNA
19-PTNLD28-TUMOR_peak_68865	chr3	66866707	66866809	+	6.69625	NA	Intergenic	Intergenic	-181969	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_99578	chr8	96249547	96249635	+	6.69625	NA	Intergenic	Intergenic	-20989	NR_046232	619344	Hs.741630	NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
19-PTNLD28-TUMOR_peak_80762	chr5	75155394	75155624	+	6.69625	NA	Intergenic	LTR14C|LTR|ERVK	-142196	NM_001099271	134359	Hs.432726	NM_152408	HPRD:08188	POC5	C5orf37	POC5 centriolar protein	protein-coding
19-PTNLD28-TUMOR_peak_30205	chr14	50574315	50574496	+	6.69625	NA	TTS (NM_024558)	TTS (NM_024558)	8892	NM_001040662	79609	Hs.558541	NM_024558	HPRD:16605	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_80005	chr5	56134325	56134618	+	6.69625	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	23571	NM_005921	4214	Hs.653654	NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_108443	chrX	55737352	55737581	+	6.69625	NA	Intergenic	MER51-int|LTR|ERV1	-6644	NM_016656	10325	Hs.50282	NM_006064	HPRD:06710	RRAGB	RAGB|bA465E19.1	Ras-related GTP binding B	protein-coding
19-PTNLD28-TUMOR_peak_87697	chr6	44398998	44399087	+	6.69625	NA	intron (NM_001253, intron 14 of 15)	intron (NM_001253, intron 14 of 15)	-4336	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_104646	chr9	96057481	96057599	+	6.69625	NA	intron (NM_006648, intron 22 of 28)	intron (NM_006648, intron 22 of 28)	51156	NM_001098808	445577	Hs.575636	NM_001098808	ENSG00000204352	C9orf129	bA165J3.3	chromosome 9 open reading frame 129	protein-coding
19-PTNLD28-TUMOR_peak_53684	chr2	80787549	80787662	+	6.69625	NA	intron (NM_001282597, intron 12 of 18)	intron (NM_001282597, intron 12 of 18)	247101	NM_001282599	1496	Hs.167368	NM_004389	HPRD:00228	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin (cadherin-associated protein), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_28382	chr13	59840972	59841068	+	6.69625	NA	Intergenic	Intergenic	-745832	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81855	chr5	124019732	124019829	+	6.69625	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	61025	NM_020747	57507	Hs.266616	NM_020747	HPRD:18357	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
19-PTNLD28-TUMOR_peak_13267	chr10	45072523	45072627	+	6.69625	NA	Intergenic	Intergenic	-192030	NM_001033886	6387	Hs.522891	NM_000609	HPRD:02904	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	chemokine (C-X-C motif) ligand 12	protein-coding
19-PTNLD28-TUMOR_peak_67881	chr3	45704225	45704317	+	6.69625	NA	intron (NM_014240, intron 2 of 7)	AluSx1|SINE|Alu	26103	NR_033947	644714	Hs.712889	NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86061	chr6	25934528	25934661	+	6.69625	NA	Intergenic	L2c|LINE|L2	-3640	NM_005835	10246	Hs.591802	NM_005835	HPRD:10232	SLC17A2	NPT3	solute carrier family 17, member 2	protein-coding
19-PTNLD28-TUMOR_peak_23060	chr12	11932389	11932479	+	6.69625	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	129646	NM_001987	2120	Hs.504765	NM_001987	HPRD:15976	ETV6	TEL|TEL/ABL	ets variant 6	protein-coding
19-PTNLD28-TUMOR_peak_44726	chr18	13813410	13813562	+	6.69625	NA	Intergenic	Intergenic	-12057	NM_005913	4161	Hs.248145	NM_005913	HPRD:08965	MC5R	MC2	melanocortin 5 receptor	protein-coding
19-PTNLD28-TUMOR_peak_51507	chr2	21873613	21873733	+	6.69625	NA	Intergenic	Intergenic	59851	NR_038837	645949	Hs.456782	NR_038837	ENSG00000229621	LOC645949	-	uncharacterized LOC645949	ncRNA
19-PTNLD28-TUMOR_peak_103885	chr9	76951182	76951275	+	6.69625	NA	intron (NR_106746, intron 3 of 7)	intron (NR_106746, intron 3 of 7)	-35219	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
19-PTNLD28-TUMOR_peak_20692	chr11	95364993	95365081	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	157917	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_982	chr1	15527290	15527468	+	6.69625	NA	intron (NM_018022, intron 1 of 2)	intron (NM_018022, intron 1 of 2)	-29259	NM_001278502	727684	Hs.667584	NM_001278501		C1orf195	-	chromosome 1 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_3445	chr1	50904724	50904877	+	6.69625	NA	Intergenic	Intergenic	-15681	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
19-PTNLD28-TUMOR_peak_31176	chr14	72398746	72399191	+	6.69625	NA	promoter-TSS (NM_001204422)	promoter-TSS (NM_001204422)	151	NM_001204423	9628	Hs.509872	NM_004296	ENSG00000182732	RGS6	GAP	regulator of G-protein signaling 6	protein-coding
19-PTNLD28-TUMOR_peak_67473	chr3	34424498	34424596	+	6.69625	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	584484	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_63466	chr21	38835606	38835737	+	6.69625	NA	intron (NM_101395, intron 3 of 12)	L2b|LINE|L2	43069	NM_001396	1859	Hs.368240	NM_001396	HPRD:09018	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	protein-coding
19-PTNLD28-TUMOR_peak_83510	chr5	157502432	157502547	+	6.69625	NA	Intergenic	Intergenic	-216306	NM_001195556	9685	Hs.644000	NM_014666	HPRD:06273	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
19-PTNLD28-TUMOR_peak_102182	chr9	12640993	12641090	+	6.69625	NA	Intergenic	Intergenic	-52345	NM_000550	7306	Hs.270279	NM_000550	HPRD:00283	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25186	chr12	69411744	69411951	+	6.69625	NA	Intergenic	Intergenic	-54827	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_98016	chr8	30085257	30085396	+	6.69625	NA	intron (NR_039605, intron 1 of 1)	intron (NR_039605, intron 1 of 1)	22887	NR_039605	100616190		NR_039605		MIR548O2	-	microRNA 548o-2	ncRNA
19-PTNLD28-TUMOR_peak_71802	chr3	152863406	152863556	+	6.69625	NA	Intergenic	L1ME3B|LINE|L1	-16520	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_69888	chr3	113455519	113455624	+	6.69625	NA	intron (NM_025146, intron 1 of 4)	FLAM_A|SINE|Alu	9549	NM_025146	80218	Hs.372378	NM_025146	HPRD:14350	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNAT5|hSAN	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_109698	chrX	148265491	148265668	+	6.69625	NA	Intergenic	L1HS|LINE|L1	321305	NM_000202	3423	Hs.460960	NM_000202	HPRD:02402	IDS	MPS2|SIDS	iduronate 2-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_18212	chr11	43873659	43873836	+	6.69625	NA	intron (NM_016142, intron 9 of 10)	intron (NM_016142, intron 9 of 10)	-28610	NM_139178	221120	Hs.720708	NM_139178	HPRD:16793	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1	alkB, alkylation repair homolog 3 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_35522	chr15	101555542	101555630	+	6.69625	NA	exon (NM_024652, exon 12 of 34)	exon (NM_024652, exon 12 of 34)	96126	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_34747	chr15	79783618	79783729	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	58815	NM_015206	23251	Hs.301654	NM_015206	HPRD:17206	KIAA1024	-	KIAA1024	protein-coding
19-PTNLD28-TUMOR_peak_24190	chr12	50612295	50612409	+	6.69625	NA	intron (NM_001113546, intron 4 of 10)	intron (NM_001113546, intron 4 of 10)	4136	NM_001113547	51474	Hs.525419	NM_016357	HPRD:09755	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_12750	chr10	30880277	30880455	+	6.69625	NA	Intergenic	Intergenic	38281	NM_183058	119180	Hs.522610	NM_183058	HPRD:14337	LYZL2	-	lysozyme-like 2	protein-coding
19-PTNLD28-TUMOR_peak_91443	chr7	18705858	18706046	+	6.69625	NA	exon (NM_001204145, exon 11 of 11)	exon (NM_001204145, exon 11 of 11)	157052	NM_001204148	9734	Hs.196054	NM_014707	HPRD:05944	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
19-PTNLD28-TUMOR_peak_75408	chr4	56915751	56915873	+	6.69625	NA	Intergenic	CpG	100838	NM_025009	9662	Hs.518767	NM_014645	HPRD:09954	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_30597	chr14	59906590	59906726	+	6.69625	NA	Intergenic	LTR16A|LTR|ERVL	25401	NM_022571	64582	Hs.647573	NM_022571		GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
19-PTNLD28-TUMOR_peak_104269	chr9	88225134	88225234	+	6.69625	NA	intron (NM_001286715, intron 16 of 24)	intron (NM_001286715, intron 16 of 24)	131760	NM_001286715	23287	Hs.719980	NM_015239	HPRD:08442	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100180	chr8	116954346	116954557	+	6.69625	NA	Intergenic	Intergenic	-273196	NM_014112	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_63144	chr21	32953224	32953322	+	6.69625	NA	Intergenic	Intergenic	-21983	NM_003253	7074	Hs.517228	NM_003253	HPRD:02820	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding
19-PTNLD28-TUMOR_peak_45124	chr18	29823440	29823567	+	6.69625	NA	Intergenic	Intergenic	53516	NM_005925	4225	Hs.194777	NM_005925	HPRD:02667	MEP1B	-	meprin A, beta	protein-coding
19-PTNLD28-TUMOR_peak_94898	chr7	115957391	115957603	+	6.69625	NA	Intergenic	Intergenic	94492	NM_152829	26136	Hs.592286	NM_015641	HPRD:05833	TES	TESS|TESS-2	testis derived transcript (3 LIM domains)	protein-coding
19-PTNLD28-TUMOR_peak_67357	chr3	30667487	30667645	+	6.69625	NA	intron (NM_001024847, intron 2 of 7)	MER5B|DNA|hAT-Charlie	19572	NM_003242	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_104608	chr9	95468913	95469001	+	6.69625	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-36410	NM_022755	64768	Hs.459896	NM_022755	HPRD:10799	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding
19-PTNLD28-TUMOR_peak_80266	chr5	64808592	64808680	+	6.69625	NA	Intergenic	L1MC2|LINE|L1	-30932	NM_197941	11174	Hs.482291	NM_197941	HPRD:05421	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	protein-coding
19-PTNLD28-TUMOR_peak_79904	chr5	54338863	54338969	+	6.69625	NA	Intergenic	Intergenic	18809	NM_002104	3003	Hs.277937	NM_002104		GZMK	TRYP2	granzyme K (granzyme 3; tryptase II)	protein-coding
19-PTNLD28-TUMOR_peak_18186	chr11	43056740	43056861	+	6.69625	NA	Intergenic	Intergenic	234119	NR_033868	399881	Hs.446761	NR_033868	ENSG00000251557	HNRNPKP3	-	heterogeneous nuclear ribonucleoprotein K pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_107441	chrX	6485770	6485890	+	6.69625	NA	Intergenic	MER11D|LTR|ERVK	-32671	NM_016379	51481	Hs.170076	NM_016379	HPRD:18280	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
19-PTNLD28-TUMOR_peak_39936	chr17	6908234	6908349	+	6.69625	NA	intron (NM_000697, intron 8 of 13)	MIR|SINE|MIR	7362	NR_040089	100506713	Hs.422967	NR_040089	ENSG00000215067	LOC100506713	-	uncharacterized LOC100506713	ncRNA
19-PTNLD28-TUMOR_peak_34825	chr15	82122013	82122132	+	6.69625	NA	Intergenic	MER20B|DNA|hAT-Charlie	216412	NM_032246	84206	Hs.104744	NM_032246	HPRD:15256	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
19-PTNLD28-TUMOR_peak_34203	chr15	69351576	69351751	+	6.69625	NA	intron (NR_031680, intron 3 of 4)	intron (NR_031680, intron 3 of 4)	-21527	NR_026949	283673	Hs.177927	NM_173610	HPRD:08746	LINC00277	NCRNA00277|TMEM84	long intergenic non-protein coding RNA 277	ncRNA
19-PTNLD28-TUMOR_peak_69494	chr3	101948036	101948129	+	6.69625	NA	Intergenic	Intergenic	-205777	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4410	chr1	77013702	77013855	+	6.69625	NA	intron (NM_152996, intron 3 of 4)	intron (NM_152996, intron 3 of 4)	-319408	NM_030965	81849	Hs.303609	NM_030965		ST6GALNAC5	SIAT7E|ST6GalNAcV	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_108794	chrX	75439529	75439617	+	6.69625	NA	Intergenic	SVA_F|Other|Other	46802	NM_016500	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_28297	chr13	52389117	52389467	+	6.69625	NA	non-coding (NR_027048, exon 3 of 3)	non-coding (NR_027048, exon 3 of 3)	-10994	NM_024705	79758	Hs.266728	NM_024705	HPRD:07833	DHRS12	SDR40C1	dehydrogenase/reductase (SDR family) member 12	protein-coding
19-PTNLD28-TUMOR_peak_36996	chr16	27879041	27879144	+	6.69625	NA	intron (NM_144675, intron 2 of 5)	intron (NM_144675, intron 2 of 5)	20386	NM_144675	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_55173	chr2	115761996	115762193	+	6.69625	NA	intron (NM_001178036, intron 2 of 26)	L1PA3|LINE|L1	-60153	NM_001178037	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_21839	chr11	124155644	124155739	+	6.69625	NA	Intergenic	L1PREC2|LINE|L1	20968	NM_001005198	219865	Hs.722725	NM_001005198	HPRD:17790	OR8G5	OR11-298|OR8G5P|OR8G6	olfactory receptor, family 8, subfamily G, member 5	protein-coding
19-PTNLD28-TUMOR_peak_31703	chr14	92031267	92031448	+	6.69625	NA	Intergenic	AluSg7|SINE|Alu	-54533	NM_001284281	55671	Hs.533887	NM_017936	HPRD:11176	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding
19-PTNLD28-TUMOR_peak_11072	chr1	235333431	235333519	+	6.69625	NA	intron (NM_001206794, intron 23 of 23)	intron (NM_001206794, intron 23 of 23)	-8904	NR_027762	23029	Hs.535224	NM_015014	HPRD:11065	RBM34	-	RNA binding motif protein 34	protein-coding
19-PTNLD28-TUMOR_peak_84808	chr6	2738768	2738866	+	6.69625	NA	intron (NM_001012418, intron 2 of 12)	intron (NM_001012418, intron 2 of 12)	12337	NM_001012418	340156	Hs.127830	NM_001012418	HPRD:17355	MYLK4	SgK085	myosin light chain kinase family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_25708	chr12	96821302	96821391	+	6.69625	NA	Intergenic	Intergenic	-26980	NM_001170464	5128	Hs.506415	NM_002595	HPRD:09141	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
19-PTNLD28-TUMOR_peak_88563	chr6	84521418	84521506	+	6.69625	NA	Intergenic	AluYa5|SINE|Alu	-41523	NM_001009994	134701	Hs.149454	NM_001009994	HPRD:16658	RIPPLY2	C6orf159|dJ237I15.1	ripply transcriptional repressor 2	protein-coding
19-PTNLD28-TUMOR_peak_9863	chr1	209091236	209091352	+	6.69625	NA	Intergenic	Intergenic	-510874	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_98972	chr8	62008802	62008890	+	6.69625	NA	Intergenic	Intergenic	-128539	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_12371	chr10	22944683	22944934	+	6.69625	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	58695	NM_005028	5305	Hs.57079	NM_005028	HPRD:11931	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_68642	chr3	59410477	59410595	+	6.69625	NA	Intergenic	MER58A|DNA|hAT-Charlie	-374821	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_89321	chr6	123317351	123317489	+	6.69625	NA	5' UTR (NM_001010852, exon 1 of 6)	5' UTR (NM_001010852, exon 1 of 6)	304	NM_001010852	134829	Hs.486361	NM_001010852		CLVS2	C6orf212|C6orf213|RLBP1L2|bA160A10.4	clavesin 2	protein-coding
19-PTNLD28-TUMOR_peak_40214	chr17	11511824	11512109	+	6.69625	NA	intron (NM_001372, intron 2 of 68)	intron (NM_001372, intron 2 of 68)	10218	NM_001372	1770	Hs.567259	NM_001372	HPRD:04511	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	dynein, axonemal, heavy chain 9	protein-coding
19-PTNLD28-TUMOR_peak_41031	chr17	32395804	32395892	+	6.69625	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	87977	NM_001094	40	Hs.368417	NM_001094	HPRD:03471	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid-sensing (proton-gated) ion channel 2	protein-coding
19-PTNLD28-TUMOR_peak_44528	chr18	9971471	9971566	+	6.69625	NA	Intergenic	Intergenic	57563	NM_003574	9218	Hs.165195	NM_003574	HPRD:09299	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa	protein-coding
19-PTNLD28-TUMOR_peak_62914	chr21	19901711	19901829	+	6.69625	NA	Intergenic	Intergenic	-125800	NM_002772	5651	Hs.149473	NM_002772	HPRD:05972	TMPRSS15	ENTK|PRSS7	transmembrane protease, serine 15	protein-coding
19-PTNLD28-TUMOR_peak_62436	chr20	58692124	58692263	+	6.69625	NA	Intergenic	Intergenic	-21355	NR_046099	284757	Hs.737441	NM_001004305	HPRD:17342	MIR646HG	-	MIR646 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_18593	chr11	56402990	56403079	+	6.69625	NA	Intergenic	AluY|SINE|Alu	6881	NM_001002925	338675	Hs.449692	NM_001002925	HPRD:17749	OR5AP2	OR9J1	olfactory receptor, family 5, subfamily AP, member 2	protein-coding
19-PTNLD28-TUMOR_peak_33776	chr15	59514429	59514522	+	6.69625	NA	intron (NM_004998, intron 9 of 27)	intron (NM_004998, intron 9 of 27)	15460	NM_033195	92483	Hs.307052	NM_033195	HPRD:13981	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A-like 6B	protein-coding
19-PTNLD28-TUMOR_peak_22091	chr11	129201841	129202016	+	6.69625	NA	Intergenic	Intergenic	-43953	NM_003658	8538	Hs.591944	NM_003658	HPRD:16074	BARX2	-	BARX homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_7975	chr1	167275304	167275401	+	6.69625	NA	intron (NR_037163, intron 2 of 16)	intron (NR_037163, intron 2 of 16)	-22929	NM_001198783	5451	Hs.283402	NM_002697	HPRD:01250	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_28526	chr13	77285747	77285890	+	6.69625	NA	Intergenic	Intergenic	174722	NM_138444	115207	Hs.644125	NM_138444	HPRD:11060	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_37676	chr16	48492424	48492545	+	6.69625	NA	Intergenic	L1ME3A|LINE|L1	-73255	NM_003031	6477	Hs.706828	NM_003031	HPRD:03736	SIAH1	SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_58174	chr2	211449677	211449765	+	6.69625	NA	intron (NM_001875, intron 6 of 37)	L2c|LINE|L2	-8358	NM_001122634	1373	Hs.149252	NM_001875	HPRD:01995	CPS1	CPSASE1|PHN	carbamoyl-phosphate synthase 1, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_108862	chrX	83984866	83984965	+	6.69625	NA	Intergenic	L1PA15-16|LINE|L1	-204242	NR_024062	100131816	Hs.460809	NM_178567	ENSG00000229547	UBE2DNL	-	ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_74693	chr4	19510201	19510369	+	6.69625	NA	Intergenic	Intergenic	-744902	NM_001289135	9353	Hs.29802	NM_004787	HPRD:04776	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44786	chr18	19069236	19069335	+	6.69625	NA	intron (NM_001142966, intron 18 of 32)	intron (NM_001142966, intron 18 of 32)	111408	NM_052911	114799	Hs.464733	NM_052911	HPRD:16868	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_8339	chr1	175343082	175343170	+	6.69625	NA	intron (NM_003285, intron 9 of 22)	intron (NM_003285, intron 9 of 22)	-180897	NM_001162894	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_33576	chr15	51942257	51942355	+	6.69625	NA	Intergenic	Intergenic	-27339	NM_001174116	23312	Hs.511386	NM_015263	HPRD:10188	DMXL2	RC3	Dmx-like 2	protein-coding
19-PTNLD28-TUMOR_peak_14117	chr10	72130652	72130749	+	6.69625	NA	intron (NM_001278214, intron 1 of 3)	AluJr|SINE|Alu	5835	NM_001278213	55222	Hs.7778	NM_018205	HPRD:14314	LRRC20	-	leucine rich repeat containing 20	protein-coding
19-PTNLD28-TUMOR_peak_33101	chr15	39000196	39000286	+	6.69625	NA	Intergenic	Intergenic	11442	NM_207444	400359	Hs.448785	NM_207444	HPRD:13418	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_20378	chr11	84148632	84148975	+	6.69625	NA	intron (NM_001364, intron 2 of 22)	intron (NM_001364, intron 2 of 22)	-120421	NM_001206769	1740	Hs.367656	NM_001364	HPRD:04663	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34748	chr15	79888492	79888642	+	6.69625	NA	Intergenic	Intergenic	163709	NM_015206	23251	Hs.301654	NM_015206	HPRD:17206	KIAA1024	-	KIAA1024	protein-coding
19-PTNLD28-TUMOR_peak_4566	chr1	84908030	84908193	+	6.69625	NA	Intergenic	Intergenic	34077	NM_058248	58511	Hs.129142	NM_021233	HPRD:09728	DNASE2B	DLAD	deoxyribonuclease II beta	protein-coding
19-PTNLD28-TUMOR_peak_63615	chr21	41526847	41527149	+	6.69625	NA	intron (NR_073202, intron 16 of 32)	intron (NR_073202, intron 16 of 32)	57360	NR_039917	100616148		NR_039917		MIR4760	-	microRNA 4760	ncRNA
19-PTNLD28-TUMOR_peak_66375	chr3	8574024	8574168	+	6.69625	NA	intron (NM_001278233, intron 1 of 4)	intron (NM_001278233, intron 1 of 4)	30603	NM_001278234	29995	Hs.475353	NM_014583	HPRD:06891	LMCD1	-	LIM and cysteine-rich domains 1	protein-coding
19-PTNLD28-TUMOR_peak_105343	chr9	112492649	112492813	+	6.69625	NA	intron (NM_001037293, intron 1 of 6)	intron (NM_001037293, intron 1 of 6)	-49846	NM_147150	445815	Hs.591908	NM_007203	HPRD:09197	PALM2-AKAP2	AKAP2	PALM2-AKAP2 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_85868	chr6	21331569	21331667	+	6.69625	NA	Intergenic	Intergenic	180505	NR_103790	100874531	Hs.112750	NR_103790		LINC00581	-	long intergenic non-protein coding RNA 581	ncRNA
19-PTNLD28-TUMOR_peak_12392	chr10	23478637	23478744	+	6.69625	NA	Intergenic	Intergenic	-2770	NM_178161	256297	Hs.351503	NM_178161	HPRD:09526	PTF1A	PACA|PAGEN2|PTF1-p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding
19-PTNLD28-TUMOR_peak_27857	chr13	37145658	37145769	+	6.69625	NA	Intergenic	Intergenic	-102336	NM_203451	400120	Hs.422375	NM_203451	HPRD:14219	SERTM1	C13orf36	serine-rich and transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69165	chr3	76263786	76263874	+	6.69625	NA	Intergenic	L1PA4|LINE|L1	-429096	NM_001290210	100131827	Hs.556877	NM_001128223	ENSG00000227124	ZNF717	X17|ZNF838	zinc finger protein 717	protein-coding
19-PTNLD28-TUMOR_peak_15564	chr10	111612326	111612422	+	6.69625	NA	Intergenic	Intergenic	70937	NM_001167604	7511	Hs.390623	NM_020383	HPRD:03899	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_86865	chr6	33589548	33589952	+	6.69625	NA	intron (NM_002224, intron 1 of 57)	CpG	594	NM_002224	3710	Hs.65758	NM_002224	HPRD:00926	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_31052	chr14	70070440	70070540	+	6.69625	NA	Intergenic	Intergenic	-7820	NM_014734	9766	Hs.440025	NM_014734	HPRD:10010	KIAA0247	-	KIAA0247	protein-coding
19-PTNLD28-TUMOR_peak_35185	chr15	90686512	90686608	+	6.69625	NA	Intergenic	Intergenic	-40774	NM_002168	3418	Hs.596461	NM_002168	HPRD:00973	IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_28261	chr13	51103366	51103656	+	6.69625	NA	TTS (NR_109974)	TTS (NR_109974)	-1926	NR_125753	103689915	Hs.722230	NR_125753		DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15079	chr10	98818304	98818498	+	6.69625	NA	intron (NM_003061, intron 11 of 36)	intron (NM_003061, intron 11 of 36)	-44112	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_85636	chr6	16206885	16206991	+	6.69625	NA	Intergenic	Intergenic	-31873	NM_006877	2766	Hs.484741	NM_006877	HPRD:00754	GMPR	GMPR1	guanosine monophosphate reductase	protein-coding
19-PTNLD28-TUMOR_peak_68857	chr3	66743904	66743992	+	6.69625	NA	Intergenic	Intergenic	-193103	NM_015541	26018	Hs.518055	NM_015541	HPRD:10057	LRIG1	LIG-1|LIG1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_62171	chr20	54782691	54782824	+	6.69625	NA	Intergenic	Intergenic	-41031	NM_019888	4159	Hs.248018	NM_019888	HPRD:01115	MC3R	BMIQ9|MC3|MC3-R|OB20|OQTL	melanocortin 3 receptor	protein-coding
19-PTNLD28-TUMOR_peak_93771	chr7	86099122	86099219	+	6.69625	NA	Intergenic	Intergenic	-174060	NM_000840	2913	Hs.590575	NM_000840	HPRD:03070	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate receptor, metabotropic 3	protein-coding
19-PTNLD28-TUMOR_peak_78483	chr4	190013891	190014012	+	6.69625	NA	Intergenic	MER51B|LTR|ERV1	-566809	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_43153	chr17	67341168	67341333	+	6.69625	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-17927	NM_172232	23461	Hs.731824	NM_018672	HPRD:09789	ABCA5	ABC13|EST90625	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding
19-PTNLD28-TUMOR_peak_38173	chr16	62776439	62776532	+	6.69625	NA	Intergenic	AluY|SINE|Alu	-705746	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_67791	chr3	44158888	44159067	+	6.69625	NA	Intergenic	Intergenic	3273	NR_029700	406929		NR_029700	miRBase:MI0000476	MIR138-1	MIRN138-1	microRNA 138-1	ncRNA
19-PTNLD28-TUMOR_peak_57358	chr2	186448318	186448413	+	6.69625	NA	Intergenic	L1M1|LINE|L1	-154990	NM_173651	401024	Hs.98025	NM_173651	HPRD:13483	FSIP2	-	fibrous sheath interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_54595	chr2	102728375	102728497	+	6.69625	NA	intron (NM_001288706, intron 1 of 11)	intron (NM_001288706, intron 1 of 11)	-30800	NM_000877	3554	Hs.701982	NM_000877	HPRD:00994	IL1R1	CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80	interleukin 1 receptor, type I	protein-coding
19-PTNLD28-TUMOR_peak_9829	chr1	207981135	207981224	+	6.69625	NA	Intergenic	Intergenic	-5311	NR_029518	407025		NR_029518	miRBase:MI0000107	MIR29B2	MIRN29B2|mir-29b-2	microRNA 29b-2	ncRNA
19-PTNLD28-TUMOR_peak_81705	chr5	116479191	116479279	+	6.69625	NA	Intergenic	Intergenic	-271973	NR_046089	728342	Hs.434420	NR_046089		LINC00992	-	long intergenic non-protein coding RNA 992	ncRNA
19-PTNLD28-TUMOR_peak_28896	chr13	103113208	103113415	+	6.69625	NA	Intergenic	Intergenic	-59187	NM_175929	2259	Hs.508616	NM_004115		FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
19-PTNLD28-TUMOR_peak_27945	chr13	41092796	41093007	+	6.69625	NA	Intergenic	Intergenic	-37758	NR_024505	646982	Hs.287664	NR_024505		LINC00598	TTL	long intergenic non-protein coding RNA 598	ncRNA
19-PTNLD28-TUMOR_peak_38654	chr16	72405313	72405411	+	6.69625	NA	Intergenic	Intergenic	-199013	NM_001160213	83449	Hs.714939	NM_031293	HPRD:10157	PMFBP1	-	polyamine modulated factor 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46708	chr19	3142314	3142412	+	6.69625	NA	non-coding (NR_110670, exon 4 of 4)	non-coding (NR_110670, exon 4 of 4)	6333	NM_002068	2769	Hs.73797	NM_002068	HPRD:00760	GNA15	GNA16	guanine nucleotide binding protein (G protein), alpha 15 (Gq class)	protein-coding
19-PTNLD28-TUMOR_peak_81967	chr5	127088236	127088327	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	99574	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
19-PTNLD28-TUMOR_peak_38905	chr16	80022868	80023027	+	6.69625	NA	Intergenic	Intergenic	193801	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_459	chr1	7641324	7641468	+	6.69625	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-189933	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_5195	chr1	101326129	101326217	+	6.69625	NA	Intergenic	Intergenic	34562	NM_001261442	2135	Hs.357637	NM_001439	HPRD:03876	EXTL2	EXTR2	exostosin-like glycosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_85916	chr6	22756680	22756817	+	6.69625	NA	Intergenic	L2c|LINE|L2	187070	NM_138574	154150	Hs.629246	NM_138574	HPRD:17935	HDGFL1	PWWP1|dJ309H15.1	hepatoma derived growth factor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_69288	chr3	89382140	89382297	+	6.69625	NA	intron (NM_182644, intron 3 of 6)	intron (NM_182644, intron 3 of 6)	225544	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_37728	chr16	49955918	49956006	+	6.69625	NA	Intergenic	Intergenic	-64132	NM_001271620	23090	Hs.530930	NM_015069	HPRD:05189	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104	zinc finger protein 423	protein-coding
19-PTNLD28-TUMOR_peak_108398	chrX	53754058	53754156	+	6.69625	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-40433	NM_031407	10075	Hs.136905	NM_031407	HPRD:06608	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_82932	chr5	144875451	144875539	+	6.69625	NA	Intergenic	Intergenic	339437	NM_138492	153768	Hs.314261	NM_138492	HPRD:14479	PRELID2	-	PRELI domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_34807	chr15	81558261	81558429	+	6.69625	NA	intron (NM_001172128, intron 4 of 18)	intron (NM_001172128, intron 4 of 18)	-30909	NM_004513	3603	Hs.459095	NM_004513	HPRD:04329	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
19-PTNLD28-TUMOR_peak_37753	chr16	50394824	50395010	+	6.69625	NA	intron (NM_001173984, intron 2 of 16)	intron (NM_001173984, intron 2 of 16)	7928	NM_013263	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_3567	chr1	53826896	53826990	+	6.69625	NA	Intergenic	LTR13|LTR|ERVK	-33122	NM_001018054	7804	Hs.280387	NM_004631		LRP8	APOER2|HSZ75190|LRP-8|MCI1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding
19-PTNLD28-TUMOR_peak_27414	chr13	22141986	22142108	+	6.69625	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	36308	NM_152726	221154	Hs.412103	NM_152726	HPRD:16852	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
19-PTNLD28-TUMOR_peak_43925	chr17	78992017	78992150	+	6.69625	NA	Intergenic	L1MEg1|LINE|L1	16436	NR_026857	440465	Hs.448889	NM_001004336	HPRD:13544	BAIAP2-AS1	-	BAIAP2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_23312	chr12	19291512	19291678	+	6.69625	NA	intron (NM_001256470, intron 3 of 31)	intron (NM_001256470, intron 3 of 31)	8969	NM_001190860	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_102326	chr9	17075742	17075909	+	6.69625	NA	Intergenic	MLT2B1|LTR|ERVL	-59164	NM_001286985	54875	Hs.435381	NM_017738	HPRD:10800	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein, centrosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_28267	chr13	51723223	51723331	+	6.69625	NA	intron (NR_102431, intron 1 of 4)	intron (NR_102431, intron 1 of 4)	23081	NR_102432	647166	Hs.195052	NR_102431		LINC00371	LINC00372	long intergenic non-protein coding RNA 371	ncRNA
19-PTNLD28-TUMOR_peak_28182	chr13	48478162	48478250	+	6.69625	NA	Intergenic	Intergenic	97256	NM_003850	8803	Hs.743361	NM_003850	HPRD:06798	SUCLA2	A-BETA|MTDPS5|SCS-betaA	succinate-CoA ligase, ADP-forming, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_81388	chr5	102750412	102750644	+	6.69625	NA	Intergenic	Intergenic	127158	NR_104670	102467212	Hs.641885	NR_104670		LOC102467212	-	uncharacterized LOC102467212	ncRNA
19-PTNLD28-TUMOR_peak_23242	chr12	15334738	15334942	+	6.69625	NA	intron (NM_032918, intron 2 of 4)	intron (NM_032918, intron 2 of 4)	29983	NR_046559	100873980	Hs.569154	NR_046559		RERG-AS1	-	RERG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_91392	chr7	17182994	17183150	+	6.69625	NA	Intergenic	LTR88b|LTR|Gypsy?	-155204	NM_001621	196	Hs.171189	NM_001621	HPRD:02596	AHR	bHLHe76	aryl hydrocarbon receptor	protein-coding
19-PTNLD28-TUMOR_peak_27754	chr13	32835796	32835948	+	6.69625	NA	exon (NM_023037, exon 52 of 61)	exon (NM_023037, exon 52 of 61)	50219	NM_001136571	646799	Hs.569254	NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1-like	protein-coding
19-PTNLD28-TUMOR_peak_107917	chrX	36488697	36488797	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-30372	NR_110412	101928627	Hs.590831	NR_110412	ENSG00000226484	LOC101928627	-	uncharacterized LOC101928627	ncRNA
19-PTNLD28-TUMOR_peak_23254	chr12	15716769	15716866	+	6.69625	NA	intron (NM_030671, intron 5 of 13)	intron (NM_030671, intron 5 of 13)	17539	NM_030668	5800	Hs.160871	NM_002848	HPRD:02784	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
19-PTNLD28-TUMOR_peak_27916	chr13	40476877	40476965	+	6.69625	NA	Intergenic	AluSz|SINE|Alu	-238649	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_109013	chrX	102659597	102659843	+	6.69625	NA	Intergenic	Intergenic	27611	NM_014380	27018	Hs.448588	NM_014380	HPRD:02291	NGFRAP1	BEX3|Bex|DXS6984E|HGR74|NADE	nerve growth factor receptor (TNFRSF16) associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64983	chr22	29489632	29489877	+	6.69625	NA	intron (NM_001039570, intron 1 of 8)	intron (NM_001039570, intron 1 of 8)	20688	NM_001039570	83999	Hs.229335	NM_032045	HPRD:11182	KREMEN1	KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58667	chr2	227080786	227080875	+	6.69625	NA	Intergenic	Intergenic	73320	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
19-PTNLD28-TUMOR_peak_36820	chr16	23135739	23135925	+	6.69625	NA	intron (NM_020718, intron 1 of 15)	intron (NM_020718, intron 1 of 15)	24759	NM_020718	57478	Hs.183817	NM_020718	HPRD:15634	USP31	-	ubiquitin specific peptidase 31	protein-coding
19-PTNLD28-TUMOR_peak_10842	chr1	231726459	231726547	+	6.69625	NA	TTS (NR_034037)	TTS (NR_034037)	21333	NR_034037	100287814	Hs.25555	NR_034037	ENSG00000229228	LINC00582	-	long intergenic non-protein coding RNA 582	ncRNA
19-PTNLD28-TUMOR_peak_13527	chr10	50105275	50105382	+	6.69625	NA	intron (NM_020945, intron 44 of 61)	intron (NM_020945, intron 44 of 61)	16952	NM_001006939	474354	Hs.202438	NM_001006939	HPRD:17450	LRRC18	UNQ933|UNQ9338|VKGE9338	leucine rich repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_35217	chr15	91006702	91006868	+	6.69625	NA	intron (NM_003870, intron 15 of 37)	intron (NM_003870, intron 15 of 37)	-66333	NM_001042574	64784	Hs.567572	NM_022769	HPRD:13384	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_105679	chr9	118701506	118701674	+	6.69625	NA	Intergenic	L2|LINE|L2	-14213	NR_024032	58483	Hs.23367	NM_021208		LINC00474	C9orf27|EST-YD1	long intergenic non-protein coding RNA 474	ncRNA
19-PTNLD28-TUMOR_peak_76311	chr4	95771143	95771334	+	6.69625	NA	intron (NM_001203, intron 1 of 12)	LTR85c|LTR|Gypsy?	92110	NM_001203	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_23177	chr12	13471303	13471391	+	6.69625	NA	Intergenic	LTR33A|LTR|ERVL	58332	NR_036555	283422	Hs.448717	NM_182558	HPRD:08166	C12orf36	-	chromosome 12 open reading frame 36	ncRNA
19-PTNLD28-TUMOR_peak_54598	chr2	102782972	102783134	+	6.69625	NA	intron (NM_001288706, intron 6 of 11)	intron (NM_001288706, intron 6 of 11)	-20380	NM_003854	8808	Hs.659863	NM_003854	HPRD:05150	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_15827	chr10	118015445	118015668	+	6.69625	NA	intron (NM_005264, intron 4 of 10)	intron (NM_005264, intron 4 of 10)	16263	NM_145793	2674	Hs.388347	NM_005264	HPRD:03291	GFRA1	GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1	GDNF family receptor alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_57698	chr2	199965209	199965525	+	6.69625	NA	Intergenic	Intergenic	357452	NM_001172509	23314	Hs.516617	NM_015265	HPRD:12178	SATB2	GLSS	SATB homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_77882	chr4	161444449	161444552	+	6.69625	NA	Intergenic	Intergenic	1255502	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_99589	chr8	96671274	96671485	+	6.69625	NA	intron (NR_038205, intron 2 of 2)	intron (NR_038205, intron 2 of 2)	289197	NR_036611	100500773	Hs.741582	NR_036611		LOC100500773	-	serine/arginine-rich splicing factor 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103076	chr9	38727529	38727661	+	6.69625	NA	Intergenic	Intergenic	106510	NR_027294	158228	Hs.632652	NR_027294		FAM201A	C9orf122	family with sequence similarity 201, member A	ncRNA
19-PTNLD28-TUMOR_peak_73945	chr4	2980240	2980328	+	6.69625	NA	intron (NM_005307, intron 1 of 13)	MER65D|LTR|ERV1	14941	NM_001004056	2868	Hs.32959	NM_005307	HPRD:00656	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_30848	chr14	65945473	65945577	+	6.69625	NA	intron (NM_004480, intron 2 of 9)	MER57E1|LTR|ERV1	66077	NR_038170	2530	Hs.597649	NM_004480	HPRD:03994	FUT8	-	fucosyltransferase 8 (alpha (1,6) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_34513	chr15	75092524	75092731	+	6.69625	NA	intron (NM_004383, intron 5 of 12)	intron (NM_004383, intron 5 of 12)	-11529	NR_039738	100616183		NR_039738	miRBase:MI0016879	MIR4513	-	microRNA 4513	ncRNA
19-PTNLD28-TUMOR_peak_107650	chrX	16141465	16141567	+	6.69625	NA	promoter-TSS (NM_005314)	promoter-TSS (NM_005314)	92	NM_005314	2925	Hs.567282	NM_005314		GRPR	BB2	gastrin-releasing peptide receptor	protein-coding
19-PTNLD28-TUMOR_peak_46973	chr19	7566018	7566144	+	6.69625	NA	exon (NM_198534, exon 2 of 9)	exon (NM_198534, exon 2 of 9)	3636	NM_198534	374877	Hs.631862	NM_198534	HPRD:13420	C19orf45	-	chromosome 19 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_53918	chr2	87157974	87158062	+	6.69625	NA	intron (NM_001024457, intron 1 of 22)	intron (NM_001024457, intron 1 of 22)	13280	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_29650	chr14	25769326	25769456	+	6.69625	NA	Intergenic	L2c|LINE|L2	-250296	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_74826	chr4	25905615	25905732	+	6.69625	NA	Intergenic	MLT2B3|LTR|ERVL	-10141	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_67229	chr3	25645799	25645912	+	6.69625	NA	intron (NM_001068, intron 33 of 35)	intron (NM_001068, intron 33 of 35)	60008	NM_001068	7155	Hs.475733	NM_001068	HPRD:00537	TOP2B	TOPIIB|top2beta	topoisomerase (DNA) II beta 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_68888	chr3	68719623	68719766	+	6.69625	NA	Intergenic	Intergenic	262067	NM_001005527	151647	Hs.187873	NM_182522	HPRD:08343	FAM19A4	TAFA-4|TAFA4	family with sequence similarity 19 (chemokine (C-C motif)-like), member A4	protein-coding
19-PTNLD28-TUMOR_peak_108404	chrX	54150943	54151037	+	6.69625	NA	intron (NM_001300788, intron 9 of 13)	L1HS|LINE|L1	58701	NM_017848	54954	Hs.86045	NM_017848	HPRD:06480	FAM120C	CXorf17|ORF34	family with sequence similarity 120C	protein-coding
19-PTNLD28-TUMOR_peak_20677	chr11	95063647	95063735	+	6.69625	NA	Intergenic	Intergenic	-97986	NM_001271594	143686	Hs.120633	NM_144665	HPRD:09682	SESN3	SEST3	sestrin 3	protein-coding
19-PTNLD28-TUMOR_peak_82409	chr5	137066148	137066291	+	6.69625	NA	intron (NM_017415, intron 1 of 14)	intron (NM_017415, intron 1 of 14)	5560	NM_017415	26249	Hs.655084	NM_017415	HPRD:09011	KLHL3	PHA2D	kelch-like family member 3	protein-coding
19-PTNLD28-TUMOR_peak_52913	chr2	58552934	58553081	+	6.69625	NA	Intergenic	L1PA4|LINE|L1	-84492	NM_018062	55120	Hs.631890	NM_018062	HPRD:06997	FANCL	FAAP43|PHF9|POG	Fanconi anemia, complementation group L	protein-coding
19-PTNLD28-TUMOR_peak_24234	chr12	51577734	51577921	+	6.69625	NA	Intergenic	Intergenic	-10901	NM_001173453	7024	Hs.48849	NM_005653	HPRD:01790	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
19-PTNLD28-TUMOR_peak_101933	chr9	1083733	1083967	+	6.69625	NA	Intergenic	Intergenic	33230	NM_181872	10655	Hs.59506	NM_006557	HPRD:16079	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_100024	chr8	107620933	107621033	+	6.69625	NA	intron (NM_018002, intron 3 of 15)	intron (NM_018002, intron 3 of 15)	-49053	NM_181354	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_64252	chr22	18421276	18421364	+	6.69625	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-31668	NM_001136004	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_27475	chr13	24495805	24495896	+	6.69625	NA	intron (NR_073430, intron 3 of 4)	intron (NR_073430, intron 3 of 4)	-24209	NR_104426	387911	Hs.740810	NM_001007537	HPRD:17369	C1QTNF9B	CTRP9B	C1q and tumor necrosis factor related protein 9B	protein-coding
19-PTNLD28-TUMOR_peak_100491	chr8	123894418	123894553	+	6.69625	NA	intron (NM_014943, intron 2 of 3)	intron (NM_014943, intron 2 of 3)	100584	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_58059	chr2	208049210	208049298	+	6.69625	NA	Intergenic	Intergenic	-17284	NM_001270943	8609	Hs.59908	NM_003709	HPRD:07279	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_24258	chr12	52014373	52014462	+	6.69625	NA	intron (NM_014191, intron 1 of 26)	MARNA|DNA|TcMar-Mariner	29397	NM_014191	6334	Hs.436550	NM_014191	HPRD:09006	SCN8A	CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium channel, voltage gated, type VIII, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_14468	chr10	79497532	79497631	+	6.69625	NA	Intergenic	Intergenic	-100004	NM_001271522	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_67310	chr3	29153462	29153550	+	6.69625	NA	Intergenic	L1HS|LINE|L1	168924	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_27524	chr13	25569496	25569584	+	6.69625	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-26933	NR_026730	646405	Hs.620592	NM_001126062		TPTE2P1	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_107562	chrX	12822907	12822995	+	6.69625	NA	intron (NM_001039091, intron 2 of 6)	intron (NM_001039091, intron 2 of 6)	13477	NM_001039091	5634	Hs.654581	NM_002765	HPRD:02414	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
19-PTNLD28-TUMOR_peak_30127	chr14	48656673	48656803	+	6.69625	NA	Intergenic	L1HS|LINE|L1	-392521	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_26251	chr12	110510886	110511089	+	6.69625	NA	Intergenic	Intergenic	-5487	NM_207435	400073	Hs.44817	NM_207435	HPRD:13443	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
19-PTNLD28-TUMOR_peak_21756	chr11	122693312	122693477	+	6.69625	NA	Intergenic	LTR39-int|LTR|ERV1	-15861	NM_019604	56253	Hs.159523	NM_019604	HPRD:16760	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
19-PTNLD28-TUMOR_peak_5718	chr1	115722103	115722377	+	6.69625	NA	Intergenic	Intergenic	-90119	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_35432	chr15	99440233	99440477	+	6.69625	NA	intron (NM_001291858, intron 4 of 20)	intron (NM_001291858, intron 4 of 20)	108530	NM_001102612	145814	Hs.592021	NM_001102612	ENSG00000183571	PGPEP1L	-	pyroglutamyl-peptidase I-like	protein-coding
19-PTNLD28-TUMOR_peak_56385	chr2	153806776	153806867	+	6.69625	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	232414	NR_024526	151188	Hs.643580	NM_152522	HPRD:12485	ARL6IP6	AIP-6|PFAAP1	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
19-PTNLD28-TUMOR_peak_79278	chr5	28200414	28200502	+	6.69625	NA	Intergenic	L1HS|LINE|L1	-726519	NR_033961	729862	Hs.646006	NR_033961		LSP1P3	-	lymphocyte-specific protein 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_14459	chr10	79297566	79297727	+	6.69625	NA	intron (NM_001271519, intron 1 of 28)	intron (NM_001271519, intron 1 of 28)	99931	NM_001271520	3778	Hs.144795	NM_002247	HPRD:15967	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
19-PTNLD28-TUMOR_peak_85805	chr6	19812857	19812978	+	6.69625	NA	Intergenic	Intergenic	-24684	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_63110	chr21	32148086	32148225	+	6.69625	NA	Intergenic	Intergenic	-20459	NM_181619	337977	Hs.567837	NM_181619		KRTAP21-1	KAP21.1	keratin associated protein 21-1	protein-coding
19-PTNLD28-TUMOR_peak_28176	chr13	47790499	47790633	+	6.69625	NA	Intergenic	Intergenic	-319355	NM_000621	3356	Hs.72630	NM_000621	HPRD:01638	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_88102	chr6	56144180	56144330	+	6.69625	NA	intron (NR_046940, intron 4 of 5)	intron (NR_046940, intron 4 of 5)	-31877	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_99388	chr8	86209771	86209859	+	6.69625	NA	Intergenic	Intergenic	44128	NM_001164830	759	Hs.23118	NM_001738	HPRD:00265	CA1	CA-I|CAB|Car1|HEL-S-11	carbonic anhydrase I	protein-coding
19-PTNLD28-TUMOR_peak_105672	chr9	118456462	118456577	+	6.69625	NA	Intergenic	Intergenic	49999	NR_109805	101928775	Hs.522362	NR_109805		LOC101928775	-	uncharacterized LOC101928775	ncRNA
19-PTNLD28-TUMOR_peak_87251	chr6	38180356	38180607	+	6.69625	NA	intron (NM_001099272, intron 9 of 10)	intron (NM_001099272, intron 9 of 10)	383362	NM_001172418	114781	Hs.603858	NM_052893	HPRD:12543	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_14782	chr10	89521744	89521848	+	6.69625	NA	intron (NM_032810, intron 8 of 9)	AluJr4|SINE|Alu	56121	NM_032810	84896	Hs.435948	NM_032810	HPRD:12499	ATAD1	AFDC1|THORASE	ATPase family, AAA domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74596	chr4	15151579	15151701	+	6.69625	NA	Intergenic	Intergenic	147342	NM_001177381	132864	Hs.656937	NM_182485	HPRD:16744	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_109231	chrX	114837463	114837628	+	6.69625	NA	intron (NM_001136025, intron 1 of 15)	intron (NM_001136025, intron 1 of 15)	9726	NM_001282338	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_59446	chr20	1581290	1581383	+	6.69625	NA	intron (NM_001135844, intron 4 of 5)	LTR16A|LTR|ERVL	19353	NM_006065	10326	Hs.664861	NM_006065	HPRD:04866	SIRPB1	CD172b|SIRP-BETA-1	signal-regulatory protein beta 1	protein-coding
19-PTNLD28-TUMOR_peak_15902	chr10	120303692	120303810	+	6.69625	NA	Intergenic	Intergenic	51409	NM_004248	2834	Hs.248119	NM_004248	HPRD:02937	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_42757	chr17	60319618	60319721	+	6.69625	NA	Intergenic	Intergenic	33347	NR_027486	440452	Hs.448884	NR_027486	ENSG00000188755	TBC1D3P2	-	TBC1 domain family, member 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_56642	chr2	161740674	161740794	+	6.69625	NA	Intergenic	Intergenic	-252732	NM_133484	10010	Hs.132257	NM_004180	HPRD:04870	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member-associated NFKB activator	protein-coding
19-PTNLD28-TUMOR_peak_57741	chr2	201263886	201264021	+	6.69625	NA	intron (NM_001282735, intron 3 of 12)	L1MB1|LINE|L1	90280	NM_001282744	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_55578	chr2	128507156	128507353	+	6.69625	NA	intron (NM_001006623, intron 7 of 7)	AluSx1|SINE|Alu	48657	NM_032740	84826	Hs.345849	NM_032740	HPRD:14683	SFT2D3	-	SFT2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_89725	chr6	140957931	140958151	+	6.69625	NA	Intergenic	Intergenic	-46910	NR_039675	100616180		NR_039675	miRBase:MI0016816	MIR4465	-	microRNA 4465	ncRNA
19-PTNLD28-TUMOR_peak_107669	chrX	16900908	16901183	+	6.69625	NA	Intergenic	Intergenic	-12511	NM_002893	5931	Hs.495755	NM_002893	HPRD:04231	RBBP7	RbAp46	retinoblastoma binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_105246	chr9	111162754	111162939	+	6.69625	NA	Intergenic	Intergenic	455429	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_29998	chr14	39455060	39455169	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-69028	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
19-PTNLD28-TUMOR_peak_90173	chr6	155709831	155709923	+	6.69625	NA	Intergenic	Intergenic	67160	NM_015718	50508	Hs.247776	NM_015718	HPRD:06165	NOX3	GP91-3|MOX-2	NADPH oxidase 3	protein-coding
19-PTNLD28-TUMOR_peak_92329	chr7	44961826	44961931	+	6.69625	NA	Intergenic	Intergenic	-36894	NM_033224	5814	Hs.349150	NM_033224	HPRD:12325	PURB	PURBETA	purine-rich element binding protein B	protein-coding
19-PTNLD28-TUMOR_peak_61055	chr20	38740036	38740142	+	6.69625	NA	Intergenic	Intergenic	106986	NR_109937	100505663	Hs.559348	NR_109936	ENSG00000237767	LINC01370	-	long intergenic non-protein coding RNA 1370	ncRNA
19-PTNLD28-TUMOR_peak_53876	chr2	86341670	86341819	+	6.69625	NA	intron (NM_017952, intron 4 of 23)	L2a|LINE|L2	8439	NM_017952	55037	Hs.323489	NM_017952	HPRD:08631	PTCD3	MRP-S39	pentatricopeptide repeat domain 3	protein-coding
19-PTNLD28-TUMOR_peak_81405	chr5	103415885	103416017	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-517449	NM_031438	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_43069	chr17	65571549	65571768	+	6.69625	NA	intron (NM_181671, intron 4 of 9)	intron (NM_181671, intron 4 of 9)	-142403	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_108159	chrX	47059812	47060090	+	6.69625	NA	intron (NM_003334, intron 5 of 25)	L2c|LINE|L2	-4296	NR_024616	8552	Hs.657350	NM_003669		INE1	NCRNA00010	inactivation escape 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16093	chr10	125567031	125567154	+	6.69625	NA	intron (NM_198148, intron 4 of 13)	L2c|LINE|L2	84408	NM_198148	119587	Hs.656887	NM_198148	HPRD:08517	CPXM2	CPX2|UNQ676	carboxypeptidase X (M14 family), member 2	protein-coding
19-PTNLD28-TUMOR_peak_33928	chr15	63654509	63654738	+	6.69625	NA	intron (NM_206925, intron 2 of 9)	MIR|SINE|MIR	19686	NM_001218	771	Hs.210995	NM_001218		CA12	CAXII|HsT18816	carbonic anhydrase XII	protein-coding
19-PTNLD28-TUMOR_peak_81959	chr5	126687212	126687300	+	6.69625	NA	intron (NM_001256545, intron 4 of 24)	intron (NM_001256545, intron 4 of 24)	60800	NM_032446	84466	Hs.438709	NM_032446	HPRD:14384	MEGF10	EMARDD	multiple EGF-like-domains 10	protein-coding
19-PTNLD28-TUMOR_peak_31496	chr14	80069273	80069380	+	6.69625	NA	intron (NM_001272020, intron 2 of 5)	intron (NM_001272020, intron 2 of 5)	323644	NR_073546	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_15700	chr10	114780710	114780868	+	6.69625	NA	intron (NM_001146274, intron 4 of 13)	MIRb|SINE|MIR	70780	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_8913	chr1	186612854	186612972	+	6.69625	NA	Intergenic	L2c|LINE|L2	36646	NM_000963	5743	Hs.196384	NM_000963	HPRD:02599	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
19-PTNLD28-TUMOR_peak_67645	chr3	40284694	40284929	+	6.69625	NA	intron (NM_001284426, intron 10 of 14)	intron (NM_001284426, intron 10 of 14)	-66362	NM_005875	10289	Hs.315230	NM_005875	HPRD:17032	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
19-PTNLD28-TUMOR_peak_88650	chr6	88038399	88038487	+	6.69625	NA	intron (NM_198568, intron 1 of 2)	L1PA3|LINE|L1	553	NM_198568	375519	Hs.146727	NM_198568	HPRD:13579	GJB7	CX25|bA136M9.1|connexin25	gap junction protein, beta 7, 25kDa	protein-coding
19-PTNLD28-TUMOR_peak_52490	chr2	44935833	44935946	+	6.69625	NA	intron (NM_024766, intron 6 of 10)	intron (NM_024766, intron 6 of 10)	-159230	NR_039629	100616475		NR_039629	miRBase:MI0016770	MIR548AD	-	microRNA 548ad	ncRNA
19-PTNLD28-TUMOR_peak_69363	chr3	97742222	97742317	+	6.69625	NA	intron (NM_001105580, intron 3 of 9)	intron (NM_001105580, intron 3 of 9)	11879	NM_001105580	200959	Hs.534578	NM_001105580	ENSG00000183185	GABRR3	-	gamma-aminobutyric acid (GABA) A receptor, rho 3	protein-coding
19-PTNLD28-TUMOR_peak_25617	chr12	94337713	94337811	+	6.69625	NA	Intergenic	LTR33|LTR|ERVL	-204737	NM_005761	10154	Hs.584845	NM_005761	HPRD:05036	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
19-PTNLD28-TUMOR_peak_52904	chr2	58133423	58133511	+	6.69625	NA	Intergenic	Intergenic	-1319	NM_001288837	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_80083	chr5	58316560	58316657	+	6.69625	NA	intron (NM_001104631, intron 6 of 14)	intron (NM_001104631, intron 6 of 14)	18731	NM_001197221	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_105180	chr9	109934596	109934686	+	6.69625	NA	Intergenic	Intergenic	-85925	NR_031752	100313841		NR_031752	miRBase:MI0010637	MIR548Q	-	microRNA 548q	ncRNA
19-PTNLD28-TUMOR_peak_103658	chr9	71179454	71179641	+	6.69625	NA	Intergenic	Intergenic	-18029	NR_109769	101927015	Hs.406454	NR_109769	ENSG00000234506	LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
19-PTNLD28-TUMOR_peak_89076	chr6	110651233	110651321	+	6.69625	NA	intron (NM_001123364, intron 1 of 4)	L1MD2|LINE|L1	28198	NM_001123364	728464	Hs.722171	NM_001123364	ENSG00000053328	METTL24	C6orf186|dJ71D21.2	methyltransferase like 24	protein-coding
19-PTNLD28-TUMOR_peak_15157	chr10	99805608	99805781	+	6.69625	NA	Intergenic	Intergenic	-15109	NM_018058	55118	Hs.500736	NM_018058	HPRD:10447	CRTAC1	ASPIC|ASPIC1|CEP-68	cartilage acidic protein 1	protein-coding
19-PTNLD28-TUMOR_peak_5097	chr1	97603962	97604053	+	6.69625	NA	intron (NM_000110, intron 20 of 22)	intron (NM_000110, intron 20 of 22)	42528	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37879	chr16	53986234	53986604	+	6.69625	NA	intron (NM_001080432, intron 8 of 8)	intron (NM_001080432, intron 8 of 8)	-86886	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_15928	chr10	120891342	120891430	+	6.69625	NA	intron (NR_027141, intron 7 of 8)	intron (NR_027141, intron 7 of 8)	27757	NR_027141	55855	Hs.567120	NM_018472		FAM45B	HT011	family with sequence similarity 45, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_107914	chrX	36193888	36194016	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-52944	NM_001098843	645090	Hs.632791	NM_001098843	ENSG00000205081	CXorf30	-	chromosome X open reading frame 30	protein-coding
19-PTNLD28-TUMOR_peak_52812	chr2	54736327	54736496	+	6.69625	NA	intron (NM_003128, intron 1 of 35)	HERVH-int|LTR|ERV1	-19948	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
19-PTNLD28-TUMOR_peak_63302	chr21	35788080	35788182	+	6.69625	NA	Intergenic	MER41B|LTR|ERV1	-14761	NM_001282537	101928147	Hs.303798	NM_001282537		C21orf140	-	chromosome 21 open reading frame 140	protein-coding
19-PTNLD28-TUMOR_peak_83332	chr5	152647200	152647306	+	6.69625	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-222831	NM_001258020	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_67948	chr3	46909134	46909238	+	6.69625	NA	Intergenic	Intergenic	-4213	NM_000258	4634	Hs.517939	NM_000258	HPRD:01183	MYL3	CMH8|MLC1SB|MLC1V|VLC1	myosin, light chain 3, alkali; ventricular, skeletal, slow	protein-coding
19-PTNLD28-TUMOR_peak_75631	chr4	72978396	72978484	+	6.69625	NA	intron (NM_001144756, intron 2 of 4)	intron (NM_001144756, intron 2 of 4)	73591	NM_001144756	10886	Hs.99231	NM_004885	HPRD:16244	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_103743	chr9	72807752	72807885	+	6.69625	NA	intron (NM_153267, intron 11 of 13)	MER31A|LTR|ERV1	-17014	NR_040076	100507244	Hs.556816	NR_040076	ENSG00000204706	MAMDC2-AS1	-	MAMDC2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20636	chr11	94411541	94411646	+	6.69625	NA	Intergenic	Intergenic	-89915	NM_001301007	154810	Hs.503594	NM_130847	HPRD:12451	AMOTL1	JEAP	angiomotin like 1	protein-coding
19-PTNLD28-TUMOR_peak_74677	chr4	18413266	18413514	+	6.69625	NA	Intergenic	Intergenic	-389907	NM_153686	254251	Hs.446201	NM_153686	HPRD:10088	LCORL	MLR1	ligand dependent nuclear receptor corepressor-like	protein-coding
19-PTNLD28-TUMOR_peak_22411	chr12	1213710	1213801	+	6.69625	NA	intron (NM_001301248, intron 2 of 18)	intron (NM_001301248, intron 2 of 18)	76841	NM_001301248	23085	Hs.601216	NM_178039	HPRD:06181	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
19-PTNLD28-TUMOR_peak_77870	chr4	160311914	160312040	+	6.69625	NA	Intergenic	LTR12C|LTR|ERV1	122979	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
19-PTNLD28-TUMOR_peak_62417	chr20	58100673	58100815	+	6.69625	NA	Intergenic	Intergenic	-51820	NM_001199505	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_25857	chr12	102942493	102942655	+	6.69625	NA	Intergenic	L2|LINE|L2	-68196	NM_001111283	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_28673	chr13	93405198	93405316	+	6.69625	NA	intron (NM_004466, intron 7 of 7)	L1PA3|LINE|L1	-31390	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75665	chr4	74710208	74710315	+	6.69625	NA	Intergenic	Intergenic	7988	NM_002993	6372	Hs.164021	NM_002993	HPRD:00735	CXCL6	CKA-3|GCP-2|GCP2|SCYB6	chemokine (C-X-C motif) ligand 6	protein-coding
19-PTNLD28-TUMOR_peak_12669	chr10	29935542	29935649	+	6.69625	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-11694	NM_021738	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_39597	chr17	1018407	1018679	+	6.69625	NA	intron (NM_021962, intron 2 of 22)	intron (NM_021962, intron 2 of 22)	-6203	NM_001092	29	Hs.159306	NM_001092	HPRD:02649	ABR	MDB	active BCR-related	protein-coding
19-PTNLD28-TUMOR_peak_62239	chr20	55780836	55780949	+	6.69625	NA	intron (NM_001719, intron 2 of 6)	intron (NM_001719, intron 2 of 6)	-7860	NR_110631	102723590	Hs.667674	NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57065	chr2	175422699	175422787	+	6.69625	NA	promoter-TSS (NR_125730).8	promoter-TSS (NR_125730).8	57	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_48994	chr19	39786801	39786889	+	6.69625	NA	promoter-TSS (NM_172140)	promoter-TSS (NM_172140)	-120	NM_172140	282618	Hs.406745	NM_172140	HPRD:09588	IFNL1	IL-29|IL29	interferon, lambda 1	protein-coding
19-PTNLD28-TUMOR_peak_1553	chr1	24717922	24718028	+	6.69625	NA	intron (NM_178122, intron 2 of 7)	intron (NM_178122, intron 2 of 7)	22287	NM_001199013	90529	Hs.403187	NM_178122	HPRD:14273	STPG1	C1orf201|MAPO2	sperm-tail PG-rich repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80100	chr5	58663802	58663898	+	6.69625	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-11123	NM_001197219	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_49247	chr19	43218977	43219065	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	25647	NM_021016	5671	Hs.654413	NM_021016	HPRD:08892	PSG3	-	pregnancy specific beta-1-glycoprotein 3	protein-coding
19-PTNLD28-TUMOR_peak_71880	chr3	155929418	155929522	+	6.69625	NA	intron (NM_003471, intron 1 of 13)	intron (NM_003471, intron 1 of 13)	16202	NR_046617	100874083	Hs.603823	NR_046617	ENSG00000240596	KCNAB1-AS2	-	KCNAB1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_97941	chr8	28913662	28913838	+	6.69625	NA	Intergenic	Intergenic	165525	NM_024567	79618	Hs.563560	NM_024567	HPRD:07964	HMBOX1	HNF1LA|HOT1|PBHNF	homeobox containing 1	protein-coding
19-PTNLD28-TUMOR_peak_87889	chr6	49377824	49377959	+	6.69625	NA	Intergenic	Intergenic	53150	NM_000255	4594	Hs.485527	NM_000255	HPRD:02014	MUT	MCM	methylmalonyl CoA mutase	protein-coding
19-PTNLD28-TUMOR_peak_108927	chrX	95318632	95318738	+	6.69625	NA	Intergenic	L1HS|LINE|L1	274216	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_79253	chr5	25036963	25037185	+	6.69625	NA	Intergenic	AluY|SINE|Alu	-196382	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	ncRNA
19-PTNLD28-TUMOR_peak_108345	chrX	51486627	51486764	+	6.69625	NA	5' UTR (NM_018094, exon 1 of 1)	5' UTR (NM_018094, exon 1 of 1)	214	NM_018094	23708	Hs.59523	NM_018094	HPRD:02334	GSPT2	ERF3B|GST2	G1 to S phase transition 2	protein-coding
19-PTNLD28-TUMOR_peak_10509	chr1	226699961	226700049	+	6.69625	NA	Intergenic	Intergenic	-36496	NM_001003665	375057	Hs.116827	NM_001003665	HPRD:16821	C1orf95	-	chromosome 1 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_88421	chr6	77586510	77586624	+	6.69625	NA	Intergenic	L1HS|LINE|L1	586553	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_66059	chr22	48599922	48600010	+	6.69625	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	-70210	NR_036172	100422916		NR_036172	miRBase:MI0014250	MIR3201	-	microRNA 3201	ncRNA
19-PTNLD28-TUMOR_peak_87735	chr6	45431823	45431980	+	6.69625	NA	intron (NM_001024630, intron 5 of 8)	AluY|SINE|Alu	41587	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_45427	chr18	42417605	42417693	+	6.69625	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	132482	NR_036203	100422829		NR_036203	miRBase:MI0015848	MIR4319	-	microRNA 4319	ncRNA
19-PTNLD28-TUMOR_peak_76618	chr4	111797861	111797949	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-234626	NM_001204399	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_101322	chr8	139424489	139424651	+	6.69625	NA	intron (NM_015912, intron 1 of 19)	MLT1F2|LTR|ERVL-MaLR	84495	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_89163	chr6	113278016	113278214	+	6.69625	NA	Intergenic	Intergenic	609583	NM_001013734	442247	Hs.448264	NM_001013734	HPRD:18472	RFPL4B	RNF211	ret finger protein-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_71454	chr3	143494358	143494446	+	6.69625	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	72971	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_57385	chr2	187636658	187636940	+	6.69625	NA	Intergenic	L1PBa|LINE|L1	77098	NM_182521	151112	Hs.375054	NM_182521	HPRD:15902	ZSWIM2	MEX|ZZZ2	zinc finger, SWIM-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_45973	chr18	56692260	56692356	+	6.69625	NA	Intergenic	Intergenic	-10663	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96863	chr8	1694398	1694500	+	6.69625	NA	Intergenic	Intergenic	-17421	NM_018941	2055	Hs.127675	NM_018941	HPRD:06383	CLN8	C8orf61|EPMR	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	protein-coding
19-PTNLD28-TUMOR_peak_28432	chr13	71964227	71964319	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	375000	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
19-PTNLD28-TUMOR_peak_88882	chr6	100098796	100098889	+	6.69625	NA	Intergenic	SVA_D|Other|Other	44192	NM_021620	59336	Hs.287386	NM_021620		PRDM13	MU-MB-20.220|PFM10	PR domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_67365	chr3	30868224	30868428	+	6.69625	NA	intron (NM_207359, intron 11 of 14)	CR1_Mam|LINE|CR1	67827	NM_207359	339896	Hs.657052	NM_207359	HPRD:13557	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_23794	chr12	40405094	40405208	+	6.69625	NA	intron (NM_052885, intron 3 of 9)	MER20|DNA|hAT-Charlie	94510	NM_052885	114134	Hs.558595	NM_052885	HPRD:15363	SLC2A13	HMIT	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding
19-PTNLD28-TUMOR_peak_81549	chr5	111702830	111702950	+	6.69625	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	52120	NM_022140	64097	Hs.584954	NM_022140	HPRD:09939	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
19-PTNLD28-TUMOR_peak_35102	chr15	89129962	89130265	+	6.69625	NA	non-coding (NR_120370, exon 3 of 3)	non-coding (NR_120370, exon 3 of 3)	17721	NR_120369	101929743	Hs.558810	NR_120369	ENSG00000249487	LOC101929743	-	uncharacterized LOC101929743	ncRNA
19-PTNLD28-TUMOR_peak_81780	chr5	121528752	121528840	+	6.69625	NA	Intergenic	Intergenic	32925	NM_001195535	100505841	Hs.733368	NM_001195535		LOC100505841	-	zinc finger protein 474-like	protein-coding
19-PTNLD28-TUMOR_peak_13695	chr10	56229911	56230021	+	6.69625	NA	intron (NM_001142768, intron 2 of 32)	L1MA4A|LINE|L1	331085	NM_001142765	65217	Hs.280209	NM_033056	HPRD:05698	PCDH15	CDHR15|DFNB23|USH1F	protocadherin-related 15	protein-coding
19-PTNLD28-TUMOR_peak_107397	chrX	3094542	3094732	+	6.69625	NA	Intergenic	Intergenic	-95224	NR_038428	100129464	Hs.187816	NR_038428	ENSG00000228459	CXorf28	-	chromosome X open reading frame 28	ncRNA
19-PTNLD28-TUMOR_peak_92369	chr7	46044000	46044116	+	6.69625	NA	Intergenic	L2a|LINE|L2	-83187	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_83129	chr5	149076706	149076863	+	6.69625	NA	Intergenic	L1MB5|LINE|L1	-33031	NM_001172698	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_99482	chr8	91803906	91804097	+	6.69625	NA	promoter-TSS (NM_022351)	promoter-TSS (NM_022351)	80	NM_022351	64168	Hs.719466	NM_022351	HPRD:16851	NECAB1	EFCBP1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_80137	chr5	59984229	59984323	+	6.69625	NA	intron (NM_018369, intron 1 of 10)	MIRb|SINE|MIR	11717	NM_001145208	55789	Hs.482233	NM_018369	HPRD:16794	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_26819	chr12	122582479	122582567	+	6.69625	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	65889	NM_014938	22877	Hs.437153	NM_014938		MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_51181	chr2	12228261	12228404	+	6.69625	NA	intron (NR_110196, intron 2 of 5)	L1M5|LINE|L1	81090	NR_110196	100506457	Hs.197824	NR_110196	ENSG00000224184	LOC100506457	-	uncharacterized LOC100506457	ncRNA
19-PTNLD28-TUMOR_peak_25560	chr12	91775298	91775526	+	6.69625	NA	Intergenic	Intergenic	-198606	NM_001920	1634	Hs.156316	NM_001920	HPRD:00501	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
19-PTNLD28-TUMOR_peak_68472	chr3	55386833	55386930	+	6.69625	NA	Intergenic	Intergenic	128545	NM_001256105	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_27901	chr13	40229694	40229872	+	6.69625	NA	promoter-TSS (NM_001145079)	promoter-TSS (NM_001145079)	19	NM_001145079	57511	Hs.507805	NM_020751	HPRD:08445	COG6	CDG2L|COD2|SHNS	component of oligomeric golgi complex 6	protein-coding
19-PTNLD28-TUMOR_peak_2889	chr1	42401987	42402094	+	6.69625	NA	intron (NR_038261, intron 1 of 3)	Charlie17a|DNA|hAT-Charlie	-17544	NR_038260	59269	Hs.403972	NM_024503	HPRD:09442	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_81474	chr5	108253473	108253593	+	6.69625	NA	intron (NM_005246, intron 10 of 19)	intron (NM_005246, intron 10 of 19)	170010	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|Pe1Fe10|Pe1Fe13|Pe1Fe3|Pe1Fe6|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_33019	chr15	34788323	34788411	+	6.69625	NA	Intergenic	Intergenic	32205	NR_036050	100302160		NR_036050		MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
19-PTNLD28-TUMOR_peak_57770	chr2	201639704	201639914	+	6.69625	NA	intron (NR_001557, intron 24 of 30)	(CA)n|Simple_repeat|Simple_repeat	-36460	NM_014670	9689	Hs.355983	NM_014670	HPRD:16570	BZW1	BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_9896	chr1	210001584	210001789	+	6.69625	NA	intron (NM_014388, intron 1 of 11)	intron (NM_014388, intron 1 of 11)	374	NM_014388	27042	Hs.194754	NM_014388	HPRD:14535	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
19-PTNLD28-TUMOR_peak_92528	chr7	50535844	50535942	+	6.69625	NA	intron (NM_001082971, intron 12 of 14)	CpG	-17805	NM_001287495	63979	Hs.137516	NM_022116	HPRD:10958	FIGNL1	-	fidgetin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_74778	chr4	24645079	24645169	+	6.69625	NA	Intergenic	Intergenic	-58940	NM_001358	1665	Hs.696074	NM_001358	HPRD:04553	DHX15	DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p	DEAH (Asp-Glu-Ala-His) box helicase 15	protein-coding
19-PTNLD28-TUMOR_peak_88195	chr6	64722283	64722371	+	6.69625	NA	intron (NM_001292009, intron 33 of 43)	intron (NM_001292009, intron 33 of 43)	365896	NM_015153	23469	Hs.348921	NM_015153	HPRD:08477	PHF3	-	PHD finger protein 3	protein-coding
19-PTNLD28-TUMOR_peak_30608	chr14	60337482	60337598	+	6.69625	NA	promoter-TSS (NM_021136)	promoter-TSS (NM_021136)	17	NM_021136	6252	Hs.368626	NM_021136	HPRD:02921	RTN1	NSP	reticulon 1	protein-coding
19-PTNLD28-TUMOR_peak_81550	chr5	111708414	111708508	+	6.69625	NA	intron (NM_022140, intron 1 of 22)	L2a|LINE|L2	46549	NM_022140	64097	Hs.584954	NM_022140	HPRD:09939	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
19-PTNLD28-TUMOR_peak_99191	chr8	73644204	73644292	+	6.69625	NA	promoter-TSS (NR_110656)	promoter-TSS (NR_110656)	-32	NR_110656	101926908	Hs.680588	NR_110656		LOC101926908	-	uncharacterized LOC101926908	ncRNA
19-PTNLD28-TUMOR_peak_44210	chr18	489615	489724	+	6.69625	NA	intron (NM_130386, intron 1 of 9)	HAL1|LINE|L1	11060	NM_130386	81035	Hs.464422	NM_030781	HPRD:06358	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
19-PTNLD28-TUMOR_peak_54786	chr2	109752394	109752547	+	6.69625	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	5574	NR_036223	100422863		NR_036223	miRBase:MI0015869	MIR4265	-	microRNA 4265	ncRNA
19-PTNLD28-TUMOR_peak_51912	chr2	29806018	29806226	+	6.69625	NA	intron (NM_004304, intron 3 of 28)	intron (NM_004304, intron 3 of 28)	338355	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_28388	chr13	60825602	60825697	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-87530	NM_001258369	81624	Hs.283127	NM_030932	HPRD:10884	DIAPH3	AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2	diaphanous-related formin 3	protein-coding
19-PTNLD28-TUMOR_peak_36084	chr16	6886882	6887060	+	6.69625	NA	intron (NM_001142334, intron 1 of 13)	(TGGA)n|Simple_repeat|Simple_repeat	63161	NM_001142334	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_9914	chr1	210612680	210612811	+	6.69625	NA	intron (NM_018194, intron 7 of 11)	ERVL-B4-int|LTR|ERVL	110105	NM_001170580	55733	Hs.58650	NM_018194	HPRD:12041	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_72314	chr3	170943523	170943836	+	6.69625	NA	intron (NM_001161565, intron 3 of 30)	intron (NM_001161565, intron 3 of 30)	-119131	NR_030295	693154		NR_030295		MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
19-PTNLD28-TUMOR_peak_85462	chr6	13194736	13194873	+	6.69625	NA	intron (NM_030948, intron 7 of 14)	intron (NM_030948, intron 7 of 14)	101014	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_76946	chr4	124640527	124640668	+	6.69625	NA	intron (NR_027105, intron 2 of 4)	L1PB1|LINE|L1	-54822	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_75573	chr4	68751536	68751734	+	6.69625	NA	Intergenic	Intergenic	-1919	NM_004262	9407	Hs.132195	NM_004262	HPRD:05642	TMPRSS11D	HAT	transmembrane protease, serine 11D	protein-coding
19-PTNLD28-TUMOR_peak_2334	chr1	35506191	35506279	+	6.69625	NA	Intergenic	AluSx|SINE|Alu	-8666	NM_007167	9204	Hs.533986	NM_007167	HPRD:10325	ZMYM6	Buster2|MYM|ZBED7|ZNF198L4|ZNF258	zinc finger, MYM-type 6	protein-coding
19-PTNLD28-TUMOR_peak_54808	chr2	110362428	110362518	+	6.69625	NA	intron (NR_047585, intron 1 of 8)	intron (NR_047585, intron 1 of 8)	9310	NM_178584	151011	Hs.469615	NM_144710	HPRD:15325	SEPT10	-	septin 10	protein-coding
19-PTNLD28-TUMOR_peak_65987	chr22	46589834	46589943	+	6.69625	NA	intron (NM_005036, intron 3 of 8)	intron (NM_005036, intron 3 of 8)	43389	NM_001001928	5465	Hs.103110	NM_005036	HPRD:01369	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_80957	chr5	80611372	80611460	+	6.69625	NA	intron (NR_002755, intron 1 of 1)	intron (NR_002755, intron 1 of 1)	14014	NM_001131035	84240	Hs.15536	NM_032280	HPRD:15704	ZCCHC9	PPP1R41	zinc finger, CCHC domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_108772	chrX	74371810	74371922	+	6.69625	NA	intron (NM_001271699, intron 1 of 14)	Plat_L3|LINE|CR1	4309	NM_001271698	22	Hs.370480	NM_004299	HPRD:02137	ABCB7	ABC7|ASAT|Atm1p|EST140535	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding
19-PTNLD28-TUMOR_peak_75516	chr4	62143616	62143737	+	6.69625	NA	Intergenic	Intergenic	-219163	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_29205	chr13	114619309	114619578	+	6.69625	NA	intron (NM_001278674, intron 4 of 7)	intron (NM_001278674, intron 4 of 7)	12521	NR_047495	100861555	Hs.353773	NR_047495	ENSG00000260910	LINC00565	-	long intergenic non-protein coding RNA 565	ncRNA
19-PTNLD28-TUMOR_peak_73019	chr3	187396755	187396877	+	6.69625	NA	Intergenic	Intergenic	-8615	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_103742	chr9	72807326	72807416	+	6.69625	NA	intron (NM_153267, intron 11 of 13)	intron (NM_153267, intron 11 of 13)	-16567	NR_040076	100507244	Hs.556816	NR_040076	ENSG00000204706	MAMDC2-AS1	-	MAMDC2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21848	chr11	124514356	124514758	+	6.69625	NA	intron (NM_001199922, intron 9 of 11)	intron (NM_001199922, intron 9 of 11)	21815	NR_016021	84897	Hs.436410	NM_032811		TBRG1	NIAM|TB-5	transforming growth factor beta regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_42345	chr17	50787935	50788023	+	6.69625	NA	Intergenic	MER52C|LTR|ERV1	-274901	NM_001243552	100506650	Hs.146556	NM_001243552	ENSG00000227011	C17orf112	-	chromosome 17 open reading frame 112	protein-coding
19-PTNLD28-TUMOR_peak_9024	chr1	195868985	195869079	+	6.69625	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	682579	NR_039888	100616363		NR_039888		MIR4735	-	microRNA 4735	ncRNA
19-PTNLD28-TUMOR_peak_105085	chr9	106233646	106233762	+	6.69625	NA	Intergenic	L1PB1|LINE|L1	-146389	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
19-PTNLD28-TUMOR_peak_11973	chr10	10738435	10738617	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	98351	NR_027082	207107	Hs.31562	NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99998	chr8	107011021	107011324	+	6.69625	NA	intron (NR_125797, intron 1 of 4)	intron (NR_125797, intron 1 of 4)	61559	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81349	chr5	100133609	100133777	+	6.69625	NA	Intergenic	Intergenic	105296	NM_005668	7903	Hs.308628	NM_005668	HPRD:03970	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_79248	chr5	24228101	24228321	+	6.69625	NA	Intergenic	LTR3B|LTR|ERVK	416874	NM_006727	1008	Hs.92489	NM_006727	HPRD:05187	CDH10	-	cadherin 10, type 2 (T2-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_56474	chr2	158159186	158159274	+	6.69625	NA	intron (NM_014568, intron 7 of 9)	intron (NM_014568, intron 7 of 9)	23186	NM_020711	57471	Hs.443894	NM_020711	HPRD:13838	ERMN	JN|KIAA1189|ermin	ermin, ERM-like protein	protein-coding
19-PTNLD28-TUMOR_peak_20510	chr11	88831222	88831373	+	6.69625	NA	Intergenic	Intergenic	-34451	NM_000842	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate receptor, metabotropic 5	protein-coding
19-PTNLD28-TUMOR_peak_71672	chr3	149939171	149939271	+	6.69625	NA	Intergenic	Intergenic	-17085	NR_110168	101927992	Hs.534682	NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
19-PTNLD28-TUMOR_peak_72329	chr3	171343108	171343196	+	6.69625	NA	intron (NM_001130081, intron 22 of 25)	L1PA3|LINE|L1	-164955	NM_001161562	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_91288	chr7	12071858	12071991	+	6.69625	NA	Intergenic	LTR37B|LTR|ERV1	-178924	NM_001134232	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_21471	chr11	117955082	117955252	+	6.69625	NA	intron (NM_001290094, intron 1 of 12)	CR1_Mam|LINE|CR1	2341	NR_038318	100526771	Hs.627426	NR_038318	ENSG00000255274	TMPRSS4-AS1	-	TMPRSS4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_56109	chr2	143503516	143503614	+	6.69625	NA	Intergenic	AluJo|SINE|Alu	-131630	NM_003937	8942	Hs.470126	NM_003937	HPRD:08940	KYNU	-	kynureninase	protein-coding
19-PTNLD28-TUMOR_peak_57457	chr2	191296303	191296391	+	6.69625	NA	intron (NM_017694, intron 2 of 7)	SVA_D|Other|Other	23266	NM_017694	54842	Hs.418581	NM_017694	HPRD:13369	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_35316	chr15	93388536	93388647	+	6.69625	NA	Intergenic	Intergenic	-37482	NR_037600	100507217	Hs.622504	NR_037600	ENSG00000272888	LOC100507217	-	uncharacterized LOC100507217	ncRNA
19-PTNLD28-TUMOR_peak_109453	chrX	129707131	129707282	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	78291	NR_027141	55855	Hs.567120	NM_018472		FAM45B	HT011	family with sequence similarity 45, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_20534	chr11	90065678	90065839	+	6.69625	NA	intron (NR_104190, intron 1 of 6)	LTR45B|LTR|ERV1	81358	NR_104190	101929222	Hs.616763	NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_100015	chr8	107420953	107421076	+	6.69625	NA	intron (NM_018002, intron 2 of 15)	LTR22A|LTR|ERVK	-39138	NM_001198532	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_21129	chr11	111547700	111547795	+	6.69625	NA	intron (NM_015191, intron 3 of 14)	intron (NM_015191, intron 3 of 14)	74577	NM_015191	23235	Hs.269128	NM_015191		SIK2	LOH11CR1I|QIK|SNF1LK2	salt-inducible kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_44629	chr18	12159616	12159721	+	6.69625	NA	Intergenic	MER117|DNA|hAT-Charlie	-41110	NR_049896	497259	Hs.451609	NR_049896		C18orf61	-	uncharacterized LOC497259	ncRNA
19-PTNLD28-TUMOR_peak_28987	chr13	107863498	107863586	+	6.69625	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	557314	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_1309	chr1	21379452	21379607	+	6.69625	NA	intron (NM_003760, intron 1 of 31)	SVA_D|Other|Other	58347	NM_003760	8672	Hs.467084	NM_003760	HPRD:06802	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma, 3	protein-coding
19-PTNLD28-TUMOR_peak_107940	chrX	38074409	38074550	+	6.69625	NA	intron (NM_006307, intron 1 of 9)	intron (NM_006307, intron 1 of 9)	5698	NM_001170751	8406	Hs.15154	NM_006307	HPRD:02175	SRPX	DRS|ETX1|HEL-S-83p|SRPX1	sushi-repeat containing protein, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_53260	chr2	68793065	68793218	+	6.69625	NA	intron (NM_173545, intron 8 of 9)	MIR3|SINE|MIR	-79813	NM_138964	10887	Hs.683430	NM_138964	HPRD:08452	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_57953	chr2	205124971	205125061	+	6.69625	NA	Intergenic	Intergenic	-285500	NM_152526	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_79598	chr5	39034915	39035027	+	6.69625	NA	intron (NM_001285439, intron 2 of 38)	L1PA4|LINE|L1	39539	NM_001285440	253260	Hs.407926	NM_152756	HPRD:10682	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR, complex 2	protein-coding
19-PTNLD28-TUMOR_peak_55493	chr2	124104447	124104542	+	6.69625	NA	Intergenic	Intergenic	-678370	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_91232	chr7	7188591	7188689	+	6.69625	NA	Intergenic	Intergenic	-33606	NM_020156	56913	Hs.239666	NM_020156	HPRD:16631	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_31304	chr14	75422124	75422397	+	6.69625	NA	5' UTR (NM_001207012, exon 1 of 6)	5' UTR (NM_001207012, exon 1 of 6)	207	NM_001293643	5228	Hs.252820	NM_002632	HPRD:03076	PGF	D12S1900|PGFL|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
19-PTNLD28-TUMOR_peak_76286	chr4	94598477	94598565	+	6.69625	NA	intron (NM_001510, intron 14 of 15)	L1PA3|LINE|L1	-151557	NM_005172	474	Hs.532680	NM_005172	HPRD:03270	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_88376	chr6	75613941	75614073	+	6.69625	NA	Intergenic	L1PA4|LINE|L1	301616	NM_080645	1303	Hs.101302	NM_004370	HPRD:00377	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_108829	chrX	79590785	79590935	+	6.69625	NA	promoter-TSS (NM_001170574)	promoter-TSS (NM_001170574)	-43	NR_110646	101060146	Hs.546064	NR_110646		CHMP1B2P	-	charged multivesicular body protein 1B2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105178	chr9	109893864	109894045	+	6.69625	NA	Intergenic	Intergenic	-45238	NR_031752	100313841		NR_031752	miRBase:MI0010637	MIR548Q	-	microRNA 548q	ncRNA
19-PTNLD28-TUMOR_peak_60658	chr20	33247097	33247188	+	6.69625	NA	intron (NM_080476, intron 1 of 11)	SVA_D|Other|Other	17947	NM_080476	128869	Hs.253319	NM_080476	HPRD:12250	PIGU	CDC91L1|GAB1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding
19-PTNLD28-TUMOR_peak_13866	chr10	64193027	64193136	+	6.69625	NA	intron (NM_199450, intron 3 of 4)	intron (NM_199450, intron 3 of 4)	-58195	NR_104162	283045		NR_104162		LOC283045	-	uncharacterized LOC283045	ncRNA
19-PTNLD28-TUMOR_peak_677	chr1	10359023	10359126	+	6.69625	NA	promoter-TSS (NR_125730)	promoter-TSS (NR_125730)	50	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_71549	chr3	147534625	147534891	+	6.69625	NA	Intergenic	Intergenic	395644	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_68494	chr3	56337693	56337862	+	6.69625	NA	intron (NM_015576, intron 2 of 16)	intron (NM_015576, intron 2 of 16)	164614	NM_015576	26059	Hs.476389	NM_015576	HPRD:10810	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
19-PTNLD28-TUMOR_peak_3739	chr1	56865042	56865180	+	6.69625	NA	Intergenic	Intergenic	180146	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_98974	chr8	62051621	62051817	+	6.69625	NA	Intergenic	CpG	-148806	NM_173519	157807	Hs.591874	NM_173519	HPRD:14581	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
19-PTNLD28-TUMOR_peak_25448	chr12	80871369	80871486	+	6.69625	NA	intron (NM_001145026, intron 5 of 41)	L1PA3|LINE|L1	33301	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
19-PTNLD28-TUMOR_peak_21206	chr11	112523925	112524023	+	6.69625	NA	Intergenic	Intergenic	-97449	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_76208	chr4	89099571	89099685	+	6.69625	NA	intron (NM_001257386, intron 1 of 15)	L1MA4|LINE|L1	-19617	NM_004827	9429	Hs.480218	NM_004827	HPRD:04783	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding
19-PTNLD28-TUMOR_peak_57443	chr2	190798790	190798890	+	6.69625	NA	Intergenic	Intergenic	128615	NM_005259	2660	Hs.41565	NM_005259	HPRD:03474	MSTN	GDF8|MSLHP	myostatin	protein-coding
19-PTNLD28-TUMOR_peak_98741	chr8	53245938	53246026	+	6.69625	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	76457	NM_014682	9705	Hs.655499	NM_014682	HPRD:18110	ST18	NZF3|ZC2HC10|ZNF387	suppression of tumorigenicity 18, zinc finger	protein-coding
19-PTNLD28-TUMOR_peak_81404	chr5	103415483	103415588	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-517033	NM_031438	83594	Hs.434289	NM_031438	HPRD:10123	NUDT12	-	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
19-PTNLD28-TUMOR_peak_96140	chr7	148036586	148036831	+	6.69625	NA	intron (NR_036093, intron 3 of 3)	CpG	-250949	NM_145304	202865	Hs.352212	NM_145304	HPRD:12921	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_17577	chr11	19482694	19482782	+	6.69625	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	46038	NR_049725	100874012	Hs.434602	NR_049725	ENSG00000255043	NAV2-AS5	-	NAV2 antisense RNA 5	ncRNA
19-PTNLD28-TUMOR_peak_107658	chrX	16661338	16661608	+	6.69625	NA	intron (NM_019857, intron 13 of 18)	intron (NM_019857, intron 13 of 18)	-6808	NM_004057	795	Hs.639	NM_004057	HPRD:02360	S100G	CABP|CABP1|CABP9K|CALB3	S100 calcium binding protein G	protein-coding
19-PTNLD28-TUMOR_peak_71873	chr3	155742777	155742926	+	6.69625	NA	Intergenic	L2c|LINE|L2	-95486	NM_172160	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_17243	chr11	12578634	12578739	+	6.69625	NA	Intergenic	Intergenic	-117283	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_68288	chr3	51936492	51936594	+	6.69625	NA	intron (NM_152397, intron 2 of 3)	LTR10F|LTR|ERV1	843	NM_152397	132141	Hs.671210	NM_152397	HPRD:17155	IQCF1	-	IQ motif containing F1	protein-coding
19-PTNLD28-TUMOR_peak_28481	chr13	75149932	75150093	+	6.69625	NA	Intergenic	Intergenic	23032	NR_034024	338864	Hs.97408	NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
19-PTNLD28-TUMOR_peak_81499	chr5	110201541	110201646	+	6.69625	NA	Intergenic	LTR50|LTR|ERVL	126839	NM_138773	91137	Hs.75639	NM_138773	HPRD:14283	SLC25A46	-	solute carrier family 25, member 46	protein-coding
19-PTNLD28-TUMOR_peak_76357	chr4	99760626	99760751	+	6.69625	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	89555	NM_001130678	1977	Hs.249718	NM_001968		EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F	eukaryotic translation initiation factor 4E	protein-coding
19-PTNLD28-TUMOR_peak_52082	chr2	35541879	35541967	+	6.69625	NA	Intergenic	Intergenic	1040790	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_14718	chr10	88087215	88087303	+	6.69625	NA	intron (NM_017551, intron 2 of 15)	Helitron1Nb_Mam|RC|Helitron	38991	NM_017551	2894	Hs.530653	NM_017551	HPRD:17078	GRID1	GluD1	glutamate receptor, ionotropic, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_69283	chr3	89148233	89148326	+	6.69625	NA	Intergenic	Intergenic	-8395	NM_005233	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_80312	chr5	65794794	65795048	+	6.69625	NA	Intergenic	Intergenic	12511	NR_105001	101928769	Hs.97903	NR_105001	ENSG00000250313	LOC101928769	-	uncharacterized LOC101928769	ncRNA
19-PTNLD28-TUMOR_peak_68475	chr3	55401585	55401684	+	6.69625	NA	Intergenic	MER117|DNA|hAT-Charlie	113792	NM_001256105	7474	Hs.643085	NM_003392	HPRD:01293	WNT5A	hWNT5A	wingless-type MMTV integration site family, member 5A	protein-coding
19-PTNLD28-TUMOR_peak_99799	chr8	102345261	102345380	+	6.69625	NA	Intergenic	Intergenic	-35801	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	-	nascent-polypeptide-associated complex alpha polypeptide pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_30052	chr14	43463380	43463469	+	6.69625	NA	Intergenic	ERVL-E-int|LTR|ERVL	1386660	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_77434	chr4	146329810	146329998	+	6.69625	NA	Intergenic	Intergenic	-73047	NM_005900	4086	Hs.604588	NM_005900	HPRD:03356	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
19-PTNLD28-TUMOR_peak_58970	chr2	235583444	235583532	+	6.69625	NA	Intergenic	Intergenic	-177791	NM_001282431	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_83657	chr5	160913362	160913570	+	6.69625	NA	intron (NM_000813, intron 4 of 9)	intron (NM_000813, intron 4 of 9)	61664	NM_021911	2561	Hs.303527	NM_000813	HPRD:02578	GABRB2	-	gamma-aminobutyric acid (GABA) A receptor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_108868	chrX	84784679	84784767	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-149975	NM_024921	79983	Hs.267038	NM_024921	HPRD:06679	POF1B	POF|POF2B	premature ovarian failure, 1B	protein-coding
19-PTNLD28-TUMOR_peak_89433	chr6	129662252	129662465	+	6.69625	NA	intron (NM_001079823, intron 29 of 63)	intron (NM_001079823, intron 29 of 63)	369012	NM_033515	93663	Hs.486458	NM_033515	HPRD:12474	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
19-PTNLD28-TUMOR_peak_75930	chr4	81287222	81287372	+	6.69625	NA	intron (NM_152770, intron 2 of 5)	intron (NM_152770, intron 2 of 5)	30423	NM_152770	255119	Hs.527104	NM_152770	HPRD:14597	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
19-PTNLD28-TUMOR_peak_69501	chr3	102624770	102624946	+	6.69625	NA	Intergenic	Intergenic	470999	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_101993	chr9	3467741	3467840	+	6.69625	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	21697	NM_001282117	5991	Hs.136829	NM_002919	HPRD:03215	RFX3	-	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
19-PTNLD28-TUMOR_peak_78138	chr4	178936619	178936733	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-107586	NR_108092	101928656	Hs.508131	NR_108092		LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
19-PTNLD28-TUMOR_peak_27782	chr13	34131129	34131246	+	6.69625	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	119785	NM_001243476	90627	Hs.156551	NM_052851	HPRD:11607	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR-related lipid transfer (START) domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_92645	chr7	55347718	55347878	+	6.69625	NA	Intergenic	Intergenic	-24470	NR_110426	102725541	Hs.590524	NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
19-PTNLD28-TUMOR_peak_68236	chr3	50580014	50580104	+	6.69625	NA	Intergenic	Intergenic	25164	NM_016210	51161	Hs.517860	NM_016210	HPRD:16654	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
19-PTNLD28-TUMOR_peak_80962	chr5	80848797	80848932	+	6.69625	NA	intron (NM_001256732, intron 4 of 16)	intron (NM_001256732, intron 4 of 16)	-158876	NM_130767	134526	Hs.591756	NM_130767	HPRD:16680	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
19-PTNLD28-TUMOR_peak_82904	chr5	143059450	143059588	+	6.69625	NA	promoter-TSS (NR_049829)	promoter-TSS (NR_049829)	94	NR_049829	100846991		NR_049829	miRBase:MI0018176	MIR5197	-	microRNA 5197	ncRNA
19-PTNLD28-TUMOR_peak_58487	chr2	220173005	220173093	+	6.69625	NA	intron (NM_001199763, intron 1 of 21)	CpG	680	NM_001199764	5798	Hs.89655	NM_002846	HPRD:03466	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase, receptor type, N	protein-coding
19-PTNLD28-TUMOR_peak_29078	chr13	111229235	111229323	+	6.69625	NA	Intergenic	L1MC2|LINE|L1	-15208	NM_017817	55647	Hs.743563	NM_017817	HPRD:06694	RAB20	-	RAB20, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_68437	chr3	54319419	54319519	+	6.69625	NA	intron (NM_018398, intron 2 of 37)	L1PA4|LINE|L1	162776	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_17393	chr11	15388977	15389084	+	6.69625	NA	Intergenic	Intergenic	218382	NM_001278313	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_23870	chr12	43686575	43686750	+	6.69625	NA	Intergenic	L2a|LINE|L2	259062	NM_025003	80070	Hs.287554	NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif, 20	protein-coding
19-PTNLD28-TUMOR_peak_46048	chr18	59221672	59221765	+	6.69625	NA	exon (NM_031891, exon 11 of 11)	exon (NM_031891, exon 11 of 11)	63943	NM_031891	28316	Hs.671510	NM_031891	HPRD:10429	CDH20	CDH7L3|Cdh7	cadherin 20, type 2	protein-coding
19-PTNLD28-TUMOR_peak_107540	chrX	11083145	11083259	+	6.69625	NA	Intergenic	Intergenic	-46204	NM_001122608	3052	Hs.211571	NM_005333	HPRD:02085	HCCS	CCHL|MCOPS7|MLS	holocytochrome c synthase	protein-coding
19-PTNLD28-TUMOR_peak_15518	chr10	106801817	106801931	+	6.69625	NA	intron (NM_014978, intron 4 of 26)	L2c|LINE|L2	-375900	NR_104028	100505890	Hs.348526	NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49039	chr19	40457733	40457821	+	6.69625	NA	Intergenic	Intergenic	-17244	NM_003890	8857	Hs.111732	NM_003890	HPRD:10956	FCGBP	FC(GAMMA)BP	Fc fragment of IgG binding protein	protein-coding
19-PTNLD28-TUMOR_peak_91527	chr7	21345134	21345268	+	6.69625	NA	Intergenic	Intergenic	-122488	NM_003112	6671	Hs.88013	NM_003112	HPRD:02764	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_22882	chr12	7950502	7950596	+	6.69625	NA	Intergenic	Intergenic	8557	NM_024865	79923	Hs.635882	NM_024865	HPRD:06397	NANOG	-	Nanog homeobox	protein-coding
19-PTNLD28-TUMOR_peak_109026	chrX	103087106	103087470	+	6.69625	NA	promoter-TSS (NM_016370)	promoter-TSS (NM_016370)	-76	NM_016370	51209	Hs.522736	NM_016370	HPRD:02237	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_94993	chr7	122330320	122330413	+	6.69625	NA	intron (NM_001009571, intron 2 of 27)	HERVL18-int|LTR|ERVL	8842	NM_139175	168433	Hs.126730	NM_139175	HPRD:11505	RNF133	-	ring finger protein 133	protein-coding
19-PTNLD28-TUMOR_peak_79632	chr5	40402142	40402262	+	6.69625	NA	Intergenic	MIRc|SINE|MIR	-277830	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_77365	chr4	143395079	143395256	+	6.69625	NA	intron (NM_003866, intron 2 of 26)	L1PA14|LINE|L1	372437	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_84671	chr6	776021	776158	+	6.69625	NA	Intergenic	Intergenic	-82948	NM_018303	55770	Hs.484412	NM_018303	HPRD:11544	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
19-PTNLD28-TUMOR_peak_80765	chr5	75252688	75252923	+	6.69625	NA	Intergenic	ERVL-E-int|LTR|ERVL	-126434	NM_014979	22987	Hs.663229	NM_014979	HPRD:18753	SV2C	-	synaptic vesicle glycoprotein 2C	protein-coding
19-PTNLD28-TUMOR_peak_28514	chr13	76455475	76455710	+	6.69625	NA	intron (NM_001257995, intron 3 of 3)	intron (NM_001257995, intron 3 of 3)	10418	NM_001257995	729420	Hs.586820	NM_001257995	ENSG00000178734	LMO7DN	C13orf45	LMO7 downstream neighbor	protein-coding
19-PTNLD28-TUMOR_peak_64919	chr22	27987170	27987263	+	6.69625	NA	Intergenic	Intergenic	210270	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_23693	chr12	32819499	32819676	+	6.69625	NA	Intergenic	MER51A|LTR|ERV1	-12547	NM_001278465	10059	Hs.556296	NM_005690	HPRD:04833	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|HDYNIV	dynamin 1-like	protein-coding
19-PTNLD28-TUMOR_peak_1672	chr1	26648177	26648267	+	6.69625	NA	TTS (NM_001039775)	TTS (NM_001039775)	-3466	NM_145345	91544	Hs.145061	NM_145345	HPRD:10245	UBXN11	COA-1|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
19-PTNLD28-TUMOR_peak_58645	chr2	225661414	225661591	+	6.69625	NA	intron (NM_001290263, intron 43 of 55)	intron (NM_001290263, intron 43 of 55)	150280	NM_001290263	55619	Hs.46578	NM_014689	HPRD:10919	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
19-PTNLD28-TUMOR_peak_48485	chr19	31939185	31939475	+	6.69625	NA	Intergenic	Intergenic	-99140	NM_020856	57616	Hs.278436	NM_020856	HPRD:18351	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_52895	chr2	57557745	57557833	+	6.69625	NA	Intergenic	Intergenic	-576997	NM_001288837	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_5921	chr1	118916652	118916745	+	6.69625	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-188850	NM_206996	200162	Hs.528821	NM_206996	HPRD:10146	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding
19-PTNLD28-TUMOR_peak_76422	chr4	103084675	103084772	+	6.69625	NA	Intergenic	PABL_B|LTR|ERV1	160746	NM_001135148	64116	Hs.288034	NM_022154	HPRD:12286	SLC39A8	BIGM103|LZT-Hs6|ZIP8	solute carrier family 39 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_76642	chr4	113031033	113031157	+	6.69625	NA	Intergenic	LTR50|LTR|ERVL	-35458	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_110300	chrY	16973423	16973543	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-57570	NR_046504	100874056	Hs.743197	NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25621	chr12	94528173	94528266	+	6.69625	NA	Intergenic	Intergenic	-14280	NM_005761	10154	Hs.584845	NM_005761	HPRD:05036	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
19-PTNLD28-TUMOR_peak_67492	chr3	36208082	36208227	+	6.69625	NA	Intergenic	Intergenic	-213825	NM_001292049	6769	Hs.56045	NM_003149	HPRD:11890	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
19-PTNLD28-TUMOR_peak_99540	chr8	95078101	95078268	+	6.69625	NA	Intergenic	L1MB2|LINE|L1	142631	NM_004063	1015	Hs.591853	NM_004063	HPRD:04312	CDH17	CDH16|HPT-1|HPT1	cadherin 17, LI cadherin (liver-intestine)	protein-coding
19-PTNLD28-TUMOR_peak_92401	chr7	46760463	46760580	+	6.69625	NA	Intergenic	Intergenic	-799650	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_36266	chr16	11012700	11012845	+	6.69625	NA	intron (NR_104444, intron 14 of 17)	intron (NR_104444, intron 14 of 17)	23485	NM_014015	28955	Hs.592051	NM_014015	HPRD:16798	DEXI	MYLE	Dexi homolog (mouse)	protein-coding
19-PTNLD28-TUMOR_peak_28921	chr13	104676878	104676966	+	6.69625	NA	Intergenic	Intergenic	-742074	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_109788	chrX	150768601	150768776	+	6.69625	NA	intron (NM_173493, intron 1 of 15)	SVA_B|Other|Other	36681	NM_173493	139135	Hs.160594	NM_173493	HPRD:06613	PASD1	CT63|OXTES1	PAS domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53702	chr2	83309029	83309165	+	6.69625	NA	Intergenic	MER58A|DNA|hAT-Charlie	225170	NR_033423	1720	Hs.169235	NR_033423	ENSG00000168129	LOC1720	-	dihydrofolate reductase pseudogene	pseudo
19-PTNLD28-TUMOR_peak_43082	chr17	65775091	65775184	+	6.69625	NA	Intergenic	AluYa5|SINE|Alu	38351	NR_003706	100124536	Hs.693446	NR_003706		SNORA38B	-	small nucleolar RNA, H/ACA box 38B	snoRNA
19-PTNLD28-TUMOR_peak_74938	chr4	37814390	37814577	+	6.69625	NA	Intergenic	HAL1|LINE|L1	-13799	NM_018290	55276	Hs.23363	NM_018290	HPRD:11761	PGM2	-	phosphoglucomutase 2	protein-coding
19-PTNLD28-TUMOR_peak_34809	chr15	81567462	81567606	+	6.69625	NA	intron (NM_001172128, intron 6 of 18)	intron (NM_001172128, intron 6 of 18)	-21720	NM_004513	3603	Hs.459095	NM_004513	HPRD:04329	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
19-PTNLD28-TUMOR_peak_79090	chr5	16246266	16246484	+	6.69625	NA	Intergenic	Intergenic	-66478	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_20820	chr11	100812847	100812966	+	6.69625	NA	intron (NM_152432, intron 9 of 23)	intron (NM_152432, intron 9 of 23)	-49905	NM_032021	83935	Hs.44004	NM_032021	HPRD:12425	TMEM133	-	transmembrane protein 133	protein-coding
19-PTNLD28-TUMOR_peak_5068	chr1	95693382	95693487	+	6.69625	NA	intron (NM_001199691, intron 6 of 7)	AluY|SINE|Alu	-6277	NR_103483	25950	Hs.483512	NM_015485	HPRD:11527	RWDD3	RSUME	RWD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_14168	chr10	72785459	72785594	+	6.69625	NA	Intergenic	Intergenic	-136983	NM_000281	5092	Hs.3192	NM_000281	HPRD:00523	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_76412	chr4	102728193	102728286	+	6.69625	NA	intron (NM_001127507, intron 1 of 15)	intron (NM_001127507, intron 1 of 15)	-6744	NM_001083907	55024	Hs.480400	NM_017935	HPRD:09819	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_77349	chr4	142635045	142635177	+	6.69625	NA	intron (NM_172175, intron 3 of 9)	L2a|LINE|L2	77362	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_23558	chr12	28651021	28651126	+	6.69625	NA	intron (NM_018318, intron 11 of 11)	intron (NM_018318, intron 11 of 11)	240940	NM_018318	55297	Hs.653125	NM_018318	HPRD:16905	CCDC91	p56	coiled-coil domain containing 91	protein-coding
19-PTNLD28-TUMOR_peak_102588	chr9	28801589	28801677	+	6.69625	NA	intron (NM_001258282, intron 2 of 6)	intron (NM_001258282, intron 2 of 6)	62071	NR_030597	100126310		NR_030597	miRBase:MI0005542	MIR876	MIRN876|hsa-mir-876	microRNA 876	ncRNA
19-PTNLD28-TUMOR_peak_62004	chr20	51657471	51657594	+	6.69625	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	68586	NM_173485	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_28945	chr13	106458860	106459056	+	6.69625	NA	Intergenic	Intergenic	99779	NR_046391	144920	Hs.567700	NR_046391		LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
19-PTNLD28-TUMOR_peak_88234	chr6	71079119	71079207	+	6.69625	NA	Intergenic	Intergenic	-43944	NM_020819	57579	Hs.211700	NM_020819	HPRD:11144	FAM135A	KIAA1411	family with sequence similarity 135, member A	protein-coding
19-PTNLD28-TUMOR_peak_46151	chr18	63920029	63920133	+	6.69625	NA	Intergenic	Intergenic	351294	NR_073130	28513	Hs.42771	NM_021153	HPRD:04311	CDH19	CDH7|CDH7L2	cadherin 19, type 2	protein-coding
19-PTNLD28-TUMOR_peak_78111	chr4	176384232	176384349	+	6.69625	NA	Intergenic	HERVH-int|LTR|ERV1	324537	NM_001261448	2823	Hs.75819	NM_005277	HPRD:03174	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
19-PTNLD28-TUMOR_peak_13674	chr10	54725739	54725827	+	6.69625	NA	Intergenic	MER52A|LTR|ERV1	-194323	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_62256	chr20	55907676	55907768	+	6.69625	NA	intron (NM_012444, intron 2 of 12)	intron (NM_012444, intron 2 of 12)	2891	NM_198265	23626	Hs.159737	NM_012444	HPRD:09236	SPO11	CT35|SPATA43|TOPVIA	SPO11 meiotic protein covalently bound to DSB	protein-coding
19-PTNLD28-TUMOR_peak_49431	chr19	46210687	46210790	+	6.69625	NA	Intergenic	AluSx4|SINE|Alu	14997	NM_017659	54814	Hs.631556	NM_017659	HPRD:08612	QPCTL	gQC	glutaminyl-peptide cyclotransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_101235	chr8	135898804	135898941	+	6.69625	NA	Intergenic	Intergenic	36694	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
19-PTNLD28-TUMOR_peak_3941	chr1	61784036	61784282	+	6.69625	NA	intron (NM_001145511, intron 3 of 10)	intron (NM_001145511, intron 3 of 10)	-64969	NR_104180	645030	Hs.632410	NR_104180		NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33590	chr15	52199781	52199950	+	6.69625	NA	intron (NM_014547, intron 9 of 9)	MIRb|SINE|MIR	16452	NR_109775	100422556	Hs.664788	NR_109775		LOC100422556	-	Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_27970	chr13	41593459	41593584	+	6.69625	NA	promoter-TSS (NM_172373)	promoter-TSS (NM_172373)	-13	NM_172373	1997	Hs.135646	NM_172373	HPRD:01808	ELF1	-	E74-like factor 1 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_65606	chr22	40349947	40350090	+	6.69625	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	7197	NM_001291825	9402	Hs.517499	NM_004810	HPRD:05156	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2-related adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_14499	chr10	79909114	79909212	+	6.69625	NA	Intergenic	Intergenic	-99219	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
19-PTNLD28-TUMOR_peak_105385	chr9	113126861	113126971	+	6.69625	NA	TTS (NM_153366)	TTS (NM_153366)	-26752	NM_001286947	255220	Hs.147064	NM_001003936	HPRD:18251	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
19-PTNLD28-TUMOR_peak_44619	chr18	11972115	11972203	+	6.69625	NA	Intergenic	AluYa5|SINE|Alu	-9268	NM_014214	3613	Hs.743311	NM_014214	HPRD:09329	IMPA2	-	inositol(myo)-1(or 4)-monophosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_31513	chr14	81648184	81648308	+	6.69625	NA	intron (NM_201595, intron 8 of 8)	L3|LINE|CR1	20932	NR_003021	677845	Hs.693251	NR_003021		SNORA79	ACA65	small nucleolar RNA, H/ACA box 79	snoRNA
19-PTNLD28-TUMOR_peak_58996	chr2	236054234	236054368	+	6.69625	NA	Intergenic	Intergenic	193673	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_27133	chr12	128442009	128442153	+	6.69625	NA	Intergenic	Intergenic	42126	NR_046392	100862680	Hs.385496	NR_046392	ENSG00000256193	LINC00507	-	long intergenic non-protein coding RNA 507	ncRNA
19-PTNLD28-TUMOR_peak_77165	chr4	139951922	139952022	+	6.69625	NA	intron (NM_012118, intron 1 of 2)	intron (NM_012118, intron 1 of 2)	15059	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_76113	chr4	86655640	86655886	+	6.69625	NA	intron (NM_001025616, intron 3 of 9)	intron (NM_001025616, intron 3 of 9)	12142	NR_039656	100616349		NR_039656		MIR4451	-	microRNA 4451	ncRNA
19-PTNLD28-TUMOR_peak_77396	chr4	144829070	144829158	+	6.69625	NA	Intergenic	Intergenic	-2398	NM_198682	2996	Hs.654368	NM_002102	HPRD:00723	GYPE	GPE|MNS|MiIX	glycophorin E (MNS blood group)	protein-coding
19-PTNLD28-TUMOR_peak_90044	chr6	151412018	151412174	+	6.69625	NA	intron (NM_001242768, intron 26 of 27)	CpG	-149038	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_53231	chr2	68020368	68020485	+	6.69625	NA	Intergenic	Intergenic	32268	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LOC101927701	-	uncharacterized LOC101927701	ncRNA
19-PTNLD28-TUMOR_peak_36396	chr16	13861137	13861254	+	6.69625	NA	Intergenic	Intergenic	-152819	NM_005236	2072	Hs.567265	NM_005236	HPRD:00594	ERCC4	ERCC11|FANCQ|RAD1|XPF	excision repair cross-complementation group 4	protein-coding
19-PTNLD28-TUMOR_peak_93712	chr7	82977529	82977631	+	6.69625	NA	Intergenic	Intergenic	-185383	NM_033026	27445	Hs.12376	NM_014510	HPRD:16078	PCLO	ACZ	piccolo presynaptic cytomatrix protein	protein-coding
19-PTNLD28-TUMOR_peak_30136	chr14	49038021	49038148	+	6.69625	NA	Intergenic	Intergenic	-773867	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_72129	chr3	161217926	161218105	+	6.69625	NA	intron (NM_001080440, intron 2 of 3)	intron (NM_001080440, intron 2 of 3)	3419	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
19-PTNLD28-TUMOR_peak_88399	chr6	76159502	76159625	+	6.69625	NA	intron (NM_001300866, intron 1 of 6)	intron (NM_001300866, intron 1 of 6)	43982	NR_110608	27145	Hs.696158	NM_015687	HPRD:09533	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_39116	chr16	84788069	84788209	+	6.69625	NA	intron (NR_073578, intron 3 of 10)	intron (NR_073578, intron 3 of 10)	54584	NR_073578	9100	Hs.136778	NM_005153	HPRD:07029	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
19-PTNLD28-TUMOR_peak_81896	chr5	125226316	125226453	+	6.69625	NA	Intergenic	Intergenic	-288886	NR_105042	102546228	Hs.582529	NR_105042		LOC102546228	-	uncharacterized LOC102546228	ncRNA
19-PTNLD28-TUMOR_peak_87905	chr6	49817390	49817516	+	6.69625	NA	intron (NM_001131, intron 3 of 7)	intron (NM_001131, intron 3 of 7)	16765	NM_001131	167	Hs.109620	NM_001131	HPRD:03118	CRISP1	AEGL1|ARP|CRISP-1|HSCRISP1D|HSCRISP1G|HUMARP	cysteine-rich secretory protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25989	chr12	106011049	106011137	+	6.69625	NA	Intergenic	Intergenic	-86888	NR_110108	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_103855	chr9	75422081	75422169	+	6.69625	NA	intron (NM_138691, intron 18 of 23)	SVA_F|Other|Other	66900	NR_121180	101927258	Hs.586433	NR_121120		LINC01474	-	long intergenic non-protein coding RNA 1474	ncRNA
19-PTNLD28-TUMOR_peak_31486	chr14	79303268	79303438	+	6.69625	NA	intron (NM_004796, intron 7 of 16)	intron (NM_004796, intron 7 of 16)	433279	NM_004796	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_5912	chr1	118658329	118658444	+	6.69625	NA	intron (NM_206996, intron 3 of 48)	intron (NM_206996, intron 3 of 48)	69462	NM_206996	200162	Hs.528821	NM_206996	HPRD:10146	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding
19-PTNLD28-TUMOR_peak_57978	chr2	205889890	205890071	+	6.69625	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	479464	NM_057177	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_28620	chr13	82619575	82619787	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	1027155	NR_125770	103724386	Hs.539622	NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
19-PTNLD28-TUMOR_peak_76305	chr4	95688180	95688268	+	6.69625	NA	intron (NM_001203, intron 1 of 12)	intron (NM_001203, intron 1 of 12)	9096	NM_001203	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_36995	chr16	27807464	27807552	+	6.69625	NA	intron (NM_144675, intron 5 of 5)	intron (NM_144675, intron 5 of 5)	91970	NM_144675	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_92094	chr7	39544718	39544817	+	6.69625	NA	Intergenic	L2a|LINE|L2	-61208	NM_020192	57002	Hs.72168	NM_020192	HPRD:16669	YAE1D1	C7orf36	Yae1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_69356	chr3	97601789	97602089	+	6.69625	NA	intron (NM_153605, intron 7 of 21)	L2b|LINE|L2	61055	NM_153605	131544	Hs.733378	NM_153605		CRYBG3	DKFZp667G2110	beta-gamma crystallin domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_24981	chr12	64630477	64630569	+	6.69625	NA	Intergenic	LTR67B|LTR|ERVL	-14447	NM_001300941	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_33682	chr15	57065125	57065275	+	6.69625	NA	Intergenic	L2|LINE|L2	-38916	NM_001288589	54816	Hs.511477	NM_017661	HPRD:15448	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
19-PTNLD28-TUMOR_peak_78352	chr4	186177811	186177921	+	6.69625	NA	intron (NM_031953, intron 2 of 18)	AluJb|SINE|Alu	46582	NM_031953	83891	Hs.369091	NM_031953	HPRD:15414	SNX25	SBBI31	sorting nexin 25	protein-coding
19-PTNLD28-TUMOR_peak_92045	chr7	36860517	36860675	+	6.69625	NA	Intergenic	L1MB5|LINE|L1	-96442	NM_001637	313	Hs.488007	NM_001637	HPRD:00027	AOAH	-	acyloxyacyl hydrolase (neutrophil)	protein-coding
19-PTNLD28-TUMOR_peak_108593	chrX	67527673	67527946	+	6.69625	NA	intron (NM_002547, intron 2 of 24)	intron (NM_002547, intron 2 of 24)	125490	NM_002547	4983	Hs.128824	NM_002547	HPRD:02130	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
19-PTNLD28-TUMOR_peak_18065	chr11	35563463	35563622	+	6.69625	NA	Intergenic	Intergenic	-11694	NM_001282675	25891	Hs.55044	NM_015430	HPRD:07104	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
19-PTNLD28-TUMOR_peak_22081	chr11	128960149	128960246	+	6.69625	NA	intron (NM_001142685, intron 5 of 21)	intron (NM_001142685, intron 5 of 21)	-66109	NM_014715	9743	Hs.440379	NM_014715	HPRD:12257	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
19-PTNLD28-TUMOR_peak_81031	chr5	84589354	84589455	+	6.69625	NA	Intergenic	Intergenic	-908719	NM_001278642	10085	Hs.482730	NM_005711	HPRD:09350	EDIL3	DEL1	EGF-like repeats and discoidin I-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_62157	chr20	54003340	54003472	+	6.69625	NA	Intergenic	Intergenic	-36175	NR_110629	102723578	Hs.446269	NR_110629		LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA
19-PTNLD28-TUMOR_peak_88105	chr6	56229958	56230084	+	6.69625	NA	intron (NR_046940, intron 2 of 5)	intron (NR_046940, intron 2 of 5)	-117643	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_46943	chr19	7004484	7004590	+	6.69625	NA	TTS (NR_024372)	TTS (NR_024372)	1889	NR_024372	497049	Hs.367930	NM_001011541		FLJ25758	-	MAP/microtubule affinity-regulating kinase 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_65584	chr22	39874610	39874708	+	6.69625	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	-8570	NM_001098270	4248	Hs.276808	NM_002409	HPRD:07058	MGAT3	GNT-III|GNT3	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_50942	chr2	8944255	8944383	+	6.69625	NA	intron (NM_020738, intron 7 of 29)	intron (NM_020738, intron 7 of 29)	33436	NM_020738	57498	Hs.9873	NM_020738	HPRD:17235	KIDINS220	ARMS	kinase D-interacting substrate, 220kDa	protein-coding
19-PTNLD28-TUMOR_peak_29005	chr13	109610037	109610187	+	6.69625	NA	exon (NM_001198950, exon 17 of 35)	exon (NM_001198950, exon 17 of 35)	209539	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_40242	chr17	12906549	12906676	+	6.69625	NA	intron (NM_001165962, intron 11 of 22)	intron (NM_001165962, intron 11 of 22)	14769	NM_018127	60528	Hs.434232	NM_018127	HPRD:05641	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
19-PTNLD28-TUMOR_peak_15970	chr10	121999259	121999360	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	-217157	NM_001030059	196051	Hs.40479	NM_001030059	HPRD:18745	PPAPDC1A	DPPL2|PPAPDC1	phosphatidic acid phosphatase type 2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_18787	chr11	60214170	60214271	+	6.69625	NA	intron (NM_023945, intron 4 of 4)	AluSq2|SINE|Alu	-9062	NM_021950	931	Hs.712553	NM_021950	HPRD:00204	MS4A1	B1|Bp35|CD20|CVID5|LEU-16|MS4A2|S7	membrane-spanning 4-domains, subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_2479	chr1	37389891	37390079	+	6.69625	NA	intron (NM_000831, intron 1 of 15)	intron (NM_000831, intron 1 of 15)	109859	NM_000831	2899	Hs.128848	NM_000831	HPRD:00691	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate receptor, ionotropic, kainate 3	protein-coding
19-PTNLD28-TUMOR_peak_59702	chr20	7102427	7102518	+	6.69625	NA	Intergenic	L1HS|LINE|L1	132377	NR_110609	101929265	Hs.637730	NR_110609		LINC01428	-	long intergenic non-protein coding RNA 1428	ncRNA
19-PTNLD28-TUMOR_peak_85400	chr6	12090955	12091194	+	6.69625	NA	intron (NM_002114, intron 3 of 8)	intron (NM_002114, intron 3 of 8)	78350	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_83148	chr5	149275699	149275803	+	6.69625	NA	intron (NM_000440, intron 12 of 21)	intron (NM_000440, intron 12 of 21)	36789	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29351	chr14	21175961	21176061	+	6.69625	NA	Intergenic	LTR38|LTR|ERV1	19075	NM_194431	6038	Hs.283749	NM_002937	HPRD:03018	RNASE4	RAB1|RNS4	ribonuclease, RNase A family, 4	protein-coding
19-PTNLD28-TUMOR_peak_33536	chr15	50623191	50623289	+	6.69625	NA	intron (NM_005254, intron 1 of 8)	L2a|LINE|L2	-23131	NR_024490	100129387	Hs.659360	NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20029	chr11	74531899	74532045	+	6.69625	NA	intron (NM_001098638, intron 4 of 5)	MIRb|SINE|MIR	72059	NM_001098638	254225	Hs.370145	NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
19-PTNLD28-TUMOR_peak_52076	chr2	34330246	34330336	+	6.69625	NA	Intergenic	L1MC5|LINE|L1	-377007	NR_003143	151325	Hs.528847	NM_207329	HPRD:14793	MYADML	-	myeloid-associated differentiation marker-like (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_24245	chr12	51742883	51743018	+	6.69625	NA	Intergenic	AluJb|SINE|Alu	-2487	NM_001971	1990	Hs.348395	NM_001971	HPRD:00553	CELA1	ELA1	chymotrypsin-like elastase family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_923	chr1	14292417	14292564	+	6.69625	NA	Intergenic	LTR80A|LTR|ERVL	216614	NM_001007257	7799	Hs.371823	NM_012231	HPRD:03120	PRDM2	HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2	PR domain containing 2, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_13802	chr10	62332368	62332470	+	6.69625	NA	5' UTR (NM_001204404, exon 1 of 44)	5' UTR (NM_001204404, exon 1 of 44)	295	NM_001204404	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_100398	chr8	121205847	121205935	+	6.69625	NA	intron (NM_021110, intron 5 of 47)	L1PA3|LINE|L1	68544	NM_021110	7373	Hs.409662	NM_021110	HPRD:00379	COL14A1	UND	collagen, type XIV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_99032	chr8	67080458	67080624	+	6.69625	NA	intron (NM_033058, intron 10 of 10)	intron (NM_033058, intron 10 of 10)	10305	NM_000756	1392	Hs.75294	NM_000756	HPRD:07172	CRH	CRF	corticotropin releasing hormone	protein-coding
19-PTNLD28-TUMOR_peak_91325	chr7	13313919	13314022	+	6.69625	NA	Intergenic	L1PA4|LINE|L1	587059	NM_005738	10124	Hs.245540	NM_005738	HPRD:11987	ARL4A	ARL4	ADP-ribosylation factor-like 4A	protein-coding
19-PTNLD28-TUMOR_peak_31641	chr14	90625562	90625792	+	6.69625	NA	intron (NM_022054, intron 1 of 1)	intron (NM_022054, intron 1 of 1)	-97217	NM_002802	5700	Hs.356654	NM_002802	HPRD:04084	PSMC1	P26S4|S4|p56	proteasome (prosome, macropain) 26S subunit, ATPase, 1	protein-coding
19-PTNLD28-TUMOR_peak_33309	chr15	42971676	42971764	+	6.69625	NA	intron (NM_020759, intron 20 of 32)	intron (NM_020759, intron 20 of 32)	57697	NM_138477	146059	Hs.599232	NM_138477	HPRD:08470	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
19-PTNLD28-TUMOR_peak_73292	chr3	192932358	192932452	+	6.69625	NA	Intergenic	LTR40a|LTR|ERVL	-26512	NM_020386	57110	Hs.36761	NM_020386	HPRD:07577	HRASLS	A-C1|H-REV107|HRASLS1|HRSL1|HSD28	HRAS-like suppressor	protein-coding
19-PTNLD28-TUMOR_peak_77949	chr4	167356675	167356900	+	6.69625	NA	Intergenic	ERVL-B4-int|LTR|ERVL	562377	NM_012464	7092	Hs.106513	NM_012464	HPRD:07074	TLL1	ASD6|TLL	tolloid-like 1	protein-coding
19-PTNLD28-TUMOR_peak_70797	chr3	130377581	130377699	+	6.69625	NA	intron (NM_001102608, intron 33 of 35)	intron (NM_001102608, intron 33 of 35)	88056	NM_014602	30849	Hs.149032	NM_014602	HPRD:04010	PIK3R4	VPS15|p150	phosphoinositide-3-kinase, regulatory subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_52832	chr2	55036991	55037199	+	6.69625	NA	intron (NM_001039753, intron 1 of 40)	intron (NM_001039753, intron 1 of 40)	84946	NM_001039753	400954	Hs.656692	NM_001039753	ENSG00000214595	EML6	-	echinoderm microtubule associated protein like 6	protein-coding
19-PTNLD28-TUMOR_peak_28091	chr13	45694851	45694973	+	6.69625	NA	intron (NM_004128, intron 1 of 7)	CpG	281	NM_004128	2963	Hs.654582	NM_004128	HPRD:01804	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF, polypeptide 2, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_104012	chr9	80548062	80548156	+	6.69625	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	98256	NM_002072	2776	Hs.269782	NM_002072		GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	guanine nucleotide binding protein (G protein), q polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_11663	chr10	2274117	2274368	+	6.69625	NA	Intergenic	Intergenic	83026	NR_038884	399708	Hs.521270	NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	ncRNA
19-PTNLD28-TUMOR_peak_35370	chr15	96961417	96961580	+	6.69625	NA	Intergenic	Intergenic	84929	NM_001145157	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_107442	chrX	6578721	6578826	+	6.69625	NA	Intergenic	Intergenic	-125614	NM_016379	51481	Hs.170076	NM_016379	HPRD:18280	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
19-PTNLD28-TUMOR_peak_17067	chr11	10130965	10131076	+	6.69625	NA	intron (NM_030962, intron 2 of 39)	intron (NM_030962, intron 2 of 39)	184734	NM_030962	81846	Hs.577252	NM_030962	HPRD:09649	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_80165	chr5	60615624	60615812	+	6.69625	NA	Intergenic	Intergenic	-12382	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_28461	chr13	73836112	73836271	+	6.69625	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	203261	NM_001730	688	Hs.508234	NM_001730	HPRD:04212	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_21660	chr11	120581207	120581430	+	6.69625	NA	intron (NM_001282470, intron 2 of 19)	intron (NM_001282470, intron 2 of 19)	146123	NM_001282473	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_35374	chr15	97630690	97630829	+	6.69625	NA	Intergenic	Intergenic	304080	NM_173499	145946	Hs.326528	NM_173499	HPRD:15432	SPATA8	SRG8	spermatogenesis associated 8	protein-coding
19-PTNLD28-TUMOR_peak_28429	chr13	71599791	71599879	+	6.69625	NA	intron (NR_047699, intron 1 of 3)	AluY|SINE|Alu	10562	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
19-PTNLD28-TUMOR_peak_91552	chr7	22180302	22180488	+	6.69625	NA	intron (NM_012294, intron 20 of 25)	intron (NM_012294, intron 20 of 25)	-194853	NM_001127370	55536	Hs.744069	NM_018719	HPRD:11481	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7-like	protein-coding
19-PTNLD28-TUMOR_peak_28867	chr13	101540036	101540258	+	6.69625	NA	intron (NR_047687, intron 2 of 7)	intron (NR_047687, intron 2 of 7)	56471	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
19-PTNLD28-TUMOR_peak_46147	chr18	62948615	62948784	+	6.69625	NA	Intergenic	LTR19A|LTR|ERV1	-468789	NM_033646	1005	Hs.657522	NM_004361	HPRD:12049	CDH7	CDH7L1	cadherin 7, type 2	protein-coding
19-PTNLD28-TUMOR_peak_101346	chr8	139988169	139988258	+	6.69625	NA	Intergenic	Intergenic	-61977	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_27958	chr13	41351646	41351810	+	6.69625	NA	Intergenic	Intergenic	-6381	NM_005830	10240	Hs.596607	NM_005830	HPRD:10098	MRPS31	IMOGN38|MRP-S31|S31mt	mitochondrial ribosomal protein S31	protein-coding
19-PTNLD28-TUMOR_peak_79229	chr5	22560347	22560505	+	6.69625	NA	intron (NM_004061, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	293305	NM_004061	1010	Hs.113684	NM_004061	HPRD:11081	CDH12	CDHB	cadherin 12, type 2 (N-cadherin 2)	protein-coding
19-PTNLD28-TUMOR_peak_40202	chr17	10572341	10572429	+	6.69625	NA	Intergenic	MIRc|SINE|MIR	-11759	NM_002470	4621	Hs.440895	NM_002470	HPRD:01172	MYH3	HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin, heavy chain 3, skeletal muscle, embryonic	protein-coding
19-PTNLD28-TUMOR_peak_40478	chr17	18615854	18615942	+	6.69625	NA	Intergenic	Intergenic	-9504	NM_001037330	147166	Hs.164324	NM_001037330	HPRD:18731	TRIM16L	TRIM70	tripartite motif containing 16-like	protein-coding
19-PTNLD28-TUMOR_peak_8920	chr1	186732281	186732394	+	6.69625	NA	Intergenic	Intergenic	-65695	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_34308	chr15	71034311	71034399	+	6.69625	NA	intron (NM_018003, intron 1 of 18)	intron (NM_018003, intron 1 of 18)	21495	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_29684	chr14	30018213	30018313	+	6.69625	NA	intron (NR_039672, intron 1 of 4)	intron (NR_039672, intron 1 of 4)	156345	NR_039672	100616347		NR_039672	miRBase:MI0016813	MIR548AI	-	microRNA 548ai	ncRNA
19-PTNLD28-TUMOR_peak_48374	chr19	29284679	29284895	+	6.69625	NA	Intergenic	CpG	-66186	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_17861	chr11	32638626	32638815	+	6.69625	NA	intron (NM_001008391, intron 14 of 17)	L2c|LINE|L2	33407	NM_006360	10480	Hs.502244	NM_006360		EIF3M	B5|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3, subunit M	protein-coding
19-PTNLD28-TUMOR_peak_85258	chr6	10178120	10178208	+	6.69625	NA	Intergenic	Intergenic	-234387	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58262	chr2	216401411	216401580	+	6.69625	NA	Intergenic	Intergenic	83065	NR_110607	102724849	Hs.116161	NR_110607		LOC102724849	-	uncharacterized LOC102724849	ncRNA
19-PTNLD28-TUMOR_peak_82890	chr5	142814937	142815025	+	6.69625	NA	promoter-TSS (NM_001018074)	promoter-TSS (NM_001018074)	96	NM_001018077	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_108219	chrX	48285851	48285975	+	6.69625	NA	Intergenic	AluSz|SINE|Alu	-14558	NM_001040612	548313	Hs.558402	NM_001034832	ENSG00000198946	SSX4B	CT5.4	synovial sarcoma, X breakpoint 4B	protein-coding
19-PTNLD28-TUMOR_peak_4178	chr1	67191620	67191910	+	6.69625	NA	intron (NM_032291, intron 19 of 24)	intron (NM_032291, intron 19 of 24)	-26375	NM_152665	200132	Hs.479226	NM_152665	HPRD:08287	TCTEX1D1	-	Tctex1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_22571	chr12	3913163	3913279	+	6.69625	NA	Intergenic	Intergenic	-50855	NM_032680	84766	Hs.504534	NM_032680	HPRD:10079	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
19-PTNLD28-TUMOR_peak_48620	chr19	35130534	35130640	+	6.69625	NA	Intergenic	Intergenic	-6191	NR_045208	100130342	Hs.679909	NR_045208		SCGB2B3P	C2B|SCGB4A3P	secretoglobin, family 2B, member 3, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46976	chr19	7580803	7580935	+	6.69625	NA	promoter-TSS (NM_018083)	promoter-TSS (NM_018083)	-135	NM_018083	140467	Hs.133475	NM_018083	HPRD:10331	ZNF358	ZFEND	zinc finger protein 358	protein-coding
19-PTNLD28-TUMOR_peak_14934	chr10	94602945	94603068	+	6.69625	NA	intron (NM_001013848, intron 1 of 21)	intron (NM_001013848, intron 1 of 21)	-5219	NM_019053	54536	Hs.655657	NM_019053	HPRD:10216	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
19-PTNLD28-TUMOR_peak_55180	chr2	116196503	116196859	+	6.69625	NA	intron (NM_001004360, intron 3 of 25)	intron (NM_001004360, intron 3 of 25)	276997	NM_001004360	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_85204	chr6	8113641	8113763	+	6.69625	NA	Intergenic	L3|LINE|CR1	-10874	NM_004280	9521	Hs.602353	NM_004280	HPRD:10931	EEF1E1	AIMP3|P18	eukaryotic translation elongation factor 1 epsilon 1	protein-coding
19-PTNLD28-TUMOR_peak_13921	chr10	65572142	65572230	+	6.69625	NA	Intergenic	SVA_D|Other|Other	291063	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_17290	chr11	13064580	13064692	+	6.69625	NA	Intergenic	Intergenic	33666	NM_001080521	644943	Hs.134650	NM_001080521		RASSF10	-	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
19-PTNLD28-TUMOR_peak_109580	chrX	135229662	135229880	+	6.69625	NA	promoter-TSS (NM_001159700)	promoter-TSS (NM_001159700)	212	NM_001449	2273	Hs.435369	NM_001449	HPRD:02157	FHL1	FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
19-PTNLD28-TUMOR_peak_105731	chr9	119871246	119871379	+	6.69625	NA	intron (NM_014010, intron 3 of 21)	AluSz|SINE|Alu	72168	NR_003708	100124538	Hs.693445	NR_003708		SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
19-PTNLD28-TUMOR_peak_40127	chr17	8798375	8798493	+	6.69625	NA	intron (NM_001251851, intron 5 of 18)	intron (NM_001251851, intron 5 of 18)	17400	NM_014308	23533	Hs.278901	NM_014308	HPRD:11433	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase, regulatory subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_89605	chr6	137347770	137347884	+	6.69625	NA	intron (NM_014432, intron 1 of 6)	intron (NM_014432, intron 1 of 6)	17622	NM_001278722	53832	Hs.445868	NM_014432	HPRD:05729	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_23212	chr12	14537879	14537967	+	6.69625	NA	promoter-TSS (NM_181352)	promoter-TSS (NM_181352)	-75	NM_181352	55729	Hs.504856	NM_018179	HPRD:09811	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_31561	chr14	85707400	85707569	+	6.69625	NA	Intergenic	Intergenic	-152739	NR_102737	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_90282	chr6	158744467	158744584	+	6.69625	NA	intron (NM_001007466, intron 1 of 12)	intron (NM_001007466, intron 1 of 12)	10833	NM_020245	56995	Hs.486993	NM_020245	HPRD:18246	TULP4	TUSP	tubby like protein 4	protein-coding
19-PTNLD28-TUMOR_peak_81030	chr5	84589167	84589260	+	6.69625	NA	Intergenic	Intergenic	-908528	NM_001278642	10085	Hs.482730	NM_005711	HPRD:09350	EDIL3	DEL1	EGF-like repeats and discoidin I-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_20367	chr11	82843683	82843814	+	6.69625	NA	Intergenic	SVA_D|Other|Other	-24389	NM_015885	51585	Hs.128959	NM_015885		PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
19-PTNLD28-TUMOR_peak_1350	chr1	22061221	22061312	+	6.69625	NA	intron (NM_032236, intron 9 of 26)	intron (NM_032236, intron 9 of 26)	48422	NM_001032730	84196	Hs.467524	NM_032236	HPRD:15637	USP48	RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
19-PTNLD28-TUMOR_peak_39656	chr17	1892529	1892685	+	6.69625	NA	intron (NM_178568, intron 1 of 1)	L3|LINE|CR1	35571	NM_178568	146760	Hs.22917	NM_178568	HPRD:11523	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_56165	chr2	146742202	146742378	+	6.69625	NA	Intergenic	Intergenic	-602335	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_16824	chr11	5255764	5255923	+	6.69625	NA	promoter-TSS (NM_000519)	promoter-TSS (NM_000519)	15	NM_000519	3045	Hs.699280	NM_000519	HPRD:00787	HBD	-	hemoglobin, delta	protein-coding
19-PTNLD28-TUMOR_peak_27741	chr13	32199342	32199517	+	6.69625	NA	Intergenic	MIR|SINE|MIR	-114250	NM_130806	122042	Hs.680763	NM_130806	HPRD:05976	RXFP2	GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2	relaxin/insulin-like family peptide receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_69273	chr3	88162864	88162958	+	6.69625	NA	intron (NM_001195308, intron 2 of 3)	intron (NM_001195308, intron 2 of 3)	-25351	NM_018293	55279	Hs.591650	NM_018293	HPRD:07722	ZNF654	-	zinc finger protein 654	protein-coding
19-PTNLD28-TUMOR_peak_69834	chr3	112520694	112520792	+	6.69625	NA	Intergenic	L1ME3D|LINE|L1	44054	NM_001199215	344807	Hs.531814	NM_001008784	HPRD:16691	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_83062	chr5	148200510	148200619	+	6.69625	NA	Intergenic	L3|LINE|CR1	-5592	NM_000024	154	Hs.2551	NM_000024	HPRD:00187	ADRB2	ADRB2R|ADRBR|B2AR|BAR|BETA2AR	adrenoceptor beta 2, surface	protein-coding
19-PTNLD28-TUMOR_peak_78516	chr4	190779745	190779833	+	6.69625	NA	Intergenic	MER51C|LTR|ERV1	-82185	NM_004477	2483	Hs.203772	NM_004477	HPRD:03176	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_85660	chr6	16576750	16576884	+	6.69625	NA	intron (NM_001128164, intron 4 of 7)	intron (NM_001128164, intron 4 of 7)	184904	NM_001128164	6310	Hs.434961	NM_000332	HPRD:03333	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
19-PTNLD28-TUMOR_peak_100400	chr8	121350162	121350266	+	6.69625	NA	intron (NM_021110, intron 42 of 47)	intron (NM_021110, intron 42 of 47)	-107424	NM_022045	27085	Hs.657656	NM_022045	HPRD:12068	MTBP	MDM2BP	MDM2 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_96447	chr7	151779399	151779540	+	6.69625	NA	intron (NM_022087, intron 1 of 11)	LTR10C|LTR|ERV1	56691	NM_022087	63917	Hs.647109	NM_022087	HPRD:13560	GALNT11	GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
19-PTNLD28-TUMOR_peak_28172	chr13	47578278	47578470	+	6.69625	NA	Intergenic	Intergenic	-107163	NM_000621	3356	Hs.72630	NM_000621	HPRD:01638	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_27645	chr13	30267822	30267984	+	6.69625	NA	Intergenic	Intergenic	-98078	NM_003045	6541	Hs.14846	NM_003045	HPRD:00091	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding
19-PTNLD28-TUMOR_peak_106635	chr9	137127868	137127989	+	6.69625	NA	Intergenic	Intergenic	-90381	NM_002957	6256	Hs.590886	NM_002957		RXRA	NR2B1	retinoid X receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_8758	chr1	183401772	183401923	+	6.69625	NA	Intergenic	Intergenic	-14213	NM_015039	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_56299	chr2	151443460	151443614	+	6.69625	NA	Intergenic	Intergenic	-14802	NR_110241	101929260	Hs.732324	NR_110241	ENSG00000236049	LOC101929260	-	uncharacterized LOC101929260	ncRNA
19-PTNLD28-TUMOR_peak_108569	chrX	65042076	65042278	+	6.69625	NA	Intergenic	CpG	154666	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_13264	chr10	44820703	44820837	+	6.69625	NA	Intergenic	MIRb|SINE|MIR	32572	NM_001258000	100130539	Hs.694626	NM_001258000		LOC100130539	-	uncharacterized LOC100130539	protein-coding
19-PTNLD28-TUMOR_peak_11917	chr10	7523036	7523214	+	6.69625	NA	Intergenic	Intergenic	-69677	NM_001029880	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_12337	chr10	22013767	22013910	+	6.69625	NA	intron (NM_001195626, intron 13 of 21)	intron (NM_001195626, intron 13 of 21)	190264	NM_001195626	8028	Hs.30385	NM_004641	HPRD:03874	MLLT10	AF10	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	protein-coding
19-PTNLD28-TUMOR_peak_107495	chrX	9339054	9339203	+	6.69625	NA	Intergenic	Intergenic	-92207	NM_001139468	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_12035	chr10	12166065	12166181	+	6.69625	NA	TTS (NM_018706)	TTS (NM_018706)	-5517	NM_018144	55176	Hs.112955	NM_018144	HPRD:15317	SEC61A2	-	Sec61 alpha 2 subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_51622	chr2	25857157	25857353	+	6.69625	NA	intron (NM_183360, intron 3 of 19)	SVA_D|Other|Other	15836	NM_001256308	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_23882	chr12	44300697	44300849	+	6.69625	NA	intron (NM_001286213, intron 2 of 6)	L1PA3|LINE|L1	71109	NM_001286213	84216	Hs.444668	NM_032256	HPRD:13193	TMEM117	-	transmembrane protein 117	protein-coding
19-PTNLD28-TUMOR_peak_43287	chr17	72148944	72149032	+	6.69625	NA	Intergenic	Intergenic	-50807	NM_000999	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_32419	chr14	107120002	107120299	+	6.69625	NA	Intergenic	Intergenic	181705	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_80839	chr5	77269189	77269277	+	6.69625	NA	Intergenic	Intergenic	15162	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
19-PTNLD28-TUMOR_peak_82632	chr5	139860324	139860485	+	6.69625	NA	intron (NM_020690, intron 10 of 35)	L2c|LINE|L2	-66847	NM_003732	8637	Hs.594084	NM_003732	HPRD:09149	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_15625	chr10	112431942	112432037	+	6.69625	NA	intron (NM_001134363, intron 1 of 13)	CpG	27834	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
19-PTNLD28-TUMOR_peak_45327	chr18	37352643	37352748	+	6.69625	NA	Intergenic	Intergenic	-20736	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	ncRNA
19-PTNLD28-TUMOR_peak_83685	chr5	163011472	163011570	+	6.69625	NA	Intergenic	SVA_B|Other|Other	78987	NM_013283	27430	Hs.54642	NM_013283	HPRD:05701	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase II, beta	protein-coding
19-PTNLD28-TUMOR_peak_102956	chr9	36804054	36804192	+	6.69625	NA	Intergenic	Intergenic	19473	NR_039686	100616289		NR_039686	miRBase:MI0016827	MIR4475	-	microRNA 4475	ncRNA
19-PTNLD28-TUMOR_peak_98493	chr8	42529288	42529408	+	6.69625	NA	Intergenic	Intergenic	-23214	NM_000749	1142	Hs.654576	NM_000749	HPRD:00336	CHRNB3	-	cholinergic receptor, nicotinic, beta 3 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_88411	chr6	76821087	76821202	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-38749	NM_001282368	3617	Hs.590893	NM_001563	HPRD:04186	IMPG1	GP147|IPM150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding
19-PTNLD28-TUMOR_peak_12577	chr10	27672987	27673220	+	6.69625	NA	Intergenic	Intergenic	30194	NM_001034842	374308	Hs.631832	NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_46030	chr18	57711599	57711780	+	6.69625	NA	Intergenic	Intergenic	144497	NM_021127	5366	Hs.96	NM_021127	HPRD:12002	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
19-PTNLD28-TUMOR_peak_62424	chr20	58466796	58466901	+	6.69625	NA	intron (NM_014258, intron 23 of 43)	L2a|LINE|L2	40361	NM_014258	10388	Hs.202676	NM_014258	HPRD:06822	SYCP2	SCP2	synaptonemal complex protein 2	protein-coding
19-PTNLD28-TUMOR_peak_103265	chr9	43633280	43633372	+	6.69625	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2596	NM_001145196	389730	Hs.455299	NM_001145196	ENSG00000185775	SPATA31A6	FAM75A6	SPATA31 subfamily A, member 6	protein-coding
19-PTNLD28-TUMOR_peak_42569	chr17	56301864	56301952	+	6.69625	NA	Intergenic	L1MC4|LINE|L1	-4942	NM_001165927	54903	Hs.408843	NM_017777	HPRD:07900	MKS1	BBS13|MES|MKS|POC12	Meckel syndrome, type 1	protein-coding
19-PTNLD28-TUMOR_peak_31883	chr14	95967462	95967557	+	6.69625	NA	Intergenic	Intergenic	-25336	NM_152592	161176	Hs.354645	NM_152592	HPRD:12652	SYNE3	C14orf49|NET53|Nesp3	spectrin repeat containing, nuclear envelope family member 3	protein-coding
19-PTNLD28-TUMOR_peak_12968	chr10	36555998	36556112	+	6.69625	NA	Intergenic	Intergenic	488825	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_98117	chr8	33192309	33192490	+	6.69625	NA	Intergenic	Intergenic	138265	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_59831	chr20	11696947	11697081	+	6.69625	NA	Intergenic	LTR16A1|LTR|ERVL	154349	NR_110635	728450	Hs.560990	NR_110635		LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
19-PTNLD28-TUMOR_peak_108579	chrX	65948711	65948821	+	6.69625	NA	Intergenic	Intergenic	-89626	NM_001199687	60401	Hs.302017	NM_021783	HPRD:02230	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_97946	chr8	29034637	29034725	+	6.69625	NA	intron (NM_015254, intron 9 of 39)	MER20|DNA|hAT-Charlie	85929	NM_015254	23303	Hs.444767	NM_015254	HPRD:09556	KIF13B	GAKIN	kinesin family member 13B	protein-coding
19-PTNLD28-TUMOR_peak_62160	chr20	54072934	54073076	+	6.69625	NA	Intergenic	Intergenic	-29270	NR_110064	101927796	Hs.737040	NR_110064	ENSG00000224008	LINC01441	-	long intergenic non-protein coding RNA 1441	ncRNA
19-PTNLD28-TUMOR_peak_75118	chr4	45455408	45455500	+	6.69625	NA	Intergenic	LTR41B|LTR|ERVL	670628	NM_173536	2565	Hs.375051	NM_173536	HPRD:15923	GABRG1	-	gamma-aminobutyric acid (GABA) A receptor, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_72160	chr3	165523994	165524296	+	6.69625	NA	intron (NM_000055, intron 2 of 3)	L2a|LINE|L2	31108	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_68737	chr3	63777771	63777876	+	6.69625	NA	Intergenic	Intergenic	-27218	NR_026866	132200	Hs.506386	NM_138808	ENSG00000163632	C3orf49	-	chromosome 3 open reading frame 49	ncRNA
19-PTNLD28-TUMOR_peak_25096	chr12	67450300	67450400	+	6.69625	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	39714	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_62137	chr20	53399505	53399684	+	6.69625	NA	Intergenic	L1PA3|LINE|L1	307337	NM_177959	55816	Hs.473133	NM_018431	HPRD:16317	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
19-PTNLD28-TUMOR_peak_25666	chr12	95779142	95779249	+	6.69625	NA	Intergenic	Intergenic	75496	NR_037456	100500802		NR_037456	miRBase:MI0016086	MIR3685	-	microRNA 3685	ncRNA
19-PTNLD28-TUMOR_peak_69341	chr3	95985808	95985896	+	6.69625	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-92956	NR_107027	102465864		NR_107027		MIR8060	hsa-mir-8060	microRNA 8060	ncRNA
19-PTNLD28-TUMOR_peak_3436	chr1	50745766	50745854	+	6.69625	NA	Intergenic	Intergenic	143309	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
19-PTNLD28-TUMOR_peak_13888	chr10	64854201	64854427	+	6.69625	NA	Intergenic	L2a|LINE|L2	-38693	NM_001282405	29982	Hs.449628	NM_030759	HPRD:11401	NRBF2	COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_3790	chr1	58740183	58740278	+	6.69625	NA	Intergenic	L1PA2|LINE|L1	-24019	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_59962	chr20	17191787	17191927	+	6.69625	NA	Intergenic	Intergenic	-14895	NM_001201528	5126	Hs.315186	NM_002594	HPRD:01202	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
19-PTNLD28-TUMOR_peak_76445	chr4	103737284	103737378	+	6.69625	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	9686	NM_001300795	7323	Hs.518773	NM_003340	HPRD:04269	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin-conjugating enzyme E2D 3	protein-coding
19-PTNLD28-TUMOR_peak_28695	chr13	94996790	94996932	+	6.69625	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	135075	NM_001922	1638	Hs.301865	NM_001922	HPRD:01864	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding
19-PTNLD28-TUMOR_peak_29643	chr14	25536912	25537059	+	6.69625	NA	Intergenic	L3|LINE|CR1	-17890	NM_014178	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	amisyn	syntaxin binding protein 6 (amisyn)	protein-coding
19-PTNLD28-TUMOR_peak_8386	chr1	176765174	176765262	+	6.69625	NA	intron (NM_020318, intron 20 of 22)	intron (NM_020318, intron 20 of 22)	233363	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	ncRNA
19-PTNLD28-TUMOR_peak_74910	chr4	34378638	34378726	+	6.69625	NA	Intergenic	Intergenic	-1867056	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
19-PTNLD28-TUMOR_peak_15840	chr10	118526895	118527068	+	6.69625	NA	Intergenic	Intergenic	-24896	NM_025015	259217	Hs.648448	NM_025015	ENSG00000165868	HSPA12A	-	heat shock 70kDa protein 12A	protein-coding
19-PTNLD28-TUMOR_peak_45166	chr18	31603556	31603651	+	6.69625	NA	intron (NM_001198546, intron 5 of 9)	intron (NM_001198546, intron 5 of 9)	24973	NM_001198549	8715	Hs.514795	NM_003787	HPRD:04657	NOL4	CT125|NOLP	nucleolar protein 4	protein-coding
19-PTNLD28-TUMOR_peak_85766	chr6	18596624	18596757	+	6.69625	NA	Intergenic	Intergenic	24675	NR_030312	693125		NR_030312	miRBase:MI0003593	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
19-PTNLD28-TUMOR_peak_33851	chr15	62042847	62043118	+	6.69625	NA	Intergenic	Intergenic	309682	NM_017684	54832	Hs.511668	NM_017684	HPRD:12323	VPS13C	-	vacuolar protein sorting 13 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_15274	chr10	103004289	103004391	+	6.69625	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	14989	NR_029380	399806	Hs.386143	NR_029380		LBX1-AS1	-	LBX1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_77935	chr4	166158128	166158288	+	6.69625	NA	intron (NM_007246, intron 3 of 14)	intron (NM_007246, intron 3 of 14)	27037	NM_001161522	11275	Hs.388668	NM_007246	HPRD:09311	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_110309	chrY	25291268	25291413	+	6.69625	NA	intron (NM_001005375, intron 18 of 22)	L1PA2|LINE|L1	53899	NM_004081	1617	Hs.70936	NM_004081	HPRD:15958	DAZ1	DAZ|SPGY	deleted in azoospermia 1	protein-coding
19-PTNLD28-TUMOR_peak_26073	chr12	107498567	107498734	+	6.69625	NA	Intergenic	Intergenic	-11015	NM_004075	1407	Hs.151573	NM_004075	HPRD:09050	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_17838	chr11	32319243	32319333	+	6.69625	NA	Intergenic	Intergenic	133075	NM_001198552	7490	Hs.591980	NM_000378	HPRD:06163	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
19-PTNLD28-TUMOR_peak_26075	chr12	107504000	107504219	+	6.69625	NA	Intergenic	MER41B|LTR|ERV1	-16474	NM_004075	1407	Hs.151573	NM_004075	HPRD:09050	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
19-PTNLD28-TUMOR_peak_61087	chr20	39302198	39302286	+	6.69625	NA	Intergenic	Intergenic	15638	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_92017	chr7	36130792	36130890	+	6.69625	NA	Intergenic	Intergenic	-4079	NR_108089	101928618	Hs.561704	NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
19-PTNLD28-TUMOR_peak_76169	chr4	87982203	87982332	+	6.69625	NA	intron (NM_001166693, intron 4 of 20)	intron (NM_001166693, intron 4 of 20)	54114	NM_005935	4299	Hs.480190	NM_005935	HPRD:08871	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_81415	chr5	105066765	105066854	+	6.69625	NA	Intergenic	Intergenic	631634	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_13950	chr10	69280848	69280938	+	6.69625	NA	intron (NM_001291133, intron 6 of 8)	intron (NM_001291133, intron 6 of 8)	144550	NM_001127384	29119	Hs.21375	NM_013266	HPRD:09639	CTNNA3	ARVD13|VR22	catenin (cadherin-associated protein), alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_23958	chr12	46836237	46836325	+	6.69625	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	58391	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_58055	chr2	208012889	208013106	+	6.69625	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-14136	NM_001270944	8609	Hs.59908	NM_003709	HPRD:07279	KLF7	UKLF	Kruppel-like factor 7 (ubiquitous)	protein-coding
19-PTNLD28-TUMOR_peak_20382	chr11	85036255	85036410	+	6.69625	NA	intron (NM_001142699, intron 3 of 27)	L1HS|LINE|L1	301982	NM_001142699	1740	Hs.367656	NM_001364	HPRD:04663	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs, large homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_70257	chr3	123562644	123562822	+	6.69625	NA	intron (NM_053025, intron 2 of 33)	intron (NM_053025, intron 2 of 33)	40416	NM_053026	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_19970	chr11	73627613	73627711	+	6.69625	NA	exon (NM_001267804, exon 10 of 13)	exon (NM_001267804, exon 10 of 13)	-33702	NM_153614	374407	Hs.567888	NM_153614	HPRD:15573	DNAJB13	RSPH16A|TSARG5|TSARG6	DnaJ (Hsp40) homolog, subfamily B, member 13	protein-coding
19-PTNLD28-TUMOR_peak_102575	chr9	27673744	27673941	+	6.69625	NA	Intergenic	Intergenic	-99978	NM_001256054	203228	Hs.493639	NM_018325	HPRD:12975	C9orf72	ALSFTD|FTDALS	chromosome 9 open reading frame 72	protein-coding
19-PTNLD28-TUMOR_peak_55628	chr2	129743913	129744106	+	6.69625	NA	Intergenic	Intergenic	121835	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_23135	chr12	13036411	13036554	+	6.69625	NA	Intergenic	Intergenic	-7474	NM_003979	9052	Hs.631733	NM_003979		GPRC5A	GPCR5A|RAI3|RAIG1	G protein-coupled receptor, class C, group 5, member A	protein-coding
19-PTNLD28-TUMOR_peak_5807	chr1	116901802	116901958	+	6.69625	NA	Intergenic	MIRc|SINE|MIR	-13915	NM_000701	476	Hs.371889	NM_000701	HPRD:01662	ATP1A1	-	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_42476	chr17	55383352	55383526	+	6.69625	NA	intron (NM_138962, intron 5 of 13)	intron (NM_138962, intron 5 of 13)	49065	NM_170721	124540	Hs.658922	NM_138962	HPRD:07438	MSI2	MSI2H	musashi RNA-binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_76889	chr4	122733065	122733188	+	6.69625	NA	intron (NM_005033, intron 8 of 11)	intron (NM_005033, intron 8 of 11)	10654	NM_001034194	5393	Hs.91728	NM_005033	HPRD:07315	EXOSC9	PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
19-PTNLD28-TUMOR_peak_9908	chr1	210465851	210466037	+	6.69625	NA	Intergenic	CpG	-35652	NM_001170564	55733	Hs.58650	NM_018194	HPRD:12041	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_91989	chr7	35055184	35055287	+	6.69625	NA	intron (NM_015283, intron 3 of 21)	MER41B|LTR|ERV1	22418	NM_015283	23333	Hs.408623	NM_015283	ENSG00000173852	DPY19L1	-	dpy-19-like 1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_30386	chr14	54766182	54766279	+	6.69625	NA	Intergenic	Intergenic	-97443	NM_001130851	1033	Hs.84113	NM_005192	HPRD:00450	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin-dependent kinase inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_46965	chr19	7489784	7489898	+	6.69625	NA	intron (NM_015318, intron 1 of 20)	AluSc|SINE|Alu	-14733	NM_001130955	23370	Hs.465761	NM_015318	HPRD:12479	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
19-PTNLD28-TUMOR_peak_91338	chr7	15238341	15238503	+	6.69625	NA	Intergenic	LTR8|LTR|ERV1	-357347	NM_004080	1607	Hs.567255	NM_004080	HPRD:06819	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase, beta 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_14778	chr10	89346015	89346211	+	6.69625	NA	Intergenic	LTR44|LTR|ERV1	-73363	NM_004670	9060	Hs.524491	NM_004670	HPRD:04303	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_73131	chr3	189281786	189281881	+	6.69625	NA	Intergenic	Intergenic	-67383	NM_001114978	8626	Hs.137569	NM_003722	HPRD:04469	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
19-PTNLD28-TUMOR_peak_41981	chr17	45854097	45854189	+	6.69625	NA	Intergenic	Intergenic	43533	NM_013351	30009	Hs.272409	NM_013351	HPRD:05355	TBX21	T-PET|T-bet|TBET|TBLYM	T-box 21	protein-coding
19-PTNLD28-TUMOR_peak_52451	chr2	43903609	43903716	+	6.69625	NA	promoter-TSS (NM_001101330)	promoter-TSS (NM_001101330)	-201	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
19-PTNLD28-TUMOR_peak_88553	chr6	84043716	84043907	+	6.69625	NA	intron (NM_002395, intron 5 of 13)	L1HS|LINE|L1	97127	NM_002395	4199	Hs.21160	NM_002395	HPRD:01102	ME1	HUMNDME|MES	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding
19-PTNLD28-TUMOR_peak_5531	chr1	111862877	111862971	+	6.69625	NA	exon (NM_021797, exon 9 of 9)	exon (NM_021797, exon 9 of 9)	-26258	NM_001300831	128344	Hs.172510	NM_181643	HPRD:14040	PIFO	C1orf88|pitchfork	primary cilia formation	protein-coding
19-PTNLD28-TUMOR_peak_83975	chr5	172068354	172068474	+	6.69619	NA	exon (NM_001142651, exon 1 of 5)	exon (NM_001142651, exon 1 of 5)	138	NM_001142651	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
19-PTNLD28-TUMOR_peak_73123	chr3	189073302	189073430	+	6.69619	NA	Intergenic	Intergenic	-114983	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_42361	chr17	52978875	52979117	+	6.69619	NA	intron (NM_005486, intron 1 of 15)	intron (NM_005486, intron 1 of 15)	944	NM_005486	10040	Hs.153504	NM_005486	HPRD:05266	TOM1L1	OK/KNS-CL.3|SRCASM	target of myb1 (chicken)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_106035	chr9	127042479	127042693	+	6.69566	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	-11664	NM_001166171	10783	Hs.197071	NM_014397	HPRD:05348	NEK6	SID6-1512	NIMA-related kinase 6	protein-coding
19-PTNLD28-TUMOR_peak_31420	chr14	77509961	77510201	+	6.69566	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	2689	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
19-PTNLD28-TUMOR_peak_59115	chr2	238605696	238605794	+	6.69566	NA	intron (NM_001137552, intron 1 of 10)	AluSq2|SINE|Alu	4938	NM_001137553	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91075	chr7	5466101	5466272	+	6.69327	NA	Intergenic	CpG-23978	-3009	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_87464	chr6	41907255	41907435	+	6.69160	NA	intron (NM_001136126, intron 1 of 3)	intron (NM_001136126, intron 1 of 3)	2241	NM_001760	896	Hs.534307	NM_001760	HPRD:00452	CCND3	-	cyclin D3	protein-coding
19-PTNLD28-TUMOR_peak_75613	chr4	71705519	71705934	+	6.69153	NA	promoter-TSS (NM_002092)	promoter-TSS (NM_002092)	-99	NM_002092	2926	Hs.309763	NM_002092	HPRD:07276	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
19-PTNLD28-TUMOR_peak_55766	chr2	132274279	132274451	+	6.69080	NA	intron (NR_026922, intron 12 of 17)	intron (NR_026922, intron 12 of 17)	-11042	NM_001258306	90557	Hs.351461	NM_138770	HPRD:14274	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
19-PTNLD28-TUMOR_peak_96186	chr7	148844189	148844300	+	6.68854	NA	promoter-TSS (NM_170686)	promoter-TSS (NM_170686)	-316	NM_170686	57541	Hs.632032	NM_020781	HPRD:18336	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
19-PTNLD28-TUMOR_peak_94492	chr7	101930187	101930438	+	6.68854	NA	intron (NM_020979, intron 1 of 6)	CpG	1959	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_93977	chr7	93633039	93633248	+	6.68318	NA	intron (NM_005868, intron 1 of 3)	intron (NM_005868, intron 1 of 3)	547	NM_005868	10282	Hs.489132	NM_005868	HPRD:16107	BET1	HBET1	Bet1 golgi vesicular membrane trafficking protein	protein-coding
19-PTNLD28-TUMOR_peak_21639	chr11	120187183	120187322	+	6.68318	NA	intron (NM_014352, intron 11 of 12)	AluJb|SINE|Alu	-8586	NM_174926	219902	Hs.643516	NM_174926	HPRD:14461	TMEM136	-	transmembrane protein 136	protein-coding
19-PTNLD28-TUMOR_peak_11262	chr1	240255699	240255874	+	6.68318	NA	exon (NM_020066, exon 1 of 18)	exon (NM_020066, exon 1 of 18)	601	NM_020066	56776	Hs.24889	NM_020066	HPRD:10449	FMN2	-	formin 2	protein-coding
19-PTNLD28-TUMOR_peak_91077	chr7	5467656	5467879	+	6.68059	NA	Intergenic	CpG-23978	-4590	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_50306	chr19	55020549	55020793	+	6.67835	NA	intron (NM_002288, intron 4 of 4)	intron (NM_002288, intron 4 of 4)	6658	NM_021270	3904	Hs.43803	NM_002288	HPRD:04293	LAIR2	CD306	leukocyte-associated immunoglobulin-like receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_85940	chr6	24083525	24083663	+	6.67835	NA	Intergenic	L1PA3|LINE|L1	-42820	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_74280	chr4	7892441	7892620	+	6.67835	NA	intron (NM_198595, intron 1 of 16)	L1ME1|LINE|L1	49123	NM_198595	60312	Hs.529369	NM_021638	HPRD:09747	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101163	chr8	134707621	134707817	+	6.67835	NA	Intergenic	MIR3|SINE|MIR	81876	NR_125422	101927798	Hs.615036	NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
19-PTNLD28-TUMOR_peak_41177	chr17	35826661	35826874	+	6.67835	NA	intron (NM_001488, intron 11 of 15)	intron (NM_001488, intron 11 of 15)	-23184	NM_007026	11072	Hs.91448	NM_007026	HPRD:09427	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
19-PTNLD28-TUMOR_peak_91763	chr7	28458067	28458171	+	6.67835	NA	intron (NM_182898, intron 1 of 10)	intron (NM_182898, intron 1 of 10)	5975	NM_182898	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_55754	chr2	132110932	132111282	+	6.67835	NA	Intergenic	CpG	10624	NM_001077637	150786	Hs.645670	NM_001077637		WTH3DI	-	RAB6C-like	protein-coding
19-PTNLD28-TUMOR_peak_35537	chr15	101912543	101912642	+	6.67835	NA	intron (NM_001291309, intron 9 of 19)	intron (NM_001291309, intron 9 of 19)	-63083	NR_045387	100507472	Hs.498494	NR_045387		LOC100507472	-	uncharacterized LOC100507472	ncRNA
19-PTNLD28-TUMOR_peak_109523	chrX	133738428	133738525	+	6.67835	NA	intron (NM_021796, intron 1 of 2)	intron (NM_021796, intron 1 of 2)	54037	NM_021796	10761	Hs.496811	NM_021796	HPRD:02245	PLAC1	CT92|OOSP2L	placenta-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_73108	chr3	188978735	188978937	+	6.67835	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-20453	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_48376	chr19	29331943	29332385	+	6.67835	NA	Intergenic	Intergenic	-113563	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52258	chr2	39455206	39455479	+	6.67835	NA	intron (NM_001009565, intron 1 of 7)	intron (NM_001009565, intron 1 of 7)	1331	NM_001009565	344387	Hs.403201	NM_001009565	HPRD:16698	CDKL4	-	cyclin-dependent kinase-like 4	protein-coding
19-PTNLD28-TUMOR_peak_21723	chr11	122215157	122215286	+	6.67835	NA	Intergenic	Intergenic	-141451	NR_024430	399959	Hs.44098	NR_024430	ENSG00000255248	MIR100HG	AGD1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_6490	chr1	147645500	147645598	+	6.67835	NA	intron (NR_102404, intron 17 of 18).2	MLT1H1|LTR|ERVL-MaLR	-21080	NR_046188	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_72279	chr3	170444995	170445140	+	6.67835	NA	Intergenic	L2a|LINE|L2	-141204	NM_020949	57709	Hs.596660	NM_020949	HPRD:17222	SLC7A14	PPP1R142	solute carrier family 7, member 14	protein-coding
19-PTNLD28-TUMOR_peak_102633	chr9	32378633	32378792	+	6.67835	NA	Intergenic	Intergenic	-5889	NM_002197	48	Hs.567229	NM_002197	HPRD:00013	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_63823	chr21	44548324	44548439	+	6.67835	NA	Intergenic	Intergenic	-20693	NM_001025204	7307	Hs.365116	NM_006758	HPRD:01871	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
19-PTNLD28-TUMOR_peak_73176	chr3	190041151	190041301	+	6.67822	NA	promoter-TSS (NM_021101)	promoter-TSS (NM_021101)	-991	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_100413	chr8	121822964	121823167	+	6.67777	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	1244	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_23102	chr12	12718381	12718544	+	6.67510	NA	Intergenic	SVA_D|Other|Other	-3014	NM_030640	80824	Hs.536535	NM_030640		DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
19-PTNLD28-TUMOR_peak_27938	chr13	40980922	40981109	+	6.67450	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	74128	NR_024507	646982	Hs.287664	NR_024505		LINC00598	TTL	long intergenic non-protein coding RNA 598	ncRNA
19-PTNLD28-TUMOR_peak_27953	chr13	41309085	41309191	+	6.67450	NA	intron (NM_005830, intron 6 of 6)	L1PA2|LINE|L1	-7127	NR_031723	100313896		NR_031723	miRBase:MI0008190	MIR320D1	MIR320D-1|MIRN320D1	microRNA 320d-1	ncRNA
19-PTNLD28-TUMOR_peak_50138	chr19	53102646	53102737	+	6.67450	NA	non-coding (NR_023311, exon 3 of 3)	non-coding (NR_023311, exon 3 of 3)	2754	NR_023311	7696	Hs.373648	NM_003438		ZNF137P	ZNF137|pHZ-30	zinc finger protein 137, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_95115	chr7	128101567	128101697	+	6.67450	NA	Intergenic	Intergenic	5748	NM_013332	29923	Hs.706124	NM_013332	HPRD:17105	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet-associated	protein-coding
19-PTNLD28-TUMOR_peak_44688	chr18	12947591	12947679	+	6.67450	NA	promoter-TSS (NM_031216)	promoter-TSS (NM_031216)	-348	NM_031216	81929	Hs.301048	NM_031216	HPRD:15319	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_649	chr1	9919458	9919756	+	6.67450	NA	intron (NM_001012329, intron 4 of 4)	intron (NM_001012329, intron 4 of 4)	-35057	NM_014944	22883	Hs.29665	NM_014944	HPRD:10837	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
19-PTNLD28-TUMOR_peak_59523	chr20	2805737	2805836	+	6.67450	NA	Intergenic	SVA_E|Other|Other	8810	NM_001167670	100288797	Hs.664180	NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
19-PTNLD28-TUMOR_peak_101376	chr8	141116181	141116324	+	6.67450	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	351609	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_76894	chr4	122872519	122872625	+	6.67450	NA	intron (NM_001130698, intron 1 of 11)	CpG	337	NM_001130698	7222	Hs.150981	NM_003305	HPRD:15999	TRPC3	TRP3	transient receptor potential cation channel, subfamily C, member 3	protein-coding
19-PTNLD28-TUMOR_peak_28216	chr13	49672971	49673149	+	6.67450	NA	intron (NR_103528, intron 3 of 25)	intron (NR_103528, intron 3 of 25)	-11379	NM_014923	22862	Hs.508010	NM_014923	HPRD:13548	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_54670	chr2	106043369	106043534	+	6.67450	NA	intron (NM_201557, intron 1 of 5)	intron (NM_201557, intron 1 of 5)	11779	NM_201557	2274	Hs.443687	NM_001450	HPRD:04026	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
19-PTNLD28-TUMOR_peak_56525	chr2	159651774	159652046	+	6.67450	NA	promoter-TSS (NM_001017920)	promoter-TSS (NM_001017920)	81	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_19490	chr11	67169486	67169608	+	6.67450	NA	promoter-TSS (NM_002708)	promoter-TSS (NM_002708)	-171	NM_206873	5499	Hs.183994	NM_002708	HPRD:15942	PPP1CA	PP-1A|PP1A|PP1alpha|PPP1A	protein phosphatase 1, catalytic subunit, alpha isozyme	protein-coding
19-PTNLD28-TUMOR_peak_56100	chr2	142888826	142888945	+	6.67450	NA	5' UTR (NM_018557, exon 1 of 91)	5' UTR (NM_018557, exon 1 of 91)	385	NM_018557	53353	Hs.656461	NM_018557	HPRD:16383	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_95786	chr7	139499552	139499644	+	6.67340	NA	intron (NM_001166254, intron 3 of 14)	intron (NM_001166254, intron 3 of 14)	21551	NM_001166254	6916	Hs.520757	NM_001061	HPRD:02035	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1 (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_25918	chr12	104532173	104532313	+	6.67340	NA	promoter-TSS (NM_006166)	promoter-TSS (NM_006166)	-203	NM_006166	4801	Hs.84928	NM_006166	HPRD:01794	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y, beta	protein-coding
19-PTNLD28-TUMOR_peak_54303	chr2	97173843	97173968	+	6.67163	NA	promoter-TSS (NR_104346)	promoter-TSS (NR_104346)	-59	NR_104346	93082	Hs.149219	NM_001080535	HPRD:14296	NEURL3	LINCR	neuralized E3 ubiquitin protein ligase 3	protein-coding
19-PTNLD28-TUMOR_peak_39764	chr17	3795387	3795529	+	6.67163	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	879	NM_172207	84254	Hs.8417	NM_032294	HPRD:13000	CAMKK1	CAMKKA	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_35409	chr15	98865266	98865407	+	6.67015	NA	Intergenic	Intergenic	192275	NM_182562	283777	Hs.668070	NM_182562	HPRD:08265	FAM169B	-	family with sequence similarity 169, member B	protein-coding
19-PTNLD28-TUMOR_peak_18094	chr11	36276470	36276558	+	6.67015	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	34485	NM_001101653	29099	Hs.279836	NM_014186		COMMD9	-	COMM domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_89376	chr6	126102207	126102427	+	6.67015	NA	promoter-TSS (NM_001199619)	promoter-TSS (NM_001199619)	10	NM_001199620	135112	Hs.171426	NM_181782	HPRD:14814	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
19-PTNLD28-TUMOR_peak_67889	chr3	45815288	45815411	+	6.67015	NA	intron (NM_020208, intron 4 of 10)	intron (NM_020208, intron 4 of 10)	22686	NM_022405	54716	Hs.413095	NM_020208	HPRD:16128	SLC6A20	SIT1|XT3|Xtrp3	solute carrier family 6 (proline IMINO transporter), member 20	protein-coding
19-PTNLD28-TUMOR_peak_95809	chr7	139911935	139912091	+	6.67015	NA	Intergenic	Intergenic	34952	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_11890	chr10	6764647	6764825	+	6.67015	NA	Intergenic	Intergenic	56406	NR_108074	100652997	Hs.255086	NR_108074		LINC00706	-	long intergenic non-protein coding RNA 706	ncRNA
19-PTNLD28-TUMOR_peak_20068	chr11	75161340	75161534	+	6.67015	NA	intron (NM_030792, intron 6 of 16)	intron (NM_030792, intron 6 of 16)	-19763	NM_001039548	283212	Hs.292451	NM_173583	HPRD:08747	KLHL35	-	kelch-like family member 35	protein-coding
19-PTNLD28-TUMOR_peak_18427	chr11	46922058	46922177	+	6.67015	NA	intron (NM_002334, intron 2 of 37)	AluSz6|SINE|Alu	18056	NM_002334	4038	Hs.4930	NM_002334	HPRD:18517	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
19-PTNLD28-TUMOR_peak_34694	chr15	78441466	78441566	+	6.67015	NA	promoter-TSS (NM_005530)	promoter-TSS (NM_005530)	-203	NM_005530	3419	Hs.591110	NM_005530		IDH3A	-	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding
19-PTNLD28-TUMOR_peak_109431	chrX	129216341	129216557	+	6.67015	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	28026	NM_001421	2000	Hs.271940	NM_001421	HPRD:06499	ELF4	ELFR|MEF	E74-like factor 4 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_78200	chr4	183783902	183783997	+	6.66730	NA	Intergenic	Intergenic	54681	NM_001921	1635	Hs.183850	NM_001921	HPRD:09623	DCTD	-	dCMP deaminase	protein-coding
19-PTNLD28-TUMOR_peak_28202	chr13	49366029	49366203	+	6.66720	NA	Intergenic	Intergenic	85165	NM_020377	57105	Hs.253706	NM_020377	HPRD:09293	CYSLTR2	CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_36166	chr16	9298333	9298421	+	6.66720	NA	Intergenic	LTR16A1|LTR|ERVL	-30397	NR_036166	100422920		NR_036166	miRBase:MI0014244	MIR548X	-	microRNA 548x	ncRNA
19-PTNLD28-TUMOR_peak_68773	chr3	64253614	64253898	+	6.66720	NA	Intergenic	CpG	-42625	NM_198859	166336	Hs.148105	NM_198859	HPRD:16342	PRICKLE2	EPM5	prickle homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_28359	chr13	55311239	55311426	+	6.66720	NA	Intergenic	LTR12C|LTR|ERV1	-425149	NR_031628	100302187		NR_031628		MIR1297	MIRN1297|hsa-mir-1297	microRNA 1297	ncRNA
19-PTNLD28-TUMOR_peak_81312	chr5	98680852	98680950	+	6.66720	NA	Intergenic	L1PA3|LINE|L1	-188793	NR_110562	102724855	Hs.519477	NR_110562		CTD-2151A2.1	-	uncharacterized LOC102724855	ncRNA
19-PTNLD28-TUMOR_peak_14156	chr10	72626797	72627062	+	6.66720	NA	intron (NM_003901, intron 7 of 14)	intron (NM_003901, intron 7 of 14)	21082	NM_001289797	5092	Hs.3192	NM_000281	HPRD:00523	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha	protein-coding
19-PTNLD28-TUMOR_peak_64716	chr22	24263862	24263950	+	6.66720	NA	Intergenic	AluJb|SINE|Alu	-22789	NR_038911	284889	Hs.632772	NR_038911		MIF-AS1	-	MIF antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62175	chr20	54919012	54919140	+	6.66720	NA	Intergenic	CpG	-14907	NM_080821	116151	Hs.143736	NM_080821	HPRD:12737	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210, member B	protein-coding
19-PTNLD28-TUMOR_peak_61392	chr20	44739995	44740214	+	6.66720	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6802	NM_001250	958	Hs.472860	NM_001250	HPRD:00178	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule, TNF receptor superfamily member 5	protein-coding
19-PTNLD28-TUMOR_peak_58170	chr2	211230194	211230393	+	6.66720	NA	intron (NR_110606, intron 1 of 4)	LTR10A|LTR|ERV1	40857	NR_110604	102724820	Hs.659232	NR_110604		LANCL1-AS1	LANCLOT	LANCL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14870	chr10	92617707	92617795	+	6.66720	NA	promoter-TSS (NM_019859)	promoter-TSS (NM_019859)	-80	NM_019859	3363	Hs.73739	NM_000872	HPRD:01639	HTR7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled	protein-coding
19-PTNLD28-TUMOR_peak_85385	chr6	11869926	11870206	+	6.66720	NA	Intergenic	MIR|SINE|MIR	-90786	NM_032744	84830	Hs.126409	NM_032744	HPRD:12836	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
19-PTNLD28-TUMOR_peak_16972	chr11	8615811	8615937	+	6.66720	NA	promoter-TSS (NM_001289059)	promoter-TSS (NM_001289059)	-38	NM_001289058	65975	Hs.501833	NM_030906	HPRD:09642	STK33	-	serine/threonine kinase 33	protein-coding
19-PTNLD28-TUMOR_peak_48552	chr19	33726350	33726455	+	6.66720	NA	Intergenic	Intergenic	-9646	NM_019849	56301	Hs.58679	NM_019849	HPRD:12137	SLC7A10	HASC-1|asc-1	solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10	protein-coding
19-PTNLD28-TUMOR_peak_109792	chrX	150872025	150872123	+	6.66720	NA	Intergenic	Intergenic	5295	NR_033262	79057	Hs.592236	NM_024082	HPRD:06742	PRRG3	PRGP3|TMG3	proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_45952	chr18	56329461	56329563	+	6.66720	NA	Intergenic	MER5B|DNA|hAT-Charlie	-9106	NM_006785	10892	Hs.601217	NM_006785	HPRD:06892	MALT1	IMD12|MLT|MLT1	mucosa associated lymphoid tissue lymphoma translocation gene 1	protein-coding
19-PTNLD28-TUMOR_peak_106381	chr9	132459512	132459812	+	6.66720	NA	intron (NM_016307, intron 1 of 3)	CpG	31742	NM_016307	51450	Hs.660115	NM_016307	HPRD:05244	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_105739	chr9	120497251	120497429	+	6.66720	NA	Intergenic	L2c|LINE|L2	30887	NM_138554	7099	Hs.174312	NM_003266	HPRD:04325	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_40348	chr17	16894775	16894920	+	6.66720	NA	Intergenic	Intergenic	-19445	NM_012452	23495	Hs.158341	NM_012452	HPRD:05365	TNFRSF13B	CD267|CVID|CVID2|RYZN|TACI|TNFRSF14B	tumor necrosis factor receptor superfamily, member 13B	protein-coding
19-PTNLD28-TUMOR_peak_90299	chr6	159113930	159114083	+	6.66720	NA	intron (NM_001242395, intron 6 of 15)	intron (NM_001242395, intron 6 of 15)	42960	NM_001242394	94120	Hs.436977	NM_001009991	HPRD:15462	SYTL3	SLP3	synaptotagmin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_66321	chr3	6314184	6314272	+	6.66720	NA	Intergenic	L1PA3|LINE|L1	532908	NR_110123	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_66968	chr3	16470763	16470851	+	6.66720	NA	intron (NM_015150, intron 3 of 9)	intron (NM_015150, intron 3 of 9)	84415	NM_015150	23180	Hs.98910	NM_015150	HPRD:17950	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
19-PTNLD28-TUMOR_peak_79573	chr5	38551659	38551747	+	6.66720	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	5045	NM_001127671	3977	Hs.133421	NM_002310	HPRD:01048	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_36022	chr16	4567928	4568052	+	6.66720	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	20481	NM_001199054	29965	Hs.654653	NM_013399	HPRD:12676	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death-inducing p53 target 1	protein-coding
19-PTNLD28-TUMOR_peak_45779	chr18	48856384	48856526	+	6.66720	NA	Intergenic	AluSx3|SINE|Alu	-61957	NR_040075	100287225	Hs.448920	NR_040074	ENSG00000227115	LOC100287225	-	uncharacterized LOC100287225	ncRNA
19-PTNLD28-TUMOR_peak_93846	chr7	89767958	89768311	+	6.66720	NA	intron (NR_110029, intron 2 of 2)	intron (NR_110029, intron 2 of 2)	-15555	NM_012449	26872	Hs.61635	NM_012449	HPRD:05106	STEAP1	PRSS24|STEAP	six transmembrane epithelial antigen of the prostate 1	protein-coding
19-PTNLD28-TUMOR_peak_25000	chr12	65019347	65019689	+	6.66720	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-3133	NR_037515	100500856		NR_037515		MIR548Z	-	microRNA 548z	ncRNA
19-PTNLD28-TUMOR_peak_23593	chr12	30353864	30353952	+	6.66720	NA	Intergenic	Intergenic	-416216	NM_175861	83857	Hs.401954	NM_175861	HPRD:12472	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_45053	chr18	26092490	26092599	+	6.66720	NA	Intergenic	L2c|LINE|L2	-335099	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_106192	chr9	130503113	130503303	+	6.66689	NA	intron (NM_001252334, intron 9 of 11)	AluSc8|SINE|Alu	-5580	NM_001252018	27433	Hs.444106	NM_130459	HPRD:16271	TOR2A	TORP1	torsin family 2, member A	protein-coding
19-PTNLD28-TUMOR_peak_87420	chr6	41438678	41438827	+	6.66689	NA	Intergenic	Intergenic	-31430	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_82510	chr5	138630097	138630239	+	6.66689	NA	intron (NM_001194956, intron 1 of 13)	CpG	729	NM_001194956	9782	Hs.268939	NM_018834	HPRD:05270	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
19-PTNLD28-TUMOR_peak_43218	chr17	70456877	70457000	+	6.66689	NA	intron (NR_036488, intron 1 of 3)	MER58A|DNA|hAT-Charlie	132005	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_2189	chr1	33431071	33431410	+	6.66441	NA	promoter-TSS (NM_001127361)	promoter-TSS (NM_001127361)	-826	NM_001127361	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_94526	chr7	102179863	102180040	+	6.66403	NA	intron (NM_001097615, intron 8 of 8)	intron (NM_001097615, intron 8 of 8)	-11728	NM_001031618	441273	Hs.656428	NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
19-PTNLD28-TUMOR_peak_81450	chr5	107007617	107007726	+	6.65895	NA	Intergenic	CpG-20916	-1075	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_46632	chr19	2060947	2061126	+	6.65895	NA	Intergenic	Intergenic	-9793	NM_017572	2872	Hs.515032	NM_017572	HPRD:05459	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_47711	chr19	15359858	15359954	+	6.65733	NA	3' UTR (NM_014299, exon 12 of 12)	3' UTR (NM_014299, exon 12 of 12)	-16048	NM_001142886	79852	Hs.156457	NM_024794	HPRD:12410	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
19-PTNLD28-TUMOR_peak_1099	chr1	16900646	16900741	+	6.65733	NA	intron (NM_017940, intron 21 of 28)	intron (NM_017940, intron 21 of 28)	25284	NR_037446	100500876		NR_037446	miRBase:MI0016076	MIR3675	-	microRNA 3675	ncRNA
19-PTNLD28-TUMOR_peak_56685	chr2	162930857	162930945	+	6.65576	NA	5' UTR (NM_001935, exon 1 of 26)	5' UTR (NM_001935, exon 1 of 26)	151	NM_001935	1803	Hs.368912	NM_001935	HPRD:02187	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl-peptidase 4	protein-coding
19-PTNLD28-TUMOR_peak_49408	chr19	46031676	46031767	+	6.65576	NA	3' UTR (NM_001017989, exon 2 of 2)	3' UTR (NM_001017989, exon 2 of 2)	21033	NM_003370	7408	Hs.515469	NM_003370	HPRD:03415	VASP	-	vasodilator-stimulated phosphoprotein	protein-coding
19-PTNLD28-TUMOR_peak_25788	chr12	100535825	100535994	+	6.65576	NA	intron (NM_001006947, intron 1 of 12)	intron (NM_001006947, intron 1 of 12)	733	NM_001006947	23074	Hs.620701	NM_015054	HPRD:13811	UHRF1BP1L	SHIP164	UHRF1 binding protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_106583	chr9	136213931	136214080	+	6.65576	NA	intron (NM_181491, intron 1 of 3)	intron (NM_181491, intron 1 of 3)	1006	NM_133640	6837	Hs.78354	NM_006752	HPRD:01713	MED22	MED24|SURF5|surf-5	mediator complex subunit 22	protein-coding
19-PTNLD28-TUMOR_peak_74743	chr4	22504931	22505021	+	6.65576	NA	intron (NM_145290, intron 1 of 18)	intron (NM_145290, intron 1 of 18)	12701	NM_145290	166647	Hs.99195	NM_145290	HPRD:11011	GPR125	PGR21|TEM5L	G protein-coupled receptor 125	protein-coding
19-PTNLD28-TUMOR_peak_52425	chr2	43534308	43534441	+	6.65576	NA	intron (NM_022065, intron 31 of 37)	L1MB7|LINE|L1	80024	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_104586	chr9	94712527	94712652	+	6.65576	NA	promoter-TSS (NM_004560)	promoter-TSS (NM_004560)	-145	NM_004560	4920	Hs.98255	NM_004560	HPRD:03822	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_60062	chr20	19192307	19192515	+	6.65383	NA	promoter-TSS (NM_020689)	promoter-TSS (NM_020689)	-879	NM_020689	57419	Hs.654790	NM_020689	HPRD:15352	SLC24A3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_8589	chr1	180991125	180991371	+	6.65383	NA	intron (NM_005819, intron 1 of 7)	CpG	1009	NM_005819	10228	Hs.518417	NM_005819	HPRD:07231	STX6	-	syntaxin 6	protein-coding
19-PTNLD28-TUMOR_peak_39047	chr16	83987793	83987883	+	6.65233	NA	intron (NM_182981, intron 1 of 5)	intron (NM_182981, intron 1 of 5)	1011	NM_182981	29948	Hs.128055	NM_013370	HPRD:06412	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_60669	chr20	33412645	33412843	+	6.65067	NA	intron (NM_001242539, intron 1 of 13)	intron (NM_001242539, intron 1 of 13)	689	NM_001242539	23054	Hs.368971	NM_014071	HPRD:05599	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
19-PTNLD28-TUMOR_peak_70705	chr3	129118218	129118349	+	6.65067	NA	promoter-TSS (NR_003111)	promoter-TSS (NR_003111)	-1	NR_003111	132241	Hs.477537	NR_003111	ENSG00000251474	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_85271	chr6	10413200	10413360	+	6.65030	NA	promoter-TSS (NM_001032280)	promoter-TSS (NM_001032280)	-673	NM_001032280	7020	Hs.519880	NM_003220	HPRD:00128	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	protein-coding
19-PTNLD28-TUMOR_peak_63722	chr21	43431146	43431235	+	6.65020	NA	promoter-TSS (NM_001098403)	promoter-TSS (NM_001098403)	-694	NM_020727	49854	Hs.434947	NM_020727	HPRD:10328	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
19-PTNLD28-TUMOR_peak_9493	chr1	204096938	204097047	+	6.65020	NA	TTS (NM_005686)	TTS (NM_005686)	-13544	NR_123739	101929441	Hs.736889	NR_123739		LOC101929441	-	uncharacterized LOC101929441	ncRNA
19-PTNLD28-TUMOR_peak_22786	chr12	6715517	6715658	+	6.65020	NA	promoter-TSS (NM_001297553)	promoter-TSS (NM_001297553)	30	NM_001297553	1108	Hs.162233	NM_001273	HPRD:04472	CHD4	CHD-4|Mi-2b|Mi2-BETA	chromodomain helicase DNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_90457	chr6	165424837	165424943	+	6.64353	NA	Intergenic	L2b|LINE|L2	298221	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_64882	chr22	27068594	27068683	+	6.64353	NA	promoter-TSS (NR_110543)	promoter-TSS (NR_110543)	-168	NR_110543	102724827	Hs.642767	NR_110543		MIATNB	-	MIAT neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_108087	chrX	44731658	44731823	+	6.64353	NA	promoter-TSS (NM_001291415)	promoter-TSS (NM_001291415)	-681	NR_111960	7403	Hs.522616	NM_021140	HPRD:02131	KDM6A	KABUK2|UTX|bA386N14.2	lysine (K)-specific demethylase 6A	protein-coding
19-PTNLD28-TUMOR_peak_32157	chr14	103241351	103241439	+	6.64353	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2421	NM_001199427	7187	Hs.510528	NM_003300	HPRD:03539	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1	TNF receptor-associated factor 3	protein-coding
19-PTNLD28-TUMOR_peak_7438	chr1	157948474	157948598	+	6.64353	NA	Intergenic	Intergenic	-14527	NM_001286349	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_31794	chr14	93650759	93650906	+	6.64353	NA	promoter-TSS (NM_001098621)	promoter-TSS (NM_001098621)	417	NM_022151	64112	Hs.24719	NM_022151	HPRD:17580	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
19-PTNLD28-TUMOR_peak_61926	chr20	50159177	50159272	+	6.64353	NA	promoter-TSS (NM_012340)	promoter-TSS (NM_012340)	34	NM_001258297	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_47901	chr19	17493770	17493864	+	6.64353	NA	Intergenic	AluY|SINE|Alu	-5680	NM_031310	83483	Hs.107125	NM_031310	HPRD:09626	PLVAP	FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
19-PTNLD28-TUMOR_peak_48595	chr19	34746029	34746176	+	6.64353	NA	intron (NM_014686, intron 1 of 13)	CpG	646	NM_014686	9710	Hs.330073	NM_014686	HPRD:11077	KIAA0355	-	KIAA0355	protein-coding
19-PTNLD28-TUMOR_peak_19216	chr11	64877891	64878064	+	6.64298	NA	exon (NM_013265, exon 8 of 10)	exon (NM_013265, exon 8 of 10)	-1349	NR_102367	7108	Hs.31130	NM_003273	HPRD:04564	TM7SF2	ANG1|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
19-PTNLD28-TUMOR_peak_95532	chr7	134856152	134856330	+	6.63835	NA	promoter-TSS (NM_001243754)	promoter-TSS (NM_001243754)	-663	NM_001243751	78996	Hs.732134	NM_024033	HPRD:08333	C7orf49	MRI	chromosome 7 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_13870	chr10	64368271	64368474	+	6.63784	NA	intron (NM_199452, intron 1 of 6)	L1PA2|LINE|L1	88165	NM_199452	22891	Hs.22653	NM_014951	HPRD:06380	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
19-PTNLD28-TUMOR_peak_75039	chr4	40494964	40495076	+	6.63784	NA	intron (NM_001098634, intron 2 of 6)	intron (NM_001098634, intron 2 of 6)	9116	NR_039966	100616274		NR_039966	miRBase:MI0017450	MIR4802	-	microRNA 4802	ncRNA
19-PTNLD28-TUMOR_peak_52930	chr2	60311228	60311353	+	6.63784	NA	Intergenic	L1PA2|LINE|L1	303290	NR_039631	100616473		NR_039631	miRBase:MI0016772	MIR4432	-	microRNA 4432	ncRNA
19-PTNLD28-TUMOR_peak_53991	chr2	88480762	88480957	+	6.63784	NA	intron (NM_001244676, intron 5 of 8)	(TC)n|Simple_repeat|Simple_repeat	8201	NM_018271	55258	Hs.739080	NM_018271	HPRD:07715	THNSL2	SOFAT|THS2|TSH2	threonine synthase-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_19633	chr11	68905893	68906028	+	6.63784	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	33070	NR_104161	338694	Hs.564235	NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
19-PTNLD28-TUMOR_peak_64864	chr22	26758529	26758662	+	6.63784	NA	intron (NM_001184777, intron 12 of 14)	L2c|LINE|L2	-66685	NM_020437	57168	Hs.567547	NM_020437	HPRD:14255	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_3656	chr1	55013693	55013836	+	6.63784	NA	promoter-TSS (NM_147161)	promoter-TSS (NM_147161)	-43	NM_015547	26027	Hs.745173	NM_015547	HPRD:07075	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
19-PTNLD28-TUMOR_peak_55495	chr2	124386319	124386548	+	6.63784	NA	Intergenic	L1PA3|LINE|L1	-396431	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_91964	chr7	34100895	34101074	+	6.63784	NA	intron (NM_133468, intron 11 of 15)	intron (NM_133468, intron 11 of 15)	156461	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_49980	chr19	51149738	51149903	+	6.63784	NA	Intergenic	Intergenic	-2882	NM_001195076	342918	Hs.531650	NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
19-PTNLD28-TUMOR_peak_105532	chr9	116333491	116333646	+	6.63784	NA	intron (NM_134427, intron 1 of 4)	L1ME3A|LINE|L1	6334	NM_134427	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_38465	chr16	69131500	69131612	+	6.63784	NA	Intergenic	Intergenic	-7911	NM_001199280	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_3149	chr1	45688777	45688880	+	6.63784	NA	Intergenic	SVA_E|Other|Other	-16578	NM_020883	57643	Hs.656613	NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger, SWIM-type containing 5	protein-coding
19-PTNLD28-TUMOR_peak_477	chr1	8002327	8002604	+	6.63784	NA	intron (NM_001561, intron 1 of 8)	CpG	760	NM_001561	3604	Hs.86447	NM_001561		TNFRSF9	4-1BB|CD137|CDw137|ILA	tumor necrosis factor receptor superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_58287	chr2	217091436	217091621	+	6.63784	NA	Intergenic	SVA_E|Other|Other	9916	NR_037701	150967	Hs.56876	NM_001199924	ENSG00000260804	PKI55	-	DKFZp434H1419	ncRNA
19-PTNLD28-TUMOR_peak_72410	chr3	172853017	172853127	+	6.63510	NA	intron (NM_031955, intron 1 of 10)	L1ME3A|LINE|L1	5986	NM_031955	83893	Hs.444236	NM_031955	HPRD:11408	SPATA16	NYD-SP12|SPGF6	spermatogenesis associated 16	protein-coding
19-PTNLD28-TUMOR_peak_54317	chr2	97353208	97353352	+	6.63510	NA	intron (NM_001293083, intron 23 of 52)	MIRb|SINE|MIR	44806	NM_001293083	90342	Hs.534025	NM_001077400		FER1L5	-	fer-1-like family member 5	protein-coding
19-PTNLD28-TUMOR_peak_86473	chr6	30509588	30509678	+	6.63510	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-14853	NM_001077497	80742	Hs.118354	NM_025263		PRR3	CAT56	proline rich 3	protein-coding
19-PTNLD28-TUMOR_peak_23088	chr12	12487422	12487536	+	6.63510	NA	intron (NM_018050, intron 3 of 3)	intron (NM_018050, intron 3 of 3)	15690	NM_018050	54682	Hs.591145	NM_018050	HPRD:10067	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30514	chr14	58045283	58045444	+	6.63510	NA	intron (NM_001206920, intron 4 of 7)	intron (NM_001206920, intron 4 of 7)	-84782	NM_001283058	55195	Hs.659706	NM_018168	HPRD:12628	C14orf105	-	chromosome 14 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_101976	chr9	2722786	2722912	+	6.63510	NA	intron (NM_133497, intron 1 of 1)	MLT1H2|LTR|ERVL-MaLR	5323	NM_133497	169522	Hs.622675	NM_133497	HPRD:12126	KCNV2	KV11.1|Kv8.2|RCD3B	potassium channel, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_45254	chr18	34287490	34287578	+	6.63309	NA	intron (NM_001281739, intron 13 of 23)	intron (NM_001281739, intron 13 of 23)	-121546	NM_020776	57536	Hs.4045	NM_020776	HPRD:17211	KIAA1328	-	KIAA1328	protein-coding
19-PTNLD28-TUMOR_peak_30997	chr14	69406724	69407006	+	6.63096	NA	intron (NM_001102, intron 1 of 20)	intron (NM_001102, intron 1 of 20)	39218	NM_001130004	87	Hs.509765	NM_001102	HPRD:00020	ACTN1	BDPLT15	actinin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_19521	chr11	67437972	67438387	+	6.63096	NA	intron (NM_001031615, intron 1 of 9)	intron (NM_001031615, intron 1 of 9)	3923	NM_000695	222	Hs.87539	NM_000695	HPRD:03559	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family, member B2	protein-coding
19-PTNLD28-TUMOR_peak_11263	chr1	240256131	240256316	+	6.62827	NA	exon (NM_020066, exon 1 of 18)	exon (NM_020066, exon 1 of 18)	1038	NM_020066	56776	Hs.24889	NM_020066	HPRD:10449	FMN2	-	formin 2	protein-coding
19-PTNLD28-TUMOR_peak_16397	chr10	135192393	135192492	+	6.62827	NA	promoter-TSS (NR_109765)	promoter-TSS (NR_109765)	-299	NM_152911	196743	Hs.501578	NM_152911	HPRD:10136	PAOX	PAO	polyamine oxidase (exo-N4-amino)	protein-coding
19-PTNLD28-TUMOR_peak_68973	chr3	71632809	71633036	+	6.62827	NA	promoter-TSS (NM_001244808)	promoter-TSS (NM_001244808)	-18	NM_001244808	27086	Hs.59368	NM_032682	HPRD:18518	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
19-PTNLD28-TUMOR_peak_79509	chr5	36522703	36522909	+	6.62827	NA	Intergenic	Intergenic	-83651	NM_001166696	6507	Hs.481918	NM_004172	HPRD:02523	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_1824	chr1	28281738	28281879	+	6.62818	NA	intron (NM_014474, intron 5 of 7)	intron (NM_014474, intron 5 of 7)	-4696	NM_018053	55113	Hs.55024	NM_018053	HPRD:07661	XKR8	XRG8|hXkr8	XK, Kell blood group complex subunit-related family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_47472	chr19	13023895	13024209	+	6.62818	NA	intron (NM_001105578, intron 2 of 5)	intron (NM_001105578, intron 2 of 5)	6034	NM_001105578	256126	Hs.655173	NM_001105578		SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
19-PTNLD28-TUMOR_peak_72543	chr3	178201622	178201788	+	6.62818	NA	Intergenic	Intergenic	-52381	NM_181361	10242	Hs.478368	NM_005832	HPRD:05557	KCNMB2	-	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_93974	chr7	93543843	93544179	+	6.62818	NA	Intergenic	Intergenic	-7005	NM_004126	2791	Hs.83381	NM_004126		GNG11	GNGT11	guanine nucleotide binding protein (G protein), gamma 11	protein-coding
19-PTNLD28-TUMOR_peak_44179	chr17_gl000205_random	111243	111515	+	6.62818	NA	Intergenic	GSATII|Satellite|centr	-5244	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22821	chr12	6981665	6981759	+	6.62539	NA	exon (NM_032641, exon 2 of 3)	exon (NM_032641, exon 2 of 3)	737	NM_001146316	84727	Hs.479856	NM_032641	HPRD:13610	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
19-PTNLD28-TUMOR_peak_42891	chr17	62503663	62503758	+	6.62244	NA	intron (NM_138363, intron 1 of 19)	intron (NM_138363, intron 1 of 19)	552	NM_138363	90799	Hs.569713	NM_138363	HPRD:11279	CEP95	CCDC45	centrosomal protein 95kDa	protein-coding
19-PTNLD28-TUMOR_peak_2814	chr1	41707458	41707554	+	6.62139	NA	intron (NM_001172218, intron 1 of 15)	CpG	309	NM_001172218	22955	Hs.571874	NM_012236	HPRD:11540	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_37361	chr16	31487947	31488128	+	6.62121	NA	intron (NM_001042454, intron 9 of 10)	CpG-9157	3511	NM_015927	7041	Hs.513530	NM_015927	HPRD:03831	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_8971	chr1	192455379	192455489	+	6.62121	NA	Intergenic	Intergenic	-89423	NM_002922	5996	Hs.75256	NM_002922	HPRD:15968	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_42534	chr17	56013573	56013686	+	6.62121	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	19055	NM_001271875	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_78837	chr5	9546128	9546240	+	6.62121	NA	promoter-TSS (NM_003966)	promoter-TSS (NM_003966)	49	NM_003966	9037	Hs.27621	NM_003966	HPRD:10219	SEMA5A	SEMAF|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
19-PTNLD28-TUMOR_peak_83684	chr5	162998860	162999142	+	6.61901	NA	Intergenic	Intergenic	66467	NM_013283	27430	Hs.54642	NM_013283	HPRD:05701	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase II, beta	protein-coding
19-PTNLD28-TUMOR_peak_10791	chr1	230595420	230595549	+	6.61901	NA	Intergenic	Intergenic	-33810	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_3788	chr1	58621153	58621466	+	6.61901	NA	intron (NM_021080, intron 1 of 16)	LTR50|LTR|ERVL	94902	NM_021080	1600	Hs.477370	NM_021080	HPRD:04582	DAB1	-	Dab, reelin signal transducer, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_5170	chr1	100532847	100532935	+	6.61901	NA	intron (NM_033055, intron 5 of 11)	AluSx3|SINE|Alu	29102	NM_033055	64645	Hs.124156	NM_033055	HPRD:11022	HIAT1	-	hippocampus abundant transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_106847	chr9	140236392	140236524	+	6.61901	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-39755	NM_001004354	441478	Hs.535075	NM_001004354	HPRD:17564	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_41818	chr17	43489216	43489374	+	6.61901	NA	intron (NM_001282290, intron 1 of 16)	intron (NM_001282290, intron 1 of 16)	13717	NM_199282	201176	Hs.205326	NM_174919	HPRD:12477	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
19-PTNLD28-TUMOR_peak_104527	chr9	93340598	93340694	+	6.61901	NA	intron (NR_034157, intron 1 of 5)	intron (NR_034157, intron 1 of 5)	4382	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
19-PTNLD28-TUMOR_peak_38762	chr16	75410566	75410694	+	6.61901	NA	intron (NM_006324, intron 5 of 6)	MER66B|LTR|ERV1	56757	NM_006324	10428	Hs.461361	NM_006324	HPRD:16282	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
19-PTNLD28-TUMOR_peak_105342	chr9	112415414	112415502	+	6.61901	NA	intron (NM_001037293, intron 1 of 6)	intron (NM_001037293, intron 1 of 6)	12390	NM_001037293	114299	Hs.591908	NM_053016	HPRD:17817	PALM2	AKAP2	paralemmin 2	protein-coding
19-PTNLD28-TUMOR_peak_39038	chr16	83890521	83890707	+	6.61901	NA	Intergenic	Intergenic	-42116	NM_012213	23417	Hs.644610	NM_012213	HPRD:05999	MLYCD	MCD	malonyl-CoA decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_85792	chr6	19692100	19692223	+	6.61901	NA	Intergenic	CpG	-145440	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_77274	chr4	141230744	141230886	+	6.61901	NA	intron (NR_033939, intron 2 of 4)	intron (NR_033939, intron 2 of 4)	-33782	NM_001153446	60592	Hs.480815	NM_032547	HPRD:18027	SCOC	SCOCO	short coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_51974	chr2	30998844	30998960	+	6.61901	NA	exon (NM_144575, exon 4 of 23)	exon (NM_144575, exon 4 of 23)	31409	NM_144575	92291	Hs.660911	NM_144575	HPRD:07008	CAPN13	-	calpain 13	protein-coding
19-PTNLD28-TUMOR_peak_83852	chr5	169961277	169961373	+	6.61901	NA	intron (NM_014592, intron 1 of 7)	MER57E1|LTR|ERV1	30285	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_99993	chr8	106743408	106743687	+	6.61901	NA	intron (NM_012082, intron 5 of 7)	intron (NM_012082, intron 5 of 7)	329184	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36479	chr16	15309395	15309512	+	6.61901	NA	Intergenic	Intergenic	-60594	NR_037466	100500852		NR_037466	miRBase:MI0016408	MIR3180-4	-	microRNA 3180-4	ncRNA
19-PTNLD28-TUMOR_peak_78722	chr5	3439172	3439329	+	6.61901	NA	intron (NR_033898, intron 2 of 4)	L1PA3|LINE|L1	64868	NR_104618	102467075	Hs.652949	NR_104618		LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA
19-PTNLD28-TUMOR_peak_15677	chr10	114090078	114090171	+	6.61901	NA	intron (NR_028134, intron 10 of 18)	intron (NR_028134, intron 10 of 18)	26229	NR_028134	390003	Hs.534691	NR_028134	ENSG00000243316	GUCY2GP	GUCY2G	guanylate cyclase 2G, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_59224	chr2	241083217	241083420	+	6.61901	NA	Intergenic	Intergenic	-3245	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_57952	chr2	205048515	205048661	+	6.61901	NA	Intergenic	Intergenic	247117	NM_012092	29851	Hs.56247	NM_012092	HPRD:09196	ICOS	AILIM|CD278|CVID1	inducible T-cell co-stimulator	protein-coding
19-PTNLD28-TUMOR_peak_78412	chr4	187293237	187293534	+	6.61901	NA	intron (NR_033900, intron 1 of 3)	CpG	106267	NM_000128	2160	Hs.1430	NM_000128	HPRD:07524	F11	FXI	coagulation factor XI	protein-coding
19-PTNLD28-TUMOR_peak_105030	chr9	103477061	103477181	+	6.61901	NA	Intergenic	Intergenic	136760	NM_001018116	347273	Hs.99004	NM_001018116	HPRD:18599	MURC	CAVIN4|cavin-4	muscle-related coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_3558	chr1	53731889	53731977	+	6.61901	NA	intron (NM_001018054, intron 9 of 17)	intron (NM_001018054, intron 9 of 17)	-27651	NM_002370	4116	Hs.421576	NM_002370	HPRD:04005	MAGOH	MAGOH1|MAGOHA	mago-nashi homolog, proliferation-associated (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_97974	chr8	29490895	29491061	+	6.61901	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	114647	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_28048	chr13	44549846	44549953	+	6.61901	NA	Intergenic	L1PA2|LINE|L1	-46572	NR_026955	121838	Hs.201441	NR_026955		LINC00284	NCRNA00284	long intergenic non-protein coding RNA 284	ncRNA
19-PTNLD28-TUMOR_peak_4365	chr1	74969965	74970069	+	6.61901	NA	intron (NM_001112808, intron 25 of 26)	intron (NM_001112808, intron 25 of 26)	-73097	NR_121671	101927320	Hs.662589	NR_121670		ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55094	chr2	114072412	114072500	+	6.61901	NA	Intergenic	Intergenic	-35958	NM_003466	7849	Hs.469728	NM_003466	HPRD:01335	PAX8	-	paired box 8	protein-coding
19-PTNLD28-TUMOR_peak_68509	chr3	56734314	56734409	+	6.61901	NA	Intergenic	Intergenic	-17226	NM_001112736	23272	Hs.116877	NM_015224	HPRD:10183	FAM208A	C3orf63|RAP140|se89-1	family with sequence similarity 208, member A	protein-coding
19-PTNLD28-TUMOR_peak_34335	chr15	71466596	71466758	+	6.61901	NA	intron (NR_120349, intron 1 of 1)	L1PA2|LINE|L1	14721	NR_120349	101929196	Hs.680472	NR_120348		LOC101929196	-	uncharacterized LOC101929196	ncRNA
19-PTNLD28-TUMOR_peak_108178	chrX	47372702	47372962	+	6.61901	NA	Intergenic	CpG	-30487	NM_153380	7592	Hs.496074	NM_007130	HPRD:02447	ZNF41	MRX89	zinc finger protein 41	protein-coding
19-PTNLD28-TUMOR_peak_66962	chr3	16391874	16392014	+	6.61901	NA	intron (NM_015150, intron 7 of 9)	L1ME3C|LINE|L1	85277	NM_138381	92106	Hs.655449	NM_138381	HPRD:14446	OXNAD1	-	oxidoreductase NAD-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_100204	chr8	117572682	117572802	+	6.61901	NA	Intergenic	Intergenic	195320	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_32425	chr14	107252277	107252466	+	6.61705	NA	Intergenic	HERV3-int|LTR|ERV1	313926	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_58582	chr2	223520246	223520365	+	6.61705	NA	intron (NM_005687, intron 1 of 16)	L2a|LINE|L2	522	NM_005687	10056	Hs.471452	NM_005687	HPRD:09947	FARSB	FARSLB|FRSB|PheHB|PheRS	phenylalanyl-tRNA synthetase, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_37075	chr16	28869489	28869637	+	6.61705	NA	Intergenic	AluSx|SINE|Alu	-5515	NM_001145795	25970	Hs.15744	NM_015503	HPRD:12336	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2671	chr1	40123845	40123943	+	6.61302	NA	TTS (NM_032526)	TTS (NM_032526)	13816	NM_032526	84618	Hs.307006	NM_032526	HPRD:14844	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
19-PTNLD28-TUMOR_peak_68430	chr3	54155069	54155347	+	6.61302	NA	Intergenic	Intergenic	-1485	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_90685	chr6	170921420	170921545	+	6.61302	NA	Intergenic	CpG	-27702	NM_001199461	5134	Hs.367900	NM_002598	HPRD:02922	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
19-PTNLD28-TUMOR_peak_93190	chr7	73062173	73062481	+	6.61302	NA	Intergenic	CpG	-19847	NM_001077621	155382	Hs.647037	NM_152560	ENSG00000176428	VPS37D	WBSCR24	vacuolar protein sorting 37 homolog D (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_107866	chrX	29680324	29680519	+	6.61302	NA	intron (NM_014271, intron 5 of 10)	L2a|LINE|L2	-553254	NM_002364	4113	Hs.113824	NM_002364	HPRD:02109	MAGEB2	CT3.2|DAM6|MAGE-XP-2	melanoma antigen family B, 2	protein-coding
19-PTNLD28-TUMOR_peak_33269	chr15	42094388	42094479	+	6.61302	NA	intron (NM_001128608, intron 3 of 31)	(TGAG)n|Simple_repeat|Simple_repeat	-25850	NM_001114632	100137047	Hs.198161	NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_80030	chr5	56737506	56737594	+	6.61302	NA	Intergenic	Intergenic	41086	NM_001017992	345651	Hs.482167	NM_001017992	HPRD:18598	ACTBL2	ACT	actin, beta-like 2	protein-coding
19-PTNLD28-TUMOR_peak_3563	chr1	53775429	53775542	+	6.61302	NA	intron (NM_001018054, intron 2 of 17)	intron (NM_001018054, intron 2 of 17)	18336	NM_004631	7804	Hs.280387	NM_004631		LRP8	APOER2|HSZ75190|LRP-8|MCI1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding
19-PTNLD28-TUMOR_peak_96789	chr7	158805524	158805740	+	6.61240	NA	intron (NR_024394, intron 1 of 4)	intron (NR_024394, intron 1 of 4)	4587	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
19-PTNLD28-TUMOR_peak_18494	chr11	47866326	47866433	+	6.61240	NA	intron (NM_015231, intron 2 of 35)	MER41A|LTR|ERV1	3678	NM_015231	23279	Hs.744107	NM_015231	HPRD:16254	NUP160	-	nucleoporin 160kDa	protein-coding
19-PTNLD28-TUMOR_peak_96314	chr7	150652708	150652898	+	6.61240	NA	5' UTR (NM_172057, exon 1 of 11)	5' UTR (NM_172057, exon 1 of 11)	114	NM_001204798	3757	Hs.647099	NM_000238	HPRD:01069	KCNH2	ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding
19-PTNLD28-TUMOR_peak_1505	chr1	24286484	24286592	+	6.60556	NA	intron (NM_017761, intron 1 of 2)	CpG	237	NM_017761	55629	Hs.7862	NM_017761	HPRD:17871	PNRC2	-	proline-rich nuclear receptor coactivator 2	protein-coding
19-PTNLD28-TUMOR_peak_20628	chr11	94226705	94226795	+	6.60556	NA	promoter-TSS (NM_017704)	promoter-TSS (NM_017704)	290	NM_005591	4361	Hs.192649	NM_005590	HPRD:02889	MRE11A	ATLD|HNGS1|MRE11|MRE11B	MRE11 meiotic recombination 11 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_63450	chr21	38580413	38580582	+	6.60556	NA	promoter-TSS (NR_026719)	promoter-TSS (NR_026719)	-307	NR_026719	257203	Hs.505159	NM_148675	HPRD:10925	DSCR9	NCRNA00038	Down syndrome critical region gene 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_68217	chr3	50374115	50374405	+	6.60455	NA	promoter-TSS (NR_109831)	promoter-TSS (NR_109831)	635	NM_170713	11186	Hs.476270	NM_007182	HPRD:05470	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association (RalGDS/AF-6) domain family member 1	protein-coding
19-PTNLD28-TUMOR_peak_6998	chr1	153651054	153651272	+	6.60455	NA	promoter-TSS (NM_000906)	promoter-TSS (NM_000906)	-1	NM_000906	4881	Hs.490330	NM_000906	HPRD:00165	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_86595	chr6	31324275	31324541	+	6.60455	NA	intron (NM_005514, intron 2 of 7).3	CpG	581	NM_005514	3106	Hs.77961	NM_005514	HPRD:00828	HLA-B	AS|HLAB|SPDA1	major histocompatibility complex, class I, B	protein-coding
19-PTNLD28-TUMOR_peak_78071	chr4	174256376	174256482	+	6.60361	NA	promoter-TSS (NM_001130688)	promoter-TSS (NM_001130688)	-834	NM_002129	3148	Hs.434953	NM_002129		HMGB2	HMG2	high mobility group box 2	protein-coding
19-PTNLD28-TUMOR_peak_104522	chr9	93316475	93316569	+	6.60085	NA	intron (NR_034157, intron 1 of 5)	intron (NR_034157, intron 1 of 5)	28506	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
19-PTNLD28-TUMOR_peak_8991	chr1	193027814	193028021	+	6.60085	NA	promoter-TSS (NM_001173524)	promoter-TSS (NM_001173524)	606	NM_001199261	51377	Hs.145469	NM_015984	HPRD:10293	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin carboxyl-terminal hydrolase L5	protein-coding
19-PTNLD28-TUMOR_peak_43650	chr17	75369047	75369137	+	6.60085	NA	promoter-TSS (NM_001113493)	promoter-TSS (NM_001113493)	-180	NM_001113493	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_13450	chr10	48427914	48428007	+	6.60085	NA	intron (NM_004962, intron 2 of 2)	intron (NM_004962, intron 2 of 2)	-11088	NM_016204	2658	Hs.279463	NM_016204	HPRD:05492	GDF2	BMP-9|BMP9|HHT5	growth differentiation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_42059	chr17	46619141	46619329	+	6.60085	NA	TTS (NM_002145)	TTS (NM_002145)	-2478	NR_102279	100874362	Hs.171806	NR_102279	ENSG00000230148	HOXB-AS1	-	HOXB cluster antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103703	chr9	72048534	72048652	+	6.60022	NA	intron (NM_001163, intron 11 of 12)	intron (NM_001163, intron 11 of 12)	104352	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_63825	chr21	44561484	44561780	+	6.60022	NA	Intergenic	Intergenic	-27486	NM_000394	1409	Hs.184085	NM_000394	HPRD:00427	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
19-PTNLD28-TUMOR_peak_82594	chr5	139514415	139514604	+	6.60022	NA	Intergenic	L2a|LINE|L2	8988	NM_001007189	492311	Hs.696360	NM_001007189	HPRD:17411	IGIP	C5orf53	IgA-inducing protein	protein-coding
19-PTNLD28-TUMOR_peak_10290	chr1	223566937	223567232	+	6.60022	NA	exon (NM_152610, exon 1 of 1)	exon (NM_152610, exon 1 of 1)	369	NM_152610	164127	Hs.192090	NM_152610	HPRD:08761	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
19-PTNLD28-TUMOR_peak_7531	chr1	159818849	159819000	+	6.60022	NA	intron (NM_001134233, intron 2 of 5)	intron (NM_001134233, intron 2 of 5)	6213	NM_001134233	284677	Hs.647718	NM_001134233	ENSG00000188004	C1orf204	-	chromosome 1 open reading frame 204	protein-coding
19-PTNLD28-TUMOR_peak_110020	chrX	153979022	153979207	+	6.60022	NA	intron (NR_104114, intron 1 of 8)	CpG	244	NM_001282283	139716	Hs.496982	NM_080612	HPRD:06571	GAB3	-	GRB2-associated binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_24661	chr12	56453856	56453982	+	6.60022	NA	Intergenic	AluSx|SINE|Alu	18233	NM_001029	6231	Hs.447562	NM_001029	HPRD:04743	RPS26	DBA10|S26	ribosomal protein S26	protein-coding
19-PTNLD28-TUMOR_peak_55730	chr2	131722234	131722362	+	6.60022	NA	intron (NM_032995, intron 3 of 11)	intron (NM_032995, intron 3 of 11)	47328	NM_032995	50649	Hs.469935	NM_015320	HPRD:05559	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_32147	chr14	103006891	103007113	+	6.60022	NA	TTS (NR_036192)	TTS (NR_036192)	1021	NR_036192	100422954		NR_036192	miRBase:MI0015837	MIR4309	-	microRNA 4309	ncRNA
19-PTNLD28-TUMOR_peak_88998	chr6	108286185	108286366	+	6.60022	NA	Intergenic	MER61A|LTR|ERV1	-6793	NM_007214	11231	Hs.26904	NM_007214	HPRD:09783	SEC63	DNAJC23|ERdj2|PRO2507|SEC63L	SEC63 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_49363	chr19	45601611	45601856	+	6.60022	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	5302	NM_019121	284352	Hs.285363	NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1, regulatory subunit 37	protein-coding
19-PTNLD28-TUMOR_peak_88481	chr6	80582776	80582939	+	6.59767	NA	Intergenic	Intergenic	-2720	NM_001243308	89758	Hs.288213	NM_001243308		C6orf7	-	chromosome 6 open reading frame 7	protein-coding
19-PTNLD28-TUMOR_peak_61455	chr20	45344217	45344360	+	6.59767	NA	intron (NM_030777, intron 1 of 4)	intron (NM_030777, intron 1 of 4)	6009	NM_030777	81031	Hs.305971	NM_030777	HPRD:05851	SLC2A10	ATS|GLUT10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_81110	chr5	90370440	90370584	+	6.59767	NA	intron (NR_003149, intron 86 of 89)	L1PA15|LINE|L1	239707	NR_103548	100505994	Hs.628363	NR_103548	ENSG00000248323	LUCAT1	SCAL1	lung cancer associated transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_107975	chrX	39756864	39757002	+	6.59767	NA	Intergenic	Intergenic	199786	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_1647	chr1	26410857	26411037	+	6.59767	NA	Intergenic	Intergenic	-16822	NM_032588	84676	Hs.279709	NM_032588	HPRD:05843	TRIM63	IRF|MURF1|MURF2|RNF28|SMRZ	tripartite motif containing 63, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_81319	chr5	98879711	98879854	+	6.59767	NA	intron (NR_110562, intron 2 of 3)	L2a|LINE|L2	10088	NR_110562	102724855	Hs.519477	NR_110562		CTD-2151A2.1	-	uncharacterized LOC102724855	ncRNA
19-PTNLD28-TUMOR_peak_41106	chr17	34234819	34234945	+	6.59767	NA	Intergenic	Intergenic	22421	NR_028000	201299	Hs.194411	NM_145654	HPRD:15205	RDM1	RAD52B	RAD52 motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_29212	chr13	114781096	114781338	+	6.59767	NA	intron (NM_007368, intron 13 of 23)	intron (NM_007368, intron 13 of 23)	116878	NM_007368	22821	Hs.593075	NM_007368	HPRD:05537	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
19-PTNLD28-TUMOR_peak_26158	chr12	109043992	109044164	+	6.59767	NA	intron (NM_001105237, intron 8 of 10)	AluJb|SINE|Alu	-16408	NM_003006	6404	Hs.591014	NM_003006	HPRD:02845	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
19-PTNLD28-TUMOR_peak_90975	chr7	3211525	3211688	+	6.59767	NA	Intergenic	Intergenic	-128027	NM_032415	84433	Hs.648101	NM_032415	HPRD:06234	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_105320	chr9	112215118	112215375	+	6.59767	NA	intron (NM_002829, intron 5 of 25)	intron (NM_002829, intron 5 of 25)	-1582	NM_001145370	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_96603	chr7	155082922	155083010	+	6.59767	NA	Intergenic	L2|LINE|L2	-6520	NM_198337	3638	Hs.520819	NM_005542	HPRD:03633	INSIG1	CL-6|CL6	insulin induced gene 1	protein-coding
19-PTNLD28-TUMOR_peak_28237	chr13	50160110	50160211	+	6.59767	NA	promoter-TSS (NM_018191)	promoter-TSS (NM_018191)	-441	NM_018191	55213	Hs.508021	NM_018191	HPRD:09713	RCBTB1	CLLD7|CLLL7|GLP	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_237	chr1	2412210	2412379	+	6.59605	NA	intron (NM_014638, intron 4 of 21)	intron (NM_014638, intron 4 of 21)	4540	NM_014638	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-eta2|PLCL4|PLCeta2	phospholipase C, eta 2	protein-coding
19-PTNLD28-TUMOR_peak_81187	chr5	93903916	93904114	+	6.59366	NA	intron (NM_173665, intron 2 of 4)	intron (NM_173665, intron 2 of 4)	50294	NM_173665	285600	Hs.425123	NM_173665	HPRD:11337	KIAA0825	C5orf36	KIAA0825	protein-coding
19-PTNLD28-TUMOR_peak_109969	chrX	153625387	153625542	+	6.59362	NA	Intergenic	AluJb|SINE|Alu	-1107	NM_001256580	6134	Hs.534404	NM_006013	HPRD:02421	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding
19-PTNLD28-TUMOR_peak_14178	chr10	72973153	72973313	+	6.59291	NA	intron (NM_001244889, intron 1 of 15)	CpG	941	NM_170744	219699	Hs.522997	NM_170744	HPRD:08487	UNC5B	UNC5H2|p53RDL1	unc-5 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_65055	chr22	30606462	30606722	+	6.59291	NA	Intergenic	Intergenic	36248	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_2218	chr1	33687094	33687316	+	6.59271	NA	Intergenic	MIRb|SINE|MIR	-34969	NM_152493	149076	Hs.743358	NM_152493	HPRD:13394	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
19-PTNLD28-TUMOR_peak_109892	chrX	152953075	152953223	+	6.59245	NA	promoter-TSS (NM_001142805)	promoter-TSS (NM_001142805)	-603	NM_005629	6535	Hs.540696	NM_005629	HPRD:02073	SLC6A8	CCDS1|CRT|CRTR|CT1|CTR5	solute carrier family 6 (neurotransmitter transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_40858	chr17	27895296	27895475	+	6.59182	NA	promoter-TSS (NM_138349)	promoter-TSS (NM_138349)	-354	NM_138349	90313	Hs.514050	NM_138349	HPRD:14267	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
19-PTNLD28-TUMOR_peak_80399	chr5	67640749	67640842	+	6.59182	NA	Intergenic	Intergenic	52399	NM_001242466	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_105910	chr9	124487315	124487547	+	6.58795	NA	intron (NM_032552, intron 3 of 16)	(TG)n|Simple_repeat|Simple_repeat	-17633	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_19203	chr11	64739343	64739762	+	6.58795	NA	promoter-TSS (NM_001037225)	promoter-TSS (NM_001037225)	11	NM_001300803	283129	Hs.567793	NM_001037225	HPRD:18761	C11orf85	-	chromosome 11 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_61102	chr20	39634100	39634299	+	6.58584	NA	Intergenic	Intergenic	-23263	NM_003286	7150	Hs.472737	NM_003286	HPRD:00535	TOP1	TOPI	topoisomerase (DNA) I	protein-coding
19-PTNLD28-TUMOR_peak_7559	chr1	159919075	159919282	+	6.58432	NA	Intergenic	Intergenic	-3792	NM_001135050	57549	Hs.591472	NM_020789	HPRD:10001	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_65682	chr22	41809486	41810021	+	6.58307	NA	Intergenic	CpG	31820	NM_003216	7008	Hs.181159	NM_003216	HPRD:01783	TEF	-	thyrotrophic embryonic factor	protein-coding
19-PTNLD28-TUMOR_peak_72800	chr3	184311057	184311223	+	6.58307	NA	Intergenic	Intergenic	31553	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_89263	chr6	118972966	118973116	+	6.58245	NA	promoter-TSS (NM_206921)	promoter-TSS (NM_206921)	-21	NM_206921	387119	Hs.656959	NM_206921	HPRD:12874	CEP85L	C6orf204|NY-BR-15|bA57K17.2	centrosomal protein 85kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_16626	chr11	1990357	1990497	+	6.58245	NA	Intergenic	Intergenic	20723	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49850	chr19	50016762	50016881	+	6.58245	NA	intron (NM_001136019, intron 2 of 6)	CpG	385	NM_004107	2217	Hs.111903	NM_004107	HPRD:03257	FCGRT	FCRN|alpha-chain	Fc fragment of IgG, receptor, transporter, alpha	protein-coding
19-PTNLD28-TUMOR_peak_16623	chr11	1969239	1969327	+	6.58245	NA	intron (NM_021134, intron 1 of 4)	intron (NM_021134, intron 1 of 4)	781	NM_021134	6150	Hs.3254	NM_021134	HPRD:02876	MRPL23	L23MRP|RPL23|RPL23L	mitochondrial ribosomal protein L23	protein-coding
19-PTNLD28-TUMOR_peak_104296	chr9	89021410	89021537	+	6.58245	NA	Intergenic	Intergenic	-52071	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_17850	chr11	32456098	32456328	+	6.58039	NA	promoter-TSS (NR_023920)	promoter-TSS (NR_023920)	-851	NR_023920	51352	Hs.567499	NM_015855		WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_66126	chr22	50969392	50969674	+	6.57951	NA	intron (NM_001014440, intron 4 of 6)	CpG-18151	-1019	NM_001257989	1890	Hs.180903	NM_001953	HPRD:08833	TYMP	ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF	thymidine phosphorylase	protein-coding
19-PTNLD28-TUMOR_peak_31329	chr14	75744152	75744264	+	6.57531	NA	Intergenic	CpG	-1273	NM_005252	2353	Hs.25647	NM_005252	HPRD:01275	FOS	AP-1|C-FOS|p55	FBJ murine osteosarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_2369	chr1	36273173	36273329	+	6.57351	NA	promoter-TSS (NM_017629)	promoter-TSS (NM_017629)	-577	NM_017629	192670	Hs.744858	NM_017629	HPRD:09559	AGO4	EIF2C4	argonaute RISC catalytic component 4	protein-coding
19-PTNLD28-TUMOR_peak_30950	chr14	68994147	68994392	+	6.57351	NA	intron (NM_133509, intron 10 of 10)	MIRb|SINE|MIR	266362	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_39213	chr16	85686629	85686733	+	6.57351	NA	intron (NM_001134473, intron 2 of 14)	intron (NM_001134473, intron 2 of 14)	26867	NR_107005	102467003		NR_107005		MIR7851	hsa-mir-7851	microRNA 7851	ncRNA
19-PTNLD28-TUMOR_peak_2781	chr1	41315814	41315906	+	6.57351	NA	Intergenic	Intergenic	12158	NM_133467	163732	Hs.355820	NM_133467	HPRD:06011	CITED4	-	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding
19-PTNLD28-TUMOR_peak_3309	chr1	47882144	47882436	+	6.57351	NA	exon (NM_012186, exon 1 of 1)	exon (NM_012186, exon 1 of 1)	546	NM_012186	2301	Hs.112968	NM_012186	HPRD:03058	FOXE3	FKHL12|FREAC8	forkhead box E3	protein-coding
19-PTNLD28-TUMOR_peak_23951	chr12	46776909	46776997	+	6.57351	NA	promoter-TSS (NR_125378)	promoter-TSS (NR_125378)	-506	NR_125378	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
19-PTNLD28-TUMOR_peak_40934	chr17	29816829	29816951	+	6.57351	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	-45011	NR_039877	100616248		NR_039877	miRBase:MI0017361	MIR4724	-	microRNA 4724	ncRNA
19-PTNLD28-TUMOR_peak_86340	chr6	28805531	28805854	+	6.57342	NA	Intergenic	AluY|SINE|Alu	25762	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_55995	chr2	138224986	138225075	+	6.57146	NA	intron (NM_001080427, intron 14 of 26)	MER5A1|DNA|hAT-Charlie	460472	NR_120402	101928273	Hs.560928	NR_120402	ENSG00000234007	LOC101928273	-	uncharacterized LOC101928273	ncRNA
19-PTNLD28-TUMOR_peak_64895	chr22	27496818	27497078	+	6.57146	NA	Intergenic	Intergenic	197693	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_42606	chr17	56665143	56665310	+	6.57146	NA	intron (NM_198393, intron 16 of 32)	intron (NM_198393, intron 16 of 32)	-43493	NM_001038704	284083	Hs.646574	NM_001038704	HPRD:08269	C17orf47	-	chromosome 17 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_430	chr1	7232977	7233107	+	6.57146	NA	intron (NM_015215, intron 4 of 22)	intron (NM_015215, intron 4 of 22)	387658	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_94867	chr7	112213595	112213804	+	6.57146	NA	Intergenic	Intergenic	-44421	NR_110160	100996249	Hs.561749	NR_110159		LOC100996249	-	uncharacterized LOC100996249	ncRNA
19-PTNLD28-TUMOR_peak_64625	chr22	22684573	22684776	+	6.57146	NA	Intergenic	Intergenic	32211	NR_027293	96610	Hs.449601	NM_080926	HPRD:14302	BMS1P20	-	BMS1 pseudogene 20	pseudo
19-PTNLD28-TUMOR_peak_5920	chr1	118878254	118878342	+	6.57146	NA	Intergenic	HERVL-int|LTR|ERVL	-150450	NM_206996	200162	Hs.528821	NM_206996	HPRD:10146	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding
19-PTNLD28-TUMOR_peak_105065	chr9	104500403	104500670	+	6.57146	NA	5' UTR (NM_133445, exon 1 of 9)	5' UTR (NM_133445, exon 1 of 9)	326	NM_133445	116443	Hs.654783	NM_133445	HPRD:09443	GRIN3A	GluN3A|NMDAR-L|NR3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	protein-coding
19-PTNLD28-TUMOR_peak_55835	chr2	133408824	133408920	+	6.57146	NA	intron (NM_144586, intron 2 of 2)	intron (NM_144586, intron 2 of 2)	19609	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_86353	chr6	28878784	28878891	+	6.57146	NA	intron (NM_006510, intron 4 of 7).3	intron (NM_006510, intron 4 of 7).3	12931	NM_006510	5987	Hs.440382	NM_006510	HPRD:15996	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
19-PTNLD28-TUMOR_peak_83440	chr5	155595967	155596317	+	6.57146	NA	Intergenic	Intergenic	-157625	NM_172244	6444	Hs.387207	NM_000337	HPRD:03246	SGCD	35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD	sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_71176	chr3	138483500	138483607	+	6.57146	NA	Intergenic	L2c|LINE|L2	-5352	NM_006219	5291	Hs.239818	NM_006219		PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta	protein-coding
19-PTNLD28-TUMOR_peak_51413	chr2	19933794	19933913	+	6.57146	NA	Intergenic	Intergenic	-134762	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
19-PTNLD28-TUMOR_peak_106144	chr9	129719675	129719916	+	6.57146	NA	intron (NM_001190730, intron 1 of 11)	intron (NM_001190730, intron 1 of 11)	-4709	NM_001190728	9649	Hs.432842	NM_014636	HPRD:11479	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
19-PTNLD28-TUMOR_peak_109458	chrX	130262672	130262760	+	6.57146	NA	Intergenic	L1PA3|LINE|L1	70500	NM_144967	158763	Hs.22905	NM_144967	HPRD:06547	ARHGAP36	-	Rho GTPase activating protein 36	protein-coding
19-PTNLD28-TUMOR_peak_6446	chr1	147099362	147099507	+	6.57146	NA	Intergenic	Intergenic	43200	NM_016361	51205	Hs.562154	NM_016361		ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
19-PTNLD28-TUMOR_peak_78668	chr5	1396238	1396352	+	6.57146	NA	intron (NM_001044, intron 14 of 14)	intron (NM_001044, intron 14 of 14)	49248	NM_001044	6531	Hs.406	NM_001044	HPRD:00543	SLC6A3	DAT|DAT1|PKDYS	solute carrier family 6 (neurotransmitter transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_89673	chr6	138801816	138802008	+	6.57146	NA	intron (NM_020464, intron 2 of 6)	intron (NM_020464, intron 2 of 6)	18667	NM_001144060	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS-like 1	protein-coding
19-PTNLD28-TUMOR_peak_55051	chr2	113642553	113642719	+	6.57146	NA	Intergenic	Intergenic	-27912	NM_173203	27178	Hs.166371	NM_014439	HPRD:05695	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
19-PTNLD28-TUMOR_peak_101264	chr8	136985930	136986047	+	6.57146	NA	Intergenic	LTR16D|LTR|ERVL	516272	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_77673	chr4	154064817	154065201	+	6.57146	NA	Intergenic	Intergenic	-9261	NM_001130067	23321	Hs.435711	NM_015271	HPRD:10279	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
19-PTNLD28-TUMOR_peak_13781	chr10	61755605	61755732	+	6.57113	NA	Intergenic	Intergenic	-34997	NR_024340	283025	Hs.522955	NM_001017982	ENSG00000235931	C10orf40	-	chromosome 10 open reading frame 40	ncRNA
19-PTNLD28-TUMOR_peak_17751	chr11	28129369	28129501	+	6.57113	NA	promoter-TSS (NM_152636)	promoter-TSS (NM_152636)	311	NM_031217	81930	Hs.301052	NM_031217	HPRD:11177	KIF18A	MS-KIF18A|PPP1R99	kinesin family member 18A	protein-coding
19-PTNLD28-TUMOR_peak_82740	chr5	140998097	140998376	+	6.56810	NA	intron (NM_005219, intron 1 of 27)	CpG	386	NM_001079812	1729	Hs.529451	NM_005219	HPRD:03670	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|hDIA1	diaphanous-related formin 1	protein-coding
19-PTNLD28-TUMOR_peak_39991	chr17	7464412	7464623	+	6.56810	NA	promoter-TSS (NM_015670)	promoter-TSS (NM_015670)	-792	NM_015670	26168	Hs.513926	NM_015670	HPRD:08339	SENP3	SMT3IP1|SSP3|Ulp1	SUMO1/sentrin/SMT3 specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_101518	chr8	143251509	143251611	+	6.56782	NA	Intergenic	Intergenic	-6140	NR_039682	100616268		NR_039682	miRBase:MI0016823	MIR4472-1	-	microRNA 4472-1	ncRNA
19-PTNLD28-TUMOR_peak_54293	chr2	97078751	97078980	+	6.56782	NA	Intergenic	MER41A|LTR|ERV1	77386	NM_015341	23397	Hs.308045	NM_015341	HPRD:03820	NCAPH	BRRN1|CAP-H	non-SMC condensin I complex, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_68304	chr3	52035645	52035743	+	6.56782	NA	Intergenic	Intergenic	-5736	NM_000992	6159	Hs.425125	NM_000992	HPRD:03495	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370	ribosomal protein L29	protein-coding
19-PTNLD28-TUMOR_peak_7546	chr1	159887510	159887652	+	6.56707	NA	TTS (NM_001277224)	TTS (NM_001277224)	5926	NM_001277224	8407	Hs.517168	NM_003564	HPRD:06864	TAGLN2	HA1756	transgelin 2	protein-coding
19-PTNLD28-TUMOR_peak_29808	chr14	34116615	34116707	+	6.56567	NA	intron (NM_001165893, intron 4 of 10)	intron (NM_001165893, intron 4 of 10)	303623	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_59337	chr2	242786344	242786432	+	6.56567	NA	Intergenic	CpG	14670	NM_005018	5133	Hs.158297	NM_005018	HPRD:02590	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
19-PTNLD28-TUMOR_peak_23363	chr12	21679121	21679224	+	6.56567	NA	promoter-TSS (NM_030572)	promoter-TSS (NM_030572)	-84	NM_030572	80763	Hs.130692	NM_030572		SPX	C12orf39	spexin hormone	protein-coding
19-PTNLD28-TUMOR_peak_48614	chr19	34919662	34919772	+	6.56567	NA	intron (NM_005499, intron 1 of 16)	CpG	449	NM_005499	10054	Hs.631580	NM_005499	HPRD:11658	UBA2	ARX|SAE2	ubiquitin-like modifier activating enzyme 2	protein-coding
19-PTNLD28-TUMOR_peak_8062	chr1	168454405	168454568	+	6.56567	NA	Intergenic	L1PA8|LINE|L1	58749	NM_003175	6846	Hs.458346	NM_003175	HPRD:05317	XCL2	SCM-1b|SCM1B|SCYC2	chemokine (C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_29140	chr13	113597797	113598058	+	6.56567	NA	Intergenic	CpG	25025	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65849	chr22	44577552	44577698	+	6.56567	NA	5' UTR (NM_022141, exon 2 of 14)	5' UTR (NM_022141, exon 2 of 14)	855	NM_022141	64098	Hs.658995	NM_022141	HPRD:16285	PARVG	-	parvin, gamma	protein-coding
19-PTNLD28-TUMOR_peak_24951	chr12	63794581	63794871	+	6.56567	NA	Intergenic	LTR18B|LTR|ERVL	-248136	NM_000706	552	Hs.2131	NM_000706		AVPR1A	AVPR V1a|AVPR1|V1aR	arginine vasopressin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_40160	chr17	9519407	9519537	+	6.56567	NA	intron (NM_145054, intron 8 of 13)	L1HS|LINE|L1	-29382	NM_153210	124739	Hs.709621	NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
19-PTNLD28-TUMOR_peak_58551	chr2	221756296	221756417	+	6.56567	NA	Intergenic	Intergenic	680654	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_82314	chr5	134761922	134762026	+	6.56567	NA	Intergenic	Intergenic	21064	NM_130848	140947	Hs.152477	NM_130848	HPRD:16786	DCANP1	C5orf20|DCNP1	dendritic cell-associated nuclear protein	protein-coding
19-PTNLD28-TUMOR_peak_19768	chr11	70864184	70864422	+	6.56567	NA	intron (NM_012309, intron 1 of 22)	intron (NM_012309, intron 1 of 22)	71539	NM_012309	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_56510	chr2	159379209	159379377	+	6.56567	NA	intron (NM_001005476, intron 1 of 20)	L1PA2|LINE|L1	65817	NM_001005476	8502	Hs.407580	NM_003628	HPRD:05043	PKP4	p0071	plakophilin 4	protein-coding
19-PTNLD28-TUMOR_peak_41254	chr17	36857757	36857964	+	6.56474	NA	TTS (NR_039887)	TTS (NR_039887)	724	NR_039887	100616203		NR_039887	miRBase:MI0017371	MIR4734	-	microRNA 4734	ncRNA
19-PTNLD28-TUMOR_peak_65413	chr22	37897774	37897955	+	6.56086	NA	intron (NM_014550, intron 11 of 19)	intron (NM_014550, intron 11 of 19)	-15386	NM_002405	4242	Hs.517603	NM_002405	HPRD:03988	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_107985	chrX	39968256	39968446	+	6.56086	NA	intron (NM_001123384, intron 1 of 13)	CpG-27857	-11632	NM_001123385	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_13502	chr10	49671720	49671896	+	6.56086	NA	intron (NR_045675, intron 5 of 10)	intron (NR_045675, intron 5 of 10)	29884	NM_001256026	58504	Hs.655672	NM_021226	HPRD:12476	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
19-PTNLD28-TUMOR_peak_14890	chr10	93348895	93348990	+	6.56086	NA	intron (NR_024467, intron 1 of 4)	L2a|LINE|L2	22275	NR_024467	100188947	Hs.535293	NR_024467		HECTD2-AS1	-	HECTD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_79985	chr5	55839337	55839545	+	6.55764	NA	intron (NM_001287053, intron 2 of 5)	intron (NM_001287053, intron 2 of 5)	-61845	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_19734	chr11	70143469	70143723	+	6.55764	NA	intron (NM_003626, intron 2 of 27)	intron (NM_003626, intron 2 of 27)	13535	NR_031624	100313770		NR_031624		MIR548K	MIRN548K	microRNA 548k	ncRNA
19-PTNLD28-TUMOR_peak_85464	chr6	13217892	13217990	+	6.55764	NA	intron (NM_030948, intron 8 of 14)	intron (NM_030948, intron 8 of 14)	77877	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_27387	chr13	21571794	21571988	+	6.55764	NA	intron (NM_014572, intron 2 of 7)	intron (NM_014572, intron 2 of 7)	-48324	NR_104058	101930748	Hs.637638	NR_104058		LINC00367	-	long intergenic non-protein coding RNA 367	ncRNA
19-PTNLD28-TUMOR_peak_81688	chr5	115697402	115697603	+	6.55764	NA	Intergenic	CpG	12765	NR_104675	101927190	Hs.639849	NR_104675		LOC101927190	-	uncharacterized LOC101927190	ncRNA
19-PTNLD28-TUMOR_peak_91192	chr7	6703505	6703641	+	6.55764	NA	Intergenic	CpG	26620	NM_001278559	100131017	Hs.112668	NM_001278559		ZNF316	ENST00000305834|MZF-3	zinc finger protein 316	protein-coding
19-PTNLD28-TUMOR_peak_48759	chr19	36588169	36588383	+	6.55764	NA	intron (NM_173636, intron 21 of 31)	L2a|LINE|L2	-13829	NM_001270948	728361	Hs.143920	NM_001270948		OVOL3	HOVO3	ovo-like zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_73686	chr3	197616335	197616446	+	6.55764	NA	3' UTR (NM_001134435, exon 11 of 11)	3' UTR (NM_001134435, exon 11 of 11)	60406	NM_001134435	84223	Hs.591675	NM_032263	HPRD:13746	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
19-PTNLD28-TUMOR_peak_75920	chr4	81104919	81105432	+	6.55764	NA	Intergenic	CpG	-1249	NM_020226	56978	Hs.373642	NM_020226	HPRD:17904	PRDM8	PFM5	PR domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_21718	chr11	122073782	122073942	+	6.55764	NA	promoter-TSS (NR_024430)	promoter-TSS (NR_024430)	-92	NR_024430	399959	Hs.44098	NR_024430	ENSG00000255248	MIR100HG	AGD1|lncRNA-N2	mir-100-let-7a-2 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_96071	chr7	143434652	143434749	+	6.55764	NA	Intergenic	L1ME3B|LINE|L1	20143	NM_178561	340307	Hs.676333	NM_178561	ENSG00000271321	CTAGE6	CTAGE6P	CTAGE family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_903	chr1	13785364	13785499	+	6.55764	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	48524	NM_001099852	645425	Hs.700560	NM_001099852	ENSG00000204478	PRAMEF20	PRAMEF21	PRAME family member 20	protein-coding
19-PTNLD28-TUMOR_peak_108358	chrX	52606153	52606276	+	6.55764	NA	Intergenic	HERV1_I-int|LTR|ERV1	-45771	NR_027250	280659	Hs.694472	NM_174961	HPRD:06728	SSX8	-	synovial sarcoma, X breakpoint 8	pseudo
19-PTNLD28-TUMOR_peak_13571	chr10	50862681	50862776	+	6.55764	NA	intron (NM_020986, intron 11 of 14)	intron (NM_020986, intron 11 of 14)	-24956	NM_182554	282966	Hs.131287	NM_182554		C10orf53	-	chromosome 10 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_24733	chr12	57230261	57230421	+	6.55764	NA	Intergenic	MER50-int|LTR|ERV1	73339	NM_003725	8630	Hs.524513	NM_003725	HPRD:09431	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
19-PTNLD28-TUMOR_peak_81687	chr5	115697084	115697292	+	6.55764	NA	Intergenic	CpG	13079	NR_104675	101927190	Hs.639849	NR_104675		LOC101927190	-	uncharacterized LOC101927190	ncRNA
19-PTNLD28-TUMOR_peak_58219	chr2	213788313	213788401	+	6.55764	NA	Intergenic	Intergenic	-2624	NR_039935	100616267		NR_039935	miRBase:MI0017419	MIR4776-1	-	microRNA 4776-1	ncRNA
19-PTNLD28-TUMOR_peak_78387	chr4	186752734	186752828	+	6.55764	NA	intron (NM_021069, intron 1 of 20)	L2b|LINE|L2	-19371	NM_003603	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_82656	chr5	140098330	140098516	+	6.55764	NA	promoter-TSS (NR_026704)	promoter-TSS (NR_026704)	-88	NR_026704	56663		NR_026704	ENSG00000202111	VTRNA1-2	HVG2|VAULTRC2|VR2|hvg-2	vault RNA 1-2	ncRNA
19-PTNLD28-TUMOR_peak_106855	chr9	140339787	140339970	+	6.55217	NA	Intergenic	Intergenic	-3977	NM_001033113	377841	Hs.512562	NM_198585	HPRD:16864	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
19-PTNLD28-TUMOR_peak_36530	chr16	16090936	16091042	+	6.55217	NA	intron (NM_004996, intron 1 of 30)	AluSc8|SINE|Alu	47555	NM_004996	4363	Hs.391464	NM_004996	HPRD:01153	ABCC1	ABC29|ABCC|GS-X|MRP|MRP1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding
19-PTNLD28-TUMOR_peak_71788	chr3	152374130	152374243	+	6.55217	NA	Intergenic	Intergenic	-178550	NM_002563	5028	Hs.654526	NM_002563	HPRD:03103	P2RY1	P2Y1	purinergic receptor P2Y, G-protein coupled, 1	protein-coding
19-PTNLD28-TUMOR_peak_16638	chr11	2187467	2187572	+	6.55217	NA	intron (NM_199292, intron 10 of 13)	CpG	-5080	NR_003512	723961	Hs.272259	NM_001042376	ENSG00000129965	INS-IGF2	INSIGF	INS-IGF2 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_20241	chr11	77939564	77939661	+	6.55217	NA	intron (NM_012296, intron 3 of 9)	intron (NM_012296, intron 3 of 9)	39754	NM_020798	57558	Hs.531249	NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
19-PTNLD28-TUMOR_peak_29192	chr13	114517561	114517649	+	6.55217	NA	promoter-TSS (NR_044995)	promoter-TSS (NR_044995)	-978	NR_044995	650669	Hs.369201	NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10784	chr1	230484492	230484620	+	6.55217	NA	intron (NM_001258311, intron 3 of 6)	intron (NM_001258311, intron 3 of 6)	77118	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_7399	chr1	157166809	157166966	+	6.55217	NA	Intergenic	Intergenic	-58504	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_81994	chr5	127564306	127564402	+	6.55217	NA	Intergenic	Intergenic	144871	NR_046207	6558	Hs.162585	NM_001046	HPRD:06775	SLC12A2	BSC|BSC2|NKCC1|PPP1R141	solute carrier family 12 (sodium/potassium/chloride transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_79913	chr5	54514955	54515080	+	6.55217	NA	TTS (NM_001190787)	TTS (NM_001190787)	8126	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
19-PTNLD28-TUMOR_peak_41132	chr17	34797612	34797945	+	6.55173	NA	exon (NM_001001417, exon 14 of 14)	exon (NM_001001417, exon 14 of 14)	10282	NM_032258	84218	Hs.617010	NM_032258	HPRD:09667	TBC1D3F	TBC1D3|TBC1D3G	TBC1 domain family, member 3F	protein-coding
19-PTNLD28-TUMOR_peak_32051	chr14	100626497	100626615	+	6.55069	NA	promoter-TSS (NM_206918)	promoter-TSS (NM_206918)	-544	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_60497	chr20	31071846	31071962	+	6.55069	NA	promoter-TSS (NM_080616)	promoter-TSS (NM_080616)	-519	NM_080616	140688	Hs.516978	NM_080616	HPRD:10728	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4-like	protein-coding
19-PTNLD28-TUMOR_peak_97530	chr8	21777894	21778135	+	6.55069	NA	intron (NM_015024, intron 1 of 27)	intron (NM_015024, intron 1 of 27)	834	NM_015024	23039	Hs.172685	NM_015024	HPRD:05846	XPO7	EXP7|RANBP16	exportin 7	protein-coding
19-PTNLD28-TUMOR_peak_2165	chr1	33220024	33220227	+	6.55069	NA	intron (NM_020888, intron 1 of 6)	intron (NM_020888, intron 1 of 6)	-11110	NM_001198973	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
19-PTNLD28-TUMOR_peak_29377	chr14	21539358	21539486	+	6.55059	NA	promoter-TSS (NM_001282211)	promoter-TSS (NM_001282211)	-391	NM_001282211	57447	Hs.525205	NM_016250	HPRD:17630	NDRG2	SYLD	NDRG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_106569	chr9	136084510	136084599	+	6.54680	NA	promoter-TSS (NM_014581)	promoter-TSS (NM_014581)	83	NR_110242	29989	Hs.449629	NM_014581	HPRD:05209	OBP2B	LCN14|OBPIIb	odorant binding protein 2B	protein-coding
19-PTNLD28-TUMOR_peak_32109	chr14	102431580	102431696	+	6.54680	NA	intron (NM_001376, intron 1 of 77)	CpG	773	NM_001376	1778	Hs.614080	NM_001376	HPRD:02524	DYNC1H1	DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein, cytoplasmic 1, heavy chain 1	protein-coding
19-PTNLD28-TUMOR_peak_97387	chr8	18871499	18871904	+	6.54680	NA	promoter-TSS (NM_015310)	promoter-TSS (NM_015310)	-505	NM_015310	23362	Hs.434255	NM_015310	HPRD:11462	PSD3	EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_100849	chr8	129040351	129040464	+	6.54680	NA	intron (NR_003367, intron 4 of 7)	intron (NR_003367, intron 4 of 7)	19263	NR_031611	100302170		NR_031611		MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_66562	chr3	10816067	10816194	+	6.54343	NA	Intergenic	LTR16C|LTR|ERVL	-10253	NR_027102	285370	Hs.157613	NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
19-PTNLD28-TUMOR_peak_2005	chr1	31384311	31384415	+	6.54343	NA	Intergenic	Intergenic	-2883	NM_014654	9672	Hs.158287	NM_014654		SDC3	SDCN|SYND3	syndecan 3	protein-coding
19-PTNLD28-TUMOR_peak_58429	chr2	219433880	219434071	+	6.54343	NA	promoter-TSS (NM_020935)	promoter-TSS (NM_020935)	672	NM_001271634	9125	Hs.148767	NM_005444	HPRD:08828	RQCD1	CNOT9|CT129|RCD-1|RCD1	RCD1 required for cell differentiation1 homolog (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_8501	chr1	178920777	178920961	+	6.53850	NA	Intergenic	Intergenic	-74205	NM_014864	9917	Hs.5737	NM_014864	HPRD:13297	FAM20B	gxk1	family with sequence similarity 20, member B	protein-coding
19-PTNLD28-TUMOR_peak_104465	chr9	92052245	92052533	+	6.53850	NA	intron (NM_006378, intron 2 of 17)	intron (NM_006378, intron 2 of 17)	42222	NM_006378	10507	Hs.494406	NM_006378	HPRD:03520	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding
19-PTNLD28-TUMOR_peak_16359	chr10	134773596	134773708	+	6.53850	NA	intron (NR_120627, intron 1 of 1)	intron (NR_120627, intron 1 of 1)	2089	NR_125763	103695432	Hs.680406	NR_125763		LINC01167	TCONS_00018075	long intergenic non-protein coding RNA 1167	ncRNA
19-PTNLD28-TUMOR_peak_40311	chr17	16120431	16120521	+	6.53850	NA	promoter-TSS (NM_004278)	promoter-TSS (NM_004278)	-33	NM_004278	9487	Hs.499793	NM_004278	HPRD:12071	PIGL	CHIME	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding
19-PTNLD28-TUMOR_peak_64402	chr22	20004642	20004730	+	6.53813	NA	promoter-TSS (NM_001670)	promoter-TSS (NM_001670)	163	NM_001283179	128989	Hs.474233	NM_152906	HPRD:13229	TANGO2	C22orf25	transport and golgi organization 2 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44817	chr18	19927064	19927181	+	6.53552	NA	Intergenic	Intergenic	70756	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_106416	chr9	132880448	132880543	+	6.53552	NA	intron (NM_001136557, intron 16 of 19)	MIRb|SINE|MIR	-54362	NM_014286	23413	Hs.642946	NM_014286	HPRD:04500	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
19-PTNLD28-TUMOR_peak_87594	chr6	43484222	43484315	+	6.53552	NA	promoter-TSS (NM_203290)	promoter-TSS (NM_203290)	460	NM_015388	25844	Hs.440950	NM_015388	HPRD:09852	YIPF3	C6orf109|FinGER3|KLIP1|dJ337H4.3	Yip1 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_20257	chr11	78128991	78129271	+	6.53330	NA	promoter-TSS (NM_080491)	promoter-TSS (NM_080491)	-263	NM_080491	9846	Hs.429434	NM_012296	HPRD:05866	GAB2	-	GRB2-associated binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_10642	chr1	228647058	228647146	+	6.53263	NA	TTS (NM_175055)	TTS (NM_175055)	1294	NM_175055	128312	Hs.376691	NM_175055	HPRD:13661	HIST3H2BB	H2Bb	histone cluster 3, H2bb	protein-coding
19-PTNLD28-TUMOR_peak_81582	chr5	112386861	112386960	+	6.53263	NA	intron (NM_002387, intron 13 of 16)	intron (NM_002387, intron 13 of 16)	74503	NM_001242377	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_103836	chr9	75088565	75088670	+	6.53263	NA	Intergenic	Intergenic	-48100	NM_138691	117531	Hs.670211	NM_138691	HPRD:05988	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel-like 1	protein-coding
19-PTNLD28-TUMOR_peak_32296	chr14	105267318	105267494	+	6.53263	NA	intron (NM_001137601, intron 1 of 1)	CpG	473	NM_001137601	100128927	Hs.170853	NM_001137601		ZBTB42	ZNF925	zinc finger and BTB domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_64377	chr22	19897604	19897694	+	6.53112	NA	intron (NM_001282512, intron 8 of 11)	intron (NM_001282512, intron 8 of 11)	-31614	NM_000754	1312	Hs.370408	NM_000754	HPRD:00284	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_41999	chr17	45982888	45983096	+	6.53112	NA	intron (NR_103856, intron 2 of 2)	intron (NR_103856, intron 2 of 2)	9476	NM_003110	6668	Hs.514276	NM_003110	HPRD:03481	SP2	-	Sp2 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_38704	chr16	74483125	74483240	+	6.53112	NA	non-coding (NR_027265, exon 21 of 21)	non-coding (NR_027265, exon 21 of 21)	-27814	NM_001011880	497190	Hs.454670	NM_001011880	HPRD:17419	CLEC18B	MRCL2	C-type lectin domain family 18, member B	protein-coding
19-PTNLD28-TUMOR_peak_6952	chr1	153377351	153377455	+	6.53112	NA	Intergenic	Intergenic	-11597	NM_176823	338324	Hs.442337	NM_176823	HPRD:15290	S100A7A	NICE-2|S100A15|S100A7L1|S100A7f	S100 calcium binding protein A7A	protein-coding
19-PTNLD28-TUMOR_peak_13447	chr10	48412813	48412957	+	6.53112	NA	TTS (NM_016204)	TTS (NM_016204)	3987	NM_016204	2658	Hs.279463	NM_016204	HPRD:05492	GDF2	BMP-9|BMP9|HHT5	growth differentiation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_55729	chr2	131721593	131721722	+	6.53112	NA	intron (NM_032995, intron 3 of 11)	CpG	46687	NM_032995	50649	Hs.469935	NM_015320	HPRD:05559	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_63978	chr21	46199416	46199674	+	6.53112	NA	intron (NM_001202489, intron 1 of 3)	intron (NM_001202489, intron 1 of 3)	22206	NM_003343	7327	Hs.529420	NM_003343	HPRD:04387	UBE2G2	UBC7	ubiquitin-conjugating enzyme E2G 2	protein-coding
19-PTNLD28-TUMOR_peak_64705	chr22	24123777	24123972	+	6.53112	NA	intron (NM_005940, intron 6 of 7)	MIRb|SINE|MIR	-5276	NM_003073	6598	Hs.534350	NM_003073	HPRD:03364	SMARCB1	BAF47|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
19-PTNLD28-TUMOR_peak_4603	chr1	85601263	85601402	+	6.53112	NA	Intergenic	Intergenic	1855	NR_039619	100616481		NR_039619	miRBase:MI0016760	MIR4423	-	microRNA 4423	ncRNA
19-PTNLD28-TUMOR_peak_10404	chr1	224872795	224872895	+	6.53112	NA	intron (NM_152495, intron 3 of 5)	intron (NM_152495, intron 3 of 5)	68666	NM_152495	149111	Hs.731723	NM_152495	HPRD:08799	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
19-PTNLD28-TUMOR_peak_16260	chr10	130935339	130935464	+	6.53112	NA	Intergenic	Intergenic	-330053	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_92545	chr7	50860535	50860645	+	6.53112	NA	intron (NM_001001555, intron 1 of 16)	intron (NM_001001555, intron 1 of 16)	569	NM_001001555	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_11423	chr1	244997231	244997324	+	6.53008	NA	Intergenic	Intergenic	-1362	NM_198076	116228	Hs.411490	NM_198076	HPRD:13307	COX20	FAM36A	COX20 cytochrome C oxidase assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_86851	chr6	33534647	33534802	+	6.53008	NA	Intergenic	Intergenic	13346	NM_001188	578	Hs.485139	NM_001188	HPRD:02744	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
19-PTNLD28-TUMOR_peak_35393	chr15	98536529	98536839	+	6.53008	NA	Intergenic	Intergenic	32751	NM_183376	91947	Hs.6093	NM_183376	HPRD:10664	ARRDC4	-	arrestin domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_19183	chr11	64577331	64577694	+	6.53008	NA	exon (NM_130804, exon 3 of 11)	exon (NM_130804, exon 3 of 11)	523	NM_130800	4221	Hs.423348	NM_000244	HPRD:00564	MEN1	MEAI|SCG2	multiple endocrine neoplasia I	protein-coding
19-PTNLD28-TUMOR_peak_93201	chr7	73160765	73160989	+	6.52462	NA	Intergenic	Intergenic	-7680	NM_001301058	83451	Hs.647045	NM_148912	HPRD:15658	ABHD11	WBSCR21	abhydrolase domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_31275	chr14	74968051	74968156	+	6.52449	NA	intron (NM_000428, intron 35 of 35)	intron (NM_000428, intron 35 of 35)	7680	NM_194279	122961	Hs.291079	NM_194279		ISCA2	HBLD1|ISA2|c14_5557	iron-sulfur cluster assembly 2	protein-coding
19-PTNLD28-TUMOR_peak_21344	chr11	115514317	115514446	+	6.52449	NA	Intergenic	Intergenic	116537	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_47164	chr19	10111059	10111147	+	6.52449	NA	intron (NM_015719, intron 8 of 66)	L2|LINE|L2	10044	NM_015719	50509	Hs.235368	NM_015719	HPRD:00369	COL5A3	-	collagen, type V, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_76632	chr4	112639201	112639310	+	6.52449	NA	Intergenic	Intergenic	-427298	NM_152400	132720	Hs.23439	NM_152400		C4orf32	-	chromosome 4 open reading frame 32	protein-coding
19-PTNLD28-TUMOR_peak_56638	chr2	161619039	161619134	+	6.52449	NA	Intergenic	L1PA3|LINE|L1	-268768	NM_002897	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38032	chr16	57359493	57359624	+	6.52449	NA	Intergenic	AluJr4|SINE|Alu	-33137	NM_002990	6367	Hs.534347	NM_002990	HPRD:04263	CCL22	ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1	chemokine (C-C motif) ligand 22	protein-coding
19-PTNLD28-TUMOR_peak_52445	chr2	43836603	43836691	+	6.52449	NA	Intergenic	Intergenic	-13462	NR_073394	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_98363	chr8	40704910	40705017	+	6.52449	NA	intron (NM_001135731, intron 1 of 5)	intron (NM_001135731, intron 1 of 5)	50380	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_45979	chr18	56751538	56751727	+	6.52449	NA	Intergenic	Intergenic	48661	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53208	chr2	67212017	67212310	+	6.52449	NA	Intergenic	Intergenic	-62541	NR_110600	102724321	Hs.146803	NR_110600		LOC102724321	-	uncharacterized LOC102724321	ncRNA
19-PTNLD28-TUMOR_peak_50522	chr19	58250109	58250197	+	6.52449	NA	Intergenic	LTR13|LTR|ERVK	-8011	NM_173632	284309	Hs.720254	NM_173632	HPRD:08237	ZNF776	-	zinc finger protein 776	protein-coding
19-PTNLD28-TUMOR_peak_83333	chr5	152705368	152705473	+	6.52449	NA	Intergenic	L1PA2|LINE|L1	-164664	NM_001258020	2890	Hs.519693	NM_000827	HPRD:00695	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1	glutamate receptor, ionotropic, AMPA 1	protein-coding
19-PTNLD28-TUMOR_peak_24618	chr12	56052596	56052684	+	6.52449	NA	Intergenic	MIRc|SINE|MIR	21964	NM_206899	121130	Hs.554551	NM_206899	HPRD:14895	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor, family 10, subfamily P, member 1	protein-coding
19-PTNLD28-TUMOR_peak_105257	chr9	111297131	111297271	+	6.52449	NA	Intergenic	LTR33A|LTR|ERVL	321074	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_62174	chr20	54823165	54823310	+	6.52449	NA	promoter-TSS (NM_019888)	promoter-TSS (NM_019888)	-551	NM_019888	4159	Hs.248018	NM_019888	HPRD:01115	MC3R	BMIQ9|MC3|MC3-R|OB20|OQTL	melanocortin 3 receptor	protein-coding
19-PTNLD28-TUMOR_peak_71453	chr3	143455642	143455764	+	6.52449	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	111670	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_84023	chr5	172347569	172347708	+	6.52449	NA	intron (NM_001031711, intron 5 of 9)	intron (NM_001031711, intron 5 of 9)	38140	NR_026683	100268168	Hs.519766	NR_026682	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
19-PTNLD28-TUMOR_peak_5099	chr1	97611229	97611379	+	6.52449	NA	intron (NM_000110, intron 20 of 22)	intron (NM_000110, intron 20 of 22)	49825	NR_046590	100873932	Hs.682651	NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_4996	chr1	94607770	94607938	+	6.52449	NA	Intergenic	Intergenic	-21149	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_5317	chr1	109164319	109164407	+	6.52449	NA	intron (NM_001010883, intron 5 of 10)	intron (NM_001010883, intron 5 of 10)	39381	NM_001102592	113802	Hs.7962	NM_144584	HPRD:08086	HENMT1	C1orf59|HEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding
19-PTNLD28-TUMOR_peak_38503	chr16	69766313	69766531	+	6.52449	NA	Intergenic	MLT2B1|LTR|ERVL	-5851	NM_001286137	1728	Hs.406515	NM_000903	HPRD:00518	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	NAD(P)H dehydrogenase, quinone 1	protein-coding
19-PTNLD28-TUMOR_peak_70897	chr3	132988289	132988446	+	6.52449	NA	intron (NM_001282865, intron 2 of 3)	intron (NM_001282865, intron 2 of 3)	-12402	NR_110812	101927455	Hs.570550	NR_110812	ENSG00000251011	TMEM108-AS1	-	TMEM108 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10080	chr1	218633867	218634086	+	6.52449	NA	Intergenic	Intergenic	18008	NR_125715	103611157	Hs.133379	NR_125715		TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_82024	chr5	129558272	129558662	+	6.52449	NA	Intergenic	Charlie8|DNA|hAT-Charlie	317944	NM_175856	337876	Hs.213137	NM_175856	HPRD:16766	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_8303	chr1	174788231	174788356	+	6.52449	NA	intron (NM_014857, intron 19 of 20)	AluJb|SINE|Alu	19258	NM_001243765	9910	Hs.585378	NM_014857	HPRD:16464	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_89991	chr6	150813772	150813920	+	6.52449	NA	Intergenic	Intergenic	-107153	NM_001029884	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
19-PTNLD28-TUMOR_peak_40361	chr17	17089436	17089606	+	6.52449	NA	3' UTR (NM_201274, exon 24 of 24)	3' UTR (NM_201274, exon 24 of 24)	20125	NM_178836	201164	Hs.729079	NM_178836	HPRD:14126	PLD6	ZUC	phospholipase D family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_91637	chr7	23725514	23725732	+	6.52449	NA	intron (NM_199136, intron 2 of 6)	intron (NM_199136, intron 2 of 6)	5890	NM_001300932	340277	Hs.592178	NM_199136	HPRD:14706	FAM221A	C7orf46	family with sequence similarity 221, member A	protein-coding
19-PTNLD28-TUMOR_peak_99664	chr8	99451672	99451876	+	6.52449	NA	Intergenic	Intergenic	12524	NM_020697	3788	Hs.388045	NM_020697		KCNS2	KV9.2	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2	protein-coding
19-PTNLD28-TUMOR_peak_94090	chr7	97234345	97234445	+	6.52449	NA	Intergenic	Intergenic	-126876	NM_003182	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_69434	chr3	99806074	99806323	+	6.52449	NA	intron (NM_182909, intron 1 of 5)	L1ME1|LINE|L1	27159	NM_182909	11259	Hs.104672	NM_014890	HPRD:16832	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_8864	chr1	185378650	185378761	+	6.52449	NA	Intergenic	Intergenic	-74534	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule-associated protein 1 light chain 3 beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_38899	chr16	79966626	79966760	+	6.52449	NA	Intergenic	Intergenic	137547	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_105729	chr9	119833812	119833982	+	6.52449	NA	intron (NM_014010, intron 4 of 21)	L1PA2|LINE|L1	109583	NR_003708	100124538	Hs.693445	NR_003708		SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
19-PTNLD28-TUMOR_peak_73135	chr3	189444174	189444396	+	6.52449	NA	intron (NM_003722, intron 1 of 13)	intron (NM_003722, intron 1 of 13)	-63164	NM_001114980	8626	Hs.137569	NM_003722	HPRD:04469	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
19-PTNLD28-TUMOR_peak_27141	chr12	128872334	128872623	+	6.52449	NA	intron (NM_001136103, intron 1 of 8)	intron (NM_001136103, intron 1 of 8)	93841	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_43981	chr17	79519342	79519732	+	6.52373	NA	promoter-TSS (NM_025161)	promoter-TSS (NM_025161)	-108	NM_025161	80233	Hs.313905	NM_025161	HPRD:07982	C17orf70	FAAP100	chromosome 17 open reading frame 70	protein-coding
19-PTNLD28-TUMOR_peak_22924	chr12	8374004	8374130	+	6.52192	NA	3' UTR (NM_018088, exon 7 of 7)	3' UTR (NM_018088, exon 7 of 7)	6147	NM_018088	55138	Hs.196086	NM_018088	HPRD:07672	FAM90A1	-	family with sequence similarity 90, member A1	protein-coding
19-PTNLD28-TUMOR_peak_75592	chr4	69772205	69772343	+	6.52192	NA	Intergenic	HERV3-int|LTR|ERV1	45235	NM_024743	79799	Hs.122583	NM_024743	HPRD:08646	UGT2A3	-	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding
19-PTNLD28-TUMOR_peak_97309	chr8	16884576	16884676	+	6.52192	NA	promoter-TSS (NM_181723)	promoter-TSS (NM_181723)	-121	NM_181723	286097	Hs.403594	NM_181723	HPRD:13264	MICU3	EFHA2	mitochondrial calcium uptake family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_101515	chr8	143190926	143191055	+	6.52192	NA	Intergenic	Intergenic	-66710	NR_039682	100616268		NR_039682	miRBase:MI0016823	MIR4472-1	-	microRNA 4472-1	ncRNA
19-PTNLD28-TUMOR_peak_46513	chr19	770383	770550	+	6.52192	NA	Intergenic	Intergenic	19320	NM_173481	126353	Hs.439180	NM_173481	HPRD:12695	MISP	C19orf21	mitotic spindle positioning	protein-coding
19-PTNLD28-TUMOR_peak_2569	chr1	38618567	38618676	+	6.52192	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	61818	NR_038928	339442	Hs.434245	NR_038928	ENSG00000237290	LINC01343	-	long intergenic non-protein coding RNA 1343	ncRNA
19-PTNLD28-TUMOR_peak_48195	chr19	20348577	20348742	+	6.52192	NA	Intergenic	AluYc|SINE|Alu	70636	NM_052852	90649	Hs.590991	NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
19-PTNLD28-TUMOR_peak_1211	chr1	19536186	19536298	+	6.52192	NA	intron (NM_020765, intron 1 of 105)	CpG	504	NM_020765	23352	Hs.148078	NM_020765	HPRD:10184	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
19-PTNLD28-TUMOR_peak_66203	chr3	3107674	3107780	+	6.52192	NA	TTS (NM_000564)	TTS (NM_000564)	-4898	NR_046554	100873975	Hs.581502	NR_046554		CNTN4-AS1	-	CNTN4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_77261	chr4	141158846	141159296	+	6.52192	NA	Intergenic	Intergenic	-19369	NM_032547	60592	Hs.480815	NM_032547	HPRD:18027	SCOC	SCOCO	short coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_48726	chr19	36347479	36347577	+	6.52192	NA	promoter-TSS (NM_199179)	promoter-TSS (NM_199179)	-282	NM_199180	84063	Hs.145729	NM_032123	HPRD:08473	KIRREL2	FILTRIN|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_101540	chr8	143663745	143663920	+	6.52192	NA	Intergenic	Intergenic	32001	NM_015193	23237	Hs.40888	NM_015193		ARC	Arg3.1	activity-regulated cytoskeleton-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_235	chr1	2391239	2391514	+	6.52192	NA	Intergenic	Intergenic	-16378	NM_014638	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-eta2|PLCL4|PLCeta2	phospholipase C, eta 2	protein-coding
19-PTNLD28-TUMOR_peak_57791	chr2	201982117	201982297	+	6.52173	NA	intron (NM_001202517, intron 1 of 8)	intron (NM_001202517, intron 1 of 8)	-1062	NM_001127183	8837	Hs.390736	NM_003879	HPRD:04671	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD-like apoptosis regulator	protein-coding
19-PTNLD28-TUMOR_peak_48876	chr19	38757375	38757578	+	6.52084	NA	intron (NM_001166103, intron 1 of 5)	intron (NM_001166103, intron 1 of 5)	2378	NM_021102	10653	Hs.31439	NM_021102	HPRD:05495	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type, 2	protein-coding
19-PTNLD28-TUMOR_peak_5439	chr1	110523301	110523541	+	6.52084	NA	Intergenic	Intergenic	-3966	NM_006621	10768	Hs.743973	NM_006621	HPRD:07613	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88781	chr6	91296416	91296535	+	6.51982	NA	intron (NM_145333, intron 1 of 14)	CpG	545	NM_145333	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_31723	chr14	92505819	92505920	+	6.51982	NA	intron (NM_004239, intron 1 of 20)	intron (NM_004239, intron 1 of 20)	534	NM_004239	9321	Hs.632339	NM_004239	HPRD:05143	TRIP11	ACG1A|CEV14|GMAP-210|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
19-PTNLD28-TUMOR_peak_57207	chr2	178939667	178939823	+	6.51982	NA	intron (NM_001077197, intron 2 of 20)	LTR33|LTR|ERVL	-2263	NM_016953	50940	Hs.570273	NM_016953	HPRD:05391	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
19-PTNLD28-TUMOR_peak_98694	chr8	49838291	49838390	+	6.51982	NA	Intergenic	Intergenic	-4341	NM_003068	6591	Hs.360174	NM_003068	HPRD:03689	SNAI2	SLUG|SLUGH1|SNAIL2|WS2D	snail family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_35315	chr15	93376021	93376122	+	6.51982	NA	Intergenic	AluSx|SINE|Alu	37357	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_81682	chr5	115420147	115420288	+	6.51982	NA	promoter-TSS (NM_016144)	promoter-TSS (NM_016144)	-510	NM_016144	51397	Hs.483136	NM_016144	HPRD:16734	COMMD10	PTD002	COMM domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_39973	chr17	7284279	7284464	+	6.51982	NA	promoter-TSS (NM_001251902)	promoter-TSS (NM_001251902)	78	NM_003985	8711	Hs.203420	NM_003985	HPRD:09730	TNK1	-	tyrosine kinase, non-receptor, 1	protein-coding
19-PTNLD28-TUMOR_peak_97539	chr8	21946973	21947061	+	6.51982	NA	intron (NM_022749, intron 1 of 16)	(CCCCG)n|Simple_repeat|Simple_repeat	303	NM_022749	64760	Hs.491223	NM_022749	HPRD:17951	FAM160B2	RAI16	family with sequence similarity 160, member B2	protein-coding
19-PTNLD28-TUMOR_peak_35314	chr15	93375759	93375909	+	6.51982	NA	Intergenic	Intergenic	37120	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_64520	chr22	21485318	21485564	+	6.51921	NA	Intergenic	Intergenic	28136	NR_037566	400892	Hs.745077	NM_207474		BCRP2	BCR-2|BCR2|BCRL2	breakpoint cluster region pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_50786	chr2	1554600	1554702	+	6.51921	NA	Intergenic	Intergenic	136471	NM_175721	7173	Hs.467554	NM_000547	HPRD:06000	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
19-PTNLD28-TUMOR_peak_39739	chr17	3461032	3461206	+	6.51824	NA	5' UTR (NM_001258205, exon 1 of 18)	5' UTR (NM_001258205, exon 1 of 18)	170	NM_145068	162514	Hs.446255	NM_145068	HPRD:06141	TRPV3	OLMS|VRL3	transient receptor potential cation channel, subfamily V, member 3	protein-coding
19-PTNLD28-TUMOR_peak_73603	chr3	196571491	196571579	+	6.51824	NA	Intergenic	LTR8|LTR|ERV1	-23192	NM_152699	205564	Hs.240770	NM_152699	HPRD:10222	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
19-PTNLD28-TUMOR_peak_89989	chr6	150774061	150774263	+	6.51824	NA	Intergenic	Intergenic	84134	NM_001164695	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_36631	chr16	19499319	19499409	+	6.51824	NA	intron (NM_001105249, intron 17 of 20)	MER74A|LTR|ERVL	31592	NM_024780	79838	Hs.115838	NM_024780	HPRD:15516	TMC5	-	transmembrane channel-like 5	protein-coding
19-PTNLD28-TUMOR_peak_39028	chr16	82663322	82663600	+	6.51824	NA	intron (NM_001220489, intron 1 of 12)	intron (NM_001220489, intron 1 of 12)	3062	NM_001220488	1012	Hs.654386	NM_001257	HPRD:03219	CDH13	CDHH|P105	cadherin 13	protein-coding
19-PTNLD28-TUMOR_peak_33896	chr15	63249400	63249558	+	6.51824	NA	Intergenic	Intergenic	-85359	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_56765	chr2	165849555	165849643	+	6.51824	NA	Intergenic	Intergenic	-37564	NM_173512	151258	Hs.658702	NM_173512	HPRD:08267	SLC38A11	AVT2	solute carrier family 38, member 11	protein-coding
19-PTNLD28-TUMOR_peak_78765	chr5	6745887	6745990	+	6.51824	NA	promoter-TSS (NM_001171806)	promoter-TSS (NM_001171806)	-163	NM_001171806	11044	Hs.481542	NM_006999	HPRD:09239	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	PAP associated domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_3613	chr1	54453640	54453926	+	6.51824	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	30076	NM_001276395	388633	Hs.439583	NM_001010978		LDLRAD1	-	low density lipoprotein receptor class A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_24097	chr12	49381994	49382206	+	6.51824	NA	Intergenic	Intergenic	9864	NM_005430	7471	Hs.248164	NM_005430		WNT1	BMND16|INT1|OI15	wingless-type MMTV integration site family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_8566	chr1	180530093	180530262	+	6.51824	NA	intron (NR_125716, intron 1 of 2)	intron (NR_125716, intron 1 of 2)	2067	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_22219	chr11	130760431	130760704	+	6.51824	NA	intron (NM_001301089, intron 8 of 10)	L2c|LINE|L2	-20425	NR_125382	103611081	Hs.430300	NR_125382		LOC103611081	-	uncharacterized LOC103611081	ncRNA
19-PTNLD28-TUMOR_peak_72204	chr3	168594286	168594460	+	6.51824	NA	Intergenic	Intergenic	-25360	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LOC100507661	-	uncharacterized LOC100507661	ncRNA
19-PTNLD28-TUMOR_peak_41662	chr17	41910056	41910247	+	6.51824	NA	non-coding (NR_003562, exon 2 of 19)	non-coding (NR_003562, exon 2 of 19)	396	NM_001932	4356	Hs.396566	NM_001932	HPRD:03069	MPP3	DLG3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	protein-coding
19-PTNLD28-TUMOR_peak_13947	chr10	68990561	68990660	+	6.51824	NA	intron (NM_001291133, intron 6 of 8)	L1PA3|LINE|L1	218586	NR_111909	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_68822	chr3	65841523	65841667	+	6.51824	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	-37896	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92418	chr7	47311521	47311667	+	6.51824	NA	Intergenic	L1MDa|LINE|L1	310148	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_17832	chr11	32170512	32170719	+	6.51824	NA	Intergenic	HERV4_I-int|LTR|ERV1	58138	NM_002901	5954	Hs.97887	NM_002901	HPRD:04111	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1, EF-hand calcium binding domain	protein-coding
19-PTNLD28-TUMOR_peak_58498	chr2	220289295	220289383	+	6.51824	NA	intron (NM_001927, intron 7 of 8)	intron (NM_001927, intron 7 of 8)	6240	NM_001927	1674	Hs.594952	NM_001927	HPRD:00514	DES	CSM1|CSM2|LGMD2R	desmin	protein-coding
19-PTNLD28-TUMOR_peak_80217	chr5	61808520	61808656	+	6.51824	NA	intron (NM_001134779, intron 19 of 29)	SVA_D|Other|Other	-65974	NR_073584	101180901	Hs.482269	NR_073584		IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
19-PTNLD28-TUMOR_peak_26386	chr12	113338088	113338353	+	6.51824	NA	Intergenic	Intergenic	-6519	NM_016816	4938	Hs.524760	NM_002534	HPRD:08879	OAS1	IFI-4|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1, 40/46kDa	protein-coding
19-PTNLD28-TUMOR_peak_24278	chr12	52281760	52281848	+	6.51824	NA	promoter-TSS (NM_001130015)	promoter-TSS (NM_001130015)	11	NM_182608	341405	Hs.433492	NM_182608	HPRD:12465	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
19-PTNLD28-TUMOR_peak_60315	chr20	25370608	25370751	+	6.51715	NA	intron (NM_001042472, intron 1 of 12)	CpG	939	NM_015600	26090	Hs.441550	NM_015600	HPRD:07094	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2	abhydrolase domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_86968	chr6	34760709	34760910	+	6.51715	NA	intron (NM_017754, intron 1 of 20)	intron (NM_017754, intron 1 of 20)	1015	NM_017754	54887	Hs.700656	NM_017754	HPRD:12838	UHRF1BP1	C6orf107|ICBP90|dJ349A12.1	UHRF1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_23266	chr12	16035703	16035858	+	6.51684	NA	intron (NM_007178, intron 1 of 9)	CpG	492	NM_007178	11171	Hs.743971	NM_007178	HPRD:05816	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
19-PTNLD28-TUMOR_peak_65972	chr22	46450019	46450112	+	6.51684	NA	promoter-TSS (NM_018280)	promoter-TSS (NM_018280)	-41	NM_018280	55267	Hs.567529	NM_018280		PRR34	C22orf26	proline rich 34	protein-coding
19-PTNLD28-TUMOR_peak_81552	chr5	111753643	111753738	+	6.51564	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	1320	NM_022140	64097	Hs.584954	NM_022140	HPRD:09939	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
19-PTNLD28-TUMOR_peak_79354	chr5	32582833	32583005	+	6.51001	NA	Intergenic	Intergenic	-2686	NM_006713	10923	Hs.229641	NM_006713	HPRD:02737	SUB1	P15|PC4|p14	SUB1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_92	chr1	993748	993863	+	6.51001	NA	Intergenic	Intergenic	15882	NM_001205252	401934	Hs.568137	NM_001205252		RNF223	-	ring finger protein 223	protein-coding
19-PTNLD28-TUMOR_peak_2481	chr1	37447345	37448180	+	6.51001	NA	intron (NM_000831, intron 1 of 15)	intron (NM_000831, intron 1 of 15)	52082	NM_000831	2899	Hs.128848	NM_000831	HPRD:00691	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate receptor, ionotropic, kainate 3	protein-coding
19-PTNLD28-TUMOR_peak_47517	chr19	13318750	13318904	+	6.51001	NA	exon (NM_001127222, exon 47 of 47)	exon (NM_001127222, exon 47 of 47)	57545	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_42469	chr17	55163739	55163832	+	6.50530	NA	5' UTR (NM_001242902, exon 2 of 12)	5' UTR (NM_001242902, exon 2 of 12)	650	NM_001242902	8165	Hs.463506	NM_003488	HPRD:03905	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A kinase (PRKA) anchor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38405	chr16	68269457	68269685	+	6.50380	NA	exon (NM_024939, exon 2 of 15)	exon (NM_024939, exon 2 of 15)	565	NM_024939	80004	Hs.436585	NM_024939	HPRD:07971	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_72796	chr3	184286892	184287141	+	6.50247	NA	intron (NM_004443, intron 1 of 15)	CpG	7429	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_47343	chr19	11646921	11647025	+	6.49775	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-2606	NM_001299	1264	Hs.465929	NM_001299	HPRD:02884	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1, basic, smooth muscle	protein-coding
19-PTNLD28-TUMOR_peak_45076	chr18	28622452	28623077	+	6.49775	NA	promoter-TSS (NM_024423)	promoter-TSS (NM_024423)	17	NM_001941	1825	Hs.41690	NM_001941	HPRD:02604	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
19-PTNLD28-TUMOR_peak_91236	chr7	7222796	7222920	+	6.49750	NA	intron (NM_020156, intron 1 of 3)	CpG	612	NM_020156	56913	Hs.239666	NM_020156	HPRD:16631	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_56522	chr2	159611938	159612097	+	6.49708	NA	Intergenic	Intergenic	-39812	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_52884	chr2	56561209	56561425	+	6.49708	NA	intron (NM_001080433, intron 2 of 5)	L2a|LINE|L2	-148412	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_34632	chr15	77229154	77229252	+	6.49708	NA	intron (NM_002902, intron 3 of 6)	L1MB2|LINE|L1	5241	NM_001271837	5955	Hs.79088	NM_002902	HPRD:03993	RCN2	E6BP|ERC-55|ERC55|TCBP49	reticulocalbin 2, EF-hand calcium binding domain	protein-coding
19-PTNLD28-TUMOR_peak_100747	chr8	127518794	127518916	+	6.49708	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	51856	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_30481	chr14	56584791	56584893	+	6.49708	NA	promoter-TSS (NM_021255)	promoter-TSS (NM_021255)	-251	NM_021255	57161	Hs.657926	NM_021255	HPRD:17835	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_32509	chr15	22007870	22008007	+	6.49708	NA	Intergenic	Intergenic	8940	NR_024387	646243	Hs.720910	NR_024387		CXADRP2	-	coxsackie virus and adenovirus receptor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_55952	chr2	136889695	136889972	+	6.49708	NA	Intergenic	Intergenic	-14108	NM_003467	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_90161	chr6	155483942	155484060	+	6.49708	NA	intron (NM_012454, intron 6 of 25)	intron (NM_012454, intron 6 of 25)	-54096	NM_001010927	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_95003	chr7	123167790	123167891	+	6.49708	NA	intron (NM_178827, intron 1 of 12)	L1PA3|LINE|L1	5162	NR_104244	154865	Hs.159650	NM_178827	HPRD:08194	IQUB	-	IQ motif and ubiquitin domain containing	protein-coding
19-PTNLD28-TUMOR_peak_63725	chr21	43477175	43477306	+	6.49708	NA	Intergenic	Intergenic	-5828	NM_001199528	89766	Hs.242520	NM_173568	HPRD:08775	UMODL1	-	uromodulin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_10036	chr1	214665869	214665978	+	6.49708	NA	intron (NM_005401, intron 1 of 18)	intron (NM_005401, intron 1 of 18)	59101	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_52373	chr2	43158954	43159155	+	6.49708	NA	Intergenic	Intergenic	107628	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_91822	chr7	30028065	30028277	+	6.49708	NA	intron (NM_001145514, intron 1 of 7)	intron (NM_001145514, intron 1 of 7)	1254	NM_001145515	9805	Hs.520740	NM_014766	HPRD:15304	SCRN1	SES1	secernin 1	protein-coding
19-PTNLD28-TUMOR_peak_99692	chr8	100905369	100905640	+	6.49708	NA	intron (NM_004374, intron 1 of 3)	MIRc|SINE|MIR	738	NM_004374	1345	Hs.351875	NM_004374	HPRD:00494	COX6C	-	cytochrome c oxidase subunit VIc	protein-coding
19-PTNLD28-TUMOR_peak_44781	chr18	18822587	18822843	+	6.49708	NA	intron (NM_001142966, intron 1 of 32)	CpG	512	NM_001142966	80000	Hs.149020	NM_024935	HPRD:11161	GREB1L	C18orf6|KIAA1772	growth regulation by estrogen in breast cancer-like	protein-coding
19-PTNLD28-TUMOR_peak_24931	chr12	63132505	63132647	+	6.49708	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	135110	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_71274	chr3	139925626	139925742	+	6.49708	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	271657	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_90849	chr7	1606851	1606963	+	6.49671	NA	TTS (NM_032302)	TTS (NM_032302)	2722	NM_032302	84262	Hs.446311	NM_032302	HPRD:14404	PSMG3	C7orf48|PAC3	proteasome (prosome, macropain) assembly chaperone 3	protein-coding
19-PTNLD28-TUMOR_peak_50964	chr2	9371173	9371382	+	6.49596	NA	intron (NM_003887, intron 1 of 27)	intron (NM_003887, intron 1 of 27)	24383	NM_003887	8853	Hs.555902	NM_003887	HPRD:04820	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
19-PTNLD28-TUMOR_peak_85177	chr6	7590779	7590945	+	6.49482	NA	intron (NM_152551, intron 1 of 8)	CpG	430	NM_152551	154007	Hs.13366	NM_152551	HPRD:12858	SNRNP48	C6orf151|dJ336K20B.1|dJ512B11.2	small nuclear ribonucleoprotein 48kDa (U11/U12)	protein-coding
19-PTNLD28-TUMOR_peak_43693	chr17	75884107	75884327	+	6.49482	NA	Intergenic	CpG	-4048	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	ncRNA
19-PTNLD28-TUMOR_peak_38248	chr16	66730212	66730447	+	6.49482	NA	exon (NM_181521, exon 1 of 4)	exon (NM_181521, exon 1 of 4)	281	NM_181521	146223	Hs.643961	NM_178818	HPRD:07435	CMTM4	CKLFSF4	CKLF-like MARVEL transmembrane domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_25241	chr12	70759473	70759772	+	6.49482	NA	promoter-TSS (NM_014505)	promoter-TSS (NM_014505)	-440	NM_014505	27345	Hs.525529	NM_014505	HPRD:05564	KCNMB4	-	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding
19-PTNLD28-TUMOR_peak_27571	chr13	27915852	27916114	+	6.49482	NA	Intergenic	Intergenic	71519	NM_206827	387496	Hs.192131	NM_206827	HPRD:17956	RASL11A	-	RAS-like, family 11, member A	protein-coding
19-PTNLD28-TUMOR_peak_25969	chr12	105629241	105629340	+	6.49482	NA	intron (NM_001251904, intron 1 of 20)	MIR|SINE|MIR	718	NM_018171	55198	Hs.506603	NM_018171	HPRD:06945	APPL2	DIP13B	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding
19-PTNLD28-TUMOR_peak_88130	chr6	56707808	56708002	+	6.49482	NA	exon (NM_183380, exon 1 of 94)	exon (NM_183380, exon 1 of 94)	558	NM_183380	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_30731	chr14	64320075	64320248	+	6.49436	NA	intron (NM_182914, intron 1 of 115)	CpG	478	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_23947	chr12	46765209	46765375	+	6.49436	NA	intron (NM_018976, intron 1 of 15)	CpG	1353	NM_018976	54407	Hs.221847	NM_018976	HPRD:05535	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38, member 2	protein-coding
19-PTNLD28-TUMOR_peak_38523	chr16	70098709	70098899	+	6.49436	NA	intron (NR_003610, intron 1 of 25)	intron (NR_003610, intron 1 of 25)	1047	NR_003610	283970	Hs.513695	NM_199134	ENSG00000196696	PDXDC2P	NPIP|PDXDC2	pyridoxal-dependent decarboxylase domain containing 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_2631	chr1	39620542	39620784	+	6.49436	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	70824	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_36761	chr16	21869887	21870043	+	6.49381	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-39470	NR_003370	730092	Hs.31290	NR_003370		RRN3P1	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_94670	chr7	105295593	105295697	+	6.49307	NA	intron (NM_138495, intron 2 of 9)	intron (NM_138495, intron 2 of 9)	23964	NM_138495	222255	Hs.745056	NM_020725	HPRD:12508	ATXN7L1	ATXN7L4	ataxin 7-like 1	protein-coding
19-PTNLD28-TUMOR_peak_720	chr1	10856707	10856868	+	6.49307	NA	promoter-TSS (NM_001079843)	promoter-TSS (NM_001079843)	-54	NM_017766	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_48503	chr19	32836643	32836785	+	6.49307	NA	intron (NM_014910, intron 1 of 5)	CpG	200	NM_001136156	22847	Hs.205392	NM_014910	HPRD:11722	ZNF507	-	zinc finger protein 507	protein-coding
19-PTNLD28-TUMOR_peak_60560	chr20	31870847	31870949	+	6.49307	NA	promoter-TSS (NM_033197)	promoter-TSS (NM_033197)	-43	NM_033197	92747	Hs.65551	NM_033197	HPRD:12740	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_30311	chr14	52821761	52821849	+	6.49307	NA	Intergenic	Intergenic	40789	NM_000956	5732	Hs.2090	NM_000956	HPRD:08905	PTGER2	EP2	prostaglandin E receptor 2 (subtype EP2), 53kDa	protein-coding
19-PTNLD28-TUMOR_peak_9741	chr1	206635310	206635398	+	6.49211	NA	3' UTR (NM_015326, exon 20 of 20)	3' UTR (NM_015326, exon 20 of 20)	-8232	NM_001193321	9641	Hs.321045	NM_014002	HPRD:05442	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	protein-coding
19-PTNLD28-TUMOR_peak_41217	chr17	36433368	36433466	+	6.49211	NA	Intergenic	Intergenic	-19572	NM_001278279	84311	Hs.537279	NM_032351	HPRD:14764	MRPL45	L45mt|MRP-L45	mitochondrial ribosomal protein L45	protein-coding
19-PTNLD28-TUMOR_peak_58893	chr2	233741235	233741602	+	6.49211	NA	TTS (NM_206895)	TTS (NM_206895)	6424	NM_206895	389084	Hs.657509	NM_206895	HPRD:15620	C2orf82	UNQ830	chromosome 2 open reading frame 82	protein-coding
19-PTNLD28-TUMOR_peak_30813	chr14	65362096	65362440	+	6.49211	NA	Intergenic	SVA_F|Other|Other	-18811	NM_001204064	91612	Hs.731537	NM_145165	HPRD:12262	CHURC1	C14orf52|chch	churchill domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30448	chr14	55912956	55913090	+	6.49211	NA	Intergenic	Intergenic	-5760	NM_199047	387332	Hs.528278	NM_199047		TBPL2	TBP2|TRF3	TATA box binding protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_2679	chr1	40204920	40205029	+	6.49211	NA	intron (NM_203456, intron 1 of 9)	intron (NM_203456, intron 1 of 9)	457	NM_203456	10450	Hs.524690	NM_006112	HPRD:03893	PPIE	CYP-33|CYP33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding
19-PTNLD28-TUMOR_peak_29142	chr13	113622700	113622794	+	6.49211	NA	promoter-TSS (NM_001112732)	promoter-TSS (NM_001112732)	205	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32546	chr15	22693013	22693134	+	6.49211	NA	Intergenic	CpG	-17832	NR_039732	100616223		NR_039732	miRBase:MI0016873	MIR4509-1	-	microRNA 4509-1	ncRNA
19-PTNLD28-TUMOR_peak_48837	chr19	38269411	38269499	+	6.49211	NA	intron (NM_001172690, intron 1 of 4)	intron (NM_001172690, intron 1 of 4)	775	NM_001172691	126231	Hs.531262	NM_152360	HPRD:15852	ZNF573	-	zinc finger protein 573	protein-coding
19-PTNLD28-TUMOR_peak_53489	chr2	73439743	73439833	+	6.49211	NA	Intergenic	Intergenic	-1578	NM_006062	10322	Hs.631882	NM_006062	HPRD:18080	SMYD5	NN8-4AG|RAI15|RRG1|ZMYND23	SMYD family member 5	protein-coding
19-PTNLD28-TUMOR_peak_26793	chr12	122244546	122244670	+	6.48964	NA	intron (NM_015048, intron 3 of 16)	intron (NM_015048, intron 3 of 16)	1970	NM_015048	23067	Hs.507122	NM_015048	ENSG00000139718	SETD1B	KMT2G|Set1B	SET domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_69762	chr3	111698205	111698312	+	6.48964	NA	intron (NR_073571, intron 1 of 2)	intron (NR_073571, intron 1 of 2)	535	NR_073570	55347	Hs.477115	NM_018394	HPRD:07751	ABHD10	-	abhydrolase domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_43081	chr17	65714572	65714692	+	6.48964	NA	intron (NM_015462, intron 1 of 17)	intron (NM_015462, intron 1 of 17)	571	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_59657	chr20	5108310	5108406	+	6.48964	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	951	NM_003818	8760	Hs.126857	NM_003818	HPRD:09150	CDS2	-	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding
19-PTNLD28-TUMOR_peak_60496	chr20	31071146	31071395	+	6.48964	NA	5' UTR (NM_080616, exon 1 of 8)	5' UTR (NM_080616, exon 1 of 8)	115	NM_080616	140688	Hs.516978	NM_080616	HPRD:10728	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4-like	protein-coding
19-PTNLD28-TUMOR_peak_94206	chr7	98976993	98977123	+	6.48715	NA	intron (NM_005720, intron 1 of 9)	intron (NM_005720, intron 1 of 9)	4760	NM_005720	10095	Hs.489284	NM_005720	HPRD:10366	ARPC1B	ARC41|p40-ARC|p41-ARC	actin related protein 2/3 complex, subunit 1B, 41kDa	protein-coding
19-PTNLD28-TUMOR_peak_90602	chr6	168960280	168960632	+	6.48210	NA	intron (NM_022138, intron 7 of 12)	intron (NM_022138, intron 7 of 12)	118625	NM_001166412	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_83868	chr5	170171612	170171797	+	6.48002	NA	Intergenic	CpG	-39019	NM_001291985	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_84293	chr5	176739794	176740116	+	6.48002	NA	promoter-TSS (NM_031300)	promoter-TSS (NM_031300)	-663	NM_001142935	83463	Hs.743332	NM_031300	HPRD:14791	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
19-PTNLD28-TUMOR_peak_39199	chr16	85549839	85549927	+	6.48002	NA	Intergenic	Intergenic	-95146	NM_001134473	23199	Hs.461647	NM_014615	HPRD:11066	GSE1	KIAA0182	Gse1 coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_70738	chr3	129414243	129414331	+	6.47901	NA	intron (NM_001017395, intron 3 of 5)	THE1C|LTR|ERVL-MaLR	-6712	NR_033361	23023	Hs.477547	NM_015008	HPRD:15518	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
19-PTNLD28-TUMOR_peak_47819	chr19	16558311	16558464	+	6.47901	NA	intron (NM_001258374, intron 1 of 23)	AluSx1|SINE|Alu	24436	NM_001258374	58513	Hs.654639	NM_021235	HPRD:09445	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
19-PTNLD28-TUMOR_peak_96288	chr7	150176248	150176359	+	6.47867	NA	3' UTR (NM_175571, exon 5 of 5)	3' UTR (NM_175571, exon 5 of 5)	28341	NM_175571	155038	Hs.647121	NM_175571	HPRD:13577	GIMAP8	IAN-9|IAN6|IAN9|IANT|hIAN6	GTPase, IMAP family member 8	protein-coding
19-PTNLD28-TUMOR_peak_25721	chr12	97375571	97375697	+	6.47867	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	74390	NM_001135175	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_51316	chr2	16660203	16660291	+	6.47867	NA	Intergenic	Intergenic	186887	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_26254	chr12	110547289	110547466	+	6.47867	NA	Intergenic	Intergenic	-14763	NM_014055	28981	Hs.528382	NM_014055	HPRD:09266	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1	intraflagellar transport 81	protein-coding
19-PTNLD28-TUMOR_peak_106767	chr9	139595383	139595644	+	6.47867	NA	Intergenic	LTR43|LTR|ERV1	-11511	NM_152421	138311	Hs.741305	NM_152421		FAM69B	C9orf136|pp6977	family with sequence similarity 69, member B	protein-coding
19-PTNLD28-TUMOR_peak_53244	chr2	68202514	68202631	+	6.47867	NA	Intergenic	Intergenic	87587	NM_173177	10438	Hs.602900	NM_006333		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
19-PTNLD28-TUMOR_peak_80972	chr5	81101088	81101176	+	6.47867	NA	Intergenic	L1MA5A|LINE|L1	-54060	NM_001256736	23635	Hs.102735	NM_012446		SSBP2	HSPC116|SOSS-B2	single-stranded DNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_69499	chr3	102452731	102452955	+	6.47867	NA	Intergenic	Intergenic	298984	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_26319	chr12	111750593	111750681	+	6.47867	NA	intron (NM_015267, intron 16 of 21)	L2c|LINE|L2	8691	NR_106818	102465455		NR_106818		MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
19-PTNLD28-TUMOR_peak_60264	chr20	24747489	24747667	+	6.47867	NA	Intergenic	Intergenic	-182288	NM_003650	8530	Hs.143212	NM_003650	HPRD:04458	CST7	CMAP	cystatin F (leukocystatin)	protein-coding
19-PTNLD28-TUMOR_peak_77715	chr4	154713570	154713687	+	6.47867	NA	Intergenic	CpG	-3400	NM_003013	6423	Hs.481022	NM_003013	HPRD:16041	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled-related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_70671	chr3	128770702	128770869	+	6.47867	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-8825	NM_000174	2815	Hs.1144	NM_000174	HPRD:01432	GP9	CD42a|GPIX	glycoprotein IX (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_63316	chr21	35948342	35948574	+	6.47867	NA	intron (NM_004414, intron 1 of 3)	MIR3|SINE|MIR	37684	NM_001285389	1827	Hs.282326	NM_004414	HPRD:04226	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
19-PTNLD28-TUMOR_peak_47161	chr19	10041671	10041778	+	6.47867	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	5346	NM_058164	93145	Hs.169743	NM_058164	HPRD:10127	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
19-PTNLD28-TUMOR_peak_91724	chr7	26634079	26634396	+	6.47867	NA	Intergenic	Intergenic	-43253	NM_001145531	285941	Hs.413394	NM_001145531	ENSG00000222004	C7orf71	-	chromosome 7 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_87640	chr6	43978657	43978745	+	6.47867	NA	Intergenic	Intergenic	10364	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_49854	chr19	50073552	50073684	+	6.47867	NA	intron (NM_001270960, intron 1 of 8)	intron (NM_001270960, intron 1 of 8)	10211	NM_001270960	51070	Hs.7236	NM_015953	HPRD:17642	NOSIP	-	nitric oxide synthase interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_14609	chr10	82049356	82049544	+	6.47867	NA	promoter-TSS (NM_000429)	promoter-TSS (NM_000429)	-16	NM_000429	4143	Hs.282670	NM_000429	HPRD:02013	MAT1A	MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_18756	chr11	59304722	59304984	+	6.47839	NA	Intergenic	Intergenic	22467	NM_001004711	390199	Hs.553757	NM_001004711	HPRD:17728	OR4D9	OR11-253	olfactory receptor, family 4, subfamily D, member 9	protein-coding
19-PTNLD28-TUMOR_peak_23624	chr12	31424924	31425100	+	6.47839	NA	Intergenic	Intergenic	-52238	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
19-PTNLD28-TUMOR_peak_103931	chr9	78638746	78639059	+	6.47839	NA	intron (NR_120409, intron 4 of 19)	intron (NR_120409, intron 4 of 19)	133342	NM_001190482	5125	Hs.368542	NM_006200	HPRD:08985	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
19-PTNLD28-TUMOR_peak_87672	chr6	44174719	44174905	+	6.47839	NA	Intergenic	MER34-int|LTR|ERV1	-12430	NM_001078174	2030	Hs.25450	NM_004955	HPRD:03724	SLC29A1	ENT1	solute carrier family 29 (equilibrative nucleoside transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_69628	chr3	107976566	107976756	+	6.47839	NA	Intergenic	L1PA2|LINE|L1	-35244	NM_018010	55081	Hs.412196	NM_018010	HPRD:09430	IFT57	ESRRBL1|HIPPI|MHS4R2	intraflagellar transport 57	protein-coding
19-PTNLD28-TUMOR_peak_12546	chr10	26895412	26895542	+	6.47839	NA	Intergenic	Intergenic	16683	NR_026793	645528	Hs.634511	NR_026793	ENSG00000233261	LINC00264	C10orf50|NCRNA00264|bA128B16.2	long intergenic non-protein coding RNA 264	ncRNA
19-PTNLD28-TUMOR_peak_70008	chr3	118511164	118511259	+	6.47839	NA	Intergenic	Intergenic	-150712	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14847	chr10	91241568	91241656	+	6.47839	NA	intron (NM_213606, intron 2 of 7)	intron (NM_213606, intron 2 of 7)	25864	NR_120614	101926906	Hs.568874	NR_120614	ENSG00000234452	SLC16A12-AS1	-	SLC16A12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_101986	chr9	2874359	2874589	+	6.47839	NA	Intergenic	Intergenic	-30344	NM_014878	9933	Hs.493309	NM_014878	HPRD:08822	KIAA0020	HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A	KIAA0020	protein-coding
19-PTNLD28-TUMOR_peak_33693	chr15	57632985	57633161	+	6.47839	NA	Intergenic	Intergenic	21737	NR_120337	101928611	Hs.569495	NR_120337		LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA
19-PTNLD28-TUMOR_peak_93089	chr7	70875104	70875284	+	6.47839	NA	intron (NM_022479, intron 3 of 10)	LTR26|LTR|ERV1	-102438	NR_037477	100500836		NR_037477	miRBase:MI0016419	MIR3914-1	-	microRNA 3914-1	ncRNA
19-PTNLD28-TUMOR_peak_9569	chr1	204806710	204806855	+	6.47839	NA	intron (NM_001005388, intron 1 of 29)	intron (NM_001005388, intron 1 of 29)	9000	NM_001005388	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_62868	chr21	18700283	18700390	+	6.47839	NA	Intergenic	L1PA2|LINE|L1	-110872	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_9811	chr1	207478317	207478455	+	6.47839	NA	Intergenic	L2b|LINE|L2	-16431	NM_000574	1604	Hs.126517	NM_000574	HPRD:00500	CD55	CR|CROM|DAF|TC	CD55 molecule, decay accelerating factor for complement (Cromer blood group)	protein-coding
19-PTNLD28-TUMOR_peak_98988	chr8	63998379	63998734	+	6.47839	NA	promoter-TSS (NM_000370)	promoter-TSS (NM_000370)	56	NM_000370	7274	Hs.69049	NM_000370	HPRD:02685	TTPA	ATTP|AVED|TTP1|alphaTTP	tocopherol (alpha) transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_58074	chr2	208328313	208328401	+	6.47839	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-66259	NM_134442	1385	Hs.516646	NM_004379	HPRD:00442	CREB1	CREB	cAMP responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54454	chr2	100120584	100120797	+	6.47839	NA	Intergenic	LTR10F|LTR|ERV1	-14210	NM_001037872	51455	Hs.443077	NM_016316	HPRD:16202	REV1	REV1L	REV1, polymerase (DNA directed)	protein-coding
19-PTNLD28-TUMOR_peak_38607	chr16	71446703	71446870	+	6.47839	NA	Intergenic	Intergenic	49331	NM_145911	7571	Hs.656643	NM_145911	HPRD:01915	ZNF23	KOX16|ZNF359|ZNF612|Zfp612	zinc finger protein 23	protein-coding
19-PTNLD28-TUMOR_peak_38833	chr16	77932767	77933019	+	6.47839	NA	intron (NM_020927, intron 7 of 8)	intron (NM_020927, intron 7 of 8)	110410	NM_020927	57687	Hs.461405	NM_020927	HPRD:13875	VAT1L	-	vesicle amine transport 1-like	protein-coding
19-PTNLD28-TUMOR_peak_74941	chr4	37892128	37892235	+	6.47839	NA	promoter-TSS (NM_015173)	promoter-TSS (NM_015173)	-524	NM_001253912	23216	Hs.176503	NM_015173	HPRD:18161	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_41091	chr17	33814902	33814990	+	6.47839	NA	promoter-TSS (NM_001195790)	promoter-TSS (NM_001195790)	-188	NM_001195790	100506736	Hs.447559	NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12-like	protein-coding
19-PTNLD28-TUMOR_peak_56028	chr2	139153659	139153945	+	6.47839	NA	Intergenic	L1MA3|LINE|L1	-105548	NM_001001664	339745	Hs.333297	NM_001001664	HPRD:11261	SPOPL	BTBD33	speckle-type POZ protein-like	protein-coding
19-PTNLD28-TUMOR_peak_8140	chr1	170776754	170776901	+	6.47839	NA	Intergenic	Intergenic	-127785	NM_001163629	80133	Hs.591489	NM_025063	HPRD:08672	MROH9	ARMC11|C1orf129	maestro heat-like repeat family member 9	protein-coding
19-PTNLD28-TUMOR_peak_101447	chr8	142139034	142139276	+	6.47774	NA	intron (NM_014957, intron 1 of 22)	CpG	435	NM_014957	22898	Hs.18166	NM_014957	HPRD:11114	DENND3	-	DENN/MADD domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_85999	chr6	24905836	24905989	+	6.47566	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	5486	NM_014722	9750	Hs.559459	NM_014722	HPRD:12881	FAM65B	C6orf32|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65, member B	protein-coding
19-PTNLD28-TUMOR_peak_62610	chr20	62323954	62324209	+	6.47566	NA	intron (NM_001283009, intron 28 of 34)	intron (NM_001283009, intron 28 of 34)	-3923	NM_003823	8771	Hs.434878	NM_003823	HPRD:04527	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	tumor necrosis factor receptor superfamily, member 6b, decoy	protein-coding
19-PTNLD28-TUMOR_peak_42005	chr17	46022466	46022655	+	6.47478	NA	intron (NM_018129, intron 3 of 6)	L2a|LINE|L2	3671	NM_018129	55163	Hs.631742	NM_018129		PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
19-PTNLD28-TUMOR_peak_10417	chr1	225615174	225615428	+	6.47251	NA	intron (NM_194442, intron 1 of 13)	CpG	514	NM_002296	3930	Hs.435166	NM_002296	HPRD:02488	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_64543	chr22	21738478	21738714	+	6.47251	NA	exon (NM_001128635, exon 1 of 1)	exon (NM_001128635, exon 1 of 1)	556	NM_001128635	440804	Hs.568257	NM_001128635	ENSG00000196934	RIMBP3B	RIM-BP3.2|RIM-BP3.B|RIMBP3.2	RIMS binding protein 3B	protein-coding
19-PTNLD28-TUMOR_peak_20750	chr11	96047893	96048086	+	6.47251	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-26613	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_57538	chr2	192555776	192555909	+	6.47097	NA	Intergenic	Intergenic	12980	NR_045623	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_40560	chr17	19351663	19351778	+	6.47097	NA	Intergenic	AluJr4|SINE|Alu	37229	NM_007148	7732	Hs.189482	NM_007148	HPRD:03140	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
19-PTNLD28-TUMOR_peak_103531	chr9	68455050	68455336	+	6.47097	NA	promoter-TSS (NR_033907)	promoter-TSS (NR_033907)	-818	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53393	chr2	71205814	71206020	+	6.47097	NA	exon (NM_024933, exon 1 of 7)	exon (NM_024933, exon 1 of 7)	342	NM_024933	79998	Hs.512744	NM_024933	HPRD:07762	ANKRD53	-	ankyrin repeat domain 53	protein-coding
19-PTNLD28-TUMOR_peak_15920	chr10	120788833	120789128	+	6.47097	NA	promoter-TSS (NM_199461)	promoter-TSS (NM_199461)	-248	NM_199461	340719	Hs.591918	NM_199461	HPRD:16302	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78179	chr4	183161934	183162160	+	6.46946	NA	Intergenic	Intergenic	71601	NR_031640	100302270		NR_031640	miRBase:MI0006372	MIR1305	MIRN1305|hsa-mir-1305	microRNA 1305	ncRNA
19-PTNLD28-TUMOR_peak_50369	chr19	55896370	55896517	+	6.46856	NA	promoter-TSS (NM_001190764)	promoter-TSS (NM_001190764)	-816	NM_001190764	388564	Hs.534672	NM_001190764		TMEM238	-	transmembrane protein 238	protein-coding
19-PTNLD28-TUMOR_peak_38132	chr16	58498271	58498372	+	6.46653	NA	promoter-TSS (NM_022910)	promoter-TSS (NM_022910)	327	NM_001130487	65009	Hs.322430	NM_020465	HPRD:14817	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
19-PTNLD28-TUMOR_peak_29466	chr14	23307129	23307428	+	6.46653	NA	intron (NM_004995, intron 1 of 9)	intron (NM_004995, intron 1 of 9)	1536	NM_004995	4323	Hs.2399	NM_004995	HPRD:02856	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_90348	chr6	160113693	160113782	+	6.46653	NA	exon (NM_000636, exon 2 of 5)	exon (NM_000636, exon 2 of 5)	616	NM_001024466	6648	Hs.487046	NM_000636	HPRD:00938	SOD2	IPOB|MNSOD|MVCD6	superoxide dismutase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_214	chr1	2183276	2183454	+	6.46653	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	23231	NM_003036	6497	Hs.656507	NM_003036	HPRD:01271	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_8723	chr1	183119218	183119370	+	6.46653	NA	Intergenic	(CACAC)n|Simple_repeat|Simple_repeat	-35880	NM_005562	3918	Hs.591484	NM_005562	HPRD:01031	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_2047	chr1	32039444	32039831	+	6.46444	NA	Intergenic	Intergenic	-2449	NM_001204414	64129	Hs.199368	NM_022164	HPRD:07122	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_9848	chr1	208335142	208335311	+	6.46348	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	82439	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_39162	chr16	85286913	85287011	+	6.46348	NA	Intergenic	Intergenic	-29602	NR_038859	197196	Hs.679002	NM_153238		LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
19-PTNLD28-TUMOR_peak_30897	chr14	68195936	68196275	+	6.46348	NA	intron (NM_152443, intron 8 of 8)	intron (NM_152443, intron 8 of 8)	27502	NM_152443	145226	Hs.415322	NM_152443	HPRD:10585	RDH12	LCA13|LCA3|RP53|SDR7C2	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_74820	chr4	25794596	25794693	+	6.46348	NA	intron (NM_001297594, intron 11 of 23)	MIR|SINE|MIR	70009	NM_015187	23231	Hs.479384	NM_015187	HPRD:11105	SEL1L3	Sel-1L3	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_71311	chr3	140732308	140732461	+	6.46348	NA	Intergenic	Intergenic	-38359	NM_080862	92369	Hs.655112	NM_080862	HPRD:18108	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_56591	chr2	160919061	160919459	+	6.46348	NA	promoter-TSS (NM_007366)	promoter-TSS (NM_007366)	-134	NM_001007267	22925	Hs.410477	NM_007366	HPRD:09222	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1, 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_95038	chr7	126730390	126730527	+	6.46348	NA	intron (NR_028041, intron 2 of 10)	intron (NR_028041, intron 2 of 10)	-32220	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_70904	chr3	133132506	133132664	+	6.46348	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	13746	NM_003571	8419	Hs.659862	NM_003571	HPRD:04444	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2, phakinin	protein-coding
19-PTNLD28-TUMOR_peak_93837	chr7	88388696	88388918	+	6.46348	NA	promoter-TSS (NM_181646)	promoter-TSS (NM_181646)	54	NM_181646	219578	Hs.684410	NM_181646	HPRD:08721	ZNF804B	-	zinc finger protein 804B	protein-coding
19-PTNLD28-TUMOR_peak_77392	chr4	144621898	144622211	+	6.46348	NA	promoter-TSS (NM_001168235)	promoter-TSS (NM_001168235)	-226	NM_001168235	166752	Hs.252714	NM_001168235	ENSG00000183090	FREM3	-	FRAS1 related extracellular matrix 3	protein-coding
19-PTNLD28-TUMOR_peak_34598	chr15	76020790	76020878	+	6.46348	NA	TTS (NM_175881)	TTS (NM_175881)	4515	NM_175881	161753	Hs.144348	NM_175881	HPRD:11360	ODF3L1	-	outer dense fiber of sperm tails 3-like 1	protein-coding
19-PTNLD28-TUMOR_peak_35973	chr16	4310521	4310664	+	6.46348	NA	exon (NM_003223, exon 5 of 7)	exon (NM_003223, exon 5 of 7)	-6802	NR_039999	100507501	Hs.632979	NR_039999	ENSG00000262468	LOC100507501	-	uncharacterized LOC100507501	ncRNA
19-PTNLD28-TUMOR_peak_33978	chr15	64752600	64752708	+	6.46348	NA	Intergenic	CpG	-38965	NM_015042	23060	Hs.595451	NM_015042	HPRD:18754	ZNF609	-	zinc finger protein 609	protein-coding
19-PTNLD28-TUMOR_peak_14878	chr10	92922455	92922661	+	6.46247	NA	promoter-TSS (NM_001257101)	promoter-TSS (NM_001257101)	-211	NR_046435	84333	Hs.500512	NM_032373	HPRD:17825	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
19-PTNLD28-TUMOR_peak_24536	chr12	54535790	54535878	+	6.46247	NA	Intergenic	Intergenic	15979	NR_026656	400043	Hs.19193	NR_026656	ENSG00000250742	LOC400043	-	uncharacterized LOC400043	ncRNA
19-PTNLD28-TUMOR_peak_75023	chr4	40285195	40285388	+	6.46247	NA	Intergenic	Intergenic	-23911	NR_121641	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_19809	chr11	71489333	71489475	+	6.46247	NA	Intergenic	Intergenic	-9153	NM_018172	55199	Hs.567527	NM_018172	HPRD:13337	FAM86C1	FAM86C	family with sequence similarity 86, member C1	protein-coding
19-PTNLD28-TUMOR_peak_14994	chr10	96305571	96305789	+	6.46247	NA	exon (NM_018063, exon 1 of 22)	exon (NM_018063, exon 1 of 22)	156	NM_001289068	3070	Hs.655830	NM_018063	HPRD:07232	HELLS	LSH|PASG|SMARCA6	helicase, lymphoid-specific	protein-coding
19-PTNLD28-TUMOR_peak_2609	chr1	39427231	39427427	+	6.46247	NA	Intergenic	MER21C|LTR|ERVL	-19873	NM_017821	54933	Hs.524626	NM_017821	HPRD:07151	RHBDL2	RRP2	rhomboid, veinlet-like 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_101618	chr8	144416176	144416265	+	6.46081	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	841	NM_052963	116447	Hs.528574	NM_052963	HPRD:16214	TOP1MT	-	topoisomerase (DNA) I, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_100211	chr8	117633637	117633739	+	6.46081	NA	Intergenic	MLT2A2|LTR|ERVL	134374	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_48019	chr19	18268059	18268152	+	6.45624	NA	intron (NR_073517, intron 2 of 15)	intron (NR_073517, intron 2 of 15)	4117	NM_005027	5296	Hs.371344	NM_005027	HPRD:04404	PIK3R2	MPPH|P85B|p85|p85-BETA	phosphoinositide-3-kinase, regulatory subunit 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_105865	chr9	124050560	124050696	+	6.45283	NA	intron (NM_001258030, intron 1 of 16)	MIRb|SINE|MIR	1770	NM_001258030	2934	Hs.522373	NM_000177	HPRD:00674	GSN	ADF|AGEL	gelsolin	protein-coding
19-PTNLD28-TUMOR_peak_90587	chr6	168715767	168715924	+	6.45047	NA	intron (NM_001286351, intron 1 of 5)	intron (NM_001286351, intron 1 of 5)	4589	NM_001286351	168002	Hs.673059	NM_214462	HPRD:12345	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled-binding antagonist of beta-catenin 2	protein-coding
19-PTNLD28-TUMOR_peak_79072	chr5	15500699	15500842	+	6.45047	NA	promoter-TSS (NM_001278317)	promoter-TSS (NM_001278317)	465	NM_012304	23194	Hs.433057	NM_012304	HPRD:05740	FBXL7	FBL6|FBL7	F-box and leucine-rich repeat protein 7	protein-coding
19-PTNLD28-TUMOR_peak_20431	chr11	86195280	86195429	+	6.45047	NA	intron (NM_001014811, intron 6 of 13)	intron (NM_001014811, intron 6 of 13)	109576	NM_021827	60494	Hs.144913	NM_021827	HPRD:08032	CCDC81	-	coiled-coil domain containing 81	protein-coding
19-PTNLD28-TUMOR_peak_41529	chr17	40574717	40574922	+	6.45047	NA	exon (NM_012232, exon 1 of 2)	exon (NM_012232, exon 1 of 2)	519	NM_012232	284119	Hs.437191	NM_012232	HPRD:04433	PTRF	CAVIN|CAVIN1|CGL4|cavin-1	polymerase I and transcript release factor	protein-coding
19-PTNLD28-TUMOR_peak_27275	chr12	132863554	132863817	+	6.45047	NA	intron (NM_001122636, intron 1 of 10)	intron (NM_001122636, intron 1 of 10)	11708	NR_024563	100130238	Hs.536338	NR_024563		LOC100130238	-	uncharacterized LOC100130238	ncRNA
19-PTNLD28-TUMOR_peak_41040	chr17	32579569	32579936	+	6.45047	NA	Intergenic	Intergenic	-2544	NM_002982	6347	Hs.303649	NM_002982	HPRD:01149	CCL2	GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF	chemokine (C-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_99983	chr8	106523292	106523472	+	6.45047	NA	intron (NM_012082, intron 3 of 7)	intron (NM_012082, intron 3 of 7)	192235	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_95463	chr7	133536229	133536470	+	6.44917	NA	intron (NM_021807, intron 11 of 17)	L2a|LINE|L2	-26708	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
19-PTNLD28-TUMOR_peak_32309	chr14	105435186	105435496	+	6.44815	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	9353	NM_138420	113146	Hs.441783	NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
19-PTNLD28-TUMOR_peak_62327	chr20	56534809	56534902	+	6.44680	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	64405	NR_039757	100616353		NR_039757	miRBase:MI0016899	MIR4532	-	microRNA 4532	ncRNA
19-PTNLD28-TUMOR_peak_75405	chr4	56814160	56814308	+	6.44680	NA	promoter-TSS (NM_025009)	promoter-TSS (NM_025009)	-740	NM_025009	9662	Hs.518767	NM_014645	HPRD:09954	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_64666	chr22	23519497	23519645	+	6.44680	NA	Intergenic	Intergenic	-2981	NM_021574	613	Hs.517461	NM_004327	HPRD:01044	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	breakpoint cluster region	protein-coding
19-PTNLD28-TUMOR_peak_73711	chr3	197923877	197923983	+	6.44172	NA	Intergenic	AluJr4|SINE|Alu	44693	NM_001145248	728262	Hs.744675	NM_001145248		FAM157A	-	family with sequence similarity 157, member A	protein-coding
19-PTNLD28-TUMOR_peak_61322	chr20	43986985	43987236	+	6.44076	NA	Intergenic	Intergenic	-3467	NM_001197129	90196	Hs.655055	NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	Sys1 golgi trafficking protein	protein-coding
19-PTNLD28-TUMOR_peak_104863	chr9	100279916	100280085	+	6.44076	NA	intron (NM_003275, intron 1 of 9)	intron (NM_003275, intron 1 of 9)	16079	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_80905	chr5	79198623	79198711	+	6.43978	NA	Intergenic	L1PA3|LINE|L1	88421	NM_001167741	345778	Hs.531418	NM_001010891		MTX3	-	metaxin 3	protein-coding
19-PTNLD28-TUMOR_peak_41157	chr17	35064401	35064682	+	6.43978	NA	Intergenic	MIR|SINE|MIR	106516	NM_024864	79922	Hs.194864	NM_024864	HPRD:08656	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_107793	chrX	22538317	22538476	+	6.43978	NA	intron (NR_073010, intron 4 of 5)	intron (NR_073010, intron 4 of 5)	247366	NM_152577	158506	Hs.132485	NM_152577	HPRD:06545	ZNF645	CT138|HAKAIL	zinc finger protein 645	protein-coding
19-PTNLD28-TUMOR_peak_74632	chr4	16085225	16085334	+	6.43978	NA	intron (NM_001145848, intron 1 of 26)	CpG	315	NM_001145847	8842	Hs.614734	NM_006017	HPRD:05079	PROM1	AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4	prominin 1	protein-coding
19-PTNLD28-TUMOR_peak_69570	chr3	107086236	107086324	+	6.43978	NA	Intergenic	Intergenic	-9908	NM_032600	84692	Hs.164799	NM_032600	HPRD:14860	CCDC54	NYD-SP17|SP17	coiled-coil domain containing 54	protein-coding
19-PTNLD28-TUMOR_peak_66260	chr3	4818851	4818991	+	6.43978	NA	intron (NM_001168272, intron 46 of 60)	intron (NM_001168272, intron 46 of 60)	-25647	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_69045	chr3	72897337	72897444	+	6.43978	NA	exon (NM_018130, exon 1 of 11)	exon (NM_018130, exon 1 of 11)	208	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_11147	chr1	236515287	236515497	+	6.43978	NA	Intergenic	MER41E|LTR|ERV1	-42288	NM_145861	128178	Hs.352224	NM_080738	HPRD:05965	EDARADD	ECTD11A|ECTD11B|ED3|EDA3	EDAR-associated death domain	protein-coding
19-PTNLD28-TUMOR_peak_35181	chr15	90614615	90614703	+	6.43978	NA	intron (NM_198526, intron 2 of 4)	intron (NM_198526, intron 2 of 4)	29194	NM_001289910	3418	Hs.596461	NM_002168	HPRD:00973	IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_34579	chr15	75824925	75825248	+	6.43978	NA	intron (NM_002833, intron 1 of 12)	intron (NM_002833, intron 1 of 12)	46546	NM_002833	5780	Hs.445775	NM_002833	HPRD:02864	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding
19-PTNLD28-TUMOR_peak_12809	chr10	32236604	32236759	+	6.43978	NA	Intergenic	Intergenic	-18877	NM_001270698	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_94120	chr7	97680637	97680753	+	6.43978	NA	Intergenic	Intergenic	-55502	NM_014916	22853	Hs.444179	NM_014916	HPRD:13994	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk	lemur tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_108299	chrX	49165877	49166061	+	6.43978	NA	intron (NM_001098413, intron 3 of 4)	HERV15-int|LTR|ERV1	5844	NM_001098413	102724473		NM_001098413	ENSG00000215274	GAGE10	GAGE-10	G antigen 10	protein-coding
19-PTNLD28-TUMOR_peak_37961	chr16	56406963	56407119	+	6.43978	NA	intron (NM_001144, intron 10 of 13)	L1MC1|LINE|L1	52409	NM_001144	267	Hs.295137	NM_001144	HPRD:09130	AMFR	GP78|RNF45	autocrine motility factor receptor, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_80023	chr5	56594796	56594916	+	6.43978	NA	Intergenic	Intergenic	84955	NM_001127236	65056	Hs.444279	NM_022913	HPRD:16333	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82791	chr5	141438023	141438178	+	6.43978	NA	Intergenic	AluSx1|SINE|Alu	-45480	NM_005471	10007	Hs.633853	NM_005471	HPRD:09048	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
19-PTNLD28-TUMOR_peak_101191	chr8	135122556	135122687	+	6.43978	NA	Intergenic	Intergenic	223882	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_65774	chr22	43136381	43136525	+	6.43978	NA	Intergenic	LTR29|LTR|ERV1	-19577	NM_017436	53947	Hs.105956	NM_017436	HPRD:06390	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_20327	chr11	79849904	79850073	+	6.43978	NA	Intergenic	Intergenic	623858	NR_120570	101928944	Hs.547927	NR_120570	ENSG00000255178	LOC101928944	-	uncharacterized LOC101928944	ncRNA
19-PTNLD28-TUMOR_peak_39649	chr17	1732201	1732646	+	6.43256	NA	promoter-TSS (NM_002945)	promoter-TSS (NM_002945)	752	NM_052928	114826	Hs.514602	NM_052928	HPRD:18079	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_95843	chr7	140304552	140304723	+	6.43256	NA	Intergenic	L2c|LINE|L2	-2295	NM_015689	27147	Hs.6385	NM_015689	HPRD:17210	DENND2A	FAM31D|KIAA1277	DENN/MADD domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_74061	chr4	4286664	4286800	+	6.43256	NA	intron (NM_017816, intron 2 of 9)	intron (NM_017816, intron 2 of 9)	5016	NM_001145725	55646	Hs.425427	NM_017816	HPRD:10064	LYAR	ZC2HC2|ZLYAR	Ly1 antibody reactive	protein-coding
19-PTNLD28-TUMOR_peak_1550	chr1	24648759	24648972	+	6.43256	NA	promoter-TSS (NM_021180)	promoter-TSS (NM_021180)	-665	NM_021180	57822	Hs.657920	NM_021180	HPRD:12210	GRHL3	SOM|TFCP2L4|VWS2	grainyhead-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_21107	chr11	111288308	111288566	+	6.43256	NA	non-coding (NR_046085, exon 1 of 4)	non-coding (NR_046085, exon 1 of 4)	474	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
19-PTNLD28-TUMOR_peak_61252	chr20	43272262	43272395	+	6.43256	NA	intron (NM_000022, intron 1 of 11)	intron (NM_000022, intron 1 of 11)	8048	NM_000022	100	Hs.654536	NM_000022	HPRD:00038	ADA	-	adenosine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_51406	chr2	19562649	19562980	+	6.43256	NA	Intergenic	CpG	-4442	NM_145260	130497	Hs.123933	NM_145260	HPRD:16401	OSR1	ODD	odd-skipped related transciption factor 1	protein-coding
19-PTNLD28-TUMOR_peak_109931	chrX	153265211	153265359	+	6.43256	NA	Intergenic	Intergenic	-18658	NR_036175	100422877		NR_036175		MIR3202-2	-	microRNA 3202-2	ncRNA
19-PTNLD28-TUMOR_peak_20249	chr11	78007114	78007226	+	6.43256	NA	intron (NM_080491, intron 1 of 9)	MER1B|DNA|hAT-Charlie	45756	NM_012296	9846	Hs.429434	NM_012296	HPRD:05866	GAB2	-	GRB2-associated binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_16033	chr10	123900542	123900892	+	6.43252	NA	intron (NM_001291879, intron 2 of 16)	intron (NM_001291879, intron 2 of 16)	-22224	NM_206860	10579	Hs.501252	NM_006997	HPRD:05600	TACC2	AZU-1|ECTACC	transforming, acidic coiled-coil containing protein 2	protein-coding
19-PTNLD28-TUMOR_peak_104529	chr9	93507638	93507750	+	6.43252	NA	Intergenic	Intergenic	-56268	NM_003177	6850	Hs.371720	NM_003177	HPRD:02514	SYK	p72-Syk	spleen tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_78242	chr4	184391216	184391405	+	6.43252	NA	Intergenic	Charlie6|DNA|hAT-Charlie	25521	NM_017632	55602	Hs.644077	NM_017632	HPRD:16683	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_110132	chrY	4822387	4822575	+	6.43252	NA	Intergenic	L1HS|LINE|L1	-45786	NM_032971	83259	Hs.661308	NM_032971	HPRD:11847	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
19-PTNLD28-TUMOR_peak_103698	chr9	72000644	72000928	+	6.43252	NA	exon (NM_001127608, exon 9 of 11)	exon (NM_001127608, exon 9 of 11)	56545	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_105386	chr9	113132710	113132920	+	6.43252	NA	intron (NM_153366, intron 46 of 47)	intron (NM_153366, intron 46 of 47)	-32651	NM_001286947	255220	Hs.147064	NM_001003936	HPRD:18251	TXNDC8	SPTRX-3|TRX6|bA427L11.2	thioredoxin domain containing 8 (spermatozoa)	protein-coding
19-PTNLD28-TUMOR_peak_59225	chr2	241137163	241137575	+	6.43252	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	-57296	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_21974	chr11	126588410	126588498	+	6.43252	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	62473	NR_120533	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
19-PTNLD28-TUMOR_peak_5464	chr1	110698670	110698793	+	6.43252	NA	intron (NM_001010898, intron 1 of 11)	intron (NM_001010898, intron 1 of 11)	5599	NM_001010898	388662	Hs.128382	NM_001010898	HPRD:18061	SLC6A17	NTT4	solute carrier family 6 (neutral amino acid transporter), member 17	protein-coding
19-PTNLD28-TUMOR_peak_1493	chr1	24151709	24152063	+	6.43252	NA	promoter-TSS (NM_000191)	promoter-TSS (NM_000191)	63	NM_000191	3155	Hs.533444	NM_000191	HPRD:02003	HMGCL	HL	3-hydroxymethyl-3-methylglutaryl-CoA lyase	protein-coding
19-PTNLD28-TUMOR_peak_22265	chr11	132190486	132190660	+	6.43252	NA	intron (NM_016522, intron 6 of 6)	L1PA4|LINE|L1	36377	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_29761	chr14	32603990	32604296	+	6.43252	NA	intron (NM_001030055, intron 3 of 6)	intron (NM_001030055, intron 3 of 6)	57648	NM_001030055	394	Hs.592313	NM_001173	HPRD:04060	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
19-PTNLD28-TUMOR_peak_27665	chr13	30683224	30683314	+	6.43252	NA	Intergenic	Intergenic	172601	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_60954	chr20	37032258	37032346	+	6.43252	NA	Intergenic	AluY|SINE|Alu	21676	NR_002910	26776	Hs.400876	NR_002910	ENSG00000235408	SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
19-PTNLD28-TUMOR_peak_44760	chr18	15315457	15315545	+	6.43252	NA	non-coding (NR_027417, exon 5 of 6)	non-coding (NR_027417, exon 5 of 6)	10417	NR_027417	644669	Hs.579474	NR_027417	ENSG00000215512	LOC644669	-	ankyrin repeat domain 30B pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62202	chr20	55314608	55314702	+	6.43252	NA	Intergenic	Intergenic	110297	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_20825	chr11	101453532	101453691	+	6.43252	NA	intron (NM_004621, intron 1 of 12)	CpG	1048	NM_004621	7225	Hs.159003	NM_004621	HPRD:04710	TRPC6	FSGS2|TRP6	transient receptor potential cation channel, subfamily C, member 6	protein-coding
19-PTNLD28-TUMOR_peak_107959	chrX	39168589	39168738	+	6.43252	NA	intron (NR_038968, intron 2 of 3)	intron (NR_038968, intron 2 of 3)	17953	NR_038968	286442	Hs.638478	NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
19-PTNLD28-TUMOR_peak_53002	chr2	62546343	62546442	+	6.43252	NA	Intergenic	AluJb|SINE|Alu	113431	NR_049824	100847087		NR_049824	miRBase:MI0018171	MIR5192	-	microRNA 5192	ncRNA
19-PTNLD28-TUMOR_peak_43673	chr17	75612616	75612711	+	6.43252	NA	Intergenic	MER41A|LTR|ERV1	69640	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
19-PTNLD28-TUMOR_peak_82138	chr5	132149257	132149457	+	6.43252	NA	exon (NM_175873, exon 1 of 1)	exon (NM_175873, exon 1 of 1)	341	NM_175873	134548	Hs.13308	NM_175873	HPRD:14059	SOWAHA	ANKRD43	sosondowah ankyrin repeat domain family member A	protein-coding
19-PTNLD28-TUMOR_peak_4363	chr1	74818232	74818343	+	6.43252	NA	intron (NM_001199327, intron 11 of 23)	L1PA4|LINE|L1	117216	NM_015978	51086	Hs.480085	NM_015978	HPRD:18208	TNNI3K	CARK	TNNI3 interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_15554	chr10	110358823	110359014	+	6.43252	NA	Intergenic	LTR7B|LTR|ERV1	-529867	NR_125760	103695365	Hs.648991	NR_125760		LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
19-PTNLD28-TUMOR_peak_92544	chr7	50850132	50850282	+	6.43252	NA	intron (NM_001001555, intron 1 of 16)	CpG	10952	NM_001001555	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_55946	chr2	136864952	136865049	+	6.43252	NA	Intergenic	Intergenic	8813	NM_001008540	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_80102	chr5	58718004	58718276	+	6.43252	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-65413	NM_001197219	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_53115	chr2	65144936	65145047	+	6.43252	NA	intron (NR_036586, intron 1 of 2)	intron (NR_036586, intron 1 of 2)	14590	NR_036586	400958	Hs.591565	NR_036586		LOC400958	-	uncharacterized LOC400958	ncRNA
19-PTNLD28-TUMOR_peak_89245	chr6	117591619	117591713	+	6.43252	NA	intron (NM_153453, intron 2 of 2)	CpG	4945	NM_153453	245806	Hs.99324	NM_153453	HPRD:18282	VGLL2	VGL2|VITO1	vestigial-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_89267	chr6	119028037	119028162	+	6.43252	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	3139	NM_001178035	387119	Hs.656959	NM_206921	HPRD:12874	CEP85L	C6orf204|NY-BR-15|bA57K17.2	centrosomal protein 85kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_104435	chr9	91429517	91429630	+	6.43252	NA	Intergenic	Intergenic	-68753	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_98233	chr8	37984642	37984730	+	6.43252	NA	intron (NM_001261832, intron 10 of 14)	AluJb|SINE|Alu	21375	NM_001261832	9070	Hs.521530	NM_004674	HPRD:05309	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_48248	chr19	22398605	22398718	+	6.43252	NA	Intergenic	Intergenic	-18908	NM_001001411	163223	Hs.55452	NM_001001411	HPRD:17313	ZNF676	-	zinc finger protein 676	protein-coding
19-PTNLD28-TUMOR_peak_64925	chr22	28140231	28140410	+	6.43252	NA	Intergenic	HERVH-int|LTR|ERV1	57166	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_27272	chr12	132851863	132851952	+	6.43252	NA	promoter-TSS (NR_024563)	promoter-TSS (NR_024563)	-70	NR_024563	100130238	Hs.536338	NR_024563		LOC100130238	-	uncharacterized LOC100130238	ncRNA
19-PTNLD28-TUMOR_peak_105846	chr9	123918597	123918685	+	6.43252	NA	intron (NM_007018, intron 25 of 41)	intron (NM_007018, intron 25 of 41)	45724	NM_016322	51552	Hs.371563	NM_016322	HPRD:06693	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_47281	chr19	11064893	11064981	+	6.43005	NA	Intergenic	AluJr|SINE|Alu	-6661	NM_003072	6597	Hs.327527	NM_003072	HPRD:04459	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
19-PTNLD28-TUMOR_peak_3346	chr1	48322396	48322536	+	6.43005	NA	intron (NM_001194986, intron 2 of 6)	intron (NM_001194986, intron 2 of 6)	140096	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_104795	chr9	98931858	98932090	+	6.43005	NA	Intergenic	Intergenic	-53281	NM_001256408	158434	Hs.381771	NM_001256408		LOC158434	-	uncharacterized LOC158434	protein-coding
19-PTNLD28-TUMOR_peak_82520	chr5	138751088	138751456	+	6.43005	NA	intron (NM_152686, intron 7 of 7)	intron (NM_152686, intron 7 of 7)	-11496	NM_194296	202051	Hs.373612	NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
19-PTNLD28-TUMOR_peak_32268	chr14	104583219	104583439	+	6.43005	NA	promoter-TSS (NR_029620)	promoter-TSS (NR_029620)	-413	NR_029620	406986		NR_029620	miRBase:MI0000283	MIR203A	MIR203|MIRN203|hsa-mir-203a|miR-203|miRNA203	microRNA 203a	ncRNA
19-PTNLD28-TUMOR_peak_109106	chrX	106984847	106985115	+	6.43005	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-24690	NM_004089	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_35011	chr15	85762759	85762847	+	6.43005	NA	Intergenic	AluY|SINE|Alu	-14285	NR_049748	642423	Hs.681665	NR_049748		LOC642423	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_63726	chr21	43477559	43477837	+	6.43005	NA	Intergenic	Intergenic	-5370	NM_001199528	89766	Hs.242520	NM_173568	HPRD:08775	UMODL1	-	uromodulin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91821	chr7	30027636	30027785	+	6.43005	NA	intron (NM_001145514, intron 1 of 7)	intron (NM_001145514, intron 1 of 7)	1715	NM_001145515	9805	Hs.520740	NM_014766	HPRD:15304	SCRN1	SES1	secernin 1	protein-coding
19-PTNLD28-TUMOR_peak_59314	chr2	242559947	242560085	+	6.43005	NA	intron (NM_015963, intron 2 of 5)	(TGAG)n|Simple_repeat|Simple_repeat	-3100	NM_001164356	51078	Hs.435759	NM_015963	HPRD:11630	THAP4	PP238	THAP domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_1314	chr1	21501216	21501309	+	6.43005	NA	promoter-TSS (NM_001198803)	promoter-TSS (NM_001198803)	-11	NM_001198803	8672	Hs.467084	NM_003760	HPRD:06802	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma, 3	protein-coding
19-PTNLD28-TUMOR_peak_80482	chr5	69650148	69650236	+	6.42949	NA	intron (NR_027386, intron 3 of 5)	intron (NR_027386, intron 3 of 5)	-61005	NR_033417	653238	Hs.607501	NM_001098729		GTF2H2B	-	general transcription factor IIH, polypeptide 2B (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_74234	chr4	7105060	7105151	+	6.42949	NA	promoter-TSS (NR_027441)	promoter-TSS (NR_027441)	-2	NR_027441	730971	Hs.591718	NR_027441		FLJ36777	-	uncharacterized LOC730971	ncRNA
19-PTNLD28-TUMOR_peak_15586	chr10	111967266	111967404	+	6.42949	NA	promoter-TSS (NM_130439)	promoter-TSS (NM_130439)	-28	NM_130439	4601	Hs.602078	NM_005962	HPRD:02486	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
19-PTNLD28-TUMOR_peak_74345	chr4	8429749	8429918	+	6.42912	NA	intron (NM_003501, intron 1 of 17)	intron (NM_003501, intron 1 of 17)	12619	NM_001101667	8310	Hs.479122	NM_003501	HPRD:04552	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
19-PTNLD28-TUMOR_peak_43380	chr17	73105890	73106121	+	6.42912	NA	promoter-TSS (NM_024585)	promoter-TSS (NM_024585)	-77	NM_024585	79637	Hs.413047	NM_024585	HPRD:08649	ARMC7	-	armadillo repeat containing 7	protein-coding
19-PTNLD28-TUMOR_peak_40014	chr17	7737918	7738140	+	6.42851	NA	TTS (NM_020877)	TTS (NM_020877)	-5206	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine (K)-specific demethylase 6B	protein-coding
19-PTNLD28-TUMOR_peak_97938	chr8	28748616	28748774	+	6.42763	NA	promoter-TSS (NM_018250)	promoter-TSS (NM_018250)	470	NM_024567	79618	Hs.563560	NM_024567	HPRD:07964	HMBOX1	HNF1LA|HOT1|PBHNF	homeobox containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63460	chr21	38738048	38738314	+	6.42400	NA	Intergenic	Intergenic	-1678	NM_101395	1859	Hs.368240	NM_001396	HPRD:09018	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	protein-coding
19-PTNLD28-TUMOR_peak_66481	chr3	9851004	9851171	+	6.42400	NA	promoter-TSS (NR_037162)	promoter-TSS (NR_037162)	-557	NM_001025930	26140	Hs.726435	NM_015644	HPRD:15585	TTLL3	HOTTL	tubulin tyrosine ligase-like family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_75798	chr4	77724040	77724212	+	6.42400	NA	Intergenic	Intergenic	94876	NM_001029870	345079	Hs.257292	NM_001029870	HPRD:18789	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
19-PTNLD28-TUMOR_peak_50047	chr19	51573720	51573814	+	6.42365	NA	Intergenic	MER77|LTR|ERVL	-5400	NM_015596	26085	Hs.165296	NM_015596		KLK13	KLK-L4|KLKL4	kallikrein-related peptidase 13	protein-coding
19-PTNLD28-TUMOR_peak_63880	chr21	45139782	45139905	+	6.42365	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	865	NM_003681	8566	Hs.284491	NM_003681	HPRD:01526	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
19-PTNLD28-TUMOR_peak_16530	chr11	859673	859998	+	6.42338	NA	intron (NM_001025234, intron 3 of 8)	intron (NM_001025234, intron 3 of 8)	15389	NM_001025237	7106	Hs.654836	NM_003271	HPRD:04033	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
19-PTNLD28-TUMOR_peak_26115	chr12	108520896	108521220	+	6.42338	NA	Intergenic	L5|LINE|RTE	-2453	NM_014653	9671	Hs.143591	NM_014653	HPRD:17196	WSCD2	-	WSC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_49624	chr19	48148997	48149101	+	6.42338	NA	intron (NM_015711, intron 1 of 14)	intron (NM_015711, intron 1 of 14)	37596	NM_015711	29998	Hs.97244	NM_015711	HPRD:09296	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_104184	chr9	86238329	86238661	+	6.42338	NA	intron (NR_046421, intron 1 of 3)	CpG	531	NR_046421	414328	Hs.530261	NM_001001551		IDNK	C9orf103|bA522I20.2	idnK, gluconokinase homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_40412	chr17	17685511	17685704	+	6.42338	NA	intron (NM_030665, intron 2 of 5)	CpG	-2764	NR_024007	140771	Hs.352643	NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_103532	chr9	68455482	68455572	+	6.42338	NA	Intergenic	CpG	-1152	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22969	chr12	9067119	9067256	+	6.41365	NA	promoter-TSS (NM_004426)	promoter-TSS (NM_004426)	-129	NM_004426	1911	Hs.744902	NM_004426	HPRD:16009	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_58577	chr2	223292829	223292929	+	6.41365	NA	intron (NM_152386, intron 1 of 4)	intron (NM_152386, intron 1 of 4)	3557	NM_152386	130367	Hs.591604	NM_152386		SGPP2	SPP2	sphingosine-1-phosphate phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_101379	chr8	141128993	141129091	+	6.41365	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	338819	NM_001160372	83696	Hs.654911	NM_031466	HPRD:18136	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|TRS120	trafficking protein particle complex 9	protein-coding
19-PTNLD28-TUMOR_peak_93316	chr7	74020529	74020643	+	6.41365	NA	Intergenic	Intergenic	-51405	NM_032999	2969	Hs.647041	NM_001518	HPRD:03399	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
19-PTNLD28-TUMOR_peak_15147	chr10	99648960	99649048	+	6.41365	NA	intron (NM_018058, intron 11 of 14)	intron (NM_018058, intron 11 of 14)	39009	NM_001010917	401647	Hs.567524	NM_001010917	HPRD:16579	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family, member B	protein-coding
19-PTNLD28-TUMOR_peak_84809	chr6	2763936	2764074	+	6.41239	NA	Intergenic	LTR12C|LTR|ERV1	-1661	NM_020135	56897	Hs.236828	NM_020135	HPRD:10494	WRNIP1	WHIP|bA420G6.2	Werner helicase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16778	chr11	3862037	3862185	+	6.41083	NA	intron (NM_001665, intron 1 of 1)	CpG	102	NM_001665	391	Hs.501728	NM_001665	HPRD:01537	RHOG	ARHG	ras homolog family member G	protein-coding
19-PTNLD28-TUMOR_peak_33147	chr15	40397063	40397209	+	6.41083	NA	intron (NM_001003942, intron 1 of 2)	intron (NM_001003942, intron 1 of 2)	1151	NM_001003942	90427	Hs.591104	NM_033503	HPRD:05881	BMF	-	Bcl2 modifying factor	protein-coding
19-PTNLD28-TUMOR_peak_78704	chr5	1799502	1799646	+	6.41083	NA	intron (NM_032479, intron 1 of 1)	CpG	382	NM_032479	64979	Hs.719465	NM_032479	HPRD:14756	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ	mitochondrial ribosomal protein L36	protein-coding
19-PTNLD28-TUMOR_peak_10399	chr1	224820817	224820937	+	6.40916	NA	intron (NM_152495, intron 1 of 5)	AluSz6|SINE|Alu	16698	NM_152495	149111	Hs.731723	NM_152495	HPRD:08799	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
19-PTNLD28-TUMOR_peak_2477	chr1	37331009	37331153	+	6.40916	NA	intron (NM_000831, intron 5 of 15)	intron (NM_000831, intron 5 of 15)	168763	NM_000831	2899	Hs.128848	NM_000831	HPRD:00691	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate receptor, ionotropic, kainate 3	protein-coding
19-PTNLD28-TUMOR_peak_77033	chr4	129207774	129207879	+	6.40916	NA	intron (NM_006320, intron 1 of 2)	intron (NM_006320, intron 1 of 2)	2158	NM_006320	10424	Hs.507910	NM_006320	HPRD:09665	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
19-PTNLD28-TUMOR_peak_72971	chr3	186649774	186649924	+	6.40749	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	1534	NM_173217	6480	Hs.207459	NM_003032	HPRD:00184	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	protein-coding
19-PTNLD28-TUMOR_peak_84271	chr5	176432859	176433006	+	6.40701	NA	intron (NM_001199297, intron 1 of 15)	CpG	511	NM_016290	51720	Hs.232721	NM_016290	HPRD:11482	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_79363	chr5	32714058	32714353	+	6.40701	NA	intron (NM_000908, intron 1 of 7)	CpG	2767	NM_001204375	4883	Hs.13528	NM_000908	HPRD:00167	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_49707	chr19	48984081	48984401	+	6.40701	NA	3' UTR (NM_004228, exon 12 of 12)	3' UTR (NM_004228, exon 12 of 12)	11776	NM_017457	9266	Hs.144011	NM_004228	HPRD:03925	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like	cytohesin 2	protein-coding
19-PTNLD28-TUMOR_peak_16327	chr10	134222543	134222671	+	6.40701	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	11905	NM_001098637	170394	Hs.527751	NM_138499	HPRD:11465	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_75426	chr4	57301397	57301491	+	6.40478	NA	promoter-TSS (NM_006452)	promoter-TSS (NM_006452)	358	NM_002703	5471	Hs.331420	NM_002703	HPRD:01402	PPAT	ATASE|GPAT|PRAT	phosphoribosyl pyrophosphate amidotransferase	protein-coding
19-PTNLD28-TUMOR_peak_2024	chr1	31770606	31770734	+	6.40478	NA	intron (NM_001282566, intron 1 of 6)	L2b|LINE|L2	841	NM_001282567	51538	Hs.524094	NM_016505	HPRD:15189	ZCCHC17	HSPC251|PS1D|pNO40	zinc finger, CCHC domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_73844	chr4	1582616	1583023	+	6.40478	NA	Intergenic	C-rich|Low_complexity|Low_complexity	102899	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_85313	chr6	11093409	11093538	+	6.40321	NA	promoter-TSS (NM_001135575)	promoter-TSS (NM_001135575)	-793	NM_001135575	221710	Hs.656600	NM_001135575	ENSG00000224531	SMIM13	C6orf228	small integral membrane protein 13	protein-coding
19-PTNLD28-TUMOR_peak_50303	chr19	54982258	54982350	+	6.40321	NA	intron (NM_145057, intron 2 of 2)	MIRb|SINE|MIR	2133	NM_145057	148170	Hs.415791	NM_145057	HPRD:13023	CDC42EP5	Borg3|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding
19-PTNLD28-TUMOR_peak_74792	chr4	25235395	25235856	+	6.40321	NA	promoter-TSS (NM_018323)	promoter-TSS (NM_018323)	-28	NM_018323	55300	Hs.191701	NM_018323	HPRD:15132	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_77009	chr4	128704418	128704539	+	6.40321	NA	intron (NM_014278, intron 1 of 18)	intron (NM_014278, intron 1 of 18)	1025	NM_014278	22824	Hs.135554	NM_014278		HSPA4L	APG-1|HSPH3|Osp94	heat shock 70kDa protein 4-like	protein-coding
19-PTNLD28-TUMOR_peak_24762	chr12	57623775	57623984	+	6.40321	NA	promoter-TSS (NR_048562)	promoter-TSS (NR_048562)	51	NR_029416	6472	Hs.741179	NM_005412	HPRD:00717	SHMT2	GLYA|HEL-S-51e|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_33248	chr15	41785326	41785487	+	6.40321	NA	promoter-TSS (NM_002220)	promoter-TSS (NM_002220)	-650	NM_002220	3706	Hs.2722	NM_002220	HPRD:00941	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
19-PTNLD28-TUMOR_peak_46529	chr19	982675	982937	+	6.40321	NA	Intergenic	CpG	-1522	NM_024100	57418	Hs.325321	NM_024100	HPRD:18296	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
19-PTNLD28-TUMOR_peak_81851	chr5	123987135	123987272	+	6.40321	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	93602	NM_020747	57507	Hs.266616	NM_020747	HPRD:18357	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
19-PTNLD28-TUMOR_peak_82751	chr5	141061761	141062077	+	6.40321	NA	promoter-TSS (NM_022481)	promoter-TSS (NM_022481)	-119	NM_022481	64411	Hs.726187	NM_022481	HPRD:09441	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_36232	chr16	10522407	10522570	+	6.40144	NA	promoter-TSS (NR_045815)	promoter-TSS (NR_045815)	-237	NR_045815	80063	Hs.513343	NM_024997	HPRD:16517	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_85832	chr6	20247009	20247187	+	6.40144	NA	Intergenic	L1MD2|LINE|L1	-34403	NM_001080480	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_62636	chr20	62587221	62587413	+	6.40144	NA	TTS (NM_020713)	TTS (NM_020713)	483	NM_017859	54963	Hs.504998	NM_017859	HPRD:15607	UCKL1	UCK1-LIKE|UCK1L|URKL1	uridine-cytidine kinase 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_338	chr1	6094626	6094803	+	6.40144	NA	5' UTR (NM_001199860, exon 1 of 16)	5' UTR (NM_001199860, exon 1 of 16)	366	NM_001199860	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_2753	chr1	40938057	40938217	+	6.40144	NA	Intergenic	LTR5A|LTR|ERVK	-5165	NM_198494	339559	Hs.434385	NM_198494	HPRD:15883	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_38666	chr16	72909607	72909825	+	6.40144	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	172558	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_41001	chr17	31400562	31400724	+	6.40144	NA	intron (NM_183377, intron 3 of 9)	intron (NM_183377, intron 3 of 9)	81761	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_102653	chr9	32724189	32724287	+	6.40144	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-59259	NM_212558	401498	Hs.522063	NM_212558		TMEM215	-	transmembrane protein 215	protein-coding
19-PTNLD28-TUMOR_peak_100238	chr8	118342516	118342609	+	6.40144	NA	Intergenic	Intergenic	-190390	NM_001282986	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_33897	chr15	63250861	63250955	+	6.40144	NA	Intergenic	LTR16A1|LTR|ERVL	-83930	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_59268	chr2	241698951	241699241	+	6.40144	NA	intron (NM_004321, intron 23 of 45)	intron (NM_004321, intron 23 of 45)	38133	NM_004321	547	Hs.516802	NM_004321	HPRD:03156	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
19-PTNLD28-TUMOR_peak_11393	chr1	244389873	244390071	+	6.40144	NA	Intergenic	Intergenic	-125965	NM_001276349	200159	Hs.442703	NM_001012970	HPRD:13168	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
19-PTNLD28-TUMOR_peak_87352	chr6	40453252	40453481	+	6.40144	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	101760	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102287	chr9	16172011	16172099	+	6.40144	NA	Intergenic	Intergenic	81050	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_82581	chr5	139331229	139331500	+	6.40144	NA	intron (NM_001184935, intron 1 of 7)	intron (NM_001184935, intron 1 of 7)	91520	NM_004883	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_81810	chr5	122435051	122435434	+	6.40144	NA	intron (NM_001136239, intron 2 of 7)	CpG	10401	NM_001136239	93166	Hs.135118	NM_001136239	ENSG00000061455	PRDM6	-	PR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_33115	chr15	39465015	39465135	+	6.40144	NA	Intergenic	Intergenic	-77810	NM_207445	400360	Hs.376109	NM_207445	HPRD:13437	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_72701	chr3	183198276	183198437	+	6.40144	NA	Intergenic	Intergenic	32917	NR_038301	100505687	Hs.551751	NR_038301	ENSG00000240024	LINC00888	-	long intergenic non-protein coding RNA 888	ncRNA
19-PTNLD28-TUMOR_peak_79191	chr5	18745726	18745822	+	6.39944	NA	Intergenic	HERV17-int|LTR|ERV1	1140607	NM_001291957	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_1690	chr1	26827564	26827837	+	6.39944	NA	Intergenic	Intergenic	-28549	NM_002953	6195	Hs.149957	NM_002953	HPRD:03402	RPS6KA1	HU-1|MAPKAPK1A|RSK|RSK1	ribosomal protein S6 kinase, 90kDa, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_68375	chr3	53080362	53080570	+	6.39666	NA	promoter-TSS (NM_016329)	promoter-TSS (NM_016329)	-377	NM_016329	51460	Hs.343679	NM_016329	HPRD:09539	SFMBT1	RU1|SFMBT|hSFMBT	Scm-like with four mbt domains 1	protein-coding
19-PTNLD28-TUMOR_peak_72812	chr3	184406410	184406628	+	6.39666	NA	Intergenic	Intergenic	23317	NM_022149	64110	Hs.306123	NM_022149	HPRD:14348	MAGEF1	-	melanoma antigen family F, 1	protein-coding
19-PTNLD28-TUMOR_peak_95904	chr7	141502864	141503011	+	6.39666	NA	Intergenic	Intergenic	12920	NM_018980	54429	Hs.675370	NM_018980	HPRD:05453	TAS2R5	T2R5	taste receptor, type 2, member 5	protein-coding
19-PTNLD28-TUMOR_peak_14775	chr10	89265169	89265306	+	6.39666	NA	exon (NM_001178117, exon 1 of 3)	exon (NM_001178117, exon 1 of 3)	1014	NM_004897	9562	Hs.121260	NM_004897	HPRD:05652	MINPP1	HIPER1|MINPP2|MIPP	multiple inositol-polyphosphate phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_106512	chr9	135046098	135046208	+	6.39666	NA	intron (NM_032536, intron 2 of 7)	intron (NM_032536, intron 2 of 7)	8819	NM_032536	84628	Hs.163642	NM_032536	HPRD:17650	NTNG2	LHLL9381|Lmnt2|NTNG1|bA479K20.1	netrin G2	protein-coding
19-PTNLD28-TUMOR_peak_28719	chr13	95966806	95966939	+	6.39666	NA	Intergenic	Intergenic	-13185	NM_005845	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_55468	chr2	122821398	122821540	+	6.39666	NA	Intergenic	Intergenic	308348	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_103085	chr9	38968804	38969091	+	6.39666	NA	Intergenic	Intergenic	319353	NM_033655	79937	Hs.128474	NM_033655	HPRD:10842	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_25834	chr12	102255636	102255795	+	6.39666	NA	Intergenic	MER1A|DNA|hAT-Charlie	-15390	NM_018370	55332	Hs.525634	NM_018370	HPRD:07743	DRAM1	DRAM	DNA-damage regulated autophagy modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_46397	chr18	77286150	77286382	+	6.39666	NA	intron (NM_172387, intron 9 of 9)	CpG	125992	NM_172389	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_75030	chr4	40307741	40307896	+	6.39666	NA	Intergenic	Intergenic	-1384	NR_121641	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_1032	chr1	16277324	16277632	+	6.39666	NA	intron (NM_001287604, intron 2 of 15)	intron (NM_001287604, intron 2 of 15)	25149	NM_001287603	7709	Hs.433764	NM_003443	HPRD:04968	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_22476	chr12	2405187	2405346	+	6.39666	NA	intron (NM_001129832, intron 3 of 47)	intron (NM_001129832, intron 3 of 47)	26324	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_66952	chr3	16285676	16285898	+	6.39666	NA	Intergenic	Intergenic	20709	NM_001047434	285381	Hs.388087	NM_206831		DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
19-PTNLD28-TUMOR_peak_43592	chr17	74732510	74732802	+	6.39553	NA	promoter-TSS (NM_001242533)	promoter-TSS (NM_001242533)	9	NM_001242534	79157	Hs.73965	NM_024311	HPRD:13281	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_59256	chr2	241499944	241500493	+	6.39553	NA	exon (NM_001033575, exon 1 of 3)	exon (NM_001033575, exon 1 of 3)	747	NM_001033575	285193	Hs.369297	NM_001033575	HPRD:18773	DUSP28	DUSP26|VHP	dual specificity phosphatase 28	protein-coding
19-PTNLD28-TUMOR_peak_37461	chr16	33193484	33193614	+	6.39378	NA	Intergenic	CpG	-12034	NR_110897	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_48950	chr19	39341494	39341589	+	6.39266	NA	promoter-TSS (NM_001533)	promoter-TSS (NM_001533)	-924	NM_001533	3191	Hs.644906	NM_001533	HPRD:04360	HNRNPL	HNRPL|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
19-PTNLD28-TUMOR_peak_73753	chr4	668370	668533	+	6.39150	NA	promoter-TSS (NM_007100)	promoter-TSS (NM_007100)	-324	NM_007100	521	Hs.85539	NM_007100	HPRD:03308	ATP5I	ATP5K	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E	protein-coding
19-PTNLD28-TUMOR_peak_84317	chr5	176898312	176898407	+	6.38929	NA	intron (NM_004395, intron 1 of 13)	intron (NM_004395, intron 1 of 13)	1512	NM_080881	1627	Hs.130316	NM_004395	HPRD:00545	DBN1	D0S117E	drebrin 1	protein-coding
19-PTNLD28-TUMOR_peak_89773	chr6	143266298	143266393	+	6.38893	NA	promoter-TSS (NM_006734)	promoter-TSS (NM_006734)	-7	NM_006734	3097	Hs.510172	NM_006734	HPRD:00881	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_2426	chr1	36698440	36698560	+	6.38750	NA	intron (NM_005119, intron 1 of 11)	AluSx|SINE|Alu	8483	NM_005119	9967	Hs.744057	NM_005119	HPRD:07543	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_82588	chr5	139422424	139422631	+	6.38750	NA	exon (NM_013981, exon 1 of 10)	exon (NM_013981, exon 1 of 10)	357	NM_004883	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_39179	chr16	85410153	85410308	+	6.38750	NA	Intergenic	Intergenic	-70299	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_40363	chr17	17109418	17109634	+	6.38750	NA	exon (NM_178836, exon 1 of 2)	exon (NM_178836, exon 1 of 2)	120	NM_178836	201164	Hs.729079	NM_178836	HPRD:14126	PLD6	ZUC	phospholipase D family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_70254	chr3	123538218	123538333	+	6.38750	NA	intron (NM_053025, intron 3 of 33)	LTR40b|LTR|ERVL	64874	NM_053026	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_49251	chr19	43969751	43969870	+	6.38750	NA	promoter-TSS (NM_014400)	promoter-TSS (NM_014400)	21	NM_014400	27076	Hs.631594	NM_014400	HPRD:10783	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_87417	chr6	41410986	41411200	+	6.38750	NA	Intergenic	CpG	-59089	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_104305	chr9	89226387	89226543	+	6.38750	NA	Intergenic	L1PA2|LINE|L1	-257063	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_58104	chr2	208896600	208896691	+	6.38730	NA	Intergenic	Intergenic	-6361	NM_001080475	389072	Hs.159188	NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing, family M, member 3	protein-coding
19-PTNLD28-TUMOR_peak_80857	chr5	77901442	77901653	+	6.38730	NA	intron (NM_005779, intron 2 of 4)	intron (NM_005779, intron 2 of 4)	43101	NM_005779	10184	Hs.79299	NM_005779	HPRD:17272	LHFPL2	-	lipoma HMGIC fusion partner-like 2	protein-coding
19-PTNLD28-TUMOR_peak_46096	chr18	60641003	60641144	+	6.38730	NA	intron (NM_194449, intron 15 of 16)	intron (NM_194449, intron 15 of 16)	258401	NM_194449	23239	Hs.465337	NM_194449	HPRD:15145	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_51601	chr2	25439115	25439313	+	6.38730	NA	Intergenic	CpG	35970	NM_153759	1788	Hs.515840	NM_022552	HPRD:04141	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_104023	chr9	80893413	80893538	+	6.38730	NA	Intergenic	Charlie9|DNA|hAT-Charlie	-18516	NM_058179	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_34157	chr15	68325133	68325245	+	6.38730	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-21383	NM_016166	8554	Hs.162458	NM_016166	HPRD:16029	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT, 1	protein-coding
19-PTNLD28-TUMOR_peak_9095	chr1	199654619	199654726	+	6.38730	NA	Intergenic	Intergenic	-342058	NM_003822	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_30807	chr14	65266880	65267003	+	6.38730	NA	intron (NM_001024858, intron 7 of 34)	intron (NM_001024858, intron 7 of 34)	-14537	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_37655	chr16	48190800	48190888	+	6.38730	NA	Intergenic	Intergenic	-10163	NM_033226	94160	Hs.410111	NM_033226	HPRD:06128	ABCC12	MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
19-PTNLD28-TUMOR_peak_51368	chr2	18301206	18301555	+	6.38730	NA	Intergenic	Intergenic	241456	NM_002252	3790	Hs.414489	NM_002252	HPRD:04865	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
19-PTNLD28-TUMOR_peak_32253	chr14	104346295	104346582	+	6.38730	NA	Intergenic	Intergenic	32380	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	ncRNA
19-PTNLD28-TUMOR_peak_80307	chr5	65684009	65684138	+	6.38730	NA	Intergenic	L1PA3|LINE|L1	123359	NR_105001	101928769	Hs.97903	NR_105001	ENSG00000250313	LOC101928769	-	uncharacterized LOC101928769	ncRNA
19-PTNLD28-TUMOR_peak_81532	chr5	111166147	111166388	+	6.38730	NA	intron (NM_001142474, intron 2 of 3)	HERVL40-int|LTR|ERVL	-72352	NM_001142476	9315	Hs.36053	NM_004772	HPRD:09545	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
19-PTNLD28-TUMOR_peak_22434	chr12	1684647	1684959	+	6.38730	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	18528	NM_152441	144699	Hs.367956	NM_152441	HPRD:10949	FBXL14	Fbl14	F-box and leucine-rich repeat protein 14	protein-coding
19-PTNLD28-TUMOR_peak_99106	chr8	69655648	69655989	+	6.38730	NA	intron (NM_052958, intron 10 of 13)	L1PA3|LINE|L1	360607	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LOC100505718	-	uncharacterized LOC100505718	ncRNA
19-PTNLD28-TUMOR_peak_75476	chr4	58433893	58433981	+	6.38730	NA	Intergenic	L1HS|LINE|L1	-457386	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_53286	chr2	69423656	69423759	+	6.38730	NA	intron (NM_032208, intron 17 of 17)	intron (NM_032208, intron 17 of 17)	92893	NR_036073	100423030		NR_036073		MIR3126	-	microRNA 3126	ncRNA
19-PTNLD28-TUMOR_peak_33813	chr15	60420317	60420485	+	6.38730	NA	Intergenic	Intergenic	123980	NM_012182	27023	Hs.734475	NM_012182	HPRD:07017	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
19-PTNLD28-TUMOR_peak_88182	chr6	64229280	64229370	+	6.38730	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-52592	NM_003463	7803	Hs.227777	NM_003463	HPRD:03349	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding
19-PTNLD28-TUMOR_peak_99453	chr8	89161530	89161635	+	6.38730	NA	intron (NM_005941, intron 4 of 9)	L1PA2|LINE|L1	178135	NM_005941	4325	Hs.492187	NM_005941		MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_50153	chr19	53219345	53219520	+	6.38730	NA	5' UTR (NM_030972, exon 4 of 7)	5' UTR (NM_030972, exon 4 of 7)	13703	NM_030972	81856	Hs.143951	NM_030972	HPRD:15872	ZNF611	-	zinc finger protein 611	protein-coding
19-PTNLD28-TUMOR_peak_69585	chr3	107515742	107515903	+	6.38730	NA	intron (NM_001276286, intron 14 of 16)	intron (NM_001276286, intron 14 of 16)	81093	NR_024276	151658	Hs.159043	NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
19-PTNLD28-TUMOR_peak_60397	chr20	30073524	30073819	+	6.38730	NA	promoter-TSS (NR_024358)	promoter-TSS (NR_024358)	90	NR_024358	140875	Hs.283478	NR_024358	ENSG00000233354	LINC00028	C20orf93|NCRNA00028|dJ1093G12.6	long intergenic non-protein coding RNA 28	ncRNA
19-PTNLD28-TUMOR_peak_74464	chr4	9876864	9876990	+	6.38730	NA	intron (NM_001001290, intron 11 of 12)	intron (NM_001001290, intron 11 of 12)	93669	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_98330	chr8	39853641	39853800	+	6.38730	NA	intron (NM_194294, intron 8 of 10)	LTR13|LTR|ERVK	61246	NM_194294	169355	Hs.676257	NM_194294	HPRD:14113	IDO2	INDOL1	indoleamine 2,3-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_75743	chr4	77118253	77118428	+	6.38678	NA	intron (NM_005506, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	16712	NM_005506	950	Hs.349656	NM_005506	HPRD:03772	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_108786	chrX	75365464	75365641	+	6.38583	NA	Intergenic	CpG	-27212	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_105117	chr9	107753504	107753602	+	6.38583	NA	Intergenic	Intergenic	-63026	NM_005502	19	Hs.659274	NM_005502	HPRD:02501	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_20310	chr11	79151727	79151871	+	6.37652	NA	promoter-TSS (NM_001098816)	promoter-TSS (NM_001098816)	-104	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_21737	chr11	122527140	122527337	+	6.37652	NA	intron (NM_032873, intron 1 of 13)	CpG	840	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_52792	chr2	54197502	54197745	+	6.37575	NA	intron (NM_014614, intron 1 of 46)	intron (NM_014614, intron 1 of 46)	354	NM_014614	23198	Hs.413801	NM_014614	HPRD:09652	PSME4	PA200	proteasome (prosome, macropain) activator subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_11044	chr1	234999405	234999523	+	6.37575	NA	Intergenic	Intergenic	139675	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_57128	chr2	177025237	177025335	+	6.37467	NA	Intergenic	CpG	-3519	NM_006898	3232	Hs.93574	NM_006898	HPRD:00863	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
19-PTNLD28-TUMOR_peak_14474	chr10	79605031	79605119	+	6.37420	NA	intron (NM_004747, intron 5 of 31)	MIR3|SINE|MIR	81273	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_8209	chr1	172387112	172387210	+	6.37420	NA	Intergenic	Intergenic	-2667	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_33539	chr15	50647163	50647258	+	6.37420	NA	promoter-TSS (NR_026891)	promoter-TSS (NR_026891)	-134	NR_026891	55056	Hs.511316	NM_017976		FLJ10038	-	uncharacterized protein FLJ10038	ncRNA
19-PTNLD28-TUMOR_peak_15488	chr10	106098204	106098475	+	6.37420	NA	promoter-TSS (NM_001272013)	promoter-TSS (NM_001272013)	-88	NM_001272013	85450	Hs.523252	NM_033397		ITPRIP	DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_87661	chr6	44067962	44068056	+	6.37420	NA	Intergenic	Intergenic	27182	NM_032111	64928	Hs.311190	NM_032111	HPRD:14741	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32	mitochondrial ribosomal protein L14	protein-coding
19-PTNLD28-TUMOR_peak_109050	chrX	103677141	103677234	+	6.37420	NA	Intergenic	Intergenic	-133809	NM_017416	26280	Hs.675519	NM_017416	HPRD:02231	IL1RAPL2	IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1	interleukin 1 receptor accessory protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_43913	chr17	78833195	78833375	+	6.37420	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-53853	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
19-PTNLD28-TUMOR_peak_33752	chr15	58844586	58844676	+	6.37420	NA	intron (NM_000236, intron 6 of 8)	intron (NM_000236, intron 6 of 8)	-53697	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_89931	chr6	149866520	149866668	+	6.37420	NA	intron (NM_139126, intron 1 of 12)	intron (NM_139126, intron 1 of 12)	644	NM_139126	85313	Hs.744238	NM_139126	HPRD:07606	PPIL4	HDCME13P	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding
19-PTNLD28-TUMOR_peak_86788	chr6	33025651	33025740	+	6.37420	NA	Intergenic	Intergenic	15759	NM_033554	3113	Hs.347270	NM_033554	HPRD:00835	HLA-DPA1	DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_23124	chr12	12944988	12945100	+	6.37420	NA	TTS (NM_001130415)	TTS (NM_001130415)	6503	NM_030817	81575	Hs.23388	NM_030817	HPRD:13153	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_8918	chr1	186649776	186649904	+	6.37420	NA	promoter-TSS (NM_000963)	promoter-TSS (NM_000963)	54	NR_125801	103752588	Hs.441636	NR_125801		PACERR	PACER|PTGS2-AS1	PTGS2 antisense NFKB1 complex-mediated expression regulator RNA	ncRNA
19-PTNLD28-TUMOR_peak_94939	chr7	117355925	117356115	+	6.37420	NA	intron (NM_033427, intron 22 of 22)	intron (NM_033427, intron 22 of 22)	157541	NM_033427	83992	Hs.592285	NM_033427	HPRD:09890	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_22730	chr12	6383358	6383468	+	6.37169	NA	Intergenic	Intergenic	-36189	NM_018173	55200	Hs.631660	NM_018173	HPRD:07692	PLEKHG6	MyoGEF	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding
19-PTNLD28-TUMOR_peak_107105	chrUn_gl000220	97041	97157	+	6.37169	NA	promoter-TSS (NR_038958)	promoter-TSS (NR_038958)	-30	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
19-PTNLD28-TUMOR_peak_22069	chr11	128763503	128763881	+	6.36949	NA	intron (NM_000890, intron 1 of 2)	intron (NM_000890, intron 1 of 2)	2379	NM_000890	3762	Hs.444595	NM_000890		KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding
19-PTNLD28-TUMOR_peak_60310	chr20	25237285	25237455	+	6.36807	NA	intron (NM_002862, intron 1 of 19)	intron (NM_002862, intron 1 of 19)	8664	NM_002862	5834	Hs.368157	NM_002862	HPRD:00720	PYGB	GPBB	phosphorylase, glycogen; brain	protein-coding
19-PTNLD28-TUMOR_peak_82541	chr5	139023077	139023235	+	6.36807	NA	Intergenic	Intergenic	-5145	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_47067	chr19	8510501	8510691	+	6.36807	NA	intron (NM_001297418, intron 1 of 13)	CpG	793	NM_031203	4670	Hs.465808	NM_005968	HPRD:01188	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
19-PTNLD28-TUMOR_peak_53848	chr2	86114873	86114999	+	6.36807	NA	intron (NM_003896, intron 1 of 6)	intron (NM_003896, intron 1 of 6)	1221	NM_003896	8869	Hs.415117	NM_003896	HPRD:05098	ST3GAL5	SATI|SIAT9|SIATGM3S|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_42538	chr17	56031873	56032005	+	6.36384	NA	intron (NM_001271875, intron 1 of 10)	CpG	745	NM_001271875	404093	Hs.46679	NM_001271875	HPRD:13098	CUEDC1	-	CUE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_102387	chr9	19493249	19493566	+	6.36384	NA	Intergenic	Intergenic	84482	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_64565	chr22	21904700	21904936	+	6.36384	NA	exon (NM_001128635, exon 1 of 1).2	exon (NM_001128635, exon 1 of 1).2	555	NM_001128635	440804	Hs.568257	NM_001128635	ENSG00000196934	RIMBP3B	RIM-BP3.2|RIM-BP3.B|RIMBP3.2	RIMS binding protein 3B	protein-coding
19-PTNLD28-TUMOR_peak_70663	chr3	128673844	128673986	+	6.36347	NA	Intergenic	SVA_F|Other|Other	39071	NM_020741	57501	Hs.518247	NM_020741	ENSG00000114656	KIAA1257	-	KIAA1257	protein-coding
19-PTNLD28-TUMOR_peak_74699	chr4	20253394	20253524	+	6.36347	NA	Intergenic	CpG	-1728	NM_001289135	9353	Hs.29802	NM_004787	HPRD:04776	SLIT2	SLIL3|Slit-2	slit homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_70271	chr3	123813456	123813617	+	6.36347	NA	promoter-TSS (NM_003947)	promoter-TSS (NM_003947)	-22	NR_028136	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_1402	chr1	22714446	22714595	+	6.36347	NA	Intergenic	Intergenic	-63824	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_40962	chr17	30411778	30411926	+	6.36347	NA	Intergenic	Intergenic	44497	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_17315	chr11	13360080	13360207	+	6.36347	NA	intron (NM_001178, intron 3 of 19)	intron (NM_001178, intron 3 of 19)	60869	NM_001297722	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_49495	chr19	46946243	46946564	+	6.36347	NA	Intergenic	MER51A|LTR|ERV1	28417	NM_018215	55228	Hs.8395	NM_018215	HPRD:08552	PNMAL1	-	paraneoplastic Ma antigen family-like 1	protein-coding
19-PTNLD28-TUMOR_peak_98110	chr8	33167021	33167174	+	6.36347	NA	Intergenic	MIRc|SINE|MIR	163567	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_104647	chr9	96065094	96065199	+	6.36343	NA	intron (NM_006648, intron 25 of 28)	intron (NM_006648, intron 25 of 28)	43550	NM_001098808	445577	Hs.575636	NM_001098808	ENSG00000204352	C9orf129	bA165J3.3	chromosome 9 open reading frame 129	protein-coding
19-PTNLD28-TUMOR_peak_4076	chr1	64637524	64637858	+	6.36343	NA	intron (NM_005012, intron 8 of 8)	intron (NM_005012, intron 8 of 8)	-31799	NM_152489	148581	Hs.388746	NM_152489	HPRD:14599	UBE2U	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding
19-PTNLD28-TUMOR_peak_46933	chr19	6753786	6753926	+	6.36343	NA	intron (NM_005490, intron 8 of 9)	intron (NM_005490, intron 8 of 9)	13667	NM_005490	10045	Hs.439645	NM_005490	HPRD:05283	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_102069	chr9	5375882	5375970	+	6.36343	NA	intron (NM_018465, intron 3 of 5)	L1MB3|LINE|L1	-36053	NM_006911	6013	Hs.368996	NM_006911	HPRD:01560	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
19-PTNLD28-TUMOR_peak_11177	chr1	237098002	237098090	+	6.36343	NA	Intergenic	HERVH-int|LTR|ERV1	69672	NM_001276687	645745	Hs.632513	NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H-like 1	protein-coding
19-PTNLD28-TUMOR_peak_108678	chrX	70712671	70712846	+	6.36343	NA	promoter-TSS (NR_002226)	promoter-TSS (NR_002226)	-459	NR_002226	27160	Hs.721806	NR_002226		INGX	ING1-like|ING2	inhibitor of growth family, X-linked, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53265	chr2	68907015	68907234	+	6.36343	NA	Intergenic	L1PA3|LINE|L1	34170	NM_138964	10887	Hs.683430	NM_138964	HPRD:08452	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_56717	chr2	164064381	164064470	+	6.36343	NA	Intergenic	Intergenic	-369168	NM_033272	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_93087	chr7	70838145	70838233	+	6.36343	NA	intron (NM_022479, intron 2 of 10)	LTR58|LTR|ERV1	-65433	NR_037477	100500836		NR_037477	miRBase:MI0016419	MIR3914-1	-	microRNA 3914-1	ncRNA
19-PTNLD28-TUMOR_peak_11248	chr1	239885398	239885658	+	6.36343	NA	intron (NM_000740, intron 3 of 4)	intron (NM_000740, intron 3 of 4)	-3109	NR_103776	100506915	Hs.667175	NR_103776	ENSG00000233355	CHRM3-AS2	-	CHRM3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_69564	chr3	106936165	106936347	+	6.36343	NA	intron (NR_028303, intron 1 of 3)	L1MB8|LINE|L1	23229	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_49050	chr19	40623835	40624008	+	6.36343	NA	Intergenic	SVA_F|Other|Other	-27076	NM_001142579	284323	Hs.115140	NM_001010880	HPRD:17336	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
19-PTNLD28-TUMOR_peak_11483	chr1	246171911	246172004	+	6.36343	NA	intron (NM_022743, intron 5 of 11)	intron (NM_022743, intron 5 of 11)	408757	NM_022743	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_84178	chr5	174921423	174921563	+	6.36343	NA	intron (NM_022754, intron 2 of 10)	AluSq|SINE|Alu	15979	NM_022754	94081	Hs.369440	NM_022754	HPRD:18044	SFXN1	-	sideroflexin 1	protein-coding
19-PTNLD28-TUMOR_peak_37998	chr16	56883000	56883099	+	6.36343	NA	Intergenic	Intergenic	-9381	NR_029680	406930		NR_029680	miRBase:MI0000455	MIR138-2	MIRN138-2	microRNA 138-2	ncRNA
19-PTNLD28-TUMOR_peak_53732	chr2	84944149	84944316	+	6.36343	NA	intron (NM_001370, intron 58 of 76)	intron (NM_001370, intron 58 of 76)	164137	NM_001080824	129293	Hs.469134	NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_19567	chr11	67873973	67874376	+	6.36343	NA	intron (NM_001277, intron 1 of 11)	intron (NM_001277, intron 1 of 11)	14684	NM_212469	1119	Hs.77221	NM_001277	HPRD:00327	CHKA	CHK|CK|CKI|EK	choline kinase alpha	protein-coding
19-PTNLD28-TUMOR_peak_84999	chr6	4666152	4666262	+	6.36343	NA	Intergenic	L3|LINE|CR1	-40186	NR_026590	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_38895	chr16	79883137	79883385	+	6.36343	NA	Intergenic	Intergenic	54115	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_29341	chr14	21125913	21126045	+	6.36343	NA	Intergenic	Intergenic	-16129	NM_001001968	341799	Hs.513132	NM_001001968	HPRD:17779	OR6S1	OR14-37|OR6S1Q	olfactory receptor, family 6, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_51559	chr2	24163712	24163887	+	6.36172	NA	intron (NM_181713, intron 1 of 6)	CpG	423	NM_181713	165324	Hs.591576	NM_181713		UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
19-PTNLD28-TUMOR_peak_94874	chr7	112580325	112580424	+	6.36172	NA	promoter-TSS (NM_152556)	promoter-TSS (NM_152556)	-442	NM_152556	154743	Hs.489734	NM_152556	HPRD:08108	C7orf60	-	chromosome 7 open reading frame 60	protein-coding
19-PTNLD28-TUMOR_peak_37926	chr16	55535971	55536160	+	6.36172	NA	intron (NM_004530, intron 11 of 12)	intron (NM_004530, intron 11 of 12)	-6848	NM_017839	54947	Hs.460857	NM_017839	HPRD:07913	LPCAT2	AYTL1|LysoPAFAT	lysophosphatidylcholine acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_99374	chr8	85533580	85533834	+	6.36172	NA	intron (NM_001100392, intron 3 of 9)	L1PA3|LINE|L1	-84455	NM_001287244	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_1020	chr1	16127763	16127882	+	6.36080	NA	Intergenic	L2b|LINE|L2	6372	NM_001089591	440567	Hs.568229	NM_001089591		UQCRHL	-	ubiquinol-cytochrome c reductase hinge protein-like	protein-coding
19-PTNLD28-TUMOR_peak_88046	chr6	53659963	53660249	+	6.36063	NA	exon (NM_018214, exon 1 of 14)	exon (NM_018214, exon 1 of 14)	328	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_6298	chr1	145346611	145346798	+	6.36063	NA	intron (NM_001039703, intron 52 of 85)	intron (NM_001039703, intron 52 of 85)	53333	NM_001039703	100132406	Hs.714127	NM_001039703	ENSG00000163386	NBPF10	AB6|AG1|NBPF9	neuroblastoma breakpoint family, member 10	protein-coding
19-PTNLD28-TUMOR_peak_121	chr1	1206322	1206482	+	6.35967	NA	intron (NM_194458, intron 1 of 6)	intron (NM_194458, intron 1 of 6)	2832	NM_058167	118424	Hs.191987	NM_058167	HPRD:15600	UBE2J2	NCUBE-2|NCUBE2|PRO2121	ubiquitin-conjugating enzyme E2, J2	protein-coding
19-PTNLD28-TUMOR_peak_3021	chr1	44023501	44023630	+	6.35967	NA	intron (NM_130440, intron 5 of 32)	intron (NM_130440, intron 5 of 32)	27018	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_32183	chr14	103595051	103595165	+	6.35967	NA	intron (NM_006291, intron 2 of 10)	intron (NM_006291, intron 2 of 10)	2444	NM_006291	7127	Hs.525607	NM_006291	HPRD:04487	TNFAIP2	B94|EXOC3L3	tumor necrosis factor, alpha-induced protein 2	protein-coding
19-PTNLD28-TUMOR_peak_47453	chr19	12897281	12897369	+	6.35333	NA	Intergenic	Intergenic	-4985	NM_002229	3726	Hs.25292	NM_002229	HPRD:01303	JUNB	AP-1	jun B proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_2085	chr1	32305410	32305502	+	6.35227	NA	Intergenic	L1M7|LINE|L1	-23804	NM_144569	90853	Hs.62604	NM_144569	HPRD:08057	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_2086	chr1	32305703	32305791	+	6.35227	NA	Intergenic	AluJb|SINE|Alu	-24095	NM_144569	90853	Hs.62604	NM_144569	HPRD:08057	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_37392	chr16	32111584	32111760	+	6.35227	NA	Intergenic	MER54A|LTR|ERVL	87762	NR_109773	100289574	Hs.531536	NR_109773	ENSG00000230267	HERC2P4	D16F37S5	hect domain and RLD 2 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_94216	chr7	99097424	99097520	+	6.34979	NA	exon (NM_032164, exon 1 of 3)	exon (NM_032164, exon 1 of 3)	405	NM_032164	84124	Hs.386324	NM_032164	HPRD:18333	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
19-PTNLD28-TUMOR_peak_8744	chr1	183261008	183261137	+	6.34979	NA	intron (NM_170706, intron 3 of 10)	intron (NM_170706, intron 3 of 10)	12937	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_49620	chr19	48112333	48112440	+	6.34979	NA	intron (NM_015711, intron 1 of 14)	CpG	933	NM_015711	29998	Hs.97244	NM_015711	HPRD:09296	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding
19-PTNLD28-TUMOR_peak_18888	chr11	61461537	61461648	+	6.34921	NA	intron (NM_006133, intron 1 of 19)	MIR3|SINE|MIR	13687	NM_006133	747	Hs.241564	NM_006133	HPRD:07092	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase, alpha	protein-coding
19-PTNLD28-TUMOR_peak_93482	chr7	75952276	75952367	+	6.34605	NA	Intergenic	Intergenic	20446	NM_001540	3315	Hs.520973	NM_001540	HPRD:09076	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock 27kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_103824	chr9	74930736	74930962	+	6.34507	NA	TTS (NR_110953)	TTS (NR_110953)	10497	NR_110952	100507540	Hs.54957	NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
19-PTNLD28-TUMOR_peak_97555	chr8	22014680	22014831	+	6.34507	NA	promoter-TSS (NM_139278)	promoter-TSS (NM_139278)	-411	NM_139278	203190	Hs.33470	NM_139278	HPRD:06432	LGI3	LGIL4	leucine-rich repeat LGI family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_33332	chr15	43621923	43622354	+	6.34507	NA	promoter-TSS (NM_001159280)	promoter-TSS (NM_001159280)	-416	NM_001159280	161823	Hs.533913	NM_001012969	HPRD:11779	ADAL	-	adenosine deaminase-like	protein-coding
19-PTNLD28-TUMOR_peak_32822	chr15	30708266	30708487	+	6.34507	NA	Intergenic	MER20|DNA|hAT-Charlie	-1913	NM_001282484	101059918		NM_001282484		GOLGA8R	-	golgin A8 family, member R	protein-coding
19-PTNLD28-TUMOR_peak_65509	chr22	38852989	38853243	+	6.34507	NA	Intergenic	L2c|LINE|L2	-1911	NM_152868	3761	Hs.32505	NM_004981	HPRD:02738	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding
19-PTNLD28-TUMOR_peak_42855	chr17	61970164	61970254	+	6.34507	NA	Intergenic	Intergenic	3812	NM_001317	1442	Hs.654390	NM_001317	HPRD:08350	CSH1	CS-1|CSA|CSMT|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1 (placental lactogen)	protein-coding
19-PTNLD28-TUMOR_peak_14026	chr10	71093122	71093265	+	6.34507	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	14590	NM_000188	3098	Hs.370365	NM_000188	HPRD:00809	HK1	HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1	hexokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_94438	chr7	101186233	101186365	+	6.34507	NA	intron (NM_133457, intron 5 of 12)	intron (NM_133457, intron 5 of 12)	25987	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_105568	chr9	116918942	116919087	+	6.34507	NA	intron (NM_032888, intron 1 of 60)	MIR3|SINE|MIR	783	NM_032888	85301	Hs.494892	NM_032888		COL27A1	STLS	collagen, type XXVII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_4825	chr1	91316300	91316394	+	6.34507	NA	Intergenic	CpG	-133553	NM_020063	343472	Hs.451956	NM_020063		BARHL2	-	BarH-like homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_94425	chr7	101079856	101080285	+	6.34507	NA	intron (NM_133457, intron 2 of 12)	AluSx|SINE|Alu	73969	NM_001278563	136227	Hs.654854	NM_133457	HPRD:16405	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen, type XXVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_19828	chr11	71712709	71712797	+	6.34256	NA	3' UTR (NM_005699, exon 4 of 4)	3' UTR (NM_005699, exon 4 of 4)	1780	NM_001145055	10068	Hs.591967	NM_005699	HPRD:04984	IL18BP	IL18BPa	interleukin 18 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_47549	chr19	13885454	13885601	+	6.34256	NA	TTS (NM_032285)	TTS (NM_032285)	270	NM_014047	28974	Hs.231616	NM_014047		C19orf53	LYDG10	chromosome 19 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_43394	chr17	73197925	73198035	+	6.34256	NA	Intergenic	MER20|DNA|hAT-Charlie	-3617	NM_024844	79902	Hs.362817	NM_024844	HPRD:01363	NUP85	Nup75	nucleoporin 85kDa	protein-coding
19-PTNLD28-TUMOR_peak_49271	chr19	44174344	44174515	+	6.34256	NA	promoter-TSS (NM_002659)	promoter-TSS (NM_002659)	69	NM_001005377	5329	Hs.466871	NM_002659	HPRD:01421	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
19-PTNLD28-TUMOR_peak_17387	chr11	15136271	15136369	+	6.34251	NA	promoter-TSS (NM_001042536)	promoter-TSS (NM_001042536)	-164	NM_001042536	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_5633	chr1	113734456	113734606	+	6.34251	NA	Intergenic	Intergenic	14344	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_36870	chr16	23818545	23818660	+	6.34251	NA	Intergenic	Intergenic	-28698	NM_002738	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_37044	chr16	28550635	28550792	+	6.34251	NA	promoter-TSS (NM_012385)	promoter-TSS (NM_012385)	-218	NM_001042483	26471	Hs.513463	NM_012385	HPRD:17814	NUPR1	COM1|P8	nuclear protein, transcriptional regulator, 1	protein-coding
19-PTNLD28-TUMOR_peak_7408	chr1	157347171	157347263	+	6.34251	NA	Intergenic	Intergenic	175093	NM_031281	83416	Hs.415950	NM_031281	HPRD:16169	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor-like 5	protein-coding
19-PTNLD28-TUMOR_peak_56412	chr2	155549613	155549701	+	6.34251	NA	Intergenic	Intergenic	-5436	NM_001260508	3760	Hs.591606	NM_002239	HPRD:03323	KCNJ3	GIRK1|KGA|KIR3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
19-PTNLD28-TUMOR_peak_61636	chr20	47552465	47552705	+	6.34251	NA	intron (NM_006420, intron 1 of 38)	SVA_D|Other|Other	14310	NM_006420	10564	Hs.62578	NM_006420	HPRD:09250	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
19-PTNLD28-TUMOR_peak_103380	chr9	46920369	46920463	+	6.34251	NA	Intergenic	Intergenic	156625	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_106619	chr9	136912412	136912500	+	6.34251	NA	intron (NM_007371, intron 6 of 11)	intron (NM_007371, intron 6 of 11)	20685	NM_007371	8019	Hs.522472	NM_007371	HPRD:03327	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_92465	chr7	47823696	47823795	+	6.34251	NA	intron (NM_138295, intron 56 of 56)	intron (NM_138295, intron 56 of 56)	-11144	NM_025031	80099	Hs.287647	NM_025031	HPRD:08635	C7orf69	-	chromosome 7 open reading frame 69	protein-coding
19-PTNLD28-TUMOR_peak_106859	chr9	140376749	140376860	+	6.34251	NA	intron (NM_152286, intron 20 of 33)	L1MC1|LINE|L1	-23018	NM_001130969	26012	Hs.455336	NM_015537	HPRD:10485	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
19-PTNLD28-TUMOR_peak_82087	chr5	131637714	131637933	+	6.34251	NA	intron (NM_003059, intron 1 of 9)	intron (NM_003059, intron 1 of 9)	7678	NM_003059	6583	Hs.310591	NM_003059	HPRD:09171	SLC22A4	OCTN1	solute carrier family 22 (organic cation/zwitterion transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_48695	chr19	36089527	36089725	+	6.34251	NA	intron (NR_110750, intron 1 of 2)	LOR1-int|LTR|ERV1	829	NR_110750	102723617	Hs.579904	NR_110750		LOC102723617	-	uncharacterized LOC102723617	ncRNA
19-PTNLD28-TUMOR_peak_81502	chr5	110239804	110240006	+	6.34251	NA	Intergenic	Intergenic	165151	NM_138773	91137	Hs.75639	NM_138773	HPRD:14283	SLC25A46	-	solute carrier family 25, member 46	protein-coding
19-PTNLD28-TUMOR_peak_107369	chrX	2303345	2303550	+	6.34251	NA	intron (NM_145177, intron 3 of 6)	MER117|DNA|hAT-Charlie	115133	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94085	chr7	97086343	97086462	+	6.34251	NA	Intergenic	Intergenic	-274869	NM_003182	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_60148	chr20	21868341	21868429	+	6.34251	NA	Intergenic	L1PA2|LINE|L1	-166343	NR_038394	100270679	Hs.385748	NR_038394		LINC01432	-	long intergenic non-protein coding RNA 1432	ncRNA
19-PTNLD28-TUMOR_peak_32735	chr15	29034389	29034510	+	6.34251	NA	promoter-TSS (NR_037599)	promoter-TSS (NR_037599)	-531	NR_037599	646278	Hs.590143	NR_037599		PDCD6IPP2	-	PDCD6IP pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_25006	chr12	65138929	65139036	+	6.34251	NA	intron (NM_002076, intron 4 of 13)	intron (NM_002076, intron 4 of 13)	14244	NM_002076	2799	Hs.334534	NM_002076	HPRD:09637	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
19-PTNLD28-TUMOR_peak_110105	chrY	2253345	2253550	+	6.34251	NA	intron (NM_145177, intron 3 of 6).2	MER117|DNA|hAT-Charlie	115133	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81099	chr5	89891021	89891123	+	6.34251	NA	intron (NR_003149, intron 1 of 89)	SVA_D|Other|Other	36455	NR_003149	84059	Hs.591777	NM_032119	HPRD:09111	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
19-PTNLD28-TUMOR_peak_99371	chr8	85382135	85382223	+	6.34251	NA	intron (NM_001100392, intron 2 of 9)	L1PA2|LINE|L1	-235983	NM_001287244	138046	Hs.121663	NM_173848	HPRD:11236	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_33097	chr15	38856739	38857065	+	6.34251	NA	5' UTR (NM_001128602, exon 1 of 16)	5' UTR (NM_001128602, exon 1 of 16)	105	NM_005739	10125	Hs.591127	NM_005739	HPRD:04909	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_40152	chr17	9264630	9264829	+	6.34251	NA	intron (NM_004853, intron 7 of 7)	intron (NM_004853, intron 7 of 7)	-182294	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19-PTNLD28-TUMOR_peak_82076	chr5	131560988	131561495	+	6.34251	NA	intron (NM_001017974, intron 1 of 14)	intron (NM_001017974, intron 1 of 14)	1694	NM_004199	8974	Hs.519568	NM_004199	HPRD:11862	P4HA2	-	prolyl 4-hydroxylase, alpha polypeptide II	protein-coding
19-PTNLD28-TUMOR_peak_43303	chr17	72286688	72286808	+	6.34251	NA	intron (NM_023036, intron 5 of 13)	MIR|SINE|MIR	16362	NM_001172810	64446	Hs.147472	NM_023036	HPRD:12019	DNAI2	CILD9|DIC2	dynein, axonemal, intermediate chain 2	protein-coding
19-PTNLD28-TUMOR_peak_86783	chr6	32977196	32977499	+	6.34251	NA	promoter-TSS (NM_002119).6	promoter-TSS (NM_002119).6	42	NM_002119	3111	Hs.631991	NM_002119	HPRD:00837	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
19-PTNLD28-TUMOR_peak_80987	chr5	81647726	81647888	+	6.34251	NA	Intergenic	Intergenic	72526	NM_001017971	92270	Hs.729805	NM_001017971	HPRD:18710	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_6777	chr1	151445978	151446143	+	6.34251	NA	Intergenic	CpG	-14119	NM_001194938	23126	Hs.489873	NM_015100	HPRD:11445	POGZ	ZNF280E|ZNF635|ZNF635m	pogo transposable element with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_32428	chr14	107256752	107256915	+	6.33569	NA	Intergenic	L1PBb|LINE|L1	318388	NR_027457	338005	Hs.322826	NR_027457	ENSG00000187156	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
19-PTNLD28-TUMOR_peak_82825	chr5	141980259	141980446	+	6.33569	NA	exon (NM_001257207, exon 4 of 5)	exon (NM_001257207, exon 4 of 5)	13374	NM_033137	2246	Hs.483635	NM_000800	HPRD:00567	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1 (acidic)	protein-coding
19-PTNLD28-TUMOR_peak_73917	chr4	2664468	2664593	+	6.33569	NA	intron (NM_001256667, intron 9 of 19)	intron (NM_001256667, intron 9 of 19)	37371	NM_001256666	8603	Hs.652364	NM_003704	HPRD:09850	FAM193A	C4orf8	family with sequence similarity 193, member A	protein-coding
19-PTNLD28-TUMOR_peak_86778	chr6	32937574	32937698	+	6.33534	NA	intron (NM_005104, intron 1 of 12)	intron (NM_005104, intron 1 of 12)	-1029	NM_001291986	6046	Hs.75243	NM_005104	HPRD:03326	BRD2	D6S113E|FSH|FSRG1|NAT|RING3|RNF3	bromodomain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_82812	chr5	141705306	141705402	+	6.33514	NA	promoter-TSS (NM_030964)	promoter-TSS (NM_030964)	496	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA
19-PTNLD28-TUMOR_peak_6296	chr1	145337167	145337354	+	6.33193	NA	intron (NM_001039703, intron 40 of 85)	intron (NM_001039703, intron 40 of 85)	43889	NM_001039703	100132406	Hs.714127	NM_001039703	ENSG00000163386	NBPF10	AB6|AG1|NBPF9	neuroblastoma breakpoint family, member 10	protein-coding
19-PTNLD28-TUMOR_peak_23224	chr12	14922849	14923020	+	6.33193	NA	TTS (NM_175054)	TTS (NM_175054)	1131	NM_175054	121504	Hs.745457	NM_175054	HPRD:13662	HIST4H4	H4/p	histone cluster 4, H4	protein-coding
19-PTNLD28-TUMOR_peak_85477	chr6	13381813	13382080	+	6.33158	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	26423	NM_001242630	54438	Hs.484686	NM_018988	HPRD:13574	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_79115	chr5	16666707	16666930	+	6.33082	NA	exon (NM_012334, exon 41 of 41)	exon (NM_012334, exon 41 of 41)	-49651	NM_001034850	54463	Hs.481704	NM_019000	HPRD:07879	FAM134B	JK-1|JK1	family with sequence similarity 134, member B	protein-coding
19-PTNLD28-TUMOR_peak_37060	chr16	28712629	28712922	+	6.33082	NA	intron (NM_001199142, intron 1 of 20)	intron (NM_001199142, intron 1 of 20)	-9963	NM_001267574	8663	Hs.567374	NM_003752	HPRD:04889	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3, subunit C	protein-coding
19-PTNLD28-TUMOR_peak_31139	chr14	71283364	71283497	+	6.33082	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-7542	NM_033141	4293	Hs.445496	NM_033141	HPRD:15965	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_59708	chr20	7999812	8000123	+	6.33082	NA	intron (NM_021156, intron 1 of 7)	CpG	426	NM_021156	56255	Hs.169358	NM_021156		TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin-related transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_91341	chr7	15586971	15587155	+	6.33082	NA	intron (NM_001004320, intron 2 of 12)	L1PA2|LINE|L1	14577	NM_001004320	392636	Hs.670634	NM_001004320	HPRD:13362	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding
19-PTNLD28-TUMOR_peak_5965	chr1	120154391	120154519	+	6.33082	NA	Intergenic	Intergenic	-12541	NR_036540	644242	Hs.515383	NR_036540	ENSG00000260941	LINC00622	-	long intergenic non-protein coding RNA 622	ncRNA
19-PTNLD28-TUMOR_peak_65625	chr22	40806388	40806565	+	6.33082	NA	TTS (NM_015705)	TTS (NM_015705)	39881	NM_015705	27352	Hs.474914	NM_015705	HPRD:15285	SGSM3	MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5	small G protein signaling modulator 3	protein-coding
19-PTNLD28-TUMOR_peak_26262	chr12	110707749	110707901	+	6.33082	NA	Intergenic	Intergenic	-11207	NM_001681	488	Hs.506759	NM_001681	HPRD:00161	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
19-PTNLD28-TUMOR_peak_107504	chrX	9534460	9534601	+	6.33082	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	101329	NM_005647	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_86761	chr6	32797409	32797777	+	6.33082	NA	intron (NM_018833, intron 10 of 11).4	intron (NM_018833, intron 10 of 11).4	8954	NM_018833	6891	Hs.502	NM_000544	HPRD:01360	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding
19-PTNLD28-TUMOR_peak_10288	chr1	223538593	223538682	+	6.33029	NA	Intergenic	Intergenic	-1093	NM_001037175	55061	Hs.497841	NM_017982	HPRD:07641	SUSD4	PRO222	sushi domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_65528	chr22	39151474	39151684	+	6.33029	NA	promoter-TSS (NM_001199580)	promoter-TSS (NM_001199580)	-112	NM_001199580	25777	Hs.517622	NM_015374	HPRD:15611	SUN2	UNC84B	Sad1 and UNC84 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_527	chr1	8484209	8484475	+	6.33029	NA	promoter-TSS (NM_001042682)	promoter-TSS (NM_001042682)	-595	NM_001042682	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_75984	chr4	82966012	82966211	+	6.33029	NA	Intergenic	Intergenic	329038	NM_031369	3184	Hs.480073	NM_002138		HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	protein-coding
19-PTNLD28-TUMOR_peak_44501	chr18	9614790	9615019	+	6.33029	NA	promoter-TSS (NM_005134)	promoter-TSS (NM_005134)	99	NR_110773	101927323	Hs.151204	NR_110773	ENSG00000263627	PPP4R1-AS1	-	PPP4R1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_75016	chr4	40058396	40058627	+	6.32910	NA	promoter-TSS (NM_018177)	promoter-TSS (NM_018177)	-13	NM_018177	55728	Hs.391463	NM_018177	HPRD:11382	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_67755	chr3	43106342	43106546	+	6.32574	NA	Intergenic	L1PA2|LINE|L1	41131	NM_032806	84892	Hs.745002	NM_032806	HPRD:07863	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
19-PTNLD28-TUMOR_peak_18908	chr11	61566122	61566217	+	6.32574	NA	TTS (NM_013402)	TTS (NM_013402)	6060	NM_004111	2237	Hs.409065	NM_004111	HPRD:02670	FEN1	FEN-1|MF1|RAD2	flap structure-specific endonuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_29077	chr13	111214237	111214325	+	6.32574	NA	promoter-TSS (NM_017817)	promoter-TSS (NM_017817)	-210	NM_017817	55647	Hs.743563	NM_017817	HPRD:06694	RAB20	-	RAB20, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_58274	chr2	216783028	216783257	+	6.32574	NA	Intergenic	Intergenic	-74883	NR_037195	646324	Hs.655713	NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
19-PTNLD28-TUMOR_peak_90771	chr7	913084	913258	+	6.32574	NA	3' UTR (NM_001171944, exon 17 of 17)	3' UTR (NM_001171944, exon 17 of 17)	-3020	NM_015949	51608	Hs.107387	NM_015949	HPRD:12909	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_17375	chr11	14665735	14665934	+	6.32574	NA	promoter-TSS (NM_148976)	promoter-TSS (NM_148976)	565	NM_000922	5140	Hs.445711	NM_000922	HPRD:03626	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B, cGMP-inhibited	protein-coding
19-PTNLD28-TUMOR_peak_67740	chr3	42838900	42839109	+	6.32574	NA	intron (NM_001099669, intron 1 of 3)	SVA_F|Other|Other	6930	NM_001099668	25994	Hs.593134	NM_014056		HIGD1A	HIG1|RCF1a	HIG1 hypoxia inducible domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_41363	chr17	38358441	38358617	+	6.32574	NA	Intergenic	FRAM|SINE|Alu	8680	NR_106927	102465523		NR_106927		MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
19-PTNLD28-TUMOR_peak_76180	chr4	88157334	88157422	+	6.32574	NA	Intergenic	AluSg|SINE|Alu	-15618	NM_001292007	57563	Hs.106601	NM_020803	HPRD:13928	KLHL8	-	kelch-like family member 8	protein-coding
19-PTNLD28-TUMOR_peak_28769	chr13	98405592	98405698	+	6.32574	NA	Intergenic	L2b|LINE|L2	-200284	NM_002271	3843	Hs.712598	NM_002271	HPRD:03597	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
19-PTNLD28-TUMOR_peak_20589	chr11	93154577	93154729	+	6.32574	NA	intron (NM_181645, intron 13 of 13)	L1HS|LINE|L1	90770	NM_181645	159989	Hs.436625	NM_181645	HPRD:08689	CCDC67	-	coiled-coil domain containing 67	protein-coding
19-PTNLD28-TUMOR_peak_11542	chr1	248020393	248020638	+	6.32574	NA	promoter-TSS (NM_015431)	promoter-TSS (NM_015431)	14	NM_015431	25893	Hs.269151	NM_015431		TRIM58	BIA2	tripartite motif containing 58	protein-coding
19-PTNLD28-TUMOR_peak_77126	chr4	138417867	138418027	+	6.32574	NA	Intergenic	L1PA2|LINE|L1	35705	NM_019035	54510	Hs.591691	NM_019035	HPRD:12205	PCDH18	PCDH68L	protocadherin 18	protein-coding
19-PTNLD28-TUMOR_peak_91631	chr7	23675552	23675688	+	6.32574	NA	intron (NM_138771, intron 3 of 3)	SVA_E|Other|Other	38622	NM_138771	90693	Hs.232296	NM_138771	HPRD:14278	CCDC126	-	coiled-coil domain containing 126	protein-coding
19-PTNLD28-TUMOR_peak_1657	chr1	26490757	26490908	+	6.32574	NA	Intergenic	CpG	5321	NM_024869	79927	Hs.694119	NM_024869	HPRD:07848	FAM110D	GRRP1	family with sequence similarity 110, member D	protein-coding
19-PTNLD28-TUMOR_peak_3005	chr1	43919241	43919467	+	6.32574	NA	exon (NM_001243526, exon 1 of 9)	exon (NM_001243526, exon 1 of 9)	306	NM_031207	81888	Hs.709864	NM_031207	HPRD:11039	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding
19-PTNLD28-TUMOR_peak_8527	chr1	179712337	179712628	+	6.32574	NA	5' UTR (NM_173509, exon 1 of 5)	5' UTR (NM_173509, exon 1 of 5)	184	NM_173509	148753	Hs.729631	NM_173509	HPRD:14454	FAM163A	C1orf76|NDSP	family with sequence similarity 163, member A	protein-coding
19-PTNLD28-TUMOR_peak_76775	chr4	119839725	119839813	+	6.32574	NA	intron (NM_001128934, intron 1 of 4)	intron (NM_001128934, intron 1 of 4)	29773	NM_001128933	171024	Hs.655519	NM_133477	HPRD:15456	SYNPO2	-	synaptopodin 2	protein-coding
19-PTNLD28-TUMOR_peak_39962	chr17	7210869	7210957	+	6.32149	NA	promoter-TSS (NM_001970)	promoter-TSS (NM_001970)	57	NM_001970	1984	Hs.534314	NM_001970	HPRD:02555	EIF5A	EIF-5A|EIF5A1|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
19-PTNLD28-TUMOR_peak_58841	chr2	232545127	232545423	+	6.32149	NA	Intergenic	Intergenic	-27960	NM_002823	5757	Hs.459927	NM_002823	HPRD:01778	PTMA	TMSA	prothymosin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_10704	chr1	229250673	229250977	+	6.32149	NA	Intergenic	Intergenic	-155984	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_91847	chr7	30544036	30544157	+	6.32149	NA	intron (NM_001199815, intron 1 of 3)	CpG	361	NR_037669	79017	Hs.530024	NM_024051	HPRD:12912	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_19354	chr11	65835798	65835950	+	6.32149	NA	intron (NM_006842, intron 21 of 21)	intron (NM_006842, intron 21 of 21)	-1950	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49520	chr19	47217154	47217331	+	6.31789	NA	exon (NM_001079880, exon 3 of 19)	exon (NM_001079880, exon 3 of 19)	335	NM_001079882	25865	Hs.466987	NM_016457	HPRD:09523	PRKD2	PKD2|nPKC-D2	protein kinase D2	protein-coding
19-PTNLD28-TUMOR_peak_29798	chr14	33532081	33532282	+	6.31643	NA	intron (NM_001164749, intron 2 of 11)	intron (NM_001164749, intron 2 of 11)	123722	NM_173159	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_47906	chr19	17523461	17523723	+	6.31643	NA	Intergenic	LTR34|LTR|ERV1	-7064	NM_138401	93343	Hs.515243	NM_138401	HPRD:14298	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
19-PTNLD28-TUMOR_peak_98019	chr8	30137311	30137437	+	6.31643	NA	Intergenic	Intergenic	-29161	NR_039605	100616190		NR_039605		MIR548O2	-	microRNA 548o-2	ncRNA
19-PTNLD28-TUMOR_peak_66972	chr3	16553714	16553813	+	6.31643	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	1459	NM_015150	23180	Hs.98910	NM_015150	HPRD:17950	RFTN1	PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
19-PTNLD28-TUMOR_peak_72228	chr3	169480889	169481011	+	6.31643	NA	Intergenic	Intergenic	1898	NR_001566	7012	Hs.436182	NR_001566	ENSG00000270141	TERC	DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR	telomerase RNA component	ncRNA
19-PTNLD28-TUMOR_peak_32724	chr15	28753720	28753911	+	6.31643	NA	Intergenic	CpG	-17824	NR_039732	100616223		NR_039732	miRBase:MI0016873	MIR4509-1	-	microRNA 4509-1	ncRNA
19-PTNLD28-TUMOR_peak_40029	chr17	7818265	7818390	+	6.31349	NA	non-coding (NR_024349, exon 2 of 2)	non-coding (NR_024349, exon 2 of 2)	938	NR_024349	284023	Hs.744470	NR_024349	ENSG00000179859	LOC284023	-	uncharacterized LOC284023	ncRNA
19-PTNLD28-TUMOR_peak_10332	chr1	224033100	224033400	+	6.31349	NA	intron (NM_001031685, intron 1 of 17)	CpG	424	NM_001031685	7159	Hs.523968	NM_005426	HPRD:11803	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_29618	chr14	24900102	24900274	+	6.31161	NA	intron (NM_001290257, intron 2 of 7)	(CAGAG)n|Simple_repeat|Simple_repeat	1047	NM_001290257	23351	Hs.713590	NM_015299	HPRD:11076	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
19-PTNLD28-TUMOR_peak_70563	chr3	127392162	127392367	+	6.31161	NA	TTS (NM_015720)	TTS (NM_015720)	483	NR_033429	80325	Hs.107812	NM_032548	HPRD:10513	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_36730	chr16	21437607	21437772	+	6.31142	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-1031	NM_130464	23117	Hs.611072	NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family, member B3	protein-coding
19-PTNLD28-TUMOR_peak_64729	chr22	24372407	24372560	+	6.31055	NA	promoter-TSS (NM_001144931)	promoter-TSS (NM_001144931)	-634	NM_001144931	391322	Hs.678440	NM_001144931		LOC391322	-	D-dopachrome tautomerase-like	protein-coding
19-PTNLD28-TUMOR_peak_55011	chr2	113239149	113239318	+	6.31055	NA	promoter-TSS (NM_153712)	promoter-TSS (NM_153712)	-510	NM_153712	150465	Hs.358997	NM_153712		TTL	-	tubulin tyrosine ligase	protein-coding
19-PTNLD28-TUMOR_peak_30233	chr14	51134555	51134651	+	6.31055	NA	exon (NM_021818, exon 1 of 5)	exon (NM_021818, exon 1 of 5)	468	NM_021818	60485	Hs.642842	NM_021818	HPRD:06229	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64714	chr22	24251743	24251861	+	6.31055	NA	Intergenic	MER66D|LTR|ERV1	-10685	NR_038911	284889	Hs.632772	NR_038911		MIF-AS1	-	MIF antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8432	chr1	178024913	178025088	+	6.30996	NA	Intergenic	Intergenic	-17858	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_68552	chr3	57682663	57682814	+	6.30996	NA	Intergenic	L3|LINE|CR1	-3922	NM_152678	201627	Hs.91085	NM_152678	HPRD:08756	DENND6A	AFI1A|FAM116A	DENN/MADD domain containing 6A	protein-coding
19-PTNLD28-TUMOR_peak_2417	chr1	36638723	36638895	+	6.30996	NA	intron (NM_001286365, intron 4 of 15)	intron (NM_001286365, intron 4 of 15)	-17155	NM_001270895	27095	Hs.523131	NM_014408	HPRD:11644	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding
19-PTNLD28-TUMOR_peak_44206	chr18	268782	268891	+	6.30996	NA	promoter-TSS (NM_005131)	promoter-TSS (NM_005131)	-777	NM_005131	9984	Hs.712543	NM_005131	HPRD:09498	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding
19-PTNLD28-TUMOR_peak_7273	chr1	156092752	156092884	+	6.30996	NA	intron (NM_001282626, intron 1 of 11)	intron (NM_001282626, intron 1 of 11)	-3090	NM_001282624	4000	Hs.594444	NM_005572	HPRD:01035	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1	lamin A/C	protein-coding
19-PTNLD28-TUMOR_peak_15926	chr10	120861146	120861285	+	6.30996	NA	Intergenic	Intergenic	-2396	NM_207009	404636	Hs.434241	NM_207009		FAM45A	-	family with sequence similarity 45, member A	protein-coding
19-PTNLD28-TUMOR_peak_96764	chr7	158505075	158505303	+	6.30996	NA	Intergenic	Intergenic	-7667	NM_001281932	54892	Hs.18616	NM_017760	HPRD:10539	NCAPG2	CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding
19-PTNLD28-TUMOR_peak_85018	chr6	5031027	5031188	+	6.30996	NA	Intergenic	MER3|DNA|hAT-Charlie	-26810	NM_001286132	10799	Hs.511756	NM_006638	HPRD:09361	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_56666	chr2	162138663	162138803	+	6.30858	NA	Intergenic	Intergenic	-26053	NM_005805	10213	Hs.740477	NM_005805	HPRD:06208	PSMD14	PAD1|POH1|RPN11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding
19-PTNLD28-TUMOR_peak_85348	chr6	11393331	11393534	+	6.30566	NA	Intergenic	Intergenic	-10851	NR_073131	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_50365	chr19	55881352	55881578	+	6.30566	NA	intron (NM_000641, intron 1 of 4)	intron (NM_000641, intron 1 of 4)	366	NM_001267718	3589	Hs.467304	NM_000641	HPRD:00980	IL11	AGIF|IL-11	interleukin 11	protein-coding
19-PTNLD28-TUMOR_peak_32582	chr15	23452338	23452597	+	6.30566	NA	intron (NM_001271664, intron 9 of 11)	AluJb|SINE|Alu	17397	NR_033350	390535	Hs.454647	NM_001012423	HPRD:17381	GOLGA8EP	GOLGA8E	golgin A8 family, member E, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_32343	chr14	105766998	105767086	+	6.30566	NA	promoter-TSS (NM_001243127)	promoter-TSS (NM_001243127)	-106	NM_001243127	23241	Hs.525626	NM_015197	HPRD:17816	PACS2	PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_46421	chr18	77512275	77512364	+	6.30554	NA	intron (NM_048368, intron 11 of 11)	intron (NM_048368, intron 11 of 11)	70889	NM_001202504	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_101820	chr8	146103800	146104080	+	6.30517	NA	3' UTR (NM_001109689, exon 6 of 6)	3' UTR (NM_001109689, exon 6 of 6)	22906	NM_001109689	58500	Hs.532277	NM_021061	HPRD:15758	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
19-PTNLD28-TUMOR_peak_103459	chr9	66957852	66957950	+	6.30517	NA	Intergenic	TAR1|Satellite|telo	34934	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_106692	chr9	138391467	138391789	+	6.29994	NA	promoter-TSS (NM_016034)	promoter-TSS (NM_016034)	133	NM_001048265	138162	Hs.414028	NM_144654	HPRD:12937	C9orf116	PIERCE1|RbEST47	chromosome 9 open reading frame 116	protein-coding
19-PTNLD28-TUMOR_peak_81676	chr5	115265972	115266084	+	6.29814	NA	Intergenic	LTR10F|LTR|ERV1	-32123	NM_173800	206338	Hs.98288	NM_173800	HPRD:07118	AQPEP	APQ|LVRN	laeverin	protein-coding
19-PTNLD28-TUMOR_peak_88334	chr6	74276862	74276979	+	6.29814	NA	Intergenic	Intergenic	-46165	NM_001402	1915	Hs.535192	NM_001402	HPRD:00559	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_15160	chr10	99894850	99895009	+	6.29814	NA	intron (NM_001256620, intron 1 of 8)	intron (NM_001256620, intron 1 of 8)	548	NM_138469	27291	Hs.419800	NM_014472	HPRD:12568	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1-like	protein-coding
19-PTNLD28-TUMOR_peak_94903	chr7	116139352	116139570	+	6.29814	NA	promoter-TSS (NM_001233)	promoter-TSS (NM_001233)	-194	NM_001206747	858	Hs.212332	NM_001233	HPRD:03029	CAV2	CAV	caveolin 2	protein-coding
19-PTNLD28-TUMOR_peak_5951	chr1	119930963	119931095	+	6.29814	NA	intron (NM_016527, intron 5 of 7)	intron (NM_016527, intron 5 of 7)	19460	NR_046780	100874270		NR_046780		HAO2-IT1	-	HAO2 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_71106	chr3	136679833	136679944	+	6.29814	NA	intron (NM_144717, intron 1 of 6)	intron (NM_144717, intron 1 of 6)	3181	NM_144717	53833	Hs.61232	NM_144717	HPRD:14594	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_87511	chr6	42522158	42522302	+	6.29814	NA	Intergenic	LTR12D|LTR|ERV1	-9530	NM_015255	23304	Hs.529925	NM_015255	HPRD:09853	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
19-PTNLD28-TUMOR_peak_75336	chr4	54633699	54634057	+	6.29814	NA	Intergenic	Intergenic	174755	NR_046827	100873955	Hs.351074	NR_046827		LNX1-AS2	-	LNX1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_80939	chr5	79968127	79968215	+	6.29814	NA	exon (NM_002439, exon 5 of 24)	exon (NM_002439, exon 5 of 24)	-17371	NR_110936	1719	Hs.592364	NM_000791	HPRD:00519	DHFR	DHFRP1|DYR	dihydrofolate reductase	protein-coding
19-PTNLD28-TUMOR_peak_25341	chr12	75283845	75283950	+	6.29814	NA	Intergenic	Intergenic	319631	NM_001260498	3747	Hs.27214	NM_139136	HPRD:08883	KCNC2	KV3.2	potassium voltage-gated channel, Shaw-related subfamily, member 2	protein-coding
19-PTNLD28-TUMOR_peak_36565	chr16	18221021	18221138	+	6.29814	NA	Intergenic	Intergenic	205440	NM_001282511	101059953	Hs.636569	NM_001282511		NPIPA8	LCR16a9	nuclear pore complex interacting protein family, member A8	protein-coding
19-PTNLD28-TUMOR_peak_77646	chr4	153621487	153621630	+	6.29814	NA	Intergenic	Intergenic	-20241	NM_152680	201799	Hs.518900	NM_152680		TMEM154	-	transmembrane protein 154	protein-coding
19-PTNLD28-TUMOR_peak_39674	chr17	2042196	2042346	+	6.29814	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-50216	NM_001282326	23293	Hs.448342	NM_017575	HPRD:06502	SMG6	C17orf31|EST1A|SMG-6|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_39078	chr16	84328149	84328322	+	6.29814	NA	promoter-TSS (NM_001282467)	promoter-TSS (NM_001282467)	-77	NM_021197	58189	Hs.36688	NM_021197	HPRD:05614	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
19-PTNLD28-TUMOR_peak_60346	chr20	26214344	26214544	+	6.29814	NA	Intergenic	L1PA2|LINE|L1	-24575	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_3640	chr1	54837486	54837575	+	6.29814	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	34538	NM_001009955	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_33286	chr15	42281845	42281933	+	6.29814	NA	intron (NM_001206670, intron 14 of 19)	intron (NM_001206670, intron 14 of 19)	16928	NR_120334	101928388	Hs.738043	NR_120334	ENSG00000246740	LOC101928388	-	uncharacterized LOC101928388	ncRNA
19-PTNLD28-TUMOR_peak_75311	chr4	53739492	53739658	+	6.29814	NA	3' UTR (NM_152540, exon 9 of 9)	3' UTR (NM_152540, exon 9 of 9)	11080	NM_023940	65997	Hs.8035	NM_023940	HPRD:15216	RASL11B	-	RAS-like, family 11, member B	protein-coding
19-PTNLD28-TUMOR_peak_32664	chr15	26371331	26371473	+	6.29814	NA	non-coding (NR_038851, exon 4 of 4)	non-coding (NR_038851, exon 4 of 4)	10442	NR_038852	503519	Hs.371380	NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
19-PTNLD28-TUMOR_peak_92815	chr7	62614626	62614801	+	6.29814	NA	Intergenic	L1HS|LINE|L1	149721	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_8287	chr1	173967019	173967141	+	6.29814	NA	Intergenic	Intergenic	-4870	NM_001300850	149041	Hs.30258	NM_172071	HPRD:13913	RC3H1	RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
19-PTNLD28-TUMOR_peak_51898	chr2	29547017	29547119	+	6.29814	NA	intron (NM_004304, intron 6 of 28)	intron (NM_004304, intron 6 of 28)	208776	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_38845	chr16	78525096	78525184	+	6.29814	NA	intron (NM_001291997, intron 7 of 7)	L2c|LINE|L2	391830	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_69110	chr3	74896324	74896478	+	6.29814	NA	Intergenic	Intergenic	-326058	NM_020872	5067	Hs.12723	NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3 (plasmacytoma associated)	protein-coding
19-PTNLD28-TUMOR_peak_91842	chr7	30499343	30499464	+	6.29814	NA	intron (NM_006092, intron 2 of 13)	MER113|DNA|hAT-Charlie	18990	NM_006092	10392	Hs.405153	NM_006092	HPRD:05815	NOD1	CARD4|CLR7.1|NLRC1	nucleotide-binding oligomerization domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_67692	chr3	41724573	41724664	+	6.29814	NA	intron (NM_017886, intron 27 of 36)	LTR35|LTR|ERV1	279042	NM_017886	54986	Hs.656192	NM_017886	HPRD:07928	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_88947	chr6	106440637	106440732	+	6.29814	NA	Intergenic	Intergenic	-93511	NM_001198	639	Hs.436023	NM_001198	HPRD:04572	PRDM1	BLIMP1|PRDI-BF1	PR domain containing 1, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_79697	chr5	42909133	42909326	+	6.29814	NA	Intergenic	MER1B|DNA|hAT-Charlie	84206	NR_104643	643977	Hs.535791	NR_104643		FLJ32255	-	uncharacterized LOC643977	ncRNA
19-PTNLD28-TUMOR_peak_68839	chr3	66130598	66130694	+	6.29814	NA	intron (NM_173471, intron 1 of 10)	intron (NM_173471, intron 1 of 10)	11361	NM_173471	115286	Hs.379386	NM_173471	HPRD:15357	SLC25A26	SAMC	solute carrier family 25 (S-adenosylmethionine carrier), member 26	protein-coding
19-PTNLD28-TUMOR_peak_15127	chr10	99473989	99474116	+	6.29589	NA	exon (NM_031484, exon 1 of 2)	exon (NM_031484, exon 1 of 2)	587	NM_031484	83742	Hs.744073	NM_031484	HPRD:14364	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52203	chr2	38402185	38402276	+	6.29547	NA	intron (NR_027252, intron 2 of 2)	intron (NR_027252, intron 2 of 2)	43983	NR_027252	285154	Hs.353894	NM_173652	HPRD:14592	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95534	chr7	134860749	134860870	+	6.29213	NA	Intergenic	HERV3-int|LTR|ERV1	-5231	NM_001243751	78996	Hs.732134	NM_024033	HPRD:08333	C7orf49	MRI	chromosome 7 open reading frame 49	protein-coding
19-PTNLD28-TUMOR_peak_73197	chr3	190232791	190232884	+	6.29164	NA	intron (NM_001167929, intron 1 of 10)	intron (NM_001167929, intron 1 of 10)	997	NM_001167931	3556	Hs.478673	NM_002182	HPRD:04021	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
19-PTNLD28-TUMOR_peak_37478	chr16	33312183	33312282	+	6.29107	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-13530	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30804	chr14	65231561	65231715	+	6.29024	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	20766	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_44009	chr17	79697985	79698155	+	6.28959	NA	Intergenic	AluJb|SINE|Alu	18804	NM_001270953	1468	Hs.548187	NM_012140	HPRD:08424	SLC25A10	DIC	solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_57132	chr2	177043766	177043854	+	6.28959	NA	promoter-TSS (NR_110458)	promoter-TSS (NR_110458)	916	NR_110457	102800310	Hs.599655	NR_110457		HAGLROS	-	HAGLR opposite strand (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_5707	chr1	115612383	115612507	+	6.28817	NA	intron (NM_005725, intron 2 of 7)	intron (NM_005725, intron 2 of 7)	19676	NM_005725	10100	Hs.310458	NM_005725	HPRD:18233	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
19-PTNLD28-TUMOR_peak_8232	chr1	172714247	172714335	+	6.28817	NA	Intergenic	Intergenic	86106	NM_000639	356	Hs.2007	NM_000639	HPRD:00610	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6	Fas ligand (TNF superfamily, member 6)	protein-coding
19-PTNLD28-TUMOR_peak_94506	chr7	102090810	102090944	+	6.28817	NA	3' UTR (NM_032831, exon 3 of 3)	3' UTR (NM_032831, exon 3 of 3)	14444	NM_017621	54784	Hs.658598	NM_017621	HPRD:07875	ALKBH4	ABH4	alkB, alkylation repair homolog 4 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_72566	chr3	178825943	178826112	+	6.28817	NA	intron (NR_125401, intron 2 of 2)	HAL1|LINE|L1	-36371	NM_022470	64393	Hs.371609	NM_022470	HPRD:07343	ZMAT3	PAG608|WIG-1|WIG1	zinc finger, matrin-type 3	protein-coding
19-PTNLD28-TUMOR_peak_96429	chr7	151506125	151506213	+	6.28817	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	5788	NM_001040633	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_58283	chr2	216974027	216974150	+	6.28817	NA	promoter-TSS (NM_021141)	promoter-TSS (NM_021141)	68	NM_021141	7520	Hs.388739	NM_021141	HPRD:08935	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)	protein-coding
19-PTNLD28-TUMOR_peak_37912	chr16	55357567	55357861	+	6.28817	NA	promoter-TSS (NM_024335)	promoter-TSS (NM_024335)	-757	NM_024335	79190	Hs.369907	NM_024335		IRX6	IRX-3|IRX7|IRXB3	iroquois homeobox 6	protein-coding
19-PTNLD28-TUMOR_peak_102809	chr9	34675193	34675326	+	6.28817	NA	Intergenic	Intergenic	-12570	NM_006664	10850	Hs.648124	NM_006664	HPRD:05321	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	chemokine (C-C motif) ligand 27	protein-coding
19-PTNLD28-TUMOR_peak_15912	chr10	120670887	120671040	+	6.28817	NA	Intergenic	L2c|LINE|L2	-118265	NM_199461	340719	Hs.591918	NM_199461	HPRD:16302	NANOS1	NOS1|SPGF12	nanos homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_3297	chr1	47755135	47755223	+	6.28817	NA	exon (NM_001048166, exon 9 of 17)	exon (NM_001048166, exon 9 of 17)	24640	NM_001282938	6491	Hs.525198	NM_003035	HPRD:01627	STIL	MCPH7|SIL	SCL/TAL1 interrupting locus	protein-coding
19-PTNLD28-TUMOR_peak_94915	chr7	116332799	116332965	+	6.28817	NA	intron (NM_001127500, intron 1 of 20)	intron (NM_001127500, intron 1 of 20)	20423	NM_001127500	4233	Hs.132966	NM_000245	HPRD:01280	MET	AUTS9|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_9386	chr1	203050586	203050760	+	6.28817	NA	Intergenic	Intergenic	4493	NM_002479	4656	Hs.2830	NM_002479	HPRD:01167	MYOG	MYF4|bHLHc3|myf-4	myogenin (myogenic factor 4)	protein-coding
19-PTNLD28-TUMOR_peak_18262	chr11	44638577	44638665	+	6.28817	NA	intron (NM_001024844, intron 6 of 8)	intron (NM_001024844, intron 6 of 8)	51480	NM_001024844	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_19690	chr11	69616332	69616460	+	6.28817	NA	Intergenic	Intergenic	17796	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_31878	chr14	95908791	95908883	+	6.28817	NA	intron (NM_152592, intron 10 of 16)	intron (NM_152592, intron 10 of 16)	-32410	NR_026779	79686	Hs.41502	NM_024633	HPRD:16606	LINC00341	C14orf139|NCRNA00341	long intergenic non-protein coding RNA 341	ncRNA
19-PTNLD28-TUMOR_peak_16350	chr10	134588764	134589093	+	6.28817	NA	intron (NM_005539, intron 12 of 15)	intron (NM_005539, intron 12 of 15)	10609	NM_177400	84504	Hs.134013	NM_177400	HPRD:09336	NKX6-2	GTX|NKX6.2|NKX6B	NK6 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_36959	chr16	27190976	27191103	+	6.28817	NA	Intergenic	L2b|LINE|L2	-23768	NM_024773	79831	Hs.145717	NM_024773	HPRD:07836	KDM8	JMJD5	lysine (K)-specific demethylase 8	protein-coding
19-PTNLD28-TUMOR_peak_58955	chr2	235198585	235198675	+	6.28817	NA	Intergenic	Intergenic	207063	NM_005737	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_95649	chr7	137402618	137402808	+	6.28817	NA	intron (NM_004717, intron 1 of 33)	intron (NM_004717, intron 1 of 33)	128896	NM_004717	9162	Hs.242947	NM_004717	HPRD:07238	DGKI	DGK-IOTA	diacylglycerol kinase, iota	protein-coding
19-PTNLD28-TUMOR_peak_108439	chrX	55515066	55515530	+	6.28817	NA	exon (NM_201286, exon 2 of 2)	exon (NM_201286, exon 2 of 2)	333	NM_201286	158880	Hs.40061	NM_201286	HPRD:07167	USP51	-	ubiquitin specific peptidase 51	protein-coding
19-PTNLD28-TUMOR_peak_92254	chr7	44112091	44112190	+	6.28795	NA	TTS (NR_106897)	TTS (NR_106897)	892	NR_106897	102465504		NR_106897		MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
19-PTNLD28-TUMOR_peak_78375	chr4	186629625	186629713	+	6.28795	NA	intron (NM_001145672, intron 1 of 20)	intron (NM_001145672, intron 1 of 20)	-51546	NM_001145674	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_84084	chr5	173173163	173173288	+	6.28795	NA	promoter-TSS (NR_108027)	promoter-TSS (NR_108027)	-13	NR_108027	101928136	Hs.449267	NR_108027		LINC01484	-	long intergenic non-protein coding RNA 1484	ncRNA
19-PTNLD28-TUMOR_peak_45754	chr18	48253341	48253468	+	6.28795	NA	intron (NM_001292039, intron 4 of 4)	MER117|DNA|hAT-Charlie	93030	NM_001127176	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_27432	chr13	22687595	22687683	+	6.28795	NA	Intergenic	Intergenic	-96785	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_57735	chr2	201221944	201222087	+	6.28795	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	48342	NM_001282744	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_21245	chr11	113425385	113425490	+	6.28795	NA	Intergenic	LTR9|LTR|ERV1	-79436	NM_000795	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_95242	chr7	129626549	129626703	+	6.28795	NA	Intergenic	AluJo|SINE|Alu	-33826	NM_003344	7328	Hs.643548	NM_003344	HPRD:03052	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
19-PTNLD28-TUMOR_peak_109018	chrX	102884522	102884657	+	6.28795	NA	intron (NM_004780, intron 2 of 2)	CpG	697	NM_001006639	9338	Hs.95243	NM_004780	HPRD:02211	TCEAL1	SIIR|WEX9|p21|pp21	transcription elongation factor A (SII)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_103620	chr9	70366858	70366975	+	6.28795	NA	intron (NR_121570, intron 3 of 4).4	intron (NR_121570, intron 3 of 4).4	8008	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_65604	chr22	40102796	40102918	+	6.28795	NA	Intergenic	Intergenic	136099	NM_001003406	8911	Hs.125116	NM_021096	HPRD:10500	CACNA1I	Cav3.3|ca(v)3.3	calcium channel, voltage-dependent, T type, alpha 1I subunit	protein-coding
19-PTNLD28-TUMOR_peak_106628	chr9	137000451	137000554	+	6.28453	NA	promoter-TSS (NM_017588)	promoter-TSS (NM_017588)	-708	NM_017588	11091	Hs.397638	NM_017588	HPRD:10614	WDR5	BIG-3|SWD3	WD repeat domain 5	protein-coding
19-PTNLD28-TUMOR_peak_48058	chr19	18496917	18497071	+	6.28453	NA	promoter-TSS (NR_036156)	promoter-TSS (NR_036156)	26	NM_004864	9518	Hs.616962	NM_004864	HPRD:05608	GDF15	GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
19-PTNLD28-TUMOR_peak_84424	chr5	178017779	178017873	+	6.28453	NA	promoter-TSS (NM_173465)	promoter-TSS (NM_173465)	-270	NM_173465	91522	Hs.660026	NM_173465	HPRD:16733	COL23A1	-	collagen, type XXIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_18422	chr11	46847885	46848022	+	6.28453	NA	intron (NM_001008938, intron 1 of 43)	intron (NM_001008938, intron 1 of 43)	19906	NM_014756	9793	Hs.201253	NM_014756	HPRD:10830	CKAP5	CHTOG|MSPS|TOG|TOGp|ch-TOG	cytoskeleton associated protein 5	protein-coding
19-PTNLD28-TUMOR_peak_71024	chr3	134753859	134753988	+	6.28453	NA	intron (NM_004441, intron 3 of 15)	intron (NM_004441, intron 3 of 15)	239824	NM_004441	2047	Hs.116092	NM_004441	HPRD:02790	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
19-PTNLD28-TUMOR_peak_39145	chr16	85116226	85116369	+	6.28453	NA	intron (NM_014732, intron 10 of 12)	intron (NM_014732, intron 10 of 12)	19479	NM_001286565	9764	Hs.301658	NM_014732	HPRD:17192	KIAA0513	-	KIAA0513	protein-coding
19-PTNLD28-TUMOR_peak_37324	chr16	31141157	31141256	+	6.28409	NA	intron (NM_182958, intron 6 of 9)	intron (NM_182958, intron 6 of 9)	5945	NM_002773	5652	Hs.75799	NM_002773	HPRD:02895	PRSS8	CAP1|PROSTASIN	protease, serine, 8	protein-coding
19-PTNLD28-TUMOR_peak_48158	chr19	19601044	19601138	+	6.28276	NA	intron (NM_001300946, intron 1 of 10)	intron (NM_001300946, intron 1 of 10)	24942	NM_001300946	54815	Hs.118964	NM_017660	HPRD:11741	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_88164	chr6	58262051	58262178	+	6.28276	NA	intron (NR_003660, intron 3 of 6)	THE1B-int|LTR|ERVL-MaLR	25610	NR_125729	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2	glucuronidase, beta pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_62378	chr20	57463809	57463979	+	6.28014	NA	promoter-TSS (NR_003259)	promoter-TSS (NR_003259)	-286	NR_003259	2778	Hs.125898	NM_000516	HPRD:00761	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH	GNAS complex locus	protein-coding
19-PTNLD28-TUMOR_peak_104676	chr9	96846673	96846870	+	6.27912	NA	promoter-TSS (NM_001253829)	promoter-TSS (NM_001253829)	60	NM_001253829	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58111	chr2	209118938	209119036	+	6.27912	NA	promoter-TSS (NR_046452)	promoter-TSS (NR_046452)	40	NM_001282387	3417	Hs.593422	NM_005896	HPRD:00984	IDH1	HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding
19-PTNLD28-TUMOR_peak_1490	chr1	24128005	24128093	+	6.27912	NA	promoter-TSS (NM_001008216)	promoter-TSS (NM_001008216)	-755	NM_001008216	2582	Hs.632380	NM_000403	HPRD:06092	GALE	SDR1E1	UDP-galactose-4-epimerase	protein-coding
19-PTNLD28-TUMOR_peak_76575	chr4	110623732	110624034	+	6.27912	NA	intron (NM_001226, intron 1 of 6)	intron (NM_001226, intron 1 of 6)	746	NM_001226	839	Hs.654616	NM_001226	HPRD:03321	CASP6	MCH2	caspase 6, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_61739	chr20	48595662	48595910	+	6.27912	NA	Intergenic	Intergenic	-3727	NM_005985	6615	Hs.48029	NM_005985	HPRD:05025	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_15104	chr10	99257538	99257660	+	6.27744	NA	intron (NM_001289405, intron 2 of 31)	intron (NM_001289405, intron 2 of 31)	767	NM_001289403	64210	Hs.500721	NM_022362	HPRD:17579	MMS19	MET18|MMS19L|hMMS19	MMS19 nucleotide excision repair homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_73527	chr3	195635172	195635487	+	6.27744	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	551	NM_005781	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_78891	chr5	10460718	10460940	+	6.27162	NA	intron (NM_031916, intron 3 of 4)	intron (NM_031916, intron 3 of 4)	-17320	NR_106747	102465138		NR_106747		MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
19-PTNLD28-TUMOR_peak_3126	chr1	45266563	45266698	+	6.27158	NA	intron (NM_004073, intron 2 of 14)	CpG-1035	594	NM_004073	1263	Hs.632415	NM_004073	HPRD:04222	PLK3	CNK|FNK|PRK	polo-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_36796	chr16	22523778	22523942	+	6.27158	NA	promoter-TSS (NM_001135865)	promoter-TSS (NM_001135865)	-984	NM_001135865	100132247	Hs.611072	NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family, member B5	protein-coding
19-PTNLD28-TUMOR_peak_46080	chr18	60189531	60189622	+	6.27115	NA	Intergenic	CpG	-1082	NM_017742	54877	Hs.114191	NM_017742	HPRD:11696	ZCCHC2	C18orf49	zinc finger, CCHC domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_18419	chr11	46714184	46714304	+	6.26583	NA	intron (NM_004308, intron 3 of 12)	intron (NM_004308, intron 3 of 12)	7971	NM_004308	392	Hs.138860	NM_004308	HPRD:04108	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42478	chr17	55444384	55444800	+	6.26583	NA	intron (NM_138962, intron 5 of 13)	intron (NM_138962, intron 5 of 13)	110218	NM_170721	124540	Hs.658922	NM_138962	HPRD:07438	MSI2	MSI2H	musashi RNA-binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_20199	chr11	77184578	77184761	+	6.26583	NA	5' UTR (NM_001128620, exon 1 of 16)	5' UTR (NM_001128620, exon 1 of 16)	439	NM_002576	5058	Hs.435714	NM_002576	HPRD:03995	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_23184	chr12	13557655	13557816	+	6.26583	NA	Intergenic	Intergenic	-28056	NR_036555	283422	Hs.448717	NM_182558	HPRD:08166	C12orf36	-	chromosome 12 open reading frame 36	ncRNA
19-PTNLD28-TUMOR_peak_15853	chr10	118976975	118977096	+	6.26583	NA	Intergenic	Intergenic	20035	NM_181840	338567	Hs.449650	NM_181840	HPRD:17173	KCNK18	K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK	potassium channel, subfamily K, member 18	protein-coding
19-PTNLD28-TUMOR_peak_34029	chr15	65822654	65822915	+	6.26583	NA	promoter-TSS (NM_016395)	promoter-TSS (NM_016395)	-43	NM_016395	51495	Hs.512973	NM_016395	HPRD:11037	PTPLAD1	B-IND1|BIND1|HACD3|HSPC121	protein tyrosine phosphatase-like A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_45294	chr18	35154194	35154376	+	6.26583	NA	Intergenic	Intergenic	-8285	NM_020180	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_43973	chr17	79480780	79480970	+	6.26537	NA	promoter-TSS (NM_001614)	promoter-TSS (NM_001614)	-983	NM_001199954	71	Hs.514581	NM_001614	HPRD:00017	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_100816	chr8	128750010	128750146	+	6.26305	NA	intron (NM_002467, intron 1 of 2)	CpG	1763	NM_002467	4609	Hs.202453	NM_002467	HPRD:01818	MYC	MRTL|MYCC|bHLHe39|c-Myc	v-myc avian myelocytomatosis viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_48070	chr19	18543945	18544081	+	6.26305	NA	exon (NM_032627, exon 15 of 18)	exon (NM_032627, exon 15 of 18)	4106	NM_001253389	51477	Hs.405873	NM_016368	HPRD:17163	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_4631	chr1	86042632	86042820	+	6.26126	NA	intron (NM_001134445, intron 1 of 6)	CpG	1320	NM_001134445	23576	Hs.713411	NM_012137	HPRD:09203	DDAH1	DDAH|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_26246	chr12	110481085	110481216	+	6.25922	NA	intron (NM_207435, intron 4 of 4)	L2a|LINE|L2	24350	NM_207435	400073	Hs.44817	NM_207435	HPRD:13443	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
19-PTNLD28-TUMOR_peak_32513	chr15	22094402	22094597	+	6.25922	NA	Intergenic	CpG	-11358	NM_207355	102724631	Hs.722659	NM_207355		LOC102724631	POTE-15|POTEB	POTE ankyrin domain family, member B-like	protein-coding
19-PTNLD28-TUMOR_peak_101537	chr8	143553391	143553509	+	6.25922	NA	intron (NM_001702, intron 1 of 29)	intron (NM_001702, intron 1 of 29)	8073	NM_001702	575	Hs.194654	NM_001702	HPRD:04062	BAI1	GDAIF	brain-specific angiogenesis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_62206	chr20	55356190	55356356	+	6.25922	NA	Intergenic	Intergenic	151915	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_33779	chr15	59587657	59587898	+	6.25922	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	77294	NM_004998	4643	Hs.654506	NM_004998	HPRD:03281	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
19-PTNLD28-TUMOR_peak_50213	chr19	53971219	53971312	+	6.25913	NA	intron (NM_001004301, intron 1 of 3)	CpG	276	NM_001004301	126017	Hs.710780	NM_001004301		ZNF813	-	zinc finger protein 813	protein-coding
19-PTNLD28-TUMOR_peak_22131	chr11	129732176	129732300	+	6.25913	NA	Intergenic	Intergenic	30666	NM_006165	4798	Hs.530539	NM_006165	HPRD:01240	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
19-PTNLD28-TUMOR_peak_78098	chr4	175443518	175443815	+	6.25913	NA	5' UTR (NM_000860, exon 1 of 7)	5' UTR (NM_000860, exon 1 of 7)	378	NM_001256301	3248	Hs.596913	NM_000860	HPRD:03406	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	hydroxyprostaglandin dehydrogenase 15-(NAD)	protein-coding
19-PTNLD28-TUMOR_peak_13621	chr10	52499461	52499674	+	6.25913	NA	promoter-TSS (NM_001079516)	promoter-TSS (NM_001079516)	-121	NM_001079516	653308	Hs.710005	NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3	N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B	protein-coding
19-PTNLD28-TUMOR_peak_33202	chr15	41055448	41055564	+	6.25913	NA	promoter-TSS (NM_005258)	promoter-TSS (NM_005258)	-779	NM_005258	2644	Hs.631717	NM_005258	HPRD:03895	GCHFR	GFRP|HsT16933|P35	GTP cyclohydrolase I feedback regulator	protein-coding
19-PTNLD28-TUMOR_peak_59537	chr20	3154206	3154371	+	6.25913	NA	promoter-TSS (NM_001282533)	promoter-TSS (NM_001282533)	-50	NM_001282533	9762	Hs.90232	NM_014731	HPRD:11461	LZTS3	PROSAPIP1	leucine zipper, putative tumor suppressor family member 3	protein-coding
19-PTNLD28-TUMOR_peak_763	chr1	11539139	11539237	+	6.25913	NA	promoter-TSS (NM_020780)	promoter-TSS (NM_020780)	-107	NM_020780	57540	Hs.202355	NM_020780	ENSG00000204624	PTCHD2	DISP3	patched domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_37764	chr16	50489866	50489971	+	6.25913	NA	Intergenic	Intergenic	-87073	NM_001173984	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_29911	chr14	35837882	35837988	+	6.25913	NA	Intergenic	Intergenic	36025	NM_020529	4792	Hs.81328	NM_020529	HPRD:01235	NFKBIA	IKBA|MAD-3|NFKBI	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_13838	chr10	63597035	63597194	+	6.25913	NA	Intergenic	Intergenic	-63899	NM_032199	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT rich interactive domain 5B (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_16747	chr11	3477035	3477133	+	6.25913	NA	Intergenic	HERVK-int|LTR|ERVK	-63939	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_19855	chr11	71906852	71907006	+	6.25913	NA	intron (NM_016724, intron 5 of 5)	intron (NM_016724, intron 5 of 5)	3756	NM_016729	2348	Hs.73769	NM_000802	HPRD:00638	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
19-PTNLD28-TUMOR_peak_44715	chr18	13438266	13438407	+	6.25889	NA	exon (NM_181481, exon 3 of 6)	exon (NM_181481, exon 3 of 6)	-10803	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52955	chr2	61293306	61293486	+	6.25889	NA	promoter-TSS (NM_032506)	promoter-TSS (NM_032506)	33	NM_032506	84542	Hs.468653	NM_032506	HPRD:13896	KIAA1841	-	KIAA1841	protein-coding
19-PTNLD28-TUMOR_peak_41682	chr17	42174928	42175113	+	6.25889	NA	intron (NM_001015053, intron 3 of 26)	intron (NM_001015053, intron 3 of 26)	25994	NM_001015053	10014	Hs.438782	NM_005474	HPRD:09246	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
19-PTNLD28-TUMOR_peak_13968	chr10	69853878	69853966	+	6.25889	NA	Intergenic	MER41B|LTR|ERV1	-11952	NM_001256267	84665	Hs.55205	NM_032578	HPRD:10536	MYPN	CMD1DD|CMH22|MYOP|RCM4	myopalladin	protein-coding
19-PTNLD28-TUMOR_peak_53382	chr2	70995147	70995420	+	6.25889	NA	promoter-TSS (NM_001185055)	promoter-TSS (NM_001185055)	92	NM_017482	119	Hs.188528	NM_001617	HPRD:00037	ADD2	ADDB	adducin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_91801	chr7	29602555	29602787	+	6.25889	NA	promoter-TSS (NM_175887)	promoter-TSS (NM_175887)	-756	NM_175887	222171	Hs.91109	NM_175887	HPRD:14136	PRR15	-	proline rich 15	protein-coding
19-PTNLD28-TUMOR_peak_12660	chr10	29872705	29872846	+	6.25806	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	18500	NR_030634	100126327		NR_030634	miRBase:MI0005760	MIR938	MIRN938|hsa-mir-938	microRNA 938	ncRNA
19-PTNLD28-TUMOR_peak_102389	chr9	19498147	19498279	+	6.25799	NA	Intergenic	MIRb|SINE|MIR	89288	NM_001010887	340485	Hs.41379	NM_001010887		ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
19-PTNLD28-TUMOR_peak_43445	chr17	73584301	73584436	+	6.25799	NA	non-coding (NR_003587, exon 1 of 61)	non-coding (NR_003587, exon 1 of 61)	229	NR_003587	80022	Hs.390817	NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66235	chr3	4533919	4534101	+	6.25799	NA	intron (NR_108075, intron 1 of 1)	intron (NR_108075, intron 1 of 1)	837	NR_108075	100996539	Hs.190365	NR_108075		ITPR1-AS1	-	ITPR1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_102558	chr9	27385351	27385465	+	6.25799	NA	intron (NM_024761, intron 2 of 3)	intron (NM_024761, intron 2 of 3)	-88271	NM_001161585	54586	Hs.163070	NM_020641	HPRD:12932	EQTN	AFAF|C9orf11|SPACA8|equatorin	equatorin, sperm acrosome associated	protein-coding
19-PTNLD28-TUMOR_peak_103980	chr9	79520748	79520852	+	6.25799	NA	intron (NM_015225, intron 1 of 18)	intron (NM_015225, intron 1 of 18)	203	NM_015225	158471	Hs.262857	NM_015225	HPRD:12970	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_15124	chr10	99449473	99449710	+	6.25799	NA	Intergenic	Intergenic	-2576	NM_021732	60370	Hs.23918	NM_021732	HPRD:16530	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin-induced 1	protein-coding
19-PTNLD28-TUMOR_peak_41955	chr17	45548329	45548559	+	6.25454	NA	intron (NR_033934, intron 4 of 5)	LTR38B|LTR|ERV1	21542	NR_033934	653479	Hs.537279	NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_46100	chr18	60730453	60730541	+	6.25454	NA	Intergenic	MER5A|DNA|hAT-Charlie	256116	NM_000633	596	Hs.150749	NM_000633	HPRD:01045	BCL2	Bcl-2|PPP1R50	B-cell CLL/lymphoma 2	protein-coding
19-PTNLD28-TUMOR_peak_68629	chr3	58828010	58828140	+	6.25454	NA	intron (NM_198463, intron 12 of 15)	L1PA2|LINE|L1	17878	NR_110820	101929238	Hs.683953	NR_110820	ENSG00000242428	C3orf67-AS1	-	C3orf67 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_68788	chr3	64504753	64504925	+	6.25454	NA	intron (NM_182920, intron 39 of 39)	MIRb|SINE|MIR	-42183	NR_110151	101929335	Hs.476604	NR_110150		ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_77860	chr4	159933680	159933780	+	6.25454	NA	intron (NM_152543, intron 1 of 4)	intron (NM_152543, intron 1 of 4)	22603	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_6704	chr1	150622811	150622958	+	6.25454	NA	intron (NM_018178, intron 4 of 4)	L1MB4|LINE|L1	-20786	NM_207042	2029	Hs.632456	NM_004436	HPRD:11927	ENSA	ARPP-19e	endosulfine alpha	protein-coding
19-PTNLD28-TUMOR_peak_27283	chr12	133022608	133022900	+	6.25454	NA	Intergenic	CpG	-44403	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_82717	chr5	140819102	140819190	+	6.25454	NA	intron (NM_003735, intron 1 of 3)	intron (NM_003735, intron 1 of 3)	8988	NM_003735	26025	Hs.368160	NM_003735	HPRD:07538	PCDHGA12	CDH21|FIB3|PCDH-GAMMA-A12	protocadherin gamma subfamily A, 12	protein-coding
19-PTNLD28-TUMOR_peak_16895	chr11	6947515	6947817	+	6.25454	NA	promoter-TSS (NM_013250)	promoter-TSS (NM_013250)	12	NM_013250	7762	Hs.523457	NM_013250	HPRD:05425	ZNF215	BAZ-2|BAZ2|ZKSCAN11|ZSCAN43	zinc finger protein 215	protein-coding
19-PTNLD28-TUMOR_peak_56673	chr2	162480772	162481085	+	6.25454	NA	promoter-TSS (NM_022058)	promoter-TSS (NM_022058)	83	NM_022058	57282	Hs.333958	NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4, sodium bicarbonate transporter, member 10	protein-coding
19-PTNLD28-TUMOR_peak_73286	chr3	192682896	192683018	+	6.25454	NA	Intergenic	L1PA3|LINE|L1	-47007	NM_178496	151963	Hs.151443	NM_178496	HPRD:14092	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_38291	chr16	67149629	67149780	+	6.25454	NA	intron (NM_025187, intron 1 of 15)	intron (NM_025187, intron 1 of 15)	5789	NM_025187	80262	Hs.513666	NM_025187	HPRD:17460	C16orf70	C16orf6|LIN10|lin-10	chromosome 16 open reading frame 70	protein-coding
19-PTNLD28-TUMOR_peak_22442	chr12	1761233	1761413	+	6.25454	NA	Intergenic	Intergenic	8223	NR_037422	100500816		NR_037422	miRBase:MI0016049	MIR3649	-	microRNA 3649	ncRNA
19-PTNLD28-TUMOR_peak_36361	chr16	12564287	12564479	+	6.25454	NA	intron (NM_032167, intron 18 of 20)	intron (NM_032167, intron 18 of 20)	-249795	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_33257	chr15	41878070	41878198	+	6.25454	NA	Intergenic	Intergenic	26914	NM_006293	7301	Hs.381282	NM_006293	HPRD:02641	TYRO3	BYK|Dtk|RSE|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_79037	chr5	14727593	14727685	+	6.25454	NA	intron (NM_054027, intron 8 of 11)	intron (NM_054027, intron 8 of 11)	14836	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
19-PTNLD28-TUMOR_peak_64971	chr22	29314166	29314360	+	6.25454	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	886	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_109861	chrX	152647670	152647974	+	6.25454	NA	Intergenic	Intergenic	-35959	NM_001136273	139735	Hs.534554	NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_23915	chr12	45764916	45765167	+	6.25454	NA	intron (NM_001142678, intron 9 of 19)	L1PA3|LINE|L1	78575	NM_001142678	196527	Hs.505339	NM_001025356	HPRD:18746	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
19-PTNLD28-TUMOR_peak_95454	chr7	132950755	132950897	+	6.25454	NA	intron (NM_021807, intron 1 of 17)	MLT1B|LTR|ERVL-MaLR	13003	NM_021807	60412	Hs.321273	NM_021807	HPRD:12185	EXOC4	SEC8|SEC8L1|Sec8p	exocyst complex component 4	protein-coding
19-PTNLD28-TUMOR_peak_30572	chr14	59522306	59522457	+	6.25454	NA	Intergenic	Intergenic	-133000	NM_001270520	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_91753	chr7	28109553	28109703	+	6.25454	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-110448	NR_034097	100128081	Hs.434307	NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_10551	chr1	227413462	227413649	+	6.25454	NA	intron (NM_014826, intron 2 of 34)	intron (NM_014826, intron 2 of 34)	92271	NM_014826	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_93361	chr7	74511339	74511463	+	6.25237	NA	intron (NM_001003795, intron 1 of 15)	AluJr|SINE|Alu	3054	NM_173537	84163	Hs.647017	NM_173537	HPRD:16402	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_63607	chr21	41405091	41405351	+	6.25131	NA	intron (NR_073202, intron 32 of 32)	L1PA2|LINE|L1	165874	NM_006198	5121	Hs.80296	NM_006198	HPRD:03378	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
19-PTNLD28-TUMOR_peak_1940	chr1	30179984	30180095	+	6.25131	NA	Intergenic	Intergenic	330420	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_64834	chr22	25632358	25632474	+	6.25131	NA	Intergenic	MIR|SINE|MIR	16804	NM_000496	1415	Hs.373074	NM_000496	HPRD:00430	CRYBB2	CCA2|CRYB2|CRYB2A|CTRCT3|D22S665	crystallin, beta B2	protein-coding
19-PTNLD28-TUMOR_peak_12318	chr10	21644553	21644690	+	6.25131	NA	Intergenic	L2|LINE|L2	140949	NR_031736	100302129		NR_031736		MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
19-PTNLD28-TUMOR_peak_79267	chr5	27218016	27218129	+	6.25131	NA	Intergenic	LTR1|LTR|ERV1	-179383	NM_016279	1007	Hs.272212	NM_016279	HPRD:13021	CDH9	-	cadherin 9, type 2 (T1-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_58702	chr2	228267813	228267934	+	6.25131	NA	Intergenic	L2b|LINE|L2	-23851	NM_024795	79853	Hs.156652	NM_024795	HPRD:08008	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
19-PTNLD28-TUMOR_peak_72145	chr3	163720762	163720951	+	6.25131	NA	Intergenic	LTR12C|LTR|ERV1	-699767	NR_033945	647107	Hs.408584	NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
19-PTNLD28-TUMOR_peak_108659	chrX	69699233	69699362	+	6.25131	NA	intron (NM_020730, intron 4 of 13)	intron (NM_020730, intron 4 of 13)	-23453	NR_109801	100873930	Hs.571699	NR_046586		DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70316	chr3	124295565	124295663	+	6.25131	NA	intron (NM_001024660, intron 34 of 59)	intron (NM_001024660, intron 34 of 59)	-7892	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_5312	chr1	108974673	108974816	+	6.25131	NA	Intergenic	L1PA10|LINE|L1	-18160	NM_001143988	653149	Hs.712226	NM_001143987	ENSG00000186086	NBPF6	-	neuroblastoma breakpoint family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_70108	chr3	121033163	121033345	+	6.25131	NA	intron (NM_014980, intron 20 of 27)	SVA_E|Other|Other	231599	NM_199420	10721	Hs.241517	NM_199420	HPRD:10375	POLQ	POLH|PRO0327	polymerase (DNA directed), theta	protein-coding
19-PTNLD28-TUMOR_peak_57576	chr2	196093006	196093175	+	6.25131	NA	Intergenic	L1P1|LINE|L1	-428442	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_84979	chr6	4369948	4370050	+	6.25131	NA	Intergenic	Intergenic	233693	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_27006	chr12	125223491	125223645	+	6.25131	NA	Intergenic	CpG	124951	NM_005505	949	Hs.731377	NM_005505	HPRD:03024	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_67750	chr3	42947566	42947685	+	6.25131	NA	promoter-TSS (NM_001134656)	promoter-TSS (NM_001134656)	-33	NM_001134656	389114	Hs.720173	NM_207404	HPRD:13516	ZNF662	-	zinc finger protein 662	protein-coding
19-PTNLD28-TUMOR_peak_32973	chr15	33526281	33526392	+	6.25131	NA	Intergenic	Intergenic	13420	NR_046005	100652857	Hs.439998	NR_046005		TMCO5B	-	transmembrane and coiled-coil domains 5B, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_106429	chr9	132971508	132971596	+	6.25131	NA	intron (NM_014286, intron 2 of 7)	intron (NM_014286, intron 2 of 7)	8680	NM_001128826	23413	Hs.642946	NM_014286	HPRD:04500	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
19-PTNLD28-TUMOR_peak_19177	chr11	64544998	64545151	+	6.24880	NA	5' UTR (NM_001178031, exon 1 of 13)	5' UTR (NM_001178031, exon 1 of 13)	158	NM_001178031	7536	Hs.502829	NM_004630	HPRD:03306	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
19-PTNLD28-TUMOR_peak_17847	chr11	32443631	32443769	+	6.24594	NA	intron (NM_001198552, intron 3 of 8)	intron (NM_001198552, intron 3 of 8)	8663	NM_001198552	7490	Hs.591980	NM_000378	HPRD:06163	WT1	AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33	Wilms tumor 1	protein-coding
19-PTNLD28-TUMOR_peak_5305	chr1	108743513	108743631	+	6.24134	NA	promoter-TSS (NM_013386)	promoter-TSS (NM_013386)	-592	NM_013386	29957	Hs.656870	NM_013386	HPRD:12290	SLC25A24	APC1|SCAMC-1	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	protein-coding
19-PTNLD28-TUMOR_peak_79491	chr5	36241350	36241646	+	6.24134	NA	promoter-TSS (NM_001287340)	promoter-TSS (NM_001287340)	-5	NM_001287340	133686	Hs.81907	NM_153013	HPRD:08088	NADK2	C5orf33|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_71071	chr3	135969938	135970090	+	6.24134	NA	intron (NM_000532, intron 1 of 14)	intron (NM_000532, intron 1 of 14)	847	NM_001178014	5096	Hs.63788	NM_000532	HPRD:01982	PCCB	-	propionyl CoA carboxylase, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_85595	chr6	15501661	15501778	+	6.24134	NA	intron (NM_001267040, intron 8 of 17)	intron (NM_001267040, intron 8 of 17)	161570	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_7172	chr1	155146668	155146763	+	6.23727	NA	promoter-TSS (NM_173852)	promoter-TSS (NM_173852)	452	NM_001282378	80128	Hs.287735	NM_025058	HPRD:15563	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
19-PTNLD28-TUMOR_peak_103177	chr9	41556106	41556242	+	6.23685	NA	Intergenic	Intergenic	40120	NR_110999	653123		NR_110999		FAM74A6	-	family with sequence similarity 74, member A6	ncRNA
19-PTNLD28-TUMOR_peak_92935	chr7	66055815	66055961	+	6.23685	NA	intron (NR_111977, intron 1 of 5)	intron (NR_111977, intron 1 of 5)	1506	NR_111972	493754	Hs.732409	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_106278	chr9	131219081	131219169	+	6.23685	NA	promoter-TSS (NM_153437)	promoter-TSS (NM_153437)	-61	NM_153437	4957	Hs.129055	NM_002540	HPRD:03601	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
19-PTNLD28-TUMOR_peak_34760	chr15	80324329	80324421	+	6.23653	NA	Intergenic	Intergenic	-27535	NM_001242917	54469	Hs.596679	NM_019006	HPRD:18314	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger, AN1-type domain 6	protein-coding
19-PTNLD28-TUMOR_peak_45330	chr18	37379625	37379865	+	6.23391	NA	Intergenic	AluY|SINE|Alu	-47786	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	ncRNA
19-PTNLD28-TUMOR_peak_33329	chr15	43606475	43606602	+	6.23391	NA	Intergenic	L1MB5|LINE|L1	-12085	NM_052955	116179	Hs.164661	NM_052955	HPRD:09485	TGM7	TGMZ	transglutaminase 7	protein-coding
19-PTNLD28-TUMOR_peak_20622	chr11	94064119	94064232	+	6.23391	NA	Intergenic	Intergenic	25372	NM_001199206	390243	Hs.553758	NM_001080486	ENSG00000183560	FOLR4	Folbp3|JUNO	folate receptor 4, delta (putative)	protein-coding
19-PTNLD28-TUMOR_peak_83398	chr5	154117399	154117616	+	6.23391	NA	intron (NM_015315, intron 1 of 18)	intron (NM_015315, intron 1 of 18)	25045	NM_015315	23367	Hs.292078	NM_015315	HPRD:11225	LARP1	LARP	La ribonucleoprotein domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_18239	chr11	44337722	44337860	+	6.23391	NA	Intergenic	CpG	-6075	NM_021926	60529	Hs.436055	NM_021926	HPRD:05661	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_39160	chr16	85261744	85261832	+	6.23391	NA	Intergenic	L2b|LINE|L2	-54776	NR_038859	197196	Hs.679002	NM_153238		LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
19-PTNLD28-TUMOR_peak_66843	chr3	14629423	14629523	+	6.23391	NA	Intergenic	Intergenic	-47623	NM_001080423	80852	Hs.517819	NM_001080423		GRIP2	-	glutamate receptor interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_15672	chr10	114056119	114056295	+	6.23391	NA	intron (NM_058222, intron 6 of 9)	intron (NM_058222, intron 6 of 9)	-3163	NR_106771	102466189		NR_106771		MIR6715A	hsa-mir-6715a	microRNA 6715a	ncRNA
19-PTNLD28-TUMOR_peak_51434	chr2	20271429	20271567	+	6.23391	NA	Intergenic	Intergenic	-19709	NM_014713	9741	Hs.467807	NM_014713	HPRD:13959	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
19-PTNLD28-TUMOR_peak_1349	chr1	21996233	21996508	+	6.23391	NA	promoter-TSS (NM_001145657)	promoter-TSS (NM_001145657)	-514	NM_001145657	5909	Hs.148178	NM_002885	HPRD:02609	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_24623	chr12	56111430	56111519	+	6.23335	NA	intron (NR_037658, intron 2 of 5)	intron (NR_037658, intron 2 of 5)	1398	NR_037656	2647	Hs.94672	NM_001487	HPRD:03263	BLOC1S1	BLOS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_90913	chr7	2443625	2443932	+	6.23311	NA	intron (NM_018641, intron 1 of 1)	CpG	583	NM_001243794	55501	Hs.744987	NM_018641	HPRD:13056	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate (chondroitin 4) sulfotransferase 12	protein-coding
19-PTNLD28-TUMOR_peak_2878	chr1	42242610	42242827	+	6.23311	NA	intron (NM_024503, intron 1 of 8)	MIRc|SINE|MIR	141660	NM_024503	59269	Hs.403972	NM_024503	HPRD:09442	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_77085	chr4	132648656	132648975	+	6.23311	NA	Intergenic	SST1|Satellite|centr	-1421655	NM_032961	57575	Hs.192859	NM_020815		PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding
19-PTNLD28-TUMOR_peak_100234	chr8	118124454	118124777	+	6.23121	NA	intron (NM_001172815, intron 2 of 10)	intron (NM_001172815, intron 2 of 10)	-22722	NM_173851	169026	Hs.532270	NM_173851	HPRD:15370	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 (zinc transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_17020	chr11	9023470	9023559	+	6.23121	NA	intron (NM_020645, intron 1 of 6)	intron (NM_020645, intron 1 of 6)	2082	NM_020645	56675	Hs.523467	NM_020645	HPRD:14840	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_1248	chr1	20126666	20127004	+	6.23121	NA	promoter-TSS (NM_181719)	promoter-TSS (NM_181719)	-425	NM_181719	255104	Hs.656313	NM_181719	HPRD:14140	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_49695	chr19	48902012	48902148	+	6.23121	NA	exon (NM_000836, exon 2 of 13)	exon (NM_000836, exon 2 of 13)	3948	NM_000836	2906	Hs.445015	NM_000836	HPRD:04095	GRIN2D	EB11|GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, N-methyl D-aspartate 2D	protein-coding
19-PTNLD28-TUMOR_peak_16328	chr10	134231657	134231755	+	6.23121	NA	TTS (NM_138499)	TTS (NM_138499)	21004	NM_001098637	170394	Hs.527751	NM_138499	HPRD:11465	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_12517	chr10	26059119	26059224	+	6.23121	NA	Intergenic	HERVH-int|LTR|ERV1	118530	NR_108067	101929052	Hs.128298	NR_108067		LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
19-PTNLD28-TUMOR_peak_73615	chr3	196728947	196729112	+	6.22568	NA	promoter-TSS (NR_038285)	promoter-TSS (NR_038285)	-748	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MFI2-AS1	-	MFI2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_43491	chr17	73873299	73873589	+	6.22523	NA	intron (NM_033452, intron 1 of 5)	intron (NM_033452, intron 1 of 5)	1212	NM_033452	91107	Hs.293660	NM_033452	HPRD:15564	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
19-PTNLD28-TUMOR_peak_1069	chr1	16510829	16511012	+	6.22461	NA	Intergenic	Intergenic	28184	NM_153213	128272	Hs.591532	NM_153213	HPRD:10659	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding
19-PTNLD28-TUMOR_peak_98265	chr8	38384595	38384707	+	6.22348	NA	intron (NM_207412, intron 1 of 2)	intron (NM_207412, intron 1 of 2)	1529	NM_207412	389649	Hs.546586	NM_207412	HPRD:13474	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_39542	chr16	90211260	90211348	+	6.22348	NA	Intergenic	AluJr4|SINE|Alu	-68966	NM_001098173	11105	Hs.406695	NM_052996	HPRD:17903	PRDM7	PFM4|ZNF910	PR domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_36635	chr16	19532888	19532992	+	6.21695	NA	intron (NM_016641, intron 1 of 5)	intron (NM_016641, intron 1 of 5)	510	NM_016641	51573	Hs.512607	NM_016641	HPRD:12070	GDE1	363E6.2|MIR16	glycerophosphodiester phosphodiesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_8624	chr1	181221842	181221949	+	6.21695	NA	Intergenic	HERVK11-int|LTR|ERVK	16371	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_65519	chr22	39096633	39096725	+	6.21695	NA	promoter-TSS (NM_014876)	promoter-TSS (NM_014876)	-220	NM_014876	9929	Hs.3094	NM_014876	HPRD:08823	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49055	chr19	40727924	40728057	+	6.21582	NA	TTS (NM_024877)	TTS (NM_024877)	-3684	NM_152479	148014	Hs.631572	NM_152479	HPRD:08329	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
19-PTNLD28-TUMOR_peak_92936	chr7	66056503	66056612	+	6.21582	NA	intron (NR_111977, intron 1 of 5)	CpG	837	NR_111972	493754	Hs.732409	NR_002933		LOC493754	-	RAB guanine nucleotide exchange factor (GEF) 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_104433	chr9	91416787	91416934	+	6.21408	NA	Intergenic	MLT1G1-int|LTR|ERVL-MaLR	-56040	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_106669	chr9	137884766	137884964	+	6.21408	NA	Intergenic	Intergenic	-75059	NM_002003	2219	Hs.440898	NM_002003	HPRD:03153	FCN1	FCNM	ficolin (collagen/fibrinogen domain containing) 1	protein-coding
19-PTNLD28-TUMOR_peak_70947	chr3	133646521	133646620	+	6.21408	NA	TTS (NM_025041)	TTS (NM_025041)	2086	NM_025041	80111	Hs.287691	NM_025041	HPRD:07981	C3orf36	-	chromosome 3 open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_12505	chr10	25541641	25541893	+	6.21408	NA	intron (NM_020752, intron 2 of 10)	L1PA2|LINE|L1	-76562	NR_027333	100128811	Hs.700407	NR_027333	ENSG00000233642	GPR158-AS1	-	GPR158 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_77512	chr4	148939109	148939472	+	6.21408	NA	intron (NM_024605, intron 18 of 22)	intron (NM_024605, intron 18 of 22)	235544	NR_039962	100616246		NR_039962		MIR4799	-	microRNA 4799	ncRNA
19-PTNLD28-TUMOR_peak_38507	chr16	69796381	69796489	+	6.21408	NA	intron (NM_001270454, intron 1 of 23)	intron (NM_001270454, intron 1 of 23)	248	NM_007014	11060	Hs.408458	NM_007014	HPRD:03812	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_50437	chr19	56334209	56334395	+	6.21408	NA	intron (NM_145007, intron 3 of 11)	L1PA2|LINE|L1	9158	NM_001297743	204801	Hs.375039	NM_145007	HPRD:10110	NLRP11	CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7	NLR family, pyrin domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_19652	chr11	69152185	69152372	+	6.21408	NA	Intergenic	L1ME1|LINE|L1	90673	NM_001300924	26579	Hs.523848	NM_138768	HPRD:16130	MYEOV	OCIM	myeloma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_87289	chr6	39146030	39146151	+	6.21408	NA	Intergenic	Intergenic	51161	NM_003740	8645	Hs.444448	NM_003740	HPRD:04604	KCNK5	K2p5.1|TASK-2|TASK2	potassium channel, subfamily K, member 5	protein-coding
19-PTNLD28-TUMOR_peak_60001	chr20	17779358	17779717	+	6.21408	NA	Intergenic	Intergenic	98944	NM_001014977	140836	Hs.115366	NM_178477	HPRD:12759	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
19-PTNLD28-TUMOR_peak_21627	chr11	120079647	120079748	+	6.21408	NA	Intergenic	Intergenic	-2050	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_86448	chr6	30139909	30139997	+	6.21408	NA	exon (NM_033229, exon 7 of 7).3	exon (NM_033229, exon 7 of 7).3	8970	NM_033229	89870	Hs.591789	NM_033229	HPRD:15551	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
19-PTNLD28-TUMOR_peak_106253	chr9	130966223	130966472	+	6.21408	NA	intron (NM_001288737, intron 1 of 21)	CpG	315	NM_012127	25792	Hs.212395	NM_012127	HPRD:13061	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_106719	chr9	138991777	138991865	+	6.21408	NA	Intergenic	L1MB5|LINE|L1	-4690	NM_144653	138151	Hs.112895	NM_144653	HPRD:09831	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2, BEN and BTB (POZ) domain containing	protein-coding
19-PTNLD28-TUMOR_peak_65212	chr22	33199503	33199696	+	6.21365	NA	intron (NM_000362, intron 1 of 4)	intron (NM_000362, intron 1 of 4)	2797	NM_000362	7078	Hs.644633	NM_000362	HPRD:01785	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
19-PTNLD28-TUMOR_peak_57419	chr2	190306421	190306524	+	6.21365	NA	intron (NM_032168, intron 1 of 20)	intron (NM_032168, intron 1 of 20)	313	NM_032168	84128	Hs.399984	NM_032168	HPRD:07775	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
19-PTNLD28-TUMOR_peak_207	chr1	2144005	2144188	+	6.21365	NA	promoter-TSS (NM_001282670)	promoter-TSS (NM_001282670)	63	NM_001282670	199990	Hs.107101	NM_182533	HPRD:08707	C1orf86	FAAP20|FP7162	chromosome 1 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_69783	chr3	111854744	111854887	+	6.21365	NA	Intergenic	Intergenic	-2663	NM_001190259	257144	Hs.49614	NM_152785	HPRD:09695	GCSAM	GCAT2|GCET2|HGAL	germinal center-associated, signaling and motility	protein-coding
19-PTNLD28-TUMOR_peak_67554	chr3	38038471	38038561	+	6.21365	NA	intron (NM_015873, intron 4 of 18)	intron (NM_015873, intron 4 of 18)	3438	NM_015873	50853	Hs.103665	NM_015873	HPRD:18283	VILL	-	villin-like	protein-coding
19-PTNLD28-TUMOR_peak_60435	chr20	30310497	30310812	+	6.21241	NA	promoter-TSS (NM_001191)	promoter-TSS (NM_001191)	2	NM_138578	598	Hs.516966	NM_001191	HPRD:02497	BCL2L1	BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS	BCL2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21888	chr11	125215814	125216040	+	6.21123	NA	intron (NM_022062, intron 3 of 12)	intron (NM_022062, intron 3 of 12)	150279	NM_005103	9638	Hs.224008	NM_005103	HPRD:09212	FEZ1	-	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
19-PTNLD28-TUMOR_peak_1257	chr1	20301485	20301573	+	6.21123	NA	TTS (NM_000300)	TTS (NM_000300)	4623	NM_001161729	5320	Hs.466804	NM_000300	HPRD:01397	PLA2G2A	MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding
19-PTNLD28-TUMOR_peak_18438	chr11	47126211	47126322	+	6.21123	NA	intron (NM_001003676, intron 3 of 7)	intron (NM_001003676, intron 3 of 7)	72410	NM_001242832	84364	Hs.436204	NM_032389	HPRD:06069	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP-ribosylation factor GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_53658	chr2	79282252	79282469	+	6.21123	NA	Intergenic	HERVH-int|LTR|ERV1	29548	NM_198448	130120	Hs.447084	NM_198448	HPRD:10137	REG3G	LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429	regenerating islet-derived 3 gamma	protein-coding
19-PTNLD28-TUMOR_peak_88316	chr6	74035518	74035619	+	6.21123	NA	Intergenic	Intergenic	-15480	NR_027005	387097	Hs.732094	NR_027005		C6orf147	-	chromosome 6 open reading frame 147	ncRNA
19-PTNLD28-TUMOR_peak_59144	chr2	239172220	239172346	+	6.21123	NA	intron (NM_022817, intron 9 of 22)	intron (NM_022817, intron 9 of 22)	-23518	NM_001282434	55502	Hs.42949	NM_018645	HPRD:11021	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
19-PTNLD28-TUMOR_peak_27892	chr13	40086625	40086717	+	6.21123	NA	intron (NM_005780, intron 2 of 3)	AluY|SINE|Alu	90685	NM_005780	10186	Hs.507798	NM_005780	HPRD:09464	LHFP	-	lipoma HMGIC fusion partner	protein-coding
19-PTNLD28-TUMOR_peak_82935	chr5	144934091	144934223	+	6.21123	NA	Intergenic	Intergenic	280775	NM_138492	153768	Hs.314261	NM_138492	HPRD:14479	PRELID2	-	PRELI domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_31634	chr14	90489980	90490090	+	6.21123	NA	intron (NM_001008744, intron 14 of 15)	AluJb|SINE|Alu	-38074	NM_022054	56659	Hs.510191	NM_022054	HPRD:09563	KCNK13	K2p13.1|THIK-1|THIK1	potassium channel, subfamily K, member 13	protein-coding
19-PTNLD28-TUMOR_peak_34413	chr15	73634468	73634613	+	6.21123	NA	intron (NM_005477, intron 2 of 7)	intron (NM_005477, intron 2 of 7)	27065	NM_005477	10021	Hs.86941	NM_005477	HPRD:09240	HCN4	SSS2	hyperpolarization activated cyclic nucleotide-gated potassium channel 4	protein-coding
19-PTNLD28-TUMOR_peak_55982	chr2	137872843	137873151	+	6.21123	NA	intron (NM_001080427, intron 4 of 26)	intron (NM_001080427, intron 4 of 26)	124535	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_108679	chrX	70727576	70727793	+	6.21123	NA	intron (NR_104396, intron 1 of 2)	intron (NR_104396, intron 1 of 2)	-15385	NR_002226	27160	Hs.721806	NR_002226		INGX	ING1-like|ING2	inhibitor of growth family, X-linked, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_28024	chr13	43451973	43452223	+	6.21123	NA	Intergenic	MER67C|LTR|ERV1	-65400	NR_125747	103689845	Hs.422131	NR_125747		LINC01050	-	long intergenic non-protein coding RNA 1050	ncRNA
19-PTNLD28-TUMOR_peak_12745	chr10	30829378	30829484	+	6.21123	NA	Intergenic	Intergenic	89216	NM_183058	119180	Hs.522610	NM_183058	HPRD:14337	LYZL2	-	lysozyme-like 2	protein-coding
19-PTNLD28-TUMOR_peak_53006	chr2	62677835	62678199	+	6.21123	NA	Intergenic	Intergenic	55587	NM_198276	200728	Hs.308028	NM_198276	HPRD:15528	TMEM17	-	transmembrane protein 17	protein-coding
19-PTNLD28-TUMOR_peak_72385	chr3	172333993	172334155	+	6.21123	NA	Intergenic	Ricksha_0|DNA|MuDR	-92777	NM_001190942	8743	Hs.478275	NM_003810	HPRD:04670	TNFSF10	APO2L|Apo-2L|CD253|TL2|TRAIL	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
19-PTNLD28-TUMOR_peak_94433	chr7	101151230	101151395	+	6.21123	NA	intron (NM_133457, intron 3 of 12)	intron (NM_133457, intron 3 of 12)	60974	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_85569	chr6	14926083	14926171	+	6.21123	NA	Intergenic	Intergenic	-320079	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_35249	chr15	91565749	91565859	+	6.21123	NA	promoter-TSS (NM_018668)	promoter-TSS (NM_018668)	47	NM_018668	26276	Hs.745007	NM_018668	HPRD:10541	VPS33B	-	vacuolar protein sorting 33 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_72243	chr3	169756682	169756771	+	6.20850	NA	5' UTR (NM_014373, exon 2 of 4)	5' UTR (NM_014373, exon 2 of 4)	991	NM_014373	26996	Hs.231320	NM_014373	HPRD:17069	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
19-PTNLD28-TUMOR_peak_44714	chr18	13437773	13437872	+	6.20850	NA	intron (NM_181482, intron 3 of 5)	intron (NM_181482, intron 3 of 5)	-10289	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95227	chr7	129485524	129485616	+	6.20850	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-70716	NR_029615	406959		NR_029615	miRBase:MI0000273	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
19-PTNLD28-TUMOR_peak_22289	chr11	133821529	133821856	+	6.20850	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	4957	NM_001277285	22997	Hs.204121	NM_014987	ENSG00000080854	IGSF9B	-	immunoglobulin superfamily, member 9B	protein-coding
19-PTNLD28-TUMOR_peak_32484	chr15	21083230	21083466	+	6.20850	NA	Intergenic	CpG	-11367	NR_110752	102724631	Hs.722659	NM_207355		LOC102724631	POTE-15|POTEB	POTE ankyrin domain family, member B-like	protein-coding
19-PTNLD28-TUMOR_peak_40487	chr17	18761308	18761413	+	6.20850	NA	promoter-TSS (NM_002767)	promoter-TSS (NM_002767)	-21	NM_002767	5636	Hs.632236	NM_002767	HPRD:04789	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_87158	chr6	36986951	36987231	+	6.20815	NA	intron (NM_173558, intron 9 of 15)	intron (NM_173558, intron 9 of 15)	13668	NM_173558	221472	Hs.509664	NM_173558	HPRD:05478	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_53309	chr2	69910792	69911084	+	6.20578	NA	Intergenic	MIR3|SINE|MIR	-39961	NM_014911	22848	Hs.468878	NM_014911		AAK1	-	AP2 associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_61190	chr20	42285545	42285634	+	6.20578	NA	Intergenic	AluYc|SINE|Alu	-10070	NM_002466	4605	Hs.179718	NM_002466	HPRD:03247	MYBL2	B-MYB|BMYB	v-myb avian myeloblastosis viral oncogene homolog-like 2	protein-coding
19-PTNLD28-TUMOR_peak_80889	chr5	78532328	78532474	+	6.20578	NA	5' UTR (NM_152405, exon 1 of 11)	5' UTR (NM_152405, exon 1 of 11)	476	NM_152405	133746	Hs.482605	NM_152405	HPRD:05045	JMY	WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
19-PTNLD28-TUMOR_peak_9540	chr1	204477130	204477237	+	6.20578	NA	Intergenic	Intergenic	-8324	NM_001278518	4194	Hs.497492	NM_002393	HPRD:04082	MDM4	HDMX|MDMX|MRP1	MDM4, p53 regulator	protein-coding
19-PTNLD28-TUMOR_peak_95258	chr7	129788486	129788618	+	6.20338	NA	Intergenic	Intergenic	56786	NM_032842	84928	Hs.267245	NM_032842	HPRD:07871	TMEM209	NET31	transmembrane protein 209	protein-coding
19-PTNLD28-TUMOR_peak_24566	chr12	54772918	54773049	+	6.20299	NA	intron (NM_001290004, intron 3 of 8)	CpG	5531	NM_001290001	25946	Hs.505653	NM_015481	HPRD:16448	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
19-PTNLD28-TUMOR_peak_100394	chr8	121096840	121096947	+	6.20299	NA	Intergenic	Intergenic	-40454	NM_021110	7373	Hs.409662	NM_021110	HPRD:00379	COL14A1	UND	collagen, type XIV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_103587	chr9	69749712	69749829	+	6.20299	NA	intron (NR_121570, intron 3 of 4).3	intron (NR_121570, intron 3 of 4).3	8014	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_109637	chrX	139805707	139805949	+	6.20299	NA	intron (NR_104228, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	13904	NR_104228	286411	Hs.317627	NR_028344	ENSG00000203930	LINC00632	-	long intergenic non-protein coding RNA 632	ncRNA
19-PTNLD28-TUMOR_peak_78655	chr5	1247114	1247216	+	6.20230	NA	TTS (NM_182632)	TTS (NM_182632)	21695	NM_182632	348932	Hs.213284	NM_182632	HPRD:15396	SLC6A18	Xtrp2	solute carrier family 6 (neutral amino acid transporter), member 18	protein-coding
19-PTNLD28-TUMOR_peak_83770	chr5	168394413	168394511	+	6.20230	NA	intron (NM_003062, intron 4 of 35)	AluYa5|SINE|Alu	-45770	NR_109897	728095	Hs.145601	NR_109897	ENSG00000248222	CTB-174D11.1	-	uncharacterized LOC728095	ncRNA
19-PTNLD28-TUMOR_peak_78748	chr5	5492622	5492716	+	6.20230	NA	Intergenic	Intergenic	69883	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongator complex ELL subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_13353	chr10	46888831	46888939	+	6.20230	NA	Intergenic	L2|LINE|L2	-8756	NR_027632	414241	Hs.594331	NM_001098846	ENSG00000165874	FAM35BP	FAM35B|FAM35EP|bA38L15.1	family with sequence similarity 35, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22373	chr12	574052	574310	+	6.20230	NA	intron (NM_173593, intron 1 of 19)	intron (NM_173593, intron 1 of 19)	4638	NM_173593	283358	Hs.504416	NM_173593	HPRD:12514	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding
19-PTNLD28-TUMOR_peak_94605	chr7	103438493	103438588	+	6.20230	NA	intron (NM_005045, intron 3 of 64)	intron (NM_005045, intron 3 of 64)	191423	NM_005045	5649	Hs.655654	NM_005045	HPRD:02742	RELN	LIS2|PRO1598|RL	reelin	protein-coding
19-PTNLD28-TUMOR_peak_23566	chr12	29302387	29302511	+	6.20230	NA	intron (NM_001271783, intron 1 of 11)	CpG	513	NM_001271783	55711	Hs.728955	NM_018099	HPRD:14723	FAR2	MLSTD1|SDR10E2	fatty acyl CoA reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_78481	chr4	189972551	189972662	+	6.20230	NA	Intergenic	Intergenic	595874	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_54962	chr2	112258280	112258386	+	6.20230	NA	Intergenic	L1ME1|LINE|L1	-5641	NR_024373	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-1HG	AGD2|LINC00978	MIR4435-1 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_74163	chr4	6421419	6421553	+	6.20230	NA	intron (NM_001206996, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	1359	NM_001206996	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_93262	chr7	73589099	73589313	+	6.20184	NA	intron (NM_031992, intron 1 of 5)	CpG	500	NM_022170	7458	Hs.520943	NM_022170	HPRD:11940	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
19-PTNLD28-TUMOR_peak_43493	chr17	73874604	73874698	+	6.19960	NA	promoter-TSS (NM_033452)	promoter-TSS (NM_033452)	5	NM_033452	91107	Hs.293660	NM_033452	HPRD:15564	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
19-PTNLD28-TUMOR_peak_86345	chr6	28831940	28832176	+	6.19943	NA	promoter-TSS (NR_033379).3	promoter-TSS (NR_033379).3	-604	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_62564	chr20	61846573	61846665	+	6.19530	NA	intron (NM_017798, intron 2 of 4)	intron (NM_017798, intron 2 of 4)	919	NM_017798	54915	Hs.744852	NM_017798	HPRD:11691	YTHDF1	C20orf21	YTH domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_42770	chr17	60556600	60557035	+	6.19460	NA	intron (NM_001284333, intron 1 of 22)	CpG	431	NM_001284333	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_103458	chr9	66954840	66954957	+	6.19333	NA	Intergenic	REP522|Satellite|telo	31931	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_83103	chr5	148822223	148822334	+	6.19178	NA	Intergenic	Intergenic	12069	NR_029686	406937		NR_029686	miRBase:MI0000461	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
19-PTNLD28-TUMOR_peak_19469	chr11	67084693	67084781	+	6.19178	NA	promoter-TSS (NR_024469)	promoter-TSS (NR_024469)	-573	NR_024469	100130987	Hs.664585	NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
19-PTNLD28-TUMOR_peak_47049	chr19	8390155	8390243	+	6.19134	NA	intron (NM_198471, intron 7 of 10)	AluSz|SINE|Alu	3815	NM_001031	6234	Hs.153177	NM_001031		RPS28	S28	ribosomal protein S28	protein-coding
19-PTNLD28-TUMOR_peak_104575	chr9	94558150	94558333	+	6.19098	NA	intron (NM_004560, intron 1 of 8)	intron (NM_004560, intron 1 of 8)	154203	NM_004560	4920	Hs.98255	NM_004560	HPRD:03822	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_31015	chr14	69557067	69557155	+	6.19098	NA	3' UTR (NM_001284208, exon 7 of 7)	3' UTR (NM_001284208, exon 7 of 7)	62205	NM_001284207	8816	Hs.509780	NM_003861	HPRD:16032	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
19-PTNLD28-TUMOR_peak_46663	chr19	2489347	2489460	+	6.19098	NA	Intergenic	CpG	13280	NM_015675	4616	Hs.110571	NM_015675	HPRD:05382	GADD45B	GADD45BETA|MYD118	growth arrest and DNA-damage-inducible, beta	protein-coding
19-PTNLD28-TUMOR_peak_16702	chr11	3011970	3012118	+	6.18783	NA	intron (NM_005969, intron 1 of 15)	MIR|SINE|MIR	1563	NM_005969	4676	Hs.731784	NM_005969	HPRD:11873	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1-like 4	protein-coding
19-PTNLD28-TUMOR_peak_35752	chr16	2014445	2014538	+	6.18783	NA	promoter-TSS (NR_003020)	promoter-TSS (NR_003020)	336	NM_002952	6187	Hs.356366	NM_002952	HPRD:04690	RPS2	LLREP3|S2	ribosomal protein S2	protein-coding
19-PTNLD28-TUMOR_peak_40465	chr17	18339149	18339277	+	6.18783	NA	Intergenic	Intergenic	-4009	NR_073414	729252	Hs.585811	NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_53821	chr2	85830735	85830823	+	6.18680	NA	promoter-TSS (NR_033179)	promoter-TSS (NR_033179)	814	NR_046347	10713	Hs.654745	NM_006590	HPRD:07165	USP39	65K|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
19-PTNLD28-TUMOR_peak_34681	chr15	78297322	78297447	+	6.18314	NA	intron (NM_144572, intron 10 of 12)	intron (NM_144572, intron 10 of 12)	-10817	NR_026998	91450	Hs.406766	NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
19-PTNLD28-TUMOR_peak_74419	chr4	9160340	9160433	+	6.18314	NA	Intergenic	Intergenic	-51997	NM_001256852	100287144	Hs.741130	NM_001256852	ENSG00000231396	USP17L10	-	ubiquitin specific peptidase 17-like family member 10	protein-coding
19-PTNLD28-TUMOR_peak_11512	chr1	247274075	247274168	+	6.18314	NA	3' UTR (NM_207401, exon 1 of 1)	3' UTR (NM_207401, exon 1 of 1)	1598	NM_207401	388759	Hs.456511	NM_207401	HPRD:13511	C1orf229	-	chromosome 1 open reading frame 229	protein-coding
19-PTNLD28-TUMOR_peak_106537	chr9	135547828	135548067	+	6.18314	NA	intron (NM_012204, intron 1 of 4)	intron (NM_012204, intron 1 of 4)	-2159	NM_022779	64794	Hs.660767	NM_022779	HPRD:10860	DDX31	PPP1R25	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	protein-coding
19-PTNLD28-TUMOR_peak_11336	chr1	243244156	243244269	+	6.18314	NA	intron (NR_029401, intron 9 of 17)	AluJr4|SINE|Alu	20834	NR_029401	731275	Hs.722350	NR_029401		LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
19-PTNLD28-TUMOR_peak_47449	chr19	12888512	12888670	+	6.18019	NA	Intergenic	Intergenic	-2157	NM_013312	29911	Hs.30792	NM_013312	HPRD:09698	HOOK2	HK2	hook microtubule-tethering protein 2	protein-coding
19-PTNLD28-TUMOR_peak_9643	chr1	205473601	205473695	+	6.17762	NA	promoter-TSS (NM_212502)	promoter-TSS (NM_212502)	-36	NM_212503	5129	Hs.445402	NM_002596	HPRD:01354	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin-dependent kinase 18	protein-coding
19-PTNLD28-TUMOR_peak_87290	chr6	39146259	39146420	+	6.17757	NA	Intergenic	Intergenic	50912	NM_003740	8645	Hs.444448	NM_003740	HPRD:04604	KCNK5	K2p5.1|TASK-2|TASK2	potassium channel, subfamily K, member 5	protein-coding
19-PTNLD28-TUMOR_peak_82067	chr5	131422157	131422400	+	6.17757	NA	Intergenic	Intergenic	12793	NM_000758	1437	Hs.1349	NM_000758	HPRD:00734	CSF2	GMCSF	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_70641	chr3	128411105	128411341	+	6.17757	NA	Intergenic	LTR54B|LTR|ERV1	-33756	NM_004637	7879	Hs.744853	NM_004637	HPRD:03805	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_62894	chr21	19103225	19103319	+	6.17757	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	61554	NR_038870	246312	Hs.473425	NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_66727	chr3	13324747	13324835	+	6.17757	NA	Intergenic	CpG	137028	NM_024923	23225	Hs.475525	NM_024923	HPRD:06368	NUP210	GP210|POM210	nucleoporin 210kDa	protein-coding
19-PTNLD28-TUMOR_peak_54697	chr2	106724090	106724232	+	6.17757	NA	intron (NR_045607, intron 9 of 13)	intron (NR_045607, intron 9 of 13)	31176	NM_001253876	80146	Hs.469561	NM_025076	HPRD:15642	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_54661	chr2	105946433	105946562	+	6.17757	NA	promoter-TSS (NM_001142621)	promoter-TSS (NM_001142621)	-326	NM_004257	9392	Hs.446350	NM_004257	HPRD:06948	TGFBRAP1	TRAP-1|TRAP1	transforming growth factor, beta receptor associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_27454	chr13	23949786	23949945	+	6.17757	NA	promoter-TSS (NM_001278055)	promoter-TSS (NM_001278055)	-183	NM_001278055	26278	Hs.159492	NM_014363	HPRD:05135	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
19-PTNLD28-TUMOR_peak_14996	chr10	96590184	96590402	+	6.17757	NA	intron (NM_000769, intron 6 of 8)	L1PA2|LINE|L1	67855	NM_000769	1557	Hs.282409	NM_000769		CYP2C19	CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19	cytochrome P450, family 2, subfamily C, polypeptide 19	protein-coding
19-PTNLD28-TUMOR_peak_103026	chr9	37999937	38000051	+	6.17757	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	69216	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_76739	chr4	118954640	118955062	+	6.17757	NA	promoter-TSS (NM_004784)	promoter-TSS (NM_004784)	-649	NM_004784	9348	Hs.480596	NM_004784	ENSG00000164100	NDST3	HSST3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
19-PTNLD28-TUMOR_peak_23851	chr12	43138406	43138502	+	6.17757	NA	Intergenic	Intergenic	-98154	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_80806	chr5	76164019	76164193	+	6.17757	NA	intron (NM_130772, intron 1 of 4)	intron (NM_130772, intron 1 of 4)	18280	NM_130772	170591	Hs.482563	NM_130772		S100Z	Gm625|S100-zeta	S100 calcium binding protein Z	protein-coding
19-PTNLD28-TUMOR_peak_78246	chr4	184414505	184414604	+	6.17757	NA	Intergenic	L1MEb|LINE|L1	11114	NR_033995	389247	Hs.385787	NR_033995		LOC389247	-	uncharacterized LOC389247	ncRNA
19-PTNLD28-TUMOR_peak_59306	chr2	242486680	242486861	+	6.17757	NA	intron (NR_033346, intron 1 of 1)	intron (NR_033346, intron 1 of 1)	-11376	NM_032515	666	Hs.293753	NM_032515	HPRD:05657	BOK	BCL2L9|BOKL	BCL2-related ovarian killer	protein-coding
19-PTNLD28-TUMOR_peak_25926	chr12	104670464	104670591	+	6.17522	NA	intron (NM_001093771, intron 3 of 16)	intron (NM_001093771, intron 3 of 16)	-9933	NM_182742	7296	Hs.654922	NM_003330	HPRD:03068	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_3094	chr1	44966456	44966544	+	6.17481	NA	intron (NM_018150, intron 2 of 14)	intron (NM_018150, intron 2 of 14)	-44665	NR_049849	100847089		NR_049849		MIR5584	-	microRNA 5584	ncRNA
19-PTNLD28-TUMOR_peak_107130	chrUn_gl000222	133656	134002	+	6.17481	NA	Intergenic	CpG	-44519	NR_037925	647476	Hs.274541	NR_037925		FLJ20518	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31937	chr14	97827606	97827864	+	6.17481	NA	Intergenic	Intergenic	-97418	NR_110165	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_99435	chr8	87355213	87355301	+	6.17481	NA	intron (NM_007013, intron 1 of 24)	CpG	263	NM_007013	11059	Hs.655189	NM_007013	HPRD:03811	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_68705	chr3	62859693	62859969	+	6.17481	NA	intron (NM_183393, intron 1 of 26)	CpG	1233	NM_003716	8618	Hs.654933	NM_003716	HPRD:05236	CADPS	CADPS1|CAPS|CAPS1	Ca++-dependent secretion activator	protein-coding
19-PTNLD28-TUMOR_peak_22310	chr11	134202401	134202510	+	6.17481	NA	intron (NM_138342, intron 1 of 19)	intron (NM_138342, intron 1 of 19)	687	NM_138342	89944	Hs.436178	NM_138342	HPRD:14265	GLB1L2	MST114|MSTP114	galactosidase, beta 1-like 2	protein-coding
19-PTNLD28-TUMOR_peak_17946	chr11	33892019	33892151	+	6.17481	NA	promoter-TSS (NM_001142316)	promoter-TSS (NM_001142316)	-576	NM_001142315	4005	Hs.34560	NM_005574	HPRD:01586	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2 (rhombotin-like 1)	protein-coding
19-PTNLD28-TUMOR_peak_15395	chr10	104954064	104954194	+	6.17481	NA	Intergenic	Intergenic	-1066	NM_001134373	22978	Hs.97439	NM_012229	HPRD:02686	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
19-PTNLD28-TUMOR_peak_40135	chr17	8925531	8925804	+	6.17481	NA	5' UTR (NM_004822, exon 2 of 7)	5' UTR (NM_004822, exon 2 of 7)	808	NM_004822	9423	Hs.660885	NM_004822	HPRD:03368	NTN1	NTN1L	netrin 1	protein-coding
19-PTNLD28-TUMOR_peak_106345	chr9	132037984	132038225	+	6.17481	NA	Intergenic	L2|LINE|L2	-6591	NR_121587	101929331	Hs.522428	NR_121587	ENSG00000224307	LOC101929331	-	uncharacterized LOC101929331	ncRNA
19-PTNLD28-TUMOR_peak_83943	chr5	171710022	171710247	+	6.17450	NA	intron (NM_152277, intron 1 of 2)	intron (NM_152277, intron 1 of 2)	661	NM_152277	92181	Hs.131570	NM_152277	HPRD:13118	UBTD2	DCUBP	ubiquitin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_2901	chr1	42636875	42637286	+	6.17450	NA	Intergenic	Intergenic	-6685	NM_033553	2980	Hs.778	NM_033553	HPRD:00767	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A (guanylin)	protein-coding
19-PTNLD28-TUMOR_peak_97588	chr8	22417491	22417579	+	6.17287	NA	intron (NM_005775, intron 5 of 20)	AluSx|SINE|Alu	-5644	NM_001018003	10174	Hs.528572	NM_005775	HPRD:11535	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_103811	chr9	74656685	74657069	+	6.17043	NA	Intergenic	Intergenic	18644	NM_001128618	138240	Hs.371235	NM_001128618	ENSG00000204669	C9orf57	-	chromosome 9 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_17508	chr11	18433751	18433921	+	6.17043	NA	promoter-TSS (NM_002301)	promoter-TSS (NM_002301)	-17	NM_002301	3948	Hs.654377	NM_002301	HPRD:01027	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
19-PTNLD28-TUMOR_peak_33688	chr15	57211564	57211680	+	6.17043	NA	promoter-TSS (NR_015419)	promoter-TSS (NR_015419)	789	NM_207038	6938	Hs.511504	NM_003205	HPRD:02725	TCF12	CRS3|HEB|HTF4|HsT17266|bHLHb20	transcription factor 12	protein-coding
19-PTNLD28-TUMOR_peak_92843	chr7	64029949	64030519	+	6.17043	NA	Intergenic	CpG	-4839	NR_077227	100128885	Hs.586332	NR_077227		LOC100128885	-	uncharacterized LOC100128885	ncRNA
19-PTNLD28-TUMOR_peak_16161	chr10	126953604	126953712	+	6.17043	NA	Intergenic	Intergenic	-104034	NM_001083914	1488	Hs.501345	NM_001329	HPRD:04016	CTBP2	-	C-terminal binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_76405	chr4	102276987	102277188	+	6.17043	NA	Intergenic	Intergenic	8153	NR_033874	90024	Hs.534513	NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
19-PTNLD28-TUMOR_peak_53000	chr2	62532377	62532487	+	6.17043	NA	Intergenic	Intergenic	99471	NR_049824	100847087		NR_049824	miRBase:MI0018171	MIR5192	-	microRNA 5192	ncRNA
19-PTNLD28-TUMOR_peak_22726	chr12	6351349	6351532	+	6.17043	NA	Intergenic	L3|LINE|CR1	41958	NM_001769	928	Hs.114286	NM_001769	HPRD:00880	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
19-PTNLD28-TUMOR_peak_49986	chr19	51206151	51206277	+	6.17043	NA	intron (NM_016148, intron 10 of 22)	intron (NM_016148, intron 10 of 22)	13981	NM_016148	50944	Hs.274255	NM_016148	HPRD:05413	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_62561	chr20	61814828	61814926	+	6.17043	NA	Intergenic	Intergenic	5025	NR_029670	406909		NR_029670	miRBase:MI0000445	MIR124-3	MIRN124-3|MIRN124A3	microRNA 124-3	ncRNA
19-PTNLD28-TUMOR_peak_72121	chr3	161090245	161090449	+	6.17043	NA	promoter-TSS (NM_001040100)	promoter-TSS (NM_001040100)	-476	NM_001040100	165679	Hs.369104	NM_145035		SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase, small subunit B	protein-coding
19-PTNLD28-TUMOR_peak_96353	chr7	150864735	150864867	+	6.16846	NA	promoter-TSS (NM_001098834)	promoter-TSS (NM_001098834)	-166	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_42715	chr17	58650638	58650734	+	6.16846	NA	Intergenic	Intergenic	-26858	NM_003620	8493	Hs.286073	NM_003620		PPM1D	PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent, 1D	protein-coding
19-PTNLD28-TUMOR_peak_4560	chr1	84764520	84764822	+	6.16846	NA	intron (NM_001010971, intron 1 of 3)	CpG	622	NM_001010971	148418	Hs.591445	NM_001010971	HPRD:17302	SAMD13	-	sterile alpha motif domain containing 13	protein-coding
19-PTNLD28-TUMOR_peak_65114	chr22	31422620	31422817	+	6.16846	NA	Intergenic	SVA_D|Other|Other	-54564	NM_006932	6525	Hs.149098	NM_006932	HPRD:03675	SMTN	-	smoothelin	protein-coding
19-PTNLD28-TUMOR_peak_10207	chr1	222008739	222008827	+	6.16846	NA	Intergenic	Intergenic	-93265	NM_007207	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_43016	chr17	64670086	64670237	+	6.16846	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-113029	NR_030364	693219		NR_030364		MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
19-PTNLD28-TUMOR_peak_43279	chr17	71766636	71766898	+	6.16846	NA	intron (NR_027146, intron 2 of 3)	intron (NR_027146, intron 2 of 3)	-16194	NR_040020	400620	Hs.348644	NR_040020	ENSG00000234721	LOC400620	-	uncharacterized LOC400620	ncRNA
19-PTNLD28-TUMOR_peak_74366	chr4	8594407	8594655	+	6.16846	NA	5' UTR (NM_003652, exon 1 of 10)	5' UTR (NM_003652, exon 1 of 10)	144	NM_001014448	8532	Hs.61995	NM_003652	HPRD:04376	CPZ	-	carboxypeptidase Z	protein-coding
19-PTNLD28-TUMOR_peak_10049	chr1	215586714	215586845	+	6.16846	NA	Intergenic	HERVH-int|LTR|ERV1	-153956	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_106394	chr9	132546160	132546260	+	6.16846	NA	Intergenic	Intergenic	-19222	NM_014506	27348	Hs.252682	NM_014506	HPRD:16270	TOR1B	DQ1	torsin family 1, member B (torsin B)	protein-coding
19-PTNLD28-TUMOR_peak_31154	chr14	71707977	71708257	+	6.16846	NA	Intergenic	Intergenic	-156937	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_81208	chr5	94956217	94956478	+	6.16846	NA	exon (NM_199243, exon 1 of 1)	exon (NM_199243, exon 1 of 1)	367	NM_199243	285601	Hs.143315	NM_199243		GPR150	PGR11	G protein-coupled receptor 150	protein-coding
19-PTNLD28-TUMOR_peak_56339	chr2	152835370	152835510	+	6.16846	NA	intron (NM_001005746, intron 2 of 13)	intron (NM_001005746, intron 2 of 13)	-4955	NM_001005747	785	Hs.120725	NM_000726	HPRD:09057	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
19-PTNLD28-TUMOR_peak_25247	chr12	70831436	70831542	+	6.16846	NA	Intergenic	Intergenic	71427	NM_014505	27345	Hs.525529	NM_014505	HPRD:05564	KCNMB4	-	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding
19-PTNLD28-TUMOR_peak_87764	chr6	45803885	45804035	+	6.16846	NA	Intergenic	MIR|SINE|MIR	101374	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_82357	chr5	135558734	135558946	+	6.16846	NA	intron (NM_001167577, intron 9 of 10)	intron (NM_001167577, intron 9 of 10)	-29989	NR_024418	389332	Hs.127680	NR_024418	ENSG00000271824	LOC389332	-	uncharacterized LOC389332	ncRNA
19-PTNLD28-TUMOR_peak_8443	chr1	178208319	178208483	+	6.16846	NA	intron (NM_170692, intron 1 of 17)	intron (NM_170692, intron 1 of 17)	-102205	NM_004841	9462	Hs.496139	NM_004841	HPRD:05845	RASAL2	NGAP	RAS protein activator like 2	protein-coding
19-PTNLD28-TUMOR_peak_300	chr1	3700400	3700526	+	6.16846	NA	intron (NM_020710, intron 4 of 6)	intron (NM_020710, intron 4 of 6)	11112	NM_001163724	388588	Hs.22047	NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
19-PTNLD28-TUMOR_peak_47519	chr19	13326888	13327042	+	6.16846	NA	intron (NM_001174080, intron 38 of 46)	intron (NM_001174080, intron 38 of 46)	65683	NM_004907	9592	Hs.501629	NM_004907	HPRD:09997	IER2	ETR101	immediate early response 2	protein-coding
19-PTNLD28-TUMOR_peak_102983	chr9	37453932	37454047	+	6.16846	NA	intron (NM_014872, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	11418	NM_014872	9925	Hs.161276	NM_014872	HPRD:08829	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_33563	chr15	51386997	51387085	+	6.16846	NA	intron (NM_207381, intron 1 of 2)	CpG-7878	10432	NM_207381	388121	Hs.306343	NM_207381	HPRD:13452	TNFAIP8L3	-	tumor necrosis factor, alpha-induced protein 8-like 3	protein-coding
19-PTNLD28-TUMOR_peak_74614	chr4	15704656	15704827	+	6.16846	NA	5' UTR (NM_004334, exon 1 of 9)	5' UTR (NM_004334, exon 1 of 9)	168	NM_004334	683	Hs.720344	NM_004334	HPRD:02665	BST1	CD157	bone marrow stromal cell antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_26250	chr12	110500791	110501019	+	6.16846	NA	intron (NM_207435, intron 2 of 4)	AluSx1|SINE|Alu	4595	NM_207435	400073	Hs.44817	NM_207435	HPRD:13443	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
19-PTNLD28-TUMOR_peak_64462	chr22	20810630	20810846	+	6.16846	NA	intron (NR_033825, intron 4 of 5)	intron (NR_033825, intron 4 of 5)	-18592	NM_153334	91179	Hs.474251	NM_153334	HPRD:15299	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_104754	chr9	97769963	97770089	+	6.16846	NA	intron (NM_032823, intron 11 of 14)	intron (NM_032823, intron 11 of 14)	-57606	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_7840	chr1	164591758	164591906	+	6.16846	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	63235	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_37566	chr16	35285408	35285568	+	6.16846	NA	Intergenic	ALR/Alpha|Satellite|centr	304565	NR_033985	400533	Hs.499135	NR_033985	ENSG00000261122	FLJ26245	-	uncharacterized LOC400533	ncRNA
19-PTNLD28-TUMOR_peak_25558	chr12	91330346	91330692	+	6.16846	NA	intron (NR_038868, intron 1 of 4)	L1PB1|LINE|L1	18434	NM_152638	196477	Hs.128574	NM_152638	HPRD:14505	CCER1	C12orf12	coiled-coil glutamate-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_19059	chr11	63304249	63304463	+	6.16846	NA	promoter-TSS (NM_004585)	promoter-TSS (NM_004585)	83	NM_004585	5920	Hs.17466	NM_004585	HPRD:05479	RARRES3	HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3	retinoic acid receptor responder (tazarotene induced) 3	protein-coding
19-PTNLD28-TUMOR_peak_66343	chr3	7679436	7679699	+	6.16846	NA	intron (NM_181874, intron 8 of 10)	intron (NM_181874, intron 8 of 10)	-102596	NR_046606	100873937	Hs.570608	NR_046606		GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107531	chrX	10585892	10586208	+	6.16846	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	2624	NM_033289	4281	Hs.27695	NM_000381	HPRD:02047	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
19-PTNLD28-TUMOR_peak_22447	chr12	1800600	1800827	+	6.15828	NA	intron (NM_024551, intron 1 of 7)	CpG	466	NM_024551	79602	Hs.371642	NM_024551	HPRD:06403	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_38313	chr16	67261213	67261402	+	6.15828	NA	promoter-TSS (NM_012163)	promoter-TSS (NM_012163)	291	NM_014187	29100	Hs.433203	NM_014187	HPRD:13710	TMEM208	-	transmembrane protein 208	protein-coding
19-PTNLD28-TUMOR_peak_62543	chr20	61531711	61531921	+	6.15828	NA	intron (NM_080797, intron 6 of 14)	intron (NM_080797, intron 6 of 14)	26087	NM_001193369	11083	Hs.517172	NM_022105	HPRD:10363	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
19-PTNLD28-TUMOR_peak_70691	chr3	128998047	128998135	+	6.15828	NA	intron (NM_001006109, intron 1 of 6)	CpG	274	NM_001006109	56941	Hs.458320	NM_020187	HPRD:13119	HMCES	C3orf37|SRAPD1	5-hydroxymethylcytosine (hmC) binding, ES cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_60500	chr20	31111128	31111340	+	6.15828	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	13472	NR_110619	101929698	Hs.638392	NR_110619		LOC101929698	-	uncharacterized LOC101929698	ncRNA
19-PTNLD28-TUMOR_peak_2776	chr1	41268076	41268169	+	6.15828	NA	intron (NM_004700, intron 1 of 13)	CpG	18438	NM_004700	9132	Hs.473058	NM_004700	HPRD:04641	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel, KQT-like subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_100593	chr8	125437658	125437746	+	6.15828	NA	Intergenic	Intergenic	-25346	NM_017956	55039	Hs.9925	NM_017956	HPRD:07947	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_107201	chrUn_gl000225	86255	86390	+	6.15647	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
19-PTNLD28-TUMOR_peak_84613	chr5	180729223	180729334	+	6.15638	NA	Intergenic	AluJr4|SINE|Alu	-21229	NR_028325	100132062	Hs.722350	NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
19-PTNLD28-TUMOR_peak_86811	chr6	33239036	33239222	+	6.15638	NA	promoter-TSS (NM_022551).4	promoter-TSS (NM_022551).4	613	NM_001289175	6293	Hs.480356	NM_022553	HPRD:09142	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	vacuolar protein sorting 52 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_109562	chrX	134654033	134654208	+	6.15638	NA	promoter-TSS (NM_182540)	promoter-TSS (NM_182540)	-435	NM_182540	203522	Hs.496829	NM_182540	HPRD:06618	DDX26B	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	protein-coding
19-PTNLD28-TUMOR_peak_46470	chr19	216517	216635	+	6.15638	NA	Intergenic	L2a|LINE|L2	-14367	NR_028324	399844	Hs.356758	NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
19-PTNLD28-TUMOR_peak_104410	chr9	91150999	91151098	+	6.15504	NA	intron (NM_145283, intron 1 of 2)	intron (NM_145283, intron 1 of 2)	1032	NM_001161625	158046	Hs.734507	NM_145283	HPRD:12938	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_16983	chr11	8737220	8737327	+	6.15504	NA	exon (NM_005418, exon 9 of 23)	exon (NM_005418, exon 9 of 23)	30287	NR_002977	677826	Hs.745552	NR_002977		SNORA45B	ACA3-2|SNORA45	small nucleolar RNA, H/ACA box 45B	snoRNA
19-PTNLD28-TUMOR_peak_26887	chr12	123446310	123446413	+	6.15383	NA	intron (NM_001243013, intron 1 of 10)	MIR3|SINE|MIR	4695	NM_203444	23457	Hs.511951	NM_019624	HPRD:09262	ABCB9	EST122234|TAPL	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding
19-PTNLD28-TUMOR_peak_10325	chr1	223936903	223937060	+	6.15383	NA	intron (NM_001748, intron 6 of 20)	CpG-2229	36862	NM_001748	824	Hs.350899	NM_001748	HPRD:00254	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2, (m/II) large subunit	protein-coding
19-PTNLD28-TUMOR_peak_32211	chr14	103799792	103799897	+	6.15383	NA	promoter-TSS (NM_001969)	promoter-TSS (NM_001969)	-495	NM_001969	1983	Hs.433702	NM_001969	HPRD:03417	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
19-PTNLD28-TUMOR_peak_109989	chrX	153743738	153743889	+	6.15246	NA	intron (NM_001282311, intron 1 of 9)	intron (NM_001282311, intron 1 of 9)	753	NM_021806	60343	Hs.289108	NM_021806	HPRD:06505	FAM3A	2.19|DLD|DXS560S|XAP-7	family with sequence similarity 3, member A	protein-coding
19-PTNLD28-TUMOR_peak_85157	chr6	7315763	7315884	+	6.15021	NA	Intergenic	LTR12C|LTR|ERV1	-2276	NM_003144	6745	Hs.114033	NM_003144	HPRD:02924	SSR1	TRAPA	signal sequence receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_88873	chr6	99873726	99873897	+	6.14696	NA	promoter-TSS (NM_015491)	promoter-TSS (NM_015491)	-604	NM_032870	25957	Hs.520287	NM_015491	HPRD:10787	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN-interacting serine/arginine-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_60985	chr20	37435688	37436065	+	6.14696	NA	intron (NM_015568, intron 1 of 10)	intron (NM_015568, intron 1 of 10)	1528	NM_001172735	26051	Hs.45719	NM_015568	HPRD:15168	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1, regulatory subunit 16B	protein-coding
19-PTNLD28-TUMOR_peak_4805	chr1	90441239	90441356	+	6.14696	NA	Intergenic	Intergenic	19228	NR_002830	492303	Hs.550796	NR_002830		GEMIN8P4	-	gem (nuclear organelle) associated protein 8 pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_90919	chr7	2491531	2491743	+	6.14696	NA	Intergenic	Intergenic	14239	NR_108066	101927181	Hs.288853	NR_108066		LOC101927181	-	uncharacterized LOC101927181	ncRNA
19-PTNLD28-TUMOR_peak_14383	chr10	76871832	76871956	+	6.14696	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	501	NM_144660	142891	Hs.744986	NM_144660	HPRD:18014	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_106806	chr9	139941049	139941163	+	6.14696	NA	promoter-TSS (NM_015392)	promoter-TSS (NM_015392)	-430	NM_015392	56654	Hs.719906	NM_015392	HPRD:12048	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control, 1	protein-coding
19-PTNLD28-TUMOR_peak_8638	chr1	181394217	181394311	+	6.14696	NA	Intergenic	Intergenic	-58422	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_17457	chr11	17373446	17373609	+	6.14696	NA	exon (NM_001202439, exon 1 of 5)	exon (NM_001202439, exon 1 of 5)	218	NM_001202439	374383	Hs.146274	NM_001009913	HPRD:16820	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_18932	chr11	61740151	61740558	+	6.14658	NA	Intergenic	Intergenic	-5222	NM_002032	2495	Hs.524910	NM_002032	HPRD:00615	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin, heavy polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_86344	chr6	28831437	28831579	+	6.14658	NA	promoter-TSS (NR_033379).3	promoter-TSS (NR_033379).3	-54	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_36449	chr16	14835275	14835372	+	6.14600	NA	Intergenic	AluY|SINE|Alu	-9347	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_92674	chr7	55816257	55816465	+	6.14564	NA	Intergenic	Intergenic	-44101	NR_003949	360132	Hs.446691	NM_182827	HPRD:16900	FKBP9P1	FKBP9L	FK506 binding protein 9 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_3356	chr1	48408110	48408216	+	6.14564	NA	intron (NM_001194986, intron 2 of 6)	intron (NM_001194986, intron 2 of 6)	54399	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_95323	chr7	130678585	130678681	+	6.14546	NA	intron (NR_109855, intron 2 of 4)	AluJo|SINE|Alu	80410	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_19605	chr11	68609303	68609393	+	6.14161	NA	promoter-TSS (NM_001876)	promoter-TSS (NM_001876)	51	NM_001876	1374	Hs.503043	NM_001876	HPRD:02755	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A (liver)	protein-coding
19-PTNLD28-TUMOR_peak_50817	chr2	1838548	1838656	+	6.14152	NA	intron (NM_015025, intron 21 of 24)	intron (NM_015025, intron 21 of 24)	-90283	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_45960	chr18	56516075	56516172	+	6.14152	NA	Intergenic	L2c|LINE|L2	-13938	NM_018181	55205	Hs.529023	NM_018181	HPRD:11724	ZNF532	-	zinc finger protein 532	protein-coding
19-PTNLD28-TUMOR_peak_78599	chr5	587133	587330	+	6.14152	NA	Intergenic	Intergenic	25094	NR_103444	100996325	Hs.575249	NR_103444		LOC100996325	-	uncharacterized LOC100996325	ncRNA
19-PTNLD28-TUMOR_peak_1296	chr1	21044065	21044261	+	6.14152	NA	exon (NM_001122819, exon 1 of 15)	exon (NM_001122819, exon 1 of 15)	347	NM_020816	57576	Hs.130411	NM_020816	HPRD:10388	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
19-PTNLD28-TUMOR_peak_76954	chr4	124897555	124897867	+	6.14152	NA	Intergenic	Intergenic	202292	NR_027106	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
19-PTNLD28-TUMOR_peak_60137	chr20	21486969	21487140	+	6.14152	NA	Intergenic	CpG	7610	NM_002509	4821	Hs.516922	NM_002509	HPRD:05213	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_68139	chr3	49561620	49561708	+	6.14152	NA	intron (NM_001165928, intron 5 of 5)	intron (NM_001165928, intron 5 of 5)	30135	NR_038866	100132677	Hs.435651	NR_038866	ENSG00000226913	BSN-AS2	-	BSN antisense RNA 2 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_61957	chr20	50652209	50652297	+	6.14152	NA	Intergenic	Intergenic	156271	NM_199426	55734	Hs.473082	NM_018197	HPRD:15728	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_49484	chr19	46802253	46802449	+	6.14152	NA	intron (NR_046936, intron 1 of 3)	intron (NR_046936, intron 1 of 3)	718	NM_152796	64344	Hs.420830	NM_022462	HPRD:17104	HIF3A	HIF-3A|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_23662	chr12	32142657	32142755	+	6.14152	NA	intron (NM_018169, intron 5 of 5)	AluSx|SINE|Alu	4096	NR_046944	100873778		NR_046944		RNU6-78P	RNU6-78	RNA, U6 small nuclear 78, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_46615	chr19	1885428	1885630	+	6.14152	NA	promoter-TSS (NM_031213)	promoter-TSS (NM_031213)	-11	NM_031213	81926	Hs.465542	NM_031213	HPRD:07475	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A	protein-coding
19-PTNLD28-TUMOR_peak_6323	chr1	145524831	145524953	+	6.14152	NA	promoter-TSS (NM_003637)	promoter-TSS (NM_003637)	-98	NM_003637	8515	Hs.158237	NM_003637	HPRD:04952	ITGA10	PRO827	integrin, alpha 10	protein-coding
19-PTNLD28-TUMOR_peak_17122	chr11	10929829	10930027	+	6.14152	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	50164	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25735	chr12	97858630	97858735	+	6.14152	NA	promoter-TSS (NR_024037)	promoter-TSS (NR_024037)	-117	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_31840	chr14	94856876	94856969	+	6.14152	NA	5' UTR (NM_001127704, exon 1 of 7)	5' UTR (NM_001127704, exon 1 of 7)	107	NM_001127703	5265	Hs.525557	NM_000295	HPRD:02463	SERPINA1	A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1	protein-coding
19-PTNLD28-TUMOR_peak_87689	chr6	44272655	44272743	+	6.14152	NA	intron (NM_020745, intron 11 of 21)	intron (NM_020745, intron 11 of 21)	-7241	NM_182539	202500	Hs.189183	NM_182539		TCTE1	D6S46|FAP155	t-complex-associated-testis-expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_7000	chr1	153651840	153652119	+	6.13955	NA	exon (NM_000906, exon 1 of 22)	exon (NM_000906, exon 1 of 22)	815	NM_000906	4881	Hs.490330	NM_000906	HPRD:00165	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_41381	chr17	38597386	38597474	+	6.13908	NA	Intergenic	Intergenic	-2246	NM_001552	3487	Hs.462998	NM_001552	HPRD:00900	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_87553	chr6	43037880	43037995	+	6.13908	NA	intron (NM_201521, intron 6 of 15)	intron (NM_201521, intron 6 of 15)	-6069	NM_152882	5754	Hs.90572	NM_002821	HPRD:03534	PTK7	CCK-4|CCK4	protein tyrosine kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_47720	chr19	15434437	15434615	+	6.13908	NA	Intergenic	Intergenic	-43264	NM_058243	23476	Hs.187763	NM_014299	HPRD:10574	BRD4	CAP|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_7848	chr1	164629455	164629614	+	6.13908	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	100937	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_5290	chr1	108234302	108234403	+	6.13908	NA	intron (NM_006113, intron 17 of 26)	intron (NM_006113, intron 17 of 26)	-3226	NM_001079874	10451	Hs.267659	NM_006113	HPRD:05706	VAV3	-	vav 3 guanine nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_52655	chr2	47496503	47496596	+	6.13741	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	75664	NR_110207	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA
19-PTNLD28-TUMOR_peak_18992	chr11	62341874	62342053	+	6.13741	NA	promoter-TSS (NM_001404)	promoter-TSS (NM_001404)	-503	NM_001404	1937	Hs.144835	NM_001404	HPRD:11745	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
19-PTNLD28-TUMOR_peak_70727	chr3	129346035	129346145	+	6.13659	NA	Intergenic	CpG	-20508	NM_015103	23129	Hs.301685	NM_015103	HPRD:05046	PLXND1	PLEXD1	plexin D1	protein-coding
19-PTNLD28-TUMOR_peak_55404	chr2	121669906	121670004	+	6.13659	NA	intron (NM_005270, intron 1 of 12)	intron (NM_005270, intron 1 of 12)	115088	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_6748	chr1	151168915	151169082	+	6.13576	NA	Intergenic	Intergenic	-2023	NM_003557	8394	Hs.655131	NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase, type I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_12340	chr10	22291559	22291667	+	6.13486	NA	intron (NM_022365, intron 1 of 11)	intron (NM_022365, intron 1 of 11)	1037	NM_022365	64215	Hs.499000	NM_022365	HPRD:09922	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ (Hsp40) homolog, subfamily C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_33213	chr15	41136547	41136715	+	6.13486	NA	promoter-TSS (NM_001032367)	promoter-TSS (NM_001032367)	-12	NM_001032367	6692	Hs.233950	NM_003710	HPRD:05494	SPINT1	HAI|HAI1|MANSC2	serine peptidase inhibitor, Kunitz type 1	protein-coding
19-PTNLD28-TUMOR_peak_107119	chrUn_gl000221	42984	43075	+	6.13486	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_96175	chr7	148685126	148685304	+	6.13360	NA	Intergenic	Intergenic	40567	NM_004911	9601	Hs.93659	NM_004911	HPRD:06501	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_59684	chr20	6035409	6035525	+	6.13360	NA	promoter-TSS (NM_152611)	promoter-TSS (NM_152611)	-741	NM_152611	164312	Hs.149133	NM_152611	HPRD:12784	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
19-PTNLD28-TUMOR_peak_47751	chr19	15783721	15783831	+	6.13351	NA	promoter-TSS (NM_023944)	promoter-TSS (NM_023944)	-52	NR_117085	66002	Hs.131459	NM_023944	HPRD:07102	CYP4F12	CYPIVF12|F22329_1	cytochrome P450, family 4, subfamily F, polypeptide 12	protein-coding
19-PTNLD28-TUMOR_peak_53889	chr2	86564451	86564540	+	6.13351	NA	intron (NM_001164730, intron 1 of 6)	CpG	282	NM_022912	65055	Hs.368884	NM_022912	HPRD:07810	REEP1	C2orf23|HMN5B|SPG31	receptor accessory protein 1	protein-coding
19-PTNLD28-TUMOR_peak_84379	chr5	177531757	177531845	+	6.13351	NA	Intergenic	Intergenic	-8755	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_65425	chr22	37957907	37958017	+	6.13337	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	1491	NM_152243	11135	Hs.225356	NM_152243	HPRD:07303	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding
19-PTNLD28-TUMOR_peak_83476	chr5	156948583	156948678	+	6.13337	NA	intron (NM_033274, intron 5 of 22)	intron (NM_033274, intron 5 of 22)	54201	NM_033274	8728	Hs.483944	NM_023038	HPRD:04704	ADAM19	MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
19-PTNLD28-TUMOR_peak_102363	chr9	19102621	19102724	+	6.13337	NA	5' UTR (NM_001270890, exon 1 of 17)	5' UTR (NM_001270890, exon 1 of 17)	268	NM_017645	54801	Hs.533468	NM_017645	HPRD:13302	HAUS6	Dgt6|FAM29A	HAUS augmin-like complex, subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_33294	chr15	42448826	42448956	+	6.12591	NA	promoter-TSS (NR_033151)	promoter-TSS (NR_033151)	-52	NR_033151	255189	Hs.231873	NM_213600	HPRD:17326	PLA2G4F	PLA2G4FZ	phospholipase A2, group IVF	protein-coding
19-PTNLD28-TUMOR_peak_1494	chr1	24165698	24165789	+	6.12591	NA	Intergenic	AluY|SINE|Alu	-13794	NM_001166059	3155	Hs.533444	NM_000191	HPRD:02003	HMGCL	HL	3-hydroxymethyl-3-methylglutaryl-CoA lyase	protein-coding
19-PTNLD28-TUMOR_peak_105736	chr9	120404878	120404996	+	6.12591	NA	Intergenic	LTR12C|LTR|ERV1	-5947	NR_109806	101928797	Hs.382317	NR_109806	ENSG00000233569	LOC101928797	-	uncharacterized LOC101928797	ncRNA
19-PTNLD28-TUMOR_peak_71093	chr3	136505752	136505852	+	6.12591	NA	Intergenic	Intergenic	-32059	NM_001097599	80723	Hs.477692	NM_025246	HPRD:15532	SLC35G2	TMEM22	solute carrier family 35, member G2	protein-coding
19-PTNLD28-TUMOR_peak_55820	chr2	133182135	133182258	+	6.12591	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	8049	NM_001508	2863	Hs.432395	NM_001508	HPRD:04198	GPR39	-	G protein-coupled receptor 39	protein-coding
19-PTNLD28-TUMOR_peak_105571	chr9	116978512	116978600	+	6.12591	NA	intron (NM_032888, intron 12 of 60)	intron (NM_032888, intron 12 of 60)	6842	NR_030255	619556		NR_030255		MIR455	MIRN455|hsa-mir-455	microRNA 455	ncRNA
19-PTNLD28-TUMOR_peak_8146	chr1	171196063	171196161	+	6.12591	NA	Intergenic	Intergenic	-21498	NM_002021	2326	Hs.1424	NM_002021	HPRD:00631	FMO1	-	flavin containing monooxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_77744	chr4	155837483	155837595	+	6.12591	NA	Intergenic	Intergenic	134882	NM_001277173	166863	Hs.133095	NM_144979	HPRD:14517	RBM46	CT68	RNA binding motif protein 46	protein-coding
19-PTNLD28-TUMOR_peak_93572	chr7	77287207	77287326	+	6.12591	NA	Intergenic	Intergenic	-38477	NM_198467	222194	Hs.72451	NM_198467		RSBN1L	-	round spermatid basic protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_100117	chr8	111848283	111848488	+	6.12591	NA	Intergenic	L1M3d|LINE|L1	191277	NR_125417	101927459	Hs.575543	NR_125416		LOC101927459	-	uncharacterized LOC101927459	ncRNA
19-PTNLD28-TUMOR_peak_6681	chr1	150382553	150382665	+	6.12591	NA	intron (NM_001297674, intron 1 of 9)	L2a|LINE|L2	46022	NM_001297674	23248	Hs.213666	NM_015203	ENSG00000163125	RPRD2	KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_100566	chr8	124878013	124878102	+	6.12591	NA	intron (NM_001039112, intron 1 of 40)	L1PA2|LINE|L1	13830	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_53994	chr2	88509198	88509319	+	6.12591	NA	Intergenic	Intergenic	36600	NM_018271	55258	Hs.739080	NM_018271	HPRD:07715	THNSL2	SOFAT|THS2|TSH2	threonine synthase-like 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_51723	chr2	27366256	27366531	+	6.12591	NA	Intergenic	LTR47B|LTR|ERVL	-4061	NM_178553	339779	Hs.136555	NM_178553	HPRD:14633	PRR30	C2orf53	proline rich 30	protein-coding
19-PTNLD28-TUMOR_peak_66137	chr22	51038689	51038789	+	6.12591	NA	promoter-TSS (NM_012324)	promoter-TSS (NM_012324)	-375	NM_012324	23542	Hs.558180	NM_012324	HPRD:09674	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_54628	chr2	103496047	103496140	+	6.12591	NA	Intergenic	L1PA3|LINE|L1	117603	NM_144632	130827	Hs.436203	NM_144632	HPRD:08698	TMEM182	-	transmembrane protein 182	protein-coding
19-PTNLD28-TUMOR_peak_22482	chr12	2622543	2622902	+	6.12591	NA	intron (NM_001129832, intron 9 of 47)	intron (NM_001129832, intron 9 of 47)	158664	NR_046579	100874235	Hs.667644	NR_046579		CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_77416	chr4	145869366	145869484	+	6.12591	NA	Intergenic	Intergenic	-149731	NM_002940	6059	Hs.12013	NM_002940	HPRD:03132	ABCE1	ABC38|OABP|RLI|RNASEL1|RNASELI|RNS4I	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding
19-PTNLD28-TUMOR_peak_36897	chr16	24264635	24264823	+	6.12591	NA	Intergenic	Intergenic	-2145	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_39846	chr17	4830225	4830414	+	6.12591	NA	Intergenic	LTR8|LTR|ERV1	-5273	NM_000173	2811	Hs.1472	NM_000173	HPRD:01976	GP1BA	BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|VWDP	glycoprotein Ib (platelet), alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_75826	chr4	78124821	78124985	+	6.12591	NA	Intergenic	Intergenic	46546	NM_004354	901	Hs.740456	NM_004354	HPRD:04438	CCNG2	-	cyclin G2	protein-coding
19-PTNLD28-TUMOR_peak_65777	chr22	43166123	43166246	+	6.12591	NA	Intergenic	CpG	-49308	NM_017436	53947	Hs.105956	NM_017436	HPRD:06390	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_13651	chr10	53654953	53655282	+	6.12591	NA	intron (NM_006258, intron 4 of 17)	MER115|DNA|hAT-Tip100	-195762	NM_015235	23283	Hs.591358	NM_015235	HPRD:09900	CSTF2T	CstF-64T	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	protein-coding
19-PTNLD28-TUMOR_peak_75939	chr4	81782100	81782188	+	6.12591	NA	intron (NM_001206997, intron 4 of 6)	L1PA3|LINE|L1	-169975	NM_001201	651	Hs.387411	NM_001201	HPRD:00208	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
19-PTNLD28-TUMOR_peak_73661	chr3	197266765	197266934	+	6.12591	NA	intron (NM_004051, intron 2 of 6)	LTR8|LTR|ERV1	16009	NM_203314	622	Hs.274539	NM_004051	HPRD:04344	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
19-PTNLD28-TUMOR_peak_52860	chr2	55843937	55844262	+	6.12430	NA	intron (NM_001282850, intron 1 of 15)	intron (NM_001282850, intron 1 of 15)	761	NM_001122964	57223	Hs.516182	NM_020463	HPRD:13854	SMEK2	FLFL2|PP4R3B|PSY2|smk1	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding
19-PTNLD28-TUMOR_peak_36441	chr16	14796153	14796250	+	6.12348	NA	Intergenic	AluY|SINE|Alu	-7675	NM_003561	8399	Hs.567366	NM_003561	HPRD:04674	PLA2G10	GXPLA2|GXSPLA2|SPLA2	phospholipase A2, group X	protein-coding
19-PTNLD28-TUMOR_peak_87781	chr6	45984111	45984233	+	6.12342	NA	promoter-TSS (NM_016929)	promoter-TSS (NM_016929)	-546	NM_016929	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_56811	chr2	168366656	168366774	+	6.12342	NA	Intergenic	LTR80B|LTR|ERVL	-308467	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_64107	chr21	47553551	47553728	+	6.12342	NA	TTS (NM_001849)	TTS (NM_001849)	21842	NM_006657	10841	Hs.415846	NM_006657	HPRD:08430	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
19-PTNLD28-TUMOR_peak_90948	chr7	2797074	2797211	+	6.12342	NA	intron (NM_007353, intron 2 of 3)	MLT1E1A|LTR|ERVL-MaLR	5632	NM_001282440	2768	Hs.487341	NM_007353	HPRD:05093	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
19-PTNLD28-TUMOR_peak_14748	chr10	88713968	88714285	+	6.12342	NA	intron (NM_024756, intron 1 of 6)	intron (NM_024756, intron 1 of 6)	3299	NM_024756	79812	Hs.524479	NM_024756	HPRD:10601	MMRN2	EMILIN-3|EMILIN3|ENDOGLYX-1	multimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_17008	chr11	8933239	8933346	+	6.12342	NA	promoter-TSS (NM_005418)	promoter-TSS (NM_005418)	553	NR_045417	56672	Hs.131180	NM_020642	HPRD:12380	AKIP1	BCA3|C11orf17	A kinase (PRKA) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58206	chr2	213573234	213573357	+	6.12342	NA	Intergenic	Intergenic	-169943	NM_005235	2066	Hs.390729	NM_005235	HPRD:02767	ERBB4	ALS19|HER4|p180erbB4	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_62985	chr21	27542351	27542480	+	6.12342	NA	intron (NM_001136131, intron 1 of 15)	CpG	723	NM_000484	351	Hs.434980	NM_000484	HPRD:00100	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta (A4) precursor protein	protein-coding
19-PTNLD28-TUMOR_peak_11567	chr1	249167205	249167532	+	6.12342	NA	Intergenic	Intergenic	-14053	NM_001193328	55657	Hs.377705	NM_017865	HPRD:07922	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
19-PTNLD28-TUMOR_peak_43795	chr17	76961745	76962002	+	6.11959	NA	Intergenic	Intergenic	14188	NM_005567	3959	Hs.514535	NM_005567	HPRD:02796	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_50014	chr19	51446457	51446624	+	6.11959	NA	TTS (NM_012427)	TTS (NM_012427)	9804	NM_012427	25818	Hs.50915	NM_012427	HPRD:05732	KLK5	KLK-L2|KLKL2|SCTE	kallikrein-related peptidase 5	protein-coding
19-PTNLD28-TUMOR_peak_27262	chr12	132568782	132568877	+	6.11959	NA	promoter-TSS (NR_003290)	promoter-TSS (NR_003290)	1	NR_003290	347918	Hs.122115	NM_182613	HPRD:13413	EP400NL	-	EP400 N-terminal like	pseudo
19-PTNLD28-TUMOR_peak_68016	chr3	48156430	48156542	+	6.11959	NA	Intergenic	LTR10C|LTR|ERV1	-25717	NM_001134364	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_48986	chr19	39684482	39684670	+	6.11959	NA	Intergenic	Intergenic	-3028	NM_001001414	342897	Hs.726934	NM_001001414	HPRD:17357	NCCRP1	FBXO50|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding
19-PTNLD28-TUMOR_peak_102603	chr9	30198016	30198292	+	6.11959	NA	Intergenic	LTR18B|LTR|ERVL	210298	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_68244	chr3	50639068	50639229	+	6.11859	NA	Intergenic	Intergenic	10114	NM_013324	1154	Hs.655334	NM_013324	HPRD:03897	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2-containing protein	protein-coding
19-PTNLD28-TUMOR_peak_48844	chr19	38397021	38397243	+	6.11859	NA	promoter-TSS (NM_015073)	promoter-TSS (NM_015073)	214	NM_031951	83889	Hs.664194	NM_031951	ENSG00000171804	WDR87	NYD-SP11	WD repeat domain 87	protein-coding
19-PTNLD28-TUMOR_peak_38538	chr16	70322031	70322165	+	6.11745	NA	intron (NM_001605, intron 1 of 20)	AluY|SINE|Alu	1314	NM_001605	16	Hs.315137	NM_001605	HPRD:03042	AARS	CMT2N	alanyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_65337	chr22	36767328	36767449	+	6.11745	NA	intron (NM_002473, intron 1 of 40)	MLT1B|LTR|ERVL-MaLR	16675	NM_002473	4627	Hs.474751	NM_002473	HPRD:01177	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin, heavy chain 9, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_98818	chr8	55372462	55372584	+	6.11409	NA	exon (NM_022454, exon 2 of 2)	exon (NM_022454, exon 2 of 2)	2028	NM_022454	64321	Hs.98367	NM_022454	HPRD:18085	SOX17	VUR3	SRY (sex determining region Y)-box 17	protein-coding
19-PTNLD28-TUMOR_peak_101648	chr8	144698491	144698612	+	6.11409	NA	intron (NM_003313, intron 2 of 10)	intron (NM_003313, intron 2 of 10)	1181	NM_003313	7264	Hs.404119	NM_003313	HPRD:00654	TSTA3	FX|P35B|SDR4E1	tissue specific transplantation antigen P35B	protein-coding
19-PTNLD28-TUMOR_peak_39275	chr16	87525513	87525632	+	6.11277	NA	promoter-TSS (NM_015144)	promoter-TSS (NM_015144)	-112	NM_015144	23174	Hs.156231	NM_015144	HPRD:18316	ZCCHC14	BDG-29|BDG29	zinc finger, CCHC domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_65228	chr22	33506586	33507111	+	6.11277	NA	Intergenic	Intergenic	-52471	NM_001135774	8224	Hs.608750	NM_003490	HPRD:04083	SYN3	-	synapsin III	protein-coding
19-PTNLD28-TUMOR_peak_26387	chr12	113342415	113342553	+	6.11277	NA	Intergenic	Intergenic	-2255	NM_016816	4938	Hs.524760	NM_002534	HPRD:08879	OAS1	IFI-4|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1, 40/46kDa	protein-coding
19-PTNLD28-TUMOR_peak_51987	chr2	31204531	31204731	+	6.11277	NA	intron (NM_001253826, intron 3 of 15)	intron (NM_001253826, intron 3 of 15)	147875	NM_001253827	79623	Hs.468058	NM_024572	HPRD:12194	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
19-PTNLD28-TUMOR_peak_35684	chr16	1024290	1024391	+	6.11277	NA	intron (NR_033645, intron 1 of 11)	intron (NR_033645, intron 1 of 11)	-3356	NM_022773	64788	Hs.71912	NM_022773	HPRD:07789	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
19-PTNLD28-TUMOR_peak_8541	chr1	179923422	179923522	+	6.10876	NA	promoter-TSS (NM_014810)	promoter-TSS (NM_014810)	-436	NM_014810	9857	Hs.413045	NM_014810	HPRD:09870	CEP350	CAP350|GM133	centrosomal protein 350kDa	protein-coding
19-PTNLD28-TUMOR_peak_63770	chr21	43934694	43934806	+	6.10876	NA	intron (NM_018964, intron 2 of 20)	CpG	15008	NM_018964	54020	Hs.547009	NM_018964	HPRD:10479	SLC37A1	G3PP	solute carrier family 37 (glucose-6-phosphate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_64016	chr21	46495096	46495240	+	6.10876	NA	intron (NR_027673, intron 1 of 12)	CpG	675	NM_015834	104	Hs.474018	NM_001112	HPRD:06777	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA-specific, B1	protein-coding
19-PTNLD28-TUMOR_peak_6530	chr1	148193221	148193321	+	6.10876	NA	intron (NR_102404, intron 6 of 18).2	GC_rich|Low_complexity|Low_complexity	9265	NM_001144032	730262		NM_001144032		PPIAL4E	COAS2	peptidylprolyl isomerase A (cyclophilin A)-like 4E	protein-coding
19-PTNLD28-TUMOR_peak_7389	chr1	157107784	157107905	+	6.10876	NA	intron (NM_005240, intron 1 of 3)	CpG	333	NM_005240	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_101856	chr9	52708	53021	+	6.10797	NA	Intergenic	Intergenic	-17000	NR_026822	654835	Hs.569137	NR_026822	ENSG00000218839	FAM138C	F379	family with sequence similarity 138, member C	ncRNA
19-PTNLD28-TUMOR_peak_41042	chr17	32586257	32586444	+	6.10797	NA	Intergenic	Intergenic	4054	NM_002982	6347	Hs.303649	NM_002982	HPRD:01149	CCL2	GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF	chemokine (C-C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_16272	chr10	131265151	131265252	+	6.10797	NA	promoter-TSS (NM_002412)	promoter-TSS (NM_002412)	-253	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_16830	chr11	5499173	5499330	+	6.10797	NA	intron (NR_038321, intron 1 of 4)	L1HS|LINE|L1	-10664	NM_001005163	390066	Hs.553734	NM_001005163	HPRD:15008	OR52D1	OR11-43	olfactory receptor, family 52, subfamily D, member 1	protein-coding
19-PTNLD28-TUMOR_peak_69021	chr3	72429932	72430101	+	6.10797	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	65758	NM_012234	23429	Hs.7910	NM_012234		RYBP	AAP1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_38027	chr16	57318324	57318422	+	6.10797	NA	exon (NM_015993, exon 1 of 4)	exon (NM_015993, exon 1 of 4)	211	NM_015993	51090	Hs.632215	NM_015993	HPRD:11854	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
19-PTNLD28-TUMOR_peak_95625	chr7	137016223	137016396	+	6.10797	NA	intron (NM_002825, intron 1 of 4)	intron (NM_002825, intron 1 of 4)	12237	NM_002825	5764	Hs.371249	NM_002825	HPRD:01199	PTN	HARP|HBGF8|HBNF|NEGF1	pleiotrophin	protein-coding
19-PTNLD28-TUMOR_peak_32352	chr14	105864785	105864997	+	6.10797	NA	promoter-TSS (NM_001195082)	promoter-TSS (NM_001195082)	-29	NM_001195082	647310	Hs.729499	NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
19-PTNLD28-TUMOR_peak_85627	chr6	16037074	16037221	+	6.10797	NA	Intergenic	Intergenic	-92170	NM_013262	29116	Hs.484738	NM_013262	HPRD:17621	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_46519	chr19	860620	860716	+	6.10797	NA	exon (NM_001928, exon 2 of 5)	exon (NM_001928, exon 2 of 5)	1003	NM_001928	1675	Hs.155597	NM_001928		CFD	ADIPSIN|ADN|DF|PFD	complement factor D (adipsin)	protein-coding
19-PTNLD28-TUMOR_peak_27600	chr13	28712236	28712345	+	6.10797	NA	promoter-TSS (NM_175854)	promoter-TSS (NM_175854)	-353	NM_175854	255967	Hs.645015	NM_175854	HPRD:17818	PAN3	-	PAN3 poly(A) specific ribonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_48527	chr19	33502789	33503068	+	6.10797	NA	intron (NM_033103, intron 5 of 14)	intron (NM_033103, intron 5 of 14)	39805	NM_001300978	91442	Hs.579899	NM_152266		C19orf40	FAAP24	chromosome 19 open reading frame 40	protein-coding
19-PTNLD28-TUMOR_peak_97779	chr8	26372686	26372774	+	6.10591	NA	intron (NM_001197293, intron 1 of 13)	CpG	1021	NM_001197293	1808	Hs.593187	NM_001386	HPRD:03914	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_101434	chr8	142045595	142045712	+	6.10591	NA	Intergenic	Intergenic	-34241	NM_001199649	5747	Hs.395482	NM_005607	HPRD:02859	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_90557	chr6	168196909	168197159	+	6.10591	NA	intron (NR_026773, intron 1 of 3)	intron (NR_026773, intron 1 of 3)	505	NR_026773	26238	Hs.520583	NM_014356	HPRD:12846	C6orf123	HGC6.2|dJ431P23.4	chromosome 6 open reading frame 123	ncRNA
19-PTNLD28-TUMOR_peak_105919	chr9	124658490	124658721	+	6.10591	NA	intron (NM_001139442, intron 6 of 8)	intron (NM_001139442, intron 6 of 8)	153541	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_52926	chr2	59882952	59883113	+	6.10591	NA	Intergenic	Intergenic	438189	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LOC101927285	-	uncharacterized LOC101927285	ncRNA
19-PTNLD28-TUMOR_peak_96575	chr7	154120327	154120550	+	6.10591	NA	intron (NM_001290252, intron 1 of 23)	MER67A|LTR|ERV1	118141	NM_001290252	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_98756	chr8	53853798	53853941	+	6.10591	NA	TTS (NM_005285)	TTS (NM_005285)	1401	NM_005285	2831	Hs.248117	NM_005285		NPBWR1	GPR7	neuropeptides B/W receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_60552	chr20	31773849	31773980	+	6.10591	NA	Intergenic	SVA_D|Other|Other	-7497	NR_026760	317716	Hs.434194	NM_173859	HPRD:06359	BPIFA4P	BASE	BPI fold containing family A, member 4, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_8240	chr1	172881138	172881267	+	6.10591	NA	Intergenic	AluJb|SINE|Alu	138901	NM_005092	8995	Hs.248197	NM_005092		TNFSF18	AITRL|GITRL|TL6|hGITRL	tumor necrosis factor (ligand) superfamily, member 18	protein-coding
19-PTNLD28-TUMOR_peak_25513	chr12	88693471	88693566	+	6.10591	NA	Intergenic	Intergenic	157445	NM_181783	160418	Hs.331268	NM_181783	HPRD:10243	TMTC3	SMILE	transmembrane and tetratricopeptide repeat containing 3	protein-coding
19-PTNLD28-TUMOR_peak_69142	chr3	75587515	75587791	+	6.10591	NA	Intergenic	LTR5A|LTR|ERVK	-92261	NR_031714	100302212		NR_031714	miRBase:MI0006657	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
19-PTNLD28-TUMOR_peak_6634	chr1	149857225	149857372	+	6.10253	NA	3' UTR (NM_003528, exon 1 of 1)	3' UTR (NM_003528, exon 1 of 1)	934	NM_003528	8349	Hs.2178	NM_003528	HPRD:03494	HIST2H2BE	GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ	histone cluster 2, H2be	protein-coding
19-PTNLD28-TUMOR_peak_41780	chr17	43210688	43210780	+	6.10217	NA	promoter-TSS (NM_133373)	promoter-TSS (NM_133373)	767	NM_001135704	79777	Hs.110298	NM_024722	ENSG00000181513	ACBD4	-	acyl-CoA binding domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_1124	chr1	17092253	17092418	+	6.10103	NA	Intergenic	Intergenic	-1360	NM_001271733	11223	Hs.349110	NM_001271733		MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1-like	protein-coding
19-PTNLD28-TUMOR_peak_48874	chr19	38738499	38738721	+	6.10103	NA	Intergenic	Intergenic	8621	NM_033256	94274	Hs.631569	NM_033256	HPRD:16291	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding
19-PTNLD28-TUMOR_peak_6018	chr1	120666510	120666651	+	6.10103	NA	Intergenic	HAL1|LINE|L1	-54263	NM_024408	4853	Hs.487360	NM_024408	HPRD:02606	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding
19-PTNLD28-TUMOR_peak_24406	chr12	53261523	53261662	+	6.10103	NA	Intergenic	Intergenic	-18814	NM_173352	196374	Hs.665267	NM_173352	HPRD:17171	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
19-PTNLD28-TUMOR_peak_35495	chr15	101142977	101143106	+	6.10103	NA	promoter-TSS (NM_001040616)	promoter-TSS (NM_001040616)	286	NM_198243	140460	Hs.31845	NM_024708	HPRD:10674	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
19-PTNLD28-TUMOR_peak_2101	chr1	32480384	32480505	+	6.09993	NA	intron (NM_001271878, intron 1 of 7)	CpG	1149	NR_073498	10657	Hs.445893	NM_006559	HPRD:03926	KHDRBS1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding
19-PTNLD28-TUMOR_peak_15112	chr10	99332884	99332997	+	6.09975	NA	intron (NM_001291219, intron 1 of 7)	intron (NM_001291219, intron 1 of 7)	742	NM_020349	26287	Hs.73708	NM_020349	HPRD:12460	ANKRD2	ARPP	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding
19-PTNLD28-TUMOR_peak_37401	chr16	32252503	32252603	+	6.09975	NA	Intergenic	Intergenic	-12092	NM_001243722	729264	Hs.513537	NM_001243722		TP53TG3D	TP53TG3|TP53TG3B|TP53TG3C	TP53 target 3D	protein-coding
19-PTNLD28-TUMOR_peak_21457	chr11	117685642	117685800	+	6.09975	NA	Intergenic	Intergenic	9738	NM_001680	486	Hs.731865	NM_001680	HPRD:03487	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_103017	chr9	37944063	37944212	+	6.09826	NA	intron (NM_003028, intron 5 of 5)	intron (NM_003028, intron 5 of 5)	-39787	NR_024873	92014	Hs.634120	NM_033412	HPRD:14370	SLC25A51	CG7943|MCART1	solute carrier family 25, member 51	protein-coding
19-PTNLD28-TUMOR_peak_103482	chr9	67302601	67302689	+	6.09826	NA	Intergenic	Intergenic	-13153	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_54281	chr2	96932205	96932315	+	6.09347	NA	promoter-TSS (NM_001193304)	promoter-TSS (NM_001193304)	376	NM_004804	9391	Hs.12109	NM_004804		CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
19-PTNLD28-TUMOR_peak_26410	chr12	113627235	113627405	+	6.09347	NA	intron (NM_001286215, intron 2 of 2)	intron (NM_001286215, intron 2 of 2)	3989	NM_032848	84934	Hs.524762	NM_032848	HPRD:08606	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
19-PTNLD28-TUMOR_peak_47592	chr19	14172196	14172324	+	6.09234	NA	Intergenic	Intergenic	-2289	NM_001145028	342979	Hs.444298	NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
19-PTNLD28-TUMOR_peak_103102	chr9	39411101	39411221	+	6.09234	NA	Intergenic	Intergenic	40099	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_57668	chr2	198573183	198573271	+	6.09234	NA	TTS (NM_138395)	TTS (NM_138395)	3199	NM_138395	92935	Hs.744330	NM_138395	HPRD:14363	MARS2	MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_14756	chr10	88853986	88854234	+	6.09234	NA	promoter-TSS (NM_019054)	promoter-TSS (NM_019054)	666	NM_005271	2746	Hs.500409	NM_005271	HPRD:11748	GLUD1	GDH|GDH1|GLUD	glutamate dehydrogenase 1	protein-coding
19-PTNLD28-TUMOR_peak_105496	chr9	115838473	115838597	+	6.09225	NA	Intergenic	CpG	-19464	NM_001282515	7539	Hs.150406	NM_003408	HPRD:04258	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_38218	chr16	66400441	66400605	+	6.09211	NA	promoter-TSS (NM_001795)	promoter-TSS (NM_001795)	-2	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_7631	chr1	160921240	160921412	+	6.09211	NA	intron (NM_080878, intron 3 of 7)	LTR40b|LTR|ERVL	3263	NM_080878	142683	Hs.385631	NM_080878	HPRD:17166	ITLN2	HL-2|HL2	intelectin 2	protein-coding
19-PTNLD28-TUMOR_peak_61387	chr20	44651377	44651470	+	6.09211	NA	intron (NM_001134771, intron 1 of 25)	intron (NM_001134771, intron 1 of 25)	1094	NM_001134771	57468	Hs.21413	NM_020708	HPRD:09469	SLC12A5	KCC2	solute carrier family 12 (potassium/chloride transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_106481	chr9	134272741	134272829	+	6.09211	NA	Intergenic	Intergenic	-32692	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline-rich coiled-coil 2B	protein-coding
19-PTNLD28-TUMOR_peak_57196	chr2	178574267	178574467	+	6.09211	NA	intron (NM_001077197, intron 14 of 20)	L2c|LINE|L2	-90673	NM_152275	92104	Hs.128384	NM_152275		TTC30A	-	tetratricopeptide repeat domain 30A	protein-coding
19-PTNLD28-TUMOR_peak_47038	chr19	8316043	8316300	+	6.09211	NA	intron (NM_024552, intron 3 of 11)	intron (NM_024552, intron 3 of 11)	41954	NM_024552	79603	Hs.515111	NM_024552	HPRD:13962	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
19-PTNLD28-TUMOR_peak_101695	chr8	145018090	145018225	+	6.08816	NA	promoter-TSS (NM_201382)	promoter-TSS (NM_201382)	-31	NM_201382	5339	Hs.434248	NM_000445	HPRD:03180	PLEC	EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
19-PTNLD28-TUMOR_peak_9301	chr1	202077043	202077159	+	6.08704	NA	Intergenic	Intergenic	-14928	NM_004767	9283	Hs.132049	NM_004767		GPR37L1	ET(B)R-LP-2|ETBR-LP-2	G protein-coupled receptor 37 like 1	protein-coding
19-PTNLD28-TUMOR_peak_2012	chr1	31511924	31512134	+	6.08407	NA	intron (NM_001020658, intron 2 of 21)	AluJb|SINE|Alu	26535	NM_001020658	9698	Hs.281707	NM_014676	HPRD:06230	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio RNA-binding family member 1	protein-coding
19-PTNLD28-TUMOR_peak_106803	chr9	139923923	139924020	+	6.08407	NA	promoter-TSS (NM_212533)	promoter-TSS (NM_212533)	-597	NM_212533	20	Hs.421202	NM_001606	HPRD:08967	ABCA2	ABC2	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding
19-PTNLD28-TUMOR_peak_50641	chr1_gl000191_random	101945	102041	+	6.08407	NA	Intergenic	SVA_D|Other|Other	-51712	NM_054016	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_24205	chr12	50926715	50926846	+	6.08407	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	28012	NM_173602	57609	Hs.505516	NM_020849	HPRD:08751	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78525	chr4	190970758	190971120	+	6.08407	NA	Intergenic	Intergenic	-14718	NR_121644	100419743		NR_121644		DBET	DBE-T	D4Z4 binding element transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_105921	chr9	124712937	124713025	+	6.08404	NA	intron (NM_001139442, intron 6 of 8)	intron (NM_001139442, intron 6 of 8)	142904	NM_001139442	158135	Hs.438937	NM_194252	HPRD:10047	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase-like family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_55476	chr2	122968907	122969006	+	6.08404	NA	Intergenic	Intergenic	455835	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_10362	chr1	224358587	224358675	+	6.08404	NA	Intergenic	AluSq2|SINE|Alu	-12279	NM_003676	8560	Hs.299878	NM_003676	HPRD:13133	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|MLD	delta(4)-desaturase, sphingolipid 1	protein-coding
19-PTNLD28-TUMOR_peak_38960	chr16	81314165	81314326	+	6.08404	NA	intron (NM_017429, intron 7 of 10)	MIRc|SINE|MIR	-34326	NM_022041	8139	Hs.112569	NM_022041		GAN	GAN1|KLHL16	gigaxonin	protein-coding
19-PTNLD28-TUMOR_peak_88451	chr6	79924998	79925137	+	6.08404	NA	intron (NM_138730, intron 1 of 5)	intron (NM_138730, intron 1 of 5)	-18324	NR_040671	100288198	Hs.586270	NR_040671	ENSG00000270362	HMGN3-AS1	-	HMGN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54414	chr2	99218141	99218262	+	6.08404	NA	intron (NM_001008215, intron 2 of 2)	MER1B|DNA|hAT-Charlie	6780	NM_001008215	493753	Hs.596537	NM_001008215	HPRD:17563	COA5	6330578E17Rik|C2orf64|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
19-PTNLD28-TUMOR_peak_85338	chr6	11279583	11279710	+	6.08404	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-46731	NM_001271033	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_24260	chr12	52115403	52115751	+	6.08404	NA	exon (NM_001177984, exon 12 of 26)	exon (NM_001177984, exon 12 of 26)	110124	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_17615	chr11	20057287	20057483	+	6.08404	NA	intron (NM_001111019, intron 2 of 27)	intron (NM_001111019, intron 2 of 27)	13283	NM_001111019	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_40774	chr17	26732768	26732860	+	6.08404	NA	intron (NM_080669, intron 1 of 5)	CpG	416	NM_080669	113235	Hs.446689	NM_080669	HPRD:14715	SLC46A1	G21|HCP1|PCFT	solute carrier family 46 (folate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_82164	chr5	132706357	132706475	+	6.08404	NA	intron (NM_015082, intron 4 of 15)	intron (NM_015082, intron 4 of 15)	56982	NR_031621	100302134		NR_031621		MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
19-PTNLD28-TUMOR_peak_33777	chr15	59576302	59576464	+	6.08404	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	77368	NM_033195	92483	Hs.307052	NM_033195	HPRD:13981	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A-like 6B	protein-coding
19-PTNLD28-TUMOR_peak_60898	chr20	36298827	36299210	+	6.08404	NA	Intergenic	Intergenic	-6294	NR_040021	100287792	Hs.517026	NM_001001690	ENSG00000204117	LOC100287792	-	uncharacterized LOC100287792	ncRNA
19-PTNLD28-TUMOR_peak_68689	chr3	62095326	62095570	+	6.08404	NA	intron (NM_002841, intron 5 of 29)	intron (NM_002841, intron 5 of 29)	209174	NR_038281	100506994	Hs.656620	NR_038281	ENSG00000241472	PTPRG-AS1	-	PTPRG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39773	chr17	3868458	3868600	+	6.08404	NA	promoter-TSS (NM_005173)	promoter-TSS (NM_005173)	-771	NM_174954	489	Hs.513870	NM_005173	HPRD:03568	ATP2A3	SERCA3	ATPase, Ca++ transporting, ubiquitous	protein-coding
19-PTNLD28-TUMOR_peak_103976	chr9	79474924	79475041	+	6.08404	NA	intron (NM_015225, intron 1 of 18)	LTR8A|LTR|ERV1	46021	NM_015225	158471	Hs.262857	NM_015225	HPRD:12970	PRUNE2	A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3	prune homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_38731	chr16	75099487	75099594	+	6.08404	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	51130	NM_194436	197257	Hs.380929	NM_153486	HPRD:06318	LDHD	DLD	lactate dehydrogenase D	protein-coding
19-PTNLD28-TUMOR_peak_73118	chr3	189035848	189035987	+	6.08404	NA	intron (NM_198485, intron 5 of 5)	intron (NM_198485, intron 5 of 5)	-77534	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_41156	chr17	35014329	35014485	+	6.08404	NA	Intergenic	CpG	56382	NM_024864	79922	Hs.194864	NM_024864	HPRD:08656	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_57018	chr2	174095872	174096179	+	6.08404	NA	intron (NM_016653, intron 12 of 19)	intron (NM_016653, intron 12 of 19)	50739	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MLK7-AS1	-	MLK7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_41874	chr17	44290432	44290520	+	6.08404	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	12264	NM_001193465	284058	Hs.648744	NM_015443	HPRD:11254	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_80337	chr5	66411243	66411348	+	6.08404	NA	intron (NM_001290226, intron 10 of 26)	intron (NM_001290226, intron 10 of 26)	81322	NM_005582	4064	Hs.87205	NM_005582	HPRD:03749	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
19-PTNLD28-TUMOR_peak_64972	chr22	29319796	29320172	+	6.08404	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	6607	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_100365	chr8	120685503	120685621	+	6.08404	NA	Intergenic	Intergenic	-34456	NM_006209	5168	Hs.190977	NM_006209	HPRD:03037	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
19-PTNLD28-TUMOR_peak_71795	chr3	152760704	152760879	+	6.08404	NA	Intergenic	Intergenic	-119210	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_84699	chr6	1142093	1142523	+	6.08404	NA	Intergenic	Intergenic	-40741	NR_027115	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
19-PTNLD28-TUMOR_peak_19389	chr11	66156333	66156451	+	6.08404	NA	Intergenic	Intergenic	-16445	NM_001300868	3177	Hs.569017	NM_001532	HPRD:03662	SLC29A2	DER12|ENT2|HNP36	solute carrier family 29 (equilibrative nucleoside transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_14496	chr10	79807133	79807355	+	6.08404	NA	intron (NM_001142285, intron 4 of 4)	intron (NM_001142285, intron 4 of 4)	13726	NM_033022	6229	Hs.280130	NM_001026	HPRD:03877	RPS24	DBA3|S24	ribosomal protein S24	protein-coding
19-PTNLD28-TUMOR_peak_106304	chr9	131541816	131541945	+	6.08404	NA	Intergenic	SVA_D|Other|Other	-7606	NM_018201	54662	Hs.3376	NM_018201	HPRD:18163	TBC1D13	-	TBC1 domain family, member 13	protein-coding
19-PTNLD28-TUMOR_peak_89047	chr6	109703524	109703699	+	6.08249	NA	5' UTR (NM_001142401, exon 1 of 5)	5' UTR (NM_001142401, exon 1 of 5)	151	NM_001142402	8763	Hs.520313	NM_006016	HPRD:04523	CD164	MGC-24|MUC-24|endolyn	CD164 molecule, sialomucin	protein-coding
19-PTNLD28-TUMOR_peak_106172	chr9	130331947	130332085	+	6.08192	NA	promoter-TSS (NM_022833)	promoter-TSS (NM_022833)	-620	NM_022833	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_1466	chr1	23881367	23881648	+	6.08192	NA	Intergenic	CpG	4778	NM_002167	3399	Hs.76884	NM_002167	HPRD:02608	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_53425	chr2	71974529	71974682	+	6.08093	NA	Intergenic	Intergenic	280773	NM_001130987	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_42768	chr17	60555778	60556035	+	6.08093	NA	promoter-TSS (NM_001284333)	promoter-TSS (NM_001284333)	-480	NM_006852	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_7836	chr1	164571718	164572188	+	6.07878	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	43356	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_104048	chr9	81869918	81870014	+	6.07878	NA	Intergenic	MIRc|SINE|MIR	-109385	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
19-PTNLD28-TUMOR_peak_955	chr1	15240530	15240621	+	6.07878	NA	intron (NM_201628, intron 1 of 14)	MER5A|DNA|hAT-Charlie	-10050	NM_001018000	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_87022	chr6	35465500	35465604	+	6.07836	NA	promoter-TSS (NM_003214)	promoter-TSS (NM_003214)	-691	NM_003214	7005	Hs.485205	NM_003214	HPRD:04411	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_38086	chr16	57864882	57865121	+	6.07708	NA	Intergenic	Intergenic	20452	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_37886	chr16	54227951	54228175	+	6.07708	NA	Intergenic	Intergenic	92315	NM_024336	79191	Hs.499205	NM_024336	HPRD:17162	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_64011	chr21	46378704	46379026	+	6.07708	NA	intron (NM_058190, intron 2 of 5)	intron (NM_058190, intron 2 of 5)	18910	NM_058190	85395	Hs.410830	NM_058190	HPRD:10765	FAM207A	C21orf70	family with sequence similarity 207, member A	protein-coding
19-PTNLD28-TUMOR_peak_46567	chr19	1215124	1215309	+	6.07708	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	9418	NM_000455	6794	Hs.515005	NM_000455	HPRD:03740	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
19-PTNLD28-TUMOR_peak_27501	chr13	24923463	24923603	+	6.07708	NA	Intergenic	ERVL-B4-int|LTR|ERVL	39817	NM_178540	338872	Hs.362854	NM_178540	HPRD:14659	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
19-PTNLD28-TUMOR_peak_81975	chr5	127214017	127214105	+	6.07708	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	204705	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
19-PTNLD28-TUMOR_peak_109560	chrX	134554871	134555023	+	6.07708	NA	promoter-TSS (NR_024359)	promoter-TSS (NR_024359)	-921	NR_024359	399668	Hs.374414	NM_203306		LINC00086	NCRNA00086	long intergenic non-protein coding RNA 86	ncRNA
19-PTNLD28-TUMOR_peak_31528	chr14	81867251	81867600	+	6.07708	NA	intron (NM_001256430, intron 2 of 7)	MIR3|SINE|MIR	26131	NM_033104	85439	Hs.14248	NM_033104	HPRD:10531	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
19-PTNLD28-TUMOR_peak_87968	chr6	52623215	52623320	+	6.07708	NA	intron (NM_000846, intron 1 of 6)	intron (NM_000846, intron 1 of 6)	5094	NM_000846	2939	Hs.94107	NM_000846	HPRD:00709	GSTA2	GST2|GSTA2-2|GTA2|GTH2	glutathione S-transferase alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_81181	chr5	93575958	93576075	+	6.07708	NA	intron (NM_001145678, intron 20 of 20)	intron (NM_001145678, intron 20 of 20)	-128612	NM_001163418	83989	Hs.600086	NM_032042	HPRD:13210	FAM172A	C5orf21	family with sequence similarity 172, member A	protein-coding
19-PTNLD28-TUMOR_peak_16688	chr11	2912039	2912147	+	6.07211	NA	intron (NM_007105, intron 3 of 3)	intron (NM_007105, intron 3 of 3)	-5098	NM_000076	1028	Hs.106070	NM_000076	HPRD:02913	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin-dependent kinase inhibitor 1C (p57, Kip2)	protein-coding
19-PTNLD28-TUMOR_peak_55839	chr2	133428369	133428594	+	6.07211	NA	promoter-TSS (NM_144586)	promoter-TSS (NM_144586)	0	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38471	chr16	69206850	69207035	+	6.07211	NA	Intergenic	MER41A|LTR|ERV1	-14108	NM_006750	6645	Hs.461117	NM_006750	HPRD:02491	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
19-PTNLD28-TUMOR_peak_55838	chr2	133427557	133427684	+	6.07211	NA	5' UTR (NM_144586, exon 1 of 3)	5' UTR (NM_144586, exon 1 of 3)	861	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_31347	chr14	76026179	76026378	+	6.07036	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-18662	NM_017791	55640	Hs.509966	NM_017791	HPRD:12654	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH	feline leukemia virus subgroup C cellular receptor family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_56991	chr2	173329227	173329357	+	6.07036	NA	intron (NM_001079818, intron 1 of 24)	intron (NM_001079818, intron 1 of 24)	36978	NM_001079818	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_45541	chr18	44880803	44880894	+	6.07036	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-105294	NM_001278063	652991	Hs.585834	NM_001037802	ENSG00000215474	SKOR2	CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_16181	chr10	127511761	127511929	+	6.07036	NA	promoter-TSS (NM_078468)	promoter-TSS (NM_078468)	-8	NM_000375	7390	Hs.501376	NM_000375	HPRD:06087	UROS	UROIIIS	uroporphyrinogen III synthase	protein-coding
19-PTNLD28-TUMOR_peak_14130	chr10	72309758	72309849	+	6.07036	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	52728	NM_001083116	5551	Hs.2200	NM_005041	HPRD:01362	PRF1	FLH2|HPLH2|P1|PFN1|PFP	perforin 1 (pore forming protein)	protein-coding
19-PTNLD28-TUMOR_peak_94198	chr7	98912137	98912417	+	6.07036	NA	Intergenic	Intergenic	-11219	NM_001190996	10552	Hs.124126	NM_006409	HPRD:07252	ARPC1A	Arc40|HEL-68|SOP2Hs|SOP2L	actin related protein 2/3 complex, subunit 1A, 41kDa	protein-coding
19-PTNLD28-TUMOR_peak_16788	chr11	3965534	3965632	+	6.07036	NA	intron (NM_001277962, intron 1 of 12)	intron (NM_001277962, intron 1 of 12)	88291	NR_039835	100616453		NR_039835	miRBase:MI0017319	MIR4687	-	microRNA 4687	ncRNA
19-PTNLD28-TUMOR_peak_34201	chr15	69323994	69324126	+	6.07036	NA	non-coding (NR_033671, exon 5 of 17)	non-coding (NR_033671, exon 5 of 17)	17026	NM_001184779	79400	Hs.657932	NM_024505	HPRD:07359	NOX5	-	NADPH oxidase, EF-hand calcium binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_106155	chr9	129961619	129961707	+	6.07036	NA	intron (NM_014636, intron 14 of 18)	intron (NM_014636, intron 14 of 18)	-64278	NM_001286779	84253	Hs.29304	NM_032293	HPRD:13567	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain-like 3	protein-coding
19-PTNLD28-TUMOR_peak_20330	chr11	79874635	79874723	+	6.07036	NA	Intergenic	Intergenic	599167	NR_120570	101928944	Hs.547927	NR_120570	ENSG00000255178	LOC101928944	-	uncharacterized LOC101928944	ncRNA
19-PTNLD28-TUMOR_peak_106178	chr9	130352242	130352330	+	6.07036	NA	Intergenic	Intergenic	-11000	NM_001035534	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_64398	chr22	19983122	19983272	+	6.07036	NA	intron (NM_001670, intron 2 of 19)	intron (NM_001670, intron 2 of 19)	21112	NM_001670	421	Hs.713616	NM_001670	HPRD:03778	ARVCF	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding
19-PTNLD28-TUMOR_peak_37172	chr16	29859958	29860051	+	6.07036	NA	TTS (NM_001293204)	TTS (NM_001293204)	14605	NM_001286586	10423	Hs.121549	NM_006319	HPRD:12063	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_78711	chr5	2490719	2490809	+	6.07036	NA	Intergenic	Intergenic	-178449	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
19-PTNLD28-TUMOR_peak_47561	chr19	13950530	13950723	+	6.06715	NA	Intergenic	Intergenic	-3153	NR_029495	407010		NR_029495	miRBase:MI0000079	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A	microRNA 23a	ncRNA
19-PTNLD28-TUMOR_peak_90788	chr7	1015090	1015225	+	6.06505	NA	promoter-TSS (NM_001031617)	promoter-TSS (NM_001031617)	78	NM_001031617	90639	Hs.121593	NM_001031617		COX19	-	cytochrome c oxidase assembly homolog 19 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_94792	chr7	107589762	107589917	+	6.06505	NA	intron (NM_002291, intron 24 of 33)	intron (NM_002291, intron 24 of 33)	53965	NM_002291	3912	Hs.650585	NM_002291	HPRD:01029	LAMB1	CLM|LIS5	laminin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_10877	chr1	232519320	232519455	+	6.06487	NA	Intergenic	Intergenic	131856	NM_020808	57568	Hs.745009	NM_020808	HPRD:15346	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
19-PTNLD28-TUMOR_peak_71907	chr3	156365892	156366150	+	6.06487	NA	Intergenic	L1ME1|LINE|L1	-26184	NM_015508	25976	Hs.744050	NM_015508	HPRD:18192	TIPARP	ARTD14|PARP7|pART14	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
19-PTNLD28-TUMOR_peak_32139	chr14	102829836	102830040	+	6.06487	NA	promoter-TSS (NM_032630)	promoter-TSS (NM_032630)	638	NM_014844	9895	Hs.195667	NM_014844	HPRD:17184	TECPR2	KIAA0329|SPG49	tectonin beta-propeller repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_77689	chr4	154217642	154217844	+	6.06487	NA	intron (NM_015271, intron 6 of 11)	intron (NM_015271, intron 6 of 11)	12220	NR_001562	303	Hs.546235	NR_001562		ANXA2P1	ANX2L1|ANX2P1|LPC2A	annexin A2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_73367	chr3	194117872	194118048	+	6.06487	NA	exon (NM_004488, exon 2 of 2)	exon (NM_004488, exon 2 of 2)	2035	NM_004488	2814	Hs.73734	NM_004488	HPRD:01431	GP5	CD42d|GPV	glycoprotein V (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_10322	chr1	223927512	223927681	+	6.06314	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	27477	NM_001748	824	Hs.350899	NM_001748	HPRD:00254	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2, (m/II) large subunit	protein-coding
19-PTNLD28-TUMOR_peak_17304	chr11	13238362	13238459	+	6.06225	NA	Intergenic	Intergenic	-60864	NM_001030273	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_106336	chr9	131938224	131938593	+	6.06032	NA	3' UTR (NM_203434, exon 1 of 1)	3' UTR (NM_203434, exon 1 of 1)	2132	NM_203434	389792	Hs.529857	NM_203434	HPRD:17128	IER5L	bA247A12.2	immediate early response 5-like	protein-coding
19-PTNLD28-TUMOR_peak_16183	chr10	127584427	127584588	+	6.05991	NA	promoter-TSS (NM_145235)	promoter-TSS (NM_145235)	-601	NM_145235	92565	Hs.352591	NM_145235	HPRD:09945	FANK1	-	fibronectin type III and ankyrin repeat domains 1	protein-coding
19-PTNLD28-TUMOR_peak_49607	chr19	47950383	47950502	+	6.05991	NA	intron (NM_015063, intron 4 of 9)	intron (NM_015063, intron 4 of 9)	24865	NM_015063	6543	Hs.172884	NM_015063	HPRD:15990	SLC8A2	NCX2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_38753	chr16	75306049	75306166	+	6.05991	NA	Intergenic	Intergenic	-4156	NM_001170715	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_57512	chr2	192112603	192112743	+	6.05991	NA	intron (NM_001130158, intron 1 of 30)	intron (NM_001130158, intron 1 of 30)	2419	NM_001161819	4430	Hs.439620	NM_012223	HPRD:08407	MYO1B	myr1	myosin IB	protein-coding
19-PTNLD28-TUMOR_peak_102923	chr9	36141479	36141608	+	6.05991	NA	intron (NM_001287014, intron 1 of 1)	intron (NM_001287014, intron 1 of 1)	4761	NM_001287013	152007	Hs.493819	NM_022343	HPRD:06187	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis-related 2	protein-coding
19-PTNLD28-TUMOR_peak_45170	chr18	32072701	32072860	+	6.05991	NA	promoter-TSS (NM_001392)	promoter-TSS (NM_001392)	-474	NM_032979	1837	Hs.643454	NM_001390	HPRD:03141	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_44015	chr17	79790538	79790709	+	6.05664	NA	TTS (NM_001007533)	TTS (NM_001007533)	547	NM_001093767	348262	Hs.514632	NM_207368	HPRD:14179	FAM195B	-	family with sequence similarity 195, member B	protein-coding
19-PTNLD28-TUMOR_peak_38628	chr16	71842680	71842823	+	6.05664	NA	5' UTR (NM_001128, exon 1 of 23)	5' UTR (NM_001128, exon 1 of 23)	225	NM_001030007	164	Hs.461253	NM_001128	HPRD:04637	AP1G1	ADTG|CLAPG1	adaptor-related protein complex 1, gamma 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_73784	chr4	966455	966972	+	6.05664	NA	intron (NM_001347, intron 1 of 22)	intron (NM_001347, intron 1 of 22)	635	NM_001347	1609	Hs.584858	NM_001347	HPRD:03127	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase, theta 110kDa	protein-coding
19-PTNLD28-TUMOR_peak_6153	chr1	143950832	143950920	+	6.05664	NA	Intergenic	Intergenic	-37716	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_33349	chr15	44067759	44067949	+	6.05664	NA	intron (NM_025165, intron 4 of 10)	intron (NM_025165, intron 4 of 10)	-1440	NM_001199877	10169	Hs.424126	NM_005770		SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
19-PTNLD28-TUMOR_peak_55840	chr2	133428682	133428823	+	6.05176	NA	promoter-TSS (NM_144586)	promoter-TSS (NM_144586)	-271	NM_144586	116372	Hs.432395	NM_144586	HPRD:14333	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_71675	chr3	149956308	149956577	+	6.05176	NA	promoter-TSS (NR_110167)	promoter-TSS (NR_110167)	-45	NR_110167	101927992	Hs.534682	NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
19-PTNLD28-TUMOR_peak_32184	chr14	103595433	103595716	+	6.04752	NA	intron (NM_006291, intron 2 of 10)	intron (NM_006291, intron 2 of 10)	2910	NM_006291	7127	Hs.525607	NM_006291	HPRD:04487	TNFAIP2	B94|EXOC3L3	tumor necrosis factor, alpha-induced protein 2	protein-coding
19-PTNLD28-TUMOR_peak_2634	chr1	39644682	39644797	+	6.04752	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	94900	NM_012090	23499	Hs.472475	NM_012090	HPRD:09750	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
19-PTNLD28-TUMOR_peak_29810	chr14	34145424	34145520	+	6.04609	NA	exon (NM_022123, exon 5 of 11)	exon (NM_022123, exon 5 of 11)	274812	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_32647	chr15	26107285	26107390	+	6.04609	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	1012	NM_024490	57194	Hs.659258	NM_024490		ATP10A	ATP10C|ATPVA|ATPVC	ATPase, class V, type 10A	protein-coding
19-PTNLD28-TUMOR_peak_38287	chr16	67063736	67063848	+	6.04609	NA	intron (NM_022845, intron 2 of 5)	CpG-9385	742	NM_022845	865	Hs.460988	NM_001755	HPRD:00418	CBFB	PEBP2B	core-binding factor, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_7847	chr1	164629174	164629262	+	6.04609	NA	intron (NM_001204961, intron 2 of 7)	MLT1N2|LTR|ERVL-MaLR	100621	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_49087	chr19	41035279	41035434	+	6.04609	NA	intron (NM_020971, intron 18 of 35)	CpG	-1039	NM_025213	57731	Hs.32706	NM_020971	HPRD:09372	SPTBN4	QV|SPNB4|SPTBN3	spectrin, beta, non-erythrocytic 4	protein-coding
19-PTNLD28-TUMOR_peak_97438	chr8	19678624	19678737	+	6.04336	NA	intron (NM_018142, intron 4 of 16)	MLT1C|LTR|ERVL-MaLR	3762	NM_018142	55174	Hs.512627	NM_018142	HPRD:07686	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
19-PTNLD28-TUMOR_peak_72481	chr3	177077242	177077350	+	6.04289	NA	Intergenic	Intergenic	65066	NR_047465	100820709	Hs.518409	NR_047465		LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
19-PTNLD28-TUMOR_peak_108990	chrX	101854069	101854200	+	6.04258	NA	promoter-TSS (NM_022838)	promoter-TSS (NM_022838)	38	NM_001168480	64860	Hs.522729	NM_022838	HPRD:06521	ARMCX5	GASP5	armadillo repeat containing, X-linked 5	protein-coding
19-PTNLD28-TUMOR_peak_60666	chr20	33357717	33357805	+	6.04258	NA	intron (NM_001242539, intron 4 of 13)	intron (NM_001242539, intron 4 of 13)	55672	NM_001242539	23054	Hs.368971	NM_014071	HPRD:05599	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
19-PTNLD28-TUMOR_peak_24791	chr12	58026882	58027015	+	6.04258	NA	promoter-TSS (NM_001478)	promoter-TSS (NM_001478)	74	NM_001276469	2583	Hs.159481	NM_001478	HPRD:03525	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding
19-PTNLD28-TUMOR_peak_7412	chr1	157459274	157459390	+	6.04258	NA	Intergenic	Intergenic	62978	NM_031281	83416	Hs.415950	NM_031281	HPRD:16169	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor-like 5	protein-coding
19-PTNLD28-TUMOR_peak_37987	chr16	56709867	56710005	+	6.04258	NA	promoter-TSS (NR_003669)	promoter-TSS (NR_003669)	-92	NR_003669	644314	Hs.434199	NM_175621		MT1IP	MT1|MT1I|MTE	metallothionein 1I, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_54029	chr2	89233605	89233785	+	6.04258	NA	Intergenic	Intergenic	121811	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_66151	chr3	114567	114743	+	6.04258	NA	Intergenic	Intergenic	49224	NR_110824	102723448	Hs.543290	NR_110824		LOC102723448	-	uncharacterized LOC102723448	ncRNA
19-PTNLD28-TUMOR_peak_19764	chr11	70831789	70831895	+	6.04258	NA	intron (NM_012309, intron 2 of 22)	intron (NM_012309, intron 2 of 22)	104000	NM_012309	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_26525	chr12	117666148	117666293	+	6.04258	NA	intron (NM_001204214, intron 21 of 27)	intron (NM_001204214, intron 21 of 27)	-37920	NM_015002	23014	Hs.740376	NM_015002	HPRD:09948	FBXO21	FBX21	F-box protein 21	protein-coding
19-PTNLD28-TUMOR_peak_30564	chr14	59219613	59219702	+	6.04258	NA	Intergenic	Intergenic	-75349	NR_110547	102723742	Hs.232734	NR_110547		LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
19-PTNLD28-TUMOR_peak_30446	chr14	55894326	55894414	+	6.04258	NA	intron (NM_199047, intron 5 of 6)	intron (NM_199047, intron 5 of 6)	12893	NM_199047	387332	Hs.528278	NM_199047		TBPL2	TBP2|TRF3	TATA box binding protein like 2	protein-coding
19-PTNLD28-TUMOR_peak_28825	chr13	99803909	99804036	+	6.04258	NA	Intergenic	Intergenic	-48707	NM_001144072	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_11461	chr1	245633074	245633443	+	6.04258	NA	intron (NM_018012, intron 4 of 14)	intron (NM_018012, intron 4 of 14)	314971	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_2771	chr1	41201771	41201939	+	6.04258	NA	intron (NM_001142590, intron 6 of 14)	intron (NM_001142590, intron 6 of 14)	-18172	NR_029846	407034		NR_029846		MIR30E	MIRN30E	microRNA 30e	ncRNA
19-PTNLD28-TUMOR_peak_100585	chr8	125250611	125250741	+	6.04258	NA	intron (NR_125420, intron 1 of 2)	intron (NR_125420, intron 1 of 2)	8963	NR_125420	101927588	Hs.617072	NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
19-PTNLD28-TUMOR_peak_9279	chr1	201907110	201907299	+	6.04258	NA	intron (NM_012134, intron 1 of 2)	MIRb|SINE|MIR	8512	NM_012134	25802	Hs.519075	NM_012134	HPRD:04093	LMOD1	1D|64kD|D1|SM-LMOD	leiomodin 1 (smooth muscle)	protein-coding
19-PTNLD28-TUMOR_peak_81355	chr5	100516339	100516427	+	6.04258	NA	Intergenic	L1PA2|LINE|L1	-277394	NM_175052	7903	Hs.308628	NM_005668	HPRD:03970	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_2043	chr1	32001339	32001450	+	6.04258	NA	Intergenic	Intergenic	17358	NR_027085	284551	Hs.658659	NR_027085	ENSG00000223907	LINC01226	-	long intergenic non-protein coding RNA 1226	ncRNA
19-PTNLD28-TUMOR_peak_69041	chr3	72788055	72788148	+	6.04258	NA	Intergenic	CpG	109497	NM_018130	55164	Hs.606584	NM_018130	HPRD:07682	SHQ1	Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
19-PTNLD28-TUMOR_peak_79263	chr5	26483002	26483129	+	6.04258	NA	Intergenic	LTR35A|LTR|ERV1	555624	NM_016279	1007	Hs.272212	NM_016279	HPRD:13021	CDH9	-	cadherin 9, type 2 (T1-cadherin)	protein-coding
19-PTNLD28-TUMOR_peak_44889	chr18	20807300	20807403	+	6.04258	NA	intron (NR_023359, intron 4 of 6)	intron (NR_023359, intron 4 of 6)	71562	NM_138375	91768	Hs.11108	NM_138375	HPRD:16461	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_514	chr1	8329270	8329363	+	6.04258	NA	Intergenic	AluJb|SINE|Alu	-48829	NM_001080397	50651	Hs.463036	NM_001080397	ENSG00000162426	SLC45A1	DNB5	solute carrier family 45, member 1	protein-coding
19-PTNLD28-TUMOR_peak_50118	chr19	52741206	52741333	+	6.04258	NA	Intergenic	FRAM|SINE|Alu	15996	NR_106859	102466984		NR_106859		MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
19-PTNLD28-TUMOR_peak_45035	chr18	25342151	25342239	+	6.04258	NA	Intergenic	Intergenic	415250	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_88416	chr6	77480302	77480416	+	6.04258	NA	Intergenic	LTR64|LTR|ERV1	692761	NM_000863	3351	Hs.123016	NM_000863		HTR1B	5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_102704	chr9	33398123	33398365	+	6.03763	NA	intron (NM_001170, intron 2 of 7)	L2|LINE|L2	4273	NM_001170	364	Hs.455323	NM_001170	HPRD:04277	AQP7	AQP7L|AQP9|AQPap|GLYCQTL	aquaporin 7	protein-coding
19-PTNLD28-TUMOR_peak_79827	chr5	52084099	52084328	+	6.03763	NA	promoter-TSS (NM_181501)	promoter-TSS (NM_181501)	77	NM_181501	3672	Hs.644352	NM_181501		ITGA1	CD49a|VLA1	integrin, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_63850	chr21	44790167	44790440	+	6.03763	NA	Intergenic	Intergenic	-38384	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
19-PTNLD28-TUMOR_peak_89612	chr6	137483254	137483360	+	6.03763	NA	intron (NM_181309, intron 1 of 5)	intron (NM_181309, intron 1 of 5)	11478	NM_052962	116379	Hs.126891	NM_052962	HPRD:05973	IL22RA2	CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16	interleukin 22 receptor, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_15400	chr10	104998740	104998995	+	6.03763	NA	Intergenic	Intergenic	-6777	NM_001143909	729020	Hs.458437	NM_001143909	ENSG00000235376	RPEL1	-	ribulose-5-phosphate-3-epimerase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21220	chr11	112755261	112755408	+	6.03763	NA	Intergenic	Intergenic	-76635	NM_181351	4684	Hs.503878	NM_000615	HPRD:00301	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_103607	chr9	70116405	70116519	+	6.03763	NA	Intergenic	Intergenic	62353	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
19-PTNLD28-TUMOR_peak_39666	chr17	1953176	1953264	+	6.03763	NA	promoter-TSS (NR_029674)	promoter-TSS (NR_029674)	82	NR_029674	406921		NR_029674	miRBase:MI0000449	MIR132	MIRN132|miRNA132	microRNA 132	ncRNA
19-PTNLD28-TUMOR_peak_5393	chr1	110075593	110075705	+	6.03763	NA	Intergenic	Intergenic	-6845	NM_031936	83873	Hs.709782	NM_031936	HPRD:06077	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
19-PTNLD28-TUMOR_peak_25859	chr12	102957937	102958057	+	6.03763	NA	Intergenic	MER39B|LTR|ERV1	-83619	NM_001111283	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_3561	chr1	53771511	53771599	+	6.03763	NA	intron (NM_001018054, intron 2 of 17)	intron (NM_001018054, intron 2 of 17)	22266	NM_004631	7804	Hs.280387	NM_004631		LRP8	APOER2|HSZ75190|LRP-8|MCI1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding
19-PTNLD28-TUMOR_peak_8845	chr1	185015088	185015191	+	6.03763	NA	intron (NM_007212, intron 1 of 6)	CpG	588	NM_007212	6045	Hs.591490	NM_007212	HPRD:07028	RNF2	BAP-1|BAP1|DING|HIPI3|RING1B|RING2	ring finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_13195	chr10	43707548	43707677	+	6.03550	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	17575	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_106176	chr9	130346312	130346607	+	6.03550	NA	Intergenic	AluY|SINE|Alu	-5173	NM_001035534	64855	Hs.522401	NM_022833	HPRD:10804	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129, member B	protein-coding
19-PTNLD28-TUMOR_peak_13194	chr10	43707280	43707438	+	6.03550	NA	intron (NM_145313, intron 1 of 12)	MIRc|SINE|MIR	17828	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_77282	chr4	141348744	141348945	+	6.03550	NA	promoter-TSS (NM_004362)	promoter-TSS (NM_004362)	-29	NM_004362	1047	Hs.86368	NM_004362	HPRD:03513	CLGN	-	calmegin	protein-coding
19-PTNLD28-TUMOR_peak_20801	chr11	100555598	100555695	+	6.03550	NA	Intergenic	Intergenic	-2761	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_90046	chr6	151463049	151463212	+	6.03514	NA	Intergenic	Intergenic	-98004	NM_005100	9590	Hs.371240	NM_005100	HPRD:05263	AKAP12	AKAP250|SSeCKS	A kinase (PRKA) anchor protein 12	protein-coding
19-PTNLD28-TUMOR_peak_94872	chr7	112430433	112430551	+	6.03514	NA	promoter-TSS (NM_022484)	promoter-TSS (NM_022484)	-14	NR_109840	64418	Hs.606345	NM_022484		TMEM168	-	transmembrane protein 168	protein-coding
19-PTNLD28-TUMOR_peak_56837	chr2	169203273	169203371	+	6.03514	NA	Intergenic	Intergenic	-99217	NM_013233	27347	Hs.276271	NM_013233	HPRD:09627	STK39	DCHT|PASK|SPAK	serine threonine kinase 39	protein-coding
19-PTNLD28-TUMOR_peak_59509	chr20	2505202	2505355	+	6.03514	NA	promoter-TSS (NM_001282495)	promoter-TSS (NM_001282495)	-110	NM_001282495	79175	Hs.516846	NM_024325	HPRD:18327	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
19-PTNLD28-TUMOR_peak_8983	chr1	192732556	192732706	+	6.03514	NA	Intergenic	Intergenic	-45538	NM_002923	5997	Hs.78944	NM_002923	HPRD:02917	RGS2	G0S8	regulator of G-protein signaling 2	protein-coding
19-PTNLD28-TUMOR_peak_10755	chr1	229892566	229892655	+	6.03514	NA	Intergenic	Intergenic	130629	NM_014777	9816	Hs.533628	NM_014777	HPRD:17178	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_31886	chr14	95982429	95982605	+	6.03514	NA	Intergenic	CpG	17449	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
19-PTNLD28-TUMOR_peak_99638	chr8	98776228	98776316	+	6.03514	NA	Intergenic	AluJb|SINE|Alu	-11537	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
19-PTNLD28-TUMOR_peak_92201	chr7	43233457	43233793	+	6.03514	NA	intron (NM_015052, intron 2 of 29)	MER4D0|LTR|ERV1	43131	NR_037508	100500829		NR_037508		MIR3943	-	microRNA 3943	ncRNA
19-PTNLD28-TUMOR_peak_40745	chr17	25927014	25927109	+	6.03514	NA	intron (NM_014238, intron 10 of 20)	Tigger3b|DNA|TcMar-Tigger	-31113	NR_024043	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	lectin, galactoside-binding, soluble, 9	protein-coding
19-PTNLD28-TUMOR_peak_49764	chr19	49346139	49346300	+	6.03514	NA	intron (NM_020904, intron 16 of 19)	intron (NM_020904, intron 16 of 19)	-6285	NM_016246	51171	Hs.18788	NM_016246	HPRD:16801	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding
19-PTNLD28-TUMOR_peak_29955	chr14	37125513	37125687	+	6.03514	NA	Intergenic	CpG	-1173	NM_006194	5083	Hs.132576	NM_006194	HPRD:01336	PAX9	STHAG3	paired box 9	protein-coding
19-PTNLD28-TUMOR_peak_106551	chr9	135900846	135900934	+	6.03514	NA	Intergenic	LTR13|LTR|ERVK	-5172	NM_001286709	9328	Hs.495417	NM_012087	HPRD:16077	GTF3C5	TFIIIC63|TFIIICepsilon|TFiiiC2-63	general transcription factor IIIC, polypeptide 5, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_43173	chr17	68164321	68164409	+	6.03483	NA	non-coding (NR_036534, exon 1 of 1)	non-coding (NR_036534, exon 1 of 1)	1178	NR_036534	400617	Hs.225661	NR_036534	ENSG00000267365	KCNJ2-AS1	-	KCNJ2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_2172	chr1	33240960	33241048	+	6.03483	NA	TTS (NM_001198973)	TTS (NM_001198973)	9769	NM_001198972	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
19-PTNLD28-TUMOR_peak_51686	chr2	26915575	26915707	+	6.03483	NA	promoter-TSS (NM_002246)	promoter-TSS (NM_002246)	60	NM_002246	3777	Hs.645288	NM_002246		KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium channel, subfamily K, member 3	protein-coding
19-PTNLD28-TUMOR_peak_5323	chr1	109235866	109235954	+	6.03295	NA	intron (NM_018061, intron 1 of 5)	intron (NM_018061, intron 1 of 5)	975	NR_037185	55119	Hs.342307	NM_018061	HPRD:07664	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
19-PTNLD28-TUMOR_peak_26755	chr12	121974620	121974785	+	6.03295	NA	intron (NM_001005366, intron 6 of 22)	intron (NM_001005366, intron 6 of 22)	43662	NM_001005366	84678	Hs.524800	NM_032590	HPRD:12362	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine (K)-specific demethylase 2B	protein-coding
19-PTNLD28-TUMOR_peak_10366	chr1	224387481	224387670	+	6.03295	NA	Intergenic	Intergenic	13406	NR_110669	101927143	Hs.638720	NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
19-PTNLD28-TUMOR_peak_47000	chr19	7939565	7939689	+	6.03190	NA	promoter-TSS (NM_001190467)	promoter-TSS (NM_001190467)	-301	NR_104345	80164	Hs.288540	NM_001080403	ENSG00000183248	FLJ22184	-	putative uncharacterized protein FLJ22184	protein-coding
19-PTNLD28-TUMOR_peak_29157	chr13	113863671	113863778	+	6.03190	NA	promoter-TSS (NM_018386)	promoter-TSS (NM_018386)	-95	NM_001008895	8451	Hs.339735	NM_003589	HPRD:07218	CUL4A	-	cullin 4A	protein-coding
19-PTNLD28-TUMOR_peak_92569	chr7	51384363	51384470	+	6.03190	NA	promoter-TSS (NM_001287438)	promoter-TSS (NM_001287438)	99	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_94154	chr7	98248172	98248283	+	6.03190	NA	intron (NM_002523, intron 1 of 4)	MIR|SINE|MIR	1630	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_103143	chr9	40755820	40755921	+	6.03190	NA	Intergenic	Intergenic	36242	NM_033160	26149	Hs.522147	NM_033160	HPRD:11342	ZNF658	-	zinc finger protein 658	protein-coding
19-PTNLD28-TUMOR_peak_22586	chr12	4141034	4141199	+	6.03068	NA	Intergenic	MIR3|SINE|MIR	-158502	NM_001286521	57097	Hs.657268	NM_020367	HPRD:15101	PARP11	ARTD11|C12orf6|MIB006	poly (ADP-ribose) polymerase family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_40053	chr17	8024070	8024158	+	6.02811	NA	3' UTR (NM_032580, exon 4 of 4)	3' UTR (NM_032580, exon 4 of 4)	-1880	NM_001165960	59344	Hs.232770	NM_021628	HPRD:06231	ALOXE3	ARCI3|E-LOX|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_77226	chr4	140735878	140736010	+	6.02502	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	149022	NM_002413	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_92103	chr7	39663688	39663840	+	6.02502	NA	intron (NM_005402, intron 1 of 4)	CpG	612	NM_005402	5898	Hs.6906	NM_005402	HPRD:01549	RALA	RAL	v-ral simian leukemia viral oncogene homolog A (ras related)	protein-coding
19-PTNLD28-TUMOR_peak_15421	chr10	105303385	105303524	+	6.01553	NA	intron (NM_004210, intron 1 of 5)	L2c|LINE|L2	-26255	NR_120675	102724341	Hs.599425	NR_120675		NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45527	chr18	44497815	44497964	+	6.01553	NA	promoter-TSS (NM_004671)	promoter-TSS (NM_004671)	-394	NM_004671	9063	Hs.657844	NM_004671	HPRD:06944	PIAS2	ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4	protein inhibitor of activated STAT, 2	protein-coding
19-PTNLD28-TUMOR_peak_21727	chr11	122395282	122395387	+	6.01553	NA	Intergenic	Intergenic	-131064	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_35473	chr15	100557284	100557594	+	6.01553	NA	intron (NM_139057, intron 18 of 21)	L1PB1|LINE|L1	-210307	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_39982	chr17	7348540	7348817	+	6.01553	NA	TTS (NM_004112)	TTS (NM_004112)	272	NM_000747	1140	Hs.330386	NM_000747	HPRD:01156	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|SCCMS	cholinergic receptor, nicotinic, beta 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_27936	chr13	40977219	40977355	+	6.01553	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	77856	NR_024507	646982	Hs.287664	NR_024505		LINC00598	TTL	long intergenic non-protein coding RNA 598	ncRNA
19-PTNLD28-TUMOR_peak_95059	chr7	127275164	127275267	+	6.01553	NA	Intergenic	Intergenic	-16987	NM_014390	27044	Hs.122523	NM_014390	HPRD:03714	SND1	TDRD11|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_90720	chr7	215466	215878	+	6.01553	NA	intron (NM_020223, intron 3 of 9)	intron (NM_020223, intron 3 of 9)	22703	NM_020223	56975	Hs.134742	NM_020223		FAM20C	DMP-4|DMP4|GEF-CK|RNS	family with sequence similarity 20, member C	protein-coding
19-PTNLD28-TUMOR_peak_6454	chr1	147189939	147190068	+	6.01350	NA	Intergenic	HERVL18-int|LTR|ERVL	42711	NM_181703	2702	Hs.447968	NM_005266	HPRD:08699	GJA5	ATFB11|CX40	gap junction protein, alpha 5, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_40028	chr17	7816281	7816491	+	6.01304	NA	TTS (NM_005852)	TTS (NM_005852)	2879	NR_024349	284023	Hs.744470	NR_024349	ENSG00000179859	LOC284023	-	uncharacterized LOC284023	ncRNA
19-PTNLD28-TUMOR_peak_2100	chr1	32480146	32480271	+	6.01304	NA	intron (NM_001271878, intron 1 of 7)	CpG	913	NR_073498	10657	Hs.445893	NM_006559	HPRD:03926	KHDRBS1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding
19-PTNLD28-TUMOR_peak_91087	chr7	5560936	5561089	+	6.01304	NA	Intergenic	Intergenic	-7613	NM_024963	80028	Hs.623974	NM_024963	HPRD:07753	FBXL18	Fbl18	F-box and leucine-rich repeat protein 18	protein-coding
19-PTNLD28-TUMOR_peak_48605	chr19	34856062	34856201	+	6.01246	NA	promoter-TSS (NM_001289790)	promoter-TSS (NM_001289790)	99	NM_001289790	2821	Hs.466471	NM_000175	HPRD:01394	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
19-PTNLD28-TUMOR_peak_8461	chr1	178511332	178511443	+	6.01177	NA	promoter-TSS (NR_033186)	promoter-TSS (NR_033186)	-544	NR_033186	400798	Hs.668085	NM_207467	HPRD:13417	C1orf220	-	chromosome 1 open reading frame 220	ncRNA
19-PTNLD28-TUMOR_peak_3575	chr1	53892204	53892372	+	6.01149	NA	Intergenic	HERVH-int|LTR|ERV1	13405	NR_002314	163742	Hs.99394	NR_002314	ENSG00000236253	SLC25A3P1	-	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_106069	chr9	127632015	127632173	+	6.01149	NA	intron (NM_030978, intron 1 of 3)	CpG	610	NM_030978	81873	Hs.132499	NM_030978	HPRD:12490	ARPC5L	ARC16-2	actin related protein 2/3 complex, subunit 5-like	protein-coding
19-PTNLD28-TUMOR_peak_53866	chr2	86224261	86224400	+	6.01149	NA	Intergenic	Intergenic	26661	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA
19-PTNLD28-TUMOR_peak_14099	chr10	71934047	71934144	+	6.01149	NA	Intergenic	LTR40a|LTR|ERVL	-3810	NM_001142648	56681	Hs.499960	NM_020150	HPRD:07608	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated, Ras related GTPase 1A	protein-coding
19-PTNLD28-TUMOR_peak_41493	chr17	40118626	40118935	+	6.01149	NA	promoter-TSS (NM_033133)	promoter-TSS (NM_033133)	21	NM_033133	1267	Hs.273621	NM_033133	HPRD:00448	CNP	CNP1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
19-PTNLD28-TUMOR_peak_93562	chr7	77044982	77045073	+	6.01130	NA	intron (NR_110073, intron 1 of 4)	CpG	512	NR_110073	101927243	Hs.547753	NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
19-PTNLD28-TUMOR_peak_35233	chr15	91415197	91415320	+	6.01130	NA	promoter-TSS (NM_001289824)	promoter-TSS (NM_001289824)	489	NM_001289823	5045	Hs.513153	NM_002569	HPRD:00653	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
19-PTNLD28-TUMOR_peak_44530	chr18	10015532	10015634	+	6.01130	NA	Intergenic	L2c|LINE|L2	101628	NM_003574	9218	Hs.165195	NM_003574	HPRD:09299	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa	protein-coding
19-PTNLD28-TUMOR_peak_6030	chr1	120798301	120798394	+	6.01130	NA	Intergenic	Intergenic	-40658	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72, member B	protein-coding
19-PTNLD28-TUMOR_peak_38331	chr16	67337111	67337214	+	6.01130	NA	exon (NM_001100915, exon 4 of 16)	exon (NM_001100915, exon 4 of 16)	23499	NM_001100915	146212	Hs.299127	NM_001100915	ENSG00000168676	KCTD19	-	potassium channel tetramerization domain containing 19	protein-coding
19-PTNLD28-TUMOR_peak_25673	chr12	96017511	96017683	+	6.01130	NA	Intergenic	Intergenic	-25434	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_44753	chr18	15163601	15163709	+	6.01076	NA	Intergenic	Intergenic	162263	NR_027417	644669	Hs.579474	NR_027417	ENSG00000215512	LOC644669	-	ankyrin repeat domain 30B pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109889	chrX	152912499	152912701	+	6.01076	NA	intron (NM_001395, intron 1 of 3)	CpG	4703	NM_001395	1852	Hs.144879	NM_001395	HPRD:02136	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
19-PTNLD28-TUMOR_peak_7737	chr1	161988834	161989003	+	6.01076	NA	intron (NM_015441, intron 2 of 7)	intron (NM_015441, intron 2 of 7)	5337	NM_001297713	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_9805	chr1	207198897	207198991	+	6.01076	NA	intron (NM_001083924, intron 1 of 2)	intron (NM_001083924, intron 1 of 2)	7157	NM_023938	79098	Hs.32417	NM_023938	HPRD:15294	C1orf116	SARG	chromosome 1 open reading frame 116	protein-coding
19-PTNLD28-TUMOR_peak_75102	chr4	42659655	42659822	+	6.01076	NA	promoter-TSS (NM_006095)	promoter-TSS (NM_006095)	-616	NM_006095	10396	Hs.435052	NM_006095	HPRD:16527	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_25308	chr12	72352819	72352937	+	6.01076	NA	intron (NM_173353, intron 5 of 10)	intron (NM_173353, intron 5 of 10)	20252	NM_173353	121278	Hs.736576	NM_173353	HPRD:09594	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding
19-PTNLD28-TUMOR_peak_19752	chr11	70592212	70592399	+	6.01076	NA	intron (NM_012309, intron 11 of 22)	intron (NM_012309, intron 11 of 22)	-84360	NR_110766	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_13724	chr10	60095567	60095657	+	6.01076	NA	intron (NM_001204880, intron 1 of 5)	intron (NM_001204880, intron 1 of 5)	873	NM_001204880	7321	Hs.129683	NM_003338	HPRD:04267	UBE2D1	E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A	ubiquitin-conjugating enzyme E2D 1	protein-coding
19-PTNLD28-TUMOR_peak_91494	chr7	20399004	20399387	+	6.01076	NA	intron (NM_002214, intron 1 of 13)	intron (NM_002214, intron 1 of 13)	-27810	NR_110119	101927811	Hs.285724	NR_110119	ENSG00000271133	LOC101927811	-	uncharacterized LOC101927811	ncRNA
19-PTNLD28-TUMOR_peak_3320	chr1	47974441	47974545	+	6.01076	NA	Intergenic	Intergenic	72804	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_91133	chr7	5889680	5889829	+	6.00639	NA	intron (NR_023382, intron 6 of 6)	intron (NR_023382, intron 6 of 6)	26963	NR_023382	401303	Hs.372707	NR_023382	ENSG00000235944	ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_62479	chr20	60879033	60879149	+	6.00450	NA	intron (NM_001281437, intron 2 of 8)	intron (NM_001281437, intron 2 of 8)	1139	NM_001281437	11047	Hs.90107	NM_007002	HPRD:06440	ADRM1	ARM-1|ARM1|GP110	adhesion regulating molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_59242	chr2	241309356	241309454	+	6.00236	NA	Intergenic	Intergenic	-65710	NM_002081	2817	Hs.328232	NM_002081	HPRD:02671	GPC1	glypican	glypican 1	protein-coding
19-PTNLD28-TUMOR_peak_41256	chr17	36861268	36861397	+	6.00236	NA	promoter-TSS (NM_005937)	promoter-TSS (NM_005937)	-541	NM_005937	4302	Hs.91531	NM_005937	HPRD:08978	MLLT6	AF17	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6	protein-coding
19-PTNLD28-TUMOR_peak_28254	chr13	50699809	50699901	+	6.00236	NA	promoter-TSS (NR_002612)	promoter-TSS (NR_002612)	-178	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_26896	chr12	123579364	123579689	+	6.00151	NA	intron (NM_001300801, intron 1 of 24)	intron (NM_001300801, intron 1 of 24)	13595	NR_038290	100507091	Hs.683912	NR_038290	ENSG00000251497	LOC100507091	-	uncharacterized LOC100507091	ncRNA
19-PTNLD28-TUMOR_peak_62168	chr20	54746276	54746374	+	6.00151	NA	Intergenic	Intergenic	-77463	NM_019888	4159	Hs.248018	NM_019888	HPRD:01115	MC3R	BMIQ9|MC3|MC3-R|OB20|OQTL	melanocortin 3 receptor	protein-coding
19-PTNLD28-TUMOR_peak_36885	chr16	24082332	24082481	+	6.00151	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-184468	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_73047	chr3	187739434	187739568	+	6.00151	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-132160	NM_001167672	4026	Hs.720220	NM_005578	HPRD:02828	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19-PTNLD28-TUMOR_peak_83263	chr5	150665889	150665987	+	6.00151	NA	intron (NM_001145017, intron 7 of 10)	AluJr4|SINE|Alu	17396	NM_181774	285641	Hs.720893	NM_181774	HPRD:12216	SLC36A3	PAT3|TRAMD2|tramdorin2	solute carrier family 36, member 3	protein-coding
19-PTNLD28-TUMOR_peak_109476	chrX	131138810	131138955	+	6.00151	NA	Intergenic	Intergenic	-18363	NM_001042453	51765	Hs.444247	NM_016542	HPRD:06663	MST4	MASK	serine/threonine protein kinase MST4	protein-coding
19-PTNLD28-TUMOR_peak_45965	chr18	56658766	56659019	+	6.00151	NA	Intergenic	Intergenic	-44079	NR_024021	390858	Hs.722775	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_56005	chr2	138596057	138596238	+	6.00151	NA	Intergenic	Intergenic	89355	NR_120402	101928273	Hs.560928	NR_120402	ENSG00000234007	LOC101928273	-	uncharacterized LOC101928273	ncRNA
19-PTNLD28-TUMOR_peak_1926	chr1	29769781	29769896	+	6.00151	NA	Intergenic	L2|LINE|L2	-93212	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LOC101928460	-	uncharacterized LOC101928460	ncRNA
19-PTNLD28-TUMOR_peak_67836	chr3	45098509	45098630	+	6.00151	NA	Intergenic	Intergenic	30810	NM_003278	7123	Hs.476092	NM_003278	HPRD:01759	CLEC3B	TN|TNA	C-type lectin domain family 3, member B	protein-coding
19-PTNLD28-TUMOR_peak_7040	chr1	154113860	154114034	+	6.00151	NA	exon (NM_001159484, exon 4 of 38)	exon (NM_001159484, exon 4 of 38)	13645	NM_001159484	91181	Hs.67639	NM_207308	HPRD:14852	NUP210L	-	nucleoporin 210kDa-like	protein-coding
19-PTNLD28-TUMOR_peak_27371	chr13	21015291	21015398	+	6.00151	NA	intron (NM_015974, intron 3 of 7)	MER5A|DNA|hAT-Charlie	-7359	NR_039721	100616304		NR_039721		MIR4499	-	microRNA 4499	ncRNA
19-PTNLD28-TUMOR_peak_97188	chr8	11813231	11813425	+	6.00151	NA	Intergenic	Intergenic	18780	NM_001033018	613210	Hs.558285	NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin, beta 136	protein-coding
19-PTNLD28-TUMOR_peak_30093	chr14	45858743	45858926	+	6.00151	NA	Intergenic	SVA_F|Other|Other	-136229	NM_018353	55320	Hs.732769	NM_018353	HPRD:12629	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25455	chr12	81330375	81330493	+	6.00151	NA	promoter-TSS (NR_030349)	promoter-TSS (NR_030349)	-822	NR_030349	693203		NR_030349		MIR618	MIRN618|hsa-mir-618	microRNA 618	ncRNA
19-PTNLD28-TUMOR_peak_89946	chr6	150175805	150175893	+	6.00151	NA	intron (NM_032832, intron 1 of 6)	intron (NM_032832, intron 1 of 6)	-8785	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_3238	chr1	46972142	46972331	+	6.00151	NA	promoter-TSS (NM_147192)	promoter-TSS (NM_147192)	-432	NM_147192	127343	Hs.375623	NM_147192	HPRD:07593	DMBX1	MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_19760	chr11	70748341	70748433	+	6.00151	NA	intron (NM_012309, intron 7 of 22)	intron (NM_012309, intron 7 of 22)	-29914	NR_037437	100500844		NR_037437		MIR3664	-	microRNA 3664	ncRNA
19-PTNLD28-TUMOR_peak_86300	chr6	28186352	28186832	+	6.00151	NA	non-coding (NR_002936, exon 1 of 1)	non-coding (NR_002936, exon 1 of 1)	115	NR_002936	222699	Hs.161441	NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_78116	chr4	176922362	176922740	+	6.00151	NA	intron (NM_005277, intron 1 of 7)	CpG	1291	NM_201592	2823	Hs.75819	NM_005277	HPRD:03174	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
19-PTNLD28-TUMOR_peak_86918	chr6	34173401	34173599	+	6.00019	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-31077	NM_145903	3159	Hs.518805	NM_002131	HPRD:02829	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
19-PTNLD28-TUMOR_peak_67738	chr3	42785897	42786108	+	6.00019	NA	intron (NR_046732, intron 3 of 3)	intron (NR_046732, intron 3 of 3)	11935	NR_046732	100874114	Hs.669654	NR_046732	ENSG00000173811	CCDC13-AS1	-	CCDC13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72724	chr3	183613111	183613201	+	6.00019	NA	Intergenic	Intergenic	-10463	NM_001037639	55486	Hs.478469	NM_018622	HPRD:08484	PARL	PSARL|PSARL1|PSENIP2|RHBDS1	presenilin associated, rhomboid-like	protein-coding
19-PTNLD28-TUMOR_peak_96881	chr8	1949859	1950198	+	6.00019	NA	exon (NM_014867, exon 2 of 2)	exon (NM_014867, exon 2 of 2)	27984	NM_014867	9920	Hs.5333	NM_014867	HPRD:17195	KBTBD11	KLHDC7C	kelch repeat and BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_69255	chr3	87138270	87138453	+	6.00019	NA	promoter-TSS (NR_047469)	promoter-TSS (NR_047469)	-69	NR_047469	100846978	Hs.570649	NR_047469		LINC00506	-	long intergenic non-protein coding RNA 506	ncRNA
19-PTNLD28-TUMOR_peak_12952	chr10	35896632	35896763	+	6.00019	NA	exon (NM_153368, exon 2 of 2)	exon (NM_153368, exon 2 of 2)	2359	NM_153368	219770	Hs.638922	NM_153368	HPRD:13103	GJD4	CX40.1	gap junction protein, delta 4, 40.1kDa	protein-coding
19-PTNLD28-TUMOR_peak_12391	chr10	23447450	23447538	+	6.00019	NA	Intergenic	Intergenic	-33966	NM_178161	256297	Hs.351503	NM_178161	HPRD:09526	PTF1A	PACA|PAGEN2|PTF1-p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding
19-PTNLD28-TUMOR_peak_7204	chr1	155294814	155294912	+	6.00019	NA	promoter-TSS (NM_001039517)	promoter-TSS (NM_001039517)	677	NR_103478	23623	Hs.226499	NM_014328	HPRD:10206	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4822	chr1	91191270	91191478	+	6.00019	NA	Intergenic	CpG	-8580	NM_020063	343472	Hs.451956	NM_020063		BARHL2	-	BarH-like homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_46580	chr19	1325256	1325354	+	6.00019	NA	Intergenic	CpG	-29671	NM_032853	84939	Hs.515016	NM_032853	HPRD:14789	MUM1	EXPAND1|HSPC211|MUM-1	melanoma associated antigen (mutated) 1	protein-coding
19-PTNLD28-TUMOR_peak_88924	chr6	105389054	105389174	+	6.00019	NA	promoter-TSS (NR_046407)	promoter-TSS (NR_046407)	-712	NR_046407	100113403	Hs.649249	NR_046407	ENSG00000203809	LINC00577	C6orf220|dJ439I14.1	long intergenic non-protein coding RNA 577	ncRNA
19-PTNLD28-TUMOR_peak_37290	chr16	30933034	30933217	+	6.00003	NA	non-coding (NR_024348, exon 1 of 1)	non-coding (NR_024348, exon 1 of 1)	-1251	NM_001282351	54620	Hs.152149	NM_019085	HPRD:12366	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine-rich repeat protein 19	protein-coding
19-PTNLD28-TUMOR_peak_93133	chr7	72436096	72436339	+	5.99595	NA	Intergenic	Intergenic	-3948	NR_003602	541473	Hs.645394	NM_001013748	HPRD:18674	LOC541473	-	FK506 binding protein 6, 36kDa pseudogene	pseudo
19-PTNLD28-TUMOR_peak_48040	chr19	18390440	18390528	+	5.99176	NA	TTS (NM_005354)	TTS (NM_005354)	1982	NM_005354	3727	Hs.2780	NM_005354	HPRD:01304	JUND	AP-1	jun D proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_62259	chr20	55926323	55926705	+	5.99152	NA	promoter-TSS (NM_001015885)	promoter-TSS (NM_001015885)	-104	NM_001015885	8480	Hs.371698	NM_003610		RAE1	MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
19-PTNLD28-TUMOR_peak_99125	chr8	70404826	70405298	+	5.99152	NA	promoter-TSS (NM_001128205)	promoter-TSS (NM_001128205)	34	NM_001128205	23213	Hs.409602	NM_015170	HPRD:15450	SULF1	HSULF-1|SULF-1	sulfatase 1	protein-coding
19-PTNLD28-TUMOR_peak_58685	chr2	227664444	227664702	+	5.99075	NA	Intergenic	CpG	-1067	NM_005544	3667	Hs.471508	NM_005544	HPRD:00943	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_72715	chr3	183416170	183416388	+	5.98790	NA	intron (NM_018023, intron 1 of 30)	intron (NM_018023, intron 1 of 30)	673	NM_018023	55689	Hs.632575	NM_018023	HPRD:07652	YEATS2	-	YEATS domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_76806	chr4	120331876	120332006	+	5.98724	NA	promoter-TSS (NR_037596)	promoter-TSS (NR_037596)	-126	NR_037596	401149	Hs.448518	NR_037596		LINC01061	-	long intergenic non-protein coding RNA 1061	ncRNA
19-PTNLD28-TUMOR_peak_23152	chr12	13154250	13154504	+	5.98724	NA	non-coding (NR_002774, exon 1 of 1)	non-coding (NR_002774, exon 1 of 1)	1001	NR_002774	93164	Hs.593282	NR_002774		HTR7P1	HTR7P	5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_41803	chr17	43340195	43340362	+	5.98724	NA	promoter-TSS (NM_152343)	promoter-TSS (NM_152343)	-799	NM_152343	124783	Hs.412719	NM_152343	HPRD:08690	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
19-PTNLD28-TUMOR_peak_83384	chr5	153904560	153904766	+	5.98724	NA	Intergenic	LTR43|LTR|ERV1	-46839	NM_004821	9421	Hs.152531	NM_004821	HPRD:03871	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
19-PTNLD28-TUMOR_peak_83186	chr5	149701931	149702148	+	5.98724	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-19514	NM_001012301	340075	Hs.591252	NM_001012301	HPRD:16510	ARSI	SPG66	arylsulfatase family, member I	protein-coding
19-PTNLD28-TUMOR_peak_95332	chr7	130700403	130700537	+	5.98724	NA	intron (NR_109850, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	91319	NR_024153	378805	Hs.150556	NM_001085379	ENSG00000226380	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
19-PTNLD28-TUMOR_peak_79916	chr5	54522897	54523264	+	5.98724	NA	promoter-TSS (NM_001190787)	promoter-TSS (NM_001190787)	63	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
19-PTNLD28-TUMOR_peak_14319	chr10	75336985	75337171	+	5.98724	NA	Intergenic	Intergenic	-1645	NM_152586	159195	Hs.657355	NM_152586	HPRD:15641	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
19-PTNLD28-TUMOR_peak_101082	chr8	133687213	133687353	+	5.98547	NA	intron (NM_012472, intron 1 of 11)	MIR|SINE|MIR	580	NR_073525	23639	Hs.591865	NM_012472	HPRD:10286	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
19-PTNLD28-TUMOR_peak_56048	chr2	139465115	139465213	+	5.98547	NA	intron (NM_007226, intron 1 of 1)	L3|LINE|CR1	72647	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_74094	chr4	4867966	4868178	+	5.98547	NA	Intergenic	Intergenic	6680	NM_002448	4487	Hs.424414	NM_002448	HPRD:00866	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_70558	chr3	127348571	127348661	+	5.98547	NA	intron (NM_015720, intron 1 of 7)	CpG	614	NM_015720	50512	Hs.591290	NM_015720	HPRD:15154	PODXL2	EG|PODLX2	podocalyxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_44326	chr18	3409292	3409380	+	5.98547	NA	Intergenic	AluJb|SINE|Alu	-2589	NM_174886	7050	Hs.373550	NM_003244	HPRD:04023	TGIF1	HPE4|TGIF	TGFB-induced factor homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_91474	chr7	20197239	20197347	+	5.98547	NA	intron (NM_182762, intron 5 of 6)	AluJr|SINE|Alu	15754	NR_046756	100874041	Hs.145104	NR_046756	ENSG00000228598	MACC1-AS1	-	MACC1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_70955	chr3	133748376	133748919	+	5.98547	NA	5' UTR (NM_005630, exon 1 of 14)	5' UTR (NM_005630, exon 1 of 14)	273	NM_005630	6578	Hs.518270	NM_005630	HPRD:03269	SLCO2A1	MATR1|OATP2A1|PGT|PHOAR2|SLC21A2	solute carrier organic anion transporter family, member 2A1	protein-coding
19-PTNLD28-TUMOR_peak_52572	chr2	46558975	46559154	+	5.98547	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	34523	NM_001430	2034	Hs.468410	NM_001430	HPRD:06787	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_17520	chr11	18743669	18743783	+	5.98547	NA	intron (NM_173588, intron 2 of 22)	intron (NM_173588, intron 2 of 22)	4051	NM_173588	283284	Hs.434152	NM_173588	HPRD:08229	IGSF22	-	immunoglobulin superfamily, member 22	protein-coding
19-PTNLD28-TUMOR_peak_33089	chr15	38544892	38545006	+	5.98402	NA	promoter-TSS (NM_152594)	promoter-TSS (NM_152594)	-103	NM_152594	161742	Hs.525781	NM_152594	HPRD:11601	SPRED1	NFLS|PPP1R147|hSpred1|spred-1	sprouty-related, EVH1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16556	chr11	1241096	1241335	+	5.98402	NA	Intergenic	Intergenic	-3080	NM_002458	727897	Hs.523395	NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_5590	chr1	113051422	113051551	+	5.98402	NA	5' UTR (NM_024494, exon 1 of 5)	5' UTR (NM_024494, exon 1 of 5)	116	NM_024494	7482	Hs.258575	NM_004185		WNT2B	WNT13	wingless-type MMTV integration site family, member 2B	protein-coding
19-PTNLD28-TUMOR_peak_17459	chr11	17375182	17375296	+	5.98402	NA	intron (NM_001202439, intron 1 of 4)	CpG	1930	NM_001202439	374383	Hs.146274	NM_001009913	HPRD:16820	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
19-PTNLD28-TUMOR_peak_38529	chr16	70153361	70153456	+	5.98402	NA	intron (NM_017990, intron 2 of 18)	L2a|LINE|L2	5879	NM_017990	55066	Hs.744043	NM_017990	HPRD:17832	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
19-PTNLD28-TUMOR_peak_78533	chr4	191032714	191032892	+	5.97897	NA	Intergenic	HERVK-int|LTR|ERVK	47146	NR_121644	100419743		NR_121644		DBET	DBE-T	D4Z4 binding element transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_34369	chr15	72461871	72462083	+	5.97226	NA	intron (NM_001012642, intron 2 of 11)	intron (NM_001012642, intron 2 of 11)	28159	NM_001012642	196996	Hs.596332	NM_001012642	HPRD:13161	GRAMD2	-	GRAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_54351	chr2	97619369	97619595	+	5.97141	NA	intron (NM_001122646, intron 6 of 16)	intron (NM_001122646, intron 6 of 16)	32819	NM_001122646	51252	Hs.107922	NM_016490	HPRD:14235	FAM178B	-	family with sequence similarity 178, member B	protein-coding
19-PTNLD28-TUMOR_peak_40416	chr17	17713396	17713495	+	5.96934	NA	3' UTR (NM_030665, exon 6 of 6)	3' UTR (NM_030665, exon 6 of 6)	3414	NR_106835	102465466		NR_106835		MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
19-PTNLD28-TUMOR_peak_48604	chr19	34855801	34855955	+	5.96880	NA	promoter-TSS (NM_001289790)	promoter-TSS (NM_001289790)	-154	NM_000175	2821	Hs.466471	NM_000175	HPRD:01394	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
19-PTNLD28-TUMOR_peak_1956	chr1	30446370	30446497	+	5.96880	NA	Intergenic	Intergenic	64026	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_60574	chr20	32077931	32078337	+	5.96880	NA	intron (NM_001032999, intron 1 of 10)	CpG	206	NM_001032999	9139	Hs.153934	NM_005093	HPRD:04721	CBFA2T2	EHT|MTGR1|ZMYND3|p85	core-binding factor, runt domain, alpha subunit 2; translocated to, 2	protein-coding
19-PTNLD28-TUMOR_peak_35485	chr15	100889995	100890146	+	5.96520	NA	non-coding (NR_028139, exon 1 of 2)	non-coding (NR_028139, exon 1 of 2)	368	NR_028140	388182	Hs.136982	NM_207383	HPRD:16960	SPATA41	-	spermatogenesis associated 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_12672	chr10	29988700	29988801	+	5.96520	NA	intron (NM_003174, intron 1 of 35)	intron (NM_003174, intron 1 of 35)	35980	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_31466	chr14	78227026	78227158	+	5.96520	NA	promoter-TSS (NM_001173978)	promoter-TSS (NM_001173978)	-81	NM_174943	283579	Hs.375834	NM_174943	HPRD:08080	C14orf178	-	chromosome 14 open reading frame 178	protein-coding
19-PTNLD28-TUMOR_peak_28028	chr13	43570799	43570893	+	5.96520	NA	Intergenic	Intergenic	-4439	NM_033255	94240	Hs.546467	NM_033255	HPRD:06309	EPSTI1	BRESI1	epithelial stromal interaction 1 (breast)	protein-coding
19-PTNLD28-TUMOR_peak_53842	chr2	86019988	86020076	+	5.96520	NA	Intergenic	Intergenic	-9232	NR_106719	102466516		NR_106719		MIR6071	hsa-mir-6071	microRNA 6071	ncRNA
19-PTNLD28-TUMOR_peak_94490	chr7	101922894	101922989	+	5.96520	NA	intron (NM_001913, intron 18 of 22)	intron (NM_001913, intron 18 of 22)	-5412	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23068	chr12	12102889	12103265	+	5.96520	NA	Intergenic	Intergenic	-23970	NR_046487	100873754		NR_046487	ENSG00000207449	RNU6-19P	RNU6-19	RNA, U6 small nuclear 19, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_10788	chr1	230517873	230518185	+	5.96520	NA	intron (NM_001258311, intron 1 of 6)	intron (NM_001258311, intron 1 of 6)	43645	NM_001258311	79605	Hs.520463	NM_024554	HPRD:10148	PGBD5	-	piggyBac transposable element derived 5	protein-coding
19-PTNLD28-TUMOR_peak_40748	chr17	25958424	25958571	+	5.96520	NA	intron (NR_024043, intron 1 of 9)	intron (NR_024043, intron 1 of 9)	323	NM_002308	3965	Hs.81337	NM_002308		LGALS9	HUAT|LGALS9A	lectin, galactoside-binding, soluble, 9	protein-coding
19-PTNLD28-TUMOR_peak_23728	chr12	34486494	34486589	+	5.96520	NA	Intergenic	Intergenic	311325	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_83226	chr5	150122882	150123011	+	5.96520	NA	intron (NM_001135643, intron 3 of 13)	L1PA3|LINE|L1	15136	NM_001135644	51164	Hs.675564	NM_016221	HPRD:13126	DCTN4	DYN4|P62	dynactin 4 (p62)	protein-coding
19-PTNLD28-TUMOR_peak_192	chr1	1906390	1906481	+	5.96520	NA	intron (NM_001080484, intron 6 of 17)	intron (NM_001080484, intron 6 of 17)	28841	NM_001080484	85452	Hs.232092	NM_001003808		KIAA1751	C1orf222	KIAA1751	protein-coding
19-PTNLD28-TUMOR_peak_53679	chr2	80531818	80531906	+	5.96520	NA	promoter-TSS (NM_001282600)	promoter-TSS (NM_001282600)	-368	NM_001282600	1496	Hs.167368	NM_004389	HPRD:00228	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin (cadherin-associated protein), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_12906	chr10	35016632	35016726	+	5.96520	NA	intron (NM_001184791, intron 1 of 20)	intron (NM_001184791, intron 1 of 20)	87574	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_39227	chr16	85852954	85853088	+	5.96520	NA	Intergenic	Intergenic	19848	NM_001861	1327	Hs.433419	NM_001861	HPRD:00466	COX4I1	COX4|COX4-1|COXIV	cytochrome c oxidase subunit IV isoform 1	protein-coding
19-PTNLD28-TUMOR_peak_27351	chr13	20701987	20702104	+	5.96520	NA	Intergenic	CpG	33138	NM_021954	2700	Hs.130313	NM_021954	HPRD:00415	GJA3	CTRCT14|CX46|CZP3	gap junction protein, alpha 3, 46kDa	protein-coding
19-PTNLD28-TUMOR_peak_78931	chr5	11130259	11130513	+	5.96520	NA	intron (NM_001288717, intron 11 of 20)	intron (NM_001288717, intron 11 of 20)	-368999	NM_001291963	1611	Hs.75189	NM_004394	HPRD:02977	DAP	-	death-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_88559	chr6	84418191	84418444	+	5.96520	NA	intron (NM_001242793, intron 1 of 27)	CpG	203	NM_001256718	9892	Hs.368046	NM_014841	HPRD:06391	SNAP91	AP180|CALM	synaptosomal-associated protein, 91kDa	protein-coding
19-PTNLD28-TUMOR_peak_72390	chr3	172363442	172363537	+	5.96374	NA	intron (NM_001146278, intron 1 of 3)	intron (NM_001146278, intron 1 of 3)	65519	NM_001146278	57552	Hs.444099	NM_020792	HPRD:07489	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_29757	chr14	32546443	32546568	+	5.96374	NA	promoter-TSS (NM_001173)	promoter-TSS (NM_001173)	10	NM_001030055	394	Hs.592313	NM_001173	HPRD:04060	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
19-PTNLD28-TUMOR_peak_31258	chr14	74315956	74316077	+	5.96315	NA	Intergenic	AluJr|SINE|Alu	-2518	NM_001146154	145482	Hs.632344	NM_152444	HPRD:09782	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_3678	chr1	55323557	55323708	+	5.96315	NA	intron (NM_014762, intron 6 of 8)	intron (NM_014762, intron 6 of 8)	29289	NM_014762	1718	Hs.498727	NM_014762	HPRD:05916	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
19-PTNLD28-TUMOR_peak_96283	chr7	150101955	150102059	+	5.96174	NA	promoter-TSS (NR_027237)	promoter-TSS (NR_027237)	-833	NR_027237	728743	Hs.650365	NM_001080852		LOC728743	-	zinc finger protein pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74953	chr4	38163981	38164144	+	5.96174	NA	Intergenic	LTR78|LTR|ERV1	42487	NM_001253915	23216	Hs.176503	NM_015173	HPRD:18161	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_59217	chr2	240821204	240821292	+	5.96095	NA	Intergenic	Intergenic	61263	NR_039949	100616417		NR_039949	miRBase:MI0017433	MIR4786	-	microRNA 4786	ncRNA
19-PTNLD28-TUMOR_peak_101270	chr8	137241393	137241596	+	5.96095	NA	Intergenic	Intergenic	771778	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_78486	chr4	190058611	190058741	+	5.96095	NA	Intergenic	L1HS|LINE|L1	-522084	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_66528	chr3	10266641	10266833	+	5.96095	NA	intron (NM_001570, intron 9 of 12)	intron (NM_001570, intron 9 of 12)	-23440	NM_014760	9797	Hs.475401	NM_014760	HPRD:18712	TATDN2	-	TatD DNase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_80799	chr5	76097472	76097652	+	5.96095	NA	Intergenic	L2a|LINE|L2	-17271	NM_005242	2150	Hs.744181	NM_005242	HPRD:02960	F2RL1	GPR11|PAR2	coagulation factor II (thrombin) receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_18053	chr11	35258227	35258445	+	5.96095	NA	Intergenic	Intergenic	97919	NM_001202556	960	Hs.502328	NM_000610	HPRD:00115	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding
19-PTNLD28-TUMOR_peak_25537	chr12	89784651	89784939	+	5.96095	NA	Intergenic	L2b|LINE|L2	-38159	NM_022652	1848	Hs.298654	NM_001946	HPRD:04124	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
19-PTNLD28-TUMOR_peak_64214	chr22	17739038	17739148	+	5.96095	NA	non-coding (NR_038398, exon 3 of 3)	non-coding (NR_038398, exon 3 of 3)	8530	NR_038398	27442	Hs.517394	NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_94315	chr7	100121863	100121957	+	5.96095	NA	Intergenic	SVA_D|Other|Other	-14924	NM_006076	3268	Hs.521083	NM_006076	HPRD:04932	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
19-PTNLD28-TUMOR_peak_58616	chr2	224625666	224625783	+	5.96095	NA	intron (NR_110906, intron 3 of 3)	intron (NR_110906, intron 3 of 3)	76595	NR_110906	130340	Hs.632555	NM_178814	HPRD:16495	AP1S3	-	adaptor-related protein complex 1, sigma 3 subunit	protein-coding
19-PTNLD28-TUMOR_peak_21791	chr11	123172415	123172540	+	5.96095	NA	Intergenic	CpG	79743	NR_039714	100616319		NR_039714	miRBase:MI0016855	MIR4493	-	microRNA 4493	ncRNA
19-PTNLD28-TUMOR_peak_74150	chr4	6252565	6252723	+	5.96095	NA	Intergenic	Intergenic	-18933	NM_001145853	7466	Hs.518602	NM_006005	HPRD:05864	WFS1	CTRCT41|WFRS|WFS|WFSL	Wolfram syndrome 1 (wolframin)	protein-coding
19-PTNLD28-TUMOR_peak_99024	chr8	66948883	66949013	+	5.96095	NA	intron (NM_033105, intron 1 of 5)	intron (NM_033105, intron 1 of 5)	15157	NM_033105	85479	Hs.491885	NM_033105	HPRD:07474	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
19-PTNLD28-TUMOR_peak_109086	chrX	106568010	106568187	+	5.96095	NA	Intergenic	MER52D|LTR|ERV1	118236	NM_173494	139212	Hs.128836	NM_173494	HPRD:06650	PIH1D3	CXorf41|NYSAR97	PIH1 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_103918	chr9	78251742	78251970	+	5.96095	NA	intron (NR_031679, intron 2 of 2).2	intron (NR_031679, intron 2 of 2).2	86888	NR_031679	100302287		NR_031679		MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
19-PTNLD28-TUMOR_peak_36387	chr16	13479384	13479510	+	5.96095	NA	Intergenic	L1MD2|LINE|L1	483970	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_20163	chr11	76422797	76423008	+	5.96095	NA	intron (NR_024042, intron 8 of 20)	LTR5A|LTR|ERVK	9931	NR_024042	390226	Hs.440026	NR_024042		GUCY2EP	GC-E|GCD|GUCY2E	guanylate cyclase 2E, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30725	chr14	64193963	64194430	+	5.95726	NA	exon (NM_030791, exon 1 of 3)	exon (NM_030791, exon 1 of 3)	560	NM_030791	81537	Hs.24678	NM_030791	HPRD:10226	SGPP1	SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_84521	chr5	179604441	179604631	+	5.95726	NA	intron (NM_175062, intron 1 of 13)	MLT1K|LTR|ERVL-MaLR	31594	NM_175062	255426	Hs.190559	NM_175062	HPRD:15212	RASGEF1C	-	RasGEF domain family, member 1C	protein-coding
19-PTNLD28-TUMOR_peak_7834	chr1	164561833	164562109	+	5.95726	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	33374	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_104374	chr9	90329851	90329943	+	5.95726	NA	Intergenic	Intergenic	-11077	NM_001912	1514	Hs.731507	NM_001912	HPRD:00293	CTSL	CATL|CTSL1|MEP	cathepsin L	protein-coding
19-PTNLD28-TUMOR_peak_57127	chr2	177024207	177024336	+	5.95717	NA	Intergenic	Intergenic	-4534	NM_006898	3232	Hs.93574	NM_006898	HPRD:00863	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
19-PTNLD28-TUMOR_peak_96846	chr8	580348	580481	+	5.95717	NA	Intergenic	Intergenic	-84633	NM_175075	157695	Hs.289293	NM_175075	HPRD:13740	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
19-PTNLD28-TUMOR_peak_59735	chr20	9049235	9049511	+	5.95544	NA	promoter-TSS (NM_001172646)	promoter-TSS (NM_001172646)	-328	NM_001172646	5332	Hs.472101	NM_000933	HPRD:02885	PLCB4	ARCND2|PI-PLC	phospholipase C, beta 4	protein-coding
19-PTNLD28-TUMOR_peak_66549	chr3	10643063	10643156	+	5.95544	NA	Intergenic	MIRc|SINE|MIR	25383	NR_046766	100874325	Hs.143004	NR_046766		ATP2B2-IT2	-	ATP2B2 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_15010	chr10	97055050	97055170	+	5.95544	NA	Intergenic	Intergenic	-4205	NM_020992	9124	Hs.368525	NM_020992	HPRD:09326	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
19-PTNLD28-TUMOR_peak_98986	chr8	63951653	63951809	+	5.95544	NA	promoter-TSS (NM_003878)	promoter-TSS (NM_003878)	-121	NM_003878	8836	Hs.78619	NM_003878	HPRD:03299	GGH	GH	gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)	protein-coding
19-PTNLD28-TUMOR_peak_51674	chr2	26781721	26781825	+	5.95544	NA	promoter-TSS (NM_194248)	promoter-TSS (NM_194248)	-207	NM_001287489	9381	Hs.91608	NM_004802	HPRD:04727	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
19-PTNLD28-TUMOR_peak_1009	chr1	16029572	16029665	+	5.95544	NA	intron (NM_015164, intron 1 of 19)	intron (NM_015164, intron 1 of 19)	18791	NM_015164	23207	Hs.646775	NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding
19-PTNLD28-TUMOR_peak_69388	chr3	98696398	98696683	+	5.95544	NA	Intergenic	Intergenic	-76007	NM_080927	131566	Hs.203691	NM_080927	HPRD:10567	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_96851	chr8	592925	593151	+	5.95544	NA	Intergenic	Intergenic	88188	NM_207332	157697	Hs.655310	NM_207332	HPRD:14105	ERICH1	-	glutamate-rich 1	protein-coding
19-PTNLD28-TUMOR_peak_87711	chr6	44598291	44598379	+	5.95544	NA	Intergenic	Intergenic	194957	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_51256	chr2	15701422	15701510	+	5.95544	NA	promoter-TSS (NM_015909)	promoter-TSS (NM_015909)	6	NR_052013	51594	Hs.467759	NM_015909	HPRD:10473	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
19-PTNLD28-TUMOR_peak_37426	chr16	32714715	32714837	+	5.95544	NA	Intergenic	Intergenic	-27326	NR_110910	24150	Hs.592038	NM_015369		TP53TG3	P53TG3|TP53TG3A	TP53 target 3	protein-coding
19-PTNLD28-TUMOR_peak_81167	chr5	92918692	92918845	+	5.95184	NA	promoter-TSS (NM_005654)	promoter-TSS (NM_005654)	-275	NM_005654	7025	Hs.519445	NM_005654	HPRD:00584	NR2F1	BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2, group F, member 1	protein-coding
19-PTNLD28-TUMOR_peak_98505	chr8	42752493	42752697	+	5.95184	NA	promoter-TSS (NM_030954)	promoter-TSS (NM_030954)	562	NM_032410	84376	Hs.162852	NM_032410	HPRD:09699	HOOK3	HK3	hook microtubule-tethering protein 3	protein-coding
19-PTNLD28-TUMOR_peak_41763	chr17	43096676	43096863	+	5.95184	NA	Intergenic	CpG	32116	NM_001288655	79877	Hs.463148	NM_024819	HPRD:08012	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_80429	chr5	68390150	68390511	+	5.95184	NA	intron (NM_001251969, intron 1 of 2)	CpG	554	NM_024055	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_71935	chr3	156846848	156847027	+	5.94943	NA	Intergenic	Intergenic	-6146	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
19-PTNLD28-TUMOR_peak_8562	chr1	180502790	180502879	+	5.94735	NA	Intergenic	Intergenic	-25276	NR_125716	148756		NR_125716		OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_55978	chr2	137523620	137523807	+	5.94735	NA	Intergenic	Intergenic	-224749	NM_001080427	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin, type I, domain containing 7B	protein-coding
19-PTNLD28-TUMOR_peak_58531	chr2	220553891	220554083	+	5.94735	NA	Intergenic	Intergenic	61695	NR_048551	6508	Hs.1176	NM_005070	HPRD:00109	SLC4A3	AE3|SLC2C	solute carrier family 4 (anion exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_106121	chr9	129424789	129424880	+	5.94735	NA	intron (NM_002316, intron 2 of 7)	intron (NM_002316, intron 2 of 7)	48112	NM_002316	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_100752	chr8	127557668	127557777	+	5.94735	NA	Intergenic	Intergenic	12989	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_105810	chr9	123341886	123341979	+	5.94735	NA	intron (NM_001011649, intron 1 of 36)	intron (NM_001011649, intron 1 of 36)	516	NR_073556	55755	Hs.269560	NM_018249	HPRD:09740	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_22801	chr12	6833739	6833894	+	5.94485	NA	5' UTR (NM_001164093, exon 1 of 7)	5' UTR (NM_001164093, exon 1 of 7)	367	NM_001164093	50813	Hs.530823	NM_016319	HPRD:16736	COPS7A	CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding
19-PTNLD28-TUMOR_peak_47714	chr19	15363320	15363427	+	5.94485	NA	intron (NM_014299, intron 11 of 11)	intron (NM_014299, intron 11 of 11)	-19515	NM_001142886	79852	Hs.156457	NM_024794	HPRD:12410	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
19-PTNLD28-TUMOR_peak_58163	chr2	211035158	211035285	+	5.94485	NA	intron (NM_152519, intron 1 of 14)	intron (NM_152519, intron 1 of 14)	830	NM_152519	151050	Hs.282260	NM_152519	HPRD:08679	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1-like	protein-coding
19-PTNLD28-TUMOR_peak_88668	chr6	88441296	88441447	+	5.94485	NA	Intergenic	AluJo|SINE|Alu	-29386	NM_018064	55122	Hs.485915	NM_018064	HPRD:12864	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
19-PTNLD28-TUMOR_peak_82295	chr5	134581781	134581908	+	5.94485	NA	intron (NR_037895, intron 2 of 3)	intron (NR_037895, intron 2 of 3)	2023	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_60772	chr20	34741843	34741935	+	5.94485	NA	promoter-TSS (NM_012156)	promoter-TSS (NM_012156)	-773	NM_012156	2036	Hs.437422	NM_012156	HPRD:04193	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_38777	chr16	75589162	75589313	+	5.94485	NA	intron (NR_074083, intron 2 of 6)	intron (NR_074083, intron 2 of 6)	947	NM_001077418	79583	Hs.156784	NM_001077416	ENSG00000205084	TMEM231	ALYE870|JBTS20|MKS11|PRO1886	transmembrane protein 231	protein-coding
19-PTNLD28-TUMOR_peak_17257	chr11	12745931	12746082	+	5.94253	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	50037	NM_021961	7003	Hs.655331	NM_021961	HPRD:01802	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	protein-coding
19-PTNLD28-TUMOR_peak_78430	chr4	187647746	187647946	+	5.94253	NA	Intergenic	CpG-20331	-2859	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_74014	chr4	3731659	3731792	+	5.93929	NA	Intergenic	Intergenic	-36571	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_87949	chr6	52417197	52417297	+	5.93929	NA	intron (NM_012288, intron 1 of 10)	MIR3|SINE|MIR	24615	NM_012288	9697	Hs.520182	NM_012288	HPRD:16338	TRAM2	-	translocation associated membrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_9742	chr1	206638146	206638300	+	5.93929	NA	TTS (NM_015326)	TTS (NM_015326)	-5363	NM_001193321	9641	Hs.321045	NM_014002	HPRD:05442	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	protein-coding
19-PTNLD28-TUMOR_peak_62470	chr20	60758254	60758426	+	5.93929	NA	TTS (NM_198935)	TTS (NM_198935)	259	NM_015666	26164	Hs.340636	NM_015666	HPRD:13617	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome-associated GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_37152	chr16	29691637	29691767	+	5.93929	NA	intron (NM_014298, intron 1 of 3)	LTR14C|LTR|ERVK	1261	NM_014298	23475	Hs.513484	NM_014298		QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_91496	chr7	20422971	20423078	+	5.93929	NA	intron (NM_002214, intron 6 of 13)	intron (NM_002214, intron 6 of 13)	-51639	NR_110119	101927811	Hs.285724	NR_110119	ENSG00000271133	LOC101927811	-	uncharacterized LOC101927811	ncRNA
19-PTNLD28-TUMOR_peak_70180	chr3	122693706	122693802	+	5.93713	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	1227	NM_001256347	54437	Hs.210870	NM_018987	HPRD:15322	SEMA5B	SEMAG|SemG	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding
19-PTNLD28-TUMOR_peak_22349	chr12	248875	248983	+	5.93263	NA	intron (NM_015232, intron 3 of 12)	intron (NM_015232, intron 3 of 12)	9403	NR_033859	574538	Hs.589138	NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
19-PTNLD28-TUMOR_peak_24927	chr12	63119144	63119268	+	5.93263	NA	intron (NM_020700, intron 5 of 9)	MER39|LTR|ERV1	121740	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_70444	chr3	125653885	125653997	+	5.93263	NA	intron (NM_001195223, intron 1 of 6)	intron (NM_001195223, intron 1 of 6)	1946	NM_001195223	200810	Hs.591299	NM_001015050	HPRD:18574	ALG1L	ALG1L1	ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_21922	chr11	125980260	125980427	+	5.93179	NA	Intergenic	Intergenic	-47156	NM_001243597	50937	Hs.38034	NM_016952	HPRD:16372	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_33230	chr15	41407724	41408021	+	5.93080	NA	intron (NR_104038, intron 1 of 34)	intron (NR_104038, intron 1 of 34)	572	NR_104038	54617	Hs.292949	NM_017553	HPRD:10024	INO80	INO80A|INOC1|hINO80	INO80 complex subunit	protein-coding
19-PTNLD28-TUMOR_peak_10547	chr1	227161628	227161809	+	5.93080	NA	intron (NM_020247, intron 4 of 14)	intron (NM_020247, intron 4 of 14)	33780	NM_020247	56997	Hs.118241	NM_020247	HPRD:07375	ADCK3	ARCA2|CABC1|COQ10D4|COQ8|SCAR9	aarF domain containing kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_90461	chr6	165636353	165636441	+	5.93080	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	86714	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_34314	chr15	71073649	71073832	+	5.93080	NA	Intergenic	Intergenic	-17890	NM_018003	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_76028	chr4	84036359	84036447	+	5.93080	NA	promoter-TSS (NM_016619)	promoter-TSS (NM_016619)	-492	NM_001130715	51316	Hs.546392	NM_016619	HPRD:06335	PLAC8	C15|DGIC|onzin	placenta-specific 8	protein-coding
19-PTNLD28-TUMOR_peak_103955	chr9	79030141	79030301	+	5.93080	NA	Intergenic	AluJb|SINE|Alu	16706	NR_026890	653162	Hs.655646	NR_026890	ENSG00000234618	RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_35159	chr15	90208835	90208932	+	5.93080	NA	exon (NM_002666, exon 9 of 9)	exon (NM_002666, exon 9 of 9)	-10201	NM_198525	374654	Hs.513134	NM_198525	HPRD:14187	KIF7	ACLS|HLS2|JBTS12|UNQ340	kinesin family member 7	protein-coding
19-PTNLD28-TUMOR_peak_97111	chr8	10369042	10369193	+	5.93080	NA	Intergenic	MER21C|LTR|ERVL	-13939	NM_001197020	203074	Hs.591394	NM_198464	HPRD:07162	PRSS55	CT153|T-SP1|TSP1|UNQ9391	protease, serine, 55	protein-coding
19-PTNLD28-TUMOR_peak_64302	chr22	18814737	18814896	+	5.93080	NA	Intergenic	Intergenic	-35342	NR_003267	2679	Hs.595809	NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_33698	chr15	57801424	57801604	+	5.93080	NA	intron (NM_032866, intron 8 of 18)	intron (NM_032866, intron 8 of 18)	-82588	NR_104368	145781	Hs.437256	NM_001018090		GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
19-PTNLD28-TUMOR_peak_106317	chr9	131684941	131685059	+	5.93080	NA	intron (NM_001100876, intron 3 of 12)	intron (NM_001100876, intron 3 of 12)	438	NM_001100877	254295	Hs.709447	NM_174933	HPRD:17850	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_87029	chr6	35551726	35551884	+	5.93080	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-71126	NM_003322	7287	Hs.485208	NM_003322	HPRD:03788	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_26379	chr12	112953167	112953335	+	5.93080	NA	Intergenic	MER20|DNA|hAT-Charlie	96715	NM_002834	5781	Hs.506852	NM_002834	HPRD:01470	PTPN11	BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase, non-receptor type 11	protein-coding
19-PTNLD28-TUMOR_peak_102298	chr9	16275539	16275725	+	5.93080	NA	intron (NR_073471, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	679	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_105327	chr9	112260529	112260797	+	5.93063	NA	promoter-TSS (NM_001145368)	promoter-TSS (NM_001145368)	-70	NM_001145368	5774	Hs.436429	NM_002829	HPRD:06767	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
19-PTNLD28-TUMOR_peak_76201	chr4	88929505	88929629	+	5.93063	NA	intron (NM_000297, intron 1 of 14)	CpG	768	NM_000297	5311	Hs.181272	NM_000297	HPRD:01437	PKD2	APKD2|PC2|PKD4|Pc-2|TRPP2	polycystic kidney disease 2 (autosomal dominant)	protein-coding
19-PTNLD28-TUMOR_peak_40879	chr17	28257153	28257350	+	5.93063	NA	promoter-TSS (NM_033389)	promoter-TSS (NM_033389)	-5	NM_001282130	85464	Hs.654754	NM_033389	HPRD:09487	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_42080	chr17	46868509	46868602	+	5.93063	NA	intron (NM_173623, intron 2 of 8)	intron (NM_173623, intron 2 of 8)	3131	NM_173623	284076	Hs.91930	NM_173623	HPRD:08763	TTLL6	TTL.6	tubulin tyrosine ligase-like family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_19623	chr11	68778031	68778196	+	5.92831	NA	intron (NM_001098515, intron 1 of 2)	MIRb|SINE|MIR	-1709	NR_120541	101928200	Hs.703759	NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19563	chr11	67797593	67797720	+	5.92831	NA	promoter-TSS (NM_002496)	promoter-TSS (NM_002496)	-428	NM_002496	4728	Hs.90443	NM_002496	HPRD:03683	NDUFS8	CI-23k|CI23KD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)	protein-coding
19-PTNLD28-TUMOR_peak_89009	chr6	108880965	108881054	+	5.92766	NA	promoter-TSS (NM_201559)	promoter-TSS (NM_201559)	-17	NM_201559	2309	Hs.220950	NM_001455	HPRD:04061	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
19-PTNLD28-TUMOR_peak_84537	chr5	179780682	179780933	+	5.92564	NA	promoter-TSS (NM_005110)	promoter-TSS (NM_005110)	-492	NM_005110	9945	Hs.696497	NM_005110	HPRD:04842	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
19-PTNLD28-TUMOR_peak_54806	chr2	110274093	110274181	+	5.92541	NA	Intergenic	Intergenic	97646	NM_178584	151011	Hs.469615	NM_144710	HPRD:15325	SEPT10	-	septin 10	protein-coding
19-PTNLD28-TUMOR_peak_73585	chr3	196366220	196366344	+	5.92541	NA	promoter-TSS (NM_198565)	promoter-TSS (NM_198565)	-374	NM_198565	375387	Hs.702186	NM_198565	HPRD:17452	NRROS	GARPL1|LRRC33|UNQ3030	negative regulator of reactive oxygen species	protein-coding
19-PTNLD28-TUMOR_peak_91983	chr7	34907111	34907289	+	5.92541	NA	intron (NM_001300933, intron 8 of 8)	intron (NM_001300933, intron 8 of 8)	-33257	NR_015356	404744	Hs.487951	NM_207283	HPRD:12265	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80352	chr5	66613835	66614074	+	5.92541	NA	Intergenic	LTR16D|LTR|ERVL	-121337	NM_005582	4064	Hs.87205	NM_005582	HPRD:03749	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
19-PTNLD28-TUMOR_peak_51326	chr2	16825554	16825700	+	5.92541	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	21507	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_96388	chr7	151136907	151137211	+	5.92541	NA	promoter-TSS (NM_144727)	promoter-TSS (NM_144727)	40	NM_144727	155051	Hs.647104	NM_144727	HPRD:16761	CRYGN	-	crystallin, gamma N	protein-coding
19-PTNLD28-TUMOR_peak_69940	chr3	115044546	115044634	+	5.92077	NA	Intergenic	Intergenic	-178463	NM_015642	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_77158	chr4	139852724	139852816	+	5.92077	NA	Intergenic	HERVH-int|LTR|ERV1	-84143	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_48563	chr19	33907267	33907423	+	5.92077	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	41915	NM_001252296	1054	Hs.429666	NM_001806	HPRD:00738	CEBPG	GPE1BP|IG/EBP-1	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding
19-PTNLD28-TUMOR_peak_63431	chr21	38233381	38233494	+	5.92077	NA	intron (NM_001242785, intron 7 of 11)	L2b|LINE|L2	105519	NM_001242784	3141	Hs.371350	NM_000411	HPRD:08360	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
19-PTNLD28-TUMOR_peak_66328	chr3	6902718	6902867	+	5.92077	NA	promoter-TSS (NM_000844)	promoter-TSS (NM_000844)	-10	NM_181874	2917	Hs.606393	NM_000844	HPRD:04979	GRM7	GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87	glutamate receptor, metabotropic 7	protein-coding
19-PTNLD28-TUMOR_peak_60466	chr20	30679661	30679984	+	5.92077	NA	intron (NM_001172130, intron 10 of 12)	intron (NM_001172130, intron 10 of 12)	-17487	NM_014742	9777	Hs.654665	NM_014742	HPRD:15514	TM9SF4	dJ836N17.2	transmembrane 9 superfamily protein member 4	protein-coding
19-PTNLD28-TUMOR_peak_72026	chr3	158818311	158818399	+	5.92077	NA	intron (NM_001042706, intron 1 of 3)	L1HS|LINE|L1	31314	NM_001197100	654502	Hs.570685	NM_001042705	ENSG00000214216	IQCJ	-	IQ motif containing J	protein-coding
19-PTNLD28-TUMOR_peak_67700	chr3	42067194	42067302	+	5.92077	NA	Intergenic	Intergenic	-63588	NM_017886	54986	Hs.656192	NM_017886	HPRD:07928	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_76128	chr4	86996978	86997126	+	5.92077	NA	intron (NM_138982, intron 9 of 13)	L1PA2|LINE|L1	31754	NM_138981	5602	Hs.13438	NM_002753	HPRD:04207	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_10136	chr1	220473945	220474093	+	5.92077	NA	Intergenic	Intergenic	-28176	NM_012414	25782	Hs.654849	NM_012414	HPRD:11471	RAB3GAP2	RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating protein subunit 2 (non-catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_105043	chr9	104137953	104138093	+	5.92077	NA	intron (NM_001701, intron 1 of 3)	MER61A|LTR|ERV1	7778	NM_001127610	570	Hs.284712	NM_001701	HPRD:08376	BAAT	BACAT|BAT	bile acid CoA:amino acid N-acyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_11850	chr10	6050845	6050941	+	5.92077	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-30743	NM_001243539	3601	Hs.445124	NM_002189	HPRD:03045	IL15RA	CD215	interleukin 15 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_69075	chr3	73539945	73540050	+	5.92077	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-30476	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_34649	chr15	77808560	77808653	+	5.92077	NA	Intergenic	Intergenic	95363	NM_018200	10363	Hs.69594	NM_018200	HPRD:16116	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
19-PTNLD28-TUMOR_peak_76061	chr4	84561196	84561289	+	5.92077	NA	Intergenic	Intergenic	103772	NM_032717	84803	Hs.99196	NM_032717	HPRD:14417	AGPAT9	AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
19-PTNLD28-TUMOR_peak_30895	chr14	68171282	68171492	+	5.92077	NA	intron (NM_152443, intron 1 of 8)	intron (NM_152443, intron 1 of 8)	2784	NM_152443	145226	Hs.415322	NM_152443	HPRD:10585	RDH12	LCA13|LCA3|RP53|SDR7C2	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)	protein-coding
19-PTNLD28-TUMOR_peak_45360	chr18	39879122	39879487	+	5.92077	NA	intron (NR_046457, intron 4 of 6)	intron (NR_046457, intron 4 of 6)	112671	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_84946	chr6	3938595	3938717	+	5.92077	NA	Intergenic	AluSx|SINE|Alu	-82913	NM_003913	8899	Hs.159014	NM_003913	HPRD:09087	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding
19-PTNLD28-TUMOR_peak_82943	chr5	145267703	145267793	+	5.92077	NA	Intergenic	Intergenic	-15217	NM_001080516	643226	Hs.570895	NM_001080516	ENSG00000204928	GRXCR2	DFNB101	glutaredoxin, cysteine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_93791	chr7	86849479	86849652	+	5.92072	NA	promoter-TSS (NM_024315)	promoter-TSS (NM_024315)	-534	NM_024315	79161	Hs.619593	NM_024315	HPRD:12911	TMEM243	C7orf23|MM-TRAG	transmembrane protein 243, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_38758	chr16	75323193	75323322	+	5.91575	NA	Intergenic	Intergenic	-21306	NM_001170715	9564	Hs.479747	NM_014567	HPRD:04248	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	breast cancer anti-estrogen resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_36091	chr16	6983454	6983658	+	5.91575	NA	intron (NM_001142334, intron 1 of 13)	AluSx1|SINE|Alu	159746	NM_001142334	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_7706	chr1	161510243	161510352	+	5.91575	NA	Intergenic	Intergenic	9521	NM_001127592	2214	Hs.372679	NM_000569	HPRD:00903	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3|IMD20	Fc fragment of IgG, low affinity IIIa, receptor (CD16a)	protein-coding
19-PTNLD28-TUMOR_peak_50600	chr19	59117124	59117233	+	5.91486	NA	Intergenic	LTR60|LTR|ERV1	30412	NR_026052	65996	Hs.541177	NM_023939	HPRD:14527	CENPBD1P1	-	CENPBD1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_71803	chr3	152877223	152877442	+	5.91291	NA	Intergenic	MER115|DNA|hAT-Tip100	-2669	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_40070	chr17	8079660	8079793	+	5.91231	NA	promoter-TSS (NM_032354)	promoter-TSS (NM_032354)	-12	NM_032354	84314	Hs.513933	NM_032354		TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
19-PTNLD28-TUMOR_peak_78311	chr4	185569743	185570061	+	5.91105	NA	promoter-TSS (NM_152683)	promoter-TSS (NM_152683)	727	NM_032991	836	Hs.141125	NM_004346	HPRD:02799	CASP3	CPP32|CPP32B|SCA-1	caspase 3, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_87454	chr6	41748666	41749030	+	5.91105	NA	intron (NM_013397, intron 1 of 7)	intron (NM_013397, intron 1 of 7)	348	NM_013397	29964	Hs.715653	NM_013397	HPRD:12884	PRICKLE4	C6orf49|OBTP|OEBT|TOMM6	prickle homolog 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_42319	chr17	49244479	49244629	+	5.91105	NA	intron (NM_001198682, intron 2 of 3)	CpG	471	NM_001018138	4831	Hs.463456	NM_002512	HPRD:01132	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_44647	chr18	12308248	12308355	+	5.91105	NA	promoter-TSS (NM_032525)	promoter-TSS (NM_032525)	44	NM_032525	84617	Hs.193491	NM_032525	HPRD:11349	TUBB6	HsT1601|TUBB-5	tubulin, beta 6 class V	protein-coding
19-PTNLD28-TUMOR_peak_105495	chr9	115833038	115833151	+	5.91056	NA	Intergenic	CpG	-14023	NM_001282515	7539	Hs.150406	NM_003408	HPRD:04258	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_64155	chr22	16202066	16202190	+	5.91056	NA	Intergenic	Intergenic	-9119	NR_122113	503637	Hs.744284	NR_122113		DUXAP8	-	double homeobox A pseudogene 8	pseudo
19-PTNLD28-TUMOR_peak_93789	chr7	86848648	86848818	+	5.90722	NA	intron (NM_024315, intron 1 of 3)	intron (NM_024315, intron 1 of 3)	298	NM_024315	79161	Hs.619593	NM_024315	HPRD:12911	TMEM243	C7orf23|MM-TRAG	transmembrane protein 243, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_46630	chr19	2051179	2051304	+	5.90417	NA	promoter-TSS (NM_017572)	promoter-TSS (NM_017572)	2	NM_199054	2872	Hs.515032	NM_017572	HPRD:05459	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_66937	chr3	16109637	16109741	+	5.90417	NA	Intergenic	LTR16A1|LTR|ERVL	-106495	NM_054110	117248	Hs.411308	NM_054110	HPRD:13563	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_107818	chrX	23825837	23825930	+	5.90417	NA	Intergenic	Intergenic	24608	NR_027783	6303	Hs.28491	NM_002970	HPRD:02431	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_6575	chr1	149194508	149194610	+	5.90417	NA	Intergenic	Intergenic	-84834	NR_104217	101929780	Hs.534675	NR_104217		NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family, member 25, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_66814	chr3	14339227	14339425	+	5.90417	NA	Intergenic	CpG	54742	NR_110135	101927565	Hs.306905	NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
19-PTNLD28-TUMOR_peak_4282	chr1	68805329	68805461	+	5.90417	NA	Intergenic	Intergenic	-107111	NM_024911	79971	Hs.647659	NM_024911	HPRD:10980	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
19-PTNLD28-TUMOR_peak_7701	chr1	161441663	161441800	+	5.90217	NA	Intergenic	CpG	-33474	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_103525	chr9	68413114	68413253	+	5.90040	NA	Intergenic	LSAU|Satellite|Satellite	41192	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_104409	chr9	91150176	91150387	+	5.89781	NA	5' UTR (NM_145283, exon 1 of 3)	5' UTR (NM_145283, exon 1 of 3)	265	NM_001161625	158046	Hs.734507	NM_145283	HPRD:12938	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_67341	chr3	30399606	30399799	+	5.89674	NA	Intergenic	Intergenic	-248292	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_106538	chr9	135644794	135644923	+	5.89674	NA	intron (NM_152572, intron 11 of 12)	intron (NM_152572, intron 11 of 12)	-99070	NM_022779	64794	Hs.660767	NM_022779	HPRD:10860	DDX31	PPP1R25	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	protein-coding
19-PTNLD28-TUMOR_peak_19549	chr11	67706629	67706772	+	5.89674	NA	Intergenic	Intergenic	64895	NM_030930	81622	Hs.502989	NM_030930	HPRD:12191	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_22803	chr12	6845230	6845355	+	5.89674	NA	Intergenic	L1MD2|LINE|L1	11843	NM_001164093	50813	Hs.530823	NM_016319	HPRD:16736	COPS7A	CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding
19-PTNLD28-TUMOR_peak_24494	chr12	53969693	53969891	+	5.89674	NA	intron (NR_073163, intron 2 of 12)	intron (NR_073163, intron 2 of 12)	49988	NM_001206683	11016	Hs.12286	NM_006856	HPRD:06968	ATF7	ATFA	activating transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_25397	chr12	77459743	77459872	+	5.89674	NA	promoter-TSS (NM_203394)	promoter-TSS (NM_203394)	-447	NM_203394	144455	Hs.416375	NM_203394	HPRD:10929	E2F7	-	E2F transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_402	chr1	6694848	6694979	+	5.89674	NA	3' UTR (NM_018198, exon 16 of 16)	3' UTR (NM_018198, exon 16 of 16)	9703	NM_001195752	90326	Hs.689006	NM_138350	HPRD:18178	THAP3	-	THAP domain containing, apoptosis associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_61412	chr20	44859491	44859582	+	5.89674	NA	intron (NM_021248, intron 3 of 11)	MIRb|SINE|MIR	77601	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_79156	chr5	17189632	17189738	+	5.89674	NA	intron (NR_027253, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	-27247	NM_001271606	10409	Hs.201641	NM_006317	HPRD:08389	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50766	chr2	1004944	1005251	+	5.89674	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	58543	NM_018968	54221	Hs.595069	NM_018968	HPRD:16374	SNTG2	G2SYN|SYN5	syntrophin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_297	chr1	3612316	3612452	+	5.89674	NA	intron (NM_001126241, intron 1 of 10)	L2b|LINE|L2	-2226	NM_001204192	7161	Hs.192132	NM_005427	HPRD:03587	TP73	P73	tumor protein p73	protein-coding
19-PTNLD28-TUMOR_peak_23366	chr12	21682064	21682238	+	5.89674	NA	intron (NM_030572, intron 5 of 5)	intron (NM_030572, intron 5 of 5)	2895	NM_030572	80763	Hs.130692	NM_030572		SPX	C12orf39	spexin hormone	protein-coding
19-PTNLD28-TUMOR_peak_19891	chr11	72484443	72484547	+	5.89674	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-10080	NR_039841	100616410		NR_039841	miRBase:MI0017325	MIR4692	-	microRNA 4692	ncRNA
19-PTNLD28-TUMOR_peak_50291	chr19	54871144	54871385	+	5.89674	NA	intron (NM_001289023, intron 3 of 8)	intron (NM_001289023, intron 3 of 8)	5457	NM_021706	3903	Hs.572535	NM_002287	HPRD:04292	LAIR1	CD305|LAIR-1	leukocyte-associated immunoglobulin-like receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_91986	chr7	35042983	35043071	+	5.89674	NA	intron (NM_015283, intron 6 of 21)	intron (NM_015283, intron 6 of 21)	34626	NM_015283	23333	Hs.408623	NM_015283	ENSG00000173852	DPY19L1	-	dpy-19-like 1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_43009	chr17	64503836	64503976	+	5.89674	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-90934	NR_110822	101928001	Hs.650730	NR_110822	ENSG00000264630	LOC101928001	-	uncharacterized LOC101928001	ncRNA
19-PTNLD28-TUMOR_peak_62308	chr20	56256078	56256172	+	5.89674	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	9555	NM_001255976	56937	Hs.517155	NM_020182	HPRD:09415	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
19-PTNLD28-TUMOR_peak_102350	chr9	18448239	18448371	+	5.89674	NA	Intergenic	Intergenic	-25774	NM_052866	92949	Hs.741483	NM_052866	HPRD:16462	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS-like 1	protein-coding
19-PTNLD28-TUMOR_peak_31290	chr14	75114356	75114447	+	5.89674	NA	Intergenic	Intergenic	-35367	NM_000428	4053	Hs.512776	NM_000428	HPRD:03650	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_72916	chr3	186021797	186021931	+	5.89674	NA	intron (NM_001080744, intron 3 of 23)	intron (NM_001080744, intron 3 of 23)	58159	NM_001080745	1608	Hs.683449	NM_001346	HPRD:03510	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase, gamma 90kDa	protein-coding
19-PTNLD28-TUMOR_peak_30833	chr14	65696449	65696643	+	5.89569	NA	Intergenic	Intergenic	-7481	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
19-PTNLD28-TUMOR_peak_67361	chr3	30735156	30735244	+	5.89569	NA	3' UTR (NM_003242, exon 7 of 7)	3' UTR (NM_003242, exon 7 of 7)	87206	NM_003242	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_59477	chr20	1970378	1970514	+	5.89569	NA	intron (NM_001190899, intron 1 of 2)	MIR3|SINE|MIR	3006	NM_001190892	5173	Hs.22584	NM_024411	HPRD:08838	PDYN	ADCA|PENKB|SCA23	prodynorphin	protein-coding
19-PTNLD28-TUMOR_peak_101242	chr8	136271762	136271850	+	5.89569	NA	intron (NR_120396, intron 1 of 4)	L1PA2|LINE|L1	25432	NR_120396	286094	Hs.440978	NR_026706	ENSG00000254083	LOC286094	-	uncharacterized LOC286094	ncRNA
19-PTNLD28-TUMOR_peak_21189	chr11	112336325	112336526	+	5.89569	NA	Intergenic	Intergenic	-16530	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
19-PTNLD28-TUMOR_peak_16573	chr11	1474897	1475108	+	5.89569	NA	intron (NM_001256629, intron 15 of 19)	intron (NM_001256629, intron 15 of 19)	27114	NM_053005	81532	Hs.370360	NM_053005		MOB2	HCCA2	MOB kinase activator 2	protein-coding
19-PTNLD28-TUMOR_peak_90452	chr6	165201281	165201512	+	5.89569	NA	Intergenic	L1PA5|LINE|L1	521715	NM_144980	168090	Hs.144734	NM_144980	HPRD:12844	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
19-PTNLD28-TUMOR_peak_63179	chr21	33778776	33779045	+	5.89569	NA	Intergenic	Intergenic	-5835	NM_001286556	59271	Hs.208358	NM_058187	HPRD:10760	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|SUE21	eva-1 homolog C (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_55681	chr2	130886657	130887013	+	5.89569	NA	promoter-TSS (NM_001099771)	promoter-TSS (NM_001099771)	-40	NM_001099771	728378	Hs.580547	NM_001099771	ENSG00000196604	POTEF	A26C1B|ACTB|POTE2alpha|POTEACTIN	POTE ankyrin domain family, member F	protein-coding
19-PTNLD28-TUMOR_peak_55277	chr2	119916337	119916495	+	5.89569	NA	promoter-TSS (NM_182528)	promoter-TSS (NM_182528)	55	NM_182528	165257	Hs.433493	NM_182528	HPRD:12713	C1QL2	C1QTNF10|CTRP10	complement component 1, q subcomponent-like 2	protein-coding
19-PTNLD28-TUMOR_peak_33935	chr15	63775295	63775383	+	5.89569	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-21371	NR_046341	9960	Hs.458499	NM_006537		USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_38424	chr16	68526469	68526626	+	5.89263	NA	Intergenic	Intergenic	-44138	NM_018667	55512	Hs.368421	NM_018667	HPRD:16154	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	protein-coding
19-PTNLD28-TUMOR_peak_94155	chr7	98249245	98249493	+	5.89263	NA	intron (NM_002523, intron 2 of 4)	intron (NM_002523, intron 2 of 4)	2772	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_14990	chr10	96162441	96162813	+	5.89263	NA	exon (NM_015188, exon 1 of 13)	exon (NM_015188, exon 1 of 13)	441	NM_015188	23232	Hs.500598	NM_015188	ENSG00000108239	TBC1D12	-	TBC1 domain family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_2309	chr1	35228487	35228671	+	5.89263	NA	3' UTR (NM_153212, exon 2 of 2)	3' UTR (NM_153212, exon 2 of 2)	3237	NM_153212	127534	Hs.351203	NM_153212	HPRD:05666	GJB4	CX30.3|EKV	gap junction protein, beta 4, 30.3kDa	protein-coding
19-PTNLD28-TUMOR_peak_42196	chr17	48164887	48165078	+	5.89217	NA	intron (NM_005501, intron 23 of 24)	intron (NM_005501, intron 23 of 24)	-7119	NM_001199898	5164	Hs.256667	NM_002611	HPRD:03955	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase, isozyme 2	protein-coding
19-PTNLD28-TUMOR_peak_23051	chr12	11730945	11731033	+	5.89217	NA	Intergenic	Intergenic	30025	NR_033890	338817	Hs.733066	NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
19-PTNLD28-TUMOR_peak_103736	chr9	72668884	72669019	+	5.89217	NA	intron (NM_153267, intron 2 of 13)	L2b|LINE|L2	10454	NM_153267	256691	Hs.547172	NM_153267	HPRD:14353	MAMDC2	-	MAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_3508	chr1	52834138	52834457	+	5.88465	NA	Intergenic	CpG	-2420	NM_032449	200014	Hs.591451	NM_032449	HPRD:12393	CC2D1B	-	coiled-coil and C2 domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_46393	chr18	77267239	77267391	+	5.88465	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	107041	NM_172389	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_8325	chr1	175160969	175161108	+	5.88306	NA	intron (NM_001162894, intron 1 of 3)	intron (NM_001162894, intron 1 of 3)	911	NM_001162895	9674	Hs.518138	NM_014656	HPRD:13776	KIAA0040	-	KIAA0040	protein-coding
19-PTNLD28-TUMOR_peak_36823	chr16	23159937	23160166	+	5.88306	NA	exon (NM_020718, exon 1 of 16)	exon (NM_020718, exon 1 of 16)	540	NM_020718	57478	Hs.183817	NM_020718	HPRD:15634	USP31	-	ubiquitin specific peptidase 31	protein-coding
19-PTNLD28-TUMOR_peak_10528	chr1	226925612	226925781	+	5.88267	NA	intron (NM_002221, intron 1 of 7)	CpG	1180	NM_002221	3707	Hs.528087	NM_002221	HPRD:00942	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
19-PTNLD28-TUMOR_peak_64058	chr21	46875307	46875602	+	5.88267	NA	promoter-TSS (NM_030582)	promoter-TSS (NM_030582)	30	NM_030582	80781	Hs.517356	NM_030582	HPRD:00382	COL18A1	KNO|KNO1|KS	collagen, type XVIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_106135	chr9	129606541	129606660	+	5.88267	NA	Intergenic	Intergenic	-16344	NM_001099270	403341	Hs.177633	NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
19-PTNLD28-TUMOR_peak_106122	chr9	129426166	129426474	+	5.88267	NA	intron (NM_002316, intron 2 of 7)	intron (NM_002316, intron 2 of 7)	49598	NM_002316	4010	Hs.129133	NM_002316	HPRD:03986	LMX1B	LMX1.2|NPS1	LIM homeobox transcription factor 1, beta	protein-coding
19-PTNLD28-TUMOR_peak_65101	chr22	31090504	31090776	+	5.88084	NA	promoter-TSS (NM_001282739)	promoter-TSS (NM_001282739)	-153	NM_001282739	23762	Hs.517546	NM_030758	HPRD:09471	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_1968	chr1	30874336	30874607	+	5.88084	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-317148	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21575	chr11	119223637	119223942	+	5.88084	NA	Intergenic	Intergenic	-6406	NM_031433	83552	Hs.632102	NM_031433	HPRD:06941	MFRP	MCOP5|NNO2|RD6	membrane frizzled-related protein	protein-coding
19-PTNLD28-TUMOR_peak_37692	chr16	48808215	48808363	+	5.88084	NA	Intergenic	L1PA2|LINE|L1	-164169	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_3726	chr1	56392684	56392896	+	5.88084	NA	Intergenic	LTR28|LTR|ERV1	652467	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_20049	chr11	74944834	74944926	+	5.88084	NA	Intergenic	Intergenic	-7070	NM_001195528	100507050	Hs.577323	NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein-like	protein-coding
19-PTNLD28-TUMOR_peak_21658	chr11	120553690	120553944	+	5.88084	NA	intron (NM_001282470, intron 2 of 19)	L2b|LINE|L2	118622	NM_001282473	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_105875	chr9	124113676	124113803	+	5.88084	NA	intron (NR_073037, intron 5 of 7)	intron (NR_073037, intron 5 of 7)	18843	NR_073037	2040	Hs.253903	NM_004099	HPRD:00585	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
19-PTNLD28-TUMOR_peak_8735	chr1	183192686	183192818	+	5.88084	NA	intron (NM_018891, intron 7 of 21)	L2c|LINE|L2	37578	NM_018891	3918	Hs.591484	NM_005562	HPRD:01031	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2	laminin, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_13556	chr10	50727896	50728039	+	5.88084	NA	intron (NM_001277058, intron 5 of 5)	intron (NM_001277058, intron 5 of 5)	4360	NM_170753	267004	Hs.49063	NM_170753	HPRD:17838	PGBD3	-	piggyBac transposable element derived 3	protein-coding
19-PTNLD28-TUMOR_peak_26320	chr12	111751697	111751876	+	5.88084	NA	intron (NM_015267, intron 16 of 21)	intron (NM_015267, intron 16 of 21)	9840	NR_106818	102465455		NR_106818		MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
19-PTNLD28-TUMOR_peak_108639	chrX	68456659	68456762	+	5.88084	NA	Intergenic	Intergenic	57310	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
19-PTNLD28-TUMOR_peak_103211	chr9	42314387	42314512	+	5.88084	NA	Intergenic	Intergenic	-53854	NM_001012421	441430	Hs.632663	NM_001012421	HPRD:18652	ANKRD20A2	-	ankyrin repeat domain 20 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_102858	chr9	35617299	35617401	+	5.88084	NA	intron (NM_001782, intron 2 of 8)	intron (NM_001782, intron 2 of 8)	1074	NM_001782	971	Hs.116481	NM_001782	HPRD:00118	CD72	CD72b|LYB2	CD72 molecule	protein-coding
19-PTNLD28-TUMOR_peak_56982	chr2	173158845	173158950	+	5.88084	NA	Intergenic	Intergenic	-133417	NM_000210	3655	Hs.133397	NM_000210	HPRD:00945	ITGA6	CD49f|ITGA6B|VLA-6	integrin, alpha 6	protein-coding
19-PTNLD28-TUMOR_peak_98205	chr8	37613683	37613823	+	5.88084	NA	3' UTR (NM_007175, exon 12 of 12)	3' UTR (NM_007175, exon 12 of 12)	-6348	NM_007198	11212	Hs.304792	NM_007198	HPRD:16060	PROSC	-	proline synthetase co-transcribed homolog (bacterial)	protein-coding
19-PTNLD28-TUMOR_peak_96569	chr7	153952466	153952747	+	5.88084	NA	intron (NM_001290253, intron 1 of 5)	intron (NM_001290253, intron 1 of 5)	-49691	NM_001936	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_23721	chr12	34225175	34225314	+	5.88084	NA	Intergenic	L1PA3|LINE|L1	50028	NM_032834	84920	Hs.102971	NM_032834		ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_61577	chr20	46782368	46782630	+	5.88084	NA	Intergenic	Intergenic	-163638	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
19-PTNLD28-TUMOR_peak_84467	chr5	178957745	178957865	+	5.88084	NA	Intergenic	CpG	-19757	NM_025158	80230	Hs.306769	NM_025158	HPRD:15282	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43001	chr17	64363365	64363504	+	5.88084	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	49538	NR_110822	101928001	Hs.650730	NR_110822	ENSG00000264630	LOC101928001	-	uncharacterized LOC101928001	ncRNA
19-PTNLD28-TUMOR_peak_84755	chr6	1743648	1743741	+	5.88084	NA	intron (NM_001500, intron 7 of 10)	AluYc|SINE|Alu	133013	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_46474	chr19	267429	267535	+	5.88084	NA	Intergenic	CpG	23687	NM_177543	8612	Hs.465506	NM_003712	HPRD:06180	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
19-PTNLD28-TUMOR_peak_74804	chr4	25528741	25528855	+	5.88084	NA	Intergenic	MER49|LTR|ERV1	-128637	NM_001177998	10568	Hs.479372	NM_006424	HPRD:07251	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb	solute carrier family 34 (type II sodium/phosphate contransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_37773	chr16	50610193	50610406	+	5.88084	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	28058	NM_033119	85407	Hs.187578	NM_033119		NKD1	Naked1	naked cuticle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_97154	chr8	11297611	11297708	+	5.88084	NA	intron (NM_053279, intron 2 of 2)	intron (NM_053279, intron 2 of 2)	26617	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_91311	chr7	12610314	12610578	+	5.88084	NA	exon (NM_001112706, exon 1 of 16)	exon (NM_001112706, exon 1 of 16)	243	NM_001112706	85477	Hs.633359	NM_033128	HPRD:11539	SCIN	-	scinderin	protein-coding
19-PTNLD28-TUMOR_peak_23861	chr12	43466273	43466639	+	5.88084	NA	Intergenic	Intergenic	-426156	NR_110042	101927058	Hs.434238	NR_110042	ENSG00000257510	LOC101927058	-	uncharacterized LOC101927058	ncRNA
19-PTNLD28-TUMOR_peak_53612	chr2	75426776	75426864	+	5.88084	NA	promoter-TSS (NM_001058)	promoter-TSS (NM_001058)	-175	NM_001058	6869	Hs.633301	NM_001058	HPRD:01208	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_83599	chr5	159457798	159457977	+	5.88084	NA	intron (NM_003314, intron 2 of 7)	intron (NM_003314, intron 2 of 7)	21780	NM_003314	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_83254	chr5	150472446	150472541	+	5.87813	NA	Intergenic	MIR|SINE|MIR	-5272	NM_001252390	10318	Hs.355141	NM_006058	HPRD:09216	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_1816	chr1	28157577	28157826	+	5.87813	NA	5' UTR (NM_002713, exon 1 of 6)	5' UTR (NM_002713, exon 1 of 6)	376	NM_138558	5511	Hs.533474	NM_002713	HPRD:04028	PPP1R8	ARD-1|ARD1|NIPP-1|NIPP1|PRO2047	protein phosphatase 1, regulatory subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_95755	chr7	139141961	139142148	+	5.87813	NA	intron (NM_198508, intron 3 of 4)	intron (NM_198508, intron 3 of 4)	26403	NM_198508	346689	Hs.17572	NM_198508		KLRG2	CLEC15B	killer cell lectin-like receptor subfamily G, member 2	protein-coding
19-PTNLD28-TUMOR_peak_64393	chr22	19958164	19958539	+	5.87813	NA	TTS (NM_001135162)	TTS (NM_001135162)	7075	NR_039918	100616414		NR_039918		MIR4761	-	microRNA 4761	ncRNA
19-PTNLD28-TUMOR_peak_62456	chr20	60639367	60639503	+	5.87813	NA	intron (NM_003185, intron 1 of 14)	CpG	1431	NM_003185	6874	Hs.18857	NM_003185	HPRD:11797	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_73854	chr4	1713342	1713560	+	5.87813	NA	intron (NM_006527, intron 2 of 7)	CpG	579	NM_006527	7884	Hs.298345	NM_006527	HPRD:03884	SLBP	HBP	stem-loop binding protein	protein-coding
19-PTNLD28-TUMOR_peak_56197	chr2	148393984	148394072	+	5.87813	NA	Intergenic	Intergenic	-208058	NM_001278580	92	Hs.470174	NM_001616	HPRD:00025	ACVR2A	ACTRII|ACVR2	activin A receptor, type IIA	protein-coding
19-PTNLD28-TUMOR_peak_50978	chr2	9526576	9526683	+	5.87813	NA	intron (NM_003887, intron 21 of 27)	intron (NM_003887, intron 21 of 27)	37014	NM_004763	9270	Hs.467662	NM_004763	HPRD:06194	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin beta 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2190	chr1	33438498	33438668	+	5.87298	NA	Intergenic	CpG	-8169	NM_001127361	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_64559	chr22	21852748	21852956	+	5.87298	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	18928	NR_003700	375133	Hs.448225	NR_003700	HPRD:14194	PI4KAP2	-	phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_18807	chr11	60681534	60681627	+	5.87298	NA	5' UTR (NM_024092, exon 1 of 4)	5' UTR (NM_024092, exon 1 of 4)	209	NM_024092	79073	Hs.13662	NM_024092	HPRD:14687	TMEM109	-	transmembrane protein 109	protein-coding
19-PTNLD28-TUMOR_peak_18884	chr11	61395740	61395883	+	5.86843	NA	intron (NR_002775, intron 2 of 4)	intron (NR_002775, intron 2 of 4)	13303	NR_002775	113157	Hs.502733	NR_002775	ENSG00000243742	RPLP0P2	RPLP0L2|RPLP0_3_1146	ribosomal protein, large, P0 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_96302	chr7	150497673	150497880	+	5.86843	NA	promoter-TSS (NM_001101311)	promoter-TSS (NM_001101311)	-78	NM_018487	55365	Hs.647116	NM_018487	HPRD:13635	TMEM176A	GS188|HCA112	transmembrane protein 176A	protein-coding
19-PTNLD28-TUMOR_peak_109227	chrX	114795932	114796104	+	5.86609	NA	intron (NM_001282337, intron 1 of 17)	CpG	841	NM_005032	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_57993	chr2	206566380	206566490	+	5.86609	NA	intron (NM_003872, intron 2 of 16)	Tigger15a|DNA|TcMar-Tigger	19211	NM_201264	8828	Hs.471200	NM_003872	HPRD:03643	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
19-PTNLD28-TUMOR_peak_24730	chr12	57178349	57178440	+	5.86609	NA	intron (NM_003725, intron 3 of 4)	SVA_D|Other|Other	21392	NM_003725	8630	Hs.524513	NM_003725	HPRD:09431	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
19-PTNLD28-TUMOR_peak_35218	chr15	91022562	91022664	+	5.86609	NA	intron (NM_003870, intron 26 of 37)	intron (NM_003870, intron 26 of 37)	-50505	NM_001042574	64784	Hs.567572	NM_022769	HPRD:13384	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_102494	chr9	22212050	22212178	+	5.86609	NA	Intergenic	Intergenic	-202802	NM_078487	1030	Hs.72901	NM_004936	HPRD:02696	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
19-PTNLD28-TUMOR_peak_14410	chr10	77191015	77191462	+	5.86609	NA	Intergenic	CpG	22323	NR_110304	101929234	Hs.694695	NR_110304	ENSG00000272692	LOC101929234	-	uncharacterized LOC101929234	ncRNA
19-PTNLD28-TUMOR_peak_106351	chr9	132145393	132145500	+	5.86609	NA	Intergenic	Intergenic	46244	NR_120686	100506119	Hs.624047	NR_120685		LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
19-PTNLD28-TUMOR_peak_61523	chr20	46122415	46122503	+	5.86609	NA	Intergenic	Intergenic	-8142	NM_001174087	8202	Hs.592142	NM_006534	HPRD:03570	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
19-PTNLD28-TUMOR_peak_3653	chr1	54965131	54965505	+	5.86609	NA	Intergenic	CpG	-48489	NM_015547	26027	Hs.745173	NM_015547	HPRD:07075	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
19-PTNLD28-TUMOR_peak_7494	chr1	158975084	158975283	+	5.86553	NA	Intergenic	Intergenic	-4499	NM_005531	3428	Hs.380250	NM_005531	HPRD:00969	IFI16	IFNGIP1|PYHIN2	interferon, gamma-inducible protein 16	protein-coding
19-PTNLD28-TUMOR_peak_97101	chr8	9912636	9912776	+	5.86303	NA	intron (NM_012331, intron 1 of 5)	intron (NM_012331, intron 1 of 5)	927	NM_001135670	4482	Hs.490981	NM_012331	HPRD:03152	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
19-PTNLD28-TUMOR_peak_106607	chr9	136658272	136658443	+	5.86303	NA	intron (NM_003371, intron 11 of 26)	intron (NM_003371, intron 11 of 26)	-53280	NM_007101	1757	Hs.198003	NM_007101	HPRD:06831	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_107933	chrX	37706173	37706414	+	5.86303	NA	intron (NM_006520, intron 1 of 4)	intron (NM_006520, intron 1 of 4)	596	NM_006520	6990	Hs.446392	NM_006520	HPRD:02249	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein, light chain, Tctex-type 3	protein-coding
19-PTNLD28-TUMOR_peak_16241	chr10	129948593	129948681	+	5.86303	NA	Intergenic	CpG	-24169	NM_001145966	4288	Hs.80976	NM_002417	HPRD:08902	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
19-PTNLD28-TUMOR_peak_65781	chr22	43263787	43263946	+	5.86303	NA	Intergenic	Intergenic	-10458	NM_014570	26286	Hs.685225	NM_014570	HPRD:06444	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
19-PTNLD28-TUMOR_peak_71642	chr3	149347681	149347792	+	5.86303	NA	intron (NM_015472, intron 2 of 6)	AluJo|SINE|Alu	28076	NM_001168280	25937	Hs.477921	NM_015472	HPRD:09580	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_50922	chr2	8597910	8598120	+	5.86303	NA	Intergenic	Intergenic	125907	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LOC101929567	-	uncharacterized LOC101929567	ncRNA
19-PTNLD28-TUMOR_peak_90331	chr6	159458940	159459222	+	5.86303	NA	TTS (NM_138810)	TTS (NM_138810)	4304	NM_001278733	117289	Hs.529984	NM_054114	HPRD:18143	TAGAP	ARHGAP47|IDDM21|TAGAP1	T-cell activation RhoGTPase activating protein	protein-coding
19-PTNLD28-TUMOR_peak_92248	chr7	44080169	44080346	+	5.86196	NA	promoter-TSS (NR_024116)	promoter-TSS (NR_024116)	-35	NR_024116	401331	Hs.530089	NR_024116		RASA4CP	RASA4P	RAS p21 protein activator 4C, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64139	chr21	48108431	48108546	+	5.86161	NA	Intergenic	LTR10C|LTR|ERV1	52981	NM_206962	3275	Hs.154163	NM_001535	HPRD:09060	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_39175	chr16	85388369	85388550	+	5.86064	NA	Intergenic	Intergenic	-48528	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_10533	chr1	226967459	226967582	+	5.86064	NA	Intergenic	Intergenic	-40644	NM_002221	3707	Hs.528087	NM_002221	HPRD:00942	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
19-PTNLD28-TUMOR_peak_60915	chr20	36540453	36540541	+	5.85371	NA	intron (NM_080607, intron 1 of 3)	MIR|SINE|MIR	8998	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_6481	chr1	147551593	147551689	+	5.85346	NA	Intergenic	LTR12C|LTR|ERV1	56451	NM_001101663	200030	Hs.721588	NM_183372	HPRD:14123	NBPF11	NBPF24	neuroblastoma breakpoint family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_14479	chr10	79632351	79632483	+	5.85343	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	53931	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_65744	chr22	42896408	42896533	+	5.85200	NA	promoter-TSS (NR_027786)	promoter-TSS (NR_027786)	-115	NR_027786	94009	Hs.360940	NM_170694	HPRD:10465	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase-like	pseudo
19-PTNLD28-TUMOR_peak_92514	chr7	50107767	50107890	+	5.85200	NA	intron (NM_007009, intron 3 of 7)	HERV15-int|LTR|ERV1	25032	NM_001159878	11055	Hs.388841	NM_007009	HPRD:18364	ZPBP	ZPBP1	zona pellucida binding protein	protein-coding
19-PTNLD28-TUMOR_peak_59388	chr20	442505	442763	+	5.85200	NA	intron (NR_111901, intron 1 of 9)	CpG	563	NR_111901	128637	Hs.590876	NM_144628	HPRD:15472	TBC1D20	C20orf140|WARBM4	TBC1 domain family, member 20	protein-coding
19-PTNLD28-TUMOR_peak_67460	chr3	33758698	33758792	+	5.85200	NA	intron (NM_015097, intron 1 of 38)	intron (NM_015097, intron 1 of 38)	960	NM_015097	23122	Hs.108614	NM_015097	HPRD:12054	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_106318	chr9	131709447	131709535	+	5.85200	NA	promoter-TSS (NM_015354)	promoter-TSS (NM_015354)	-481	NM_015354	23511	Hs.308340	NM_015354	HPRD:18582	NUP188	KIAA0169|hNup188	nucleoporin 188kDa	protein-coding
19-PTNLD28-TUMOR_peak_41751	chr17	42993800	42993888	+	5.85200	NA	promoter-TSS (NM_001131019)	promoter-TSS (NM_001131019)	-924	NM_001242376	2670	Hs.514227	NM_002055	HPRD:00675	GFAP	-	glial fibrillary acidic protein	protein-coding
19-PTNLD28-TUMOR_peak_92113	chr7	39830620	39830736	+	5.85200	NA	intron (NR_026999, intron 10 of 11)	intron (NR_026999, intron 10 of 11)	57511	NR_026999	349114	Hs.414183	NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
19-PTNLD28-TUMOR_peak_62459	chr20	60641644	60641740	+	5.85200	NA	promoter-TSS (NM_003185)	promoter-TSS (NM_003185)	-826	NM_003185	6874	Hs.18857	NM_003185	HPRD:11797	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_45557	chr18	45456547	45456904	+	5.84507	NA	intron (NM_001003652, intron 1 of 10)	CpG	245	NM_005901	4087	Hs.12253	NM_005901	HPRD:03221	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_17995	chr11	34380026	34380190	+	5.84507	NA	promoter-TSS (NM_145804)	promoter-TSS (NM_145804)	-553	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_20802	chr11	100557999	100558237	+	5.84501	NA	promoter-TSS (NM_152432)	promoter-TSS (NM_152432)	-289	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_87108	chr6	36599547	36599661	+	5.84501	NA	Intergenic	Intergenic	-9315	NR_037491	100500885		NR_037491	miRBase:MI0016433	MIR3925	-	microRNA 3925	ncRNA
19-PTNLD28-TUMOR_peak_5632	chr1	113685753	113685973	+	5.84501	NA	Intergenic	MER117|DNA|hAT-Charlie	63012	NR_038846	643441	Hs.124895	NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
19-PTNLD28-TUMOR_peak_85264	chr6	10317601	10317751	+	5.84365	NA	Intergenic	Intergenic	-94875	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_90063	chr6	151712933	151713068	+	5.84231	NA	promoter-TSS (NM_020861)	promoter-TSS (NM_020861)	-323	NM_020861	57621	Hs.520073	NM_020861	HPRD:10314	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_75806	chr4	77864275	77864549	+	5.84144	NA	Intergenic	MIR3|SINE|MIR	-6483	NM_018243	55752	Hs.128199	NM_018243	HPRD:08555	SEPT11	-	septin 11	protein-coding
19-PTNLD28-TUMOR_peak_68811	chr3	65470771	65470917	+	5.84144	NA	intron (NM_001033057, intron 3 of 22)	intron (NM_001033057, intron 3 of 22)	-408647	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36103	chr16	7651339	7651468	+	5.84144	NA	intron (NM_145893, intron 6 of 13)	intron (NM_145893, intron 6 of 13)	268652	NM_145893	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_59342	chr2	242843895	242844185	+	5.84144	NA	intron (NR_110220, intron 2 of 3)	CpG	20526	NR_110220	101927289	Hs.130180	NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
19-PTNLD28-TUMOR_peak_19763	chr11	70828551	70828735	+	5.84144	NA	intron (NM_012309, intron 3 of 22)	MER21C|LTR|ERVL	107199	NM_012309	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
19-PTNLD28-TUMOR_peak_32368	chr14	106004298	106004625	+	5.84144	NA	Intergenic	Intergenic	11508	NM_025268	80757	Hs.157527	NM_025268	HPRD:14652	TMEM121	hole	transmembrane protein 121	protein-coding
19-PTNLD28-TUMOR_peak_97153	chr8	11297390	11297517	+	5.84144	NA	intron (NM_053279, intron 2 of 2)	intron (NM_053279, intron 2 of 2)	26823	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_50209	chr19	53928330	53928441	+	5.84144	NA	Intergenic	Intergenic	-6842	NM_001289951	388561	Hs.433293	NM_001008401		ZNF761	ZNF468	zinc finger protein 761	protein-coding
19-PTNLD28-TUMOR_peak_55825	chr2	133246844	133246991	+	5.84144	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	72770	NM_001508	2863	Hs.432395	NM_001508	HPRD:04198	GPR39	-	G protein-coupled receptor 39	protein-coding
19-PTNLD28-TUMOR_peak_1265	chr1	20520824	20521034	+	5.84144	NA	TTS (NM_152376)	TTS (NM_152376)	-7950	NR_110078	101928017	Hs.550803	NR_110078		UBXN10-AS1	-	UBXN10 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_51421	chr2	20063200	20063443	+	5.84144	NA	Intergenic	Intergenic	-5294	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
19-PTNLD28-TUMOR_peak_29935	chr14	36526809	36526899	+	5.84144	NA	Intergenic	L2b|LINE|L2	-12779	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
19-PTNLD28-TUMOR_peak_27478	chr13	24553626	24553918	+	5.84144	NA	promoter-TSS (NR_104595)	promoter-TSS (NR_104595)	7	NM_001286792	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_89322	chr6	123793236	123793546	+	5.84144	NA	TTS (NR_110844)	TTS (NR_110844)	32642	NR_110844	101927990	Hs.660877	NR_110844		LOC101927990	-	uncharacterized LOC101927990	ncRNA
19-PTNLD28-TUMOR_peak_44910	chr18	21130953	21131195	+	5.84144	NA	intron (NM_000271, intron 10 of 24)	intron (NM_000271, intron 10 of 24)	35507	NM_000271	4864	Hs.464779	NM_000271	HPRD:09622	NPC1	NPC	Niemann-Pick disease, type C1	protein-coding
19-PTNLD28-TUMOR_peak_4550	chr1	84326597	84326837	+	5.84144	NA	promoter-TSS (NR_119374)	promoter-TSS (NR_119374)	-38	NR_119375	101927587	Hs.621230	NR_119375	ENSG00000233008	LOC101927587	-	uncharacterized LOC101927587	ncRNA
19-PTNLD28-TUMOR_peak_65921	chr22	45889321	45889585	+	5.84144	NA	Intergenic	Intergenic	-9266	NM_006486	2192	Hs.24601	NM_001996	HPRD:00629	FBLN1	FBLN|FIBL1	fibulin 1	protein-coding
19-PTNLD28-TUMOR_peak_19793	chr11	71338759	71338847	+	5.84144	NA	Intergenic	Intergenic	-44882	NM_001005405	440051	Hs.679617	NM_001005405	HPRD:17248	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
19-PTNLD28-TUMOR_peak_67204	chr3	24431288	24431399	+	5.84144	NA	intron (NM_001128176, intron 1 of 10)	intron (NM_001128176, intron 1 of 10)	-104235	NR_046244	644990	Hs.631912	NR_046244		THRB-AS1	-	THRB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57629	chr2	197451584	197451676	+	5.84144	NA	intron (NM_020760, intron 1 of 28)	Charlie25|DNA|hAT-Charlie	5705	NM_020760	57520	Hs.654742	NM_020760	HPRD:17099	HECW2	NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_59932	chr20	16205330	16205609	+	5.84144	NA	Intergenic	Intergenic	348610	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_9240	chr1	201505850	201505969	+	5.84038	NA	Intergenic	Intergenic	16877	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_77381	chr4	144258265	144258742	+	5.84038	NA	intron (NM_207123, intron 1 of 10)	CpG-20152	520	NM_002039	2549	Hs.80720	NM_002039	HPRD:05116	GAB1	-	GRB2-associated binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_98203	chr8	37594545	37594854	+	5.84038	NA	intron (NM_001003790, intron 1 of 6)	CpG	502	NM_001003790	11160	Hs.705490	NM_007175	HPRD:15437	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18	ER lipid raft associated 2	protein-coding
19-PTNLD28-TUMOR_peak_29017	chr13	109925867	109926077	+	5.84038	NA	Intergenic	Intergenic	-106321	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87501	chr6	42284277	42284497	+	5.83694	NA	intron (NM_033502, intron 3 of 17)	LTR8A|LTR|ERV1	-98754	NM_018141	55173	Hs.380887	NM_018141	HPRD:14775	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
19-PTNLD28-TUMOR_peak_58061	chr2	208091598	208091763	+	5.83694	NA	intron (NR_110283, intron 3 of 3)	intron (NR_110283, intron 3 of 3)	27360	NR_110283	101927865	Hs.574609	NR_110283	ENSG00000234902	LOC101927865	-	uncharacterized LOC101927865	ncRNA
19-PTNLD28-TUMOR_peak_56922	chr2	171734737	171734923	+	5.83694	NA	Intergenic	Intergenic	-50118	NM_001201428	26003	Hs.431317	NM_015530	HPRD:08303	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2, 55kDa	protein-coding
19-PTNLD28-TUMOR_peak_103650	chr9	70971535	70971699	+	5.83694	NA	promoter-TSS (NM_021965)	promoter-TSS (NM_021965)	-198	NM_021965	5239	Hs.307835	NM_021965	HPRD:02990	PGM5	PGMRP	phosphoglucomutase 5	protein-coding
19-PTNLD28-TUMOR_peak_66093	chr22	50622551	50622697	+	5.83694	NA	Intergenic	Intergenic	-1736	NM_025204	80305	Hs.517731	NM_025204	HPRD:11450	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
19-PTNLD28-TUMOR_peak_77621	chr4	152985123	152985299	+	5.83694	NA	Intergenic	Intergenic	-36694	NR_121628	100996286	Hs.322462	NR_121627	ENSG00000245954	LOC100996286	-	uncharacterized LOC100996286	ncRNA
19-PTNLD28-TUMOR_peak_94626	chr7	104294090	104294188	+	5.83694	NA	intron (NM_199000, intron 1 of 2)	intron (NM_199000, intron 1 of 2)	150400	NR_034141	645591	Hs.658835	NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11797	chr10	5455080	5455278	+	5.83694	NA	intron (NM_001047160, intron 1 of 11)	intron (NM_001047160, intron 1 of 11)	665	NM_001047160	10276	Hs.25155	NM_005863	HPRD:07342	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
19-PTNLD28-TUMOR_peak_18267	chr11	44722348	44722536	+	5.83694	NA	Intergenic	Intergenic	-63534	NM_130783	90139	Hs.385634	NM_130783	HPRD:17435	TSPAN18	TSPAN	tetraspanin 18	protein-coding
19-PTNLD28-TUMOR_peak_43950	chr17	79230580	79230675	+	5.83417	NA	intron (NM_138570, intron 11 of 13)	intron (NM_138570, intron 11 of 13)	17516	NM_001086521	284184	Hs.356545	NM_001086521	ENSG00000224877	C17orf89	-	chromosome 17 open reading frame 89	protein-coding
19-PTNLD28-TUMOR_peak_107611	chrX	14045194	14045401	+	5.83417	NA	intron (NM_017856, intron 1 of 4)	intron (NM_017856, intron 1 of 4)	2738	NM_017856	54960	Hs.592237	NM_017856	HPRD:06533	GEMIN8	FAM51A1	gem (nuclear organelle) associated protein 8	protein-coding
19-PTNLD28-TUMOR_peak_85968	chr6	24495767	24495966	+	5.83417	NA	intron (NM_170740, intron 1 of 10)	intron (NM_170740, intron 1 of 10)	669	NM_170740	7915	Hs.371723	NM_001080	HPRD:08361	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_60433	chr20	30307262	30307393	+	5.83146	NA	intron (NM_001191, intron 2 of 2)	intron (NM_001191, intron 2 of 2)	3329	NM_138578	598	Hs.516966	NM_001191	HPRD:02497	BCL2L1	BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS	BCL2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_102329	chr9	17135388	17135630	+	5.82951	NA	intron (NM_001114395, intron 1 of 6)	CpG	520	NM_001114395	54875	Hs.435381	NM_017738	HPRD:10800	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein, centrosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_72990	chr3	186819185	186819808	+	5.82951	NA	Intergenic	L1MA7|LINE|L1	37767	NM_052969	116832	Hs.647900	NM_052969	HPRD:09610	RPL39L	RPL39L1	ribosomal protein L39-like	protein-coding
19-PTNLD28-TUMOR_peak_7899	chr1	165362595	165362691	+	5.82951	NA	Intergenic	Intergenic	31578	NM_001256571	6258	Hs.26550	NM_006917	HPRD:01579	RXRG	NR2B3|RXRC	retinoid X receptor, gamma	protein-coding
19-PTNLD28-TUMOR_peak_20182	chr11	76758334	76758485	+	5.82951	NA	Intergenic	AluJb|SINE|Alu	13024	NM_138706	192134	Hs.352622	NM_138706	HPRD:16534	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding
19-PTNLD28-TUMOR_peak_106686	chr9	138354009	138354194	+	5.82951	NA	TTS (NR_038969)	TTS (NR_038969)	9994	NR_038969	100506599	Hs.561897	NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98909	chr8	58907370	58907489	+	5.82951	NA	intron (NM_147189, intron 1 of 4)	CpG	316	NM_147189	90362	Hs.154652	NM_147189	HPRD:14609	FAM110B	C8orf72	family with sequence similarity 110, member B	protein-coding
19-PTNLD28-TUMOR_peak_34745	chr15	79603732	79603948	+	5.82951	NA	intron (NR_125394, intron 1 of 3)	CpG	436	NR_125394	23423	Hs.513058	NM_007364	HPRD:18200	TMED3	C15orf22|P24B|p26	transmembrane emp24 protein transport domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_102589	chr9	28925230	28925432	+	5.82951	NA	intron (NM_001258282, intron 2 of 6)	MER77|LTR|ERVL	-36378	NR_030618	100126316		NR_030618	miRBase:MI0005564	MIR873	MIRN873|hsa-mir-873	microRNA 873	ncRNA
19-PTNLD28-TUMOR_peak_96867	chr8	1717386	1717501	+	5.82951	NA	intron (NM_018941, intron 1 of 2)	intron (NM_018941, intron 1 of 2)	5573	NM_018941	2055	Hs.127675	NM_018941	HPRD:06383	CLN8	C8orf61|EPMR	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	protein-coding
19-PTNLD28-TUMOR_peak_50331	chr19	55549725	55549851	+	5.82951	NA	promoter-TSS (NM_016363)	promoter-TSS (NM_016363)	-156	NM_001083899	51206	Hs.661752	NM_016363	HPRD:10406	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_33574	chr15	51914302	51914471	+	5.82951	NA	intron (NM_001174116, intron 1 of 42)	CpG	581	NM_015263	23312	Hs.511386	NM_015263	HPRD:10188	DMXL2	RC3	Dmx-like 2	protein-coding
19-PTNLD28-TUMOR_peak_67222	chr3	24871347	24871435	+	5.82951	NA	Intergenic	Intergenic	-308465	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_62337	chr20	56651557	56651726	+	5.82951	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-74342	NM_178456	128602	Hs.43977	NM_178456	HPRD:12787	C20orf85	LLC1|bA196N14.1	chromosome 20 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_39378	chr16	88752554	88752719	+	5.82843	NA	intron (NM_178310, intron 1 of 2)	CpG	246	NM_178310	333929	Hs.673548	NM_178310	HPRD:18781	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_8035	chr1	168194351	168194562	+	5.82843	NA	promoter-TSS (NM_199344)	promoter-TSS (NM_199344)	-799	NM_199344	375035	Hs.645435	NM_199344		SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_18894	chr11	61496388	61496503	+	5.82723	NA	exon (NM_006133, exon 8 of 20)	exon (NM_006133, exon 8 of 20)	-23676	NM_001127392	745	Hs.473109	NM_013279	HPRD:12213	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
19-PTNLD28-TUMOR_peak_84367	chr5	177407779	177408077	+	5.82617	NA	Intergenic	Intergenic	15315	NM_006261	5626	Hs.158301	NM_006261	HPRD:03325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_32924	chr15	32749691	32749862	+	5.82617	NA	Intergenic	MER20|DNA|hAT-Charlie	-1941	NM_001277308	728047	Hs.525905	NM_001277308		GOLGA8O	-	golgin A8 family, member O	protein-coding
19-PTNLD28-TUMOR_peak_63871	chr21	45020682	45020770	+	5.82617	NA	intron (NM_007031, intron 7 of 8)	intron (NM_007031, intron 7 of 8)	9144	NR_106718	102464825		NR_106718		MIR6070	hsa-mir-6070	microRNA 6070	ncRNA
19-PTNLD28-TUMOR_peak_32729	chr15	28895201	28895295	+	5.82617	NA	Intergenic	Intergenic	-4340	NR_036443	440248	Hs.531509	NM_199045	HPRD:18634	HERC2P9	-	hect domain and RLD 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_83985	chr5	172127830	172127938	+	5.82470	NA	Intergenic	Intergenic	-54622	NM_001287812	101928093	Hs.646902	NM_001287812		LOC101928093	-	uncharacterized LOC101928093	protein-coding
19-PTNLD28-TUMOR_peak_22787	chr12	6716480	6716701	+	5.82470	NA	promoter-TSS (NM_001297553)	promoter-TSS (NM_001297553)	9	NM_001273	1108	Hs.162233	NM_001273	HPRD:04472	CHD4	CHD-4|Mi-2b|Mi2-BETA	chromodomain helicase DNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_79648	chr5	40797983	40798257	+	5.82201	NA	intron (NM_206907, intron 1 of 9)	CpG	177	NM_206907	5562	Hs.43322	NM_006251	HPRD:04115	PRKAA1	AMPK|AMPKa1	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_66189	chr3	2140776	2140909	+	5.82201	NA	intron (NM_175607, intron 1 of 24)	CpG	292	NM_175607	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_56449	chr2	157287693	157287781	+	5.82201	NA	Intergenic	Intergenic	-4228	NM_001083112	2820	Hs.512382	NM_000408	HPRD:00715	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_50451	chr19	56683358	56683474	+	5.82201	NA	Intergenic	Intergenic	-3973	NM_033106	85569	Hs.283915	NM_033106	HPRD:17027	GALP	-	galanin-like peptide	protein-coding
19-PTNLD28-TUMOR_peak_54750	chr2	109065827	109065924	+	5.82201	NA	intron (NR_028063, intron 1 of 21)	CpG	298	NM_181453	9648	Hs.436505	NM_181453	HPRD:11001	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_40054	chr17	8025080	8025194	+	5.81776	NA	exon (NM_032580, exon 4 of 4)	exon (NM_032580, exon 4 of 4)	2273	NM_032580	84667	Hs.434828	NM_032580	HPRD:09729	HES7	SCDO4|bHLHb37	hes family bHLH transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_74444	chr4	9606259	9606367	+	5.81475	NA	Intergenic	HERVS71-int|LTR|ERV1	-48376	NR_031688	100302277		NR_031688	miRBase:MI0006422	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2	microRNA 548i-2	ncRNA
19-PTNLD28-TUMOR_peak_60061	chr20	19191543	19191684	+	5.81475	NA	Intergenic	Intergenic	-1677	NM_020689	57419	Hs.654790	NM_020689	HPRD:15352	SLC24A3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_84574	chr5	180287572	180287842	+	5.81475	NA	intron (NM_152283, intron 1 of 2)	intron (NM_152283, intron 1 of 2)	579	NM_001172638	643836	Hs.509227	NM_152283	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_45825	chr18	52441807	52441916	+	5.81475	NA	Intergenic	Intergenic	-53847	NM_004163	5874	Hs.25318	NM_004163	HPRD:04846	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_3023	chr1	44029870	44030051	+	5.81041	NA	intron (NM_130440, intron 5 of 32)	intron (NM_130440, intron 5 of 32)	33413	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_59147	chr2	239198894	239199091	+	5.81041	NA	Intergenic	Intergenic	-1785	NM_022817	8864	Hs.58756	NM_003894	HPRD:04575	PER2	FASPS|FASPS1	period circadian clock 2	protein-coding
19-PTNLD28-TUMOR_peak_1513	chr1	24358731	24358838	+	5.80755	NA	Intergenic	SVA_D|Other|Other	-51831	NM_006625	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_82359	chr5	135644263	135644443	+	5.80755	NA	intron (NM_001167577, intron 2 of 10)	intron (NM_001167577, intron 2 of 10)	56811	NM_020389	57113	Hs.591263	NM_020389	HPRD:18228	TRPC7	TRP7	transient receptor potential cation channel, subfamily C, member 7	protein-coding
19-PTNLD28-TUMOR_peak_38624	chr16	71741888	71742211	+	5.80755	NA	intron (NM_001289003, intron 2 of 17)	HERVH-int|LTR|ERV1	7694	NM_001289003	23035	Hs.709458	NM_015020	HPRD:11118	PHLPP2	PHLPPL	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_75001	chr4	39460139	39460259	+	5.80755	NA	promoter-TSS (NM_194451)	promoter-TSS (NM_194451)	8	NM_001024921	6133	Hs.412370	NM_000661	HPRD:04732	RPL9	L9|NPC-A-16	ribosomal protein L9	protein-coding
19-PTNLD28-TUMOR_peak_58402	chr2	219082252	219082509	+	5.80755	NA	intron (NM_005731, intron 1 of 9)	intron (NM_005731, intron 1 of 9)	260	NM_005731	10109	Hs.529303	NM_005731	HPRD:10367	ARPC2	ARC34|PNAS-139|p34-Arc	actin related protein 2/3 complex, subunit 2, 34kDa	protein-coding
19-PTNLD28-TUMOR_peak_22179	chr11	130325517	130325678	+	5.80755	NA	intron (NM_139055, intron 1 of 7)	intron (NM_139055, intron 1 of 7)	6728	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_63154	chr21	33202923	33203011	+	5.80755	NA	Intergenic	Intergenic	-42661	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_7439	chr1	157948817	157949047	+	5.80755	NA	Intergenic	CpG	-14131	NM_001286349	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_48562	chr19	33886904	33887041	+	5.80755	NA	intron (NM_000285, intron 12 of 14)	intron (NM_000285, intron 12 of 14)	21542	NM_001252296	1054	Hs.429666	NM_001806	HPRD:00738	CEBPG	GPE1BP|IG/EBP-1	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding
19-PTNLD28-TUMOR_peak_63153	chr21	33202311	33202399	+	5.80755	NA	Intergenic	MER112|DNA|hAT-Charlie	-43273	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_50149	chr19	53193070	53193307	+	5.80663	NA	intron (NM_001277947, intron 1 of 5)	CpG	646	NM_001277945	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_53310	chr2	69912915	69913059	+	5.80663	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-42010	NM_014911	22848	Hs.468878	NM_014911		AAK1	-	AP2 associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_70634	chr3	128342698	128342816	+	5.80663	NA	intron (NM_002950, intron 8 of 9)	L1MC4|LINE|L1	26962	NM_002950	6184	Hs.518244	NM_002950	HPRD:01598	RPN1	OST1|RBPH1	ribophorin I	protein-coding
19-PTNLD28-TUMOR_peak_77549	chr4	150931859	150932002	+	5.80238	NA	Intergenic	Intergenic	-67496	NM_001040260	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_108792	chrX	75393446	75393534	+	5.80238	NA	intron (NM_001300888, intron 2 of 4)	intron (NM_001300888, intron 2 of 4)	719	NM_016500	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_57274	chr2	181704186	181704379	+	5.80238	NA	intron (NR_104320, intron 3 of 3)	L1HS|LINE|L1	-140830	NM_182678	10477	Hs.470804	NM_006357	HPRD:05000	UBE2E3	UBCH9|UbcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
19-PTNLD28-TUMOR_peak_10017	chr1	213326263	213326358	+	5.80238	NA	intron (NM_001287219, intron 7 of 14)	SVA_F|Other|Other	101735	NM_001287219	26750	Hs.591416	NM_012424	HPRD:10204	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase, 52kDa, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_76845	chr4	122173505	122173613	+	5.80238	NA	Intergenic	Intergenic	-24938	NM_001244764	79931	Hs.208206	NM_024873	HPRD:16268	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_10552	chr1	227461353	227461460	+	5.80238	NA	intron (NM_014826, intron 1 of 34)	intron (NM_014826, intron 1 of 34)	44420	NM_014826	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_58864	chr2	232950031	232950119	+	5.80238	NA	intron (NR_046477, intron 5 of 18)	L2a|LINE|L2	123782	NR_046476	129563	Hs.732236	NM_152383	HPRD:14619	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_98296	chr8	38739505	38739839	+	5.80238	NA	Intergenic	Intergenic	-19081	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_60536	chr20	31490421	31490514	+	5.80238	NA	Intergenic	Intergenic	82768	NM_012325	22919	Hs.472437	NM_012325	HPRD:04379	MAPRE1	EB1	microtubule-associated protein, RP/EB family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_61975	chr20	51168889	51169032	+	5.80238	NA	Intergenic	Intergenic	-68417	NR_110038	101927700	Hs.434465	NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
19-PTNLD28-TUMOR_peak_52909	chr2	58343976	58344073	+	5.80238	NA	intron (NM_001288838, intron 9 of 15)	HERVH-int|LTR|ERV1	70177	NM_001130481	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_11704	chr10	3436278	3436426	+	5.80238	NA	Intergenic	L1MA8|LINE|L1	-221319	NM_001242307	10531	Hs.528300	NM_014889	HPRD:07142	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_110216	chrY	13592923	13593063	+	5.80238	NA	Intergenic	(CCCTAG)n|Simple_repeat|Simple_repeat	940396	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_33108	chr15	39283849	39284149	+	5.80238	NA	Intergenic	Intergenic	-258886	NM_207445	400360	Hs.376109	NM_207445	HPRD:13437	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_59384	chr20	361298	361702	+	5.80238	NA	promoter-TSS (NM_001301196)	promoter-TSS (NM_001301196)	227	NM_021158	57761	Hs.516826	NM_021158	HPRD:09836	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
19-PTNLD28-TUMOR_peak_8679	chr1	182269281	182269384	+	5.80238	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	13864	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
19-PTNLD28-TUMOR_peak_59055	chr2	237736794	237736898	+	5.80238	NA	Intergenic	MER21C|LTR|ERVL	-257238	NM_198189	10920	Hs.531713	NM_006710		COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_65765	chr22	43058024	43058135	+	5.80238	NA	Intergenic	Intergenic	-12674	NM_000398	1727	Hs.561064	NM_000398	HPRD:08942	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
19-PTNLD28-TUMOR_peak_43236	chr17	70657734	70658050	+	5.80238	NA	intron (NM_139177, intron 7 of 9)	intron (NM_139177, intron 7 of 9)	-21281	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	-	long intergenic non-protein coding RNA 511	ncRNA
19-PTNLD28-TUMOR_peak_27375	chr13	21100572	21100669	+	5.80238	NA	promoter-TSS (NM_015974)	promoter-TSS (NM_015974)	-608	NM_015974	51084	Hs.370703	NM_015974	HPRD:16762	CRYL1	GDH|HEL30|lambda-CRY	crystallin, lambda 1	protein-coding
19-PTNLD28-TUMOR_peak_58443	chr2	219712528	219712654	+	5.80238	NA	Intergenic	Intergenic	-11955	NM_006522	7475	Hs.29764	NM_006522	HPRD:05233	WNT6	-	wingless-type MMTV integration site family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_92460	chr7	47748822	47748928	+	5.80238	NA	Intergenic	Intergenic	-52199	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
19-PTNLD28-TUMOR_peak_58537	chr2	220833516	220833695	+	5.80238	NA	Intergenic	Intergenic	-62319	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_73181	chr3	190063810	190063918	+	5.80224	NA	Intergenic	L2b|LINE|L2	-23629	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_84279	chr5	176541023	176541154	+	5.80025	NA	Intergenic	Intergenic	-18992	NM_172349	64324	Hs.106861	NM_022455	HPRD:09455	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
19-PTNLD28-TUMOR_peak_50190	chr19	53661328	53661734	+	5.80025	NA	intron (NM_032584, intron 1 of 4)	CpG	782	NM_001172674	84671	Hs.467239	NM_032584	HPRD:15783	ZNF347	ZNF1111	zinc finger protein 347	protein-coding
19-PTNLD28-TUMOR_peak_26397	chr12	113530661	113530753	+	5.80025	NA	intron (NM_004416, intron 2 of 8)	intron (NM_004416, intron 2 of 8)	35045	NM_004416	1840	Hs.372152	NM_004416	HPRD:03991	DTX1	hDx-1	deltex 1, E3 ubiquitin ligase	protein-coding
19-PTNLD28-TUMOR_peak_14150	chr10	72518944	72519032	+	5.80025	NA	intron (NM_080722, intron 21 of 21)	intron (NM_080722, intron 21 of 21)	26169	NM_152710	219793	Hs.386698	NM_152710	HPRD:08500	TBATA	C10orf27|spatial	thymus, brain and testes associated	protein-coding
19-PTNLD28-TUMOR_peak_39354	chr16	88491412	88491500	+	5.80025	NA	Intergenic	Intergenic	-2423	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1	zinc finger protein 469	protein-coding
19-PTNLD28-TUMOR_peak_62458	chr20	60641334	60641542	+	5.80025	NA	promoter-TSS (NM_003185)	promoter-TSS (NM_003185)	-572	NM_003185	6874	Hs.18857	NM_003185	HPRD:11797	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa	protein-coding
19-PTNLD28-TUMOR_peak_78840	chr5	9619620	9619758	+	5.80025	NA	Intergenic	MIR|SINE|MIR	10774	NM_019599	50834	Hs.567492	NM_019599	HPRD:07267	TAS2R1	T2R1|TRB7	taste receptor, type 2, member 1	protein-coding
19-PTNLD28-TUMOR_peak_76530	chr4	108853013	108853228	+	5.80025	NA	exon (NM_183075, exon 1 of 5)	exon (NM_183075, exon 1 of 5)	403	NM_183075	113612	Hs.109087	NM_183075	HPRD:13109	CYP2U1	P450TEC|SPG49|SPG56	cytochrome P450, family 2, subfamily U, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_1131	chr1	17199482	17199787	+	5.79876	NA	Intergenic	CpG	-14118	NR_037446	100500876		NR_037446	miRBase:MI0016076	MIR3675	-	microRNA 3675	ncRNA
19-PTNLD28-TUMOR_peak_41612	chr17	41445029	41445370	+	5.79876	NA	Intergenic	Intergenic	21067	NR_027412	100130581	Hs.546897	NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
19-PTNLD28-TUMOR_peak_61280	chr20	43587868	43587967	+	5.79876	NA	intron (NM_006809, intron 1 of 6)	intron (NM_006809, intron 1 of 6)	1197	NM_006809	10953	Hs.517066	NM_006809	HPRD:11641	TOMM34	HTOM34P|TOM34|URCC3	translocase of outer mitochondrial membrane 34	protein-coding
19-PTNLD28-TUMOR_peak_75895	chr4	79696670	79696912	+	5.79821	NA	promoter-TSS (NM_198892)	promoter-TSS (NM_198892)	-741	NM_017593	55589	Hs.146551	NM_017593	HPRD:09828	BMP2K	BIKE	BMP2 inducible kinase	protein-coding
19-PTNLD28-TUMOR_peak_45487	chr18	43747958	43748098	+	5.79821	NA	Intergenic	Intergenic	-5960	NM_001008239	147339	Hs.116486	NM_145055	HPRD:12690	C18orf25	ARKL1|RNF111L1	chromosome 18 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_5573	chr1	112806226	112806472	+	5.79634	NA	Intergenic	Intergenic	-132451	NM_018704	55917	Hs.744100	NM_018704	HPRD:10906	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_71109	chr3	136698626	136698885	+	5.79634	NA	intron (NM_144717, intron 1 of 6)	intron (NM_144717, intron 1 of 6)	22048	NM_144717	53833	Hs.61232	NM_144717	HPRD:14594	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_63753	chr21	43777449	43777602	+	5.79634	NA	Intergenic	LTR40b|LTR|ERVL	-6317	NM_005423	7032	Hs.2979	NM_005423	HPRD:01682	TFF2	SML1|SP	trefoil factor 2	protein-coding
19-PTNLD28-TUMOR_peak_65780	chr22	43259318	43259462	+	5.79634	NA	Intergenic	L1ME1|LINE|L1	-5982	NM_014570	26286	Hs.685225	NM_014570	HPRD:06444	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
19-PTNLD28-TUMOR_peak_26209	chr12	109979923	109980110	+	5.79634	NA	Intergenic	MER117|DNA|hAT-Charlie	31342	NM_052845	326625	Hs.12106	NM_052845	HPRD:07398	MMAB	ATR|CFAP23|cblB|cob	methylmalonic aciduria (cobalamin deficiency) cblB type	protein-coding
19-PTNLD28-TUMOR_peak_29706	chr14	31343653	31343748	+	5.79634	NA	promoter-TSS (NM_001135058)	promoter-TSS (NM_001135058)	-41	NM_001135058	1690	Hs.21016	NM_004086	HPRD:04431	COCH	COCH-5B2|COCH5B2|DFNA9	cochlin	protein-coding
19-PTNLD28-TUMOR_peak_67048	chr3	18899811	18899972	+	5.79634	NA	Intergenic	Intergenic	-290126	NM_144633	131096	Hs.475656	NM_144633	HPRD:10006	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
19-PTNLD28-TUMOR_peak_63819	chr21	44502868	44502965	+	5.79634	NA	Intergenic	Intergenic	-6444	NM_001178008	875	Hs.533013	NM_000071	HPRD:01994	CBS	HIP4	cystathionine-beta-synthase	protein-coding
19-PTNLD28-TUMOR_peak_85798	chr6	19754152	19754332	+	5.79634	NA	Intergenic	Intergenic	-83359	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_73446	chr3	194840323	194840416	+	5.79634	NA	intron (NM_152531, intron 3 of 3)	intron (NM_152531, intron 3 of 3)	25052	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_80542	chr5	71045605	71045702	+	5.79634	NA	Intergenic	Intergenic	30663	NM_004291	9607	Hs.1707	NM_004291	HPRD:04006	CARTPT	CART	CART prepropeptide	protein-coding
19-PTNLD28-TUMOR_peak_60281	chr20	25032993	25033110	+	5.79570	NA	intron (NM_001252677, intron 1 of 11)	intron (NM_001252677, intron 1 of 11)	5767	NM_001252675	84532	Hs.529353	NM_032501	HPRD:12413	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding
19-PTNLD28-TUMOR_peak_44092	chr17	80291182	80291292	+	5.79570	NA	intron (NM_003004, intron 1 of 4)	CpG	684	NM_003004	6398	Hs.558009	NM_003004	HPRD:04004	SECTM1	K12	secreted and transmembrane 1	protein-coding
19-PTNLD28-TUMOR_peak_6362	chr1	145990838	145991136	+	5.79570	NA	intron (NR_104217, intron 2 of 17).2	CpG	-45510	NR_111936	100034743	Hs.696575	NR_003377	ENSG00000215860	PDZK1P2	OTTHUMT00000038524|PDZK1P1	PDZ domain containing 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_95993	chr7	142571145	142571245	+	5.79453	NA	intron (NM_018646, intron 13 of 14)	intron (NM_018646, intron 13 of 14)	10681	NM_001280795	2051	Hs.380089	NM_004445	HPRD:04133	EPHB6	HEP	EPH receptor B6	protein-coding
19-PTNLD28-TUMOR_peak_14075	chr10	71620770	71620947	+	5.79113	NA	intron (NM_080798, intron 3 of 34)	intron (NM_080798, intron 3 of 34)	59214	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_35913	chr16	3207186	3207591	+	5.78933	NA	Intergenic	Intergenic	22254	NM_001134655	7760	Hs.115284	NM_004220	HPRD:12224	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
19-PTNLD28-TUMOR_peak_86766	chr6	32822250	32822412	+	5.78933	NA	promoter-TSS (NM_000593).7	promoter-TSS (NM_000593).7	393	NM_002800	5698	Hs.654585	NM_002800	HPRD:01514	PSMB9	LMP2|PSMB6i|RING12|beta1i	proteasome (prosome, macropain) subunit, beta type, 9	protein-coding
19-PTNLD28-TUMOR_peak_88469	chr6	80247555	80247652	+	5.78905	NA	promoter-TSS (NM_001122769)	promoter-TSS (NM_001122769)	-456	NM_001122769	167691	Hs.21945	NM_181714	HPRD:10791	LCA5	C6orf152	Leber congenital amaurosis 5	protein-coding
19-PTNLD28-TUMOR_peak_61420	chr20	44937085	44937217	+	5.78905	NA	promoter-TSS (NM_021248)	promoter-TSS (NM_021248)	-14	NM_021248	64405	Hs.472861	NM_021248	HPRD:13018	CDH22	C20orf25|dJ998H6.1	cadherin 22, type 2	protein-coding
19-PTNLD28-TUMOR_peak_18449	chr11	47234529	47234690	+	5.78235	NA	Intergenic	Intergenic	-1884	NM_000107	1643	Hs.700338	NM_000107	HPRD:02886	DDB2	DDBB|UV-DDB2	damage-specific DNA binding protein 2, 48kDa	protein-coding
19-PTNLD28-TUMOR_peak_45652	chr18	46478177	46478379	+	5.78061	NA	Intergenic	CpG-11785	-1197	NM_001190821	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_59010	chr2	236402515	236402708	+	5.77855	NA	promoter-TSS (NM_014914)	promoter-TSS (NM_014914)	-122	NM_001037131	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_42861	chr17	62052073	62052239	+	5.77855	NA	Intergenic	Intergenic	-1878	NM_000334	6329	Hs.46038	NM_000334	HPRD:04912	SCN4A	HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium channel, voltage-gated, type IV, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_104162	chr9	85843755	85843844	+	5.77855	NA	Intergenic	L1PA2|LINE|L1	38403	NM_001244962	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_36999	chr16	27989438	27989572	+	5.77855	NA	intron (NM_001109763, intron 1 of 6)	intron (NM_001109763, intron 1 of 6)	85325	NM_001109763	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_72493	chr3	177177332	177177426	+	5.77855	NA	intron (NR_047568, intron 1 of 3)	L2|LINE|L2	17670	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_48351	chr19	28349847	28350396	+	5.77855	NA	Intergenic	HSAT4|Satellite|centr	-65273	NR_027301	148189	Hs.706547	NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
19-PTNLD28-TUMOR_peak_1475	chr1	23953833	23953939	+	5.77855	NA	promoter-TSS (NR_027042)	promoter-TSS (NR_027042)	62	NR_027042	259283	Hs.523369	NR_027042	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
19-PTNLD28-TUMOR_peak_27906	chr13	40344340	40344542	+	5.77855	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-106169	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_9546	chr1	204592533	204592659	+	5.77855	NA	intron (NM_201630, intron 1 of 1)	intron (NM_201630, intron 1 of 1)	61885	NM_006338	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_62498	chr20	60982651	60982761	+	5.77729	NA	promoter-TSS (NM_031215)	promoter-TSS (NM_031215)	-367	NM_031215	81928	Hs.301040	NM_031215	HPRD:12994	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
19-PTNLD28-TUMOR_peak_19565	chr11	67806396	67806493	+	5.77701	NA	promoter-TSS (NM_006019)	promoter-TSS (NM_006019)	-18	NM_006019	10312	Hs.495985	NM_006019	HPRD:05207	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3	protein-coding
19-PTNLD28-TUMOR_peak_34602	chr15	76031309	76031407	+	5.77701	NA	non-coding (NR_024595, exon 2 of 5)	non-coding (NR_024595, exon 2 of 5)	1060	NR_024595	100128285	Hs.604066	NR_024595	ENSG00000246877	DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	DNM1 pseudogene 35	pseudo
19-PTNLD28-TUMOR_peak_36008	chr16	4465858	4466206	+	5.77701	NA	intron (NM_024535, intron 1 of 27)	CpG	930	NM_024535	79585	Hs.437957	NM_024535	HPRD:07975	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
19-PTNLD28-TUMOR_peak_38105	chr16	58056714	58056804	+	5.77614	NA	Intergenic	Intergenic	-2523	NM_002428	4324	Hs.80343	NM_002428	HPRD:03775	MMP15	MT2-MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_39610	chr17	1358512	1358747	+	5.77614	NA	intron (NM_016823, intron 1 of 2)	intron (NM_016823, intron 1 of 2)	932	NM_016823	1398	Hs.461896	NM_005206	HPRD:01267	CRK	CRKII|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_44090	chr17	80290128	80290305	+	5.77614	NA	intron (NM_003004, intron 1 of 4)	intron (NM_003004, intron 1 of 4)	1705	NM_003004	6398	Hs.558009	NM_003004	HPRD:04004	SECTM1	K12	secreted and transmembrane 1	protein-coding
19-PTNLD28-TUMOR_peak_21022	chr11	108368981	108369212	+	5.77614	NA	promoter-TSS (NM_153705)	promoter-TSS (NM_153705)	63	NM_153705	143888	Hs.83286	NM_153705	HPRD:13773	KDELC2	-	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding
19-PTNLD28-TUMOR_peak_35234	chr15	91415663	91415755	+	5.77566	NA	promoter-TSS (NM_001289824)	promoter-TSS (NM_001289824)	-399	NM_001289824	5045	Hs.513153	NM_002569	HPRD:00653	FURIN	FUR|PACE|PCSK3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding
19-PTNLD28-TUMOR_peak_51361	chr2	18060845	18060942	+	5.77566	NA	intron (NM_002252, intron 1 of 2)	CpG	969	NM_002252	3790	Hs.414489	NM_002252	HPRD:04865	KCNS3	KV9.3	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
19-PTNLD28-TUMOR_peak_78551	chr5	78750	78871	+	5.77566	NA	Intergenic	Intergenic	-61563	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 4B	protein-coding
19-PTNLD28-TUMOR_peak_2374	chr1	36349291	36349494	+	5.77566	NA	intron (NM_012199, intron 1 of 18)	CpG	582	NM_012199	26523	Hs.22867	NM_012199	HPRD:06942	AGO1	EIF2C|EIF2C1|GERP95|Q99	argonaute RISC catalytic component 1	protein-coding
19-PTNLD28-TUMOR_peak_100499	chr8	124007731	124007859	+	5.77566	NA	Intergenic	Intergenic	46868	NM_024295	79139	Hs.241576	NM_024295	HPRD:12302	DERL1	DER-1|DER1	derlin 1	protein-coding
19-PTNLD28-TUMOR_peak_105868	chr9	124062068	124062200	+	5.77467	NA	promoter-TSS (NM_000177)	promoter-TSS (NM_000177)	55	NM_000177	2934	Hs.522373	NM_000177	HPRD:00674	GSN	ADF|AGEL	gelsolin	protein-coding
19-PTNLD28-TUMOR_peak_48037	chr19	18358974	18359175	+	5.77467	NA	promoter-TSS (NM_000923)	promoter-TSS (NM_000923)	-64	NM_000923	5143	Hs.132584	NM_000923	HPRD:02529	PDE4C	DPDE1	phosphodiesterase 4C, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_62485	chr20	60936289	60936404	+	5.77243	NA	intron (NM_005560, intron 2 of 79)	intron (NM_005560, intron 2 of 79)	6022	NM_005560	3911	Hs.473256	NM_005560	HPRD:03020	LAMA5	-	laminin, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_43547	chr17	74379488	74379593	+	5.77117	NA	Intergenic	CpG	-1150	NM_021972	8877	Hs.68061	NM_021972	HPRD:04768	SPHK1	SPHK	sphingosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_21989	chr11	126860383	126860482	+	5.77117	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	-1994	NR_036126	100422918		NR_036126		MIR3167	-	microRNA 3167	ncRNA
19-PTNLD28-TUMOR_peak_89031	chr6	109267258	109267369	+	5.77117	NA	intron (NM_032131, intron 12 of 17)	intron (NM_032131, intron 12 of 17)	-22007	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_91365	chr7	16684399	16684563	+	5.77117	NA	intron (NM_020319, intron 1 of 9)	CpG	961	NM_020319	57037	Hs.157378	NM_020319	HPRD:12454	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_29902	chr14	35806004	35806131	+	5.76425	NA	Intergenic	Intergenic	44544	NM_002791	5687	Hs.446260	NM_002791	HPRD:04171	PSMA6	IOTA|PROS27|p27K	proteasome (prosome, macropain) subunit, alpha type, 6	protein-coding
19-PTNLD28-TUMOR_peak_17111	chr11	10749119	10749227	+	5.76365	NA	Intergenic	Intergenic	-23638	NM_014633	9646	Hs.725151	NM_014633	HPRD:06717	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9, Paf1/RNA polymerase II complex component	protein-coding
19-PTNLD28-TUMOR_peak_105687	chr9	118916647	118916746	+	5.76365	NA	exon (NM_002581, exon 1 of 22)	exon (NM_002581, exon 1 of 22)	625	NM_002581	5069	Hs.643599	NM_002581	HPRD:01448	PAPPA	ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1	pregnancy-associated plasma protein A, pappalysin 1	protein-coding
19-PTNLD28-TUMOR_peak_81192	chr5	94027818	94027931	+	5.76365	NA	exon (NM_032290, exon 20 of 21)	exon (NM_032290, exon 20 of 21)	73483	NM_032290	84250	Hs.657315	NM_032290	HPRD:08538	ANKRD32	BRCTD1|BRCTx	ankyrin repeat domain 32	protein-coding
19-PTNLD28-TUMOR_peak_107970	chrX	39676284	39676486	+	5.76365	NA	Intergenic	L2c|LINE|L2	280334	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_52211	chr2	38501841	38501990	+	5.76365	NA	Intergenic	Intergenic	102517	NM_022374	64225	Hs.727652	NM_022374	HPRD:10662	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_28065	chr13	44880625	44880782	+	5.76365	NA	Intergenic	Intergenic	-67275	NM_001010897	387923	Hs.377972	NM_001010897	HPRD:16590	SERP2	C13orf21|bA269C23.1	stress-associated endoplasmic reticulum protein family member 2	protein-coding
19-PTNLD28-TUMOR_peak_93886	chr7	90871861	90872136	+	5.76365	NA	Intergenic	MIRb|SINE|MIR	-21785	NM_003505	8321	Hs.94234	NM_003505	HPRD:04558	FZD1	-	frizzled class receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_38589	chr16	70996527	70996731	+	5.76365	NA	intron (NM_001270974, intron 37 of 85)	intron (NM_001270974, intron 37 of 85)	-161568	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_95629	chr7	137039201	137039386	+	5.76365	NA	Intergenic	Intergenic	-10747	NM_002825	5764	Hs.371249	NM_002825	HPRD:01199	PTN	HARP|HBGF8|HBNF|NEGF1	pleiotrophin	protein-coding
19-PTNLD28-TUMOR_peak_88304	chr6	73704178	73704266	+	5.76365	NA	intron (NM_001160133, intron 1 of 14)	L1HS|LINE|L1	-26746	NR_036244	100423005		NR_036244	miRBase:MI0015890	MIR4282	-	microRNA 4282	ncRNA
19-PTNLD28-TUMOR_peak_103786	chr9	74061778	74062089	+	5.76365	NA	Intergenic	CpG	321867	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_30280	chr14	52266761	52267022	+	5.76365	NA	Intergenic	L1HS|LINE|L1	-60131	NM_053064	54331	Hs.187772	NM_053064	HPRD:16234	GNG2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_70961	chr3	133930771	133930861	+	5.76365	NA	intron (NM_001005861, intron 2 of 14)	intron (NM_001005861, intron 2 of 14)	38770	NM_002958	6259	Hs.654562	NM_002958	HPRD:02751	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_78698	chr5	1710434	1710522	+	5.76365	NA	Intergenic	L1PA3|LINE|L1	-1495	NR_036240	100422966		NR_036240	miRBase:MI0015886	MIR4277	-	microRNA 4277	ncRNA
19-PTNLD28-TUMOR_peak_23125	chr12	12946985	12947073	+	5.76365	NA	Intergenic	AluJb|SINE|Alu	8488	NM_030817	81575	Hs.23388	NM_030817	HPRD:13153	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_3522	chr1	53174061	53174259	+	5.76365	NA	Intergenic	Intergenic	-10122	NM_023077	65260	Hs.349905	NM_023077		COA7	C1orf163|RESA1|SELRC1	cytochrome c oxidase assembly factor 7 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_8895	chr1	186124883	186125018	+	5.76365	NA	intron (NM_031935, intron 97 of 106)	intron (NM_031935, intron 97 of 106)	-140455	NM_001127709	10216	Hs.647723	NM_005807	HPRD:05047	PRG4	CACP|HAPO|JCAP|MSF|SZP|bG174L6.2	proteoglycan 4	protein-coding
19-PTNLD28-TUMOR_peak_79972	chr5	55676952	55677040	+	5.76365	NA	Intergenic	AluY|SINE|Alu	100600	NR_104664	102467147	Hs.650177	NR_104664		LOC102467147	-	uncharacterized LOC102467147	ncRNA
19-PTNLD28-TUMOR_peak_102857	chr9	35617018	35617211	+	5.76365	NA	intron (NM_001782, intron 3 of 8)	CpG	1310	NM_001782	971	Hs.116481	NM_001782	HPRD:00118	CD72	CD72b|LYB2	CD72 molecule	protein-coding
19-PTNLD28-TUMOR_peak_89451	chr6	130686579	130686783	+	5.76365	NA	promoter-TSS (NM_001258275)	promoter-TSS (NM_001258275)	-111	NM_001258275	154075	Hs.440508	NM_152552	HPRD:11530	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_55935	chr2	136555191	136555291	+	5.76365	NA	intron (NM_002299, intron 13 of 16)	intron (NM_002299, intron 13 of 16)	-22520	NR_045486	100507600	Hs.662020	NR_045486	ENSG00000226806	LOC100507600	-	uncharacterized LOC100507600	ncRNA
19-PTNLD28-TUMOR_peak_94476	chr7	101627542	101627643	+	5.76365	NA	intron (NM_001202544, intron 2 of 21)	intron (NM_001202544, intron 2 of 21)	166710	NM_181552	1523	Hs.191482	NM_001913	HPRD:00295	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut-like homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_32712	chr15	28557260	28557592	+	5.76365	NA	intron (NM_004667, intron 2 of 92)	intron (NM_004667, intron 2 of 92)	9872	NM_004667	8924	Hs.434890	NM_004667	HPRD:06905	HERC2	D15F37S1|MRT38|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_65782	chr22	43265074	43265162	+	5.76365	NA	TTS (NM_001184970)	TTS (NM_001184970)	-11710	NM_014570	26286	Hs.685225	NM_014570	HPRD:06444	ARFGAP3	ARFGAP1	ADP-ribosylation factor GTPase activating protein 3	protein-coding
19-PTNLD28-TUMOR_peak_85984	chr6	24767066	24767233	+	5.76365	NA	Intergenic	Intergenic	-8010	NM_001251990	51053	Hs.234896	NM_015895	HPRD:06783	GMNN	Gem	geminin, DNA replication inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_958	chr1	15266589	15266699	+	5.76316	NA	intron (NM_001018001, intron 1 of 7)	MLT1M|LTR|ERVL-MaLR	-5771	NM_001017999	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_80823	chr5	76575901	76575996	+	5.76316	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	69242	NM_001029852	8622	Hs.584830	NM_003719	HPRD:04546	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
19-PTNLD28-TUMOR_peak_34696	chr15	78441974	78442146	+	5.76316	NA	intron (NM_005530, intron 1 of 10)	CpG	341	NM_005530	3419	Hs.591110	NM_005530		IDH3A	-	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding
19-PTNLD28-TUMOR_peak_85635	chr6	16184469	16184590	+	5.76316	NA	Intergenic	Intergenic	42742	NR_039782	100616269		NR_039782		MIR4639	-	microRNA 4639	ncRNA
19-PTNLD28-TUMOR_peak_80382	chr5	67520816	67520910	+	5.76316	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	9279	NM_181523	5295	Hs.132225	NM_181504	HPRD:01381	PIK3R1	AGM7|GRB1|p85|p85-ALPHA	phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_17133	chr11	11056117	11056293	+	5.76316	NA	Intergenic	L1MD2|LINE|L1	176441	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_12762	chr10	31074225	31074378	+	5.76316	NA	Intergenic	CpG	93098	NR_036438	645954	Hs.408581	NR_036438	ENSG00000234814	SVILP1	-	supervillin pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_55158	chr2	115302959	115303047	+	5.76316	NA	intron (NM_001178036, intron 2 of 26)	intron (NM_001178036, intron 2 of 26)	83823	NM_001178036	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_55056	chr2	113715027	113715298	+	5.76316	NA	Intergenic	L2a|LINE|L2	-20434	NM_001278568	56300	Hs.211238	NM_019618	HPRD:05707	IL36G	IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2	interleukin 36, gamma	protein-coding
19-PTNLD28-TUMOR_peak_58803	chr2	232238024	232238112	+	5.76316	NA	3' UTR (NM_001271466, exon 24 of 24)	3' UTR (NM_001271466, exon 24 of 24)	10649	NR_039937	100616317		NR_039937		MIR4777	-	microRNA 4777	ncRNA
19-PTNLD28-TUMOR_peak_22936	chr12	8472919	8473033	+	5.76316	NA	Intergenic	HERVS71-int|LTR|ERV1	70372	NR_024420	389634	Hs.434403	NM_001012988	HPRD:18395	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
19-PTNLD28-TUMOR_peak_78005	chr4	170025281	170025466	+	5.76316	NA	intron (NM_020870, intron 11 of 11)	intron (NM_020870, intron 11 of 11)	-93905	NM_032783	84869	Hs.659311	NM_032783	HPRD:07859	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
19-PTNLD28-TUMOR_peak_40387	chr17	17495659	17495844	+	5.76106	NA	promoter-TSS (NM_148172)	promoter-TSS (NM_148172)	-734	NM_001267551	10400	Hs.714193	NM_007169	HPRD:03862	PEMT	PEAMT|PEMPT|PEMT2|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_40450	chr17	18161226	18161329	+	5.75917	NA	intron (NM_001256265, intron 1 of 28)	intron (NM_001256265, intron 1 of 28)	593	NM_001256264	2314	Hs.513984	NM_002018	HPRD:02647	FLII	FLI|FLIL|Fli1	flightless I homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44481	chr18	9103141	9103234	+	5.75706	NA	intron (NM_021074, intron 1 of 7)	intron (NM_021074, intron 1 of 7)	559	NM_021074	4729	Hs.464572	NM_021074	HPRD:02757	NDUFV2	CI-24k	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_93248	chr7	73498301	73498504	+	5.75706	NA	intron (NM_002314, intron 1 of 15)	CpG	295	NM_002314	3984	Hs.647035	NM_002314	HPRD:03210	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86115	chr6	26234236	26234345	+	5.75706	NA	TTS (NM_005320)	TTS (NM_005320)	926	NM_005320	3007	Hs.136857	NM_005320	HPRD:06764	HIST1H1D	H1.3|H1D|H1F3|H1s-2	histone cluster 1, H1d	protein-coding
19-PTNLD28-TUMOR_peak_96822	chr8	40660	40784	+	5.75628	NA	Intergenic	Intergenic	76302	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_106450	chr9	133569295	133569430	+	5.75628	NA	intron (NM_001282709, intron 1 of 7)	CpG	215	NM_001282708	23404	Hs.654643	NM_014285	HPRD:03758	EXOSC2	RRP4|Rrp4p|hRrp4p|p7	exosome component 2	protein-coding
19-PTNLD28-TUMOR_peak_40343	chr17	16736197	16736554	+	5.75628	NA	promoter-TSS (NR_029392)	promoter-TSS (NR_029392)	-228	NR_029392	400578	Hs.723586	NR_029392	ENSG00000227300	KRT16P2	-	keratin 16 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_26975	chr12	124997434	124997522	+	5.75628	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	54532	NM_006312	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_45285	chr18	35028104	35028343	+	5.75347	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	117777	NM_001025089	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_49258	chr19	44036826	44036934	+	5.75347	NA	promoter-TSS (NM_174945)	promoter-TSS (NM_174945)	-460	NM_174945	284346	Hs.213534	NM_174945		ZNF575	-	zinc finger protein 575	protein-coding
19-PTNLD28-TUMOR_peak_86096	chr6	26170574	26170733	+	5.75347	NA	intron (NM_138720, intron 1 of 1)	intron (NM_138720, intron 1 of 1)	12304	NM_138720	3017	Hs.591797	NM_021063	HPRD:07535	HIST1H2BD	H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6	histone cluster 1, H2bd	protein-coding
19-PTNLD28-TUMOR_peak_52420	chr2	43501389	43501482	+	5.75270	NA	intron (NM_022065, intron 36 of 37)	intron (NM_022065, intron 36 of 37)	47085	NR_027251	100129726	Hs.194480	NM_178529		LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
19-PTNLD28-TUMOR_peak_53350	chr2	70476076	70476201	+	5.75270	NA	promoter-TSS (NM_022037)	promoter-TSS (NM_022037)	-359	NM_022173	7072	Hs.413123	NM_022037	HPRD:04626	TIA1	TIA-1|WDM	TIA1 cytotoxic granule-associated RNA binding protein	protein-coding
19-PTNLD28-TUMOR_peak_31460	chr14	78128013	78128247	+	5.75270	NA	Intergenic	LTR5_Hs|LTR|ERVK	-45020	NM_004863	9517	Hs.435661	NM_004863	HPRD:05755	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase, long chain base subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_50222	chr19	54057405	54057518	+	5.75270	NA	promoter-TSS (NM_001253801)	promoter-TSS (NM_001253801)	-438	NM_001253801	55422	Hs.185674	NM_018555	HPRD:05827	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
19-PTNLD28-TUMOR_peak_65927	chr22	45945186	45945274	+	5.75270	NA	intron (NM_001996, intron 13 of 14)	intron (NM_001996, intron 13 of 14)	46511	NM_001996	2192	Hs.24601	NM_001996	HPRD:00629	FBLN1	FBLN|FIBL1	fibulin 1	protein-coding
19-PTNLD28-TUMOR_peak_70087	chr3	120169350	120169896	+	5.75270	NA	intron (NM_007085, intron 1 of 10)	CpG-18807	295	NM_007085	11167	Hs.269512	NM_007085		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_1162	chr1	17765765	17765882	+	5.75270	NA	promoter-TSS (NM_001136204)	promoter-TSS (NM_001136204)	427	NM_018715	55920	Hs.380857	NM_018715	HPRD:18171	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
19-PTNLD28-TUMOR_peak_37755	chr16	50402288	50402403	+	5.75002	NA	intron (NM_001173984, intron 1 of 16)	intron (NM_001173984, intron 1 of 16)	500	NM_013263	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_62118	chr20	52874065	52874177	+	5.75002	NA	Intergenic	Intergenic	49619	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_34541	chr15	75359535	75359769	+	5.75002	NA	Intergenic	HERVP71A-int|LTR|ERV1	24042	NM_001301105	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_78264	chr4	184718689	184718831	+	5.75002	NA	Intergenic	CpG	-107749	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_2149	chr1	33005280	33005878	+	5.75002	NA	intron (NM_001040441, intron 1 of 4)	CpG	833	NM_001040441	653121	Hs.546479	NM_144621	HPRD:10315	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
19-PTNLD28-TUMOR_peak_78368	chr4	186489016	186489118	+	5.75002	NA	Intergenic	Intergenic	-32355	NR_047562	27295	Hs.701364	NM_014476		PDLIM3	ALP	PDZ and LIM domain 3	protein-coding
19-PTNLD28-TUMOR_peak_21593	chr11	119455476	119455570	+	5.75002	NA	Intergenic	CpG	143912	NM_203286	5818	Hs.334846	NM_002855	HPRD:07200	PVRL1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1	poliovirus receptor-related 1 (herpesvirus entry mediator C)	protein-coding
19-PTNLD28-TUMOR_peak_61627	chr20	47444852	47444961	+	5.74924	NA	promoter-TSS (NM_020820)	promoter-TSS (NM_020820)	-486	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_2237	chr1	33925511	33925663	+	5.74924	NA	Intergenic	L2|LINE|L2	-12645	NM_145238	7579	Hs.442705	NM_145238	HPRD:15769	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_11394	chr1	244394557	244394723	+	5.74924	NA	Intergenic	MIR|SINE|MIR	-121297	NM_001276349	200159	Hs.442703	NM_001012970	HPRD:13168	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
19-PTNLD28-TUMOR_peak_105608	chr9	117373519	117373736	+	5.74924	NA	promoter-TSS (NM_153045)	promoter-TSS (NM_153045)	-79	NM_153045	203197	Hs.522357	NM_153045	HPRD:12988	C9orf91	-	chromosome 9 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_42996	chr17	64298472	64298564	+	5.74924	NA	promoter-TSS (NM_002737)	promoter-TSS (NM_002737)	-408	NM_002737	5578	Hs.531704	NM_002737	HPRD:01498	PRKCA	AAG6|PKC-alpha|PKCA|PRKACA	protein kinase C, alpha	protein-coding
19-PTNLD28-TUMOR_peak_38134	chr16	58529175	58529320	+	5.74924	NA	intron (NM_022910, intron 3 of 15)	intron (NM_022910, intron 3 of 15)	-4800	NM_001242835	65009	Hs.322430	NM_020465	HPRD:14817	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
19-PTNLD28-TUMOR_peak_32066	chr14	100769081	100769357	+	5.74924	NA	intron (NM_001291814, intron 1 of 4)	L1M6|LINE|L1	3665	NM_152333	123096	Hs.578109	NM_152333	HPRD:15360	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29	protein-coding
19-PTNLD28-TUMOR_peak_109	chr1	1098801	1098966	+	5.74924	NA	Intergenic	CpG	-3601	NR_029639	406984		NR_029639	miRBase:MI0000342	MIR200B	MIRN200B	microRNA 200b	ncRNA
19-PTNLD28-TUMOR_peak_61444	chr20	45185972	45186101	+	5.74924	NA	TTS (NM_022829)	TTS (NM_022829)	-6823	NM_080721	128506	Hs.526636	NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_106281	chr9	131313432	131313568	+	5.74508	NA	Intergenic	Intergenic	-1337	NM_001130438	6709	Hs.372331	NM_003127	HPRD:01684	SPTAN1	EIEE5|NEAS|SPTA2	spectrin, alpha, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_98131	chr8	33427438	33427550	+	5.74462	NA	Intergenic	Intergenic	-2848	NM_024787	79845	Hs.151237	NM_024787	HPRD:11498	RNF122	-	ring finger protein 122	protein-coding
19-PTNLD28-TUMOR_peak_32454	chr15	20453456	20453643	+	5.74462	NA	Intergenic	Intergenic	-34448	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_34863	chr15	82945481	82945597	+	5.74167	NA	intron (NR_102747, intron 1 of 5)	CpG	789	NR_102747	727751	Hs.546614	NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_37409	chr16	32314774	32314872	+	5.73781	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-13521	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74062	chr4	4287196	4287331	+	5.73781	NA	intron (NM_017816, intron 2 of 9)	intron (NM_017816, intron 2 of 9)	4485	NM_001145725	55646	Hs.425427	NM_017816	HPRD:10064	LYAR	ZC2HC2|ZLYAR	Ly1 antibody reactive	protein-coding
19-PTNLD28-TUMOR_peak_91149	chr7	6143922	6144097	+	5.73781	NA	promoter-TSS (NM_032172)	promoter-TSS (NM_032172)	-541	NM_032172	84132	Hs.31856	NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
19-PTNLD28-TUMOR_peak_61428	chr20	44979142	44979435	+	5.73727	NA	intron (NM_001281458, intron 10 of 10)	intron (NM_001281458, intron 10 of 10)	13809	NM_015945	51006	Hs.593344	NM_015945	HPRD:15371	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 (GDP-fucose transporter), member C2	protein-coding
19-PTNLD28-TUMOR_peak_4116	chr1	65613495	65613925	+	5.73567	NA	promoter-TSS (NM_013410)	promoter-TSS (NM_013410)	-140	NM_013410	205	Hs.10862	NM_013410	HPRD:00048	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_37337	chr16	31213080	31213459	+	5.73567	NA	promoter-TSS (NR_102400)	promoter-TSS (NR_102400)	63	NR_102400	100652740	Hs.550659	NR_102400	ENSG00000261359	PYCARDOS	C16orf98	PYCARD opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_38084	chr16	57860679	57860767	+	5.73533	NA	Intergenic	Intergenic	16174	NM_001278081	388282	Hs.434720	NM_001278081		LOC388282	-	uncharacterized LOC388282	protein-coding
19-PTNLD28-TUMOR_peak_5384	chr1	110009379	110009777	+	5.73533	NA	intron (NM_001040709, intron 1 of 5)	CpG	478	NM_001040709	284612	Hs.528366	NM_001006603	HPRD:17478	SYPL2	MG29	synaptophysin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_3551	chr1	53661992	53662097	+	5.73533	NA	promoter-TSS (NM_000098)	promoter-TSS (NM_000098)	-57	NM_000098	1376	Hs.713535	NM_000098	HPRD:02802	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_90868	chr7	1893636	1893870	+	5.73012	NA	intron (NM_001013836, intron 18 of 18)	intron (NM_001013836, intron 18 of 18)	-9864	NR_039799	100616160		NR_039799		MIR4655	-	microRNA 4655	ncRNA
19-PTNLD28-TUMOR_peak_28376	chr13	58204095	58204243	+	5.73012	NA	Intergenic	CpG	-1620	NM_001040429	27253	Hs.106511	NM_014459	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
19-PTNLD28-TUMOR_peak_56321	chr2	152447859	152447978	+	5.73012	NA	exon (NM_001164507, exon 96 of 182)	exon (NM_001164507, exon 96 of 182)	143083	NM_001164508	4703	Hs.588655	NM_004543	HPRD:01196	NEB	NEB177D|NEM2	nebulin	protein-coding
19-PTNLD28-TUMOR_peak_108458	chrX	56590012	56590171	+	5.73012	NA	promoter-TSS (NM_013444)	promoter-TSS (NM_013444)	65	NM_013444	29978	Hs.179309	NM_013444	HPRD:02224	UBQLN2	ALS15|CHAP1|DSK2|N4BP4|PLIC2	ubiquilin 2	protein-coding
19-PTNLD28-TUMOR_peak_75153	chr4	48700559	48700810	+	5.73012	NA	intron (NM_015030, intron 2 of 63)	intron (NM_015030, intron 2 of 63)	81632	NM_015030	285527	Hs.595553	NM_015030	ENSG00000075539	FRYL	KIAA0826	FRY-like	protein-coding
19-PTNLD28-TUMOR_peak_67629	chr3	39543726	39543932	+	5.73012	NA	intron (NR_003090, intron 3 of 5)	CpG	272	NM_001278323	4336	Hs.121333	NM_182935	HPRD:02973	MOBP	-	myelin-associated oligodendrocyte basic protein	protein-coding
19-PTNLD28-TUMOR_peak_20690	chr11	95282965	95283055	+	5.73012	NA	Intergenic	L2a|LINE|L2	239944	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_33270	chr15	42098758	42098993	+	5.73012	NA	intron (NM_001128608, intron 3 of 31)	intron (NM_001128608, intron 3 of 31)	-21408	NM_001114632	100137047	Hs.198161	NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_66496	chr3	9945036	9945132	+	5.72975	NA	exon (NM_153483, exon 3 of 17)	exon (NM_153483, exon 3 of 17)	572	NM_001193380	132014	Hs.390823	NM_144640	HPRD:17143	IL17RE	-	interleukin 17 receptor E	protein-coding
19-PTNLD28-TUMOR_peak_103765	chr9	73168762	73168925	+	5.72975	NA	intron (NM_001007471, intron 21 of 24)	intron (NM_001007471, intron 21 of 24)	-139270	NM_001206	687	Hs.150557	NM_001206	HPRD:04211	KLF9	BTEB|BTEB1	Kruppel-like factor 9	protein-coding
19-PTNLD28-TUMOR_peak_91226	chr7	7036317	7036456	+	5.72975	NA	Intergenic	L3|LINE|CR1	100031	NR_034022	100131257	Hs.551110	NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_57639	chr2	197855965	197856145	+	5.72975	NA	intron (NM_001195144, intron 27 of 27)	intron (NM_001195144, intron 27 of 27)	-64601	NM_024989	80055	Hs.229988	NM_024989	HPRD:10147	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding
19-PTNLD28-TUMOR_peak_29260	chr14	19640843	19640997	+	5.72867	NA	Intergenic	Intergenic	-9112	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_51001	chr2	9769526	9769629	+	5.72811	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	1607	NM_006826	10971	Hs.74405	NM_006826	HPRD:00886	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta	protein-coding
19-PTNLD28-TUMOR_peak_70695	chr3	129034451	129034539	+	5.72811	NA	promoter-TSS (NR_026991)	promoter-TSS (NR_026991)	-619	NR_026991	339942	Hs.450096	NM_001025468		H1FX-AS1	C3orf47	H1FX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57055	chr2	175209801	175209995	+	5.72547	NA	Intergenic	Intergenic	10077	NM_001145250	100131390	Hs.516603	NM_001145250		SP9	ZNF990	Sp9 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_74624	chr4	15914730	15914818	+	5.72547	NA	Intergenic	MIRb|SINE|MIR	25589	NM_005130	9982	Hs.1690	NM_005130	HPRD:06371	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_51726	chr2	27392839	27392927	+	5.72547	NA	Intergenic	LTR50|LTR|ERVL	20938	NM_175769	150921	Hs.591583	NM_175769		TCF23	OUT|TCF-23|bHLHa24	transcription factor 23	protein-coding
19-PTNLD28-TUMOR_peak_82768	chr5	141212745	141212912	+	5.72547	NA	Intergenic	Intergenic	32939	NM_001278615	5097	Hs.79769	NM_002587	HPRD:04692	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_10773	chr1	230268643	230268754	+	5.72547	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	65756	NM_004481	2590	Hs.743964	NM_004481	HPRD:03782	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_106085	chr9	128137092	128137203	+	5.72547	NA	Intergenic	Intergenic	75978	NM_001282681	26130	Hs.495134	NM_015635	HPRD:10886	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_58390	chr2	218875220	218875386	+	5.72547	NA	Intergenic	CpG	-24354	NR_034176	285180	Hs.570069	NM_198483	HPRD:13539	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_68821	chr3	65840418	65840621	+	5.72547	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	-38972	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44125	chr17	80569553	80569702	+	5.72547	NA	Intergenic	Intergenic	36784	NM_019613	56270	Hs.132161	NM_019613	HPRD:15669	WDR45B	WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
19-PTNLD28-TUMOR_peak_106547	chr9	135862024	135862212	+	5.72547	NA	exon (NM_001135031, exon 2 of 6)	exon (NM_001135031, exon 2 of 6)	8020	NM_001135031	8328	Hs.553160	NM_004188	HPRD:05088	GFI1B	BDPLT17	growth factor independent 1B transcription repressor	protein-coding
19-PTNLD28-TUMOR_peak_76761	chr4	119590489	119590591	+	5.72547	NA	Intergenic	Intergenic	-16034	NM_020961	57721	Hs.657806	NM_020961	HPRD:13879	METTL14	-	methyltransferase like 14	protein-coding
19-PTNLD28-TUMOR_peak_110322	chrY	27485372	27485575	+	5.72547	NA	Intergenic	Intergenic	-115985	NR_001555	84559	Hs.531603	NR_001555	ENSG00000172332	GOLGA2P2Y	GOLGA2LY|GOLGA2LY1|GOLGA2P2	golgin A2 pseudogene 2, Y-linked	pseudo
19-PTNLD28-TUMOR_peak_42755	chr17	60270714	60270984	+	5.72547	NA	Intergenic	MLT2C2|LTR|ERVL	82167	NR_027486	440452	Hs.448884	NR_027486	ENSG00000188755	TBC1D3P2	-	TBC1 domain family, member 3 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_21043	chr11	108816229	108816327	+	5.72547	NA	Intergenic	Intergenic	280526	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_109001	chrX	102318477	102318675	+	5.72547	NA	5' UTR (NM_018476, exon 2 of 3)	5' UTR (NM_018476, exon 2 of 3)	592	NM_018476	55859	Hs.334370	NM_018476	HPRD:06460	BEX1	BEX2|HBEX2|HGR74-h	brain expressed, X-linked 1	protein-coding
19-PTNLD28-TUMOR_peak_58392	chr2	218894437	218894525	+	5.72547	NA	Intergenic	L1ME3A|LINE|L1	-5176	NR_034176	285180	Hs.570069	NM_198483	HPRD:13539	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_96884	chr8	1973535	1973638	+	5.72547	NA	Intergenic	Intergenic	-19572	NM_003970	9172	Hs.443683	NM_003970	HPRD:04619	MYOM2	TTNAP	myomesin 2	protein-coding
19-PTNLD28-TUMOR_peak_82873	chr5	142534444	142534564	+	5.72547	NA	intron (NM_015071, intron 20 of 22)	intron (NM_015071, intron 20 of 22)	248750	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_71295	chr3	140298624	140298778	+	5.72547	NA	Intergenic	Intergenic	-71070	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_74207	chr4	6894113	6894331	+	5.72547	NA	Intergenic	Intergenic	-16949	NM_001113361	57533	Hs.518611	NM_020773	HPRD:11623	TBC1D14	-	TBC1 domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_46209	chr18	68025335	68025506	+	5.72547	NA	Intergenic	Intergenic	26407	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LOC101060542	-	uncharacterized LOC101060542	ncRNA
19-PTNLD28-TUMOR_peak_95137	chr7	128341597	128341708	+	5.72382	NA	Intergenic	LTR10A|LTR|ERV1	-7463	NR_104243	84691	Hs.732440	NM_032599	HPRD:14861	FAM71F1	FAM137A|NYD-SP18	family with sequence similarity 71, member F1	protein-coding
19-PTNLD28-TUMOR_peak_4244	chr1	68305532	68305790	+	5.72382	NA	intron (NR_040077, intron 1 of 9)	L1MEc|LINE|L1	-6506	NM_018841	55970	Hs.431101	NM_018841	HPRD:13592	GNG12	-	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
19-PTNLD28-TUMOR_peak_106732	chr9	139222629	139222866	+	5.72382	NA	promoter-TSS (NR_026964)	promoter-TSS (NR_026964)	815	NM_015597	26086	Hs.239370	NM_015597	HPRD:17075	GPSM1	AGS3	G-protein signaling modulator 1	protein-coding
19-PTNLD28-TUMOR_peak_43028	chr17	64947395	64947609	+	5.72320	NA	Intergenic	FRAM|SINE|Alu	-13478	NM_014405	27092	Hs.514423	NM_014405	HPRD:05911	CACNG4	-	calcium channel, voltage-dependent, gamma subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_82810	chr5	141704126	141704329	+	5.72320	NA	promoter-TSS (NM_001293290)	promoter-TSS (NM_001293290)	-245	NM_001293290	81848	Hs.323308	NM_030964	HPRD:10466	SPRY4	HH17	sprouty homolog 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_3322	chr1	47987083	47987171	+	5.72158	NA	Intergenic	Intergenic	85438	NM_004474	2306	Hs.166188	NM_004474	HPRD:03735	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
19-PTNLD28-TUMOR_peak_106127	chr9	129485640	129485882	+	5.72158	NA	Intergenic	CpG	-81524	NM_014007	23099	Hs.355581	NM_014007	HPRD:08346	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19-PTNLD28-TUMOR_peak_75922	chr4	81123931	81124035	+	5.72158	NA	exon (NM_001099403, exon 4 of 4)	exon (NM_001099403, exon 4 of 4)	5326	NM_001099403	56978	Hs.373642	NM_020226	HPRD:17904	PRDM8	PFM5	PR domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_74515	chr4	10782746	10782904	+	5.72158	NA	Intergenic	L1PA2|LINE|L1	-96439	NM_052964	116449	Hs.678910	NM_052964		CLNK	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
19-PTNLD28-TUMOR_peak_70630	chr3	128274304	128274668	+	5.72158	NA	Intergenic	CpG	20443	NM_007354	23434	Hs.194283	NM_007354	HPRD:13607	C3orf27	GR6	chromosome 3 open reading frame 27	ncRNA
19-PTNLD28-TUMOR_peak_94586	chr7	102839810	102839898	+	5.72158	NA	intron (NR_027768, intron 17 of 22)	MER44C|DNA|TcMar-Tigger	-50285	NM_001122838	222236	Hs.324271	NM_198990	HPRD:14809	NAPEPLD	FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
19-PTNLD28-TUMOR_peak_63157	chr21	33244785	33244988	+	5.71916	NA	promoter-TSS (NM_014586)	promoter-TSS (NM_014586)	-742	NM_014586	30811	Hs.109437	NM_014586	HPRD:09410	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
19-PTNLD28-TUMOR_peak_72801	chr3	184311536	184311712	+	5.71488	NA	Intergenic	Intergenic	32037	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_62394	chr20	57657379	57657467	+	5.71488	NA	Intergenic	Intergenic	-39522	NM_016045	51012	Hs.656865	NM_016045	HPRD:12771	SLMO2	C20orf45|PRELID3B|dJ543J19.5	slowmo homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_62249	chr20	55859097	55859203	+	5.71488	NA	Intergenic	AluJo|SINE|Alu	-17443	NM_001719	655	Hs.473163	NM_001719	HPRD:00212	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
19-PTNLD28-TUMOR_peak_51713	chr2	27272917	27273006	+	5.70839	NA	intron (NR_046730, intron 1 of 1)	CpG	171	NR_046730	100874031	Hs.132725	NR_046730		AGBL5-AS1	-	AGBL5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65443	chr22	38077676	38077788	+	5.70707	NA	Intergenic	Intergenic	-4612	NM_024313	79159	Hs.632778	NM_024313	HPRD:17537	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
19-PTNLD28-TUMOR_peak_90270	chr6	158481551	158481675	+	5.70707	NA	intron (NM_003898, intron 7 of 26)	intron (NM_003898, intron 7 of 26)	43533	NM_001178088	8871	Hs.434494	NM_003898	HPRD:10259	SYNJ2	INPP5H	synaptojanin 2	protein-coding
19-PTNLD28-TUMOR_peak_60259	chr20	24654436	24654543	+	5.70707	NA	Intergenic	Intergenic	204654	NM_024893	79953	Hs.124638	NM_024893	HPRD:12766	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
19-PTNLD28-TUMOR_peak_91254	chr7	8008567	8008673	+	5.70056	NA	promoter-TSS (NR_110018)	promoter-TSS (NR_110018)	-237	NR_110018	100505921	Hs.634989	NR_110018		LOC100505921	-	uncharacterized LOC100505921	ncRNA
19-PTNLD28-TUMOR_peak_39387	chr16	88804982	88805071	+	5.69984	NA	exon (NM_001142864, exon 6 of 51)	exon (NM_001142864, exon 6 of 51)	-4149	NR_120387	339059	Hs.449817	NR_120387	HPRD:08282	LOC339059	-	uncharacterized LOC339059	ncRNA
19-PTNLD28-TUMOR_peak_32579	chr15	23317422	23317532	+	5.69832	NA	intron (NR_002824, intron 17 of 34)	intron (NR_002824, intron 17 of 34)	60782	NR_002824	400322	Hs.458334	NR_002824	ENSG00000140181	HERC2P2	D15F37S3|MN7	hect domain and RLD 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_96118	chr7	144519487	144519615	+	5.69832	NA	intron (NM_022445, intron 2 of 8)	intron (NM_022445, intron 2 of 8)	13595	NM_022445	27010	Hs.660232	NM_022445	HPRD:06967	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_12333	chr10	21815124	21815572	+	5.69832	NA	promoter-TSS (NM_207371)	promoter-TSS (NM_207371)	-737	NM_207371	387640	Hs.350848	NM_207371	HPRD:16981	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_63677	chr21	43068726	43068847	+	5.69832	NA	Intergenic	Intergenic	-30676	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
19-PTNLD28-TUMOR_peak_4304	chr1	70033824	70034167	+	5.69832	NA	Intergenic	CpG	-191863	NM_020794	57554	Hs.479658	NM_020794	HPRD:09930	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
19-PTNLD28-TUMOR_peak_107418	chrX	3620274	3620390	+	5.69832	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	11343	NM_005044	5613	Hs.390788	NM_005044	HPRD:02097	PRKX	PKX1	protein kinase, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_38437	chr16	68679501	68679599	+	5.69832	NA	exon (NM_001793, exon 2 of 16)	exon (NM_001793, exon 2 of 16)	1399	NM_001793	1001	Hs.191842	NM_001793	HPRD:00227	CDH3	CDHP|HJMD|PCAD	cadherin 3, type 1, P-cadherin (placental)	protein-coding
19-PTNLD28-TUMOR_peak_39669	chr17	1961950	1962043	+	5.69832	NA	exon (NM_006497, exon 2 of 2)	exon (NM_006497, exon 2 of 2)	2392	NM_001098202	3090	Hs.72956	NM_006497	HPRD:04826	HIC1	ZBTB29|ZNF901|hic-1	hypermethylated in cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_26775	chr12	122200350	122200466	+	5.69777	NA	intron (NM_001080825, intron 6 of 11)	MLT1K|LTR|ERVL-MaLR	31186	NM_019034	54509	Hs.644504	NM_019034	HPRD:15246	RHOF	ARHF|RIF	ras homolog family member F (in filopodia)	protein-coding
19-PTNLD28-TUMOR_peak_84797	chr6	2543309	2543401	+	5.69777	NA	Intergenic	MER72|LTR|ERV1	91943	NM_152554	154386	Hs.680574	NM_152554		C6orf195	bA145H9.2	chromosome 6 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_66195	chr3	2494343	2494483	+	5.69777	NA	intron (NM_175607, intron 3 of 24)	intron (NM_175607, intron 3 of 24)	213900	NM_001206955	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_61380	chr20	44612194	44612285	+	5.69777	NA	Intergenic	Intergenic	-11406	NM_022095	63925	Hs.174193	NM_022095	HPRD:11709	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
19-PTNLD28-TUMOR_peak_105074	chr9	104985672	104985809	+	5.69777	NA	Intergenic	L1PA3|LINE|L1	-296179	NR_103830	414319	Hs.385790	NR_103830		LINC00587	C9orf107|bA785H23.1	long intergenic non-protein coding RNA 587	ncRNA
19-PTNLD28-TUMOR_peak_58983	chr2	235897834	235898142	+	5.69777	NA	intron (NM_014521, intron 1 of 5)	intron (NM_014521, intron 1 of 5)	37360	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_1890	chr1	29182418	29182525	+	5.69777	NA	intron (NM_000911, intron 1 of 2)	intron (NM_000911, intron 1 of 2)	-31132	NM_001166005	2035	Hs.175437	NM_004437	HPRD:00558	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19-PTNLD28-TUMOR_peak_79583	chr5	38640335	38640431	+	5.69777	NA	intron (NR_103554, intron 2 of 8)	intron (NR_103554, intron 2 of 8)	-44876	NM_002310	3977	Hs.133421	NM_002310	HPRD:01048	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_54501	chr2	101372073	101372162	+	5.69777	NA	Intergenic	L2c|LINE|L2	-64496	NM_002518	4862	Hs.156832	NM_002518	HPRD:09137	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
19-PTNLD28-TUMOR_peak_10892	chr1	232838727	232838935	+	5.69777	NA	Intergenic	L2a|LINE|L2	39630	NR_110683	101927683	Hs.520568	NR_110683	ENSG00000236497	LOC101927683	-	uncharacterized LOC101927683	ncRNA
19-PTNLD28-TUMOR_peak_21299	chr11	114217583	114217788	+	5.69777	NA	Intergenic	Intergenic	33076	NR_120567	101928940	Hs.409846	NR_120567	ENSG00000256195	LOC101928940	-	uncharacterized LOC101928940	ncRNA
19-PTNLD28-TUMOR_peak_22781	chr12	6663401	6663541	+	5.69557	NA	intron (NR_036467, intron 1 of 9)	intron (NR_036467, intron 1 of 9)	1778	NM_080730	25900	Hs.15243	NM_015438	HPRD:09988	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
19-PTNLD28-TUMOR_peak_36054	chr16	4986390	4986519	+	5.69557	NA	intron (NM_002705, intron 1 of 21)	CpG	682	NM_002705	5493	Hs.192233	NM_002705	HPRD:04187	PPL	-	periplakin	protein-coding
19-PTNLD28-TUMOR_peak_77024	chr4	128987294	128987437	+	5.69557	NA	intron (NM_001278604, intron 1 of 9)	AluY|SINE|Alu	4944	NM_178043	55132	Hs.657067	NM_018078	HPRD:10963	LARP1B	LARP2	La ribonucleoprotein domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_19974	chr11	73663287	73663392	+	5.69436	NA	intron (NM_153614, intron 1 of 7)	intron (NM_153614, intron 1 of 7)	1975	NM_153614	374407	Hs.567888	NM_153614	HPRD:15573	DNAJB13	RSPH16A|TSARG5|TSARG6	DnaJ (Hsp40) homolog, subfamily B, member 13	protein-coding
19-PTNLD28-TUMOR_peak_71870	chr3	155589350	155589611	+	5.69436	NA	intron (NM_003875, intron 1 of 15)	CpG	1155	NM_003875	8833	Hs.591314	NM_003875	HPRD:10927	GMPS	-	guanine monphosphate synthase	protein-coding
19-PTNLD28-TUMOR_peak_65350	chr22	36866425	36866529	+	5.69415	NA	intron (NM_012473, intron 3 of 3)	intron (NM_012473, intron 3 of 3)	11210	NM_012473	25828	Hs.211929	NM_012473	HPRD:07161	TXN2	MT-TRX|MTRX|TRX2	thioredoxin 2	protein-coding
19-PTNLD28-TUMOR_peak_65322	chr22	36635923	36636190	+	5.69415	NA	promoter-TSS (NM_030882)	promoter-TSS (NM_030882)	-56	NM_145637	23780	Hs.474740	NM_030882	HPRD:06263	APOL2	APOL-II|APOL3	apolipoprotein L, 2	protein-coding
19-PTNLD28-TUMOR_peak_43425	chr17	73446420	73446557	+	5.69310	NA	Intergenic	L1ME2|LINE|L1	-6176	NM_014738	9772	Hs.514474	NM_014738	HPRD:11068	KIAA0195	TMEM94	KIAA0195	protein-coding
19-PTNLD28-TUMOR_peak_3981	chr1	62506290	62506385	+	5.69310	NA	intron (NM_176877, intron 30 of 42)	L2a|LINE|L2	-154137	NM_001164835	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_66102	chr22	50689644	50689820	+	5.69310	NA	5' UTR (NM_032019, exon 1 of 20)	5' UTR (NM_032019, exon 1 of 20)	102	NM_032019	83933	Hs.26593	NM_032019	HPRD:09407	HDAC10	HD10	histone deacetylase 10	protein-coding
19-PTNLD28-TUMOR_peak_95595	chr7	135735617	135735711	+	5.69310	NA	Intergenic	Intergenic	-73460	NM_001128619	767558	Hs.602015	NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
19-PTNLD28-TUMOR_peak_89520	chr6	134273125	134273213	+	5.69310	NA	promoter-TSS (NM_001253676)	promoter-TSS (NM_001253676)	-139	NM_001253676	9519	Hs.486507	NM_004865		TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TBP-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4030	chr1	63783157	63783271	+	5.69310	NA	promoter-TSS (NR_038252)	promoter-TSS (NR_038252)	-313	NR_038252	199899	Hs.116210	NR_038252		LINC00466	-	long intergenic non-protein coding RNA 466	ncRNA
19-PTNLD28-TUMOR_peak_16128	chr10	126329964	126330163	+	5.69310	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-62534	NR_120631	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_53446	chr2	72438574	72438699	+	5.69310	NA	intron (NM_015189, intron 20 of 21)	intron (NM_015189, intron 20 of 21)	-63645	NM_019885	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_8761	chr1	183441348	183441598	+	5.68903	NA	promoter-TSS (NM_201568)	promoter-TSS (NM_201568)	-33	NM_201569	9887	Hs.591463	NM_014837	HPRD:10723	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_100602	chr8	125488569	125488661	+	5.68903	NA	intron (NM_007218, intron 1 of 1)	MIRc|SINE|MIR	1607	NM_007218	11236	Hs.744151	NM_007218		RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
19-PTNLD28-TUMOR_peak_44550	chr18	10455040	10455166	+	5.68767	NA	intron (NM_153000, intron 1 of 4)	CpG	478	NM_153000	147495	Hs.293274	NM_153000		APCDD1	B7323|DRAPC1|HHS|HTS|HYPT1	adenomatosis polyposis coli down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_24437	chr12	53432643	53432913	+	5.68767	NA	intron (NM_001417, intron 12 of 14)	intron (NM_001417, intron 12 of 14)	-8032	NM_198316	23371	Hs.6147	NM_015319	HPRD:16256	TENC1	C1-TEN|C1TEN|TNS2	tensin like C1 domain containing phosphatase (tensin 2)	protein-coding
19-PTNLD28-TUMOR_peak_50859	chr2	3714953	3715051	+	5.68767	NA	intron (NM_018436, intron 1 of 11)	intron (NM_018436, intron 1 of 11)	9216	NM_018436	55821	Hs.97899	NM_018436	HPRD:10642	ALLC	ALC	allantoicase	protein-coding
19-PTNLD28-TUMOR_peak_15717	chr10	115310263	115310394	+	5.68767	NA	promoter-TSS (NM_001177660)	promoter-TSS (NM_001177660)	-262	NM_001177660	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_61347	chr20	44259192	44259321	+	5.68767	NA	intron (NM_080753, intron 1 of 1)	intron (NM_080753, intron 1 of 1)	651	NM_147198	259240	Hs.249828	NM_147198	HPRD:15678	WFDC9	WAP9|dJ688G8.2	WAP four-disulfide core domain 9	protein-coding
19-PTNLD28-TUMOR_peak_68071	chr3	48770905	48771191	+	5.68767	NA	Intergenic	SVA_D|Other|Other	-16337	NR_027437	51447	Hs.595983	NM_016291	HPRD:07380	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_42094	chr17	47091788	47091888	+	5.68767	NA	intron (NM_006546, intron 2 of 14)	intron (NM_006546, intron 2 of 14)	17064	NM_001160423	10642	Hs.144936	NM_006546	HPRD:09752	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin-like growth factor 2 mRNA binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_60675	chr20	33479380	33479472	+	5.68767	NA	intron (NM_001076552, intron 2 of 18)	intron (NM_001076552, intron 2 of 18)	15098	NM_001076552	55902	Hs.517034	NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|dJ1161H23.1	acyl-CoA synthetase short-chain family member 2	protein-coding
19-PTNLD28-TUMOR_peak_20968	chr11	106973581	106973721	+	5.68767	NA	Intergenic	L1PB3|LINE|L1	-84480	NM_001256424	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_101187	chr8	135056642	135056730	+	5.68767	NA	Intergenic	Intergenic	157947	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_44815	chr18	19915718	19915887	+	5.68767	NA	Intergenic	Intergenic	82076	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_79946	chr5	55376997	55377216	+	5.68767	NA	Intergenic	L2c|LINE|L2	86111	NR_102755	441072	Hs.482141	NR_102755	ENSG00000227908	FLJ31104	-	uncharacterized LOC441072	ncRNA
19-PTNLD28-TUMOR_peak_32394	chr14	106466636	106466763	+	5.68767	NA	Intergenic	Intergenic	-28341	NR_002224	8755	Hs.662288	NR_002224	ENSG00000233988	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_100583	chr8	125241216	125241349	+	5.68767	NA	intron (NR_125420, intron 1 of 2)	L2a|LINE|L2	18357	NR_125420	101927588	Hs.617072	NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
19-PTNLD28-TUMOR_peak_51754	chr2	27683272	27683360	+	5.68767	NA	intron (NM_015662, intron 23 of 47)	LTR5_Hs|LTR|ERVK	18083	NM_173853	200634	Hs.59509	NM_173853	HPRD:17254	KRTCAP3	KCP3|MRV222|PRO9898	keratinocyte associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_104648	chr9	96067300	96067388	+	5.68767	NA	intron (NM_006648, intron 25 of 28)	intron (NM_006648, intron 25 of 28)	41352	NM_001098808	445577	Hs.575636	NM_001098808	ENSG00000204352	C9orf129	bA165J3.3	chromosome 9 open reading frame 129	protein-coding
19-PTNLD28-TUMOR_peak_8052	chr1	168343268	168343360	+	5.68767	NA	Intergenic	Intergenic	-1448	NR_030284	693142		NR_030284	miRBase:MI0003563	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
19-PTNLD28-TUMOR_peak_98367	chr8	40832200	40832288	+	5.68767	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-76901	NM_001135731	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_33745	chr15	58797935	58798136	+	5.68767	NA	intron (NM_000236, intron 1 of 8)	intron (NM_000236, intron 1 of 8)	-7101	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_3648	chr1	54930300	54930573	+	5.68767	NA	Intergenic	Intergenic	-58368	NM_018070	23648	Hs.476706	NM_018070	HPRD:09578	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_48778	chr19	36748335	36748663	+	5.68767	NA	Intergenic	SST1|Satellite|centr	-42513	NM_001042474	147929	Hs.596338	NM_152477	HPRD:15846	ZNF565	-	zinc finger protein 565	protein-coding
19-PTNLD28-TUMOR_peak_44545	chr18	10401612	10401700	+	5.68767	NA	Intergenic	MER117|DNA|hAT-Charlie	12711	NR_110775	101927350	Hs.572523	NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
19-PTNLD28-TUMOR_peak_47804	chr19	16394457	16394704	+	5.68459	NA	Intergenic	CpG	-41071	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_26412	chr12	113631993	113632102	+	5.68459	NA	Intergenic	AluSz6|SINE|Alu	8716	NM_032848	84934	Hs.524762	NM_032848	HPRD:08606	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
19-PTNLD28-TUMOR_peak_86873	chr6	33643088	33643275	+	5.68459	NA	intron (NM_002224, intron 24 of 57)	AluSz|SINE|Alu	36347	NM_032340	84300	Hs.745020	NM_032340	HPRD:12847	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
19-PTNLD28-TUMOR_peak_38388	chr16	67970719	67970825	+	5.68417	NA	promoter-TSS (NM_002801)	promoter-TSS (NM_002801)	8	NM_002801	5699	Hs.9661	NM_002801	HPRD:01465	PSMB10	LMP10|MECL1|beta2i	proteasome (prosome, macropain) subunit, beta type, 10	protein-coding
19-PTNLD28-TUMOR_peak_49800	chr19	49585053	49585177	+	5.68133	NA	Intergenic	MST-int|LTR|ERVL-MaLR	-3282	NM_001301069	6625	Hs.467097	NM_003089	HPRD:01617	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein 70kDa (U1)	protein-coding
19-PTNLD28-TUMOR_peak_8738	chr1	183245639	183245773	+	5.68133	NA	intron (NM_170706, intron 8 of 10)	intron (NM_170706, intron 8 of 10)	28303	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_93277	chr7	73739267	73739483	+	5.68133	NA	intron (NM_003388, intron 2 of 16)	intron (NM_003388, intron 2 of 16)	35570	NM_003388	7461	Hs.647018	NM_003388	HPRD:09140	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-GLY domain containing linker protein 2	protein-coding
19-PTNLD28-TUMOR_peak_105929	chr9	124818881	124818992	+	5.68133	NA	intron (NM_001139442, intron 1 of 8)	intron (NM_001139442, intron 1 of 8)	36949	NM_001139442	158135	Hs.438937	NM_194252	HPRD:10047	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase-like family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_19304	chr11	65414963	65415120	+	5.68133	NA	exon (NM_006747, exon 9 of 16)	exon (NM_006747, exon 9 of 16)	-1622	NR_039709	100616284		NR_039709		MIR4489	-	microRNA 4489	ncRNA
19-PTNLD28-TUMOR_peak_2805	chr1	41574734	41574832	+	5.67951	NA	intron (NM_001172222, intron 2 of 8)	intron (NM_001172222, intron 2 of 8)	50822	NM_001172222	22955	Hs.571874	NM_012236	HPRD:11540	SCMH1	Scml3	sex comb on midleg homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_61734	chr20	48553313	48553401	+	5.67951	NA	intron (NM_018683, intron 1 of 5)	CpG	443	NM_018683	55905	Hs.144949	NM_018683	HPRD:10329	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
19-PTNLD28-TUMOR_peak_43974	chr17	79481788	79481876	+	5.67364	NA	Intergenic	CpG-11343	-1940	NM_001199954	71	Hs.514581	NM_001614	HPRD:00017	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_103121	chr9	39940333	39940469	+	5.67356	NA	Intergenic	Intergenic	40055	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_7378	chr1	156882745	156882842	+	5.67343	NA	intron (NM_001080471, intron 18 of 22)	intron (NM_001080471, intron 18 of 22)	-7631	NM_144702	149499	Hs.491734	NM_144702	HPRD:08737	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
19-PTNLD28-TUMOR_peak_82061	chr5	131343680	131343768	+	5.67343	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	3631	NM_001205247	23305	Hs.14945	NM_015256	HPRD:09190	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long-chain family member 6	protein-coding
19-PTNLD28-TUMOR_peak_78274	chr4	184755157	184755245	+	5.67343	NA	Intergenic	Intergenic	-71308	NM_020225	56977	Hs.21958	NM_020225	HPRD:16823	STOX2	-	storkhead box 2	protein-coding
19-PTNLD28-TUMOR_peak_97540	chr8	21947149	21947430	+	5.67343	NA	intron (NM_022749, intron 1 of 16)	CpG	575	NM_022749	64760	Hs.491223	NM_022749	HPRD:17951	FAM160B2	RAI16	family with sequence similarity 160, member B2	protein-coding
19-PTNLD28-TUMOR_peak_46609	chr19	1847770	1847959	+	5.67343	NA	intron (NM_020695, intron 1 of 15)	CpG	588	NM_020695	57455	Hs.192477	NM_020695	HPRD:15478	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	REX1, RNA exonuclease 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_55448	chr2	122452156	122452244	+	5.67343	NA	intron (NR_037857, intron 2 of 3)	FLAM_C|SINE|Alu	42303	NM_032390	84365	Hs.367842	NM_032390	HPRD:17576	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
19-PTNLD28-TUMOR_peak_43878	chr17	78193361	78193488	+	5.67343	NA	promoter-TSS (NM_001166349)	promoter-TSS (NM_001166349)	775	NM_000199	6448	Hs.31074	NM_000199	HPRD:05590	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
19-PTNLD28-TUMOR_peak_10001	chr1	212840922	212841031	+	5.67343	NA	Intergenic	Intergenic	32351	NM_018664	55509	Hs.62919	NM_018664	HPRD:18081	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper transcription factor, ATF-like 3	protein-coding
19-PTNLD28-TUMOR_peak_23690	chr12	32720358	32720458	+	5.67343	NA	intron (NM_139241, intron 2 of 16)	MER20|DNA|hAT-Charlie	65367	NM_139241	121512	Hs.117835	NM_139241	HPRD:16891	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_4270	chr1	68640595	68640683	+	5.67343	NA	intron (NM_001193334, intron 1 of 10)	intron (NM_001193334, intron 1 of 10)	8654	NR_031664	100302279		NR_031664		MIR1262	MIRN1262|hsa-mir-1262	microRNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_5623	chr1	113498446	113498582	+	5.66582	NA	promoter-TSS (NR_103744)	promoter-TSS (NR_103744)	171	NM_001166496	6566	Hs.75231	NM_003051	HPRD:02816	SLC16A1	HHF7|MCT|MCT1	solute carrier family 16 (monocarboxylate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_22242	chr11	131300441	131300626	+	5.66552	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	60162	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_108943	chrX	97555838	97555936	+	5.66552	NA	Intergenic	L1PA3|LINE|L1	-736353	NR_125391	10824	Hs.654372	NR_125391		DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109077	chrX	106243088	106243188	+	5.66552	NA	exon (NM_024657, exon 1 of 17)	exon (NM_024657, exon 1 of 17)	336	NM_024657	79710	Hs.496544	NM_024657	HPRD:06757	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
19-PTNLD28-TUMOR_peak_83592	chr5	159402576	159402937	+	5.66552	NA	Intergenic	Intergenic	-33351	NM_001282500	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_73833	chr4	1514982	1515154	+	5.66552	NA	Intergenic	CpG	-114838	NM_001290079	54729	Hs.526396	NM_001290079		NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_63663	chr21	42879299	42879495	+	5.66552	NA	intron (NM_005656, intron 1 of 13)	CpG	595	NM_001135099	7113	Hs.439309	NM_005656	HPRD:03637	TMPRSS2	PP9284|PRSS10	transmembrane protease, serine 2	protein-coding
19-PTNLD28-TUMOR_peak_101978	chr9	2727097	2727216	+	5.66552	NA	intron (NM_133497, intron 1 of 1)	intron (NM_133497, intron 1 of 1)	9630	NM_133497	169522	Hs.622675	NM_133497	HPRD:12126	KCNV2	KV11.1|Kv8.2|RCD3B	potassium channel, subfamily V, member 2	protein-coding
19-PTNLD28-TUMOR_peak_5971	chr1	120218323	120218476	+	5.66552	NA	Intergenic	Intergenic	-28009	NM_001080470	90874	Hs.381105	NM_001080470	ENSG00000143067	ZNF697	-	zinc finger protein 697	protein-coding
19-PTNLD28-TUMOR_peak_98277	chr8	38571980	38572068	+	5.66493	NA	Intergenic	Intergenic	-13680	NM_001146216	6867	Hs.279245	NM_006283	HPRD:10391	TACC1	Ga55	transforming, acidic coiled-coil containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64982	chr22	29470005	29470095	+	5.66493	NA	intron (NM_001039570, intron 1 of 8)	CpG	984	NM_001039570	83999	Hs.229335	NM_032045	HPRD:11182	KREMEN1	KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_17012	chr11	8956770	8956899	+	5.66493	NA	Intergenic	Intergenic	-2281	NM_020643	56673	Hs.277349	NM_020643	HPRD:12604	C11orf16	-	chromosome 11 open reading frame 16	protein-coding
19-PTNLD28-TUMOR_peak_79323	chr5	31990843	31990964	+	5.66493	NA	intron (NM_178140, intron 2 of 23)	L2a|LINE|L2	-54638	NR_036241	100422874		NR_036241	miRBase:MI0015887	MIR4279	-	microRNA 4279	ncRNA
19-PTNLD28-TUMOR_peak_32929	chr15	32883634	32883813	+	5.66493	NA	Intergenic	MER20|DNA|hAT-Charlie	-1934	NM_001282494	643699	Hs.672754	NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family, member N	protein-coding
19-PTNLD28-TUMOR_peak_15643	chr10	112836274	112836362	+	5.66493	NA	promoter-TSS (NM_000681)	promoter-TSS (NM_000681)	-472	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_39640	chr17	1617994	1618230	+	5.66447	NA	promoter-TSS (NR_029494)	promoter-TSS (NR_029494)	-831	NR_029494	407004		NR_029494	miRBase:MI0000078	MIR22	MIRN22|hsa-mir-22|miR-22	microRNA 22	ncRNA
19-PTNLD28-TUMOR_peak_43375	chr17	73074731	73074845	+	5.66251	NA	Intergenic	Intergenic	-9034	NM_001271765	9121	Hs.592095	NM_004695	HPRD:04856	SLC16A5	MCT5|MCT6	solute carrier family 16 (monocarboxylate transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_64190	chr22	17048518	17048606	+	5.66251	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	25138	NM_014406	150160	Hs.128342	NM_014406	HPRD:16708	CCT8L2	CESK1	chaperonin containing TCP1, subunit 8 (theta)-like 2	protein-coding
19-PTNLD28-TUMOR_peak_61774	chr20	48838173	48838326	+	5.66251	NA	Intergenic	Intergenic	-29643	NR_125739	101927559	Hs.442486	NR_125739		CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64207	chr22	17639514	17639645	+	5.66251	NA	promoter-TSS (NR_024483)	promoter-TSS (NR_024483)	590	NM_033070	27440	Hs.26890	NM_017829	HPRD:16703	CECR5	-	cat eye syndrome chromosome region, candidate 5	protein-coding
19-PTNLD28-TUMOR_peak_17558	chr11	19265747	19265877	+	5.66214	NA	Intergenic	Intergenic	-2610	NM_001256372	79733	Hs.523526	NM_024680	HPRD:10981	E2F8	E2F-8	E2F transcription factor 8	protein-coding
19-PTNLD28-TUMOR_peak_26656	chr12	120755108	120755223	+	5.66214	NA	Intergenic	Intergenic	10427	NM_000928	5319	Hs.992	NM_000928	HPRD:01396	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2, group IB (pancreas)	protein-coding
19-PTNLD28-TUMOR_peak_41615	chr17	41446528	41446880	+	5.66214	NA	TTS (NR_027412)	TTS (NR_027412)	19562	NR_027412	100130581	Hs.546897	NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
19-PTNLD28-TUMOR_peak_11344	chr1	243417723	243417966	+	5.65650	NA	intron (NM_001042405, intron 1 of 18)	CpG	864	NM_001042405	9859	Hs.533635	NM_014812	HPRD:17172	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170kDa	protein-coding
19-PTNLD28-TUMOR_peak_38348	chr16	67514333	67514561	+	5.65311	NA	intron (NM_004691, intron 1 of 7)	CpG	642	NM_004691	9114	Hs.106876	NM_004691	HPRD:06121	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1	protein-coding
19-PTNLD28-TUMOR_peak_65142	chr22	31686273	31686398	+	5.65311	NA	intron (NM_001135911, intron 3 of 4)	AluSx|SINE|Alu	2185	NM_001135911	113791	Hs.26670	NM_052880	HPRD:17518	PIK3IP1	HGFL|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_52405	chr2	43395638	43395753	+	5.65311	NA	Intergenic	Intergenic	58050	NM_006887	678	Hs.503093	NM_006887	HPRD:18319	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_26933	chr12	124371465	124371709	+	5.65008	NA	intron (NM_207437, intron 50 of 77)	intron (NM_207437, intron 50 of 77)	85576	NM_025140	80212	Hs.713131	NM_025140	HPRD:16919	CCDC92	-	coiled-coil domain containing 92	protein-coding
19-PTNLD28-TUMOR_peak_82915	chr5	143353639	143353789	+	5.65008	NA	Intergenic	AluYb8|SINE|Alu	161988	NM_021182	57824	Hs.158320	NM_021182	HPRD:17089	HMHB1	HB-1|HLA-HB1	histocompatibility (minor) HB-1	protein-coding
19-PTNLD28-TUMOR_peak_109031	chrX	103172746	103172838	+	5.65008	NA	intron (NR_031657, intron 1 of 1).2	intron (NR_031657, intron 1 of 1).2	-44408	NM_194324	286527	Hs.56145	NM_194324	HPRD:17546	TMSB15B	Tbeta15b	thymosin beta 15B	protein-coding
19-PTNLD28-TUMOR_peak_86556	chr6	30988337	30988611	+	5.65008	NA	intron (NM_001198815, intron 2 of 4).6	LTR12C|LTR|ERV1	14745	NM_001198815	100507679	Hs.582967	NM_001198815	ENSG00000261272	MUC22	PBMUCL1	mucin 22	protein-coding
19-PTNLD28-TUMOR_peak_47618	chr19	14372867	14372980	+	5.65008	NA	Intergenic	AluY|SINE|Alu	-55926	NM_014921	22859	Hs.94229	NM_014921		LPHN1	CIRL1|CL1|LEC2	latrophilin 1	protein-coding
19-PTNLD28-TUMOR_peak_14908	chr10	93668378	93668472	+	5.65008	NA	exon (NM_152429, exon 2 of 2)	exon (NM_152429, exon 2 of 2)	833	NM_152429	143282	Hs.466120	NM_152429	HPRD:08499	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_49530	chr19	47272109	47272203	+	5.65008	NA	Intergenic	LTR5B|LTR|ERVK	15978	NM_001145145	6510	Hs.631582	NM_005628	HPRD:00173	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_75965	chr4	82421034	82421244	+	5.65008	NA	Intergenic	Intergenic	-28057	NM_001300736	153020	Hs.591696	NM_152545	HPRD:17955	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_56056	chr2	139587049	139587138	+	5.65008	NA	Intergenic	Intergenic	-49282	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_60561	chr20	31879600	31879811	+	5.65008	NA	intron (NM_033197, intron 5 of 15)	intron (NM_033197, intron 5 of 15)	8764	NM_033197	92747	Hs.65551	NM_033197	HPRD:12740	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_62335	chr20	56641183	56641303	+	5.65008	NA	Intergenic	MER5B|DNA|hAT-Charlie	-84740	NM_178456	128602	Hs.43977	NM_178456	HPRD:12787	C20orf85	LLC1|bA196N14.1	chromosome 20 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_98976	chr8	62186276	62186503	+	5.65008	NA	Intergenic	L1PA2|LINE|L1	-14136	NM_173519	157807	Hs.591874	NM_173519	HPRD:14581	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
19-PTNLD28-TUMOR_peak_104939	chr9	101366402	101366694	+	5.65008	NA	intron (NM_005458, intron 1 of 18)	intron (NM_005458, intron 1 of 18)	104931	NM_005458	9568	Hs.198612	NM_005458	HPRD:09552	GABBR2	GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_91667	chr7	24976232	24976384	+	5.65008	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	43523	NM_015550	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_109032	chrX	103173265	103173775	+	5.65008	NA	intron (NR_031657, intron 1 of 1).2	CpG	-43680	NM_194324	286527	Hs.56145	NM_194324	HPRD:17546	TMSB15B	Tbeta15b	thymosin beta 15B	protein-coding
19-PTNLD28-TUMOR_peak_95927	chr7	141950683	141950837	+	5.65008	NA	Intergenic	ERVL-E-int|LTR|ERVL	-3874	NR_024346	100289017	Hs.641504	NR_024346	ENSG00000240268	MOXD2P	MOXD2	monooxygenase, DBH-like 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_15023	chr10	97295783	97296106	+	5.65008	NA	intron (NM_001290294, intron 1 of 31)	intron (NM_001290294, intron 1 of 31)	25233	NM_015385	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_1921	chr1	29717088	29717298	+	5.65008	NA	Intergenic	Intergenic	-40567	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LOC101928460	-	uncharacterized LOC101928460	ncRNA
19-PTNLD28-TUMOR_peak_28912	chr13	103935398	103935593	+	5.65008	NA	promoter-TSS (NR_049840)	promoter-TSS (NR_049840)	-647	NR_049840	100847092		NR_049840		MIR548AS	-	microRNA 548as	ncRNA
19-PTNLD28-TUMOR_peak_17284	chr11	13021123	13021495	+	5.65008	NA	Intergenic	Intergenic	-9661	NM_001080521	644943	Hs.134650	NM_001080521		RASSF10	-	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
19-PTNLD28-TUMOR_peak_5749	chr1	116070937	116071056	+	5.65008	NA	Intergenic	LTR30|LTR|ERV1	-113578	NM_001172411	81839	Hs.515130	NM_138959	HPRD:18279	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
19-PTNLD28-TUMOR_peak_68764	chr3	64129524	64129667	+	5.65008	NA	intron (NM_198859, intron 7 of 7)	intron (NM_198859, intron 7 of 7)	40449	NR_046701	100874242	Hs.668874	NR_046701		PRICKLE2-AS2	-	PRICKLE2 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_94256	chr7	99623906	99623994	+	5.65008	NA	intron (NM_001287054, intron 5 of 7)	Tigger3|DNA|TcMar-Tigger	10755	NM_001287054	7586	Hs.615360	NM_003439	HPRD:03161	ZKSCAN1	9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
19-PTNLD28-TUMOR_peak_78893	chr5	10467537	10467643	+	5.65008	NA	Intergenic	MER4C|LTR|ERV1	-10559	NR_106747	102465138		NR_106747		MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
19-PTNLD28-TUMOR_peak_47413	chr19	12476009	12476145	+	5.64872	NA	intron (NM_030824, intron 1 of 5)	CpG	398	NM_030824	79973	Hs.253193	NM_030824	HPRD:15795	ZNF442	-	zinc finger protein 442	protein-coding
19-PTNLD28-TUMOR_peak_60309	chr20	25237079	25237186	+	5.64872	NA	intron (NM_002862, intron 1 of 19)	AluSz6|SINE|Alu	8426	NM_002862	5834	Hs.368157	NM_002862	HPRD:00720	PYGB	GPBB	phosphorylase, glycogen; brain	protein-coding
19-PTNLD28-TUMOR_peak_13710	chr10	58121379	58121647	+	5.64860	NA	promoter-TSS (NM_007057)	promoter-TSS (NM_007057)	-479	NM_032997	11130	Hs.591363	NM_007057	HPRD:18366	ZWINT	HZwint-1|KNTC2AP|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
19-PTNLD28-TUMOR_peak_82250	chr5	133906776	133906899	+	5.64860	NA	intron (NM_001289984, intron 9 of 10)	MLT1C|LTR|ERVL-MaLR	45039	NM_015288	23338	Hs.732155	NM_015288	HPRD:15124	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
19-PTNLD28-TUMOR_peak_46516	chr19	800587	800692	+	5.64727	NA	intron (NM_002819, intron 2 of 14)	intron (NM_002819, intron 2 of 14)	3247	NM_002819	5725	Hs.172550	NM_002819	HPRD:02823	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_55740	chr2	131863301	131863393	+	5.64727	NA	intron (NR_049791, intron 1 of 6)	CpG	927	NM_017958	55041	Hs.469944	NM_017958	HPRD:15144	PLEKHB2	EVT2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
19-PTNLD28-TUMOR_peak_40352	chr17	16918093	16918255	+	5.64121	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-27900	NM_201274	23164	Hs.462341	NM_015134	HPRD:17591	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_20803	chr11	100558363	100558519	+	5.63957	NA	promoter-TSS (NM_152432)	promoter-TSS (NM_152432)	34	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_94271	chr7	99738948	99739052	+	5.63957	NA	Intergenic	Intergenic	-7530	NM_001008395	389541	Hs.406520	NM_001008395	HPRD:17380	LAMTOR4	C7orf59	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding
19-PTNLD28-TUMOR_peak_59587	chr20	3856354	3856523	+	5.63957	NA	non-coding (NR_037921, exon 6 of 6)	non-coding (NR_037921, exon 6 of 6)	-13048	NM_024960	80025	Hs.516859	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_103697	chr9	71995930	71996022	+	5.63957	NA	intron (NM_004816, intron 6 of 10)	intron (NM_004816, intron 6 of 10)	51735	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_109830	chrX	152073160	152073275	+	5.63686	NA	Intergenic	Intergenic	-9769	NM_001178106	7739	Hs.16622	NM_007150	HPRD:02306	ZNF185	-	zinc finger protein 185 (LIM domain)	protein-coding
19-PTNLD28-TUMOR_peak_21485	chr11	118134532	118134636	+	5.63686	NA	intron (NM_144765, intron 1 of 4)	intron (NM_144765, intron 1 of 4)	667	NM_005797	10205	Hs.116651	NM_005797	HPRD:05340	MPZL2	EVA|EVA1	myelin protein zero-like 2	protein-coding
19-PTNLD28-TUMOR_peak_48573	chr19	34293031	34293119	+	5.63686	NA	intron (NM_001129995, intron 4 of 6)	intron (NM_001129995, intron 4 of 6)	5324	NM_024076	79047	Hs.221873	NM_024076	HPRD:13765	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_64158	chr22	16282230	16282322	+	5.63686	NA	exon (NM_001136213, exon 3 of 11)	exon (NM_001136213, exon 3 of 11)	5661	NM_001136213	23784	Hs.581075	NM_001004053		POTEH	A26C3|ACTBL1|CT104.7|POTE22	POTE ankyrin domain family, member H	protein-coding
19-PTNLD28-TUMOR_peak_80723	chr5	74161440	74161598	+	5.63686	NA	intron (NM_015566, intron 1 of 12)	intron (NM_015566, intron 1 of 12)	693	NR_046462	26049	Hs.91662	NM_015566	ENSG00000198780	FAM169A	SLAP75	family with sequence similarity 169, member A	protein-coding
19-PTNLD28-TUMOR_peak_32127	chr14	102653940	102654281	+	5.63686	NA	intron (NM_001242418, intron 1 of 2)	intron (NM_001242418, intron 1 of 2)	47921	NM_001242416	91833	Hs.36859	NM_144574	HPRD:11679	WDR20	DMR	WD repeat domain 20	protein-coding
19-PTNLD28-TUMOR_peak_54852	chr2	110818277	110818384	+	5.63686	NA	Intergenic	MER34-int|LTR|ERV1	9289	NR_036225	100422994		NR_036225	miRBase:MI0015871	MIR4267	-	microRNA 4267	ncRNA
19-PTNLD28-TUMOR_peak_441	chr1	7515060	7515150	+	5.63686	NA	intron (NM_015215, intron 5 of 22)	MIRb|SINE|MIR	-316224	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_44322	chr18	3284106	3284299	+	5.63360	NA	Intergenic	Intergenic	21485	NM_001144945	103910	Hs.190086	NM_033546	HPRD:10095	MYL12B	MLC-B|MRLC2	myosin, light chain 12B, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_41354	chr17	38278875	38278963	+	5.63360	NA	5' UTR (NM_001012241, exon 1 of 10)	5' UTR (NM_001012241, exon 1 of 10)	129	NM_001012241	339287	Hs.532786	NM_001012241	ENSG00000188895	MSL1	MSL-1|hMSL1	male-specific lethal 1 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_58497	chr2	220283142	220283230	+	5.63360	NA	promoter-TSS (NM_001927)	promoter-TSS (NM_001927)	87	NM_001927	1674	Hs.594952	NM_001927	HPRD:00514	DES	CSM1|CSM2|LGMD2R	desmin	protein-coding
19-PTNLD28-TUMOR_peak_10948	chr1	233856152	233856246	+	5.63360	NA	Intergenic	MIR|SINE|MIR	96301	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
19-PTNLD28-TUMOR_peak_19940	chr11	73053938	73054037	+	5.63360	NA	intron (NM_014786, intron 1 of 20)	CpG	-33418	NM_152222	84957	Hs.533720	NM_032871	HPRD:15544	RELT	TNFRSF19L|TRLT	RELT tumor necrosis factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_82014	chr5	128795559	128795737	+	5.63360	NA	promoter-TSS (NM_133638)	promoter-TSS (NM_133638)	-455	NM_133638	171019	Hs.23751	NM_133638	HPRD:06334	ADAMTS19	-	ADAM metallopeptidase with thrombospondin type 1 motif, 19	protein-coding
19-PTNLD28-TUMOR_peak_79163	chr5	17414184	17414358	+	5.63360	NA	Intergenic	Intergenic	-26852	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_9278	chr1	201885885	201885973	+	5.63360	NA	intron (NM_012134, intron 1 of 2)	intron (NM_012134, intron 1 of 2)	28124	NM_198149	149345	Hs.632471	NM_198149	HPRD:12729	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
19-PTNLD28-TUMOR_peak_4602	chr1	85600963	85601062	+	5.63360	NA	Intergenic	AluJo|SINE|Alu	1535	NR_039619	100616481		NR_039619	miRBase:MI0016760	MIR4423	-	microRNA 4423	ncRNA
19-PTNLD28-TUMOR_peak_32149	chr14	103021648	103021745	+	5.63360	NA	Intergenic	CpG	15715	NR_036192	100422954		NR_036192	miRBase:MI0015837	MIR4309	-	microRNA 4309	ncRNA
19-PTNLD28-TUMOR_peak_67232	chr3	25705763	25705881	+	5.63300	NA	promoter-TSS (NM_001068)	promoter-TSS (NM_001068)	41	NM_001068	7155	Hs.475733	NM_001068	HPRD:00537	TOP2B	TOPIIB|top2beta	topoisomerase (DNA) II beta 180kDa	protein-coding
19-PTNLD28-TUMOR_peak_79167	chr5	17583711	17583833	+	5.62918	NA	Intergenic	AluSx|SINE|Alu	-196353	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_71863	chr3	155462796	155462926	+	5.62502	NA	Intergenic	Intergenic	-40864	NM_014996	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_75453	chr4	57941583	57941708	+	5.62502	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-34283	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63575	chr21	40685729	40685891	+	5.62502	NA	promoter-TSS (NM_018963)	promoter-TSS (NM_018963)	-23	NR_111942	103091865	Hs.190548	NR_111942		BRWD1-IT2	-	BRWD1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_95950	chr7	142196946	142197094	+	5.62366	NA	Intergenic	Intergenic	-177111	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_16603	chr11	1783715	1783962	+	5.62366	NA	intron (NM_001909, intron 1 of 8)	intron (NM_001909, intron 1 of 8)	1384	NM_001909	1509	Hs.654447	NM_001909	HPRD:00291	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
19-PTNLD28-TUMOR_peak_44006	chr17	79689288	79689510	+	5.62366	NA	Intergenic	Intergenic	10133	NM_001270953	1468	Hs.548187	NM_012140	HPRD:08424	SLC25A10	DIC	solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_31248	chr14	74238659	74238826	+	5.62366	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-11741	NM_194278	91748	Hs.594157	NM_194278	HPRD:12648	ELMSAN1	C14orf117|C14orf43|LSR68|c14_5541	ELM2 and Myb/SANT-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76489	chr4	106630292	106630435	+	5.62366	NA	promoter-TSS (NM_020395)	promoter-TSS (NM_020395)	422	NM_024751	79807	Hs.161429	NM_024751	HPRD:07823	GSTCD	-	glutathione S-transferase, C-terminal domain containing	protein-coding
19-PTNLD28-TUMOR_peak_35997	chr16	4424240	4424361	+	5.62097	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	2451	NM_138440	114990	Hs.372579	NM_138440	HPRD:10587	VASN	SLITL2	vasorin	protein-coding
19-PTNLD28-TUMOR_peak_54338	chr2	97538914	97539053	+	5.62037	NA	Intergenic	Intergenic	-3248	NM_017789	54910	Hs.516220	NM_017789	HPRD:07257	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding
19-PTNLD28-TUMOR_peak_98115	chr8	33185653	33185805	+	5.61486	NA	Intergenic	Intergenic	144935	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_17915	chr11	33710826	33710924	+	5.61439	NA	Intergenic	LTR79|LTR|ERVL	11411	NM_001166692	100131378	Hs.709466	NM_001166692		C11orf91	-	chromosome 11 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_17929	chr11	33757082	33757285	+	5.61405	NA	intron (NM_203329, intron 1 of 4)	AluSg|SINE|Alu	842	NM_203329	966	Hs.278573	NM_000611		CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule, complement regulatory protein	protein-coding
19-PTNLD28-TUMOR_peak_73528	chr3	195636014	195636294	+	5.61405	NA	promoter-TSS (NM_005781)	promoter-TSS (NM_005781)	-274	NM_005781	10188	Hs.518513	NM_005781	HPRD:06104	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase, non-receptor, 2	protein-coding
19-PTNLD28-TUMOR_peak_10112	chr1	219834131	219834394	+	5.61290	NA	Intergenic	Intergenic	-212357	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_65285	chr22	35952897	35952985	+	5.61290	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	15589	NM_014310	23551	Hs.474711	NM_014310	HPRD:15210	RASD2	MGC:4834|Rhes|TEM2	RASD family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_89739	chr6	142286337	142286581	+	5.61290	NA	Intergenic	LTR38|LTR|ERV1	123477	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_91572	chr7	22556855	22557094	+	5.61290	NA	Intergenic	Intergenic	-17073	NM_207342	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_45217	chr18	33336611	33336699	+	5.61290	NA	Intergenic	Intergenic	102122	NM_020474	2589	Hs.514806	NM_020474	HPRD:03781	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_28366	chr13	57309524	57309612	+	5.61290	NA	Intergenic	LTR12C|LTR|ERV1	-405484	NM_001130404	729233	Hs.723090	NM_001130404	ENSG00000204918	PRR20B	-	proline rich 20B	protein-coding
19-PTNLD28-TUMOR_peak_79817	chr5	50948898	50949045	+	5.61290	NA	Intergenic	Intergenic	-269805	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
19-PTNLD28-TUMOR_peak_108440	chrX	55516217	55516305	+	5.61290	NA	promoter-TSS (NM_201286)	promoter-TSS (NM_201286)	-630	NM_201286	158880	Hs.40061	NM_201286	HPRD:07167	USP51	-	ubiquitin specific peptidase 51	protein-coding
19-PTNLD28-TUMOR_peak_34511	chr15	75074383	75074474	+	5.61290	NA	promoter-TSS (NM_001127190)	promoter-TSS (NM_001127190)	3	NM_001127190	1445	Hs.77793	NM_004383	HPRD:00496	CSK	-	c-src tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_98740	chr8	53032502	53032605	+	5.61290	NA	intron (NM_014682, intron 23 of 25)	L3|LINE|CR1	-220807	NM_001286783	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_81733	chr5	118691730	118692020	+	5.61290	NA	intron (NM_001286813, intron 2 of 2)	intron (NM_001286813, intron 2 of 2)	360	NM_014350	25816	Hs.618488	NM_014350		TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	tumor necrosis factor, alpha-induced protein 8	protein-coding
19-PTNLD28-TUMOR_peak_102813	chr9	34715658	34715838	+	5.61290	NA	Intergenic	Intergenic	-5584	NM_002989	6366	Hs.57907	NM_002989	HPRD:04113	CCL21	6Ckine|CKb9|ECL|SCYA21|SLC|TCA4	chemokine (C-C motif) ligand 21	protein-coding
19-PTNLD28-TUMOR_peak_31454	chr14	78066396	78066727	+	5.61290	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	16549	NM_004863	9517	Hs.435661	NM_004863	HPRD:05755	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase, long chain base subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_38665	chr16	72883000	72883159	+	5.61290	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	199195	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_55546	chr2	128017089	128017225	+	5.61290	NA	intron (NM_000122, intron 13 of 14)	intron (NM_000122, intron 13 of 14)	34595	NM_000122	2071	Hs.469872	NM_000122	HPRD:00593	ERCC3	BTF2|GTF2H|RAD25|TFIIH|XPB	excision repair cross-complementation group 3	protein-coding
19-PTNLD28-TUMOR_peak_14056	chr10	71396813	71396922	+	5.61290	NA	Intergenic	Intergenic	6864	NM_145306	219738	Hs.522992	NM_145306	HPRD:12573	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
19-PTNLD28-TUMOR_peak_80573	chr5	71673884	71674045	+	5.61269	NA	Intergenic	Intergenic	57770	NM_001284404	79810	Hs.126906	NM_024754	HPRD:15193	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
19-PTNLD28-TUMOR_peak_62541	chr20	61505611	61505728	+	5.61269	NA	Intergenic	LTR13|LTR|ERVK	-12554	NM_006602	10732	Hs.126248	NM_006602	HPRD:05297	TCFL5	CHA|E2BP-1|Figlb|bHLHe82	transcription factor-like 5 (basic helix-loop-helix)	protein-coding
19-PTNLD28-TUMOR_peak_55733	chr2	131792430	131792556	+	5.61269	NA	intron (NM_032995, intron 4 of 11)	CpG	58511	NM_001009993	130074	Hs.534679	NM_001009993	HPRD:17295	FAM168B	MANI	family with sequence similarity 168, member B	protein-coding
19-PTNLD28-TUMOR_peak_81923	chr5	125929922	125930039	+	5.61269	NA	intron (NM_001182, intron 1 of 17)	intron (NM_001182, intron 1 of 17)	1102	NM_001182	501	Hs.483239	NM_001182	HPRD:00124	ALDH7A1	ATQ1|EPD|PDE	aldehyde dehydrogenase 7 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_55282	chr2	119981729	119982009	+	5.61269	NA	intron (NM_001008410, intron 1 of 4)	intron (NM_001008410, intron 1 of 4)	485	NM_018234	55240	Hs.647822	NM_018234	HPRD:10285	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2	STEAP family member 3, metalloreductase	protein-coding
19-PTNLD28-TUMOR_peak_19540	chr11	67652087	67652186	+	5.61269	NA	Intergenic	HERVS71-int|LTR|ERV1	-79329	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_36365	chr16	12704138	12704282	+	5.60912	NA	Intergenic	Intergenic	-109968	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_43297	chr17	72237677	72237775	+	5.60912	NA	intron (NM_032646, intron 4 of 13)	intron (NM_032646, intron 4 of 13)	-6779	NM_052869	94015	Hs.27935	NM_032646	HPRD:16394	TTYH2	C17orf29	tweety family member 2	protein-coding
19-PTNLD28-TUMOR_peak_2180	chr1	33338382	33338470	+	5.60912	NA	promoter-TSS (NM_001171941)	promoter-TSS (NM_001171941)	-333	NM_001171941	252995	Hs.524234	NM_153756	HPRD:17009	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_22552	chr12	3475243	3475362	+	5.60912	NA	Intergenic	CpG	-15213	NM_001256536	56341	Hs.504530	NM_019854	HPRD:11029	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_17171	chr11	11630365	11630541	+	5.60912	NA	intron (NM_198516, intron 1 of 10)	intron (NM_198516, intron 1 of 10)	13108	NM_198516	374378	Hs.655152	NM_198516	HPRD:13564	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
19-PTNLD28-TUMOR_peak_102226	chr9	14251890	14252039	+	5.60912	NA	intron (NM_005596, intron 2 of 8)	intron (NM_005596, intron 2 of 8)	62081	NM_005596	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_17468	chr11	17526251	17526392	+	5.60912	NA	intron (NM_153676, intron 19 of 26)	intron (NM_153676, intron 19 of 26)	-27929	NM_000352	6833	Hs.54470	NM_000352	HPRD:02741	ABCC8	ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|SUR1delta2|TNDM2	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding
19-PTNLD28-TUMOR_peak_63927	chr21	45590876	45591041	+	5.60912	NA	Intergenic	Intergenic	37464	NM_004649	8209	Hs.413482	NM_004649	HPRD:09044	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_32541	chr15	22553158	22553246	+	5.60910	NA	intron (NR_033735, intron 1 of 2)	intron (NR_033735, intron 1 of 2)	6637	NR_033735	646396	Hs.451294	NR_033735		REREP3	-	arginine-glutamic acid dipeptide (RE) repeats pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_28564	chr13	78711908	78711996	+	5.60910	NA	intron (NR_047001, intron 1 of 5)	intron (NR_047001, intron 1 of 5)	82962	NR_047001	100874222	Hs.493062	NR_047001	ENSG00000234377	RNF219-AS1	POU4F1-AS1	RNF219 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_72387	chr3	172345367	172345455	+	5.60910	NA	Intergenic	L2b|LINE|L2	83597	NM_001146278	57552	Hs.444099	NM_020792	HPRD:07489	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_30637	chr14	61527665	61527768	+	5.60910	NA	intron (NR_033344, intron 15 of 16)	L1HS|LINE|L1	79751	NR_033344	145389	Hs.200738	NM_153811	HPRD:15382	SLC38A6	NAT-1	solute carrier family 38, member 6	protein-coding
19-PTNLD28-TUMOR_peak_93779	chr7	86561567	86561697	+	5.60910	NA	intron (NM_001291991, intron 7 of 20)	intron (NM_001291991, intron 7 of 20)	33659	NM_152748	222223	Hs.208093	NM_152748	HPRD:13405	KIAA1324L	EIG121L	KIAA1324-like	protein-coding
19-PTNLD28-TUMOR_peak_17635	chr11	20605813	20605901	+	5.60910	NA	Intergenic	Intergenic	-15089	NM_004211	9152	Hs.136557	NM_004211		SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 (neurotransmitter transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_101427	chr8	141908429	141908541	+	5.60910	NA	intron (NM_005607, intron 2 of 31)	intron (NM_005607, intron 2 of 31)	102927	NM_153831	5747	Hs.395482	NM_005607	HPRD:02859	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_13936	chr10	68217546	68217680	+	5.60910	NA	intron (NM_013266, intron 11 of 17)	LTR75|LTR|ERVL	-468179	NM_178011	347731	Hs.652155	NM_178011		LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
19-PTNLD28-TUMOR_peak_38574	chr16	70805102	70805293	+	5.60910	NA	intron (NR_034083, intron 5 of 5)	intron (NR_034083, intron 5 of 5)	16234	NR_034083	100130894	Hs.678899	NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69186	chr3	78546355	78546456	+	5.60910	NA	Intergenic	Intergenic	522204	NM_001145845	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_91961	chr7	33972546	33972667	+	5.60910	NA	intron (NM_133468, intron 3 of 15)	intron (NM_133468, intron 3 of 15)	28083	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_32751	chr15	29604853	29604952	+	5.60910	NA	intron (NM_015307, intron 2 of 10)	Tigger1|DNA|TcMar-Tigger	-42882	NM_138704	56160	Hs.94011	NM_138704	HPRD:10503	NDNL2	HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3	necdin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_33814	chr15	60515403	60515615	+	5.60910	NA	Intergenic	Intergenic	174676	NM_001002858	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_21851	chr11	124595678	124595975	+	5.60910	NA	Intergenic	Plat_L3|LINE|CR1	-14003	NM_001126181	4900	Hs.524116	NM_006176	HPRD:03828	NRGN	RC3|hng	neurogranin (protein kinase C substrate, RC3)	protein-coding
19-PTNLD28-TUMOR_peak_28710	chr13	95780518	95780682	+	5.60910	NA	intron (NM_001105515, intron 19 of 20)	intron (NM_001105515, intron 19 of 20)	173087	NM_001105515	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_12489	chr10	25210409	25210501	+	5.60910	NA	intron (NM_001282786, intron 3 of 7)	intron (NM_001282786, intron 3 of 7)	31118	NM_020200	56952	Hs.405619	NM_020200	HPRD:17917	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61163	chr20	41663644	41663789	+	5.60910	NA	intron (NM_133170, intron 1 of 31)	intron (NM_133170, intron 1 of 31)	154841	NM_007050	11122	Hs.526879	NM_007050	HPRD:06690	PTPRT	RPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding
19-PTNLD28-TUMOR_peak_92193	chr7	43099127	43099295	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-52987	NM_001287059	23072	Hs.164453	NM_015052		HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_34542	chr15	75370113	75370240	+	5.60910	NA	Intergenic	LTR16E2|LTR|ERVL	34566	NM_001301105	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_20974	chr11	107069377	107069635	+	5.60910	NA	Intergenic	Intergenic	-180335	NM_001256424	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_50623	chr19_gl000209_random	156740	156873	+	5.60910	NA	Intergenic	Intergenic	25373	NM_001291695	100132285	Hs.512572	NM_012312		KIR2DS2	183ActI|CD158J|CD158b|NKAT-5|NKAT5|cl-49	killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2	protein-coding
19-PTNLD28-TUMOR_peak_32841	chr15	31186637	31186816	+	5.60910	NA	Intergenic	Intergenic	-9329	NM_001146095	22909	Hs.584863	NM_014967	HPRD:17205	FAN1	KIAA1018|KMIN|MTMR15	FANCD2/FANCI-associated nuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_28226	chr13	49882501	49882628	+	5.60910	NA	TTS (NM_030925)	TTS (NM_030925)	60517	NM_030911	81602	Hs.388220	NM_030911	HPRD:16693	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_21514	chr11	118511591	118511686	+	5.60910	NA	intron (NM_001144759, intron 12 of 20)	intron (NM_001144759, intron 12 of 20)	-3080	NR_106773	102466719		NR_106773		MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
19-PTNLD28-TUMOR_peak_10024	chr1	214296592	214296680	+	5.60910	NA	Intergenic	Intergenic	134792	NM_002763	5629	Hs.741808	NM_002763	HPRD:03330	PROX1	-	prospero homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_109509	chrX	132780436	132780672	+	5.60910	NA	intron (NM_001164618, intron 6 of 7)	intron (NM_001164618, intron 6 of 7)	-231349	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
19-PTNLD28-TUMOR_peak_74542	chr4	12411494	12411582	+	5.60910	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-981001	NM_005114	9957	Hs.507348	NM_005114		HS3ST1	3OST|3OST1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_107782	chrX	22092114	22092280	+	5.60910	NA	intron (NM_001282754, intron 3 of 20)	intron (NM_001282754, intron 3 of 20)	41635	NM_001282754	5251	Hs.495834	NM_000444	HPRD:02387	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase homolog, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_76797	chr4	120070346	120070489	+	5.60910	NA	intron (NM_016599, intron 2 of 5)	L1MD1|LINE|L1	13478	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_17071	chr11	10255273	10255442	+	5.60910	NA	intron (NM_030962, intron 1 of 39)	ERV3-16A3_LTR|LTR|ERVL	60397	NM_030962	81846	Hs.577252	NM_030962	HPRD:09649	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_77918	chr4	165304637	165304851	+	5.60910	NA	promoter-TSS (NM_001166373)	promoter-TSS (NM_001166373)	-337	NM_001166373	55016	Hs.592804	NM_017923	HPRD:07940	MARCH1	MARCH-I|RNF171	membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_72827	chr3	184672873	184673013	+	5.60910	NA	intron (NM_001009921, intron 35 of 46)	LTR13A|LTR|ERVK	143012	NM_015303	23355	Hs.269263	NM_015303	HPRD:11111	VPS8	KIAA0804	vacuolar protein sorting 8 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_34822	chr15	81989542	81989731	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-323218	NM_001080532	342125	Hs.253489	NM_001080532		TMC3	-	transmembrane channel-like 3	protein-coding
19-PTNLD28-TUMOR_peak_88535	chr6	83572258	83572478	+	5.60910	NA	Intergenic	ERVL-E-int|LTR|ERVL	203177	NM_198920	90025	Hs.148609	NM_198920	HPRD:12861	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
19-PTNLD28-TUMOR_peak_76478	chr4	106113123	106113225	+	5.60910	NA	intron (NM_017628, intron 2 of 2)	intron (NM_017628, intron 2 of 2)	45332	NM_001127208	54790	Hs.367639	NM_017628	HPRD:07876	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_33494	chr15	48394532	48394653	+	5.60910	NA	Intergenic	L1ME4a|LINE|L1	-18577	NM_205850	283652	Hs.710240	NM_205850	HPRD:18055	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_100152	chr8	115055006	115055171	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-605846	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_56084	chr2	141102522	141102633	+	5.60910	NA	intron (NM_018557, intron 77 of 90)	intron (NM_018557, intron 77 of 90)	1447683	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_31669	chr14	91164008	91164179	+	5.60910	NA	intron (NM_001010854, intron 5 of 19)	intron (NM_001010854, intron 5 of 19)	55120	NR_110134	101928909	Hs.662545	NR_110134	ENSG00000259163	LOC101928909	-	uncharacterized LOC101928909	ncRNA
19-PTNLD28-TUMOR_peak_59851	chr20	12787110	12787279	+	5.60910	NA	Intergenic	L1HS|LINE|L1	130417	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
19-PTNLD28-TUMOR_peak_91758	chr7	28232377	28232490	+	5.60910	NA	intron (NR_034097, intron 2 of 3)	intron (NR_034097, intron 2 of 3)	-11996	NM_175061	221895	Hs.368944	NM_175061	HPRD:09373	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_76502	chr4	107041152	107041240	+	5.60910	NA	intron (NM_001163435, intron 23 of 25)	L1PA2|LINE|L1	-195571	NM_001142415	9255	Hs.591680	NM_004757	HPRD:04676	AIMP1	EMAP2|EMAPII|HLD3|SCYE1|p43	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	protein-coding
19-PTNLD28-TUMOR_peak_57256	chr2	180839610	180839760	+	5.60910	NA	intron (NM_020943, intron 6 of 19)	AluJb|SINE|Alu	32095	NM_020943	57703	Hs.311363	NM_020943	HPRD:17220	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_56162	chr2	146569823	146570002	+	5.60910	NA	Intergenic	Intergenic	-774713	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_18409	chr11	46550873	46551015	+	5.60910	NA	intron (NM_001267782, intron 8 of 19)	intron (NM_001267782, intron 8 of 19)	61970	NM_017749	55626	Hs.654644	NM_017749	HPRD:10975	AMBRA1	DCAF3|WDR94	autophagy/beclin-1 regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_33099	chr15	38891104	38891194	+	5.60910	NA	Intergenic	Intergenic	-34142	NM_001128602	10125	Hs.591127	NM_005739	HPRD:04909	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	protein-coding
19-PTNLD28-TUMOR_peak_69119	chr3	75328032	75328120	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	64449	NR_039646	100616394		NR_039646	miRBase:MI0016787	MIR4444-1	MIR4444|hsa-mir-4444-1	microRNA 4444-1	ncRNA
19-PTNLD28-TUMOR_peak_18194	chr11	43398239	43398414	+	5.60910	NA	intron (NM_018259, intron 1 of 23)	intron (NM_018259, intron 1 of 23)	17891	NM_018259	55761	Hs.191186	NM_018259	HPRD:15582	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
19-PTNLD28-TUMOR_peak_14992	chr10	96204181	96204281	+	5.60910	NA	intron (NM_015188, intron 2 of 12)	intron (NM_015188, intron 2 of 12)	42045	NM_015188	23232	Hs.500598	NM_015188	ENSG00000108239	TBC1D12	-	TBC1 domain family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_42043	chr17	46385321	46385409	+	5.60910	NA	intron (NM_003726, intron 4 of 12)	intron (NM_003726, intron 4 of 12)	122229	NM_001075099	8631	Hs.316931	NM_003726	HPRD:05396	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
19-PTNLD28-TUMOR_peak_33505	chr15	48843309	48843554	+	5.60910	NA	intron (NM_000138, intron 6 of 65)	MIR|SINE|MIR	94554	NM_000138	2200	Hs.591133	NM_000138	HPRD:00618	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
19-PTNLD28-TUMOR_peak_65045	chr22	30440490	30440635	+	5.60910	NA	intron (NR_110541, intron 2 of 4)	intron (NR_110541, intron 2 of 4)	-35891	NM_152510	150280	Hs.120391	NM_152510	HPRD:13668	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_62972	chr21	27162513	27162927	+	5.60910	NA	Intergenic	Intergenic	-54755	NM_001685	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_48773	chr19	36681516	36681633	+	5.60910	NA	intron (NM_001042474, intron 4 of 4)	MLT1D|LTR|ERVL-MaLR	-23930	NM_001099639	7705	Hs.643436	NM_007145	HPRD:03296	ZNF146	OZF	zinc finger protein 146	protein-coding
19-PTNLD28-TUMOR_peak_83050	chr5	147585609	147585705	+	5.60910	NA	intron (NM_205841, intron 2 of 3)	intron (NM_205841, intron 2 of 3)	3300	NM_205841	404203	Hs.334274	NM_205841	HPRD:15439	SPINK6	BUSI2|UNQ844	serine peptidase inhibitor, Kazal type 6	protein-coding
19-PTNLD28-TUMOR_peak_94743	chr7	106392884	106392979	+	5.60910	NA	Intergenic	Intergenic	-91297	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_56108	chr2	143459606	143459697	+	5.60910	NA	Intergenic	SVA_D|Other|Other	-175544	NM_003937	8942	Hs.470126	NM_003937	HPRD:08940	KYNU	-	kynureninase	protein-coding
19-PTNLD28-TUMOR_peak_15530	chr10	107712023	107712181	+	5.60910	NA	Intergenic	MER57C1|LTR|ERV1	-132011	NR_120625	101927549	Hs.556885	NR_120625	ENSG00000229466	LOC101927549	-	uncharacterized LOC101927549	ncRNA
19-PTNLD28-TUMOR_peak_88798	chr6	92454375	92454589	+	5.60910	NA	Intergenic	Intergenic	-54336	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_7614	chr1	160635741	160635844	+	5.60910	NA	Intergenic	L2c|LINE|L2	-18691	NM_003037	6504	Hs.523660	NM_003037	HPRD:04603	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
19-PTNLD28-TUMOR_peak_71032	chr3	135041983	135042158	+	5.60910	NA	Intergenic	Intergenic	527971	NM_004441	2047	Hs.116092	NM_004441	HPRD:02790	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
19-PTNLD28-TUMOR_peak_5504	chr1	111217125	111217628	+	5.60910	NA	exon (NM_002232, exon 1 of 1)	exon (NM_002232, exon 1 of 1)	279	NM_002232	3738	Hs.169948	NM_002232	HPRD:15937	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_14659	chr10	85631389	85631547	+	5.60910	NA	Intergenic	Intergenic	-267717	NM_014394	27069	Hs.352656	NM_014394	HPRD:17038	GHITM	DERP2|HSPC282|MICS1|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
19-PTNLD28-TUMOR_peak_98783	chr8	54819445	54819576	+	5.60910	NA	intron (NR_104579, intron 1 of 3)	intron (NR_104579, intron 1 of 3)	26078	NR_104579	8601	Hs.368733	NM_003702	HPRD:06225	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G-protein signaling 20	protein-coding
19-PTNLD28-TUMOR_peak_53532	chr2	74237464	74237552	+	5.60910	NA	intron (NM_001287491, intron 2 of 10)	intron (NM_001287491, intron 2 of 10)	23977	NM_001287491	200424	Hs.516107	NM_144993	ENSG00000187605	TET3	-	tet methylcytosine dioxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_89238	chr6	117198160	117198412	+	5.60910	NA	promoter-TSS (NM_173560)	promoter-TSS (NM_173560)	-90	NM_173560	222546	Hs.352276	NM_173560	HPRD:11490	RFX6	MTCHRS|MTFS|RFXDC1|dJ955L16.1	regulatory factor X, 6	protein-coding
19-PTNLD28-TUMOR_peak_69338	chr3	95118496	95118765	+	5.60910	NA	Intergenic	Intergenic	283407	NR_077228	100287639	Hs.591320	NR_077228	ENSG00000244681	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_55915	chr2	135594756	135594844	+	5.60910	NA	Intergenic	MIR|SINE|MIR	-1386	NM_138326	130013	Hs.655728	NM_138326	HPRD:12326	ACMSD	-	aminocarboxymuconate semialdehyde decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_35302	chr15	93252455	93252651	+	5.60910	NA	Intergenic	Intergenic	-53522	NM_207446	400451	Hs.27373	NM_207446	HPRD:14220	FAM174B	-	family with sequence similarity 174, member B	protein-coding
19-PTNLD28-TUMOR_peak_58649	chr2	225734446	225734534	+	5.60910	NA	intron (NM_001290263, intron 11 of 55)	intron (NM_001290263, intron 11 of 55)	77292	NM_001290263	55619	Hs.46578	NM_014689	HPRD:10919	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
19-PTNLD28-TUMOR_peak_41358	chr17	38324536	38324860	+	5.60910	NA	intron (NM_007359, intron 11 of 13)	intron (NM_007359, intron 11 of 13)	6512	NR_106926	102466986		NR_106926		MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
19-PTNLD28-TUMOR_peak_12974	chr10	36782470	36782597	+	5.60910	NA	Intergenic	Intergenic	-632252	NM_052997	91074	Hs.373787	NM_052997	HPRD:10125	ANKRD30A	NY-BR-1	ankyrin repeat domain 30A	protein-coding
19-PTNLD28-TUMOR_peak_83803	chr5	169057055	169057143	+	5.60910	NA	Intergenic	Intergenic	-7152	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_31602	chr14	89493564	89493652	+	5.60910	NA	Intergenic	CpG	203111	NM_001288782	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
19-PTNLD28-TUMOR_peak_68747	chr3	63931359	63931463	+	5.60910	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	-22009	NM_001128149	6314	Hs.476595	NM_000333	HPRD:06365	ATXN7	ADCAII|OPCA3|SCA7	ataxin 7	protein-coding
19-PTNLD28-TUMOR_peak_1654	chr1	26453217	26453333	+	5.60910	NA	Intergenic	Intergenic	15007	NM_152835	149420	Hs.468801	NM_152835	HPRD:15110	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
19-PTNLD28-TUMOR_peak_75035	chr4	40327528	40327616	+	5.60910	NA	intron (NR_121640, intron 1 of 2)	intron (NR_121640, intron 1 of 2)	9070	NR_121640	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_92616	chr7	55028343	55028564	+	5.60910	NA	Intergenic	Intergenic	-58272	NM_201282	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_109368	chrX	123109170	123109417	+	5.60910	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	13737	NM_006603	10735	Hs.496710	NM_006603	HPRD:05077	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_91970	chr7	34245149	34245366	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	300734	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_107797	chrX	22595464	22595552	+	5.60910	NA	intron (NR_073010, intron 4 of 5)	intron (NR_073010, intron 4 of 5)	304478	NM_152577	158506	Hs.132485	NM_152577	HPRD:06545	ZNF645	CT138|HAKAIL	zinc finger protein 645	protein-coding
19-PTNLD28-TUMOR_peak_42811	chr17	61427029	61427302	+	5.60910	NA	intron (NM_025185, intron 10 of 24)	intron (NM_025185, intron 10 of 24)	91042	NM_001017917	1534	Hs.355264	NM_001915	HPRD:02485	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding
19-PTNLD28-TUMOR_peak_110319	chrY	27027735	27027873	+	5.60910	NA	intron (NM_020420, intron 13 of 16).3	L1PA2|LINE|L1	47814	NM_001005785	57055	Hs.592257	NM_020363	HPRD:11848	DAZ2	pDP1678	deleted in azoospermia 2	protein-coding
19-PTNLD28-TUMOR_peak_36117	chr16	8567235	8567554	+	5.60910	NA	Intergenic	Intergenic	20434	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
19-PTNLD28-TUMOR_peak_84774	chr6	2195047	2195170	+	5.60910	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	-18883	NM_001253846	2762	Hs.144496	NM_001500	HPRD:11925	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_14641	chr10	82531868	82531976	+	5.60910	NA	Intergenic	MIRc|SINE|MIR	231347	NM_001145719	387694	Hs.147643	NM_207372	HPRD:18050	SH2D4B	-	SH2 domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_14306	chr10	74572599	74572703	+	5.60910	NA	intron (NR_073062, intron 3 of 9)	intron (NR_073062, intron 3 of 9)	-80688	NM_152635	170392	Hs.8366	NM_152635	HPRD:17660	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
19-PTNLD28-TUMOR_peak_80848	chr5	77702328	77702435	+	5.60910	NA	intron (NR_110885, intron 2 of 7)	L3|LINE|CR1	-46016	NR_105014	728769	Hs.586193	NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31834	chr14	94786733	94786869	+	5.60910	NA	intron (NM_001756, intron 1 of 4)	MER57C1|LTR|ERV1	2887	NM_001756	866	Hs.532635	NM_001756	HPRD:00419	SERPINA6	CBG	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6	protein-coding
19-PTNLD28-TUMOR_peak_71561	chr3	148508793	148509043	+	5.60910	NA	Intergenic	Intergenic	-36670	NM_001871	1360	Hs.477891	NM_001871	HPRD:00271	CPB1	CPB|PASP|PCPB	carboxypeptidase B1 (tissue)	protein-coding
19-PTNLD28-TUMOR_peak_84172	chr5	174771394	174771554	+	5.60910	NA	Intergenic	MER77|LTR|ERVL	99689	NM_000794	1812	Hs.2624	NM_000794	HPRD:00538	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding
19-PTNLD28-TUMOR_peak_28201	chr13	49343382	49343518	+	5.60910	NA	Intergenic	Intergenic	62499	NM_020377	57105	Hs.253706	NM_020377	HPRD:09293	CYSLTR2	CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_71362	chr3	141429850	141429938	+	5.60910	NA	Intergenic	Intergenic	-27157	NM_014245	9616	Hs.134623	NM_014245		RNF7	CKBBP1|ROC2|SAG	ring finger protein 7	protein-coding
19-PTNLD28-TUMOR_peak_58584	chr2	223536459	223536669	+	5.60910	NA	exon (NM_058165, exon 1 of 6)	exon (NM_058165, exon 1 of 6)	107	NM_058165	116255	Hs.344090	NM_058165	HPRD:14729	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_99182	chr8	72930921	72931009	+	5.60910	NA	intron (NR_033652, intron 4 of 4)	intron (NR_033652, intron 4 of 4)	44837	NR_046948	100873782		NR_046948	ENSG00000207298	RNU6-83P	RNU6-83	RNA, U6 small nuclear 83, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_32094	chr14	101701709	101701805	+	5.60910	NA	Intergenic	Intergenic	165509	NR_047664	100507257	Hs.301755	NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_85541	chr6	14165391	14165529	+	5.60910	NA	Intergenic	Intergenic	47595	NM_004233	9308	Hs.595133	NM_004233	HPRD:05170	CD83	BL11|HB15	CD83 molecule	protein-coding
19-PTNLD28-TUMOR_peak_71393	chr3	141978305	141978401	+	5.60910	NA	Intergenic	MER51B|LTR|ERV1	-33904	NM_001039547	256356	Hs.135904	NM_152776	HPRD:14612	GK5	-	glycerol kinase 5 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_86363	chr6	28928904	28929005	+	5.60910	NA	Intergenic	L1PB1|LINE|L1	17393	NR_103538	729583	Hs.453549	NR_103538		C6orf100	dJ25J6.5	chromosome 6 open reading frame 100	ncRNA
19-PTNLD28-TUMOR_peak_29306	chr14	20703982	20704070	+	5.60910	NA	Intergenic	L1PA4|LINE|L1	-6925	NM_001004479	390442	Hs.553767	NM_001004479	HPRD:14902	OR11H4	OR14-36	olfactory receptor, family 11, subfamily H, member 4	protein-coding
19-PTNLD28-TUMOR_peak_84524	chr5	179660119	179660336	+	5.60910	NA	TTS (NM_139070)	TTS (NM_139070)	-24097	NM_175062	255426	Hs.190559	NM_175062	HPRD:15212	RASGEF1C	-	RasGEF domain family, member 1C	protein-coding
19-PTNLD28-TUMOR_peak_10083	chr1	218661134	218661247	+	5.60910	NA	Intergenic	Intergenic	45222	NR_125715	103611157	Hs.133379	NR_125715		TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_45367	chr18	39938400	39938499	+	5.60910	NA	intron (NR_046456, intron 5 of 7)	intron (NR_046456, intron 5 of 7)	171816	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_20797	chr11	100447329	100447417	+	5.60910	NA	Intergenic	Intergenic	-111034	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_45062	chr18	27082008	27082224	+	5.60910	NA	Intergenic	Intergenic	-796760	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	ncRNA
19-PTNLD28-TUMOR_peak_38831	chr16	77822401	77822489	+	5.60910	NA	promoter-TSS (NM_020927)	promoter-TSS (NM_020927)	-38	NM_020927	57687	Hs.461405	NM_020927	HPRD:13875	VAT1L	-	vesicle amine transport 1-like	protein-coding
19-PTNLD28-TUMOR_peak_21820	chr11	123474255	123474382	+	5.60910	NA	intron (NM_001286563, intron 9 of 20)	L2|LINE|L2	43348	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_82964	chr5	145429063	145429229	+	5.60910	NA	intron (NM_152550, intron 7 of 9)	intron (NM_152550, intron 7 of 9)	54800	NM_001029869	153770	Hs.162369	NM_001029869	HPRD:18737	PLAC8L1	-	PLAC8-like 1	protein-coding
19-PTNLD28-TUMOR_peak_108842	chrX	80600863	80600951	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-143466	NM_030763	79366	Hs.282204	NM_030763	HPRD:02310	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
19-PTNLD28-TUMOR_peak_27661	chr13	30613128	30613243	+	5.60910	NA	Intergenic	Intergenic	102517	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_75979	chr4	82803093	82803227	+	5.60910	NA	Intergenic	Intergenic	-410078	NM_001300736	153020	Hs.591696	NM_152545	HPRD:17955	RASGEF1B	GPIG4	RasGEF domain family, member 1B	protein-coding
19-PTNLD28-TUMOR_peak_108541	chrX	63357168	63357257	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	68412	NM_152424	139285	Hs.314225	NM_152424	HPRD:06565	AMER1	FAM123B|OSCS|WTX	APC membrane recruitment protein 1	protein-coding
19-PTNLD28-TUMOR_peak_73219	chr3	190784558	190784687	+	5.60910	NA	Intergenic	Intergenic	-145700	NM_198184	344901	Hs.526794	NM_198184	HPRD:17809	OSTN	MUSCLIN	osteocrin	protein-coding
19-PTNLD28-TUMOR_peak_71387	chr3	141836142	141836284	+	5.60910	NA	intron (NM_001178139, intron 1 of 12)	L1MC4|LINE|L1	32173	NM_001178139	7029	Hs.379018	NM_006286	HPRD:03696	TFDP2	DP2	transcription factor Dp-2 (E2F dimerization partner 2)	protein-coding
19-PTNLD28-TUMOR_peak_56155	chr2	145708857	145708984	+	5.60910	NA	intron (NR_033870, intron 3 of 4)	intron (NR_033870, intron 3 of 4)	283386	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_69644	chr3	108321600	108321715	+	5.60910	NA	intron (NM_014648, intron 1 of 32)	intron (NM_014648, intron 1 of 32)	-13166	NM_020890	57650	Hs.591308	NM_020890	HPRD:11151	KIAA1524	CIP2A|p90	KIAA1524	protein-coding
19-PTNLD28-TUMOR_peak_107732	chrX	19881452	19881581	+	5.60910	NA	intron (NM_031892, intron 1 of 17)	LTR82B|LTR|ERVL	24228	NM_031892	30011	Hs.726365	NM_031892	HPRD:02301	SH3KBP1	CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18	SH3-domain kinase binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_100519	chr8	124328040	124328144	+	5.60910	NA	Intergenic	SVA_D|Other|Other	-40311	NR_037873	11244	Hs.521800	NM_007222	HPRD:10379	ZHX1	-	zinc fingers and homeoboxes 1	protein-coding
19-PTNLD28-TUMOR_peak_106339	chr9	131972019	131972115	+	5.60910	NA	Intergenic	L1MB3|LINE|L1	-31527	NM_203434	389792	Hs.529857	NM_203434	HPRD:17128	IER5L	bA247A12.2	immediate early response 5-like	protein-coding
19-PTNLD28-TUMOR_peak_80985	chr5	81608271	81608400	+	5.60910	NA	intron (NM_001017971, intron 8 of 9)	intron (NM_001017971, intron 8 of 9)	33054	NM_001017971	92270	Hs.729805	NM_001017971	HPRD:18710	ATP6AP1L	-	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_92849	chr7	64244538	64244770	+	5.60910	NA	Intergenic	SVA_D|Other|Other	-10112	NR_073389	7697	Hs.184080	NM_006524	HPRD:07244	ZNF138	pHZ-32	zinc finger protein 138	protein-coding
19-PTNLD28-TUMOR_peak_97472	chr8	20367547	20367649	+	5.60910	NA	Intergenic	Intergenic	234314	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81900	chr5	125338286	125338393	+	5.60910	NA	Intergenic	Intergenic	-176931	NR_105042	102546228	Hs.582529	NR_105042		LOC102546228	-	uncharacterized LOC102546228	ncRNA
19-PTNLD28-TUMOR_peak_77177	chr4	140164606	140164821	+	5.60910	NA	Intergenic	Intergenic	36779	NM_032623	84709	Hs.710036	NM_032623	HPRD:17805	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria-localized glutamic acid-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_106679	chr9	138261311	138261451	+	5.60910	NA	Intergenic	Intergenic	26286	NM_173520	157927	Hs.559511	NM_173520	ENSG00000178243	C9orf62	-	chromosome 9 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_39682	chr17	2165525	2165733	+	5.60910	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	3864	NM_001256827	23293	Hs.448342	NM_017575	HPRD:06502	SMG6	C17orf31|EST1A|SMG-6|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
19-PTNLD28-TUMOR_peak_78809	chr5	9069937	9070157	+	5.60910	NA	intron (NM_003966, intron 16 of 22)	intron (NM_003966, intron 16 of 22)	-16040	NR_039779	100616326		NR_039779		MIR4636	-	microRNA 4636	ncRNA
19-PTNLD28-TUMOR_peak_38904	chr16	80011799	80011907	+	5.60910	NA	Intergenic	Intergenic	182707	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_97151	chr8	11269125	11269213	+	5.60910	NA	intron (NR_026814, intron 3 of 6)	intron (NR_026814, intron 3 of 6)	43258	NR_026814	83656	Hs.583896	NM_054017	ENSG00000184608	C8orf12	-	chromosome 8 open reading frame 12	ncRNA
19-PTNLD28-TUMOR_peak_97184	chr8	11771129	11771294	+	5.60910	NA	Intergenic	Intergenic	-45565	NM_147782	1508	Hs.520898	NM_001908	HPRD:00287	CTSB	APPS|CPSB	cathepsin B	protein-coding
19-PTNLD28-TUMOR_peak_82986	chr5	146124087	146124203	+	5.60910	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	134203	NM_001271948	5521	Hs.627618	NM_181674	HPRD:05059	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
19-PTNLD28-TUMOR_peak_102152	chr9	8366664	8366826	+	5.60910	NA	intron (NM_001040712, intron 23 of 29)	intron (NM_001040712, intron 23 of 29)	367201	NM_130393	5789	Hs.446083	NM_002839	HPRD:03358	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type, D	protein-coding
19-PTNLD28-TUMOR_peak_89148	chr6	112525280	112525374	+	5.60910	NA	intron (NM_001105206, intron 4 of 38)	intron (NM_001105206, intron 4 of 38)	-32470	NR_121193	101927640	Hs.510007	NR_121193		LOC101927640	-	uncharacterized LOC101927640	ncRNA
19-PTNLD28-TUMOR_peak_93638	chr7	80146559	80146758	+	5.60910	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-5416	NM_001102386	346562	Hs.335049	NM_001102386	ENSG00000214415	GNAT3	GDCA	guanine nucleotide binding protein, alpha transducing 3	protein-coding
19-PTNLD28-TUMOR_peak_51533	chr2	23545822	23545987	+	5.60910	NA	Intergenic	Intergenic	-62394	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_17775	chr11	29350689	29350810	+	5.60910	NA	Intergenic	Intergenic	687828	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_89285	chr6	119805817	119805991	+	5.60910	NA	intron (NR_046100, intron 1 of 5)	intron (NR_046100, intron 1 of 5)	6563	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
19-PTNLD28-TUMOR_peak_77351	chr4	142735861	142735977	+	5.60910	NA	Intergenic	Intergenic	178170	NM_000585	3600	Hs.168132	NM_000585	HPRD:02776	IL15	IL-15	interleukin 15	protein-coding
19-PTNLD28-TUMOR_peak_59930	chr20	15982070	15982161	+	5.60910	NA	intron (NM_080676, intron 15 of 16)	intron (NM_080676, intron 15 of 16)	571964	NM_024704	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_52309	chr2	40953257	40953348	+	5.60910	NA	Intergenic	Intergenic	-213727	NM_001112802	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_26617	chr12	120449998	120450086	+	5.60910	NA	intron (NM_207311, intron 2 of 8)	intron (NM_207311, intron 2 of 8)	22394	NM_207311	92558	Hs.369763	NM_207311	HPRD:14292	CCDC64	BICDR-1|H_267D11.1	coiled-coil domain containing 64	protein-coding
19-PTNLD28-TUMOR_peak_80836	chr5	77112680	77112793	+	5.60910	NA	Intergenic	LTR67B|LTR|ERVL	-40551	NM_004607	6902	Hs.291212	NM_004607	HPRD:18166	TBCA	-	tubulin folding cofactor A	protein-coding
19-PTNLD28-TUMOR_peak_92115	chr7	39894766	39894864	+	5.60910	NA	Intergenic	Intergenic	-95144	NM_031267	8621	Hs.233552	NM_003718	HPRD:04496	CDK13	CDC2L|CDC2L5|CHED|hCDK13	cyclin-dependent kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_75340	chr4	54796286	54796374	+	5.60910	NA	Intergenic	Intergenic	57119	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
19-PTNLD28-TUMOR_peak_63482	chr21	39084613	39084757	+	5.60910	NA	intron (NM_002240, intron 3 of 3)	intron (NM_002240, intron 3 of 3)	204056	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_88745	chr6	90680445	90680561	+	5.60910	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	76315	NM_032602	84694	Hs.334499	NM_032602	HPRD:13104	GJA10	CX62	gap junction protein, alpha 10, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_109400	chrX	128062755	128062843	+	5.60910	NA	Intergenic	L2c|LINE|L2	594683	NM_001282874	6594	Hs.152292	NM_003069	HPRD:02055	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
19-PTNLD28-TUMOR_peak_20264	chr11	78394562	78394751	+	5.60910	NA	intron (NM_001098816, intron 29 of 33)	L1HS|LINE|L1	-108747	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_108355	chrX	52167919	52168008	+	5.60910	NA	Intergenic	Intergenic	55810	NM_130777	9502	Hs.409726	NM_130777	HPRD:02332	XAGE2	CT12.2|GAGED3|XAGE-2	X antigen family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_74866	chr4	26743105	26743193	+	5.60910	NA	intron (NM_018317, intron 17 of 20)	intron (NM_018317, intron 17 of 20)	-119164	NM_001169117	57620	Hs.744950	NM_020860	HPRD:11609	STIM2	-	stromal interaction molecule 2	protein-coding
19-PTNLD28-TUMOR_peak_64866	chr22	26794750	26794861	+	5.60910	NA	Intergenic	Intergenic	-30475	NM_020437	57168	Hs.567547	NM_020437	HPRD:14255	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25538	chr12	89847499	89847618	+	5.60910	NA	intron (NR_037660, intron 8 of 9)	intron (NR_037660, intron 8 of 9)	71025	NM_003774	8693	Hs.25130	NM_003774	HPRD:09152	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_56072	chr2	140548530	140548625	+	5.60910	NA	Intergenic	Intergenic	893683	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_22448	chr12	1820925	1821013	+	5.60910	NA	intron (NM_024551, intron 1 of 7)	HERV9-int|LTR|ERV1	20722	NM_024551	79602	Hs.371642	NM_024551	HPRD:06403	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_57034	chr2	174739732	174739827	+	5.60910	NA	Intergenic	Intergenic	89168	NM_001017371	6670	Hs.531587	NM_003111	HPRD:03483	SP3	SPR2	Sp3 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_28346	chr13	53558186	53558274	+	5.60910	NA	Intergenic	L2a|LINE|L2	-44646	NM_006418	10562	Hs.508113	NM_006418	HPRD:06580	OLFM4	GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD	olfactomedin 4	protein-coding
19-PTNLD28-TUMOR_peak_13202	chr10	43738293	43738585	+	5.60910	NA	intron (NM_145313, intron 1 of 12)	SVA_A|Other|Other	-13252	NM_001282862	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_83531	chr5	158122744	158122839	+	5.60910	NA	TTS (NM_024007)	TTS (NM_024007)	-286010	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_27090	chr12	126978014	126978148	+	5.60910	NA	Intergenic	L2b|LINE|L2	51054	NR_015398	100128554	Hs.408255	NR_015398	ENSG00000214043	LOC100128554	-	uncharacterized LOC100128554	ncRNA
19-PTNLD28-TUMOR_peak_99505	chr8	93848176	93848357	+	5.60910	NA	Intergenic	Intergenic	-49978	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
19-PTNLD28-TUMOR_peak_70963	chr3	133943416	133943671	+	5.60910	NA	intron (NM_001005861, intron 1 of 14)	LTR13|LTR|ERVK	26043	NM_002958	6259	Hs.654562	NM_002958	HPRD:02751	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_13528	chr10	50166840	50166928	+	5.60910	NA	intron (NM_020945, intron 52 of 61)	L2a|LINE|L2	26748	NR_036182	100422895		NR_036182	miRBase:MI0015827	MIR4294	-	microRNA 4294	ncRNA
19-PTNLD28-TUMOR_peak_32696	chr15	27905990	27906096	+	5.60910	NA	Intergenic	Intergenic	438415	NM_001300984	4948	Hs.654411	NM_000275	HPRD:01945	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	oculocutaneous albinism II	protein-coding
19-PTNLD28-TUMOR_peak_9052	chr1	197326159	197326247	+	5.60910	NA	intron (NM_001257966, intron 5 of 9)	intron (NM_001257966, intron 5 of 9)	88869	NR_047564	23418	Hs.126135	NM_012076	HPRD:05019	CRB1	LCA8|RP12	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding
19-PTNLD28-TUMOR_peak_34701	chr15	78533410	78533508	+	5.60910	NA	Intergenic	Intergenic	-6410	NM_001199377	23205	Hs.655760	NM_015162		ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
19-PTNLD28-TUMOR_peak_68882	chr3	68056843	68057129	+	5.60910	NA	intron (NM_213609, intron 2 of 4)	CpG	3627	NM_213609	407738	Hs.655061	NM_213609	HPRD:13294	FAM19A1	TAFA-1|TAFA1	family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	protein-coding
19-PTNLD28-TUMOR_peak_94161	chr7	98345047	98345176	+	5.60910	NA	Intergenic	L1PA4|LINE|L1	98514	NM_002523	4885	Hs.3281	NM_002523	HPRD:02853	NPTX2	NARP|NP-II|NP2	neuronal pentraxin II	protein-coding
19-PTNLD28-TUMOR_peak_13446	chr10	48398537	48398638	+	5.60910	NA	Intergenic	Intergenic	-7596	NM_002900	5949	Hs.591928	NM_002900	HPRD:01581	RBP3	D10S64|D10S65|D10S66|IRBP|RBPI|RP66	retinol binding protein 3, interstitial	protein-coding
19-PTNLD28-TUMOR_peak_38456	chr16	69027887	69028004	+	5.60910	NA	intron (NM_024562, intron 15 of 17)	intron (NM_024562, intron 15 of 17)	-111522	NM_001199280	3038	Hs.592069	NM_005329	HPRD:03889	HAS3	-	hyaluronan synthase 3	protein-coding
19-PTNLD28-TUMOR_peak_75558	chr4	67901383	67901510	+	5.60910	NA	Intergenic	MER54A|LTR|ERVL	386272	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_38372	chr16	67815181	67815283	+	5.60910	NA	intron (NM_020850, intron 2 of 13)	intron (NM_020850, intron 2 of 13)	25323	NM_020850	57610	Hs.368569	NM_020850	HPRD:15207	RANBP10	-	RAN binding protein 10	protein-coding
19-PTNLD28-TUMOR_peak_10963	chr1	234290573	234290687	+	5.60910	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-59327	NM_001300845	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_8275	chr1	173501526	173501615	+	5.60910	NA	intron (NM_178527, intron 17 of 27)	intron (NM_178527, intron 17 of 27)	55084	NM_004905	9588	Hs.120	NM_004905	HPRD:03817	PRDX6	1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29	peroxiredoxin 6	protein-coding
19-PTNLD28-TUMOR_peak_24965	chr12	64430366	64430487	+	5.60910	NA	intron (NM_020762, intron 4 of 21)	intron (NM_020762, intron 4 of 21)	185650	NM_001300940	144577	Hs.444671	NM_152440	HPRD:08727	C12orf66	-	chromosome 12 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_67547	chr3	37903699	37903986	+	5.60910	NA	promoter-TSS (NR_110531)	promoter-TSS (NR_110531)	173	NM_005808	10217	Hs.475963	NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding
19-PTNLD28-TUMOR_peak_108058	chrX	42693010	42693284	+	5.60910	NA	Intergenic	LTR10C|LTR|ERV1	-55661	NR_002191	80316	Hs.127689	NM_025210		PPP1R2P9	I-4	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_8182	chr1	171837447	171837603	+	5.60910	NA	intron (NM_001136127, intron 1 of 19)	intron (NM_001136127, intron 1 of 19)	26907	NM_001136127	26052	Hs.654775	NM_015569	HPRD:13241	DNM3	Dyna III	dynamin 3	protein-coding
19-PTNLD28-TUMOR_peak_89286	chr6	119815174	119815262	+	5.60910	NA	Intergenic	Intergenic	-2751	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
19-PTNLD28-TUMOR_peak_104520	chr9	93222651	93222798	+	5.60910	NA	Intergenic	Intergenic	-26953	NR_109795	101927873	Hs.598482	NR_109795		LINC01508	-	long intergenic non-protein coding RNA 1508	ncRNA
19-PTNLD28-TUMOR_peak_106046	chr9	127379910	127380019	+	5.60910	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-40751	NR_038975	100379345	Hs.660412	NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_8935	chr1	187318406	187318494	+	5.60910	NA	Intergenic	L1HS|LINE|L1	520418	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_57979	chr2	205925111	205925308	+	5.60910	NA	intron (NM_205863, intron 4 of 21)	intron (NM_205863, intron 4 of 21)	514693	NM_057177	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_30830	chr14	65604450	65604570	+	5.60910	NA	Intergenic	Intergenic	-35097	NR_073137	4149	Hs.285354	NM_002382	HPRD:01113	MAX	bHLHd4	MYC associated factor X	protein-coding
19-PTNLD28-TUMOR_peak_90962	chr7	2926773	2926861	+	5.60910	NA	Intergenic	Intergenic	-42858	NM_001293092	2768	Hs.487341	NM_007353	HPRD:05093	GNA12	NNX3|RMP|gep	guanine nucleotide binding protein (G protein) alpha 12	protein-coding
19-PTNLD28-TUMOR_peak_97713	chr8	23810057	23810174	+	5.60910	NA	Intergenic	Intergenic	-97795	NM_003155	6781	Hs.25590	NM_003155	HPRD:03115	STC1	STC	stanniocalcin 1	protein-coding
19-PTNLD28-TUMOR_peak_75918	chr4	81019079	81019173	+	5.60910	NA	Intergenic	Intergenic	-24500	NM_001286780	118429	Hs.162963	NM_058172	HPRD:07452	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	anthrax toxin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_104621	chr9	95716415	95716546	+	5.60910	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	6879	NM_001083536	89846	Hs.411081	NM_033086	HPRD:10957	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_25225	chr12	70247467	70247690	+	5.60910	NA	Intergenic	SVA_B|Other|Other	74846	NM_001024647	117177	Hs.258209	NM_022456	HPRD:10565	RAB3IP	RABIN3	RAB3A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_33732	chr15	58670698	58670786	+	5.60910	NA	Intergenic	Tigger3d|DNA|TcMar-Tigger	-53433	NM_000236	3990	Hs.654472	NM_000236	HPRD:01058	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase, hepatic	protein-coding
19-PTNLD28-TUMOR_peak_29893	chr14	35625329	35625495	+	5.60910	NA	intron (NM_001256680, intron 3 of 6)	intron (NM_001256680, intron 3 of 6)	33654	NM_001256681	9692	Hs.458487	NM_014672	HPRD:18711	KIAA0391	MRPP3|PRORP	KIAA0391	protein-coding
19-PTNLD28-TUMOR_peak_86768	chr6	32853669	32853781	+	5.60910	NA	Intergenic	Intergenic	-8228	NR_037178	100294145	Hs.559456	NR_037177		LOC100294145	-	uncharacterized LOC100294145	ncRNA
19-PTNLD28-TUMOR_peak_108116	chrX	46062675	46062906	+	5.60910	NA	Intergenic	Intergenic	124319	NR_110388	101927574	Hs.350952	NR_110388		LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
19-PTNLD28-TUMOR_peak_31629	chr14	90393198	90393314	+	5.60910	NA	intron (NM_001284268, intron 5 of 5)	L1M7|LINE|L1	27645	NM_001284269	90141	Hs.123232	NM_145231	HPRD:16609	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
19-PTNLD28-TUMOR_peak_104258	chr9	87863837	87863978	+	5.60910	NA	Intergenic	Intergenic	493037	NM_001286715	23287	Hs.719980	NM_015239	HPRD:08442	AGTPBP1	CCP1|NNA1	ATP/GTP binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108216	chrX	48081246	48081384	+	5.60910	NA	Intergenic	SVA_D|Other|Other	-25116	NM_021015	6758	Hs.166198	NM_021015	HPRD:02267	SSX5	-	synovial sarcoma, X breakpoint 5	protein-coding
19-PTNLD28-TUMOR_peak_66994	chr3	17398947	17399114	+	5.60910	NA	intron (NM_001134381, intron 14 of 23)	intron (NM_001134381, intron 14 of 23)	342482	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_52863	chr2	55877758	55877992	+	5.60910	NA	intron (NM_033109, intron 18 of 27)	SVA_D|Other|Other	-33015	NM_020463	57223	Hs.516182	NM_020463	HPRD:13854	SMEK2	FLFL2|PP4R3B|PSY2|smk1	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding
19-PTNLD28-TUMOR_peak_91765	chr7	28576036	28576133	+	5.60910	NA	intron (NM_182898, intron 4 of 10)	intron (NM_182898, intron 4 of 10)	100850	NM_004904	9586	Hs.437075	NM_004904	HPRD:09896	CREB5	CRE-BPA	cAMP responsive element binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_39784	chr17	4151394	4151554	+	5.60910	NA	intron (NR_047571, intron 1 of 23)	MER1B|DNA|hAT-Charlie	15668	NM_001257999	51479	Hs.696087	NM_016376	HPRD:09717	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_20021	chr11	74432165	74432487	+	5.60910	NA	promoter-TSS (NR_039845)	promoter-TSS (NR_039845)	-944	NR_039845	100616402		NR_039845		MIR4696	-	microRNA 4696	ncRNA
19-PTNLD28-TUMOR_peak_79613	chr5	39570170	39570278	+	5.60910	NA	Intergenic	Intergenic	49691	NR_104632	101926940	Hs.436359	NR_104632	ENSG00000271334	LOC101926940	-	uncharacterized LOC101926940	ncRNA
19-PTNLD28-TUMOR_peak_69569	chr3	106990795	106990884	+	5.60910	NA	intron (NR_028302, intron 1 of 3)	intron (NR_028302, intron 1 of 3)	31300	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	LINC00883	-	long intergenic non-protein coding RNA 883	ncRNA
19-PTNLD28-TUMOR_peak_58106	chr2	208905546	208905718	+	5.60910	NA	Intergenic	L2b|LINE|L2	-15348	NM_001080475	389072	Hs.159188	NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing, family M, member 3	protein-coding
19-PTNLD28-TUMOR_peak_99547	chr8	95370069	95370158	+	5.60910	NA	Intergenic	Intergenic	79067	NM_001205263	25788	Hs.30561	NM_006550	HPRD:05049	RAD54B	RDH54	RAD54 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_28398	chr13	63217144	63217312	+	5.60910	NA	Intergenic	LTR10F|LTR|ERV1	153597	NR_047029	100874176	Hs.402083	NR_047029		LINC00448	-	long intergenic non-protein coding RNA 448	ncRNA
19-PTNLD28-TUMOR_peak_77181	chr4	140201290	140201407	+	5.60910	NA	5' UTR (NM_032623, exon 1 of 4)	5' UTR (NM_032623, exon 1 of 4)	144	NM_032623	84709	Hs.710036	NM_032623	HPRD:17805	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria-localized glutamic acid-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_77241	chr4	140958670	140958765	+	5.60910	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	116516	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_108836	chrX	80282835	80282928	+	5.60910	NA	Intergenic	L1PA4|LINE|L1	-174422	NM_003022	6451	Hs.108029	NM_003022	HPRD:02178	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate-rich protein like	protein-coding
19-PTNLD28-TUMOR_peak_12874	chr10	33873634	33873753	+	5.60910	NA	Intergenic	LTR19A|LTR|ERV1	187915	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_73332	chr3	193822229	193822372	+	5.60910	NA	Intergenic	MIR3|SINE|MIR	-31631	NM_005524	3280	Hs.250666	NM_005524	HPRD:00770	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_2893	chr1	42440945	42441140	+	5.60910	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	-56546	NR_038260	59269	Hs.403972	NM_024503	HPRD:09442	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_97039	chr8	8209967	8210107	+	5.60910	NA	intron (NM_001080826, intron 2 of 4)	intron (NM_001080826, intron 2 of 4)	29307	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_21040	chr11	108657162	108657251	+	5.60910	NA	intron (NM_004398, intron 13 of 17)	L1PA16|LINE|L1	121454	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_83761	chr5	168213315	168213414	+	5.60910	NA	intron (NM_003062, intron 11 of 35)	intron (NM_003062, intron 11 of 35)	-18104	NR_029632	407001		NR_029632		MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
19-PTNLD28-TUMOR_peak_86423	chr6	29960720	29960809	+	5.60910	NA	Intergenic	MIRc|SINE|MIR	-12984	NR_024240	3137	Hs.720762	NR_024240		HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_40129	chr17	8838570	8838779	+	5.60910	NA	intron (NM_001251851, intron 1 of 18)	intron (NM_001251851, intron 1 of 18)	-22840	NM_014308	23533	Hs.278901	NM_014308	HPRD:11433	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase, regulatory subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_22421	chr12	1544790	1544922	+	5.60910	NA	intron (NR_027949, intron 14 of 15)	intron (NR_027949, intron 14 of 15)	-64801	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
19-PTNLD28-TUMOR_peak_36508	chr16	15707605	15707779	+	5.60910	NA	intron (NM_014647, intron 16 of 26)	intron (NM_014647, intron 16 of 26)	-2740	NR_106761	102465252		NR_106761		MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
19-PTNLD28-TUMOR_peak_66180	chr3	1776291	1776396	+	5.60910	NA	Intergenic	Intergenic	-364207	NM_175607	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_52457	chr2	44059000	44059258	+	5.60910	NA	exon (NM_022436, exon 3 of 13)	exon (NM_022436, exon 3 of 13)	6829	NM_022436	64240	Hs.132992	NM_022436	HPRD:05678	ABCG5	STSL	ATP-binding cassette, sub-family G (WHITE), member 5	protein-coding
19-PTNLD28-TUMOR_peak_38096	chr16	57989566	57989731	+	5.60910	NA	intron (NM_001135639, intron 12 of 12)	MLT1C|LTR|ERVL-MaLR	15372	NM_001135639	1258	Hs.147062	NM_001297	HPRD:07204	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel beta 1	protein-coding
19-PTNLD28-TUMOR_peak_30361	chr14	54260923	54261145	+	5.60910	NA	Intergenic	Intergenic	154168	NR_049843	100847076		NR_049843	miRBase:MI0019135	MIR5580	-	microRNA 5580	ncRNA
19-PTNLD28-TUMOR_peak_20263	chr11	78371130	78371234	+	5.60910	NA	intron (NM_001098816, intron 33 of 33)	intron (NM_001098816, intron 33 of 33)	-85273	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_98997	chr8	64425474	64425562	+	5.60910	NA	Intergenic	AluYb8|SINE|Alu	-256470	NR_038875	286184	Hs.586402	NR_038875	ENSG00000253734	LINC01289	-	long intergenic non-protein coding RNA 1289	ncRNA
19-PTNLD28-TUMOR_peak_80894	chr5	78843967	78844068	+	5.60910	NA	Intergenic	MER5B|DNA|hAT-Charlie	-34358	NM_001277078	9456	Hs.591761	NM_004272		HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_18412	chr11	46582408	46582496	+	5.60910	NA	intron (NM_001300731, intron 1 of 16)	intron (NM_001300731, intron 1 of 16)	30462	NM_017749	55626	Hs.654644	NM_017749	HPRD:10975	AMBRA1	DCAF3|WDR94	autophagy/beclin-1 regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_88083	chr6	54757741	54757946	+	5.60910	NA	intron (NM_001010872, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	46274	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_31698	chr14	91932681	91932830	+	5.60910	NA	intron (NM_001284281, intron 8 of 12)	intron (NM_001284281, intron 8 of 12)	44069	NM_001284280	55671	Hs.533887	NM_017936	HPRD:11176	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding
19-PTNLD28-TUMOR_peak_55768	chr2	132310631	132310719	+	5.60910	NA	intron (NR_046946, intron 2 of 2)	intron (NR_046946, intron 2 of 2)	25268	NM_001258304	90557	Hs.351461	NM_138770	HPRD:14274	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
19-PTNLD28-TUMOR_peak_15387	chr10	104629165	104629287	+	5.60910	NA	promoter-TSS (NM_020682)	promoter-TSS (NM_020682)	16	NM_020682	57412	Hs.720370	NM_020682	HPRD:16511	AS3MT	CYT19	arsenite methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_71920	chr3	156549804	156549919	+	5.60910	NA	intron (NM_001004316, intron 2 of 12)	HERV35I-int|LTR|ERV1	5713	NM_001193283	389170	Hs.478048	NM_001004316	HPRD:16915	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
19-PTNLD28-TUMOR_peak_69976	chr3	116477168	116477292	+	5.60910	NA	Intergenic	Intergenic	48595	NR_015391	285194	Hs.120364	NR_015391		TUSC7	LINC00902|LSAMP-AS1|LSAMP-AS3|NCRNA00295	tumor suppressor candidate 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20946	chr11	106115478	106115641	+	5.60910	NA	Intergenic	MER21C|LTR|ERVL	-5187	NR_120552	101928535	Hs.409078	NR_120551	ENSG00000254811	LOC101928535	-	uncharacterized LOC101928535	ncRNA
19-PTNLD28-TUMOR_peak_89767	chr6	143175053	143175141	+	5.60910	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	91241	NM_006734	3097	Hs.510172	NM_006734	HPRD:00881	HIVEP2	HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_34735	chr15	79237161	79237582	+	5.60910	NA	promoter-TSS (NM_004390)	promoter-TSS (NM_004390)	49	NM_004390	1512	Hs.148641	NM_004390		CTSH	ACC-4|ACC-5|CPSB|minichain	cathepsin H	protein-coding
19-PTNLD28-TUMOR_peak_11284	chr1	240895753	240895846	+	5.60910	NA	Intergenic	Intergenic	-120337	NM_022469	64388	Hs.98206	NM_022469	HPRD:16390	GREM2	CKTSF1B2|DAND3|PRDC	gremlin 2, DAN family BMP antagonist	protein-coding
19-PTNLD28-TUMOR_peak_98949	chr8	61325289	61325379	+	5.60910	NA	intron (NR_103854, intron 1 of 2)	intron (NR_103854, intron 1 of 2)	1043	NR_103854	100505532	Hs.720321	NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA
19-PTNLD28-TUMOR_peak_97427	chr8	19540014	19540235	+	5.60910	NA	promoter-TSS (NM_018371)	promoter-TSS (NM_018371)	-30	NM_018371	55790	Hs.613729	NM_018371	HPRD:13114	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_101370	chr8	141007388	141007572	+	5.60910	NA	intron (NM_031466, intron 18 of 22)	intron (NM_031466, intron 18 of 22)	-292181	NM_001282534	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_109184	chrX	110565544	110565648	+	5.60910	NA	intron (NM_178151, intron 5 of 6)	intron (NM_178151, intron 5 of 6)	-51822	NM_014289	827	Hs.496593	NM_014289	HPRD:02145	CAPN6	CANPX|CAPNX|CalpM|DJ914P14.1	calpain 6	protein-coding
19-PTNLD28-TUMOR_peak_75526	chr4	63468098	63468246	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-440689	NR_110595	101927186	Hs.723269	NR_110595		LPHN3-AS1	-	LPHN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30379	chr14	54600783	54600884	+	5.60910	NA	Intergenic	Intergenic	-177279	NM_001202	652	Hs.68879	NM_001202	HPRD:00207	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
19-PTNLD28-TUMOR_peak_44683	chr18	12911132	12911293	+	5.60910	NA	Intergenic	CpG	-26878	NM_002828	5771	Hs.654527	NM_002828	HPRD:06768	PTPN2	PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
19-PTNLD28-TUMOR_peak_107723	chrX	19390423	19390551	+	5.60910	NA	intron (NM_001001671, intron 22 of 28)	intron (NM_001001671, intron 22 of 28)	28476	NM_001173454	5160	Hs.530331	NM_000284	HPRD:02420	PDHA1	PDHA|PDHCE1A|PHE1A	pyruvate dehydrogenase (lipoamide) alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_32845	chr15	31246310	31246404	+	5.60910	NA	intron (NM_017762, intron 10 of 15)	intron (NM_017762, intron 10 of 15)	37450	NM_017762	54893	Hs.30141	NM_017762	HPRD:07895	MTMR10	-	myotubularin related protein 10	protein-coding
19-PTNLD28-TUMOR_peak_28773	chr13	98599629	98599761	+	5.60910	NA	Intergenic	Intergenic	-6234	NM_002271	3843	Hs.712598	NM_002271	HPRD:03597	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
19-PTNLD28-TUMOR_peak_75578	chr4	69028061	69028154	+	5.60910	NA	Intergenic	L1PA13|LINE|L1	-19903	NR_015446	100130017	Hs.582037	NR_015446	ENSG00000250426	FTLP10	-	ferritin, light polypeptide pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_83795	chr5	168860453	168860541	+	5.60910	NA	Intergenic	Intergenic	-132364	NM_003062	6586	Hs.552087	NM_003062	HPRD:04775	SLIT3	MEGF5|SLIL2|SLIT1|Slit-3|slit2	slit homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_67709	chr3	42138891	42139016	+	5.60910	NA	intron (NM_001265608, intron 1 of 13)	intron (NM_001265608, intron 1 of 13)	6207	NM_001265608	22906	Hs.535711	NM_014965	HPRD:09732	TRAK1	MILT1|OIP106	trafficking protein, kinesin binding 1	protein-coding
19-PTNLD28-TUMOR_peak_15746	chr10	115805183	115805271	+	5.60910	NA	exon (NM_000684, exon 1 of 1)	exon (NM_000684, exon 1 of 1)	1421	NM_000684	153	Hs.99913	NM_000684	HPRD:00181	ADRB1	ADRB1R|B1AR|BETA1AR|RHR	adrenoceptor beta 1	protein-coding
19-PTNLD28-TUMOR_peak_88377	chr6	75794978	75795071	+	5.60910	NA	3' UTR (NM_004370, exon 66 of 66)	3' UTR (NM_004370, exon 66 of 66)	120599	NM_080645	1303	Hs.101302	NM_004370	HPRD:00377	COL12A1	BA209D8.1|COL12A1L|DJ234P15.1	collagen, type XII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_109108	chrX	106990962	106991050	+	5.60910	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	28011	NM_198057	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_60183	chr20	23016030	23016119	+	5.60910	NA	promoter-TSS (NM_001052)	promoter-TSS (NM_001052)	17	NM_001052	6754	Hs.673846	NM_001052	HPRD:01676	SSTR4	SS-4-R|SS4-R|SS4R	somatostatin receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_40739	chr17	25861282	25861412	+	5.60910	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	62311	NM_014238	8844	Hs.133534	NM_014238		KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
19-PTNLD28-TUMOR_peak_17744	chr11	27775846	27775934	+	5.60910	NA	Intergenic	Intergenic	-32285	NM_170731	627	Hs.502182	NM_001709	HPRD:00214	BDNF	ANON2|BULN2	brain-derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_27693	chr13	31060597	31060884	+	5.60910	NA	Intergenic	Intergenic	-20659	NM_002128	3146	Hs.434102	NM_002128	HPRD:01228	HMGB1	HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
19-PTNLD28-TUMOR_peak_69975	chr3	116383255	116383343	+	5.60910	NA	Intergenic	AluY|SINE|Alu	-45336	NR_015391	285194	Hs.120364	NR_015391		TUSC7	LINC00902|LSAMP-AS1|LSAMP-AS3|NCRNA00295	tumor suppressor candidate 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_108783	chrX	75249384	75249515	+	5.60910	NA	Intergenic	CpG	-143315	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_48663	chr19	35714900	35714988	+	5.60910	NA	TTS (NM_152481)	TTS (NM_152481)	4684	NM_152481	148109	Hs.128069	NM_152481	HPRD:08071	FAM187B	TMEM162	family with sequence similarity 187, member B	protein-coding
19-PTNLD28-TUMOR_peak_12286	chr10	20292736	20292853	+	5.60910	NA	intron (NM_001282736, intron 2 of 12)	MER89|LTR|ERV1	187422	NM_032812	84898	Hs.99472	NM_032812	HPRD:08440	PLXDC2	TEM7R	plexin domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_72171	chr3	166085831	166086210	+	5.60910	NA	Intergenic	L1M1|LINE|L1	-530767	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_54621	chr2	103249006	103249227	+	5.60910	NA	intron (NM_003048, intron 1 of 11)	intron (NM_003048, intron 1 of 11)	12950	NM_003048	6549	Hs.250083	NM_003048	HPRD:02756	SLC9A2	NHE2	solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2	protein-coding
19-PTNLD28-TUMOR_peak_98928	chr8	59769050	59769179	+	5.60910	NA	intron (NM_014729, intron 3 of 8)	MLT1J|LTR|ERVL-MaLR	-196710	NM_003580	8439	Hs.372000	NM_003580	HPRD:09117	NSMAF	FAN	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
19-PTNLD28-TUMOR_peak_20347	chr11	81359085	81359212	+	5.60910	NA	Intergenic	Intergenic	242730	NR_036186	100422823		NR_036186	miRBase:MI0015831	MIR4300	-	microRNA 4300	ncRNA
19-PTNLD28-TUMOR_peak_17108	chr11	10669194	10669361	+	5.60910	NA	intron (NM_001206881, intron 1 of 18)	intron (NM_001206881, intron 1 of 18)	4571	NM_001098579	10335	Hs.501898	NM_130385	HPRD:05242	MRVI1	IRAG|JAW1L	murine retrovirus integration site 1 homolog	protein-coding
19-PTNLD28-TUMOR_peak_70166	chr3	122487181	122487304	+	5.60910	NA	intron (NM_024610, intron 3 of 7)	intron (NM_024610, intron 3 of 7)	25424	NM_024610	79663	Hs.29169	NM_024610	HPRD:12197	HSPBAP1	PASS1	HSPB (heat shock 27kDa) associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_45139	chr18	30254590	30254678	+	5.60910	NA	exon (NM_020805, exon 9 of 9)	exon (NM_020805, exon 9 of 9)	98340	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_21209	chr11	112614910	112615105	+	5.60910	NA	Intergenic	Intergenic	-188482	NR_104155	387810	Hs.512255	NR_104155	ENSG00000255484	LOC387810	-	uncharacterized LOC387810	ncRNA
19-PTNLD28-TUMOR_peak_31120	chr14	71073183	71073360	+	5.60910	NA	Intergenic	L2c|LINE|L2	-5864	NM_001284210	10001	Hs.497353	NM_005466	HPRD:04284	MED6	ARC33|NY-REN-28	mediator complex subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_82040	chr5	130445772	130445890	+	5.60910	NA	Intergenic	Intergenic	55210	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_38802	chr16	77205810	77205908	+	5.60910	NA	Intergenic	Intergenic	-18957	NM_014940	22879	Hs.513743	NM_014940		MON1B	HSRG1|SAND2|SRG1	MON1 secretory trafficking family member B	protein-coding
19-PTNLD28-TUMOR_peak_36354	chr16	12322742	12322844	+	5.60910	NA	intron (NM_032167, intron 14 of 20)	L2a|LINE|L2	252191	NM_032167	92017	Hs.458401	NM_032167	HPRD:17437	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
19-PTNLD28-TUMOR_peak_69299	chr3	89993638	89993774	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	837032	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_77309	chr4	141897652	141897832	+	5.60910	NA	intron (NM_020724, intron 1 of 6)	L2|LINE|L2	156874	NM_020724	57484	Hs.659104	NM_020724	HPRD:15258	RNF150	-	ring finger protein 150	protein-coding
19-PTNLD28-TUMOR_peak_104229	chr9	87267499	87267625	+	5.60910	NA	Intergenic	Intergenic	-15811	NM_001291937	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_92142	chr7	41196016	41196216	+	5.60910	NA	Intergenic	Intergenic	54914	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA
19-PTNLD28-TUMOR_peak_18436	chr11	47093508	47093644	+	5.60910	NA	intron (NM_001003676, intron 3 of 7)	intron (NM_001003676, intron 3 of 7)	105100	NM_001242832	84364	Hs.436204	NM_032389	HPRD:06069	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP-ribosylation factor GTPase activating protein 2	protein-coding
19-PTNLD28-TUMOR_peak_61031	chr20	38147506	38147594	+	5.60910	NA	Intergenic	Intergenic	-294159	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_34773	chr15	80729149	80729237	+	5.60910	NA	intron (NM_014862, intron 1 of 18)	intron (NM_014862, intron 1 of 18)	32501	NM_014862	9915	Hs.459070	NM_014862	ENSG00000172379	ARNT2	WEDAS|bHLHe1	aryl-hydrocarbon receptor nuclear translocator 2	protein-coding
19-PTNLD28-TUMOR_peak_640	chr1	9852386	9852487	+	5.60910	NA	intron (NM_001009566, intron 1 of 18)	intron (NM_001009566, intron 1 of 18)	32114	NM_001009566	22883	Hs.29665	NM_014944	HPRD:10837	CLSTN1	ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
19-PTNLD28-TUMOR_peak_12307	chr10	21520591	21520679	+	5.60910	NA	Intergenic	L2b|LINE|L2	57404	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69217	chr3	81793660	81793760	+	5.60910	NA	intron (NM_000158, intron 1 of 15)	intron (NM_000158, intron 1 of 15)	17240	NM_000158	2632	Hs.436062	NM_000158	HPRD:01985	GBE1	APBD|GBE|GSD4	glucan (1,4-alpha-), branching enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_37643	chr16	47906262	47906402	+	5.60910	NA	intron (NR_110650, intron 2 of 5)	MER113|DNA|hAT-Charlie	13840	NR_110650	101927132	Hs.589404	NR_110650	ENSG00000261231	LOC101927132	-	uncharacterized LOC101927132	ncRNA
19-PTNLD28-TUMOR_peak_89164	chr6	113301113	113301201	+	5.60910	NA	Intergenic	Intergenic	632625	NM_001013734	442247	Hs.448264	NM_001013734	HPRD:18472	RFPL4B	RNF211	ret finger protein-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_1449	chr1	23704022	23704124	+	5.60910	NA	Intergenic	Intergenic	-7716	NM_001077195	80818	Hs.293798	NM_030634	HPRD:15793	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding
19-PTNLD28-TUMOR_peak_79636	chr5	40570658	40570771	+	5.60910	NA	Intergenic	Intergenic	-109318	NM_000958	5734	Hs.199248	NM_000958	HPRD:03350	PTGER4	EP4|EP4R	prostaglandin E receptor 4 (subtype EP4)	protein-coding
19-PTNLD28-TUMOR_peak_1339	chr1	21835628	21835729	+	5.60910	NA	promoter-TSS (NM_001177520)	promoter-TSS (NM_001177520)	-180	NM_001127501	249	Hs.75431	NM_000478	HPRD:01377	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding
19-PTNLD28-TUMOR_peak_8837	chr1	184836423	184836548	+	5.60910	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	107233	NM_052966	116496	Hs.518662	NM_052966	HPRD:10725	FAM129A	C1orf24|NIBAN	family with sequence similarity 129, member A	protein-coding
19-PTNLD28-TUMOR_peak_9871	chr1	209422805	209422893	+	5.60910	NA	Intergenic	Intergenic	-179319	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_105705	chr9	119299090	119299267	+	5.60910	NA	intron (NR_033973, intron 1 of 11)	L1PA5|LINE|L1	32616	NR_033973	100128505	Hs.675821	NR_033973	ENSG00000229105	ASTN2-AS1	-	ASTN2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98734	chr8	52892613	52892713	+	5.60910	NA	Intergenic	LTR8|LTR|ERV1	-80917	NM_001286783	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89795	chr6	144048313	144048430	+	5.60910	NA	intron (NM_001100166, intron 2 of 11)	L1MA4A|LINE|L1	49269	NM_001100165	9749	Hs.102471	NM_014721	HPRD:16378	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_45257	chr18	34389606	34389772	+	5.60910	NA	intron (NM_001271950, intron 2 of 5)	intron (NM_001271950, intron 2 of 5)	-19391	NM_020776	57536	Hs.4045	NM_020776	HPRD:17211	KIAA1328	-	KIAA1328	protein-coding
19-PTNLD28-TUMOR_peak_35200	chr15	90844565	90844653	+	5.60910	NA	Intergenic	Intergenic	-35618	NR_102428	10519	Hs.715556	NM_006384		CIB1	CIB|CIBP|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1 (calmyrin)	protein-coding
19-PTNLD28-TUMOR_peak_64941	chr22	28551953	28552093	+	5.60910	NA	intron (NM_001145418, intron 6 of 22)	intron (NM_001145418, intron 6 of 22)	-235423	NR_036169	100423034		NR_036169	miRBase:MI0014247	MIR3199-1	-	microRNA 3199-1	ncRNA
19-PTNLD28-TUMOR_peak_63432	chr21	38255207	38255460	+	5.60910	NA	intron (NM_001242785, intron 7 of 11)	intron (NM_001242785, intron 7 of 11)	83623	NM_001242784	3141	Hs.371350	NM_000411	HPRD:08360	HLCS	HCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	protein-coding
19-PTNLD28-TUMOR_peak_108436	chrX	55339230	55339345	+	5.60910	NA	Intergenic	Intergenic	-48122	NR_033460	139793	Hs.163473	NM_001017931	HPRD:18552	PAGE3	CT16.6|GAGED1|PAGE-3	P antigen family, member 3 (prostate associated)	pseudo
19-PTNLD28-TUMOR_peak_16866	chr11	6400621	6400709	+	5.60910	NA	Intergenic	Intergenic	-10979	NM_001007593	6609	Hs.498173	NM_000543	HPRD:06353	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding
19-PTNLD28-TUMOR_peak_15233	chr10	102268617	102268713	+	5.60910	NA	intron (NM_015490, intron 5 of 25)	intron (NM_015490, intron 5 of 25)	10930	NM_015490	25956	Hs.18889	NM_015490	HPRD:15315	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_89116	chr6	111855766	111855854	+	5.60910	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	32753	NM_001164283	10758	Hs.561514	NM_147200	HPRD:06129	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_89696	chr6	139890087	139890192	+	5.60910	NA	Intergenic	L3|LINE|CR1	-94406	NR_033919	645434	Hs.666240	NR_033919		LOC645434	-	uncharacterized LOC645434	ncRNA
19-PTNLD28-TUMOR_peak_90017	chr6	151120491	151120612	+	5.60910	NA	intron (NM_001029884, intron 6 of 16)	intron (NM_001029884, intron 6 of 16)	-66264	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_25400	chr12	77718578	77718777	+	5.60910	NA	Intergenic	CpG	-259317	NM_203394	144455	Hs.416375	NM_203394	HPRD:10929	E2F7	-	E2F transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_62935	chr21	23572827	23572915	+	5.60910	NA	Intergenic	L1MB1|LINE|L1	101935	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308	long intergenic non-protein coding RNA 308	ncRNA
19-PTNLD28-TUMOR_peak_18236	chr11	44307994	44308096	+	5.60910	NA	intron (NM_021926, intron 1 of 3)	intron (NM_021926, intron 1 of 3)	23671	NM_021926	60529	Hs.436055	NM_021926	HPRD:05661	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
19-PTNLD28-TUMOR_peak_5227	chr1	102657444	102657539	+	5.60910	NA	Intergenic	Intergenic	-194701	NR_110211	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
19-PTNLD28-TUMOR_peak_58528	chr2	220540033	220540177	+	5.60910	NA	Intergenic	Intergenic	47813	NR_048551	6508	Hs.1176	NM_005070	HPRD:00109	SLC4A3	AE3|SLC2C	solute carrier family 4 (anion exchanger), member 3	protein-coding
19-PTNLD28-TUMOR_peak_99207	chr8	74261772	74261904	+	5.60910	NA	intron (NR_125388, intron 1 of 5)	L2c|LINE|L2	6858	NR_125388	101926926	Hs.640090	NR_125388		LOC101926926	-	uncharacterized LOC101926926	ncRNA
19-PTNLD28-TUMOR_peak_37603	chr16	46569594	46569864	+	5.60910	NA	intron (NR_026556, intron 6 of 16)	L1PA3|LINE|L1	33280	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_35092	chr15	88817925	88818013	+	5.60910	NA	Intergenic	Intergenic	-18007	NM_001012338	4916	Hs.410969	NM_002530	HPRD:01870	NTRK3	TRKC|gp145(trkC)	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_68750	chr3	63953511	63953695	+	5.60910	NA	exon (NM_001128149, exon 1 of 9)	exon (NM_001128149, exon 1 of 9)	183	NM_001128149	6314	Hs.476595	NM_000333	HPRD:06365	ATXN7	ADCAII|OPCA3|SCA7	ataxin 7	protein-coding
19-PTNLD28-TUMOR_peak_104425	chr9	91349139	91349241	+	5.60910	NA	Intergenic	Intergenic	11630	NR_036252	100423015		NR_036252	miRBase:MI0015898	MIR4289	-	microRNA 4289	ncRNA
19-PTNLD28-TUMOR_peak_107492	chrX	9310713	9310801	+	5.60910	NA	Intergenic	Intergenic	-120578	NM_001139468	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_11213	chr1	238205946	238206067	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-151784	NM_021186	57829	Hs.136241	NM_021186		ZP4	ZBP|ZP1|ZPB|Zp-4	zona pellucida glycoprotein 4	protein-coding
19-PTNLD28-TUMOR_peak_91462	chr7	19838623	19838837	+	5.60910	NA	Intergenic	Intergenic	-26326	NM_152774	256130	Hs.487670	NM_152774	HPRD:14617	TMEM196	-	transmembrane protein 196	protein-coding
19-PTNLD28-TUMOR_peak_93766	chr7	85949642	85949782	+	5.60910	NA	Intergenic	Intergenic	-323518	NM_000840	2913	Hs.590575	NM_000840	HPRD:03070	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate receptor, metabotropic 3	protein-coding
19-PTNLD28-TUMOR_peak_73870	chr4	1830024	1830149	+	5.60910	NA	intron (NM_012318, intron 6 of 13)	SVA_F|Other|Other	27888	NM_012318	3954	Hs.120165	NM_012318	HPRD:05101	LETM1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_94851	chr7	111832456	111832549	+	5.60910	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	13960	NM_014705	9732	Hs.654652	NM_014705	HPRD:07407	DOCK4	-	dedicator of cytokinesis 4	protein-coding
19-PTNLD28-TUMOR_peak_75536	chr4	65010869	65011018	+	5.60910	NA	Intergenic	HERVK11-int|LTR|ERVK	264235	NM_001010874	253017	Hs.227752	NM_001010874		TECRL	GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding
19-PTNLD28-TUMOR_peak_11592	chr10	328378	328483	+	5.60910	NA	intron (NM_014974, intron 35 of 36)	intron (NM_014974, intron 35 of 36)	102496	NM_001202468	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_66158	chr3	353156	353333	+	5.60910	NA	intron (NM_001253387, intron 2 of 26)	MER20B|DNA|hAT-Charlie	-8122	NM_001253388	10752	Hs.148909	NM_006614	HPRD:07598	CHL1	CALL|L1CAM2	cell adhesion molecule L1-like	protein-coding
19-PTNLD28-TUMOR_peak_52347	chr2	42477106	42477332	+	5.60910	NA	intron (NM_019063, intron 2 of 22)	intron (NM_019063, intron 2 of 22)	-79848	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
19-PTNLD28-TUMOR_peak_52751	chr2	51330379	51330572	+	5.60910	NA	Intergenic	Intergenic	-70801	NM_001135659	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_90989	chr7	3444265	3444388	+	5.60910	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	103246	NM_152744	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_45544	chr18	45012921	45013029	+	5.60910	NA	Intergenic	AluSx1|SINE|Alu	-237421	NM_001278063	652991	Hs.585834	NM_001037802	ENSG00000215474	SKOR2	CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_64910	chr22	27748821	27748909	+	5.60910	NA	Intergenic	Intergenic	448621	NM_002430	4330	Hs.268515	NM_002430	HPRD:08862	MN1	MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	meningioma (disrupted in balanced translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_36602	chr16	19045141	19045337	+	5.60910	NA	intron (NM_001300732, intron 6 of 14)	intron (NM_001300732, intron 6 of 14)	33566	NR_119382	102723385	Hs.569608	NR_119379		LOC102723385	-	uncharacterized LOC102723385	ncRNA
19-PTNLD28-TUMOR_peak_4369	chr1	75037771	75037868	+	5.60910	NA	exon (NM_001002912, exon 14 of 15)	exon (NM_001002912, exon 14 of 15)	-5295	NR_121671	101927320	Hs.662589	NR_121670		ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88756	chr6	90854248	90854342	+	5.60910	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	152332	NM_021813	60468	Hs.269764	NM_021813	HPRD:12012	BACH2	BTBD25	BTB and CNC homology 1, basic leucine zipper transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_34268	chr15	70433109	70433197	+	5.60910	NA	Intergenic	Intergenic	-42897	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_89848	chr6	147289328	147289448	+	5.60910	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-164428	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin p80 subunit B-like 1 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_107758	chrX	20626699	20626822	+	5.60910	NA	Intergenic	Intergenic	-342010	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_88015	chr6	53302460	53302572	+	5.60910	NA	Intergenic	Intergenic	-88539	NM_001242828	60481	Hs.520189	NM_021814	HPRD:13268	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
19-PTNLD28-TUMOR_peak_25817	chr12	101445975	101446079	+	5.60910	NA	intron (NM_001286616, intron 13 of 26)	intron (NM_001286616, intron 13 of 26)	150603	NM_001286616	121601	Hs.58785	NM_178826	HPRD:15527	ANO4	TMEM16D	anoctamin 4	protein-coding
19-PTNLD28-TUMOR_peak_91708	chr7	26101374	26101528	+	5.60910	NA	Intergenic	Intergenic	-90396	NM_004289	9603	Hs.404741	NM_004289	HPRD:09162	NFE2L3	NRF3	nuclear factor, erythroid 2-like 3	protein-coding
19-PTNLD28-TUMOR_peak_53643	chr2	76906297	76906409	+	5.60910	NA	Intergenic	Intergenic	-306738	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA
19-PTNLD28-TUMOR_peak_20772	chr11	96880847	96881013	+	5.60910	NA	Intergenic	Intergenic	609965	NR_107016	102465857		NR_107016		MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
19-PTNLD28-TUMOR_peak_71592	chr3	149028739	149028893	+	5.60910	NA	Intergenic	Intergenic	22443	NM_001184723	116441	Hs.22026	NM_138786	HPRD:14018	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
19-PTNLD28-TUMOR_peak_30261	chr14	51648939	51649031	+	5.60910	NA	Intergenic	Intergenic	-57901	NM_030755	81542	Hs.125221	NM_030755		TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin-related transmembrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_13299	chr10	45504212	45504300	+	5.60910	NA	Intergenic	Intergenic	-7786	NM_001039380	220979	Hs.707791	NM_001039380	ENSG00000165511	C10orf25	-	chromosome 10 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_25888	chr12	104165356	104165444	+	5.60910	NA	TTS (NM_001031701)	TTS (NM_001031701)	69575	NM_001031701	51559	Hs.48428	NM_016575	HPRD:18241	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_4487	chr1	79659266	79659407	+	5.60910	NA	Intergenic	Intergenic	-186841	NM_022159	64123	Hs.132314	NM_022159	ENSG00000162618	ELTD1	ETL|KPG_003	EGF, latrophilin and seven transmembrane domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_25728	chr12	97603923	97604092	+	5.60910	NA	Intergenic	L2b|LINE|L2	-254792	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_15652	chr10	113320042	113320139	+	5.60910	NA	Intergenic	Intergenic	483300	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_85245	chr6	9533215	9533331	+	5.60910	NA	Intergenic	Intergenic	-879278	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_106541	chr9	135675654	135675742	+	5.60910	NA	intron (NM_152572, intron 10 of 12)	intron (NM_152572, intron 10 of 12)	78500	NM_152572	158067	Hs.421340	NM_152572	HPRD:12991	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_57532	chr2	192521304	192521444	+	5.60910	NA	Intergenic	Intergenic	-21424	NM_001254736	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_6999	chr1	153651548	153651659	+	5.60910	NA	exon (NM_000906, exon 1 of 22)	exon (NM_000906, exon 1 of 22)	439	NM_000906	4881	Hs.490330	NM_000906	HPRD:00165	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_55179	chr2	116170207	116170295	+	5.60910	NA	intron (NM_001004360, intron 3 of 25)	intron (NM_001004360, intron 3 of 25)	250567	NM_001004360	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_66210	chr3	3269450	3269563	+	5.60910	NA	Intergenic	Intergenic	-48105	NM_001173482	51185	Hs.18925	NM_016302	HPRD:16750	CRBN	MRT2|MRT2A	cereblon	protein-coding
19-PTNLD28-TUMOR_peak_78443	chr4	187825357	187825499	+	5.60910	NA	Intergenic	Intergenic	-180441	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_31994	chr14	99878551	99878724	+	5.60910	NA	intron (NM_199123, intron 8 of 8)	intron (NM_199123, intron 8 of 8)	68589	NM_032233	84193	Hs.510407	NM_032233	HPRD:08664	SETD3	C14orf154	SET domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_12960	chr10	36147748	36147836	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	80562	NR_110138	102578074		NR_110138		LINC01452	PCAT5|TPCAT-10-36067	long intergenic non-protein coding RNA 1452	ncRNA
19-PTNLD28-TUMOR_peak_5939	chr1	119563705	119563794	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-31570	NM_152380	6913	Hs.146196	NM_152380	HPRD:16035	TBX15	TBX14	T-box 15	protein-coding
19-PTNLD28-TUMOR_peak_81443	chr5	106812708	106812857	+	5.60910	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	193814	NM_001962	1946	Hs.288741	NM_001962	HPRD:03324	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin-A5	protein-coding
19-PTNLD28-TUMOR_peak_51410	chr2	19823268	19823532	+	5.60910	NA	Intergenic	L1MD3|LINE|L1	-245215	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
19-PTNLD28-TUMOR_peak_80763	chr5	75181407	75181534	+	5.60910	NA	Intergenic	FAM|SINE|Alu	-168157	NM_001099271	134359	Hs.432726	NM_152408	HPRD:08188	POC5	C5orf37	POC5 centriolar protein	protein-coding
19-PTNLD28-TUMOR_peak_58439	chr2	219598602	219598690	+	5.60910	NA	intron (NM_014640, intron 2 of 19)	intron (NM_014640, intron 2 of 19)	23078	NM_014640	9654	Hs.471405	NM_014640	HPRD:15586	TTLL4	-	tubulin tyrosine ligase-like family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_12177	chr10	15944756	15944844	+	5.60910	NA	Intergenic	Intergenic	-42281	NM_024948	80013	Hs.158870	NM_024948	HPRD:10702	FAM188A	C10orf97|CARP|DERP5|MST126|my042	family with sequence similarity 188, member A	protein-coding
19-PTNLD28-TUMOR_peak_39242	chr16	86106563	86106658	+	5.60910	NA	Intergenic	Intergenic	-123177	NR_103859	100506542	Hs.111902	NR_103859	ENSG00000269186	LINC01082	TCONS_00024492	long intergenic non-protein coding RNA 1082	ncRNA
19-PTNLD28-TUMOR_peak_1559	chr1	24769939	24770061	+	5.60910	NA	intron (NM_020448, intron 4 of 11)	MER117|DNA|hAT-Charlie	27755	NM_020448	57185	Hs.523442	NM_020448	HPRD:13149	NIPAL3	DJ462O23.2|NPAL3	NIPA-like domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_71481	chr3	144812516	144812630	+	5.60910	NA	Intergenic	MER65B|LTR|ERV1	1066709	NM_000935	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_92975	chr7	66857709	66857869	+	5.60910	NA	Intergenic	LTR9|LTR|ERV1	56826	NR_108104	101929736	Hs.634050	NR_108104		LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
19-PTNLD28-TUMOR_peak_12474	chr10	24995449	24995537	+	5.60910	NA	intron (NM_020824, intron 2 of 25)	intron (NM_020824, intron 2 of 25)	17104	NM_020824	57584	Hs.524195	NM_020824	HPRD:06445	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
19-PTNLD28-TUMOR_peak_104167	chr9	85914486	85914807	+	5.60910	NA	intron (NM_001244960, intron 10 of 13)	intron (NM_001244960, intron 10 of 13)	32230	NM_001244961	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_27358	chr13	20821626	20821879	+	5.60910	NA	Intergenic	Intergenic	-15218	NM_001110219	10804	Hs.511757	NM_006783	HPRD:05107	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	gap junction protein, beta 6, 30kDa	protein-coding
19-PTNLD28-TUMOR_peak_26506	chr12	117369605	117369793	+	5.60910	NA	intron (NM_012174, intron 2 of 10)	L1MA8|LINE|L1	20938	NM_012174	26259	Hs.624537	NM_012174	HPRD:16427	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_109134	chrX	108888346	108888434	+	5.60910	NA	intron (NM_022977, intron 16 of 16)	L1PA3|LINE|L1	-19997	NM_012282	23630	Hs.522753	NM_012282	HPRD:02268	KCNE1L	KCNE5	KCNE1-like	protein-coding
19-PTNLD28-TUMOR_peak_80057	chr5	57318131	57318219	+	5.60910	NA	Intergenic	Intergenic	99993	NR_104669	101928569	Hs.319708	NR_104669	ENSG00000248132	LOC101928569	-	uncharacterized LOC101928569	ncRNA
19-PTNLD28-TUMOR_peak_57650	chr2	198152155	198152243	+	5.60910	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	15044	NR_046837	101927547	Hs.687027	NR_046837		ANKRD44-IT1	-	ANKRD44 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_99577	chr8	96226263	96226432	+	5.60910	NA	intron (NR_046232, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	2255	NR_046232	619344	Hs.741630	NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
19-PTNLD28-TUMOR_peak_29604	chr14	24820997	24821085	+	5.60910	NA	Intergenic	LTR41|LTR|ERVL	-11799	NM_006871	11035	Hs.268551	NM_006871	HPRD:09315	RIPK3	RIP3	receptor-interacting serine-threonine kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_56960	chr2	172811452	172811540	+	5.60910	NA	intron (NM_003642, intron 4 of 10)	MLT1D|LTR|ERVL-MaLR	32561	NR_027862	8520	Hs.632532	NM_003642	HPRD:04339	HAT1	KAT1	histone acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_50866	chr2	5686451	5686665	+	5.60910	NA	Intergenic	Intergenic	144692	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
19-PTNLD28-TUMOR_peak_24858	chr12	59507680	59507768	+	5.60910	NA	Intergenic	LTR41B|LTR|ERVL	-193405	NM_153377	121227	Hs.253736	NM_153377	HPRD:08317	LRIG3	LIG3	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_26486	chr12	116997246	116997402	+	5.60910	NA	intron (NM_001085481, intron 1 of 1)	intron (NM_001085481, intron 1 of 1)	138	NM_001085481	643246	Hs.506947	NM_001085481	ENSG00000171471	MAP1LC3B2	ATG8G	microtubule-associated protein 1 light chain 3 beta 2	protein-coding
19-PTNLD28-TUMOR_peak_28486	chr13	76064260	76064349	+	5.60910	NA	Intergenic	Intergenic	-8054	NM_001286659	9882	Hs.210891	NM_014832	HPRD:18164	TBC1D4	AS160	TBC1 domain family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_31141	chr14	71288652	71288934	+	5.60910	NA	Intergenic	CpG	-12905	NM_033141	4293	Hs.445496	NM_033141	HPRD:15965	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_74914	chr4	35774064	35774152	+	5.60910	NA	Intergenic	Intergenic	-471630	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
19-PTNLD28-TUMOR_peak_101268	chr8	137130196	137130284	+	5.60910	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	660524	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_31238	chr14	74195501	74195607	+	5.60910	NA	intron (NM_001043318, intron 4 of 11)	intron (NM_001043318, intron 4 of 11)	-14426	NM_006029	9240	Hs.194709	NM_006029	HPRD:04926	PNMA1	MA1	paraneoplastic Ma antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_28554	chr13	78118626	78118756	+	5.60910	NA	intron (NM_144777, intron 1 of 32)	intron (NM_144777, intron 1 of 32)	8882	NM_001160706	8796	Hs.534699	NM_003843	HPRD:09161	SCEL	-	sciellin	protein-coding
19-PTNLD28-TUMOR_peak_102241	chr9	14664379	14664548	+	5.60910	NA	intron (NM_178566, intron 5 of 9)	L1PA2|LINE|L1	29017	NM_178566	340481	Hs.649522	NM_178566	HPRD:15716	ZDHHC21	9130404H11Rik|DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger, DHHC-type containing 21	protein-coding
19-PTNLD28-TUMOR_peak_110083	chrY	1652032	1652156	+	5.60910	NA	Intergenic	Intergenic	-8392	NM_005088	8227	Hs.522572	NM_005088	HPRD:02419	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A kinase (PRKA) anchor protein 17A	protein-coding
19-PTNLD28-TUMOR_peak_29079	chr13	111229542	111229671	+	5.60910	NA	Intergenic	AluJb|SINE|Alu	-15535	NM_017817	55647	Hs.743563	NM_017817	HPRD:06694	RAB20	-	RAB20, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_1828	chr1	28431667	28431913	+	5.60910	NA	Intergenic	Intergenic	-16642	NM_001282560	2140	Hs.185774	NM_001990	HPRD:09042	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
19-PTNLD28-TUMOR_peak_4024	chr1	63428618	63428710	+	5.60910	NA	Intergenic	Intergenic	178887	NM_032852	84938	Hs.7353	NM_032852	HPRD:07473	ATG4C	APG4-C|APG4C|AUTL1|AUTL3	autophagy related 4C, cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_90408	chr6	161815036	161815124	+	5.60910	NA	intron (NM_004562, intron 9 of 11)	intron (NM_004562, intron 9 of 11)	-119973	NM_020133	56895	Hs.353175	NM_020133	HPRD:12437	AGPAT4	1-AGPAT4|LPAAT-delta|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_29206	chr13	114638366	114638456	+	5.60910	NA	Intergenic	Intergenic	-6447	NR_047495	100861555	Hs.353773	NR_047495	ENSG00000260910	LINC00565	-	long intergenic non-protein coding RNA 565	ncRNA
19-PTNLD28-TUMOR_peak_37552	chr16	34703481	34703636	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	11409	NR_026980	146481	Hs.316564	NR_026980		LOC146481	-	FSHD region gene 2 family, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_10223	chr1	222368412	222368547	+	5.60910	NA	Intergenic	Intergenic	352965	NM_024746	79802	Hs.665660	NM_024746	HPRD:08587	HHIPL2	KIAA1822L	HHIP-like 2	protein-coding
19-PTNLD28-TUMOR_peak_93713	chr7	83058671	83058789	+	5.60910	NA	intron (NM_012431, intron 4 of 16)	intron (NM_012431, intron 4 of 16)	188007	NR_107016	102465857		NR_107016		MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
19-PTNLD28-TUMOR_peak_35519	chr15	101499118	101499206	+	5.60910	NA	intron (NM_024652, intron 2 of 33)	intron (NM_024652, intron 2 of 33)	39702	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_81162	chr5	92684040	92684134	+	5.60910	NA	Intergenic	Intergenic	222962	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14370	chr10	76025898	76025986	+	5.60910	NA	intron (NM_001123, intron 3 of 10)	Tigger16a|DNA|TcMar-Tigger	89695	NM_001202449	132	Hs.656586	NM_001123	HPRD:00039	ADK	AK	adenosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_29781	chr14	33062568	33062767	+	5.60910	NA	intron (NM_004274, intron 5 of 13)	L3b|LINE|CR1	264188	NM_004274	9472	Hs.509083	NM_004274	HPRD:05257	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A kinase (PRKA) anchor protein 6	protein-coding
19-PTNLD28-TUMOR_peak_16231	chr10	129735484	129735577	+	5.60910	NA	intron (NM_006504, intron 1 of 20)	intron (NM_006504, intron 1 of 20)	30205	NM_006504	5791	Hs.127022	NM_006504	HPRD:02956	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase, receptor type, E	protein-coding
19-PTNLD28-TUMOR_peak_92538	chr7	50700675	50700809	+	5.60910	NA	intron (NM_001001550, intron 4 of 15)	L1PB4|LINE|L1	-67588	NM_001082971	1644	Hs.359698	NM_000790	HPRD:00145	DDC	AADC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	protein-coding
19-PTNLD28-TUMOR_peak_108022	chrX	40944418	40944536	+	5.60910	NA	promoter-TSS (NM_001039590)	promoter-TSS (NM_001039590)	-411	NM_001039590	8239	Hs.77578	NM_004652	HPRD:02091	USP9X	DFFRX|FAF|FAM|MRX99	ubiquitin specific peptidase 9, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_45157	chr18	30548327	30548443	+	5.60910	NA	intron (NM_001105528, intron 21 of 21)	L1MA6|LINE|L1	-195411	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_68433	chr3	54222336	54222424	+	5.60910	NA	intron (NM_018398, intron 2 of 37)	intron (NM_018398, intron 2 of 37)	65687	NM_018398	55799	Hs.656687	NM_018398	HPRD:05907	CACNA2D3	HSA272268	calcium channel, voltage-dependent, alpha 2/delta subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_13736	chr10	60557272	60557360	+	5.60910	NA	intron (NM_001080512, intron 10 of 20)	intron (NM_001080512, intron 10 of 20)	82541	NR_027508	728640	Hs.729209	NR_027508		FAM133CP	-	family with sequence similarity 133, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53469	chr2	73151937	73152025	+	5.60910	NA	intron (NM_004097, intron 2 of 2)	CpG-15107	7377	NM_004097	2016	Hs.516090	NM_004097	HPRD:08963	EMX1	-	empty spiracles homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_12416	chr10	23919992	23920080	+	5.60910	NA	Intergenic	L1M4|LINE|L1	-63639	NM_001098500	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_98496	chr8	42592355	42592452	+	5.60910	NA	TTS (NM_000749)	TTS (NM_000749)	31526	NM_001199279	8973	Hs.103128	NM_004198	HPRD:06056	CHRNA6	CHNRA6	cholinergic receptor, nicotinic, alpha 6 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_15676	chr10	114074748	114074847	+	5.60910	NA	intron (NR_028134, intron 14 of 18)	intron (NR_028134, intron 14 of 18)	-15351	NR_106772	102465427		NR_106772		MIR6715B	hsa-mir-6715b	microRNA 6715b	ncRNA
19-PTNLD28-TUMOR_peak_51608	chr2	25487011	25487137	+	5.60910	NA	intron (NM_175629, intron 6 of 22)	AluSz6|SINE|Alu	-11890	NM_153759	1788	Hs.515840	NM_022552	HPRD:04141	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_88790	chr6	91762332	91762454	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-465373	NM_003188	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_8107	chr1	169519628	169519766	+	5.60910	NA	intron (NM_000130, intron 9 of 24)	intron (NM_000130, intron 9 of 24)	36072	NM_000130	2153	Hs.30054	NM_000130		F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V (proaccelerin, labile factor)	protein-coding
19-PTNLD28-TUMOR_peak_108906	chrX	91502206	91502326	+	5.60910	NA	intron (NM_032969, intron 3 of 5)	intron (NM_032969, intron 3 of 5)	411806	NM_001168362	27328	Hs.655673	NM_014522	HPRD:02215	PCDH11X	PCDH-X|PCDH11|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
19-PTNLD28-TUMOR_peak_96916	chr8	5997573	5997664	+	5.60910	NA	Intergenic	Intergenic	266451	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
19-PTNLD28-TUMOR_peak_58668	chr2	227121009	227121182	+	5.60910	NA	Intergenic	L2a|LINE|L2	113585	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
19-PTNLD28-TUMOR_peak_67186	chr3	24160845	24161010	+	5.60910	NA	3' UTR (NM_000461, exon 10 of 10)	3' UTR (NM_000461, exon 10 of 10)	-16189	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
19-PTNLD28-TUMOR_peak_20511	chr11	88918782	88918870	+	5.60910	NA	intron (NM_000372, intron 1 of 4)	intron (NM_000372, intron 1 of 4)	7786	NM_000372	7299	Hs.503555	NM_000372	HPRD:06086	TYR	ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3	tyrosinase	protein-coding
19-PTNLD28-TUMOR_peak_92518	chr7	50132788	50132887	+	5.60910	NA	promoter-TSS (NM_007009)	promoter-TSS (NM_007009)	23	NM_001159878	11055	Hs.388841	NM_007009	HPRD:18364	ZPBP	ZPBP1	zona pellucida binding protein	protein-coding
19-PTNLD28-TUMOR_peak_57085	chr2	175712316	175712648	+	5.60910	NA	promoter-TSS (NM_001206602)	promoter-TSS (NM_001206602)	-136	NM_001206602	1123	Hs.380138	NM_001822	HPRD:00319	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
19-PTNLD28-TUMOR_peak_23453	chr12	26150608	26150830	+	5.60910	NA	intron (NM_001164747, intron 2 of 5)	intron (NM_001164747, intron 2 of 5)	24031	NM_001164747	11228	Hs.696433	NM_007211	HPRD:07084	RASSF8	C12orf2|HOJ1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding
19-PTNLD28-TUMOR_peak_99287	chr8	80803735	80804150	+	5.60910	NA	Intergenic	CpG	-19970	NR_110954	101927040	Hs.350876	NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
19-PTNLD28-TUMOR_peak_38178	chr16	63323862	63323950	+	5.60910	NA	Intergenic	Intergenic	-1253167	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_67419	chr3	32451766	32452019	+	5.60910	NA	intron (NM_181472, intron 1 of 3)	intron (NM_181472, intron 1 of 3)	18729	NM_181472	112616	Hs.440494	NM_138410	HPRD:06988	CMTM7	CKLFSF7	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_98926	chr8	59762951	59763059	+	5.60910	NA	intron (NM_014729, intron 4 of 8)	MER74B|LTR|ERVL	-190601	NM_003580	8439	Hs.372000	NM_003580	HPRD:09117	NSMAF	FAN	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
19-PTNLD28-TUMOR_peak_33923	chr15	63526741	63526839	+	5.60910	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-42959	NM_001145646	83464	Hs.511703	NM_031301	HPRD:06361	APH1B	APH-1B|PRO1328|PSFL|TAAV688	APH1B gamma secretase subunit	protein-coding
19-PTNLD28-TUMOR_peak_90189	chr6	156938696	156938808	+	5.60910	NA	Intergenic	Intergenic	-160312	NM_017519	57492	Hs.291587	NM_017519	HPRD:10660	ARID1B	6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT rich interactive domain 1B (SWI1-like)	protein-coding
19-PTNLD28-TUMOR_peak_34713	chr15	78971661	78971750	+	5.60910	NA	Intergenic	Intergenic	-38118	NM_001256567	1143	Hs.624178	NM_000750	HPRD:00337	CHRNB4	-	cholinergic receptor, nicotinic, beta 4 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_4370	chr1	75118470	75118712	+	5.60910	NA	intron (NM_001002912, intron 1 of 14)	intron (NM_001002912, intron 1 of 14)	20831	NM_001002912	127254	Hs.531182	NM_001002912	HPRD:16816	ERICH3	C1orf173	glutamate-rich 3	protein-coding
19-PTNLD28-TUMOR_peak_24138	chr12	49907987	49908075	+	5.60910	NA	intron (NR_120663, intron 10 of 14)	intron (NR_120663, intron 10 of 14)	-24909	NM_012284	23416	Hs.64064	NM_012284	HPRD:05164	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding
19-PTNLD28-TUMOR_peak_5072	chr1	96198733	96198831	+	5.60910	NA	Intergenic	Intergenic	223110	NR_110622	100996635	Hs.639548	NR_110621	ENSG00000228971	LOC100996635	-	uncharacterized LOC100996635	ncRNA
19-PTNLD28-TUMOR_peak_102239	chr9	14465662	14465760	+	5.60910	NA	Intergenic	Intergenic	-66729	NM_001190738	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_62936	chr21	23595924	23596033	+	5.60910	NA	Intergenic	Intergenic	125042	NR_038400	54143	Hs.352631	NR_038400	ENSG00000184856	LINC00308	C21orf74|NCRNA00308	long intergenic non-protein coding RNA 308	ncRNA
19-PTNLD28-TUMOR_peak_45302	chr18	35589371	35589481	+	5.60910	NA	Intergenic	Intergenic	352328	NR_036202	100422857		NR_036202	miRBase:MI0015847	MIR4318	-	microRNA 4318	ncRNA
19-PTNLD28-TUMOR_peak_58680	chr2	227603922	227604238	+	5.60910	NA	intron (NM_005544, intron 1 of 1)	MARNA|DNA|TcMar-Mariner	59426	NM_005544	3667	Hs.471508	NM_005544	HPRD:00943	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_56809	chr2	168245195	168245318	+	5.60910	NA	Intergenic	MER5B|DNA|hAT-Charlie	201463	NM_001199145	129446	Hs.73680	NM_152381	HPRD:10267	XIRP2	CMYA3	xin actin-binding repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_76812	chr4	120390258	120390442	+	5.60910	NA	intron (NR_037630, intron 5 of 8)	intron (NR_037630, intron 5 of 8)	14412	NR_037630	645513	Hs.677546	NR_037630	ENSG00000245958	LOC645513	-	uncharacterized LOC645513	ncRNA
19-PTNLD28-TUMOR_peak_30718	chr14	63842599	63842768	+	5.60910	NA	non-coding (NR_104104, exon 13 of 13)	non-coding (NR_104104, exon 13 of 13)	-57090	NM_145171	122876	Hs.375028	NM_145171		GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding
19-PTNLD28-TUMOR_peak_108303	chrX	49519011	49519099	+	5.60910	NA	Intergenic	Intergenic	-58459	NM_003785	8712	Hs.128231	NM_003785	HPRD:02240	PAGE1	AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1	P antigen family, member 1 (prostate associated)	protein-coding
19-PTNLD28-TUMOR_peak_57158	chr2	177861905	177862116	+	5.60910	NA	Intergenic	Intergenic	-215412	NM_194247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
19-PTNLD28-TUMOR_peak_68176	chr3	50046404	50046506	+	5.60910	NA	intron (NM_005777, intron 6 of 20)	intron (NM_005777, intron 6 of 20)	68978	NM_001167582	10180	Hs.696735	NM_005777	HPRD:06054	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
19-PTNLD28-TUMOR_peak_93027	chr7	68580904	68580992	+	5.60910	NA	Intergenic	Intergenic	481533	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_28634	chr13	86124145	86124267	+	5.60910	NA	Intergenic	Intergenic	186468	NR_046989	100874137	Hs.742643	NR_046989	ENSG00000226317	LINC00351	-	long intergenic non-protein coding RNA 351	ncRNA
19-PTNLD28-TUMOR_peak_21645	chr11	120271636	120271729	+	5.60910	NA	intron (NM_001301084, intron 1 of 40)	intron (NM_001301084, intron 1 of 40)	15679	NM_001301084	23365	Hs.24598	NM_015313	HPRD:09207	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding
19-PTNLD28-TUMOR_peak_15708	chr10	114892479	114892674	+	5.60910	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	182567	NM_001146286	6934	Hs.593995	NM_030756	HPRD:03751	TCF7L2	TCF-4|TCF4	transcription factor 7-like 2 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_67720	chr3	42418086	42418238	+	5.60910	NA	Intergenic	Intergenic	33903	NM_144634	131375	Hs.234895	NM_144634	HPRD:14338	LYZL4	1810009N24Rik|LYC4	lysozyme-like 4	protein-coding
19-PTNLD28-TUMOR_peak_72128	chr3	161208818	161208906	+	5.60910	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-5734	NM_001080440	131149	Hs.585021	NM_001080440	ENSG00000182447	OTOL1	C1QTNF15	otolin 1	protein-coding
19-PTNLD28-TUMOR_peak_107936	chrX	37818192	37818295	+	5.60910	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	-31827	NM_012274	25763	Hs.122959	NM_012274	ENSG00000187516	HYPM	CXorf27|HIP17	huntingtin interacting protein M	protein-coding
19-PTNLD28-TUMOR_peak_86324	chr6	28522295	28522404	+	5.60910	NA	Intergenic	Intergenic	28560	NM_003996	2880	Hs.248129	NM_001509	HPRD:11941	GPX5	HEL-S-75p	glutathione peroxidase 5 (epididymal androgen-related protein)	protein-coding
19-PTNLD28-TUMOR_peak_21538	chr11	118851019	118851271	+	5.60910	NA	intron (NM_181721, intron 4 of 5)	intron (NM_181721, intron 4 of 5)	8728	NM_181721	283150	Hs.116679	NM_181721	HPRD:13551	FOXR1	FOXN5	forkhead box R1	protein-coding
19-PTNLD28-TUMOR_peak_33240	chr15	41605093	41605181	+	5.60910	NA	intron (NM_007280, intron 4 of 4)	intron (NM_007280, intron 4 of 4)	19682	NM_007280	11339	Hs.661645	NM_007280	HPRD:09352	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
19-PTNLD28-TUMOR_peak_63355	chr21	36541204	36541326	+	5.60910	NA	Intergenic	MIRc|SINE|MIR	-119670	NM_001754	861	Hs.149261	NM_001754	HPRD:01043	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB	runt-related transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_81411	chr5	104502155	104502243	+	5.60910	NA	Intergenic	L1ME3A|LINE|L1	67024	NR_000039	9366	Hs.158296	NR_000039	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_10058	chr1	216073408	216073500	+	5.60910	NA	exon (NM_206933, exon 40 of 72)	exon (NM_206933, exon 40 of 72)	332719	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_16169	chr10	127144608	127144711	+	5.60910	NA	Intergenic	Intergenic	-118281	NR_023362	100169752	Hs.652647	NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48305	chr19	24183102	24183388	+	5.60910	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-32962	NM_001278661	9534	Hs.434406	NM_004876	HPRD:05304	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
19-PTNLD28-TUMOR_peak_33281	chr15	42210035	42210139	+	5.60910	NA	intron (NM_139265, intron 4 of 5)	intron (NM_139265, intron 4 of 5)	-3528	NR_120332	101928363	Hs.680195	NR_120332		LOC101928363	-	uncharacterized LOC101928363	ncRNA
19-PTNLD28-TUMOR_peak_34296	chr15	70730404	70730551	+	5.60910	NA	Intergenic	Intergenic	264143	NM_001008224	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_83809	chr5	169189499	169189655	+	5.60910	NA	intron (NM_004946, intron 25 of 51)	intron (NM_004946, intron 25 of 51)	125326	NM_004946	1794	Hs.586174	NM_004946	HPRD:09121	DOCK2	-	dedicator of cytokinesis 2	protein-coding
19-PTNLD28-TUMOR_peak_34032	chr15	65869112	65869312	+	5.60910	NA	3' UTR (NM_016395, exon 11 of 11)	3' UTR (NM_016395, exon 11 of 11)	34274	NR_045106	81556	Hs.6686	NM_030800	HPRD:13175	VWA9	C15orf44	von Willebrand factor A domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_53034	chr2	63926099	63926203	+	5.60910	NA	Intergenic	Intergenic	109866	NM_001199112	4190	Hs.526521	NM_005917	HPRD:01100	MDH1	HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1, NAD (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_100199	chr8	117505668	117505756	+	5.60910	NA	Intergenic	Intergenic	-168415	NR_046215	100859921	Hs.552281	NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
19-PTNLD28-TUMOR_peak_107656	chrX	16622070	16622238	+	5.60910	NA	intron (NM_019857, intron 17 of 18)	intron (NM_019857, intron 17 of 18)	-46127	NM_004057	795	Hs.639	NM_004057	HPRD:02360	S100G	CABP|CABP1|CABP9K|CALB3	S100 calcium binding protein G	protein-coding
19-PTNLD28-TUMOR_peak_20873	chr11	102604141	102604229	+	5.60910	NA	Intergenic	Intergenic	-8500	NM_002424	4317	Hs.161839	NM_002424	HPRD:00385	MMP8	CLG1|HNC|MMP-8|PMNL-CL	matrix metallopeptidase 8 (neutrophil collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_21762	chr11	122763940	122764134	+	5.60910	NA	intron (NM_024806, intron 2 of 8)	MER130|Unknown?|Unknown?	10801	NM_199124	79864	Hs.164705	NM_024806	HPRD:08035	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
19-PTNLD28-TUMOR_peak_56701	chr2	163492868	163493109	+	5.60910	NA	intron (NM_033272, intron 2 of 15)	intron (NM_033272, intron 2 of 15)	-132458	NR_110258	101929570	Hs.470445	NR_110258	ENSG00000237750	LOC101929570	-	uncharacterized LOC101929570	ncRNA
19-PTNLD28-TUMOR_peak_10150	chr1	220891830	220891931	+	5.60910	NA	Intergenic	HERVE_a-int|LTR|ERV1	28252	NM_024709	79762	Hs.519839	NM_024709	HPRD:08596	C1orf115	-	chromosome 1 open reading frame 115	protein-coding
19-PTNLD28-TUMOR_peak_66423	chr3	9109169	9109257	+	5.60910	NA	intron (NM_001033117, intron 4 of 21)	intron (NM_001033117, intron 4 of 21)	-104054	NM_020165	56852	Hs.375684	NM_020165	HPRD:09242	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_80222	chr5	62159445	62159533	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	284927	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_14690	chr10	86596924	86597012	+	5.60910	NA	Intergenic	Intergenic	361693	NR_120668	101929624	Hs.588831	NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
19-PTNLD28-TUMOR_peak_38688	chr16	73371428	73371552	+	5.60910	NA	Intergenic	L2|LINE|L2	-49214	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	ncRNA
19-PTNLD28-TUMOR_peak_23608	chr12	30960321	30960541	+	5.60910	NA	Intergenic	L1M3f|LINE|L1	11816	NR_040245	100287314	Hs.355210	NR_040245	ENSG00000235884	LINC00941	-	long intergenic non-protein coding RNA 941	ncRNA
19-PTNLD28-TUMOR_peak_108010	chrX	40705020	40705147	+	5.60910	NA	Intergenic	Intergenic	-12634	NR_027761	100132831	Hs.729923	NR_027761		LOC100132831	-	A20-binding inhibitor of NF-kappaB activation 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29789	chr14	33230720	33230836	+	5.60910	NA	intron (NM_004274, intron 11 of 13)	intron (NM_004274, intron 11 of 13)	-177681	NM_001164749	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
19-PTNLD28-TUMOR_peak_81431	chr5	106240290	106240460	+	5.60910	NA	intron (NR_104671, intron 2 of 3)	L1PA3|LINE|L1	106340	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_33962	chr15	64363723	64363811	+	5.60910	NA	TTS (NM_001289108)	TTS (NM_001289108)	22440	NM_032231	84191	Hs.439548	NM_032231	HPRD:08010	FAM96A	-	family with sequence similarity 96, member A	protein-coding
19-PTNLD28-TUMOR_peak_34404	chr15	73089533	73089621	+	5.60910	NA	intron (NR_040107, intron 2 of 2)	L2c|LINE|L2	-13451	NM_031284	83440	Hs.654636	NM_031284	HPRD:12429	ADPGK	2610017G09Rik|ADP-GK	ADP-dependent glucokinase	protein-coding
19-PTNLD28-TUMOR_peak_55374	chr2	121391058	121391153	+	5.60910	NA	Intergenic	Intergenic	-163762	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_53883	chr2	86488930	86489066	+	5.60910	NA	intron (NM_001164731, intron 2 of 5)	LTR5_Hs|LTR|ERVK	62442	NM_016622	51318	Hs.433439	NM_016622	HPRD:14755	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding
19-PTNLD28-TUMOR_peak_11234	chr1	239056066	239056154	+	5.60910	NA	Intergenic	Intergenic	-406793	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_76790	chr4	119995260	119995419	+	5.60910	NA	Intergenic	L1P1|LINE|L1	-61600	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_99183	chr8	72987642	72987837	+	5.60910	NA	promoter-TSS (NM_007332)	promoter-TSS (NM_007332)	80	NM_007332	8989	Hs.716816	NM_007332	HPRD:09208	TRPA1	ANKTM1|FEPS	transient receptor potential cation channel, subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_108323	chrX	50440801	50440904	+	5.60910	NA	intron (NM_020717, intron 1 of 8)	MER124|DNA?|DNA?	116192	NR_027121	57477	Hs.420541	NM_020717	HPRD:17209	SHROOM4	SHAP	shroom family member 4	protein-coding
19-PTNLD28-TUMOR_peak_107845	chrX	25888065	25888153	+	5.60910	NA	Intergenic	Intergenic	-268351	NM_173699	286514	Hs.350683	NM_173699	HPRD:06647	MAGEB18	-	melanoma antigen family B, 18	protein-coding
19-PTNLD28-TUMOR_peak_9895	chr1	210001173	210001340	+	5.60910	NA	promoter-TSS (NM_014388)	promoter-TSS (NM_014388)	-56	NM_014388	27042	Hs.194754	NM_014388	HPRD:14535	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding
19-PTNLD28-TUMOR_peak_77737	chr4	155558640	155558728	+	5.60910	NA	Intergenic	MamSINE1|SINE|tRNA	-24782	NM_021870	2266	Hs.727584	NM_000509	HPRD:00621	FGG	-	fibrinogen gamma chain	protein-coding
19-PTNLD28-TUMOR_peak_27863	chr13	37494286	37494374	+	5.60910	NA	promoter-TSS (NM_001127217)	promoter-TSS (NM_001127217)	79	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
19-PTNLD28-TUMOR_peak_27237	chr12	132048683	132048873	+	5.60910	NA	Intergenic	Intergenic	-146854	NM_004592	6433	Hs.308171	NM_004592	HPRD:09055	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot family	protein-coding
19-PTNLD28-TUMOR_peak_61131	chr20	40163594	40163760	+	5.60910	NA	intron (NM_032221, intron 2 of 36)	intron (NM_032221, intron 2 of 36)	83456	NM_032221	84181	Hs.740645	NM_032221	HPRD:13049	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_34628	chr15	77196935	77197167	+	5.60910	NA	Intergenic	Intergenic	-20834	NM_020843	49855	Hs.458986	NM_020843	HPRD:11704	SCAPER	ZNF291|Zfp291	S-phase cyclin A-associated protein in the ER	protein-coding
19-PTNLD28-TUMOR_peak_99455	chr8	89698338	89698450	+	5.60910	NA	Intergenic	L1HS|LINE|L1	-358677	NM_005941	4325	Hs.492187	NM_005941		MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_30141	chr14	49371024	49371129	+	5.60910	NA	Intergenic	Intergenic	682058	NM_001032	6235	Hs.156367	NM_001032	HPRD:04698	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
19-PTNLD28-TUMOR_peak_17081	chr11	10372030	10372151	+	5.60910	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	42230	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
19-PTNLD28-TUMOR_peak_12074	chr10	12951986	12952074	+	5.60910	NA	intron (NM_001282658, intron 6 of 6)	intron (NM_001282658, intron 6 of 6)	76897	NR_027322	283070	Hs.600547	NR_027322		LOC283070	-	uncharacterized LOC283070	ncRNA
19-PTNLD28-TUMOR_peak_44979	chr18	23230265	23230361	+	5.60910	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-298099	NM_015461	25925	Hs.116935	NM_015461	HPRD:18350	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
19-PTNLD28-TUMOR_peak_82000	chr5	127730995	127731087	+	5.60910	NA	intron (NM_001999, intron 8 of 64)	intron (NM_001999, intron 8 of 64)	142694	NM_001999	2201	Hs.519294	NM_001999	HPRD:00416	FBN2	CCA|DA9	fibrillin 2	protein-coding
19-PTNLD28-TUMOR_peak_98732	chr8	52837760	52837875	+	5.60910	NA	Intergenic	MER61C|LTR|ERV1	-26071	NM_001286783	115294	Hs.671268	NM_052937	HPRD:08313	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_40756	chr17	26207170	26207275	+	5.60910	NA	intron (NM_001076680, intron 3 of 3)	intron (NM_001076680, intron 3 of 3)	13187	NM_001076680	201229	Hs.687951	NM_001076680	ENSG00000232859	LYRM9	C17orf108	LYR motif containing 9	protein-coding
19-PTNLD28-TUMOR_peak_103790	chr9	74219525	74219620	+	5.60910	NA	Intergenic	Intergenic	164228	NM_013390	23670	Hs.494146	NM_013390	HPRD:09317	TMEM2	-	transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_23584	chr12	29878997	29879176	+	5.60910	NA	intron (NM_175861, intron 5 of 17)	intron (NM_175861, intron 5 of 17)	57657	NM_001193451	83857	Hs.401954	NM_175861	HPRD:12472	TMTC1	OLF|TMTC1A	transmembrane and tetratricopeptide repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_98125	chr8	33390946	33391115	+	5.60910	NA	Intergenic	MER50|LTR|ERV1	-20327	NM_025115	80185	Hs.77135	NM_025115	HPRD:13390	TTI2	C8orf41|MRT39	TELO2 interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_90222	chr6	157726086	157726192	+	5.60910	NA	intron (NM_018452, intron 3 of 3)	L2a|LINE|L2	19152	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_71662	chr3	149699862	149700032	+	5.60910	NA	Intergenic	Intergenic	10881	NR_036538	646903	Hs.632559	NR_036538		LOC646903	-	uncharacterized LOC646903	ncRNA
19-PTNLD28-TUMOR_peak_13922	chr10	65626322	65626418	+	5.60910	NA	Intergenic	Intergenic	345247	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_69645	chr3	108381216	108381304	+	5.60910	NA	intron (NM_014648, intron 21 of 32)	intron (NM_014648, intron 21 of 32)	-72769	NM_020890	57650	Hs.591308	NM_020890	HPRD:11151	KIAA1524	CIP2A|p90	KIAA1524	protein-coding
19-PTNLD28-TUMOR_peak_4191	chr1	67628780	67628868	+	5.60910	NA	Intergenic	Intergenic	-3345	NM_144701	149233	Hs.677426	NM_144701	HPRD:16249	IL23R	-	interleukin 23 receptor	protein-coding
19-PTNLD28-TUMOR_peak_95588	chr7	135608530	135608688	+	5.60910	NA	Intergenic	Intergenic	53595	NM_145808	136319	Hs.602015	NM_145808	HPRD:07574	MTPN	GCDP|V-1	myotrophin	protein-coding
19-PTNLD28-TUMOR_peak_81198	chr5	94556257	94556407	+	5.60910	NA	intron (NM_024717, intron 1 of 22)	intron (NM_024717, intron 1 of 22)	63947	NM_024717	79772	Hs.591248	NM_024717	HPRD:08652	MCTP1	-	multiple C2 domains, transmembrane 1	protein-coding
19-PTNLD28-TUMOR_peak_35172	chr15	90442007	90442120	+	5.60910	NA	3' UTR (NM_001282380, exon 6 of 6)	3' UTR (NM_001282380, exon 6 of 6)	-4446	NM_005829	10239	Hs.632161	NM_005829	HPRD:03880	AP3S2	AP3S3|sigma3b	adaptor-related protein complex 3, sigma 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_18775	chr11	59570157	59570245	+	5.60910	NA	3' UTR (NM_004177, exon 11 of 11)	3' UTR (NM_004177, exon 11 of 11)	8144	NM_017840	54948	Hs.530734	NM_017840	HPRD:14743	MRPL16	L16mt|MRP-L16	mitochondrial ribosomal protein L16	protein-coding
19-PTNLD28-TUMOR_peak_82350	chr5	135406478	135406607	+	5.60910	NA	Intergenic	Intergenic	9744	NR_030583	100126299		NR_030583	ENSG00000270123	VTRNA2-1	CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886	vault RNA 2-1	ncRNA
19-PTNLD28-TUMOR_peak_77532	chr4	149848098	149848296	+	5.60910	NA	Intergenic	Intergenic	-484525	NM_001166104	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_108604	chrX	67867358	67867483	+	5.60910	NA	promoter-TSS (NM_001142503)	promoter-TSS (NM_001142503)	-91	NM_001142503	9754	Hs.95140	NM_014725	HPRD:06730	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR-related lipid transfer (START) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_88954	chr6	106783106	106783194	+	5.60910	NA	Intergenic	Intergenic	-9455	NM_001286111	9474	Hs.486063	NM_004849	HPRD:16051	ATG5	APG5|APG5-LIKE|APG5L|ASP|hAPG5	autophagy related 5	protein-coding
19-PTNLD28-TUMOR_peak_31581	chr14	87958366	87958454	+	5.60910	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	501205	NM_001201401	2581	Hs.513439	NM_000153	HPRD:06057	GALC	-	galactosylceramidase	protein-coding
19-PTNLD28-TUMOR_peak_56246	chr2	150049153	150049244	+	5.60910	NA	intron (NM_177964, intron 3 of 6)	MIRc|SINE|MIR	-137301	NM_001195685	130574	Hs.21929	NM_194317	HPRD:14676	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_34143	chr15	68155979	68156165	+	5.60910	NA	Intergenic	CpG	-23689	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_100902	chr8	129859170	129859260	+	5.60910	NA	Intergenic	MIRb|SINE|MIR	-282290	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_83536	chr5	158322624	158322731	+	5.60910	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	204111	NM_001290360	1879	Hs.573143	NM_024007	HPRD:01256	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
19-PTNLD28-TUMOR_peak_34136	chr15	67834945	67835109	+	5.60910	NA	promoter-TSS (NM_002757)	promoter-TSS (NM_002757)	6	NM_145160	5607	Hs.114198	NM_002757	HPRD:03951	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
19-PTNLD28-TUMOR_peak_72319	chr3	171046611	171046713	+	5.60910	NA	intron (NM_001161565, intron 2 of 30)	intron (NM_001161565, intron 2 of 30)	131535	NM_001161564	23043	Hs.34024	NM_015028	HPRD:18206	TNIK	-	TRAF2 and NCK interacting kinase	protein-coding
19-PTNLD28-TUMOR_peak_82666	chr5	140248528	140248616	+	5.60910	NA	5' UTR (NM_018902, exon 1 of 4)	5' UTR (NM_018902, exon 1 of 4)	1474	NM_018902	56138	Hs.199343	NM_018902	HPRD:07329	PCDHA11	CNR7|CNRN7|CNRS7|CRNR7|PCDH-ALPHA11	protocadherin alpha 11	protein-coding
19-PTNLD28-TUMOR_peak_89590	chr6	136761478	136761576	+	5.60910	NA	intron (NM_003980, intron 1 of 17)	L2c|LINE|L2	26486	NM_001198615	9053	Hs.486548	NM_003980	HPRD:04982	MAP7	E-MAP-115|EMAP115	microtubule-associated protein 7	protein-coding
19-PTNLD28-TUMOR_peak_7731	chr1	161879681	161879855	+	5.60910	NA	intron (NM_007348, intron 14 of 15)	intron (NM_007348, intron 14 of 15)	114487	NM_001297713	25903	Hs.507515	NM_015441	HPRD:14877	OLFML2B	-	olfactomedin-like 2B	protein-coding
19-PTNLD28-TUMOR_peak_5610	chr1	113286420	113286589	+	5.60910	NA	Intergenic	CpG	23315	NM_001004440	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_19691	chr11	69639974	69640062	+	5.60910	NA	Intergenic	Intergenic	-5826	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_35590	chr16	157179	157273	+	5.60910	NA	intron (NM_001243248, intron 6 of 12)	intron (NM_001243248, intron 6 of 12)	29057	NM_001015052	4350	Hs.459596	NM_002434	HPRD:06766	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine-DNA glycosylase	protein-coding
19-PTNLD28-TUMOR_peak_25870	chr12	103226795	103226897	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-8669	NR_033855	283432	Hs.382110	NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
19-PTNLD28-TUMOR_peak_69724	chr3	111410313	111410401	+	5.60910	NA	intron (NM_001185106, intron 1 of 4)	intron (NM_001185106, intron 1 of 4)	-14077	NR_046733	100874115	Hs.626740	NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65050	chr22	30583918	30584027	+	5.60910	NA	Intergenic	Intergenic	58868	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_85925	chr6	23388837	23388937	+	5.60910	NA	Intergenic	Intergenic	-737527	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_44283	chr18	2605773	2605907	+	5.60910	NA	intron (NM_006101, intron 13 of 16)	intron (NM_006101, intron 13 of 16)	34330	NM_006101	10403	Hs.414407	NM_006101	HPRD:06277	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
19-PTNLD28-TUMOR_peak_75629	chr4	72858426	72858577	+	5.60910	NA	Intergenic	MER90a|LTR|ERV1	-39020	NM_004885	10886	Hs.99231	NM_004885	HPRD:16244	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_5985	chr1	120316618	120316734	+	5.60910	NA	Intergenic	Intergenic	-5121	NM_001166107	3158	Hs.59889	NM_005518	HPRD:02580	HMGCS2	-	3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_67821	chr3	44955534	44955634	+	5.60910	NA	3' UTR (NM_003241, exon 14 of 14)	3' UTR (NM_003241, exon 14 of 14)	39486	NM_003241	7047	Hs.438265	NM_003241	HPRD:08997	TGM4	TGP|hTGP	transglutaminase 4	protein-coding
19-PTNLD28-TUMOR_peak_77178	chr4	140175546	140175684	+	5.60910	NA	Intergenic	Intergenic	25877	NM_032623	84709	Hs.710036	NM_032623	HPRD:17805	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria-localized glutamic acid-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_48860	chr19	38561416	38561514	+	5.60910	NA	intron (NM_015073, intron 2 of 21)	intron (NM_015073, intron 2 of 21)	153425	NM_001289978	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_15415	chr10	105264321	105264415	+	5.60910	NA	intron (NR_120675, intron 2 of 3)	L1MC3|LINE|L1	10633	NM_004210	9148	Hs.594708	NM_004210	HPRD:04815	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_35099	chr15	88998355	88998467	+	5.60910	NA	Intergenic	Intergenic	12222	NM_022163	26589	Hs.534261	NM_022163	HPRD:14765	MRPL46	C15orf4|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding
19-PTNLD28-TUMOR_peak_57185	chr2	178438007	178438120	+	5.60910	NA	Intergenic	Intergenic	-20539	NM_152517	150737	Hs.447659	NM_152517		TTC30B	IFT70|fleer	tetratricopeptide repeat domain 30B	protein-coding
19-PTNLD28-TUMOR_peak_27942	chr13	41070734	41070932	+	5.60910	NA	Intergenic	Intergenic	-15690	NR_024505	646982	Hs.287664	NR_024505		LINC00598	TTL	long intergenic non-protein coding RNA 598	ncRNA
19-PTNLD28-TUMOR_peak_68411	chr3	53744232	53744422	+	5.60910	NA	intron (NM_000720, intron 9 of 48)	intron (NM_000720, intron 9 of 48)	136093	NM_018397	55349	Hs.126688	NM_018397		CHDH	-	choline dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_48903	chr19	38924229	38924363	+	5.60910	NA	promoter-TSS (NM_001042723)	promoter-TSS (NM_001042723)	-44	NM_000540	6261	Hs.466664	NM_000540	HPRD:01618	RYR1	CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1 (skeletal)	protein-coding
19-PTNLD28-TUMOR_peak_44938	chr18	21481091	21481235	+	5.60910	NA	exon (NM_000227, exon 11 of 38)	exon (NM_000227, exon 11 of 38)	28179	NM_000227	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_5264	chr1	107311235	107311323	+	5.60910	NA	Intergenic	Intergenic	-287988	NM_018137	55170	Hs.26006	NM_018137	HPRD:10505	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_48362	chr19	28761146	28761234	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	457411	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_41159	chr17	35125676	35125894	+	5.60910	NA	Intergenic	Intergenic	167760	NM_024864	79922	Hs.194864	NM_024864	HPRD:08656	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_67104	chr3	22130878	22131098	+	5.60910	NA	Intergenic	LTR41|LTR|ERVL	132357	NR_046876	100874221	Hs.160616	NR_046876		ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_97279	chr8	15439649	15439737	+	5.60910	NA	intron (NM_178234, intron 1 of 9)	L1PA2|LINE|L1	42097	NM_178234	7991	Hs.426324	NM_006765	HPRD:03228	TUSC3	D8S1992|M33|MRT22|MRT7|N33|OST3A	tumor suppressor candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_59609	chr20	4100191	4100279	+	5.60910	NA	Intergenic	L2|LINE|L2	-29191	NM_175840	54498	Hs.433337	NM_175839	HPRD:11587	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
19-PTNLD28-TUMOR_peak_108008	chrX	40653688	40653790	+	5.60910	NA	Intergenic	L1PB1|LINE|L1	38710	NR_027761	100132831	Hs.729923	NR_027761		LOC100132831	-	A20-binding inhibitor of NF-kappaB activation 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_24577	chr12	54833510	54833666	+	5.60910	NA	intron (NR_120487, intron 3 of 3)	intron (NR_120487, intron 3 of 3)	20019	NR_120488	102724050	Hs.670941	NR_120486		LOC102724050	-	uncharacterized LOC102724050	ncRNA
19-PTNLD28-TUMOR_peak_2742	chr1	40828481	40828646	+	5.60910	NA	Intergenic	HAL1|LINE|L1	-10815	NM_022733	64744	Hs.15200	NM_022733	HPRD:12442	SMAP2	SMAP1L	small ArfGAP2	protein-coding
19-PTNLD28-TUMOR_peak_27438	chr13	22981139	22981341	+	5.60910	NA	Intergenic	Intergenic	196816	NR_103810	100506622	Hs.255773	NR_103810		LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
19-PTNLD28-TUMOR_peak_96675	chr7	156544161	156544249	+	5.60910	NA	intron (NM_022458, intron 9 of 16)	L2a|LINE|L2	108534	NM_001184997	140545	Hs.446194	NM_030936	HPRD:11517	RNF32	FKSG33|HSD15|LMBR2	ring finger protein 32	protein-coding
19-PTNLD28-TUMOR_peak_77828	chr4	159223316	159223490	+	5.60910	NA	Intergenic	LTR16A1|LTR|ERVL	92002	NM_018342	55314	Hs.176227	NM_018342	HPRD:07736	TMEM144	-	transmembrane protein 144	protein-coding
19-PTNLD28-TUMOR_peak_105980	chr9	125807036	125807124	+	5.60910	NA	intron (NM_012197, intron 13 of 25)	intron (NM_012197, intron 13 of 25)	11158	NM_005294	2844	Hs.722039	NM_005294		GPR21	-	G protein-coupled receptor 21	protein-coding
19-PTNLD28-TUMOR_peak_89307	chr6	122081801	122081979	+	5.60910	NA	Intergenic	L1P3|LINE|L1	325167	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_109080	chrX	106378868	106378956	+	5.60910	NA	intron (NR_033676, intron 6 of 6)	intron (NR_033676, intron 6 of 6)	-16855	NM_001171080	55285	Hs.139053	NM_018301		RBM41	-	RNA binding motif protein 41	protein-coding
19-PTNLD28-TUMOR_peak_105379	chr9	112976540	112976628	+	5.60910	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6171	NM_001012993	401546	Hs.125608	NM_001012993	HPRD:10249	C9orf152	bA470J20.2	chromosome 9 open reading frame 152	protein-coding
19-PTNLD28-TUMOR_peak_57228	chr2	179730056	179730144	+	5.60910	NA	intron (NM_173648, intron 17 of 23)	intron (NM_173648, intron 17 of 23)	-57950	NM_001267550	7273	Hs.134602	NM_003319	HPRD:01787	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding
19-PTNLD28-TUMOR_peak_75677	chr4	75134075	75134249	+	5.60910	NA	intron (NM_001144978, intron 6 of 7)	MIRc|SINE|MIR	-40025	NR_073117	255324	Hs.401237	NM_001013442	HPRD:10866	EPGN	ALGV3072|EPG|PRO9904	epithelial mitogen	protein-coding
19-PTNLD28-TUMOR_peak_25328	chr12	73054092	73054180	+	5.60910	NA	intron (NM_013381, intron 18 of 18)	LTR13A|LTR|ERVK	-386847	NR_026836	283392	Hs.363603	NM_001025457	HPRD:18764	TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55816	chr2	133142178	133142335	+	5.60910	NA	Intergenic	Intergenic	-31891	NM_001508	2863	Hs.432395	NM_001508	HPRD:04198	GPR39	-	G protein-coupled receptor 39	protein-coding
19-PTNLD28-TUMOR_peak_99595	chr8	96758574	96758873	+	5.60910	NA	intron (NR_038205, intron 2 of 2)	intron (NR_038205, intron 2 of 2)	201853	NR_036611	100500773	Hs.741582	NR_036611		LOC100500773	-	serine/arginine-rich splicing factor 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_91642	chr7	23987220	23987355	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	237342	NM_001260504	56164	Hs.309767	NM_031414	HPRD:10427	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
19-PTNLD28-TUMOR_peak_92845	chr7	64059978	64060066	+	5.60910	NA	intron (NR_077227, intron 1 of 2)	BSR/Beta|Satellite|Satellite	17034	NR_033245	641746	Hs.488363	NR_033245		LOC641746	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12301	chr10	21367756	21367864	+	5.60910	NA	intron (NM_213569, intron 2 of 6)	intron (NM_213569, intron 2 of 6)	67678	NM_001010896	387638	Hs.664110	NM_001010896	HPRD:16573	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding
19-PTNLD28-TUMOR_peak_21348	chr11	115595567	115595730	+	5.60910	NA	Intergenic	Intergenic	35270	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
19-PTNLD28-TUMOR_peak_91152	chr7	6265863	6265979	+	5.60910	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	46321	NM_004227	9265	Hs.487479	NM_004227	HPRD:05469	CYTH3	ARNO3|GRP1|PSCD3	cytohesin 3	protein-coding
19-PTNLD28-TUMOR_peak_37023	chr16	28328441	28328537	+	5.60910	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	24649	NM_001024401	388228	Hs.97837	NM_001024401	HPRD:18608	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_83452	chr5	156432309	156432397	+	5.60910	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-42087	NM_001146726	91937	Hs.334907	NM_138379	HPRD:15508	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_88433	chr6	79268914	79269002	+	5.60910	NA	Intergenic	Intergenic	-308303	NM_001010844	134728	Hs.656212	NM_001010844	HPRD:17157	IRAK1BP1	AIP70|SIMPL	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91947	chr7	33566783	33566871	+	5.60910	NA	intron (NM_198428, intron 20 of 22)	L1PA2|LINE|L1	-377696	NM_133468	168667	Hs.660998	NM_133468	HPRD:16368	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
19-PTNLD28-TUMOR_peak_67287	chr3	27799708	27799821	+	5.60910	NA	Intergenic	L2c|LINE|L2	-35558	NM_001278183	8320	Hs.591663	NM_005442	HPRD:07054	EOMES	TBR2	eomesodermin	protein-coding
19-PTNLD28-TUMOR_peak_59413	chr20	946809	946923	+	5.60910	NA	intron (NM_001029871, intron 3 of 4)	intron (NM_001029871, intron 3 of 4)	36041	NM_001040007	343637	Hs.444980	NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
19-PTNLD28-TUMOR_peak_39657	chr17	1906263	1906485	+	5.60910	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	21804	NM_178568	146760	Hs.22917	NM_178568	HPRD:11523	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_20039	chr11	74734072	74734254	+	5.60910	NA	Intergenic	Intergenic	34213	NM_006656	10825	Hs.191074	NM_006656		NEU3	SIAL3	sialidase 3 (membrane sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_57399	chr2	189061329	189061433	+	5.60910	NA	Intergenic	LTR87|LTR|ERVL?	-95015	NM_001252669	51454	Hs.470887	NM_016315		GULP1	CED-6|CED6|GULP	GULP, engulfment adaptor PTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94979	chr7	120748122	120748210	+	5.60910	NA	intron (NM_024913, intron 7 of 22)	intron (NM_024913, intron 7 of 22)	118721	NM_001105533	79974	Hs.189652	NM_024913	HPRD:08647	CPED1	C7orf58	cadherin-like and PC-esterase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59925	chr20	15856254	15856438	+	5.60910	NA	intron (NM_080676, intron 9 of 16)	intron (NM_080676, intron 9 of 16)	678842	NM_001033087	140733	Hs.661576	NM_080676	HPRD:16640	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_103489	chr9	67520853	67520964	+	5.60910	NA	Intergenic	MER21C|LTR|ERVL	-231416	NR_002817	375719	Hs.658215	NR_002817		AQP7P1	bA251O17.3	aquaporin 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_69839	chr3	112541603	112541691	+	5.60910	NA	intron (NM_001008784, intron 4 of 5)	LTR24C|LTR|ERV1	23150	NM_001199215	344807	Hs.531814	NM_001008784	HPRD:16691	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_88486	chr6	80853198	80853579	+	5.60910	NA	intron (NM_183050, intron 3 of 9)	intron (NM_183050, intron 3 of 9)	37044	NM_183050	594	Hs.654441	NM_000056	HPRD:02011	BCKDHB	E1B|dJ279A18.1	branched chain keto acid dehydrogenase E1, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_34350	chr15	71807799	71808001	+	5.60910	NA	intron (NM_024817, intron 6 of 16)	MIR3|SINE|MIR	-31641	NM_001286429	79875	Hs.387057	NM_024817	HPRD:07835	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_12520	chr10	26086960	26087059	+	5.60910	NA	Intergenic	L1PA15|LINE|L1	135630	NR_120650	101929073	Hs.409816	NR_120650		LOC101929073	-	uncharacterized LOC101929073	ncRNA
19-PTNLD28-TUMOR_peak_46966	chr19	7490040	7490180	+	5.60910	NA	intron (NM_015318, intron 1 of 20)	intron (NM_015318, intron 1 of 20)	-14464	NM_001130955	23370	Hs.465761	NM_015318	HPRD:12479	ARHGEF18	P114-RhoGEF	Rho/Rac guanine nucleotide exchange factor (GEF) 18	protein-coding
19-PTNLD28-TUMOR_peak_72422	chr3	173845281	173845444	+	5.60910	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-206776	NR_046664	100874010	Hs.624265	NR_046664		NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82906	chr5	143113333	143113474	+	5.60910	NA	Intergenic	Intergenic	53978	NR_049829	100846991		NR_049829	miRBase:MI0018176	MIR5197	-	microRNA 5197	ncRNA
19-PTNLD28-TUMOR_peak_11359	chr1	243684227	243684378	+	5.60910	NA	intron (NM_181690, intron 11 of 13)	intron (NM_181690, intron 11 of 13)	174824	NR_039824	100616343		NR_039824		MIR4677	-	microRNA 4677	ncRNA
19-PTNLD28-TUMOR_peak_107886	chrX	30924818	30925003	+	5.60910	NA	Intergenic	MER77B|LTR|ERVL	-17399	NM_152787	257397	Hs.188256	NM_152787	HPRD:06738	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_63109	chr21	32142521	32142610	+	5.60910	NA	Intergenic	Intergenic	-14869	NM_181619	337977	Hs.567837	NM_181619		KRTAP21-1	KAP21.1	keratin associated protein 21-1	protein-coding
19-PTNLD28-TUMOR_peak_20796	chr11	100434434	100434601	+	5.60910	NA	Intergenic	Intergenic	-123890	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_76869	chr4	122383965	122384083	+	5.60910	NA	Intergenic	Intergenic	-81843	NM_198179	84109	Hs.368977	NM_198179		QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
19-PTNLD28-TUMOR_peak_93811	chr7	87311778	87311926	+	5.60910	NA	intron (NM_001134406, intron 2 of 9)	Tigger1|DNA|TcMar-Tigger	30787	NM_000927	5243	Hs.489033	NM_000927	HPRD:01370	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1	ATP-binding cassette, sub-family B (MDR/TAP), member 1	protein-coding
19-PTNLD28-TUMOR_peak_32666	chr15	27016919	27017019	+	5.60910	NA	intron (NM_001278631, intron 3 of 9)	CpG	1254	NM_000814	2562	Hs.302352	NM_000814	HPRD:08844	GABRB3	ECA5	gamma-aminobutyric acid (GABA) A receptor, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_66309	chr3	5676188	5676326	+	5.60910	NA	Intergenic	L1PBa1|LINE|L1	-384317	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_102260	chr9	15416981	15417111	+	5.60910	NA	Intergenic	Intergenic	-5736	NM_001039697	6619	Hs.546299	NM_003084	HPRD:03826	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex, polypeptide 3, 50kDa	protein-coding
19-PTNLD28-TUMOR_peak_53169	chr2	65981598	65981731	+	5.60910	NA	Intergenic	Intergenic	-322008	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89202	chr6	116297741	116297956	+	5.60910	NA	intron (NM_002031, intron 2 of 7)	MIRc|SINE|MIR	-62046	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_67470	chr3	34302706	34302833	+	5.60910	NA	Intergenic	Intergenic	462706	NM_001162429	10015	Hs.475896	NM_013374	HPRD:06425	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_26199	chr12	109831690	109831778	+	5.60910	NA	intron (NM_001101421, intron 2 of 30)	intron (NM_001101421, intron 2 of 30)	5210	NM_001101421	283446	Hs.512008	NM_173597	HPRD:08227	MYO1H	-	myosin IH	protein-coding
19-PTNLD28-TUMOR_peak_107440	chrX	6451876	6451990	+	5.60910	NA	exon (NM_016379, exon 3 of 3)	exon (NM_016379, exon 3 of 3)	1226	NM_016379	51481	Hs.170076	NM_016379	HPRD:18280	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge, X-linked 3A	protein-coding
19-PTNLD28-TUMOR_peak_71647	chr3	149435315	149435406	+	5.60910	NA	Intergenic	Intergenic	-14300	NM_001168278	25937	Hs.477921	NM_015472	HPRD:09580	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_76987	chr4	126310973	126311084	+	5.60910	NA	intron (NM_024582, intron 1 of 16)	intron (NM_024582, intron 1 of 16)	73461	NM_024582	79633	Hs.563205	NM_024582	HPRD:07637	FAT4	CDHF14|CDHR11|FAT-J|FATJ|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
19-PTNLD28-TUMOR_peak_65815	chr22	43627083	43627544	+	5.60910	NA	intron (NM_173050, intron 8 of 21)	intron (NM_173050, intron 8 of 21)	-44176	NM_015140	23170	Hs.517670	NM_015140	HPRD:13782	TTLL12	dJ526I14.2	tubulin tyrosine ligase-like family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_79483	chr5	35956703	35956791	+	5.60910	NA	intron (NM_152404, intron 5 of 6)	intron (NM_152404, intron 5 of 6)	17844	NR_104630	100506406	Hs.116864	NR_104630	ENSG00000249748	LOC100506406	-	uncharacterized LOC100506406	ncRNA
19-PTNLD28-TUMOR_peak_36997	chr16	27899414	27899512	+	5.60910	NA	promoter-TSS (NM_144675)	promoter-TSS (NM_144675)	15	NM_144675	146395	Hs.91910	NM_144675	HPRD:14464	GSG1L	PRO19651	GSG1-like	protein-coding
19-PTNLD28-TUMOR_peak_90654	chr6	170438025	170438148	+	5.60910	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	133571	NR_002787	154449	Hs.447751	NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
19-PTNLD28-TUMOR_peak_67294	chr3	28242155	28242243	+	5.60910	NA	Intergenic	LTR12C|LTR|ERV1	-40925	NM_182523	152100	Hs.444724	NM_182523		CMC1	C3orf68	C-x(9)-C motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_39067	chr16	84190042	84190322	+	5.60910	NA	intron (NM_178452, intron 5 of 11)	L1MC5|LINE|L1	11317	NM_178452	123872	Hs.310164	NM_178452	HPRD:14023	DNAAF1	CILD13|LRRC50|ODA7	dynein, axonemal, assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_108325	chrX	50548453	50548613	+	5.60910	NA	intron (NM_020717, intron 1 of 8)	intron (NM_020717, intron 1 of 8)	8511	NR_027121	57477	Hs.420541	NM_020717	HPRD:17209	SHROOM4	SHAP	shroom family member 4	protein-coding
19-PTNLD28-TUMOR_peak_36659	chr16	19835989	19836164	+	5.60910	NA	intron (NM_153208, intron 8 of 9)	intron (NM_153208, intron 8 of 9)	60075	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_91327	chr7	13805634	13805825	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	220410	NM_001163150	2115	Hs.22634	NM_004956	HPRD:02765	ETV1	ER81	ets variant 1	protein-coding
19-PTNLD28-TUMOR_peak_16251	chr10	130690073	130690197	+	5.60910	NA	Intergenic	L1MC2|LINE|L1	-575319	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_4348	chr1	73033854	73034002	+	5.60910	NA	Intergenic	Intergenic	-285651	NM_173808	257194	Hs.146542	NM_173808		NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_60440	chr20	30352600	30352688	+	5.60910	NA	intron (NM_012112, intron 4 of 17)	intron (NM_012112, intron 4 of 17)	25740	NM_012112	22974	Hs.244580	NM_012112	HPRD:05802	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2, microtubule-associated	protein-coding
19-PTNLD28-TUMOR_peak_91278	chr7	10877972	10878092	+	5.60910	NA	Intergenic	Intergenic	101781	NM_002489	4697	Hs.50098	NM_002489	HPRD:04831	NDUFA4	CI-9k|CI-MLRQ|MLRQ	NDUFA4, mitochondrial complex associated	protein-coding
19-PTNLD28-TUMOR_peak_107347	chrX	1702032	1702156	+	5.60910	NA	Intergenic	Intergenic	-8392	NR_027383	8227	Hs.522572	NM_005088	HPRD:02419	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A kinase (PRKA) anchor protein 17A	protein-coding
19-PTNLD28-TUMOR_peak_29740	chr14	32306392	32306480	+	5.60910	NA	intron (NR_120408, intron 7 of 9)	AluJr|SINE|Alu	122661	NM_001201574	80224	Hs.288981	NM_025152	HPRD:16600	NUBPL	C14orf127|IND1|huInd1	nucleotide binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_55514	chr2	125781893	125782055	+	5.60910	NA	Intergenic	LTR14C|LTR|ERVK	999110	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_19359	chr11	65868330	65868466	+	5.60910	NA	intron (NM_018026, intron 1 of 23)	MLT1G1|LTR|ERVL-MaLR	30574	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21194	chr11	112382178	112382266	+	5.60910	NA	intron (NR_120559, intron 2 of 2)	intron (NR_120559, intron 2 of 2)	27154	NR_120560	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
19-PTNLD28-TUMOR_peak_103642	chr9	70895704	70895792	+	5.60910	NA	intron (NM_001291821, intron 9 of 13)	L1PA3|LINE|L1	-22035	NM_199135	286380	Hs.449471	NM_199135	HPRD:17011	FOXD4L3	FOXD4L2|FOXD6	forkhead box D4-like 3	protein-coding
19-PTNLD28-TUMOR_peak_109696	chrX	148041715	148041861	+	5.60910	NA	intron (NM_001170628, intron 9 of 17)	LTR18B|LTR|ERVL	241173	NM_001170628	2334	Hs.496911	NM_002025	HPRD:02397	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	AF4/FMR2 family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_79751	chr5	44669078	44669242	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	139735	NR_109863	100506674	Hs.575213	NR_109862		LOC100506674	-	uncharacterized LOC100506674	ncRNA
19-PTNLD28-TUMOR_peak_108635	chrX	68378416	68378688	+	5.60910	NA	Intergenic	Intergenic	6813	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_52056	chr2	33395564	33395657	+	5.60910	NA	intron (NM_000627, intron 1 of 29)	L1PA3|LINE|L1	35946	NM_001166266	4052	Hs.619315	NM_000627	HPRD:01039	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_1634	chr1	26238748	26238836	+	5.60910	NA	Intergenic	L1MC4a|LINE|L1	-5424	NM_203399	3925	Hs.209983	NM_005563	HPRD:01047	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
19-PTNLD28-TUMOR_peak_105207	chr9	110310756	110310940	+	5.60910	NA	Intergenic	Intergenic	-58801	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel-like factor 4 (gut)	protein-coding
19-PTNLD28-TUMOR_peak_30551	chr14	58829660	58829787	+	5.60910	NA	intron (NM_002892, intron 19 of 23)	MER91B|DNA|hAT-Tip100	-32921	NM_207377	387990	Hs.592307	NM_207377	HPRD:18275	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding
19-PTNLD28-TUMOR_peak_67754	chr3	43042895	43043026	+	5.60910	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	22201	NM_001129908	729085	Hs.729533	NM_001129908	ENSG00000144649	FAM198A	C3orf41	family with sequence similarity 198, member A	protein-coding
19-PTNLD28-TUMOR_peak_89089	chr6	111021677	111021796	+	5.60910	NA	intron (NM_001300964, intron 2 of 12)	intron (NM_001300964, intron 2 of 12)	-114088	NM_001287215	262	Hs.159118	NM_001634	HPRD:01622	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_13602	chr10	52122362	52122455	+	5.60910	NA	intron (NM_147156, intron 6 of 10)	L1MEd|LINE|L1	-114038	NM_001143974	56624	Hs.512645	NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2	protein-coding
19-PTNLD28-TUMOR_peak_56131	chr2	144487808	144488021	+	5.60910	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-206720	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
19-PTNLD28-TUMOR_peak_72783	chr3	184158078	184158176	+	5.60910	NA	Intergenic	MER102a|DNA|hAT-Charlie	60266	NM_003741	8646	Hs.166186	NM_003741	HPRD:04592	CHRD	-	chordin	protein-coding
19-PTNLD28-TUMOR_peak_102521	chr9	24699062	24699150	+	5.60910	NA	Intergenic	Intergenic	-153432	NM_001271706	100129669	Hs.573530	NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
19-PTNLD28-TUMOR_peak_86237	chr6	27516340	27516445	+	5.60910	NA	Intergenic	Intergenic	-75495	NM_007149	7738	Hs.158174	NM_007149	HPRD:03785	ZNF184	-	zinc finger protein 184	protein-coding
19-PTNLD28-TUMOR_peak_94864	chr7	112150465	112150554	+	5.60910	NA	Intergenic	Intergenic	29443	NM_182597	286006	Hs.396189	NM_182597	HPRD:08258	LSMEM1	C7orf53	leucine-rich single-pass membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91867	chr7	30928475	30928627	+	5.60910	NA	intron (NM_032222, intron 17 of 17)	intron (NM_032222, intron 17 of 17)	-22864	NM_198098	358	Hs.76152	NM_000385	HPRD:00140	AQP1	AQP-CHIP|CHIP28|CO	aquaporin 1 (Colton blood group)	protein-coding
19-PTNLD28-TUMOR_peak_99516	chr8	94712890	94712978	+	5.60910	NA	promoter-TSS (NR_033858)	promoter-TSS (NR_033858)	199	NM_001283034	137392	Hs.125038	NM_145269	HPRD:14061	FAM92A1	-	family with sequence similarity 92, member A1	protein-coding
19-PTNLD28-TUMOR_peak_76991	chr4	127629962	127630067	+	5.60910	NA	Intergenic	Intergenic	-924073	NM_015693	27152	Hs.391481	NM_015693		INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
19-PTNLD28-TUMOR_peak_88104	chr6	56157534	56157622	+	5.60910	NA	intron (NR_046940, intron 3 of 5)	intron (NR_046940, intron 3 of 5)	-45200	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_48259	chr19	22757923	22758011	+	5.60910	NA	Intergenic	LTR5_Hs|LTR|ERVK	-21092	NR_033899	440518	Hs.568223	NR_033899	ENSG00000269332	GOLGA2P9	-	golgin A2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_87202	chr6	37425096	37425202	+	5.60910	NA	intron (NM_015050, intron 8 of 23)	intron (NM_015050, intron 8 of 23)	24242	NM_015050	23070	Hs.520102	NM_015050	HPRD:08305	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_51199	chr2	12626796	12627052	+	5.60910	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-230074	NR_027303	28951	Hs.467751	NM_021643	HPRD:18224	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_20728	chr11	95896403	95896491	+	5.60910	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-178155	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_98938	chr8	60688500	60688689	+	5.60910	NA	Intergenic	Intergenic	505360	NM_004056	767	Hs.654388	NM_004056		CA8	CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase VIII	protein-coding
19-PTNLD28-TUMOR_peak_39033	chr16	83671282	83671370	+	5.60910	NA	intron (NM_001220488, intron 9 of 14)	L1HS|LINE|L1	129375	NR_036147	100422853		NR_036147		MIR3182	-	microRNA 3182	ncRNA
19-PTNLD28-TUMOR_peak_30370	chr14	54413506	54413658	+	5.60910	NA	Intergenic	CpG	1620	NR_049843	100847076		NR_049843	miRBase:MI0019135	MIR5580	-	microRNA 5580	ncRNA
19-PTNLD28-TUMOR_peak_69280	chr3	88919035	88919151	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-237581	NM_005233	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_105244	chr9	111119289	111119433	+	5.60910	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	498914	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_79222	chr5	21775130	21775224	+	5.60910	NA	intron (NM_004061, intron 11 of 14)	MER5A|DNA|hAT-Charlie	315588	NR_027027	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_28670	chr13	92789926	92790019	+	5.60910	NA	intron (NM_004466, intron 6 of 7)	AluJb|SINE|Alu	214488	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_66955	chr3	16293986	16294077	+	5.60910	NA	Intergenic	Intergenic	12465	NM_001047434	285381	Hs.388087	NM_206831		DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
19-PTNLD28-TUMOR_peak_105062	chr9	104364642	104364730	+	5.60910	NA	intron (NM_133445, intron 6 of 8)	intron (NM_133445, intron 6 of 8)	-7403	NM_147180	5535	Hs.151167	NM_147180	HPRD:10164	PPP3R2	PPP3RL	protein phosphatase 3, regulatory subunit B, beta	protein-coding
19-PTNLD28-TUMOR_peak_59616	chr20	4173856	4174005	+	5.60910	NA	intron (NR_033917, intron 1 of 2)	intron (NR_033917, intron 1 of 2)	193	NR_033917	728228	Hs.636379	NR_033917	ENSG00000230176	LINC01433	-	long intergenic non-protein coding RNA 1433	ncRNA
19-PTNLD28-TUMOR_peak_3295	chr1	47728637	47728774	+	5.60910	NA	exon (NM_001048166, exon 15 of 17)	exon (NM_001048166, exon 15 of 17)	-30698	NM_001290403	6886	Hs.705618	NM_003189	HPRD:01753	TAL1	SCL|TCL5|bHLHa17|tal-1	T-cell acute lymphocytic leukemia 1	protein-coding
19-PTNLD28-TUMOR_peak_107514	chrX	9842649	9842816	+	5.60910	NA	intron (NM_001649, intron 2 of 9)	HY3|scRNA|scRNA	88236	NM_001649	357	Hs.567236	NM_001649	HPRD:02113	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
19-PTNLD28-TUMOR_peak_33066	chr15	36720426	36720662	+	5.60910	NA	Intergenic	Intergenic	-151260	NM_001290233	84529	Hs.48348	NM_032499	HPRD:13650	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding
19-PTNLD28-TUMOR_peak_85578	chr6	15148866	15148960	+	5.60910	NA	Intergenic	Intergenic	-97293	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_31769	chr14	93418411	93418499	+	5.60910	NA	intron (NM_001142593, intron 8 of 10)	intron (NM_001142593, intron 8 of 10)	29010	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_15052	chr10	98155848	98155967	+	5.60910	NA	intron (NM_012465, intron 11 of 20)	intron (NM_012465, intron 11 of 20)	-36785	NM_033207	93377	Hs.12449	NM_033207	HPRD:15521	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
19-PTNLD28-TUMOR_peak_83520	chr5	157857280	157857462	+	5.60910	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-20590	NR_109888	101927697	Hs.483960	NR_109888		LOC101927697	-	uncharacterized LOC101927697	ncRNA
19-PTNLD28-TUMOR_peak_75760	chr4	77406759	77406847	+	5.60910	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	50550	NM_020859	57619	Hs.702168	NM_020859	HPRD:07053	SHROOM3	APXL3|SHRM|ShrmL	shroom family member 3	protein-coding
19-PTNLD28-TUMOR_peak_52961	chr2	61482897	61482985	+	5.60910	NA	intron (NM_014709, intron 48 of 79)	Tigger7|DNA|TcMar-Tigger	78386	NM_152392	130872	Hs.655602	NM_152392	HPRD:16479	AHSA2	Hch1	AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_16405	chr10	135310995	135311083	+	5.60910	NA	Intergenic	LTR13|LTR|ERVK	-29828	NM_000773	1571	Hs.12907	NM_000773	HPRD:11813	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450, family 2, subfamily E, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_63429	chr21	38176468	38176688	+	5.60910	NA	intron (NM_001242785, intron 7 of 11)	intron (NM_001242785, intron 7 of 11)	104587	NM_009586	6493	Hs.146186	NM_005069	HPRD:02935	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded family bHLH transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_38649	chr16	72158916	72159019	+	5.60910	NA	intron (NM_031293, intron 16 of 20)	intron (NM_031293, intron 16 of 20)	-30752	NM_001142318	54957	Hs.134406	NM_017853	HPRD:11655	TXNL4B	DLP|Dim2	thioredoxin-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_56244	chr2	150016917	150017005	+	5.60910	NA	intron (NM_177964, intron 2 of 6)	intron (NM_177964, intron 2 of 6)	121980	NM_177964	130576	Hs.357567	NM_177964	HPRD:14045	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
19-PTNLD28-TUMOR_peak_93640	chr7	80171919	80172071	+	5.60910	NA	Intergenic	Intergenic	-30753	NM_001102386	346562	Hs.335049	NM_001102386	ENSG00000214415	GNAT3	GDCA	guanine nucleotide binding protein, alpha transducing 3	protein-coding
19-PTNLD28-TUMOR_peak_57513	chr2	192120685	192120848	+	5.60910	NA	intron (NM_001130158, intron 1 of 30)	intron (NM_001130158, intron 1 of 30)	10512	NM_001161819	4430	Hs.439620	NM_012223	HPRD:08407	MYO1B	myr1	myosin IB	protein-coding
19-PTNLD28-TUMOR_peak_84676	chr6	939953	940041	+	5.60910	NA	Intergenic	Intergenic	71499	NR_110853	101927691	Hs.552556	NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
19-PTNLD28-TUMOR_peak_94992	chr7	122330078	122330231	+	5.60910	NA	intron (NM_001009571, intron 2 of 27)	HERVL18-int|LTR|ERVL	9054	NM_139175	168433	Hs.126730	NM_139175	HPRD:11505	RNF133	-	ring finger protein 133	protein-coding
19-PTNLD28-TUMOR_peak_75483	chr4	59615453	59615580	+	5.60910	NA	Intergenic	LTR22A|LTR|ERVK	-1638965	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_104185	chr9	86264170	86264258	+	5.60910	NA	Intergenic	Intergenic	26250	NR_046421	414328	Hs.530261	NM_001001551		IDNK	C9orf103|bA522I20.2	idnK, gluconokinase homolog (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_57958	chr2	205260358	205260484	+	5.60910	NA	Intergenic	L2c|LINE|L2	-150095	NM_152526	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_78869	chr5	10233729	10233817	+	5.60910	NA	intron (NR_047668, intron 3 of 3)	intron (NR_047668, intron 3 of 3)	16248	NR_047669	134145	Hs.481569	NM_199133		FAM173B	JS-2	family with sequence similarity 173, member B	protein-coding
19-PTNLD28-TUMOR_peak_108930	chrX	95729137	95729225	+	5.60910	NA	Intergenic	Intergenic	-136280	NR_003539	643486	Hs.590806	NR_003539	ENSG00000271209	LOC643486	-	bromodomain, testis-specific pseudogene	pseudo
19-PTNLD28-TUMOR_peak_88200	chr6	65100134	65100273	+	5.60910	NA	intron (NM_001292009, intron 28 of 43)	L1PA2|LINE|L1	743772	NM_015153	23469	Hs.348921	NM_015153	HPRD:08477	PHF3	-	PHD finger protein 3	protein-coding
19-PTNLD28-TUMOR_peak_25016	chr12	65248339	65248429	+	5.60910	NA	intron (NM_015279, intron 8 of 11)	AluY|SINE|Alu	-29170	NR_033988	400046	Hs.591032	NR_033988	ENSG00000255693	FLJ41278	-	uncharacterized LOC400046	ncRNA
19-PTNLD28-TUMOR_peak_63968	chr21	45959704	45959822	+	5.60910	NA	exon (NM_198691, exon 1 of 1)	exon (NM_198691, exon 1 of 1)	315	NM_198691	386677	Hs.688631	NM_198691	HPRD:11184	KRTAP10-1	KAP10.1|KAP18-1|KAP18.1|KRTAP10.1|KRTAP18-1|KRTAP18.1	keratin associated protein 10-1	protein-coding
19-PTNLD28-TUMOR_peak_45395	chr18	41659719	41659856	+	5.60910	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	451875	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
19-PTNLD28-TUMOR_peak_34941	chr15	84453883	84453971	+	5.60910	NA	intron (NM_001301110, intron 4 of 29)	MER5A1|DNA|hAT-Charlie	131089	NM_001301110	57188	Hs.459162	NM_207517	HPRD:12426	ADAMTSL3	ADAMTSL-3	ADAMTS-like 3	protein-coding
19-PTNLD28-TUMOR_peak_20142	chr11	76236206	76236294	+	5.60910	NA	intron (NM_001300944, intron 13 of 20)	intron (NM_001300944, intron 13 of 20)	80181	NM_001300942	56946	Hs.352588	NM_020193	HPRD:10544	C11orf30	EMSY	chromosome 11 open reading frame 30	protein-coding
19-PTNLD28-TUMOR_peak_70149	chr3	122216422	122216520	+	5.60910	NA	intron (NR_026698, intron 1 of 14)	L1MB7|LINE|L1	17315	NM_002264	3836	Hs.161008	NM_002264	HPRD:02819	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin alpha 1 (importin alpha 5)	protein-coding
19-PTNLD28-TUMOR_peak_72639	chr3	181851688	181851776	+	5.60910	NA	Intergenic	Intergenic	181580	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA
19-PTNLD28-TUMOR_peak_83273	chr5	150929796	150929927	+	5.60910	NA	intron (NM_001447, intron 7 of 22)	MIR3|SINE|MIR	18644	NM_001447	2196	Hs.591255	NM_001447	HPRD:05041	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT atypical cadherin 2	protein-coding
19-PTNLD28-TUMOR_peak_74904	chr4	33073274	33073443	+	5.60910	NA	Intergenic	MLT1E1A-int|LTR|ERVL-MaLR	2351321	NM_032457	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_54387	chr2	98756754	98756968	+	5.60910	NA	intron (NM_144992, intron 7 of 27)	intron (NM_144992, intron 7 of 27)	53266	NM_144992	200403	Hs.269977	NM_144992	HPRD:14510	VWA3B	-	von Willebrand factor A domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_54801	chr2	109999575	109999728	+	5.60910	NA	intron (NM_001099289, intron 3 of 9)	intron (NM_001099289, intron 3 of 9)	-69570	NR_036224	100423027		NR_036224	miRBase:MI0015870	MIR4266	-	microRNA 4266	ncRNA
19-PTNLD28-TUMOR_peak_59444	chr20	1486179	1486309	+	5.60910	NA	Intergenic	Intergenic	-14011	NM_001122962	284759	Hs.721685	NM_001122962	ENSG00000196209	SIRPB2	PTPN1L|PTPNS1L3|dJ776F14.2	signal-regulatory protein beta 2	protein-coding
19-PTNLD28-TUMOR_peak_77885	chr4	162074360	162074453	+	5.60910	NA	Intergenic	Intergenic	1010780	NM_020116	56884	Hs.32452	NM_020116	HPRD:10998	FSTL5	-	follistatin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_97141	chr8	10916909	10916997	+	5.60910	NA	intron (NM_173683, intron 1 of 2)	CpG	-24141	NR_030328	693183		NR_030328		MIR598	MIRN598|hsa-mir-598	microRNA 598	ncRNA
19-PTNLD28-TUMOR_peak_28740	chr13	96984190	96984372	+	5.60910	NA	intron (NM_153456, intron 1 of 1)	L1PA4|LINE|L1	241188	NM_153456	266722	Hs.171001	NM_153456		HS6ST3	HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_67055	chr3	19017928	19018054	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-172026	NM_144633	131096	Hs.475656	NM_144633	HPRD:10006	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
19-PTNLD28-TUMOR_peak_69554	chr3	106682386	106682479	+	5.60910	NA	Intergenic	Intergenic	277053	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_72731	chr3	183828237	183828325	+	5.60910	NA	Intergenic	LTR8|LTR|ERV1	10314	NM_198314	285242	Hs.449179	NM_182589	HPRD:17122	HTR3E	5-HT3-E|5-HT3E|5-HT3c1	5-hydroxytryptamine (serotonin) receptor 3E, ionotropic	protein-coding
19-PTNLD28-TUMOR_peak_9900	chr1	210069205	210069362	+	5.60910	NA	Intergenic	LTR39|LTR|ERV1	-42236	NM_153262	255928	Hs.658866	NM_153262	HPRD:11617	SYT14	SCAR11|sytXIV	synaptotagmin XIV	protein-coding
19-PTNLD28-TUMOR_peak_88630	chr6	87279751	87279843	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-367227	NM_000865	3354	Hs.1611	NM_000865	HPRD:01635	HTR1E	5-HT1E	5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_89920	chr6	149628253	149628341	+	5.60910	NA	intron (NM_001292035, intron 1 of 5)	intron (NM_001292035, intron 1 of 5)	-10817	NM_001292034	23118	Hs.269775	NM_015093	HPRD:05483	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_74884	chr4	28517288	28517393	+	5.60910	NA	Intergenic	SVA_D|Other|Other	-303864	NR_036237	100422937		NR_036237		MIR4275	-	microRNA 4275	ncRNA
19-PTNLD28-TUMOR_peak_92505	chr7	49666014	49666376	+	5.60910	NA	Intergenic	LTR51|LTR|ERV1	-147062	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_30610	chr14	60418986	60419112	+	5.60910	NA	intron (NR_075071, intron 8 of 32)	L1PA2|LINE|L1	32618	NR_075071	341883	Hs.666245	NM_198499	HPRD:13525	LRRC9	-	leucine rich repeat containing 9	pseudo
19-PTNLD28-TUMOR_peak_79402	chr5	33526968	33527190	+	5.60910	NA	TTS (NM_030955)	TTS (NM_030955)	86197	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_103864	chr9	75758958	75759057	+	5.60910	NA	Intergenic	Intergenic	-7774	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_28408	chr13	66839261	66839503	+	5.60910	NA	Intergenic	Intergenic	-559919	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_97321	chr8	17113569	17113657	+	5.60910	NA	intron (NM_001145152, intron 1 of 10)	L1MA4|LINE|L1	9212	NM_152415	137492	Hs.343873	NM_152415	HPRD:13410	VPS37A	HCRP1|PQBP2|SPG53	vacuolar protein sorting 37 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_52147	chr2	37677303	37677491	+	5.60910	NA	Intergenic	Intergenic	105644	NM_012413	25797	Hs.79033	NM_012413	HPRD:06140	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_81228	chr5	95477711	95477810	+	5.60910	NA	Intergenic	Intergenic	62918	NR_030309	693168		NR_030309	miRBase:MI0003590	MIR583	MIRN583|hsa-mir-583	microRNA 583	ncRNA
19-PTNLD28-TUMOR_peak_102656	chr9	32783400	32783488	+	5.60910	NA	promoter-TSS (NM_212558)	promoter-TSS (NM_212558)	-53	NM_212558	401498	Hs.522063	NM_212558		TMEM215	-	transmembrane protein 215	protein-coding
19-PTNLD28-TUMOR_peak_36494	chr16	15534048	15534225	+	5.60910	NA	intron (NM_033201, intron 1 of 5)	intron (NM_033201, intron 1 of 5)	5811	NM_033201	89927	Hs.401798	NM_033201	HPRD:12382	C16orf45	-	chromosome 16 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_89813	chr6	144803380	144803468	+	5.60910	NA	exon (NM_007124, exon 26 of 74)	exon (NM_007124, exon 26 of 74)	190551	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_71781	chr3	152184647	152184735	+	5.60910	NA	Intergenic	Intergenic	-125912	NM_001123228	645843	Hs.632562	NM_001123228	ENSG00000221962	TMEM14E	-	transmembrane protein 14E	protein-coding
19-PTNLD28-TUMOR_peak_88913	chr6	104123801	104123916	+	5.60910	NA	Intergenic	Intergenic	1183936	NR_104424	57531	Hs.434340	NM_020771	HPRD:17086	HACE1	-	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_53682	chr2	80686182	80686433	+	5.60910	NA	intron (NM_001282597, intron 9 of 18)	Tigger3c|DNA|TcMar-Tigger	145803	NM_001282599	1496	Hs.167368	NM_004389	HPRD:00228	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin (cadherin-associated protein), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_108279	chrX	48994006	48994111	+	5.60910	NA	Intergenic	MER83B|LTR|ERV1	-13907	NM_015698	27238	Hs.503666	NM_015698		GPKOW	GPATC5|GPATCH5|Spp2|T54	G patch domain and KOW motifs	protein-coding
19-PTNLD28-TUMOR_peak_29130	chr13	113514174	113514262	+	5.60910	NA	intron (NM_032189, intron 23 of 28)	intron (NM_032189, intron 23 of 28)	-105173	NR_046661	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109790	chrX	150849478	150849566	+	5.60910	NA	Intergenic	Intergenic	-14208	NM_024082	79057	Hs.592236	NM_024082	HPRD:06742	PRRG3	PRGP3|TMG3	proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_30626	chr14	61104502	61104785	+	5.60910	NA	Intergenic	CpG	11512	NM_005982	6495	Hs.633506	NM_005982		SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_25067	chr12	66442920	66443008	+	5.60910	NA	Intergenic	Intergenic	-25458	NR_106722	102464827		NR_106722		MIR6074	hsa-mir-6074	microRNA 6074	ncRNA
19-PTNLD28-TUMOR_peak_31924	chr14	97207755	97207949	+	5.60910	NA	Intergenic	CpG	-55832	NM_003384	7443	Hs.422662	NM_003384	HPRD:03701	VRK1	PCH1|PCH1A	vaccinia related kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_79087	chr5	16169934	16170112	+	5.60910	NA	intron (NM_001102562, intron 2 of 3)	intron (NM_001102562, intron 2 of 3)	9874	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_11749	chr10	4020401	4020668	+	5.60910	NA	Intergenic	Intergenic	-12818	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
19-PTNLD28-TUMOR_peak_108976	chrX	100805454	100805667	+	5.60910	NA	promoter-TSS (NM_016608)	promoter-TSS (NM_016608)	46	NM_016608	51309	Hs.9728	NM_016608	HPRD:02292	ARMCX1	ALEX1|GASP7	armadillo repeat containing, X-linked 1	protein-coding
19-PTNLD28-TUMOR_peak_10860	chr1	232027689	232027814	+	5.60910	NA	intron (NM_001164541, intron 9 of 9)	intron (NM_001164541, intron 9 of 9)	-73488	NR_002227	27184	Hs.720568	NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_23802	chr12	41480672	41480760	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-101534	NM_001164595	29951	Hs.380044	NM_013377	HPRD:15116	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
19-PTNLD28-TUMOR_peak_55674	chr2	130763733	130763913	+	5.60910	NA	Intergenic	Intergenic	-25778	NR_036537	100131320	Hs.535586	NR_036537	ENSG00000225449	RAB6C-AS1	-	RAB6C antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_59997	chr20	17722014	17722125	+	5.60910	NA	Intergenic	LTR16C|LTR|ERVL	41476	NM_001014977	140836	Hs.115366	NM_178477	HPRD:12759	BANF2	BAF-L|BAF2|BAFL|C20orf179	barrier to autointegration factor 2	protein-coding
19-PTNLD28-TUMOR_peak_79607	chr5	39376487	39376575	+	5.60910	NA	intron (NM_001244871, intron 11 of 13)	intron (NM_001244871, intron 11 of 13)	-11876	NM_001737	735	Hs.654443	NM_001737	HPRD:00408	C9	ARMD15|C9D	complement component 9	protein-coding
19-PTNLD28-TUMOR_peak_48260	chr19	22764660	22764754	+	5.60910	NA	Intergenic	Intergenic	-14352	NR_033899	440518	Hs.568223	NR_033899	ENSG00000269332	GOLGA2P9	-	golgin A2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_59665	chr20	5484787	5484939	+	5.60910	NA	intron (NR_015406, intron 1 of 1)	intron (NR_015406, intron 1 of 1)	379	NR_015406	149837	Hs.123609	NR_015406		LINC00654	-	long intergenic non-protein coding RNA 654	ncRNA
19-PTNLD28-TUMOR_peak_92832	chr7	63761146	63761313	+	5.60910	NA	Intergenic	BSR/Beta|Satellite|Satellite	-13022	NM_001294255	728927	Hs.386162	NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
19-PTNLD28-TUMOR_peak_82088	chr5	131646165	131646394	+	5.60910	NA	TTS (NR_110997)	TTS (NR_110997)	16134	NM_003059	6583	Hs.310591	NM_003059	HPRD:09171	SLC22A4	OCTN1	solute carrier family 22 (organic cation/zwitterion transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_15476	chr10	106006789	106006881	+	5.60910	NA	Intergenic	LTR8A|LTR|ERV1	-7117	NM_001191003	9446	Hs.190028	NM_004832	HPRD:10401	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
19-PTNLD28-TUMOR_peak_11633	chr10	1156235	1156422	+	5.60910	NA	intron (NM_014023, intron 11 of 13)	intron (NM_014023, intron 11 of 13)	-49380	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
19-PTNLD28-TUMOR_peak_93624	chr7	79657086	79657336	+	5.60910	NA	Intergenic	Intergenic	-106929	NM_002069	2770	Hs.134587	NM_002069	HPRD:00756	GNAI1	Gi	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_31716	chr14	92355989	92356077	+	5.60910	NA	intron (NM_006329, intron 6 of 10)	intron (NM_006329, intron 6 of 10)	-22153	NM_001128596	123036	Hs.510262	NM_152332	HPRD:11375	TC2N	C14orf47|C2CD1|MTAC2D1|Tac2-N	tandem C2 domains, nuclear	protein-coding
19-PTNLD28-TUMOR_peak_108337	chrX	51138924	51139037	+	5.60910	NA	Intergenic	CpG	-10787	NM_203407	340602	Hs.97053	NM_203407	HPRD:14176	CXorf67	-	chromosome X open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_27140	chr12	128792509	128792683	+	5.60910	NA	intron (NM_001136103, intron 1 of 8)	MLT1K|LTR|ERVL-MaLR	13959	NR_037406	100500817		NR_037406		MIR3612	-	microRNA 3612	ncRNA
19-PTNLD28-TUMOR_peak_85227	chr6	8743729	8743885	+	5.60910	NA	intron (NR_038980, intron 3 of 4)	Tigger6a|DNA|TcMar-Tigger	91365	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
19-PTNLD28-TUMOR_peak_99485	chr8	91997530	91997625	+	5.60910	NA	promoter-TSS (NM_001190972)	promoter-TSS (NM_001190972)	-92	NM_001190972	100127983	Hs.733266	NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding
19-PTNLD28-TUMOR_peak_92496	chr7	49041300	49041388	+	5.60910	NA	Intergenic	LTR41|LTR|ERVL	77187	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_21504	chr11	118443965	118444115	+	5.60910	NA	intron (NM_001142281, intron 1 of 8)	intron (NM_001142281, intron 1 of 8)	938	NM_001655	372	Hs.33642	NM_001655	HPRD:02893	ARCN1	COPD	archain 1	protein-coding
19-PTNLD28-TUMOR_peak_44312	chr18	3129400	3129510	+	5.60910	NA	exon (NM_003803, exon 18 of 38)	exon (NM_003803, exon 18 of 38)	90651	NM_019856	8736	Hs.464469	NM_003803	HPRD:04618	MYOM1	SKELEMIN	myomesin 1	protein-coding
19-PTNLD28-TUMOR_peak_11224	chr1	238757243	238757344	+	5.60910	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-107976	NR_015407	339535	Hs.532047	NR_015407	ENSG00000215808	LINC01139	-	long intergenic non-protein coding RNA 1139	ncRNA
19-PTNLD28-TUMOR_peak_97070	chr8	8792604	8792782	+	5.60910	NA	Intergenic	ALINE|LINE|RTE	-41562	NM_004225	9258	Hs.379414	NM_004225	HPRD:12010	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding
19-PTNLD28-TUMOR_peak_31476	chr14	78477153	78477316	+	5.60910	NA	Intergenic	Intergenic	-159482	NR_073547	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_25442	chr12	80580559	80580711	+	5.60910	NA	Intergenic	Intergenic	-22598	NM_173591	283310	Hs.723594	NM_173591	HPRD:08815	OTOGL	C12orf64|DFNB84B	otogelin-like	protein-coding
19-PTNLD28-TUMOR_peak_98978	chr8	62381468	62381566	+	5.60910	NA	intron (NM_173519, intron 5 of 5)	intron (NM_173519, intron 5 of 5)	180992	NM_173519	157807	Hs.591874	NM_173519	HPRD:14581	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding
19-PTNLD28-TUMOR_peak_80056	chr5	57272393	57272637	+	5.60910	NA	Intergenic	LTR67B|LTR|ERVL	-77526	NR_109900	101928539	Hs.639385	NR_109900	ENSG00000249584	LOC101928539	-	uncharacterized LOC101928539	ncRNA
19-PTNLD28-TUMOR_peak_46778	chr19	4212647	4212755	+	5.60910	NA	intron (NM_133475, intron 15 of 21)	intron (NM_133475, intron 15 of 21)	-16839	NM_005755	10148	Hs.501452	NM_005755	HPRD:12051	EBI3	IL-27B|IL27B	Epstein-Barr virus induced 3	protein-coding
19-PTNLD28-TUMOR_peak_57880	chr2	203400688	203400870	+	5.60910	NA	intron (NM_001204, intron 9 of 12)	SVA_F|Other|Other	-99122	NM_173511	150864	Hs.471130	NM_173511	HPRD:12445	FAM117B	ALS2CR13	family with sequence similarity 117, member B	protein-coding
19-PTNLD28-TUMOR_peak_31221	chr14	73993349	73993550	+	5.60910	NA	intron (NM_203309, intron 1 of 16)	L1M1|LINE|L1	-10479	NM_001037161	641371	Hs.446685	NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_104163	chr9	85857195	85857283	+	5.60910	NA	TTS (NM_001244959)	TTS (NM_001244959)	24963	NM_001244962	257019	Hs.127535	NM_174938	HPRD:07402	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_108667	chrX	70349094	70349230	+	5.60910	NA	intron (NM_005120, intron 25 of 44)	intron (NM_005120, intron 25 of 44)	10756	NM_005120	9968	Hs.409226	NM_005120	HPRD:02176	MED12	ARC240|CAGH45|FGS1|HOPA|MED12S|OHDOX|OKS|OPA1|TNRC11|TRAP230	mediator complex subunit 12	protein-coding
19-PTNLD28-TUMOR_peak_67823	chr3	44966335	44966423	+	5.60910	NA	3' UTR (NM_016598, exon 8 of 8)	3' UTR (NM_016598, exon 8 of 8)	50281	NM_003241	7047	Hs.438265	NM_003241	HPRD:08997	TGM4	TGP|hTGP	transglutaminase 4	protein-coding
19-PTNLD28-TUMOR_peak_25213	chr12	70042378	70042466	+	5.60910	NA	intron (NM_001282614, intron 9 of 9)	intron (NM_001282614, intron 9 of 9)	-37480	NM_201550	376132	Hs.448708	NM_201550	HPRD:17449	LRRC10	HRLRRP|LRRC10A	leucine rich repeat containing 10	protein-coding
19-PTNLD28-TUMOR_peak_14249	chr10	73656292	73656387	+	5.60910	NA	Intergenic	Intergenic	-45257	NM_001042466	5660	Hs.523004	NM_002778	HPRD:01460	PSAP	GLBA|SAP1	prosaposin	protein-coding
19-PTNLD28-TUMOR_peak_13312	chr10	45898813	45898901	+	5.60910	NA	intron (NM_001256153, intron 3 of 13)	L1ME3B|LINE|L1	29233	NM_000698	240	Hs.89499	NM_000698	HPRD:01065	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
19-PTNLD28-TUMOR_peak_88385	chr6	75940345	75940438	+	5.60910	NA	Intergenic	Intergenic	13253	NM_001865	1347	Hs.70312	NM_001865	HPRD:00482	COX7A2	COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL	cytochrome c oxidase subunit VIIa polypeptide 2 (liver)	protein-coding
19-PTNLD28-TUMOR_peak_33106	chr15	39186930	39187124	+	5.60910	NA	Intergenic	L2c|LINE|L2	198228	NM_207444	400359	Hs.448785	NM_207444	HPRD:13418	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
19-PTNLD28-TUMOR_peak_12694	chr10	30162968	30163076	+	5.60910	NA	Intergenic	Intergenic	-138292	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_36319	chr16	11784278	11784504	+	5.60910	NA	intron (NM_015914, intron 8 of 11)	intron (NM_015914, intron 8 of 11)	22102	NM_003498	8303	Hs.618526	NM_003498	HPRD:04327	SNN	-	stannin	protein-coding
19-PTNLD28-TUMOR_peak_41137	chr17	34831285	34831478	+	5.60910	NA	Intergenic	LTR1D|LTR|ERV1	-11090	NR_104010	9326	Hs.2210	NM_004773	HPRD:05139	ZNHIT3	TRIP3	zinc finger, HIT-type containing 3	protein-coding
19-PTNLD28-TUMOR_peak_70585	chr3	127609529	127609617	+	5.60910	NA	Intergenic	LTR10F|LTR|ERV1	-32329	NM_207335	166348	Hs.132087	NM_207335	HPRD:17001	KBTBD12	KLHDC6	kelch repeat and BTB (POZ) domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_65863	chr22	44788572	44788812	+	5.60910	NA	Intergenic	Intergenic	-50515	NR_109966	101927526	Hs.339290	NR_109966	ENSG00000232655	LOC101927526	-	uncharacterized LOC101927526	ncRNA
19-PTNLD28-TUMOR_peak_52308	chr2	40944127	40944234	+	5.60910	NA	Intergenic	MLT2B3|LTR|ERVL	-204605	NM_001112802	6546	Hs.31961	NM_021097	HPRD:01659	SLC8A1	NCX1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_103665	chr9	71614670	71614847	+	5.60910	NA	intron (NM_003558, intron 15 of 15)	intron (NM_003558, intron 15 of 15)	14281	NM_002732	5568	Hs.158029	NM_002732	HPRD:01483	PRKACG	KAPG|PKACg	protein kinase, cAMP-dependent, catalytic, gamma	protein-coding
19-PTNLD28-TUMOR_peak_102525	chr9	25716277	25716446	+	5.60910	NA	Intergenic	LTR50|LTR|ERVL	-37505	NM_001004125	286319	Hs.26268	NM_001004125	HPRD:18247	TUSC1	TSG-9|TSG9	tumor suppressor candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_44209	chr18	421680	421947	+	5.60910	NA	intron (NM_130386, intron 2 of 9)	intron (NM_130386, intron 2 of 9)	78916	NM_130386	81035	Hs.464422	NM_030781	HPRD:06358	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin sub-family member 12	protein-coding
19-PTNLD28-TUMOR_peak_90109	chr6	153219057	153219268	+	5.60910	NA	Intergenic	Intergenic	85041	NM_012177	26271	Hs.520506	NM_012177	HPRD:09348	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
19-PTNLD28-TUMOR_peak_94194	chr7	98833702	98833790	+	5.60910	NA	Intergenic	Intergenic	-28657	NM_001145715	402569	Hs.253050	NM_001145715	ENSG00000185467	KPNA7	-	karyopherin alpha 7 (importin alpha 8)	protein-coding
19-PTNLD28-TUMOR_peak_107892	chrX	31284995	31285100	+	5.60910	NA	promoter-TSS (NM_004018)	promoter-TSS (NM_004018)	-23	NM_004016	1756	Hs.495912	NM_000109	HPRD:02303	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
19-PTNLD28-TUMOR_peak_65576	chr22	39784314	39784625	+	5.60910	NA	Intergenic	CpG	-11290	NM_153497	10454	Hs.507681	NM_006116	HPRD:04012	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102949	chr9	36597512	36597655	+	5.60910	NA	intron (NM_001256690, intron 4 of 15)	intron (NM_001256690, intron 4 of 15)	24724	NR_046337	9833	Hs.184339	NM_014791	HPRD:06119	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
19-PTNLD28-TUMOR_peak_59686	chr20	6055027	6055115	+	5.60910	NA	TTS (NM_017671)	TTS (NM_017671)	-20345	NM_152611	164312	Hs.149133	NM_152611	HPRD:12784	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
19-PTNLD28-TUMOR_peak_60548	chr20	31760694	31760822	+	5.60910	NA	exon (NM_080574, exon 3 of 9)	exon (NM_080574, exon 3 of 9)	4798	NM_080574	140683	Hs.125960	NM_080574	HPRD:12781	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_89731	chr6	141772471	141772559	+	5.60910	NA	Intergenic	AluJr|SINE|Alu	637421	NM_002511	4829	Hs.654478	NM_002511	HPRD:01211	NMBR	BB1	neuromedin B receptor	protein-coding
19-PTNLD28-TUMOR_peak_73349	chr3	193950384	193950498	+	5.60910	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	-14996	NR_125402	101929337	Hs.548086	NR_125402		LOC101929337	-	uncharacterized LOC101929337	ncRNA
19-PTNLD28-TUMOR_peak_41522	chr17	40531181	40531282	+	5.60910	NA	intron (NM_139276, intron 1 of 23)	intron (NM_139276, intron 1 of 23)	9174	NM_213662	6774	Hs.463059	NM_003150	HPRD:00026	STAT3	APRF|HIES	signal transducer and activator of transcription 3 (acute-phase response factor)	protein-coding
19-PTNLD28-TUMOR_peak_4721	chr1	88527312	88527400	+	5.60910	NA	Intergenic	Intergenic	-622566	NM_006256	5586	Hs.440833	NM_006256	HPRD:03972	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
19-PTNLD28-TUMOR_peak_41048	chr17	32953357	32953452	+	5.60910	NA	exon (NM_207313, exon 2 of 10)	exon (NM_207313, exon 2 of 10)	45636	NM_207313	124842	Hs.310482	NM_207313	HPRD:14030	TMEM132E	-	transmembrane protein 132E	protein-coding
19-PTNLD28-TUMOR_peak_41429	chr17	39536387	39536551	+	5.60910	NA	intron (NM_021013, intron 3 of 6)	AluSc5|SINE|Alu	2167	NM_021013	3885	Hs.296942	NM_021013	HPRD:04137	KRT34	HA4|Ha-4|KRTHA4|hHa4	keratin 34	protein-coding
19-PTNLD28-TUMOR_peak_97734	chr8	25092555	25092669	+	5.60910	NA	intron (NM_024940, intron 1 of 51)	MIRb|SINE|MIR	50325	NM_024940	80005	Hs.195403	NM_024940	HPRD:09925	DOCK5	-	dedicator of cytokinesis 5	protein-coding
19-PTNLD28-TUMOR_peak_94025	chr7	95033702	95033888	+	5.60910	NA	TTS (NM_000305)	TTS (NM_000305)	-8108	NM_000940	5446	Hs.440967	NM_000940	HPRD:04098	PON3	-	paraoxonase 3	protein-coding
19-PTNLD28-TUMOR_peak_67320	chr3	29557029	29557139	+	5.60910	NA	intron (NM_001003792, intron 3 of 13)	intron (NM_001003792, intron 3 of 13)	234281	NM_001177711	27303	Hs.221436	NM_014483	HPRD:16155	RBMS3	-	RNA binding motif, single stranded interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_14693	chr10	86768402	86768490	+	5.60910	NA	Intergenic	L2a|LINE|L2	190215	NR_120668	101929624	Hs.588831	NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
19-PTNLD28-TUMOR_peak_81423	chr5	105699458	105699546	+	5.60910	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	647213	NR_104671	102467213	Hs.570923	NR_104671		LOC102467213	-	uncharacterized LOC102467213	ncRNA
19-PTNLD28-TUMOR_peak_108881	chrX	87076818	87077000	+	5.60910	NA	Intergenic	L1HS|LINE|L1	304194	NM_057162	56062	Hs.49075	NM_019117	HPRD:02283	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_58536	chr2	220796974	220797081	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-25741	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_34141	chr15	68143428	68143516	+	5.60910	NA	Intergenic	AluJb|SINE|Alu	-11089	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_27197	chr12	131334675	131334771	+	5.60910	NA	Intergenic	MER4B|LTR|ERV1	-10904	NM_001980	2054	Hs.437585	NM_001980	HPRD:11816	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
19-PTNLD28-TUMOR_peak_58141	chr2	210296547	210296777	+	5.60910	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	7891	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_27839	chr13	36729204	36729305	+	5.60910	NA	Intergenic	CpG	-23740	NM_004734	9201	Hs.507755	NM_004734		DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_102165	chr9	9606692	9606821	+	5.60910	NA	intron (NM_002839, intron 7 of 45)	intron (NM_002839, intron 7 of 45)	748738	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103916	chr9	78181921	78182024	+	5.60910	NA	intron (NR_031679, intron 2 of 2).2	LTR22A|LTR|ERVK	156772	NR_031679	100302287		NR_031679		MIR548H3	MIR548H-3|MIRN548H3|hsa-mir-548h-3	microRNA 548h-3	ncRNA
19-PTNLD28-TUMOR_peak_77856	chr4	159897741	159897829	+	5.60910	NA	intron (NM_152543, intron 1 of 4)	L1PA7|LINE|L1	58548	NM_152543	152940	Hs.415576	NM_152543		C4orf45	-	chromosome 4 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_77433	chr4	146309306	146309540	+	5.60910	NA	Intergenic	Intergenic	-93528	NM_005900	4086	Hs.604588	NM_005900	HPRD:03356	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
19-PTNLD28-TUMOR_peak_100562	chr8	124852355	124852451	+	5.60910	NA	Intergenic	Charlie21a|DNA|hAT-Charlie	-11824	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_98045	chr8	30560510	30560605	+	5.60910	NA	intron (NM_001195103, intron 5 of 11)	intron (NM_001195103, intron 5 of 11)	24929	NM_001195104	2936	Hs.271510	NM_000637	HPRD:00704	GSR	HEL-75	glutathione reductase	protein-coding
19-PTNLD28-TUMOR_peak_108034	chrX	41309090	41309209	+	5.60910	NA	intron (NM_022567, intron 1 of 1)	intron (NM_022567, intron 1 of 1)	2436	NM_022567	60506	Hs.302019	NM_022567	HPRD:02232	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
19-PTNLD28-TUMOR_peak_34295	chr15	70722544	70722632	+	5.60910	NA	Intergenic	Intergenic	272032	NM_001008224	55075	Hs.108049	NM_018003	HPRD:11657	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
19-PTNLD28-TUMOR_peak_59693	chr20	6688761	6688919	+	5.60910	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-59905	NM_001200	650	Hs.73853	NM_001200	HPRD:00206	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding
19-PTNLD28-TUMOR_peak_79989	chr5	55903772	55903860	+	5.60910	NA	Intergenic	Intergenic	-1757	NM_001287053	101928448	Hs.208052	NM_001287053		LOC101928448	-	uncharacterized LOC101928448	protein-coding
19-PTNLD28-TUMOR_peak_46188	chr18	66925462	66925573	+	5.60910	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-142767	NM_152721	220164	Hs.278285	NM_152721	HPRD:13244	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
19-PTNLD28-TUMOR_peak_12992	chr10	38284877	38284965	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-14657	NM_001278174	7581	Hs.435774	NM_006954	HPRD:11710	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
19-PTNLD28-TUMOR_peak_73625	chr3	196765612	196765700	+	5.60910	NA	Intergenic	Intergenic	-8969	NM_005929	4241	Hs.184727	NM_005929	HPRD:01122	MFI2	CD228|MAP97|MTF1	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
19-PTNLD28-TUMOR_peak_4776	chr1	90064723	90064831	+	5.60910	NA	Intergenic	Intergenic	33676	NR_033981	400761	Hs.741594	NR_033981	ENSG00000231999	FLJ27354	-	uncharacterized LOC400761	ncRNA
19-PTNLD28-TUMOR_peak_27902	chr13	40317068	40317191	+	5.60910	NA	intron (NM_001145079, intron 18 of 18)	L1PA6|LINE|L1	-78857	NR_036190	100422940		NR_036190	miRBase:MI0015835	MIR4305	-	microRNA 4305	ncRNA
19-PTNLD28-TUMOR_peak_35131	chr15	89618602	89618745	+	5.60910	NA	Intergenic	L2c|LINE|L2	-12708	NM_007011	11057	Hs.122337	NM_007011	HPRD:09791	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28144	chr13	46899278	46899366	+	5.60910	NA	Intergenic	Intergenic	-27343	NR_047493	100861554	Hs.90866	NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
19-PTNLD28-TUMOR_peak_28446	chr13	73557311	73557429	+	5.60910	NA	intron (NM_006346, intron 16 of 17)	AluJr|SINE|Alu	-71744	NM_001286818	688	Hs.508234	NM_001730	HPRD:04212	KLF5	BTEB2|CKLF|IKLF	Kruppel-like factor 5 (intestinal)	protein-coding
19-PTNLD28-TUMOR_peak_42406	chr17	53776677	53776842	+	5.60910	NA	Intergenic	Intergenic	23466	NM_018286	55273	Hs.173233	NM_018286	HPRD:07719	TMEM100	-	transmembrane protein 100	protein-coding
19-PTNLD28-TUMOR_peak_34725	chr15	79115021	79115112	+	5.60910	NA	Intergenic	Intergenic	-11293	NM_014272	11173	Hs.16441	NM_014272	HPRD:05422	ADAMTS7	ADAM-TS 7|ADAM-TS7|ADAMTS-7	ADAM metallopeptidase with thrombospondin type 1 motif, 7	protein-coding
19-PTNLD28-TUMOR_peak_30242	chr14	51240508	51240604	+	5.60910	NA	intron (NM_182946, intron 7 of 29)	intron (NM_182946, intron 7 of 29)	57283	NM_016350	51199	Hs.310429	NM_016350	HPRD:09785	NIN	SCKL7	ninein (GSK3B interacting protein)	protein-coding
19-PTNLD28-TUMOR_peak_104650	chr9	96104805	96104996	+	5.60910	NA	intron (NM_001098808, intron 1 of 4)	intron (NM_001098808, intron 1 of 4)	3796	NM_001098808	445577	Hs.575636	NM_001098808	ENSG00000204352	C9orf129	bA165J3.3	chromosome 9 open reading frame 129	protein-coding
19-PTNLD28-TUMOR_peak_58631	chr2	224858554	224858642	+	5.60910	NA	intron (NR_073116, intron 4 of 9)	intron (NR_073116, intron 4 of 9)	36477	NM_022915	65080	Hs.203559	NM_022915	HPRD:14763	MRPL44	COXPD16|L44MT|MRP-L44	mitochondrial ribosomal protein L44	protein-coding
19-PTNLD28-TUMOR_peak_67765	chr3	43607748	43607891	+	5.60910	NA	intron (NM_018075, intron 7 of 12)	L1PA2|LINE|L1	55741	NM_001204834	55129	Hs.656657	NM_018075	HPRD:07667	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
19-PTNLD28-TUMOR_peak_86987	chr6	35177782	35177908	+	5.60910	NA	Intergenic	Intergenic	-4345	NM_152753	222663	Hs.12923	NM_152753	HPRD:18031	SCUBE3	CEGF3	signal peptide, CUB domain, EGF-like 3	protein-coding
19-PTNLD28-TUMOR_peak_20799	chr11	100547707	100547819	+	5.60910	NA	Intergenic	Intergenic	-10644	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_32270	chr14	104619807	104619939	+	5.60910	NA	intron (NM_015656, intron 3 of 14)	intron (NM_015656, intron 3 of 14)	14813	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding
19-PTNLD28-TUMOR_peak_94982	chr7	121061250	121061347	+	5.60910	NA	Intergenic	L2a|LINE|L2	-24876	NM_001040020	10447	Hs.434053	NM_014888	HPRD:12270	FAM3C	ILEI	family with sequence similarity 3, member C	protein-coding
19-PTNLD28-TUMOR_peak_104294	chr9	88984206	88984346	+	5.60910	NA	Intergenic	LTR26|LTR|ERV1	-14874	NM_001185059	79670	Hs.597057	NM_024617	HPRD:11697	ZCCHC6	PAPD6|TUT7	zinc finger, CCHC domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_103887	chr9	77039580	77039742	+	5.60910	NA	intron (NR_106746, intron 1 of 7)	L1PA2|LINE|L1	53214	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
19-PTNLD28-TUMOR_peak_101247	chr8	136478905	136479012	+	5.60910	NA	intron (NM_006558, intron 1 of 8)	intron (NM_006558, intron 1 of 8)	9242	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_53651	chr2	78645320	78645445	+	5.60910	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-127525	NR_110288	101927967	Hs.406952	NR_110288		LOC101927967	-	uncharacterized LOC101927967	ncRNA
19-PTNLD28-TUMOR_peak_55303	chr2	120275149	120275300	+	5.60910	NA	intron (NM_002980, intron 1 of 12)	intron (NM_002980, intron 1 of 12)	6804	NM_002980	6344	Hs.42091	NM_002980	HPRD:01628	SCTR	SR	secretin receptor	protein-coding
19-PTNLD28-TUMOR_peak_67870	chr3	45617329	45617474	+	5.60910	NA	Intergenic	Intergenic	-18922	NM_014240	8994	Hs.193370	NM_014240		LIMD1	-	LIM domains containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53434	chr2	72120099	72120275	+	5.60910	NA	Intergenic	Intergenic	254804	NM_001277742	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_56710	chr2	163694775	163694908	+	5.60910	NA	intron (NM_033272, intron 1 of 15)	intron (NM_033272, intron 1 of 15)	416	NM_173162	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_104602	chr9	95226482	95226570	+	5.60910	NA	intron (NM_017680, intron 5 of 7)	intron (NM_017680, intron 5 of 7)	18318	NM_001193335	54829	Hs.435655	NM_017680	HPRD:16288	ASPN	OS3|PLAP-1|PLAP1|SLRR1C	asporin	protein-coding
19-PTNLD28-TUMOR_peak_72631	chr3	181488995	181489152	+	5.60910	NA	Intergenic	Intergenic	59361	NM_003106	6657	Hs.518438	NM_003106	HPRD:08921	SOX2	ANOP3|MCOPS3	SRY (sex determining region Y)-box 2	protein-coding
19-PTNLD28-TUMOR_peak_34834	chr15	82439398	82439507	+	5.60910	NA	intron (NM_001040610, intron 16 of 17)	L3|LINE|CR1	58517	NR_120367	101929690	Hs.176109	NR_120367	ENSG00000259518	LOC101929690	-	uncharacterized LOC101929690	ncRNA
19-PTNLD28-TUMOR_peak_20010	chr11	74281705	74281819	+	5.60910	NA	Intergenic	Intergenic	-21813	NR_046409	10714	Hs.82502	NM_006591	HPRD:11446	POLD3	P66|P68|PPP1R128	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_15811	chr10	116853606	116853696	+	5.60910	NA	exon (NM_207303, exon 1 of 29)	exon (NM_207303, exon 1 of 29)	527	NM_001276282	26033	Hs.501127	NM_207303	HPRD:12504	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_5274	chr1	107771486	107771587	+	5.60910	NA	intron (NM_001113226, intron 2 of 7)	intron (NM_001113226, intron 2 of 7)	88791	NM_014917	22854	Hs.732535	NM_014917	HPRD:16389	NTNG1	Lmnt1	netrin G1	protein-coding
19-PTNLD28-TUMOR_peak_71872	chr3	155713499	155713599	+	5.60910	NA	Intergenic	MER90|LTR|ERV1	-124788	NM_172160	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_83090	chr5	148542110	148542198	+	5.60910	NA	intron (NM_001301018, intron 1 of 21)	intron (NM_001301018, intron 1 of 21)	20582	NM_001301018	22885	Hs.49688	NM_014945	HPRD:12411	ABLIM3	-	actin binding LIM protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_57004	chr2	173818913	173819082	+	5.60910	NA	intron (NM_001282901, intron 1 of 24)	L1MCb|LINE|L1	26064	NM_001282901	11069	Hs.470646	NM_007023	HPRD:06929	RAPGEF4	2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding
19-PTNLD28-TUMOR_peak_21004	chr11	107769126	107769214	+	5.60910	NA	Intergenic	Intergenic	-30107	NM_017516	54734	Hs.354906	NM_017516	HPRD:11470	RAB39A	RAB39	RAB39A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_102007	chr9	3968946	3969133	+	5.60910	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	70393	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_69336	chr3	94891380	94891515	+	5.60910	NA	Intergenic	Intergenic	234340	NR_015400	255025	Hs.130994	NR_015400	ENSG00000239589	LINC00879	-	long intergenic non-protein coding RNA 879	ncRNA
19-PTNLD28-TUMOR_peak_9821	chr1	207748878	207748979	+	5.60910	NA	intron (NM_000651, intron 27 of 46)	intron (NM_000651, intron 27 of 46)	-69530	NM_175710	1379	Hs.628568	NM_175710	ENSG00000197721	CR1L	-	complement component (3b/4b) receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_104674	chr9	96818970	96819153	+	5.60910	NA	intron (NM_177995, intron 1 of 9)	intron (NM_177995, intron 1 of 9)	25970	NM_001253830	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27543	chr13	26626023	26626173	+	5.60910	NA	promoter-TSS (NM_001007538)	promoter-TSS (NM_001007538)	-900	NM_001007538	387914	Hs.433791	NM_001007538	HPRD:16589	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
19-PTNLD28-TUMOR_peak_10099	chr1	219503109	219503207	+	5.60910	NA	Intergenic	Intergenic	154847	NM_001300772	127018	Hs.657617	NM_138794	HPRD:14335	LYPLAL1	-	lysophospholipase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_53430	chr2	72070593	72070707	+	5.60910	NA	Intergenic	Intergenic	304341	NM_001277742	56603	Hs.91546	NM_019885	HPRD:05550	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450, family 26, subfamily B, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_98492	chr8	42522122	42522217	+	5.60910	NA	Intergenic	LTR81A|LTR|Gypsy	-30393	NM_000749	1142	Hs.654576	NM_000749	HPRD:00336	CHRNB3	-	cholinergic receptor, nicotinic, beta 3 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_31988	chr14	99701568	99701692	+	5.60910	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	36420	NM_022898	64919	Hs.709690	NM_022898	HPRD:05950	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B (zinc finger protein)	protein-coding
19-PTNLD28-TUMOR_peak_77962	chr4	168349407	168349530	+	5.60910	NA	Intergenic	Intergenic	-193727	NM_001204355	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_75947	chr4	82057456	82057872	+	5.60910	NA	intron (NM_001282481, intron 8 of 13)	intron (NM_001282481, intron 8 of 13)	17647	NM_001282482	5593	Hs.232044	NM_006259	HPRD:09034	PRKG2	PRKGR2|cGK2|cGKII	protein kinase, cGMP-dependent, type II	protein-coding
19-PTNLD28-TUMOR_peak_68936	chr3	69836709	69836847	+	5.60910	NA	intron (NM_006722, intron 1 of 9)	intron (NM_006722, intron 1 of 9)	23816	NM_006722	4286	Hs.166017	NM_000248	HPRD:01138	MITF	CMM8|MI|WS2|WS2A|bHLHe32	microphthalmia-associated transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_108053	chrX	42555162	42555260	+	5.60910	NA	Intergenic	LTR16C|LTR|ERVL	82275	NR_002191	80316	Hs.127689	NM_025210		PPP1R2P9	I-4	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_75693	chr4	75560826	75560975	+	5.60910	NA	Intergenic	Intergenic	80309	NM_001657	374	Hs.270833	NM_001657	HPRD:00093	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19-PTNLD28-TUMOR_peak_100445	chr8	122724513	122724601	+	5.60910	NA	Intergenic	Intergenic	-70927	NM_005328	3037	Hs.159226	NM_005328		HAS2	-	hyaluronan synthase 2	protein-coding
19-PTNLD28-TUMOR_peak_13821	chr10	62738606	62738753	+	5.60910	NA	intron (NR_024554, intron 2 of 11)	intron (NR_024554, intron 2 of 11)	22057	NR_024554	9886	Hs.737374	NM_014836	HPRD:06299	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30851	chr14	66505411	66505533	+	5.60910	NA	Intergenic	Intergenic	-447617	NR_110308	440184	Hs.412138	NM_001004331	HPRD:14708	LINC00238	C14orf53|NCRNA00238	long intergenic non-protein coding RNA 238	ncRNA
19-PTNLD28-TUMOR_peak_102180	chr9	12366458	12366585	+	5.60910	NA	Intergenic	L1MC1|LINE|L1	-326865	NM_000550	7306	Hs.270279	NM_000550	HPRD:00283	TYRP1	CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN	tyrosinase-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91985	chr7	34945889	34945977	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-71990	NR_015356	404744	Hs.487951	NM_207283	HPRD:12265	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65257	chr22	35551005	35551093	+	5.60910	NA	Intergenic	Intergenic	88919	NM_001008494	91464	Hs.567637	NM_001008494	HPRD:17957	ISX	Pix-1|RAXLX	intestine-specific homeobox	protein-coding
19-PTNLD28-TUMOR_peak_78985	chr5	13816193	13816490	+	5.60910	NA	intron (NM_001369, intron 42 of 78)	L2a|LINE|L2	128248	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_94001	chr7	94453384	94453480	+	5.60910	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-83517	NM_001166160	55607	Hs.21816	NM_017650	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	protein phosphatase 1, regulatory subunit 9A	protein-coding
19-PTNLD28-TUMOR_peak_17151	chr11	11272174	11272262	+	5.60910	NA	Intergenic	Intergenic	102686	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2, alpha 3 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_66091	chr22	50578584	50578672	+	5.60910	NA	intron (NM_018995, intron 15 of 26)	L1ME1|LINE|L1	-6856	NM_001164106	54456	Hs.62880	NM_018995	HPRD:16158	MOV10L1	CHAMP|DJ402G11.8	Mov10 RISC complex RNA helicase like 1	protein-coding
19-PTNLD28-TUMOR_peak_76816	chr4	120472486	120472574	+	5.60910	NA	intron (NM_033437, intron 9 of 20)	MamRep605|Unknown|Unknown	75912	NM_033430	8654	Hs.647971	NM_001083	HPRD:04497	PDE5A	CGB-PDE|CN5A|PDE5	phosphodiesterase 5A, cGMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_75502	chr4	60384868	60385146	+	5.60910	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-1977832	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_97987	chr8	29628067	29628185	+	5.60910	NA	Intergenic	Intergenic	-22501	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_103130	chr9	40191893	40192004	+	5.60910	NA	Intergenic	MER21C|LTR|ERVL	291602	NR_026803	401507	Hs.553802	NM_001012278	HPRD:17394	FAM74A1	FAM74A5	family with sequence similarity 74, member A1	ncRNA
19-PTNLD28-TUMOR_peak_78461	chr4	188936325	188936440	+	5.60910	NA	Intergenic	L1MB7|LINE|L1	19457	NM_174900	132625	Hs.335787	NM_174900	HPRD:15726	ZFP42	REX1|ZNF754	ZFP42 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_58248	chr2	215275785	215275905	+	5.60910	NA	promoter-TSS (NM_001080500)	promoter-TSS (NM_001080500)	-616	NM_001080500	402117	Hs.534834	NM_001080500		VWC2L	-	von Willebrand factor C domain containing protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_34290	chr15	70608598	70608686	+	5.60910	NA	Intergenic	Intergenic	-218386	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_103911	chr9	77990872	77991050	+	5.60910	NA	Intergenic	AluYa5|SINE|Alu	287563	NM_012383	26578	Hs.494192	NM_012383	HPRD:17808	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_103707	chr9	72086485	72086573	+	5.60910	NA	intron (NM_001163, intron 4 of 12)	intron (NM_001163, intron 4 of 12)	142288	NM_004816	9413	Hs.118003	NM_004816	HPRD:16255	FAM189A2	C9orf61|X123	family with sequence similarity 189, member A2	protein-coding
19-PTNLD28-TUMOR_peak_35852	chr16	2827989	2828238	+	5.60910	NA	promoter-TSS (NM_207013)	promoter-TSS (NM_207013)	-816	NM_207013	6923	Hs.172772	NM_007108	HPRD:02874	TCEB2	ELOB|SIII	transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)	protein-coding
19-PTNLD28-TUMOR_peak_89427	chr6	129243493	129243581	+	5.60910	NA	intron (NM_001079823, intron 1 of 63)	L1PA3|LINE|L1	39251	NM_000426	3908	Hs.200841	NM_000426	HPRD:01125	LAMA2	LAMM	laminin, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_27497	chr13	24859239	24859340	+	5.60910	NA	intron (NM_001286792, intron 7 of 14)	intron (NM_001286792, intron 7 of 14)	14464	NM_001286794	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_3440	chr1	50807086	50807179	+	5.60910	NA	Intergenic	Intergenic	81987	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT-like family A2	protein-coding
19-PTNLD28-TUMOR_peak_79611	chr5	39485313	39485528	+	5.60910	NA	Intergenic	Eulor2A|DNA?|DNA?	-35113	NR_104632	101926940	Hs.436359	NR_104632	ENSG00000271334	LOC101926940	-	uncharacterized LOC101926940	ncRNA
19-PTNLD28-TUMOR_peak_53590	chr2	74995579	74995701	+	5.60910	NA	Intergenic	Intergenic	-64142	NM_000189	3099	Hs.406266	NM_000189	HPRD:03080	HK2	HKII|HXK2	hexokinase 2	protein-coding
19-PTNLD28-TUMOR_peak_29408	chr14	22057589	22057681	+	5.60910	NA	Intergenic	LTR10A|LTR|ERV1	-18760	NM_001005465	26533	Hs.554581	NM_001005465	HPRD:14888	OR10G3	OR14-40	olfactory receptor, family 10, subfamily G, member 3	protein-coding
19-PTNLD28-TUMOR_peak_102105	chr9	6086136	6086283	+	5.60910	NA	Intergenic	HERVI-int|LTR|ERV1	-70569	NM_012416	26953	Hs.167496	NM_012416	HPRD:17953	RANBP6	-	RAN binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_23400	chr12	24103567	24103655	+	5.60910	NA	promoter-TSS (NM_006940)	promoter-TSS (NM_006940)	355	NM_001261415	6660	Hs.657542	NM_006940	HPRD:18086	SOX5	L-SOX5|L-SOX5B|L-SOX5F	SRY (sex determining region Y)-box 5	protein-coding
19-PTNLD28-TUMOR_peak_25704	chr12	96710214	96710351	+	5.60910	NA	intron (NM_002595, intron 3 of 16)	L1PA2|LINE|L1	84084	NM_002595	5128	Hs.506415	NM_002595	HPRD:09141	CDK17	PCTAIRE2|PCTK2	cyclin-dependent kinase 17	protein-coding
19-PTNLD28-TUMOR_peak_55622	chr2	129500204	129500292	+	5.60910	NA	Intergenic	Intergenic	-121926	NR_110278	101927881	Hs.570247	NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
19-PTNLD28-TUMOR_peak_31386	chr14	77027967	77028135	+	5.60910	NA	Intergenic	MER51A|LTR|ERV1	190361	NM_004452	2103	Hs.435845	NM_004452	HPRD:03700	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_28402	chr13	66071536	66071664	+	5.60910	NA	Intergenic	Intergenic	-1327701	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_56172	chr2	147563942	147564058	+	5.60910	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	219375	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_43185	chr17	69643172	69643349	+	5.60910	NA	Intergenic	L1PA10|LINE|L1	378860	NR_110876	102723505	Hs.547482	NR_110876		LOC102723505	-	uncharacterized LOC102723505	ncRNA
19-PTNLD28-TUMOR_peak_21494	chr11	118295596	118295750	+	5.60910	NA	Intergenic	Intergenic	-6143	NR_046370	100131626	Hs.721614	NR_046369		LOC100131626	-	uncharacterized LOC100131626	ncRNA
19-PTNLD28-TUMOR_peak_68453	chr3	54904521	54904669	+	5.60910	NA	intron (NM_018398, intron 17 of 37)	intron (NM_018398, intron 17 of 37)	30687	NR_046666	100874237	Hs.570583	NR_046666	ENSG00000243715	CACNA2D3-AS1	-	CACNA2D3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_15027	chr10	97347928	97348016	+	5.60910	NA	Intergenic	Intergenic	-26795	NM_001290294	10580	Hs.38621	NM_006434	HPRD:05587	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_91735	chr7	27170617	27170853	+	5.60910	NA	promoter-TSS (NM_002141)	promoter-TSS (NM_002141)	-336	NM_002141	3201	Hs.533357	NM_002141	HPRD:00841	HOXA4	HOX1|HOX1D	homeobox A4	protein-coding
19-PTNLD28-TUMOR_peak_17318	chr11	13376866	13377090	+	5.60910	NA	intron (NM_001030273, intron 5 of 19)	intron (NM_001030273, intron 5 of 19)	77704	NM_001297722	406	Hs.65734	NM_001178	HPRD:03973	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
19-PTNLD28-TUMOR_peak_97381	chr8	18629204	18629319	+	5.60910	NA	intron (NM_015310, intron 8 of 15)	L1MB7|LINE|L1	37144	NM_206909	23362	Hs.434255	NM_015310	HPRD:11462	PSD3	EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_13961	chr10	69588824	69589045	+	5.60910	NA	intron (NM_201262, intron 1 of 2)	LTR19B|LTR|ERV1	9003	NM_201262	56521	Hs.260720	NM_021800	HPRD:06930	DNAJC12	JDP1	DnaJ (Hsp40) homolog, subfamily C, member 12	protein-coding
19-PTNLD28-TUMOR_peak_50622	chr19_gl000209_random	124345	124480	+	5.60910	NA	intron (NM_014512, intron 5 of 7)	intron (NM_014512, intron 5 of 7)	-7021	NM_001291701	100132285	Hs.512572	NM_012312		KIR2DS2	183ActI|CD158J|CD158b|NKAT-5|NKAT5|cl-49	killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2	protein-coding
19-PTNLD28-TUMOR_peak_78052	chr4	172824322	172824410	+	5.60910	NA	intron (NM_001034845, intron 2 of 12)	L1PA3|LINE|L1	89791	NM_001034845	442117	Hs.386236	NM_001034845	ENSG00000174473	GALNTL6	GALNACT20|GALNT17|GalNAc-T6L	polypeptide N-acetylgalactosaminyltransferase-like 6	protein-coding
19-PTNLD28-TUMOR_peak_28996	chr13	108686206	108686294	+	5.60910	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-166790	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155, member A	protein-coding
19-PTNLD28-TUMOR_peak_83645	chr5	160213950	160214079	+	5.60910	NA	intron (NM_025153, intron 1 of 25)	intron (NM_025153, intron 1 of 25)	65205	NM_025153	23120	Hs.109358	NM_025153	HPRD:08637	ATP10B	ATPVB	ATPase, class V, type 10B	protein-coding
19-PTNLD28-TUMOR_peak_63539	chr21	40211670	40211841	+	5.60910	NA	Intergenic	Intergenic	-17708	NR_109926	101928398	Hs.122403	NR_109926		LOC101928398	-	uncharacterized LOC101928398	ncRNA
19-PTNLD28-TUMOR_peak_23302	chr12	19018199	19018323	+	5.60910	NA	Intergenic	Intergenic	127216	NM_033328	93661	Hs.131288	NM_033328	HPRD:12282	CAPZA3	CAPPA3|Gsg3	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_76455	chr4	103997460	103997755	+	5.60910	NA	5' UTR (NM_178833, exon 1 of 12)	5' UTR (NM_178833, exon 1 of 12)	323	NM_178833	133308	Hs.546482	NM_178833	HPRD:14051	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding
19-PTNLD28-TUMOR_peak_10558	chr1	227556894	227557036	+	5.60910	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-51139	NM_003607	8476	Hs.35433	NM_003607	HPRD:04562	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_88838	chr6	96898145	96898278	+	5.60910	NA	Intergenic	Intergenic	-71491	NM_015323	23376	Hs.149367	NM_015323	HPRD:11109	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1-specific ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_99732	chr8	101553166	101553261	+	5.60910	NA	intron (NM_198401, intron 1 of 5)	intron (NM_198401, intron 1 of 5)	18726	NM_001270378	157567	Hs.530199	NM_198401	HPRD:14103	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
19-PTNLD28-TUMOR_peak_88230	chr6	70980469	70980623	+	5.60910	NA	intron (NM_001851, intron 14 of 37)	intron (NM_001851, intron 14 of 37)	12365	NM_078485	1297	Hs.590892	NM_001851	HPRD:00367	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen, type IX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_96858	chr8	1123449	1123542	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	127328	NR_111948	286083	Hs.382131	NR_033895	ENSG00000253640	LOC286083	-	uncharacterized LOC286083	ncRNA
19-PTNLD28-TUMOR_peak_56795	chr2	166887670	166887906	+	5.60910	NA	intron (NR_110598, intron 3 of 3)	intron (NR_110598, intron 3 of 3)	42361	NM_001165963	6323	Hs.22654	NM_006920	HPRD:01669	SCN1A	EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI	sodium channel, voltage-gated, type I, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_76288	chr4	94652785	94652876	+	5.60910	NA	intron (NM_001510, intron 14 of 15)	intron (NM_001510, intron 14 of 15)	-97248	NM_005172	474	Hs.532680	NM_005172	HPRD:03270	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_68738	chr3	63843122	63843259	+	5.60910	NA	intron (NM_025075, intron 1 of 7)	intron (NM_025075, intron 1 of 7)	-3131	NR_104326	100874039		NR_104326		THOC7-AS1	-	THOC7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27203	chr12	131481290	131481403	+	5.60910	NA	intron (NM_198827, intron 8 of 24)	SVA_D|Other|Other	42894	NM_198827	283383	Hs.719239	NM_198827	HPRD:17061	GPR133	PGR25	G protein-coupled receptor 133	protein-coding
19-PTNLD28-TUMOR_peak_20996	chr11	107701731	107701888	+	5.60910	NA	intron (NM_017515, intron 1 of 7)	intron (NM_017515, intron 1 of 7)	28105	NM_017515	54733	Hs.524014	NM_017515	HPRD:15377	SLC35F2	HSNOV1	solute carrier family 35, member F2	protein-coding
19-PTNLD28-TUMOR_peak_83328	chr5	152456346	152456457	+	5.60910	NA	Intergenic	L1HS|LINE|L1	-104492	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19-PTNLD28-TUMOR_peak_97037	chr8	8188201	8188414	+	5.60910	NA	intron (NM_001080826, intron 3 of 4)	intron (NM_001080826, intron 3 of 4)	51037	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_88833	chr6	96041094	96041214	+	5.60910	NA	intron (NM_024641, intron 2 of 4)	intron (NM_024641, intron 2 of 4)	15781	NM_024641	79694	Hs.734632	NM_024641	HPRD:14357	MANEA	ENDO|hEndo	mannosidase, endo-alpha	protein-coding
19-PTNLD28-TUMOR_peak_16121	chr10	126186750	126186838	+	5.60910	NA	intron (NM_001167880, intron 5 of 5)	intron (NM_001167880, intron 5 of 5)	36453	NM_001167880	64077	Hs.527748	NM_022126	HPRD:17274	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
19-PTNLD28-TUMOR_peak_74053	chr4	4132590	4132682	+	5.60910	NA	Intergenic	HERVE-int|LTR|ERV1	95985	NM_177998	133060	Hs.534544	NM_177998	HPRD:07421	OTOP1	-	otopetrin 1	protein-coding
19-PTNLD28-TUMOR_peak_5519	chr1	111625191	111625336	+	5.60910	NA	Intergenic	L1PA15|LINE|L1	-56986	NM_001007794	10390	Hs.363572	NM_006090	HPRD:13024	CEPT1	-	choline/ethanolamine phosphotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_58124	chr2	209616775	209616863	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	345264	NM_005048	5746	Hs.570296	NM_005048	HPRD:03276	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
19-PTNLD28-TUMOR_peak_90018	chr6	151128092	151128180	+	5.60910	NA	intron (NM_001029884, intron 8 of 16)	MER44B|DNA|TcMar-Tigger	-58679	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_58949	chr2	235087496	235087665	+	5.60910	NA	Intergenic	Intergenic	128234	NM_006944	6694	Hs.444488	NM_006944	HPRD:04029	SPP2	SPP-24|SPP24	secreted phosphoprotein 2, 24kDa	protein-coding
19-PTNLD28-TUMOR_peak_107416	chrX	3528001	3528089	+	5.60910	NA	intron (NM_005044, intron 8 of 8)	intron (NM_005044, intron 8 of 8)	-49483	NR_046643	100873944		NR_046643		PRKX-AS1	-	PRKX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28286	chr13	52187172	52187286	+	5.60910	NA	intron (NM_052950, intron 1 of 11)	FAM|SINE|Alu	28745	NM_052950	115825	Hs.46506	NM_052950	HPRD:18294	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_77402	chr4	145095693	145095802	+	5.60910	NA	Intergenic	Intergenic	-33843	NM_002099	2993	Hs.434973	NM_002099	HPRD:07508	GYPA	CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2	glycophorin A (MNS blood group)	protein-coding
19-PTNLD28-TUMOR_peak_23679	chr12	32484115	32484357	+	5.60910	NA	intron (NM_001003398, intron 5 of 8)	intron (NM_001003398, intron 5 of 8)	-170805	NM_139241	121512	Hs.117835	NM_139241	HPRD:16891	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_92080	chr7	38600777	38600866	+	5.60910	NA	intron (NM_001635, intron 1 of 20)	MIR3|SINE|MIR	70346	NM_001635	273	Hs.592182	NM_001635	HPRD:02687	AMPH	AMPH1	amphiphysin	protein-coding
19-PTNLD28-TUMOR_peak_23895	chr12	45345196	45345349	+	5.60910	NA	Intergenic	L1PA2|LINE|L1	-37561	NM_001145110	4753	Hs.505326	NM_006159	HPRD:11891	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_109599	chrX	136114108	136114245	+	5.60910	NA	promoter-TSS (NM_054021)	promoter-TSS (NM_054021)	-343	NM_054021	83550	Hs.350569	NM_054021	HPRD:02315	GPR101	GPCR6	G protein-coupled receptor 101	protein-coding
19-PTNLD28-TUMOR_peak_109029	chrX	103133793	103133934	+	5.60910	NA	Intergenic	LTR25-int|LTR|ERV1	-46651	NM_016370	51209	Hs.522736	NM_016370	HPRD:02237	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_108145	chrX	46670602	46670865	+	5.60910	NA	Intergenic	L1MDb|LINE|L1	-25614	NM_006915	6102	Hs.44766	NM_006915	HPRD:02424	RP2	DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2	retinitis pigmentosa 2 (X-linked recessive)	protein-coding
19-PTNLD28-TUMOR_peak_28083	chr13	45505090	45505178	+	5.60910	NA	Intergenic	LTR50|LTR|ERVL	58479	NM_012345	26747	Hs.525006	NM_012345	HPRD:05073	NUFIP1	NUFIP|bA540M5.1	nuclear fragile X mental retardation protein interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_109346	chrX	120442202	120442450	+	5.60910	NA	Intergenic	Intergenic	260864	NM_012084	2747	Hs.368538	NM_012084	HPRD:02143	GLUD2	GDH2|GLUDP1	glutamate dehydrogenase 2	protein-coding
19-PTNLD28-TUMOR_peak_103406	chr9	65821570	65821681	+	5.60910	NA	Intergenic	MER21C|LTR|ERVL	-312015	NM_001113541	727905	Hs.645497	NM_001113541	ENSG00000233788	SPATA31A5	FAM75A5	SPATA31 subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_69330	chr3	94022969	94023057	+	5.60910	NA	Intergenic	Intergenic	-240946	NM_001195643	200895	Hs.718516	NM_176815	HPRD:11246	DHFRL1	DHFRP4	dihydrofolate reductase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_56159	chr2	146321437	146321527	+	5.60910	NA	Intergenic	Intergenic	895948	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_75082	chr4	41541219	41541324	+	5.60910	NA	intron (NM_001289122, intron 3 of 25)	intron (NM_001289122, intron 3 of 25)	-73518	NM_001112719	22998	Hs.335163	NM_014988	HPRD:11125	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
19-PTNLD28-TUMOR_peak_8643	chr1	181483689	181483800	+	5.60910	NA	intron (NM_001205293, intron 3 of 47)	intron (NM_001205293, intron 3 of 47)	31058	NM_001205294	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_77998	chr4	169899308	169899397	+	5.60910	NA	Intergenic	L2b|LINE|L2	32116	NM_032783	84869	Hs.659311	NM_032783	HPRD:07859	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
19-PTNLD28-TUMOR_peak_12583	chr10	27802906	27803058	+	5.60910	NA	intron (NR_046172, intron 2 of 5)	L1M7|LINE|L1	9879	NM_001256412	22931	Hs.406799	NM_021252	HPRD:03731	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_63484	chr21	39159922	39160150	+	5.60910	NA	intron (NM_002240, intron 2 of 3)	intron (NM_002240, intron 2 of 3)	128705	NM_002240	3763	Hs.626242	NM_002240		KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
19-PTNLD28-TUMOR_peak_98759	chr8	54146983	54147073	+	5.60910	NA	intron (NM_000912, intron 3 of 3)	intron (NM_000912, intron 3 of 3)	17166	NM_000912	4986	Hs.106795	NM_000912	HPRD:01309	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor, kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_91251	chr7	7759039	7759153	+	5.60910	NA	promoter-TSS (NM_002947)	promoter-TSS (NM_002947)	-858	NM_002947	6119	Hs.487540	NM_002947		RPA3	REPA3	replication protein A3, 14kDa	protein-coding
19-PTNLD28-TUMOR_peak_45316	chr18	36637804	36637908	+	5.60910	NA	Intergenic	Intergenic	-618829	NR_049847	100847025		NR_049847	miRBase:MI0019139	MIR5583-1	-	microRNA 5583-1	ncRNA
19-PTNLD28-TUMOR_peak_75359	chr4	55400636	55400724	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-123415	NM_000222	3815	Hs.479754	NM_000222	HPRD:01287	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_71001	chr3	134286721	134286809	+	5.60910	NA	intron (NM_001042384, intron 11 of 11)	intron (NM_001042384, intron 11 of 11)	81718	NM_025180	80254	Hs.443301	NM_025180	HPRD:07826	CEP63	SCKL6	centrosomal protein 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_62503	chr20	61045617	61045710	+	5.60910	NA	intron (NM_080473, intron 3 of 6)	intron (NM_080473, intron 3 of 6)	5363	NM_080473	140628	Hs.352250	NM_080473	HPRD:17029	GATA5	GATAS|bB379O24.1	GATA binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_99592	chr8	96714821	96714957	+	5.60910	NA	intron (NR_038205, intron 2 of 2)	intron (NR_038205, intron 2 of 2)	245687	NR_036611	100500773	Hs.741582	NR_036611		LOC100500773	-	serine/arginine-rich splicing factor 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_96149	chr7	148267751	148267959	+	5.60910	NA	Intergenic	LTR8|LTR|ERV1	-19802	NM_145304	202865	Hs.352212	NM_145304	HPRD:12921	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_34438	chr15	74213009	74213097	+	5.60910	NA	intron (NR_040068, intron 1 of 2)	MER41B|LTR|ERV1	-5736	NM_005576	4016	Hs.65436	NM_005576	HPRD:08861	LOXL1	LOL|LOXL	lysyl oxidase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_71442	chr3	143316216	143316306	+	5.60910	NA	intron (NM_173653, intron 6 of 15)	LTR18B|LTR|ERVL	251112	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_79848	chr5	52615233	52615328	+	5.60910	NA	Intergenic	Intergenic	-160984	NM_006350	10468	Hs.9914	NM_006350	HPRD:00641	FST	FS	follistatin	protein-coding
19-PTNLD28-TUMOR_peak_21661	chr11	120646989	120647162	+	5.60910	NA	intron (NM_001282470, intron 2 of 19)	intron (NM_001282470, intron 2 of 19)	211880	NM_001282473	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_37748	chr16	50285380	50285512	+	5.60910	NA	Intergenic	Intergenic	-15005	NM_001286057	113	Hs.513578	NM_001114	HPRD:02663	ADCY7	AC7	adenylate cyclase 7	protein-coding
19-PTNLD28-TUMOR_peak_77278	chr4	141281377	141281465	+	5.60910	NA	intron (NM_001153635, intron 2 of 4)	intron (NM_001153635, intron 2 of 4)	13125	NR_033939	100129858	Hs.660477	NR_033939	ENSG00000196951	SCOC-AS1	-	SCOC antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54391	chr2	98786529	98786683	+	5.60910	NA	intron (NM_144992, intron 8 of 27)	(TGAA)n|Simple_repeat|Simple_repeat	83011	NM_144992	200403	Hs.269977	NM_144992	HPRD:14510	VWA3B	-	von Willebrand factor A domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_88640	chr6	87631409	87631502	+	5.60910	NA	Intergenic	L1PA3|LINE|L1	-15569	NM_000865	3354	Hs.1611	NM_000865	HPRD:01635	HTR1E	5-HT1E	5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_98916	chr8	59108628	59108725	+	5.60910	NA	Intergenic	Intergenic	75984	NR_105005	101929528	Hs.563551	NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
19-PTNLD28-TUMOR_peak_65385	chr22	37505668	37505977	+	5.60910	NA	promoter-TSS (NM_001289000)	promoter-TSS (NM_001289000)	-219	NM_001289000	164656	Hs.370885	NM_153609	HPRD:10270	TMPRSS6	IRIDA	transmembrane protease, serine 6	protein-coding
19-PTNLD28-TUMOR_peak_14437	chr10	78044885	78044987	+	5.60910	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	502417	NM_032024	83938	Hs.118161	NM_032024	HPRD:12560	C10orf11	OCA5|OCA7	chromosome 10 open reading frame 11	protein-coding
19-PTNLD28-TUMOR_peak_4347	chr1	72900840	72900942	+	5.60910	NA	Intergenic	ERVL-E-int|LTR|ERVL	-152614	NM_173808	257194	Hs.146542	NM_173808		NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_9941	chr1	211816935	211817140	+	5.60910	NA	Intergenic	Intergenic	31935	NM_002497	4751	Hs.153704	NM_002497	HPRD:04953	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA-related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_28130	chr13	46453801	46453996	+	5.60910	NA	Intergenic	Intergenic	-28052	NM_198849	283514	Hs.368483	NM_198849	HPRD:14145	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_68465	chr3	55203696	55203976	+	5.60910	NA	Intergenic	Intergenic	-241764	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_53303	chr2	69858681	69858771	+	5.60910	NA	intron (NM_014911, intron 2 of 21)	intron (NM_014911, intron 2 of 21)	12251	NM_014911	22848	Hs.468878	NM_014911		AAK1	-	AP2 associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_5481	chr1	110913582	110913676	+	5.60910	NA	intron (NM_001201548, intron 6 of 6)	intron (NM_001201548, intron 6 of 6)	20075	NM_004696	9122	Hs.351306	NM_004696	HPRD:04855	SLC16A4	MCT4|MCT5	solute carrier family 16, member 4	protein-coding
19-PTNLD28-TUMOR_peak_42340	chr17	50467116	50467236	+	5.60910	NA	Intergenic	Intergenic	-229799	NM_001082534	56934	Hs.463466	NM_020178	HPRD:05224	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase X	protein-coding
19-PTNLD28-TUMOR_peak_65738	chr22	42740695	42740840	+	5.60910	NA	Intergenic	Intergenic	24447	NR_120597	102723775	Hs.335413	NR_120595		LINC01315	lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
19-PTNLD28-TUMOR_peak_110310	chrY	25409678	25409816	+	5.60910	NA	intron (NM_020364, intron 15 of 18)	L1PA2|LINE|L1	44143	NM_001005786	57055	Hs.592257	NM_020363	HPRD:11848	DAZ2	pDP1678	deleted in azoospermia 2	protein-coding
19-PTNLD28-TUMOR_peak_58235	chr2	214116406	214116511	+	5.60910	NA	Intergenic	Intergenic	32471	NM_001242575	100130451		NM_001242575		LOC100130451	-	uncharacterized LOC100130451	protein-coding
19-PTNLD28-TUMOR_peak_23675	chr12	32455352	32455440	+	5.60910	NA	intron (NM_001003398, intron 3 of 8)	intron (NM_001003398, intron 3 of 8)	195211	NM_001714	636	Hs.505202	NM_001714	HPRD:03730	BICD1	BICD	bicaudal D homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_51251	chr2	15309878	15309998	+	5.60910	NA	intron (NR_052013, intron 50 of 50)	intron (NR_052013, intron 50 of 50)	391534	NR_052013	51594	Hs.467759	NM_015909	HPRD:10473	NBAS	NAG|SOPH	neuroblastoma amplified sequence	protein-coding
19-PTNLD28-TUMOR_peak_44450	chr18	8389771	8389875	+	5.60910	NA	intron (NM_001105244, intron 31 of 32)	intron (NM_001105244, intron 31 of 32)	-22791	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
19-PTNLD28-TUMOR_peak_59360	chr20	96215	96362	+	5.60910	NA	Intergenic	Intergenic	-26906	NM_030931	81623	Hs.124211	NM_030931		DEFB126	C20orf8|DEFB-26|DEFB26|bA530N10.1|hBD-26	defensin, beta 126	protein-coding
19-PTNLD28-TUMOR_peak_100032	chr8	107799120	107799325	+	5.60910	NA	Intergenic	Intergenic	-16750	NM_139166	137735	Hs.374668	NM_139166	HPRD:11608	ABRA	STARS	actin-binding Rho activating protein	protein-coding
19-PTNLD28-TUMOR_peak_11839	chr10	5915574	5915662	+	5.60910	NA	intron (NM_019046, intron 7 of 7)	intron (NM_019046, intron 7 of 7)	-15917	NM_001258452	84893	Hs.498543	NM_032807	HPRD:06243	FBXO18	FBH1|Fbx18	F-box protein, helicase, 18	protein-coding
19-PTNLD28-TUMOR_peak_13713	chr10	58775418	58775538	+	5.60910	NA	Intergenic	HERVL18-int|LTR|ERVL	288841	NR_037490	100500834		NR_037490	miRBase:MI0016432	MIR3924	-	microRNA 3924	ncRNA
19-PTNLD28-TUMOR_peak_58488	chr2	220217305	220217393	+	5.60910	NA	Intergenic	Intergenic	-19450	NM_001007089	389075	Hs.290551	NM_001007089	HPRD:17968	RESP18	-	regulated endocrine-specific protein 18	protein-coding
19-PTNLD28-TUMOR_peak_67144	chr3	23542932	23543260	+	5.60910	NA	intron (NM_152653, intron 4 of 5)	L3|LINE|CR1	167470	NR_039621	100616384		NR_039621		MIR548AC	-	microRNA 548ac	ncRNA
19-PTNLD28-TUMOR_peak_21427	chr11	117110106	117110282	+	5.60910	NA	intron (NM_001077239, intron 3 of 14)	intron (NM_001077239, intron 3 of 14)	6742	NM_001077239	257160	Hs.591934	NM_207343	HPRD:16815	RNF214	-	ring finger protein 214	protein-coding
19-PTNLD28-TUMOR_peak_43694	chr17	75905448	75905572	+	5.60910	NA	Intergenic	Intergenic	-25341	NR_028337	400624	Hs.514521	NM_001001685		FLJ45079	-	FLJ45079 protein	ncRNA
19-PTNLD28-TUMOR_peak_76690	chr4	114594811	114594932	+	5.60910	NA	intron (NM_172114, intron 2 of 17)	intron (NM_172114, intron 2 of 17)	88212	NM_172127	817	Hs.144114	NM_001221	HPRD:09653	CAMK2D	CAMKD	calcium/calmodulin-dependent protein kinase II delta	protein-coding
19-PTNLD28-TUMOR_peak_14017	chr10	70980373	70980497	+	5.60812	NA	intron (NM_025130, intron 1 of 17)	intron (NM_025130, intron 1 of 17)	376	NM_025130	80201	Hs.522988	NM_025130	HPRD:08006	HKDC1	-	hexokinase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_85987	chr6	24776077	24776216	+	5.60772	NA	intron (NM_001251991, intron 1 of 6)	MER112|DNA|hAT-Charlie	505	NM_001251991	51053	Hs.234896	NM_015895	HPRD:06783	GMNN	Gem	geminin, DNA replication inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_97251	chr8	12612694	12612822	+	5.60580	NA	exon (NM_152271, exon 1 of 12)	exon (NM_152271, exon 1 of 12)	234	NM_152271	91694	Hs.180178	NM_152271	HPRD:08674	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
19-PTNLD28-TUMOR_peak_68671	chr3	61546309	61546504	+	5.60580	NA	promoter-TSS (NM_002841)	promoter-TSS (NM_002841)	-837	NM_002841	5793	Hs.595541	NM_002841		PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase, receptor type, G	protein-coding
19-PTNLD28-TUMOR_peak_18708	chr11	58395661	58395762	+	5.60580	NA	Intergenic	Intergenic	5565	NM_000614	1270	Hs.524920	NM_000614	HPRD:00347	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_50646	chr1_gl000192_random	15529	15659	+	5.60448	NA	Intergenic	CpG	391916	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_47697	chr19	15235554	15235652	+	5.60448	NA	intron (NM_006844, intron 2 of 15)	intron (NM_006844, intron 2 of 15)	1007	NM_006844	10994	Hs.78880	NM_006844	HPRD:16152	ILVBL	209L8|AHAS|ILV2H	ilvB (bacterial acetolactate synthase)-like	protein-coding
19-PTNLD28-TUMOR_peak_88664	chr6	88411375	88411666	+	5.60448	NA	5' UTR (NM_018064, exon 1 of 5)	5' UTR (NM_018064, exon 1 of 5)	465	NM_018064	55122	Hs.485915	NM_018064	HPRD:12864	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
19-PTNLD28-TUMOR_peak_40498	chr17	18935207	18935309	+	5.60309	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	15078	NM_006613	10750	Hs.567416	NM_006613		GRAP	-	GRB2-related adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_28333	chr13	53227220	53227391	+	5.60309	NA	intron (NM_001130912, intron 2 of 13)	intron (NM_001130912, intron 2 of 13)	474	NM_006704	10910	Hs.281902	NM_006704		SUGT1	SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70748	chr3	129611721	129611993	+	5.60309	NA	promoter-TSS (NR_037893)	promoter-TSS (NR_037893)	562	NM_001128224	23023	Hs.477547	NM_015008	HPRD:15518	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
19-PTNLD28-TUMOR_peak_48141	chr19	19313572	19314040	+	5.60309	NA	intron (NM_001300945, intron 1 of 5)	intron (NM_001300945, intron 1 of 5)	432	NM_001300945	126382	Hs.708153	NM_176880	HPRD:16376	NR2C2AP	TRA16	nuclear receptor 2C2-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_10989	chr1	234645655	234645859	+	5.59851	NA	Intergenic	Intergenic	21768	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
19-PTNLD28-TUMOR_peak_17416	chr11	16627644	16627759	+	5.59851	NA	Intergenic	CpG	-129766	NM_033326	55553	Hs.368226	NM_017508	HPRD:06267	SOX6	HSSOX6|SOXD	SRY (sex determining region Y)-box 6	protein-coding
19-PTNLD28-TUMOR_peak_44156	chr17	81059858	81060063	+	5.59851	NA	Intergenic	Intergenic	22393	NM_001004431	284207	Hs.378821	NM_001004431	HPRD:11255	METRNL	-	meteorin, glial cell differentiation regulator-like	protein-coding
19-PTNLD28-TUMOR_peak_102713	chr9	33447487	33447649	+	5.59851	NA	promoter-TSS (NM_004925)	promoter-TSS (NM_004925)	63	NM_004925	360	Hs.234642	NM_004925	HPRD:08970	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
19-PTNLD28-TUMOR_peak_71661	chr3	149689145	149689254	+	5.59851	NA	promoter-TSS (NM_002628)	promoter-TSS (NM_002628)	133	NR_036538	646903	Hs.632559	NR_036538		LOC646903	-	uncharacterized LOC646903	ncRNA
19-PTNLD28-TUMOR_peak_39064	chr16	84149981	84150100	+	5.59354	NA	intron (NM_003791, intron 1 of 22)	CpG	508	NM_003791	8720	Hs.75890	NM_003791	HPRD:04522	MBTPS1	PCSK8|S1P|SKI-1	membrane-bound transcription factor peptidase, site 1	protein-coding
19-PTNLD28-TUMOR_peak_16622	chr11	1968981	1969088	+	5.59181	NA	intron (NM_021134, intron 1 of 4)	GC_rich|Low_complexity|Low_complexity	532	NM_021134	6150	Hs.3254	NM_021134	HPRD:02876	MRPL23	L23MRP|RPL23|RPL23L	mitochondrial ribosomal protein L23	protein-coding
19-PTNLD28-TUMOR_peak_47930	chr19	17690875	17690989	+	5.59181	NA	intron (NM_024656, intron 10 of 11)	intron (NM_024656, intron 10 of 11)	24421	NM_024656	79709	Hs.418795	NM_024656	HPRD:07986	COLGALT1	GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_19048	chr11	62689328	62689535	+	5.59181	NA	promoter-TSS (NM_000738)	promoter-TSS (NM_000738)	-419	NM_000738	1128	Hs.632119	NM_000738	HPRD:00338	CHRM1	HM1|M1|M1R	cholinergic receptor, muscarinic 1	protein-coding
19-PTNLD28-TUMOR_peak_43554	chr17	74448602	74448698	+	5.59181	NA	promoter-TSS (NM_001166579)	promoter-TSS (NM_001166579)	638	NM_022066	63893	Hs.16130	NM_022066	HPRD:10928	UBE2O	E2-230K	ubiquitin-conjugating enzyme E2O	protein-coding
19-PTNLD28-TUMOR_peak_14993	chr10	96305184	96305425	+	5.59181	NA	promoter-TSS (NM_018063)	promoter-TSS (NM_018063)	-220	NM_001289074	3070	Hs.655830	NM_018063	HPRD:07232	HELLS	LSH|PASG|SMARCA6	helicase, lymphoid-specific	protein-coding
19-PTNLD28-TUMOR_peak_31019	chr14	69599959	69600099	+	5.59181	NA	intron (NM_001284206, intron 1 of 8)	MER102a|DNA|hAT-Charlie	19287	NM_001284207	8816	Hs.509780	NM_003861	HPRD:16032	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
19-PTNLD28-TUMOR_peak_34466	chr15	74428600	74428704	+	5.59181	NA	3' UTR (NM_001130138, exon 4 of 4)	3' UTR (NM_001130138, exon 4 of 4)	5909	NM_020851	57611	Hs.254775	NM_020851	HPRD:13865	ISLR2	LINX	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding
19-PTNLD28-TUMOR_peak_82280	chr5	134350034	134350122	+	5.59181	NA	Intergenic	Intergenic	-18892	NM_001277348	100996485		NM_001277348	ENSG00000224186	C5orf66	-	chromosome 5 open reading frame 66	protein-coding
19-PTNLD28-TUMOR_peak_95754	chr7	139128066	139128292	+	5.59181	NA	Intergenic	L1M7|LINE|L1	-15907	NR_033999	100129148	Hs.744449	NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
19-PTNLD28-TUMOR_peak_50304	chr19	54982528	54982616	+	5.59181	NA	intron (NM_145057, intron 2 of 2)	CpG	1865	NM_145057	148170	Hs.415791	NM_145057	HPRD:13023	CDC42EP5	Borg3|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding
19-PTNLD28-TUMOR_peak_65733	chr22	42666590	42666678	+	5.59181	NA	intron (NR_036498, intron 1 of 1)	CpG	875	NR_036498	388906	Hs.730075	NR_036498	ENSG00000182057	OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_19120	chr11	64002520	64002608	+	5.59042	NA	TTS (NM_005528)	TTS (NM_005528)	508	NM_001243733	7423	Hs.732095	NM_003377		VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
19-PTNLD28-TUMOR_peak_48747	chr19	36500252	36500421	+	5.58937	NA	promoter-TSS (NM_001039876)	promoter-TSS (NM_001039876)	-641	NM_001297735	163183	Hs.436743	NM_153233	HPRD:08776	SYNE4	C19orf46|DFNB76|Nesp4	spectrin repeat containing, nuclear envelope family member 4	protein-coding
19-PTNLD28-TUMOR_peak_96419	chr7	151414659	151414764	+	5.58937	NA	intron (NM_001040633, intron 3 of 15)	intron (NM_001040633, intron 3 of 15)	-85367	NM_024429	51422	Hs.647072	NM_016203	HPRD:04119	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_44113	chr17	80476969	80477206	+	5.58937	NA	promoter-TSS (NM_004514)	promoter-TSS (NM_004514)	-507	NM_004514	3607	Hs.591140	NM_004514	HPRD:00982	FOXK2	ILF|ILF-1|ILF1	forkhead box K2	protein-coding
19-PTNLD28-TUMOR_peak_104670	chr9	96740946	96741188	+	5.58664	NA	Intergenic	Intergenic	-23459	NM_021570	56033	Hs.164960	NM_021570	HPRD:16017	BARX1	-	BARX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_36194	chr16	9939991	9940175	+	5.58664	NA	intron (NM_000833, intron 6 of 13)	intron (NM_000833, intron 6 of 13)	-281835	NR_106988	102465753		NR_106988		MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
19-PTNLD28-TUMOR_peak_72893	chr3	185678019	185678120	+	5.58664	NA	intron (NR_033752, intron 1 of 5)	intron (NR_033752, intron 1 of 5)	311	NR_033752	344887	Hs.128803	NR_033752	ENSG00000171658	LOC344887	-	NmrA-like family domain containing 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_94182	chr7	98638146	98638236	+	5.58664	NA	intron (NM_001199847, intron 12 of 17)	intron (NM_001199847, intron 12 of 17)	27403	NR_110102	101927550	Hs.636663	NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
19-PTNLD28-TUMOR_peak_81784	chr5	121648460	121648573	+	5.58664	NA	intron (NM_005460, intron 1 of 10)	CpG	696	NM_001242935	9627	Hs.426463	NM_005460	HPRD:04804	SNCAIP	SYPH1|Sph1	synuclein, alpha interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_97044	chr8	8274606	8274809	+	5.58664	NA	Intergenic	Intergenic	-35363	NM_001080826	157285	Hs.583863	NM_001080826	ENSG00000182319	SGK223	PRAGMIN	homolog of rat pragma of Rnd2	protein-coding
19-PTNLD28-TUMOR_peak_17235	chr11	12439633	12439845	+	5.58664	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	40713	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	parvin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_57731	chr2	201200130	201200218	+	5.58664	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	26501	NM_001282744	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_9247	chr1	201592094	201592182	+	5.58664	NA	Intergenic	Intergenic	-25312	NM_020443	89796	Hs.585374	NM_020443	HPRD:10113	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
19-PTNLD28-TUMOR_peak_92461	chr7	47749911	47750066	+	5.58664	NA	Intergenic	Intergenic	-51086	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
19-PTNLD28-TUMOR_peak_22592	chr12	4257675	4257844	+	5.58664	NA	Intergenic	Intergenic	-125143	NM_001759	894	Hs.376071	NM_001759	HPRD:00451	CCND2	KIAK0002	cyclin D2	protein-coding
19-PTNLD28-TUMOR_peak_26028	chr12	106614551	106614639	+	5.58664	NA	Intergenic	L2c|LINE|L2	27118	NM_006825	10970	Hs.74368	NM_006825	HPRD:16717	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_51275	chr2	15887935	15888125	+	5.58664	NA	Intergenic	Intergenic	57124	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LOC101926966	-	uncharacterized LOC101926966	ncRNA
19-PTNLD28-TUMOR_peak_66923	chr3	15838712	15838820	+	5.58664	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	925	NM_001195098	23243	Hs.335239	NM_015199	HPRD:10651	ANKRD28	PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_61555	chr20	46546435	46546538	+	5.58664	NA	Intergenic	LOR1b|LTR|ERV1	-65484	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
19-PTNLD28-TUMOR_peak_51630	chr2	25923240	25923330	+	5.58553	NA	Intergenic	Intergenic	-26769	NM_033148	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_104542	chr9	93880532	93880643	+	5.58553	NA	Intergenic	CpG	-43173	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
19-PTNLD28-TUMOR_peak_81616	chr5	113084132	113084373	+	5.58553	NA	Intergenic	LTR54B|LTR|ERV1	234861	NM_022828	64848	Hs.231942	NM_022828	HPRD:11690	YTHDC2	CAHL	YTH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_83362	chr5	153582654	153582742	+	5.58553	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	12403	NM_198321	55568	Hs.631797	NM_017540	HPRD:12157	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_54802	chr2	110067384	110067608	+	5.58553	NA	intron (NM_001099289, intron 8 of 9)	intron (NM_001099289, intron 8 of 9)	-137415	NR_036224	100423027		NR_036224	miRBase:MI0015870	MIR4266	-	microRNA 4266	ncRNA
19-PTNLD28-TUMOR_peak_1981	chr1	31143588	31143768	+	5.58553	NA	Intergenic	Intergenic	-47941	NR_034182	100129196	Hs.659751	NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49182	chr19	42104064	42104152	+	5.58553	NA	Intergenic	L1MC4a|LINE|L1	21577	NM_033543	90273	Hs.655885	NM_033543	HPRD:10179	CEACAM21	CEACAM3|R29124_1	carcinoembryonic antigen-related cell adhesion molecule 21	protein-coding
19-PTNLD28-TUMOR_peak_99650	chr8	99070990	99071085	+	5.58553	NA	Intergenic	AluJb|SINE|Alu	-5713	NM_173549	203111	Hs.171455	NM_173549	HPRD:08802	ERICH5	C8orf47	glutamate-rich 5	protein-coding
19-PTNLD28-TUMOR_peak_74854	chr4	26237345	26237444	+	5.58553	NA	Intergenic	Intergenic	-83938	NM_203283	3516	Hs.479396	NM_005349	HPRD:00920	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
19-PTNLD28-TUMOR_peak_63305	chr21	35831809	35832023	+	5.58553	NA	promoter-TSS (NM_001127669)	promoter-TSS (NM_001127669)	-14	NM_001127668	3753	Hs.121495	NM_000219	HPRD:01442	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel, Isk-related family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_66617	chr3	11590287	11590447	+	5.58553	NA	intron (NM_001136031, intron 17 of 17)	L1MC4a|LINE|L1	20031	NM_001128221	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_102795	chr9	34585109	34585197	+	5.58553	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	4582	NM_001842	1271	Hs.129966	NM_001842	HPRD:00348	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_46001	chr18	57217173	57217425	+	5.58553	NA	intron (NM_133459, intron 2 of 10)	X3_LINE|LINE|RTE-BovB	147345	NM_133459	147372	Hs.34333	NM_133459	HPRD:08703	CCBE1	-	collagen and calcium binding EGF domains 1	protein-coding
19-PTNLD28-TUMOR_peak_33972	chr15	64619328	64619446	+	5.58553	NA	intron (NM_022048, intron 1 of 11)	L1PA2|LINE|L1	29055	NM_022048	53944	Hs.646508	NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_41596	chr17	41364017	41364154	+	5.58553	NA	TTS (NM_005899)	TTS (NM_005899)	239	NM_145041	113277	Hs.536474	NM_145041	HPRD:11315	TMEM106A	-	transmembrane protein 106A	protein-coding
19-PTNLD28-TUMOR_peak_1595	chr1	25580399	25580754	+	5.58553	NA	Intergenic	Intergenic	-6591	NM_020317	57035	Hs.259412	NM_020317	HPRD:14835	RSRP1	C1orf63|DJ465N24.2.1|NPD014	arginine/serine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_44575	chr18	10951086	10951174	+	5.58553	NA	intron (NM_022068, intron 3 of 51)	MER65C|LTR|ERV1	197631	NM_022068	63895	Hs.436902	NM_022068	HPRD:07636	PIEZO2	C18orf30|C18orf58|DA3|DA5|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo-type mechanosensitive ion channel component 2	protein-coding
19-PTNLD28-TUMOR_peak_49018	chr19	40006295	40006437	+	5.58553	NA	exon (NM_182704, exon 1 of 6)	exon (NM_182704, exon 1 of 6)	613	NM_182704	348303	Hs.319284	NM_182704	HPRD:12134	SELV	-	selenoprotein V	protein-coding
19-PTNLD28-TUMOR_peak_36689	chr16	20733635	20733731	+	5.58553	NA	Intergenic	Intergenic	19516	NM_017736	55623	Hs.700004	NM_017736	HPRD:08619	THUMPD1	-	THUMP domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_20831	chr11	101731623	101731724	+	5.58553	NA	Intergenic	LTR16A|LTR|ERVL	-54073	NM_020802	57562	Hs.156352	NM_020802	HPRD:17212	KIAA1377	-	KIAA1377	protein-coding
19-PTNLD28-TUMOR_peak_69073	chr3	73500776	73500892	+	5.58553	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-69639	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
19-PTNLD28-TUMOR_peak_51711	chr2	27244490	27244639	+	5.58553	NA	intron (NM_012326, intron 1 of 6)	L2b|LINE|L2	-11210	NM_001083590	54867	Hs.533934	NM_017727	HPRD:07887	TMEM214	-	transmembrane protein 214	protein-coding
19-PTNLD28-TUMOR_peak_82847	chr5	142210346	142210459	+	5.58539	NA	intron (NM_015071, intron 1 of 22)	intron (NM_015071, intron 1 of 22)	38073	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31725	chr14	92506708	92506798	+	5.58539	NA	promoter-TSS (NM_004239)	promoter-TSS (NM_004239)	-350	NM_004239	9321	Hs.632339	NM_004239	HPRD:05143	TRIP11	ACG1A|CEV14|GMAP-210|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
19-PTNLD28-TUMOR_peak_61946	chr20	50419909	50419998	+	5.58539	NA	promoter-TSS (NM_020436)	promoter-TSS (NM_020436)	-905	NM_020436	57167	Hs.517113	NM_020436	HPRD:08458	SALL4	DRRS|HSAL4|ZNF797|dJ1112F19.1	spalt-like transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_31391	chr14	77239264	77239362	+	5.58539	NA	intron (NM_014909, intron 3 of 6)	intron (NM_014909, intron 3 of 6)	11078	NM_014909	22846	Hs.525479	NM_014909	HPRD:12353	VASH1	KIAA1036	vasohibin 1	protein-coding
19-PTNLD28-TUMOR_peak_1481	chr1	24070296	24070408	+	5.58539	NA	intron (NM_003198, intron 1 of 10)	CpG	496	NM_003198	6924	Hs.15535	NM_003198	HPRD:02873	TCEB3	EloA|SIII|SIII p110|TCEB3A	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	protein-coding
19-PTNLD28-TUMOR_peak_17590	chr11	19696996	19697084	+	5.58398	NA	intron (NM_001111018, intron 1 of 37)	L2c|LINE|L2	-37841	NM_145117	89797	Hs.64341	NM_145117	HPRD:07385	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
19-PTNLD28-TUMOR_peak_5364	chr1	109809711	109809802	+	5.58398	NA	intron (NM_001408, intron 15 of 33)	L2c|LINE|L2	16034	NM_032636	84722	Hs.405925	NM_032636	HPRD:13127	PSRC1	DDA3|FP3214	proline/serine-rich coiled-coil 1	protein-coding
19-PTNLD28-TUMOR_peak_31413	chr14	77489491	77489585	+	5.58334	NA	Intergenic	Intergenic	5504	NM_024496	64207	Hs.179260	NM_024496	HPRD:10713	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_79296	chr5	31194104	31194398	+	5.58334	NA	intron (NM_004932, intron 1 of 11)	CpG	489	NM_004932	1004	Hs.124776	NM_004932	HPRD:04305	CDH6	CAD6|KCAD	cadherin 6, type 2, K-cadherin (fetal kidney)	protein-coding
19-PTNLD28-TUMOR_peak_67594	chr3	39147859	39147968	+	5.58334	NA	intron (NR_103866, intron 1 of 8)	intron (NR_103866, intron 1 of 8)	-1239	NM_001105513	199223	Hs.443935	NM_145755	HPRD:10254	TTC21A	STI2	tetratricopeptide repeat domain 21A	protein-coding
19-PTNLD28-TUMOR_peak_73985	chr4	3482380	3482548	+	5.58269	NA	intron (NM_001301071, intron 4 of 9)	intron (NM_001301071, intron 4 of 9)	-3807	NM_001256896	285489	Hs.122110	NM_173660	HPRD:08744	DOK7	C4orf25|CMS1B	docking protein 7	protein-coding
19-PTNLD28-TUMOR_peak_15133	chr10	99497171	99497272	+	5.58135	NA	intron (NM_001002262, intron 1 of 11)	CpG	343	NM_001174120	118813	Hs.744075	NM_144588	HPRD:15735	ZFYVE27	PROTRUDIN|SPG33	zinc finger, FYVE domain containing 27	protein-coding
19-PTNLD28-TUMOR_peak_38484	chr16	69391699	69391956	+	5.58135	NA	intron (NM_005652, intron 8 of 9)	AluY|SINE|Alu	-6115	NM_144676	146456	Hs.729118	NM_144676	HPRD:15520	TMED6	PRO34237|SPLL9146	transmembrane emp24 protein transport domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_77372	chr4	143642485	143642575	+	5.58135	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	125074	NM_003866	8821	Hs.531403	NM_003866	HPRD:06322	INPP4B	-	inositol polyphosphate-4-phosphatase, type II, 105kDa	protein-coding
19-PTNLD28-TUMOR_peak_51123	chr2	11095211	11095420	+	5.58135	NA	Intergenic	Intergenic	43252	NM_002236	3754	Hs.23735	NM_002236	HPRD:04808	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
19-PTNLD28-TUMOR_peak_59091	chr2	238421522	238421701	+	5.58135	NA	intron (NR_104019, intron 4 of 16)	intron (NR_104019, intron 4 of 16)	2037	NR_106869	102465486		NR_106869		MIR6811	hsa-mir-6811	microRNA 6811	ncRNA
19-PTNLD28-TUMOR_peak_97985	chr8	29595550	29595655	+	5.58135	NA	intron (NR_026765, intron 1 of 3)	intron (NR_026765, intron 1 of 3)	10023	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA
19-PTNLD28-TUMOR_peak_78034	chr4	170713001	170713100	+	5.58135	NA	Intergenic	Intergenic	-33957	NM_017867	54969	Hs.406756	NM_017867	HPRD:07924	C4orf27	-	chromosome 4 open reading frame 27	protein-coding
19-PTNLD28-TUMOR_peak_89531	chr6	134385191	134385287	+	5.58135	NA	Intergenic	Intergenic	-11450	NM_145176	154091	Hs.486508	NM_145176		SLC2A12	GLUT12|GLUT8	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_25509	chr12	88429835	88429947	+	5.58135	NA	intron (NM_001009894, intron 1 of 6)	intron (NM_001009894, intron 1 of 6)	623	NM_001009894	91298	Hs.591009	NM_001009894	HPRD:13199	C12orf29	-	chromosome 12 open reading frame 29	protein-coding
19-PTNLD28-TUMOR_peak_8458	chr1	178478658	178478886	+	5.58135	NA	Intergenic	Intergenic	-3440	NM_001170722	84066	Hs.534501	NM_032126	HPRD:13169	TEX35	C1orf49|TSC24	testis expressed 35	protein-coding
19-PTNLD28-TUMOR_peak_8390	chr1	176827826	176828028	+	5.58135	NA	intron (NM_001286164, intron 22 of 22)	intron (NM_001286164, intron 22 of 22)	170654	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	ncRNA
19-PTNLD28-TUMOR_peak_76150	chr4	87778573	87778810	+	5.58135	NA	Intergenic	Intergenic	-8275	NM_197965	345274	Hs.452996	NM_197965	HPRD:11593	SLC10A6	SOAT	solute carrier family 10 (sodium/bile acid cotransporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_25165	chr12	69005343	69005564	+	5.58067	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	834	NM_001010942	5908	Hs.369920	NM_015646	HPRD:01546	RAP1B	K-REV|RAL1B	RAP1B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_2612	chr1	39457458	39457603	+	5.58067	NA	intron (NM_001136275, intron 1 of 3)	intron (NM_001136275, intron 1 of 3)	614	NM_001136275	79647	Hs.293563	NM_024595	HPRD:07787	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
19-PTNLD28-TUMOR_peak_26338	chr12	112035726	112035814	+	5.58067	NA	intron (NM_002973, intron 1 of 24)	CpG	1710	NM_002973	6311	Hs.76253	NM_002973	HPRD:03307	ATXN2	ASL13|ATX2|SCA2|TNRC13	ataxin 2	protein-coding
19-PTNLD28-TUMOR_peak_40066	chr17	8076067	8076155	+	5.58067	NA	TTS (NM_032354)	TTS (NM_032354)	3603	NM_183065	84314	Hs.513933	NM_032354		TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding
19-PTNLD28-TUMOR_peak_4696	chr1	87800932	87801162	+	5.58067	NA	intron (NM_006769, intron 2 of 4)	CpG	6896	NM_006769	8543	Hs.436792	NM_006769	HPRD:09122	LMO4	-	LIM domain only 4	protein-coding
19-PTNLD28-TUMOR_peak_101810	chr8	146052151	146052317	+	5.57837	NA	promoter-TSS (NM_003416)	promoter-TSS (NM_003416)	-669	NM_001282797	7553	Hs.493218	NM_003416	HPRD:01918	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
19-PTNLD28-TUMOR_peak_66128	chr22	50970608	50970698	+	5.57837	NA	intron (NM_001014440, intron 1 of 6)	CpG-18151	355	NM_001014440	440836	Hs.531314	NM_001014440	HPRD:18640	ODF3B	ODF3L3	outer dense fiber of sperm tails 3B	protein-coding
19-PTNLD28-TUMOR_peak_46539	chr19	1042002	1042102	+	5.57505	NA	intron (NM_019112, intron 4 of 46)	intron (NM_019112, intron 4 of 46)	1950	NM_019112	10347	Hs.134514	NM_019112	HPRD:09255	ABCA7	ABCA-SSN|ABCX	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding
19-PTNLD28-TUMOR_peak_69528	chr3	105087651	105087753	+	5.57505	NA	intron (NM_001243280, intron 1 of 14)	intron (NM_001243280, intron 1 of 14)	2145	NM_001243280	214	Hs.591293	NM_001627	HPRD:03389	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_104858	chr9	100265132	100265229	+	5.57390	NA	intron (NM_003275, intron 1 of 9)	CpG	1259	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_87465	chr6	41908214	41908359	+	5.57390	NA	exon (NM_001760, exon 2 of 5)	exon (NM_001760, exon 2 of 5)	1300	NM_001760	896	Hs.534307	NM_001760	HPRD:00452	CCND3	-	cyclin D3	protein-coding
19-PTNLD28-TUMOR_peak_81306	chr5	98264046	98264300	+	5.57255	NA	promoter-TSS (NR_036530)	promoter-TSS (NR_036530)	-665	NR_036530	100289230	Hs.552095	NR_036530		LOC100289230	-	uncharacterized LOC100289230	ncRNA
19-PTNLD28-TUMOR_peak_39488	chr16	89772471	89772601	+	5.57076	NA	Intergenic	MIR|SINE|MIR	-4415	NM_152339	124044	Hs.374556	NM_152339	HPRD:14515	SPATA2L	C16orf76|tamo	spermatogenesis associated 2-like	protein-coding
19-PTNLD28-TUMOR_peak_60988	chr20	37456851	37456939	+	5.56466	NA	intron (NM_015568, intron 1 of 10)	intron (NM_015568, intron 1 of 10)	22547	NM_001172735	26051	Hs.45719	NM_015568	HPRD:15168	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1, regulatory subunit 16B	protein-coding
19-PTNLD28-TUMOR_peak_48270	chr19	23254078	23254215	+	5.56466	NA	Intergenic	CpG	-10079	NR_110745	101929144	Hs.531631	NR_110745	ENSG00000261615	LOC101929144	-	uncharacterized LOC101929144	ncRNA
19-PTNLD28-TUMOR_peak_63236	chr21	34673568	34673772	+	5.56466	NA	Intergenic	Intergenic	-23544	NM_000629	3454	Hs.529400	NM_000629	HPRD:00126	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC	interferon (alpha, beta and omega) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_31198	chr14	73208847	73209089	+	5.56466	NA	intron (NM_001280543, intron 4 of 10)	intron (NM_001280543, intron 4 of 10)	150389	NM_001280544	8110	Hs.162868	NM_012074	HPRD:03395	DPF3	BAF45C|CERD4	D4, zinc and double PHD fingers, family 3	protein-coding
19-PTNLD28-TUMOR_peak_1393	chr1	22602432	22602545	+	5.56466	NA	Intergenic	Intergenic	-132969	NM_030761	54361	Hs.25766	NM_030761	HPRD:04601	WNT4	SERKAL|WNT-4	wingless-type MMTV integration site family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_49122	chr19	41354568	41354693	+	5.56466	NA	exon (NM_000762, exon 3 of 9)	exon (NM_000762, exon 3 of 9)	1722	NM_000762	1548	Hs.250615	NM_000762	HPRD:00420	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450, family 2, subfamily A, polypeptide 6	protein-coding
19-PTNLD28-TUMOR_peak_106689	chr9	138372154	138372307	+	5.56466	NA	intron (NM_014811, intron 1 of 3)	CpG	582	NM_014811	9858	Hs.533260	NM_014811	HPRD:11099	PPP1R26	KIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding
19-PTNLD28-TUMOR_peak_63793	chr21	44204381	44204541	+	5.56466	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	94924	NM_001260477	10785	Hs.248815	NM_018669	HPRD:09330	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
19-PTNLD28-TUMOR_peak_96805	chr7_gl000195_random	22491	22664	+	5.56310	NA	Intergenic	BSR/Beta|Satellite|Satellite	64142	NM_001242480	389831	Hs.743984	NM_001242480		LOC389831	-	uncharacterized LOC389831	protein-coding
19-PTNLD28-TUMOR_peak_82282	chr5	134471606	134471734	+	5.56310	NA	intron (NM_001277348, intron 2 of 5)	intron (NM_001277348, intron 2 of 5)	-95933	NR_105050	101927953	Hs.436898	NR_105049	ENSG00000249082	C5orf66-AS1	CTC-276P9.1	C5orf66 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37472	chr16	33250034	33250147	+	5.56222	NA	Intergenic	CpG	-12028	NR_110911	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_106874	chr9	140500152	140500330	+	5.56199	NA	exon (NM_152285, exon 1 of 8)	exon (NM_152285, exon 1 of 8)	145	NM_152285	92714	Hs.12999	NM_152285	HPRD:12491	ARRDC1	-	arrestin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94326	chr7	100201962	100202270	+	5.56199	NA	promoter-TSS (NR_038910)	promoter-TSS (NR_038910)	-455	NR_038910	100129845	Hs.714123	NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_109805	chrX	151143080	151143298	+	5.56199	NA	promoter-TSS (NM_004961)	promoter-TSS (NM_004961)	-38	NM_004961	2564	Hs.22785	NM_004961	HPRD:02104	GABRE	-	gamma-aminobutyric acid (GABA) A receptor, epsilon	protein-coding
19-PTNLD28-TUMOR_peak_64093	chr21	47393761	47393980	+	5.56195	NA	intron (NR_109931, intron 1 of 1)	CpG	986	NR_109931	101928796	Hs.130919	NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
19-PTNLD28-TUMOR_peak_54093	chr2	91691806	91691920	+	5.56195	NA	Intergenic	Intergenic	156112	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29923	chr14	36002763	36002859	+	5.56195	NA	promoter-TSS (NM_032594)	promoter-TSS (NM_032594)	-437	NM_032594	84684	Hs.62813	NM_032594	HPRD:17152	INSM2	IA-6|IA6|mlt1	insulinoma-associated 2	protein-coding
19-PTNLD28-TUMOR_peak_93344	chr7	74290278	74290371	+	5.56195	NA	Intergenic	AluSz|SINE|Alu	16407	NR_040584	442582	Hs.632310	NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	stromal antigen 3-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_27576	chr13	27998564	27998938	+	5.56103	NA	promoter-TSS (NM_002097)	promoter-TSS (NM_002097)	70	NM_002097	2971	Hs.445977	NM_002097	HPRD:02916	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
19-PTNLD28-TUMOR_peak_73621	chr3	196750868	196750988	+	5.55831	NA	intron (NM_005929, intron 4 of 15)	intron (NM_005929, intron 4 of 15)	5758	NM_033316	4241	Hs.184727	NM_005929	HPRD:01122	MFI2	CD228|MAP97|MTF1	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
19-PTNLD28-TUMOR_peak_57964	chr2	205410688	205410853	+	5.55684	NA	exon (NM_152526, exon 1 of 22)	exon (NM_152526, exon 1 of 22)	254	NM_057177	117583	Hs.657382	NM_057177	HPRD:09795	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb	par-3 family cell polarity regulator beta	protein-coding
19-PTNLD28-TUMOR_peak_83887	chr5	170815441	170815751	+	5.55684	NA	intron (NM_001037738, intron 1 of 9)	CpG	888	NM_199185	4869	Hs.557550	NM_002520	HPRD:01246	NPM1	B23|NPM	nucleophosmin (nucleolar phosphoprotein B23, numatrin)	protein-coding
19-PTNLD28-TUMOR_peak_37259	chr16	30705289	30705473	+	5.55684	NA	Intergenic	Intergenic	4429	NM_001256932	730183	Hs.535456	NM_001256932		LOC730183	-	uncharacterized LOC730183	protein-coding
19-PTNLD28-TUMOR_peak_92299	chr7	44621188	44621307	+	5.55684	NA	intron (NM_182547, intron 2 of 4)	intron (NM_182547, intron 2 of 4)	580	NM_182547	222068	Hs.598832	NM_182547	HPRD:13666	TMED4	ERS25|HNLF	transmembrane emp24 protein transport domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_105497	chr9	115843926	115844031	+	5.55173	NA	Intergenic	CpG	-24907	NM_001282515	7539	Hs.150406	NM_003408	HPRD:04258	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_95657	chr7	137531011	137531135	+	5.55049	NA	intron (NM_004717, intron 1 of 33)	intron (NM_004717, intron 1 of 33)	536	NM_004717	9162	Hs.242947	NM_004717	HPRD:07238	DGKI	DGK-IOTA	diacylglycerol kinase, iota	protein-coding
19-PTNLD28-TUMOR_peak_58533	chr2	220716505	220716884	+	5.55049	NA	Intergenic	Intergenic	54592	NR_036228	100422959		NR_036228	miRBase:MI0015874	MIR4268	-	microRNA 4268	ncRNA
19-PTNLD28-TUMOR_peak_26711	chr12	121400437	121400572	+	5.55049	NA	Intergenic	Intergenic	9591	NR_024345	283460	Hs.612351	NM_178513	ENSG00000272214	HNF1A-AS1	C12orf27|NCRNA00262	HNF1A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_778	chr1	11753326	11753425	+	5.55049	NA	intron (NM_198545, intron 1 of 6)	intron (NM_198545, intron 1 of 6)	1594	NM_198545	374946	Hs.632364	NM_198545		DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
19-PTNLD28-TUMOR_peak_1192	chr1	19201856	19201944	+	5.55049	NA	exon (NM_003748, exon 13 of 15)	exon (NM_003748, exon 13 of 15)	7869	NR_039844	100616120		NR_039844		MIR4695	-	microRNA 4695	ncRNA
19-PTNLD28-TUMOR_peak_74631	chr4	16084203	16084372	+	5.55049	NA	intron (NM_001145848, intron 1 of 26)	CpG	1307	NM_001145847	8842	Hs.614734	NM_006017	HPRD:05079	PROM1	AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4	prominin 1	protein-coding
19-PTNLD28-TUMOR_peak_1245	chr1	20092208	20092393	+	5.55049	NA	intron (NM_181719, intron 6 of 15)	intron (NM_181719, intron 6 of 15)	34110	NM_181719	255104	Hs.656313	NM_181719	HPRD:14140	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
19-PTNLD28-TUMOR_peak_108213	chrX	48019913	48020048	+	5.55049	NA	Intergenic	Intergenic	29941	NM_001079900	729201	Hs.319319	NM_001079900	ENSG00000171478	SPACA5B	-	sperm acrosome associated 5B	protein-coding
19-PTNLD28-TUMOR_peak_42159	chr17	47907598	47907686	+	5.55049	NA	Intergenic	AluSz6|SINE|Alu	-15630	NM_001242791	729220	Hs.434138	NM_001242791		FLJ45513	-	uncharacterized LOC729220	protein-coding
19-PTNLD28-TUMOR_peak_13977	chr10	69991436	69991524	+	5.55049	NA	5' UTR (NM_145178, exon 1 of 1)	5' UTR (NM_145178, exon 1 of 1)	390	NM_145178	220202	Hs.175396	NM_145178	HPRD:09812	ATOH7	Math5|RNANC|bHLHa13	atonal homolog 7 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_63656	chr21	42783357	42783445	+	5.55049	NA	Intergenic	L1PBa|LINE|L1	-9084	NM_001144925	4599	Hs.517307	NM_002462	HPRD:00919	MX1	IFI-78K|IFI78|MX|MxA	MX dynamin-like GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_20809	chr11	100623517	100623607	+	5.55003	NA	intron (NM_152432, intron 1 of 23)	L1PBa|LINE|L1	65155	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
19-PTNLD28-TUMOR_peak_106666	chr9	137670862	137671191	+	5.55003	NA	intron (NM_001278074, intron 27 of 65)	intron (NM_001278074, intron 27 of 65)	70189	NR_039691	100616333		NR_039691	miRBase:MI0016832	MIR3689C	-	microRNA 3689c	ncRNA
19-PTNLD28-TUMOR_peak_2465	chr1	37130348	37130544	+	5.55003	NA	Intergenic	Intergenic	-181531	NM_156039	1441	Hs.524517	NM_000760	HPRD:00737	CSF3R	CD114|GCSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding
19-PTNLD28-TUMOR_peak_11726	chr10	3782401	3782490	+	5.55003	NA	Intergenic	Intergenic	45028	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_43531	chr17	74193980	74194288	+	5.55003	NA	intron (NM_052916, intron 2 of 18)	HERV16-int|LTR|ERVL	42256	NM_052916	114804	Hs.500643	NM_052916	HPRD:15259	RNF157	-	ring finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_54373	chr2	98310100	98310192	+	5.55003	NA	intron (NR_038386, intron 7 of 9)	intron (NR_038386, intron 7 of 9)	-19885	NM_001079	7535	Hs.234569	NM_001079	HPRD:01495	ZAP70	SRK|STCD|STD|TZK|ZAP-70	zeta-chain (TCR) associated protein kinase 70kDa	protein-coding
19-PTNLD28-TUMOR_peak_70602	chr3	127892878	127892994	+	5.55003	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	20623	NM_021937	60678	Hs.477498	NM_021937	HPRD:07409	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_58378	chr2	218808238	218808496	+	5.55003	NA	intron (NM_022648, intron 1 of 32)	intron (NM_022648, intron 1 of 32)	429	NM_022648	7145	Hs.471381	NM_022648	HPRD:02512	TNS1	MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding
19-PTNLD28-TUMOR_peak_26464	chr12	116819801	116820001	+	5.55003	NA	Intergenic	Intergenic	46222	NR_039683	100616309		NR_039683	miRBase:MI0016824	MIR4472-2	-	microRNA 4472-2	ncRNA
19-PTNLD28-TUMOR_peak_7269	chr1	156074995	156075140	+	5.54847	NA	intron (NM_001282625, intron 3 of 12)	MIR3|SINE|MIR	-9394	NM_170707	4000	Hs.594444	NM_005572	HPRD:01035	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1	lamin A/C	protein-coding
19-PTNLD28-TUMOR_peak_10808	chr1	231004213	231004301	+	5.54377	NA	promoter-TSS (NM_032800)	promoter-TSS (NM_032800)	45	NM_032800	84886	Hs.520494	NM_032800	HPRD:13359	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
19-PTNLD28-TUMOR_peak_105593	chr9	117160196	117160292	+	5.54377	NA	Intergenic	CpG	-3559	NM_030767	80709	Hs.494895	NM_030767	HPRD:16148	AKNA	-	AT-hook transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_53576	chr2	74776443	74776849	+	5.54377	NA	exon (NM_032603, exon 4 of 14)	exon (NM_032603, exon 4 of 14)	144	NM_001289165	84695	Hs.469045	NM_032603	HPRD:06200	LOXL3	LOXL	lysyl oxidase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_52881	chr2	56412905	56412997	+	5.54377	NA	promoter-TSS (NR_125368)	promoter-TSS (NR_125368)	-46	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_7654	chr1	161124097	161124197	+	5.54377	NA	intron (NM_016406, intron 1 of 5)	intron (NM_016406, intron 1 of 5)	613	NM_016406	51506	Hs.301412	NM_016406	HPRD:15643	UFC1	HSPC155	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_49077	chr19	40939389	40939548	+	5.54334	NA	Intergenic	L2a|LINE|L2	-7536	NM_013376	29950	Hs.269898	NM_013376		SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_60530	chr20	31408145	31408327	+	5.54334	NA	intron (NM_012325, intron 1 of 6)	MIRb|SINE|MIR	537	NM_012325	22919	Hs.472437	NM_012325	HPRD:04379	MAPRE1	EB1	microtubule-associated protein, RP/EB family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_97122	chr8	10556189	10556281	+	5.54243	NA	intron (NM_001040032, intron 3 of 3)	intron (NM_001040032, intron 3 of 3)	26088	NM_001040032	203076	Hs.371776	NM_001040032	ENSG00000171060	C8orf74	-	chromosome 8 open reading frame 74	protein-coding
19-PTNLD28-TUMOR_peak_44367	chr18	3932178	3932499	+	5.54243	NA	intron (NM_001242761, intron 3 of 11)	intron (NM_001242761, intron 3 of 11)	-30015	NR_102696	101410534	Hs.141055	NR_102696	ENSG00000263878	DLGAP1-AS4	-	DLGAP1 antisense RNA 4	ncRNA
19-PTNLD28-TUMOR_peak_95692	chr7	138062204	138062292	+	5.54243	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-82831	NM_003852	8805	Hs.490287	NM_003852	HPRD:04556	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
19-PTNLD28-TUMOR_peak_38926	chr16	80603563	80603727	+	5.54243	NA	promoter-TSS (NR_104665)	promoter-TSS (NR_104665)	-138	NR_104665	101928276	Hs.149769	NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
19-PTNLD28-TUMOR_peak_99964	chr8	105825300	105825633	+	5.54243	NA	Intergenic	Intergenic	-224214	NM_001135703	29967	Hs.600630	NM_013437	HPRD:17447	LRP12	ST7	low density lipoprotein receptor-related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_106143	chr9	129703017	129703119	+	5.54243	NA	intron (NM_001190730, intron 1 of 11)	intron (NM_001190730, intron 1 of 11)	-21436	NM_001190728	9649	Hs.432842	NM_014636	HPRD:11479	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
19-PTNLD28-TUMOR_peak_43824	chr17	77334796	77334903	+	5.54243	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	177381	NM_001082575	146713	Hs.135229	NM_001025448	HPRD:18730	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
19-PTNLD28-TUMOR_peak_3797	chr1	58878229	58878359	+	5.54243	NA	Intergenic	Intergenic	134152	NM_145243	115209	Hs.425769	NM_145243	HPRD:14879	OMA1	2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase	OMA1 zinc metallopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_27664	chr13	30683028	30683116	+	5.54243	NA	Intergenic	Intergenic	172404	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_98264	chr8	38361500	38361727	+	5.54243	NA	Intergenic	Intergenic	24567	NM_207412	389649	Hs.546586	NM_207412	HPRD:13474	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_27802	chr13	34443289	34443449	+	5.54243	NA	intron (NM_181558, intron 8 of 8)	MLT1N2|LTR|ERVL-MaLR	51163	NM_181558	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_108094	chrX	45152472	45152580	+	5.54243	NA	Intergenic	Intergenic	-92380	NM_176819	79742	Hs.98321	NM_024689	HPRD:06524	CXorf36	4930578C19Rik|DIA1R|EPQL1862|PRO3743|bA435K1.1	chromosome X open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_17023	chr11	9037284	9037466	+	5.54243	NA	Intergenic	Intergenic	-11779	NM_020645	56675	Hs.523467	NM_020645	HPRD:14840	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_86682	chr6	31900318	31900406	+	5.54243	NA	intron (NM_001282459, intron 3 of 5).6	SVA_D|Other|Other	5108	NM_000063	717	Hs.408903	NM_000063	HPRD:08939	C2	ARMD14|CO2	complement component 2	protein-coding
19-PTNLD28-TUMOR_peak_40892	chr17	28619056	28619258	+	5.54243	NA	promoter-TSS (NM_000386)	promoter-TSS (NM_000386)	27	NM_000386	642	Hs.371914	NM_000386	HPRD:03870	BLMH	BH|BMH	bleomycin hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_105775	chr9	122271973	122272066	+	5.54243	NA	Intergenic	L2a|LINE|L2	-140280	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_28676	chr13	93494484	93494620	+	5.54243	NA	intron (NM_004466, intron 7 of 7)	LTR40c|LTR|ERVL	-120685	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_44835	chr18	20122318	20122459	+	5.54243	NA	Intergenic	Intergenic	-124510	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_36095	chr16	7259695	7259856	+	5.54243	NA	intron (NM_018723, intron 4 of 15)	L2a|LINE|L2	-122976	NM_145891	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_30089	chr14	45737832	45737990	+	5.54243	NA	Intergenic	Intergenic	-15306	NM_018353	55320	Hs.732769	NM_018353	HPRD:12629	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82945	chr5	145283509	145283738	+	5.54243	NA	Intergenic	Intergenic	-31092	NM_001080516	643226	Hs.570895	NM_001080516	ENSG00000204928	GRXCR2	DFNB101	glutaredoxin, cysteine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_28753	chr13	97777849	97777937	+	5.54243	NA	Intergenic	Intergenic	53983	NR_125725	103625683	Hs.679591	NR_125725		LINC00456	-	long intergenic non-protein coding RNA 456	ncRNA
19-PTNLD28-TUMOR_peak_105776	chr9	122272328	122272442	+	5.54243	NA	Intergenic	Intergenic	-140646	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_25823	chr12	101673513	101673605	+	5.54243	NA	promoter-TSS (NM_014503)	promoter-TSS (NM_014503)	-346	NM_014503	27340	Hs.295732	NM_014503	HPRD:09928	UTP20	DRIM	UTP20, small subunit (SSU) processome component, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_54981	chr2	112529891	112529979	+	5.54243	NA	exon (NM_022662, exon 47 of 48)	exon (NM_022662, exon 47 of 48)	111806	NM_022662	64682	Hs.436527	NM_022662	HPRD:09769	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_45338	chr18	37773066	37773154	+	5.54243	NA	Intergenic	L1PA2|LINE|L1	126860	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
19-PTNLD28-TUMOR_peak_77476	chr4	148000460	148000574	+	5.54243	NA	Intergenic	Intergenic	-133483	NM_031956	83894	Hs.378893	NM_031956	HPRD:14866	TTC29	NYD-SP14|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
19-PTNLD28-TUMOR_peak_56616	chr2	161211689	161211866	+	5.54243	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	52616	NR_039946	100616364		NR_039946		MIR4785	-	microRNA 4785	ncRNA
19-PTNLD28-TUMOR_peak_108566	chrX	64910407	64910512	+	5.54243	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	22948	NM_002444	4478	Hs.87752	NM_002444	HPRD:02399	MSN	HEL70	moesin	protein-coding
19-PTNLD28-TUMOR_peak_53881	chr2	86471092	86471313	+	5.54243	NA	intron (NM_001164732, intron 3 of 4)	intron (NM_001164732, intron 3 of 4)	44646	NM_016622	51318	Hs.433439	NM_016622	HPRD:14755	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding
19-PTNLD28-TUMOR_peak_20176	chr11	76536491	76536666	+	5.54038	NA	Intergenic	Intergenic	-35339	NM_018367	55331	Hs.23862	NM_018367		ACER3	APHC|PHCA	alkaline ceramidase 3	protein-coding
19-PTNLD28-TUMOR_peak_48157	chr19	19600282	19600385	+	5.54038	NA	intron (NM_001300946, intron 1 of 10)	intron (NM_001300946, intron 1 of 10)	24184	NM_001300946	54815	Hs.118964	NM_017660	HPRD:11741	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_102754	chr9	34074393	34074481	+	5.53790	NA	Intergenic	Intergenic	-25490	NM_018449	55833	Hs.493739	NM_018449	HPRD:06748	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_34969	chr15	85113746	85113861	+	5.53790	NA	promoter-TSS (NR_038274)	promoter-TSS (NR_038274)	-77	NR_038274	100506874	Hs.150824	NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
19-PTNLD28-TUMOR_peak_34799	chr15	81293138	81293506	+	5.53790	NA	promoter-TSS (NM_022566)	promoter-TSS (NM_022566)	27	NM_022566	59274	Hs.513071	NM_022566	HPRD:11300	MESDC1	-	mesoderm development candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_84010	chr5	172260757	172260946	+	5.53790	NA	promoter-TSS (NM_001031711)	promoter-TSS (NM_001031711)	-372	NM_001031711	57222	Hs.509163	NM_020462	HPRD:13836	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
19-PTNLD28-TUMOR_peak_58523	chr2	220433885	220433973	+	5.53790	NA	intron (NM_001173408, intron 1 of 8)	intron (NM_001173408, intron 1 of 8)	2339	NM_001173408	23363	Hs.526594	NM_015311	ENSG00000124006	OBSL1	-	obscurin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_70033	chr3	119013769	119013892	+	5.53790	NA	exon (NM_020754, exon 1 of 12)	exon (NM_020754, exon 1 of 12)	610	NM_020754	57514	Hs.668218	NM_020754	HPRD:16697	ARHGAP31	AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
19-PTNLD28-TUMOR_peak_41443	chr17	39694355	39694537	+	5.53790	NA	Intergenic	Intergenic	-9805	NM_002276	3880	Hs.654568	NM_002276	HPRD:01007	KRT19	CK19|K19|K1CS	keratin 19	protein-coding
19-PTNLD28-TUMOR_peak_1614	chr1	25943103	25943191	+	5.53790	NA	promoter-TSS (NM_020379)	promoter-TSS (NM_020379)	-812	NM_001289010	57134	Hs.197043	NM_020379		MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase, alpha, class 1C, member 1	protein-coding
19-PTNLD28-TUMOR_peak_49937	chr19	50684553	50684671	+	5.53790	NA	Intergenic	Intergenic	-18074	NM_152358	126123	Hs.414175	NM_152358	HPRD:14578	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
19-PTNLD28-TUMOR_peak_40178	chr17	9988459	9988585	+	5.53717	NA	intron (NM_201433, intron 1 of 13)	MLT1N2|LTR|ERVL-MaLR	-48458	NM_201432	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_70323	chr3	124320258	124320356	+	5.53717	NA	intron (NM_007064, intron 1 of 26)	intron (NM_007064, intron 1 of 26)	16801	NM_007064	8997	Hs.8004	NM_003947	HPRD:06859	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
19-PTNLD28-TUMOR_peak_41935	chr17	45308516	45308608	+	5.53717	NA	Intergenic	AluJb|SINE|Alu	21848	NM_002476	4635	Hs.463300	NM_002476	HPRD:01176	MYL4	ALC1|AMLC|GT1	myosin, light chain 4, alkali; atrial, embryonic	protein-coding
19-PTNLD28-TUMOR_peak_20303	chr11	79125789	79125879	+	5.53717	NA	intron (NM_001098816, intron 1 of 33)	intron (NM_001098816, intron 1 of 33)	7436	NR_049841	100847000		NR_049841	miRBase:MI0019133	MIR5579	-	microRNA 5579	ncRNA
19-PTNLD28-TUMOR_peak_44460	chr18	8705395	8705634	+	5.53717	NA	intron (NR_120598, intron 1 of 1)	CpG	2105	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_58915	chr2	234323125	234323235	+	5.53717	NA	intron (NM_152879, intron 3 of 29)	intron (NM_152879, intron 3 of 29)	26380	NM_003648	8527	Hs.471675	NM_003648	HPRD:03492	DGKD	DGKdelta|dgkd-2	diacylglycerol kinase, delta 130kDa	protein-coding
19-PTNLD28-TUMOR_peak_2832	chr1	41849136	41849231	+	5.53649	NA	TTS (NM_001291281)	TTS (NM_001291281)	21580	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_16583	chr11	1579736	1580003	+	5.53575	NA	intron (NM_004420, intron 4 of 6)	intron (NM_004420, intron 4 of 6)	13281	NM_004420	1850	Hs.41688	NM_004420	HPRD:03617	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
19-PTNLD28-TUMOR_peak_9394	chr1	203105191	203105312	+	5.52355	NA	intron (NM_001048230, intron 2 of 2)	intron (NM_001048230, intron 2 of 2)	8415	NM_001048230	134	Hs.77867	NM_000674	HPRD:00042	ADORA1	RDC7	adenosine A1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_26969	chr12	124961847	124961983	+	5.52318	NA	intron (NM_001077261, intron 5 of 47)	THE1C|LTR|ERVL-MaLR	90095	NM_006312	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_41262	chr17	36908153	36908260	+	5.52318	NA	promoter-TSS (NM_002795)	promoter-TSS (NM_002795)	-760	NR_104194	5691	Hs.82793	NM_002795	HPRD:03709	PSMB3	HC10-II	proteasome (prosome, macropain) subunit, beta type, 3	protein-coding
19-PTNLD28-TUMOR_peak_68220	chr3	50384738	50384943	+	5.52318	NA	TTS (NM_006545)	TTS (NM_006545)	-1684	NM_015896	51364	Hs.526735	NM_015896	HPRD:06145	ZMYND10	BLU|CILD22|FLU	zinc finger, MYND-type containing 10	protein-coding
19-PTNLD28-TUMOR_peak_47809	chr19	16442750	16442838	+	5.52108	NA	Intergenic	Intergenic	7143	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_49849	chr19	50009951	50010056	+	5.51903	NA	Intergenic	Intergenic	-5533	NM_001136019	2217	Hs.111903	NM_004107	HPRD:03257	FCGRT	FCRN|alpha-chain	Fc fragment of IgG, receptor, transporter, alpha	protein-coding
19-PTNLD28-TUMOR_peak_3258	chr1	47158193	47158304	+	5.51903	NA	TTS (NR_038828)	TTS (NR_038828)	18540	NR_038827	100130197	Hs.568643	NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20223	chr11	77751171	77751361	+	5.51903	NA	intron (NM_001203262, intron 1 of 2)	intron (NM_001203262, intron 1 of 2)	5971	NM_001282406	65987	Hs.709780	NM_023930	HPRD:13764	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_8803	chr1	184006170	184006528	+	5.51903	NA	exon (NM_015101, exon 1 of 12)	exon (NM_015101, exon 1 of 12)	514	NM_015101	23127	Hs.387995	NM_015101	HPRD:13583	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_91945	chr7	33534280	33534519	+	5.51903	NA	intron (NM_198428, intron 19 of 22)	L2c|LINE|L2	365247	NM_014451	27241	Hs.372360	NM_014451	HPRD:16262	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
19-PTNLD28-TUMOR_peak_47262	chr19	10920144	10920361	+	5.51903	NA	intron (NM_001005361, intron 14 of 20)	intron (NM_001005361, intron 14 of 20)	7920	NR_029586	406976		NR_029586	miRBase:MI0000242	MIR199A1	MIR-199-s|MIRN199A1	microRNA 199a-1	ncRNA
19-PTNLD28-TUMOR_peak_60788	chr20	35067991	35068089	+	5.51853	NA	intron (NM_014902, intron 4 of 12)	intron (NM_014902, intron 4 of 12)	-21778	NM_001042486	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_38284	chr16	67049253	67049346	+	5.51853	NA	Intergenic	Intergenic	-13751	NM_001755	865	Hs.460988	NM_001755	HPRD:00418	CBFB	PEBP2B	core-binding factor, beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_52787	chr2	54013604	54013692	+	5.51853	NA	promoter-TSS (NM_001127397)	promoter-TSS (NM_001127397)	337	NM_001201965	51130	Hs.40763	NM_016115	HPRD:05769	ASB3	ASB-3	ankyrin repeat and SOCS box containing 3	protein-coding
19-PTNLD28-TUMOR_peak_93122	chr7	72338397	72338600	+	5.51853	NA	intron (NR_003666, intron 1 of 5)	intron (NR_003666, intron 1 of 5)	1158	NR_003666	441251	Hs.591819	NM_001034844	ENSG00000179994	SPDYE7P	-	speedy/RINGO cell cycle regulator family member E7, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_46458	chr19	70313	70401	+	5.51632	NA	intron (NR_033266, intron 1 of 2)	CpG	609	NR_033266	375690	Hs.521961	NR_033266		WASH5P	-	WAS protein family homolog 5 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_40395	chr17	17589392	17589505	+	5.51528	NA	intron (NM_030665, intron 1 of 5)	L2b|LINE|L2	4661	NM_030665	10743	Hs.655395	NM_030665	HPRD:07406	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
19-PTNLD28-TUMOR_peak_12676	chr10	30025371	30025496	+	5.51528	NA	promoter-TSS (NM_003174)	promoter-TSS (NM_003174)	-703	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_81303	chr5	98175247	98175436	+	5.51478	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-66553	NR_033932	503569	Hs.586188	NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25635	chr12	95044127	95044385	+	5.51478	NA	promoter-TSS (NM_020698)	promoter-TSS (NM_020698)	82	NM_020698	57458	Hs.370410	NM_020698	HPRD:15519	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
19-PTNLD28-TUMOR_peak_30461	chr14	56207864	56207980	+	5.51478	NA	Intergenic	Intergenic	-25041	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_2383	chr1	36464683	36464771	+	5.51478	NA	intron (NM_024852, intron 5 of 18)	AluSx|SINE|Alu	68044	NM_177422	192669	Hs.657659	NM_024852	HPRD:09558	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
19-PTNLD28-TUMOR_peak_2255	chr1	34438693	34438867	+	5.51478	NA	intron (NM_052896, intron 3 of 69)	intron (NM_052896, intron 3 of 69)	104223	NR_038372	402779	Hs.666207	NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_27124	chr12	128139066	128139154	+	5.51478	NA	Intergenic	Intergenic	-18098	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
19-PTNLD28-TUMOR_peak_43211	chr17	70370546	70370634	+	5.51478	NA	Intergenic	Intergenic	218353	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_78556	chr5	107161	107328	+	5.51478	NA	Intergenic	Intergenic	-33129	NM_052909	153478	Hs.535800	NM_052909		PLEKHG4B	-	pleckstrin homology domain containing, family G (with RhoGef domain) member 4B	protein-coding
19-PTNLD28-TUMOR_peak_27479	chr13	24554217	24554470	+	5.51478	NA	intron (NM_001286792, intron 1 of 14)	AluYc|SINE|Alu	578	NM_001286792	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_66246	chr3	4753956	4754056	+	5.51478	NA	intron (NM_001099952, intron 39 of 58)	intron (NM_001099952, intron 39 of 58)	39268	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_82198	chr5	133406491	133406749	+	5.51478	NA	Intergenic	L1ME4a|LINE|L1	-43782	NM_003202	6932	Hs.573153	NM_003202	HPRD:01797	TCF7	TCF-1	transcription factor 7 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_63802	chr21	44328662	44328751	+	5.51478	NA	intron (NM_021075, intron 3 of 3)	intron (NM_021075, intron 3 of 3)	15328	NM_021075	4731	Hs.473937	NM_021075		NDUFV3	CI-10k|CI-9KD	NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa	protein-coding
19-PTNLD28-TUMOR_peak_18473	chr11	47459465	47459563	+	5.51478	NA	3' UTR (NM_005055, exon 8 of 8)	3' UTR (NM_005055, exon 8 of 8)	11216	NM_032645	5913	Hs.81218	NM_005055	HPRD:03353	RAPSN	RAPSYN|RNF205	receptor-associated protein of the synapse	protein-coding
19-PTNLD28-TUMOR_peak_75132	chr4	47915957	47916265	+	5.51296	NA	exon (NM_152995, exon 2 of 23)	exon (NM_152995, exon 2 of 23)	463	NM_001278624	152518	Hs.646325	NM_152995	HPRD:11025	NFXL1	CDZFP|HOZFP|OZFP|URCC5	nuclear transcription factor, X-box binding-like 1	protein-coding
19-PTNLD28-TUMOR_peak_16720	chr11	3190923	3191120	+	5.51296	NA	Intergenic	Intergenic	-4439	NM_145638	114879	Hs.436166	NM_020896	HPRD:09475	OSBPL5	OBPH1|ORP5	oxysterol binding protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_24350	chr12	52739619	52739754	+	5.51296	NA	Intergenic	Intergenic	18720	NM_001300810	3891	Hs.182507	NM_002283	HPRD:04139	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
19-PTNLD28-TUMOR_peak_37638	chr16	47495672	47496014	+	5.51296	NA	promoter-TSS (NM_030790)	promoter-TSS (NM_030790)	633	NM_001031835	5257	Hs.78060	NM_000293	HPRD:01407	PHKB	-	phosphorylase kinase, beta	protein-coding
19-PTNLD28-TUMOR_peak_56714	chr2	163697273	163697361	+	5.51296	NA	Intergenic	Intergenic	-2060	NM_033272	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_78577	chr5	316416	316540	+	5.51296	NA	intron (NM_020731, intron 1 of 11)	intron (NM_020731, intron 1 of 11)	12187	NM_001242412	57491	Hs.50823	NM_020731	HPRD:07356	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
19-PTNLD28-TUMOR_peak_15925	chr10	120860341	120860692	+	5.51296	NA	Intergenic	MER68|LTR|ERVL	-3095	NM_207009	404636	Hs.434241	NM_207009		FAM45A	-	family with sequence similarity 45, member A	protein-coding
19-PTNLD28-TUMOR_peak_53666	chr2	80059354	80059457	+	5.51085	NA	intron (NM_001282597, intron 3 of 18)	intron (NM_001282597, intron 3 of 18)	34304	NR_107047	102465877		NR_107047		MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
19-PTNLD28-TUMOR_peak_35025	chr15	85897801	85897955	+	5.51085	NA	Intergenic	Intergenic	-25969	NM_007200	11214	Hs.459211	NM_006738	HPRD:05253	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A kinase (PRKA) anchor protein 13	protein-coding
19-PTNLD28-TUMOR_peak_99604	chr8	97274670	97274859	+	5.51085	NA	promoter-TSS (NM_015942)	promoter-TSS (NM_015942)	650	NM_001290225	9791	Hs.292579	NM_014754		PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_9924	chr1	211433573	211433711	+	5.51085	NA	intron (NM_018254, intron 1 of 10)	CpG	353	NM_018254	55758	Hs.356399	NM_018254	HPRD:08338	RCOR3	-	REST corepressor 3	protein-coding
19-PTNLD28-TUMOR_peak_47879	chr19	17354863	17355020	+	5.50922	NA	intron (NM_005234, intron 1 of 3)	intron (NM_005234, intron 1 of 3)	1210	NM_005234	2063	Hs.466148	NM_005234	HPRD:00583	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2, group F, member 6	protein-coding
19-PTNLD28-TUMOR_peak_60201	chr20	23331700	23331788	+	5.50922	NA	intron (NM_013248, intron 1 of 1)	CpG	371	NM_013248	29107	Hs.516933	NM_013248	HPRD:16159	NXT1	MTR2|P15	nuclear transport factor 2-like export factor 1	protein-coding
19-PTNLD28-TUMOR_peak_48438	chr19	30334225	30334314	+	5.50903	NA	Intergenic	Intergenic	31368	NM_001238	898	Hs.244723	NM_001238	HPRD:00455	CCNE1	CCNE	cyclin E1	protein-coding
19-PTNLD28-TUMOR_peak_64703	chr22	24113302	24113395	+	5.50774	NA	Intergenic	Intergenic	-1688	NM_005940	4320	Hs.143751	NM_005940	HPRD:01705	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11 (stromelysin 3)	protein-coding
19-PTNLD28-TUMOR_peak_1362	chr1	22251273	22251493	+	5.50774	NA	intron (NM_001291860, intron 1 of 96)	L2c|LINE|L2	12407	NM_001291860	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_26084	chr12	107745626	107745826	+	5.50663	NA	intron (NM_001018072, intron 1 of 16)	intron (NM_001018072, intron 1 of 16)	33529	NM_001018072	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_46243	chr18	71958527	71958648	+	5.50402	NA	intron (NM_001914, intron 1 of 5)	CpG	664	NM_001914	1528	Hs.465413	NM_001914	HPRD:08941	CYB5A	CYB5|MCB5	cytochrome b5 type A (microsomal)	protein-coding
19-PTNLD28-TUMOR_peak_53050	chr2	64372385	64372473	+	5.50402	NA	promoter-TSS (NM_020651)	promoter-TSS (NM_020651)	-824	NM_020651	57162	Hs.7886	NM_020651	HPRD:17834	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_64741	chr22	24552407	24552499	+	5.50402	NA	intron (NM_012295, intron 29 of 36)	CpG	-24991	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_37410	chr16	32320845	32321217	+	5.50402	NA	Intergenic	Intergenic	-19729	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22405	chr12	1099585	1099714	+	5.50402	NA	promoter-TSS (NM_001297419)	promoter-TSS (NM_001297419)	-442	NM_001297419	5893	Hs.410355	NM_134422	HPRD:11855	RAD52	-	RAD52 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_7096	chr1	154685625	154685778	+	5.50402	NA	intron (NM_002249, intron 7 of 7)	intron (NM_002249, intron 7 of 7)	-85245	NM_001025107	103	Hs.12341	NM_001111	HPRD:07528	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_11009	chr1	234741787	234741879	+	5.50225	NA	3' UTR (NM_182972, exon 2 of 2)	3' UTR (NM_182972, exon 2 of 2)	3438	NM_182972	359948	Hs.350268	NM_182972	HPRD:17160	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_9360	chr1	202640700	202640789	+	5.49967	NA	intron (NM_177402, intron 1 of 8)	L1MEg|LINE|L1	-28163	NM_001136504	127833	Hs.25422	NM_177402	HPRD:02520	SYT2	SytII	synaptotagmin II	protein-coding
19-PTNLD28-TUMOR_peak_29952	chr14	37074283	37074378	+	5.49967	NA	Intergenic	Intergenic	-22544	NM_014360	26257	Hs.234763	NM_014360		NKX2-8	NKX2.8|NKX2H|Nkx2-9	NK2 homeobox 8	protein-coding
19-PTNLD28-TUMOR_peak_45300	chr18	35566719	35566936	+	5.49967	NA	Intergenic	Intergenic	329729	NR_036202	100422857		NR_036202	miRBase:MI0015847	MIR4318	-	microRNA 4318	ncRNA
19-PTNLD28-TUMOR_peak_24071	chr12	48981192	48981387	+	5.49967	NA	Intergenic	L1PA13|LINE|L1	-17460	NM_002289	3906	Hs.72938	NM_002289	HPRD:01024	LALBA	-	lactalbumin, alpha-	protein-coding
19-PTNLD28-TUMOR_peak_80192	chr5	61101053	61101212	+	5.49967	NA	Intergenic	Intergenic	-69607	NR_105000	100506526	Hs.662277	NR_105000	ENSG00000251575	LOC100506526	-	uncharacterized LOC100506526	ncRNA
19-PTNLD28-TUMOR_peak_78934	chr5	11267520	11267608	+	5.49967	NA	intron (NM_001288717, intron 8 of 20)	intron (NM_001288717, intron 8 of 20)	321465	NM_001288715	1501	Hs.314543	NM_001332	HPRD:09181	CTNND2	GT24|NPRAP	catenin (cadherin-associated protein), delta 2	protein-coding
19-PTNLD28-TUMOR_peak_50162	chr19	53338324	53338492	+	5.49967	NA	Intergenic	LTR13A|LTR|ERVK	-13486	NR_036599	7576	Hs.732407	NM_006969	HPRD:18507	ZNF28	KOX24	zinc finger protein 28	protein-coding
19-PTNLD28-TUMOR_peak_107916	chrX	36449973	36450087	+	5.49967	NA	intron (NR_110412, intron 2 of 7)	intron (NR_110412, intron 2 of 7)	8345	NR_110412	101928627	Hs.590831	NR_110412	ENSG00000226484	LOC101928627	-	uncharacterized LOC101928627	ncRNA
19-PTNLD28-TUMOR_peak_62867	chr21	18699783	18699936	+	5.49967	NA	Intergenic	L1PA2|LINE|L1	-111349	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	C21orf37	-	chromosome 21 open reading frame 37	ncRNA
19-PTNLD28-TUMOR_peak_16289	chr10	131770063	131770209	+	5.49967	NA	Intergenic	CpG-3433	-8045	NM_001005463	253738	Hs.591374	NM_001005463	HPRD:16818	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding
19-PTNLD28-TUMOR_peak_23472	chr12	26446580	26446879	+	5.49967	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	98223	NM_005086	8082	Hs.183428	NM_005086		SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
19-PTNLD28-TUMOR_peak_38530	chr16	70185883	70186024	+	5.49967	NA	intron (NM_017990, intron 17 of 18)	intron (NM_017990, intron 17 of 18)	-21975	NM_173619	283971	Hs.556045	NM_173619	HPRD:14587	CLEC18C	MRCL|MRCL3	C-type lectin domain family 18, member C	protein-coding
19-PTNLD28-TUMOR_peak_17527	chr11	18831947	18832100	+	5.49967	NA	Intergenic	LTR16A1|LTR|ERVL	-17755	NM_001278236	84867	Hs.79092	NM_006906	HPRD:01472	PTPN5	PTPSTEP|STEP	protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)	protein-coding
19-PTNLD28-TUMOR_peak_100965	chr8	131291449	131291575	+	5.49967	NA	intron (NM_018482, intron 3 of 29)	intron (NM_018482, intron 3 of 29)	17267	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_1217	chr1	19600516	19600702	+	5.49967	NA	promoter-TSS (NR_040289)	promoter-TSS (NR_040289)	-41	NR_040289	246181	Hs.662342	NM_201252	HPRD:12240	AKR7L	AFAR3|AFB1-AR3|AKR7A4	aldo-keto reductase family 7-like	pseudo
19-PTNLD28-TUMOR_peak_38573	chr16	70794766	70794854	+	5.49967	NA	intron (NR_034083, intron 2 of 5)	intron (NR_034083, intron 2 of 5)	5847	NR_034083	100130894	Hs.678899	NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_84578	chr5	180377459	180377639	+	5.49967	NA	3' UTR (NM_001159708, exon 7 of 7)	3' UTR (NM_001159708, exon 7 of 7)	-38296	NM_197975	10917	Hs.225949	NM_006707	HPRD:08393	BTNL3	BTN9.1|BTNLR	butyrophilin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_4240	chr1	68280011	68280165	+	5.49967	NA	intron (NM_018841, intron 1 of 3)	intron (NM_018841, intron 1 of 3)	-17883	NR_040077	100289178	Hs.677603	NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14677	chr10	86108783	86108940	+	5.49967	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	20516	NM_001284241	54462	Hs.461988	NM_018999	HPRD:13832	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine-rich protein 2	protein-coding
19-PTNLD28-TUMOR_peak_100267	chr8	119004353	119004485	+	5.49967	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	119639	NM_000127	2131	Hs.492618	NM_000127		EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_45758	chr18	48332216	48332382	+	5.49967	NA	intron (NM_001127174, intron 3 of 5)	intron (NM_001127174, intron 3 of 5)	14135	NM_001127176	83876	Hs.30495	NM_031939	HPRD:16276	MRO	B29|C18orf3	maestro	protein-coding
19-PTNLD28-TUMOR_peak_60477	chr20	30777449	30777785	+	5.49711	NA	non-coding (NR_002781, exon 1 of 1)	non-coding (NR_002781, exon 1 of 1)	546	NR_002781	128854	Hs.647447	NR_002781	HPRD:18235	TSPY26P	TSPYL3|bA392M18.1	testis specific protein, Y-linked 26, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_106560	chr9	136023093	136023185	+	5.49711	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	1468	NM_001042368	5900	Hs.106185	NM_006266	HPRD:03371	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
19-PTNLD28-TUMOR_peak_2688	chr1	40282569	40282776	+	5.48972	NA	Intergenic	Intergenic	-28139	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
19-PTNLD28-TUMOR_peak_68333	chr3	52273102	52273218	+	5.48972	NA	promoter-TSS (NM_007284)	promoter-TSS (NM_007284)	23	NM_007284	11344	Hs.436439	NM_007284	HPRD:08464	TWF2	A6RP|A6r|PTK9L	twinfilin actin-binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_10461	chr1	226110311	226110426	+	5.48972	NA	promoter-TSS (NR_106799)	promoter-TSS (NR_106799)	-526	NR_106799	102466270		NR_106799		MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
19-PTNLD28-TUMOR_peak_15785	chr10	116391915	116392003	+	5.48953	NA	intron (NM_001003407, intron 1 of 21)	intron (NM_001003407, intron 1 of 21)	26099	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_53335	chr2	70313779	70313908	+	5.48953	NA	promoter-TSS (NM_006196)	promoter-TSS (NM_006196)	304	NR_033872	400960	Hs.683864	NR_033872	ENSG00000179818	PCBP1-AS1	-	PCBP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36560	chr16	16507812	16507960	+	5.48894	NA	Intergenic	Intergenic	34784	NM_001282511	101059953	Hs.636569	NM_001282511		NPIPA8	LCR16a9	nuclear pore complex interacting protein family, member A8	protein-coding
19-PTNLD28-TUMOR_peak_32466	chr15	20650004	20650120	+	5.48894	NA	intron (NR_036432, intron 16 of 25)	intron (NR_036432, intron 16 of 25)	61371	NR_036432	283755	Hs.608918	NM_001024682	HPRD:18766	HERC2P3	D15F37S4	hect domain and RLD 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_76703	chr4	114998489	114998607	+	5.48894	NA	Intergenic	MER68-int|LTR|ERVL	-97670	NM_024590	79642	Hs.22895	NM_024590	HPRD:08034	ARSJ	-	arylsulfatase family, member J	protein-coding
19-PTNLD28-TUMOR_peak_4687	chr1	87606992	87607080	+	5.48894	NA	intron (NR_026989, intron 2 of 2)	intron (NR_026989, intron 2 of 2)	9427	NR_026985	339524	Hs.306423	NM_207357	HPRD:14169	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
19-PTNLD28-TUMOR_peak_35813	chr16	2531150	2531253	+	5.48859	NA	intron (NM_020705, intron 1 of 6)	intron (NM_020705, intron 1 of 6)	6054	NM_020705	57465	Hs.353087	NM_020705	ENSG00000162065	TBC1D24	DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6	TBC1 domain family, member 24	protein-coding
19-PTNLD28-TUMOR_peak_62502	chr20	61036278	61036410	+	5.48859	NA	Intergenic	Intergenic	14682	NM_080473	140628	Hs.352250	NM_080473	HPRD:17029	GATA5	GATAS|bB379O24.1	GATA binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_37459	chr16	33178202	33178337	+	5.48859	NA	Intergenic	Intergenic	-27314	NR_110897	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_20161	chr11	76400325	76400515	+	5.48859	NA	intron (NR_024042, intron 18 of 20)	L2b|LINE|L2	-18629	NM_001128922	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_12008	chr10	11758286	11758409	+	5.48859	NA	Intergenic	Intergenic	-26009	NM_024693	79746	Hs.22242	NM_024693	HPRD:10930	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_14547	chr10	80911554	80911703	+	5.48859	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	82836	NM_020338	57178	Hs.193118	NM_020338	HPRD:12115	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger, MIZ-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83862	chr5	170042226	170042407	+	5.48859	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	111276	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46748	chr19	3713124	3713212	+	5.48859	NA	intron (NM_001267560, intron 1 of 20)	intron (NM_001267560, intron 1 of 20)	4833	NM_001267560	27134	Hs.25527	NM_014428	HPRD:18194	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
19-PTNLD28-TUMOR_peak_84459	chr5	178720372	178720484	+	5.48859	NA	intron (NM_021599, intron 2 of 10)	intron (NM_021599, intron 2 of 10)	52003	NM_021599	9509	Hs.23871	NM_014244	HPRD:05173	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif, 2	protein-coding
19-PTNLD28-TUMOR_peak_74490	chr4	10076440	10076594	+	5.48859	NA	3' UTR (NM_017491, exon 15 of 15)	3' UTR (NM_017491, exon 15 of 15)	3799	NR_036090	100423011		NR_036090		MIR3138	-	microRNA 3138	ncRNA
19-PTNLD28-TUMOR_peak_59023	chr2	236656486	236656655	+	5.48859	NA	intron (NM_001037131, intron 5 of 17)	intron (NM_001037131, intron 5 of 17)	253837	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_62426	chr20	58514901	58515033	+	5.48719	NA	promoter-TSS (NM_022106)	promoter-TSS (NM_022106)	385	NM_006242	5509	Hs.42215	NM_006242	HPRD:04507	PPP1R3D	PPP1R6	protein phosphatase 1, regulatory subunit 3D	protein-coding
19-PTNLD28-TUMOR_peak_42766	chr17	60548568	60548672	+	5.48444	NA	Intergenic	Intergenic	-7766	NM_006852	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_35755	chr16	2022603	2022835	+	5.48444	NA	intron (NM_006453, intron 1 of 21)	intron (NM_006453, intron 1 of 21)	655	NM_006453	10607	Hs.513267	NM_006453	HPRD:09327	TBL3	SAZD|UTP13	transducin (beta)-like 3	protein-coding
19-PTNLD28-TUMOR_peak_17720	chr11	27240247	27240436	+	5.48444	NA	promoter-TSS (NR_125768)	promoter-TSS (NR_125768)	-26	NR_125768	103695435	Hs.196133	NR_125766		BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_94262	chr7	99686820	99687038	+	5.48444	NA	exon (NM_006833, exon 2 of 10)	exon (NM_006833, exon 2 of 10)	346	NM_006833	10980	Hs.15591	NM_006833	HPRD:16735	COPS6	CSN6|MOV34-34KD	COP9 signalosome subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_17852	chr11	32458028	32458129	+	5.48443	NA	promoter-TSS (NM_000378)	promoter-TSS (NM_000378)	493	NR_120546	51352	Hs.567499	NM_015855		WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_79838	chr5	52280186	52280372	+	5.48443	NA	Intergenic	L2b|LINE|L2	-4877	NM_002203	3673	Hs.482077	NM_002203	HPRD:01893	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_71110	chr3	136703805	136704006	+	5.48408	NA	intron (NM_144717, intron 3 of 6)	intron (NM_144717, intron 3 of 6)	27198	NM_144717	53833	Hs.61232	NM_144717	HPRD:14594	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_100215	chr8	117690608	117690776	+	5.48408	NA	intron (NM_003756, intron 2 of 7)	SVA_D|Other|Other	77370	NM_003756	8667	Hs.492599	NM_003756		EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_59522	chr20	2804817	2805030	+	5.48408	NA	Intergenic	SVA_E|Other|Other	7947	NM_001167670	100288797	Hs.664180	NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
19-PTNLD28-TUMOR_peak_86549	chr6	30923466	30923695	+	5.48408	NA	Intergenic	CpG	14803	NM_080870	135656	Hs.631993	NM_080870	HPRD:16073	DPCR1	PBLT	diffuse panbronchiolitis critical region 1	protein-coding
19-PTNLD28-TUMOR_peak_40907	chr17	28995671	28995811	+	5.48408	NA	Intergenic	Intergenic	-40885	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_74622	chr4	15900621	15900881	+	5.48408	NA	Intergenic	LTR45B|LTR|ERV1	39612	NM_005130	9982	Hs.1690	NM_005130	HPRD:06371	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_47103	chr19	9089338	9089443	+	5.48408	NA	exon (NM_024690, exon 1 of 84)	exon (NM_024690, exon 1 of 84)	2628	NM_024690	94025	Hs.432676	NM_024690	ENSG00000181143	MUC16	CA125	mucin 16, cell surface associated	protein-coding
19-PTNLD28-TUMOR_peak_25373	chr12	76424748	76424878	+	5.48408	NA	exon (NM_007350, exon 1 of 2)	exon (NM_007350, exon 1 of 2)	743	NM_007350	22822	Hs.602085	NM_007350		PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology-like domain, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_101566	chr8	143897871	143897985	+	5.48408	NA	Intergenic	Intergenic	-18289	NM_002066	2765	Hs.661218	NM_002066	HPRD:03844	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
19-PTNLD28-TUMOR_peak_47769	chr19	15982475	15982588	+	5.48408	NA	Intergenic	Intergenic	26399	NM_001082	8529	Hs.558423	NM_001082	HPRD:05112	CYP4F2	CPF2	cytochrome P450, family 4, subfamily F, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_34687	chr15	78354411	78354539	+	5.47932	NA	intron (NM_144572, intron 1 of 12)	Helitron3Na_Mam|RC|Helitron	15519	NM_144572	23102	Hs.567426	NM_015079	HPRD:08310	TBC1D2B	-	TBC1 domain family, member 2B	protein-coding
19-PTNLD28-TUMOR_peak_54251	chr2	96535790	96535878	+	5.47932	NA	Intergenic	L1PA3|LINE|L1	-43105	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
19-PTNLD28-TUMOR_peak_61211	chr20	42745449	42745537	+	5.47932	NA	intron (NM_020433, intron 3 of 5)	intron (NM_020433, intron 3 of 5)	70725	NM_175913	57158	Hs.441737	NM_020433	HPRD:12006	JPH2	CMH17|JP-2|JP2	junctophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_10962	chr1	234261176	234261276	+	5.47932	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-88731	NM_001300845	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_943	chr1	14764133	14764232	+	5.47932	NA	Intergenic	Intergenic	-161031	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_79142	chr5	17019582	17019670	+	5.47932	NA	Intergenic	AluJb|SINE|Alu	-83241	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_19926	chr11	73000069	73000443	+	5.47568	NA	intron (NM_001277208, intron 1 of 1)	intron (NM_001277208, intron 1 of 1)	17069	NM_001277208	5031	Hs.16362	NM_004154	HPRD:03906	P2RY6	P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding
19-PTNLD28-TUMOR_peak_65070	chr22	30708172	30708409	+	5.47331	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	14665	NM_001204240	83874	Hs.655273	NM_031937	HPRD:18162	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_66127	chr22	50970028	50970265	+	5.47264	NA	exon (NM_001014440, exon 3 of 7)	exon (NM_001014440, exon 3 of 7)	862	NM_001014440	440836	Hs.531314	NM_001014440	HPRD:18640	ODF3B	ODF3L3	outer dense fiber of sperm tails 3B	protein-coding
19-PTNLD28-TUMOR_peak_95239	chr7	129610846	129610941	+	5.47264	NA	Intergenic	Intergenic	-18093	NM_003344	7328	Hs.643548	NM_003344	HPRD:03052	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin-conjugating enzyme E2H	protein-coding
19-PTNLD28-TUMOR_peak_104861	chr9	100274049	100274285	+	5.47219	NA	intron (NM_003275, intron 1 of 9)	L3|LINE|CR1	10246	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_78380	chr4	186638324	186638506	+	5.47176	NA	intron (NM_001145672, intron 1 of 20)	intron (NM_001145672, intron 1 of 20)	58651	NM_001145673	8470	Hs.619806	NM_003603	HPRD:12473	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_79133	chr5	16935609	16935745	+	5.46881	NA	intron (NM_012334, intron 1 of 40)	CpG	708	NM_012334	4651	Hs.481720	NM_012334	HPRD:03283	MYO10	-	myosin X	protein-coding
19-PTNLD28-TUMOR_peak_181	chr1	1714039	1714336	+	5.46806	NA	Intergenic	Intergenic	-2679	NM_001198994	65220	Hs.654792	NM_023018	HPRD:16907	NADK	dJ283E3.1	NAD kinase	protein-coding
19-PTNLD28-TUMOR_peak_28074	chr13	45011328	45011431	+	5.46514	NA	promoter-TSS (NM_006022)	promoter-TSS (NM_006022)	11	NM_001243797	8848	Hs.436383	NM_006022		TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_33162	chr15	40542380	40542476	+	5.46514	NA	TTS (NM_001039905)	TTS (NM_001039905)	2682	NM_001039905	644809	Hs.631718	NM_001039905	ENSG00000176753	C15orf56	-	chromosome 15 open reading frame 56	protein-coding
19-PTNLD28-TUMOR_peak_58420	chr2	219235322	219235569	+	5.46514	NA	Intergenic	Intergenic	-2820	NR_110573	101928513	Hs.512386	NR_110573		CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55537	chr2	127858482	127858679	+	5.46514	NA	intron (NM_139343, intron 1 of 18)	MIRb|SINE|MIR	6323	NM_139343	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_60558	chr20	31865375	31865668	+	5.46514	NA	Intergenic	Intergenic	-5420	NM_033197	92747	Hs.65551	NM_033197	HPRD:12740	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_66833	chr3	14502265	14502415	+	5.46514	NA	intron (NR_103507, intron 6 of 13)	intron (NR_103507, intron 6 of 13)	58264	NM_001134368	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_22295	chr11	133894777	133894898	+	5.46514	NA	Intergenic	Intergenic	-7330	NR_027276	100128239	Hs.423734	NR_027276	ENSG00000204241	LOC100128239	-	uncharacterized LOC100128239	ncRNA
19-PTNLD28-TUMOR_peak_105420	chr9	114360241	114360341	+	5.46514	NA	intron (NM_001146108, intron 1 of 9)	intron (NM_001146108, intron 1 of 9)	1420	NM_012212	22949	Hs.584864	NM_012212	HPRD:03173	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_26259	chr12	110662475	110662697	+	5.46514	NA	Intergenic	L3|LINE|CR1	-56446	NM_001681	488	Hs.506759	NM_001681	HPRD:00161	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
19-PTNLD28-TUMOR_peak_99138	chr8	70746096	70746184	+	5.46490	NA	promoter-TSS (NM_001146009)	promoter-TSS (NM_001146009)	-515	NM_001146008	81796	Hs.152460	NM_030958	HPRD:15399	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15	solute carrier organic anion transporter family, member 5A1	protein-coding
19-PTNLD28-TUMOR_peak_9759	chr1	206718267	206718355	+	5.45792	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-12181	NM_182665	83593	Hs.497579	NM_031437	HPRD:06117	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
19-PTNLD28-TUMOR_peak_106740	chr9	139294140	139294397	+	5.45792	NA	Intergenic	CpG	-1379	NM_003086	6621	Hs.113265	NM_003086	HPRD:04146	SNAPC4	PTFalpha|SNAP190	small nuclear RNA activating complex, polypeptide 4, 190kDa	protein-coding
19-PTNLD28-TUMOR_peak_62413	chr20	58090219	58090352	+	5.45792	NA	Intergenic	MER66A|LTR|ERV1	-62279	NM_001199505	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_85274	chr6	10419471	10419587	+	5.45792	NA	intron (NM_001042425, intron 1 of 6)	CpG	268	NM_001042425	7020	Hs.519880	NM_003220	HPRD:00128	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	protein-coding
19-PTNLD28-TUMOR_peak_24947	chr12	63545765	63546017	+	5.45792	NA	5' UTR (NM_000706, exon 1 of 2)	5' UTR (NM_000706, exon 1 of 2)	699	NM_000706	552	Hs.2131	NM_000706		AVPR1A	AVPR V1a|AVPR1|V1aR	arginine vasopressin receptor 1A	protein-coding
19-PTNLD28-TUMOR_peak_71043	chr3	135459135	135459477	+	5.45792	NA	Intergenic	Intergenic	-225209	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_96249	chr7	149788997	149789085	+	5.45792	NA	Intergenic	AluY|SINE|Alu	211028	NM_001164459	653857	Hs.664579	NM_001164458	ENSG00000106526	ACTR3C	ARP11	ARP3 actin-related protein 3 homolog C (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_58333	chr2	217930806	217930894	+	5.45792	NA	Intergenic	MamRep564|Unknown|Unknown	-206068	NM_003284	7141	Hs.3017	NM_003284	HPRD:01830	TNP1	TP1	transition protein 1 (during histone to protamine replacement)	protein-coding
19-PTNLD28-TUMOR_peak_66097	chr22	50639832	50639924	+	5.45740	NA	exon (NM_031454, exon 1 of 9)	exon (NM_031454, exon 1 of 9)	470	NM_031454	83642	Hs.365405	NM_031454	HPRD:07449	SELO	-	selenoprotein O	protein-coding
19-PTNLD28-TUMOR_peak_40253	chr17	13505250	13505351	+	5.45740	NA	promoter-TSS (NM_006042)	promoter-TSS (NM_006042)	-56	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_31169	chr14	72181103	72181209	+	5.45740	NA	intron (NM_001284246, intron 14 of 20)	intron (NM_001284246, intron 14 of 20)	126868	NM_001284247	26037	Hs.654657	NM_015556	HPRD:11559	SIPA1L1	E6TP1	signal-induced proliferation-associated 1 like 1	protein-coding
19-PTNLD28-TUMOR_peak_108108	chrX	45668151	45668252	+	5.45740	NA	Intergenic	Intergenic	42719	NR_125365	401585	Hs.633348	NR_125365		LOC401585	-	uncharacterized LOC401585	ncRNA
19-PTNLD28-TUMOR_peak_12877	chr10	34023548	34023889	+	5.45740	NA	Intergenic	Intergenic	37890	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
19-PTNLD28-TUMOR_peak_33672	chr15	56608782	56608907	+	5.45740	NA	Intergenic	L1PA2|LINE|L1	-48778	NM_001286449	374618	Hs.511476	NM_198524	HPRD:15493	TEX9	-	testis expressed 9	protein-coding
19-PTNLD28-TUMOR_peak_33458	chr15	45997983	45998074	+	5.45740	NA	Intergenic	MIRb|SINE|MIR	71090	NM_021199	58472	Hs.511251	NM_021199	HPRD:18102	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_67632	chr3	39621389	39621517	+	5.45740	NA	Intergenic	HERVH-int|LTR|ERV1	77896	NM_001278323	4336	Hs.121333	NM_182935	HPRD:02973	MOBP	-	myelin-associated oligodendrocyte basic protein	protein-coding
19-PTNLD28-TUMOR_peak_88858	chr6	98864799	98864919	+	5.45740	NA	Intergenic	L1PA2|LINE|L1	392452	NR_031579	100302164		NR_031579	miRBase:MI0003939	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
19-PTNLD28-TUMOR_peak_55516	chr2	126583482	126583708	+	5.45740	NA	Intergenic	L1PA3|LINE|L1	-829916	NM_001256584	2995	Hs.59138	NM_002101	HPRD:00193	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
19-PTNLD28-TUMOR_peak_11457	chr1	245543379	245543471	+	5.45740	NA	intron (NM_018012, intron 3 of 14)	intron (NM_018012, intron 3 of 14)	225138	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_88609	chr6	86333531	86333621	+	5.45740	NA	intron (NM_001159674, intron 7 of 11)	MIR|SINE|MIR	17593	NM_001159675	10492	Hs.571177	NM_006372	HPRD:06734	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_48123	chr19	19096198	19096306	+	5.45740	NA	Intergenic	Intergenic	-44211	NM_004838	9454	Hs.720208	NM_004838	HPRD:07270	HOMER3	HOMER-3|VESL3	homer homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_34154	chr15	68291350	68291438	+	5.45740	NA	Intergenic	Intergenic	-55178	NM_016166	8554	Hs.162458	NM_016166	HPRD:16029	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT, 1	protein-coding
19-PTNLD28-TUMOR_peak_66589	chr3	11196294	11196459	+	5.45740	NA	intron (NM_001098212, intron 1 of 1)	CpG	162	NM_001098212	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_41735	chr17	42733449	42733839	+	5.45740	NA	promoter-TSS (NM_001145080)	promoter-TSS (NM_001145080)	-118	NM_001145080	284071	Hs.349758	NM_001033659	HPRD:18768	C17orf104	-	chromosome 17 open reading frame 104	protein-coding
19-PTNLD28-TUMOR_peak_15372	chr10	104456545	104456743	+	5.45740	NA	intron (NM_004311, intron 3 of 5)	Tigger3a|DNA|TcMar-Tigger	17546	NM_004311	403	Hs.182215	NM_004311	HPRD:05260	ARL3	ARFL3	ADP-ribosylation factor-like 3	protein-coding
19-PTNLD28-TUMOR_peak_99003	chr8	66528950	66529038	+	5.45740	NA	intron (NM_018120, intron 3 of 6)	SVA_C|Other|Other	17458	NM_001286702	55156	Hs.269542	NM_018120	HPRD:16506	ARMC1	Arcp	armadillo repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_52801	chr2	54411185	54411402	+	5.45740	NA	intron (NM_138448, intron 3 of 3)	Zaphod|DNA|hAT-Tip100	68883	NM_138448	98	Hs.516173	NM_138448	HPRD:00028	ACYP2	ACYM|ACYP	acylphosphatase 2, muscle type	protein-coding
19-PTNLD28-TUMOR_peak_80360	chr5	67038482	67038619	+	5.45740	NA	Intergenic	L1PA2|LINE|L1	-447154	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_34964	chr15	84981893	84981996	+	5.45740	NA	Intergenic	Intergenic	4628	NR_120378	102724034	Hs.694638	NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
19-PTNLD28-TUMOR_peak_79718	chr5	43074172	43074265	+	5.45740	NA	intron (NR_102752, intron 2 of 2)	HERVH48-int|LTR|ERV1	-6677	NR_104651	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
19-PTNLD28-TUMOR_peak_15987	chr10	122738964	122739347	+	5.45740	NA	intron (NR_049879, intron 4 of 4)	CpG	-128464	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9945	chr1	211854235	211854349	+	5.45740	NA	Intergenic	Intergenic	-5320	NM_001204182	4751	Hs.153704	NM_002497	HPRD:04953	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA-related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_58224	chr2	213930685	213930817	+	5.45740	NA	intron (NM_001079526, intron 4 of 8)	intron (NM_001079526, intron 4 of 8)	84307	NM_016260	22807	Hs.604950	NM_016260	HPRD:05872	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2 (Helios)	protein-coding
19-PTNLD28-TUMOR_peak_79318	chr5	31910400	31910488	+	5.45740	NA	intron (NM_178140, intron 1 of 23)	AluSx|SINE|Alu	25821	NR_036241	100422874		NR_036241	miRBase:MI0015887	MIR4279	-	microRNA 4279	ncRNA
19-PTNLD28-TUMOR_peak_1855	chr1	28697016	28697131	+	5.45699	NA	intron (NM_001048183, intron 1 of 13)	intron (NM_001048183, intron 1 of 13)	980	NM_001048183	65979	Hs.225641	NM_023923	HPRD:07816	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
19-PTNLD28-TUMOR_peak_54976	chr2	112463834	112463933	+	5.45447	NA	Intergenic	Intergenic	177858	NM_022662	64682	Hs.436527	NM_022662	HPRD:09769	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_58852	chr2	232645681	232645813	+	5.45447	NA	promoter-TSS (NM_001282951)	promoter-TSS (NM_001282951)	290	NM_002601	5147	Hs.516808	NM_002601	HPRD:04056	PDE6D	JBTS22|PDED	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding
19-PTNLD28-TUMOR_peak_11681	chr10	3110689	3110956	+	5.45447	NA	promoter-TSS (NM_001242339)	promoter-TSS (NM_001242339)	3	NM_001242339	5214	Hs.26010	NM_002627	HPRD:01384	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
19-PTNLD28-TUMOR_peak_42769	chr17	60556184	60556276	+	5.45416	NA	promoter-TSS (NM_001284333)	promoter-TSS (NM_001284333)	-156	NM_006852	11011	Hs.445078	NM_006852		TLK2	HsHPK|PKU-ALPHA	tousled-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_42257	chr17	48624703	48624792	+	5.45416	NA	intron (NM_001258372, intron 1 of 15)	intron (NM_001258372, intron 1 of 15)	297	NM_001258372	64847	Hs.103147	NM_022827	HPRD:07961	SPATA20	SSP411|Tisp78	spermatogenesis associated 20	protein-coding
19-PTNLD28-TUMOR_peak_95502	chr7	134376727	134376951	+	5.45416	NA	Intergenic	G-rich|Low_complexity|Low_complexity	45308	NM_001293085	669	Hs.198365	NM_001724	HPRD:01961	BPGM	DPGM	2,3-bisphosphoglycerate mutase	protein-coding
19-PTNLD28-TUMOR_peak_62889	chr21	19046662	19046750	+	5.44553	NA	Intergenic	Intergenic	-61438	NM_001130914	10950	Hs.473420	NM_006806	HPRD:10415	BTG3	ANA|TOB5|TOB55|TOFA	BTG family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_103009	chr9	37801336	37801556	+	5.44553	NA	intron (NM_024345, intron 1 of 6)	CpG	663	NM_024345	79269	Hs.118394	NM_024345	HPRD:08319	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
19-PTNLD28-TUMOR_peak_49796	chr19	49561035	49561123	+	5.44553	NA	Intergenic	Intergenic	-2082	NM_033142	94027	Hs.681647	NM_033142	HPRD:12310	CGB7	CG-beta-a|CGB6	chorionic gonadotropin, beta polypeptide 7	protein-coding
19-PTNLD28-TUMOR_peak_38782	chr16	75600195	75600300	+	5.44553	NA	promoter-TSS (NM_007285)	promoter-TSS (NM_007285)	-2	NM_007285	11345	Hs.461379	NM_007285	HPRD:16246	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA(A) receptor-associated protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_108739	chrX	72163450	72163552	+	5.44405	NA	promoter-TSS (NR_026595)	promoter-TSS (NR_026595)	88	NR_026594	653687	Hs.592230	NR_026594		FAM226B	CXorf50B|LINC00246B|NCRNA00246B	family with sequence similarity 226, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_94561	chr7	102354278	102354366	+	5.44405	NA	Intergenic	Intergenic	-35077	NR_026879	222234	Hs.202543	NM_147194		FAM185A	-	family with sequence similarity 185, member A	protein-coding
19-PTNLD28-TUMOR_peak_56890	chr2	170590660	170591007	+	5.44405	NA	intron (NM_144711, intron 1 of 3)	CpG	477	NM_144711	151230	Hs.655150	NM_144711	HPRD:11320	KLHL23	DITHP	kelch-like family member 23	protein-coding
19-PTNLD28-TUMOR_peak_71455	chr3	143513538	143513639	+	5.44405	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	53785	NM_173653	285195	Hs.302257	NM_173653	HPRD:12226	SLC9A9	AUTS16|NHE9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	protein-coding
19-PTNLD28-TUMOR_peak_76304	chr4	95679225	95679581	+	5.44405	NA	promoter-TSS (NR_121610)	promoter-TSS (NR_121610)	275	NM_001203	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_108738	chrX	71996935	71997046	+	5.44405	NA	Intergenic	Intergenic	5494	NR_120499	100129407	Hs.512473	NR_034116	ENSG00000204119	LINC00684	DMRTC1-AS1	long intergenic non-protein coding RNA 684	ncRNA
19-PTNLD28-TUMOR_peak_74959	chr4	38206429	38206552	+	5.44405	NA	Intergenic	L3|LINE|CR1	84915	NM_001253915	23216	Hs.176503	NM_015173	HPRD:18161	TBC1D1	TBC|TBC1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_22214	chr11	130700231	130700338	+	5.44405	NA	Intergenic	Intergenic	31721	NR_125383	100507431	Hs.375101	NR_125383		LOC100507431	-	uncharacterized LOC100507431	ncRNA
19-PTNLD28-TUMOR_peak_13949	chr10	69146835	69147060	+	5.44405	NA	intron (NM_001291133, intron 6 of 8)	L1PA3|LINE|L1	278496	NM_001127384	29119	Hs.21375	NM_013266	HPRD:09639	CTNNA3	ARVD13|VR22	catenin (cadherin-associated protein), alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_7857	chr1	164717512	164717616	+	5.44405	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	26314	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
19-PTNLD28-TUMOR_peak_78563	chr5	217795	217892	+	5.44392	NA	promoter-TSS (NM_001294332)	promoter-TSS (NM_001294332)	454	NM_145265	133957	Hs.294145	NM_145265		CCDC127	-	coiled-coil domain containing 127	protein-coding
19-PTNLD28-TUMOR_peak_84376	chr5	177505258	177505492	+	5.44182	NA	Intergenic	L3|LINE|CR1	-35181	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_36711	chr16	20953725	20953994	+	5.44182	NA	intron (NM_017539, intron 58 of 61)	intron (NM_017539, intron 58 of 61)	41784	NM_001128302	57149	Hs.745012	NM_020424	HPRD:14254	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_48457	chr19	31209778	31209866	+	5.44182	NA	Intergenic	Intergenic	346494	NM_014717	9745	Hs.378901	NM_014717	HPRD:15825	ZNF536	-	zinc finger protein 536	protein-coding
19-PTNLD28-TUMOR_peak_20521	chr11	89597145	89597603	+	5.44182	NA	intron (NR_049875, intron 2 of 4)	CpG	11811	NM_001164397	642446	Hs.730588	NM_001164397		TRIM64B	-	tripartite motif containing 64B	protein-coding
19-PTNLD28-TUMOR_peak_5957	chr1	120026520	120026670	+	5.44182	NA	Intergenic	LTR19A|LTR|ERV1	-23231	NM_000862	3283	Hs.364941	NM_000862	HPRD:04920	HSD3B1	3BETAHSD|HSD3B|HSDB3|HSDB3A|I|SDR11E1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding
19-PTNLD28-TUMOR_peak_96693	chr7	156796891	156796979	+	5.44182	NA	TTS (NM_001165255)	TTS (NM_001165255)	5194	NM_001165255	3110	Hs.37035	NM_005515	HPRD:00874	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_70932	chr3	133386085	133386182	+	5.44182	NA	Intergenic	AluJr4|SINE|Alu	-5396	NM_007027	11073	Hs.593379	NM_007027	HPRD:09678	TOPBP1	TOP2BP1	topoisomerase (DNA) II binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42082	chr17	46869563	46869738	+	5.44182	NA	intron (NM_001130918, intron 8 of 15)	intron (NM_001130918, intron 8 of 15)	2036	NM_173623	284076	Hs.91930	NM_173623	HPRD:08763	TTLL6	TTL.6	tubulin tyrosine ligase-like family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_39377	chr16	88729928	88730098	+	5.44040	NA	promoter-TSS (NM_002461)	promoter-TSS (NM_002461)	232	NR_024399	197187	Hs.499548	NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30803	chr14	65229003	65229103	+	5.43791	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	23351	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_73356	chr3	194032982	194033070	+	5.43791	NA	Intergenic	Intergenic	-2433	NR_024480	100131551	Hs.128066	NR_024480	ENSG00000214145	LINC00887	-	long intergenic non-protein coding RNA 887	ncRNA
19-PTNLD28-TUMOR_peak_81481	chr5	108745331	108745441	+	5.43570	NA	intron (NM_014819, intron 1 of 9)	CpG	289	NM_014819	9867	Hs.483036	NM_014819	HPRD:11436	PJA2	Neurodap1|RNF131	praja ring finger 2, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_85486	chr6	13423231	13423322	+	5.43295	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-14907	NM_001242630	54438	Hs.484686	NM_018988	HPRD:13574	GFOD1	ADG-90|C6orf114	glucose-fructose oxidoreductase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_59110	chr2	238540148	238540236	+	5.43295	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	3968	NM_001137550	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_95097	chr7	127848636	127848731	+	5.43295	NA	TTS (NR_029596)	TTS (NR_029596)	758	NR_029596	406917		NR_029596	miRBase:MI0000252	MIR129-1	MIR-129b|MIRN129-1	microRNA 129-1	ncRNA
19-PTNLD28-TUMOR_peak_26321	chr12	111760189	111760412	+	5.43087	NA	exon (NM_015267, exon 18 of 22)	exon (NM_015267, exon 18 of 22)	18354	NR_106818	102465455		NR_106818		MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
19-PTNLD28-TUMOR_peak_10718	chr1	229339307	229339395	+	5.43087	NA	Intergenic	Intergenic	-67458	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_62281	chr20	56044893	56045108	+	5.43087	NA	Intergenic	Intergenic	54923	NM_001269041	140690	Hs.131543	NM_080618	HPRD:09512	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor (zinc finger protein)-like	protein-coding
19-PTNLD28-TUMOR_peak_49610	chr19	47960713	47960861	+	5.43087	NA	exon (NM_015063, exon 3 of 10)	exon (NM_015063, exon 3 of 10)	14520	NM_015063	6543	Hs.172884	NM_015063	HPRD:15990	SLC8A2	NCX2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_23006	chr12	10344251	10344339	+	5.43087	NA	3' UTR (NM_153022, exon 4 of 4)	3' UTR (NM_153022, exon 4 of 4)	12738	NM_153022	120939	Hs.226422	NM_153022	HPRD:08709	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
19-PTNLD28-TUMOR_peak_34686	chr15	78343035	78343129	+	5.43087	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	26912	NM_144572	23102	Hs.567426	NM_015079	HPRD:08310	TBC1D2B	-	TBC1 domain family, member 2B	protein-coding
19-PTNLD28-TUMOR_peak_7528	chr1	159793320	159793423	+	5.43087	NA	Intergenic	Intergenic	-3108	NM_020125	56833	Hs.438683	NM_020125	HPRD:09429	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
19-PTNLD28-TUMOR_peak_16722	chr11	3193611	3193699	+	5.42807	NA	Intergenic	Intergenic	-7073	NM_145638	114879	Hs.436166	NM_020896	HPRD:09475	OSBPL5	OBPH1|ORP5	oxysterol binding protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_38869	chr16	79204848	79204936	+	5.42807	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	429730	NM_005360	4094	Hs.134859	NM_005360	HPRD:01518	MAF	CCA4|c-MAF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_70240	chr3	123401799	123401949	+	5.42807	NA	intron (NM_053025, intron 19 of 33)	intron (NM_053025, intron 19 of 33)	-6617	NR_046629	100873940	Hs.667316	NR_046629		MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_93039	chr7	69063091	69063182	+	5.42807	NA	promoter-TSS (NM_015570)	promoter-TSS (NM_015570)	-655	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
19-PTNLD28-TUMOR_peak_11438	chr1	245266658	245266748	+	5.42807	NA	intron (NM_001143943, intron 6 of 6)	intron (NM_001143943, intron 6 of 6)	-51584	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_24570	chr12	54785097	54785271	+	5.42807	NA	promoter-TSS (NM_001130967)	promoter-TSS (NM_001130967)	-95	NM_001130968	25946	Hs.505653	NM_015481	HPRD:16448	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
19-PTNLD28-TUMOR_peak_79369	chr5	32842971	32843216	+	5.42807	NA	Intergenic	Intergenic	-104456	NR_033832	340113	Hs.434404	NR_033832	ENSG00000248279	LOC340113	-	uncharacterized LOC340113	ncRNA
19-PTNLD28-TUMOR_peak_13510	chr10	49813096	49813261	+	5.42807	NA	promoter-TSS (NM_021226)	promoter-TSS (NM_021226)	-2	NM_021226	58504	Hs.655672	NM_021226	HPRD:12476	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
19-PTNLD28-TUMOR_peak_6982	chr1	153569700	153569860	+	5.42807	NA	Intergenic	MIRc|SINE|MIR	15734	NM_080388	140576	Hs.515714	NM_080388	HPRD:11529	S100A16	DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
19-PTNLD28-TUMOR_peak_93040	chr7	69063338	69063658	+	5.42807	NA	promoter-TSS (NM_015570)	promoter-TSS (NM_015570)	-407	NM_001127232	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_54254	chr2	96571643	96571731	+	5.42807	NA	Intergenic	Intergenic	-78958	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
19-PTNLD28-TUMOR_peak_106460	chr9	133803438	133803599	+	5.42807	NA	intron (NM_001145106, intron 3 of 7)	intron (NM_001145106, intron 3 of 7)	10721	NM_032843	84929	Hs.133205	NM_032843	HPRD:16895	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_75145	chr4	48271389	48271517	+	5.42807	NA	intron (NM_003215, intron 1 of 17)	CpG	361	NM_003215	7006	Hs.479670	NM_003215	HPRD:02786	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_29055	chr13	110972147	110972269	+	5.42807	NA	intron (NM_001846, intron 3 of 47)	intron (NM_001846, intron 3 of 47)	12577	NM_001846	1284	Hs.508716	NM_001846	HPRD:00355	COL4A2	ICH|POREN2	collagen, type IV, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_30811	chr14	65346465	65346889	+	5.42807	NA	Intergenic	CpG	-34402	NM_001204064	91612	Hs.731537	NM_145165	HPRD:12262	CHURC1	C14orf52|chch	churchill domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_6786	chr1	151492155	151492264	+	5.42756	NA	intron (NM_020770, intron 2 of 20)	intron (NM_020770, intron 2 of 20)	8347	NM_020770	57530	Hs.591464	NM_020770	HPRD:10827	CGN	-	cingulin	protein-coding
19-PTNLD28-TUMOR_peak_48978	chr19	39618892	39619075	+	5.42631	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	2563	NM_001014832	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_96707	chr7	157074915	157075003	+	5.42380	NA	Intergenic	Intergenic	-54751	NM_005494	10049	Hs.490745	NM_005494	HPRD:07107	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ (Hsp40) homolog, subfamily B, member 6	protein-coding
19-PTNLD28-TUMOR_peak_20747	chr11	96041047	96041199	+	5.42380	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-33479	NR_036125	100422991		NR_036125	miRBase:MI0014197	MIR1260B	-	microRNA 1260b	ncRNA
19-PTNLD28-TUMOR_peak_56893	chr2	170680946	170681037	+	5.42279	NA	intron (NM_001293186, intron 2 of 7)	intron (NM_001293186, intron 2 of 7)	450	NM_014168	29081	Hs.470553	NM_014168	ENSG00000138382	METTL5	HSPC133	methyltransferase like 5	protein-coding
19-PTNLD28-TUMOR_peak_106797	chr9	139886778	139886931	+	5.42279	NA	promoter-TSS (NM_183241)	promoter-TSS (NM_183241)	-16	NM_183241	286257	Hs.409582	NM_183241	HPRD:14163	C9orf142	-	chromosome 9 open reading frame 142	protein-coding
19-PTNLD28-TUMOR_peak_85638	chr6	16229775	16229921	+	5.41816	NA	Intergenic	HERV3-int|LTR|ERV1	-8963	NM_006877	2766	Hs.484741	NM_006877	HPRD:00754	GMPR	GMPR1	guanosine monophosphate reductase	protein-coding
19-PTNLD28-TUMOR_peak_105943	chr9	124975899	124976020	+	5.41816	NA	exon (NM_001242333, exon 8 of 9)	exon (NM_001242333, exon 8 of 9)	8060	NM_001242335	26468	Hs.103137	NM_014368	HPRD:10498	LHX6	LHX6.1	LIM homeobox 6	protein-coding
19-PTNLD28-TUMOR_peak_22808	chr12	6889347	6889446	+	5.41812	NA	Intergenic	Intergenic	7726	NM_002286	3902	Hs.409523	NM_002286	HPRD:01077	LAG3	CD223	lymphocyte-activation gene 3	protein-coding
19-PTNLD28-TUMOR_peak_67579	chr3	38495775	38496015	+	5.41812	NA	intron (NM_001106, intron 1 of 10)	CpG	105	NM_001106	93	Hs.174273	NM_001106	HPRD:04106	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor, type IIB	protein-coding
19-PTNLD28-TUMOR_peak_22747	chr12	6471146	6471409	+	5.41812	NA	exon (NM_001159575, exon 4 of 13)	exon (NM_001159575, exon 4 of 13)	13113	NM_001159576	6337	Hs.591047	NM_001038	HPRD:02575	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel, non-voltage-gated 1 alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_2835	chr1	41876951	41877086	+	5.41812	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	49415	NM_001291281	100132074	Hs.559677	NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
19-PTNLD28-TUMOR_peak_44930	chr18	21407311	21407411	+	5.41728	NA	exon (NM_001127717, exon 23 of 74)	exon (NM_001127717, exon 23 of 74)	-45623	NM_001127718	3909	Hs.436367	NM_000227	HPRD:02883	LAMA3	BM600|E170|LAMNA|LOCS|lama3a	laminin, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_66334	chr3	7247769	7247864	+	5.41573	NA	intron (NM_181874, intron 2 of 10)	intron (NM_181874, intron 2 of 10)	329155	NR_046606	100873937	Hs.570608	NR_046606		GRM7-AS1	-	GRM7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_23193	chr12	13892723	13892811	+	5.41573	NA	intron (NM_000834, intron 3 of 12)	intron (NM_000834, intron 3 of 12)	240255	NM_000834	2904	Hs.654430	NM_000834		GRIN2B	GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	protein-coding
19-PTNLD28-TUMOR_peak_43634	chr17	75229951	75230204	+	5.41573	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-47415	NM_001113491	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_79160	chr5	17249444	17249591	+	5.41573	NA	intron (NM_006317, intron 1 of 1)	intron (NM_006317, intron 1 of 1)	31847	NM_006317	10409	Hs.201641	NM_006317	HPRD:08389	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_73946	chr4	3033139	3033243	+	5.41573	NA	intron (NM_005307, intron 11 of 13)	L2|LINE|L2	-43046	NM_002111	3064	Hs.518450	NM_002111	HPRD:00883	HTT	HD|IT15	huntingtin	protein-coding
19-PTNLD28-TUMOR_peak_72596	chr3	179529548	179529718	+	5.41573	NA	exon (NM_001256753, exon 9 of 13)	exon (NM_001256753, exon 9 of 13)	-86349	NR_110059	101928790	Hs.667247	NR_110059	ENSG00000244302	LOC101928790	-	uncharacterized LOC101928790	ncRNA
19-PTNLD28-TUMOR_peak_59246	chr2	241366410	241366498	+	5.41573	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-8661	NM_002081	2817	Hs.328232	NM_002081	HPRD:02671	GPC1	glypican	glypican 1	protein-coding
19-PTNLD28-TUMOR_peak_73287	chr3	192717243	192717518	+	5.41573	NA	Intergenic	HERVH-int|LTR|ERV1	-81430	NM_178496	151963	Hs.151443	NM_178496	HPRD:14092	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_23408	chr12	24714995	24715083	+	5.41573	NA	intron (NM_152989, intron 1 of 17)	CpG	344	NM_152989	6660	Hs.657542	NM_006940	HPRD:18086	SOX5	L-SOX5|L-SOX5B|L-SOX5F	SRY (sex determining region Y)-box 5	protein-coding
19-PTNLD28-TUMOR_peak_1479	chr1	24047267	24047391	+	5.41573	NA	Intergenic	L2b|LINE|L2	-22527	NM_003198	6924	Hs.15535	NM_003198	HPRD:02873	TCEB3	EloA|SIII|SIII p110|TCEB3A	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	protein-coding
19-PTNLD28-TUMOR_peak_49188	chr19	42250644	42250790	+	5.41573	NA	Intergenic	Intergenic	-8711	NM_002483	4680	Hs.466814	NM_002483	HPRD:01233	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)	protein-coding
19-PTNLD28-TUMOR_peak_4429	chr1	77497080	77497208	+	5.41573	NA	intron (NM_030965, intron 2 of 4)	intron (NM_030965, intron 2 of 4)	-28684	NR_106978	102466995		NR_106978		MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
19-PTNLD28-TUMOR_peak_101314	chr8	139183621	139183766	+	5.41573	NA	intron (NM_015912, intron 11 of 19)	L2a|LINE|L2	325372	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_103227	chr9	42695770	42695858	+	5.41573	NA	Intergenic	L1PA3|LINE|L1	-22252	NM_199244	349334	Hs.712520	NM_199244	HPRD:17013	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4-like 4	protein-coding
19-PTNLD28-TUMOR_peak_14241	chr10	73572589	73572677	+	5.41191	NA	exon (NM_022124, exon 66 of 68)	exon (NM_022124, exon 66 of 68)	993	NM_001171936	64072	Hs.656032	NM_022124	HPRD:05699	CDH23	CDHR23|USH1D	cadherin-related 23	protein-coding
19-PTNLD28-TUMOR_peak_75730	chr4	76861574	76861820	+	5.41191	NA	intron (NM_001042402, intron 1 of 8)	CpG-19891	469	NM_014435	27163	Hs.437365	NM_014435	HPRD:12122	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
19-PTNLD28-TUMOR_peak_84980	chr6	4370493	4370581	+	5.40920	NA	Intergenic	Intergenic	234231	NR_103764	100507506	Hs.665936	NR_103764	ENSG00000234817	LOC100507506	-	uncharacterized LOC100507506	ncRNA
19-PTNLD28-TUMOR_peak_10356	chr1	224253276	224253377	+	5.40920	NA	Intergenic	Intergenic	-48463	NR_049764	23219	Hs.64691	NM_015176	HPRD:12367	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
19-PTNLD28-TUMOR_peak_5613	chr1	113316508	113316741	+	5.40920	NA	Intergenic	SVA_F|Other|Other	53435	NM_001004440	284467	Hs.439116	NM_182759	HPRD:16877	FAM19A3	TAFA-3|TAFA3	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3	protein-coding
19-PTNLD28-TUMOR_peak_31934	chr14	97748209	97748387	+	5.40920	NA	Intergenic	MLT2B4|LTR|ERVL	-176855	NR_110165	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_65058	chr22	30624601	30624805	+	5.40920	NA	Intergenic	Intergenic	18137	NM_001257135	3976	Hs.2250	NM_002309	HPRD:08869	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
19-PTNLD28-TUMOR_peak_5482	chr1	110936667	110936767	+	5.40920	NA	Intergenic	MER68|LTR|ERVL	-3013	NM_001201549	9122	Hs.351306	NM_004696	HPRD:04855	SLC16A4	MCT4|MCT5	solute carrier family 16, member 4	protein-coding
19-PTNLD28-TUMOR_peak_108112	chrX	45710942	45711065	+	5.40920	NA	promoter-TSS (NR_125365)	promoter-TSS (NR_125365)	-83	NR_125365	401585	Hs.633348	NR_125365		LOC401585	-	uncharacterized LOC401585	ncRNA
19-PTNLD28-TUMOR_peak_5897	chr1	118174969	118175071	+	5.40920	NA	Intergenic	Intergenic	26416	NM_017709	54855	Hs.356216	NM_017709	HPRD:13312	FAM46C	-	family with sequence similarity 46, member C	protein-coding
19-PTNLD28-TUMOR_peak_93539	chr7	76786520	76786612	+	5.40920	NA	intron (NM_020879, intron 1 of 18)	intron (NM_020879, intron 1 of 18)	34632	NM_020879	57639	Hs.113940	NM_020879	HPRD:11150	CCDC146	-	coiled-coil domain containing 146	protein-coding
19-PTNLD28-TUMOR_peak_30570	chr14	59333321	59333409	+	5.40920	NA	intron (NR_110547, intron 1 of 5)	L2b|LINE|L2	38359	NR_110547	102723742	Hs.232734	NR_110547		LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
19-PTNLD28-TUMOR_peak_10263	chr1	223297034	223297287	+	5.40920	NA	intron (NM_003268, intron 5 of 5)	intron (NM_003268, intron 5 of 5)	19464	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_17896	chr11	33467595	33467774	+	5.40920	NA	Intergenic	AluSz|SINE|Alu	-96193	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
19-PTNLD28-TUMOR_peak_94815	chr7	108025256	108025485	+	5.40920	NA	intron (NM_005010, intron 2 of 27)	MIRc|SINE|MIR	71471	NM_001193584	4897	Hs.21422	NM_005010	HPRD:07207	NRCAM	-	neuronal cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_87280	chr6	39016339	39016472	+	5.40920	NA	promoter-TSS (NM_002062)	promoter-TSS (NM_002062)	-152	NM_002062	2740	Hs.389103	NM_002062	HPRD:00677	GLP1R	-	glucagon-like peptide 1 receptor	protein-coding
19-PTNLD28-TUMOR_peak_25287	chr12	71833579	71834057	+	5.40920	NA	non-coding (NR_110596, exon 1 of 20)	non-coding (NR_110596, exon 1 of 20)	268	NM_001277226	8549	Hs.658889	NM_003667	HPRD:05979	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine-rich repeat containing G protein-coupled receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_49071	chr19	40909467	40909820	+	5.40719	NA	exon (NM_020956, exon 5 of 6)	exon (NM_020956, exon 5 of 6)	9628	NM_181882	57716	Hs.205457	NM_020956	HPRD:05758	PRX	CMT4F	periaxin	protein-coding
19-PTNLD28-TUMOR_peak_71172	chr3	138328479	138328567	+	5.40719	NA	intron (NM_018147, intron 1 of 4)	intron (NM_018147, intron 1 of 4)	604	NM_018147	55179	Hs.173438	NM_018147	HPRD:16874	FAIM	FAIM1	Fas apoptotic inhibitory molecule	protein-coding
19-PTNLD28-TUMOR_peak_24488	chr12	53887238	53887336	+	5.40719	NA	intron (NM_001193511, intron 1 of 13)	intron (NM_001193511, intron 1 of 13)	6157	NM_006301	7786	Hs.713539	NM_006301	HPRD:02709	MAP3K12	DLK|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
19-PTNLD28-TUMOR_peak_105911	chr9	124498140	124498252	+	5.40719	NA	intron (NM_032552, intron 3 of 16)	intron (NM_032552, intron 3 of 16)	-6868	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_66008	chr22	46858727	46858863	+	5.40484	NA	intron (NM_014246, intron 2 of 34)	intron (NM_014246, intron 2 of 34)	74272	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_45463	chr18	43409377	43409673	+	5.40484	NA	intron (NM_213602, intron 1 of 5)	intron (NM_213602, intron 1 of 5)	3980	NM_213602	284266	Hs.287692	NM_213602	HPRD:13011	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig-like lectin 15	protein-coding
19-PTNLD28-TUMOR_peak_12367	chr10	22909316	22909423	+	5.40484	NA	intron (NM_005028, intron 1 of 9)	MIRc|SINE|MIR	94134	NM_005028	5305	Hs.57079	NM_005028	HPRD:11931	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_61671	chr20	47998209	47998347	+	5.40484	NA	intron (NM_004975, intron 1 of 1)	intron (NM_004975, intron 1 of 1)	100903	NM_004975	3745	Hs.84244	NM_004975		KCNB1	DRK1|KV2.1|h-DRK1	potassium voltage-gated channel, Shab-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_2775	chr1	41255444	41255532	+	5.40484	NA	intron (NM_004700, intron 1 of 13)	intron (NM_004700, intron 1 of 13)	5804	NM_004700	9132	Hs.473058	NM_004700	HPRD:04641	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel, KQT-like subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_39085	chr16	84401702	84401807	+	5.40080	NA	promoter-TSS (NM_001286527)	promoter-TSS (NM_001286527)	-375	NM_014861	9914	Hs.6168	NM_014861	HPRD:13812	ATP2C2	SPCA2	ATPase, Ca++ transporting, type 2C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_37687	chr16	48645729	48645856	+	5.40080	NA	Intergenic	Intergenic	-1672	NM_153029	9683	Hs.511839	NM_153029	HPRD:08109	N4BP1	-	NEDD4 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41709	chr17	42401701	42401791	+	5.40069	NA	intron (NM_001143780, intron 1 of 11)	CpG	471	NM_016016	51629	Hs.744880	NM_016016	HPRD:13040	SLC25A39	CGI69	solute carrier family 25, member 39	protein-coding
19-PTNLD28-TUMOR_peak_94971	chr7	120497169	120497343	+	5.39827	NA	intron (NM_012338, intron 1 of 7)	CpG	921	NM_012338	23554	Hs.16529	NM_012338	HPRD:15509	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
19-PTNLD28-TUMOR_peak_68258	chr3	50843639	50843745	+	5.39827	NA	intron (NM_004947, intron 2 of 52)	L1M2c|LINE|L1	131020	NM_004947	1795	Hs.476284	NM_004947	HPRD:10341	DOCK3	MOCA|PBP	dedicator of cytokinesis 3	protein-coding
19-PTNLD28-TUMOR_peak_26936	chr12	124395460	124395718	+	5.39827	NA	intron (NM_207437, intron 58 of 77)	AluJo|SINE|Alu	61574	NM_025140	80212	Hs.713131	NM_025140	HPRD:16919	CCDC92	-	coiled-coil domain containing 92	protein-coding
19-PTNLD28-TUMOR_peak_102970	chr9	37036927	37037111	+	5.39827	NA	Intergenic	CpG	-2543	NR_103999	5079	Hs.654464	NM_016734	HPRD:01334	PAX5	ALL3|BSAP	paired box 5	protein-coding
19-PTNLD28-TUMOR_peak_73779	chr4	829171	829493	+	5.39827	NA	Intergenic	Intergenic	-9387	NM_006651	10815	Hs.478930	NM_006651	HPRD:09233	CPLX1	CPX-I|CPX1	complexin 1	protein-coding
19-PTNLD28-TUMOR_peak_76121	chr4	86781668	86781907	+	5.39827	NA	intron (NM_001287805, intron 1 of 7)	intron (NM_001287805, intron 1 of 7)	32741	NM_001287805	83478	Hs.444229	NM_031305	HPRD:09804	ARHGAP24	FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP	Rho GTPase activating protein 24	protein-coding
19-PTNLD28-TUMOR_peak_40597	chr17	19913278	19913482	+	5.39827	NA	intron (NM_001243439, intron 1 of 14)	CpG	731	NM_001243439	92521	Hs.431045	NM_152904	HPRD:12301	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
19-PTNLD28-TUMOR_peak_73215	chr3	190683032	190683283	+	5.39827	NA	Intergenic	L1HS|LINE|L1	87438	NR_024343	100170222	Hs.717310	NR_024343		SNAR-I	snaR-3	small ILF3/NF90-associated RNA I	snRNA
19-PTNLD28-TUMOR_peak_35520	chr15	101547208	101547380	+	5.39827	NA	intron (NM_024652, intron 6 of 33)	intron (NM_024652, intron 6 of 33)	87834	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_97446	chr8	19962819	19963057	+	5.39827	NA	Intergenic	MIRc|SINE|MIR	77779	NM_001142325	6570	Hs.158322	NM_003053	HPRD:01897	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 (vesicular monoamine transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_63104	chr21	32087427	32087611	+	5.39501	NA	Intergenic	Intergenic	3576	NM_001164435	100288323	Hs.580877	NM_001164435	ENSG00000231068	KRTAP21-3	-	keratin associated protein 21-3	protein-coding
19-PTNLD28-TUMOR_peak_24707	chr12	56915178	56915336	+	5.39501	NA	promoter-TSS (NM_002898)	promoter-TSS (NM_002898)	-352	NM_002898	5939	Hs.505729	NM_002898		RBMS2	SCR3	RNA binding motif, single stranded interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_35988	chr16	4367589	4367685	+	5.39237	NA	Intergenic	Intergenic	10704	NR_110901	101926896	Hs.670300	NR_110901		LOC101926896	-	uncharacterized LOC101926896	ncRNA
19-PTNLD28-TUMOR_peak_101685	chr8	144978953	144979198	+	5.39113	NA	Intergenic	MER66B|LTR|ERV1	-26443	NM_031308	83481	Hs.200412	NM_031308		EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
19-PTNLD28-TUMOR_peak_61122	chr20	39946011	39946099	+	5.39113	NA	Intergenic	Intergenic	-17316	NM_015035	23051	Hs.380133	NM_015035	HPRD:10320	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
19-PTNLD28-TUMOR_peak_51925	chr2	30144040	30144163	+	5.39093	NA	5' UTR (NM_004304, exon 1 of 29)	5' UTR (NM_004304, exon 1 of 29)	376	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_67719	chr3	42306296	42306521	+	5.39093	NA	promoter-TSS (NM_001174138)	promoter-TSS (NM_001174138)	-969	NM_001174138	885	Hs.458426	NM_000729	HPRD:00321	CCK	-	cholecystokinin	protein-coding
19-PTNLD28-TUMOR_peak_38768	chr16	75511662	75511834	+	5.39093	NA	3' UTR (NM_021615, exon 3 of 3)	3' UTR (NM_021615, exon 3 of 3)	-13164	NM_145254	124491	Hs.487510	NM_145254	HPRD:14027	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
19-PTNLD28-TUMOR_peak_19077	chr11	63449370	63449553	+	5.39093	NA	intron (NM_001265591, intron 1 of 3)	intron (NM_001265591, intron 1 of 3)	539	NM_001265589	10313	Hs.743229	NM_006054	HPRD:18516	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
19-PTNLD28-TUMOR_peak_84353	chr5	177239196	177239460	+	5.39093	NA	Intergenic	Intergenic	-31823	NM_173663	285596	Hs.368516	NM_173663	HPRD:14870	FAM153A	NY-REN-7	family with sequence similarity 153, member A	protein-coding
19-PTNLD28-TUMOR_peak_22867	chr12	7342459	7342584	+	5.39093	NA	promoter-TSS (NM_000319)	promoter-TSS (NM_000319)	80	NM_001300789	5830	Hs.567327	NM_000319	HPRD:02684	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1	peroxisomal biogenesis factor 5	protein-coding
19-PTNLD28-TUMOR_peak_77204	chr4	140562539	140562627	+	5.39093	NA	Intergenic	ERVL-E-int|LTR|ERVL	-24339	NM_001204368	4258	Hs.81874	NM_002413	HPRD:03436	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_33909	chr15	63334922	63335018	+	5.39093	NA	5' UTR (NM_000366, exon 1 of 10)	5' UTR (NM_000366, exon 1 of 10)	132	NM_001018005	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_49359	chr19	45582479	45582567	+	5.39093	NA	promoter-TSS (NM_024707)	promoter-TSS (NM_024707)	5	NM_001007270	79760	Hs.466919	NM_024707	HPRD:07600	GEMIN7	SIP3	gem (nuclear organelle) associated protein 7	protein-coding
19-PTNLD28-TUMOR_peak_33964	chr15	64388085	64388210	+	5.38786	NA	promoter-TSS (NM_148955)	promoter-TSS (NM_148955)	64	NM_003099	6642	Hs.188634	NM_003099	HPRD:03171	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
19-PTNLD28-TUMOR_peak_32877	chr15	31631861	31632002	+	5.38740	NA	intron (NM_015995, intron 1 of 1)	intron (NM_015995, intron 1 of 1)	12848	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_54260	chr2	96658547	96658651	+	5.38716	NA	Intergenic	MIR3|SINE|MIR	-17700	NR_003698	729234	Hs.720108	NR_003698	ENSG00000231584	FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_61506	chr20	45988654	45988763	+	5.38568	NA	Intergenic	AluJb|SINE|Alu	-3075	NM_183048	23613	Hs.446240	NM_012408	HPRD:10166	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger, MYND-type containing 8	protein-coding
19-PTNLD28-TUMOR_peak_90853	chr7	1609945	1610036	+	5.38538	NA	promoter-TSS (NM_032302)	promoter-TSS (NM_032302)	281	NR_021487	114796	Hs.436146	NR_021487	ENSG00000230487	PSMG3-AS1	-	PSMG3 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_24289	chr12	52419302	52419402	+	5.38296	NA	intron (NM_001202233, intron 1 of 7)	L2a|LINE|L2	2736	NM_001202233	3164	Hs.524430	NM_002135	HPRD:00744	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4, group A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_24726	chr12	57082588	57082756	+	5.38296	NA	promoter-TSS (NM_001282602)	promoter-TSS (NM_001282602)	-480	NM_001282605	10728	Hs.50425	NM_006601	HPRD:06138	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3 (cytosolic)	protein-coding
19-PTNLD28-TUMOR_peak_68292	chr3	51987684	51987774	+	5.37831	NA	Intergenic	LTR33A|LTR|ERVL	-1601	NM_080865	118442	Hs.232213	NM_080865	HPRD:06078	GPR62	GPCR8|KPG_005	G protein-coupled receptor 62	protein-coding
19-PTNLD28-TUMOR_peak_11101	chr1	235805731	235805858	+	5.37831	NA	intron (NM_001098721, intron 1 of 3)	intron (NM_001098721, intron 1 of 3)	7499	NM_001098722	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_99634	chr8	98655822	98655910	+	5.37831	NA	promoter-TSS (NM_178812)	promoter-TSS (NM_178812)	-541	NM_178812	92140	Hs.377155	NM_178812	HPRD:17459	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
19-PTNLD28-TUMOR_peak_10498	chr1	226518312	226518455	+	5.37831	NA	Intergenic	AluSx3|SINE|Alu	-20934	NM_001270410	286826	Hs.120817	NM_173083	HPRD:13990	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
19-PTNLD28-TUMOR_peak_45117	chr18	29665627	29665734	+	5.37831	NA	Intergenic	AluSq2|SINE|Alu	-6138	NM_016271	51444	Hs.302408	NM_016271	HPRD:11508	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_19544	chr11	67659214	67659302	+	5.37831	NA	Intergenic	AluJr|SINE|Alu	-86451	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105256	chr9	111263816	111263928	+	5.37831	NA	Intergenic	L1PA2|LINE|L1	354403	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_59369	chr20	279315	279411	+	5.37831	NA	exon (NM_033089, exon 1 of 1)	exon (NM_033089, exon 1 of 1)	1159	NM_033089	85364	Hs.28608	NM_033089	HPRD:15701	ZCCHC3	C20orf99	zinc finger, CCHC domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_29279	chr14	20014584	20014676	+	5.37831	NA	exon (NM_001145442, exon 3 of 11)	exon (NM_001145442, exon 3 of 11)	5642	NM_001145442	641455	Hs.654289	NM_001145442	ENSG00000187537	POTEM	ACT|P704P|POTE14beta	POTE ankyrin domain family, member M	protein-coding
19-PTNLD28-TUMOR_peak_84014	chr5	172281609	172281758	+	5.37831	NA	intron (NM_001031711, intron 1 of 9)	MER6A|DNA|TcMar-Tigger	20460	NM_001031711	57222	Hs.509163	NM_020462	HPRD:13836	ERGIC1	ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding
19-PTNLD28-TUMOR_peak_101760	chr8	145638598	145638726	+	5.37691	NA	exon (NM_130849, exon 10 of 12)	exon (NM_130849, exon 10 of 12)	313	NM_001280557	55630	Hs.521934	NM_017767	HPRD:06137	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_58812	chr2	232328461	232328695	+	5.37452	NA	intron (NM_005381, intron 1 of 13)	CpG	627	NM_005381	4691	Hs.79110	NM_005381		NCL	C23	nucleolin	protein-coding
19-PTNLD28-TUMOR_peak_48671	chr19	35804592	35804811	+	5.37452	NA	TTS (NM_001199216)	TTS (NM_001199216)	-15368	NM_001278417	933	Hs.579691	NM_001771	HPRD:00114	CD22	SIGLEC-2|SIGLEC2	CD22 molecule	protein-coding
19-PTNLD28-TUMOR_peak_82222	chr5	133615447	133615562	+	5.37440	NA	Intergenic	Intergenic	-53554	NM_002715	5515	Hs.105818	NM_002715		PPP2CA	PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2, catalytic subunit, alpha isozyme	protein-coding
19-PTNLD28-TUMOR_peak_21465	chr11	117845543	117845631	+	5.37440	NA	Intergenic	Intergenic	-11519	NR_026691	3587	Hs.504035	NM_001558	HPRD:00911	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_38141	chr16	58672255	58672384	+	5.37440	NA	Intergenic	LTR8A|LTR|ERV1	-8529	NM_016284	23019	Hs.460923	NM_016284	HPRD:11999	CNOT1	CDC39|NOT1|NOT1H	CCR4-NOT transcription complex, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_98358	chr8	40502230	40502328	+	5.37440	NA	intron (NM_001135731, intron 4 of 5)	L1MC3|LINE|L1	253064	NM_024645	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_76788	chr4	119988626	119988737	+	5.37440	NA	Intergenic	L1PA3|LINE|L1	-68258	NM_016599	51778	Hs.732122	NM_016599	HPRD:05724	MYOZ2	C4orf5|CMH16|CS-1	myozenin 2	protein-coding
19-PTNLD28-TUMOR_peak_69305	chr3	90231568	90231913	+	5.37440	NA	Intergenic	AluSx1|SINE|Alu	1075066	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_25995	chr12	106142745	106142907	+	5.37440	NA	Intergenic	Intergenic	42274	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_98133	chr8	33436129	33436217	+	5.37440	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-11527	NM_024787	79845	Hs.151237	NM_024787	HPRD:11498	RNF122	-	ring finger protein 122	protein-coding
19-PTNLD28-TUMOR_peak_4863	chr1	92208703	92208881	+	5.37440	NA	intron (NM_001195684, intron 5 of 17)	intron (NM_001195684, intron 5 of 17)	143044	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_20031	chr11	74594042	74594150	+	5.37440	NA	intron (NM_182969, intron 10 of 18)	L1PA2|LINE|L1	66136	NM_001270380	143570	Hs.370145	NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
19-PTNLD28-TUMOR_peak_15405	chr10	105110579	105110837	+	5.37440	NA	exon (NM_032154, exon 1 of 7)	exon (NM_032154, exon 1 of 7)	183	NM_032154	84108	Hs.335808	NM_032154	HPRD:07427	PCGF6	MBLR|RNF134	polycomb group ring finger 6	protein-coding
19-PTNLD28-TUMOR_peak_50663	chr1_gl000192_random	200218	200403	+	5.37440	NA	intron (NR_103556, intron 30 of 45)	intron (NR_103556, intron 30 of 45)	207200	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_38713	chr16	74772219	74772307	+	5.37440	NA	intron (NM_024306, intron 2 of 6)	intron (NM_024306, intron 2 of 6)	36466	NM_024306	79152	Hs.461329	NM_024306	HPRD:16873	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
19-PTNLD28-TUMOR_peak_36883	chr16	24048166	24048254	+	5.37440	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	200910	NM_212535	5579	Hs.460355	NM_002738	HPRD:01499	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C, beta	protein-coding
19-PTNLD28-TUMOR_peak_86239	chr6	27577111	27577199	+	5.37440	NA	Intergenic	LTR41|LTR|ERVL	-84659	NR_038293	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_91252	chr7	7951113	7951316	+	5.37440	NA	Intergenic	Intergenic	-57160	NM_138426	113263	Hs.131673	NM_138426	HPRD:17043	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced transcript 1	protein-coding
19-PTNLD28-TUMOR_peak_13635	chr10	52923601	52923791	+	5.37440	NA	intron (NM_006258, intron 2 of 17)	L1P1|LINE|L1	89462	NM_006258	5592	Hs.407535	NM_006258	HPRD:08910	PRKG1	1|AAT8|PKG|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase, cGMP-dependent, type I	protein-coding
19-PTNLD28-TUMOR_peak_18693	chr11	57811019	57811150	+	5.37440	NA	intron (NM_001005212, intron 1 of 2)	intron (NM_001005212, intron 1 of 2)	12659	NM_001005186	219952	Hs.690432	NM_001005186	HPRD:15068	OR6Q1	OR11-226	olfactory receptor, family 6, subfamily Q, member 1	protein-coding
19-PTNLD28-TUMOR_peak_8947	chr1	188726789	188727059	+	5.37440	NA	Intergenic	L1PA2|LINE|L1	1719835	NM_199051	339479	Hs.65765	NM_199051	HPRD:16782	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	bone morphogenetic protein/retinoic acid inducible neural-specific 3	protein-coding
19-PTNLD28-TUMOR_peak_73590	chr3	196411876	196412122	+	5.37440	NA	Intergenic	Intergenic	27166	NM_032898	84984	Hs.282800	NM_032898	HPRD:17488	CEP19	C3orf34|MOSPGF	centrosomal protein 19kDa	protein-coding
19-PTNLD28-TUMOR_peak_87372	chr6	40820689	40820882	+	5.37440	NA	Intergenic	Intergenic	170234	NR_110873	101929555	Hs.552555	NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
19-PTNLD28-TUMOR_peak_60139	chr20	21588894	21589158	+	5.37440	NA	intron (NR_109880, intron 1 of 3)	intron (NR_109880, intron 1 of 3)	38364	NR_109880	101929625	Hs.542413	NR_109880		LOC101929625	-	uncharacterized LOC101929625	ncRNA
19-PTNLD28-TUMOR_peak_26826	chr12	122682820	122682933	+	5.37440	NA	intron (NM_001098519, intron 7 of 11)	L1MB7|LINE|L1	-5352	NM_030765	79369	Hs.363315	NM_030765	HPRD:12058	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_81931	chr5	126072003	126072107	+	5.37440	NA	Intergenic	Intergenic	-40260	NM_005573	4001	Hs.89497	NM_005573	HPRD:01036	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding
19-PTNLD28-TUMOR_peak_2760	chr1	41057972	41058060	+	5.37440	NA	Intergenic	MER66C|LTR|ERV1	60783	NM_152373	127396	Hs.524767	NM_152373	HPRD:11328	ZNF684	-	zinc finger protein 684	protein-coding
19-PTNLD28-TUMOR_peak_95787	chr7	139526992	139527083	+	5.37440	NA	intron (NM_001166254, intron 3 of 14)	intron (NM_001166254, intron 3 of 14)	-1915	NM_001166253	6916	Hs.520757	NM_001061	HPRD:02035	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1 (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_49074	chr19	40921007	40921095	+	5.37440	NA	Intergenic	Intergenic	-1780	NM_020956	57716	Hs.205457	NM_020956	HPRD:05758	PRX	CMT4F	periaxin	protein-coding
19-PTNLD28-TUMOR_peak_11802	chr10	5516770	5516858	+	5.37440	NA	Intergenic	HERVH-int|LTR|ERV1	24719	NM_017422	51806	Hs.180142	NM_017422	HPRD:05538	CALML5	CLSP	calmodulin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_71315	chr3	140775684	140775870	+	5.37440	NA	intron (NM_080862, intron 1 of 2)	intron (NM_080862, intron 1 of 2)	5034	NM_080862	92369	Hs.655112	NM_080862	HPRD:18108	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
19-PTNLD28-TUMOR_peak_105804	chr9	123257997	123258086	+	5.37440	NA	intron (NM_001011649, intron 12 of 36)	SVA_F|Other|Other	84407	NR_073556	55755	Hs.269560	NM_018249	HPRD:09740	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_37316	chr16	31085939	31086084	+	5.37250	NA	promoter-TSS (NM_024706)	promoter-TSS (NM_024706)	268	NM_014699	9726	Hs.119273	NM_014699	HPRD:15886	ZNF646	-	zinc finger protein 646	protein-coding
19-PTNLD28-TUMOR_peak_24512	chr12	54238897	54238985	+	5.37187	NA	Intergenic	Intergenic	-88123	NR_104332	102216268	Hs.742074	NR_104332		CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
19-PTNLD28-TUMOR_peak_13659	chr10	54074488	54074585	+	5.37187	NA	promoter-TSS (NR_038277)	promoter-TSS (NR_038277)	495	NM_012242	22943	Hs.40499	NM_012242	HPRD:05544	DKK1	DKK-1|SK	dickkopf WNT signaling pathway inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_98789	chr8	55014024	55014112	+	5.37187	NA	promoter-TSS (NM_001279360)	promoter-TSS (NM_001279360)	46	NM_001279360	10434	Hs.744046	NM_006330	HPRD:07063	LYPLA1	APT-1|APT1|LPL-I|LPL1|hAPT1	lysophospholipase I	protein-coding
19-PTNLD28-TUMOR_peak_2774	chr1	41249943	41250031	+	5.37010	NA	exon (NM_172163, exon 1 of 13)	exon (NM_172163, exon 1 of 13)	303	NM_004700	9132	Hs.473058	NM_004700	HPRD:04641	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel, KQT-like subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_45185	chr18	32556931	32557161	+	5.37010	NA	intron (NM_001143826, intron 1 of 7)	CpG	154	NM_001143826	10982	Hs.532824	NM_014268	HPRD:16157	MAPRE2	EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_12005	chr10	11727293	11727439	+	5.37010	NA	Intergenic	Intergenic	-56990	NM_024693	79746	Hs.22242	NM_024693	HPRD:10930	ECHDC3	-	enoyl CoA hydratase domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_106691	chr9	138388167	138388294	+	5.37010	NA	intron (NM_001048265, intron 2 of 2)	intron (NM_001048265, intron 2 of 2)	3531	NM_001048265	138162	Hs.414028	NM_144654	HPRD:12937	C9orf116	PIERCE1|RbEST47	chromosome 9 open reading frame 116	protein-coding
19-PTNLD28-TUMOR_peak_54601	chr2	102804074	102804309	+	5.37010	NA	intron (NM_003854, intron 1 of 11)	CpG	758	NM_003854	8808	Hs.659863	NM_003854	HPRD:05150	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor-like 2	protein-coding
19-PTNLD28-TUMOR_peak_21946	chr11	126217003	126217110	+	5.37010	NA	intron (NR_033839, intron 1 of 1)	intron (NR_033839, intron 1 of 1)	8426	NR_033839	399972	Hs.585206	NR_033839		ST3GAL4-AS1	DCPS-AS1	ST3GAL4 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_58492	chr2	220252864	220253059	+	5.36898	NA	promoter-TSS (NM_012100)	promoter-TSS (NM_012100)	-299	NM_012100	23549	Hs.258551	NM_012100	HPRD:09924	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_106687	chr9	138356191	138356414	+	5.36880	NA	non-coding (NR_038969, exon 3 of 3)	non-coding (NR_038969, exon 3 of 3)	7793	NR_038969	100506599	Hs.561897	NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24742	chr12	57400227	57400325	+	5.36880	NA	promoter-TSS (NM_014830)	promoter-TSS (NM_014830)	21	NM_014830	9880	Hs.591025	NM_014830	HPRD:13796	ZBTB39	ZNF922	zinc finger and BTB domain containing 39	protein-coding
19-PTNLD28-TUMOR_peak_109165	chrX	109646103	109646262	+	5.36880	NA	intron (NM_001171689, intron 2 of 7)	intron (NM_001171689, intron 2 of 7)	-16103	NM_020769	57529	Hs.201071	NM_020769	HPRD:06600	RGAG1	MAR9|MART9	retrotransposon gag domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_12728	chr10	30648952	30649103	+	5.36880	NA	Intergenic	Intergenic	8567	NR_106985	102466227		NR_106985		MIR7162	hsa-mir-7162	microRNA 7162	ncRNA
19-PTNLD28-TUMOR_peak_53054	chr2	64441581	64441869	+	5.36880	NA	Intergenic	Intergenic	-9106	NR_033837	150992	Hs.272318	NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
19-PTNLD28-TUMOR_peak_18726	chr11	58691119	58691238	+	5.36880	NA	Intergenic	Intergenic	-3924	NM_001220494	92292	Hs.38085	NM_080661	HPRD:14447	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_83347	chr5	153339342	153339464	+	5.36880	NA	Intergenic	L2b|LINE|L2	79094	NM_018691	10827	Hs.166551	NM_018691	HPRD:12831	FAM114A2	133K02|C5orf3	family with sequence similarity 114, member A2	protein-coding
19-PTNLD28-TUMOR_peak_15860	chr10	119198781	119199088	+	5.36880	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-63997	NM_173791	118987	Hs.501149	NM_173791		PDZD8	PDZK8|bA129M16.2	PDZ domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_96689	chr7	156743011	156743197	+	5.36217	NA	exon (NM_138400, exon 1 of 11)	exon (NM_138400, exon 1 of 11)	687	NM_138400	64434	Hs.15825	NM_138400	HPRD:18485	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
19-PTNLD28-TUMOR_peak_82547	chr5	139038184	139038306	+	5.36217	NA	intron (NM_016463, intron 1 of 2)	intron (NM_016463, intron 1 of 2)	9944	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_53551	chr2	74641619	74641810	+	5.35862	NA	exon (NM_001145054, exon 4 of 4)	exon (NM_001145054, exon 4 of 4)	3130	NM_001145054	388963	Hs.445377	NM_001145054	ENSG00000159239	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
19-PTNLD28-TUMOR_peak_76655	chr4	113436708	113436843	+	5.35245	NA	intron (NM_024019, intron 1 of 1)	CpG	553	NM_024019	63973	Hs.744415	NM_024019	HPRD:06976	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
19-PTNLD28-TUMOR_peak_32901	chr15	32322719	32322921	+	5.35245	NA	non-coding (NR_046324, exon 1 of 8)	non-coding (NR_046324, exon 1 of 8)	134	NR_046324	1139	Hs.511772	NM_000746		CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor, nicotinic, alpha 7 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_62838	chr21	17209497	17209656	+	5.35245	NA	intron (NM_001283041, intron 17 of 25)	intron (NM_001283041, intron 17 of 25)	107232	NM_001283041	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_6856	chr1	152114561	152114694	+	5.35245	NA	Intergenic	Intergenic	17077	NM_001122965	126638	Hs.376144	NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
19-PTNLD28-TUMOR_peak_32826	chr15	30842156	30842335	+	5.35245	NA	Intergenic	MER20|DNA|hAT-Charlie	-22513	NR_027470	100288380	Hs.642616	NR_027470	ENSG00000260128	ULK4P2	D-X|FAM7A2	ULK4 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_18987	chr11	62314556	62314711	+	5.35221	NA	promoter-TSS (NM_001620)	promoter-TSS (NM_001620)	-301	NM_001620	79026	Hs.502756	NM_001620	HPRD:14684	AHNAK	AHNAKRS	AHNAK nucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_84491	chr5	179229709	179229844	+	5.35126	NA	promoter-TSS (NM_054013)	promoter-TSS (NM_054013)	99	NM_054013	11282	Hs.567419	NM_014275	HPRD:05190	MGAT4B	GNT-IV|GNT-IVB	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B	protein-coding
19-PTNLD28-TUMOR_peak_2654	chr1	39863756	39863858	+	5.35103	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-11369	NM_015038	643314	Hs.658760	NM_015038	ENSG00000255103	KIAA0754	-	KIAA0754	protein-coding
19-PTNLD28-TUMOR_peak_24348	chr12	52704843	52704946	+	5.34956	NA	Intergenic	Intergenic	9245	NM_002284	3892	Hs.278658	NM_002284	HPRD:03567	KRT86	HB6|Hb1|KRTHB1|KRTHB6|MNX|hHb6	keratin 86	protein-coding
19-PTNLD28-TUMOR_peak_22072	chr11	128775711	128775899	+	5.34890	NA	promoter-TSS (NM_145013)	promoter-TSS (NM_145013)	159	NM_001256088	219833	Hs.689860	NM_145013	HPRD:11344	C11orf45	-	chromosome 11 open reading frame 45	protein-coding
19-PTNLD28-TUMOR_peak_61227	chr20	42846130	42846225	+	5.34890	NA	intron (NR_038337, intron 2 of 2)	intron (NR_038337, intron 2 of 2)	6451	NR_038337	100505783	Hs.159049	NR_038337	ENSG00000223891	OSER1-AS1	-	OSER1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_89532	chr6	134400821	134400972	+	5.34890	NA	Intergenic	LTR9|LTR|ERV1	-27107	NM_145176	154091	Hs.486508	NM_145176		SLC2A12	GLUT12|GLUT8	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding
19-PTNLD28-TUMOR_peak_63816	chr21	44494845	44494953	+	5.34890	NA	intron (NM_001178008, intron 1 of 16)	CpG	1141	NM_000071	875	Hs.533013	NM_000071	HPRD:01994	CBS	HIP4	cystathionine-beta-synthase	protein-coding
19-PTNLD28-TUMOR_peak_61479	chr20	45754869	45754979	+	5.34850	NA	intron (NM_005244, intron 9 of 15)	intron (NM_005244, intron 9 of 15)	-40685	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
19-PTNLD28-TUMOR_peak_105421	chr9	114360990	114361139	+	5.34850	NA	intron (NM_001146108, intron 1 of 9)	AluSx1|SINE|Alu	647	NM_012212	22949	Hs.584864	NM_012212	HPRD:03173	PTGR1	LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
19-PTNLD28-TUMOR_peak_41258	chr17	36887091	36887418	+	5.34850	NA	intron (NM_001136498, intron 2 of 3)	intron (NM_001136498, intron 2 of 3)	744	NM_001136498	284106	Hs.713595	NM_001136498		CISD3	Miner2	CDGSH iron sulfur domain 3	protein-coding
19-PTNLD28-TUMOR_peak_11738	chr10	3828693	3829048	+	5.34705	NA	Intergenic	Intergenic	-1397	NM_001160124	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_21385	chr11	116567921	116568023	+	5.34690	NA	Intergenic	MIRb|SINE|MIR	75742	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_46545	chr19	1081657	1081807	+	5.34223	NA	exon (NM_001282335, exon 17 of 22)	exon (NM_001282335, exon 17 of 22)	5099	NM_001282334	23526	Hs.465521	NM_012292	HPRD:03097	HMHA1	ARHGAP45|HA-1|HLA-HA1	histocompatibility (minor) HA-1	protein-coding
19-PTNLD28-TUMOR_peak_19657	chr11	69217389	69217523	+	5.34019	NA	Intergenic	L3|LINE|CR1	-82873	NR_120543	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_58362	chr2	218650332	218650431	+	5.34019	NA	Intergenic	Intergenic	-29065	NR_026597	729582	Hs.572788	NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
19-PTNLD28-TUMOR_peak_49939	chr19	50693968	50694074	+	5.34019	NA	Intergenic	Intergenic	-12864	NM_024729	79784	Hs.467142	NM_024729	HPRD:10543	MYH14	DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin, heavy chain 14, non-muscle	protein-coding
19-PTNLD28-TUMOR_peak_94638	chr7	104608090	104608236	+	5.34019	NA	Intergenic	Intergenic	23449	NR_039981	100216546	Hs.369356	NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
19-PTNLD28-TUMOR_peak_32395	chr14	106467229	106467317	+	5.34019	NA	Intergenic	Intergenic	-28915	NR_002224	8755	Hs.662288	NR_002224	ENSG00000233988	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_31018	chr14	69596141	69596281	+	5.34019	NA	intron (NM_001284206, intron 1 of 8)	intron (NM_001284206, intron 1 of 8)	23105	NM_001284207	8816	Hs.509780	NM_003861	HPRD:16032	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
19-PTNLD28-TUMOR_peak_58559	chr2	222288282	222288379	+	5.34019	NA	intron (NM_004438, intron 17 of 17)	intron (NM_004438, intron 17 of 17)	148680	NM_004438	2043	Hs.371218	NM_004438	HPRD:03719	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
19-PTNLD28-TUMOR_peak_71982	chr3	157614637	157614731	+	5.34019	NA	Intergenic	L1PA3|LINE|L1	209268	NM_003030	6474	Hs.55967	NM_003030		SHOX2	OG12|OG12X|SHOT	short stature homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_67414	chr3	32385661	32385763	+	5.34019	NA	intron (NM_178868, intron 1 of 3)	intron (NM_178868, intron 1 of 3)	-47451	NM_138410	112616	Hs.440494	NM_138410	HPRD:06988	CMTM7	CKLFSF7	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_46986	chr19	7701815	7701905	+	5.34019	NA	promoter-TSS (NM_001127396)	promoter-TSS (NM_001127396)	-127	NR_073560	6813	Hs.515104	NM_006949	HPRD:03423	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_52207	chr2	38481419	38481530	+	5.34019	NA	Intergenic	LTR27B|LTR|ERV1	122958	NM_022374	64225	Hs.727652	NM_022374	HPRD:10662	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_30441	chr14	55806620	55806755	+	5.34019	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	67815	NM_152231	55030	Hs.525348	NM_017943	HPRD:16442	FBXO34	Fbx34	F-box protein 34	protein-coding
19-PTNLD28-TUMOR_peak_103502	chr9	67790595	67790868	+	5.33977	NA	Intergenic	SST1|Satellite|centr	3458	NR_027422	100133121	Hs.744835	NR_027422	ENSG00000170215	FAM27B	FAM27A2	family with sequence similarity 27, member B	ncRNA
19-PTNLD28-TUMOR_peak_104738	chr9	97682753	97682901	+	5.33942	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	110583	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_49042	chr19	40502422	40502616	+	5.33900	NA	promoter-TSS (NM_001297763)	promoter-TSS (NM_001297763)	-424	NM_178544	339327	Hs.125008	NM_178544	HPRD:11726	ZNF546	ZNF49	zinc finger protein 546	protein-coding
19-PTNLD28-TUMOR_peak_11131	chr1	236183813	236183901	+	5.33900	NA	intron (NM_002508, intron 9 of 19)	intron (NM_002508, intron 9 of 19)	44624	NM_002508	4811	Hs.356624	NM_002508	HPRD:00574	NID1	NID	nidogen 1	protein-coding
19-PTNLD28-TUMOR_peak_81019	chr5	83014147	83014256	+	5.33900	NA	intron (NM_001884, intron 1 of 4)	intron (NM_001884, intron 1 of 4)	2695	NM_001884	1404	Hs.2799	NM_001884	HPRD:00275	HAPLN1	CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
19-PTNLD28-TUMOR_peak_72973	chr3	186667112	186667227	+	5.33900	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	18854	NM_173217	6480	Hs.207459	NM_003032	HPRD:00184	ST6GAL1	SIAT1|ST6GalI|ST6N	ST6 beta-galactosamide alpha-2,6-sialyltranferase 1	protein-coding
19-PTNLD28-TUMOR_peak_18841	chr11	61007359	61007456	+	5.33900	NA	Intergenic	AluSx1|SINE|Alu	-1222	NM_014224	5222	Hs.432854	NM_014224	HPRD:01356	PGA5	-	pepsinogen 5, group I (pepsinogen A)	protein-coding
19-PTNLD28-TUMOR_peak_2182	chr1	33342382	33342474	+	5.33900	NA	Intergenic	Intergenic	-4335	NM_001171941	252995	Hs.524234	NM_153756	HPRD:17009	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_60451	chr20	30449321	30449499	+	5.33900	NA	exon (NM_080611, exon 7 of 7)	exon (NM_080611, exon 7 of 7)	8391	NM_001012644	128853	Hs.585017	NM_080611	HPRD:13252	DUSP15	VHY	dual specificity phosphatase 15	protein-coding
19-PTNLD28-TUMOR_peak_105494	chr9	115827590	115827695	+	5.33767	NA	Intergenic	CpG	-8571	NM_001282515	7539	Hs.150406	NM_003408	HPRD:04258	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_93646	chr7	80272884	80273103	+	5.33379	NA	intron (NM_001001548, intron 1 of 14)	intron (NM_001001548, intron 1 of 14)	-2415	NR_110501	948	Hs.120949	NM_000072	HPRD:01430	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule (thrombospondin receptor)	protein-coding
19-PTNLD28-TUMOR_peak_67617	chr3	39296474	39296562	+	5.33379	NA	Intergenic	Intergenic	25009	NM_001337	1524	Hs.78913	NM_001337	HPRD:03277	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	chemokine (C-X3-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_97369	chr8	18144939	18145046	+	5.33379	NA	Intergenic	Intergenic	65815	NM_001160174	9	Hs.591847	NM_000662	HPRD:00149	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1 (arylamine N-acetyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_19850	chr11	71880252	71880340	+	5.33379	NA	Intergenic	AluSz|SINE|Alu	-20306	NM_016725	2348	Hs.73769	NM_000802	HPRD:00638	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
19-PTNLD28-TUMOR_peak_47738	chr19	15640966	15641054	+	5.33379	NA	intron (NM_173483, intron 4 of 13)	intron (NM_173483, intron 4 of 13)	21674	NM_173483	126410	Hs.156452	NM_173483	HPRD:08256	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450, family 4, subfamily F, polypeptide 22	protein-coding
19-PTNLD28-TUMOR_peak_68814	chr3	65535184	65535284	+	5.33379	NA	intron (NM_001033057, intron 2 of 22)	CpG	-344257	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98620	chr8	48274932	48275083	+	5.33379	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	101537	NM_001080394	23514	Hs.381058	NM_001080394	ENSG00000164808	SPIDR	KIAA0146	scaffolding protein involved in DNA repair	protein-coding
19-PTNLD28-TUMOR_peak_77147	chr4	139711089	139711235	+	5.33379	NA	Intergenic	Intergenic	-225751	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_59029	chr2	237086791	237086879	+	5.33379	NA	Intergenic	CpG	-10183	NM_001485	2637	Hs.184945	NM_001485	HPRD:03087	GBX2	-	gastrulation brain homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_27380	chr13	21347455	21347790	+	5.33379	NA	intron (NM_174928, intron 1 of 4)	CpG	435	NM_174928	221143	Hs.26674	NM_174928	HPRD:14135	N6AMT2	ESP13	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_38613	chr16	71547374	71547464	+	5.33379	NA	Intergenic	Intergenic	-12604	NM_005769	10164	Hs.251383	NM_005769	HPRD:07477	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_73114	chr3	189016409	189016509	+	5.33379	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-58076	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_372	chr1	6464855	6464943	+	5.33379	NA	Intergenic	Intergenic	-11073	NM_007274	11332	Hs.126137	NM_007274	HPRD:12517	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
19-PTNLD28-TUMOR_peak_84664	chr6	572097	572187	+	5.33379	NA	intron (NR_073064, intron 15 of 29)	intron (NR_073064, intron 15 of 29)	84822	NM_148959	135458	Hs.669039	NM_148959	HPRD:13722	HUS1B	-	HUS1 checkpoint homolog b (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_31368	chr14	76460006	76460094	+	5.33379	NA	intron (NM_001255995, intron 2 of 3)	MLT1J|LTR|ERVL-MaLR	7954	NM_001102564	112752	Hs.532626	NM_052873	HPRD:14449	IFT43	C14orf179|CED3	intraflagellar transport 43	protein-coding
19-PTNLD28-TUMOR_peak_31438	chr14	77670314	77670527	+	5.33379	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	22318	NM_020431	57156	Hs.22452	NM_020431	HPRD:16617	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
19-PTNLD28-TUMOR_peak_51725	chr2	27385137	27385287	+	5.33379	NA	Intergenic	Intergenic	13267	NM_175769	150921	Hs.591583	NM_175769		TCF23	OUT|TCF-23|bHLHa24	transcription factor 23	protein-coding
19-PTNLD28-TUMOR_peak_77666	chr4	153939308	153939412	+	5.33379	NA	Intergenic	THE1D|LTR|ERVL-MaLR	75225	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_89304	chr6	121905913	121906069	+	5.33379	NA	Intergenic	Intergenic	149268	NM_000165	2697	Hs.74471	NM_000165	HPRD:00414	GJA1	AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD	gap junction protein, alpha 1, 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_8430	chr1	178016102	178016212	+	5.33379	NA	Intergenic	Intergenic	-9015	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_36083	chr16	5343438	5343528	+	5.33379	NA	Intergenic	MER5B|DNA|hAT-Charlie	-195662	NM_001289029	196483	Hs.406461	NM_201400	HPRD:18018	FAM86A	-	family with sequence similarity 86, member A	protein-coding
19-PTNLD28-TUMOR_peak_88101	chr6	56112189	56112410	+	5.33379	NA	promoter-TSS (NM_030820)	promoter-TSS (NM_030820)	79	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_99911	chr8	104123785	104123935	+	5.33379	NA	Intergenic	Intergenic	-29061	NM_024812	79870	Hs.533446	NM_024812	HPRD:09422	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_14730	chr10	88345331	88345425	+	5.33379	NA	Intergenic	Intergenic	-63837	NM_015045	23063	Hs.203099	NM_015045	HPRD:11072	WAPAL	FOE|KIAA0261|WAPL	wings apart-like homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_107534	chrX	10723663	10723788	+	5.33379	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	-77946	NM_001098624	4281	Hs.27695	NM_000381	HPRD:02047	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
19-PTNLD28-TUMOR_peak_55304	chr2	120281693	120281795	+	5.33379	NA	exon (NM_002980, exon 1 of 13)	exon (NM_002980, exon 1 of 13)	284	NM_002980	6344	Hs.42091	NM_002980	HPRD:01628	SCTR	SR	secretin receptor	protein-coding
19-PTNLD28-TUMOR_peak_75711	chr4	76326778	76326935	+	5.33379	NA	Intergenic	L1PA2|LINE|L1	47570	NR_033964	441025	Hs.407667	NR_033964	ENSG00000251383	LOC441025	-	uncharacterized LOC441025	ncRNA
19-PTNLD28-TUMOR_peak_27244	chr12	132288543	132288743	+	5.33379	NA	Intergenic	Intergenic	-24298	NM_016155	4326	Hs.709245	NM_016155	HPRD:03793	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_70191	chr3	122803333	122803543	+	5.33193	NA	intron (NR_028444, intron 1 of 15)	intron (NR_028444, intron 1 of 15)	17582	NR_028444	10954	Hs.477352	NM_006810	HPRD:08334	PDIA5	PDIR	protein disulfide isomerase family A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_11805	chr10	5544271	5544408	+	5.33087	NA	Intergenic	Intergenic	-2806	NM_017422	51806	Hs.180142	NM_017422	HPRD:05538	CALML5	CLSP	calmodulin-like 5	protein-coding
19-PTNLD28-TUMOR_peak_6996	chr1	153643987	153644200	+	5.33087	NA	promoter-TSS (NM_004515)	promoter-TSS (NM_004515)	-589	NM_004515	3608	Hs.75117	NM_004515	HPRD:04419	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
19-PTNLD28-TUMOR_peak_53466	chr2	73123202	73123306	+	5.33087	NA	Intergenic	Intergenic	8742	NM_003124	6697	Hs.301540	NM_003124	HPRD:01632	SPR	SDR38C1	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)	protein-coding
19-PTNLD28-TUMOR_peak_63397	chr21	37507271	37507368	+	5.33076	NA	promoter-TSS (NM_001236)	promoter-TSS (NM_001236)	56	NM_001236	874	Hs.154510	NM_001236	HPRD:07222	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
19-PTNLD28-TUMOR_peak_62112	chr20	52825175	52825263	+	5.32841	NA	intron (NM_002623, intron 1 of 3)	intron (NM_002623, intron 1 of 3)	717	NM_002623	5203	Hs.91161	NM_002623	HPRD:05358	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_106247	chr9	130921840	130921930	+	5.32841	NA	promoter-TSS (NM_024112)	promoter-TSS (NM_024112)	-654	NM_024112	79095	Hs.522412	NM_024112	HPRD:12946	C9orf16	EST00098	chromosome 9 open reading frame 16	protein-coding
19-PTNLD28-TUMOR_peak_6857	chr1	152117786	152118046	+	5.32698	NA	Intergenic	SVA_C|Other|Other	13788	NM_001122965	126638	Hs.376144	NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
19-PTNLD28-TUMOR_peak_68018	chr3	48157903	48158053	+	5.32698	NA	Intergenic	AluSx|SINE|Alu	-27209	NM_001134364	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_42799	chr17	61043270	61043363	+	5.32698	NA	intron (NR_036146, intron 3 of 3)	intron (NR_036146, intron 3 of 3)	-43582	NM_025185	26115	Hs.410889	NM_015623	ENSG00000170921	TANC2	ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
19-PTNLD28-TUMOR_peak_24127	chr12	49691255	49691471	+	5.32698	NA	non-coding (NR_120449, exon 5 of 8)	non-coding (NR_120449, exon 5 of 8)	2454	NM_006262	5630	Hs.37044	NM_006262		PRPH	NEF4|PRPH1	peripherin	protein-coding
19-PTNLD28-TUMOR_peak_54620	chr2	103236992	103237167	+	5.32698	NA	intron (NM_003048, intron 1 of 11)	intron (NM_003048, intron 1 of 11)	913	NM_003048	6549	Hs.250083	NM_003048	HPRD:02756	SLC9A2	NHE2	solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2	protein-coding
19-PTNLD28-TUMOR_peak_33212	chr15	41136137	41136236	+	5.32652	NA	promoter-TSS (NM_181642)	promoter-TSS (NM_181642)	-60	NM_003710	6692	Hs.233950	NM_003710	HPRD:05494	SPINT1	HAI|HAI1|MANSC2	serine peptidase inhibitor, Kunitz type 1	protein-coding
19-PTNLD28-TUMOR_peak_54320	chr2	97428333	97428421	+	5.32652	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	1738	NM_020184	26504	Hs.175043	NM_020184	HPRD:07420	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
19-PTNLD28-TUMOR_peak_41693	chr17	42275876	42275964	+	5.32652	NA	promoter-TSS (NM_020218)	promoter-TSS (NM_020218)	-391	NM_001098833	56970	Hs.512651	NM_020218	ENSG00000087152	ATXN7L3	-	ataxin 7-like 3	protein-coding
19-PTNLD28-TUMOR_peak_1883	chr1	28996056	28996174	+	5.32586	NA	intron (NM_024482, intron 1 of 9)	intron (NM_024482, intron 1 of 9)	875	NM_006582	10691	Hs.632373	NM_006582	HPRD:16059	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_82734	chr5	140940401	140940585	+	5.32586	NA	intron (NR_038333, intron 1 of 2)	intron (NR_038333, intron 1 of 2)	2615	NR_038333	100505658	Hs.655458	NR_038333	ENSG00000246422	LOC100505658	-	uncharacterized LOC100505658	ncRNA
19-PTNLD28-TUMOR_peak_16519	chr11	819237	819570	+	5.32059	NA	intron (NM_020376, intron 1 of 9)	CpG	502	NM_020376	57104	Hs.654697	NM_020376	HPRD:11443	PNPLA2	1110001C14Rik|ATGL|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin-like phospholipase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_104866	chr9	100290483	100290710	+	5.31676	NA	intron (NM_001166116, intron 2 of 9)	intron (NM_001166116, intron 2 of 9)	26675	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_14069	chr10	71562501	71562616	+	5.31175	NA	intron (NM_080800, intron 1 of 37)	CpG	914	NM_080805	1305	Hs.695934	NM_005203	HPRD:00383	COL13A1	COLXIIIA1	collagen, type XIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_9309	chr1	202112632	202112790	+	5.31175	NA	intron (NM_001256129, intron 1 of 5)	intron (NM_001256129, intron 1 of 5)	1160	NM_138795	127829	Hs.497399	NM_138795	HPRD:09807	ARL8A	ARL10B|GIE2	ADP-ribosylation factor-like 8A	protein-coding
19-PTNLD28-TUMOR_peak_53778	chr2	85553682	85553841	+	5.31000	NA	exon (NM_001206841, exon 2 of 4)	exon (NM_001206841, exon 2 of 4)	1658	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_79367	chr5	32810966	32811113	+	5.30962	NA	Intergenic	Intergenic	99601	NM_001204375	4883	Hs.13528	NM_000908	HPRD:00167	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_58647	chr2	225682662	225682823	+	5.30962	NA	intron (NM_001290263, intron 29 of 55)	intron (NM_001290263, intron 29 of 55)	129040	NM_001290263	55619	Hs.46578	NM_014689	HPRD:10919	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
19-PTNLD28-TUMOR_peak_41062	chr17	33415818	33416210	+	5.30962	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	334	NR_037713	117584	Hs.13680	NM_057178	HPRD:11489	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_34389	chr15	72650992	72651080	+	5.30962	NA	intron (NM_000520, intron 1 of 13)	intron (NM_000520, intron 1 of 13)	-17418	NR_027262	80072	Hs.591113	NM_025005	ENSG00000260339	HEXA-AS1	C15orf34	HEXA antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97878	chr8	27950217	27950318	+	5.30962	NA	promoter-TSS (NM_018091)	promoter-TSS (NM_018091)	-317	NM_001284226	55140	Hs.491336	NM_018091	HPRD:10936	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_20198	chr11	77184279	77184409	+	5.30962	NA	intron (NM_002576, intron 1 of 14)	CpG	764	NM_002576	5058	Hs.435714	NM_002576	HPRD:03995	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_55564	chr2	128293194	128293299	+	5.30640	NA	promoter-TSS (NM_001080527)	promoter-TSS (NM_001080527)	-132	NM_001080527	4648	Hs.154578	NM_001080527	ENSG00000169994	MYO7B	-	myosin VIIB	protein-coding
19-PTNLD28-TUMOR_peak_102018	chr9	4258362	4258484	+	5.30640	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	41612	NM_001042413	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_30505	chr14	57810553	57810804	+	5.30640	NA	Intergenic	L1PA3|LINE|L1	-46593	NM_001011713	122830	Hs.165465	NM_001011713		NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding
19-PTNLD28-TUMOR_peak_107479	chrX	8434044	8434245	+	5.30640	NA	exon (NM_001001888, exon 3 of 3)	exon (NM_001001888, exon 3 of 3)	1273	NM_001001888	425054	Hs.279737	NM_001001888	HPRD:15646	VCX3B	VCX-C|VCXC	variable charge, X-linked 3B	protein-coding
19-PTNLD28-TUMOR_peak_96210	chr7	149095468	149095745	+	5.30640	NA	Intergenic	Intergenic	62447	NM_015694	27153	Hs.38512	NM_015694	HPRD:13849	ZNF777	-	zinc finger protein 777	protein-coding
19-PTNLD28-TUMOR_peak_100084	chr8	110241386	110241528	+	5.30640	NA	Intergenic	Intergenic	100705	NM_001128211	84955	Hs.380291	NM_032869	HPRD:16200	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_13984	chr10	70231716	70231892	+	5.30640	NA	promoter-TSS (NM_001080449)	promoter-TSS (NM_001080449)	-74	NM_001080449	1763	Hs.532446	NM_001080449	ENSG00000138346	DNA2	DNA2L|PEOA6|SCKL8|hDNA2	DNA replication helicase/nuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_34333	chr15	71439009	71439240	+	5.30640	NA	intron (NM_024817, intron 1 of 16)	intron (NM_024817, intron 1 of 16)	5336	NM_024817	79875	Hs.387057	NM_024817	HPRD:07835	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin, type I, domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_106154	chr9	129957755	129957845	+	5.30640	NA	intron (NM_001190728, intron 11 of 16)	intron (NM_001190728, intron 11 of 16)	-68141	NM_001286779	84253	Hs.29304	NM_032293	HPRD:13567	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain-like 3	protein-coding
19-PTNLD28-TUMOR_peak_104637	chr9	95882265	95882353	+	5.30640	NA	Intergenic	Intergenic	14261	NM_004148	4814	Hs.494457	NM_004148	HPRD:03639	NINJ1	NIN1|NINJURIN	ninjurin 1	protein-coding
19-PTNLD28-TUMOR_peak_101040	chr8	132817005	132817093	+	5.30640	NA	Intergenic	Intergenic	-99307	NM_015137	23167	Hs.204564	NM_015137	HPRD:17179	EFR3A	-	EFR3 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_27758	chr13	33000368	33000529	+	5.30278	NA	intron (NM_001286459, intron 1 of 5)	intron (NM_001286459, intron 1 of 5)	1867	NM_001286460	90634	Hs.732118	NM_052818	HPRD:12384	N4BP2L1	CG018	NEDD4 binding protein 2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_218	chr1	2245889	2246118	+	5.30278	NA	Intergenic	CpG	38097	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
19-PTNLD28-TUMOR_peak_87928	chr6	52170319	52170480	+	5.30278	NA	Intergenic	L2a|LINE|L2	-20720	NM_001270472	4172	Hs.179565	NM_002388	HPRD:04072	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
19-PTNLD28-TUMOR_peak_1881	chr1	28995492	28995703	+	5.30278	NA	intron (NM_024482, intron 1 of 9)	GC_rich|Low_complexity|Low_complexity	357	NM_006582	10691	Hs.632373	NM_006582	HPRD:16059	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_53341	chr2	70351301	70351668	+	5.30278	NA	non-coding (NR_024444, exon 2 of 2)	non-coding (NR_024444, exon 2 of 2)	964	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LOC100133985	-	uncharacterized LOC100133985	ncRNA
19-PTNLD28-TUMOR_peak_78532	chr4	191013830	191013982	+	5.30278	NA	Intergenic	LSAU|Satellite|Satellite	28249	NR_121644	100419743		NR_121644		DBET	DBE-T	D4Z4 binding element transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42695	chr17	58156861	58156990	+	5.30278	NA	promoter-TSS (NM_022070)	promoter-TSS (NM_022070)	-633	NM_022070	63897	Hs.221899	NM_022070	HPRD:12399	HEATR6	ABC1	HEAT repeat containing 6	protein-coding
19-PTNLD28-TUMOR_peak_45651	chr18	46476272	46476474	+	5.30196	NA	promoter-TSS (NM_001190822)	promoter-TSS (NM_001190822)	-670	NM_001190822	4092	Hs.465087	NM_005904	HPRD:04241	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19-PTNLD28-TUMOR_peak_59156	chr2	239510316	239510599	+	5.30132	NA	Intergenic	Intergenic	-46317	NR_037809	151171	Hs.652076	NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
19-PTNLD28-TUMOR_peak_16539	chr11	1017361	1017530	+	5.30132	NA	exon (NM_005961, exon 31 of 33)	exon (NM_005961, exon 31 of 33)	19261	NM_005961	4588	Hs.528432	NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
19-PTNLD28-TUMOR_peak_24054	chr12	48499442	48499595	+	5.30132	NA	promoter-TSS (NM_001166686)	promoter-TSS (NM_001166686)	-138	NM_001166686	5213	Hs.75160	NM_000289	HPRD:01988	PFKM	ATP-PFK|GSD7|PFK-1|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
19-PTNLD28-TUMOR_peak_67725	chr3	42543370	42543458	+	5.30132	NA	promoter-TSS (NM_001251885)	promoter-TSS (NM_001251885)	-690	NM_004624	7433	Hs.348500	NM_004624	HPRD:01890	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_17056	chr11	9779674	9779866	+	5.30132	NA	promoter-TSS (NR_036485)	promoter-TSS (NR_036485)	-70	NR_036485	283104	Hs.632156	NR_036485	ENSG00000246273	SBF2-AS1	-	SBF2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_86249	chr6	27661625	27661807	+	5.30132	NA	promoter-TSS (NR_038293)	promoter-TSS (NR_038293)	-98	NR_038293	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_42572	chr17	56323310	56323398	+	5.30132	NA	intron (NM_006151, intron 3 of 12)	intron (NM_006151, intron 3 of 12)	7567	NM_001160102	4025	Hs.234742	NM_006151	HPRD:11825	LPO	SPO	lactoperoxidase	protein-coding
19-PTNLD28-TUMOR_peak_71581	chr3	148933436	148933545	+	5.30132	NA	intron (NR_046371, intron 1 of 17)	intron (NR_046371, intron 1 of 17)	6342	NM_000096	1356	Hs.558314	NM_000096	HPRD:00317	CP	CP-2	ceruloplasmin (ferroxidase)	protein-coding
19-PTNLD28-TUMOR_peak_27254	chr12	132413353	132413468	+	5.30132	NA	promoter-TSS (NM_025215)	promoter-TSS (NM_025215)	-335	NM_001002020	80324	Hs.592004	NM_025215	HPRD:10481	PUS1	MLASA1	pseudouridylate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_15360	chr10	104387653	104387760	+	5.30132	NA	intron (NM_016169, intron 11 of 11)	intron (NM_016169, intron 11 of 11)	-16546	NM_030912	81603	Hs.336810	NM_030912	HPRD:06934	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
19-PTNLD28-TUMOR_peak_12330	chr10	21806262	21806599	+	5.30132	NA	exon (NM_207371, exon 4 of 4)	exon (NM_207371, exon 4 of 4)	8181	NM_207371	387640	Hs.350848	NM_207371	HPRD:16981	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_103424	chr9	66457908	66458027	+	5.29829	NA	intron (NR_121647, intron 1 of 4)	CpG	678	NR_121647	103352539	Hs.351215	NR_121647		LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
19-PTNLD28-TUMOR_peak_49006	chr19	39900701	39900806	+	5.29811	NA	promoter-TSS (NR_039755)	promoter-TSS (NR_039755)	-435	NR_039755	100616163		NR_039755	miRBase:MI0016897	MIR4530	-	microRNA 4530	ncRNA
19-PTNLD28-TUMOR_peak_107092	chrUn_gl000219	42089	42226	+	5.29596	NA	Intergenic	Intergenic	57485	NR_027436	283788	Hs.657131	NR_027436		LOC283788	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_94221	chr7	99156708	99156835	+	5.29404	NA	intron (NM_001009958, intron 1 of 2)	CpG	323	NM_001009958	79027	Hs.599798	NM_024061	HPRD:11673	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
19-PTNLD28-TUMOR_peak_84777	chr6	2222375	2222547	+	5.29360	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	23407	NM_001500	2762	Hs.144496	NM_001500	HPRD:11925	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_27304	chr12	133393754	133393867	+	5.29360	NA	intron (NM_005895, intron 2 of 23)	intron (NM_005895, intron 2 of 23)	11478	NM_005895	2802	Hs.507333	NM_005895	HPRD:03990	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
19-PTNLD28-TUMOR_peak_34035	chr15	65931072	65931160	+	5.29360	NA	intron (NM_001301031, intron 2 of 7)	intron (NM_001301031, intron 2 of 7)	-4127	NM_001254740	9187	Hs.173092	NM_004727	HPRD:04685	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding
19-PTNLD28-TUMOR_peak_4808	chr1	90528332	90528496	+	5.29360	NA	Intergenic	L1PA3|LINE|L1	67736	NM_182976	284695	Hs.306221	NM_181781	HPRD:15774	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
19-PTNLD28-TUMOR_peak_32953	chr15	33171689	33171779	+	5.29360	NA	intron (NM_001277313, intron 16 of 20)	intron (NM_001277313, intron 16 of 20)	-160668	NR_109767	100131315	Hs.610545	NR_109767		LOC100131315	-	uncharacterized LOC100131315	ncRNA
19-PTNLD28-TUMOR_peak_107594	chrX	13703351	13703442	+	5.29360	NA	Intergenic	Intergenic	-3844	NM_001195328	9367	Hs.495704	NM_004251		RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_75421	chr4	57242170	57242258	+	5.29360	NA	intron (NM_001286670, intron 3 of 11)	AluJb|SINE|Alu	11460	NM_001286669	132949	Hs.104347	NM_181806	HPRD:12398	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_19725	chr11	70058604	70058692	+	5.29360	NA	Intergenic	Intergenic	9379	NM_003824	8772	Hs.86131	NM_003824	HPRD:03909	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_65742	chr22	42840177	42840303	+	5.29360	NA	Intergenic	Intergenic	-11839	NM_145912	150372	Hs.436677	NM_145912	HPRD:16380	NFAM1	CNAIP|bK126B4.4	NFAT activating protein with ITAM motif 1	protein-coding
19-PTNLD28-TUMOR_peak_107413	chrX	3467559	3467735	+	5.29360	NA	Intergenic	Intergenic	-109881	NR_046643	100873944		NR_046643		PRKX-AS1	-	PRKX antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_37824	chr16	52667960	52668205	+	5.29360	NA	Intergenic	Intergenic	-27195	NR_033920	643714	Hs.662199	NR_033920	ENSG00000249231	CASC16	LINC00918	cancer susceptibility candidate 16 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_55510	chr2	125356104	125356274	+	5.29360	NA	intron (NM_130773, intron 11 of 23)	L1PA2|LINE|L1	573325	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_85572	chr6	15063005	15063093	+	5.29360	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-183157	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_88100	chr6	56111969	56112066	+	5.29360	NA	intron (NM_030820, intron 1 of 29)	intron (NM_030820, intron 1 of 29)	361	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_99866	chr8	103697959	103698450	+	5.29360	NA	Intergenic	Intergenic	-30074	NM_005655	7071	Hs.435001	NM_005655	HPRD:03527	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel-like factor 10	protein-coding
19-PTNLD28-TUMOR_peak_15200	chr10	101442691	101442802	+	5.29360	NA	intron (NM_020354, intron 5 of 12)	intron (NM_020354, intron 5 of 12)	23483	NM_020354	57089	Hs.28326	NM_020354		ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
19-PTNLD28-TUMOR_peak_14805	chr10	90259698	90259832	+	5.29360	NA	intron (NM_001031709, intron 4 of 6)	intron (NM_001031709, intron 4 of 6)	83317	NM_018363	55328	Hs.149849	NM_018363	HPRD:07742	RNLS	C10orf59|RENALASE	renalase, FAD-dependent amine oxidase	protein-coding
19-PTNLD28-TUMOR_peak_100470	chr8	123691159	123691300	+	5.29360	NA	Intergenic	Intergenic	-102672	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_15219	chr10	101853405	101853500	+	5.29360	NA	Intergenic	SVA_F|Other|Other	-11810	NM_001308	1369	Hs.2246	NM_001308	HPRD:09120	CPN1	CPN|SCPN	carboxypeptidase N, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_40857	chr17	27893955	27894071	+	5.29341	NA	promoter-TSS (NM_198147)	promoter-TSS (NM_198147)	29	NM_198147	116236	Hs.106510	NM_198147	HPRD:14014	ABHD15	-	abhydrolase domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_51924	chr2	30143369	30143658	+	5.28714	NA	exon (NM_004304, exon 1 of 29)	exon (NM_004304, exon 1 of 29)	964	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_105400	chr9	113508132	113508220	+	5.28714	NA	intron (NM_001166281, intron 6 of 11)	intron (NM_001166281, intron 6 of 11)	77125	NM_001166280	4593	Hs.521653	NM_005592	HPRD:03190	MUSK	-	muscle, skeletal, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_86670	chr6	31822897	31823024	+	5.28714	NA	Intergenic	SVA_F|Other|Other	7749	NM_000434	4758	Hs.520037	NM_000434	HPRD:09751	NEU1	NANH|NEU|SIAL1	sialidase 1 (lysosomal sialidase)	protein-coding
19-PTNLD28-TUMOR_peak_48579	chr19	34397641	34397735	+	5.28714	NA	Intergenic	CpG	109937	NM_024076	79047	Hs.221873	NM_024076	HPRD:13765	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
19-PTNLD28-TUMOR_peak_36420	chr16	14457716	14457811	+	5.28710	NA	Intergenic	AluY|SINE|Alu	54621	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_105287	chr9	111774920	111775011	+	5.28710	NA	intron (NM_003798, intron 1 of 18)	intron (NM_003798, intron 1 of 18)	909	NM_003798	8727	Hs.58488	NM_003798	HPRD:09210	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin (cadherin-associated protein), alpha-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21988	chr11	126849410	126849517	+	5.28064	NA	intron (NM_001301097, intron 1 of 15)	MIRb|SINE|MIR	8975	NR_036126	100422918		NR_036126		MIR3167	-	microRNA 3167	ncRNA
19-PTNLD28-TUMOR_peak_65371	chr22	37269829	37269980	+	5.28064	NA	intron (NM_013416, intron 7 of 8)	intron (NM_013416, intron 7 of 8)	12874	NM_000631	4689	Hs.474781	NM_000631	HPRD:03289	NCF4	NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_21631	chr11	120107389	120107613	+	5.28064	NA	intron (NM_001244682, intron 1 of 12)	intron (NM_001244682, intron 1 of 12)	152	NM_001244682	25833	Hs.227115	NM_014352	HPRD:09582	POU2F3	Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a	POU class 2 homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_37031	chr16	28425035	28425306	+	5.28064	NA	intron (NM_001199142, intron 1 of 20).2	intron (NM_001199142, intron 1 of 20).2	-9961	NM_003752	8663	Hs.567374	NM_003752	HPRD:04889	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3, subunit C	protein-coding
19-PTNLD28-TUMOR_peak_7849	chr1	164629735	164629892	+	5.28064	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	101216	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_92728	chr7	57471886	57472008	+	5.28064	NA	promoter-TSS (NR_036102)	promoter-TSS (NR_036102)	-784	NR_036102	100422939		NR_036102	miRBase:MI0014173	MIR3147	-	microRNA 3147	ncRNA
19-PTNLD28-TUMOR_peak_57148	chr2	177574432	177574658	+	5.28064	NA	Intergenic	Intergenic	72063	NR_110599	102724224	Hs.663125	NR_110599		LOC102724224	-	uncharacterized LOC102724224	ncRNA
19-PTNLD28-TUMOR_peak_98724	chr8	52626006	52626111	+	5.28064	NA	intron (NM_144651, intron 1 of 22)	intron (NM_144651, intron 1 of 22)	95947	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_48548	chr19	33675166	33675366	+	5.28064	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-10333	NM_002333	4037	Hs.515340	NM_002333		LRP3	-	low density lipoprotein receptor-related protein 3	protein-coding
19-PTNLD28-TUMOR_peak_1851	chr1	28674909	28675021	+	5.28064	NA	Intergenic	LTR38|LTR|ERV1	19452	NM_017638	54797	Hs.479911	NM_017638	HPRD:17476	MED18	p28b	mediator complex subunit 18	protein-coding
19-PTNLD28-TUMOR_peak_93357	chr7	74470721	74470845	+	5.28064	NA	3' UTR (NM_001281441, exon 9 of 9)	3' UTR (NM_001281441, exon 9 of 9)	18934	NM_001281441	81554	Hs.529623	NM_030798	HPRD:15654	WBSCR16	-	Williams-Beuren syndrome chromosome region 16	protein-coding
19-PTNLD28-TUMOR_peak_77173	chr4	140098011	140098146	+	5.28015	NA	Intergenic	CpG	-37448	NM_201999	1998	Hs.634040	NM_006874	HPRD:16856	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74-like factor 2 (ets domain transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_108669	chrX	70397306	70397416	+	5.28004	NA	Intergenic	L3b|LINE|CR1	32680	NM_001166660	54413	Hs.438877	NM_018977	HPRD:02275	NLGN3	HNL3	neuroligin 3	protein-coding
19-PTNLD28-TUMOR_peak_91746	chr7	27779358	27779482	+	5.28004	NA	promoter-TSS (NM_001079864)	promoter-TSS (NM_001079864)	-294	NM_001079864	8887	Hs.34576	NM_006024	HPRD:05618	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 (human T-cell leukemia virus type I) binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2725	chr1	40627565	40627654	+	5.27883	NA	intron (NM_012421, intron 1 of 7)	CpG	568	NM_012421	6018	Hs.205627	NM_012421	HPRD:01614	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding
19-PTNLD28-TUMOR_peak_48592	chr19	34745036	34745311	+	5.27577	NA	promoter-TSS (NM_014686)	promoter-TSS (NM_014686)	-283	NM_014686	9710	Hs.330073	NM_014686	HPRD:11077	KIAA0355	-	KIAA0355	protein-coding
19-PTNLD28-TUMOR_peak_107309	chrUn_gl000240	955	1054	+	5.27577	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_39341	chr16	88328716	88328885	+	5.27577	NA	Intergenic	Intergenic	100913	NR_110944	101928880	Hs.634835	NR_110944	ENSG00000260420	LOC101928880	LA16c-444G7.2	uncharacterized LOC101928880	ncRNA
19-PTNLD28-TUMOR_peak_3134	chr1	45315316	45315435	+	5.27577	NA	TTS (NM_001261418)	TTS (NM_001261418)	-6759	NM_003738	8643	Hs.591497	NM_003738	HPRD:04722	PTCH2	PTC2	patched 2	protein-coding
19-PTNLD28-TUMOR_peak_100796	chr8	128354530	128354643	+	5.27577	NA	intron (NR_117099, intron 3 of 3)	intron (NR_117099, intron 3 of 3)	-58058	NR_109834	101805488	Hs.745578	NR_109834		CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_32230	chr14	104024654	104024763	+	5.27454	NA	3' UTR (NM_004873, exon 2 of 2)	3' UTR (NM_004873, exon 2 of 2)	3947	NM_001015049	9529	Hs.5443	NM_004873	HPRD:04862	BAG5	BAG-5	BCL2-associated athanogene 5	protein-coding
19-PTNLD28-TUMOR_peak_51384	chr2	19011409	19011561	+	5.27454	NA	Intergenic	Intergenic	-240639	NM_001199088	93034	Hs.744358	NM_033253	HPRD:11405	NT5C1B	AIRP|CN-IB|CN1B	5'-nucleotidase, cytosolic IB	protein-coding
19-PTNLD28-TUMOR_peak_79871	chr5	53813778	53813930	+	5.27454	NA	exon (NM_001145427, exon 1 of 2)	exon (NM_001145427, exon 1 of 2)	261	NM_001102575	112574	Hs.432755	NM_052870	HPRD:15407	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
19-PTNLD28-TUMOR_peak_67573	chr3	38199460	38199551	+	5.27454	NA	Intergenic	Intergenic	-7521	NM_005109	9943	Hs.475970	NM_005109	HPRD:06809	OXSR1	OSR1	oxidative stress responsive 1	protein-coding
19-PTNLD28-TUMOR_peak_37848	chr16	53468574	53468790	+	5.27454	NA	exon (NM_005611, exon 1 of 22)	exon (NM_005611, exon 1 of 22)	331	NM_005611	5934	Hs.513609	NM_005611	HPRD:01576	RBL2	P130|Rb2	retinoblastoma-like 2	protein-coding
19-PTNLD28-TUMOR_peak_69788	chr3	112012844	112013013	+	5.27292	NA	intron (NM_183061, intron 1 of 28)	intron (NM_183061, intron 1 of 28)	146	NM_183061	285335	Hs.680112	NM_183061	HPRD:11257	SLC9C1	NHE|SLC9A10|sperm-NHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding
19-PTNLD28-TUMOR_peak_55571	chr2	128422154	128422258	+	5.27292	NA	promoter-TSS (NM_017980)	promoter-TSS (NM_017980)	-39	NM_017980	55679	Hs.469881	NM_017980	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_59790	chr20	10617837	10617943	+	5.27292	NA	TTS (NM_000214)	TTS (NM_000214)	12453	NR_106930	102465525		NR_106930		MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
19-PTNLD28-TUMOR_peak_52815	chr2	54751467	54751622	+	5.27292	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-4815	NR_002229	56969	Hs.657366	NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
19-PTNLD28-TUMOR_peak_109304	chrX	118892135	118892327	+	5.27292	NA	promoter-TSS (NM_001105576)	promoter-TSS (NM_001105576)	-345	NM_001105576	347454	Hs.355223	NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
19-PTNLD28-TUMOR_peak_71888	chr3	156070044	156070132	+	5.27292	NA	intron (NM_172159, intron 1 of 13)	intron (NM_172159, intron 1 of 13)	61312	NM_172159	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_34146	chr15	68219008	68219176	+	5.27292	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-86709	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_15503	chr10	106340612	106340779	+	5.27292	NA	Intergenic	Intergenic	-60164	NM_014978	22986	Hs.671950	NM_014978	HPRD:12100	SORCS3	SORCS	sortilin-related VPS10 domain containing receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_104405	chr9	91015082	91015195	+	5.27292	NA	intron (NM_006717, intron 1 of 5)	ERVL-E-int|LTR|ERVL	11841	NM_006717	10927	Hs.146804	NM_006717	HPRD:18096	SPIN1	SPIN	spindlin 1	protein-coding
19-PTNLD28-TUMOR_peak_44598	chr18	11751481	11751596	+	5.27292	NA	promoter-TSS (NM_001142339)	promoter-TSS (NM_001142339)	67	NM_001142339	2774	Hs.136295	NM_002071	HPRD:00758	GNAL	DYT25	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	protein-coding
19-PTNLD28-TUMOR_peak_55482	chr2	123087041	123087155	+	5.27292	NA	Intergenic	Intergenic	573977	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_36419	chr16	14457027	14457149	+	5.27236	NA	Intergenic	L1MD2|LINE|L1	53946	NR_029854	100126355		NR_029854	miRBase:MI0000767	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a	microRNA 365a	ncRNA
19-PTNLD28-TUMOR_peak_94700	chr7	105706434	105706525	+	5.27160	NA	Intergenic	Intergenic	46312	NM_182715	6856	Hs.80919	NM_006754	HPRD:15459	SYPL1	H-SP1|SYPL	synaptophysin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_62483	chr20	60934648	60934793	+	5.27121	NA	intron (NM_005560, intron 2 of 79)	intron (NM_005560, intron 2 of 79)	6654	NR_109924	101928158	Hs.473256	NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_82454	chr5	137824316	137824463	+	5.26667	NA	Intergenic	Intergenic	23208	NM_001964	1958	Hs.326035	NM_001964	HPRD:00549	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
19-PTNLD28-TUMOR_peak_35602	chr16	315843	316013	+	5.26667	NA	3' UTR (NM_032039, exon 13 of 13)	3' UTR (NM_032039, exon 13 of 13)	10015	NM_183337	8786	Hs.65756	NM_003834	HPRD:04872	RGS11	RS11	regulator of G-protein signaling 11	protein-coding
19-PTNLD28-TUMOR_peak_15924	chr10	120840841	120840933	+	5.26667	NA	promoter-TSS (NM_003750)	promoter-TSS (NM_003750)	-553	NM_003750	8661	Hs.523299	NM_003750	HPRD:03618	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3, subunit A	protein-coding
19-PTNLD28-TUMOR_peak_87261	chr6	38607987	38608123	+	5.26667	NA	promoter-TSS (NM_052893)	promoter-TSS (NM_052893)	-131	NM_001099272	114781	Hs.603858	NM_052893	HPRD:12543	BTBD9	dJ322I12.1	BTB (POZ) domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_45449	chr18	43216248	43216346	+	5.26667	NA	intron (NM_007163, intron 5 of 19)	MIRb|SINE|MIR	21531	NM_007163	8170	Hs.710927	NM_007163	HPRD:03366	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 (urea transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_49879	chr19	50321187	50321343	+	5.26665	NA	promoter-TSS (NM_030973)	promoter-TSS (NM_030973)	-271	NM_030973	81857	Hs.656639	NM_030973	HPRD:14380	MED25	ACID1|ARC92|CMT2B2|P78|PTOV2	mediator complex subunit 25	protein-coding
19-PTNLD28-TUMOR_peak_9998	chr1	212780191	212780367	+	5.26224	NA	intron (NM_001030287, intron 1 of 3)	CpG	-1691	NM_001674	467	Hs.460	NM_001674	HPRD:04395	ATF3	-	activating transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_41372	chr17	38468018	38468169	+	5.26153	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	2670	NM_000964	5914	Hs.654583	NM_000964		RARA	NR1B1|RAR	retinoic acid receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_10469	chr1	226189779	226190045	+	5.26153	NA	Intergenic	Intergenic	-2846	NM_152608	163859	Hs.520192	NM_152608	HPRD:08180	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_66735	chr3	13492843	13493060	+	5.26153	NA	Intergenic	L1ME2|LINE|L1	28602	NR_046690	100874101	Hs.535701	NR_046690		HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_87478	chr6	42073681	42073822	+	5.26153	NA	exon (NM_001164446, exon 4 of 5)	exon (NM_001164446, exon 4 of 5)	36964	NM_001164446	647024	Hs.444277	NM_001164446	ENSG00000188112	C6orf132	bA7K24.2	chromosome 6 open reading frame 132	protein-coding
19-PTNLD28-TUMOR_peak_30794	chr14	65204230	65204390	+	5.26153	NA	intron (NM_015549, intron 12 of 14)	intron (NM_015549, intron 12 of 14)	33117	NM_015549	26030	Hs.509637	NM_015549	HPRD:17861	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
19-PTNLD28-TUMOR_peak_50106	chr19	52598444	52598742	+	5.25721	NA	intron (NM_001136499, intron 1 of 6)	CpG	425	NM_001136499	284371	Hs.665751	NM_001136499	ENSG00000197608	ZNF841	-	zinc finger protein 841	protein-coding
19-PTNLD28-TUMOR_peak_23627	chr12	31477849	31478192	+	5.25716	NA	non-coding (NR_026806, exon 1 of 1)	non-coding (NR_026806, exon 1 of 1)	770	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
19-PTNLD28-TUMOR_peak_3059	chr1	44445444	44445674	+	5.25649	NA	promoter-TSS (NM_030587)	promoter-TSS (NM_030587)	-49	NM_030587	8704	Hs.632403	NM_003780	HPRD:04928	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_6	chr1	28705	28795	+	5.25598	NA	intron (NR_024540, intron 1 of 10)	CpG	620	NR_024540	653635	Hs.446466	NR_024540	ENSG00000227232	WASH7P	FAM39F|WASH5P	WAS protein family homolog 7 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_51662	chr2	26568496	26568584	+	5.25570	NA	promoter-TSS (NM_033505)	promoter-TSS (NM_033505)	-414	NM_033505	85465	Hs.189073	NM_033505	HPRD:07616	EPT1	SELI|SEPI	ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	protein-coding
19-PTNLD28-TUMOR_peak_18670	chr11	57434539	57434668	+	5.25400	NA	promoter-TSS (NM_015457)	promoter-TSS (NM_015457)	-871	NM_015457	25921	Hs.27239	NM_015457	HPRD:15720	ZDHHC5	DHHC5|ZNF375	zinc finger, DHHC-type containing 5	protein-coding
19-PTNLD28-TUMOR_peak_43676	chr17	75678098	75678290	+	5.25372	NA	Intergenic	Intergenic	46447	NR_104134	100132174	Hs.640110	NR_104134		LOC100132174	-	uncharacterized LOC100132174	ncRNA
19-PTNLD28-TUMOR_peak_42117	chr17	47418818	47418909	+	5.25372	NA	intron (NM_014897, intron 1 of 5)	AluJb|SINE|Alu	-19664	NR_110884	102724596	Hs.559253	NR_110882		LOC102724596	-	uncharacterized LOC102724596	ncRNA
19-PTNLD28-TUMOR_peak_23116	chr12	12890180	12890268	+	5.25372	NA	intron (NM_001130415, intron 1 of 1)	intron (NM_001130415, intron 1 of 1)	11373	NM_001130415	81575	Hs.23388	NM_030817	HPRD:13153	APOLD1	VERGE	apolipoprotein L domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_2208	chr1	33565007	33565095	+	5.25372	NA	intron (NM_001293562, intron 9 of 10)	intron (NM_001293562, intron 9 of 10)	18337	NM_001293562	113451	Hs.101807	NM_052998	HPRD:17657	AZIN2	ADC|AZI2|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_34603	chr15	76050747	76050938	+	5.25372	NA	Intergenic	Intergenic	3814	NR_036198	100423035		NR_036198	miRBase:MI0015843	MIR4313	-	microRNA 4313	ncRNA
19-PTNLD28-TUMOR_peak_69972	chr3	116163927	116164015	+	5.25372	NA	5' UTR (NM_002338, exon 1 of 7)	5' UTR (NM_002338, exon 1 of 7)	414	NM_002338	4045	Hs.26409	NM_002338	HPRD:09128	LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_91183	chr7	6566287	6566375	+	5.25372	NA	exon (NM_001145118, exon 3 of 22)	exon (NM_001145118, exon 3 of 22)	24736	NM_001145118	392862	Hs.512174	NM_001145118		GRID2IP	DELPHILIN	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_85906	chr6	22113423	22113638	+	5.25372	NA	intron (NR_015410, intron 9 of 11)	intron (NR_015410, intron 9 of 11)	33892	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	CASC14	-	cancer susceptibility candidate 14 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_102992	chr9	37540716	37540892	+	5.25372	NA	intron (NM_012166, intron 2 of 10)	intron (NM_012166, intron 2 of 10)	35446	NM_012166	26267	Hs.709527	NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
19-PTNLD28-TUMOR_peak_85508	chr6	13625177	13625265	+	5.25372	NA	intron (NM_005493, intron 13 of 13)	intron (NM_005493, intron 13 of 13)	9662	NM_016167	51406	Hs.306242	NM_016167		NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7, 27kDa	protein-coding
19-PTNLD28-TUMOR_peak_59631	chr20	4582270	4582515	+	5.25372	NA	Intergenic	Intergenic	-84405	NM_001080121	5621	Hs.472010	NM_000311	HPRD:01453	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
19-PTNLD28-TUMOR_peak_20290	chr11	78930300	78930491	+	5.25372	NA	intron (NM_001098816, intron 2 of 33)	intron (NM_001098816, intron 2 of 33)	182758	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_89447	chr6	130342332	130342430	+	5.25372	NA	intron (NM_001007102, intron 1 of 21)	CpG	2653	NM_001007102	84456	Hs.658051	NM_032438	HPRD:11222	L3MBTL3	MBT-1|MBT1	l(3)mbt-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_71527	chr3	146465895	146465983	+	5.25372	NA	Intergenic	Intergenic	-141936	NM_001085420	389158	Hs.254692	NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_80644	chr5	73046145	73046286	+	5.25372	NA	intron (NM_001080479, intron 3 of 36)	intron (NM_001080479, intron 3 of 36)	-63128	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_32516	chr15	22176053	22176157	+	5.25372	NA	Intergenic	Intergenic	-30303	NR_028506	440225	Hs.722451	NR_028506	ENSG00000258997	NF1P2	NF1HHS	neurofibromin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_16273	chr10	131265966	131266054	+	5.25202	NA	intron (NM_002412, intron 1 of 4)	intron (NM_002412, intron 1 of 4)	556	NM_002412	4255	Hs.501522	NM_002412		MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_2160	chr1	33195610	33195748	+	5.25202	NA	Intergenic	Intergenic	-11833	NM_020888	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
19-PTNLD28-TUMOR_peak_22424	chr12	1583511	1583626	+	5.25202	NA	intron (NR_027949, intron 15 of 15)	intron (NR_027949, intron 15 of 15)	-26089	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
19-PTNLD28-TUMOR_peak_51444	chr2	20397818	20398075	+	5.25202	NA	Intergenic	Intergenic	26981	NM_002997	6382	Hs.224607	NM_002997	HPRD:01718	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
19-PTNLD28-TUMOR_peak_98791	chr8	55047413	55047546	+	5.25202	NA	promoter-TSS (NM_014175)	promoter-TSS (NM_014175)	-302	NM_014175	29088	Hs.18349	NM_014175		MRPL15	L15mt|MRP-L15|MRP-L7|RPML7	mitochondrial ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_100395	chr8	121132363	121132473	+	5.25062	NA	Intergenic	Intergenic	-4929	NM_021110	7373	Hs.409662	NM_021110	HPRD:00379	COL14A1	UND	collagen, type XIV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_51230	chr2	12956642	12956768	+	5.25062	NA	Intergenic	Intergenic	79212	NR_036072	100422986		NR_036072		MIR3125	-	microRNA 3125	ncRNA
19-PTNLD28-TUMOR_peak_40055	chr17	8030072	8030335	+	5.25062	NA	Intergenic	Intergenic	-2793	NM_001165967	84667	Hs.434828	NM_032580	HPRD:09729	HES7	SCDO4|bHLHb37	hes family bHLH transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_34767	chr15	80445320	80445431	+	5.25062	NA	5' UTR (NM_000137, exon 1 of 14)	5' UTR (NM_000137, exon 1 of 14)	142	NM_000137	2184	Hs.73875	NM_000137	HPRD:02040	FAH	-	fumarylacetoacetate hydrolase (fumarylacetoacetase)	protein-coding
19-PTNLD28-TUMOR_peak_54428	chr2	99392240	99392335	+	5.24653	NA	Intergenic	Intergenic	-44698	NM_012214	11320	Hs.177576	NM_012214	HPRD:06860	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	protein-coding
19-PTNLD28-TUMOR_peak_63650	chr21	42539819	42540079	+	5.24653	NA	TTS (NR_036167)	TTS (NR_036167)	221	NM_138992	25825	Hs.43047	NM_012105	HPRD:05744	BACE2	AEPLC|ALP56|ASP1|ASP21|BAE2|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding
19-PTNLD28-TUMOR_peak_88567	chr6	84737226	84737417	+	5.24636	NA	Intergenic	Intergenic	-6099	NM_138409	112609	Hs.370055	NM_138409	HPRD:12843	MRAP2	BMIQ18|C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18070	chr11	35640684	35640909	+	5.24636	NA	exon (NM_014344, exon 1 of 1)	exon (NM_014344, exon 1 of 1)	1061	NM_014344	24147	Hs.39384	NM_014344	HPRD:16897	FJX1	-	four jointed box 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_73223	chr3	191048274	191048398	+	5.24636	NA	promoter-TSS (NM_198152)	promoter-TSS (NM_198152)	-11	NM_198152	257313	Hs.518492	NM_198152	HPRD:15630	UTS2B	U2B|URP|UTS2D	urotensin 2B	protein-coding
19-PTNLD28-TUMOR_peak_75787	chr4	77624928	77625060	+	5.24636	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	130273	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_60332	chr20	25834574	25834743	+	5.24636	NA	promoter-TSS (NR_110001)	promoter-TSS (NR_110001)	-1	NR_110001	101926935	Hs.737440	NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
19-PTNLD28-TUMOR_peak_51606	chr2	25474645	25474894	+	5.24463	NA	intron (NM_153759, intron 1 of 18)	CpG	415	NM_153759	1788	Hs.515840	NM_022552	HPRD:04141	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA (cytosine-5-)-methyltransferase 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_8750	chr1	183299559	183299664	+	5.24463	NA	intron (NM_015039, intron 1 of 10)	intron (NM_015039, intron 1 of 10)	-25602	NM_170706	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_68851	chr3	66550664	66550889	+	5.24463	NA	promoter-TSS (NM_015541)	promoter-TSS (NM_015541)	69	NM_015541	26018	Hs.518055	NM_015541	HPRD:10057	LRIG1	LIG-1|LIG1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_42547	chr17	56065545	56065638	+	5.24463	NA	promoter-TSS (NM_007146)	promoter-TSS (NM_007146)	24	NM_007146	7716	Hs.463569	NM_007146		VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_32934	chr15	32907359	32907456	+	5.24463	NA	promoter-TSS (NM_014783)	promoter-TSS (NM_014783)	62	NM_001286479	9824	Hs.591130	NM_014783	HPRD:10656	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding
19-PTNLD28-TUMOR_peak_84033	chr5	172385790	172385917	+	5.24255	NA	promoter-TSS (NM_016093)	promoter-TSS (NM_016093)	-75	NR_026683	100268168	Hs.519766	NR_026682	ENSG00000204758	LOC100268168	-	uncharacterized LOC100268168	ncRNA
19-PTNLD28-TUMOR_peak_7023	chr1	153869130	153869218	+	5.23950	NA	intron (NM_020699, intron 1 of 10)	AluSp|SINE|Alu	26277	NM_020699	57459	Hs.4779	NM_020699	HPRD:15094	GATAD2B	MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_30300	chr14	52734291	52734403	+	5.23950	NA	promoter-TSS (NM_001281469)	promoter-TSS (NM_001281469)	-84	NM_001281469	5729	Hs.306831	NM_000953	HPRD:05254	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor (DP)	protein-coding
19-PTNLD28-TUMOR_peak_62108	chr20	52790829	52790926	+	5.23950	NA	promoter-TSS (NM_001128915)	promoter-TSS (NM_001128915)	-361	NM_001128915	1591	Hs.89663	NM_000782	HPRD:00522	CYP24A1	CP24|CYP24|HCAI|P450-CC24	cytochrome P450, family 24, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_33723	chr15	58439466	58439649	+	5.23950	NA	intron (NM_020980, intron 1 of 5)	intron (NM_020980, intron 1 of 5)	9149	NM_020980	366	Hs.104624	NM_020980	HPRD:04223	AQP9	AQP-9|HsT17287|SSC1	aquaporin 9	protein-coding
19-PTNLD28-TUMOR_peak_429	chr1	7211115	7211203	+	5.23950	NA	intron (NM_015215, intron 4 of 22)	intron (NM_015215, intron 4 of 22)	365775	NR_038934	23261	Hs.397705	NM_015215	HPRD:16681	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
19-PTNLD28-TUMOR_peak_25974	chr12	105711379	105711475	+	5.23950	NA	Intergenic	Intergenic	-12987	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_109501	chrX	132549657	132549868	+	5.23950	NA	promoter-TSS (NM_001448)	promoter-TSS (NM_001448)	-557	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
19-PTNLD28-TUMOR_peak_67190	chr3	24179522	24179800	+	5.23950	NA	intron (NM_001128176, intron 8 of 10)	intron (NM_001128176, intron 8 of 10)	-13154	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA
19-PTNLD28-TUMOR_peak_21110	chr11	111312230	111312449	+	5.23950	NA	Intergenic	Intergenic	-23428	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
19-PTNLD28-TUMOR_peak_36785	chr16	22359785	22359877	+	5.23950	NA	intron (NM_001802, intron 4 of 4)	MER5B|DNA|hAT-Charlie	26107	NM_001802	1039	Hs.513430	NM_001802	HPRD:06681	CDR2	CDR62|Yo	cerebellar degeneration-related protein 2, 62kDa	protein-coding
19-PTNLD28-TUMOR_peak_80708	chr5	73928140	73928264	+	5.23950	NA	intron (NR_046318, intron 1 of 1)	intron (NR_046318, intron 1 of 1)	-7646	NM_001292004	3074	Hs.69293	NM_000521	HPRD:06043	HEXB	ENC-1AS|HEL-248	hexosaminidase B (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_48879	chr19	38768768	38768856	+	5.23950	NA	intron (NM_001166103, intron 1 of 5)	intron (NM_001166103, intron 1 of 5)	13714	NM_021102	10653	Hs.31439	NM_021102	HPRD:05495	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type, 2	protein-coding
19-PTNLD28-TUMOR_peak_64449	chr22	20610729	20610851	+	5.23950	NA	Intergenic	Intergenic	-137615	NM_003426	7625	Hs.517418	NM_003426	HPRD:01928	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
19-PTNLD28-TUMOR_peak_30741	chr14	64389914	64390053	+	5.23950	NA	intron (NM_182914, intron 2 of 115)	intron (NM_182914, intron 2 of 115)	70300	NM_182914	23224	Hs.745014	NM_015180	HPRD:09763	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing, nuclear envelope 2	protein-coding
19-PTNLD28-TUMOR_peak_82972	chr5	145724400	145724515	+	5.23950	NA	Intergenic	CpG	5870	NM_002700	5459	Hs.553499	NM_002700	HPRD:03911	POU4F3	BRN3C|DFNA15	POU class 4 homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_12641	chr10	29446076	29446277	+	5.23738	NA	Intergenic	Intergenic	-131814	NM_032517	84569	Hs.558572	NM_032517	HPRD:14336	LYZL1	KAAG648|LYC2|PRO1278|bA534G20.1	lysozyme-like 1	protein-coding
19-PTNLD28-TUMOR_peak_8551	chr1	180143332	180143432	+	5.23738	NA	intron (NM_001004128, intron 2 of 12)	intron (NM_001004128, intron 2 of 12)	19414	NM_001004128	5768	Hs.744925	NM_002826	HPRD:06785	QSOX1	Q6|QSCN6	quiescin Q6 sulfhydryl oxidase 1	protein-coding
19-PTNLD28-TUMOR_peak_41848	chr17	43818043	43818131	+	5.23496	NA	intron (NM_001256299, intron 3 of 14)	intron (NM_001256299, intron 3 of 14)	-43559	NM_001145146	1394	Hs.417628	NM_004382	HPRD:08830	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f	corticotropin releasing hormone receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_8817	chr1	184168319	184168440	+	5.23496	NA	Intergenic	Intergenic	147594	NR_125335	116461	Hs.548197	NM_052965	HPRD:12292	TSEN15	C1orf19|sen15	TSEN15 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_95220	chr7	129442196	129442296	+	5.23496	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-27392	NR_029615	406959		NR_029615	miRBase:MI0000273	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
19-PTNLD28-TUMOR_peak_83597	chr5	159436393	159436641	+	5.23496	NA	intron (NM_003314, intron 1 of 7)	intron (NM_003314, intron 1 of 7)	410	NM_003314	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_39058	chr16	84077578	84077676	+	5.23496	NA	Intergenic	MIR|SINE|MIR	-1865	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FVH2	solute carrier family 38, member 8	protein-coding
19-PTNLD28-TUMOR_peak_21416	chr11	117016319	117016407	+	5.23496	NA	intron (NR_110282, intron 1 of 2)	intron (NR_110282, intron 1 of 2)	1363	NM_001184746	5049	Hs.728488	NM_002572	HPRD:03940	PAFAH1B2	HEL-S-303	platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)	protein-coding
19-PTNLD28-TUMOR_peak_68896	chr3	69129034	69129129	+	5.23496	NA	intron (NM_198195, intron 1 of 16)	CpG	443	NM_198195	9039	Hs.154320	NM_003968	HPRD:04413	UBA3	NAE2|UBE1C|hUBA3	ubiquitin-like modifier activating enzyme 3	protein-coding
19-PTNLD28-TUMOR_peak_7365	chr1	156736557	156736747	+	5.23322	NA	promoter-TSS (NM_005973)	promoter-TSS (NM_005973)	-622	NM_005973	5546	Hs.516948	NM_005973	HPRD:01562	PRCC	RCCP1|TPRC	papillary renal cell carcinoma (translocation-associated)	protein-coding
19-PTNLD28-TUMOR_peak_61794	chr20	48938382	48938740	+	5.23322	NA	promoter-TSS (NR_109950)	promoter-TSS (NR_109950)	-682	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
19-PTNLD28-TUMOR_peak_67560	chr3	38073215	38073455	+	5.23228	NA	Intergenic	Intergenic	-2181	NM_006225	5333	Hs.80776	NM_006225	HPRD:09073	PLCD1	NDNC3|PLC-III	phospholipase C, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_35281	chr15	92484395	92484581	+	5.23060	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	87550	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_64250	chr22	18405240	18405359	+	5.23060	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-15647	NM_001136004	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_104918	chr9	101017602	101017705	+	5.22941	NA	exon (NM_001267571, exon 1 of 13)	exon (NM_001267571, exon 1 of 13)	350	NR_051978	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_55354	chr2	121225913	121226033	+	5.22941	NA	Intergenic	Intergenic	-2048	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_29460	chr14	23292426	23292537	+	5.22734	NA	Intergenic	Intergenic	-3461	NM_001126106	9056	Hs.513147	NM_003982	HPRD:04667	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	protein-coding
19-PTNLD28-TUMOR_peak_56601	chr2	161083943	161084063	+	5.22734	NA	Intergenic	L2a|LINE|L2	-27179	NM_001282388	3694	Hs.470399	NM_000888	HPRD:00947	ITGB6	-	integrin, beta 6	protein-coding
19-PTNLD28-TUMOR_peak_42544	chr17	56064623	56064722	+	5.22734	NA	intron (NM_007146, intron 1 of 5)	intron (NM_007146, intron 1 of 5)	943	NM_007146	7716	Hs.463569	NM_007146		VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_89808	chr6	144607259	144607560	+	5.22584	NA	Intergenic	CpG	-5464	NM_007124	7402	Hs.133135	NM_007124	HPRD:00547	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19-PTNLD28-TUMOR_peak_13506	chr10	49732382	49732488	+	5.22584	NA	intron (NR_045675, intron 4 of 10)	CpG	-30743	NM_001256026	58504	Hs.655672	NM_021226	HPRD:12476	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
19-PTNLD28-TUMOR_peak_88237	chr6	71122665	71122764	+	5.22584	NA	promoter-TSS (NM_001105531)	promoter-TSS (NM_001105531)	-393	NM_020819	57579	Hs.211700	NM_020819	HPRD:11144	FAM135A	KIAA1411	family with sequence similarity 135, member A	protein-coding
19-PTNLD28-TUMOR_peak_10229	chr1	222651091	222651206	+	5.22584	NA	Intergenic	Intergenic	70296	NM_024746	79802	Hs.665660	NM_024746	HPRD:08587	HHIPL2	KIAA1822L	HHIP-like 2	protein-coding
19-PTNLD28-TUMOR_peak_2595	chr1	39212871	39213018	+	5.22523	NA	Intergenic	Intergenic	112551	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_3095	chr1	44967263	44967355	+	5.22523	NA	intron (NM_018150, intron 2 of 14)	intron (NM_018150, intron 2 of 14)	-43856	NR_049849	100847089		NR_049849		MIR5584	-	microRNA 5584	ncRNA
19-PTNLD28-TUMOR_peak_31070	chr14	70163735	70163868	+	5.22523	NA	intron (NM_014734, intron 2 of 5)	MER41B|LTR|ERV1	-70028	NM_001039465	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine/arginine-rich splicing factor 5	protein-coding
19-PTNLD28-TUMOR_peak_76152	chr4	87825107	87825217	+	5.22523	NA	Intergenic	LTR12D|LTR|ERV1	-11587	NM_144645	132989	Hs.339646	NM_144645	HPRD:14511	C4orf36	-	chromosome 4 open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_9887	chr1	209822781	209822869	+	5.22523	NA	intron (NM_001017402, intron 2 of 21)	intron (NM_001017402, intron 2 of 21)	1854	NM_001017402	3914	Hs.497636	NM_000228	HPRD:01032	LAMB3	BM600-125KDA|LAM5|LAMNB1	laminin, beta 3	protein-coding
19-PTNLD28-TUMOR_peak_85146	chr6	7243726	7243938	+	5.22523	NA	intron (NM_001003700, intron 11 of 11)	intron (NM_001003700, intron 11 of 11)	69715	NM_001292008	6745	Hs.114033	NM_003144	HPRD:02924	SSR1	TRAPA	signal sequence receptor, alpha	protein-coding
19-PTNLD28-TUMOR_peak_90362	chr6	160257906	160258410	+	5.22523	NA	Intergenic	LTR33A|LTR|ERVL	36877	NM_001271862	154197	Hs.349077	NM_173516	HPRD:17868	PNLDC1	-	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38469	chr16	69166699	69166787	+	5.22331	NA	promoter-TSS (NM_001040146)	promoter-TSS (NM_001040146)	244	NM_032830	84916	Hs.461113	NM_032830	HPRD:08468	CIRH1A	CIRHIN|NAIC|TEX292|UTP4	cirrhosis, autosomal recessive 1A (cirhin)	protein-coding
19-PTNLD28-TUMOR_peak_63918	chr21	45503122	45503244	+	5.22331	NA	exon (NM_003274, exon 14 of 23)	exon (NM_003274, exon 14 of 23)	-24025	NM_005049	5822	Hs.449076	NM_005049	HPRD:03279	PWP2	EHOC-17|PWP2H|UTP1	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_35711	chr16	1311574	1311667	+	5.22331	NA	Intergenic	Intergenic	5347	NM_012217	23430	Hs.677789	NM_012217	HPRD:08345	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
19-PTNLD28-TUMOR_peak_2902	chr1	42642738	42642876	+	5.22331	NA	3' UTR (NM_001198852, exon 12 of 12)	3' UTR (NM_001198852, exon 12 of 12)	-12412	NM_033553	2980	Hs.778	NM_033553	HPRD:00767	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A (guanylin)	protein-coding
19-PTNLD28-TUMOR_peak_55693	chr2	131031224	131031326	+	5.22331	NA	Intergenic	Intergenic	68681	NM_032357	84317	Hs.104203	NM_032357	HPRD:14428	CCDC115	ccp1	coiled-coil domain containing 115	protein-coding
19-PTNLD28-TUMOR_peak_18253	chr11	44587162	44587253	+	5.22148	NA	promoter-TSS (NM_002231)	promoter-TSS (NM_002231)	66	NM_001024844	3732	Hs.527778	NM_002231		CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
19-PTNLD28-TUMOR_peak_12093	chr10	13390382	13390672	+	5.21868	NA	promoter-TSS (NM_001195602)	promoter-TSS (NM_001195602)	-229	NM_012247	22929	Hs.124027	NM_012247	HPRD:02944	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
19-PTNLD28-TUMOR_peak_43528	chr17	74137964	74138071	+	5.21868	NA	promoter-TSS (NM_001454)	promoter-TSS (NM_001454)	-637	NM_001454	2302	Hs.651204	NM_001454	HPRD:03798	FOXJ1	FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
19-PTNLD28-TUMOR_peak_53566	chr2	74709678	74709790	+	5.21868	NA	promoter-TSS (NM_022492)	promoter-TSS (NM_022492)	-466	NR_027749	64427	Hs.557709	NM_022492	HPRD:07797	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
19-PTNLD28-TUMOR_peak_50139	chr19	53104062	53104202	+	5.21868	NA	TTS (NR_023311)	TTS (NR_023311)	4195	NR_023311	7696	Hs.373648	NM_003438		ZNF137P	ZNF137|pHZ-30	zinc finger protein 137, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_71509	chr3	145969461	145969619	+	5.21868	NA	promoter-TSS (NM_001128305)	promoter-TSS (NM_001128305)	-574	NM_001128306	57088	Hs.477869	NM_020353	HPRD:07401	PLSCR4	TRA1	phospholipid scramblase 4	protein-coding
19-PTNLD28-TUMOR_peak_79168	chr5	17585668	17585784	+	5.21737	NA	Intergenic	Intergenic	-198307	NR_033975	401177	Hs.508311	NR_033975	ENSG00000250822	LOC401177	-	uncharacterized LOC401177	ncRNA
19-PTNLD28-TUMOR_peak_19218	chr11	64880030	64880210	+	5.21610	NA	TTS (NM_013265)	TTS (NM_013265)	794	NM_003273	7108	Hs.31130	NM_003273	HPRD:04564	TM7SF2	ANG1|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
19-PTNLD28-TUMOR_peak_3140	chr1	45476533	45476670	+	5.21610	NA	exon (NM_024602, exon 1 of 21)	exon (NM_024602, exon 1 of 21)	426	NM_024602	79654	Hs.525084	NM_024602	HPRD:13383	HECTD3	-	HECT domain containing E3 ubiquitin protein ligase 3	protein-coding
19-PTNLD28-TUMOR_peak_62591	chr20	62184775	62185192	+	5.21546	NA	intron (NM_024059, intron 1 of 1)	intron (NM_024059, intron 1 of 1)	610	NM_024059	79025	Hs.197755	NM_024059	HPRD:14682	C20orf195	-	chromosome 20 open reading frame 195	protein-coding
19-PTNLD28-TUMOR_peak_55257	chr2	119670965	119671224	+	5.21467	NA	Intergenic	LTR39|LTR|ERV1	-28651	NM_006770	8685	Hs.67726	NM_006770	HPRD:05337	MARCO	SCARA2	macrophage receptor with collagenous structure	protein-coding
19-PTNLD28-TUMOR_peak_55171	chr2	115569964	115570148	+	5.21434	NA	intron (NM_001178036, intron 2 of 26)	AluJr|SINE|Alu	-252191	NM_001178037	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_8927	chr1	186892601	186893011	+	5.21434	NA	intron (NM_024420, intron 7 of 17)	intron (NM_024420, intron 7 of 17)	94774	NM_024420	5321	Hs.497200	NM_024420	HPRD:08986	PLA2G4A	PLA2G4|cPLA2-alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
19-PTNLD28-TUMOR_peak_31623	chr14	90164558	90164654	+	5.21434	NA	Intergenic	Intergenic	-79112	NM_001085471	1112	Hs.434286	NM_005197	HPRD:07533	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19-PTNLD28-TUMOR_peak_34046	chr15	66233031	66233165	+	5.21434	NA	intron (NM_032445, intron 10 of 22)	intron (NM_032445, intron 10 of 22)	71301	NM_004663	8766	Hs.321541	NM_004663	HPRD:05715	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_47287	chr19	11128986	11129096	+	5.21434	NA	intron (NM_001128844, intron 17 of 35)	intron (NM_001128844, intron 17 of 35)	34213	NM_001128845	6597	Hs.327527	NM_003072	HPRD:04459	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
19-PTNLD28-TUMOR_peak_88946	chr6	106440431	106440539	+	5.21434	NA	Intergenic	Intergenic	-93710	NM_001198	639	Hs.436023	NM_001198	HPRD:04572	PRDM1	BLIMP1|PRDI-BF1	PR domain containing 1, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_4841	chr1	91893389	91893481	+	5.21434	NA	Intergenic	L1PA8|LINE|L1	-23009	NM_001017975	164045	Hs.454818	NM_001017975	HPRD:13423	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_29167	chr13	114053883	114053976	+	5.21434	NA	Intergenic	Intergenic	-35466	NM_001286733	79774	Hs.745043	NM_024719	HPRD:17080	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
19-PTNLD28-TUMOR_peak_1769	chr1	27709736	27709885	+	5.21434	NA	promoter-TSS (NM_207397)	promoter-TSS (NM_207397)	13	NM_207397	388611	Hs.664836	NM_207397	HPRD:15619	CD164L2	EAPG6122|UNQ6122	CD164 sialomucin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_27236	chr12	132040192	132040416	+	5.21434	NA	Intergenic	Intergenic	-155328	NM_004592	6433	Hs.308171	NM_004592	HPRD:09055	SFSWAP	SFRS8|SWAP	splicing factor, suppressor of white-apricot family	protein-coding
19-PTNLD28-TUMOR_peak_48205	chr19	20995900	20996096	+	5.21434	NA	Intergenic	L1PA3|LINE|L1	-110061	NR_045830	7639	Hs.37138	NM_003429	HPRD:04875	ZNF85	HPF4|HTF1	zinc finger protein 85	protein-coding
19-PTNLD28-TUMOR_peak_98915	chr8	59058635	59058755	+	5.21434	NA	5' UTR (NM_147189, exon 5 of 5)	5' UTR (NM_147189, exon 5 of 5)	125965	NR_105005	101929528	Hs.563551	NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
19-PTNLD28-TUMOR_peak_67285	chr3	27763761	27763916	+	5.21434	NA	5' UTR (NM_005442, exon 1 of 6)	5' UTR (NM_005442, exon 1 of 6)	368	NM_001278182	8320	Hs.591663	NM_005442	HPRD:07054	EOMES	TBR2	eomesodermin	protein-coding
19-PTNLD28-TUMOR_peak_23154	chr12	13197586	13197702	+	5.21434	NA	intron (NM_020853, intron 1 of 12)	CpG	329	NM_020853	57613	Hs.132660	NM_020853	HPRD:11149	KIAA1467	-	KIAA1467	protein-coding
19-PTNLD28-TUMOR_peak_85592	chr6	15474559	15474647	+	5.21434	NA	intron (NM_001267040, intron 5 of 17)	intron (NM_001267040, intron 5 of 17)	188686	NR_036448	84062	Hs.571148	NM_032122	HPRD:06190	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_62012	chr20	51765672	51765821	+	5.21434	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	-36076	NM_001193421	128553	Hs.473117	NM_173485	HPRD:10730	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_88143	chr6	56912117	56912333	+	5.21260	NA	intron (NM_001286274, intron 2 of 2)	intron (NM_001286274, intron 2 of 2)	680	NM_001286276	57691	Hs.709521	NM_020931	HPRD:17218	KIAA1586	-	KIAA1586	protein-coding
19-PTNLD28-TUMOR_peak_2692	chr1	40311508	40311622	+	5.20641	NA	intron (NM_017646, intron 8 of 10)	intron (NM_017646, intron 8 of 10)	37612	NM_017646	54802	Hs.356554	NM_017646	HPRD:18226	TRIT1	IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_84759	chr6	1797588	1797759	+	5.20641	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	186992	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_104903	chr9	100798056	100798160	+	5.20641	NA	Intergenic	Intergenic	-20851	NM_018946	54187	Hs.522310	NM_018946	HPRD:07285	NANS	HEL-S-100|SAS	N-acetylneuraminic acid synthase	protein-coding
19-PTNLD28-TUMOR_peak_61937	chr20	50361210	50361357	+	5.20641	NA	intron (NM_006045, intron 1 of 27)	intron (NM_006045, intron 1 of 27)	23625	NM_006045	10079	Hs.649234	NM_006045	HPRD:18541	ATP9A	ATPIIA	ATPase, class II, type 9A	protein-coding
19-PTNLD28-TUMOR_peak_17955	chr11	34004237	34004395	+	5.20641	NA	Intergenic	Intergenic	-68914	NM_005898	4076	Hs.471818	NM_005898	HPRD:03108	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_41862	chr17	44050613	44050739	+	5.20641	NA	intron (NM_001123067, intron 3 of 10)	intron (NM_001123067, intron 3 of 10)	-25940	NM_001007532	246744	Hs.661831	NM_001007532	HPRD:06142	STH	MAPTIT	saitohin	protein-coding
19-PTNLD28-TUMOR_peak_106301	chr9	131495593	131495768	+	5.20641	NA	TTS (NR_046240)	TTS (NR_046240)	8939	NR_046240	100506100	Hs.62946	NR_046240	ENSG00000223478	LOC100506100	-	uncharacterized LOC100506100	ncRNA
19-PTNLD28-TUMOR_peak_8445	chr1	178261389	178261493	+	5.20641	NA	intron (NM_170692, intron 2 of 17)	intron (NM_170692, intron 2 of 17)	-49165	NM_004841	9462	Hs.496139	NM_004841	HPRD:05845	RASAL2	NGAP	RAS protein activator like 2	protein-coding
19-PTNLD28-TUMOR_peak_48408	chr19	30067113	30067233	+	5.20641	NA	Intergenic	Intergenic	-29997	NM_006627	10775	Hs.412870	NM_006627		POP4	RPP29	processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_106288	chr9	131390821	131390914	+	5.20641	NA	intron (NM_001195532, intron 49 of 54)	intron (NM_001195532, intron 49 of 54)	28262	NM_052844	89891	Hs.495240	NM_052844	HPRD:15666	WDR34	DIC5|FAP133|SRTD11|bA216B9.3	WD repeat domain 34	protein-coding
19-PTNLD28-TUMOR_peak_98268	chr8	38411508	38411663	+	5.20641	NA	Intergenic	Intergenic	-25405	NM_207412	389649	Hs.546586	NM_207412	HPRD:13474	C8orf86	-	chromosome 8 open reading frame 86	protein-coding
19-PTNLD28-TUMOR_peak_101259	chr8	136910507	136910595	+	5.20641	NA	Intergenic	Intergenic	440835	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_39527	chr16	90085010	90085184	+	5.20482	NA	promoter-TSS (NM_001286209)	promoter-TSS (NM_001286209)	866	NM_001042610	79007	Hs.301394	NM_024043	HPRD:08327	DBNDD1	-	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_90846	chr7	1577730	1577943	+	5.20272	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	7468	NM_002360	7975	Hs.520612	NM_002360	HPRD:02561	MAFK	NFE2U|P18	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K	protein-coding
19-PTNLD28-TUMOR_peak_72736	chr3	183873018	183873324	+	5.20034	NA	promoter-TSS (NM_004423)	promoter-TSS (NM_004423)	-113	NM_004423	1857	Hs.388116	NM_004423	HPRD:03222	DVL3	-	dishevelled segment polarity protein 3	protein-coding
19-PTNLD28-TUMOR_peak_72739	chr3	183874577	183874753	+	5.20034	NA	intron (NM_004423, intron 1 of 14)	intron (NM_004423, intron 1 of 14)	1381	NM_004423	1857	Hs.388116	NM_004423	HPRD:03222	DVL3	-	dishevelled segment polarity protein 3	protein-coding
19-PTNLD28-TUMOR_peak_92683	chr7	56033784	56033886	+	5.20034	NA	intron (NM_001202469, intron 1 of 7)	L2a|LINE|L2	1565	NM_001483	2631	Hs.591069	NM_001483	HPRD:04302	GBAS	NIPSNAP2	glioblastoma amplified sequence	protein-coding
19-PTNLD28-TUMOR_peak_23275	chr12	16500403	16500682	+	5.20033	NA	promoter-TSS (NM_020300)	promoter-TSS (NM_020300)	-35	NM_001260512	4257	Hs.389700	NM_020300	HPRD:00705	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding
19-PTNLD28-TUMOR_peak_7508	chr1	159141785	159142035	+	5.20033	NA	intron (NM_001127173, intron 1 of 8)	intron (NM_001127173, intron 1 of 8)	496	NM_001127173	57863	Hs.365689	NM_021189	HPRD:13733	CADM3	BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding
19-PTNLD28-TUMOR_peak_57431	chr2	190420082	190420287	+	5.20033	NA	Intergenic	HAL1|LINE|L1	25353	NM_014585	30061	Hs.643005	NM_014585	HPRD:05229	SLC40A1	FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_98022	chr8	30242296	30242635	+	5.20033	NA	5' UTR (NM_006867, exon 1 of 10)	5' UTR (NM_006867, exon 1 of 10)	448	NM_006867	11030	Hs.334587	NM_006867	HPRD:11870	RBPMS	HERMES	RNA binding protein with multiple splicing	protein-coding
19-PTNLD28-TUMOR_peak_16606	chr11	1785095	1785391	+	5.20033	NA	promoter-TSS (NM_001909)	promoter-TSS (NM_001909)	-21	NM_001909	1509	Hs.654447	NM_001909	HPRD:00291	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
19-PTNLD28-TUMOR_peak_58829	chr2	232505431	232505609	+	5.19926	NA	Intergenic	Intergenic	47945	NM_152614	165100	Hs.98104	NM_152614	HPRD:14602	C2orf57	-	chromosome 2 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_60786	chr20	35036763	35036851	+	5.19490	NA	intron (NM_014902, intron 2 of 12)	LTR16C|LTR|ERVL	-53011	NM_001042486	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_29620	chr14	24906019	24906113	+	5.19490	NA	intron (NM_001290257, intron 7 of 7)	intron (NM_001290257, intron 7 of 7)	5593	NM_001290293	56948	Hs.643552	NM_020195	HPRD:16598	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U, member 1	protein-coding
19-PTNLD28-TUMOR_peak_85379	chr6	11785785	11786129	+	5.19490	NA	Intergenic	Intergenic	-6677	NM_032744	84830	Hs.126409	NM_032744	HPRD:12836	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen-dependent TFPI-regulating protein	protein-coding
19-PTNLD28-TUMOR_peak_3273	chr1	47400698	47400813	+	5.19490	NA	exon (NM_000778, exon 6 of 12)	exon (NM_000778, exon 6 of 12)	6401	NM_000778	1579	Hs.1645	NM_000778	HPRD:03201	CYP4A11	CP4Y|CYP4A2|CYP4AII	cytochrome P450, family 4, subfamily A, polypeptide 11	protein-coding
19-PTNLD28-TUMOR_peak_68271	chr3	51422072	51422160	+	5.19359	NA	promoter-TSS (NM_006010)	promoter-TSS (NM_006010)	-552	NM_006010	7873	Hs.436446	NM_006010	HPRD:03558	MANF	ARMET|ARP	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
19-PTNLD28-TUMOR_peak_46931	chr19	6744751	6744923	+	5.19024	NA	exon (NM_004240, exon 9 of 14)	exon (NM_004240, exon 9 of 14)	5144	NR_110231	9322	Hs.515094	NM_004240	HPRD:05142	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
19-PTNLD28-TUMOR_peak_29485	chr14	23503723	23503944	+	5.18552	NA	intron (NM_001130725, intron 1 of 2)	intron (NM_001130725, intron 1 of 2)	521	NM_001144932	5693	Hs.422990	NM_002797	HPRD:02629	PSMB5	LMPX|MB1|X	proteasome (prosome, macropain) subunit, beta type, 5	protein-coding
19-PTNLD28-TUMOR_peak_92441	chr7	47596288	47596447	+	5.18359	NA	intron (NM_022748, intron 1 of 30)	intron (NM_022748, intron 1 of 30)	25375	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_30670	chr14	62024086	62024266	+	5.18359	NA	intron (NR_110417, intron 3 of 3)	L3|LINE|CR1	12736	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
19-PTNLD28-TUMOR_peak_29097	chr13	111567066	111567168	+	5.18334	NA	exon (NM_017664, exon 1 of 6)	exon (NM_017664, exon 1 of 6)	337	NM_017664	55608	Hs.525163	NM_017664	HPRD:12455	ANKRD10	-	ankyrin repeat domain 10	protein-coding
19-PTNLD28-TUMOR_peak_19681	chr11	69469616	69469727	+	5.18186	NA	TTS (NM_053056)	TTS (NM_053056)	13798	NM_053056	595	Hs.523852	NM_053056	HPRD:01346	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
19-PTNLD28-TUMOR_peak_90840	chr7	1553496	1553598	+	5.18186	NA	Intergenic	L3|LINE|CR1	-9529	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_97601	chr8	22457182	22457291	+	5.17986	NA	exon (NM_173686, exon 1 of 7)	exon (NM_173686, exon 1 of 7)	122	NM_001013842	541565	Hs.743508	NM_173686	HPRD:18675	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_32441	chr15	20310102	20310244	+	5.17825	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-177824	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_49945	chr19	50817348	50817581	+	5.17632	NA	non-coding (NR_110912, exon 4 of 4)	non-coding (NR_110912, exon 4 of 4)	15170	NM_004977	3748	Hs.467146	NM_004977	HPRD:08886	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel, Shaw-related subfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_40025	chr17	7761880	7761968	+	5.17632	NA	promoter-TSS (NM_032356)	promoter-TSS (NM_032356)	-752	NM_032356	84316	Hs.565094	NM_032356	HPRD:17491	NAA38	LSMD1|PFAAP2	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding
19-PTNLD28-TUMOR_peak_9345	chr1	202522753	202522951	+	5.17523	NA	intron (NM_001197131, intron 1 of 6)	intron (NM_001197131, intron 1 of 6)	13610	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_101961	chr9	2229458	2229546	+	5.17523	NA	Intergenic	Intergenic	71046	NM_001289400	6595	Hs.298990	NM_003070	HPRD:02483	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19-PTNLD28-TUMOR_peak_91976	chr7	34396850	34396978	+	5.17523	NA	intron (NR_033665, intron 3 of 3)	intron (NR_033665, intron 3 of 3)	-300937	NM_001300934	387129	Hs.652373	NM_207172	HPRD:10547	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_37921	chr16	55487962	55488245	+	5.17523	NA	Intergenic	Intergenic	-24978	NM_004530	4313	Hs.513617	NM_004530	HPRD:00386	MMP2	CLG4|CLG4A|MMP-II|MONA|TBE-1	matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_60955	chr20	37037320	37037465	+	5.17523	NA	Intergenic	Intergenic	16586	NR_002910	26776	Hs.400876	NR_002910	ENSG00000235408	SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
19-PTNLD28-TUMOR_peak_48081	chr19	18654840	18654959	+	5.17523	NA	promoter-TSS (NM_012181)	promoter-TSS (NM_012181)	-516	NM_012181	23770	Hs.173464	NM_012181	HPRD:05327	FKBP8	FKBP38|FKBPr38	FK506 binding protein 8, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_46014	chr18	57455279	57455404	+	5.17523	NA	Intergenic	Intergenic	-90697	NM_133459	147372	Hs.34333	NM_133459	HPRD:08703	CCBE1	-	collagen and calcium binding EGF domains 1	protein-coding
19-PTNLD28-TUMOR_peak_32867	chr15	31560468	31560558	+	5.17523	NA	Intergenic	Intergenic	-37463	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
19-PTNLD28-TUMOR_peak_10054	chr1	215740648	215740782	+	5.17523	NA	promoter-TSS (NM_016121)	promoter-TSS (NM_016121)	-20	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_8185	chr1	171935127	171935253	+	5.17523	NA	intron (NM_001136127, intron 2 of 19)	MER21C|LTR|ERVL	124572	NM_001136127	26052	Hs.654775	NM_015569	HPRD:13241	DNM3	Dyna III	dynamin 3	protein-coding
19-PTNLD28-TUMOR_peak_88099	chr6	56111543	56111761	+	5.17523	NA	intron (NM_030820, intron 1 of 29)	MER5B|DNA|hAT-Charlie	726	NM_030820	81578	Hs.47629	NM_030820	HPRD:09884	COL21A1	COLA1L|dJ682J15.1|dJ708F5.1	collagen, type XXI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_67745	chr3	42857367	42857455	+	5.17523	NA	intron (NM_001296, intron 1 of 2)	MIR|SINE|MIR	6447	NM_001296	1238	Hs.146346	NM_001296	HPRD:09095	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_62169	chr20	54754268	54754356	+	5.17523	NA	Intergenic	Intergenic	-69476	NM_019888	4159	Hs.248018	NM_019888	HPRD:01115	MC3R	BMIQ9|MC3|MC3-R|OB20|OQTL	melanocortin 3 receptor	protein-coding
19-PTNLD28-TUMOR_peak_40896	chr17	28671685	28671773	+	5.17523	NA	Intergenic	Intergenic	-10664	NM_206832	388364	Hs.371005	NM_206832	HPRD:18274	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_25309	chr12	72353038	72353126	+	5.17523	NA	intron (NM_173353, intron 5 of 10)	intron (NM_173353, intron 5 of 10)	20456	NM_173353	121278	Hs.736576	NM_173353	HPRD:09594	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding
19-PTNLD28-TUMOR_peak_56125	chr2	144017089	144017180	+	5.17523	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	130235	NM_018460	55843	Hs.171011	NM_018460	HPRD:06447	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
19-PTNLD28-TUMOR_peak_50664	chr1_gl000192_random	217850	218017	+	5.17523	NA	intron (NR_103556, intron 22 of 45)	AluJr|SINE|Alu	189577	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_36660	chr16	19847606	19847755	+	5.17523	NA	intron (NM_153208, intron 9 of 9)	intron (NM_153208, intron 9 of 9)	48471	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_2337	chr1	35586267	35586676	+	5.17523	NA	Intergenic	CpG	41507	NM_001289090	79830	Hs.471243	NM_024772	HPRD:15739	ZMYM1	MYM	zinc finger, MYM-type 1	protein-coding
19-PTNLD28-TUMOR_peak_68008	chr3	48054910	48054998	+	5.17523	NA	intron (NM_002375, intron 1 of 18)	MIR3|SINE|MIR	75815	NM_030885	4134	Hs.517949	NM_002375	HPRD:01141	MAP4	-	microtubule-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_77293	chr4	141649336	141649444	+	5.17523	NA	intron (NM_015130, intron 1 of 20)	intron (NM_015130, intron 1 of 20)	28081	NM_015130	23158	Hs.480819	NM_015130	HPRD:11115	TBC1D9	MDR1	TBC1 domain family, member 9 (with GRAM domain)	protein-coding
19-PTNLD28-TUMOR_peak_43	chr1	584360	584457	+	5.17523	NA	Intergenic	L3|LINE|CR1	-16615	NR_106781	102465432		NR_106781		MIR6723	hsa-mir-6723	microRNA 6723	ncRNA
19-PTNLD28-TUMOR_peak_89909	chr6	149190914	149191046	+	5.17523	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	94840	NR_038408	100128176	Hs.557541	NR_038408		LOC100128176	-	uncharacterized LOC100128176	ncRNA
19-PTNLD28-TUMOR_peak_32926	chr15	32796742	32796913	+	5.17376	NA	Intergenic	Intergenic	29115	NR_036650	100288615	Hs.562620	NR_036650		WHAMMP1	WHDC1P1	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_52665	chr2	47584724	47584907	+	5.17376	NA	Intergenic	Intergenic	-11472	NM_002354	4072	Hs.542050	NM_002354	HPRD:01709	EPCAM	DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_50745	chr2	650534	650624	+	5.17376	NA	Intergenic	Intergenic	26860	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_65746	chr22	42915832	42916057	+	5.17376	NA	promoter-TSS (NM_015703)	promoter-TSS (NM_015703)	-115	NM_015703	27341	Hs.745006	NM_015703		RRP7A	BK126B4.3|CGI-96	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_66634	chr3	11796726	11797028	+	5.17376	NA	Intergenic	Intergenic	-34635	NM_014667	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_64063	chr21	46947353	46947760	+	5.17376	NA	intron (NM_001205206, intron 4 of 5)	intron (NM_001205206, intron 4 of 5)	6986	NM_001205207	6573	Hs.84190	NM_003056	HPRD:02691	SLC19A1	CHMD|FOLT|IFC1|REFC|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_102957	chr9	36818645	36818777	+	5.17376	NA	Intergenic	Intergenic	4885	NR_039686	100616289		NR_039686	miRBase:MI0016827	MIR4475	-	microRNA 4475	ncRNA
19-PTNLD28-TUMOR_peak_69321	chr3	93710276	93710426	+	5.17376	NA	intron (NM_144996, intron 1 of 7)	AluJr|SINE|Alu	11368	NR_033427	200894	Hs.533086	NM_144996	HPRD:12334	ARL13B	ARL2L1|JBTS8	ADP-ribosylation factor-like 13B	protein-coding
19-PTNLD28-TUMOR_peak_40562	chr17	19388473	19388586	+	5.17376	NA	Intergenic	HERV16-int|LTR|ERVL	-48638	NM_018242	55244	Hs.232054	NM_018242	HPRD:07703	SLC47A1	MATE1	solute carrier family 47 (multidrug and toxin extrusion), member 1	protein-coding
19-PTNLD28-TUMOR_peak_93112	chr7	72141245	72141549	+	5.17376	NA	intron (NM_001145440, intron 12 of 14)	intron (NM_001145440, intron 12 of 14)	-21477	NR_039794	100616331		NR_039794	miRBase:MI0017278	MIR4650-2	-	microRNA 4650-2	ncRNA
19-PTNLD28-TUMOR_peak_21929	chr11	126010963	126011062	+	5.17376	NA	Intergenic	Intergenic	70575	NM_032795	84881	Hs.150458	NM_032795	HPRD:07862	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_36302	chr16	11504848	11504936	+	5.17376	NA	Intergenic	Intergenic	-54224	NR_110907	101927131	Hs.569654	NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
19-PTNLD28-TUMOR_peak_54831	chr2	110628875	110628988	+	5.17376	NA	Intergenic	Intergenic	-27078	NR_027467	96626	Hs.535619	NM_033514	HPRD:17277	LIMS3	PINCH-3	LIM and senescent cell antigen-like domains 3	protein-coding
19-PTNLD28-TUMOR_peak_9529	chr1	204412530	204412721	+	5.16920	NA	exon (NM_002646, exon 20 of 34)	exon (NM_002646, exon 20 of 34)	-31680	NM_032833	84919	Hs.304376	NM_032833	HPRD:17892	PPP1R15B	CREP	protein phosphatase 1, regulatory subunit 15B	protein-coding
19-PTNLD28-TUMOR_peak_46423	chr18	77512769	77513030	+	5.16823	NA	intron (NM_048368, intron 11 of 11)	intron (NM_048368, intron 11 of 11)	71469	NM_001202504	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_13731	chr10	60198189	60198295	+	5.16812	NA	Intergenic	Intergenic	53339	NM_001270782	7019	Hs.594250	NM_003201	HPRD:02702	TFAM	MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_37424	chr16	32699469	32699557	+	5.16796	NA	Intergenic	Intergenic	-12063	NR_110910	24150	Hs.592038	NM_015369		TP53TG3	P53TG3|TP53TG3A	TP53 target 3	protein-coding
19-PTNLD28-TUMOR_peak_3105	chr1	45082934	45083027	+	5.16796	NA	intron (NM_018150, intron 3 of 14)	CpG	57300	NM_024587	79639	Hs.22157	NM_024587	HPRD:07989	TMEM53	NET4	transmembrane protein 53	protein-coding
19-PTNLD28-TUMOR_peak_17436	chr11	16957639	16957765	+	5.16681	NA	intron (NM_175058, intron 3 of 22)	AluSx3|SINE|Alu	78261	NM_175058	144100	Hs.12332	NM_175058	HPRD:15142	PLEKHA7	-	pleckstrin homology domain containing, family A member 7	protein-coding
19-PTNLD28-TUMOR_peak_65354	chr22	36906595	36906685	+	5.16681	NA	TTS (NM_003753)	TTS (NM_003753)	-3492	NM_001102371	80020	Hs.387601	NM_024955	HPRD:08666	FOXRED2	ERFAD	FAD-dependent oxidoreductase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_109526	chrX	133803913	133804025	+	5.16681	NA	Intergenic	Intergenic	-11456	NM_021796	10761	Hs.496811	NM_021796	HPRD:02245	PLAC1	CT92|OOSP2L	placenta-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_59584	chr20	3847150	3847289	+	5.16681	NA	non-coding (NR_037921, exon 6 of 6)	non-coding (NR_037921, exon 6 of 6)	19773	NM_020746	57506	Hs.570362	NM_020746		MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
19-PTNLD28-TUMOR_peak_38028	chr16	57318706	57318856	+	5.16681	NA	promoter-TSS (NM_015993)	promoter-TSS (NM_015993)	-197	NM_015993	51090	Hs.632215	NM_015993	HPRD:11854	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
19-PTNLD28-TUMOR_peak_32880	chr15	31645593	31645763	+	5.16583	NA	intron (NM_015995, intron 1 of 1)	intron (NM_015995, intron 1 of 1)	26595	NM_015995	51621	Hs.525752	NM_015995	HPRD:05620	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
19-PTNLD28-TUMOR_peak_100011	chr8	107221168	107221275	+	5.16583	NA	Intergenic	Intergenic	-61185	NM_018002	55074	Hs.127286	NM_018002	HPRD:16126	OXR1	TLDC3	oxidation resistance 1	protein-coding
19-PTNLD28-TUMOR_peak_28665	chr13	92000962	92001140	+	5.16583	NA	intron (NR_027349, intron 1 of 3)	CpG	977	NR_027349	407975	Hs.24115	NR_027349	HPRD:12617	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92 cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_94382	chr7	100744307	100744395	+	5.16394	NA	Intergenic	AluSx1|SINE|Alu	15565	NM_030961	81844	Hs.521092	NM_030961	HPRD:10284	TRIM56	RNF109	tripartite motif containing 56	protein-coding
19-PTNLD28-TUMOR_peak_2191	chr1	33438807	33439026	+	5.16394	NA	Intergenic	CpG	-8502	NM_001127361	127544	Hs.591504	NM_153341	HPRD:13725	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
19-PTNLD28-TUMOR_peak_87088	chr6	36354269	36354382	+	5.16381	NA	intron (NM_001207038, intron 1 of 6)	intron (NM_001207038, intron 1 of 6)	1243	NM_001207038	51513	Hs.272398	NM_016135	HPRD:16095	ETV7	TEL-2|TEL2|TELB	ets variant 7	protein-coding
19-PTNLD28-TUMOR_peak_41255	chr17	36858570	36858760	+	5.16381	NA	promoter-TSS (NR_039887)	promoter-TSS (NR_039887)	-81	NR_039887	100616203		NR_039887	miRBase:MI0017371	MIR4734	-	microRNA 4734	ncRNA
19-PTNLD28-TUMOR_peak_84924	chr6	3751151	3751269	+	5.16000	NA	intron (NM_183373, intron 1 of 4)	CpG	1036	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_86644	chr6	31693823	31693923	+	5.15598	NA	TTS (NM_013974)	TTS (NM_013974)	2752	NM_138273	80739	Hs.247879	NM_025260	HPRD:09405	C6orf25	G6b|NG31	chromosome 6 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_86594	chr6	31324026	31324180	+	5.15450	NA	exon (NM_005514, exon 3 of 8).3	exon (NM_005514, exon 3 of 8).3	886	NM_005514	3106	Hs.77961	NM_005514	HPRD:00828	HLA-B	AS|HLAB|SPDA1	major histocompatibility complex, class I, B	protein-coding
19-PTNLD28-TUMOR_peak_46347	chr18	74844071	74844296	+	5.15450	NA	intron (NM_001025101, intron 1 of 8)	CpG	591	NM_001025100	4155	Hs.551713	NM_002385	HPRD:01158	MBP	-	myelin basic protein	protein-coding
19-PTNLD28-TUMOR_peak_66876	chr3	15144433	15144555	+	5.15206	NA	Intergenic	Intergenic	-3839	NM_022340	64145	Hs.475565	NM_022340	HPRD:15732	ZFYVE20	Rabenosyn-5	zinc finger, FYVE domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_74011	chr4	3725104	3725383	+	5.15161	NA	Intergenic	Intergenic	-43053	NM_000683	152	Hs.123022	NM_000683	HPRD:00085	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
19-PTNLD28-TUMOR_peak_64039	chr21	46742813	46742908	+	5.15047	NA	Intergenic	Intergenic	19045	NR_103811	388830	Hs.592162	NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
19-PTNLD28-TUMOR_peak_87412	chr6	41389487	41389593	+	5.15047	NA	Intergenic	L2c|LINE|L2	-80642	NR_120347	103106903	Hs.563396	NR_120347		LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19-PTNLD28-TUMOR_peak_97629	chr8	22638756	22639036	+	5.15047	NA	intron (NM_144962, intron 4 of 6)	intron (NM_144962, intron 4 of 6)	-88081	NM_004430	1960	Hs.534313	NM_004430	HPRD:03881	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
19-PTNLD28-TUMOR_peak_78058	chr4	174089265	174089358	+	5.15047	NA	promoter-TSS (NM_017423)	promoter-TSS (NM_017423)	-593	NM_017423	51809	Hs.548088	NM_017423	HPRD:10386	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
19-PTNLD28-TUMOR_peak_24755	chr12	57518124	57518278	+	5.15047	NA	Intergenic	Intergenic	-4081	NM_002332	4035	Hs.162757	NM_002332	HPRD:00138	LRP1	A2MR|APOER|APR|CD91|IGFBP3R|LRP|LRP1A|TGFBR5	low density lipoprotein receptor-related protein 1	protein-coding
19-PTNLD28-TUMOR_peak_3706	chr1	55680655	55680877	+	5.15047	NA	promoter-TSS (NR_038320)	promoter-TSS (NR_038320)	273	NM_015306	23358	Hs.477009	NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
19-PTNLD28-TUMOR_peak_101194	chr8	135168690	135168865	+	5.15047	NA	Intergenic	Intergenic	270038	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_100666	chr8	126341153	126341342	+	5.15047	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	-101316	NM_025195	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_102531	chr9	26260236	26260486	+	5.15047	NA	Intergenic	MIRb|SINE|MIR	193688	NM_001004352	100506422	Hs.533221	NM_001004352		LOC100506422	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	protein-coding
19-PTNLD28-TUMOR_peak_32384	chr14	106146599	106146911	+	5.15047	NA	Intergenic	CpG	-7611	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_16863	chr11	6374708	6374889	+	5.15047	NA	Intergenic	Intergenic	-33058	NM_145040	112464	Hs.434044	NM_145040	HPRD:17908	PRKCDBP	CAVIN3|HSRBC|SRBC|cavin-3	protein kinase C, delta binding protein	protein-coding
19-PTNLD28-TUMOR_peak_51854	chr2	28906244	28906480	+	5.14571	NA	Intergenic	Intergenic	-68252	NM_206876	5500	Hs.702907	NM_002709	HPRD:11792	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1, catalytic subunit, beta isozyme	protein-coding
19-PTNLD28-TUMOR_peak_37085	chr16	28985389	28985551	+	5.14571	NA	promoter-TSS (NM_001142448)	promoter-TSS (NM_001142448)	-626	NM_001142449	83985	Hs.617449	NM_032038	HPRD:11599	SPNS1	HSpin1|LAT|PP2030|SPIN1|SPINL|nrs	spinster homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_10039	chr1	214724911	214725125	+	5.14571	NA	promoter-TSS (NM_005401)	promoter-TSS (NM_005401)	6	NM_005401	5784	Hs.193557	NM_005401	HPRD:04402	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
19-PTNLD28-TUMOR_peak_96107	chr7	144088950	144089078	+	5.14571	NA	Intergenic	Intergenic	18306	NM_001080413	135935	Hs.558628	NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
19-PTNLD28-TUMOR_peak_109235	chrX	115009729	115009817	+	5.14571	NA	Intergenic	Intergenic	181954	NM_001282338	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_38223	chr16	66440902	66441014	+	5.14571	NA	Intergenic	CpG	-1469	NR_046242	100505865	Hs.314372	NR_046242		LINC00920	-	long intergenic non-protein coding RNA 920	ncRNA
19-PTNLD28-TUMOR_peak_44832	chr18	20046585	20046739	+	5.14571	NA	Intergenic	L2b|LINE|L2	-48784	NM_172241	64693	Hs.406709	NM_022663	HPRD:16395	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_36912	chr16	24551214	24551469	+	5.14544	NA	5' UTR (NM_006910, exon 1 of 18)	5' UTR (NM_006910, exon 1 of 18)	433	NM_032626	5930	Hs.188553	NM_006910	HPRD:02964	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	retinoblastoma binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_108784	chrX	75364890	75365154	+	5.14544	NA	Intergenic	CpG	-27742	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_74889	chr4	30719244	30719361	+	5.14544	NA	Intergenic	CpG	-2728	NM_032456	5099	Hs.479439	NM_002589	HPRD:04288	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
19-PTNLD28-TUMOR_peak_11616	chr10	735458	735616	+	5.14544	NA	promoter-TSS (NM_014974)	promoter-TSS (NM_014974)	71	NM_014974	22982	Hs.432397	NM_014974	HPRD:17200	DIP2C	KIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_65481	chr22	38598531	38598961	+	5.14544	NA	promoter-TSS (NM_001161573)	promoter-TSS (NM_001161573)	-281	NM_001161573	23764	Hs.517617	NM_012323	HPRD:05343	MAFF	U-MAF|hMafF	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F	protein-coding
19-PTNLD28-TUMOR_peak_14596	chr10	81905371	81905577	+	5.14536	NA	TTS (NM_001012973)	TTS (NM_001012973)	13216	NM_001012973	219348	Hs.204947	NM_001012973		PLAC9	-	placenta-specific 9	protein-coding
19-PTNLD28-TUMOR_peak_94126	chr7	97736478	97736566	+	5.14536	NA	exon (NM_014916, exon 1 of 14)	exon (NM_014916, exon 1 of 14)	325	NM_014916	22853	Hs.444179	NM_014916	HPRD:13994	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk	lemur tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_79917	chr5	54528491	54528592	+	5.14536	NA	non-coding (NR_125348, exon 1 of 2)	non-coding (NR_125348, exon 1 of 2)	278	NR_125348	10309	Hs.3041	NM_021147	HPRD:06375	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
19-PTNLD28-TUMOR_peak_63829	chr21	44582114	44582247	+	5.14536	NA	Intergenic	Intergenic	-6938	NM_000394	1409	Hs.184085	NM_000394	HPRD:00427	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin, alpha A	protein-coding
19-PTNLD28-TUMOR_peak_20008	chr11	74205416	74205563	+	5.14536	NA	promoter-TSS (NM_001144869)	promoter-TSS (NM_001144869)	-734	NM_001144869	387787	Hs.591971	NM_001144869	ENSG00000175536	LIPT2	-	lipoyl(octanoyl) transferase 2 (putative)	protein-coding
19-PTNLD28-TUMOR_peak_35569	chr15	102501326	102501428	+	5.14521	NA	non-coding (NR_003659, exon 1 of 11)	non-coding (NR_003659, exon 1 of 11)	361	NR_003659	374666	Hs.459573	NM_199163		WASH3P	FAM39DP	WAS protein family homolog 3 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29376	chr14	21536734	21536835	+	5.14283	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-1635	NM_018071	55701	Hs.35125	NM_018071	HPRD:13335	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding
19-PTNLD28-TUMOR_peak_49412	chr19	46087219	46087346	+	5.14283	NA	intron (NM_025136, intron 1 of 1)	intron (NM_025136, intron 1 of 1)	840	NM_001017989	80207	Hs.466945	NM_025136	HPRD:05956	OPA3	MGA3	optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	protein-coding
19-PTNLD28-TUMOR_peak_47867	chr19	17190937	17191063	+	5.14283	NA	intron (NM_001130065, intron 1 of 39)	intron (NM_001130065, intron 1 of 39)	4409	NM_004145	4650	Hs.123198	NM_004145	HPRD:03677	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
19-PTNLD28-TUMOR_peak_66082	chr22	50354213	50354334	+	5.14283	NA	5' UTR (NM_001001852, exon 1 of 6)	5' UTR (NM_001001852, exon 1 of 6)	130	NM_001001852	415116	Hs.530381	NM_001001852	HPRD:15137	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
19-PTNLD28-TUMOR_peak_17823	chr11	31892689	31892846	+	5.14096	NA	intron (NR_033971, intron 1 of 2)	intron (NR_033971, intron 1 of 2)	44653	NR_117094	103157000		NR_117094		PAUPAR	-	PAX6 upstream antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_6388	chr1	146361827	146361922	+	5.14096	NA	intron (NR_104217, intron 2 of 17).2	MLT1H1|LTR|ERVL-MaLR	-11983	NM_001278141	149013	Hs.666981	NM_001278141	ENSG00000186275	NBPF12	COAS1|KIAA1245	neuroblastoma breakpoint family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_65680	chr22	41798095	41798298	+	5.14096	NA	Intergenic	Intergenic	20263	NM_003216	7008	Hs.181159	NM_003216	HPRD:01783	TEF	-	thyrotrophic embryonic factor	protein-coding
19-PTNLD28-TUMOR_peak_2839	chr1	41908573	41908779	+	5.14096	NA	Intergenic	Intergenic	41668	NM_001956	1907	Hs.1407	NM_001956	HPRD:07173	EDN2	ET2|PPET2	endothelin 2	protein-coding
19-PTNLD28-TUMOR_peak_20181	chr11	76750664	76750972	+	5.14096	NA	exon (NM_138706, exon 2 of 4)	exon (NM_138706, exon 2 of 4)	5433	NM_138706	192134	Hs.352622	NM_138706	HPRD:16534	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding
19-PTNLD28-TUMOR_peak_59425	chr20	1247184	1247549	+	5.14096	NA	5' UTR (NM_014723, exon 2 of 6)	5' UTR (NM_014723, exon 2 of 6)	406	NM_014723	9751	Hs.323833	NM_014723	HPRD:16081	SNPH	bA314N13.5	syntaphilin	protein-coding
19-PTNLD28-TUMOR_peak_72347	chr3	171698418	171698536	+	5.14096	NA	Intergenic	Intergenic	-58941	NM_022763	64778	Hs.744888	NM_022763	HPRD:10943	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_35530	chr15	101792505	101792637	+	5.14096	NA	promoter-TSS (NM_014918)	promoter-TSS (NM_014918)	-434	NM_014918	22856	Hs.110488	NM_014918	HPRD:10493	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_104572	chr9	94491741	94491829	+	5.14096	NA	intron (NM_004560, intron 7 of 8)	intron (NM_004560, intron 7 of 8)	-93158	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	ncRNA
19-PTNLD28-TUMOR_peak_62531	chr20	61436183	61436374	+	5.14096	NA	exon (NM_007346, exon 1 of 7)	exon (NM_007346, exon 1 of 7)	101	NM_007346	11054	Hs.67896	NM_007346	HPRD:08404	OGFR	-	opioid growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_58020	chr2	206839178	206839322	+	5.14096	NA	Intergenic	AluY|SINE|Alu	111656	NM_017759	54891	Hs.445036	NM_017759	HPRD:07894	INO80D	-	INO80 complex subunit D	protein-coding
19-PTNLD28-TUMOR_peak_27425	chr13	22400358	22400562	+	5.14096	NA	Intergenic	Intergenic	51839	NR_047040	100874182	Hs.148951	NR_047040		LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
19-PTNLD28-TUMOR_peak_48072	chr19	18548452	18548758	+	5.13926	NA	promoter-TSS (NM_001253389)	promoter-TSS (NM_001253389)	367	NR_045574	51477	Hs.405873	NM_016368	HPRD:17163	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_9233	chr1	201471435	201471546	+	5.13880	NA	intron (NM_001193570, intron 1 of 5)	intron (NM_001193570, intron 1 of 5)	4477	NM_001193571	1465	Hs.108080	NM_004078	HPRD:00470	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141	cysteine and glycine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_91291	chr7	12130622	12130768	+	5.13854	NA	Intergenic	HERVL18-int|LTR|ERVL	-120153	NM_001134232	54664	Hs.396358	NM_018374		TMEM106B	-	transmembrane protein 106B	protein-coding
19-PTNLD28-TUMOR_peak_101238	chr8	135947933	135948160	+	5.13854	NA	Intergenic	Intergenic	85868	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
19-PTNLD28-TUMOR_peak_16988	chr11	8754343	8754568	+	5.13854	NA	intron (NM_213618, intron 2 of 19)	intron (NM_213618, intron 2 of 19)	-35870	NR_120590	102724784	Hs.613276	NR_120590		LOC102724784	-	uncharacterized LOC102724784	ncRNA
19-PTNLD28-TUMOR_peak_80749	chr5	74907251	74907430	+	5.13699	NA	promoter-TSS (NM_001276713)	promoter-TSS (NM_001276713)	39	NM_001276713	728780	Hs.370455	NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_4074	chr1	64598810	64599033	+	5.13699	NA	intron (NM_001083592, intron 4 of 6)	L2c|LINE|L2	-19447	NR_110665	101927034	Hs.680824	NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32895	chr15	31942597	31942757	+	5.13699	NA	intron (NM_130901, intron 1 of 10)	L1ME1|LINE|L1	4865	NM_130901	161725	Hs.355236	NM_130901	HPRD:12666	OTUD7A	C15orf16|C16ORF15|CEZANNE2|OTUD7	OTU deubiquitinase 7A	protein-coding
19-PTNLD28-TUMOR_peak_53516	chr2	74087026	74087159	+	5.13699	NA	intron (NM_201647, intron 8 of 9)	intron (NM_201647, intron 8 of 9)	30967	NM_213622	10617	Hs.469018	NM_006463	HPRD:05877	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
19-PTNLD28-TUMOR_peak_95710	chr7	138536357	138536560	+	5.13699	NA	intron (NM_001164665, intron 17 of 19)	L1MEg|LINE|L1	-53517	NM_130840	50617	Hs.98967	NM_020632	HPRD:05576	ATP6V0A4	A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase, H+ transporting, lysosomal V0 subunit a4	protein-coding
19-PTNLD28-TUMOR_peak_106231	chr9	130814348	130814436	+	5.13699	NA	Intergenic	Intergenic	15207	NM_197956	203245	Hs.373606	NM_197956	HPRD:12987	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
19-PTNLD28-TUMOR_peak_97085	chr8	9170679	9170775	+	5.13699	NA	Intergenic	AluJb|SINE|Alu	-11834	NR_040039	157273	Hs.650222	NR_040039	ENSG00000254235	LOC157273	-	uncharacterized LOC157273	ncRNA
19-PTNLD28-TUMOR_peak_18354	chr11	45837445	45837547	+	5.13699	NA	Intergenic	Intergenic	10855	NM_018389	55343	Hs.12211	NM_018389	HPRD:09324	SLC35C1	CDG2C|FUCT1	solute carrier family 35 (GDP-fucose transporter), member C1	protein-coding
19-PTNLD28-TUMOR_peak_52322	chr2	42080845	42080933	+	5.13699	NA	Intergenic	Intergenic	-23806	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LOC388942	-	uncharacterized LOC388942	ncRNA
19-PTNLD28-TUMOR_peak_33903	chr15	63281996	63282281	+	5.13699	NA	Intergenic	Intergenic	-52700	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_93048	chr7	69279580	69279888	+	5.13699	NA	intron (NM_001127231, intron 1 of 17)	intron (NM_001127231, intron 1 of 17)	215829	NM_001127231	26053	Hs.21631	NM_015570	HPRD:06276	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
19-PTNLD28-TUMOR_peak_26095	chr12	107975189	107975414	+	5.13699	NA	intron (NM_001018072, intron 4 of 16)	CpG-5725	667	NM_001017523	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_33912	chr15	63372283	63372375	+	5.13699	NA	Intergenic	Intergenic	31693	NM_001018008	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_84433	chr5	178156887	178156991	+	5.13695	NA	intron (NM_005649, intron 1 of 4)	AluY|SINE|Alu	764	NM_005649	6940	Hs.484324	NM_005649	HPRD:03900	ZNF354A	EZNF|HEL104|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
19-PTNLD28-TUMOR_peak_3368	chr1	48516033	48516189	+	5.13695	NA	Intergenic	Intergenic	-53549	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_42624	chr17	57183604	57183785	+	5.13695	NA	intron (NM_001005207, intron 1 of 24)	CpG	572	NM_015294	4591	Hs.579079	NM_015294	HPRD:05463	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
19-PTNLD28-TUMOR_peak_94321	chr7	100167634	100168000	+	5.13656	NA	Intergenic	CpG	3453	NM_001168682	100316904	Hs.633863	NM_001168682	ENSG00000205307	SAP25	-	Sin3A-associated protein, 25kDa	protein-coding
19-PTNLD28-TUMOR_peak_86650	chr6	31708054	31708206	+	5.12782	NA	intron (NM_002441, intron 1 of 24).2	CpG	405	NM_002441	4439	Hs.647011	NM_002441	HPRD:04544	MSH5	G7|MUTSH5|NG23	mutS homolog 5	protein-coding
19-PTNLD28-TUMOR_peak_47827	chr19	16581102	16581190	+	5.12720	NA	intron (NM_001258374, intron 1 of 23)	AluSz|SINE|Alu	1677	NM_001258374	58513	Hs.654639	NM_021235	HPRD:09445	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
19-PTNLD28-TUMOR_peak_36758	chr16	21843855	21844070	+	5.12720	NA	Intergenic	L2b|LINE|L2	-13467	NR_003370	730092	Hs.31290	NR_003370		RRN3P1	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_54108	chr2	91911638	91911726	+	5.12720	NA	Intergenic	Intergenic	-51686	NR_003503	645367	Hs.650223	NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_18667	chr11	57417381	57417476	+	5.12618	NA	promoter-TSS (NM_145008)	promoter-TSS (NM_145008)	-11	NM_145008	219539	Hs.135978	NM_145008	HPRD:08081	YPEL4	-	yippee-like 4 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_78217	chr4	184021001	184021154	+	5.12618	NA	promoter-TSS (NR_024008)	promoter-TSS (NR_024008)	614	NM_024949	80014	Hs.333179	NM_024949	HPRD:12529	WWC2	BOMB	WW and C2 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46505	chr19	680717	680936	+	5.12618	NA	intron (NM_005860, intron 3 of 4)	intron (NM_005860, intron 3 of 4)	4437	NM_005860	10272	Hs.529038	NM_005860	HPRD:05632	FSTL3	FLRG|FSRP	follistatin-like 3 (secreted glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_76928	chr4	124320514	124320738	+	5.12618	NA	promoter-TSS (NM_005841)	promoter-TSS (NM_005841)	-19	NM_005841	10252	Hs.744854	NM_005841	HPRD:06782	SPRY1	hSPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_33088	chr15	38544067	38544455	+	5.12598	NA	promoter-TSS (NM_152594)	promoter-TSS (NM_152594)	-791	NM_152594	161742	Hs.525781	NM_152594	HPRD:11601	SPRED1	NFLS|PPP1R147|hSpred1|spred-1	sprouty-related, EVH1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80602	chr5	72326479	72326679	+	5.12598	NA	intron (NM_001146032, intron 7 of 24)	MER5A|DNA|hAT-Charlie	74771	NM_001146032	115548	Hs.165762	NM_138782	HPRD:13319	FCHO2	-	FCH domain only 2	protein-coding
19-PTNLD28-TUMOR_peak_5392	chr1	110074995	110075138	+	5.12598	NA	Intergenic	Intergenic	-7428	NM_031936	83873	Hs.709782	NM_031936	HPRD:06077	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
19-PTNLD28-TUMOR_peak_7058	chr1	154326214	154326312	+	5.12580	NA	Intergenic	L2|LINE|L2	25987	NM_020452	57198	Hs.435700	NM_020452	HPRD:05794	ATP8B2	ATPID	ATPase, aminophospholipid transporter, class I, type 8B, member 2	protein-coding
19-PTNLD28-TUMOR_peak_77763	chr4	156386935	156387087	+	5.12580	NA	Intergenic	Intergenic	-88889	NM_001039580	79884	Hs.61271	NM_001039580	HPRD:07957	MAP9	ASAP	microtubule-associated protein 9	protein-coding
19-PTNLD28-TUMOR_peak_43861	chr17	78038141	78038232	+	5.12580	NA	intron (NM_017950, intron 9 of 19)	intron (NM_017950, intron 9 of 19)	27755	NM_017950	55036	Hs.202542	NM_017950	ENSG00000141519	CCDC40	CILD15|FAP172	coiled-coil domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_95448	chr7	132738497	132738609	+	5.12580	NA	intron (NM_017812, intron 2 of 7)	intron (NM_017812, intron 2 of 7)	28275	NM_017812	54927	Hs.655010	NM_017812	HPRD:13044	CHCHD3	MINOS3|PPP1R22	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_84594	chr5	180611233	180611430	+	5.12551	NA	Intergenic	Intergenic	7577	NR_108031	102577426	Hs.277359	NR_108031		LOC102577426	-	uncharacterized LOC102577426	ncRNA
19-PTNLD28-TUMOR_peak_64745	chr22	24576325	24576485	+	5.12408	NA	Intergenic	Intergenic	-1039	NM_019601	56241	Hs.131819	NM_019601	HPRD:18132	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_107980	chrX	39872351	39872487	+	5.12408	NA	Intergenic	CpG	84300	NM_017745	54880	Hs.659681	NM_017745	HPRD:06458	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
19-PTNLD28-TUMOR_peak_97230	chr8	12385784	12385970	+	5.12408	NA	intron (NR_040091, intron 5 of 6)	intron (NR_040091, intron 5 of 6)	91355	NR_040092	100506990	Hs.656893	NR_040091		LOC100506990	-	uncharacterized LOC100506990	ncRNA
19-PTNLD28-TUMOR_peak_78596	chr5	514314	514440	+	5.12122	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	10172	NM_004174	6550	Hs.658120	NM_004174	HPRD:01660	SLC9A3	NHE3	solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3	protein-coding
19-PTNLD28-TUMOR_peak_102082	chr9	5627206	5627535	+	5.12122	NA	Intergenic	Intergenic	-1749	NM_001135920	57589	Hs.211520	NM_020829	HPRD:13858	RIC1	CIP150|KIAA1432|bA207C16.1	RAB6A GEF complex partner 1	protein-coding
19-PTNLD28-TUMOR_peak_63691	chr21	43132006	43132128	+	5.12122	NA	non-coding (NR_027272, exon 6 of 6)	non-coding (NR_027272, exon 6 of 6)	3868	NR_027272	150135	Hs.350679	NM_152506	HPRD:10741	LINC00479	C21orf129	long intergenic non-protein coding RNA 479	ncRNA
19-PTNLD28-TUMOR_peak_3018	chr1	44014121	44014252	+	5.11686	NA	intron (NM_130440, intron 3 of 32)	MIRb|SINE|MIR	17639	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_107007	chrUn_gl000214	125838	125958	+	5.11664	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_21386	chr11	116578281	116578501	+	5.11041	NA	Intergenic	CpG	65323	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_13168	chr10	43428941	43429062	+	5.11041	NA	Intergenic	CpG	-64010	NR_049836	100847014		NR_049836	miRBase:MI0019116	MIR5100	-	microRNA 5100	ncRNA
19-PTNLD28-TUMOR_peak_3605	chr1	54375733	54375892	+	5.11041	NA	3' UTR (NM_000792, exon 4 of 4)	3' UTR (NM_000792, exon 4 of 4)	15951	NM_213593	1733	Hs.251415	NM_000792	HPRD:01002	DIO1	5DI|TXDI1	deiodinase, iodothyronine, type I	protein-coding
19-PTNLD28-TUMOR_peak_48221	chr19	21542142	21542230	+	5.11041	NA	intron (NR_027130, intron 1 of 4)	intron (NR_027130, intron 1 of 4)	451	NR_027130	148203	Hs.124384	NR_027130		ZNF738	-	zinc finger protein 738	pseudo
19-PTNLD28-TUMOR_peak_20201	chr11	77185308	77185460	+	5.11041	NA	promoter-TSS (NM_001128620)	promoter-TSS (NM_001128620)	-276	NM_001128620	5058	Hs.435714	NM_002576	HPRD:03995	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_51833	chr2	28761986	28762148	+	5.11041	NA	intron (NM_001170585, intron 11 of 56)	intron (NM_001170585, intron 11 of 56)	43129	NM_153021	151056	Hs.444933	NM_153021	HPRD:15141	PLB1	PLB|PLB/LIP|hPLB	phospholipase B1	protein-coding
19-PTNLD28-TUMOR_peak_60450	chr20	30448252	30448375	+	5.11041	NA	TTS (NM_080611)	TTS (NM_080611)	9488	NM_001012644	128853	Hs.585017	NM_080611	HPRD:13252	DUSP15	VHY	dual specificity phosphatase 15	protein-coding
19-PTNLD28-TUMOR_peak_8757	chr1	183387428	183387577	+	5.11041	NA	5' UTR (NM_015039, exon 1 of 11)	5' UTR (NM_015039, exon 1 of 11)	132	NM_015039	23057	Hs.497123	NM_015039	HPRD:09786	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_55688	chr2	130940104	130940525	+	5.10897	NA	promoter-TSS (NM_001171083)	promoter-TSS (NM_001171083)	9	NR_033230	55627	Hs.516450	NM_017751	HPRD:13374	SMPD4	NET13|NSMASE-3|NSMASE3	sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)	protein-coding
19-PTNLD28-TUMOR_peak_100487	chr8	123811069	123811236	+	5.10878	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	17251	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_42750	chr17	60215520	60215789	+	5.10878	NA	Intergenic	CpG	-73011	NM_005121	9969	Hs.282678	NM_005121	HPRD:07229	MED13	ARC250|DRIP250|HSPC221|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
19-PTNLD28-TUMOR_peak_26898	chr12	123600251	123600474	+	5.10878	NA	Intergenic	Intergenic	-5326	NM_001300801	57605	Hs.272759	NM_020845	HPRD:08335	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding
19-PTNLD28-TUMOR_peak_15460	chr10	105726793	105727007	+	5.10878	NA	promoter-TSS (NM_014720)	promoter-TSS (NM_014720)	-570	NM_014720	9748	Hs.591922	NM_014720	HPRD:11585	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20-like kinase	protein-coding
19-PTNLD28-TUMOR_peak_81882	chr5	124746653	124746766	+	5.10749	NA	Intergenic	Intergenic	-82245	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
19-PTNLD28-TUMOR_peak_29277	chr14	19934392	19934514	+	5.10253	NA	Intergenic	Intergenic	-9119	NR_110526	503639	Hs.659013	NM_001013701		DUXAP10	-	double homeobox A pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_62899	chr21	19192303	19192484	+	5.10199	NA	promoter-TSS (NM_017447)	promoter-TSS (NM_017447)	-690	NM_001100421	54149	Hs.293811	NM_017447	HPRD:10776	C21orf91	C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_51746	chr2	27603403	27603792	+	5.10199	NA	promoter-TSS (NM_144631)	promoter-TSS (NM_144631)	14	NM_144631	130557	Hs.515872	NM_144631	HPRD:15813	ZNF513	HMFT0656|RP58	zinc finger protein 513	protein-coding
19-PTNLD28-TUMOR_peak_19472	chr11	67114066	67114243	+	5.10199	NA	intron (NR_024469, intron 2 of 3)	L2|LINE|L2	6913	NM_001256870	57804	Hs.523829	NM_021173		POLD4	POLDS|p12	polymerase (DNA-directed), delta 4, accessory subunit	protein-coding
19-PTNLD28-TUMOR_peak_23388	chr12	22696615	22696782	+	5.10199	NA	intron (NM_001286174, intron 1 of 25)	intron (NM_001286174, intron 1 of 25)	782	NM_001286175	9847	Hs.271014	NM_014802	HPRD:11087	C2CD5	CDP138|KIAA0528	C2 calcium-dependent domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_33799	chr15	59982115	59982250	+	5.10199	NA	promoter-TSS (NM_004330)	promoter-TSS (NM_004330)	-540	NM_004330	663	Hs.592515	NM_004330	HPRD:04481	BNIP2	BNIP-2|NIP2	BCL2/adenovirus E1B 19kDa interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_108597	chrX	67653538	67653842	+	5.10150	NA	promoter-TSS (NM_002547)	promoter-TSS (NM_002547)	-391	NM_002547	4983	Hs.128824	NM_002547	HPRD:02130	OPHN1	ARHGAP41|MRX60|OPN1	oligophrenin 1	protein-coding
19-PTNLD28-TUMOR_peak_67512	chr3	36949652	36949746	+	5.10150	NA	intron (NM_014831, intron 1 of 22)	intron (NM_014831, intron 1 of 22)	36849	NM_014831	9881	Hs.170999	NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
19-PTNLD28-TUMOR_peak_108657	chrX	69655231	69655373	+	5.10150	NA	Intergenic	Intergenic	-9403	NM_021120	1741	Hs.721586	NM_020730	HPRD:02177	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR	discs, large homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_82231	chr5	133771350	133771475	+	5.09980	NA	promoter-TSS (NR_105044)	promoter-TSS (NR_105044)	-674	NR_105044	102546229		NR_105044		LOC102546229	-	uncharacterized LOC102546229	ncRNA
19-PTNLD28-TUMOR_peak_67351	chr3	30620174	30620521	+	5.09877	NA	Intergenic	MER72B|LTR|ERV1	-27647	NM_001024847	7048	Hs.82028	NM_003242	HPRD:01823	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII	transforming growth factor, beta receptor II (70/80kDa)	protein-coding
19-PTNLD28-TUMOR_peak_47687	chr19	15051754	15051911	+	5.09877	NA	promoter-TSS (NM_012377)	promoter-TSS (NM_012377)	-469	NM_012377	26658	Hs.589620	NM_012377	HPRD:15072	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	olfactory receptor, family 7, subfamily C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_97027	chr8	8128021	8128236	+	5.09877	NA	Intergenic	Intergenic	42036	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_61172	chr20	41889184	41889363	+	5.09877	NA	Intergenic	Intergenic	-70716	NM_133170	11122	Hs.526879	NM_007050	HPRD:06690	PTPRT	RPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding
19-PTNLD28-TUMOR_peak_59792	chr20	10641394	10641492	+	5.09877	NA	intron (NM_000214, intron 3 of 25)	intron (NM_000214, intron 3 of 25)	-11100	NR_106930	102465525		NR_106930		MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
19-PTNLD28-TUMOR_peak_92522	chr7	50343564	50343652	+	5.09877	NA	promoter-TSS (NM_006060)	promoter-TSS (NM_006060)	-71	NM_001291839	10320	Hs.435949	NM_006060	HPRD:04318	IKZF1	Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1 (Ikaros)	protein-coding
19-PTNLD28-TUMOR_peak_12831	chr10	32545695	32545800	+	5.09877	NA	Intergenic	Intergenic	90229	NM_001272019	80314	Hs.167805	NM_025209	HPRD:09941	EPC1	Epl1	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_88673	chr6	88504859	88504947	+	5.09877	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	10325	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
19-PTNLD28-TUMOR_peak_39845	chr17	4829831	4829970	+	5.09877	NA	Intergenic	Intergenic	-5692	NM_000173	2811	Hs.1472	NM_000173	HPRD:01976	GP1BA	BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|VWDP	glycoprotein Ib (platelet), alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_20608	chr11	93583608	93583753	+	5.09877	NA	promoter-TSS (NM_001144871)	promoter-TSS (NM_001144871)	-12	NM_001144871	387804	Hs.512252	NM_001144871		VSTM5	C11orf90	V-set and transmembrane domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_73736	chr4	526712	526800	+	5.09877	NA	intron (NM_001289052, intron 9 of 10)	intron (NM_001289052, intron 9 of 10)	33767	NR_110293	54872	Hs.7099	NM_017733	HPRD:07890	PIGG	GPI7|LAS21|PRO4405|RLGS1930	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding
19-PTNLD28-TUMOR_peak_70006	chr3	118510229	118510317	+	5.09877	NA	Intergenic	Intergenic	-151650	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_33784	chr15	59730135	59730223	+	5.09877	NA	promoter-TSS (NM_152450)	promoter-TSS (NM_152450)	-193	NM_152450	145773	Hs.531168	NM_152450	HPRD:14508	FAM81A	-	family with sequence similarity 81, member A	protein-coding
19-PTNLD28-TUMOR_peak_92459	chr7	47717297	47717471	+	5.09877	NA	Intergenic	MSTB2-int|LTR|ERVL-MaLR	22542	NM_001123065	401335	Hs.520816	NM_001123065	ENSG00000221845	C7orf65	-	chromosome 7 open reading frame 65	protein-coding
19-PTNLD28-TUMOR_peak_26426	chr12	113710031	113710133	+	5.09877	NA	intron (NM_017901, intron 7 of 27)	intron (NM_017901, intron 7 of 27)	-19246	NR_106820	102465457		NR_106820		MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
19-PTNLD28-TUMOR_peak_77415	chr4	145869135	145869256	+	5.09877	NA	Intergenic	Intergenic	-149961	NM_002940	6059	Hs.12013	NM_002940	HPRD:03132	ABCE1	ABC38|OABP|RLI|RNASEL1|RNASELI|RNS4I	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding
19-PTNLD28-TUMOR_peak_29739	chr14	32176189	32176426	+	5.09877	NA	intron (NR_120408, intron 6 of 9)	HERVIP10FH-int|LTR|ERV1	-7468	NM_001201574	80224	Hs.288981	NM_025152	HPRD:16600	NUBPL	C14orf127|IND1|huInd1	nucleotide binding protein-like	protein-coding
19-PTNLD28-TUMOR_peak_51276	chr2	15894833	15894976	+	5.09877	NA	Intergenic	Intergenic	63998	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LOC101926966	-	uncharacterized LOC101926966	ncRNA
19-PTNLD28-TUMOR_peak_87103	chr6	36582773	36582926	+	5.09301	NA	Intergenic	AluJo|SINE|Alu	7440	NR_037491	100500885		NR_037491	miRBase:MI0016433	MIR3925	-	microRNA 3925	ncRNA
19-PTNLD28-TUMOR_peak_40520	chr17	19045028	19045139	+	5.09116	NA	intron (NM_001129778, intron 3 of 3)	intron (NM_001129778, intron 3 of 3)	14301	NM_001129778	400581	Hs.661470	NM_001129778		GRAPL	-	GRB2-related adaptor protein-like	protein-coding
19-PTNLD28-TUMOR_peak_96235	chr7	149551832	149551952	+	5.09116	NA	intron (NM_001099220, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	16383	NM_001099220	643641	Hs.731923	NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
19-PTNLD28-TUMOR_peak_34646	chr15	77799936	77800050	+	5.09116	NA	Intergenic	LTR16A2|LTR|ERVL	86750	NM_018200	10363	Hs.69594	NM_018200	HPRD:16116	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
19-PTNLD28-TUMOR_peak_4662	chr1	87169916	87170006	+	5.09029	NA	promoter-TSS (NM_001206653)	promoter-TSS (NM_001206653)	-292	NM_016009	51100	Hs.136309	NM_016009	HPRD:15333	SH3GLB1	Bif-1|PPP1R70|dJ612B15.2	SH3-domain GRB2-like endophilin B1	protein-coding
19-PTNLD28-TUMOR_peak_85025	chr6	5085453	5085646	+	5.08699	NA	promoter-TSS (NM_001145115)	promoter-TSS (NM_001145115)	-171	NM_001145115	648791	Hs.653089	NM_001145115	ENSG00000219607	PPP1R3G	-	protein phosphatase 1, regulatory subunit 3G	protein-coding
19-PTNLD28-TUMOR_peak_83974	chr5	172068111	172068258	+	5.08608	NA	promoter-TSS (NM_001142651)	promoter-TSS (NM_001142651)	-92	NM_001142651	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
19-PTNLD28-TUMOR_peak_104198	chr9	86552844	86552970	+	5.08608	NA	TTS (NM_032307)	TTS (NM_032307)	-16527	NM_001271928	55582	Hs.697514	NM_017576	HPRD:11179	KIF27	-	kinesin family member 27	protein-coding
19-PTNLD28-TUMOR_peak_54084	chr2	91598679	91598856	+	5.08403	NA	Intergenic	HSATII|Satellite|Satellite	249208	NR_027238	654342	Hs.469287	NR_027238	ENSG00000143429	LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_29371	chr14	21492831	21492919	+	5.08286	NA	intron (NM_016250, intron 1 of 15)	CpG	310	NM_001282214	57447	Hs.525205	NM_016250	HPRD:17630	NDRG2	SYLD	NDRG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_40206	chr17	10633603	10633753	+	5.08286	NA	promoter-TSS (NM_001004313)	promoter-TSS (NM_001004313)	-32	NM_001004313	388335	Hs.462230	NM_001004313	HPRD:17371	TMEM220	-	transmembrane protein 220	protein-coding
19-PTNLD28-TUMOR_peak_28309	chr13	52701960	52702092	+	5.08286	NA	intron (NM_199289, intron 1 of 21)	intron (NM_199289, intron 1 of 21)	-1005	NR_110306	101929657	Hs.637461	NR_110306		LOC101929657	-	uncharacterized LOC101929657	ncRNA
19-PTNLD28-TUMOR_peak_90805	chr7	1116078	1116379	+	5.08286	NA	intron (NM_001134395, intron 2 of 4)	intron (NM_001134395, intron 2 of 4)	-10215	NM_001505	2852	Hs.20961	NM_001505	HPRD:03484	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_97544	chr8	21962121	21962230	+	5.08224	NA	TTS (NM_022749)	TTS (NM_022749)	4757	NM_024815	79873	Hs.527101	NM_024815		NUDT18	MTH3	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding
19-PTNLD28-TUMOR_peak_22657	chr12	5369895	5370030	+	5.08205	NA	Intergenic	L2c|LINE|L2	-17645	NR_120477	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA
19-PTNLD28-TUMOR_peak_41076	chr17	33639865	33640023	+	5.08022	NA	Intergenic	L1PA15-16|LINE|L1	60776	NM_001104589	91607	Hs.745059	NM_152270	HPRD:08178	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
19-PTNLD28-TUMOR_peak_10517	chr1	226844360	226844551	+	5.08022	NA	non-coding (NR_103784, exon 2 of 2)	non-coding (NR_103784, exon 2 of 2)	18314	NR_103784	100506443	Hs.664293	NR_103784		ITPKB-IT1	-	ITPKB intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16358	chr10	134772217	134772388	+	5.08022	NA	intron (NR_120627, intron 1 of 1)	intron (NR_120627, intron 1 of 1)	3439	NR_125763	103695432	Hs.680406	NR_125763		LINC01167	TCONS_00018075	long intergenic non-protein coding RNA 1167	ncRNA
19-PTNLD28-TUMOR_peak_100985	chr8	131511496	131511594	+	5.07704	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-55639	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_106872	chr9	140485708	140485796	+	5.07704	NA	promoter-TSS (NM_138462)	promoter-TSS (NM_138462)	-815	NM_138462	116225	Hs.128096	NM_138462	HPRD:15743	ZMYND19	MIZIP	zinc finger, MYND-type containing 19	protein-coding
19-PTNLD28-TUMOR_peak_39001	chr16	81872499	81872629	+	5.07687	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	59701	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_40502	chr17	18958904	18959004	+	5.07687	NA	Intergenic	Intergenic	-8618	NM_006613	10750	Hs.567416	NM_006613		GRAP	-	GRB2-related adaptor protein	protein-coding
19-PTNLD28-TUMOR_peak_60475	chr20	30764478	30764615	+	5.07687	NA	Intergenic	SVA_F|Other|Other	13617	NR_002781	128854	Hs.647447	NR_002781	HPRD:18235	TSPY26P	TSPYL3|bA392M18.1	testis specific protein, Y-linked 26, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_50711	chr2	71794	71882	+	5.07687	NA	Intergenic	Intergenic	-25250	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_67375	chr3	31212508	31212596	+	5.07687	NA	Intergenic	LTR16C|LTR|ERVL	-276399	NM_207359	339896	Hs.657052	NM_207359	HPRD:13557	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_60156	chr20	22383753	22383853	+	5.07687	NA	intron (NR_027090, intron 1 of 2)	intron (NR_027090, intron 1 of 2)	17478	NR_027090	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
19-PTNLD28-TUMOR_peak_38473	chr16	69213303	69213430	+	5.07687	NA	Intergenic	Intergenic	-7684	NM_006750	6645	Hs.461117	NM_006750	HPRD:02491	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)	protein-coding
19-PTNLD28-TUMOR_peak_89859	chr6	147829606	147829809	+	5.07687	NA	promoter-TSS (NM_001030060)	promoter-TSS (NM_001030060)	-121	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_102664	chr9	33025755	33025843	+	5.07654	NA	intron (NM_001539, intron 1 of 8)	intron (NM_001539, intron 1 of 8)	590	NM_001539	3301	Hs.445203	NM_001539	HPRD:04159	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ (Hsp40) homolog, subfamily A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_13322	chr10	46168994	46169101	+	5.07654	NA	promoter-TSS (NM_001128324)	promoter-TSS (NM_001128324)	-786	NM_001282906	93550	Hs.89029	NM_174890	HPRD:16494	ZFAND4	ANUBL1	zinc finger, AN1-type domain 4	protein-coding
19-PTNLD28-TUMOR_peak_104729	chr9	97631969	97632117	+	5.07634	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	59799	NR_031755	100313780		NR_031755		MIR2278	-	microRNA 2278	ncRNA
19-PTNLD28-TUMOR_peak_39854	chr17	4869663	4869781	+	5.07146	NA	intron (NM_004890, intron 1 of 6)	MIR|SINE|MIR	1410	NM_004890	9552	Hs.90436	NM_004890	HPRD:10247	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
19-PTNLD28-TUMOR_peak_109984	chrX	153702138	153702397	+	5.06647	NA	TTS (NM_017514)	TTS (NM_017514)	5329	NM_006014	8270	Hs.444619	NM_006014		LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|ITBA2	L antigen family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_94078	chr7	96653628	96653797	+	5.06647	NA	exon (NM_005221, exon 1 of 3)	exon (NM_005221, exon 1 of 3)	431	NM_005221	1749	Hs.99348	NM_005221	HPRD:02492	DLX5	SHFM1D	distal-less homeobox 5	protein-coding
19-PTNLD28-TUMOR_peak_6499	chr1	147725607	147725707	+	5.06647	NA	intron (NR_102404, intron 17 of 18).2	LTR51|LTR|ERV1	-6315	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA
19-PTNLD28-TUMOR_peak_29269	chr14	19795274	19795424	+	5.06647	NA	Intergenic	MER4B-int|LTR|ERV1	-99020	NR_073459	414763	Hs.617315	NR_073459	ENSG00000215394	BMS1P18	C14orf17|LINC00516	BMS1 pseudogene 18	pseudo
19-PTNLD28-TUMOR_peak_25031	chr12	65919777	65919933	+	5.06079	NA	intron (NR_120432, intron 4 of 4)	MLT1G3|LTR|ERVL-MaLR	116297	NR_120433	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_31636	chr14	90526688	90527193	+	5.06079	NA	Intergenic	CpG	-1169	NM_022054	56659	Hs.510191	NM_022054	HPRD:09563	KCNK13	K2p13.1|THIK-1|THIK1	potassium channel, subfamily K, member 13	protein-coding
19-PTNLD28-TUMOR_peak_46017	chr18	57549705	57549793	+	5.06079	NA	Intergenic	Intergenic	-17443	NM_021127	5366	Hs.96	NM_021127	HPRD:12002	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
19-PTNLD28-TUMOR_peak_75785	chr4	77617338	77617426	+	5.06079	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	122661	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_53615	chr2	75504355	75504478	+	5.06079	NA	Intergenic	Intergenic	-77771	NM_001058	6869	Hs.633301	NM_001058	HPRD:01208	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_99903	chr8	103942148	103942241	+	5.06079	NA	Intergenic	LTR50|LTR|ERVL	-65797	NM_015878	51582	Hs.459106	NM_015878	HPRD:07443	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_36515	chr16	15850562	15850796	+	5.06079	NA	intron (NM_002474, intron 13 of 40)	AluY|SINE|Alu	100208	NM_001040114	4629	Hs.460109	NM_002474	HPRD:01174	MYH11	AAT4|FAA4|SMHC|SMMHC	myosin, heavy chain 11, smooth muscle	protein-coding
19-PTNLD28-TUMOR_peak_34356	chr15	72039957	72040123	+	5.06079	NA	intron (NM_001286429, intron 7 of 11)	LTR44|LTR|ERV1	-56162	NR_120346	101929173	Hs.680593	NR_120346		LOC101929173	-	uncharacterized LOC101929173	ncRNA
19-PTNLD28-TUMOR_peak_25446	chr12	80837875	80837964	+	5.06079	NA	promoter-TSS (NM_001145026)	promoter-TSS (NM_001145026)	-207	NM_001145026	374462	Hs.539284	NM_001145026		PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type, Q	protein-coding
19-PTNLD28-TUMOR_peak_12891	chr10	34694638	34694777	+	5.06079	NA	intron (NM_001184791, intron 4 of 20)	LTR40b|LTR|ERVL	409546	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_98959	chr8	61835323	61835521	+	5.06079	NA	Intergenic	CpG	44885	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_23034	chr12	10892873	10893191	+	5.06079	NA	Intergenic	AluJr|SINE|Alu	-9801	NR_120463	101928162	Hs.112950	NR_120463		LOC101928162	-	uncharacterized LOC101928162	ncRNA
19-PTNLD28-TUMOR_peak_76964	chr4	125099648	125099787	+	5.06079	NA	Intergenic	Intergenic	379872	NR_110838	101927087	Hs.518966	NR_110838	ENSG00000261083	LOC101927087	-	uncharacterized LOC101927087	ncRNA
19-PTNLD28-TUMOR_peak_78741	chr5	4944919	4945009	+	5.06079	NA	Intergenic	Intergenic	-89508	NR_026994	340094	Hs.665092	NR_026994	ENSG00000215231	LINC01020	-	long intergenic non-protein coding RNA 1020	ncRNA
19-PTNLD28-TUMOR_peak_11907	chr10	7275817	7275914	+	5.06079	NA	intron (NM_001018039, intron 9 of 20)	intron (NM_001018039, intron 9 of 20)	175438	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm-like with four mbt domains 2	protein-coding
19-PTNLD28-TUMOR_peak_80976	chr5	81138795	81139027	+	5.06079	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-91839	NM_001256736	23635	Hs.102735	NM_012446		SSBP2	HSPC116|SOSS-B2	single-stranded DNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91507	chr7	20784726	20784980	+	5.06079	NA	intron (NM_178559, intron 16 of 18)	intron (NM_178559, intron 16 of 18)	41655	NM_198956	221833	Hs.195922	NM_182700		SP8	BTD	Sp8 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_103279	chr9	44320920	44321058	+	5.06079	NA	Intergenic	Intergenic	-63596	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_100058	chr8	109095282	109095544	+	5.06079	NA	promoter-TSS (NM_001282863)	promoter-TSS (NM_001282863)	18	NM_001282863	340419	Hs.444834	NM_178565	HPRD:17536	RSPO2	CRISTIN2	R-spondin 2	protein-coding
19-PTNLD28-TUMOR_peak_53266	chr2	68942139	68942269	+	5.06079	NA	Intergenic	Intergenic	-19709	NM_001007231	9938	Hs.531807	NM_014882	HPRD:09805	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
19-PTNLD28-TUMOR_peak_68403	chr3	53409171	53409267	+	5.06079	NA	Intergenic	MIR3|SINE|MIR	-27565	NM_001290207	55802	Hs.476353	NM_018403	HPRD:06113	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
19-PTNLD28-TUMOR_peak_97026	chr8	8126339	8126447	+	5.06079	NA	Intergenic	Intergenic	40301	NR_024362	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_11340	chr1	243285105	243285278	+	5.06079	NA	Intergenic	Intergenic	-20145	NR_029401	731275	Hs.722350	NR_029401		LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
19-PTNLD28-TUMOR_peak_60664	chr20	33297761	33297951	+	5.06001	NA	intron (NM_021202, intron 4 of 4)	CpG-16568	5708	NM_021202	58476	Hs.516994	NM_021202	HPRD:15546	TP53INP2	C20orf110|DOR|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
19-PTNLD28-TUMOR_peak_70577	chr3	127469668	127469836	+	5.05961	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	71973	NM_007283	11343	Hs.277035	NM_007283	HPRD:17574	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
19-PTNLD28-TUMOR_peak_73517	chr3	195600180	195600466	+	5.05961	NA	intron (NM_001010938, intron 9 of 14)	intron (NM_001010938, intron 9 of 14)	8943	NR_106887	102465977		NR_106887		MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
19-PTNLD28-TUMOR_peak_83276	chr5	150950193	150950316	+	5.05961	NA	Intergenic	Intergenic	-1749	NM_001447	2196	Hs.591255	NM_001447	HPRD:05041	FAT2	CDHF8|CDHR9|HFAT2|MEGF1	FAT atypical cadherin 2	protein-coding
19-PTNLD28-TUMOR_peak_42192	chr17	48133945	48134035	+	5.05663	NA	promoter-TSS (NR_038230)	promoter-TSS (NR_038230)	650	NM_002204	3675	Hs.265829	NM_002204	HPRD:05431	ITGA3	CD49C|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_28013	chr13	42846307	42846446	+	5.05554	NA	promoter-TSS (NM_016248)	promoter-TSS (NM_016248)	87	NM_016248	11215	Hs.105105	NM_016248	HPRD:05261	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A kinase (PRKA) anchor protein 11	protein-coding
19-PTNLD28-TUMOR_peak_49378	chr19	45844008	45844096	+	5.05554	NA	promoter-TSS (NM_177417)	promoter-TSS (NM_177417)	54	NM_177417	147700	Hs.298079	NM_145275	HPRD:03212	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
19-PTNLD28-TUMOR_peak_40661	chr17	21279581	21279669	+	5.05554	NA	promoter-TSS (NM_021012)	promoter-TSS (NM_021012)	-74	NM_021012	3768	Hs.200629	NM_021012	HPRD:09083	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding
19-PTNLD28-TUMOR_peak_24998	chr12	65003951	65004057	+	5.05541	NA	promoter-TSS (NM_178169)	promoter-TSS (NM_178169)	-289	NR_040718	283349	Hs.643605	NM_178169	HPRD:08448	RASSF3	RASSF5	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_19554	chr11	67759081	67759179	+	5.05541	NA	exon (NM_030930, exon 11 of 11)	exon (NM_030930, exon 11 of 11)	12465	NM_030930	81622	Hs.502989	NM_030930	HPRD:12191	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_65144	chr22	31688457	31688569	+	5.05541	NA	promoter-TSS (NM_052880)	promoter-TSS (NM_052880)	7	NM_001135911	113791	Hs.26670	NM_052880	HPRD:17518	PIK3IP1	HGFL|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_36657	chr16	19820646	19820768	+	5.05541	NA	intron (NM_153208, intron 8 of 9)	MLT1H2|LTR|ERVL-MaLR	75444	NM_016235	51704	Hs.148685	NM_016235	HPRD:16177	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor, class C, group 5, member B	protein-coding
19-PTNLD28-TUMOR_peak_40769	chr17	26684235	26684339	+	5.05312	NA	promoter-TSS (NM_152464)	promoter-TSS (NM_152464)	325	NM_001290145	26073	Hs.241543	NM_015584	HPRD:17874	POLDIP2	PDIP38|POLD4|p38	polymerase (DNA-directed), delta interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_92431	chr7	47485616	47485843	+	5.05312	NA	intron (NM_022748, intron 4 of 30)	AluY|SINE|Alu	136013	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_26623	chr12	120516755	120516985	+	5.05312	NA	intron (NM_207311, intron 6 of 8)	intron (NM_207311, intron 6 of 8)	37773	NM_001167606	11021	Hs.524788	NM_006861	HPRD:05010	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_57116	chr2	176971990	176972119	+	5.05312	NA	promoter-TSS (NM_021192)	promoter-TSS (NM_021192)	-30	NM_021192	3237	Hs.421136	NM_021192		HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
19-PTNLD28-TUMOR_peak_46093	chr18	60384499	60384716	+	5.04915	NA	intron (NM_194449, intron 1 of 16)	intron (NM_194449, intron 1 of 16)	1935	NM_194449	23239	Hs.465337	NM_194449	HPRD:15145	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_19913	chr11	72905164	72905283	+	5.04742	NA	Intergenic	Intergenic	-24120	NM_176072	5029	Hs.339	NM_002564	HPRD:02499	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y, G-protein coupled, 2	protein-coding
19-PTNLD28-TUMOR_peak_41873	chr17	44273515	44273632	+	5.04742	NA	intron (NR_034172, intron 1 of 1)	AluJb|SINE|Alu	2634	NR_034172	644246	Hs.644600	NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_55300	chr2	120249346	120249476	+	5.04703	NA	intron (NM_002980, intron 2 of 12)	intron (NM_002980, intron 2 of 12)	32617	NM_002980	6344	Hs.42091	NM_002980	HPRD:01628	SCTR	SR	secretin receptor	protein-coding
19-PTNLD28-TUMOR_peak_82569	chr5	139145218	139145334	+	5.04703	NA	Intergenic	CpG	-19468	NR_105053	101929696	Hs.147408	NR_105052	ENSG00000249131	LOC101929696	-	uncharacterized LOC101929696	ncRNA
19-PTNLD28-TUMOR_peak_49588	chr19	47784935	47785023	+	5.04519	NA	Intergenic	AluY|SINE|Alu	6837	NM_178511	255783	Hs.128690	NM_178511	ENSG00000257704	INAFM1	PRR24	InaF-motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_98958	chr8	61823044	61823133	+	5.04519	NA	Intergenic	Intergenic	57219	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
19-PTNLD28-TUMOR_peak_58956	chr2	235200612	235200719	+	5.04519	NA	Intergenic	L2|LINE|L2	205028	NM_005737	10123	Hs.111554	NM_005737	HPRD:11988	ARL4C	ARL7|LAK	ADP-ribosylation factor-like 4C	protein-coding
19-PTNLD28-TUMOR_peak_61931	chr20	50248020	50248110	+	5.04519	NA	intron (NM_006045, intron 15 of 27)	intron (NM_006045, intron 15 of 27)	-68695	NM_001258294	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_32335	chr14	105647531	105647777	+	5.04519	NA	promoter-TSS (NM_177533)	promoter-TSS (NM_177533)	6	NM_177533	256281	Hs.526432	NM_177533	HPRD:14847	NUDT14	UGPP|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding
19-PTNLD28-TUMOR_peak_42329	chr17	49725384	49725538	+	5.04519	NA	intron (NM_001082533, intron 7 of 9)	L2b|LINE|L2	311385	NR_122104	440446	Hs.626751	NR_122104	HPRD:13466	LOC440446	-	uncharacterized LOC440446	ncRNA
19-PTNLD28-TUMOR_peak_83366	chr5	153656643	153656807	+	5.04519	NA	intron (NM_198321, intron 1 of 11)	MLT1H|LTR|ERVL-MaLR	86430	NM_198321	55568	Hs.631797	NM_017540	HPRD:12157	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
19-PTNLD28-TUMOR_peak_83643	chr5	160126467	160126583	+	5.04519	NA	intron (NM_025153, intron 3 of 25)	intron (NM_025153, intron 3 of 25)	152694	NM_025153	23120	Hs.109358	NM_025153	HPRD:08637	ATP10B	ATPVB	ATPase, class V, type 10B	protein-coding
19-PTNLD28-TUMOR_peak_28213	chr13	49638719	49638807	+	5.04519	NA	intron (NR_103528, intron 2 of 25)	LTR72|LTR|ERV1	-45676	NM_014923	22862	Hs.508010	NM_014923	HPRD:13548	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_89950	chr6	150208607	150208732	+	5.04519	NA	TTS (NM_001243325)	TTS (NM_001243325)	-2570	NR_045127	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_63762	chr21	43835305	43835444	+	5.04519	NA	intron (NM_018961, intron 5 of 14)	intron (NM_018961, intron 5 of 14)	11403	NM_001001895	53347	Hs.473912	NM_018961	HPRD:06904	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
19-PTNLD28-TUMOR_peak_58875	chr2	233283706	233283794	+	5.04519	NA	Intergenic	CpG	12198	NM_031313	251	Hs.333509	NM_031313	HPRD:01380	ALPPL2	ALPG|ALPPL|GCAP	alkaline phosphatase, placental-like 2	protein-coding
19-PTNLD28-TUMOR_peak_57146	chr2	177502561	177502805	+	5.04519	NA	promoter-TSS (NR_040001)	promoter-TSS (NR_040001)	201	NR_110599	102724224	Hs.663125	NR_110599		LOC102724224	-	uncharacterized LOC102724224	ncRNA
19-PTNLD28-TUMOR_peak_82315	chr5	134773898	134774019	+	5.04519	NA	Intergenic	Intergenic	9080	NM_130848	140947	Hs.152477	NM_130848	HPRD:16786	DCANP1	C5orf20|DCNP1	dendritic cell-associated nuclear protein	protein-coding
19-PTNLD28-TUMOR_peak_95272	chr7	129918857	129919076	+	5.04447	NA	intron (NM_001869, intron 8 of 10)	L3|LINE|CR1	12263	NM_001869	1358	Hs.490038	NM_001869	HPRD:02821	CPA2	-	carboxypeptidase A2 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_89274	chr6	119216275	119216392	+	5.04358	NA	intron (NM_014034, intron 1 of 3)	CpG	1092	NM_014034	25842	Hs.292316	NM_014034	HPRD:16459	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
19-PTNLD28-TUMOR_peak_102689	chr9	33231170	33231272	+	5.04198	NA	Intergenic	AluJb|SINE|Alu	-8975	NM_014471	27290	Hs.555934	NM_014471	HPRD:11598	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor, Kazal type 4	protein-coding
19-PTNLD28-TUMOR_peak_7015	chr1	153747591	153747718	+	5.04198	NA	promoter-TSS (NM_024330)	promoter-TSS (NM_024330)	-114	NM_024330	11000	Hs.438723	NM_024330	HPRD:11967	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_10744	chr1	229699157	229699309	+	5.03948	NA	Intergenic	Intergenic	-4791	NM_012089	23456	Hs.17614	NM_012089	HPRD:09263	ABCB10	EST20237|M-ABC2|MTABC2	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding
19-PTNLD28-TUMOR_peak_38444	chr16	68772124	68772361	+	5.03714	NA	exon (NM_004360, exon 2 of 16)	exon (NM_004360, exon 2 of 16)	1047	NM_004360	999	Hs.461086	NM_004360	HPRD:01885	CDH1	Arc-1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1, type 1, E-cadherin (epithelial)	protein-coding
19-PTNLD28-TUMOR_peak_95702	chr7	138346119	138346247	+	5.03714	NA	intron (NM_001139456, intron 4 of 14)	LTR23|LTR|ERV1	2786	NM_174959	136306	Hs.99414	NM_174959	HPRD:11235	SVOPL	-	SVOP-like	protein-coding
19-PTNLD28-TUMOR_peak_41053	chr17	33050892	33051100	+	5.03714	NA	Intergenic	Intergenic	143228	NM_207313	124842	Hs.310482	NM_207313	HPRD:14030	TMEM132E	-	transmembrane protein 132E	protein-coding
19-PTNLD28-TUMOR_peak_15966	chr10	121632900	121633141	+	5.03714	NA	promoter-TSS (NM_001256378)	promoter-TSS (NM_001256378)	120	NM_001256379	79892	Hs.124246	NM_024834	HPRD:07624	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
19-PTNLD28-TUMOR_peak_101640	chr8	144653711	144653810	+	5.03413	NA	intron (NM_001100878, intron 3 of 13)	intron (NM_001100878, intron 3 of 13)	1168	NM_001100878	642475	Hs.531406	NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat-like repeat family member 6	protein-coding
19-PTNLD28-TUMOR_peak_107645	chrX	15873555	15873676	+	5.02873	NA	promoter-TSS (NM_003916)	promoter-TSS (NM_003916)	-478	NM_003916	8905	Hs.121592	NM_003916	HPRD:04636	AP1S2	MGC:1902|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor-related protein complex 1, sigma 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_58393	chr2	218899601	218899748	+	5.02873	NA	promoter-TSS (NR_034176)	promoter-TSS (NR_034176)	17	NR_034176	285180	Hs.570069	NM_198483	HPRD:13539	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_16917	chr11	7621621	7621809	+	5.02873	NA	intron (NM_001256568, intron 2 of 20)	intron (NM_001256568, intron 2 of 20)	3298	NM_001256568	8495	Hs.655714	NM_003621	HPRD:04391	PPFIBP2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding
19-PTNLD28-TUMOR_peak_65392	chr22	37585354	37585486	+	5.02873	NA	Intergenic	MER41B|LTR|ERV1	-1090	NM_031910	114904	Hs.22011	NM_031910	HPRD:12718	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
19-PTNLD28-TUMOR_peak_73869	chr4	1811768	1811882	+	5.02873	NA	Intergenic	Intergenic	16786	NM_022965	2261	Hs.1420	NM_000142	HPRD:00624	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_88140	chr6	56819743	56819857	+	5.02873	NA	promoter-TSS (NM_152731)	promoter-TSS (NM_152731)	27	NM_152731	221336	Hs.582993	NM_152731	HPRD:12893	BEND6	C6orf65|bA203B9.1	BEN domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_6930	chr1	153234709	153234838	+	5.02873	NA	TTS (NM_000427)	TTS (NM_000427)	2594	NM_000427	4014	Hs.251680	NM_000427	HPRD:01070	LOR	-	loricrin	protein-coding
19-PTNLD28-TUMOR_peak_5865	chr1	117708769	117708979	+	5.02873	NA	intron (NR_045603, intron 2 of 5)	intron (NR_045603, intron 2 of 5)	37584	NM_001253849	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_77551	chr4	150999768	150999970	+	5.02873	NA	non-coding (NR_036614, exon 1 of 17)	non-coding (NR_036614, exon 1 of 17)	443	NR_036614	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_11937	chr10	7709743	7709911	+	5.02816	NA	promoter-TSS (NM_030569)	promoter-TSS (NM_030569)	-866	NM_001001851	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_96554	chr7	153687103	153687191	+	5.02816	NA	intron (NM_001039350, intron 1 of 25)	intron (NM_001039350, intron 1 of 25)	-62356	NM_130797	1804	Hs.490684	NM_001936	HPRD:00525	DPP6	DPPX|VF2	dipeptidyl-peptidase 6	protein-coding
19-PTNLD28-TUMOR_peak_43962	chr17	79386630	79386767	+	5.02816	NA	intron (NM_001291324, intron 1 of 27)	intron (NM_001291324, intron 1 of 27)	-12120	NR_039894	100616294		NR_039894	miRBase:MI0017378	MIR4740	-	microRNA 4740	ncRNA
19-PTNLD28-TUMOR_peak_65985	chr22	46545669	46545800	+	5.02816	NA	promoter-TSS (NM_005036)	promoter-TSS (NM_005036)	-765	NM_005036	5465	Hs.103110	NM_005036	HPRD:01369	PPARA	NR1C1|PPAR|PPARalpha|hPPAR	peroxisome proliferator-activated receptor alpha	protein-coding
19-PTNLD28-TUMOR_peak_46911	chr19	6476545	6476792	+	5.02816	NA	intron (NM_024898, intron 10 of 22)	intron (NM_024898, intron 10 of 22)	5151	NM_024898	79958	Hs.236449	NM_024898	HPRD:13304	DENND1C	FAM31C	DENN/MADD domain containing 1C	protein-coding
19-PTNLD28-TUMOR_peak_8536	chr1	179845516	179845634	+	5.02816	NA	intron (NM_022347, intron 2 of 2)	intron (NM_022347, intron 2 of 2)	1366	NM_022347	163590	Hs.571797	NM_022347	HPRD:10048	TOR1AIP2	IFRG15|LULL1|NET9	torsin A interacting protein 2	protein-coding
19-PTNLD28-TUMOR_peak_78824	chr5	9348933	9349092	+	5.02816	NA	intron (NM_003966, intron 3 of 22)	intron (NM_003966, intron 3 of 22)	-162433	NR_109935	101929338	Hs.675861	NR_109935	ENSG00000251370	CTD-2201E9.1	-	uncharacterized LOC101929338	ncRNA
19-PTNLD28-TUMOR_peak_31682	chr14	91580381	91580632	+	5.02816	NA	promoter-TSS (NM_001286471)	promoter-TSS (NM_001286471)	149	NM_001286472	80017	Hs.309849	NM_024952	HPRD:16612	C14orf159	-	chromosome 14 open reading frame 159	protein-coding
19-PTNLD28-TUMOR_peak_59414	chr20	982809	982969	+	5.02816	NA	promoter-TSS (NM_001040007)	promoter-TSS (NM_001040007)	18	NM_001040007	343637	Hs.444980	NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
19-PTNLD28-TUMOR_peak_9735	chr1	206589447	206589576	+	5.02759	NA	intron (NM_001170637, intron 8 of 19)	intron (NM_001170637, intron 8 of 19)	32144	NR_120535	100996712	Hs.497575	NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_28717	chr13	95953081	95953246	+	5.02759	NA	intron (NM_001105515, intron 1 of 20)	intron (NM_001105515, intron 1 of 20)	524	NM_001105515	10257	Hs.508423	NM_005845	HPRD:05583	ABCC4	EST170205|MOAT-B|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_64253	chr22	18427241	18427437	+	5.02759	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	36388	NR_030378	693233		NR_030378	miRBase:MI0003663	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
19-PTNLD28-TUMOR_peak_60911	chr20	36527042	36527200	+	5.02759	NA	Intergenic	Intergenic	-4378	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_10714	chr1	229312321	229312522	+	5.02759	NA	Intergenic	HERVH-int|LTR|ERV1	-94388	NM_001271998	5867	Hs.296169	NM_004578	HPRD:01541	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_43206	chr17	70339297	70339432	+	5.02710	NA	Intergenic	Intergenic	222203	NM_000346	6662	Hs.647409	NM_000346	HPRD:06427	SOX9	CMD1|CMPD1|SRA1	SRY (sex determining region Y)-box 9	protein-coding
19-PTNLD28-TUMOR_peak_74451	chr4	9709579	9709684	+	5.02710	NA	Intergenic	Intergenic	-73627	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_34883	chr15	83182134	83182237	+	5.02606	NA	intron (NR_026811, intron 1 of 7).3	CpG	788	NR_102747	727751	Hs.546614	NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_14250	chr10	73680140	73680254	+	5.02371	NA	Intergenic	Intergenic	-43923	NM_004273	9469	Hs.158304	NM_004273	HPRD:07052	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_40119	chr17	8649402	8649570	+	5.02371	NA	Intergenic	CpG	-1332	NM_001158261	146849	Hs.121438	NM_144681	HPRD:08731	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_34658	chr15	77904269	77904452	+	5.02371	NA	Intergenic	Intergenic	20509	NM_032808	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_48912	chr19	39050211	39050373	+	5.02371	NA	intron (NM_000540, intron 89 of 105)	intron (NM_000540, intron 89 of 105)	58383	NM_007181	11184	Hs.95424	NM_007181	HPRD:03583	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_51238	chr2	13147143	13147231	+	5.02371	NA	promoter-TSS (NR_038434)	promoter-TSS (NR_038434)	-49	NR_038434	100506474	Hs.242196	NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
19-PTNLD28-TUMOR_peak_27530	chr13	25787860	25787991	+	5.02371	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	32455	NR_120427	102723318	Hs.549877	NR_120427		LINC01053	-	long intergenic non-protein coding RNA 1053	ncRNA
19-PTNLD28-TUMOR_peak_48448	chr19	30718662	30718752	+	5.02371	NA	Intergenic	CpG	-144621	NM_014717	9745	Hs.378901	NM_014717	HPRD:15825	ZNF536	-	zinc finger protein 536	protein-coding
19-PTNLD28-TUMOR_peak_46189	chr18	67067551	67067655	+	5.02371	NA	promoter-TSS (NM_152721)	promoter-TSS (NM_152721)	-681	NM_152721	220164	Hs.278285	NM_152721	HPRD:13244	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
19-PTNLD28-TUMOR_peak_79311	chr5	31825763	31825907	+	5.02371	NA	intron (NM_178140, intron 1 of 23)	intron (NM_178140, intron 1 of 23)	26804	NM_178140	23037	Hs.481819	NM_015022	HPRD:10142	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_20463	chr11	86475539	86475744	+	5.02371	NA	Intergenic	Intergenic	-26460	NM_001293180	11098	Hs.25338	NM_007173	HPRD:07149	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine, 23	protein-coding
19-PTNLD28-TUMOR_peak_16362	chr10	134788137	134788225	+	5.02371	NA	non-coding (NR_046231, exon 2 of 3)	non-coding (NR_046231, exon 2 of 3)	9143	NR_046231	399829	Hs.252872	NR_046231	ENSG00000240707	LINC01168	-	long intergenic non-protein coding RNA 1168	ncRNA
19-PTNLD28-TUMOR_peak_38044	chr16	57456390	57456478	+	5.02371	NA	Intergenic	L1MB5|LINE|L1	17755	NM_002987	6361	Hs.546294	NM_002987	HPRD:03309	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	chemokine (C-C motif) ligand 17	protein-coding
19-PTNLD28-TUMOR_peak_38651	chr16	72165044	72165134	+	5.02371	NA	intron (NM_031293, intron 10 of 20)	intron (NM_031293, intron 10 of 20)	-36874	NM_001142318	54957	Hs.134406	NM_017853	HPRD:11655	TXNL4B	DLP|Dim2	thioredoxin-like 4B	protein-coding
19-PTNLD28-TUMOR_peak_33770	chr15	59280371	59280462	+	5.02371	NA	promoter-TSS (NM_001270530)	promoter-TSS (NM_001270530)	71	NM_001270530	54778	Hs.404423	NM_017610	HPRD:09318	RNF111	ARK	ring finger protein 111	protein-coding
19-PTNLD28-TUMOR_peak_75667	chr4	74734896	74735301	+	5.02371	NA	promoter-TSS (NM_001511)	promoter-TSS (NM_001511)	-11	NM_001511	2919	Hs.789	NM_001511	HPRD:01119	CXCL1	FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1	chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)	protein-coding
19-PTNLD28-TUMOR_peak_43354	chr17	72889446	72889708	+	5.02371	NA	exon (NM_178128, exon 1 of 6)	exon (NM_178128, exon 1 of 6)	332	NM_178128	283985	Hs.448845	NM_178128	HPRD:13285	FADS6	-	fatty acid desaturase 6	protein-coding
19-PTNLD28-TUMOR_peak_14895	chr10	93373534	93373723	+	5.02371	NA	Intergenic	Intergenic	-2411	NR_024467	100188947	Hs.535293	NR_024467		HECTD2-AS1	-	HECTD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_25184	chr12	69385241	69385352	+	5.02371	NA	Intergenic	L1PA3|LINE|L1	-28276	NM_001874	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_76612	chr4	111542030	111542184	+	5.01983	NA	intron (NM_000325, intron 2 of 2)	CpG	2147	NM_000325	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_47795	chr19	16296604	16296806	+	5.01983	NA	intron (NM_014077, intron 2 of 3)	CpG-13170	470	NM_014077	26017	Hs.631614	NM_014077	HPRD:13305	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32, member A	protein-coding
19-PTNLD28-TUMOR_peak_60272	chr20	24911613	24911902	+	5.01567	NA	Intergenic	HERVE-int|LTR|ERV1	-18109	NM_003650	8530	Hs.143212	NM_003650	HPRD:04458	CST7	CMAP	cystatin F (leukocystatin)	protein-coding
19-PTNLD28-TUMOR_peak_17406	chr11	15889551	15889735	+	5.01567	NA	Intergenic	LTR62|LTR|ERVL	101524	NR_106721	102464826		NR_106721		MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
19-PTNLD28-TUMOR_peak_9460	chr1	203598725	203598822	+	5.01555	NA	intron (NM_001684, intron 1 of 20)	CpG	2858	NM_001684	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
19-PTNLD28-TUMOR_peak_18287	chr11	44961392	44961500	+	5.01526	NA	intron (NM_001258321, intron 1 of 7)	intron (NM_001258321, intron 1 of 7)	10313	NM_001258320	9537	Hs.554791	NM_006034	HPRD:15545	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
19-PTNLD28-TUMOR_peak_32039	chr14	100512884	100512972	+	5.01381	NA	Intergenic	AluSz|SINE|Alu	-18823	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_54779	chr2	109576020	109576118	+	5.01381	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	29759	NM_022336	10913	Hs.171971	NM_022336	HPRD:04974	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
19-PTNLD28-TUMOR_peak_84074	chr5	173100871	173100959	+	5.01381	NA	Intergenic	Intergenic	-57249	NM_138369	91272	Hs.425091	NM_138369	HPRD:13309	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
19-PTNLD28-TUMOR_peak_40837	chr17	27444264	27444378	+	5.01381	NA	intron (NM_203318, intron 10 of 40)	intron (NM_203318, intron 10 of 40)	-41694	NM_004740	9220	Hs.462590	NM_004740		TIAF1	MAJN|SPR210	TGFB1-induced anti-apoptotic factor 1	protein-coding
19-PTNLD28-TUMOR_peak_105539	chr9	116372209	116372375	+	5.01381	NA	Intergenic	Intergenic	15858	NM_001276262	5998	Hs.494875	NM_017790	HPRD:03720	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding
19-PTNLD28-TUMOR_peak_108305	chrX	49643542	49643803	+	5.01381	NA	promoter-TSS (NM_001145073)	promoter-TSS (NM_001145073)	287	NR_026742	158572	Hs.408191	NM_001025449	HPRD:18740	USP27X-AS1	-	USP27X antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_84722	chr6	1390518	1390662	+	5.01381	NA	promoter-TSS (NR_106778)	promoter-TSS (NR_106778)	56	NR_106778	102466720		NR_106778		MIR6720	hsa-mir-6720	microRNA 6720	ncRNA
19-PTNLD28-TUMOR_peak_4455	chr1	78354149	78354317	+	5.01381	NA	promoter-TSS (NM_144573)	promoter-TSS (NM_144573)	33	NM_144573	91624	Hs.612385	NM_144573	HPRD:11388	NEXN	CMH20|NELIN	nexilin (F actin binding protein)	protein-coding
19-PTNLD28-TUMOR_peak_50649	chr1_gl000192_random	27977	28065	+	5.01381	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	379489	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_84885	chr6	3390029	3390185	+	5.00860	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	55140	NR_104448	63027	Hs.713588	NM_015482	HPRD:12904	SLC22A23	C6orf85	solute carrier family 22, member 23	protein-coding
19-PTNLD28-TUMOR_peak_7577	chr1	160067772	160067885	+	5.00860	NA	intron (NM_001206665, intron 2 of 7)	intron (NM_001206665, intron 2 of 7)	611	NM_052868	93185	Hs.332012	NM_052868	HPRD:09438	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_36046	chr16	4896898	4897110	+	5.00830	NA	promoter-TSS (NM_001079514)	promoter-TSS (NM_001079514)	299	NM_032569	84656	Hs.387255	NM_032569	HPRD:17625	GLYR1	BM045|HIBDL|N-PAC|NP60	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding
19-PTNLD28-TUMOR_peak_78767	chr5	6765897	6766066	+	5.00830	NA	Intergenic	Intergenic	19880	NM_001171806	11044	Hs.481542	NM_006999	HPRD:09239	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	PAP associated domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_5333	chr1	109424129	109424217	+	5.00830	NA	intron (NM_013296, intron 1 of 14)	intron (NM_013296, intron 1 of 14)	4570	NM_013296	29899	Hs.584901	NM_013296	HPRD:06609	GPSM2	CMCS|DFNB82|LGN|PINS	G-protein signaling modulator 2	protein-coding
19-PTNLD28-TUMOR_peak_82878	chr5	142621622	142621710	+	5.00830	NA	Intergenic	L1MC4|LINE|L1	161588	NM_000176	2908	Hs.122926	NM_000176	HPRD:00679	NR3C1	GCCR|GCR|GR|GRL	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	protein-coding
19-PTNLD28-TUMOR_peak_42062	chr17	46655731	46655822	+	5.00508	NA	promoter-TSS (NM_024015)	promoter-TSS (NM_024015)	-33	NM_024015	3214	Hs.664706	NM_024015		HOXB4	HOX-2.6|HOX2|HOX2F	homeobox B4	protein-coding
19-PTNLD28-TUMOR_peak_103535	chr9	68695746	68695859	+	5.00508	NA	Intergenic	Intergenic	-30739	NR_034006	100132352	Hs.231861	NR_034006		LOC100132352	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_43024	chr17	64901510	64901679	+	5.00508	NA	Intergenic	Intergenic	28203	NM_145811	27091	Hs.278907	NM_014404	HPRD:05912	CACNG5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_9111	chr1	200008245	200008543	+	5.00508	NA	intron (NM_003822, intron 1 of 6)	CpG	-3559	NM_001276464	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_89279	chr6	119399203	119399322	+	5.00508	NA	intron (NM_001288576, intron 1 of 15)	CpG	550	NM_024581	79632	Hs.443789	NM_024581	HPRD:09856	FAM184A	C6orf60	family with sequence similarity 184, member A	protein-coding
19-PTNLD28-TUMOR_peak_85979	chr6	24719644	24719877	+	5.00352	NA	promoter-TSS (NM_030939)	promoter-TSS (NM_030939)	-357	NM_030939	81688	Hs.744857	NM_030939		C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_61842	chr20	49275390	49275478	+	5.00203	NA	intron (NR_111906, intron 2 of 2)	intron (NR_111906, intron 2 of 2)	13426	NR_111906	100506175	Hs.658270	NR_111906		LOC100506175	-	uncharacterized LOC100506175	ncRNA
19-PTNLD28-TUMOR_peak_73534	chr3	195688199	195688498	+	5.00203	NA	intron (NR_003264, intron 16 of 16)	intron (NR_003264, intron 16 of 16)	28802	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_50924	chr2	8618065	8618159	+	5.00122	NA	Intergenic	Intergenic	105810	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LOC101929567	-	uncharacterized LOC101929567	ncRNA
19-PTNLD28-TUMOR_peak_18613	chr11	56929670	56929958	+	5.00122	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-19407	NM_001005210	219527	Hs.199853	NM_001005210	HPRD:16990	LRRC55	-	leucine rich repeat containing 55	protein-coding
19-PTNLD28-TUMOR_peak_55417	chr2	121846547	121846867	+	5.00122	NA	Intergenic	Intergenic	196071	NM_014553	29842	Hs.156471	NM_014553	HPRD:18175	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2-like 1	protein-coding
19-PTNLD28-TUMOR_peak_39744	chr17	3570760	3570915	+	4.99890	NA	intron (NR_037928, intron 12 of 14)	intron (NR_037928, intron 12 of 14)	1136	NM_014604	30851	Hs.12956	NM_014604	HPRD:18160	TAX1BP3	TIP-1	Tax1 (human T-cell leukemia virus type I) binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_21635	chr11	120170828	120170916	+	4.99438	NA	intron (NM_014352, intron 5 of 12)	intron (NM_014352, intron 5 of 12)	-24966	NM_174926	219902	Hs.643516	NM_174926	HPRD:14461	TMEM136	-	transmembrane protein 136	protein-coding
19-PTNLD28-TUMOR_peak_4259	chr1	68444749	68444837	+	4.99438	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	71667	NM_004675	9077	Hs.194695	NM_004675	HPRD:05547	DIRAS3	ARHI|NOEY2	DIRAS family, GTP-binding RAS-like 3	protein-coding
19-PTNLD28-TUMOR_peak_49225	chr19	42756563	42756656	+	4.99438	NA	intron (NM_006494, intron 1 of 3)	intron (NM_006494, intron 1 of 3)	2178	NM_001301035	2077	Hs.655969	NM_006494	HPRD:09942	ERF	CRS4|PE-2|PE2	Ets2 repressor factor	protein-coding
19-PTNLD28-TUMOR_peak_19302	chr11	65405766	65405970	+	4.98876	NA	TTS (NM_032223)	TTS (NM_032223)	290	NM_006747	6494	Hs.530477	NM_006747	HPRD:03713	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
19-PTNLD28-TUMOR_peak_55776	chr2	132440631	132440743	+	4.98876	NA	Intergenic	AluSx|SINE|Alu	-39377	NM_013310	29798	Hs.635289	NM_013310	HPRD:12811	C2orf27A	C2orf27|C2orf27B	chromosome 2 open reading frame 27A	protein-coding
19-PTNLD28-TUMOR_peak_13185	chr10	43633080	43633310	+	4.98876	NA	promoter-TSS (NM_018590)	promoter-TSS (NM_018590)	-698	NM_018590	55454	Hs.657569	NM_018590	HPRD:11348	CSGALNACT2	CHGN2|GALNACT-2|GALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_7786	chr1	162874625	162874717	+	4.98876	NA	Intergenic	Intergenic	-36066	NM_178550	339512	Hs.407631	NM_178550	HPRD:14661	C1orf110	-	chromosome 1 open reading frame 110	protein-coding
19-PTNLD28-TUMOR_peak_49058	chr19	40730821	40730955	+	4.98876	NA	intron (NM_024877, intron 1 of 4)	intron (NM_024877, intron 1 of 4)	1709	NM_024877	79935	Hs.631603	NM_024877	HPRD:08581	CNTD2	CCNP	cyclin N-terminal domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_62466	chr20	60717874	60717994	+	4.98876	NA	promoter-TSS (NM_198935)	promoter-TSS (NM_198935)	580	NM_002792	5688	Hs.233952	NM_002792	HPRD:05967	PSMA7	C6|HSPC|RC6-1|XAPC7	proteasome (prosome, macropain) subunit, alpha type, 7	protein-coding
19-PTNLD28-TUMOR_peak_98365	chr8	40809113	40809214	+	4.98662	NA	Intergenic	L2b|LINE|L2	-53820	NM_001135731	79698	Hs.591850	NM_024645	HPRD:07837	ZMAT4	-	zinc finger, matrin-type 4	protein-coding
19-PTNLD28-TUMOR_peak_31276	chr14	74977718	74977806	+	4.98662	NA	intron (NM_000428, intron 19 of 35)	intron (NM_000428, intron 19 of 35)	17339	NM_194279	122961	Hs.291079	NM_194279		ISCA2	HBLD1|ISA2|c14_5557	iron-sulfur cluster assembly 2	protein-coding
19-PTNLD28-TUMOR_peak_12402	chr10	23659189	23659315	+	4.98662	NA	Intergenic	MER39|LTR|ERV1	-25480	NM_153714	256815	Hs.522360	NM_153714	HPRD:12585	C10orf67	-	chromosome 10 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_3966	chr1	62249101	62249191	+	4.98662	NA	intron (NM_176877, intron 7 of 42)	FRAM|SINE|Alu	40997	NM_176877	10207	Hs.478125	NM_005799	HPRD:04434	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_82694	chr5	140602877	140602967	+	4.98662	NA	5' UTR (NM_018934, exon 1 of 1)	5' UTR (NM_018934, exon 1 of 1)	1024	NM_018934	56122	Hs.658497	NM_018934	HPRD:06958	PCDHB14	PCDH-BETA14	protocadherin beta 14	protein-coding
19-PTNLD28-TUMOR_peak_36898	chr16	24267356	24267468	+	4.98662	NA	5' UTR (NM_006539, exon 1 of 4)	5' UTR (NM_006539, exon 1 of 4)	538	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_48999	chr19	39872939	39873143	+	4.98662	NA	intron (NM_018028, intron 14 of 15)	intron (NM_018028, intron 14 of 15)	8794	NM_001256826	54623	Hs.466714	NM_019088	HPRD:10140	PAF1	F23149_1|PD2	Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_63737	chr21	43547364	43547555	+	4.98662	NA	intron (NM_001004416, intron 19 of 22)	intron (NM_001004416, intron 19 of 22)	-18815	NR_027243	150147	Hs.558646	NM_152507	HPRD:10740	C21orf128	-	chromosome 21 open reading frame 128	ncRNA
19-PTNLD28-TUMOR_peak_75668	chr4	74783002	74783122	+	4.98662	NA	Intergenic	Intergenic	47953	NR_046035	2919	Hs.789	NM_001511	HPRD:01119	CXCL1	FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1	chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)	protein-coding
19-PTNLD28-TUMOR_peak_46705	chr19	3116396	3116526	+	4.98662	NA	intron (NM_002067, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	-19569	NM_002068	2769	Hs.73797	NM_002068	HPRD:00760	GNA15	GNA16	guanine nucleotide binding protein (G protein), alpha 15 (Gq class)	protein-coding
19-PTNLD28-TUMOR_peak_26448	chr12	115100445	115100551	+	4.98662	NA	Intergenic	Intergenic	21471	NM_016569	6926	Hs.744016	NM_005996	HPRD:03373	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
19-PTNLD28-TUMOR_peak_3782	chr1	58314167	58314342	+	4.98662	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	-11961	NR_104363	101926890	Hs.662207	NR_104362		DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_92917	chr7	65605595	65605770	+	4.98662	NA	intron (NM_001040647, intron 3 of 4)	L1MEf|LINE|L1	25877	NM_014478	27297	Hs.300684	NM_014478	HPRD:12089	CRCP	CGRP-RCP|CGRPRCP|RCP|RCP9	CGRP receptor component	protein-coding
19-PTNLD28-TUMOR_peak_90760	chr7	818384	818573	+	4.98662	NA	intron (NR_075098, intron 11 of 12)	intron (NR_075098, intron 11 of 12)	-36716	NM_001171946	23353	Hs.438072	NM_025154	HPRD:16257	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76181	chr4	88263292	88263397	+	4.98662	NA	intron (NM_016245, intron 5 of 6)	AluSq|SINE|Alu	-19286	NM_178135	345275	Hs.284414	NM_178135	HPRD:18023	HSD17B13	NIIL497|SCDR9|SDR16C3	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding
19-PTNLD28-TUMOR_peak_73179	chr3	190057037	190057216	+	4.98662	NA	Intergenic	Intergenic	-16891	NM_021101	9076	Hs.439060	NM_021101	HPRD:04760	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
19-PTNLD28-TUMOR_peak_53300	chr2	69809016	69809129	+	4.98662	NA	intron (NM_014911, intron 2 of 21)	AluJr|SINE|Alu	-61769	NR_003705	100124535	Hs.693447	NR_003705		SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
19-PTNLD28-TUMOR_peak_87763	chr6	45803542	45803652	+	4.98662	NA	Intergenic	Intergenic	101737	NR_045674	53405	Hs.485489	NM_016929	HPRD:06292	CLIC5	MST130|MSTP130	chloride intracellular channel 5	protein-coding
19-PTNLD28-TUMOR_peak_91996	chr7	35226457	35226545	+	4.98662	NA	promoter-TSS (NR_002833)	promoter-TSS (NR_002833)	-727	NR_002833	554236	Hs.594815	NR_002833		DPY19L2P1	-	DPY19L2 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_46098	chr18	60666807	60666906	+	4.98662	NA	Intergenic	Intergenic	284184	NM_194449	23239	Hs.465337	NM_194449	HPRD:15145	PHLPP1	PHLPP|PLEKHE1|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_57266	chr2	181527951	181528091	+	4.98662	NA	Intergenic	Intergenic	-28810	NR_104322	101669767		NR_104319		SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_42425	chr17	54240664	54240752	+	4.98662	NA	intron (NM_153228, intron 1 of 16)	intron (NM_153228, intron 1 of 16)	9872	NM_153228	162282	Hs.673040	NM_153228	HPRD:08238	ANKFN1	-	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42077	chr17	46749138	46749469	+	4.98662	NA	Intergenic	Intergenic	-39382	NR_029582	406972		NR_029582	miRBase:MI0000238	MIR196A1	MIRN196-1|MIRN196A1	microRNA 196a-1	ncRNA
19-PTNLD28-TUMOR_peak_17911	chr11	33657868	33657961	+	4.98446	NA	intron (NM_012194, intron 15 of 19)	AluSz|SINE|Alu	64372	NM_001166692	100131378	Hs.709466	NM_001166692		C11orf91	-	chromosome 11 open reading frame 91	protein-coding
19-PTNLD28-TUMOR_peak_65427	chr22	37959849	37959956	+	4.98446	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	3431	NM_152243	11135	Hs.225356	NM_152243	HPRD:07303	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding
19-PTNLD28-TUMOR_peak_70229	chr3	123351766	123351906	+	4.98446	NA	intron (NM_053025, intron 29 of 33)	AluJb|SINE|Alu	-12306	NM_053032	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_91879	chr7	31028314	31028561	+	4.98267	NA	Intergenic	Intergenic	24801	NM_000823	2692	Hs.767	NM_000823	HPRD:00748	GHRHR	GHRFR|GRFR|IGHD1B	growth hormone releasing hormone receptor	protein-coding
19-PTNLD28-TUMOR_peak_20196	chr11	77118816	77118910	+	4.98267	NA	intron (NM_002576, intron 1 of 14)	intron (NM_002576, intron 1 of 14)	66245	NM_002576	5058	Hs.435714	NM_002576	HPRD:03995	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_103220	chr9	42460350	42460438	+	4.98267	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-8195	NR_026759	100133036	Hs.584289	NR_026759	ENSG00000223839	FAM95B1	-	family with sequence similarity 95, member B1	ncRNA
19-PTNLD28-TUMOR_peak_87354	chr6	40472247	40472424	+	4.98267	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	82791	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_38322	chr16	67303766	67303883	+	4.98267	NA	intron (NM_004594, intron 15 of 15)	intron (NM_004594, intron 15 of 15)	-7589	NM_015432	25894	Hs.188781	NM_015432	HPRD:10890	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding
19-PTNLD28-TUMOR_peak_75708	chr4	76052465	76052557	+	4.98267	NA	Intergenic	L1PA2|LINE|L1	-156939	NR_121617	100507388	Hs.570765	NR_121617	ENSG00000249717	LOC100507388	-	uncharacterized LOC100507388	ncRNA
19-PTNLD28-TUMOR_peak_27042	chr12	125478783	125478930	+	4.98267	NA	intron (NM_080626, intron 1 of 2)	L2a|LINE|L2	662	NM_080626	140707	Hs.596464	NM_080626		BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|KG19	BRI3 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_9561	chr1	204711888	204712003	+	4.98267	NA	Intergenic	Intergenic	-57348	NM_201630	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_43815	chr17	77132875	77132963	+	4.98267	NA	intron (NM_001082575, intron 4 of 14)	intron (NM_001082575, intron 4 of 14)	61900	NM_001042573	64772	Hs.29288	NM_022759		ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
19-PTNLD28-TUMOR_peak_49099	chr19	41140460	41140626	+	4.98267	NA	Intergenic	Intergenic	33266	NM_001042545	8425	Hs.466766	NM_003573	HPRD:05274	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_40517	chr17	19022166	19022266	+	4.98267	NA	Intergenic	Intergenic	-8566	NM_001129778	400581	Hs.661470	NM_001129778		GRAPL	-	GRB2-related adaptor protein-like	protein-coding
19-PTNLD28-TUMOR_peak_41221	chr17	36453281	36453468	+	4.98152	NA	intron (NM_032351, intron 1 of 7)	intron (NM_032351, intron 1 of 7)	385	NM_032351	84311	Hs.537279	NM_032351	HPRD:14764	MRPL45	L45mt|MRP-L45	mitochondrial ribosomal protein L45	protein-coding
19-PTNLD28-TUMOR_peak_37427	chr16	32737905	32738031	+	4.98152	NA	Intergenic	CpG	-50518	NR_110910	24150	Hs.592038	NM_015369		TP53TG3	P53TG3|TP53TG3A	TP53 target 3	protein-coding
19-PTNLD28-TUMOR_peak_56203	chr2	148778927	148779084	+	4.97841	NA	promoter-TSS (NM_001190881)	promoter-TSS (NM_001190881)	168	NM_181742	5000	Hs.558364	NM_002552	HPRD:09118	ORC4	ORC4L|ORC4P	origin recognition complex, subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_34872	chr15	83024487	83024590	+	4.97654	NA	intron (NR_004847, intron 1 of 4)	CpG	697	NR_004847	100134869	Hs.735222	NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_24649	chr12	56375775	56375904	+	4.97436	NA	intron (NM_001252037, intron 1 of 4)	AluSx1|SINE|Alu	8044	NM_001252037	5869	Hs.157659	NM_002868	HPRD:01544	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_99164	chr8	71527372	71527565	+	4.97436	NA	intron (NR_038881, intron 1 of 3)	L2|LINE|L2	6656	NR_038881	286190	Hs.662204	NR_038881	ENSG00000246366	LOC286190	-	uncharacterized LOC286190	ncRNA
19-PTNLD28-TUMOR_peak_46399	chr18	77301004	77301183	+	4.97436	NA	Intergenic	Intergenic	-138708	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_3214	chr1	46754276	46754444	+	4.97436	NA	intron (NM_006369, intron 3 of 9)	intron (NM_006369, intron 3 of 9)	14678	NM_006369	10489	Hs.144941	NM_006369	HPRD:10102	LRRC41	MUF1	leucine rich repeat containing 41	protein-coding
19-PTNLD28-TUMOR_peak_46704	chr19	3094299	3094393	+	4.97436	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	-62	NM_002067	2767	Hs.650575	NM_002067		GNA11	FBH|FBH2|FHH2|GNA-11|HHC2|HYPOC2	guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	protein-coding
19-PTNLD28-TUMOR_peak_21165	chr11	112037363	112037469	+	4.97436	NA	promoter-TSS (NM_031275)	promoter-TSS (NM_031275)	-679	NM_031275	56158	Hs.524039	NM_031275	HPRD:12045	TEX12	-	testis expressed 12	protein-coding
19-PTNLD28-TUMOR_peak_55478	chr2	122995585	122995764	+	4.97335	NA	Intergenic	Intergenic	482553	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_100619	chr8	125739997	125740229	+	4.97335	NA	intron (NM_001282974, intron 1 of 13)	CpG	635	NM_001282971	9788	Hs.336994	NM_014751	HPRD:12243	MTSS1	MIM|MIMA|MIMB	metastasis suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_19495	chr11	67202759	67202919	+	4.97335	NA	TTS (NM_003952)	TTS (NM_003952)	2314	NM_005608	5790	Hs.155975	NM_005608		PTPRCAP	CD45-AP|LPAP	protein tyrosine phosphatase, receptor type, C-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_19956	chr11	73363134	73363275	+	4.96985	NA	intron (NM_001130034, intron 4 of 7)	intron (NM_001130034, intron 4 of 7)	3469	NM_001130036	58473	Hs.445489	NM_021200	HPRD:09630	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding
19-PTNLD28-TUMOR_peak_77438	chr4	146403403	146403709	+	4.96985	NA	promoter-TSS (NM_001003688)	promoter-TSS (NM_001003688)	-401	NM_001003688	4086	Hs.604588	NM_005900	HPRD:03356	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
19-PTNLD28-TUMOR_peak_77439	chr4	146403897	146404037	+	4.96985	NA	promoter-TSS (NM_001003688)	promoter-TSS (NM_001003688)	10	NM_001003688	4086	Hs.604588	NM_005900	HPRD:03356	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
19-PTNLD28-TUMOR_peak_79769	chr5	46352623	46352711	+	4.96985	NA	Intergenic	ALR/Alpha|Satellite|centr	-656447	NM_021072	348980	Hs.353176	NM_021072		HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	protein-coding
19-PTNLD28-TUMOR_peak_43080	chr17	65714275	65714363	+	4.96699	NA	intron (NM_015462, intron 1 of 17)	intron (NM_015462, intron 1 of 17)	258	NM_015462	25926	Hs.463936	NM_015462	HPRD:10900	NOL11	-	nucleolar protein 11	protein-coding
19-PTNLD28-TUMOR_peak_66446	chr3	9343631	9343732	+	4.96699	NA	Intergenic	Intergenic	-52312	NM_001033117	9901	Hs.654743	NM_014850	HPRD:12108	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
19-PTNLD28-TUMOR_peak_1426	chr1	23115026	23115139	+	4.96699	NA	intron (NM_004442, intron 3 of 15)	intron (NM_004442, intron 3 of 15)	69072	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
19-PTNLD28-TUMOR_peak_26998	chr12	125169584	125169757	+	4.96200	NA	Intergenic	Intergenic	-117660	NM_001206654	9612	Hs.137510	NM_006312	HPRD:02910	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
19-PTNLD28-TUMOR_peak_34853	chr15	82797556	82797659	+	4.95847	NA	intron (NR_026811, intron 1 of 7)	CpG	792	NR_033936	80154	Hs.454640	NM_025084		GOLGA2P10	-	golgin A2 pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_407	chr1	6761399	6761511	+	4.95747	NA	intron (NM_018198, intron 1 of 15)	CpG	511	NM_018198	55735	Hs.462640	NM_018198	HPRD:07112	DNAJC11	dJ126A5.1	DnaJ (Hsp40) homolog, subfamily C, member 11	protein-coding
19-PTNLD28-TUMOR_peak_37458	chr16	33155020	33155138	+	4.95747	NA	Intergenic	CpG	-50504	NR_110897	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
19-PTNLD28-TUMOR_peak_69881	chr3	113251825	113251920	+	4.95747	NA	exon (NM_017699, exon 1 of 25)	exon (NM_017699, exon 1 of 25)	654	NM_017699	54847	Hs.591291	NM_017699	HPRD:12111	SIDT1	B830021E24Rik|SID-1|SID1	SID1 transmembrane family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_29455	chr14	23270936	23271280	+	4.95747	NA	intron (NM_001126105, intron 3 of 10)	intron (NM_001126105, intron 3 of 10)	13993	NR_040448	9056	Hs.513147	NM_003982	HPRD:04667	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	protein-coding
19-PTNLD28-TUMOR_peak_76440	chr4	103681570	103681744	+	4.95747	NA	intron (NM_005908, intron 1 of 16)	intron (NM_005908, intron 1 of 16)	494	NM_005908	4126	Hs.480415	NM_005908	HPRD:02008	MANBA	MANB1	mannosidase, beta A, lysosomal	protein-coding
19-PTNLD28-TUMOR_peak_4902	chr1	93545059	93545156	+	4.95747	NA	intron (NM_001164393, intron 1 of 12)	intron (NM_001164393, intron 1 of 12)	315	NM_001164392	22823	Hs.31016	NM_007358	HPRD:14342	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_77552	chr4	151000306	151000636	+	4.95747	NA	non-coding (NR_036614, exon 1 of 17)	non-coding (NR_036614, exon 1 of 17)	1045	NR_036614	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_18986	chr11	62314190	62314358	+	4.95488	NA	promoter-TSS (NM_001620)	promoter-TSS (NM_001620)	58	NM_024060	79026	Hs.502756	NM_001620	HPRD:14684	AHNAK	AHNAKRS	AHNAK nucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_62042	chr20	52209215	52209398	+	4.95463	NA	Intergenic	Intergenic	-9670	NM_006526	7764	Hs.155040	NM_006526	HPRD:04272	ZNF217	ZABC1	zinc finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_56667	chr2	162138902	162139017	+	4.95346	NA	Intergenic	Intergenic	-25827	NM_005805	10213	Hs.740477	NM_005805	HPRD:06208	PSMD14	PAD1|POH1|RPN11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding
19-PTNLD28-TUMOR_peak_22299	chr11	133907083	133907380	+	4.95177	NA	intron (NR_027276, intron 1 of 2)	CpG	5064	NR_027276	100128239	Hs.423734	NR_027276	ENSG00000204241	LOC100128239	-	uncharacterized LOC100128239	ncRNA
19-PTNLD28-TUMOR_peak_90079	chr6	152128641	152128800	+	4.95177	NA	promoter-TSS (NM_000125)	promoter-TSS (NM_000125)	-94	NM_000125	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_10086	chr1	218879334	218879422	+	4.95152	NA	Intergenic	Intergenic	263410	NR_125715	103611157	Hs.133379	NR_125715		TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_15455	chr10	105654518	105654707	+	4.95152	NA	intron (NM_024928, intron 7 of 9)	intron (NM_024928, intron 7 of 9)	23433	NM_024928	79991	Hs.62314	NM_024928		OBFC1	AAF-44|AAF44|RPA-32|STN1|bA541N10.2	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
19-PTNLD28-TUMOR_peak_17536	chr11	18995525	18995709	+	4.95152	NA	Intergenic	MIR|SINE|MIR	-39068	NM_147199	259249	Hs.711459	NM_147199	HPRD:06246	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS-related GPR, member X1	protein-coding
19-PTNLD28-TUMOR_peak_17230	chr11	12411960	12412061	+	4.95152	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	12984	NM_018222	55742	Hs.432914	NM_018222		PARVA	CH-ILKBP|MXRA2	parvin, alpha	protein-coding
19-PTNLD28-TUMOR_peak_73644	chr3	197107807	197108037	+	4.95152	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-81779	NM_001290983	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_73905	chr4	2432184	2432331	+	4.95152	NA	intron (NM_001193282, intron 2 of 15)	CpG	11585	NM_001193282	402160	Hs.443116	NM_001193282		CFAP99	-	cilia and flagella associated protein 99	protein-coding
19-PTNLD28-TUMOR_peak_5229	chr1	103240358	103240595	+	4.95029	NA	Intergenic	MER41A|LTR|ERV1	333576	NM_080630	1301	Hs.523446	NM_001854	HPRD:00375	COL11A1	CO11A1|COLL6|STL2	collagen, type XI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_89339	chr6	125204332	125204538	+	4.95029	NA	Intergenic	Intergenic	-79256	NM_001286398	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_73344	chr3	193903153	193903241	+	4.95029	NA	Intergenic	AmnSINE1|SINE|Deu	20899	NR_125404	100505920	Hs.436654	NR_125403		LOC100505920	-	uncharacterized LOC100505920	ncRNA
19-PTNLD28-TUMOR_peak_5647	chr1	113864079	113864167	+	4.95029	NA	Intergenic	LTR90B|LTR|LTR	-69352	NM_001142782	260425	Hs.486189	NM_020965	HPRD:11290	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_59058	chr2	237865090	237865367	+	4.95029	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-128856	NM_198189	10920	Hs.531713	NM_006710		COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_43204	chr17	70316980	70317086	+	4.95029	NA	Intergenic	Intergenic	199872	NM_000346	6662	Hs.647409	NM_000346	HPRD:06427	SOX9	CMD1|CMPD1|SRA1	SRY (sex determining region Y)-box 9	protein-coding
19-PTNLD28-TUMOR_peak_72907	chr3	185839931	185840036	+	4.95029	NA	Intergenic	Intergenic	-13082	NM_004454	2119	Hs.43697	NM_004454	HPRD:09035	ETV5	ERM	ets variant 5	protein-coding
19-PTNLD28-TUMOR_peak_78427	chr4	187622612	187622818	+	4.95029	NA	intron (NM_005245, intron 2 of 26)	intron (NM_005245, intron 2 of 26)	22272	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_1035	chr1	16309536	16309709	+	4.95029	NA	Intergenic	ERVL-E-int|LTR|ERVL	-6995	NM_001242884	7709	Hs.433764	NM_003443	HPRD:04968	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_22881	chr12	7911523	7911621	+	4.95029	NA	Intergenic	AluSx|SINE|Alu	-6240	NM_001145465	360030	Hs.558004	NM_001145465	ENSG00000205857	NANOGNB	-	NANOG neighbor homeobox	protein-coding
19-PTNLD28-TUMOR_peak_88876	chr6	99969217	99969447	+	4.95029	NA	intron (NM_001195131, intron 1 of 3)	intron (NM_001195131, intron 1 of 3)	462	NM_001195131	100130890	Hs.634506	NM_001195131		TSTD3	-	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_45454	chr18	43245524	43245635	+	4.95029	NA	intron (NM_007163, intron 11 of 19)	intron (NM_007163, intron 11 of 19)	50813	NM_007163	8170	Hs.710927	NM_007163	HPRD:03366	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 (urea transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_106109	chr9	129183953	129184119	+	4.95029	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	-11253	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
19-PTNLD28-TUMOR_peak_39026	chr16	82485798	82485930	+	4.95029	NA	Intergenic	Intergenic	-174535	NM_001220490	1012	Hs.654386	NM_001257	HPRD:03219	CDH13	CDHH|P105	cadherin 13	protein-coding
19-PTNLD28-TUMOR_peak_35252	chr15	91643123	91643494	+	4.95029	NA	promoter-TSS (NM_014848)	promoter-TSS (NM_014848)	126	NM_001167580	9899	Hs.21754	NM_014848	HPRD:11765	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding
19-PTNLD28-TUMOR_peak_109492	chrX	131999469	131999708	+	4.95029	NA	intron (NM_001077188, intron 3 of 5)	L1PA3|LINE|L1	95835	NM_001077188	90161	Hs.385956	NM_147175	HPRD:06590	HS6ST2	-	heparan sulfate 6-O-sulfotransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_101319	chr8	139341598	139341874	+	4.95029	NA	intron (NM_015912, intron 2 of 19)	intron (NM_015912, intron 2 of 19)	167329	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_17276	chr11	12915478	12915571	+	4.95029	NA	intron (NM_021961, intron 9 of 12)	intron (NM_021961, intron 9 of 12)	95571	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
19-PTNLD28-TUMOR_peak_41672	chr17	42021431	42021589	+	4.95029	NA	Intergenic	Intergenic	-1677	NM_002722	5539	Hs.558368	NM_002722	HPRD:01340	PPY	PNP	pancreatic polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_9073	chr1	197924271	197924435	+	4.95029	NA	Intergenic	Intergenic	37836	NM_020204	56956	Hs.442578	NM_020204	HPRD:07299	LHX9	-	LIM homeobox 9	protein-coding
19-PTNLD28-TUMOR_peak_85000	chr6	4688411	4688505	+	4.95029	NA	Intergenic	HAL1|LINE|L1	-17935	NR_026590	9425	Hs.269092	NM_004824	HPRD:04803	CDYL	CDYL1	chromodomain protein, Y-like	protein-coding
19-PTNLD28-TUMOR_peak_33859	chr15	62360775	62360894	+	4.95029	NA	exon (NM_207322, exon 2 of 2)	exon (NM_207322, exon 2 of 2)	1658	NM_207322	145741	Hs.202656	NM_207322	HPRD:14830	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_58873	chr2	233213745	233213966	+	4.95029	NA	Intergenic	Intergenic	-29493	NM_001632	250	Hs.284255	NM_001632	ENSG00000163283	ALPP	ALP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
19-PTNLD28-TUMOR_peak_33040	chr15	35283670	35283911	+	4.94971	NA	Intergenic	Intergenic	-3293	NM_014106	54989	Hs.744990	NM_014106	HPRD:16918	ZNF770	PRO1914	zinc finger protein 770	protein-coding
19-PTNLD28-TUMOR_peak_15189	chr10	101190127	101190216	+	4.94971	NA	intron (NM_002079, intron 1 of 8)	intron (NM_002079, intron 1 of 8)	359	NM_002079	2805	Hs.500756	NM_002079	HPRD:00687	GOT1	ASTQTL1|GIG18|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding
19-PTNLD28-TUMOR_peak_19434	chr11	66624198	66624316	+	4.94971	NA	promoter-TSS (NM_024036)	promoter-TSS (NM_024036)	-619	NM_024036	78999	Hs.209979	NM_024036	HPRD:14310	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_5831	chr1	117170067	117170180	+	4.94787	NA	intron (NM_001007237, intron 2 of 10)	intron (NM_001007237, intron 2 of 10)	39455	NM_001542	3321	Hs.171057	NM_001542	HPRD:04602	IGSF3	EWI-3|V8	immunoglobulin superfamily, member 3	protein-coding
19-PTNLD28-TUMOR_peak_58709	chr2	228337389	228337477	+	4.94787	NA	TTS (NR_049888)	TTS (NR_049888)	545	NM_001135189	3267	Hs.352962	NM_004504	HPRD:02918	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_9582	chr1	205038993	205039081	+	4.94787	NA	exon (NM_005076, exon 18 of 23)	exon (NM_005076, exon 18 of 23)	14551	NM_203376	388730	Hs.146928	NM_203376	HPRD:14205	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
19-PTNLD28-TUMOR_peak_9835	chr1	208132546	208132660	+	4.94787	NA	Intergenic	CpG	-47920	NM_001773	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
19-PTNLD28-TUMOR_peak_42020	chr17	46101535	46101671	+	4.94787	NA	Intergenic	CpG	13010	NR_029687	406943		NR_029687		MIR152	MIRN152	microRNA 152	ncRNA
19-PTNLD28-TUMOR_peak_65353	chr22	36902959	36903225	+	4.94787	NA	promoter-TSS (NM_024955)	promoter-TSS (NM_024955)	-2	NM_024955	80020	Hs.387601	NM_024955	HPRD:08666	FOXRED2	ERFAD	FAD-dependent oxidoreductase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_108393	chrX	53467637	53467963	+	4.94787	NA	Intergenic	Intergenic	-6477	NM_004493	3028	Hs.171280	NM_004493	HPRD:02223	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding
19-PTNLD28-TUMOR_peak_32354	chr14	105877442	105877673	+	4.94787	NA	intron (NM_001195082, intron 2 of 3)	CpG	8519	NR_125384	100507437	Hs.676548	NR_125384		LOC100507437	-	uncharacterized LOC100507437	ncRNA
19-PTNLD28-TUMOR_peak_30174	chr14	50328533	50328656	+	4.94633	NA	Intergenic	Intergenic	-9055	NM_004713	9147	Hs.655964	NM_004713	HPRD:08494	NEMF	NY-CO-1|SDCCAG1	nuclear export mediator factor	protein-coding
19-PTNLD28-TUMOR_peak_47113	chr19	9161208	9161355	+	4.94633	NA	Intergenic	Intergenic	-42640	NM_001004456	125963	Hs.553577	NM_001004456	HPRD:17689	OR1M1	OR19-5|OR19-6	olfactory receptor, family 1, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_14955	chr10	95198689	95198922	+	4.94633	NA	intron (NM_133337, intron 3 of 52)	intron (NM_133337, intron 3 of 52)	43269	NM_133337	26509	Hs.602086	NM_013451	HPRD:06857	MYOF	FER1L3	myoferlin	protein-coding
19-PTNLD28-TUMOR_peak_26264	chr12	110718329	110718480	+	4.94633	NA	promoter-TSS (NM_001681)	promoter-TSS (NM_001681)	-628	NM_001681	488	Hs.506759	NM_001681	HPRD:00161	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
19-PTNLD28-TUMOR_peak_71773	chr3	151986374	151986462	+	4.94122	NA	non-coding (NR_027038, exon 2 of 2)	non-coding (NR_027038, exon 2 of 2)	589	NM_207292	4154	Hs.201858	NM_021038	HPRD:07355	MBNL1	EXP|EXP35|EXP40|EXP42|MBNL	muscleblind-like splicing regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_45114	chr18	29523737	29523825	+	4.94107	NA	promoter-TSS (NM_014939)	promoter-TSS (NM_014939)	-690	NM_014939	22878	Hs.202001	NM_014939	HPRD:10019	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex 8	protein-coding
19-PTNLD28-TUMOR_peak_79721	chr5	43120565	43120666	+	4.94107	NA	promoter-TSS (NR_123719)	promoter-TSS (NR_123719)	-388	NR_123719	7690	Hs.535804	NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
19-PTNLD28-TUMOR_peak_163	chr1	1549810	1550120	+	4.93888	NA	promoter-TSS (NM_001170687)	promoter-TSS (NM_001170687)	-830	NM_001170686	142678	Hs.135805	NM_080875	HPRD:15905	MIB2	ZZANK1|ZZZ5	mindbomb E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_42053	chr17	46567820	46567977	+	4.93415	NA	Intergenic	Intergenic	40374	NM_002144	3211	Hs.99992	NM_002144		HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
19-PTNLD28-TUMOR_peak_19749	chr11	70464849	70464937	+	4.93415	NA	intron (NR_110766, intron 2 of 8)	intron (NR_110766, intron 2 of 8)	-12306	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_6922	chr1	153190284	153190583	+	4.93196	NA	intron (NM_001195571, intron 1 of 1)	intron (NM_001195571, intron 1 of 1)	373	NM_001195571	574414	Hs.135098	NM_001195571	ENSG00000203783	PRR9	-	proline rich 9	protein-coding
19-PTNLD28-TUMOR_peak_65588	chr22	39915627	39915746	+	4.93196	NA	promoter-TSS (NM_182810)	promoter-TSS (NM_182810)	-878	NM_001675	468	Hs.496487	NM_001675	HPRD:06817	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
19-PTNLD28-TUMOR_peak_43407	chr17	73258028	73258309	+	4.93159	NA	promoter-TSS (NM_014001)	promoter-TSS (NM_014001)	306	NM_001172704	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_19355	chr11	65837570	65837658	+	4.93159	NA	promoter-TSS (NM_018026)	promoter-TSS (NM_018026)	-210	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_49626	chr19	48167219	48167307	+	4.93110	NA	intron (NM_015711, intron 1 of 14)	intron (NM_015711, intron 1 of 14)	-49338	NM_014601	30846	Hs.744963	NM_014601	HPRD:10434	EHD2	PAST2	EH-domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_42684	chr17	58041351	58041699	+	4.93110	NA	promoter-TSS (NR_110815)	promoter-TSS (NR_110815)	592	NM_016125	51136	Hs.531701	NM_016125	HPRD:17925	RNFT1	-	ring finger protein, transmembrane 1	protein-coding
19-PTNLD28-TUMOR_peak_73384	chr3	194258212	194258324	+	4.93110	NA	Intergenic	Intergenic	-46729	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14701	chr10	87402123	87402373	+	4.92999	NA	intron (NM_017551, intron 13 of 15)	intron (NM_017551, intron 13 of 15)	64760	NR_038986	100507470	Hs.585483	NR_038986		GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83296	chr5	151120564	151120689	+	4.92292	NA	Intergenic	Intergenic	17584	NM_004045	475	Hs.125213	NM_004045	HPRD:03779	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
19-PTNLD28-TUMOR_peak_59382	chr20	345695	345813	+	4.92088	NA	Intergenic	Intergenic	-15519	NM_021158	57761	Hs.516826	NM_021158	HPRD:09836	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
19-PTNLD28-TUMOR_peak_95212	chr7	129304462	129304550	+	4.92088	NA	intron (NM_001293164, intron 2 of 9)	intron (NM_001293164, intron 2 of 9)	34587	NM_001040110	4899	Hs.654363	NM_005011	HPRD:02930	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_103248	chr9	43041465	43041553	+	4.92088	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-8197	NR_026759	100133036	Hs.584289	NR_026759	ENSG00000223839	FAM95B1	-	family with sequence similarity 95, member B1	ncRNA
19-PTNLD28-TUMOR_peak_25459	chr12	81471538	81471744	+	4.92088	NA	promoter-TSS (NM_024560)	promoter-TSS (NM_024560)	-168	NM_024560	79611	Hs.259559	NM_024560	HPRD:13385	ACSS3	-	acyl-CoA synthetase short-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_95065	chr7	127348930	127349019	+	4.92088	NA	intron (NM_014390, intron 9 of 23)	intron (NM_014390, intron 9 of 23)	56772	NM_014390	27044	Hs.122523	NM_014390	HPRD:03714	SND1	TDRD11|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49543	chr19	47393854	47393942	+	4.92088	NA	Intergenic	Intergenic	-28035	NM_004491	2909	Hs.509447	NM_004491	HPRD:05592	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
19-PTNLD28-TUMOR_peak_70046	chr3	119357795	119358027	+	4.92088	NA	Intergenic	Intergenic	21493	NM_022135	64091	Hs.534383	NM_022135	HPRD:16160	POPDC2	POP2	popeye domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_74790	chr4	25176482	25176603	+	4.92088	NA	intron (NR_037934, intron 1 of 1)	MLT1H|LTR|ERVL-MaLR	14248	NR_037934	285540	Hs.732278	NR_037934		SEPSECS-AS1	-	SEPSECS antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_42934	chr17	63035865	63036007	+	4.92088	NA	intron (NM_006572, intron 2 of 3)	L2c|LINE|L2	15956	NM_001282425	10672	Hs.515018	NM_006572	HPRD:05100	GNA13	G13	guanine nucleotide binding protein (G protein), alpha 13	protein-coding
19-PTNLD28-TUMOR_peak_108067	chrX	43513865	43513985	+	4.92088	NA	promoter-TSS (NM_001270458)	promoter-TSS (NM_001270458)	-230	NM_000240	4128	Hs.183109	NM_000240		MAOA	MAO-A	monoamine oxidase A	protein-coding
19-PTNLD28-TUMOR_peak_76711	chr4	115519725	115519841	+	4.92088	NA	5' UTR (NM_001128174, exon 1 of 6)	5' UTR (NM_001128174, exon 1 of 6)	172	NM_001128174	7368	Hs.144197	NM_003360	HPRD:03186	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
19-PTNLD28-TUMOR_peak_54258	chr2	96581050	96581204	+	4.92088	NA	Intergenic	Intergenic	-88398	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
19-PTNLD28-TUMOR_peak_98033	chr8	30359525	30359671	+	4.92088	NA	intron (NM_001008712, intron 4 of 6)	intron (NM_001008712, intron 4 of 6)	-116681	NR_046205	100128750	Hs.126813	NR_046205	ENSG00000254109	RBPMS-AS1	-	RBPMS antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54001	chr2	88754474	88754562	+	4.92088	NA	Intergenic	Intergenic	-2465	NM_001135649	344167	Hs.716722	NM_001135649		FOXI3	-	forkhead box I3	protein-coding
19-PTNLD28-TUMOR_peak_65609	chr22	40432765	40432884	+	4.92088	NA	TTS (NR_039988)	TTS (NR_039988)	4488	NR_039988	100130899	Hs.26192	NR_039988		LOC100130899	-	uncharacterized LOC100130899	ncRNA
19-PTNLD28-TUMOR_peak_37325	chr16	31141346	31141434	+	4.91410	NA	exon (NM_032188, exon 7 of 11)	exon (NM_032188, exon 7 of 11)	5761	NM_002773	5652	Hs.75799	NM_002773	HPRD:02895	PRSS8	CAP1|PROSTASIN	protease, serine, 8	protein-coding
19-PTNLD28-TUMOR_peak_53172	chr2	66103925	66104063	+	4.91402	NA	Intergenic	L2a|LINE|L2	-444338	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_15198	chr10	101441445	101441533	+	4.91402	NA	intron (NM_020354, intron 5 of 12)	L1MB1|LINE|L1	22226	NM_020354	57089	Hs.28326	NM_020354		ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
19-PTNLD28-TUMOR_peak_27495	chr13	24844838	24844950	+	4.91402	NA	promoter-TSS (NM_001286795)	promoter-TSS (NM_001286795)	69	NM_001286794	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_71299	chr3	140467713	140467839	+	4.91402	NA	Intergenic	Intergenic	70910	NM_152616	287015	Hs.343487	NM_152616	HPRD:15559	TRIM42	PPP1R40	tripartite motif containing 42	protein-coding
19-PTNLD28-TUMOR_peak_83289	chr5	151073712	151073847	+	4.91402	NA	Intergenic	Intergenic	-7164	NM_003118	6678	Hs.111779	NM_003118	HPRD:01631	SPARC	ON	secreted protein, acidic, cysteine-rich (osteonectin)	protein-coding
19-PTNLD28-TUMOR_peak_43306	chr17	72322232	72322349	+	4.91402	NA	promoter-TSS (NM_153209)	promoter-TSS (NM_153209)	-61	NM_153209	124602	Hs.372773	NM_153209	HPRD:08782	KIF19	KIF19A	kinesin family member 19	protein-coding
19-PTNLD28-TUMOR_peak_26435	chr12	113851528	113851616	+	4.91402	NA	Intergenic	Intergenic	-8644	NM_138432	113675	Hs.337594	NM_138432	HPRD:11542	SDSL	SDH 2|SDS-RS1|TDH|cSDH	serine dehydratase-like	protein-coding
19-PTNLD28-TUMOR_peak_11614	chr10	679232	679492	+	4.91402	NA	intron (NM_014974, intron 1 of 36)	CpG	8356	NR_049884	100847086		NR_049884		MIR5699	-	microRNA 5699	ncRNA
19-PTNLD28-TUMOR_peak_96499	chr7	152687148	152687236	+	4.91402	NA	Intergenic	LTR10D|LTR|ERV1	230358	NR_073000	57180	Hs.647117	NM_020445	HPRD:12489	ACTR3B	ARP11|ARP3BETA	ARP3 actin-related protein 3 homolog B (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_23305	chr12	19152812	19152909	+	4.91402	NA	Intergenic	Intergenic	-129766	NM_019012	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_94423	chr7	101053701	101053801	+	4.91402	NA	intron (NM_133457, intron 1 of 12)	PrimLTR79|LTR|ERV1	47650	NM_001278563	136227	Hs.654854	NM_133457	HPRD:16405	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen, type XXVI, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_6586	chr1	149287018	149287218	+	4.91402	NA	promoter-TSS (NR_111934)	promoter-TSS (NR_111934)	-12	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
19-PTNLD28-TUMOR_peak_41645	chr17	41677850	41677961	+	4.91402	NA	Intergenic	Intergenic	-54105	NM_001079675	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_58372	chr2	218767661	218767873	+	4.91402	NA	intron (NM_022648, intron 4 of 32)	intron (NM_022648, intron 4 of 32)	-2416	NR_106867	102465485		NR_106867		MIR6809	hsa-mir-6809	microRNA 6809	ncRNA
19-PTNLD28-TUMOR_peak_28570	chr13	79232724	79233055	+	4.91402	NA	intron (NM_024546, intron 1 of 5)	CpG	425	NM_024546	79596	Hs.567576	NM_024546	HPRD:12619	RNF219	C13orf7	ring finger protein 219	protein-coding
19-PTNLD28-TUMOR_peak_77154	chr4	139819024	139819119	+	4.91402	NA	Intergenic	Intergenic	-117842	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_22443	chr12	1762119	1762208	+	4.91402	NA	Intergenic	Intergenic	7383	NR_037422	100500816		NR_037422	miRBase:MI0016049	MIR3649	-	microRNA 3649	ncRNA
19-PTNLD28-TUMOR_peak_59972	chr20	17486065	17486153	+	4.91402	NA	intron (NM_001278607, intron 5 of 7)	intron (NM_001278607, intron 5 of 7)	25905	NM_001195	631	Hs.129702	NM_001195	HPRD:04494	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1, filensin	protein-coding
19-PTNLD28-TUMOR_peak_100075	chr8	109930805	109930926	+	4.91402	NA	Intergenic	Intergenic	-131095	NM_153015	157753	Hs.99439	NM_153015		TMEM74	NET36	transmembrane protein 74	protein-coding
19-PTNLD28-TUMOR_peak_80371	chr5	67185524	67185716	+	4.91402	NA	Intergenic	L1PA2|LINE|L1	-300084	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_101531	chr8	143407479	143407612	+	4.91402	NA	intron (NM_001291931, intron 4 of 10)	CpG	77065	NM_145003	203062	Hs.370931	NM_145003	HPRD:08708	TSNARE1	-	t-SNARE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_43664	chr17	75491076	75491264	+	4.91402	NA	intron (NM_001293697, intron 8 of 9)	intron (NM_001293697, intron 8 of 9)	19845	NM_001113495	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_100059	chr8	109095824	109095912	+	4.91402	NA	promoter-TSS (NM_178565)	promoter-TSS (NM_178565)	45	NM_178565	340419	Hs.444834	NM_178565	HPRD:17536	RSPO2	CRISTIN2	R-spondin 2	protein-coding
19-PTNLD28-TUMOR_peak_45222	chr18	33530489	33530577	+	4.91402	NA	Intergenic	Intergenic	-22055	NM_001201475	83608	Hs.37883	NM_031446	HPRD:12688	C18orf21	HsT3108|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
19-PTNLD28-TUMOR_peak_19356	chr11	65837766	65837899	+	4.91287	NA	promoter-TSS (NM_018026)	promoter-TSS (NM_018026)	8	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_48149	chr19	19475772	19475975	+	4.91287	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-20769	NM_017660	54815	Hs.118964	NM_017660	HPRD:11741	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_50692	chr1_gl000192_random	510640	510806	+	4.91206	NA	Intergenic	Intergenic	-42040	NR_120328	102724558	Hs.712738	NR_120328		LOC102724558	-	uncharacterized LOC102724558	ncRNA
19-PTNLD28-TUMOR_peak_96874	chr8	1777527	1777700	+	4.91108	NA	intron (NM_014629, intron 1 of 28)	intron (NM_014629, intron 1 of 28)	5464	NM_014629	9639	Hs.98594	NM_014629	HPRD:09735	ARHGEF10	GEF10	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
19-PTNLD28-TUMOR_peak_38217	chr16	66398964	66399052	+	4.91108	NA	Intergenic	L2|LINE|L2	-1517	NM_001795	1003	Hs.76206	NM_001795	HPRD:03075	CDH5	7B4|CD144	cadherin 5, type 2 (vascular endothelium)	protein-coding
19-PTNLD28-TUMOR_peak_57072	chr2	175547497	175547585	+	4.91108	NA	promoter-TSS (NM_001077269)	promoter-TSS (NM_001077269)	86	NM_001077269	7456	Hs.128067	NM_003387	HPRD:03835	WIPF1	PRPL-2|WASPIP|WIP	WAS/WASL interacting protein family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_3344	chr1	48275015	48275242	+	4.91108	NA	intron (NM_001194986, intron 2 of 6)	intron (NM_001194986, intron 2 of 6)	187434	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_27492	chr13	24794328	24794447	+	4.91108	NA	intron (NM_153023, intron 1 of 11)	intron (NM_153023, intron 1 of 11)	34190	NR_046531	100874231	Hs.577998	NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_20858	chr11	102322421	102322730	+	4.91108	NA	intron (NM_052932, intron 1 of 4)	CpG	1200	NM_052932	114908	Hs.503709	NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
19-PTNLD28-TUMOR_peak_59943	chr20	16555074	16555168	+	4.91108	NA	Intergenic	Intergenic	-1042	NM_001199866	55614	Hs.101774	NM_024704	HPRD:10731	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
19-PTNLD28-TUMOR_peak_89061	chr6	110008769	110008857	+	4.91046	NA	intron (NM_001145128, intron 1 of 40)	MLT1E1A|LTR|ERVL-MaLR	3602	NM_145025	221264	Hs.205144	NM_145025	HPRD:12871	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|dJ70A9.1	adenylate kinase 9	protein-coding
19-PTNLD28-TUMOR_peak_40910	chr17	29035837	29035945	+	4.91046	NA	promoter-TSS (NR_024187)	promoter-TSS (NR_024187)	-735	NR_024187	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	suppressor of zeste 12 homolog pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_26930	chr12	124247013	124247274	+	4.91046	NA	TTS (NM_012463)	TTS (NM_012463)	101	NM_207437	196385	Hs.622654	NM_207437	HPRD:13473	DNAH10	-	dynein, axonemal, heavy chain 10	protein-coding
19-PTNLD28-TUMOR_peak_66559	chr3	10813331	10813473	+	4.91046	NA	Intergenic	Intergenic	-7525	NR_027102	285370	Hs.157613	NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
19-PTNLD28-TUMOR_peak_44065	chr17	80182202	80182493	+	4.91046	NA	Intergenic	Intergenic	-3935	NM_001042422	9123	Hs.500761	NM_004207	HPRD:04854	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 (monocarboxylate transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_62768	chr21	14367662	14367750	+	4.91046	NA	Intergenic	ALR/Alpha|Satellite|centr	-42781	NR_026916	149992	Hs.558645	NM_153773		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_56909	chr2	171571779	171571974	+	4.91046	NA	promoter-TSS (NR_027433)	promoter-TSS (NR_027433)	19	NM_001003845	389058	Hs.368802	NM_001003845	HPRD:18088	SP5	-	Sp5 transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_61736	chr20	48555249	48555337	+	4.90942	NA	intron (NM_018683, intron 1 of 5)	intron (NM_018683, intron 1 of 5)	2379	NM_018683	55905	Hs.144949	NM_018683	HPRD:10329	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
19-PTNLD28-TUMOR_peak_100755	chr8	127569034	127569230	+	4.90292	NA	exon (NM_174911, exon 2 of 2)	exon (NM_174911, exon 2 of 2)	1579	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_72998	chr3	186947535	186947624	+	4.89731	NA	exon (NM_001879, exon 11 of 16)	exon (NM_001879, exon 11 of 16)	-22162	NR_110052	101929106	Hs.640145	NR_110052	ENSG00000198491	LOC101929106	-	uncharacterized LOC101929106	ncRNA
19-PTNLD28-TUMOR_peak_7110	chr1	154806174	154806283	+	4.89731	NA	intron (NM_002249, intron 1 of 7)	intron (NM_002249, intron 1 of 7)	26110	NM_170782	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_52097	chr2	36582881	36583063	+	4.89699	NA	promoter-TSS (NM_016441)	promoter-TSS (NM_016441)	-259	NR_037631	100288911	Hs.432924	NR_037631		LOC100288911	-	uncharacterized LOC100288911	ncRNA
19-PTNLD28-TUMOR_peak_19001	chr11	62370206	62370353	+	4.89699	NA	promoter-TSS (NM_004739)	promoter-TSS (NM_004739)	-967	NM_004739	9219	Hs.173043	NM_004739	HPRD:07233	MTA2	MTA1L1|PID	metastasis associated 1 family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_70957	chr3	133776345	133776433	+	4.89456	NA	Intergenic	Intergenic	-27469	NM_005630	6578	Hs.518270	NM_005630	HPRD:03269	SLCO2A1	MATR1|OATP2A1|PGT|PHOAR2|SLC21A2	solute carrier organic anion transporter family, member 2A1	protein-coding
19-PTNLD28-TUMOR_peak_101243	chr8	136271945	136272033	+	4.89456	NA	intron (NR_120396, intron 1 of 4)	L1PA2|LINE|L1	25615	NR_120396	286094	Hs.440978	NR_026706	ENSG00000254083	LOC286094	-	uncharacterized LOC286094	ncRNA
19-PTNLD28-TUMOR_peak_66830	chr3	14493735	14493866	+	4.89426	NA	intron (NR_103507, intron 5 of 13)	MIRb|SINE|MIR	49724	NM_001134368	6533	Hs.529488	NM_003043	HPRD:01734	SLC6A6	TAUT	solute carrier family 6 (neurotransmitter transporter), member 6	protein-coding
19-PTNLD28-TUMOR_peak_6154	chr1	143953704	143953793	+	4.89382	NA	Intergenic	Intergenic	-40588	NM_001287385	554282		NM_001287385		FAM72C	-	family with sequence similarity 72, member C	protein-coding
19-PTNLD28-TUMOR_peak_21738	chr11	122531944	122532078	+	4.89382	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	5613	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_5307	chr1	108804809	108804952	+	4.89067	NA	Intergenic	L1PA10|LINE|L1	-18177	NM_001143989	148545	Hs.511849	NM_152488	HPRD:08144	NBPF4	-	neuroblastoma breakpoint family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_69619	chr3	107843382	107843582	+	4.89067	NA	promoter-TSS (NR_110030)	promoter-TSS (NR_110030)	-429	NR_110030	101929623	Hs.570653	NR_110028		LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
19-PTNLD28-TUMOR_peak_71470	chr3	143831482	143831575	+	4.89067	NA	Intergenic	Intergenic	139361	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_48659	chr19	35659896	35659984	+	4.89067	NA	intron (NR_028406, intron 7 of 7)	AluSz|SINE|Alu	14095	NM_001164605	53827	Hs.333418	NM_014164	HPRD:09448	FXYD5	DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
19-PTNLD28-TUMOR_peak_15844	chr10	118647848	118648016	+	4.89067	NA	intron (NM_018330, intron 14 of 14)	MLT2F|LTR|ERVL	38909	NM_001242699	387712	Hs.693248	NM_001242699	ENSG00000188316	ENO4	C10orf134	enolase family member 4	protein-coding
19-PTNLD28-TUMOR_peak_49500	chr19	47016868	47016956	+	4.89067	NA	intron (NM_001205281, intron 3 of 3)	CpG	-17743	NM_020709	57469	Hs.7193	NM_020709	ENSG00000204851	PNMAL2	-	paraneoplastic Ma antigen family-like 2	protein-coding
19-PTNLD28-TUMOR_peak_47802	chr19	16373522	16373644	+	4.89067	NA	Intergenic	L2a|LINE|L2	-62068	NM_016270	10365	Hs.744182	NM_016270	HPRD:03602	KLF2	LKLF	Kruppel-like factor 2	protein-coding
19-PTNLD28-TUMOR_peak_106703	chr9	138624889	138624987	+	4.89067	NA	intron (NM_020822, intron 2 of 30)	intron (NM_020822, intron 2 of 30)	30907	NM_020822	57582	Hs.104950	NM_020822	ENSG00000107147	KCNT1	EIEE14|ENFL5|KCa4.1|SLACK|bA100C15.2	potassium channel, subfamily T, member 1	protein-coding
19-PTNLD28-TUMOR_peak_88932	chr6	105774793	105774912	+	4.89067	NA	intron (NM_002726, intron 9 of 14)	intron (NM_002726, intron 9 of 14)	76147	NM_002726	5550	Hs.436564	NM_002726	HPRD:02673	PREP	PE|PEP	prolyl endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_2320	chr1	35274128	35274290	+	4.89067	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	15610	NM_002060	2701	Hs.296310	NM_002060	HPRD:08509	GJA4	CX37	gap junction protein, alpha 4, 37kDa	protein-coding
19-PTNLD28-TUMOR_peak_271	chr1	3297209	3297344	+	4.89067	NA	intron (NM_022114, intron 3 of 16)	L3|LINE|CR1	-73871	NM_014448	27237	Hs.87435	NM_014448	HPRD:12478	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
19-PTNLD28-TUMOR_peak_34531	chr15	75322405	75322515	+	4.88948	NA	intron (NM_001301103, intron 2 of 3)	intron (NM_001301103, intron 2 of 3)	6564	NM_001301103	60490	Hs.458922	NM_021823	HPRD:14377	PPCDC	PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_106624	chr9	136933698	136933800	+	4.88948	NA	promoter-TSS (NM_007371)	promoter-TSS (NM_007371)	-608	NM_007371	8019	Hs.522472	NM_007371	HPRD:03327	BRD3	ORFX|RING3L	bromodomain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_18796	chr11	60598331	60598480	+	4.88948	NA	Intergenic	Intergenic	-11024	NM_024098	79080	Hs.4253	NM_024098	HPRD:08322	CCDC86	-	coiled-coil domain containing 86	protein-coding
19-PTNLD28-TUMOR_peak_105930	chr9	124855151	124855255	+	4.88778	NA	exon (NM_194252, exon 1 of 4)	exon (NM_194252, exon 1 of 4)	682	NM_001139442	158135	Hs.438937	NM_194252	HPRD:10047	TTLL11	C9orf20|bA244O19.1	tubulin tyrosine ligase-like family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_24026	chr12	48179747	48179877	+	4.88778	NA	intron (NM_001098416, intron 21 of 24)	intron (NM_001098416, intron 21 of 24)	12845	NM_017842	55652	Hs.438867	NM_017842	HPRD:07916	SLC48A1	HRG-1|HRG1|hHRG-1	solute carrier family 48 (heme transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_73925	chr4	2790246	2790572	+	4.88778	NA	Intergenic	Intergenic	-4341	NM_001122681	6452	Hs.167679	NM_003023	HPRD:03657	SH3BP2	3BP-2|3BP2|CRBM|CRPM	SH3-domain binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_73189	chr3	190103934	190104065	+	4.88418	NA	Intergenic	Intergenic	-1662	NM_006580	10686	Hs.251391	NM_006580	HPRD:04906	CLDN16	HOMG3|PCLN1	claudin 16	protein-coding
19-PTNLD28-TUMOR_peak_24300	chr12	52467937	52468099	+	4.88418	NA	intron (NM_001098673, intron 3 of 3)	intron (NM_001098673, intron 3 of 3)	4260	NM_021934	60673	Hs.9911	NM_021934	HPRD:08566	ATG101	C12orf44	autophagy related 101	protein-coding
19-PTNLD28-TUMOR_peak_6585	chr1	149286776	149286901	+	4.88214	NA	promoter-TSS (NR_111934)	promoter-TSS (NR_111934)	-292	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA
19-PTNLD28-TUMOR_peak_47204	chr19	10406101	10406395	+	4.88214	NA	exon (NM_003259, exon 10 of 11)	exon (NM_003259, exon 10 of 11)	5593	NM_003259	7087	Hs.465862	NM_003259	HPRD:03509	ICAM5	TLCN|TLN	intercellular adhesion molecule 5, telencephalin	protein-coding
19-PTNLD28-TUMOR_peak_20026	chr11	74460191	74460565	+	4.88214	NA	exon (NM_001098638, exon 1 of 6)	exon (NM_001098638, exon 1 of 6)	465	NM_001098638	254225	Hs.370145	NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
19-PTNLD28-TUMOR_peak_103614	chr9	70166629	70166789	+	4.88019	NA	Intergenic	MER54A|LTR|ERVL	12106	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
19-PTNLD28-TUMOR_peak_19802	chr11	71421834	71421922	+	4.88019	NA	Intergenic	HERVS71-int|LTR|ERV1	-76679	NM_018172	55199	Hs.567527	NM_018172	HPRD:13337	FAM86C1	FAM86C	family with sequence similarity 86, member C1	protein-coding
19-PTNLD28-TUMOR_peak_46491	chr19	507792	507880	+	4.87954	NA	exon (NM_033513, exon 1 of 2)	exon (NM_033513, exon 1 of 2)	339	NM_033513	91978	Hs.369613	NM_033513	HPRD:12701	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_100247	chr8	118627725	118627819	+	4.87834	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	94820	NM_080651	90390	Hs.492612	NM_080651	HPRD:11631	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
19-PTNLD28-TUMOR_peak_99251	chr8	75896782	75897104	+	4.87834	NA	5' UTR (NM_031461, exon 1 of 15)	5' UTR (NM_031461, exon 1 of 15)	235	NM_031461	83690	Hs.436542	NM_031461	HPRD:16756	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_62558	chr20	61733737	61733825	+	4.87834	NA	promoter-TSS (NR_003245)	promoter-TSS (NR_003245)	-110	NR_003245	768097	Hs.635159	NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_73271	chr3	192462714	192463042	+	4.87834	NA	Intergenic	L1PA2|LINE|L1	-17490	NM_004113	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_89793	chr6	144008302	144008395	+	4.87834	NA	intron (NM_001100165, intron 1 of 11)	intron (NM_001100165, intron 1 of 11)	9246	NM_001100165	9749	Hs.102471	NM_014721	HPRD:16378	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_98718	chr8	52433243	52433369	+	4.87834	NA	intron (NM_144651, intron 4 of 22)	L1MCa|LINE|L1	288699	NM_144651	137902	Hs.444882	NM_144651	HPRD:08693	PXDNL	PMR1|PRM1|VPO2	peroxidasin homolog (Drosophila)-like	protein-coding
19-PTNLD28-TUMOR_peak_62307	chr20	56245571	56245704	+	4.87834	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	20043	NM_001255976	56937	Hs.517155	NM_020182	HPRD:09415	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
19-PTNLD28-TUMOR_peak_6874	chr1	152319756	152319866	+	4.87834	NA	intron (NR_103779, intron 2 of 2)	intron (NR_103779, intron 2 of 2)	10267	NR_103779	339400	Hs.23783	NR_103778	ENSG00000237975	FLG-AS1	-	FLG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97872	chr8	27839605	27839842	+	4.87834	NA	intron (NM_173833, intron 2 of 8)	intron (NM_173833, intron 2 of 8)	10646	NM_173833	286133	Hs.591833	NM_173833	HPRD:11356	SCARA5	NET33|Tesr	scavenger receptor class A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_33746	chr15	58798325	58798574	+	4.87834	NA	intron (NM_000236, intron 1 of 8)	intron (NM_000236, intron 1 of 8)	-7515	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_62807	chr21	16403793	16404069	+	4.87834	NA	intron (NM_003489, intron 2 of 3)	intron (NM_003489, intron 2 of 3)	33195	NM_003489	8204	Hs.155017	NM_003489	HPRD:03927	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_104003	chr9	80263468	80263656	+	4.87834	NA	promoter-TSS (NM_004297)	promoter-TSS (NM_004297)	-330	NM_004297	9630	Hs.657795	NM_004297	HPRD:05095	GNA14	-	guanine nucleotide binding protein (G protein), alpha 14	protein-coding
19-PTNLD28-TUMOR_peak_89634	chr6	138028900	138028988	+	4.87834	NA	Intergenic	Intergenic	31230	NR_121618	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_7895	chr1	165338558	165338727	+	4.87834	NA	Intergenic	Intergenic	-12690	NM_177398	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_50043	chr19	51530347	51530644	+	4.87560	NA	promoter-TSS (NM_001136032)	promoter-TSS (NM_001136032)	390	NM_144947	11012	Hs.57771	NM_006853	HPRD:05114	KLK11	PRSS20|TLSP	kallikrein-related peptidase 11	protein-coding
19-PTNLD28-TUMOR_peak_11587	chr10	181913	182132	+	4.87516	NA	intron (NM_001202464, intron 1 of 13)	CpG	598	NM_001202464	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_6210	chr1	144572441	144572640	+	4.87120	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	40179	NR_003242	767846	Hs.657186	NR_003242		PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_86430	chr6	30028536	30028633	+	4.86863	NA	promoter-TSS (NM_014596)	promoter-TSS (NM_014596)	377	NR_026751	80862	Hs.653168	NR_026751	ENSG00000204623	ZNRD1-AS1	C6orf12|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1AS	ZNRD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_42499	chr17	55681926	55682240	+	4.86863	NA	intron (NR_110807, intron 2 of 2)	intron (NR_110807, intron 2 of 2)	3690	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
19-PTNLD28-TUMOR_peak_22647	chr12	5290750	5290917	+	4.86863	NA	Intergenic	Intergenic	58445	NR_120476	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA
19-PTNLD28-TUMOR_peak_64088	chr21	47362766	47362860	+	4.86858	NA	TTS (NM_001130141)	TTS (NM_001130141)	-30071	NR_109931	101928796	Hs.130919	NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
19-PTNLD28-TUMOR_peak_3910	chr1	61034968	61035099	+	4.86858	NA	Intergenic	L2c|LINE|L2	256223	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
19-PTNLD28-TUMOR_peak_84516	chr5	179544248	179544348	+	4.86858	NA	intron (NM_175062, intron 10 of 13)	intron (NM_175062, intron 10 of 13)	-45180	NM_018434	55819	Hs.484363	NM_018434	HPRD:11504	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
19-PTNLD28-TUMOR_peak_64404	chr22	20009050	20009173	+	4.86636	NA	intron (NM_001283199, intron 1 of 6)	intron (NM_001283199, intron 1 of 6)	519	NM_001283148	128989	Hs.474233	NM_152906	HPRD:13229	TANGO2	C22orf25	transport and golgi organization 2 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_95776	chr7	139431208	139431326	+	4.86636	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	46426	NM_022740	28996	Hs.731417	NM_022740	HPRD:06039	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_101746	chr8	145539746	145539834	+	4.86636	NA	3' UTR (NM_012079, exon 17 of 17)	3' UTR (NM_012079, exon 17 of 17)	1188	NR_106907	102465511		NR_106907		MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
19-PTNLD28-TUMOR_peak_70990	chr3	134092130	134092229	+	4.86631	NA	intron (NM_001278683, intron 1 of 9)	intron (NM_001278683, intron 1 of 9)	1248	NM_001278685	51421	Hs.426312	NM_016201	HPRD:16485	AMOTL2	LCCP	angiomotin like 2	protein-coding
19-PTNLD28-TUMOR_peak_5736	chr1	115974904	115974999	+	4.86467	NA	Intergenic	Intergenic	-94094	NM_002506	4803	Hs.2561	NM_002506	HPRD:08874	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_32338	chr14	105663636	105663738	+	4.86467	NA	Intergenic	Intergenic	-16027	NM_177533	256281	Hs.526432	NM_177533	HPRD:14847	NUDT14	UGPP|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding
19-PTNLD28-TUMOR_peak_90312	chr6	159240339	159240539	+	4.86319	NA	promoter-TSS (NM_001111077)	promoter-TSS (NM_001111077)	17	NM_001111077	7430	Hs.487027	NM_003379	HPRD:00475	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
19-PTNLD28-TUMOR_peak_106422	chr9	132901129	132901389	+	4.86069	NA	3' UTR (NM_001136558, exon 19 of 19)	3' UTR (NM_001136558, exon 19 of 19)	-33598	NM_014286	23413	Hs.642946	NM_014286	HPRD:04500	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
19-PTNLD28-TUMOR_peak_72513	chr3	177337340	177337428	+	4.86069	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	177675	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
19-PTNLD28-TUMOR_peak_1889	chr1	29182232	29182323	+	4.86069	NA	intron (NM_000911, intron 1 of 2)	intron (NM_000911, intron 1 of 2)	-31326	NM_001166005	2035	Hs.175437	NM_004437	HPRD:00558	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19-PTNLD28-TUMOR_peak_32739	chr15	29210915	29211258	+	4.86069	NA	Intergenic	AluY|SINE|Alu	-2754	NM_005503	321	Hs.618112	NM_005503	HPRD:04090	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_3135	chr1	45369088	45369202	+	4.86069	NA	intron (NM_020365, intron 5 of 11)	intron (NM_020365, intron 5 of 11)	-60529	NM_003738	8643	Hs.591497	NM_003738	HPRD:04722	PTCH2	PTC2	patched 2	protein-coding
19-PTNLD28-TUMOR_peak_92182	chr7	42909154	42909278	+	4.86069	NA	Intergenic	Intergenic	42473	NM_001099858	79020	Hs.698120	NM_024054	HPRD:09861	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
19-PTNLD28-TUMOR_peak_66912	chr3	15553775	15553919	+	4.86069	NA	intron (NM_005677, intron 1 of 16)	intron (NM_005677, intron 1 of 16)	9411	NM_005677	8292	Hs.146735	NM_005677	HPRD:04328	COLQ	EAD	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_5510	chr1	111326049	111326137	+	4.86069	NA	Intergenic	Intergenic	-87728	NM_001040033	963	Hs.443057	NM_000560	HPRD:01054	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
19-PTNLD28-TUMOR_peak_93619	chr7	79553370	79553516	+	4.86069	NA	Intergenic	Intergenic	152871	NR_031667	100313772		NR_031667	miRBase:MI0006400	MIR548M	MIRN548M	microRNA 548m	ncRNA
19-PTNLD28-TUMOR_peak_98282	chr8	38614852	38615152	+	4.86069	NA	intron (NM_001146216, intron 1 of 12)	CpG	29298	NM_001146216	6867	Hs.279245	NM_006283	HPRD:10391	TACC1	Ga55	transforming, acidic coiled-coil containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61850	chr20	49312189	49312321	+	4.86069	NA	Intergenic	MER113|DNA|hAT-Charlie	-4188	NM_001290268	140876	Hs.372578	NM_080829	HPRD:12757	FAM65C	C20orf175|C20orf176|dJ530I15.2|dJ530I15.3	family with sequence similarity 65, member C	protein-coding
19-PTNLD28-TUMOR_peak_91452	chr7	19157205	19157381	+	4.86069	NA	promoter-TSS (NM_000474)	promoter-TSS (NM_000474)	2	NM_000474	7291	Hs.66744	NM_000474	HPRD:03374	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_103681	chr9	71788817	71789147	+	4.85821	NA	promoter-TSS (NM_001170630)	promoter-TSS (NM_001170630)	11	NM_001170630	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_103946	chr9	78938594	78938689	+	4.85650	NA	intron (NM_001190482, intron 31 of 36)	intron (NM_001190482, intron 31 of 36)	70803	NM_018339	55312	Hs.37558	NM_018339	HPRD:17969	RFK	RIFK	riboflavin kinase	protein-coding
19-PTNLD28-TUMOR_peak_44178	chr17_gl000205_random	110801	110889	+	4.85650	NA	Intergenic	GSATII|Satellite|centr	-5778	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_50683	chr1_gl000192_random	474987	475087	+	4.85650	NA	Intergenic	LTR51|LTR|ERV1	-6354	NR_120328	102724558	Hs.712738	NR_120328		LOC102724558	-	uncharacterized LOC102724558	ncRNA
19-PTNLD28-TUMOR_peak_81583	chr5	112394703	112394820	+	4.85650	NA	intron (NM_002387, intron 12 of 16)	intron (NM_002387, intron 12 of 16)	82354	NM_001242377	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_60729	chr20	34205500	34205770	+	4.85228	NA	intron (NM_003116, intron 3 of 11)	intron (NM_003116, intron 3 of 11)	1826	NM_003116	6676	Hs.123159	NM_003116	HPRD:04330	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
19-PTNLD28-TUMOR_peak_101608	chr8	144363394	144363555	+	4.85112	NA	intron (NR_120683, intron 1 of 1)	LTR50|LTR|ERVL	396	NR_120682	100507316	Hs.446671	NR_120682		LOC100507316	-	uncharacterized LOC100507316	ncRNA
19-PTNLD28-TUMOR_peak_80890	chr5	78533347	78533495	+	4.85047	NA	exon (NM_152405, exon 1 of 11)	exon (NM_152405, exon 1 of 11)	1496	NM_152405	133746	Hs.482605	NM_152405	HPRD:05045	JMY	WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
19-PTNLD28-TUMOR_peak_53793	chr2	85665475	85665627	+	4.84817	NA	Intergenic	Intergenic	3633	NM_198482	284948	Hs.209542	NM_198482	HPRD:14156	SH2D6	-	SH2 domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_71464	chr3	143691637	143691754	+	4.84817	NA	promoter-TSS (NM_001134470)	promoter-TSS (NM_001134470)	-472	NM_001134470	205428	Hs.288954	NM_173552	HPRD:14559	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding
19-PTNLD28-TUMOR_peak_1405	chr1	22743210	22743298	+	4.84804	NA	Intergenic	Intergenic	-35090	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_21308	chr11	114310534	114310797	+	4.84590	NA	intron (NM_015523, intron 1 of 6)	intron (NM_015523, intron 1 of 6)	557	NM_015523	25996	Hs.677190	NM_015523	HPRD:06192	REXO2	REX2|RFN|SFN	RNA exonuclease 2	protein-coding
19-PTNLD28-TUMOR_peak_90293	chr6	158981569	158981703	+	4.84284	NA	intron (NM_020823, intron 1 of 16)	CpG	24168	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
19-PTNLD28-TUMOR_peak_38582	chr16	70956086	70956205	+	4.84284	NA	intron (NM_001270974, intron 45 of 85)	intron (NM_001270974, intron 45 of 85)	-121084	NM_018052	55697	Hs.445061	NM_018052	HPRD:07660	VAC14	ArPIKfyve|TAX1BP2|TRX	Vac14 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_72045	chr3	159334157	159334250	+	4.84284	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	152198	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_73954	chr4	3184882	3185055	+	4.84284	NA	intron (NM_002111, intron 37 of 66)	intron (NM_002111, intron 37 of 66)	-65799	NM_001042690	345222	Hs.442291	NM_001012982		MSANTD1	C4orf44	Myb/SANT-like DNA-binding domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_41223	chr17	36478216	36478304	+	4.84284	NA	intron (NM_032351, intron 7 of 7)	intron (NM_032351, intron 7 of 7)	21433	NM_001004334	440435	Hs.462915	NM_001004334	HPRD:13602	GPR179	CSNB1E|GPR158L|GPR158L1	G protein-coupled receptor 179	protein-coding
19-PTNLD28-TUMOR_peak_82003	chr5	127873453	127873619	+	4.84284	NA	5' UTR (NM_001999, exon 1 of 65)	5' UTR (NM_001999, exon 1 of 65)	199	NM_001999	2201	Hs.519294	NM_001999	HPRD:00416	FBN2	CCA|DA9	fibrillin 2	protein-coding
19-PTNLD28-TUMOR_peak_105988	chr9	126089997	126090152	+	4.84284	NA	Intergenic	Intergenic	-28372	NM_173689	286204	Hs.568340	NM_173689	HPRD:13093	CRB2	-	crumbs family member 2	protein-coding
19-PTNLD28-TUMOR_peak_11921	chr10	7571740	7571828	+	4.84284	NA	Intergenic	MER1B|DNA|hAT-Charlie	89852	NM_032817	80760	Hs.498586	NM_030569	HPRD:07865	ITIH5	ITI-HC5	inter-alpha-trypsin inhibitor heavy chain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_38017	chr16	57202056	57202144	+	4.84284	NA	intron (NM_024946, intron 4 of 6)	intron (NM_024946, intron 4 of 6)	17876	NM_024946	80011	Hs.396740	NM_024946	HPRD:11389	FAM192A	C16orf94|CDA018|NIP30	family with sequence similarity 192, member A	protein-coding
19-PTNLD28-TUMOR_peak_46145	chr18	62388531	62388654	+	4.84284	NA	Intergenic	LTR1D|LTR|ERV1	-461302	NR_033983	400654	Hs.434235	NR_033983	ENSG00000266952	LOC400654	-	uncharacterized LOC400654	ncRNA
19-PTNLD28-TUMOR_peak_93542	chr7	76880672	76880774	+	4.84284	NA	intron (NM_020879, intron 4 of 18)	L1MCa|LINE|L1	-51573	NM_006682	10875	Hs.520989	NM_006682	HPRD:16098	FGL2	T49|pT49	fibrinogen-like 2	protein-coding
19-PTNLD28-TUMOR_peak_38393	chr16	68016140	68016437	+	4.84284	NA	Intergenic	LTR12C|LTR|ERV1	-1836	NM_001129758	64180	Hs.302028	NM_022357	HPRD:07012	DPEP3	MBD3	dipeptidase 3	protein-coding
19-PTNLD28-TUMOR_peak_39659	chr17	1915126	1915360	+	4.84284	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	12935	NM_178568	146760	Hs.22917	NM_178568	HPRD:11523	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_88927	chr6	105584659	105584777	+	4.84284	NA	promoter-TSS (NM_007073)	promoter-TSS (NM_007073)	-175	NM_007073	11149	Hs.221660	NM_007073	HPRD:06842	BVES	HBVES|POP1|POPDC1	blood vessel epicardial substance	protein-coding
19-PTNLD28-TUMOR_peak_58305	chr2	217413852	217414022	+	4.84284	NA	Intergenic	Intergenic	50417	NM_000998	6168	Hs.433701	NM_000998		RPL37A	L37A	ribosomal protein L37a	protein-coding
19-PTNLD28-TUMOR_peak_71063	chr3	135890269	135890357	+	4.84284	NA	intron (NM_018133, intron 1 of 1)	LTR16A|LTR|ERVL	22997	NM_001145417	55167	Hs.18631	NM_018133	HPRD:08550	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_19057	chr11	63298191	63298293	+	4.84270	NA	intron (NR_049833, intron 1 of 3)	LTR5_Hs|LTR|ERVK	-6031	NM_004585	5920	Hs.17466	NM_004585	HPRD:05479	RARRES3	HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3	retinoic acid receptor responder (tazarotene induced) 3	protein-coding
19-PTNLD28-TUMOR_peak_90880	chr7	2098494	2098608	+	4.84270	NA	intron (NM_001013836, intron 12 of 18)	G-rich|Low_complexity|Low_complexity	174032	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_82342	chr5	135352983	135353136	+	4.84270	NA	Intergenic	Intergenic	-11525	NM_000358	7045	Hs.369397	NM_000358	HPRD:03409	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor, beta-induced, 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_3712	chr1	55969859	55970385	+	4.84270	NA	Intergenic	Intergenic	278808	NR_039618	100616272		NR_039618	miRBase:MI0016759	MIR4422	-	microRNA 4422	ncRNA
19-PTNLD28-TUMOR_peak_47943	chr19	17848445	17848536	+	4.84191	NA	Intergenic	AluSz|SINE|Alu	-10037	NM_001161357	23149	Hs.96485	NM_015122	HPRD:16887	FCHO1	-	FCH domain only 1	protein-coding
19-PTNLD28-TUMOR_peak_22905	chr12	8113166	8113274	+	4.83791	NA	Intergenic	AluY|SINE|Alu	-24328	NM_006931	6515	Hs.419240	NM_006931	HPRD:00686	SLC2A3	GLUT3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_64242	chr22	18291587	18291687	+	4.83791	NA	exon (NM_015241, exon 29 of 32)	exon (NM_015241, exon 29 of 32)	31581	NR_103718	200298	Hs.517397	NR_103718	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
19-PTNLD28-TUMOR_peak_47955	chr19	17905813	17905917	+	4.83703	NA	promoter-TSS (NM_014256)	promoter-TSS (NM_014256)	-54	NM_014256	10331	Hs.69009	NM_014256	HPRD:10431	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_43264	chr17	71307174	71307338	+	4.83266	NA	intron (NM_012121, intron 1 of 1)	CpG	887	NM_012121	23580	Hs.3903	NM_012121	HPRD:08383	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
19-PTNLD28-TUMOR_peak_53158	chr2	65828869	65828974	+	4.83075	NA	Intergenic	SVA_D|Other|Other	-169265	NM_181784	200734	Hs.59332	NM_181784	HPRD:18100	SPRED2	Spred-2	sprouty-related, EVH1 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_103569	chr9	69467794	69467882	+	4.83075	NA	Intergenic	MSTA|LTR|ERVL-MaLR	85857	NM_001098805	728747	Hs.645502	NM_001098805	ENSG00000172014	ANKRD20A4	-	ankyrin repeat domain 20 family, member A4	protein-coding
19-PTNLD28-TUMOR_peak_40272	chr17	14942024	14942301	+	4.83075	NA	Intergenic	Intergenic	7870	NR_033371	94150	Hs.147654	NR_033371	ENSG00000259944	CDRT7	LINC00025|NCRNA00025	CMT1A duplicated region transcript 7 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_41580	chr17	41116741	41116852	+	4.83075	NA	promoter-TSS (NM_001261434)	promoter-TSS (NM_001261434)	-281	NM_001261434	80755	Hs.317403	NM_001261434	HPRD:14524	AARSD1	-	alanyl-tRNA synthetase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_3256	chr1	47141326	47141469	+	4.83075	NA	3' UTR (NM_014774, exon 11 of 11)	3' UTR (NM_014774, exon 11 of 11)	1689	NR_038827	100130197	Hs.568643	NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_107523	chrX	10007952	10008160	+	4.83075	NA	intron (NM_015691, intron 1 of 22)	intron (NM_015691, intron 1 of 22)	24261	NM_015691	55841	Hs.527524	NM_015691	HPRD:11136	WWC3	BM042	WWC family member 3	protein-coding
19-PTNLD28-TUMOR_peak_28883	chr13	102102855	102102961	+	4.83075	NA	Intergenic	Intergenic	-2036	NM_004791	9358	Hs.696554	NM_004791	HPRD:07253	ITGBL1	OSCP|TIED	integrin, beta-like 1 (with EGF-like repeat domains)	protein-coding
19-PTNLD28-TUMOR_peak_75130	chr4	47839462	47839568	+	4.83075	NA	intron (NM_001278585, intron 1 of 19)	CpG	608	NM_006587	10699	Hs.518618	NM_006587	HPRD:05573	CORIN	ATC2|CRN|Lrp4|PEE5|TMPRSS10	corin, serine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_34954	chr15	84841881	84842043	+	4.82914	NA	intron (NM_001243531, intron 1 of 2)	CpG	720	NM_001243531	100505679	Hs.726826	NM_001243531	ENSG00000259511	UBE2Q2L	-	ubiquitin-conjugating enzyme E2Q family member 2-like	protein-coding
19-PTNLD28-TUMOR_peak_79651	chr5	40836122	40836241	+	4.82914	NA	promoter-TSS (NM_000997)	promoter-TSS (NM_000997)	-794	NM_000997	6167	Hs.447582	NM_000997		RPL37	L37	ribosomal protein L37	protein-coding
19-PTNLD28-TUMOR_peak_174	chr1	1631531	1631649	+	4.82914	NA	intron (NR_002946, intron 1 of 5).2	CpG	212	NR_002946	8511	Hs.671760	NR_002946	HPRD:04502	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_103921	chr9	78504989	78505125	+	4.82914	NA	promoter-TSS (NM_001190482)	promoter-TSS (NM_001190482)	-503	NR_120409	5125	Hs.368542	NM_006200	HPRD:08985	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
19-PTNLD28-TUMOR_peak_41289	chr17	37369203	37369562	+	4.82778	NA	exon (NM_198993, exon 10 of 11)	exon (NM_198993, exon 10 of 11)	12658	NM_198993	342667	Hs.145068	NM_198993	HPRD:18113	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
19-PTNLD28-TUMOR_peak_48224	chr19	21646206	21646396	+	4.82778	NA	Intergenic	Intergenic	-20216	NR_037194	400680	Hs.710554	NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
19-PTNLD28-TUMOR_peak_95811	chr7	139931383	139931499	+	4.82778	NA	Intergenic	Intergenic	54380	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_87867	chr6	47623811	47623899	+	4.81907	NA	promoter-TSS (NM_153839)	promoter-TSS (NM_153839)	-471	NM_153839	222611	Hs.724860	NM_153839	HPRD:17055	GPR111	PGR20|hGPCR35	G protein-coupled receptor 111	protein-coding
19-PTNLD28-TUMOR_peak_50798	chr2	1623928	1624016	+	4.81907	NA	Intergenic	L2a|LINE|L2	124347	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_44046	chr17	79988963	79989051	+	4.81907	NA	promoter-TSS (NM_005052)	promoter-TSS (NM_005052)	-525	NM_005052	5881	Hs.45002	NM_005052	HPRD:03629	RAC3	-	ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)	protein-coding
19-PTNLD28-TUMOR_peak_74388	chr4	8912687	8912789	+	4.81907	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-38739	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
19-PTNLD28-TUMOR_peak_16326	chr10	134222066	134222199	+	4.81907	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	11430	NM_001098637	170394	Hs.527751	NM_138499	HPRD:11465	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_106431	chr9	133003039	133003127	+	4.81883	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-25075	NM_001291815	256158	Hs.32194	NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
19-PTNLD28-TUMOR_peak_80732	chr5	74349431	74349654	+	4.81883	NA	Intergenic	CpG	-22818	NM_016591	51301	Hs.272404	NM_016591	HPRD:16651	GCNT4	C2GNT3	glucosaminyl (N-acetyl) transferase 4, core 2	protein-coding
19-PTNLD28-TUMOR_peak_27301	chr12	133343766	133343878	+	4.81678	NA	Intergenic	AluSx1|SINE|Alu	-5348	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4	ankyrin repeat and LEM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_50305	chr19	54982864	54982952	+	4.81678	NA	intron (NM_145057, intron 1 of 2)	intron (NM_145057, intron 1 of 2)	1529	NM_145057	148170	Hs.415791	NM_145057	HPRD:13023	CDC42EP5	Borg3|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding
19-PTNLD28-TUMOR_peak_41153	chr17	34958191	34958395	+	4.81678	NA	exon (NM_024864, exon 1 of 5)	exon (NM_024864, exon 1 of 5)	268	NM_024864	79922	Hs.194864	NM_024864	HPRD:08656	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_51944	chr2	30455180	30455277	+	4.81399	NA	intron (NM_030915, intron 1 of 2)	CpG	831	NM_030915	81606	Hs.567598	NM_030915	HPRD:13965	LBH	-	limb bud and heart development	protein-coding
19-PTNLD28-TUMOR_peak_1428	chr1	23116916	23117034	+	4.81200	NA	intron (NM_004442, intron 3 of 15)	intron (NM_004442, intron 3 of 15)	70965	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
19-PTNLD28-TUMOR_peak_100683	chr8	126459136	126459496	+	4.81200	NA	Intergenic	MIRc|SINE|MIR	14865	NM_001282985	10221	Hs.444947	NM_025195	HPRD:09863	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19-PTNLD28-TUMOR_peak_71885	chr3	156009571	156009867	+	4.80777	NA	exon (NM_172159, exon 1 of 14)	exon (NM_172159, exon 1 of 14)	943	NM_172159	7881	Hs.654519	NM_003471	HPRD:03089	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
19-PTNLD28-TUMOR_peak_39497	chr16	89819281	89819431	+	4.80777	NA	intron (NM_001286167, intron 30 of 42)	LTR13|LTR|ERVK	31404	NM_001113525	92822	Hs.290154	NM_152287	HPRD:12235	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
19-PTNLD28-TUMOR_peak_23074	chr12	12170326	12170461	+	4.80777	NA	Intergenic	Intergenic	-53485	NM_138723	79370	Hs.210343	NM_030766	HPRD:05841	BCL2L14	BCLG	BCL2-like 14 (apoptosis facilitator)	protein-coding
19-PTNLD28-TUMOR_peak_91908	chr7	32708439	32708717	+	4.80777	NA	intron (NR_036680, intron 5 of 16)	intron (NR_036680, intron 5 of 16)	50202	NR_036680	100129460	Hs.633705	NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_25209	chr12	69964717	69964805	+	4.80777	NA	intron (NM_001278355, intron 7 of 9)	intron (NM_001278355, intron 7 of 9)	-13742	NR_037476	100500868		NR_037476		MIR3913-2	-	microRNA 3913-2	ncRNA
19-PTNLD28-TUMOR_peak_85883	chr6	21664591	21664731	+	4.80777	NA	Intergenic	CpG	-2014	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_109504	chrX	132629475	132629662	+	4.80777	NA	Intergenic	Intergenic	-80363	NM_001448	2239	Hs.58367	NM_001448		GPC4	K-glypican	glypican 4	protein-coding
19-PTNLD28-TUMOR_peak_50151	chr19	53201538	53201626	+	4.80777	NA	Intergenic	LTR5_Hs|LTR|ERVK	-7748	NM_001277949	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_60365	chr20	29534997	29535085	+	4.80777	NA	Intergenic	CpG	-76838	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_107402	chrX	3263333	3263603	+	4.80777	NA	intron (NM_015419, intron 1 of 6)	CpG	1216	NM_015419	25878	Hs.369422	NM_015419	HPRD:06456	MXRA5	-	matrix-remodelling associated 5	protein-coding
19-PTNLD28-TUMOR_peak_73331	chr3	193815444	193815590	+	4.80777	NA	Intergenic	MER5A|DNA|hAT-Charlie	-38414	NM_005524	3280	Hs.250666	NM_005524	HPRD:00770	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_76815	chr4	120446652	120446747	+	4.80777	NA	intron (NM_033437, intron 12 of 20)	intron (NM_033437, intron 12 of 20)	70761	NR_037630	645513	Hs.677546	NR_037630	ENSG00000245958	LOC645513	-	uncharacterized LOC645513	ncRNA
19-PTNLD28-TUMOR_peak_59825	chr20	11435941	11436137	+	4.80777	NA	Intergenic	Intergenic	-182008	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
19-PTNLD28-TUMOR_peak_36892	chr16	24150094	24150230	+	4.80777	NA	intron (NM_212535, intron 9 of 16)	L1MA9|LINE|L1	-116712	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_41288	chr17	37368585	37368721	+	4.80730	NA	intron (NM_198993, intron 10 of 10)	intron (NM_198993, intron 10 of 10)	12117	NM_000981	6143	Hs.381061	NM_000981	HPRD:01594	RPL19	L19	ribosomal protein L19	protein-coding
19-PTNLD28-TUMOR_peak_17483	chr11	17838303	17838394	+	4.80730	NA	intron (NR_104041, intron 9 of 9)	intron (NR_104041, intron 9 of 9)	80853	NM_004976	3746	Hs.552896	NM_004976	HPRD:15936	KCNC1	KV3.1|KV4|NGK2	potassium voltage-gated channel, Shaw-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_13473	chr10	48952219	48952310	+	4.80730	NA	promoter-TSS (NR_111968)	promoter-TSS (NR_111968)	-328	NR_111968	414212	Hs.661155	NR_048574	ENSG00000227194	GLUD1P7	GLUD1P2|GLUDP2|GLUDP7|bA342C24.3	glutamate dehydrogenase 1 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_38329	chr16	67335414	67335502	+	4.80730	NA	intron (NM_001100915, intron 5 of 15)	intron (NM_001100915, intron 5 of 15)	21966	NM_001129731	25894	Hs.188781	NM_015432	HPRD:10890	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding
19-PTNLD28-TUMOR_peak_24673	chr12	56522360	56522450	+	4.80659	NA	exon (NM_001184796, exon 1 of 31)	exon (NM_001184796, exon 1 of 31)	419	NM_001184796	23344	Hs.632729	NM_015292	HPRD:14367	ESYT1	FAM62A|MBC2	extended synaptotagmin-like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46405	chr18	77336869	77337192	+	4.80659	NA	Intergenic	Intergenic	-102771	NM_004715	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_7283	chr1	156173314	156173407	+	4.80108	NA	intron (NM_014655, intron 2 of 3)	intron (NM_014655, intron 2 of 3)	-9419	NM_001199654	11243	Hs.530479	NM_007221	HPRD:11441	PMF1	-	polyamine-modulated factor 1	protein-coding
19-PTNLD28-TUMOR_peak_63306	chr21	35855449	35855574	+	4.80108	NA	intron (NM_001270402, intron 1 of 2)	LTR34|LTR|ERV1	-23275	NM_001270405	3753	Hs.121495	NM_000219	HPRD:01442	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel, Isk-related family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_69086	chr3	73674015	73674176	+	4.80108	NA	promoter-TSS (NM_015009)	promoter-TSS (NM_015009)	-23	NM_015009	23024	Hs.743998	NM_015009	HPRD:15115	PDZRN3	LNX3|SEMACAP3	PDZ domain containing ring finger 3	protein-coding
19-PTNLD28-TUMOR_peak_49409	chr19	46047342	46047555	+	4.80108	NA	intron (NM_001017989, intron 1 of 1)	MIR|SINE|MIR	36760	NM_003370	7408	Hs.515469	NM_003370	HPRD:03415	VASP	-	vasodilator-stimulated phosphoprotein	protein-coding
19-PTNLD28-TUMOR_peak_16113	chr10	126082683	126082771	+	4.80108	NA	Intergenic	Intergenic	24818	NM_000274	4942	Hs.523332	NM_000274	HPRD:02021	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_82639	chr5	139956432	139956522	+	4.80108	NA	Intergenic	L1MB5|LINE|L1	12057	NM_080670	113829	Hs.406840	NM_080670	HPRD:11574	SLC35A4	-	solute carrier family 35, member A4	protein-coding
19-PTNLD28-TUMOR_peak_42251	chr17	48581516	48581715	+	4.80108	NA	Intergenic	Intergenic	-4130	NM_032133	84073	Hs.398196	NM_032133	HPRD:11378	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
19-PTNLD28-TUMOR_peak_35328	chr15	93573889	93574113	+	4.80108	NA	Intergenic	Intergenic	42388	NM_001166286	56963	Hs.271277	NM_020211	HPRD:09560	RGMA	RGM	repulsive guidance molecule family member a	protein-coding
19-PTNLD28-TUMOR_peak_81575	chr5	112299581	112299700	+	4.80108	NA	Intergenic	Intergenic	-12767	NR_038352	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_42675	chr17	57923023	57923196	+	4.80066	NA	Intergenic	Intergenic	4482	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
19-PTNLD28-TUMOR_peak_34371	chr15	72467747	72467884	+	4.79521	NA	intron (NM_001012642, intron 1 of 11)	L2c|LINE|L2	22321	NM_001012642	196996	Hs.596332	NM_001012642	HPRD:13161	GRAMD2	-	GRAM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_58479	chr2	220118889	220118986	+	4.79196	NA	promoter-TSS (NM_006000)	promoter-TSS (NM_006000)	-269	NM_006000	7277	Hs.75318	NM_006000	HPRD:01851	TUBA4A	H2-ALPHA|TUBA1	tubulin, alpha 4a	protein-coding
19-PTNLD28-TUMOR_peak_31044	chr14	69998225	69998358	+	4.79109	NA	Intergenic	Intergenic	43309	NM_001271507	56936	Hs.458319	NM_020181		CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
19-PTNLD28-TUMOR_peak_33550	chr15	51058130	51058233	+	4.79109	NA	promoter-TSS (NM_032802)	promoter-TSS (NM_032802)	-271	NM_032802	84888	Hs.401537	NM_032802	HPRD:09742	SPPL2A	IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
19-PTNLD28-TUMOR_peak_14737	chr10	88471326	88471831	+	4.79109	NA	intron (NM_001171610, intron 9 of 13)	CpG	43152	NM_007078	11155	Hs.657271	NM_007078	HPRD:16172	LDB3	CMD1C|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
19-PTNLD28-TUMOR_peak_16572	chr11	1458954	1459060	+	4.79109	NA	intron (NM_001256629, intron 2 of 19)	intron (NM_001256629, intron 2 of 19)	26625	NM_001256630	9024	Hs.170819	NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_66475	chr3	9774598	9774727	+	4.78794	NA	intron (NM_001003694, intron 1 of 13)	intron (NM_001003694, intron 1 of 13)	1228	NM_004634	7862	Hs.1004	NM_004634	HPRD:03875	BRPF1	BR140	bromodomain and PHD finger containing, 1	protein-coding
19-PTNLD28-TUMOR_peak_3960	chr1	62207520	62207614	+	4.78794	NA	promoter-TSS (NM_176877)	promoter-TSS (NM_176877)	-582	NM_176877	10207	Hs.478125	NM_005799	HPRD:04434	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_50846	chr2	3522247	3522344	+	4.78695	NA	intron (NM_018269, intron 1 of 3)	CpG	1055	NM_018269	55256	Hs.502773	NM_018269	HPRD:17607	ADI1	APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_97836	chr8	27454808	27454896	+	4.78695	NA	non-coding (NR_045494, exon 9 of 9)	non-coding (NR_045494, exon 9 of 9)	13416	NR_106902	102465508		NR_106902		MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
19-PTNLD28-TUMOR_peak_63585	chr21	40816740	40817015	+	4.78695	NA	promoter-TSS (NM_152505)	promoter-TSS (NM_152505)	-749	NM_152505	150082	Hs.517284	NM_152505	HPRD:10742	LCA5L	C21orf13	Leber congenital amaurosis 5-like	protein-coding
19-PTNLD28-TUMOR_peak_107745	chrX	20285549	20285672	+	4.78695	NA	promoter-TSS (NM_004586)	promoter-TSS (NM_004586)	-860	NM_004586	6197	Hs.445387	NM_004586	HPRD:02092	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase, 90kDa, polypeptide 3	protein-coding
19-PTNLD28-TUMOR_peak_97542	chr8	21961094	21961194	+	4.78220	NA	3' UTR (NM_022749, exon 17 of 17)	3' UTR (NM_022749, exon 17 of 17)	5788	NM_024815	79873	Hs.527101	NM_024815		NUDT18	MTH3	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding
19-PTNLD28-TUMOR_peak_54308	chr2	97206011	97206099	+	4.78220	NA	intron (NM_212481, intron 1 of 6)	intron (NM_212481, intron 1 of 6)	3591	NM_212481	10865	Hs.920	NM_006673	HPRD:12481	ARID5A	MRF-1|MRF1|RP11-363D14	AT rich interactive domain 5A (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_1226	chr1	19811154	19811259	+	4.78220	NA	promoter-TSS (NM_001282162)	promoter-TSS (NM_001282162)	-5	NM_001282162	832	Hs.432760	NM_004930	HPRD:11872	CAPZB	CAPB|CAPPB|CAPZ	capping protein (actin filament) muscle Z-line, beta	protein-coding
19-PTNLD28-TUMOR_peak_29172	chr13	114144035	114144123	+	4.77807	NA	intron (NM_001014283, intron 1 of 6)	intron (NM_001014283, intron 1 of 6)	944	NM_001014283	55208	Hs.682987	NM_018185		DCUN1D2	C13orf17	DCN1, defective in cullin neddylation 1, domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_39987	chr17	7387565	7387771	+	4.77807	NA	promoter-TSS (NM_000937)	promoter-TSS (NM_000937)	-30	NM_000937	5430	Hs.270017	NM_000937	HPRD:08916	POLR2A	POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	polymerase (RNA) II (DNA directed) polypeptide A, 220kDa	protein-coding
19-PTNLD28-TUMOR_peak_8045	chr1	168274115	168274324	+	4.77807	NA	intron (NM_005149, intron 5 of 7)	intron (NM_005149, intron 5 of 7)	23941	NM_005149	9095	Hs.716656	NM_005149	HPRD:05214	TBX19	TBS19|TPIT|dJ747L4.1	T-box 19	protein-coding
19-PTNLD28-TUMOR_peak_103327	chr9	45727101	45727445	+	4.77807	NA	Intergenic	SST1|Satellite|centr	-389670	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_40339	chr17	16492691	16492795	+	4.77298	NA	Intergenic	CpG	-20223	NM_020653	57336	Hs.99724	NM_020653		ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
19-PTNLD28-TUMOR_peak_105451	chr9	114812791	114812894	+	4.77298	NA	intron (NM_001282640, intron 15 of 17)	intron (NM_001282640, intron 15 of 17)	118462	NR_039814	100616114		NR_039814		MIR4668	-	microRNA 4668	ncRNA
19-PTNLD28-TUMOR_peak_105663	chr9	118054575	118054663	+	4.77298	NA	intron (NM_017418, intron 3 of 7)	intron (NM_017418, intron 3 of 7)	150522	NM_017418	50514	Hs.148841	NM_017418	HPRD:16068	DEC1	CTS9	deleted in esophageal cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_53745	chr2	85165436	85165670	+	4.77298	NA	Intergenic	AluJr|SINE|Alu	-32678	NM_020122	56888	Hs.654968	NM_020122	HPRD:13761	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_37492	chr16	33434237	33434327	+	4.77298	NA	Intergenic	Intergenic	128961	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76P	RNU6-76	RNA, U6 small nuclear 76, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_61984	chr20	51298112	51298269	+	4.77298	NA	Intergenic	L4|LINE|RTE	60813	NR_110038	101927700	Hs.434465	NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
19-PTNLD28-TUMOR_peak_73452	chr3	194910702	194910790	+	4.77298	NA	intron (NM_152531, intron 2 of 3)	L1ME1|LINE|L1	42146	NR_102711	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_10273	chr1	223341180	223341282	+	4.77298	NA	Intergenic	L1PA3|LINE|L1	-24607	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_15064	chr10	98480606	98480758	+	4.77298	NA	promoter-TSS (NM_152309)	promoter-TSS (NM_152309)	-403	NM_152309	118788	Hs.310456	NM_152309	HPRD:06401	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_89503	chr6	133561943	133562088	+	4.77298	NA	promoter-TSS (NM_172103)	promoter-TSS (NM_172103)	-480	NM_172103	2070	Hs.596680	NM_004100	HPRD:04648	EYA4	CMD1J|DFNA10	EYA transcriptional coactivator and phosphatase 4	protein-coding
19-PTNLD28-TUMOR_peak_61016	chr20	37840085	37840223	+	4.77298	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	13237	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_71975	chr3	157442856	157443070	+	4.77298	NA	Intergenic	L1PA2|LINE|L1	181830	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_89420	chr6	128891409	128891801	+	4.77298	NA	Intergenic	Intergenic	-49786	NM_001291984	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_38957	chr16	81293612	81293705	+	4.77298	NA	intron (NM_017429, intron 3 of 10)	L1MC4a|LINE|L1	21362	NM_017429	53630	Hs.212172	NM_017429	HPRD:12042	BCO1	BCDO|BCDO1|BCMO|BCMO1|BCO	beta-carotene oxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_94827	chr7	108222546	108222651	+	4.77298	NA	Intergenic	Intergenic	-12386	NM_001287599	168451	Hs.707689	NM_182529	HPRD:15498	THAP5	-	THAP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_96796	chr7	158854439	158854547	+	4.77298	NA	intron (NM_003382, intron 4 of 12)	CpG	53448	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
19-PTNLD28-TUMOR_peak_88702	chr6	89827170	89827523	+	4.77298	NA	intron (NM_080743, intron 1 of 4)	CpG	454	NM_080743	135295	Hs.254414	NM_080743	HPRD:11605	SRSF12	SFRS13B|SFRS19|SRrp35	serine/arginine-rich splicing factor 12	protein-coding
19-PTNLD28-TUMOR_peak_96222	chr7	149389699	149389826	+	4.77298	NA	Intergenic	CpG	-22340	NM_032534	84626	Hs.299560	NM_032534	HPRD:11167	KRBA1	-	KRAB-A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73628	chr3	196815703	196815791	+	4.77298	NA	intron (NM_001098424, intron 16 of 25)	HAL1|LINE|L1	-59060	NM_005929	4241	Hs.184727	NM_005929	HPRD:01122	MFI2	CD228|MAP97|MTF1	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
19-PTNLD28-TUMOR_peak_31382	chr14	76900880	76900989	+	4.77298	NA	intron (NM_004452, intron 3 of 10)	AluSz|SINE|Alu	63244	NM_004452	2103	Hs.435845	NM_004452	HPRD:03700	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen-related receptor beta	protein-coding
19-PTNLD28-TUMOR_peak_56135	chr2	144694340	144694611	+	4.77298	NA	promoter-TSS (NR_110237)	promoter-TSS (NR_110237)	-159	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
19-PTNLD28-TUMOR_peak_2729	chr1	40723040	40723130	+	4.77238	NA	promoter-TSS (NM_005857)	promoter-TSS (NM_005857)	-637	NM_005857	10269	Hs.132642	NM_005857	HPRD:07349	ZMPSTE24	FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p	zinc metallopeptidase STE24	protein-coding
19-PTNLD28-TUMOR_peak_68246	chr3	50644765	50644853	+	4.77238	NA	3' UTR (NM_013324, exon 4 of 4)	3' UTR (NM_013324, exon 4 of 4)	4453	NM_013324	1154	Hs.655334	NM_013324	HPRD:03897	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2-containing protein	protein-coding
19-PTNLD28-TUMOR_peak_79330	chr5	32173773	32174013	+	4.77238	NA	intron (NM_022130, intron 1 of 3)	CpG	532	NM_022130	64083	Hs.408909	NM_022130	HPRD:11007	GOLPH3	GOPP1|GPP34|MIDAS	golgi phosphoprotein 3 (coat-protein)	protein-coding
19-PTNLD28-TUMOR_peak_50540	chr19	58513511	58513760	+	4.77238	NA	promoter-TSS (NR_036508)	promoter-TSS (NR_036508)	-627	NR_036508	100128398	Hs.655081	NR_036508	ENSG00000176593	LOC100128398	-	uncharacterized LOC100128398	ncRNA
19-PTNLD28-TUMOR_peak_29272	chr14	19886865	19887064	+	4.77238	NA	intron (NR_122111, intron 3 of 3)	intron (NR_122111, intron 3 of 3)	-7405	NR_073459	414763	Hs.617315	NR_073459	ENSG00000215394	BMS1P18	C14orf17|LINC00516	BMS1 pseudogene 18	pseudo
19-PTNLD28-TUMOR_peak_7716	chr1	161617469	161617592	+	4.77167	NA	Intergenic	Intergenic	-15375	NM_001190828	2213	Hs.654395	NM_004001	HPRD:06849	FCGR2B	CD32|CD32B|FCG2|FCGR2|IGFR2	Fc fragment of IgG, low affinity IIb, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_24271	chr12	52229958	52230046	+	4.77167	NA	Intergenic	Intergenic	-4301	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_38535	chr16	70257083	70257221	+	4.77167	NA	intron (NR_033959, intron 1 of 5)	intron (NR_033959, intron 1 of 5)	2784	NR_033959	100506060	Hs.655258	NR_033959	ENSG00000261556	SMG1P7	-	SMG1 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_63664	chr21	42880017	42880174	+	4.77167	NA	promoter-TSS (NM_001135099)	promoter-TSS (NM_001135099)	-10	NM_005656	7113	Hs.439309	NM_005656	HPRD:03637	TMPRSS2	PP9284|PRSS10	transmembrane protease, serine 2	protein-coding
19-PTNLD28-TUMOR_peak_30835	chr14	65698539	65698627	+	4.77167	NA	Intergenic	L1MEc|LINE|L1	-9518	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
19-PTNLD28-TUMOR_peak_51689	chr2	26934054	26934229	+	4.77167	NA	intron (NM_002246, intron 1 of 1)	MIRc|SINE|MIR	18560	NM_002246	3777	Hs.645288	NM_002246		KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium channel, subfamily K, member 3	protein-coding
19-PTNLD28-TUMOR_peak_48546	chr19	33667261	33667387	+	4.76680	NA	TTS (NM_173479)	TTS (NM_173479)	-18275	NM_002333	4037	Hs.515340	NM_002333		LRP3	-	low density lipoprotein receptor-related protein 3	protein-coding
19-PTNLD28-TUMOR_peak_93282	chr7	73758664	73758752	+	4.76670	NA	intron (NM_003388, intron 3 of 16)	intron (NM_003388, intron 3 of 16)	54903	NM_003388	7461	Hs.647018	NM_003388	HPRD:09140	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-GLY domain containing linker protein 2	protein-coding
19-PTNLD28-TUMOR_peak_12914	chr10	35103548	35103725	+	4.76670	NA	intron (NM_001184791, intron 1 of 20)	CpG	617	NM_001184791	56288	Hs.131489	NM_019619	HPRD:05994	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
19-PTNLD28-TUMOR_peak_46478	chr19	295255	295343	+	4.76561	NA	Intergenic	CpG	-3864	NM_003712	8612	Hs.465506	NM_003712	HPRD:06180	PPAP2C	LPP2|PAP-2c|PAP2-g	phosphatidic acid phosphatase type 2C	protein-coding
19-PTNLD28-TUMOR_peak_47283	chr19	11079287	11079383	+	4.76561	NA	intron (NM_003072, intron 1 of 34)	intron (NM_003072, intron 1 of 34)	7527	NM_001128849	6597	Hs.327527	NM_003072	HPRD:04459	SMARCA4	BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
19-PTNLD28-TUMOR_peak_97817	chr8	27184489	27184839	+	4.76408	NA	intron (NM_173174, intron 6 of 35)	L2c|LINE|L2	1583	NM_173175	2185	Hs.491322	NM_004103	HPRD:03131	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
19-PTNLD28-TUMOR_peak_1424	chr1	23077765	23077887	+	4.76408	NA	intron (NM_004442, intron 1 of 15)	intron (NM_004442, intron 1 of 15)	31816	NR_039832	100616391		NR_039832		MIR4684	-	microRNA 4684	ncRNA
19-PTNLD28-TUMOR_peak_48787	chr19	36981420	36981508	+	4.76320	NA	promoter-TSS (NM_001300970)	SVA_D|Other|Other	-660	NM_001300970	84924	Hs.533939	NM_032838	HPRD:15847	ZNF566	-	zinc finger protein 566	protein-coding
19-PTNLD28-TUMOR_peak_46858	chr19	5690455	5690596	+	4.76306	NA	exon (NM_033643, exon 2 of 4)	exon (NM_033643, exon 2 of 4)	179	NM_015414	25873	Hs.408018	NM_015414	HPRD:10201	RPL36	L36	ribosomal protein L36	protein-coding
19-PTNLD28-TUMOR_peak_24997	chr12	65003117	65003267	+	4.76159	NA	Intergenic	Intergenic	-1101	NR_040718	283349	Hs.643605	NM_178169	HPRD:08448	RASSF3	RASSF5	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_32440	chr15	20309677	20309818	+	4.75992	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-178250	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_62387	chr20	57581468	57581556	+	4.75682	NA	exon (NM_001336, exon 2 of 6)	exon (NM_001336, exon 2 of 6)	797	NM_001336	1522	Hs.252549	NM_001336	HPRD:04410	CTSZ	CTSX	cathepsin Z	protein-coding
19-PTNLD28-TUMOR_peak_39618	chr17	1391314	1391428	+	4.75614	NA	intron (NM_001080779, intron 1 of 31)	CpG	-2320	NM_001080950	4641	Hs.286226	NM_033375	HPRD:09411	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding
19-PTNLD28-TUMOR_peak_7881	chr1	165139126	165139258	+	4.75475	NA	Intergenic	Intergenic	186286	NM_001174069	4009	Hs.667312	NM_177398	HPRD:02623	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1, alpha	protein-coding
19-PTNLD28-TUMOR_peak_18402	chr11	46401348	46401506	+	4.74845	NA	promoter-TSS (NM_001270550)	promoter-TSS (NM_001270550)	-907	NM_001270550	4192	Hs.82045	NM_002391	HPRD:01200	MDK	ARAP|MK|NEGF2	midkine (neurite growth-promoting factor 2)	protein-coding
19-PTNLD28-TUMOR_peak_92478	chr7	48129098	48129208	+	4.74845	NA	intron (NR_109837, intron 1 of 6)	CpG	302	NM_001287430	7378	Hs.488240	NM_003364	HPRD:08932	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
19-PTNLD28-TUMOR_peak_22186	chr11	130404560	130404653	+	4.74544	NA	Intergenic	Intergenic	85737	NM_139055	170689	Hs.534221	NM_139055	HPRD:06330	ADAMTS15	-	ADAM metallopeptidase with thrombospondin type 1 motif, 15	protein-coding
19-PTNLD28-TUMOR_peak_83857	chr5	170000217	170000354	+	4.74544	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	69245	NM_001278340	30820	Hs.484111	NM_014592	HPRD:06879	KCNIP1	KCHIP1|VABP	Kv channel interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_30961	chr14	69093712	69094104	+	4.74544	NA	Intergenic	Intergenic	166723	NM_004926	677	Hs.85155	NM_004926	HPRD:03041	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_55538	chr2	127863802	127864207	+	4.74452	NA	intron (NM_139343, intron 1 of 18)	CpG	899	NM_139343	274	Hs.193163	NM_004305	HPRD:03150	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding
19-PTNLD28-TUMOR_peak_79257	chr5	25119569	25119756	+	4.74219	NA	Intergenic	L1PA2|LINE|L1	-278970	NR_037896	340107	Hs.145181	NR_037896	ENSG00000248908	LOC340107	-	uncharacterized LOC340107	ncRNA
19-PTNLD28-TUMOR_peak_62464	chr20	60712029	60712155	+	4.74219	NA	intron (NM_002792, intron 6 of 6)	intron (NM_002792, intron 6 of 6)	6422	NM_002792	5688	Hs.233952	NM_002792	HPRD:05967	PSMA7	C6|HSPC|RC6-1|XAPC7	proteasome (prosome, macropain) subunit, alpha type, 7	protein-coding
19-PTNLD28-TUMOR_peak_35712	chr16	1338027	1338148	+	4.74219	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-21067	NM_194260	7329	Hs.302903	NM_003345	HPRD:09045	UBE2I	C358B7.1|P18|UBC9	ubiquitin-conjugating enzyme E2I	protein-coding
19-PTNLD28-TUMOR_peak_3845	chr1	59492417	59492546	+	4.74219	NA	intron (NR_110626, intron 2 of 2)	MIRb|SINE|MIR	6333	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
19-PTNLD28-TUMOR_peak_103047	chr9	38197028	38197116	+	4.74219	NA	Intergenic	AluJo|SINE|Alu	-127862	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_18426	chr11	46917514	46917633	+	4.74219	NA	intron (NM_002334, intron 9 of 37)	intron (NM_002334, intron 9 of 37)	22600	NM_002334	4038	Hs.4930	NM_002334	HPRD:18517	LRP4	CLSS|LRP-4|LRP10|MEGF7|SOST2	low density lipoprotein receptor-related protein 4	protein-coding
19-PTNLD28-TUMOR_peak_59634	chr20	4594664	4594754	+	4.74219	NA	Intergenic	Intergenic	-72088	NM_001080121	5621	Hs.472010	NM_000311	HPRD:01453	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein	protein-coding
19-PTNLD28-TUMOR_peak_53776	chr2	85525945	85526118	+	4.74219	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	29388	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_98526	chr8	43102281	43102564	+	4.74219	NA	Intergenic	CpG	-45163	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family, member A	protein-coding
19-PTNLD28-TUMOR_peak_71006	chr3	134369369	134369532	+	4.74131	NA	intron (NM_178554, intron 1 of 10)	intron (NM_178554, intron 1 of 10)	414	NM_178554	339855	Hs.146730	NM_178554		KY	-	kyphoscoliosis peptidase	protein-coding
19-PTNLD28-TUMOR_peak_91108	chr7	5638534	5638698	+	4.74131	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	6180	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78597	chr5	531279	531413	+	4.74008	NA	Intergenic	Intergenic	4651	NR_039661	100616381		NR_039661	miRBase:MI0016802	MIR4456	-	microRNA 4456	ncRNA
19-PTNLD28-TUMOR_peak_20646	chr11	94522676	94522772	+	4.74008	NA	intron (NM_001301007, intron 1 of 11)	intron (NM_001301007, intron 1 of 11)	21216	NM_130847	154810	Hs.503594	NM_130847	HPRD:12451	AMOTL1	JEAP	angiomotin like 1	protein-coding
19-PTNLD28-TUMOR_peak_38556	chr16	70557916	70558007	+	4.74008	NA	promoter-TSS (NM_001195139)	promoter-TSS (NM_001195139)	270	NM_012426	23450	Hs.514435	NM_012426		SF3B3	RSE1|SAP130|SF3b130|STAF130	splicing factor 3b, subunit 3, 130kDa	protein-coding
19-PTNLD28-TUMOR_peak_26445	chr12	114309996	114310091	+	4.73877	NA	intron (NM_001146699, intron 21 of 24)	SVA_F|Other|Other	94133	NM_001146698	9904	Hs.7482	NM_016196	HPRD:15225	RBM19	-	RNA binding motif protein 19	protein-coding
19-PTNLD28-TUMOR_peak_75072	chr4	41258766	41259004	+	4.73877	NA	promoter-TSS (NM_004181)	promoter-TSS (NM_004181)	-13	NM_004181	7345	Hs.518731	NM_004181	HPRD:01877	UCHL1	HEL-117|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1	ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	protein-coding
19-PTNLD28-TUMOR_peak_14970	chr10	95462576	95462713	+	4.73877	NA	promoter-TSS (NM_145246)	promoter-TSS (NM_145246)	-315	NM_145246	118924	Hs.586650	NM_145246	HPRD:12319	FRA10AC1	C10orf4|F26C11.1-like|FRA10A	fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_52996	chr2	62481897	62482109	+	4.73877	NA	Intergenic	Intergenic	49042	NR_049824	100847087		NR_049824	miRBase:MI0018171	MIR5192	-	microRNA 5192	ncRNA
19-PTNLD28-TUMOR_peak_49560	chr19	47606142	47606423	+	4.73877	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	10727	NM_015168	23211	Hs.104661	NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
19-PTNLD28-TUMOR_peak_80970	chr5	81083819	81084002	+	4.73877	NA	Intergenic	Intergenic	-36838	NM_001256736	23635	Hs.102735	NM_012446		SSBP2	HSPC116|SOSS-B2	single-stranded DNA binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_24069	chr12	48974530	48974618	+	4.73877	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-10745	NM_002289	3906	Hs.72938	NM_002289	HPRD:01024	LALBA	-	lactalbumin, alpha-	protein-coding
19-PTNLD28-TUMOR_peak_4475	chr1	78957172	78957431	+	4.73877	NA	intron (NM_001039585, intron 1 of 3)	CpG	573	NM_000959	5737	Hs.654365	NM_000959	HPRD:08988	PTGFR	FP	prostaglandin F receptor (FP)	protein-coding
19-PTNLD28-TUMOR_peak_30080	chr14	45381640	45381797	+	4.73877	NA	promoter-TSS (NR_110050)	promoter-TSS (NR_110050)	-598	NR_110050	101927418	Hs.144809	NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
19-PTNLD28-TUMOR_peak_12528	chr10	26223866	26224034	+	4.73877	NA	intron (NM_017433, intron 1 of 34)	CpG	948	NM_017433	53904	Hs.662630	NM_017433	HPRD:06008	MYO3A	DFNB30	myosin IIIA	protein-coding
19-PTNLD28-TUMOR_peak_82440	chr5	137577436	137577658	+	4.73877	NA	Intergenic	CpG	-28515	NM_004661	8697	Hs.73625	NM_004661	HPRD:07221	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
19-PTNLD28-TUMOR_peak_78509	chr4	190643528	190643622	+	4.73877	NA	Intergenic	Intergenic	62815	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
19-PTNLD28-TUMOR_peak_6933	chr1	153264744	153264906	+	4.73877	NA	Intergenic	Intergenic	18369	NM_052891	114771	Hs.348266	NM_052891	HPRD:16297	PGLYRP3	PGRP-Ialpha|PGRPIA	peptidoglycan recognition protein 3	protein-coding
19-PTNLD28-TUMOR_peak_24058	chr12	48577259	48577405	+	4.73877	NA	promoter-TSS (NM_001013635)	promoter-TSS (NM_001013635)	-34	NM_001013635	387856	Hs.251699	NM_001013635	HPRD:18375	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
19-PTNLD28-TUMOR_peak_40779	chr17	26848440	26848528	+	4.73877	NA	Intergenic	Intergenic	-2475	NM_003593	8456	Hs.663679	NM_003593	HPRD:02907	FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding
19-PTNLD28-TUMOR_peak_35545	chr15	102118859	102118991	+	4.73877	NA	Intergenic	Intergenic	73669	NM_078474	80213	Hs.288912	NM_025141	HPRD:16554	TM2D3	BLP2	TM2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_93403	chr7	75096647	75096735	+	4.73877	NA	intron (NM_001099415, intron 3 of 14)	AluY|SINE|Alu	18874	NM_001099415	100101267	Hs.712563	NM_001099415	ENSG00000135213	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
19-PTNLD28-TUMOR_peak_104152	chr9	85670268	85670448	+	4.73877	NA	intron (NM_152573, intron 1 of 16)	L1HS|LINE|L1	7685	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
19-PTNLD28-TUMOR_peak_83601	chr5	159490920	159491008	+	4.73877	NA	intron (NM_003314, intron 7 of 7)	intron (NM_003314, intron 7 of 7)	54857	NM_003314	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_60154	chr20	22319887	22319975	+	4.73877	NA	Intergenic	Intergenic	-56492	NR_110615	101929663	Hs.143562	NR_110615	ENSG00000225321	LINC01427	-	long intergenic non-protein coding RNA 1427	ncRNA
19-PTNLD28-TUMOR_peak_75445	chr4	57844938	57845060	+	4.73441	NA	promoter-TSS (NM_000938)	promoter-TSS (NM_000938)	-110	NM_000938	5431	Hs.602757	NM_000938	HPRD:15943	POLR2B	POL2RB|RPB2|hRPB140|hsRPB2	polymerase (RNA) II (DNA directed) polypeptide B, 140kDa	protein-coding
19-PTNLD28-TUMOR_peak_39070	chr16	84211454	84211623	+	4.72858	NA	TTS (NM_178452)	TTS (NM_178452)	9138	NM_139353	9013	Hs.153022	NM_005679	HPRD:05364	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa	protein-coding
19-PTNLD28-TUMOR_peak_27737	chr13	31774339	31774531	+	4.72858	NA	intron (NM_194318, intron 1 of 14)	CpG	323	NM_194318	145173	Hs.13205	NM_194318	HPRD:12513	B3GALTL	B3GLCT|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 1,3-galactosyltransferase-like	protein-coding
19-PTNLD28-TUMOR_peak_44702	chr18	13266303	13266824	+	4.72858	NA	intron (NM_181482, intron 1 of 5)	intron (NM_181482, intron 1 of 5)	-11541	NM_181481	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_44458	chr18	8704499	8704692	+	4.72858	NA	intron (NR_120598, intron 1 of 1)	MIRb|SINE|MIR	3024	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_84445	chr5	178323381	178323538	+	4.72858	NA	intron (NM_030613, intron 1 of 4)	CpG	543	NM_030613	80108	Hs.654533	NM_030613	HPRD:08639	ZFP2	ZNF751	ZFP2 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_36767	chr16	21964912	21965022	+	4.72802	NA	intron (NM_003366, intron 1 of 13)	intron (NM_003366, intron 1 of 13)	358	NM_003366	7385	Hs.528803	NM_003366	HPRD:01876	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein II	protein-coding
19-PTNLD28-TUMOR_peak_24453	chr12	53575125	53575221	+	4.72802	NA	promoter-TSS (NM_015989)	promoter-TSS (NM_015989)	-480	NM_001244705	51380	Hs.279815	NM_015989	HPRD:16763	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_19886	chr11	72433004	72433144	+	4.72651	NA	5' UTR (NM_001135190, exon 1 of 31)	5' UTR (NM_001135190, exon 1 of 31)	329	NM_015242	116985	Hs.503165	NM_015242	HPRD:09440	ARAP1	CENTD2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_16103	chr10	125852133	125852353	+	4.72651	NA	promoter-TSS (NM_014863)	promoter-TSS (NM_014863)	-303	NM_014863	51363	Hs.287537	NM_014863	HPRD:12203	CHST15	BRAG|GALNAC4S-6ST	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
19-PTNLD28-TUMOR_peak_53326	chr2	70057165	70057420	+	4.72651	NA	intron (NM_178439, intron 1 of 13)	CpG	474	NM_178439	64395	Hs.293971	NM_178439		GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less, spermatogenesis associated 1	protein-coding
19-PTNLD28-TUMOR_peak_68146	chr3	49709268	49709356	+	4.72260	NA	TTS (NM_003458)	TTS (NM_003458)	-2123	NM_001640	327	Hs.517969	NM_001640	HPRD:00034	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
19-PTNLD28-TUMOR_peak_107182	chrUn_gl000225	56995	57101	+	4.72181	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
19-PTNLD28-TUMOR_peak_47853	chr19	16936104	16936273	+	4.71990	NA	Intergenic	L2b|LINE|L2	-4010	NM_015260	23309	Hs.13999	NM_015260	HPRD:09691	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
19-PTNLD28-TUMOR_peak_14601	chr10	81965383	81965486	+	4.71831	NA	promoter-TSS (NM_145868)	promoter-TSS (NM_145868)	-1	NM_001278407	311	Hs.530291	NM_001157	HPRD:03983	ANXA11	ANX11|CAP50	annexin A11	protein-coding
19-PTNLD28-TUMOR_peak_53771	chr2	85491752	85491840	+	4.71470	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	63623	NM_001206840	10618	Hs.593382	NM_006464	HPRD:04343	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
19-PTNLD28-TUMOR_peak_96287	chr7	150145901	150146012	+	4.71470	NA	TTS (NR_034033)	TTS (NR_034033)	-2006	NM_175571	155038	Hs.647121	NM_175571	HPRD:13577	GIMAP8	IAN-9|IAN6|IAN9|IANT|hIAN6	GTPase, IMAP family member 8	protein-coding
19-PTNLD28-TUMOR_peak_55544	chr2	127975588	127975676	+	4.71470	NA	Intergenic	Intergenic	-12289	NM_001001665	339761	Hs.407639	NM_001001665	HPRD:13360	CYP27C1	-	cytochrome P450, family 27, subfamily C, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_30814	chr14	65362640	65362842	+	4.71470	NA	Intergenic	SVA_E|Other|Other	-18338	NM_001204064	91612	Hs.731537	NM_145165	HPRD:12262	CHURC1	C14orf52|chch	churchill domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_29054	chr13	110959390	110959649	+	4.71320	NA	promoter-TSS (NM_001845)	promoter-TSS (NM_001845)	-23	NM_001845	1282	Hs.17441	NM_001845	HPRD:00359	COL4A1	HANAC|ICH|POREN1|arresten	collagen, type IV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_81299	chr5	98118723	98118882	+	4.71320	NA	intron (NM_001012761, intron 4 of 4)	intron (NM_001012761, intron 4 of 4)	-10014	NR_033932	503569	Hs.586188	NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_54420	chr2	99362376	99362472	+	4.71320	NA	Intergenic	MER102c|DNA|hAT-Charlie	-14835	NM_012214	11320	Hs.177576	NM_012214	HPRD:06860	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	protein-coding
19-PTNLD28-TUMOR_peak_54804	chr2	110267811	110267936	+	4.71320	NA	Intergenic	Intergenic	103910	NM_178584	151011	Hs.469615	NM_144710	HPRD:15325	SEPT10	-	septin 10	protein-coding
19-PTNLD28-TUMOR_peak_34595	chr15	76005139	76005227	+	4.71320	NA	promoter-TSS (NM_001897)	promoter-TSS (NM_001897)	6	NM_001897	1464	Hs.513044	NM_001897	HPRD:03105	CSPG4	HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
19-PTNLD28-TUMOR_peak_864	chr1	12769824	12769951	+	4.71320	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-6231	NM_001103170	126767	Hs.464705	NM_001103169	ENSG00000188984	AADACL3	-	arylacetamide deacetylase-like 3	protein-coding
19-PTNLD28-TUMOR_peak_71541	chr3	147137006	147137322	+	4.71320	NA	Intergenic	CpG	-1950	NR_121655	440982	Hs.535724	NR_121655		LOC440982	-	uncharacterized LOC440982	ncRNA
19-PTNLD28-TUMOR_peak_78756	chr5	6687093	6687181	+	4.71320	NA	intron (NR_103771, intron 2 of 2)	intron (NR_103771, intron 2 of 2)	20687	NR_103771	100505625	Hs.550028	NR_103771	ENSG00000248677	LOC100505625	-	uncharacterized LOC100505625	ncRNA
19-PTNLD28-TUMOR_peak_32803	chr15	30422355	30422443	+	4.71320	NA	intron (NR_026859, intron 4 of 4)	intron (NR_026859, intron 4 of 4)	-5591	NR_033933	653075	Hs.727141	NR_033933		GOLGA8T	-	golgin A8 family, member T	pseudo
19-PTNLD28-TUMOR_peak_87432	chr6	41545676	41545764	+	4.71320	NA	intron (NM_001012426, intron 2 of 16)	intron (NM_001012426, intron 2 of 16)	-20741	NR_039784	100616178		NR_039784		MIR4641	-	microRNA 4641	ncRNA
19-PTNLD28-TUMOR_peak_26848	chr12	122943937	122944043	+	4.71320	NA	Intergenic	AluJo|SINE|Alu	-36874	NM_002956	6249	Hs.524809	NM_002956	HPRD:01568	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-GLY domain containing linker protein 1	protein-coding
19-PTNLD28-TUMOR_peak_35963	chr16	4229212	4229314	+	4.71131	NA	Intergenic	Intergenic	62818	NM_001098814	6345	Hs.10041	NM_001098814	ENSG00000185739	SRL	-	sarcalumenin	protein-coding
19-PTNLD28-TUMOR_peak_5421	chr1	110361233	110361346	+	4.70637	NA	Intergenic	Intergenic	-54645	NM_024526	79574	Hs.485352	NM_024526	HPRD:13277	EPS8L3	EPS8R3	EPS8-like 3	protein-coding
19-PTNLD28-TUMOR_peak_67973	chr3	47205907	47206089	+	4.70637	NA	promoter-TSS (NM_014159)	promoter-TSS (NM_014159)	138	NR_033373	285352	Hs.570631	NR_033373		KIF9-AS1	-	KIF9 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_39150	chr16	85160580	85160668	+	4.70637	NA	Intergenic	Intergenic	-10132	NR_033984	400548	Hs.592054	NR_033984		LOC400548	-	uncharacterized LOC400548	ncRNA
19-PTNLD28-TUMOR_peak_49952	chr19	50861122	50861210	+	4.70637	NA	TTS (NM_004851)	TTS (NM_004851)	7765	NM_004851	9476	Hs.512843	NM_004851	HPRD:07064	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
19-PTNLD28-TUMOR_peak_18813	chr11	60718557	60718955	+	4.70637	NA	exon (NM_016582, exon 1 of 8)	exon (NM_016582, exon 1 of 8)	501	NM_016582	51296	Hs.237856	NM_016582	HPRD:11565	SLC15A3	OCTP|PHT2|PTR3	solute carrier family 15 (oligopeptide transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_51539	chr2	23608364	23608460	+	4.70578	NA	5' UTR (NM_052920, exon 1 of 14)	5' UTR (NM_052920, exon 1 of 14)	114	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch-like family member 29	protein-coding
19-PTNLD28-TUMOR_peak_62998	chr21	28218814	28219028	+	4.70578	NA	Intergenic	Intergenic	-1193	NM_006988	9510	Hs.643357	NM_006988	HPRD:05530	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif, 1	protein-coding
19-PTNLD28-TUMOR_peak_25349	chr12	75728221	75728311	+	4.70473	NA	promoter-TSS (NM_152779)	promoter-TSS (NM_152779)	-197	NM_152779	256710	Hs.567788	NM_152779	HPRD:14514	GLIPR1L1	ALKN2972|PRO7434	GLI pathogenesis-related 1 like 1	protein-coding
19-PTNLD28-TUMOR_peak_47633	chr19	14486542	14486732	+	4.70473	NA	Intergenic	Intergenic	-5319	NM_078481	976	Hs.466039	NM_001784	HPRD:03130	CD97	TM7LN1	CD97 molecule	protein-coding
19-PTNLD28-TUMOR_peak_27594	chr13	28528631	28528719	+	4.70473	NA	Intergenic	CpG	9332	NR_002162	432369	Hs.574118	NR_002162	ENSG00000180389	ATP5EP2	-	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_89421	chr6	128892013	128892126	+	4.70473	NA	Intergenic	Intergenic	-50250	NM_001291984	5796	Hs.155919	NM_002844	HPRD:03968	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type, K	protein-coding
19-PTNLD28-TUMOR_peak_79945	chr5	55374866	55374999	+	4.70473	NA	Intergenic	Intergenic	83937	NR_102755	441072	Hs.482141	NR_102755	ENSG00000227908	FLJ31104	-	uncharacterized LOC441072	ncRNA
19-PTNLD28-TUMOR_peak_48279	chr19	23495389	23495564	+	4.70473	NA	Intergenic	BSR/Beta|Satellite|Satellite	-38423	NR_103742	100132815	Hs.629249	NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_70938	chr3	133476675	133476830	+	4.70473	NA	exon (NM_001063, exon 8 of 17)	exon (NM_001063, exon 8 of 17)	11775	NM_001063	7018	Hs.518267	NM_001063	HPRD:01811	TF	PRO1557|PRO2086|TFQTL1	transferrin	protein-coding
19-PTNLD28-TUMOR_peak_48862	chr19	38586073	38586319	+	4.70473	NA	intron (NM_015073, intron 4 of 21)	intron (NM_015073, intron 4 of 21)	128694	NM_001289978	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_49772	chr19	49393498	49393710	+	4.70473	NA	intron (NM_003323, intron 6 of 12)	LTR5_Hs|LTR|ERVK	8392	NM_003323	7288	Hs.104636	NM_003323	HPRD:03813	TULP2	CT65|TUBL2	tubby like protein 2	protein-coding
19-PTNLD28-TUMOR_peak_14920	chr10	94135583	94135736	+	4.70473	NA	Intergenic	SVA_F|Other|Other	-42759	NR_038243	100507674	Hs.568772	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_11273	chr1	240446265	240446413	+	4.70473	NA	intron (NM_020066, intron 7 of 17)	intron (NM_020066, intron 7 of 17)	191154	NM_020066	56776	Hs.24889	NM_020066	HPRD:10449	FMN2	-	formin 2	protein-coding
19-PTNLD28-TUMOR_peak_18465	chr11	47410297	47410521	+	4.70473	NA	Intergenic	L2a|LINE|L2	-10282	NM_001080547	6688	Hs.502511	NM_003120	HPRD:01305	SPI1	OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_27410	chr13	22033575	22033762	+	4.70473	NA	promoter-TSS (NR_104487)	promoter-TSS (NR_104487)	-159	NR_104486	253832	Hs.564611	NM_153251		ZDHHC20	4933421L13Rik|DHHC-20	zinc finger, DHHC-type containing 20	protein-coding
19-PTNLD28-TUMOR_peak_61616	chr20	47274324	47274493	+	4.70473	NA	intron (NM_020820, intron 17 of 39)	intron (NM_020820, intron 17 of 39)	170012	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_83955	chr5	171864764	171864852	+	4.70473	NA	intron (NM_001017995, intron 1 of 12)	intron (NM_001017995, intron 1 of 12)	16719	NM_001017995	285590	Hs.285666	NM_001017995	HPRD:18591	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
19-PTNLD28-TUMOR_peak_109652	chrX	140571265	140571367	+	4.70473	NA	Intergenic	Intergenic	-19527	NR_037183	619455	Hs.590784	NR_037183		SPANXA2-OT1	CXorf18	SPANXA2 overlapping transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_12645	chr10	29593600	29593706	+	4.70473	NA	intron (NM_032517, intron 3 of 4)	intron (NM_032517, intron 3 of 4)	15663	NM_032517	84569	Hs.558572	NM_032517	HPRD:14336	LYZL1	KAAG648|LYC2|PRO1278|bA534G20.1	lysozyme-like 1	protein-coding
19-PTNLD28-TUMOR_peak_23538	chr12	27745651	27745880	+	4.70473	NA	intron (NM_001198915, intron 2 of 26)	intron (NM_001198915, intron 2 of 26)	68720	NM_001198916	8496	Hs.172445	NM_003622	HPRD:04390	PPFIBP1	L2|SGT2|hSGT2|hSgt2p	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
19-PTNLD28-TUMOR_peak_12740	chr10	30752993	30753081	+	4.70473	NA	Intergenic	Intergenic	30087	NM_005204	1326	Hs.432453	NM_005204	HPRD:01863	MAP3K8	COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
19-PTNLD28-TUMOR_peak_43135	chr17	66539114	66539202	+	4.70473	NA	intron (NM_001243746, intron 6 of 11)	intron (NM_001243746, intron 6 of 11)	15410	NR_027751	54757	Hs.268874	NM_017565		FAM20A	AI1G|AIGFS|FP2747	family with sequence similarity 20, member A	protein-coding
19-PTNLD28-TUMOR_peak_79066	chr5	15426080	15426168	+	4.70473	NA	Intergenic	Intergenic	-74181	NM_012304	23194	Hs.433057	NM_012304	HPRD:05740	FBXL7	FBL6|FBL7	F-box and leucine-rich repeat protein 7	protein-coding
19-PTNLD28-TUMOR_peak_33644	chr15	55509848	55509994	+	4.70473	NA	intron (NM_183234, intron 6 of 6)	intron (NM_183234, intron 6 of 6)	-20690	NM_016304	51187	Hs.274772	NM_016304		RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42100	chr17	47188036	47188135	+	4.70473	NA	Intergenic	PRIMA4-int|LTR|ERV1	-21737	NM_001159388	124872	Hs.374679	NM_153446	HPRD:13558	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_77265	chr4	141173309	141173555	+	4.69526	NA	Intergenic	Intergenic	-5008	NM_032547	60592	Hs.480815	NM_032547	HPRD:18027	SCOC	SCOCO	short coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_13292	chr10	45459584	45459739	+	4.69526	NA	intron (NM_032023, intron 1 of 10)	intron (NM_032023, intron 1 of 10)	4442	NM_032023	83937	Hs.522895	NM_032023	HPRD:15219	RASSF4	AD037	Ras association (RalGDS/AF-6) domain family member 4	protein-coding
19-PTNLD28-TUMOR_peak_104949	chr9	101570733	101571089	+	4.69478	NA	intron (NM_024642, intron 1 of 9)	intron (NM_024642, intron 1 of 9)	930	NM_024642	79695	Hs.47099	NM_024642	HPRD:13561	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
19-PTNLD28-TUMOR_peak_22114	chr11	129569968	129570105	+	4.69319	NA	Intergenic	MIR3|SINE|MIR	-82872	NR_120582	101929557	Hs.385785	NR_120582		LINC01395	-	long intergenic non-protein coding RNA 1395	ncRNA
19-PTNLD28-TUMOR_peak_62212	chr20	55385112	55385291	+	4.69113	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	180843	NM_003222	7022	Hs.473152	NM_003222	HPRD:03361	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	protein-coding
19-PTNLD28-TUMOR_peak_102668	chr9	33076190	33076342	+	4.69113	NA	intron (NM_018225, intron 1 of 11)	intron (NM_018225, intron 1 of 11)	448	NM_018225	55234	Hs.655351	NM_018225	HPRD:11588	SMU1	BWD|SMU-1|fSAP57	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_35468	chr15	100468725	100468896	+	4.68980	NA	Intergenic	Intergenic	-121678	NR_003260	196968	Hs.567763	NM_194295	HPRD:13192	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	DNM1 pseudogene 46	pseudo
19-PTNLD28-TUMOR_peak_34635	chr15	77362086	77362217	+	4.68980	NA	intron (NM_005724, intron 1 of 6)	intron (NM_005724, intron 1 of 6)	1419	NM_001168412	10099	Hs.744863	NM_005724	HPRD:15512	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
19-PTNLD28-TUMOR_peak_52180	chr2	38085594	38085682	+	4.68980	NA	intron (NR_110012, intron 2 of 3)	intron (NR_110012, intron 2 of 3)	17368	NR_110012	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
19-PTNLD28-TUMOR_peak_39422	chr16	89134296	89134416	+	4.68980	NA	Intergenic	Intergenic	-25861	NM_001243279	197322	Hs.461727	NM_174917	HPRD:14117	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_97523	chr8	21704965	21705063	+	4.68650	NA	Intergenic	MER52D|LTR|ERV1	-58668	NM_001165038	2675	Hs.441202	NM_001495	HPRD:11801	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_21866	chr11	124745917	124746056	+	4.68650	NA	exon (NM_022370, exon 16 of 28)	exon (NM_022370, exon 16 of 28)	10681	NM_022370	64221	Hs.435621	NM_022370	HPRD:10554	ROBO3	HGPPS|HGPS|RBIG1|RIG1	roundabout, axon guidance receptor, homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_60020	chr20	18039733	18039839	+	4.68650	NA	Intergenic	CpG	-1265	NM_021220	58495	Hs.661013	NM_021220	HPRD:15780	OVOL2	EUROIMAGE566589|ZNF339	ovo-like zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_63818	chr21	44496902	44497164	+	4.68650	NA	promoter-TSS (NM_000071)	promoter-TSS (NM_000071)	-561	NM_001178008	875	Hs.533013	NM_000071	HPRD:01994	CBS	HIP4	cystathionine-beta-synthase	protein-coding
19-PTNLD28-TUMOR_peak_147	chr1	1353955	1354054	+	4.68450	NA	3' UTR (NM_001145210, exon 4 of 4)	3' UTR (NM_001145210, exon 4 of 4)	2820	NM_001243535	441869	Hs.381222	NM_001145210	ENSG00000235098	ANKRD65	-	ankyrin repeat domain 65	protein-coding
19-PTNLD28-TUMOR_peak_33911	chr15	63357865	63357999	+	4.68450	NA	intron (NM_000366, intron 9 of 9)	intron (NM_000366, intron 9 of 9)	17296	NM_001018008	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
19-PTNLD28-TUMOR_peak_65635	chr22	40991156	40991264	+	4.68450	NA	intron (NM_001282661, intron 1 of 13)	AluSc|SINE|Alu	41513	NM_001282662	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_70420	chr3	125401666	125401836	+	4.68450	NA	Intergenic	Intergenic	-87370	NM_022776	114885	Hs.477440	NM_022776	HPRD:09481	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein-like 11	protein-coding
19-PTNLD28-TUMOR_peak_89678	chr6	139014173	139014519	+	4.68450	NA	intron (NR_033896, intron 1 of 3)	CpG	1541	NR_033896	441172	Hs.92290	NR_033896		FLJ46906	-	uncharacterized LOC441172	ncRNA
19-PTNLD28-TUMOR_peak_73993	chr4	3546130	3546298	+	4.68450	NA	Intergenic	Intergenic	-11990	NM_002337	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_5771	chr1	116371240	116371353	+	4.68450	NA	Intergenic	CpG	12037	NM_001111061	4808	Hs.46296	NM_005599	HPRD:01213	NHLH2	HEN2|NSCL2|bHLHa34	nescient helix loop helix 2	protein-coding
19-PTNLD28-TUMOR_peak_104416	chr9	91220256	91220596	+	4.68450	NA	Intergenic	Intergenic	46649	NM_001100111	286238	Hs.434185	NM_001100111		LOC286238	-	uncharacterized LOC286238	protein-coding
19-PTNLD28-TUMOR_peak_35383	chr15	98442376	98442464	+	4.68450	NA	Intergenic	Intergenic	-24761	NR_024173	91948	Hs.130423	NR_024172	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
19-PTNLD28-TUMOR_peak_42680	chr17	57947994	57948166	+	4.68437	NA	intron (NM_001193609, intron 5 of 7)	HAL1|LINE|L1	22226	NM_001193612	51174	Hs.463638	NM_016261	HPRD:06297	TUBD1	TUBD	tubulin, delta 1	protein-coding
19-PTNLD28-TUMOR_peak_54023	chr2	89128337	89128425	+	4.68437	NA	Intergenic	Intergenic	16497	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_54828	chr2	110552255	110552669	+	4.67733	NA	intron (NM_001037866, intron 2 of 19)	CpG	496	NM_005054	84220	Hs.469630	NM_005054	HPRD:04128	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_26330	chr12	111841294	111841382	+	4.67733	NA	Intergenic	Intergenic	-2414	NM_005475	10019	Hs.506784	NM_005475	HPRD:05480	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
19-PTNLD28-TUMOR_peak_18985	chr11	62313458	62313600	+	4.67498	NA	intron (NM_024060, intron 1 of 5)	CpG	803	NM_024060	79026	Hs.502756	NM_001620	HPRD:14684	AHNAK	AHNAKRS	AHNAK nucleoprotein	protein-coding
19-PTNLD28-TUMOR_peak_220	chr1	2262386	2262537	+	4.67313	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	21639	NR_024489	100129534	Hs.655313	NM_001127577		LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
19-PTNLD28-TUMOR_peak_52593	chr2	46926670	46926771	+	4.67313	NA	intron (NM_144949, intron 1 of 1)	CpG	371	NM_144949	9655	Hs.468426	NM_014011	HPRD:06159	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
19-PTNLD28-TUMOR_peak_93293	chr7	73868071	73868232	+	4.67313	NA	promoter-TSS (NM_016328)	promoter-TSS (NM_016328)	31	NM_001199207	9569	Hs.647056	NM_005685	HPRD:08379	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_53395	chr2	71228352	71228460	+	4.67076	NA	Intergenic	Intergenic	-6405	NM_144582	113419	Hs.516087	NM_144582	HPRD:15491	TEX261	TEG-261	testis expressed 261	protein-coding
19-PTNLD28-TUMOR_peak_77788	chr4	157700010	157700256	+	4.67076	NA	intron (NM_016205, intron 3 of 5)	intron (NM_016205, intron 3 of 5)	192413	NM_016205	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_80913	chr5	79405867	79405972	+	4.67076	NA	Intergenic	Intergenic	-26431	NR_109930	101929215		NR_109930	ENSG00000249825	CTD-2201I18.1	-	uncharacterized LOC101929215	ncRNA
19-PTNLD28-TUMOR_peak_52750	chr2	51259382	51259483	+	4.67076	NA	5' UTR (NM_004801, exon 1 of 22)	5' UTR (NM_004801, exon 1 of 22)	242	NM_004801	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_9974	chr1	212472171	212472299	+	4.67076	NA	intron (NM_006243, intron 1 of 12)	SVA_E|Other|Other	-2913	NM_001199756	5525	Hs.744012	NM_006243	HPRD:03384	PPP2R5A	B56A|PR61A	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
19-PTNLD28-TUMOR_peak_60650	chr20	33137326	33137633	+	4.67076	NA	intron (NM_181509, intron 1 of 4)	MER66A|LTR|ERV1	2791	NM_181509	84557	Hs.632273	NM_032514	HPRD:03144	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_106880	chr9	140615618	140615781	+	4.67076	NA	intron (NM_001145527, intron 3 of 15)	C-rich|Low_complexity|Low_complexity	-41775	NR_024341	643210	Hs.721002	NM_001039765		EHMT1-IT1	-	EHMT1 intronic transcript 1	ncRNA
19-PTNLD28-TUMOR_peak_10103	chr1	219632973	219633362	+	4.67076	NA	Intergenic	Intergenic	284856	NM_001300772	127018	Hs.657617	NM_138794	HPRD:14335	LYPLAL1	-	lysophospholipase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_17857	chr11	32553154	32553327	+	4.67076	NA	Intergenic	Intergenic	-52073	NM_006360	10480	Hs.502244	NM_006360		EIF3M	B5|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3, subunit M	protein-coding
19-PTNLD28-TUMOR_peak_57076	chr2	175594938	175595073	+	4.67076	NA	Intergenic	CpG	34195	NM_001039523	1134	Hs.434479	NM_000079	HPRD:00007	CHRNA1	ACHRA|ACHRD|CHRNA|CMS2A|FCCMS|SCCMS	cholinergic receptor, nicotinic, alpha 1 (muscle)	protein-coding
19-PTNLD28-TUMOR_peak_73433	chr3	194728607	194728737	+	4.67076	NA	Intergenic	Intergenic	-86645	NR_104188	100874528	Hs.581659	NR_104188		XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8718	chr1	183049657	183049745	+	4.67076	NA	intron (NM_002293, intron 1 of 27)	intron (NM_002293, intron 1 of 27)	57106	NM_002293	3915	Hs.609663	NM_002293	HPRD:01030	LAMC1	LAMB2	laminin, gamma 1 (formerly LAMB2)	protein-coding
19-PTNLD28-TUMOR_peak_73776	chr4	808211	808299	+	4.67076	NA	intron (NM_006651, intron 2 of 3)	AluSx1|SINE|Alu	11690	NM_006651	10815	Hs.478930	NM_006651	HPRD:09233	CPLX1	CPX-I|CPX1	complexin 1	protein-coding
19-PTNLD28-TUMOR_peak_39872	chr17	5140996	5141096	+	4.67076	NA	Intergenic	Intergenic	-2891	NM_001271842	388325	Hs.462080	NM_207103	HPRD:18267	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
19-PTNLD28-TUMOR_peak_103870	chr9	75805860	75805948	+	4.67076	NA	Intergenic	L1M5|LINE|L1	39123	NM_000700	301	Hs.494173	NM_000700	HPRD:01060	ANXA1	ANX1|LPC1	annexin A1	protein-coding
19-PTNLD28-TUMOR_peak_61471	chr20	45599920	45600210	+	4.67076	NA	intron (NM_005244, intron 1 of 15)	MLT1J|LTR|ERVL-MaLR	76802	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_74833	chr4	25989919	25990014	+	4.67076	NA	Intergenic	Intergenic	74152	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52	small integral membrane protein 20	protein-coding
19-PTNLD28-TUMOR_peak_60039	chr20	18485286	18485485	+	4.66940	NA	Intergenic	CpG	-2803	NM_032985	10483	Hs.369373	NM_006363	HPRD:11543	SEC23B	CDA-II|CDAII|CDAN2|HEMPAS	Sec23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_70951	chr3	133667903	133668058	+	4.66831	NA	intron (NM_005630, intron 6 of 13)	intron (NM_005630, intron 6 of 13)	-19324	NM_025041	80111	Hs.287691	NM_025041	HPRD:07981	C3orf36	-	chromosome 3 open reading frame 36	protein-coding
19-PTNLD28-TUMOR_peak_49330	chr19	45251281	45251390	+	4.66679	NA	promoter-TSS (NM_005178)	promoter-TSS (NM_005178)	-643	NM_005178	602	Hs.31210	NM_005178	HPRD:00179	BCL3	BCL4|D19S37	B-cell CLL/lymphoma 3	protein-coding
19-PTNLD28-TUMOR_peak_34609	chr15	76196659	76196787	+	4.66499	NA	intron (NR_037623, intron 1 of 5)	CpG	523	NR_037623	26263	Hs.591115	NM_012170	HPRD:16437	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
19-PTNLD28-TUMOR_peak_101320	chr8	139349416	139349504	+	4.66499	NA	intron (NM_015912, intron 2 of 19)	L1PA4|LINE|L1	159605	NM_015912	51059	Hs.126024	NM_015912	HPRD:14230	FAM135B	C8ORFK32	family with sequence similarity 135, member B	protein-coding
19-PTNLD28-TUMOR_peak_77693	chr4	154266349	154266458	+	4.66499	NA	intron (NM_032117, intron 1 of 7)	intron (NM_032117, intron 1 of 7)	602	NM_001253861	84057	Hs.294088	NM_032117	HPRD:17025	MND1	GAJ	meiotic nuclear divisions 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_91191	chr7	6682843	6683005	+	4.66499	NA	intron (NM_001278559, intron 6 of 8)	intron (NM_001278559, intron 6 of 8)	5971	NM_001278559	100131017	Hs.112668	NM_001278559		ZNF316	ENST00000305834|MZF-3	zinc finger protein 316	protein-coding
19-PTNLD28-TUMOR_peak_88938	chr6	105851476	105851564	+	4.66499	NA	promoter-TSS (NM_002726)	promoter-TSS (NM_002726)	-521	NM_002726	5550	Hs.436564	NM_002726	HPRD:02673	PREP	PE|PEP	prolyl endopeptidase	protein-coding
19-PTNLD28-TUMOR_peak_57779	chr2	201731706	201731860	+	4.66497	NA	Intergenic	MER50|LTR|ERV1	-2316	NR_027856	1195	Hs.433732	NM_004071	HPRD:09058	CLK1	CLK|CLK/STY|STY	CDC-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_94721	chr7	106125130	106125218	+	4.66497	NA	Intergenic	Intergenic	176460	NM_175884	168455	Hs.29692	NM_175884	HPRD:08202	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
19-PTNLD28-TUMOR_peak_26032	chr12	106640810	106640902	+	4.66324	NA	intron (NM_006825, intron 1 of 1)	intron (NM_006825, intron 1 of 1)	857	NM_006825	10970	Hs.74368	NM_006825	HPRD:16717	CKAP4	CLIMP-63|ERGIC-63|p63	cytoskeleton-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_82645	chr5	140011772	140011892	+	4.66324	NA	exon (NM_001174105, exon 3 of 3)	exon (NM_001174105, exon 3 of 3)	1203	NM_000591	929	Hs.163867	NM_000591	HPRD:01151	CD14	-	CD14 molecule	protein-coding
19-PTNLD28-TUMOR_peak_42161	chr17	47913263	47913477	+	4.66233	NA	Intergenic	L2|LINE|L2	-9902	NM_001242791	729220	Hs.434138	NM_001242791		FLJ45513	-	uncharacterized LOC729220	protein-coding
19-PTNLD28-TUMOR_peak_21864	chr11	124711285	124711373	+	4.66233	NA	Intergenic	L1MC5|LINE|L1	-23976	NM_022370	64221	Hs.435621	NM_022370	HPRD:10554	ROBO3	HGPPS|HGPS|RBIG1|RIG1	roundabout, axon guidance receptor, homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_36702	chr16	20890513	20890684	+	4.66233	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-20959	NM_020424	57149	Hs.745012	NM_020424	HPRD:14254	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97008	chr8	7994754	7994922	+	4.66233	NA	Intergenic	Intergenic	-48227	NR_031689	100302186		NR_031689	miRBase:MI0006423	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3	microRNA 548i-3	ncRNA
19-PTNLD28-TUMOR_peak_82587	chr5	139422175	139422340	+	4.66233	NA	exon (NM_013981, exon 1 of 10)	exon (NM_013981, exon 1 of 10)	627	NM_004883	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_23515	chr12	27483940	27484101	+	4.66203	NA	Intergenic	Intergenic	-1767	NM_001248005	56938	Hs.445447	NM_020183		ARNTL2	BMAL2|CLIF|MOP9|PASD9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding
19-PTNLD28-TUMOR_peak_43398	chr17	73236210	73236339	+	4.66203	NA	intron (NM_001291642, intron 9 of 13)	intron (NM_001291642, intron 9 of 13)	21468	NM_014001	23163	Hs.87726	NM_014001	HPRD:10443	GGA3	-	golgi-associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_43963	chr17	79393268	79393381	+	4.66203	NA	intron (NM_001291324, intron 1 of 27)	intron (NM_001291324, intron 1 of 27)	-18746	NR_039894	100616294		NR_039894	miRBase:MI0017378	MIR4740	-	microRNA 4740	ncRNA
19-PTNLD28-TUMOR_peak_96047	chr7	143105518	143105701	+	4.66021	NA	intron (NR_033897, intron 1 of 4)	intron (NR_033897, intron 1 of 4)	376	NM_005232	2041	Hs.89839	NM_005232	HPRD:01554	EPHA1	EPH|EPHT|EPHT1	EPH receptor A1	protein-coding
19-PTNLD28-TUMOR_peak_47203	chr19	10402078	10402214	+	4.65685	NA	intron (NM_003259, intron 2 of 10)	CpG-12884	1491	NM_003259	7087	Hs.465862	NM_003259	HPRD:03509	ICAM5	TLCN|TLN	intercellular adhesion molecule 5, telencephalin	protein-coding
19-PTNLD28-TUMOR_peak_15097	chr10	99174689	99174794	+	4.65602	NA	Intergenic	AluJb|SINE|Alu	-11286	NM_002629	5223	Hs.632918	NM_002629	HPRD:01392	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_73758	chr4	675604	675780	+	4.65602	NA	TTS (NM_001294341)	TTS (NM_001294341)	3981	NM_002477	4636	Hs.410970	NM_002477	HPRD:01182	MYL5	-	myosin, light chain 5, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_62	chr1	740157	740282	+	4.65602	NA	Intergenic	Intergenic	-12532	NR_103536	400728	Hs.568078	NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87, member B	ncRNA
19-PTNLD28-TUMOR_peak_26821	chr12	122595659	122595747	+	4.65602	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-56563	NM_152759	254050	Hs.374856	NM_152759	HPRD:14601	LRRC43	-	leucine rich repeat containing 43	protein-coding
19-PTNLD28-TUMOR_peak_52181	chr2	38097099	38097201	+	4.65602	NA	intron (NR_110012, intron 1 of 3)	intron (NR_110012, intron 1 of 3)	5856	NR_110012	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
19-PTNLD28-TUMOR_peak_10199	chr1	221899213	221899340	+	4.65602	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	10966	NR_111939	11221	Hs.497822	NM_007207	HPRD:12320	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
19-PTNLD28-TUMOR_peak_25015	chr12	65220158	65220353	+	4.65602	NA	intron (NM_015279, intron 1 of 11)	intron (NM_015279, intron 1 of 11)	1903	NM_015279	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family, member 30	protein-coding
19-PTNLD28-TUMOR_peak_1315	chr1	21503121	21503209	+	4.65602	NA	intron (NM_001198802, intron 1 of 34)	CpG	216	NM_001198802	8672	Hs.467084	NM_003760	HPRD:06802	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma, 3	protein-coding
19-PTNLD28-TUMOR_peak_90901	chr7	2344527	2344619	+	4.65550	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	9526	NM_013321	29886	Hs.584900	NM_013321	HPRD:11592	SNX8	Mvp1	sorting nexin 8	protein-coding
19-PTNLD28-TUMOR_peak_34666	chr15	78113878	78113994	+	4.64707	NA	promoter-TSS (NM_001301186)	promoter-TSS (NM_001301186)	-694	NM_001301186	84894	Hs.656765	NM_032808	HPRD:14322	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_61713	chr20	48329933	48330073	+	4.64707	NA	intron (NM_004776, intron 1 of 8)	CpG	418	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_99315	chr8	81399610	81399744	+	4.64707	NA	exon (NM_001105539, exon 1 of 6)	exon (NM_001105539, exon 1 of 6)	1229	NM_001105539	65986	Hs.591868	NM_023929	HPRD:15689	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
19-PTNLD28-TUMOR_peak_103214	chr9	42367660	42367762	+	4.64707	NA	promoter-TSS (NM_001012419).3	promoter-TSS (NM_001012419).3	-592	NM_001012421	441430	Hs.632663	NM_001012421	HPRD:18652	ANKRD20A2	-	ankyrin repeat domain 20 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_43639	chr17	75278805	75279027	+	4.64484	NA	intron (NM_001293695, intron 1 of 10)	intron (NM_001293695, intron 1 of 10)	1424	NM_001293695	10801	Hs.440932	NM_006640	HPRD:10360	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
19-PTNLD28-TUMOR_peak_34572	chr15	75742695	75742783	+	4.64468	NA	intron (NM_001145357, intron 1 of 20)	intron (NM_001145357, intron 1 of 20)	1187	NM_015477	25942	Hs.513039	NM_015477	HPRD:09690	SIN3A	-	SIN3 transcription regulator family member A	protein-coding
19-PTNLD28-TUMOR_peak_104408	chr9	91148976	91149091	+	4.64339	NA	promoter-TSS (NM_145283)	promoter-TSS (NM_145283)	-983	NM_145283	158046	Hs.734507	NM_145283	HPRD:12938	NXNL2	C9orf121|RDCVF2	nucleoredoxin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_65699	chr22	42016327	42016451	+	4.64017	NA	promoter-TSS (NM_001469)	promoter-TSS (NM_001469)	672	NM_015704	27351	Hs.570455	NM_015704	HPRD:18590	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|PPPDE2	desumoylating isopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_105035	chr9	103791601	103791755	+	4.64017	NA	intron (NM_207299, intron 1 of 7)	CpG	647	NM_207299	54886	Hs.382683	NM_017753	HPRD:17906	LPPR1	PRG-3	lipid phosphate phosphatase-related protein type 1	protein-coding
19-PTNLD28-TUMOR_peak_106743	chr9	139333170	139333482	+	4.64017	NA	exon (NM_019892, exon 1 of 10)	exon (NM_019892, exon 1 of 10)	930	NM_019892	56623	Hs.120998	NM_019892	HPRD:17151	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV	inositol polyphosphate-5-phosphatase, 72 kDa	protein-coding
19-PTNLD28-TUMOR_peak_54194	chr2	95724977	95725065	+	4.64017	NA	Intergenic	Intergenic	33621	NM_022438	4118	Hs.80395	NM_002371	HPRD:01789	MAL	-	mal, T-cell differentiation protein	protein-coding
19-PTNLD28-TUMOR_peak_15293	chr10	103542699	103542848	+	4.64017	NA	intron (NM_006993, intron 1 of 5)	CpG	397	NM_006993	10360	Hs.90691	NM_006993	HPRD:07346	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
19-PTNLD28-TUMOR_peak_17654	chr11	22550135	22550272	+	4.63744	NA	Intergenic	L1PA3|LINE|L1	-36638	NR_120583	102723378	Hs.374255	NR_120583		LINC01495	-	long intergenic non-protein coding RNA 1495	ncRNA
19-PTNLD28-TUMOR_peak_100951	chr8	131125503	131125600	+	4.63744	NA	intron (NM_018482, intron 23 of 29)	L2c|LINE|L2	-28537	NR_045385	100507117	Hs.106015	NR_045385		ASAP1-IT2	-	ASAP1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90998	chr7	3919920	3920149	+	4.63744	NA	intron (NM_152744, intron 5 of 44)	intron (NM_152744, intron 5 of 44)	-249283	NM_001079653	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_93801	chr7	87105070	87105266	+	4.63744	NA	promoter-TSS (NM_018850)	promoter-TSS (NM_018850)	-149	NM_018850	5244	Hs.654403	NM_000443	HPRD:01371	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding
19-PTNLD28-TUMOR_peak_40234	chr17	12645446	12645575	+	4.63744	NA	intron (NM_001146312, intron 7 of 13)	intron (NM_001146312, intron 7 of 13)	-36058	NR_104605	101928418	Hs.620346	NR_104605	ENSG00000227274	LOC101928418	-	uncharacterized LOC101928418	ncRNA
19-PTNLD28-TUMOR_peak_14928	chr10	94448965	94449301	+	4.63744	NA	promoter-TSS (NM_002729)	promoter-TSS (NM_002729)	-548	NM_002729	3087	Hs.118651	NM_002729		HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
19-PTNLD28-TUMOR_peak_51163	chr2	11878765	11878861	+	4.63744	NA	intron (NM_001261429, intron 1 of 9)	L1MEc|LINE|L1	-7909	NM_145693	23175	Hs.467740	NM_145693	HPRD:09271	LPIN1	PAP1	lipin 1	protein-coding
19-PTNLD28-TUMOR_peak_55384	chr2	121435908	121436059	+	4.63744	NA	Intergenic	Intergenic	-118884	NM_005270	2736	Hs.111867	NM_005270	HPRD:01312	GLI2	HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_103909	chr9	77850684	77850825	+	4.63744	NA	Intergenic	LTR18A|LTR|ERVL	147356	NM_012383	26578	Hs.494192	NM_012383	HPRD:17808	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
19-PTNLD28-TUMOR_peak_83827	chr5	169571314	169571739	+	4.63744	NA	Intergenic	Intergenic	38609	NM_144769	2299	Hs.87236	NM_012188	HPRD:03057	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding
19-PTNLD28-TUMOR_peak_452	chr1	7586684	7586772	+	4.63744	NA	intron (NM_015215, intron 6 of 22)	intron (NM_015215, intron 6 of 22)	-244601	NM_004781	9341	Hs.66708	NM_004781	HPRD:04711	VAMP3	CEB	vesicle-associated membrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_4870	chr1	92317347	92317463	+	4.63744	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	34431	NM_003243	7049	Hs.482390	NM_003243	HPRD:02846	TGFBR3	BGCAN|betaglycan	transforming growth factor, beta receptor III	protein-coding
19-PTNLD28-TUMOR_peak_25149	chr12	68574813	68575020	+	4.63744	NA	Intergenic	LTR33B|LTR|ERVL	-21395	NM_000619	3458	Hs.856	NM_000619	HPRD:00957	IFNG	IFG|IFI	interferon, gamma	protein-coding
19-PTNLD28-TUMOR_peak_34005	chr15	65321973	65322061	+	4.63744	NA	promoter-TSS (NM_139242)	promoter-TSS (NM_139242)	-40	NM_139242	123263	Hs.531615	NM_139242		MTFMT	COXPD15|FMT1	mitochondrial methionyl-tRNA formyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_97750	chr8	26047849	26048080	+	4.62769	NA	Intergenic	CpG	-101043	NM_002717	5520	Hs.146339	NM_002717	HPRD:09223	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
19-PTNLD28-TUMOR_peak_40182	chr17	10002968	10003065	+	4.62769	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-62952	NM_201432	8522	Hs.462214	NM_003644	HPRD:16011	GAS7	MLL/GAS7	growth arrest-specific 7	protein-coding
19-PTNLD28-TUMOR_peak_35115	chr15	89447978	89448452	+	4.62769	NA	intron (NM_001114614, intron 5 of 6)	intron (NM_001114614, intron 5 of 6)	8448	NM_005928	4240	Hs.3745	NM_005928	HPRD:03789	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule-EGF factor 8 protein	protein-coding
19-PTNLD28-TUMOR_peak_20985	chr11	107436014	107436139	+	4.62769	NA	intron (NM_001301010, intron 1 of 11)	intron (NM_001301010, intron 1 of 11)	385	NM_138775	91801	Hs.503763	NM_138775	HPRD:14287	ALKBH8	ABH8	alkB, alkylation repair homolog 8 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_45612	chr18	45969298	45969386	+	4.62769	NA	Intergenic	Intergenic	-96085	NM_014772	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_66533	chr3	10328728	10328816	+	4.62769	NA	intron (NM_001134946, intron 1 of 2)	intron (NM_001134946, intron 1 of 2)	2669	NR_026829	84657	Hs.302131	NM_001039102	ENSG00000231177	LINC00852	C3orf42|GHRL-AS2|GHRLOS2|NAG73	long intergenic non-protein coding RNA 852	ncRNA
19-PTNLD28-TUMOR_peak_43961	chr17	79367475	79367979	+	4.62769	NA	Intergenic	CpG	-5794	NM_001291324	57597	Hs.514580	NM_024696	ENSG00000171282	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
19-PTNLD28-TUMOR_peak_107520	chrX	9982769	9982936	+	4.62769	NA	promoter-TSS (NM_015691)	promoter-TSS (NM_015691)	-943	NM_015691	55841	Hs.527524	NM_015691	HPRD:11136	WWC3	BM042	WWC family member 3	protein-coding
19-PTNLD28-TUMOR_peak_75849	chr4	78741095	78741264	+	4.62095	NA	promoter-TSS (NM_144571)	promoter-TSS (NM_144571)	-635	NM_144571	246175	Hs.592519	NM_144571	HPRD:10841	CNOT6L	CCR4b	CCR4-NOT transcription complex, subunit 6-like	protein-coding
19-PTNLD28-TUMOR_peak_49567	chr19	47634671	47634992	+	4.61967	NA	intron (NR_027280, intron 1 of 8)	intron (NR_027280, intron 1 of 8)	716	NR_027280	10055	Hs.515500	NM_005500	HPRD:18010	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_51884	chr2	29339337	29339460	+	4.61953	NA	intron (NM_024692, intron 1 of 15)	intron (NM_024692, intron 1 of 15)	1106	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_52644	chr2	47403544	47403636	+	4.61953	NA	5' UTR (NM_001743, exon 1 of 6)	5' UTR (NM_001743, exon 1 of 6)	150	NM_001743	805	Hs.468442	NM_001743	HPRD:00242	CALM2	CAMII|PHKD|PHKD2	calmodulin 2 (phosphorylase kinase, delta)	protein-coding
19-PTNLD28-TUMOR_peak_6565	chr1	148854174	148854262	+	4.61953	NA	intron (NR_104217, intron 2 of 17)	CpG	-47627	NR_111001	1818	Hs.568236	NR_111001		DRD5P2	-	dopamine receptor D5 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_42975	chr17	63515781	63515898	+	4.61862	NA	Intergenic	Intergenic	41901	NM_004655	8313	Hs.156527	NM_004655	HPRD:04935	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19-PTNLD28-TUMOR_peak_49528	chr19	47249641	47249729	+	4.61862	NA	promoter-TSS (NM_001039877)	promoter-TSS (NM_001039877)	35	NM_013403	29888	Hs.631590	NM_013403	HPRD:18125	STRN4	ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_7393	chr1	157124289	157124382	+	4.61862	NA	Intergenic	Intergenic	-15952	NM_001145312	2117	Hs.105636	NM_005240	HPRD:01282	ETV3	METS|PE-1|PE1|bA110J1.4	ets variant 3	protein-coding
19-PTNLD28-TUMOR_peak_25769	chr12	98910265	98910376	+	4.61862	NA	promoter-TSS (NR_027157)	promoter-TSS (NR_027157)	-316	NR_027157	100128191	Hs.594042	NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35812	chr16	2524998	2525155	+	4.61862	NA	promoter-TSS (NM_001199107)	promoter-TSS (NM_001199107)	-71	NM_001199107	57465	Hs.353087	NM_020705	ENSG00000162065	TBC1D24	DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6	TBC1 domain family, member 24	protein-coding
19-PTNLD28-TUMOR_peak_107111	chrUn_gl000220	117211	117326	+	4.61609	NA	non-coding (NR_046235, exon 1 of 1)	non-coding (NR_046235, exon 1 of 1)	5243	NR_003285	100008587		NR_003285		RNA5-8S5	RN5-8S1	RNA, 5.8S ribosomal 5	rRNA
19-PTNLD28-TUMOR_peak_53213	chr2	67487105	67487206	+	4.61574	NA	intron (NR_110564, intron 1 of 4)	intron (NR_110564, intron 1 of 4)	-44704	NR_038844	644838	Hs.145561	NR_038844	ENSG00000236780	LOC644838	-	uncharacterized LOC644838	ncRNA
19-PTNLD28-TUMOR_peak_70186	chr3	122747176	122747573	+	4.61574	NA	promoter-TSS (NM_001256348)	promoter-TSS (NM_001256348)	78	NR_046079	54437	Hs.210870	NM_018987	HPRD:15322	SEMA5B	SEMAG|SemG	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding
19-PTNLD28-TUMOR_peak_9665	chr1	205649763	205649963	+	4.61574	NA	promoter-TSS (NM_033102)	promoter-TSS (NM_033102)	-233	NM_033102	85414	Hs.278695	NM_033102	HPRD:16312	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45, member 3	protein-coding
19-PTNLD28-TUMOR_peak_67172	chr3	23969126	23969431	+	4.61574	NA	Intergenic	Intergenic	10082	NM_001253380	6138	Hs.381219	NM_002948	HPRD:16043	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10	ribosomal protein L15	protein-coding
19-PTNLD28-TUMOR_peak_95621	chr7	136555270	136555358	+	4.61574	NA	intron (NM_001006632, intron 2 of 2)	CpG	1321	NM_001006628	1129	Hs.535891	NM_000739	HPRD:00328	CHRM2	HM2	cholinergic receptor, muscarinic 2	protein-coding
19-PTNLD28-TUMOR_peak_31222	chr14	74003713	74003815	+	4.61574	NA	promoter-TSS (NM_001037161)	promoter-TSS (NM_001037161)	-164	NM_001037161	641371	Hs.446685	NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
19-PTNLD28-TUMOR_peak_96366	chr7	150953660	150953794	+	4.61294	NA	intron (NM_001003802, intron 2 of 13)	L2a|LINE|L2	-7978	NM_001003801	6604	Hs.647067	NM_003078	HPRD:03440	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
19-PTNLD28-TUMOR_peak_83700	chr5	167181809	167181966	+	4.60793	NA	intron (NM_001122679, intron 2 of 28)	intron (NM_001122679, intron 2 of 28)	470044	NM_001122679	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2	teneurin transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_45413	chr18	42259320	42259408	+	4.60793	NA	promoter-TSS (NM_001130110)	promoter-TSS (NM_001130110)	-774	NM_001130110	26040	Hs.435458	NM_015559	HPRD:10224	SETBP1	SEB	SET binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2744	chr1	40839704	40839919	+	4.60793	NA	promoter-TSS (NM_001198978)	promoter-TSS (NM_001198978)	433	NM_022733	64744	Hs.15200	NM_022733	HPRD:12442	SMAP2	SMAP1L	small ArfGAP2	protein-coding
19-PTNLD28-TUMOR_peak_85880	chr6	21594699	21594894	+	4.60693	NA	exon (NM_003107, exon 1 of 1)	exon (NM_003107, exon 1 of 1)	824	NM_003107	6659	Hs.643910	NM_003107	HPRD:01695	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
19-PTNLD28-TUMOR_peak_84923	chr6	3750908	3751002	+	4.60442	NA	intron (NM_183373, intron 1 of 4)	CpG	1291	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80680	chr5	73502399	73502594	+	4.60429	NA	Intergenic	Intergenic	101654	NR_105009	102503429	Hs.519391	NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
19-PTNLD28-TUMOR_peak_53505	chr2	73949039	73949136	+	4.60429	NA	Intergenic	L1PA3|LINE|L1	15430	NM_016058	51002	Hs.157401	NM_016058	ENSG00000144034	TPRKB	-	TP53RK binding protein	protein-coding
19-PTNLD28-TUMOR_peak_82663	chr5	140214357	140214602	+	4.60429	NA	exon (NM_031852, exon 1 of 1)	exon (NM_031852, exon 1 of 1)	510	NM_018910	56141	Hs.199343	NM_018910	HPRD:07325	PCDHA7	CNR4|CNRN4|CNRS4|CRNR4|PCDH-ALPHA7	protocadherin alpha 7	protein-coding
19-PTNLD28-TUMOR_peak_21628	chr11	120081466	120081584	+	4.60429	NA	promoter-TSS (NM_178507)	promoter-TSS (NM_178507)	-222	NM_178507	220323	Hs.445081	NM_178507		OAF	NS5ATP13TP2	OAF homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_61488	chr20	45833144	45833232	+	4.60429	NA	Intergenic	MIRb|SINE|MIR	37579	NR_037410	100500814		NR_037410		MIR3616	-	microRNA 3616	ncRNA
19-PTNLD28-TUMOR_peak_52250	chr2	39174416	39174515	+	4.60429	NA	intron (NM_001145451, intron 8 of 15)	intron (NM_001145451, intron 8 of 15)	13020	NR_028386	375196	Hs.659035	NR_028386		LOC375196	-	uncharacterized LOC375196	ncRNA
19-PTNLD28-TUMOR_peak_41359	chr17	38332729	38332827	+	4.59963	NA	Intergenic	Intergenic	-1464	NM_016339	51195	Hs.632254	NM_016339	HPRD:17954	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding
19-PTNLD28-TUMOR_peak_21283	chr11	114042205	114042340	+	4.59963	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	110984	NM_001018011	7704	Hs.591945	NM_006006	HPRD:11762	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
19-PTNLD28-TUMOR_peak_92111	chr7	39807836	39808029	+	4.59963	NA	intron (NR_026999, intron 2 of 11)	intron (NR_026999, intron 2 of 11)	34765	NR_026999	349114	Hs.414183	NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
19-PTNLD28-TUMOR_peak_97155	chr8	11306239	11306327	+	4.59963	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	17993	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_103495	chr9	67702292	67702562	+	4.59963	NA	Intergenic	LTR46|LTR|ERV1	-76696	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
19-PTNLD28-TUMOR_peak_16942	chr11	8040751	8040914	+	4.59963	NA	Intergenic	CpG	-2776	NR_125366	103581031	Hs.249366	NR_125366		CASC23	LINC01464	cancer susceptibility candidate 23 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_43230	chr17	70588854	70589070	+	4.59963	NA	promoter-TSS (NR_036488)	promoter-TSS (NR_036488)	-19	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_96728	chr7	157518430	157518569	+	4.59963	NA	intron (NM_130842, intron 11 of 21)	L1M2|LINE|L1	-128778	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
19-PTNLD28-TUMOR_peak_9724	chr1	206499512	206499871	+	4.59963	NA	Intergenic	Intergenic	-16509	NM_001271870	647135	Hs.497575	NM_001271870		SRGAP2B	SRGAP2L|SRGAP2P2	SLIT-ROBO Rho GTPase activating protein 2B	protein-coding
19-PTNLD28-TUMOR_peak_73558	chr3	195935056	195935227	+	4.59706	NA	intron (NM_001039617, intron 4 of 7)	C-rich|Low_complexity|Low_complexity	3159	NM_001039617	131540	Hs.111591	NM_144637	HPRD:15714	ZDHHC19	DHHC19	zinc finger, DHHC-type containing 19	protein-coding
19-PTNLD28-TUMOR_peak_109751	chrX	149743648	149743742	+	4.59706	NA	intron (NM_000252, intron 1 of 14)	intron (NM_000252, intron 1 of 14)	6648	NM_000252	4534	Hs.655056	NM_000252	HPRD:02331	MTM1	CNM|MTMX|XLMTM	myotubularin 1	protein-coding
19-PTNLD28-TUMOR_peak_9621	chr1	205345476	205345565	+	4.59689	NA	intron (NR_038425, intron 1 of 3)	L2c|LINE|L2	3140	NR_038425	284576	Hs.585440	NR_038425	ENSG00000226235	LEMD1-AS1	-	LEMD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_95224	chr7	129470903	129471012	+	4.59473	NA	3' UTR (NM_001202498, exon 7 of 7)	3' UTR (NM_001202498, exon 7 of 7)	-56103	NR_029615	406959		NR_029615	miRBase:MI0000273	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
19-PTNLD28-TUMOR_peak_22758	chr12	6536173	6536310	+	4.59434	NA	Intergenic	Intergenic	-17810	NM_001242	939	Hs.355307	NM_001242	HPRD:01723	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
19-PTNLD28-TUMOR_peak_47830	chr19	16607549	16607703	+	4.59317	NA	promoter-TSS (NM_145046)	promoter-TSS (NM_145046)	504	NM_001288834	84167	Hs.631627	NM_032207	HPRD:08641	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
19-PTNLD28-TUMOR_peak_34874	chr15	83034503	83034604	+	4.59136	NA	intron (NR_004847, intron 1 of 4)	intron (NR_004847, intron 1 of 4)	10712	NR_004847	100134869	Hs.735222	NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_7115	chr1	154820426	154820541	+	4.59136	NA	intron (NM_002249, intron 1 of 7)	intron (NM_002249, intron 1 of 7)	11855	NM_170782	3782	Hs.490765	NM_002249	HPRD:04283	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
19-PTNLD28-TUMOR_peak_41946	chr17	45371786	45371878	+	4.59136	NA	intron (NM_000212, intron 10 of 14)	intron (NM_000212, intron 10 of 14)	29147	NR_110881	102724508	Hs.661005	NR_110880		LOC102724508	-	uncharacterized LOC102724508	ncRNA
19-PTNLD28-TUMOR_peak_1263	chr1	20512525	20512640	+	4.59136	NA	promoter-TSS (NM_152376)	promoter-TSS (NM_152376)	4	NM_152376	127733	Hs.432503	NM_152376		UBXN10	UBXD3	UBX domain protein 10	protein-coding
19-PTNLD28-TUMOR_peak_22127	chr11	129716578	129716669	+	4.59136	NA	intron (NM_138788, intron 1 of 5)	L2a|LINE|L2	30882	NM_138788	120224	Hs.504301	NM_138788	HPRD:14020	TMEM45B	-	transmembrane protein 45B	protein-coding
19-PTNLD28-TUMOR_peak_17478	chr11	17756295	17756417	+	4.59136	NA	Intergenic	CpG	-1139	NM_001112741	3746	Hs.552896	NM_004976	HPRD:15936	KCNC1	KV3.1|KV4|NGK2	potassium voltage-gated channel, Shaw-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_24952	chr12	64061771	64061864	+	4.59136	NA	intron (NM_173812, intron 1 of 21)	intron (NM_173812, intron 1 of 21)	537	NM_173812	283417	Hs.533644	NM_173812	HPRD:08151	DPY19L2	SPATA34|SPGF9	dpy-19-like 2 (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_43362	chr17	72984243	72984397	+	4.59078	NA	intron (NM_014603, intron 1 of 4)	CpG	593	NM_014603	30850	Hs.78358	NM_014603	HPRD:11041	CDR2L	HUMPPA	cerebellar degeneration-related protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_78431	chr4	187648042	187648228	+	4.59078	NA	Intergenic	CpG-20331	-3148	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_58312	chr2	217529586	217529799	+	4.58878	NA	TTS (NM_000597)	TTS (NM_000597)	30580	NM_000599	3488	Hs.607212	NM_000599	HPRD:00901	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_7164	chr1	155101550	155101735	+	4.58176	NA	intron (NM_182685, intron 1 of 3)	intron (NM_182685, intron 1 of 3)	1293	NM_182685	1942	Hs.516664	NM_004428	HPRD:01858	EFNA1	B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4	ephrin-A1	protein-coding
19-PTNLD28-TUMOR_peak_96344	chr7	150811525	150811699	+	4.58103	NA	intron (NM_001042535, intron 1 of 8)	intron (NM_001042535, intron 1 of 8)	27813	NM_001042535	116988	Hs.647075	NM_031946	HPRD:16707	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_1366	chr1	22262429	22262598	+	4.58103	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	1277	NM_001291860	3339	Hs.562227	NM_005529	HPRD:00804	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
19-PTNLD28-TUMOR_peak_2511	chr1	37980111	37980199	+	4.58047	NA	intron (NR_073091, intron 1 of 7)	CpG	265	NM_001270876	64769	Hs.17118	NM_022756		MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1-associated factor 6	protein-coding
19-PTNLD28-TUMOR_peak_16669	chr11	2721873	2722116	+	4.58047	NA	promoter-TSS (NR_002728)	promoter-TSS (NR_002728)	-766	NR_002728	10984	Hs.604823	NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_16616	chr11	1883944	1884214	+	4.57524	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	-2316	NM_001242932	4046	Hs.56729	NM_002339	HPRD:01083	LSP1	WP34|pp52	lymphocyte-specific protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81908	chr5	125719076	125719245	+	4.57524	NA	intron (NM_001146319, intron 1 of 13)	intron (NM_001146319, intron 1 of 13)	23372	NM_001146319	65983	Hs.363558	NM_023927	HPRD:11402	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_24466	chr12	53646417	53646538	+	4.57524	NA	intron (NM_032889, intron 1 of 1)	intron (NM_032889, intron 1 of 1)	601	NM_032889	84975	Hs.654660	NM_032889	HPRD:14416	MFSD5	hsMOT2	major facilitator superfamily domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_82586	chr5	139421553	139421641	+	4.57524	NA	intron (NM_001184935, intron 1 of 7)	intron (NM_001184935, intron 1 of 7)	1287	NM_004883	9542	Hs.408515	NM_004883	HPRD:04821	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
19-PTNLD28-TUMOR_peak_19935	chr11	73034551	73034744	+	4.57524	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	14984	NM_014786	9828	Hs.533719	NM_014786	HPRD:10658	ARHGEF17	P164RHOGEF|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
19-PTNLD28-TUMOR_peak_61129	chr20	39994522	39994778	+	4.57524	NA	intron (NM_052846, intron 1 of 3)	CpG	848	NM_052846	90187	Hs.726525	NM_052846	HPRD:12335	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
19-PTNLD28-TUMOR_peak_98234	chr8	38033530	38033754	+	4.57454	NA	promoter-TSS (NM_004874)	promoter-TSS (NM_004874)	-464	NM_001204878	9530	Hs.194726	NM_004874	HPRD:04861	BAG4	BAG-4|SODD	BCL2-associated athanogene 4	protein-coding
19-PTNLD28-TUMOR_peak_45003	chr18	24129086	24129386	+	4.57454	NA	promoter-TSS (NM_001142730)	promoter-TSS (NM_001142730)	163	NM_001136205	284252	Hs.526630	NM_198991	HPRD:11059	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38844	chr16	78496293	78496553	+	4.57150	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	363113	NR_120435	51741	Hs.461453	NM_016373	HPRD:05501	WWOX	D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19-PTNLD28-TUMOR_peak_85552	chr6	14517313	14517457	+	4.57150	NA	Intergenic	Intergenic	-231700	NR_108096	102216342	Hs.563409	NR_108096		LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
19-PTNLD28-TUMOR_peak_60267	chr20	24819248	24819428	+	4.57150	NA	Intergenic	Intergenic	-110528	NM_003650	8530	Hs.143212	NM_003650	HPRD:04458	CST7	CMAP	cystatin F (leukocystatin)	protein-coding
19-PTNLD28-TUMOR_peak_33951	chr15	64274687	64274885	+	4.57150	NA	intron (NM_014326, intron 3 of 11)	intron (NM_014326, intron 3 of 11)	54313	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
19-PTNLD28-TUMOR_peak_45817	chr18	51884631	51884752	+	4.57150	NA	promoter-TSS (NM_173529)	promoter-TSS (NM_173529)	404	NM_001288981	162681	Hs.208701	NM_173529	HPRD:11334	C18orf54	LAS2	chromosome 18 open reading frame 54	protein-coding
19-PTNLD28-TUMOR_peak_84679	chr6	947236	947396	+	4.57150	NA	Intergenic	L2a|LINE|L2	78818	NR_110853	101927691	Hs.552556	NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
19-PTNLD28-TUMOR_peak_95207	chr7	129183198	129183286	+	4.57150	NA	Intergenic	AluY|SINE|Alu	40922	NM_001195243	100287482	Hs.178144	NM_001195243	ENSG00000240204	SMKR1	-	small lysine-rich protein 1	protein-coding
19-PTNLD28-TUMOR_peak_79798	chr5	49902666	49902948	+	4.57150	NA	Intergenic	Intergenic	-58926	NM_001178055	79668	Hs.369581	NM_024615	HPRD:07960	PARP8	ARTD16|pART16	poly (ADP-ribose) polymerase family, member 8	protein-coding
19-PTNLD28-TUMOR_peak_36026	chr16	4635596	4635684	+	4.57150	NA	intron (NM_001145011, intron 7 of 15)	intron (NM_001145011, intron 7 of 15)	29149	NM_001145011	342346	Hs.684212	NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_94796	chr7	107638578	107638749	+	4.57150	NA	intron (NM_002291, intron 4 of 33)	intron (NM_002291, intron 4 of 33)	5141	NM_002291	3912	Hs.650585	NM_002291	HPRD:01029	LAMB1	CLM|LIS5	laminin, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_67665	chr3	40661812	40661914	+	4.57150	NA	Intergenic	Intergenic	95494	NM_001098414	285268	Hs.19977	NM_198484		ZNF621	-	zinc finger protein 621	protein-coding
19-PTNLD28-TUMOR_peak_69558	chr3	106838791	106838912	+	4.57150	NA	intron (NR_028303, intron 2 of 3)	intron (NR_028303, intron 2 of 3)	120634	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
19-PTNLD28-TUMOR_peak_35147	chr15	89923138	89923290	+	4.57150	NA	intron (NR_015411, intron 2 of 6)	MIRb|SINE|MIR	1941	NR_015411	254559	Hs.136313	NR_015411		LINC00925	-	long intergenic non-protein coding RNA 925	ncRNA
19-PTNLD28-TUMOR_peak_31462	chr14	78173727	78173833	+	4.57150	NA	promoter-TSS (NM_031210)	promoter-TSS (NM_031210)	576	NM_006020	8846	Hs.94542	NM_006020	ENSG00000100601	ALKBH1	ABH|ABH1|ALKBH|alkB|hABH	alkB, alkylation repair homolog 1 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_62418	chr20	58146750	58146975	+	4.57150	NA	Intergenic	Intergenic	-5702	NM_001199505	116154	Hs.473218	NM_080672	HPRD:10571	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
19-PTNLD28-TUMOR_peak_35627	chr16	629547	629794	+	4.57150	NA	intron (NM_148920, intron 7 of 9)	CpG	-9687	NM_001172663	57799	Hs.459630	NM_021168	HPRD:10182	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_40084	chr17	8184529	8184636	+	4.57150	NA	Intergenic	MER21C|LTR|ERVL	-7387	NM_001177802	29098	Hs.408233	NM_016492	HPRD:06407	RANGRF	HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
19-PTNLD28-TUMOR_peak_97075	chr8	8864262	8864350	+	4.57150	NA	intron (NM_153332, intron 1 of 6)	intron (NM_153332, intron 1 of 6)	3992	NM_153332	90459	Hs.20000	NM_153332	HPRD:11784	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_88026	chr6	53447919	53448094	+	4.57150	NA	Intergenic	Intergenic	-9933	NR_110840	101927136	Hs.509788	NR_110840	ENSG00000231683	LOC101927136	-	uncharacterized LOC101927136	ncRNA
19-PTNLD28-TUMOR_peak_59313	chr2	242559576	242559767	+	4.57150	NA	intron (NM_015963, intron 2 of 5)	(TGAG)n|Simple_repeat|Simple_repeat	-2755	NM_001164356	51078	Hs.435759	NM_015963	HPRD:11630	THAP4	PP238	THAP domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_44342	chr18	3594979	3595160	+	4.56994	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	957	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_62609	chr20	62322249	62322389	+	4.56994	NA	intron (NM_001283009, intron 27 of 34)	intron (NM_001283009, intron 27 of 34)	-5685	NM_003823	8771	Hs.434878	NM_003823	HPRD:04527	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	tumor necrosis factor receptor superfamily, member 6b, decoy	protein-coding
19-PTNLD28-TUMOR_peak_13681	chr10	54790337	54790474	+	4.56952	NA	Intergenic	LTR30|LTR|ERV1	-258945	NM_000242	4153	Hs.499674	NM_000242	HPRD:01107	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose-binding lectin (protein C) 2, soluble	protein-coding
19-PTNLD28-TUMOR_peak_44731	chr18	14132056	14132144	+	4.56952	NA	intron (NM_145287, intron 1 of 2)	CpG	389	NM_145287	162655	Hs.352635	NM_145287		ZNF519	HsT2362	zinc finger protein 519	protein-coding
19-PTNLD28-TUMOR_peak_56582	chr2	160760779	160760919	+	4.56952	NA	intron (NM_002349, intron 1 of 34)	CpG	418	NM_001198760	100526664	Hs.153563	NM_001198759	ENSG00000248672	LY75-CD302	-	LY75-CD302 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_109097	chrX	106917884	106918010	+	4.56952	NA	Intergenic	Intergenic	41764	NM_001015881	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_104873	chr9	100319112	100319279	+	4.56952	NA	intron (NM_001166116, intron 4 of 9)	intron (NM_001166116, intron 4 of 9)	55274	NM_003275	7111	Hs.404289	NM_003275	HPRD:01838	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
19-PTNLD28-TUMOR_peak_43104	chr17	66098467	66098668	+	4.56952	NA	intron (NR_027418, intron 1 of 5)	CpG	871	NR_027418	100499466	Hs.591212	NR_027418		LINC00674	-	long intergenic non-protein coding RNA 674	ncRNA
19-PTNLD28-TUMOR_peak_48784	chr19	36912252	36912568	+	4.56726	NA	non-coding (NR_033748, exon 1 of 1)	non-coding (NR_033748, exon 1 of 1)	334	NR_033748	644189	Hs.608412	NR_033748		LOC644189	-	acyl-CoA thioesterase 4 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_68499	chr3	56502399	56502679	+	4.56726	NA	promoter-TSS (NM_015576)	promoter-TSS (NM_015576)	-148	NM_015576	26059	Hs.476389	NM_015576	HPRD:10810	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
19-PTNLD28-TUMOR_peak_14476	chr10	79625491	79625680	+	4.56726	NA	intron (NM_004747, intron 2 of 31)	intron (NM_004747, intron 2 of 31)	60763	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_15622	chr10	112327617	112327897	+	4.56726	NA	intron (NM_005445, intron 1 of 28)	CpG	308	NM_005445	9126	Hs.24485	NM_005445	HPRD:05829	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
19-PTNLD28-TUMOR_peak_25856	chr12	102872589	102872683	+	4.56726	NA	promoter-TSS (NM_001111284)	promoter-TSS (NM_001111284)	-207	NM_001111284	3479	Hs.160562	NM_000618	HPRD:00936	IGF1	IGF-I|IGF1A|IGFI	insulin-like growth factor 1 (somatomedin C)	protein-coding
19-PTNLD28-TUMOR_peak_33154	chr15	40442429	40442630	+	4.56726	NA	Intergenic	Intergenic	-10681	NM_001211	701	Hs.513645	NM_001211	HPRD:04176	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
19-PTNLD28-TUMOR_peak_46057	chr18	59558750	59558843	+	4.56726	NA	intron (NM_173557, intron 1 of 1)	intron (NM_173557, intron 1 of 1)	1508	NM_173557	220441	Hs.165062	NM_173557		RNF152	-	ring finger protein 152	protein-coding
19-PTNLD28-TUMOR_peak_36004	chr16	4443250	4443455	+	4.56723	NA	intron (NM_024535, intron 7 of 27)	intron (NM_024535, intron 7 of 27)	21503	NM_138440	114990	Hs.372579	NM_138440	HPRD:10587	VASN	SLITL2	vasorin	protein-coding
19-PTNLD28-TUMOR_peak_59376	chr20	327314	327511	+	4.56723	NA	promoter-TSS (NM_024958)	promoter-TSS (NM_024958)	42	NM_024958	80023	Hs.416024	NM_024958	HPRD:12791	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
19-PTNLD28-TUMOR_peak_84297	chr5	176778381	176778483	+	4.56723	NA	intron (NM_006816, intron 1 of 7)	intron (NM_006816, intron 1 of 7)	453	NM_006816	10960	Hs.75864	NM_006816	HPRD:17285	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose-binding 2	protein-coding
19-PTNLD28-TUMOR_peak_108822	chrX	77444810	77444924	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-49688	NM_015975	51616	Hs.592248	NM_015975	HPRD:06739	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa	protein-coding
19-PTNLD28-TUMOR_peak_84660	chr6	446938	447035	+	4.56640	NA	Intergenic	Intergenic	55247	NM_002460	3662	Hs.401013	NM_002460	HPRD:03543	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
19-PTNLD28-TUMOR_peak_45932	chr18	55924868	55924987	+	4.56640	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	36173	NM_001144966	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_3992	chr1	62722512	62722600	+	4.56640	NA	intron (NM_181712, intron 7 of 9)	intron (NM_181712, intron 7 of 9)	62082	NM_019079	54596	Hs.685462	NM_019079	HPRD:07708	L1TD1	ECAT11	LINE-1 type transposase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_25363	chr12	76138864	76138962	+	4.56640	NA	Intergenic	Intergenic	-233495	NM_007043	11103	Hs.645517	NM_007043	HPRD:11027	KRR1	HRB2|RIP-1	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_19700	chr11	69715489	69715645	+	4.56640	NA	Intergenic	Intergenic	-81375	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_9006	chr1	193494008	193494096	+	4.56640	NA	Intergenic	Intergenic	220177	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_107715	chrX	19114766	19114854	+	4.56640	NA	intron (NM_001079859, intron 1 of 27)	intron (NM_001079859, intron 1 of 27)	25945	NM_001184833	10149	Hs.146978	NM_005756	HPRD:04040	GPR64	EDDM6|HE6|TM7LN2	G protein-coupled receptor 64	protein-coding
19-PTNLD28-TUMOR_peak_53685	chr2	80801410	80801596	+	4.56640	NA	intron (NM_001282597, intron 13 of 18)	intron (NM_001282597, intron 13 of 18)	260999	NM_001282599	1496	Hs.167368	NM_004389	HPRD:00228	CTNNA2	CAP-R|CAPR|CT114|CTNR	catenin (cadherin-associated protein), alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_80289	chr5	65215787	65215875	+	4.56640	NA	Intergenic	Intergenic	-6551	NM_001253701	55914	Hs.591774	NM_018695	HPRD:06090	ERBB2IP	ERBIN|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_57066	chr2	175426129	175426217	+	4.56640	NA	3' UTR (NM_003387, exon 8 of 8)	3' UTR (NM_003387, exon 8 of 8)	-3373	NR_125730	103625684		NR_125730		RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
19-PTNLD28-TUMOR_peak_28326	chr13	53125750	53125838	+	4.56640	NA	intron (NR_002793, intron 15 of 23)	L1P1|LINE|L1	62666	NR_002793	220115	Hs.528448	NR_002793	ENSG00000198384	TPTE2P3	TPTEps1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_8828	chr1	184601964	184602067	+	4.56640	NA	Intergenic	MER5B|DNA|hAT-Charlie	122026	NM_025191	80267	Hs.523811	NM_025191	HPRD:10724	EDEM3	C1orf22	ER degradation enhancer, mannosidase alpha-like 3	protein-coding
19-PTNLD28-TUMOR_peak_21309	chr11	114509766	114509854	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-39390	NM_182495	120406	Hs.446760	NM_182495	HPRD:08055	NXPE2	FAM55B	neurexophilin and PC-esterase domain family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_25865	chr12	103163515	103163603	+	4.56640	NA	Intergenic	Intergenic	54618	NR_033855	283432	Hs.382110	NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
19-PTNLD28-TUMOR_peak_15542	chr10	108827694	108827837	+	4.56640	NA	intron (NM_001013031, intron 1 of 26)	intron (NM_001013031, intron 1 of 26)	96701	NM_001206572	114815	Hs.591915	NM_052918	HPRD:12098	SORCS1	hSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_65965	chr22	46422881	46422969	+	4.56640	NA	Intergenic	Intergenic	17823	NR_027036	100271722	Hs.528519	NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
19-PTNLD28-TUMOR_peak_1401	chr1	22706968	22707056	+	4.56640	NA	Intergenic	Intergenic	-71332	NM_014870	9923	Hs.418966	NM_014870	HPRD:11086	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
19-PTNLD28-TUMOR_peak_59438	chr20	1410904	1411122	+	4.56640	NA	Intergenic	MLT2B3|LTR|ERVL	-37197	NM_000801	2280	Hs.471933	NM_000801	HPRD:01741	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FK506 binding protein 1A, 12kDa	protein-coding
19-PTNLD28-TUMOR_peak_60151	chr20	21990542	21990759	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-44078	NR_038394	100270679	Hs.385748	NR_038394		LINC01432	-	long intergenic non-protein coding RNA 1432	ncRNA
19-PTNLD28-TUMOR_peak_8063	chr1	168501348	168501461	+	4.56640	NA	Intergenic	Intergenic	11831	NM_003175	6846	Hs.458346	NM_003175	HPRD:05317	XCL2	SCM-1b|SCM1B|SCYC2	chemokine (C motif) ligand 2	protein-coding
19-PTNLD28-TUMOR_peak_36393	chr16	13796502	13796745	+	4.56640	NA	Intergenic	Intergenic	-217391	NM_005236	2072	Hs.567265	NM_005236	HPRD:00594	ERCC4	ERCC11|FANCQ|RAD1|XPF	excision repair cross-complementation group 4	protein-coding
19-PTNLD28-TUMOR_peak_92464	chr7	47805017	47805250	+	4.56640	NA	intron (NR_038407, intron 2 of 2)	LTR39|LTR|ERV1	4059	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
19-PTNLD28-TUMOR_peak_56635	chr2	161492274	161492442	+	4.56640	NA	Intergenic	Intergenic	-142040	NM_002897	5937	Hs.470412	NM_002897	HPRD:03814	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_64674	chr22	23599285	23599450	+	4.56640	NA	intron (NM_004327, intron 2 of 22)	intron (NM_004327, intron 2 of 22)	-5587	NR_033408	26226	Hs.729589	NR_033408		FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_25551	chr12	90422595	90422727	+	4.56640	NA	Intergenic	Intergenic	319929	NR_028138	338758	Hs.601766	NR_028138	ENSG00000271614	LINC00936	-	long intergenic non-protein coding RNA 936	ncRNA
19-PTNLD28-TUMOR_peak_98746	chr8	53485295	53485383	+	4.56640	NA	Intergenic	SVA_A|Other|Other	-7318	NM_207413	389658	Hs.527111	NM_207413	HPRD:15623	FAM150A	UNQ9433	family with sequence similarity 150, member A	protein-coding
19-PTNLD28-TUMOR_peak_41299	chr17	37463166	37463254	+	4.56640	NA	intron (NM_032875, intron 2 of 14)	intron (NM_032875, intron 2 of 14)	-81170	NM_198993	342667	Hs.145068	NM_198993	HPRD:18113	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
19-PTNLD28-TUMOR_peak_68461	chr3	55162256	55162344	+	4.56640	NA	Intergenic	Intergenic	-200228	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_26049	chr12	106975383	106975482	+	4.56640	NA	intron (NR_040246, intron 1 of 3)	CpG	-1253	NM_213594	5992	Hs.388827	NM_002920	HPRD:04905	RFX4	NYD-SP10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding
19-PTNLD28-TUMOR_peak_109356	chrX	122648266	122648449	+	4.56640	NA	Intergenic	Intergenic	218547	NM_001081550	57187	Hs.149991	NM_020449	HPRD:02317	THOC2	CXorf3|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
19-PTNLD28-TUMOR_peak_62845	chr21	17476840	17476935	+	4.56640	NA	intron (NR_111005, intron 1 of 6)	AluY|SINE|Alu	33453	NR_111004	388815	Hs.473394	NM_001005732	HPRD:10746	MIR99AHG	C21orf34|C21orf35|FLJ38295|LINC00478|MONC	mir-99a-let-7c cluster host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_38901	chr16	79985332	79985420	+	4.56640	NA	Intergenic	Intergenic	156230	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_92144	chr7	41278733	41278821	+	4.56640	NA	Intergenic	Intergenic	137575	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA
19-PTNLD28-TUMOR_peak_28469	chr13	74622131	74622219	+	4.56640	NA	intron (NM_007249, intron 1 of 7)	MLT1J|LTR|ERVL-MaLR	85891	NM_007249	11278	Hs.373857	NM_007249	HPRD:06336	KLF12	AP-2rep|AP2REP	Kruppel-like factor 12	protein-coding
19-PTNLD28-TUMOR_peak_89426	chr6	129232251	129232339	+	4.56640	NA	intron (NM_001079823, intron 1 of 63)	L1PA3|LINE|L1	28009	NM_000426	3908	Hs.200841	NM_000426	HPRD:01125	LAMA2	LAMM	laminin, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_66302	chr3	5347171	5347259	+	4.56640	NA	Intergenic	Intergenic	-55275	NR_039953	100616334		NR_039953	miRBase:MI0017437	MIR4790	-	microRNA 4790	ncRNA
19-PTNLD28-TUMOR_peak_108304	chrX	49605404	49605704	+	4.56640	NA	Intergenic	Intergenic	11648	NM_007003	9506	Hs.441038	NM_007003	HPRD:02239	PAGE4	CT16.7|GAGE-9|GAGEC1|JM-27|PAGE-1|PAGE-4	P antigen family, member 4 (prostate associated)	protein-coding
19-PTNLD28-TUMOR_peak_41677	chr17	42112241	42112331	+	4.56640	NA	3' UTR (NM_152344, exon 6 of 6)	3' UTR (NM_152344, exon 6 of 6)	-19941	NM_032376	84336	Hs.514211	NM_032376	HPRD:14623	TMEM101	-	transmembrane protein 101	protein-coding
19-PTNLD28-TUMOR_peak_86338	chr6	28763725	28763832	+	4.56640	NA	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	67676	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_108882	chrX	87155401	87155548	+	4.56640	NA	Intergenic	Intergenic	382759	NM_057162	56062	Hs.49075	NM_019117	HPRD:02283	KLHL4	DKELCHL|KHL4	kelch-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_86196	chr6	27034654	27034804	+	4.56640	NA	Intergenic	Intergenic	-46644	NR_026776	100270746	Hs.590428	NR_026776		LOC100270746	-	uncharacterized LOC100270746	ncRNA
19-PTNLD28-TUMOR_peak_38011	chr16	57034591	57034684	+	4.56640	NA	Intergenic	Intergenic	-16349	NM_032206	84166	Hs.528836	NM_032206	HPRD:14831	NLRC5	CLR16.1|NOD27|NOD4	NLR family, CARD domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_31663	chr14	91012431	91012588	+	4.56640	NA	intron (NM_001010854, intron 19 of 19)	intron (NM_001010854, intron 19 of 19)	90935	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
19-PTNLD28-TUMOR_peak_92876	chr7	64913877	64913965	+	4.56640	NA	intron (NR_038378, intron 9 of 9)	intron (NR_038378, intron 9 of 9)	75209	NM_007139	168374	Hs.9521	NM_007139	HPRD:04919	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
19-PTNLD28-TUMOR_peak_48832	chr19	38010894	38010982	+	4.56640	NA	intron (NM_001013659, intron 2 of 7)	intron (NM_001013659, intron 2 of 7)	-12949	NR_110723	101927720	Hs.18070	NR_110723		LOC101927720	-	uncharacterized LOC101927720	ncRNA
19-PTNLD28-TUMOR_peak_105749	chr9	121358177	121358265	+	4.56640	NA	Intergenic	Intergenic	773518	NM_014618	1620	Hs.532316	NM_014618	HPRD:04181	BRINP1	DBC1|DBCCR1|FAM5A	bone morphogenetic protein/retinoic acid inducible neural-specific 1	protein-coding
19-PTNLD28-TUMOR_peak_85402	chr6	12119404	12119572	+	4.56640	NA	intron (NM_002114, intron 3 of 8)	LTR45C|LTR|ERV1	106764	NM_002114	3096	Hs.567284	NM_002114	HPRD:01925	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10052	chr1	215713339	215713481	+	4.56640	NA	Intergenic	LTR57-int|LTR|ERVL	-27325	NM_016121	51133	Hs.335139	NM_016121	HPRD:13766	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_28259	chr13	50819290	50819458	+	4.56640	NA	intron (NR_109974, intron 2 of 6)	MIR3|SINE|MIR	73220	NR_002183	145165	Hs.511834	NM_153290		ST13P4	FAM10A4|FAM10A4P	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4	pseudo
19-PTNLD28-TUMOR_peak_12628	chr10	29011208	29011296	+	4.56640	NA	Intergenic	CpG	-21327	NR_120652	101929218	Hs.224866	NR_120652		LINC01517	-	long intergenic non-protein coding RNA 1517	ncRNA
19-PTNLD28-TUMOR_peak_89407	chr6	127805439	127805570	+	4.56640	NA	intron (NM_001012279, intron 4 of 11)	intron (NM_001012279, intron 4 of 11)	-24969	NM_014702	9729	Hs.319247	NM_014702		KIAA0408	-	KIAA0408	protein-coding
19-PTNLD28-TUMOR_peak_31892	chr14	96064254	96064479	+	4.56640	NA	Intergenic	Intergenic	-53149	NR_028288	27004	Hs.510368	NM_012468	HPRD:05104	TCL6	TNG1|TNG2	T-cell leukemia/lymphoma 6 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_35514	chr15	101419927	101420118	+	4.56640	NA	5' UTR (NM_001293815, exon 1 of 10)	5' UTR (NM_001293815, exon 1 of 10)	125	NM_001293815	220	Hs.459538	NM_000693	HPRD:02713	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family, member A3	protein-coding
19-PTNLD28-TUMOR_peak_56156	chr2	145796072	145796246	+	4.56640	NA	intron (NR_033870, intron 3 of 4)	intron (NR_033870, intron 3 of 4)	370625	NR_033870	401014	Hs.742290	NR_033870		TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_11947	chr10	8145076	8145267	+	4.56640	NA	Intergenic	Intergenic	48504	NM_001002295	2625	Hs.524134	NM_002051	HPRD:00572	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_71780	chr3	152106631	152106719	+	4.56640	NA	intron (NM_207292, intron 2 of 8)	intron (NM_207292, intron 2 of 8)	-47896	NM_001123228	645843	Hs.632562	NM_001123228	ENSG00000221962	TMEM14E	-	transmembrane protein 14E	protein-coding
19-PTNLD28-TUMOR_peak_58748	chr2	230487388	230487513	+	4.56640	NA	intron (NM_139072, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	91836	NM_139072	92737	Hs.234074	NM_139072	HPRD:09531	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_32640	chr15	25966549	25966656	+	4.56640	NA	intron (NM_024490, intron 7 of 20)	intron (NM_024490, intron 7 of 20)	127370	NR_039865	100616474		NR_039865		MIR4715	-	microRNA 4715	ncRNA
19-PTNLD28-TUMOR_peak_85458	chr6	13114379	13114648	+	4.56640	NA	intron (NM_030948, intron 5 of 14)	intron (NM_030948, intron 5 of 14)	181305	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_107864	chrX	28984500	28984588	+	4.56640	NA	intron (NM_014271, intron 2 of 10)	intron (NM_014271, intron 2 of 10)	378863	NM_014271	11141	Hs.658912	NM_014271		IL1RAPL1	IL1R8|IL1RAPL|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_91695	chr7	25792703	25792813	+	4.56640	NA	Intergenic	Intergenic	87872	NR_046486	100873753		NR_046486		RNU6-16P	RNU6-16	RNA, U6 small nuclear 16, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_93666	chr7	80803167	80803474	+	4.56640	NA	Intergenic	Intergenic	-254653	NM_006379	10512	Hs.269109	NM_006379	HPRD:04034	SEMA3C	SEMAE|SemE	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
19-PTNLD28-TUMOR_peak_12572	chr10	27547741	27547942	+	4.56640	NA	Intergenic	CpG	-6606	NR_003525	387646	Hs.631829	NM_001006604	HPRD:17363	LRRC37A6P	-	leucine rich repeat containing 37, member A6, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_110303	chrY	19178372	19178460	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-434422	NR_028083	340618	Hs.434364	NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41, member A, Y-linked 1	ncRNA
19-PTNLD28-TUMOR_peak_105293	chr9	111806683	111806878	+	4.56640	NA	intron (NM_032012, intron 14 of 17)	intron (NM_032012, intron 14 of 17)	1798	NR_029506	407036		NR_029506		MIR32	MIRN32|hsa-mir-32|miR-32|miRNA32	microRNA 32	ncRNA
19-PTNLD28-TUMOR_peak_13729	chr10	60184131	60184269	+	4.56640	NA	Intergenic	L1MC4a|LINE|L1	39297	NM_001270782	7019	Hs.594250	NM_003201	HPRD:02702	TFAM	MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_53211	chr2	67285147	67285235	+	4.56640	NA	Intergenic	Intergenic	-28387	NR_110564	102800447	Hs.144196	NR_110564		LOC102800447	-	uncharacterized LOC102800447	ncRNA
19-PTNLD28-TUMOR_peak_88282	chr6	73196001	73196089	+	4.56640	NA	Intergenic	AluY|SINE|Alu	119613	NM_001168411	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_77654	chr4	153815894	153815982	+	4.56640	NA	intron (NM_001025593, intron 7 of 7)	intron (NM_001025593, intron 7 of 7)	-48197	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64980	chr22	29436852	29436940	+	4.56640	NA	intron (NM_032173, intron 2 of 8)	intron (NM_032173, intron 2 of 8)	-9432	NR_046851	100874123	Hs.674708	NR_046851	ENSG00000177993	ZNRF3-AS1	-	ZNRF3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_103183	chr9	41714099	41714187	+	4.56640	NA	Intergenic	Intergenic	-104599	NR_003528	401509	Hs.449445	NM_001032297	ENSG00000198416	ZNF658B	-	zinc finger protein 658B, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89373	chr6	126091381	126091557	+	4.56640	NA	Intergenic	SVA_C|Other|Other	-10838	NM_001199619	135112	Hs.171426	NM_181782	HPRD:14814	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
19-PTNLD28-TUMOR_peak_15665	chr10	113852284	113852428	+	4.56640	NA	Intergenic	Intergenic	91181	NM_001244949	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_88070	chr6	54443796	54443966	+	4.56640	NA	Intergenic	PABL_A|LTR|ERV1	-267688	NM_001010872	222584	Hs.152423	NM_001010872		FAM83B	C6orf143	family with sequence similarity 83, member B	protein-coding
19-PTNLD28-TUMOR_peak_57366	chr2	187085294	187085444	+	4.56640	NA	Intergenic	LTR16B2|LTR|ERVL	-134325	NR_110218	101927217	Hs.130011	NR_110218		LINC01473	-	long intergenic non-protein coding RNA 1473	ncRNA
19-PTNLD28-TUMOR_peak_28252	chr13	50678811	50678899	+	4.56640	NA	non-coding (NR_002605, exon 2 of 2)	non-coding (NR_002605, exon 2 of 2)	20822	NR_002612	8847	Hs.547964	NR_002612		DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_81179	chr5	93489878	93490009	+	4.56640	NA	intron (NM_001145678, intron 20 of 20)	intron (NM_001145678, intron 20 of 20)	-42539	NM_001163418	83989	Hs.600086	NM_032042	HPRD:13210	FAM172A	C5orf21	family with sequence similarity 172, member A	protein-coding
19-PTNLD28-TUMOR_peak_88908	chr6	102266019	102266141	+	4.56640	NA	intron (NM_021956, intron 8 of 15)	intron (NM_021956, intron 8 of 15)	419219	NM_021956	2898	Hs.98262	NM_021956	HPRD:00692	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate receptor, ionotropic, kainate 2	protein-coding
19-PTNLD28-TUMOR_peak_31524	chr14	81817147	81817354	+	4.56640	NA	intron (NM_001256430, intron 5 of 7)	intron (NM_001256430, intron 5 of 7)	76306	NM_033104	85439	Hs.14248	NM_033104	HPRD:10531	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
19-PTNLD28-TUMOR_peak_106506	chr9	134760854	134761006	+	4.56640	NA	intron (NM_001253881, intron 4 of 6)	intron (NM_001253881, intron 4 of 6)	-148005	NM_005312	2889	Hs.127897	NM_005312	HPRD:02627	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_28612	chr13	80934194	80934324	+	4.56640	NA	Intergenic	Intergenic	-19173	NM_005842	10253	Hs.18676	NM_005842	HPRD:03916	SPRY2	hSPRY2	sprouty homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_32254	chr14	104354627	104354818	+	4.56640	NA	Intergenic	Intergenic	33181	NM_001127393	9556	Hs.109052	NM_004894	HPRD:05199	C14orf2	MP68|PLPM	chromosome 14 open reading frame 2	protein-coding
19-PTNLD28-TUMOR_peak_52896	chr2	57570734	57570858	+	4.56640	NA	Intergenic	AluJb|SINE|Alu	-563990	NM_001288837	7444	Hs.715298	NM_006296	HPRD:03702	VRK2	-	vaccinia related kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_100888	chr8	129597926	129598042	+	4.56640	NA	Intergenic	Intergenic	-21059	NR_121673	101927774	Hs.628730	NR_121672	ENSG00000254275	LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
19-PTNLD28-TUMOR_peak_63273	chr21	35274159	35274270	+	4.56640	NA	Intergenic	Intergenic	13944	NM_001697	539	Hs.409140	NM_001697	HPRD:02899	ATP5O	ATPO|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
19-PTNLD28-TUMOR_peak_27245	chr12	132293482	132293570	+	4.56640	NA	Intergenic	CpG	-19415	NM_016155	4326	Hs.709245	NM_016155	HPRD:03793	MMP17	MT4-MMP	matrix metallopeptidase 17 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_27213	chr12	131655719	131655821	+	4.56640	NA	intron (NR_026670, intron 1 of 4)	L1M4|LINE|L1	6214	NR_026670	116437	Hs.675497	NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
19-PTNLD28-TUMOR_peak_104972	chr9	102028716	102029045	+	4.56640	NA	Intergenic	L2b|LINE|L2	44310	NM_006808	10952	Hs.191887	NM_006808	HPRD:06715	SEC61B	-	Sec61 beta subunit	protein-coding
19-PTNLD28-TUMOR_peak_12783	chr10	31446621	31446730	+	4.56640	NA	Intergenic	Intergenic	-125809	NM_001143767	220929	Hs.660642	NM_182755	HPRD:11247	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
19-PTNLD28-TUMOR_peak_56821	chr2	168701457	168701579	+	4.56640	NA	intron (NM_020981, intron 1 of 1)	L1PB1|LINE|L1	26336	NM_020981	8708	Hs.735833	NM_020981	HPRD:04369	B3GALT1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_74729	chr4	21771107	21771237	+	4.56640	NA	intron (NM_147182, intron 1 of 8)	intron (NM_147182, intron 1 of 8)	-71854	NM_001035003	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_42377	chr17	53373418	53373506	+	4.56640	NA	intron (NM_002126, intron 2 of 3)	intron (NM_002126, intron 2 of 3)	31141	NM_002126	3131	Hs.196952	NM_002126	HPRD:00797	HLF	-	hepatic leukemia factor	protein-coding
19-PTNLD28-TUMOR_peak_62854	chr21	17996980	17997070	+	4.56640	NA	Intergenic	Intergenic	34468	NR_029694	406912		NR_029694	miRBase:MI0000470	MIR125B2	MIRN125B2	microRNA 125b-2	ncRNA
19-PTNLD28-TUMOR_peak_28637	chr13	87550162	87550250	+	4.56640	NA	Intergenic	L1PA6|LINE|L1	720789	NR_039722	100616182		NR_039722	miRBase:MI0016863	MIR4500	-	microRNA 4500	ncRNA
19-PTNLD28-TUMOR_peak_14174	chr10	72916203	72916291	+	4.56640	NA	Intergenic	Intergenic	-56045	NM_001244889	219699	Hs.522997	NM_170744	HPRD:08487	UNC5B	UNC5H2|p53RDL1	unc-5 homolog B (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_1271	chr1	20598285	20598420	+	4.56640	NA	Intergenic	Intergenic	-19060	NM_001039500	127731	Hs.205178	NM_144623	HPRD:08732	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
19-PTNLD28-TUMOR_peak_12687	chr10	30117405	30117562	+	4.56640	NA	Intergenic	Intergenic	-92753	NM_003174	6840	Hs.499209	NM_003174	HPRD:04992	SVIL	-	supervillin	protein-coding
19-PTNLD28-TUMOR_peak_25575	chr12	92987718	92987985	+	4.56640	NA	Intergenic	L2c|LINE|L2	-108768	NM_001037671	338809	Hs.326303	NM_001037671	ENSG00000214215	C12orf74	-	chromosome 12 open reading frame 74	protein-coding
19-PTNLD28-TUMOR_peak_97681	chr8	23331932	23332074	+	4.56640	NA	Intergenic	Intergenic	-16759	NM_001128930	9583	Hs.444389	NM_004901	HPRD:09618	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
19-PTNLD28-TUMOR_peak_100460	chr8	123479461	123479552	+	4.56640	NA	Intergenic	L1PREC2|LINE|L1	-314395	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_80994	chr5	81928842	81928986	+	4.56640	NA	Intergenic	L1PA5|LINE|L1	-207060	NR_039773	100616297		NR_039773		MIR3977	-	microRNA 3977	ncRNA
19-PTNLD28-TUMOR_peak_32199	chr14	103687070	103687158	+	4.56640	NA	Intergenic	CpG	-31749	NR_033938	100131366	Hs.147881	NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
19-PTNLD28-TUMOR_peak_8236	chr1	172814574	172814738	+	4.56640	NA	Intergenic	Intergenic	186471	NM_000639	356	Hs.2007	NM_000639	HPRD:00610	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6	Fas ligand (TNF superfamily, member 6)	protein-coding
19-PTNLD28-TUMOR_peak_23692	chr12	32810691	32810852	+	4.56640	NA	Intergenic	Intergenic	-21363	NM_001278465	10059	Hs.556296	NM_005690	HPRD:04833	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|HDYNIV	dynamin 1-like	protein-coding
19-PTNLD28-TUMOR_peak_81358	chr5	100760638	100760762	+	4.56640	NA	Intergenic	Intergenic	-521711	NM_175052	7903	Hs.308628	NM_005668	HPRD:03970	ST8SIA4	PST|PST1|SIAT8D|ST8SIA-IV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_33528	chr15	49967394	49967486	+	4.56640	NA	Intergenic	Intergenic	54214	NM_020234	56986	Hs.127432	NM_020234	HPRD:17474	DTWD1	-	DTW domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_10875	chr1	232442193	232442281	+	4.56640	NA	Intergenic	Intergenic	209006	NM_020808	57568	Hs.745009	NM_020808	HPRD:15346	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
19-PTNLD28-TUMOR_peak_31186	chr14	72980724	72980812	+	4.56640	NA	intron (NM_001204420, intron 13 of 15)	intron (NM_001204420, intron 13 of 15)	-2760	NR_106994	102465832		NR_106994		MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
19-PTNLD28-TUMOR_peak_69921	chr3	114276801	114276889	+	4.56640	NA	intron (NR_121662, intron 3 of 6)	intron (NR_121662, intron 3 of 6)	66208	NM_001164347	26137	Hs.202577	NM_015642	HPRD:05822	ZBTB20	DPZF|HOF|ODA-8S|ZNF288	zinc finger and BTB domain containing 20	protein-coding
19-PTNLD28-TUMOR_peak_75734	chr4	76944648	76944758	+	4.56640	NA	promoter-TSS (NM_001565)	promoter-TSS (NM_001565)	-14	NM_001565	3627	Hs.632586	NM_001565	HPRD:00930	CXCL10	C7|IFI10|INP10|IP-10|SCYB10|crg-2|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding
19-PTNLD28-TUMOR_peak_38146	chr16	58743392	58743480	+	4.56640	NA	exon (NM_002080, exon 9 of 10)	exon (NM_002080, exon 9 of 10)	-24762	NM_018231	55238	Hs.10499	NM_018231		SLC38A7	SNAT7	solute carrier family 38, member 7	protein-coding
19-PTNLD28-TUMOR_peak_33717	chr15	58369846	58369934	+	4.56640	NA	Intergenic	Intergenic	-11769	NM_003888	8854	Hs.643455	NM_003888	HPRD:04733	ALDH1A2	RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_15630	chr10	112506187	112506341	+	4.56640	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	102109	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
19-PTNLD28-TUMOR_peak_107400	chrX	3189987	3190075	+	4.56640	NA	intron (NR_038428, intron 1 of 2)	intron (NR_038428, intron 1 of 2)	170	NR_038428	100129464	Hs.187816	NR_038428	ENSG00000228459	CXorf28	-	chromosome X open reading frame 28	ncRNA
19-PTNLD28-TUMOR_peak_31850	chr14	95126761	95126849	+	4.56640	NA	Intergenic	Intergenic	19743	NR_015340	388007	Hs.527795	NR_015340	HPRD:18039	SERPINA13P	SERPINA13|UNQ6121	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_44675	chr18	12777609	12777720	+	4.56640	NA	Intergenic	CpG	-28243	NR_110763	100996324	Hs.333275	NR_110763		LOC100996324	-	uncharacterized LOC100996324	ncRNA
19-PTNLD28-TUMOR_peak_20973	chr11	107053811	107053923	+	4.56640	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-164696	NM_001256424	2977	Hs.24321	NM_000855	HPRD:03146	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1, soluble, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_33238	chr15	41569095	41569270	+	4.56640	NA	intron (NM_007236, intron 5 of 6)	MLT1J|LTR|ERVL-MaLR	-7019	NR_026757	729082	Hs.380164	NR_026757		OIP5-AS1	cyrano	OIP5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21047	chr11	108904513	108904601	+	4.56640	NA	Intergenic	Intergenic	368805	NM_004398	1662	Hs.591931	NM_004398	HPRD:03138	DDX10	HRH-J8	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding
19-PTNLD28-TUMOR_peak_109594	chrX	135849386	135849474	+	4.56640	NA	intron (NM_004840, intron 2 of 21)	CpG	14073	NM_004840	9459	Hs.522795	NM_004840	HPRD:02226	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding
19-PTNLD28-TUMOR_peak_28576	chr13	79702429	79702517	+	4.56640	NA	Intergenic	MIRb|SINE|MIR	277883	NM_001286632	64062	Hs.558528	NM_018605	HPRD:12611	RBM26	ARRS2|C13orf10|PPP1R132|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
19-PTNLD28-TUMOR_peak_25679	chr12	96157853	96157965	+	4.56640	NA	intron (NM_021229, intron 2 of 9)	intron (NM_021229, intron 2 of 9)	26627	NM_021229	59277	Hs.201034	NM_021229	HPRD:10121	NTN4	PRO3091	netrin 4	protein-coding
19-PTNLD28-TUMOR_peak_64956	chr22	29059248	29059364	+	4.56640	NA	intron (NM_001145418, intron 1 of 22)	L1HS|LINE|L1	16547	NM_001145418	23331	Hs.387856	NM_015281	HPRD:10020	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
19-PTNLD28-TUMOR_peak_31940	chr14	97925116	97925207	+	4.56640	NA	promoter-TSS (NR_110166)	promoter-TSS (NR_110166)	8	NR_110166	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA
19-PTNLD28-TUMOR_peak_1965	chr1	30677257	30677345	+	4.56640	NA	Intergenic	HERVH-int|LTR|ERV1	-166842	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_79834	chr5	52218336	52218488	+	4.56640	NA	intron (NM_181501, intron 17 of 28)	intron (NM_181501, intron 17 of 28)	-66744	NM_002203	3673	Hs.482077	NM_002203	HPRD:01893	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	protein-coding
19-PTNLD28-TUMOR_peak_21841	chr11	124272416	124272504	+	4.56640	NA	Intergenic	Intergenic	-5213	NM_001005467	390271	Hs.690456	NM_001005467	HPRD:15079	OR8B3	OR11-311	olfactory receptor, family 8, subfamily B, member 3	protein-coding
19-PTNLD28-TUMOR_peak_93838	chr7	88632328	88632526	+	4.56640	NA	intron (NM_181646, intron 1 of 3)	intron (NM_181646, intron 1 of 3)	-207396	NM_152706	219557	Hs.112877	NM_152706	HPRD:14507	C7orf62	-	chromosome 7 open reading frame 62	protein-coding
19-PTNLD28-TUMOR_peak_91884	chr7	31448102	31448211	+	4.56640	NA	Intergenic	Intergenic	-67618	NM_022728	63974	Hs.45152	NM_022728	HPRD:11387	NEUROD6	Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2	neuronal differentiation 6	protein-coding
19-PTNLD28-TUMOR_peak_23273	chr12	16424138	16424256	+	4.56640	NA	intron (NM_001170798, intron 2 of 8)	intron (NM_001170798, intron 2 of 8)	6422	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15, member 5	protein-coding
19-PTNLD28-TUMOR_peak_3768	chr1	57483033	57483121	+	4.56640	NA	intron (NM_021080, intron 13 of 16)	intron (NM_021080, intron 13 of 16)	-51264	NM_001278544	732	Hs.391835	NM_000066	HPRD:00410	C8B	C82	complement component 8, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_53652	chr2	78713527	78713671	+	4.56640	NA	Intergenic	Intergenic	-195742	NR_110288	101927967	Hs.406952	NR_110288		LOC101927967	-	uncharacterized LOC101927967	ncRNA
19-PTNLD28-TUMOR_peak_97391	chr8	18918331	18918523	+	4.56640	NA	Intergenic	Intergenic	-47231	NM_015310	23362	Hs.434255	NM_015310	HPRD:11462	PSD3	EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_99491	chr8	92267517	92267686	+	4.56640	NA	intron (NM_052832, intron 2 of 18)	intron (NM_052832, intron 2 of 18)	6085	NM_052832	115111	Hs.354013	NM_052832	HPRD:10533	SLC26A7	SUT2	solute carrier family 26 (anion exchanger), member 7	protein-coding
19-PTNLD28-TUMOR_peak_71306	chr3	140643545	140643633	+	4.56640	NA	Intergenic	Intergenic	-17073	NM_018155	55186	Hs.144130	NM_018155	HPRD:07688	SLC25A36	PNC2	solute carrier family 25 (pyrimidine nucleotide carrier ), member 36	protein-coding
19-PTNLD28-TUMOR_peak_95025	chr7	126076689	126076789	+	4.56640	NA	Intergenic	Intergenic	621499	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_105628	chr9	117705493	117705615	+	4.56640	NA	Intergenic	Intergenic	-12679	NM_001252290	944	Hs.494901	NM_001244		TNFSF8	CD153|CD30L|CD30LG	tumor necrosis factor (ligand) superfamily, member 8	protein-coding
19-PTNLD28-TUMOR_peak_45929	chr18	55898260	55898374	+	4.56640	NA	intron (NM_001144971, intron 3 of 30)	AluJr|SINE|Alu	9563	NM_001144966	23327	Hs.185677	NM_015277	HPRD:05903	NEDD4L	NEDD4-2|NEDD4.2|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_80133	chr5	59783769	59783944	+	4.56640	NA	promoter-TSS (NM_001165899)	promoter-TSS (NM_001165899)	69	NM_001165899	5144	Hs.117545	NM_006203	HPRD:02530	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_43871	chr17	78134497	78134592	+	4.56640	NA	Intergenic	LTR36|LTR|ERV1	-9247	NR_047566	79092	Hs.675480	NM_024110	HPRD:06235	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family, member 14	protein-coding
19-PTNLD28-TUMOR_peak_81173	chr5	93091818	93091966	+	4.56640	NA	intron (NM_032042, intron 10 of 10)	L1PB1|LINE|L1	-14583	NM_153216	134187	Hs.678995	NM_153216	HPRD:08695	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_28353	chr13	54311141	54311229	+	4.56640	NA	Intergenic	Intergenic	-78369	NR_047488	100861552	Hs.224691	NR_047488	ENSG00000261517	LINC00558	-	long intergenic non-protein coding RNA 558	ncRNA
19-PTNLD28-TUMOR_peak_33043	chr15	35381920	35382008	+	4.56640	NA	Intergenic	Intergenic	-101467	NM_014106	54989	Hs.744990	NM_014106	HPRD:16918	ZNF770	PRO1914	zinc finger protein 770	protein-coding
19-PTNLD28-TUMOR_peak_78047	chr4	171352581	171352736	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-341120	NM_001286683	51166	Hs.529735	NM_016228	HPRD:12392	AADAT	KAT2|KATII	aminoadipate aminotransferase	protein-coding
19-PTNLD28-TUMOR_peak_71525	chr3	146343039	146343143	+	4.56640	NA	Intergenic	Intergenic	-19088	NM_001085420	389158	Hs.254692	NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_80333	chr5	66285212	66285300	+	4.56640	NA	intron (NM_001290226, intron 1 of 26)	intron (NM_001290226, intron 1 of 26)	14726	NR_111908	101928794	Hs.672435	NR_111908		LOC101928794	-	uncharacterized LOC101928794	ncRNA
19-PTNLD28-TUMOR_peak_106523	chr9	135134699	135134804	+	4.56640	NA	Intergenic	Intergenic	95621	NM_015046	23064	Hs.460317	NM_015046	HPRD:07622	SETX	ALS4|AOA2|SCAR1|bA479K20.2	senataxin	protein-coding
19-PTNLD28-TUMOR_peak_97282	chr8	15744657	15744871	+	4.56640	NA	Intergenic	Intergenic	305536	NM_002445	4481	Hs.147635	NM_002445	HPRD:01092	MSR1	CD204|SCARA1|SR-A|SRA|phSR1|phSR2	macrophage scavenger receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_33443	chr15	45722631	45722854	+	4.56640	NA	promoter-TSS (NM_032413)	promoter-TSS (NM_032413)	15	NM_032413	84419	Hs.112242	NM_032413	HPRD:16332	C15orf48	FOAP-11|NMES1	chromosome 15 open reading frame 48	protein-coding
19-PTNLD28-TUMOR_peak_76038	chr4	84237687	84237822	+	4.56640	NA	intron (NM_001098540, intron 3 of 11)	intron (NM_001098540, intron 3 of 11)	18212	NM_001199830	10855	Hs.44227	NM_006665	HPRD:05286	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
19-PTNLD28-TUMOR_peak_80172	chr5	60712364	60712515	+	4.56640	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	84339	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	-	zinc finger, SWIM-type containing 6	protein-coding
19-PTNLD28-TUMOR_peak_79391	chr5	33333031	33333154	+	4.56640	NA	Intergenic	Intergenic	-107710	NM_001258437	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_27123	chr12	128108325	128108435	+	4.56640	NA	Intergenic	MER41B|LTR|ERV1	12632	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
19-PTNLD28-TUMOR_peak_38186	chr16	64396235	64396383	+	4.56640	NA	Intergenic	Intergenic	759610	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
19-PTNLD28-TUMOR_peak_93617	chr7	79353735	79353823	+	4.56640	NA	Intergenic	MER21A|LTR|ERVL	-46793	NR_031667	100313772		NR_031667	miRBase:MI0006400	MIR548M	MIRN548M	microRNA 548m	ncRNA
19-PTNLD28-TUMOR_peak_108907	chrX	91579251	91579339	+	4.56640	NA	intron (NM_001168361, intron 5 of 6)	intron (NM_001168361, intron 5 of 6)	488835	NM_001168362	27328	Hs.655673	NM_014522	HPRD:02215	PCDH11X	PCDH-X|PCDH11|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
19-PTNLD28-TUMOR_peak_23289	chr12	18302077	18302272	+	4.56640	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-59047	NM_024730	79785	Hs.732831	NM_024730	HPRD:08659	RERGL	-	RERG/RAS-like	protein-coding
19-PTNLD28-TUMOR_peak_40390	chr17	17545103	17545317	+	4.56640	NA	Intergenic	Intergenic	-39577	NM_030665	10743	Hs.655395	NM_030665	HPRD:07406	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
19-PTNLD28-TUMOR_peak_69970	chr3	115928044	115928160	+	4.56640	NA	intron (NM_002338, intron 1 of 6)	L1PA2|LINE|L1	-150769	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	uncharacterized LOC101926903	ncRNA
19-PTNLD28-TUMOR_peak_93686	chr7	81918257	81918345	+	4.56640	NA	intron (NM_000722, intron 3 of 38)	intron (NM_000722, intron 3 of 38)	154730	NM_000722	781	Hs.282151	NM_000722	HPRD:00245	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium channel, voltage-dependent, alpha 2/delta subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_79454	chr5	34854687	34854777	+	4.56640	NA	intron (NM_144725, intron 4 of 10)	intron (NM_144725, intron 4 of 10)	15463	NM_144725	153657	Hs.435742	NM_144725	HPRD:08691	TTC23L	MC25-1	tetratricopeptide repeat domain 23-like	protein-coding
19-PTNLD28-TUMOR_peak_28523	chr13	77047778	77047895	+	4.56640	NA	Intergenic	Intergenic	412704	NM_138444	115207	Hs.644125	NM_138444	HPRD:11060	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_40121	chr17	8689281	8689369	+	4.56640	NA	Intergenic	Intergenic	13342	NM_152599	162387	Hs.213603	NM_152599	HPRD:08186	MFSD6L	-	major facilitator superfamily domain containing 6-like	protein-coding
19-PTNLD28-TUMOR_peak_11664	chr10	2274479	2274567	+	4.56640	NA	Intergenic	Intergenic	82745	NR_038884	399708	Hs.521270	NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	ncRNA
19-PTNLD28-TUMOR_peak_41036	chr17	32527066	32527154	+	4.56640	NA	Intergenic	Intergenic	-16459	NR_110748	101927239	Hs.603592	NR_110748	ENSG00000261156	LOC101927239	-	uncharacterized LOC101927239	ncRNA
19-PTNLD28-TUMOR_peak_79495	chr5	36367834	36367922	+	4.56640	NA	Intergenic	L2|LINE|L2	-65867	NM_145000	202151	Hs.729817	NM_145000	HPRD:08064	RANBP3L	-	RAN binding protein 3-like	protein-coding
19-PTNLD28-TUMOR_peak_34502	chr15	74927641	74927729	+	4.56640	NA	intron (NM_001142444, intron 7 of 7)	intron (NM_001142444, intron 7 of 7)	20350	NM_001130028	1198	Hs.584748	NM_001292	HPRD:04290	CLK3	PHCLK3|PHCLK3/152	CDC-like kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_35162	chr15	90304110	90304199	+	4.56640	NA	Intergenic	Intergenic	-9614	NM_018670	55897	Hs.447531	NM_018670		MESP1	bHLHc5	mesoderm posterior basic helix-loop-helix transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_30696	chr14	62351743	62351856	+	4.56640	NA	Intergenic	Intergenic	-110742	NM_031914	83851	Hs.404139	NM_031914	HPRD:15461	SYT16	CHR14SYT|SYT14L|Strep14|syt14r|yt14r	synaptotagmin XVI	protein-coding
19-PTNLD28-TUMOR_peak_19651	chr11	69089350	69089575	+	4.56640	NA	Intergenic	Intergenic	27857	NM_001300924	26579	Hs.523848	NM_138768	HPRD:16130	MYEOV	OCIM	myeloma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_71855	chr3	155229627	155229715	+	4.56640	NA	intron (NM_014996, intron 11 of 21)	L1PA2|LINE|L1	164434	NM_001130961	23007	Hs.567423	NM_014996	HPRD:11438	PLCH1	PLCL3	phospholipase C, eta 1	protein-coding
19-PTNLD28-TUMOR_peak_57736	chr2	201229543	201229631	+	4.56640	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	55914	NM_001282744	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_83878	chr5	170275138	170275226	+	4.56640	NA	Intergenic	AluSz6|SINE|Alu	-13714	NM_022897	64901	Hs.410810	NM_022897	HPRD:05847	RANBP17	-	RAN binding protein 17	protein-coding
19-PTNLD28-TUMOR_peak_106527	chr9	135224226	135224322	+	4.56640	NA	intron (NM_015046, intron 3 of 25)	AluJb|SINE|Alu	6098	NM_015046	23064	Hs.460317	NM_015046	HPRD:07622	SETX	ALS4|AOA2|SCAR1|bA479K20.2	senataxin	protein-coding
19-PTNLD28-TUMOR_peak_16073	chr10	124892618	124892717	+	4.56640	NA	Intergenic	CpG	-2900	NM_001105574	340784	Hs.531194	NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_27498	chr13	24902231	24902434	+	4.56640	NA	Intergenic	CpG	18616	NM_178540	338872	Hs.362854	NM_178540	HPRD:14659	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and tumor necrosis factor related protein 9	protein-coding
19-PTNLD28-TUMOR_peak_77176	chr4	140149043	140149131	+	4.56640	NA	Intergenic	Intergenic	52405	NM_032623	84709	Hs.710036	NM_032623	HPRD:17805	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria-localized glutamic acid-rich protein	protein-coding
19-PTNLD28-TUMOR_peak_33491	chr15	48345288	48345449	+	4.56640	NA	Intergenic	MLT2B1|LTR|ERVL	-67801	NM_205850	283652	Hs.710240	NM_205850	HPRD:18055	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_108442	chrX	55713000	55713088	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-31066	NM_016656	10325	Hs.50282	NM_006064	HPRD:06710	RRAGB	RAGB|bA465E19.1	Ras-related GTP binding B	protein-coding
19-PTNLD28-TUMOR_peak_17043	chr11	9528339	9528505	+	4.56640	NA	intron (NM_001282657, intron 10 of 14)	intron (NM_001282657, intron 10 of 14)	45910	NM_001282656	7702	Hs.523471	NM_003442	HPRD:04578	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
19-PTNLD28-TUMOR_peak_8532	chr1	179763952	179764098	+	4.56640	NA	intron (NM_173509, intron 1 of 4)	MIRb|SINE|MIR	51727	NM_173509	148753	Hs.729631	NM_173509	HPRD:14454	FAM163A	C1orf76|NDSP	family with sequence similarity 163, member A	protein-coding
19-PTNLD28-TUMOR_peak_39003	chr16	81907618	81907718	+	4.56640	NA	intron (NM_002661, intron 7 of 32)	intron (NM_002661, intron 7 of 32)	94805	NM_002661	5336	Hs.372303	NM_002661	HPRD:02570	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	protein-coding
19-PTNLD28-TUMOR_peak_15675	chr10	114067672	114067856	+	4.56640	NA	TTS (NR_028134)	TTS (NR_028134)	-8318	NR_106772	102465427		NR_106772		MIR6715B	hsa-mir-6715b	microRNA 6715b	ncRNA
19-PTNLD28-TUMOR_peak_83637	chr5	160062163	160062313	+	4.56640	NA	intron (NM_025153, intron 11 of 25)	L2a|LINE|L2	149879	NR_029701	406938		NR_029701	miRBase:MI0000477	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
19-PTNLD28-TUMOR_peak_37811	chr16	52016729	52016870	+	4.56640	NA	Intergenic	Intergenic	91048	NM_001242473	388276	Hs.534669	NM_001242473	ENSG00000261190	C16orf97	-	chromosome 16 open reading frame 97	protein-coding
19-PTNLD28-TUMOR_peak_33718	chr15	58403485	58403634	+	4.56640	NA	Intergenic	Intergenic	-26849	NM_020980	366	Hs.104624	NM_020980	HPRD:04223	AQP9	AQP-9|HsT17287|SSC1	aquaporin 9	protein-coding
19-PTNLD28-TUMOR_peak_41083	chr17	33701348	33701699	+	4.56640	NA	promoter-TSS (NM_001104589)	promoter-TSS (NM_001104589)	-803	NM_152270	91607	Hs.745059	NM_152270	HPRD:08178	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
19-PTNLD28-TUMOR_peak_100469	chr8	123685835	123685924	+	4.56640	NA	Intergenic	Intergenic	-108022	NM_014943	22882	Hs.377090	NM_014943	HPRD:16458	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
19-PTNLD28-TUMOR_peak_90433	chr6	162889495	162889635	+	4.56640	NA	intron (NM_004562, intron 1 of 11)	L3|LINE|CR1	-258599	NM_001080378	135138	Hs.25791	NM_152410	HPRD:07465	PACRG	GLUP|HAK005771|PARK2CRG	PARK2 co-regulated	protein-coding
19-PTNLD28-TUMOR_peak_18791	chr11	60299693	60299852	+	4.56640	NA	intron (NM_001012417, intron 6 of 6)	L1PA2|LINE|L1	16886	NM_001278320	503497	Hs.523704	NM_001012417	HPRD:17604	MS4A13	-	membrane-spanning 4-domains, subfamily A, member 13	protein-coding
19-PTNLD28-TUMOR_peak_75293	chr4	53089946	53090034	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	172493	NM_001297608	132671	Hs.527090	NM_145263	HPRD:14050	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
19-PTNLD28-TUMOR_peak_76146	chr4	87620605	87620773	+	4.56640	NA	intron (NM_080685, intron 6 of 47)	L2|LINE|L2	105221	NM_080685	5783	Hs.436142	NM_006264	HPRD:02602	PTPN13	FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E	protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)	protein-coding
19-PTNLD28-TUMOR_peak_26505	chr12	117363018	117363115	+	4.56640	NA	intron (NM_153348, intron 1 of 10)	LTR16A|LTR|ERVL	14305	NM_012174	26259	Hs.624537	NM_012174	HPRD:16427	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_61579	chr20	46808876	46808999	+	4.56640	NA	Intergenic	Intergenic	-179717	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_33861	chr15	62402874	62403008	+	4.56640	NA	Intergenic	Intergenic	43765	NM_207322	145741	Hs.202656	NM_207322	HPRD:14830	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_96868	chr8	1729528	1729616	+	4.56640	NA	3' UTR (NM_018941, exon 3 of 3)	3' UTR (NM_018941, exon 3 of 3)	17702	NM_018941	2055	Hs.127675	NM_018941	HPRD:06383	CLN8	C8orf61|EPMR	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	protein-coding
19-PTNLD28-TUMOR_peak_56265	chr2	150535923	150536016	+	4.56640	NA	intron (NR_110240, intron 1 of 2)	MLT1J2|LTR|ERVL-MaLR	-91639	NM_015702	27249	Hs.5324	NM_015702	HPRD:10781	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
19-PTNLD28-TUMOR_peak_106565	chr9	136055442	136055553	+	4.56640	NA	Intergenic	Intergenic	-16165	NM_001288573	26301	Hs.495419	NM_021996	HPRD:16193	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_60952	chr20	36942882	36942984	+	4.56640	NA	intron (NM_001725, intron 5 of 14)	(ATGGTG)n|Simple_repeat|Simple_repeat	10381	NM_001725	671	Hs.529019	NM_001725	HPRD:00174	BPI	BPIFD1|rBPI	bactericidal/permeability-increasing protein	protein-coding
19-PTNLD28-TUMOR_peak_53406	chr2	71488736	71488929	+	4.56640	NA	Intergenic	MIR3|SINE|MIR	-34599	NM_020459	400961	Hs.416735	NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
19-PTNLD28-TUMOR_peak_45702	chr18	47556973	47557169	+	4.56640	NA	intron (NM_001080467, intron 4 of 39)	intron (NM_001080467, intron 4 of 39)	95862	NR_036204	100422865		NR_036204		MIR4320	-	microRNA 4320	ncRNA
19-PTNLD28-TUMOR_peak_107554	chrX	11904992	11905113	+	4.56640	NA	Intergenic	L2a|LINE|L2	127317	NM_006800	10943	Hs.655288	NM_006800	HPRD:05344	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_79665	chr5	41493597	41493685	+	4.56640	NA	intron (NM_001005473, intron 1 of 2)	L1PA3|LINE|L1	17089	NM_001005473	345557	Hs.145404	NM_001005473	HPRD:17860	PLCXD3	-	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_91800	chr7	29410187	29410275	+	4.56640	NA	intron (NM_001293069, intron 4 of 13)	intron (NM_001293069, intron 4 of 13)	-109097	NM_001293076	1124	Hs.654611	NM_004067	HPRD:04173	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_71040	chr3	135304018	135304166	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-380423	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
19-PTNLD28-TUMOR_peak_19650	chr11	69087967	69088055	+	4.56640	NA	Intergenic	Intergenic	26406	NM_001300924	26579	Hs.523848	NM_138768	HPRD:16130	MYEOV	OCIM	myeloma overexpressed	protein-coding
19-PTNLD28-TUMOR_peak_25982	chr12	105868577	105868756	+	4.56640	NA	Intergenic	L2a|LINE|L2	144252	NM_001145199	387882	Hs.368938	NM_207376	HPRD:17368	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
19-PTNLD28-TUMOR_peak_28978	chr13	107386687	107386775	+	4.56640	NA	Intergenic	Intergenic	80503	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_76342	chr4	98554678	98554766	+	4.56640	NA	intron (NM_174952, intron 10 of 10)	L1PA3|LINE|L1	266645	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_52771	chr2	53357156	53357351	+	4.56640	NA	Intergenic	Intergenic	-637676	NM_001008708	494143	Hs.585944	NM_001008708	HPRD:17418	CHAC2	-	ChaC, cation transport regulator homolog 2 (E. coli)	protein-coding
19-PTNLD28-TUMOR_peak_88981	chr6	107385816	107385911	+	4.56640	NA	TTS (NM_001080450)	TTS (NM_001080450)	36487	NM_001142468	51250	Hs.486084	NM_016487	HPRD:12873	C6orf203	PRED31	chromosome 6 open reading frame 203	protein-coding
19-PTNLD28-TUMOR_peak_11745	chr10	3941127	3941291	+	4.56640	NA	Intergenic	Intergenic	-92143	NR_106726	102464829		NR_106726		MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
19-PTNLD28-TUMOR_peak_95034	chr7	126577453	126577541	+	4.56640	NA	intron (NR_028041, intron 2 of 10)	MLT1J-int|LTR|ERVL-MaLR	120741	NR_030323	693177		NR_030323		MIR592	MIRN592|hsa-mir-592	microRNA 592	ncRNA
19-PTNLD28-TUMOR_peak_20508	chr11	88796124	88796212	+	4.56640	NA	intron (NM_000842, intron 1 of 8)	intron (NM_000842, intron 1 of 8)	678	NM_000842	2915	Hs.147361	NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate receptor, metabotropic 5	protein-coding
19-PTNLD28-TUMOR_peak_90444	chr6	164066792	164066885	+	4.56640	NA	Intergenic	Intergenic	231163	NM_001301085	9444	Hs.510324	NM_006775	HPRD:06691	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing, RNA binding	protein-coding
19-PTNLD28-TUMOR_peak_94609	chr7	103570426	103570555	+	4.56640	NA	intron (NM_005045, intron 1 of 64)	intron (NM_005045, intron 1 of 64)	59473	NM_005045	5649	Hs.655654	NM_005045	HPRD:02742	RELN	LIS2|PRO1598|RL	reelin	protein-coding
19-PTNLD28-TUMOR_peak_109371	chrX	123423509	123423597	+	4.56640	NA	Intergenic	Intergenic	-56579	NM_002351	4068	Hs.349094	NM_002351	HPRD:02390	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
19-PTNLD28-TUMOR_peak_81321	chr5	99192114	99192299	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	322512	NR_110562	102724855	Hs.519477	NR_110562		CTD-2151A2.1	-	uncharacterized LOC102724855	ncRNA
19-PTNLD28-TUMOR_peak_2938	chr1	43243679	43243767	+	4.56640	NA	Intergenic	Intergenic	-9938	NM_001242750	100129924	Hs.720780	NM_001242750		LOC100129924	-	uncharacterized LOC100129924	protein-coding
19-PTNLD28-TUMOR_peak_93834	chr7	88352487	88352612	+	4.56640	NA	Intergenic	Intergenic	-36204	NM_181646	219578	Hs.684410	NM_181646	HPRD:08721	ZNF804B	-	zinc finger protein 804B	protein-coding
19-PTNLD28-TUMOR_peak_48236	chr19	21856350	21856494	+	4.56640	NA	Intergenic	LTR43|LTR|ERV1	-77125	NR_024523	641367	Hs.680128	NR_024523	ENSG00000269845	LOC641367	-	cyclin Y-like 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_89252	chr6	117827765	117827853	+	4.56640	NA	intron (NM_173674, intron 2 of 14)	intron (NM_173674, intron 2 of 14)	23989	NM_173674	285761	Hs.658304	NM_173674	HPRD:16784	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_96530	chr7	153247348	153247512	+	4.56640	NA	Intergenic	Intergenic	-138111	NR_125776	103724390	Hs.614280	NR_125776		LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA
19-PTNLD28-TUMOR_peak_77144	chr4	139560543	139560632	+	4.56640	NA	Intergenic	Intergenic	329722	NR_051987	100874047	Hs.570848	NR_051987	ENSG00000251372	LINC00499	-	long intergenic non-protein coding RNA 499	ncRNA
19-PTNLD28-TUMOR_peak_33653	chr15	55920072	55920231	+	4.56640	NA	intron (NM_173814, intron 16 of 19)	MER5A1|DNA|hAT-Charlie	-39101	NM_015617	26108	Hs.87194	NM_015617		PYGO1	-	pygopus family PHD finger 1	protein-coding
19-PTNLD28-TUMOR_peak_85577	chr6	15133108	15133270	+	4.56640	NA	Intergenic	Intergenic	-113017	NM_004973	3720	Hs.269059	NM_004973	HPRD:03355	JARID2	JMJ	jumonji, AT rich interactive domain 2	protein-coding
19-PTNLD28-TUMOR_peak_102398	chr9	19788733	19788973	+	4.56640	NA	Intergenic	CpG	-1836	NM_020344	25769	Hs.283014	NM_020344	HPRD:15351	SLC24A2	NCKX2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_23845	chr12	43005107	43005195	+	4.56640	NA	Intergenic	Intergenic	-21579	NM_153026	144165	Hs.524348	NM_153026	HPRD:16341	PRICKLE1	EPM1B|RILP	prickle homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_91255	chr7	8153996	8154084	+	4.56640	NA	intron (NM_001276478, intron 13 of 13)	intron (NM_001276478, intron 13 of 13)	-145657	NR_110018	100505921	Hs.634989	NR_110018		LOC100505921	-	uncharacterized LOC100505921	ncRNA
19-PTNLD28-TUMOR_peak_26280	chr12	110969779	110969902	+	4.56640	NA	TTS (NM_001286532)	TTS (NM_001286532)	29692	NM_001286534	144715	Hs.97794	NM_152442	ENSG00000151164	RAD9B	-	RAD9 homolog B (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_89357	chr6	125553718	125553825	+	4.56640	NA	intron (NM_001300994, intron 3 of 5)	intron (NM_001300994, intron 3 of 5)	69511	NM_016063	51020	Hs.32826	NM_016063	HPRD:12897	HDDC2	C6orf74|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_93671	chr7	81039929	81040017	+	4.56640	NA	Intergenic	Intergenic	359479	NM_001010933	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_35080	chr15	88053601	88053689	+	4.56640	NA	Intergenic	L1HS|LINE|L1	-66515	NR_026869	145978	Hs.350808	NM_152454	HPRD:08101	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
19-PTNLD28-TUMOR_peak_104288	chr9	88817285	88817373	+	4.56640	NA	Intergenic	Intergenic	53619	NM_001276368	389766	Hs.632073	NM_001010907	HPRD:16677	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
19-PTNLD28-TUMOR_peak_107919	chrX	37003552	37003758	+	4.56640	NA	Intergenic	CpG	-22777	NM_001013736	442444	Hs.535216	NM_001013736	HPRD:18474	FAM47C	-	family with sequence similarity 47, member C	protein-coding
19-PTNLD28-TUMOR_peak_28464	chr13	74215092	74215234	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	76782	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
19-PTNLD28-TUMOR_peak_34950	chr15	84811734	84811975	+	4.56640	NA	Intergenic	Intergenic	-29388	NM_001243531	100505679	Hs.726826	NM_001243531	ENSG00000259511	UBE2Q2L	-	ubiquitin-conjugating enzyme E2Q family member 2-like	protein-coding
19-PTNLD28-TUMOR_peak_4553	chr1	84543686	84543774	+	4.56640	NA	promoter-TSS (NM_002731)	promoter-TSS (NM_002731)	72	NM_207578	5567	Hs.487325	NM_002731	HPRD:01482	PRKACB	PKA C-beta|PKACB	protein kinase, cAMP-dependent, catalytic, beta	protein-coding
19-PTNLD28-TUMOR_peak_36094	chr16	7137001	7137104	+	4.56640	NA	intron (NM_018723, intron 4 of 15)	intron (NM_018723, intron 4 of 15)	-245699	NM_145891	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_33211	chr15	41117895	41118070	+	4.56640	NA	intron (NM_001130143, intron 1 of 4)	intron (NM_001130143, intron 1 of 4)	2925	NM_017726	54866	Hs.192927	NM_017726	HPRD:17891	PPP1R14D	CPI17-like|GBPI-1|GBPI1	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding
19-PTNLD28-TUMOR_peak_23561	chr12	28913568	28913783	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-388261	NM_001271783	55711	Hs.728955	NM_018099	HPRD:14723	FAR2	MLSTD1|SDR10E2	fatty acyl CoA reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_81227	chr5	95429912	95430064	+	4.56640	NA	Intergenic	Intergenic	15146	NR_030309	693168		NR_030309	miRBase:MI0003590	MIR583	MIRN583|hsa-mir-583	microRNA 583	ncRNA
19-PTNLD28-TUMOR_peak_92858	chr7	64428878	64428983	+	4.56640	NA	Intergenic	SVA_D|Other|Other	22484	NM_015852	51351	Hs.250693	NM_015852		ZNF117	H-plk|HPF9	zinc finger protein 117	protein-coding
19-PTNLD28-TUMOR_peak_90171	chr6	155662764	155662852	+	4.56640	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-27191	NM_016020	51106	Hs.279908	NM_016020		TFB1M	CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_28127	chr13	46439664	46439821	+	4.56640	NA	Intergenic	Intergenic	-13896	NM_198849	283514	Hs.368483	NM_198849	HPRD:14145	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_97114	chr8	10405719	10405857	+	4.56640	NA	intron (NM_001197020, intron 4 of 4)	intron (NM_001197020, intron 4 of 4)	22732	NM_198464	203074	Hs.591394	NM_198464	HPRD:07162	PRSS55	CT153|T-SP1|TSP1|UNQ9391	protease, serine, 55	protein-coding
19-PTNLD28-TUMOR_peak_52146	chr2	37641685	37641773	+	4.56640	NA	Intergenic	Intergenic	69976	NM_012413	25797	Hs.79033	NM_012413	HPRD:06140	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_99944	chr8	105140113	105140237	+	4.56640	NA	intron (NM_001100117, intron 19 of 23)	intron (NM_001100117, intron 19 of 23)	-95388	NM_001282882	9699	Hs.655271	NM_014677		RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
19-PTNLD28-TUMOR_peak_77952	chr4	167491340	167491634	+	4.56640	NA	Intergenic	L1HS|LINE|L1	664090	NM_001204353	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_33500	chr15	48578029	48578213	+	4.56640	NA	intron (NM_001184832, intron 21 of 26)	intron (NM_001184832, intron 21 of 26)	-45500	NM_001025249	1854	Hs.527980	NM_001948	HPRD:03165	DUT	dUTPase	deoxyuridine triphosphatase	protein-coding
19-PTNLD28-TUMOR_peak_26443	chr12	114211463	114211551	+	4.56640	NA	promoter-TSS (NR_110026)	promoter-TSS (NR_110026)	-19	NR_110025	100506465	Hs.211461	NR_110025	ENSG00000249550	LINC01234	-	long intergenic non-protein coding RNA 1234	ncRNA
19-PTNLD28-TUMOR_peak_25754	chr12	98791403	98791544	+	4.56640	NA	Intergenic	Intergenic	59450	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_98141	chr8	35381354	35381444	+	4.56640	NA	intron (NM_080872, intron 1 of 16)	intron (NM_080872, intron 1 of 16)	288424	NM_080872	137970	Hs.238889	NM_080872	HPRD:11661	UNC5D	PRO34692|Unc5h4	unc-5 homolog D (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_45066	chr18	28177594	28177748	+	4.56640	NA	Intergenic	Intergenic	298795	NR_031684	100302131		NR_031684		MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	ncRNA
19-PTNLD28-TUMOR_peak_91673	chr7	25058419	25058534	+	4.56640	NA	Intergenic	SVA_F|Other|Other	-38645	NM_015550	26031	Hs.520259	NM_015550	HPRD:09474	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
19-PTNLD28-TUMOR_peak_80887	chr5	78525312	78525493	+	4.56640	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-6523	NM_152405	133746	Hs.482605	NM_152405	HPRD:05045	JMY	WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
19-PTNLD28-TUMOR_peak_88476	chr6	80447071	80447214	+	4.56640	NA	Intergenic	Intergenic	-4494	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro-associated Y4	ncRNA
19-PTNLD28-TUMOR_peak_18158	chr11	40012018	40012138	+	4.56640	NA	Intergenic	LTR30|LTR|ERV1	302602	NR_047674	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_80983	chr5	81521406	81521578	+	4.56640	NA	intron (NM_031482, intron 5 of 7)	intron (NM_031482, intron 5 of 7)	52743	NM_001025	6228	Hs.527193	NM_001025	HPRD:04729	RPS23	S23	ribosomal protein S23	protein-coding
19-PTNLD28-TUMOR_peak_8029	chr1	168097009	168097101	+	4.56640	NA	intron (NM_001267610, intron 1 of 6)	THE1B|LTR|ERVL-MaLR	8619	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_32904	chr15	32400037	32400135	+	4.56640	NA	intron (NR_046324, intron 3 of 7)	MER21C|LTR|ERVL	77400	NR_046324	1139	Hs.511772	NM_000746		CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor, nicotinic, alpha 7 (neuronal)	protein-coding
19-PTNLD28-TUMOR_peak_79193	chr5	19080641	19080790	+	4.56640	NA	Intergenic	L1P1|LINE|L1	805666	NM_001291957	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_40755	chr17	26167263	26167630	+	4.56640	NA	Intergenic	LTR39-int|LTR|ERV1	-39891	NM_000625	4843	Hs.709191	NM_000625	HPRD:01225	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2, inducible	protein-coding
19-PTNLD28-TUMOR_peak_76509	chr4	107450966	107451125	+	4.56640	NA	Intergenic	L1MA10|LINE|L1	-162453	NM_001195138	100507096	Hs.722750	NM_001195138		GIMD1	-	GIMAP family P-loop NTPase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94693	chr7	105670096	105670265	+	4.56640	NA	intron (NM_001301161, intron 16 of 17)	intron (NM_001301161, intron 16 of 17)	66523	NM_001301161	222256	Hs.150120	NM_152750	HPRD:08042	CDHR3	CDH28	cadherin-related family member 3	protein-coding
19-PTNLD28-TUMOR_peak_12173	chr10	15493603	15493772	+	4.56640	NA	Intergenic	Intergenic	-80629	NM_001010924	221061	Hs.66762	NM_001010924	HPRD:18581	FAM171A1	C10orf38	family with sequence similarity 171, member A1	protein-coding
19-PTNLD28-TUMOR_peak_23280	chr12	17151674	17151862	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	10087	NR_036619	728622	Hs.741380	NR_036619		SKP1P2	SKP1B|p19B	S-phase kinase-associated protein 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_54605	chr2	102868030	102868190	+	4.56640	NA	Intergenic	Intergenic	-59852	NM_001282408	9173	Hs.66	NM_003856	HPRD:03123	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor-like 1	protein-coding
19-PTNLD28-TUMOR_peak_59645	chr20	4923141	4923257	+	4.56640	NA	intron (NM_005116, intron 2 of 16)	intron (NM_005116, intron 2 of 16)	58946	NM_005116	9962	Hs.516866	NM_005116	HPRD:04811	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 (ascorbic acid transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_71076	chr3	136110556	136110718	+	4.56640	NA	intron (NM_005862, intron 22 of 33)	intron (NM_005862, intron 22 of 33)	141470	NM_001178014	5096	Hs.63788	NM_000532	HPRD:01982	PCCB	-	propionyl CoA carboxylase, beta polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_72453	chr3	176187772	176187962	+	4.56640	NA	Intergenic	LTR22C|LTR|ERVK	165453	NR_109968	100505547	Hs.253350	NR_109968	ENSG00000223715	LINC01208	-	long intergenic non-protein coding RNA 1208	ncRNA
19-PTNLD28-TUMOR_peak_60712	chr20	33975226	33975314	+	4.56640	NA	intron (NM_199487, intron 2 of 8)	intron (NM_199487, intron 2 of 8)	24675	NM_018244	55245	Hs.726290	NM_018244	HPRD:12770	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
19-PTNLD28-TUMOR_peak_25094	chr12	67355025	67355113	+	4.56640	NA	Intergenic	Intergenic	134995	NR_120490	102724421	Hs.135774	NR_120490		LOC102724421	-	uncharacterized LOC102724421	ncRNA
19-PTNLD28-TUMOR_peak_76834	chr4	122078252	122078376	+	4.56640	NA	exon (NM_024873, exon 4 of 11)	exon (NM_024873, exon 4 of 11)	7181	NM_024873	79931	Hs.208206	NM_024873	HPRD:16268	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
19-PTNLD28-TUMOR_peak_92025	chr7	36298146	36298262	+	4.56640	NA	intron (NM_030636, intron 3 of 7)	L1PA7|LINE|L1	105368	NM_030636	80820	Hs.487994	NM_030636	HPRD:13884	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_108347	chrX	51603938	51604033	+	4.56640	NA	intron (NM_001005332, intron 1 of 12)	intron (NM_001005332, intron 1 of 12)	-32713	NM_001005333	9500	Hs.5258	NM_006986	HPRD:02202	MAGED1	DLXIN-1|NRAGE	melanoma antigen family D, 1	protein-coding
19-PTNLD28-TUMOR_peak_30105	chr14	46523895	46523983	+	4.56640	NA	Intergenic	Intergenic	-9423	NR_102701	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
19-PTNLD28-TUMOR_peak_81366	chr5	101789630	101789718	+	4.56640	NA	intron (NM_001289004, intron 5 of 12)	L1M4|LINE|L1	45046	NM_001289002	133482	Hs.388874	NM_173488	HPRD:15400	SLCO6A1	CT48|GST|OATP-I|OATP6A1|OATPY	solute carrier organic anion transporter family, member 6A1	protein-coding
19-PTNLD28-TUMOR_peak_91643	chr7	24007834	24007922	+	4.56640	NA	Intergenic	Intergenic	257933	NM_001260504	56164	Hs.309767	NM_031414	HPRD:10427	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
19-PTNLD28-TUMOR_peak_50848	chr2	3528987	3529196	+	4.56640	NA	Intergenic	Intergenic	-5741	NM_018269	55256	Hs.502773	NM_018269	HPRD:17607	ADI1	APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_27797	chr13	34339008	34339105	+	4.56640	NA	Intergenic	Intergenic	-53150	NM_002915	5983	Hs.115474	NM_002915	HPRD:02676	RFC3	RFC38	replication factor C (activator 1) 3, 38kDa	protein-coding
19-PTNLD28-TUMOR_peak_98887	chr8	57360580	57360697	+	4.56640	NA	Intergenic	CpG	-1356	NM_001135690	5179	Hs.339831	NM_006211	HPRD:08837	PENK	-	proenkephalin	protein-coding
19-PTNLD28-TUMOR_peak_43248	chr17	71147434	71147523	+	4.56640	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-13682	NM_001050	6752	Hs.514451	NM_001050		SSTR2	-	somatostatin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_33492	chr15	48354875	48354963	+	4.56640	NA	Intergenic	Intergenic	-58250	NM_205850	283652	Hs.710240	NM_205850	HPRD:18055	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	protein-coding
19-PTNLD28-TUMOR_peak_20275	chr11	78672287	78672413	+	4.56640	NA	intron (NM_001098816, intron 6 of 33)	intron (NM_001098816, intron 6 of 33)	-386441	NM_024678	79731	Hs.503389	NM_024678	HPRD:08026	NARS2	SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_75664	chr4	74606216	74606440	+	4.56640	NA	5' UTR (NM_000584, exon 1 of 4)	5' UTR (NM_000584, exon 1 of 4)	105	NM_000584	3576	Hs.624	NM_000584	HPRD:00909	CXCL8	GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1	chemokine (C-X-C motif) ligand 8	protein-coding
19-PTNLD28-TUMOR_peak_63004	chr21	28574718	28574892	+	4.56640	NA	Intergenic	Intergenic	-235366	NM_007038	11096	Hs.58324	NM_007038	HPRD:05420	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	ADAM metallopeptidase with thrombospondin type 1 motif, 5	protein-coding
19-PTNLD28-TUMOR_peak_17105	chr11	10621475	10621574	+	4.56640	NA	TTS (NR_046375)	TTS (NR_046375)	-31159	NM_006691	10894	Hs.655332	NM_006691		LYVE1	CRSBP-1|HAR|LYVE-1|XLKD1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_69816	chr3	112407792	112407946	+	4.56640	NA	Intergenic	Intergenic	-47879	NM_199511	151887	Hs.477128	NM_199511	HPRD:10508	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
19-PTNLD28-TUMOR_peak_27513	chr13	25191926	25192209	+	4.56640	NA	Intergenic	Intergenic	37721	NR_002815	374491	Hs.406779	NR_002815		TPTE2P6	-	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_10257	chr1	223169060	223169237	+	4.56640	NA	intron (NM_032890, intron 9 of 9)	intron (NM_032890, intron 9 of 9)	147476	NM_003268	7100	Hs.604542	NM_003268	HPRD:04326	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll-like receptor 5	protein-coding
19-PTNLD28-TUMOR_peak_99390	chr8	86425848	86426009	+	4.56640	NA	Intergenic	Intergenic	-48784	NR_121630	100996348	Hs.606624	NR_121630		LOC100996348	-	uncharacterized LOC100996348	ncRNA
19-PTNLD28-TUMOR_peak_43748	chr17	76362716	76362910	+	4.56640	NA	intron (NR_110847, intron 2 of 4)	intron (NR_110847, intron 2 of 4)	5730	NR_110846	101928674	Hs.637297	NR_110845		LOC101928674	-	uncharacterized LOC101928674	ncRNA
19-PTNLD28-TUMOR_peak_3619	chr1	54535916	54536012	+	4.56640	NA	intron (NM_153035, intron 3 of 4)	intron (NM_153035, intron 3 of 4)	16212	NR_039942	100616315		NR_039942	miRBase:MI0017426	MIR4781	-	microRNA 4781	ncRNA
19-PTNLD28-TUMOR_peak_108450	chrX	56258669	56258867	+	4.56640	NA	promoter-TSS (NM_001159296)	promoter-TSS (NM_001159296)	-54	NM_007250	11279	Hs.646614	NM_007250	HPRD:02238	KLF8	BKLF3|ZNF741	Kruppel-like factor 8	protein-coding
19-PTNLD28-TUMOR_peak_101180	chr8	134996696	134996887	+	4.56640	NA	Intergenic	Intergenic	98052	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
19-PTNLD28-TUMOR_peak_58818	chr2	232406926	232407048	+	4.56640	NA	Intergenic	L1MB3|LINE|L1	-11805	NM_006056	10316	Hs.471619	NM_006056	HPRD:16039	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_76558	chr4	109802429	109802622	+	4.56640	NA	intron (NM_198721, intron 18 of 36)	intron (NM_198721, intron 18 of 36)	-118290	NM_001146590	64850	Hs.106576	NM_031279	HPRD:10639	ETNPPL	AGXT2L1	ethanolamine-phosphate phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_31666	chr14	91095833	91095938	+	4.56640	NA	intron (NM_001010854, intron 15 of 19)	intron (NM_001010854, intron 15 of 19)	-13088	NR_110134	101928909	Hs.662545	NR_110134	ENSG00000259163	LOC101928909	-	uncharacterized LOC101928909	ncRNA
19-PTNLD28-TUMOR_peak_85311	chr6	11034168	11034353	+	4.56640	NA	intron (NM_017770, intron 1 of 7)	intron (NM_017770, intron 1 of 7)	-9731	NR_038964	100506409	Hs.43818	NR_038962		ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36669	chr16	20054428	20054547	+	4.56640	NA	intron (NM_001002911, intron 1 of 1)	intron (NM_001002911, intron 1 of 1)	30613	NM_001002911	124274	Hs.446875	NM_001002911		GPR139	GPRg1|PGR3	G protein-coupled receptor 139	protein-coding
19-PTNLD28-TUMOR_peak_17289	chr11	13062717	13062851	+	4.56640	NA	Intergenic	Intergenic	31814	NM_001080521	644943	Hs.134650	NM_001080521		RASSF10	-	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
19-PTNLD28-TUMOR_peak_17643	chr11	21774576	21774831	+	4.56640	NA	Intergenic	LTR12C|LTR|ERV1	-440019	NM_213599	203859	Hs.154329	NM_213599	HPRD:10558	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
19-PTNLD28-TUMOR_peak_30151	chr14	49772939	49773027	+	4.56640	NA	Intergenic	Intergenic	280151	NM_001032	6235	Hs.156367	NM_001032	HPRD:04698	RPS29	DBA13|S29	ribosomal protein S29	protein-coding
19-PTNLD28-TUMOR_peak_16214	chr10	128437800	128437888	+	4.56640	NA	Intergenic	Intergenic	-156134	NM_001290223	1793	Hs.159195	NM_001380	HPRD:03240	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
19-PTNLD28-TUMOR_peak_69838	chr3	112541318	112541477	+	4.56640	NA	intron (NM_001008784, intron 4 of 5)	MER21B|LTR|ERVL	23400	NM_001199215	344807	Hs.531814	NM_001008784	HPRD:16691	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1-like	protein-coding
19-PTNLD28-TUMOR_peak_36907	chr16	24516222	24516310	+	4.56640	NA	Intergenic	Intergenic	-34642	NM_006910	5930	Hs.188553	NM_006910	HPRD:02964	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	retinoblastoma binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_18540	chr11	49168375	49168538	+	4.56640	NA	exon (NM_004476, exon 19 of 19)	exon (NM_004476, exon 19 of 19)	61766	NM_001014986	2346	Hs.654487	NM_004476	HPRD:02961	FOLH1	FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP	folate hydrolase (prostate-specific membrane antigen) 1	protein-coding
19-PTNLD28-TUMOR_peak_101726	chr8	145288345	145288433	+	4.56640	NA	intron (NM_001288814, intron 13 of 41)	intron (NM_001288814, intron 13 of 41)	29251	NR_107057	102465906		NR_107057		MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
19-PTNLD28-TUMOR_peak_67796	chr3	44240291	44240466	+	4.56640	NA	Intergenic	Intergenic	-43000	NM_001145030	375337	Hs.132125	NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific PAZ domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_17901	chr11	33564658	33564746	+	4.56640	NA	exon (NM_012194, exon 1 of 20)	exon (NM_012194, exon 1 of 20)	825	NM_012194	25758	Hs.502266	NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549-like	protein-coding
19-PTNLD28-TUMOR_peak_58263	chr2	216477639	216477810	+	4.56640	NA	non-coding (NR_037195, exon 10 of 10)	non-coding (NR_037195, exon 10 of 10)	159294	NR_110607	102724849	Hs.116161	NR_110607		LOC102724849	-	uncharacterized LOC102724849	ncRNA
19-PTNLD28-TUMOR_peak_12803	chr10	32186042	32186151	+	4.56640	NA	intron (NM_001270695, intron 3 of 18)	L1MCb|LINE|L1	11758	NM_001270699	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
19-PTNLD28-TUMOR_peak_59111	chr2	238586716	238586814	+	4.56640	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-14042	NM_004735	9208	Hs.471779	NM_004735	HPRD:04460	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	leucine rich repeat (in FLII) interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_108078	chrX	44112462	44112581	+	4.56640	NA	intron (NM_025184, intron 4 of 14)	L1PA7|LINE|L1	90402	NM_025184	80258	Hs.521953	NM_025184		EFHC2	MRX74|dJ1158H2.1	EF-hand domain (C-terminal) containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46815	chr19	4769640	4769728	+	4.56640	NA	promoter-TSS (NR_029607)	promoter-TSS (NR_029607)	567	NR_027148	284424	Hs.326728	NM_174947	HPRD:16628	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_104033	chr9	81283423	81283606	+	4.56640	NA	Intergenic	Intergenic	371523	NM_021154	29968	Hs.494261	NM_021154	HPRD:17918	PSAT1	EPIP|PSA|PSAT	phosphoserine aminotransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_8388	chr1	176798853	176798941	+	4.56640	NA	intron (NM_020318, intron 21 of 22)	intron (NM_020318, intron 21 of 22)	199684	NR_030163	574441		NR_030163		MIR488	MIRN488|hsa-mir-488	microRNA 488	ncRNA
19-PTNLD28-TUMOR_peak_109230	chrX	114827734	114827848	+	4.56640	NA	promoter-TSS (NM_001172335)	promoter-TSS (NM_001172335)	-28	NM_001136025	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_67332	chr3	30035954	30036059	+	4.56640	NA	intron (NM_001003792, intron 13 of 13)	L1PA4|LINE|L1	-60359	NR_046556	100873977	Hs.581453	NR_046556		RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_29968	chr14	37702179	37702267	+	4.56640	NA	intron (NM_138731, intron 2 of 13)	intron (NM_138731, intron 2 of 13)	35105	NM_001195296	145282	Hs.660396	NM_138731	HPRD:06029	MIPOL1	-	mirror-image polydactyly 1	protein-coding
19-PTNLD28-TUMOR_peak_12536	chr10	26650453	26650545	+	4.56640	NA	Intergenic	Intergenic	-76767	NM_019043	54518	Hs.310421	NM_019043	HPRD:16420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_100149	chr8	114792201	114792377	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-343047	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
19-PTNLD28-TUMOR_peak_24572	chr12	54793207	54793295	+	4.56640	NA	intron (NM_002205, intron 27 of 29)	intron (NM_002205, intron 27 of 29)	-8162	NM_001130968	25946	Hs.505653	NM_015481	HPRD:16448	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
19-PTNLD28-TUMOR_peak_13304	chr10	45693903	45694035	+	4.56640	NA	Intergenic	CpG	34507	NR_036112	100422988		NR_036112	miRBase:MI0014184	MIR3156-1	-	microRNA 3156-1	ncRNA
19-PTNLD28-TUMOR_peak_31478	chr14	78636600	78636708	+	4.56640	NA	promoter-TSS (NR_073547)	promoter-TSS (NR_073547)	-62	NR_073547	9369	Hs.368307	NM_004796		NRXN3	C14orf60	neurexin 3	protein-coding
19-PTNLD28-TUMOR_peak_33862	chr15	62405242	62405343	+	4.56640	NA	Intergenic	MIRb|SINE|MIR	46116	NM_207322	145741	Hs.202656	NM_207322	HPRD:14830	C2CD4A	FAM148A|NLF1	C2 calcium-dependent domain containing 4A	protein-coding
19-PTNLD28-TUMOR_peak_56142	chr2	145263032	145263120	+	4.56640	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-14105	NR_040248	100303491	Hs.560789	NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34916	chr15	83898363	83898508	+	4.56640	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-21665	NM_016073	50810	Hs.513954	NM_016073	HPRD:17096	HDGFRP3	HDGF-2|HDGF2|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding
19-PTNLD28-TUMOR_peak_12264	chr10	19820160	19820416	+	4.56640	NA	intron (NM_001142308, intron 32 of 39)	intron (NM_001142308, intron 32 of 39)	197191	NR_120646	101928834	Hs.676482	NR_120646	ENSG00000233968	LOC101928834	-	uncharacterized LOC101928834	ncRNA
19-PTNLD28-TUMOR_peak_52576	chr2	46670860	46670948	+	4.56640	NA	Intergenic	Intergenic	14575	NR_103805	101805491	Hs.304781	NR_103805	ENSG00000187600	LOC101805491	-	uncharacterized LOC101805491	ncRNA
19-PTNLD28-TUMOR_peak_50704	chr2	11633	11837	+	4.56640	NA	Intergenic	TAR1|Satellite|telo	34853	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_87046	chr6	35722382	35722470	+	4.56640	NA	Intergenic	LTR41|LTR|ERVL	17617	NM_001286574	221481	Hs.533066	NM_145028	HPRD:12901	ARMC12	C6orf81	armadillo repeat containing 12	protein-coding
19-PTNLD28-TUMOR_peak_8112	chr1	169585204	169585303	+	4.56640	NA	intron (NM_003005, intron 3 of 16)	intron (NM_003005, intron 3 of 16)	14124	NM_003005	6403	Hs.73800	NM_003005	HPRD:01433	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P (granule membrane protein 140kDa, antigen CD62)	protein-coding
19-PTNLD28-TUMOR_peak_56071	chr2	140547782	140547901	+	4.56640	NA	Intergenic	Intergenic	892947	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_61272	chr20	43461540	43461653	+	4.56640	NA	Intergenic	Intergenic	-22617	NM_001205317	140730	Hs.517065	NM_182970	HPRD:17977	RIMS4	C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma	regulating synaptic membrane exocytosis 4	protein-coding
19-PTNLD28-TUMOR_peak_109605	chrX	136930737	136930900	+	4.56640	NA	Intergenic	Intergenic	282472	NM_003413	7547	Hs.111227	NM_003413	HPRD:02225	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
19-PTNLD28-TUMOR_peak_75903	chr4	80354086	80354266	+	4.56640	NA	Intergenic	AluYb8|SINE|Alu	-24804	NM_033214	2712	Hs.98008	NM_033214	HPRD:15966	GK2	GKP2|GKTA	glycerol kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_44294	chr18	2895075	2895189	+	4.56640	NA	intron (NM_032048, intron 4 of 7)	intron (NM_032048, intron 4 of 7)	48104	NM_032048	84034	Hs.532815	NM_032048		EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
19-PTNLD28-TUMOR_peak_25049	chr12	66194918	66195006	+	4.56640	NA	intron (NR_026825, intron 1 of 1)	intron (NR_026825, intron 1 of 1)	-23278	NM_003484	8091	Hs.505924	NM_003483	HPRD:02827	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
19-PTNLD28-TUMOR_peak_59806	chr20	10951840	10952043	+	4.56640	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-62021	NR_109866	101929413	Hs.385604	NR_109866	ENSG00000232900	LOC101929413	-	uncharacterized LOC101929413	ncRNA
19-PTNLD28-TUMOR_peak_4476	chr1	79052340	79052534	+	4.56640	NA	Intergenic	Intergenic	-33651	NM_006820	10964	Hs.744918	NM_006820	HPRD:13728	IFI44L	C1orf29	interferon-induced protein 44-like	protein-coding
19-PTNLD28-TUMOR_peak_79533	chr5	36897880	36897968	+	4.56640	NA	intron (NM_015384, intron 1 of 45)	intron (NM_015384, intron 1 of 45)	21063	NM_133433	25836	Hs.481927	NM_015384	HPRD:10560	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	Nipped-B homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_48373	chr19	29218409	29218638	+	4.56640	NA	promoter-TSS (NR_110759)	promoter-TSS (NR_110759)	78	NR_110759	100420587	Hs.569956	NR_110759		LOC100420587	-	SHC SH2-domain binding protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_36390	chr16	13496673	13496806	+	4.56640	NA	Intergenic	AluSc8|SINE|Alu	501262	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_31422	chr14	77525931	77526117	+	4.56640	NA	non-coding (NR_110554, exon 2 of 4)	non-coding (NR_110554, exon 2 of 4)	16510	NR_110553	102724190	Hs.562528	NR_110553		LOC102724190	-	uncharacterized LOC102724190	ncRNA
19-PTNLD28-TUMOR_peak_97702	chr8	23656063	23656200	+	4.56640	NA	Intergenic	Intergenic	56189	NM_003155	6781	Hs.25590	NM_003155	HPRD:03115	STC1	STC	stanniocalcin 1	protein-coding
19-PTNLD28-TUMOR_peak_23319	chr12	19692890	19693014	+	4.56640	NA	Intergenic	Intergenic	99437	NM_001267043	121536	Hs.126497	NM_153207		AEBP2	-	AE binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_3375	chr1	48648285	48648373	+	4.56640	NA	promoter-TSS (NR_026749)	promoter-TSS (NR_026749)	-229	NR_026749	391037	Hs.585393	NR_026749		SKINTL	BTN12|SKINT1|SKINTP	Skint-like, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105741	chr9	120891973	120892119	+	4.56640	NA	Intergenic	L1PBb|LINE|L1	425593	NM_138554	7099	Hs.174312	NM_003266	HPRD:04325	TLR4	ARMD10|CD284|TLR-4|TOLL	toll-like receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_32964	chr15	33418819	33418928	+	4.56640	NA	intron (NM_001277313, intron 4 of 20)	intron (NM_001277313, intron 4 of 20)	-58640	NM_001103184	342184	Hs.657649	NM_198500	HPRD:07031	FMN1	FMN|LD	formin 1	protein-coding
19-PTNLD28-TUMOR_peak_64894	chr22	27486780	27486991	+	4.56640	NA	Intergenic	Intergenic	187630	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_101273	chr8	137287558	137287665	+	4.56640	NA	Intergenic	Intergenic	817895	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_36901	chr16	24320779	24320873	+	4.56640	NA	intron (NM_006539, intron 1 of 3)	intron (NM_006539, intron 1 of 3)	53952	NM_006539	10368	Hs.7235	NM_006539	HPRD:05910	CACNG3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_21241	chr11	113385758	113385849	+	4.56640	NA	Intergenic	Intergenic	-39802	NM_000795	1813	Hs.73893	NM_000795	HPRD:00539	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
19-PTNLD28-TUMOR_peak_30110	chr14	47492046	47492170	+	4.56640	NA	intron (NM_001113498, intron 8 of 16)	intron (NM_001113498, intron 8 of 16)	320341	NM_182830	161357	Hs.436380	NM_182830	HPRD:14352	MDGA2	MAMDC1|c14_5286	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
19-PTNLD28-TUMOR_peak_91816	chr7	29892859	29892947	+	4.56640	NA	intron (NM_001080529, intron 2 of 8)	intron (NM_001080529, intron 2 of 8)	46733	NM_001080529	644150	Hs.380698	NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_8113	chr1	169680805	169680893	+	4.56640	NA	promoter-TSS (NM_000655)	promoter-TSS (NM_000655)	-6	NM_000655	6402	Hs.728756	NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
19-PTNLD28-TUMOR_peak_33511	chr15	49015618	49015745	+	4.56640	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-77696	NM_000138	2200	Hs.591133	NM_000138	HPRD:00618	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
19-PTNLD28-TUMOR_peak_21056	chr11	109735646	109735782	+	4.56640	NA	Intergenic	MIRb|SINE|MIR	-228373	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
19-PTNLD28-TUMOR_peak_56401	chr2	154413884	154413977	+	4.56640	NA	Intergenic	L2c|LINE|L2	-78608	NM_019845	56475	Hs.100890	NM_019845	HPRD:18002	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
19-PTNLD28-TUMOR_peak_60122	chr20	20824734	20824822	+	4.56640	NA	Intergenic	Intergenic	-131512	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_65362	chr22	37040429	37040517	+	4.56640	NA	intron (NM_006078, intron 1 of 3)	intron (NM_006078, intron 1 of 3)	58217	NM_006078	10369	Hs.146766	NM_006078		CACNG2	MRD10	calcium channel, voltage-dependent, gamma subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_40247	chr17	13388758	13388846	+	4.56640	NA	Intergenic	Intergenic	116442	NM_006042	9955	Hs.462270	NM_006042	HPRD:04958	HS3ST3A1	30ST3A1|3OST3A1	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
19-PTNLD28-TUMOR_peak_99020	chr8	66923004	66923134	+	4.56640	NA	Intergenic	AluJr|SINE|Alu	-10722	NM_033105	85479	Hs.491885	NM_033105	HPRD:07474	DNAJC5B	CSP-beta	DnaJ (Hsp40) homolog, subfamily C, member 5 beta	protein-coding
19-PTNLD28-TUMOR_peak_67788	chr3	44100005	44100093	+	4.56640	NA	Intergenic	Intergenic	-55655	NR_029700	406929		NR_029700	miRBase:MI0000476	MIR138-1	MIRN138-1	microRNA 138-1	ncRNA
19-PTNLD28-TUMOR_peak_14497	chr10	79825841	79826016	+	4.56640	NA	Intergenic	Intergenic	32410	NM_033022	6229	Hs.280130	NM_001026	HPRD:03877	RPS24	DBA3|S24	ribosomal protein S24	protein-coding
19-PTNLD28-TUMOR_peak_59705	chr20	7821978	7822066	+	4.56640	NA	Intergenic	Intergenic	99071	NM_017545	54363	Hs.193640	NM_017545	HPRD:05429	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase (glycolate oxidase) 1	protein-coding
19-PTNLD28-TUMOR_peak_78917	chr5	10725232	10725340	+	4.56640	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	36101	NM_004394	1611	Hs.75189	NM_004394	HPRD:02977	DAP	-	death-associated protein	protein-coding
19-PTNLD28-TUMOR_peak_89464	chr6	131683344	131683442	+	4.56640	NA	Intergenic	Intergenic	112094	NM_004842	9465	Hs.486483	NM_004842	HPRD:16065	AKAP7	AKAP15|AKAP18	A kinase (PRKA) anchor protein 7	protein-coding
19-PTNLD28-TUMOR_peak_9936	chr1	211765618	211765770	+	4.56640	NA	Intergenic	Intergenic	-13595	NM_021194	7779	Hs.519469	NM_021194		SLC30A1	ZNT1|ZRC1	solute carrier family 30 (zinc transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_99454	chr8	89698077	89698228	+	4.56640	NA	Intergenic	L1HS|LINE|L1	-358435	NM_005941	4325	Hs.492187	NM_005941		MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16 (membrane-inserted)	protein-coding
19-PTNLD28-TUMOR_peak_81910	chr5	125729995	125730083	+	4.56640	NA	intron (NM_001146319, intron 1 of 13)	L3|LINE|CR1	-28830	NM_001146321	65983	Hs.363558	NM_023927	HPRD:11402	GRAMD3	NS3TP2	GRAM domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_17484	chr11	17874981	17875069	+	4.56640	NA	intron (NR_104041, intron 9 of 9)	intron (NR_104041, intron 9 of 9)	117530	NM_004976	3746	Hs.552896	NM_004976	HPRD:15936	KCNC1	KV3.1|KV4|NGK2	potassium voltage-gated channel, Shaw-related subfamily, member 1	protein-coding
19-PTNLD28-TUMOR_peak_56709	chr2	163685177	163685319	+	4.56640	NA	intron (NM_033272, intron 2 of 15)	intron (NM_033272, intron 2 of 15)	10009	NM_173162	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_4501	chr1	81624447	81624570	+	4.56640	NA	Intergenic	Intergenic	-540947	NM_001297704	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_74739	chr4	22238920	22239016	+	4.56640	NA	Intergenic	Intergenic	102321	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
19-PTNLD28-TUMOR_peak_70122	chr3	121708946	121709034	+	4.56640	NA	intron (NM_001199799, intron 7 of 7)	intron (NM_001199799, intron 7 of 7)	32137	NM_001199800	286676	Hs.98484	NM_175924	HPRD:13735	ILDR1	DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta	immunoglobulin-like domain containing receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_45348	chr18	38693963	38694101	+	4.56640	NA	Intergenic	Intergenic	406529	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
19-PTNLD28-TUMOR_peak_81095	chr5	89735854	89735942	+	4.56640	NA	Intergenic	AluYc|SINE|Alu	30081	NR_105024	731157	Hs.551062	NR_105024		LOC731157	-	uncharacterized LOC731157	ncRNA
19-PTNLD28-TUMOR_peak_108552	chrX	64254604	64254705	+	4.56640	NA	promoter-TSS (NM_001178032)	promoter-TSS (NM_001178032)	-30	NM_001243804	55906	Hs.28249	NM_018684	HPRD:06584	ZC4H2	HCA127|KIAA1166|WRWF|WWS	zinc finger, C4H2 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_79081	chr5	15993620	15993814	+	4.56640	NA	Intergenic	Intergenic	186180	NM_001102562	441061	Hs.662216	NM_001102562	ENSG00000183654	MARCH11	MARCH-XI	membrane-associated ring finger (C3HC4) 11	protein-coding
19-PTNLD28-TUMOR_peak_68464	chr3	55202138	55202228	+	4.56640	NA	Intergenic	L2b|LINE|L2	-240111	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_68816	chr3	65567883	65567973	+	4.56640	NA	intron (NM_001033057, intron 2 of 22)	L2a|LINE|L2	-311563	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28412	chr13	67221267	67221389	+	4.56640	NA	intron (NM_020403, intron 2 of 3)	L1MA3|LINE|L1	-177973	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_21774	chr11	122974093	122974305	+	4.56640	NA	intron (NM_024769, intron 1 of 6)	intron (NM_024769, intron 1 of 6)	-41156	NM_153201	3312	Hs.180414	NM_006597	HPRD:07205	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock 70kDa protein 8	protein-coding
19-PTNLD28-TUMOR_peak_27271	chr12	132829790	132829958	+	4.56640	NA	intron (NM_001122636, intron 5 of 10)	LTR13A|LTR|ERVK	-22103	NR_024563	100130238	Hs.536338	NR_024563		LOC100130238	-	uncharacterized LOC100130238	ncRNA
19-PTNLD28-TUMOR_peak_58978	chr2	235797175	235797278	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-63402	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_40474	chr17	18528926	18529097	+	4.56640	NA	promoter-TSS (NR_036647)	promoter-TSS (NR_036647)	-81	NR_036647	284047	Hs.448012	NR_036647	HPRD:08777	CCDC144B	-	coiled-coil domain containing 144B (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_51682	chr2	26879175	26879371	+	4.56640	NA	Intergenic	AluYb8|SINE|Alu	-15062	NM_001029881	130106	Hs.591579	NM_001029881	HPRD:18726	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
19-PTNLD28-TUMOR_peak_13208	chr10	43788797	43788885	+	4.56640	NA	Intergenic	Kanga1a|DNA|TcMar-Tc2	-26474	NM_145313	221002	Hs.125293	NM_145313	HPRD:15211	RASGEF1A	CG4853	RasGEF domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_89979	chr6	150657608	150657702	+	4.56640	NA	Intergenic	Intergenic	-32373	NM_203395	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_103149	chr9	40896929	40897017	+	4.56640	NA	Intergenic	Intergenic	-104861	NM_033160	26149	Hs.522147	NM_033160	HPRD:11342	ZNF658	-	zinc finger protein 658	protein-coding
19-PTNLD28-TUMOR_peak_71759	chr3	151451496	151451679	+	4.56640	NA	promoter-TSS (NM_207365)	promoter-TSS (NM_207365)	-117	NM_207365	344752	Hs.144710	NM_207365	HPRD:14705	AADACL2	-	arylacetamide deacetylase-like 2	protein-coding
19-PTNLD28-TUMOR_peak_77323	chr4	142102254	142102432	+	4.56640	NA	Intergenic	Intergenic	-39698	NM_001292002	27309	Hs.120766	NM_014487	HPRD:15775	ZNF330	HSA6591|NOA36	zinc finger protein 330	protein-coding
19-PTNLD28-TUMOR_peak_68366	chr3	52885444	52885603	+	4.56640	NA	intron (NM_198563, intron 3 of 8)	intron (NM_198563, intron 3 of 8)	-4955	NR_107031	102465866		NR_107031		MIR8064	hsa-mir-8064	microRNA 8064	ncRNA
19-PTNLD28-TUMOR_peak_72108	chr3	160799608	160799742	+	4.56640	NA	Intergenic	Intergenic	23008	NM_033169	8706	Hs.418062	NM_003781	HPRD:09119	B3GALNT1	B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3	beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)	protein-coding
19-PTNLD28-TUMOR_peak_78158	chr4	182583695	182583796	+	4.56640	NA	Intergenic	Intergenic	481923	NR_027107	90768	Hs.175465	NM_178838		MGC45800	-	uncharacterized LOC90768	ncRNA
19-PTNLD28-TUMOR_peak_53660	chr2	79604153	79604241	+	4.56640	NA	Intergenic	L1PA4|LINE|L1	123773	NR_110289	101927987	Hs.574704	NR_110289		LOC101927987	-	uncharacterized LOC101927987	ncRNA
19-PTNLD28-TUMOR_peak_24877	chr12	60429888	60429976	+	4.56640	NA	Intergenic	Intergenic	346814	NR_073056	9194	Hs.88156	NM_004731	HPRD:06791	SLC16A7	MCT2	solute carrier family 16 (monocarboxylate transporter), member 7	protein-coding
19-PTNLD28-TUMOR_peak_58753	chr2	230608592	230608759	+	4.56640	NA	Intergenic	SVA_D|Other|Other	-29389	NM_139072	92737	Hs.234074	NM_139072	HPRD:09531	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_63198	chr21	33918595	33918683	+	4.56640	NA	Intergenic	Intergenic	39206	NM_144659	140290	Hs.728804	NM_018277		TCP10L	C21orf77|TCP10A-2	t-complex 10-like	protein-coding
19-PTNLD28-TUMOR_peak_12374	chr10	23092555	23092643	+	4.56640	NA	Intergenic	Intergenic	-89096	NM_005028	5305	Hs.57079	NM_005028	HPRD:11931	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
19-PTNLD28-TUMOR_peak_42380	chr17	53426241	53426338	+	4.56640	NA	Intergenic	Intergenic	73052	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_80219	chr5	62074909	62074997	+	4.56640	NA	Intergenic	Intergenic	200391	NM_181506	100130733	Hs.721348	NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
19-PTNLD28-TUMOR_peak_13641	chr10	53410968	53411063	+	4.56640	NA	intron (NM_006258, intron 3 of 17)	L2c|LINE|L2	48340	NM_015235	23283	Hs.591358	NM_015235	HPRD:09900	CSTF2T	CstF-64T	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	protein-coding
19-PTNLD28-TUMOR_peak_92192	chr7	43098843	43098982	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-53286	NM_001287059	23072	Hs.164453	NM_015052		HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_105306	chr9	112060383	112060533	+	4.56640	NA	intron (NM_018424, intron 1 of 15)	intron (NM_018424, intron 1 of 15)	22786	NM_019114	54566	Hs.591901	NM_018424	HPRD:09940	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
19-PTNLD28-TUMOR_peak_71119	chr3	137103969	137104068	+	4.56640	NA	Intergenic	Intergenic	-379116	NM_004189	8403	Hs.248184	NM_004189		SOX14	SOX28	SRY (sex determining region Y)-box 14	protein-coding
19-PTNLD28-TUMOR_peak_83647	chr5	160264817	160264965	+	4.56640	NA	intron (NM_025153, intron 1 of 25)	intron (NM_025153, intron 1 of 25)	14328	NM_025153	23120	Hs.109358	NM_025153	HPRD:08637	ATP10B	ATPVB	ATPase, class V, type 10B	protein-coding
19-PTNLD28-TUMOR_peak_17626	chr11	20272587	20272686	+	4.56640	NA	Intergenic	Intergenic	-90766	NM_001029865	120237	Hs.558604	NM_001029865	HPRD:18721	DBX1	-	developing brain homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_56882	chr2	170384900	170385002	+	4.56640	NA	Intergenic	Intergenic	18739	NM_006063	10324	Hs.50550	NM_006063	HPRD:07610	KLHL41	KBTBD10|Krp1|NEM9|SARCOSIN	kelch-like family member 41	protein-coding
19-PTNLD28-TUMOR_peak_89512	chr6	133952644	133952801	+	4.56640	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-189563	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
19-PTNLD28-TUMOR_peak_28563	chr13	78492706	78492794	+	4.56640	NA	exon (NM_001201397, exon 2 of 8)	exon (NM_001201397, exon 2 of 8)	216	NM_003991	1910	Hs.82002	NM_000115	HPRD:08834	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
19-PTNLD28-TUMOR_peak_33709	chr15	57967749	57967944	+	4.56640	NA	intron (NM_001018091, intron 12 of 12)	intron (NM_001018091, intron 12 of 12)	-30873	NM_015532	81488	Hs.437256	NM_015532	HPRD:07575	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding
19-PTNLD28-TUMOR_peak_41684	chr17	42175678	42175766	+	4.56640	NA	intron (NM_001015053, intron 3 of 26)	intron (NM_001015053, intron 3 of 26)	25292	NM_001015053	10014	Hs.438782	NM_005474	HPRD:09246	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
19-PTNLD28-TUMOR_peak_13625	chr10	52677387	52677537	+	4.56640	NA	Intergenic	Intergenic	-32027	NM_001198820	29974	Hs.282795	NM_014576	HPRD:10627	A1CF	ACF|ACF64|ACF65|APOBEC1CF|ASP	APOBEC1 complementation factor	protein-coding
19-PTNLD28-TUMOR_peak_92925	chr7	65818597	65818745	+	4.56640	NA	intron (NM_003596, intron 4 of 5)	intron (NM_003596, intron 4 of 5)	46724	NR_026873	285908	Hs.50755	NM_181722	HPRD:14160	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
19-PTNLD28-TUMOR_peak_71524	chr3	146299992	146300100	+	4.56640	NA	Intergenic	MER61E|LTR|ERV1	23957	NM_001085420	389158	Hs.254692	NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_55919	chr2	135734812	135734952	+	4.56640	NA	intron (NM_001018044, intron 7 of 7)	AluJb|SINE|Alu	47366	NM_025052	80122	Hs.659395	NM_025052	HPRD:08016	MAP3K19	RCK|YSK4	mitogen-activated protein kinase kinase kinase 19	protein-coding
19-PTNLD28-TUMOR_peak_36144	chr16	9030447	9030535	+	4.56640	NA	promoter-TSS (NM_001286457)	promoter-TSS (NM_001286457)	95	NM_001286458	7874	Hs.386939	NM_003470	HPRD:03950	USP7	HAUSP|TEF1	ubiquitin specific peptidase 7 (herpes virus-associated)	protein-coding
19-PTNLD28-TUMOR_peak_27871	chr13	38069424	38069512	+	4.56640	NA	Intergenic	ERVL-E-int|LTR|ERVL	-10547	NR_125762	103695431	Hs.550637	NR_125762		LINC01048	-	long intergenic non-protein coding RNA 1048	ncRNA
19-PTNLD28-TUMOR_peak_89425	chr6	129204239	129204389	+	4.56640	NA	promoter-TSS (NM_000426)	promoter-TSS (NM_000426)	28	NM_000426	3908	Hs.200841	NM_000426	HPRD:01125	LAMA2	LAMM	laminin, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_674	chr1	10302319	10302426	+	4.56640	NA	intron (NM_015074, intron 2 of 46)	Tigger3a|DNA|TcMar-Tigger	31608	NM_015074	23095	Hs.97858	NM_015074	HPRD:05818	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_51296	chr2	16129918	16130045	+	4.56640	NA	Intergenic	Intergenic	-48136	NR_110230	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_70106	chr3	120831198	120831339	+	4.56640	NA	intron (NM_014980, intron 5 of 27)	L1PA10|LINE|L1	204218	NM_014980	9515	Hs.477315	NM_014980	ENSG00000145087	STXBP5L	LLGL4	syntaxin binding protein 5-like	protein-coding
19-PTNLD28-TUMOR_peak_59905	chr20	14972908	14972996	+	4.56640	NA	intron (NM_080676, intron 5 of 16)	intron (NM_080676, intron 5 of 16)	-62788	NR_037841	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	BA318C17.1|NCRNA00186	MACROD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_16808	chr11	4552761	4552930	+	4.56640	NA	Intergenic	L1PA6|LINE|L1	-13576	NM_001004137	119772	Hs.553567	NM_001004137	HPRD:15020	OR52M1	OR11-11|OR52M1P|OR52M3P	olfactory receptor, family 52, subfamily M, member 1	protein-coding
19-PTNLD28-TUMOR_peak_98323	chr8	39439381	39439492	+	4.56640	NA	Intergenic	LTR19C|LTR|ERV1	-2651	NM_001190956	8749	Hs.127930	NM_014237	HPRD:07469	ADAM18	ADAM27|tMDCIII	ADAM metallopeptidase domain 18	protein-coding
19-PTNLD28-TUMOR_peak_81848	chr5	123789050	123789346	+	4.56640	NA	Intergenic	Intergenic	-14985	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
19-PTNLD28-TUMOR_peak_56183	chr2	147908864	147908962	+	4.56640	NA	Intergenic	L1PA4|LINE|L1	564288	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein, cytoplasmic 1 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_92128	chr7	40855220	40855342	+	4.56640	NA	intron (NM_024728, intron 14 of 14)	L1PA16|LINE|L1	164256	NR_110831	101928744	Hs.639767	NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
19-PTNLD28-TUMOR_peak_108923	chrX	94216895	94216983	+	4.56640	NA	Intergenic	MIRc|SINE|MIR	1287927	NM_001171111	286499	Hs.110069	NM_173698	HPRD:06562	FAM133A	CT115	family with sequence similarity 133, member A	protein-coding
19-PTNLD28-TUMOR_peak_55237	chr2	119455539	119455627	+	4.56640	NA	Intergenic	L1ME4a|LINE|L1	-95041	NR_110272	101927709	Hs.274529	NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
19-PTNLD28-TUMOR_peak_57947	chr2	204876842	204876975	+	4.56640	NA	Intergenic	MLT1K-int|LTR|ERVL-MaLR	75437	NM_012092	29851	Hs.56247	NM_012092	HPRD:09196	ICOS	AILIM|CD278|CVID1	inducible T-cell co-stimulator	protein-coding
19-PTNLD28-TUMOR_peak_108029	chrX	41172822	41173035	+	4.56640	NA	Intergenic	Intergenic	-19723	NM_001356	1654	Hs.743263	NM_001356	HPRD:02154	DDX3X	DBX|DDX14|DDX3|HLP2	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_4050	chr1	64187288	64187434	+	4.56640	NA	Intergenic	Intergenic	-52329	NM_005012	4919	Hs.128753	NM_005012	HPRD:03821	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_99149	chr8	71092980	71093068	+	4.56640	NA	intron (NM_006540, intron 4 of 22)	FAM|SINE|Alu	-109462	NM_024504	63978	Hs.736037	NM_024504	HPRD:11457	PRDM14	PFM11	PR domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_97302	chr8	16637446	16637534	+	4.56640	NA	Intergenic	Intergenic	222184	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_66661	chr3	12512901	12513051	+	4.56640	NA	Intergenic	LTR88a|LTR|Gypsy?	-12955	NM_001145393	80746	Hs.335550	NM_025265	HPRD:10576	TSEN2	PCH2B|SEN2|SEN2L	TSEN2 tRNA splicing endonuclease subunit	protein-coding
19-PTNLD28-TUMOR_peak_60067	chr20	19354888	19355083	+	4.56640	NA	intron (NM_020689, intron 2 of 16)	intron (NM_020689, intron 2 of 16)	-89745	NR_024564	100130264	Hs.683814	NR_024564	ENSG00000179447	LOC100130264	-	uncharacterized LOC100130264	ncRNA
19-PTNLD28-TUMOR_peak_27450	chr13	23675664	23675858	+	4.56640	NA	Intergenic	Intergenic	-79299	NM_000231	6445	Hs.37167	NM_000231	HPRD:07039	SGCG	A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE	sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_99460	chr8	90547631	90547728	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-222296	NM_003821	8767	Hs.103755	NM_003821	HPRD:04585	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor-interacting serine-threonine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_88982	chr6	107386059	107386147	+	4.56640	NA	TTS (NM_001080450)	TTS (NM_001080450)	36727	NM_001142468	51250	Hs.486084	NM_016487	HPRD:12873	C6orf203	PRED31	chromosome 6 open reading frame 203	protein-coding
19-PTNLD28-TUMOR_peak_34204	chr15	69366842	69367003	+	4.56640	NA	intron (NR_031680, intron 3 of 4)	intron (NR_031680, intron 3 of 4)	-6268	NR_026949	283673	Hs.177927	NM_173610	HPRD:08746	LINC00277	NCRNA00277|TMEM84	long intergenic non-protein coding RNA 277	ncRNA
19-PTNLD28-TUMOR_peak_77456	chr4	146841457	146841545	+	4.56640	NA	intron (NM_178835, intron 1 of 14)	intron (NM_178835, intron 1 of 14)	18106	NM_178835	152485	Hs.633543	NM_178835	HPRD:14095	ZNF827	-	zinc finger protein 827	protein-coding
19-PTNLD28-TUMOR_peak_40267	chr17	14497469	14497595	+	4.56640	NA	Intergenic	Intergenic	290475	NR_026880	84815	Hs.597458	NM_032729		MGC12916	-	uncharacterized protein MGC12916	ncRNA
19-PTNLD28-TUMOR_peak_87575	chr6	43302343	43302431	+	4.56640	NA	Intergenic	Intergenic	-25857	NM_206922	401262	Hs.653165	NM_206922	HPRD:16755	CRIP3	TLP|TLP-A|bA480N24.2	cysteine-rich protein 3	protein-coding
19-PTNLD28-TUMOR_peak_88276	chr6	72842658	72842746	+	4.56640	NA	intron (NM_014989, intron 4 of 33)	MIR|SINE|MIR	-79812	NM_001168407	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_81164	chr5	92769198	92769362	+	4.56640	NA	intron (NR_109824, intron 4 of 5)	Tigger3c|DNA|TcMar-Tigger	137769	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_99181	chr8	72756148	72756286	+	4.56640	NA	promoter-TSS (NR_033651)	promoter-TSS (NR_033651)	-134	NR_033651	100132891	Hs.137674	NR_033651	ENSG00000235531	LOC100132891	-	uncharacterized LOC100132891	ncRNA
19-PTNLD28-TUMOR_peak_94846	chr7	111603305	111603514	+	4.56640	NA	intron (NM_014705, intron 8 of 51)	L1HS|LINE|L1	154848	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98924	chr8	59672037	59672135	+	4.56640	NA	Intergenic	Intergenic	-99682	NM_003580	8439	Hs.372000	NM_003580	HPRD:09117	NSMAF	FAN	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
19-PTNLD28-TUMOR_peak_56102	chr2	143066435	143066576	+	4.56640	NA	Intergenic	Intergenic	-177235	NM_018557	53353	Hs.656461	NM_018557	HPRD:16383	LRP1B	LRP-DIT|LRPDIT	low density lipoprotein receptor-related protein 1B	protein-coding
19-PTNLD28-TUMOR_peak_76911	chr4	123732922	123733018	+	4.56640	NA	Intergenic	SVA_D|Other|Other	-14893	NM_002006	2247	Hs.284244	NM_002006	HPRD:00622	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2 (basic)	protein-coding
19-PTNLD28-TUMOR_peak_88900	chr6	101251284	101251411	+	4.56640	NA	intron (NM_006828, intron 5 of 41)	THE1D|LTR|ERVL-MaLR	77901	NM_001284271	10973	Hs.486031	NM_006828	HPRD:09980	ASCC3	ASC1p200|HELIC1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
19-PTNLD28-TUMOR_peak_85251	chr6	9971760	9971874	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-440734	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_89169	chr6	113548142	113548235	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-630339	NM_002356	4082	Hs.519909	NM_002356	HPRD:07519	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine-rich protein kinase C substrate	protein-coding
19-PTNLD28-TUMOR_peak_11319	chr1	242058416	242058643	+	4.56640	NA	Intergenic	Intergenic	46496	NM_006027	9156	Hs.498248	NM_003686	HPRD:06932	EXO1	HEX1|hExoI	exonuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_3456	chr1	51528941	51529191	+	4.56640	NA	Intergenic	L1M4|LINE|L1	-38840	NM_001136508	284546	Hs.176177	NM_001136508	ENSG00000204006	C1orf185	-	chromosome 1 open reading frame 185	protein-coding
19-PTNLD28-TUMOR_peak_5273	chr1	107738205	107738357	+	4.56640	NA	intron (NM_001113226, intron 2 of 7)	L2a|LINE|L2	55536	NM_014917	22854	Hs.732535	NM_014917	HPRD:16389	NTNG1	Lmnt1	netrin G1	protein-coding
19-PTNLD28-TUMOR_peak_65232	chr22	33606230	33606392	+	4.56640	NA	Intergenic	Intergenic	-151934	NM_001135774	8224	Hs.608750	NM_003490	HPRD:04083	SYN3	-	synapsin III	protein-coding
19-PTNLD28-TUMOR_peak_88799	chr6	92496628	92496766	+	4.56640	NA	Intergenic	LTR42|LTR|ERVL	-96551	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_98669	chr8	49467561	49467649	+	4.56640	NA	intron (NR_105002, intron 2 of 3)	intron (NR_105002, intron 2 of 3)	3478	NR_105002	101929268	Hs.683934	NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
19-PTNLD28-TUMOR_peak_4468	chr1	78703439	78703552	+	4.56640	NA	intron (NR_027310, intron 1 of 5)	intron (NR_027310, intron 1 of 5)	8212	NR_027310	149047	Hs.352665	NM_144700	ENSG00000237413	MGC27382	-	uncharacterized MGC27382	ncRNA
19-PTNLD28-TUMOR_peak_34176	chr15	68763965	68764253	+	4.56640	NA	Intergenic	MER57B1|LTR|ERV1	-39617	NM_001004439	22801	Hs.436416	NM_012211	HPRD:05310	ITGA11	HsT18964	integrin, alpha 11	protein-coding
19-PTNLD28-TUMOR_peak_75937	chr4	81727606	81727701	+	4.56640	NA	intron (NM_001206997, intron 4 of 6)	L2a|LINE|L2	-224466	NM_001201	651	Hs.387411	NM_001201	HPRD:00208	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
19-PTNLD28-TUMOR_peak_107545	chrX	11404277	11404365	+	4.56640	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	41584	NM_001287242	395	Hs.435291	NM_001174	HPRD:02124	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
19-PTNLD28-TUMOR_peak_69382	chr3	98603984	98604154	+	4.56640	NA	intron (NM_080927, intron 1 of 15)	intron (NM_080927, intron 1 of 15)	16464	NM_080927	131566	Hs.203691	NM_080927	HPRD:10567	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_80326	chr5	66110385	66110473	+	4.56640	NA	intron (NM_198828, intron 3 of 5)	intron (NM_198828, intron 3 of 5)	-14175	NM_015183	375449	Hs.595458	NM_015183	HPRD:14195	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
19-PTNLD28-TUMOR_peak_15722	chr10	115345840	115345928	+	4.56640	NA	intron (NM_001177660, intron 12 of 12)	intron (NM_001177660, intron 12 of 12)	33106	NM_004132	3026	Hs.422542	NM_004132	HPRD:04890	HABP2	FSAP|HABP|HGFAL|PHBP	hyaluronan binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_32836	chr15	31047420	31047616	+	4.56640	NA	intron (NR_038253, intron 5 of 5)	L1ME1|LINE|L1	-62721	NR_072991	390561	Hs.721293	NR_072991		HERC2P10	-	hect domain and RLD 2 pseudogene 10	pseudo
19-PTNLD28-TUMOR_peak_13972	chr10	69895961	69896126	+	4.56640	NA	intron (NM_001256268, intron 5 of 23)	intron (NM_001256268, intron 5 of 23)	26853	NM_001256268	84665	Hs.55205	NM_032578	HPRD:10536	MYPN	CMD1DD|CMH22|MYOP|RCM4	myopalladin	protein-coding
19-PTNLD28-TUMOR_peak_18698	chr11	58167223	58167375	+	4.56640	NA	Intergenic	Intergenic	3583	NM_001005469	441608	Hs.553826	NM_001005469	HPRD:15038	OR5B3	OR11-239|OR5B13|OST129	olfactory receptor, family 5, subfamily B, member 3	protein-coding
19-PTNLD28-TUMOR_peak_85945	chr6	24205266	24205354	+	4.56640	NA	exon (NM_001195610, exon 9 of 11)	exon (NM_001195610, exon 9 of 11)	78896	NM_080723	140767	Hs.726270	NM_080723	HPRD:18285	NRSN1	VMP|p24	neurensin 1	protein-coding
19-PTNLD28-TUMOR_peak_42304	chr17	49073106	49073194	+	4.56640	NA	intron (NM_001251971, intron 12 of 26)	AluJr|SINE|Alu	51179	NM_001251971	9043	Hs.463439	NM_003971	HPRD:10398	SPAG9	CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
19-PTNLD28-TUMOR_peak_27701	chr13	31264446	31264653	+	4.56640	NA	Intergenic	LTR1|LTR|ERV1	-23066	NM_001204406	241	Hs.507658	NM_001629	HPRD:04742	ALOX5AP	FLAP	arachidonate 5-lipoxygenase-activating protein	protein-coding
19-PTNLD28-TUMOR_peak_3748	chr1	57035549	57035666	+	4.56640	NA	intron (NM_003713, intron 1 of 5)	L2c|LINE|L2	9650	NM_003713	8613	Hs.405156	NM_003713	HPRD:06179	PPAP2B	Dri42|LPP3|PAP2B|VCIP	phosphatidic acid phosphatase type 2B	protein-coding
19-PTNLD28-TUMOR_peak_70824	chr3	131140174	131140262	+	4.56640	NA	Intergenic	MER89|LTR|ERV1	39593	NR_033268	131870	Hs.282050	NM_152395	HPRD:08097	NUDT16	-	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding
19-PTNLD28-TUMOR_peak_29976	chr14	38255420	38255508	+	4.56640	NA	Intergenic	L1PA7|LINE|L1	-191139	NM_004496	3169	Hs.163484	NM_004496	HPRD:03801	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
19-PTNLD28-TUMOR_peak_107558	chrX	12026141	12026271	+	4.56640	NA	Intergenic	Intergenic	-130379	NM_014728	9758	Hs.657507	NM_014728	HPRD:10011	FRMPD4	PDZD10|PDZK10	FERM and PDZ domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_24065	chr12	48750505	48750593	+	4.56640	NA	Intergenic	Intergenic	-5520	NM_001172682	121274	Hs.23492	NM_152320	HPRD:08711	ZNF641	-	zinc finger protein 641	protein-coding
19-PTNLD28-TUMOR_peak_15689	chr10	114503047	114503150	+	4.56640	NA	intron (NM_145206, intron 7 of 7)	intron (NM_145206, intron 7 of 7)	-80157	NR_120684	103344931	Hs.458447	NR_120684		LOC103344931	-	uncharacterized LOC103344931	ncRNA
19-PTNLD28-TUMOR_peak_57282	chr2	182229583	182229778	+	4.56640	NA	Intergenic	Intergenic	-59301	NR_039637	100616213		NR_039637	miRBase:MI0016778	MIR4437	-	microRNA 4437	ncRNA
19-PTNLD28-TUMOR_peak_81969	chr5	127149354	127149442	+	4.56640	NA	Intergenic	Intergenic	160691	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
19-PTNLD28-TUMOR_peak_77504	chr4	148635788	148635876	+	4.56640	NA	Intergenic	Intergenic	-17621	NM_024605	79658	Hs.368631	NM_024605	HPRD:07949	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
19-PTNLD28-TUMOR_peak_17674	chr11	23561765	23561853	+	4.56640	NA	Intergenic	L1PB4|LINE|L1	-121073	NR_107021	102465860		NR_107021		MIR8054	hsa-mir-8054	microRNA 8054	ncRNA
19-PTNLD28-TUMOR_peak_19364	chr11	65902103	65902221	+	4.56640	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	64338	NM_018026	55690	Hs.644326	NM_018026	HPRD:06320	PACS1	MRD17	phosphofurin acidic cluster sorting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_84712	chr6	1271335	1271622	+	4.56640	NA	Intergenic	Intergenic	-41197	NM_033260	94234	Hs.591352	NM_033260	HPRD:17015	FOXQ1	HFH1	forkhead box Q1	protein-coding
19-PTNLD28-TUMOR_peak_30852	chr14	66510795	66510883	+	4.56640	NA	Intergenic	L2|LINE|L2	-442250	NR_110308	440184	Hs.412138	NM_001004331	HPRD:14708	LINC00238	C14orf53|NCRNA00238	long intergenic non-protein coding RNA 238	ncRNA
19-PTNLD28-TUMOR_peak_108965	chrX	100166796	100166884	+	4.56640	NA	Intergenic	Intergenic	17058	NM_212559	402415	Hs.364911	NM_212559	HPRD:11687	XKRX	XKR2|XPLAC|XRG2	XK, Kell blood group complex subunit-related, X-linked	protein-coding
19-PTNLD28-TUMOR_peak_13955	chr10	69457569	69457657	+	4.56640	NA	Intergenic	Intergenic	-1664	NM_013266	29119	Hs.21375	NM_013266	HPRD:09639	CTNNA3	ARVD13|VR22	catenin (cadherin-associated protein), alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_33002	chr15	34453956	34454044	+	4.56640	NA	intron (NM_024713, intron 2 of 9)	LTR10A|LTR|ERV1	48297	NM_024713	79768	Hs.633566	NM_024713	HPRD:07995	KATNBL1	C15orf29	katanin p80 subunit B-like 1	protein-coding
19-PTNLD28-TUMOR_peak_5700	chr1	115397486	115397626	+	4.56640	NA	non-coding (NR_104211, exon 1 of 33)	non-coding (NR_104211, exon 1 of 33)	132	NM_001282541	6847	Hs.112743	NM_003176	HPRD:03698	SYCP1	CT8|HOM-TES-14|SCP-1|SCP1	synaptonemal complex protein 1	protein-coding
19-PTNLD28-TUMOR_peak_98842	chr8	56115077	56115222	+	4.56640	NA	intron (NM_052898, intron 1 of 2)	intron (NM_052898, intron 1 of 2)	100132	NM_052898	114786	Hs.130197	NM_052898		XKR4	XRG4	XK, Kell blood group complex subunit-related family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_68886	chr3	68686264	68686510	+	4.56640	NA	Intergenic	Intergenic	295374	NM_001005527	151647	Hs.187873	NM_182522	HPRD:08343	FAM19A4	TAFA-4|TAFA4	family with sequence similarity 19 (chemokine (C-C motif)-like), member A4	protein-coding
19-PTNLD28-TUMOR_peak_57017	chr2	174075396	174075539	+	4.56640	NA	intron (NR_033882, intron 5 of 7)	intron (NR_033882, intron 5 of 7)	71297	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MLK7-AS1	-	MLK7 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_30125	chr14	48505228	48505491	+	4.56640	NA	Intergenic	L1PA8A|LINE|L1	-241142	NR_039996	100506433	Hs.547419	NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
19-PTNLD28-TUMOR_peak_108819	chrX	77378784	77379012	+	4.56640	NA	intron (NM_000291, intron 8 of 10)	intron (NM_000291, intron 8 of 10)	16281	NM_015975	51616	Hs.592248	NM_015975	HPRD:06739	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa	protein-coding
19-PTNLD28-TUMOR_peak_21908	chr11	125742161	125742260	+	4.56640	NA	Intergenic	LTR10A|LTR|ERV1	-11299	NM_145014	219844	Hs.98133	NM_145014	HPRD:08148	HYLS1	HLS	hydrolethalus syndrome 1	protein-coding
19-PTNLD28-TUMOR_peak_110308	chrY	23215075	23215163	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	297165	NM_001039567	140032	Hs.367761	NM_001039567	HPRD:15960	RPS4Y2	RPS4Y2P	ribosomal protein S4, Y-linked 2	protein-coding
19-PTNLD28-TUMOR_peak_35298	chr15	93150482	93150761	+	4.56640	NA	Intergenic	SVA_D|Other|Other	-35128	NR_021493	100144604	Hs.245476	NR_021493	ENSG00000258647	LINC00930	-	long intergenic non-protein coding RNA 930	ncRNA
19-PTNLD28-TUMOR_peak_81713	chr5	117136108	117136221	+	4.56640	NA	intron (NR_104997, intron 1 of 2)	L1PA16|LINE|L1	70108	NR_104997	102467224	Hs.134230	NR_104997		LOC102467224	-	uncharacterized LOC102467224	ncRNA
19-PTNLD28-TUMOR_peak_32669	chr15	27120607	27120741	+	4.56640	NA	intron (NM_000810, intron 3 of 10)	L2a|LINE|L2	8401	NM_001165037	2558	Hs.24969	NM_000810	HPRD:08840	GABRA5	-	gamma-aminobutyric acid (GABA) A receptor, alpha 5	protein-coding
19-PTNLD28-TUMOR_peak_93762	chr7	85362658	85362746	+	4.56640	NA	Intergenic	Intergenic	-611455	NM_152754	223117	Hs.201340	NM_152754	HPRD:15321	SEMA3D	Sema-Z2|coll-2	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
19-PTNLD28-TUMOR_peak_15242	chr10	102632147	102632236	+	4.56640	NA	Intergenic	Intergenic	-40135	NM_001136123	55719	Hs.447458	NM_018121	HPRD:12581	FAM178A	C10orf6	family with sequence similarity 178, member A	protein-coding
19-PTNLD28-TUMOR_peak_70476	chr3	126019987	126020226	+	4.56640	NA	Intergenic	Intergenic	56130	NM_014079	28999	Hs.272215	NM_014079	HPRD:07568	KLF15	KKLF	Kruppel-like factor 15	protein-coding
19-PTNLD28-TUMOR_peak_88280	chr6	73122071	73122164	+	4.56640	NA	Intergenic	Intergenic	45685	NM_001168411	22999	Hs.485729	NM_014989	HPRD:09435	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
19-PTNLD28-TUMOR_peak_81704	chr5	116366917	116367005	+	4.56640	NA	Intergenic	Intergenic	-269056	NR_104678	102467223	Hs.570916	NR_104678		LOC102467223	-	uncharacterized LOC102467223	ncRNA
19-PTNLD28-TUMOR_peak_944	chr1	14813144	14813315	+	4.56640	NA	Intergenic	Intergenic	-111984	NM_015209	23254	Hs.368823	NM_015209	HPRD:11122	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_46918	chr19	6601969	6602179	+	4.56640	NA	Intergenic	AluSp|SINE|Alu	-10911	NM_001252	970	Hs.501497	NM_001252	HPRD:18515	CD70	CD27L|CD27LG|TNFSF7	CD70 molecule	protein-coding
19-PTNLD28-TUMOR_peak_23455	chr12	26250107	26250214	+	4.56640	NA	Intergenic	Intergenic	27843	NM_030762	79365	Hs.177841	NM_030762	HPRD:16204	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family, member e41	protein-coding
19-PTNLD28-TUMOR_peak_52441	chr2	43767255	43767440	+	4.56640	NA	intron (NM_022065, intron 21 of 37)	intron (NM_022065, intron 21 of 37)	55766	NM_001083953	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_98882	chr8	57154609	57154705	+	4.56640	NA	Intergenic	Intergenic	30342	NM_024300	79145	Hs.436913	NM_024300	HPRD:13048	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_22601	chr12	4488743	4488831	+	4.56640	NA	5' UTR (NM_020638, exon 1 of 3)	5' UTR (NM_020638, exon 1 of 3)	107	NM_020638	8074	Hs.287370	NM_020638	HPRD:05648	FGF23	ADHR|FGFN|HPDR2|HYPF|PHPTC	fibroblast growth factor 23	protein-coding
19-PTNLD28-TUMOR_peak_15289	chr10	103362629	103362717	+	4.56640	NA	intron (NM_015448, intron 4 of 5)	intron (NM_015448, intron 4 of 5)	-1419	NR_036115	100423033		NR_036115		MIR3158-2	-	microRNA 3158-2	ncRNA
19-PTNLD28-TUMOR_peak_89215	chr6	116586358	116586446	+	4.56640	NA	Intergenic	L1PA13|LINE|L1	-11141	NM_021648	23270	Hs.284141	NM_021648	HPRD:18236	TSPYL4	dJ486I3.2	TSPY-like 4	protein-coding
19-PTNLD28-TUMOR_peak_82106	chr5	131763298	131763449	+	4.56640	NA	intron (NR_045116, intron 2 of 3)	intron (NR_045116, intron 2 of 3)	16908	NR_045116	441108	Hs.658288	NM_001013717	HPRD:18460	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
19-PTNLD28-TUMOR_peak_107449	chrX	6973926	6974014	+	4.56640	NA	intron (NM_012080, intron 3 of 3)	intron (NM_012080, intron 3 of 3)	-91931	NR_039924	100616467		NR_039924	miRBase:MI0017408	MIR4767	-	microRNA 4767	ncRNA
19-PTNLD28-TUMOR_peak_3957	chr1	62140043	62140131	+	4.56640	NA	Intergenic	AluSx|SINE|Alu	20173	NR_073400	414927	Hs.123471	NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_53209	chr2	67235822	67235923	+	4.56640	NA	Intergenic	Intergenic	-77706	NR_110564	102800447	Hs.144196	NR_110564		LOC102800447	-	uncharacterized LOC102800447	ncRNA
19-PTNLD28-TUMOR_peak_13920	chr10	65571899	65571990	+	4.56640	NA	Intergenic	SVA_D|Other|Other	290821	NM_001001330	221035	Hs.499833	NM_001001330	HPRD:16582	REEP3	C10orf74	receptor accessory protein 3	protein-coding
19-PTNLD28-TUMOR_peak_25715	chr12	97113936	97114024	+	4.56640	NA	Intergenic	Intergenic	-187021	NM_001135177	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_48674	chr19	35866013	35866101	+	4.56640	NA	Intergenic	AluJo|SINE|Alu	16569	NM_005304	2865	Hs.248055	NM_005304	HPRD:04823	FFAR3	FFA3R|GPR41	free fatty acid receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_39844	chr17	4823745	4823833	+	4.56640	NA	Intergenic	AluJb|SINE|Alu	-11803	NM_000173	2811	Hs.1472	NM_000173	HPRD:01976	GP1BA	BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|VWDP	glycoprotein Ib (platelet), alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_23821	chr12	42338019	42338228	+	4.56640	NA	Intergenic	L1ME3|LINE|L1	200550	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_56134	chr2	144658938	144659110	+	4.56640	NA	Intergenic	MER39|LTR|ERV1	-35610	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
19-PTNLD28-TUMOR_peak_3611	chr1	54429813	54430046	+	4.56640	NA	intron (NM_052940, intron 6 of 7)	intron (NM_052940, intron 6 of 7)	17930	NM_001256409	115353	Hs.40094	NM_052940	HPRD:14711	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding
19-PTNLD28-TUMOR_peak_69203	chr3	80357144	80357258	+	4.56640	NA	Intergenic	HERV30-int|LTR|ERV1	-540142	NM_002941	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_43530	chr17	74187696	74187824	+	4.56640	NA	intron (NM_052916, intron 2 of 18)	AluJb|SINE|Alu	48630	NM_052916	114804	Hs.500643	NM_052916	HPRD:15259	RNF157	-	ring finger protein 157	protein-coding
19-PTNLD28-TUMOR_peak_36679	chr16	20231878	20231966	+	4.56640	NA	Intergenic	Intergenic	106913	NM_001007242	2813	Hs.53985	NM_001502	HPRD:04279	GP2	ZAP75	glycoprotein 2 (zymogen granule membrane)	protein-coding
19-PTNLD28-TUMOR_peak_53691	chr2	81885513	81885652	+	4.56640	NA	Intergenic	LTR10F|LTR|ERV1	-191512	NR_110161	100507201	Hs.98589	NR_110161		LOC100507201	-	uncharacterized LOC100507201	ncRNA
19-PTNLD28-TUMOR_peak_54989	chr2	112730851	112731102	+	4.56640	NA	intron (NM_006343, intron 6 of 18)	intron (NM_006343, intron 6 of 18)	74785	NM_006343	10461	Hs.306178	NM_006343	HPRD:05269	MERTK	MER|RP38|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_82035	chr5	130172674	130172762	+	4.56640	NA	Intergenic	Intergenic	328323	NR_073488	3094	Hs.483305	NM_005340		HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78989	chr5	13921901	13921998	+	4.56640	NA	intron (NM_001369, intron 5 of 78)	intron (NM_001369, intron 5 of 78)	22640	NM_001369	1767	Hs.212360	NM_001369	HPRD:04514	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein, axonemal, heavy chain 5	protein-coding
19-PTNLD28-TUMOR_peak_92606	chr7	54788027	54788123	+	4.56640	NA	Intergenic	Intergenic	38864	NM_014302	23480	Hs.488282	NM_014302	HPRD:15318	SEC61G	SSS1	Sec61 gamma subunit	protein-coding
19-PTNLD28-TUMOR_peak_31402	chr14	77393798	77393939	+	4.56640	NA	Intergenic	L2b|LINE|L2	101143	NM_194287	145497	Hs.147276	NM_194287	HPRD:12621	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
19-PTNLD28-TUMOR_peak_97353	chr8	17762647	17762816	+	4.56640	NA	Intergenic	Intergenic	-9684	NM_004467	2267	Hs.491143	NM_004467	HPRD:09312	FGL1	HFREP1|HP-041|LFIRE-1|LFIRE1	fibrinogen-like 1	protein-coding
19-PTNLD28-TUMOR_peak_23375	chr12	22415385	22415546	+	4.56640	NA	intron (NM_003034, intron 2 of 4)	intron (NM_003034, intron 2 of 4)	72183	NM_003034	6489	Hs.408614	NM_003034	HPRD:03078	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_4180	chr1	67218139	67218227	+	4.56640	NA	promoter-TSS (NM_152665)	promoter-TSS (NM_152665)	43	NM_152665	200132	Hs.479226	NM_152665	HPRD:08287	TCTEX1D1	-	Tctex1 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72538	chr3	178061349	178061496	+	4.56640	NA	Intergenic	L1PA13|LINE|L1	-75567	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
19-PTNLD28-TUMOR_peak_37752	chr16	50394447	50394535	+	4.56640	NA	intron (NM_001173984, intron 2 of 16)	L2b|LINE|L2	8354	NM_013263	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_12447	chr10	24638820	24638908	+	4.56640	NA	intron (NM_001282767, intron 2 of 18)	intron (NM_001282767, intron 2 of 18)	74250	NR_030334	693188		NR_030334		MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
19-PTNLD28-TUMOR_peak_33673	chr15	56609169	56609260	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-48408	NM_001286449	374618	Hs.511476	NM_198524	HPRD:15493	TEX9	-	testis expressed 9	protein-coding
19-PTNLD28-TUMOR_peak_86429	chr6	30018663	30018751	+	4.56640	NA	intron (NR_026751, intron 3 of 5).6	L1MB7|LINE|L1	10254	NR_026751	80862	Hs.653168	NR_026751	ENSG00000204623	ZNRD1-AS1	C6orf12|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1AS	ZNRD1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98105	chr8	32957113	32957225	+	4.56640	NA	Intergenic	Intergenic	373495	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	-	fucosyltransferase 10 (alpha (1,3) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_34893	chr15	83240455	83240717	+	4.56640	NA	promoter-TSS (NM_001079533)	promoter-TSS (NM_001079533)	-13	NM_001079533	64506	Hs.459132	NM_030594	HPRD:09553	CPEB1	CEBP|CPE-BP1|CPEB|CPEB-1|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_8293	chr1	174084108	174084232	+	4.56640	NA	Intergenic	Intergenic	44255	NR_121197	102724601	Hs.563791	NR_121197		LOC102724601	-	uncharacterized LOC102724601	ncRNA
19-PTNLD28-TUMOR_peak_69287	chr3	89363722	89363847	+	4.56640	NA	intron (NM_182644, intron 3 of 6)	intron (NM_182644, intron 3 of 6)	207110	NM_182644	2042	Hs.123642	NM_005233	HPRD:01555	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
19-PTNLD28-TUMOR_peak_55457	chr2	122568977	122569072	+	4.56640	NA	Intergenic	Intergenic	55903	NR_048557	7247	Hs.75066	NM_004622	HPRD:08993	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
19-PTNLD28-TUMOR_peak_66630	chr3	11732752	11732970	+	4.56640	NA	intron (NM_001284390, intron 2 of 6)	MER102b|DNA|hAT-Charlie	29381	NM_001284390	9686	Hs.740389	NM_014667	HPRD:11672	VGLL4	VGL-4	vestigial-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_20279	chr11	78804047	78804239	+	4.56640	NA	intron (NM_001098816, intron 4 of 33)	MLT1J|LTR|ERVL-MaLR	309010	NR_030598	100126333		NR_030598	miRBase:MI0005543	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
19-PTNLD28-TUMOR_peak_30847	chr14	65888278	65888366	+	4.56640	NA	intron (NR_038170, intron 1 of 10)	Tigger2|DNA|TcMar-Tigger	8874	NR_038170	2530	Hs.597649	NM_004480	HPRD:03994	FUT8	-	fucosyltransferase 8 (alpha (1,6) fucosyltransferase)	protein-coding
19-PTNLD28-TUMOR_peak_66889	chr3	15326172	15326267	+	4.56640	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	30528	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_81710	chr5	116679859	116679947	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-71305	NR_046089	728342	Hs.434420	NR_046089		LINC00992	-	long intergenic non-protein coding RNA 992	ncRNA
19-PTNLD28-TUMOR_peak_48624	chr19	35203665	35203753	+	4.56640	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-21771	NM_001029997	339318	Hs.720472	NM_001029997	HPRD:18783	ZNF181	HHZ181	zinc finger protein 181	protein-coding
19-PTNLD28-TUMOR_peak_71913	chr3	156429832	156429933	+	4.56640	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	35429	NM_001184718	25976	Hs.744050	NM_015508	HPRD:18192	TIPARP	ARTD14|PARP7|pART14	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
19-PTNLD28-TUMOR_peak_39231	chr16	85932355	85932473	+	4.56640	NA	promoter-TSS (NM_002163)	promoter-TSS (NM_002163)	-360	NM_002163	3394	Hs.137427	NM_002163	HPRD:03336	IRF8	H-ICSBP|ICSBP|ICSBP1|IRF-8	interferon regulatory factor 8	protein-coding
19-PTNLD28-TUMOR_peak_104090	chr9	83879587	83879830	+	4.56640	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	423888	NM_005077	7088	Hs.197320	NM_005077	HPRD:02557	TLE1	ESG|ESG1|GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_40203	chr17	10585556	10585665	+	4.56640	NA	intron (NM_004589, intron 5 of 5)	intron (NM_004589, intron 5 of 5)	15275	NM_004589	6341	Hs.14511	NM_004589	HPRD:04705	SCO1	SCOD1	SCO1 cytochrome c oxidase assembly protein	protein-coding
19-PTNLD28-TUMOR_peak_17409	chr11	16120518	16120606	+	4.56640	NA	intron (NM_033326, intron 7 of 15)	intron (NM_033326, intron 7 of 15)	-129395	NR_106721	102464826		NR_106721		MIR6073	hsa-mir-6073	microRNA 6073	ncRNA
19-PTNLD28-TUMOR_peak_78396	chr4	187036960	187037072	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-28979	NM_015398	25854	Hs.744961	NM_015398	HPRD:16810	FAM149A	MSTP119	family with sequence similarity 149, member A	protein-coding
19-PTNLD28-TUMOR_peak_71809	chr3	152959063	152959151	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	79106	NM_002886	5912	Hs.98643	NM_002886		RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_40930	chr17	29672367	29672574	+	4.56640	NA	intron (NM_000267, intron 47 of 56)	CpG	-23703	NM_014210	2123	Hs.591198	NM_014210		EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding
19-PTNLD28-TUMOR_peak_25269	chr12	71354443	71354537	+	4.56640	NA	Intergenic	Intergenic	-39906	NM_002849	5801	Hs.506076	NM_002849	HPRD:04169	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase, receptor type, R	protein-coding
19-PTNLD28-TUMOR_peak_32085	chr14	101117921	101118032	+	4.56640	NA	Intergenic	ERVL-E-int|LTR|ERVL	-5629	NR_024096	283601	Hs.379802	NM_001007560	HPRD:16621	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
19-PTNLD28-TUMOR_peak_108106	chrX	45648653	45648767	+	4.56640	NA	Intergenic	Intergenic	-42180	NR_029636	407007		NR_029636	miRBase:MI0000299	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
19-PTNLD28-TUMOR_peak_109117	chrX	107244813	107244901	+	4.56640	NA	Intergenic	L1PA16|LINE|L1	-19257	NM_031273	56156	Hs.333130	NM_031273	HPRD:02258	TEX13B	TGC3B|TSGA5	testis expressed 13B	protein-coding
19-PTNLD28-TUMOR_peak_33463	chr15	46184263	46184351	+	4.56640	NA	Intergenic	L2|LINE|L2	257369	NM_021199	58472	Hs.511251	NM_021199	HPRD:18102	SQRDL	PRO1975	sulfide quinone reductase-like (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_23296	chr12	18699446	18699572	+	4.56640	NA	intron (NM_001288774, intron 26 of 32)	intron (NM_001288774, intron 26 of 32)	191484	NM_033123	89869	Hs.97542	NM_033123	HPRD:06996	PLCZ1	NYD-SP27|PLC-zeta-1|PLCzeta	phospholipase C, zeta 1	protein-coding
19-PTNLD28-TUMOR_peak_57521	chr2	192431114	192431263	+	4.56640	NA	Intergenic	Intergenic	-111610	NM_001254736	64859	Hs.591610	NM_022837		NABP1	OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_98786	chr8	54891096	54891199	+	4.56640	NA	non-coding (NR_109901, exon 10 of 12)	non-coding (NR_109901, exon 10 of 12)	43869	NM_201437	6917	Hs.491745	NM_006756	HPRD:03252	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A (SII), 1	protein-coding
19-PTNLD28-TUMOR_peak_30099	chr14	46185876	46185964	+	4.56640	NA	Intergenic	Intergenic	-347442	NR_102701	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA
19-PTNLD28-TUMOR_peak_23187	chr12	13686574	13686788	+	4.56640	NA	Intergenic	Intergenic	-157002	NR_036555	283422	Hs.448717	NM_182558	HPRD:08166	C12orf36	-	chromosome 12 open reading frame 36	ncRNA
19-PTNLD28-TUMOR_peak_81671	chr5	115084840	115084941	+	4.56640	NA	Intergenic	PRIMAX-int|LTR|ERV1	67515	NM_001801	1036	Hs.442378	NM_001801	HPRD:06806	CDO1	-	cysteine dioxygenase type 1	protein-coding
19-PTNLD28-TUMOR_peak_50307	chr19	55073322	55073428	+	4.56640	NA	Intergenic	L1M3c|LINE|L1	-11089	NM_001290271	11027	Hs.655593	NM_006866	HPRD:11992	LILRA2	CD85H|ILT1|LIR-7|LIR7	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2	protein-coding
19-PTNLD28-TUMOR_peak_33064	chr15	36487612	36487700	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	268599	NR_039735	100616293		NR_039735	miRBase:MI0016876	MIR4510	-	microRNA 4510	ncRNA
19-PTNLD28-TUMOR_peak_24916	chr12	63012381	63012516	+	4.56640	NA	Intergenic	Intergenic	14982	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_82049	chr5	130664345	130664433	+	4.56640	NA	intron (NM_020240, intron 2 of 5)	intron (NM_020240, intron 2 of 5)	64687	NM_020240	56990	Hs.508829	NM_020240	HPRD:16695	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
19-PTNLD28-TUMOR_peak_89203	chr6	116303608	116303743	+	4.56640	NA	intron (NM_002031, intron 2 of 7)	intron (NM_002031, intron 2 of 7)	-56219	NR_027338	728402	Hs.729953	NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_77546	chr4	150885321	150885409	+	4.56640	NA	Intergenic	L2c|LINE|L2	-114061	NM_001040260	166614	Hs.591683	NM_152619	HPRD:13122	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin-like kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_45366	chr18	39920542	39920639	+	4.56640	NA	intron (NR_046456, intron 5 of 7)	intron (NR_046456, intron 5 of 7)	153957	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
19-PTNLD28-TUMOR_peak_69118	chr3	75321985	75322118	+	4.56640	NA	Intergenic	Intergenic	58424	NR_039646	100616394		NR_039646	miRBase:MI0016787	MIR4444-1	MIR4444|hsa-mir-4444-1	microRNA 4444-1	ncRNA
19-PTNLD28-TUMOR_peak_52995	chr2	62448401	62448552	+	4.56640	NA	intron (NM_006577, intron 1 of 1)	L1ME2|LINE|L1	15515	NR_049824	100847087		NR_049824	miRBase:MI0018171	MIR5192	-	microRNA 5192	ncRNA
19-PTNLD28-TUMOR_peak_94943	chr7	117468115	117468209	+	4.56640	NA	intron (NM_033427, intron 2 of 22)	intron (NM_033427, intron 2 of 22)	45399	NM_033427	83992	Hs.592285	NM_033427	HPRD:09890	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_69191	chr3	78607323	78607527	+	4.56640	NA	Intergenic	Intergenic	461184	NM_001145845	6091	Hs.744218	NM_002941	HPRD:03890	ROBO1	DUTT1|SAX3	roundabout, axon guidance receptor, homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_76313	chr4	95855080	95855168	+	4.56640	NA	intron (NM_001203, intron 2 of 12)	intron (NM_001203, intron 2 of 12)	-62259	NM_001256792	658	Hs.598475	NM_001203	HPRD:04457	BMPR1B	ALK-6|ALK6|CDw293	bone morphogenetic protein receptor, type IB	protein-coding
19-PTNLD28-TUMOR_peak_37342	chr16	31265154	31265268	+	4.56640	NA	Intergenic	L2a|LINE|L2	-6077	NM_001145808	3684	Hs.172631	NM_000632	HPRD:00411	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin, alpha M (complement component 3 receptor 3 subunit)	protein-coding
19-PTNLD28-TUMOR_peak_26452	chr12	115723417	115723505	+	4.56640	NA	Intergenic	L1PA3|LINE|L1	-601492	NM_005996	6926	Hs.744016	NM_005996	HPRD:03373	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding
19-PTNLD28-TUMOR_peak_98073	chr8	31808753	31808966	+	4.56640	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	-74393	NR_104158	100856811	Hs.97362	NR_104156		NRG1-IT1	-	NRG1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_90207	chr6	157429082	157429227	+	4.56640	NA	intron (NM_020732, intron 6 of 19)	intron (NM_020732, intron 6 of 19)	316137	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_68462	chr3	55170850	55170960	+	4.56640	NA	Intergenic	L1PA2|LINE|L1	-208833	NM_020678	57408	Hs.591668	NM_020678	HPRD:13718	LRTM1	-	leucine-rich repeats and transmembrane domains 1	protein-coding
19-PTNLD28-TUMOR_peak_23768	chr12	38902101	38902267	+	4.56640	NA	Intergenic	L1PA6|LINE|L1	191627	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_65260	chr22	35627644	35627746	+	4.56640	NA	Intergenic	Intergenic	-25750	NR_027780	10042	Hs.588815	NM_005487	HPRD:05267	HMGXB4	HMG2L1|HMGBCG|THC211630	HMG box domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_69480	chr3	101703340	101703433	+	4.56640	NA	intron (NR_026934, intron 2 of 3)	intron (NR_026934, intron 2 of 3)	43683	NR_026934	152225	Hs.376768	NR_026934	ENSG00000214407	LOC152225	-	uncharacterized LOC152225	ncRNA
19-PTNLD28-TUMOR_peak_77790	chr4	157811511	157811599	+	4.56640	NA	intron (NR_036641, intron 1 of 6)	L2b|LINE|L2	80991	NM_016205	56034	Hs.570855	NM_016205		PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_72034	chr3	158984735	158984827	+	4.56640	NA	TTS (NM_001042705)	TTS (NM_001042705)	-6255	NM_001197108	29970	Hs.134665	NM_014575	HPRD:15302	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_69511	chr3	103785697	103785798	+	4.56640	NA	Intergenic	L2a|LINE|L2	160358	NR_030330	693127		NR_030330	miRBase:MI0003612	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
19-PTNLD28-TUMOR_peak_8687	chr1	182415377	182415503	+	4.56640	NA	Intergenic	Intergenic	-3816	NM_001137669	353299	Hs.121200	NM_032267	HPRD:17971	RGSL1	RGSL|RGSL2	regulator of G-protein signaling like 1	protein-coding
19-PTNLD28-TUMOR_peak_20515	chr11	89224606	89224721	+	4.56640	NA	promoter-TSS (NM_001291929)	promoter-TSS (NM_001291929)	70	NM_001143836	50507	Hs.371036	NM_016931	HPRD:09243	NOX4	KOX|KOX-1|RENOX	NADPH oxidase 4	protein-coding
19-PTNLD28-TUMOR_peak_37731	chr16	50003416	50003524	+	4.56640	NA	Intergenic	Intergenic	-55647	NR_104042	255919	Hs.59134	NM_153261	HPRD:08784	CNEP1R1	C16orf69|NEP1-R1|TMEM188|TMP125	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_19431	chr11	66601866	66601954	+	4.56640	NA	intron (NR_048553, intron 12 of 14)	intron (NR_048553, intron 12 of 14)	-8973	NM_001032279	9986	Hs.654972	NM_005133	HPRD:07289	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
19-PTNLD28-TUMOR_peak_102549	chr9	27194523	27194611	+	4.56640	NA	intron (NM_001290078, intron 9 of 20)	intron (NM_001290078, intron 9 of 20)	85428	NM_001290078	7010	Hs.89640	NM_000459	HPRD:02571	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK tyrosine kinase, endothelial	protein-coding
19-PTNLD28-TUMOR_peak_12484	chr10	25138476	25138564	+	4.56640	NA	3' UTR (NM_020200, exon 9 of 9)	3' UTR (NM_020200, exon 9 of 9)	103053	NM_020200	56952	Hs.405619	NM_020200	HPRD:17917	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_66179	chr3	1498761	1498933	+	4.56640	NA	Intergenic	LFSINE_Vert|SINE|SINE	364505	NM_001289081	27255	Hs.387300	NM_014461	HPRD:06242	CNTN6	NB3	contactin 6	protein-coding
19-PTNLD28-TUMOR_peak_59754	chr20	9554563	9554668	+	4.56640	NA	intron (NM_177990, intron 4 of 9)	intron (NM_177990, intron 4 of 9)	-58970	NR_109957	101929329	Hs.589878	NR_109957	ENSG00000225988	LAMP5-AS1	-	LAMP5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34103	chr15	67155330	67155505	+	4.56640	NA	Intergenic	Intergenic	154487	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
19-PTNLD28-TUMOR_peak_79670	chr5	41835865	41835972	+	4.56640	NA	intron (NM_000436, intron 7 of 16)	intron (NM_000436, intron 7 of 16)	-34214	NR_046635	100874002	Hs.375537	NR_046635		OXCT1-AS1	-	OXCT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83423	chr5	154534664	154534854	+	4.56640	NA	Intergenic	Intergenic	141499	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
19-PTNLD28-TUMOR_peak_40341	chr17	16586744	16586871	+	4.56640	NA	Intergenic	Intergenic	-6832	NM_014695	9720	Hs.745246	NM_014695	ENSG00000170160	CCDC144A	-	coiled-coil domain containing 144A	protein-coding
19-PTNLD28-TUMOR_peak_98249	chr8	38255069	38255271	+	4.56336	NA	intron (NM_001286819, intron 4 of 10)	L2b|LINE|L2	10521	NM_001199660	137994	Hs.696457	NM_144652	HPRD:08060	LETM2	-	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_62656	chr20	62711085	62711505	+	4.56336	NA	promoter-TSS (NM_000913)	promoter-TSS (NM_000913)	29	NM_001039467	10287	Hs.422336	NM_005873	HPRD:05461	RGS19	GAIP|RGSGAIP	regulator of G-protein signaling 19	protein-coding
19-PTNLD28-TUMOR_peak_62878	chr21	18884200	18884425	+	4.55868	NA	promoter-TSS (NM_001207066)	promoter-TSS (NM_001207066)	-912	NM_001338	1525	Hs.627078	NM_001338	HPRD:11804	CXADR	CAR|CAR4/6|HCAR	coxsackie virus and adenovirus receptor	protein-coding
19-PTNLD28-TUMOR_peak_109912	chrX	153151037	153151188	+	4.55868	NA	intron (NM_001278116, intron 1 of 28)	CpG	516	NM_001278116	3897	Hs.522818	NM_000425	HPRD:02394	L1CAM	CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_80492	chr5	69781693	69781912	+	4.55823	NA	promoter-TSS (NR_073404)	promoter-TSS (NR_073404)	-526	NR_073404	441081	Hs.721548	NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
19-PTNLD28-TUMOR_peak_25533	chr12	89748011	89748126	+	4.55823	NA	Intergenic	CpG-5623	-1432	NM_022652	1848	Hs.298654	NM_001946	HPRD:04124	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
19-PTNLD28-TUMOR_peak_73618	chr3	196734262	196734464	+	4.55733	NA	intron (NM_005929, intron 13 of 15)	intron (NM_005929, intron 13 of 15)	4586	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MFI2-AS1	-	MFI2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61489	chr20	45901707	45901839	+	4.55729	NA	intron (NM_001281772, intron 13 of 23)	intron (NM_001281772, intron 13 of 23)	-45473	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
19-PTNLD28-TUMOR_peak_23364	chr12	21680408	21680544	+	4.55729	NA	intron (NM_030572, intron 3 of 5)	CpG	1220	NM_030572	80763	Hs.130692	NM_030572		SPX	C12orf39	spexin hormone	protein-coding
19-PTNLD28-TUMOR_peak_35441	chr15	99640880	99640968	+	4.55729	NA	Intergenic	CpG	-4362	NM_015286	23336	Hs.207106	NM_015286	HPRD:07305	SYNM	DMN|SYN	synemin, intermediate filament protein	protein-coding
19-PTNLD28-TUMOR_peak_86999	chr6	35295351	35295441	+	4.55729	NA	Intergenic	Intergenic	-14939	NM_001171820	5467	Hs.696032	NM_006238	HPRD:02679	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator-activated receptor delta	protein-coding
19-PTNLD28-TUMOR_peak_64904	chr22	27620175	27620270	+	4.55729	NA	Intergenic	MIR|SINE|MIR	320967	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_23910	chr12	45662450	45662546	+	4.55729	NA	intron (NM_001142679, intron 1 of 19)	intron (NM_001142679, intron 1 of 19)	-23968	NM_001142678	196527	Hs.505339	NM_001025356	HPRD:18746	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
19-PTNLD28-TUMOR_peak_21747	chr11	122619823	122619931	+	4.55729	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	-89378	NM_019604	56253	Hs.159523	NM_019604	HPRD:16760	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
19-PTNLD28-TUMOR_peak_87207	chr6	37480333	37480455	+	4.55637	NA	Intergenic	Intergenic	-12694	NM_138493	154467	Hs.284207	NM_138493	HPRD:18561	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
19-PTNLD28-TUMOR_peak_38557	chr16	70558528	70558648	+	4.55637	NA	intron (NM_012426, intron 1 of 25)	AluSx|SINE|Alu	897	NM_012426	23450	Hs.514435	NM_012426		SF3B3	RSE1|SAP130|SF3b130|STAF130	splicing factor 3b, subunit 3, 130kDa	protein-coding
19-PTNLD28-TUMOR_peak_84250	chr5	176036926	176037054	+	4.55637	NA	intron (NM_052899, intron 1 of 1)	CpG	141	NM_052899	114787	Hs.150549	NM_052899	HPRD:11169	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
19-PTNLD28-TUMOR_peak_34843	chr15	82648000	82648103	+	4.55291	NA	intron (NR_004847, intron 1 of 4).2	CpG	697	NR_004847	100134869	Hs.735222	NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_17530	chr11	18929412	18929581	+	4.55255	NA	Intergenic	Intergenic	27053	NM_147199	259249	Hs.711459	NM_147199	HPRD:06246	MRGPRX1	GPCR|MGRG2|MRGX1|SNSR4	MAS-related GPR, member X1	protein-coding
19-PTNLD28-TUMOR_peak_39292	chr16	87695256	87695367	+	4.55255	NA	intron (NR_073379, intron 2 of 5)	intron (NR_073379, intron 2 of 5)	58818	NM_001271605	57338	Hs.592068	NM_020655	HPRD:05589	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_105186	chr9	110034298	110034433	+	4.55255	NA	Intergenic	SVA_F|Other|Other	-11152	NM_002874	5887	Hs.521640	NM_002874	HPRD:06772	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_3828	chr1	59330472	59330915	+	4.55255	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	79870	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA
19-PTNLD28-TUMOR_peak_61568	chr20	46663690	46663778	+	4.55255	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-44873	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
19-PTNLD28-TUMOR_peak_1302	chr1	21141298	21141435	+	4.55255	NA	intron (NM_001198802, intron 32 of 34)	SVA_E|Other|Other	-28185	NM_016287	50809	Hs.142442	NM_016287	HPRD:11026	HP1BP3	HP1-BP74	heterochromatin protein 1, binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_19664	chr11	69275455	69275553	+	4.55255	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-24825	NR_120543	101928292	Hs.736219	NR_120542		LINC01488	-	long intergenic non-protein coding RNA 1488	ncRNA
19-PTNLD28-TUMOR_peak_91099	chr7	5602689	5602818	+	4.55134	NA	Intergenic	Intergenic	-29683	NM_003088	6624	Hs.118400	NM_003088	HPRD:04068	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10240	chr1	222884800	222884914	+	4.55134	NA	intron (NM_022831, intron 1 of 9)	intron (NM_022831, intron 1 of 9)	1007	NM_022831	64853	Hs.156625	NM_022831	HPRD:07798	AIDA	C1orf80	axin interactor, dorsalization associated	protein-coding
19-PTNLD28-TUMOR_peak_85822	chr6	20129659	20129747	+	4.54927	NA	intron (NR_073465, intron 2 of 9)	intron (NR_073465, intron 2 of 9)	82992	NR_073465	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_95913	chr7	141645384	141645472	+	4.54927	NA	intron (NM_001301167, intron 2 of 5)	intron (NM_001301167, intron 2 of 5)	1355	NM_013252	23601	Hs.446235	NM_013252	HPRD:09229	CLEC5A	CLECSF5|MDL-1|MDL1	C-type lectin domain family 5, member A	protein-coding
19-PTNLD28-TUMOR_peak_56855	chr2	169821105	169821242	+	4.54927	NA	intron (NM_003742, intron 17 of 27)	intron (NM_003742, intron 17 of 27)	63423	NM_001081686	57818	Hs.283963	NM_021176		G6PC2	IGRP	glucose-6-phosphatase, catalytic, 2	protein-coding
19-PTNLD28-TUMOR_peak_45087	chr18	28805749	28805837	+	4.54927	NA	Intergenic	Intergenic	-62974	NM_004948	1823	Hs.567260	NM_004948	HPRD:00511	DSC1	CDHF1|DG2/DG3	desmocollin 1	protein-coding
19-PTNLD28-TUMOR_peak_58719	chr2	228609124	228609250	+	4.54927	NA	Intergenic	Intergenic	-26442	NM_025243	80704	Hs.221597	NM_025243	HPRD:07311	SLC19A3	BBGD|THMD2|THTR2	solute carrier family 19 (thiamine transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_36950	chr16	25209339	25209595	+	4.54927	NA	Intergenic	Intergenic	-18818	NM_001169	343	Hs.176658	NM_001169	HPRD:04778	AQP8	AQP-8	aquaporin 8	protein-coding
19-PTNLD28-TUMOR_peak_29817	chr14	34264299	34264391	+	4.54927	NA	intron (NM_001165893, intron 9 of 10)	intron (NM_001165893, intron 9 of 10)	155939	NM_022073	112399	Hs.135507	NM_022073	HPRD:06972	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia-inducible factor 3	protein-coding
19-PTNLD28-TUMOR_peak_51331	chr2	16866326	16866501	+	4.54927	NA	Intergenic	Intergenic	-19279	NM_030797	81553	Hs.467769	NM_030797	HPRD:07729	FAM49A	-	family with sequence similarity 49, member A	protein-coding
19-PTNLD28-TUMOR_peak_86757	chr6	32765301	32765465	+	4.54927	NA	Intergenic	Intergenic	19442	NM_002120	3112	Hs.1802	NM_002120	HPRD:08368	HLA-DOB	DOB	major histocompatibility complex, class II, DO beta	protein-coding
19-PTNLD28-TUMOR_peak_25043	chr12	66122923	66123017	+	4.54927	NA	Intergenic	CpG	-86818	NR_120431	100507065	Hs.591038	NR_120431	ENSG00000250748	LOC100507065	-	uncharacterized LOC100507065	ncRNA
19-PTNLD28-TUMOR_peak_89408	chr6	127837492	127837580	+	4.54927	NA	exon (NM_001012279, exon 2 of 12)	exon (NM_001012279, exon 2 of 12)	2964	NM_001012279	387104	Hs.319247	NM_001012279	HPRD:16661	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding
19-PTNLD28-TUMOR_peak_92677	chr7	55946410	55946531	+	4.54927	NA	Intergenic	Intergenic	-15988	NM_207366	346288	Hs.453629	NM_207366	HPRD:16972	SEPT14	-	septin 14	protein-coding
19-PTNLD28-TUMOR_peak_30613	chr14	60631591	60631736	+	4.54647	NA	intron (NM_016029, intron 1 of 6)	intron (NM_016029, intron 1 of 6)	548	NM_016029	51635	Hs.59719	NM_016029	HPRD:16802	DHRS7	SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase (SDR family) member 7	protein-coding
19-PTNLD28-TUMOR_peak_103715	chr9	72286951	72287164	+	4.54647	NA	intron (NM_001163, intron 1 of 12)	CpG	218	NM_001163	320	Hs.171939	NM_001163	HPRD:03879	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta (A4) precursor protein-binding, family A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11416	chr1	244899362	244899450	+	4.54647	NA	Intergenic	LTR8|LTR|ERV1	83056	NR_123736	51029	Hs.498317	NM_016076	HPRD:15153	DESI2	C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
19-PTNLD28-TUMOR_peak_37981	chr16	56677060	56677180	+	4.54647	NA	promoter-TSS (NR_003658)	promoter-TSS (NR_003658)	-479	NR_027781	326343	Hs.679600	NM_175620		MT1DP	MTM	metallothionein 1D, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7980	chr1	167425033	167425171	+	4.54647	NA	intron (NM_198053, intron 1 of 7)	CpG	62745	NM_198053	919	Hs.156445	NM_000734	HPRD:01729	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
19-PTNLD28-TUMOR_peak_56932	chr2	172016336	172016424	+	4.54590	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	1030	NM_012290	9874	Hs.744917	NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_66387	chr3	8723689	8723856	+	4.54590	NA	Intergenic	HERVE-int|LTR|ERV1	-30008	NM_001256749	51066	Hs.736935	NM_015931	HPRD:11267	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_94621	chr7	104003558	104003660	+	4.54487	NA	intron (NM_199000, intron 1 of 2)	LTR8|LTR|ERV1	34505	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
19-PTNLD28-TUMOR_peak_35721	chr16	1429550	1429656	+	4.54487	NA	promoter-TSS (NM_001193389)	promoter-TSS (NM_001193389)	81	NM_001276414	64718	Hs.643536	NM_023076	HPRD:15612	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unkempt family zinc finger-like	protein-coding
19-PTNLD28-TUMOR_peak_39994	chr17	7476865	7477081	+	4.54417	NA	intron (NR_037926, intron 12 of 21)	CpG	949	NM_001204510	1973	Hs.129673	NM_001416	HPRD:04030	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
19-PTNLD28-TUMOR_peak_34485	chr15	74676237	74676357	+	4.54417	NA	Intergenic	Intergenic	-16216	NM_000781	1583	Hs.303980	NM_000781	HPRD:00326	CYP11A1	CYP11A|CYPXIA1|P450SCC	cytochrome P450, family 11, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_47329	chr19	11486241	11486331	+	4.54314	NA	exon (NM_175871, exon 2 of 2)	exon (NM_175871, exon 2 of 2)	903	NM_175871	126074	Hs.631619	NM_175871	HPRD:08179	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_46422	chr18	77512474	77512578	+	4.53482	NA	intron (NM_048368, intron 11 of 11)	intron (NM_048368, intron 11 of 11)	71096	NM_001202504	9150	Hs.465490	NM_004715	HPRD:05377	CTDP1	CCFDN|FCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_103331	chr9	45746560	45746722	+	4.53256	NA	Intergenic	CpG	-370302	NR_103714	100289124	Hs.567050	NM_001024608	ENSG00000237198	FAM27E2	FAM27E1	family with sequence similarity 27, member E2	ncRNA
19-PTNLD28-TUMOR_peak_51587	chr2	25142545	25142711	+	4.53256	NA	promoter-TSS (NM_004036)	promoter-TSS (NM_004036)	-573	NM_004036	109	Hs.467898	NM_004036	HPRD:02620	ADCY3	AC3	adenylate cyclase 3	protein-coding
19-PTNLD28-TUMOR_peak_25131	chr12	68115189	68115305	+	4.53256	NA	intron (NR_110063, intron 2 of 4)	intron (NR_110063, intron 2 of 4)	8008	NR_110063	101927901	Hs.369609	NR_110063	ENSG00000255970	LOC101927901	-	uncharacterized LOC101927901	ncRNA
19-PTNLD28-TUMOR_peak_2588	chr1	39037667	39037835	+	4.53015	NA	Intergenic	Intergenic	287744	NM_022157	64121	Hs.532461	NM_022157	HPRD:12198	RRAGC	GTR2|RAGC|TIB929	Ras-related GTP binding C	protein-coding
19-PTNLD28-TUMOR_peak_41839	chr17	43669838	43669968	+	4.53015	NA	Intergenic	L1M7|LINE|L1	9845	NR_026901	644172	Hs.448859	NR_026901		LOC644172	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_99693	chr8	100905762	100905997	+	4.53015	NA	5' UTR (NM_004374, exon 1 of 4)	5' UTR (NM_004374, exon 1 of 4)	363	NM_004374	1345	Hs.351875	NM_004374	HPRD:00494	COX6C	-	cytochrome c oxidase subunit VIc	protein-coding
19-PTNLD28-TUMOR_peak_99778	chr8	102131806	102132133	+	4.53015	NA	Intergenic	Intergenic	67687	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
19-PTNLD28-TUMOR_peak_31165	chr14	71822507	71822678	+	4.53015	NA	Intergenic	LTR67B|LTR|ERVL	-42462	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_100833	chr8	128879336	128879539	+	4.53015	NA	Intergenic	Intergenic	-23437	NR_003367	5820	Hs.133107	NR_003367	ENSG00000249859	PVT1	LINC00079|NCRNA00079	Pvt1 oncogene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_92546	chr7	50861226	50861411	+	4.53015	NA	promoter-TSS (NM_001001555)	promoter-TSS (NM_001001555)	-159	NM_001001555	2887	Hs.164060	NM_005311	HPRD:03312	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor-bound protein 10	protein-coding
19-PTNLD28-TUMOR_peak_16195	chr10	127751965	127752325	+	4.53015	NA	intron (NM_001288975, intron 14 of 18)	intron (NM_001288975, intron 14 of 18)	-90303	NR_102707	101410540	Hs.557889	NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98609	chr8	48100854	48100999	+	4.53015	NA	promoter-TSS (NR_037168)	promoter-TSS (NR_037168)	-4	NR_037168	100287846	Hs.21550	NR_037168		LOC100287846	-	patched 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_109115	chrX	107069763	107069989	+	4.53015	NA	intron (NM_052817, intron 1 of 9)	CpG	792	NM_052817	11043	Hs.12256	NM_012216		MID2	FXY2|MRX101|RNF60|TRIM1	midline 2	protein-coding
19-PTNLD28-TUMOR_peak_12533	chr10	26505140	26505333	+	4.53015	NA	promoter-TSS (NM_001134366)	promoter-TSS (NM_001134366)	0	NM_000818	2572	Hs.231829	NM_000818	HPRD:11817	GAD2	GAD65	glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)	protein-coding
19-PTNLD28-TUMOR_peak_100633	chr8	125902658	125902783	+	4.53015	NA	Intergenic	Intergenic	-51530	NR_027321	157381	Hs.638933	NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
19-PTNLD28-TUMOR_peak_105410	chr9	113799983	113800134	+	4.53015	NA	intron (NM_057159, intron 1 of 4)	CpG	307	NM_001401	1902	Hs.126667	NM_001401	HPRD:03790	LPAR1	EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1	lysophosphatidic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_42543	chr17	56064231	56064341	+	4.53015	NA	intron (NM_007146, intron 1 of 5)	intron (NM_007146, intron 1 of 5)	1329	NM_007146	7716	Hs.463569	NM_007146		VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_44376	chr18	5295365	5295519	+	4.52926	NA	intron (NM_001243704, intron 1 of 3)	CpG	259	NM_001243702	7541	Hs.592340	NM_003409	HPRD:03674	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
19-PTNLD28-TUMOR_peak_29599	chr14	24801606	24801864	+	4.52844	NA	exon (NM_139247, exon 4 of 26)	exon (NM_139247, exon 4 of 26)	2542	NM_139247	196883	Hs.443428	NM_139247	HPRD:11614	ADCY4	AC4	adenylate cyclase 4	protein-coding
19-PTNLD28-TUMOR_peak_86656	chr6	31782062	31782215	+	4.52656	NA	intron (NM_005527, intron 1 of 1).2	AluYc|SINE|Alu	697	NM_005527	3305	Hs.690634	NM_005527	HPRD:00776	HSPA1L	HSP70-1L|HSP70-HOM|HSP70T|hum70t	heat shock 70kDa protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_23342	chr12	20521107	20521238	+	4.52564	NA	Intergenic	Intergenic	-1007	NM_000921	5139	Hs.386791	NM_000921	HPRD:00441	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A	phosphodiesterase 3A, cGMP-inhibited	protein-coding
19-PTNLD28-TUMOR_peak_97204	chr8	12070440	12070611	+	4.52564	NA	Intergenic	Intergenic	-18901	NM_001083537	85002	Hs.675799	NM_001083537	HPRD:17515	FAM86B1	-	family with sequence similarity 86, member B1	protein-coding
19-PTNLD28-TUMOR_peak_37495	chr16	33458772	33458893	+	4.52564	NA	Intergenic	Intergenic	104411	NR_046943	100873777		NR_046943	ENSG00000206787	RNU6-76P	RNU6-76	RNA, U6 small nuclear 76, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_45144	chr18	30349915	30350003	+	4.52533	NA	exon (NM_020805, exon 2 of 9)	exon (NM_020805, exon 2 of 9)	3015	NM_020805	57565	Hs.446164	NM_020805	HPRD:17238	KLHL14	-	kelch-like family member 14	protein-coding
19-PTNLD28-TUMOR_peak_27079	chr12	126676111	126676324	+	4.52533	NA	Intergenic	Intergenic	95679	NR_110053	101927464	Hs.443932	NR_110053	ENSG00000256342	LOC101927464	-	uncharacterized LOC101927464	ncRNA
19-PTNLD28-TUMOR_peak_40836	chr17	27439878	27440067	+	4.52533	NA	intron (NM_203318, intron 15 of 40)	intron (NM_203318, intron 15 of 40)	-37345	NM_004740	9220	Hs.462590	NM_004740		TIAF1	MAJN|SPR210	TGFB1-induced anti-apoptotic factor 1	protein-coding
19-PTNLD28-TUMOR_peak_37354	chr16	31465178	31465282	+	4.52420	NA	Intergenic	MER102a|DNA|hAT-Charlie	-4364	NM_001288767	79798	Hs.732945	NM_024742	HPRD:07809	ARMC5	-	armadillo repeat containing 5	protein-coding
19-PTNLD28-TUMOR_peak_7444	chr1	157965120	157965213	+	4.52420	NA	intron (NM_001286349, intron 1 of 12)	intron (NM_001286349, intron 1 of 12)	2103	NM_018240	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_74319	chr4	8183633	8183756	+	4.52298	NA	Intergenic	Intergenic	-17366	NM_018986	54436	Hs.479116	NM_018986	HPRD:11556	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
19-PTNLD28-TUMOR_peak_40763	chr17	26578315	26578429	+	4.52080	NA	Intergenic	CpG	3902	NR_002181	23614	Hs.744962	NR_002181	HPRD:09437	PPY2	-	pancreatic polypeptide 2	pseudo
19-PTNLD28-TUMOR_peak_14328	chr10	75403826	75404133	+	4.52080	NA	TTS (NM_001114133)	TTS (NM_001114133)	-2464	NM_021245	58529	Hs.238756	NM_021245	HPRD:05725	MYOZ1	CS-2|FATZ|MYOZ	myozenin 1	protein-coding
19-PTNLD28-TUMOR_peak_52819	chr2	54777376	54777577	+	4.52080	NA	intron (NM_003128, intron 2 of 35)	intron (NM_003128, intron 2 of 35)	-8055	NM_178313	6711	Hs.503178	NM_003128	HPRD:01683	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin, beta, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_80509	chr5	70256469	70256563	+	4.52080	NA	Intergenic	MER82|DNA|TcMar-Tigger	35748	NM_000344	6606	Hs.535788	NM_000344	HPRD:02646	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
19-PTNLD28-TUMOR_peak_99118	chr8	70246318	70246487	+	4.52080	NA	Intergenic	Intergenic	114077	NR_110433	100505739	Hs.127115	NR_110433		LOC100505739	-	uncharacterized LOC100505739	ncRNA
19-PTNLD28-TUMOR_peak_44280	chr18	2571210	2571298	+	4.52080	NA	promoter-TSS (NM_006101)	promoter-TSS (NM_006101)	235	NM_022840	64863	Hs.126888	NM_022840	HPRD:14390	METTL4	HsT661	methyltransferase like 4	protein-coding
19-PTNLD28-TUMOR_peak_8199	chr1	172312859	172312998	+	4.52080	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-76900	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_8916	chr1	186633166	186633338	+	4.52080	NA	Intergenic	AluSg4|SINE|Alu	16307	NM_000963	5743	Hs.196384	NM_000963	HPRD:02599	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	protein-coding
19-PTNLD28-TUMOR_peak_41004	chr17	31451970	31452101	+	4.52080	NA	intron (NM_001094, intron 1 of 9)	MER1A|DNA|hAT-Charlie	133153	NM_173847	124912	Hs.434112	NM_173847	HPRD:15420	SPACA3	1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
19-PTNLD28-TUMOR_peak_75763	chr4	77457397	77457485	+	4.52080	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	-37280	NR_039654	100616299		NR_039654		MIR4450	-	microRNA 4450	ncRNA
19-PTNLD28-TUMOR_peak_102536	chr9	26747778	26747866	+	4.52080	NA	Intergenic	Intergenic	145004	NM_024828	79886	Hs.178357	NM_024828	HPRD:12981	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_59715	chr20	8342292	8342380	+	4.52080	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	229424	NM_015192	23236	Hs.431173	NM_015192	HPRD:06177	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B	phospholipase C, beta 1 (phosphoinositide-specific)	protein-coding
19-PTNLD28-TUMOR_peak_62061	chr20	52322677	52322765	+	4.52080	NA	Intergenic	Intergenic	-123085	NM_006526	7764	Hs.155040	NM_006526	HPRD:04272	ZNF217	ZABC1	zinc finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_80473	chr5	69381015	69381109	+	4.52080	NA	Intergenic	MER82|DNA|TcMar-Tigger	35712	NM_022874	6606	Hs.535788	NM_000344	HPRD:02646	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
19-PTNLD28-TUMOR_peak_50419	chr19	56152034	56152146	+	4.51947	NA	promoter-TSS (NM_207115)	promoter-TSS (NM_207115)	-302	NM_207115	51157	Hs.631551	NM_016202	HPRD:18353	ZNF580	-	zinc finger protein 580	protein-coding
19-PTNLD28-TUMOR_peak_87746	chr6	45576947	45577035	+	4.51457	NA	Intergenic	Intergenic	186677	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_60971	chr20	37262414	37262539	+	4.51446	NA	intron (NM_001164431, intron 5 of 14)	intron (NM_001164431, intron 5 of 14)	31899	NM_001164431	343578	Hs.451997	NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
19-PTNLD28-TUMOR_peak_77255	chr4	141073212	141073319	+	4.51205	NA	intron (NM_018717, intron 1 of 5)	CpG	1968	NM_018717	55534	Hs.586165	NM_018717	HPRD:10066	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_104894	chr9	100685243	100685331	+	4.51112	NA	promoter-TSS (NM_016481)	promoter-TSS (NM_016481)	-435	NM_016481	51531	Hs.9196	NM_016481	HPRD:12945	C9orf156	HSPC219|NAP1	chromosome 9 open reading frame 156	protein-coding
19-PTNLD28-TUMOR_peak_73885	chr4	2073729	2073901	+	4.51112	NA	3' UTR (NM_181808, exon 24 of 24)	3' UTR (NM_181808, exon 24 of 24)	12576	NM_178557	339983	Hs.318529	NM_178557	HPRD:08224	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8-like (GCN5-related, putative)	protein-coding
19-PTNLD28-TUMOR_peak_1839	chr1	28559485	28559583	+	4.51112	NA	promoter-TSS (NM_014280)	promoter-TSS (NM_014280)	8	NM_014280	22826	Hs.433540	NM_014280	HPRD:13236	DNAJC8	HSPC331|SPF31	DnaJ (Hsp40) homolog, subfamily C, member 8	protein-coding
19-PTNLD28-TUMOR_peak_88033	chr6	53516100	53516188	+	4.51112	NA	3' UTR (NM_001003760, exon 3 of 3)	3' UTR (NM_001003760, exon 3 of 3)	14362	NM_001003760	401265	Hs.131064	NM_001003760	HPRD:13923	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch-like family member 31	protein-coding
19-PTNLD28-TUMOR_peak_66054	chr22	47677024	47677112	+	4.51080	NA	Intergenic	Intergenic	205792	NR_109967	101927722	Hs.589927	NR_109967	ENSG00000218357	LOC101927722	-	uncharacterized LOC101927722	ncRNA
19-PTNLD28-TUMOR_peak_39989	chr17	7452743	7452886	+	4.51080	NA	exon (NM_172089, exon 2 of 11)	exon (NM_172089, exon 2 of 11)	439	NM_003809	8742	Hs.54673	NM_003809	HPRD:04074	TNFSF12	APO3L|DR3LG|TWEAK	tumor necrosis factor (ligand) superfamily, member 12	protein-coding
19-PTNLD28-TUMOR_peak_32205	chr14	103744953	103745041	+	4.51080	NA	Intergenic	AluY|SINE|Alu	-55342	NM_001969	1983	Hs.433702	NM_001969	HPRD:03417	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
19-PTNLD28-TUMOR_peak_73642	chr3	197097370	197097510	+	4.51080	NA	Intergenic	Intergenic	-71297	NM_001290983	1739	Hs.292549	NM_004087	HPRD:03007	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs, large homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_59364	chr20	271043	271158	+	4.51080	NA	intron (NM_153269, intron 1 of 10)	CpG	319	NM_153269	140680	Hs.348112	NM_080571	HPRD:12790	C20orf96	dJ1103G7.2	chromosome 20 open reading frame 96	protein-coding
19-PTNLD28-TUMOR_peak_48741	chr19	36450072	36450160	+	4.51080	NA	Intergenic	CpG	22094	NM_024509	79414	Hs.143792	NM_024509	HPRD:14309	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_69492	chr3	101914485	101914658	+	4.51080	NA	Intergenic	Intergenic	-239288	NM_175056	131368	Hs.352213	NM_175056	HPRD:14048	ZPLD1	-	zona pellucida-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_90537	chr6	167764723	167764827	+	4.51080	NA	Intergenic	CpG	26201	NM_031949	83887	Hs.520554	NM_031949		TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase-like family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_74367	chr4	8596051	8596318	+	4.50707	NA	intron (NM_003652, intron 1 of 9)	MIRb|SINE|MIR	1797	NM_001014448	8532	Hs.61995	NM_003652	HPRD:04376	CPZ	-	carboxypeptidase Z	protein-coding
19-PTNLD28-TUMOR_peak_24465	chr12	53645942	53646225	+	4.50454	NA	intron (NM_032889, intron 1 of 1)	intron (NM_032889, intron 1 of 1)	207	NM_032889	84975	Hs.654660	NM_032889	HPRD:14416	MFSD5	hsMOT2	major facilitator superfamily domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_62278	chr20	56039490	56039583	+	4.50454	NA	Intergenic	Intergenic	60387	NM_001269041	140690	Hs.131543	NM_080618	HPRD:09512	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor (zinc finger protein)-like	protein-coding
19-PTNLD28-TUMOR_peak_9551	chr1	204607565	204607659	+	4.50454	NA	intron (NM_201630, intron 1 of 1)	AluSg7|SINE|Alu	46869	NM_006338	10446	Hs.26312	NM_006338	HPRD:16109	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
19-PTNLD28-TUMOR_peak_35109	chr15	89192195	89192293	+	4.50346	NA	intron (NM_002201, intron 2 of 3)	intron (NM_002201, intron 2 of 3)	10205	NM_002201	3669	Hs.459265	NM_002201		ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20kDa	protein-coding
19-PTNLD28-TUMOR_peak_20239	chr11	77905750	77905838	+	4.50346	NA	intron (NM_020798, intron 1 of 10)	intron (NM_020798, intron 1 of 10)	5936	NM_020798	57558	Hs.531249	NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
19-PTNLD28-TUMOR_peak_93472	chr7	75911995	75912138	+	4.50346	NA	exon (NM_001110199, exon 13 of 15)	exon (NM_001110199, exon 13 of 15)	-19809	NM_001540	3315	Hs.520973	NM_001540	HPRD:09076	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock 27kDa protein 1	protein-coding
19-PTNLD28-TUMOR_peak_61600	chr20	47025837	47025965	+	4.50346	NA	Intergenic	Intergenic	37247	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
19-PTNLD28-TUMOR_peak_39479	chr16	89690198	89690475	+	4.50346	NA	intron (NM_004413, intron 1 of 10)	intron (NM_004413, intron 1 of 10)	3336	NM_004413	1800	Hs.109	NM_004413	HPRD:01563	DPEP1	MBD1|MDP|RDP	dipeptidase 1 (renal)	protein-coding
19-PTNLD28-TUMOR_peak_49052	chr19	40696893	40696981	+	4.50346	NA	promoter-TSS (NM_002446)	promoter-TSS (NM_002446)	-714	NM_002446	4294	Hs.466743	NM_002446	HPRD:02533	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_39106	chr16	84681645	84682030	+	4.50042	NA	promoter-TSS (NM_024731)	promoter-TSS (NM_024731)	-294	NM_024731	79786	Hs.222731	NM_024731	HPRD:12675	KLHL36	C16orf44	kelch-like family member 36	protein-coding
19-PTNLD28-TUMOR_peak_107323	chrUn_gl000243	25853	26043	+	4.49931	NA	NA	TAR1|Satellite|telo	NA	NA								
19-PTNLD28-TUMOR_peak_47057	chr19	8432293	8432588	+	4.49909	NA	intron (NM_001039667, intron 3 of 5)	intron (NM_001039667, intron 3 of 5)	3429	NM_001039667	51129	Hs.9613	NM_016109	HPRD:16173	ANGPTL4	ANGPTL2|ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_15788	chr10	116395104	116395192	+	4.49909	NA	intron (NM_001003407, intron 1 of 21)	intron (NM_001003407, intron 1 of 21)	22910	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_92710	chr7	56438293	56438416	+	4.49532	NA	Intergenic	Intergenic	77714	NR_029420	650226	Hs.448401	NR_029420		LOC650226	-	ankyrin repeat domain 26 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_38076	chr16	57829494	57829582	+	4.49428	NA	intron (NM_001130100, intron 2 of 19)	intron (NM_001130100, intron 2 of 19)	2391	NM_001130099	3801	Hs.23131	NM_005550	HPRD:05171	KIFC3	-	kinesin family member C3	protein-coding
19-PTNLD28-TUMOR_peak_30865	chr14	67708657	67708762	+	4.49428	NA	intron (NM_001256550, intron 1 of 14)	intron (NM_001256550, intron 1 of 14)	697	NM_022474	64398	Hs.652312	NM_022474	HPRD:09508	MPP5	PALS1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding
19-PTNLD28-TUMOR_peak_101220	chr8	135724640	135724730	+	4.49428	NA	intron (NM_001289394, intron 1 of 16)	MIR|SINE|MIR	607	NM_020863	57623	Hs.446172	NM_020863	HPRD:11712	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT hook domain containing	protein-coding
19-PTNLD28-TUMOR_peak_729	chr1	10960067	10960155	+	4.49183	NA	Intergenic	MIRc|SINE|MIR	81983	NM_001170754	148345	Hs.127026	NM_173507	HPRD:08780	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
19-PTNLD28-TUMOR_peak_86330	chr6	28601734	28601852	+	4.48911	NA	Intergenic	Intergenic	-46681	NM_052923	114821	Hs.176980	NM_052923	HPRD:11720	ZBED9	Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	zinc finger, BED-type containing 9	protein-coding
19-PTNLD28-TUMOR_peak_57805	chr2	202077814	202077909	+	4.48911	NA	intron (NM_001206542, intron 7 of 7)	intron (NM_001206542, intron 7 of 7)	-20305	NM_033355	841	Hs.599762	NM_001228	HPRD:03459	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_24386	chr12	53084977	53085112	+	4.48911	NA	exon (NM_175078, exon 9 of 9)	exon (NM_175078, exon 9 of 9)	-10853	NM_006121	3848	Hs.80828	NM_006121	HPRD:00763	KRT1	CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
19-PTNLD28-TUMOR_peak_27308	chr12	133412664	133412782	+	4.48911	NA	Intergenic	CpG	-7297	NM_001172557	2802	Hs.507333	NM_005895	HPRD:03990	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
19-PTNLD28-TUMOR_peak_39135	chr16	85019204	85019292	+	4.48911	NA	intron (NM_017740, intron 3 of 7)	L1MC5|LINE|L1	25893	NM_017740	55625	Hs.461610	NM_017740	HPRD:15722	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger, DHHC-type containing 7	protein-coding
19-PTNLD28-TUMOR_peak_25722	chr12	97379319	97379417	+	4.48911	NA	Intergenic	Intergenic	78124	NM_001135175	121441	Hs.270084	NM_152905	HPRD:02655	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_22227	chr11	130934346	130934666	+	4.48911	NA	Intergenic	Intergenic	-148124	NM_001301089	399979	Hs.444024	NM_014758	HPRD:18621	SNX19	CHET8	sorting nexin 19	protein-coding
19-PTNLD28-TUMOR_peak_68919	chr3	69343660	69343748	+	4.48821	NA	intron (NM_015123, intron 4 of 22)	intron (NM_015123, intron 4 of 22)	91751	NM_015123	23150	Hs.371681	NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
19-PTNLD28-TUMOR_peak_46559	chr19	1171941	1172114	+	4.48821	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	2255	NM_014963	22904	Hs.408708	NM_014963	HPRD:17203	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_4969	chr1	94313388	94313476	+	4.48731	NA	promoter-TSS (NM_001261408)	promoter-TSS (NM_001261408)	-726	NM_001261408	8412	Hs.36958	NM_003567	HPRD:05268	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding
19-PTNLD28-TUMOR_peak_29339	chr14	21101203	21101374	+	4.48574	NA	Intergenic	Intergenic	8562	NM_001001968	341799	Hs.513132	NM_001001968	HPRD:17779	OR6S1	OR14-37|OR6S1Q	olfactory receptor, family 6, subfamily S, member 1	protein-coding
19-PTNLD28-TUMOR_peak_96832	chr8	155382	155477	+	4.48574	NA	Intergenic	(CCCTAA)n|Simple_repeat|Simple_repeat	-26708	NM_001287255	169270	Hs.591388	NM_173539	HPRD:11731	ZNF596	-	zinc finger protein 596	protein-coding
19-PTNLD28-TUMOR_peak_42244	chr17	48520660	48520814	+	4.48574	NA	intron (NM_001288968, intron 2 of 16)	Arthur1C|DNA|hAT-Tip100	17218	NM_001288969	80221	Hs.288959	NM_025149	HPRD:13380	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_68255	chr3	50704264	50704543	+	4.48574	NA	Intergenic	Intergenic	-8108	NR_039950	100616138		NR_039950	miRBase:MI0017434	MIR4787	-	microRNA 4787	ncRNA
19-PTNLD28-TUMOR_peak_44809	chr18	19833225	19833374	+	4.48574	NA	Intergenic	Intergenic	83901	NM_005257	2627	Hs.514746	NM_005257	HPRD:09043	GATA6	-	GATA binding protein 6	protein-coding
19-PTNLD28-TUMOR_peak_21441	chr11	117387061	117387240	+	4.48574	NA	intron (NM_020693, intron 8 of 32)	intron (NM_020693, intron 8 of 32)	188579	NM_014956	22897	Hs.504009	NM_014956	HPRD:10854	CEP164	NPHP15	centrosomal protein 164kDa	protein-coding
19-PTNLD28-TUMOR_peak_24023	chr12	48167371	48167478	+	4.48574	NA	intron (NM_017842, intron 1 of 2)	CpG	457	NM_017842	55652	Hs.438867	NM_017842	HPRD:07916	SLC48A1	HRG-1|HRG1|hHRG-1	solute carrier family 48 (heme transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_30542	chr14	58633212	58633339	+	4.48574	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-14428	NM_001001872	145407	Hs.535420	NM_001001872		C14orf37	c14_5376	chromosome 14 open reading frame 37	protein-coding
19-PTNLD28-TUMOR_peak_70561	chr3	127391353	127391464	+	4.48371	NA	promoter-TSS (NM_172027)	promoter-TSS (NM_172027)	-373	NM_032548	80325	Hs.107812	NM_032548	HPRD:10513	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_107274	chrUn_gl000228	54762	54984	+	4.48371	NA	Intergenic	Intergenic	-22647	NM_001286820	448831	Hs.626907	NM_001005217	HPRD:16418	FRG2	FRG2A	FSHD region gene 2	protein-coding
19-PTNLD28-TUMOR_peak_65906	chr22	45559096	45559224	+	4.48371	NA	promoter-TSS (NM_007172)	promoter-TSS (NM_007172)	502	NR_038956	100506714	Hs.189902	NR_038956		NUP50-AS1	-	NUP50 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_11514	chr1	247275474	247275619	+	4.48371	NA	5' UTR (NM_207401, exon 1 of 1)	5' UTR (NM_207401, exon 1 of 1)	173	NM_207401	388759	Hs.456511	NM_207401	HPRD:13511	C1orf229	-	chromosome 1 open reading frame 229	protein-coding
19-PTNLD28-TUMOR_peak_1075	chr1	16542827	16543001	+	4.48371	NA	Intergenic	Intergenic	-3810	NM_153213	128272	Hs.591532	NM_153213	HPRD:10659	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding
19-PTNLD28-TUMOR_peak_43096	chr17	66018233	66018393	+	4.48344	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-13535	NM_002266	3838	Hs.594238	NM_002266	HPRD:02818	KPNA2	IPOA1|QIP2|RCH1|SRP1alpha	karyopherin alpha 2 (RAG cohort 1, importin alpha 1)	protein-coding
19-PTNLD28-TUMOR_peak_92962	chr7	66460134	66460295	+	4.47858	NA	intron (NM_016038, intron 1 of 4)	CpG	374	NM_016038	51119	Hs.110445	NM_016038	HPRD:07393	SBDS	SDS|SWDS	Shwachman-Bodian-Diamond syndrome	protein-coding
19-PTNLD28-TUMOR_peak_50542	chr19	58516025	58516156	+	4.47858	NA	intron (NR_036508, intron 3 of 3)	L2b|LINE|L2	-1376	NM_025027	80095	Hs.654967	NM_025027	HPRD:15871	ZNF606	ZNF328	zinc finger protein 606	protein-coding
19-PTNLD28-TUMOR_peak_54564	chr2	102175492	102175620	+	4.47639	NA	Intergenic	Intergenic	-84391	NM_001145664	731220	Hs.662488	NM_207403	ENSG00000196460	RFX8	-	RFX family member 8, lacking RFX DNA binding domain	protein-coding
19-PTNLD28-TUMOR_peak_104957	chr9	101762877	101762965	+	4.47639	NA	intron (NM_001855, intron 6 of 41)	MIR|SINE|MIR	56926	NM_001855	1306	Hs.409034	NM_001855	HPRD:00380	COL15A1	-	collagen, type XV, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_83133	chr5	149111227	149111385	+	4.47639	NA	intron (NM_133263, intron 1 of 11)	CpG	1491	NM_133263	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_94944	chr7	117512620	117512934	+	4.47639	NA	intron (NM_033427, intron 1 of 22)	intron (NM_033427, intron 1 of 22)	784	NM_033427	83992	Hs.592285	NM_033427	HPRD:09890	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_11437	chr1	245266356	245266571	+	4.47639	NA	intron (NM_001143943, intron 6 of 6)	intron (NM_001143943, intron 6 of 6)	-51824	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_40961	chr17	30411163	30411288	+	4.47639	NA	Intergenic	Intergenic	43870	NR_033412	6458	Hs.672460	NR_033412		SH3GL1P1	CNSA-P1|SH3GLP1	SH3-domain GRB2-like 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_70607	chr3	127936613	127936804	+	4.47292	NA	intron (NM_021937, intron 1 of 6)	MIRb|SINE|MIR	64395	NM_021937	60678	Hs.477498	NM_021937	HPRD:07409	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding
19-PTNLD28-TUMOR_peak_62355	chr20	57053538	57053757	+	4.47292	NA	intron (NM_153360, intron 1 of 3)	MIR|SINE|MIR	36302	NM_153360	164284	Hs.119286	NM_153360	HPRD:08294	APCDD1L	-	adenomatosis polyposis coli down-regulated 1-like	protein-coding
19-PTNLD28-TUMOR_peak_54543	chr2	101855998	101856086	+	4.47292	NA	Intergenic	HERVK11D-int|LTR|ERVK	-13303	NM_017546	55571	Hs.744080	NM_017546	HPRD:12812	CNOT11	C2orf29	CCR4-NOT transcription complex, subunit 11	protein-coding
19-PTNLD28-TUMOR_peak_9879	chr1	209606738	209606920	+	4.47292	NA	TTS (NM_001104548)	TTS (NM_001104548)	1351	NR_029622	406988		NR_029622		MIR205	MIRN205	microRNA 205	ncRNA
19-PTNLD28-TUMOR_peak_67869	chr3	45617057	45617147	+	4.47292	NA	Intergenic	Intergenic	-19221	NM_014240	8994	Hs.193370	NM_014240		LIMD1	-	LIM domains containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33391	chr15	44842628	44842731	+	4.47292	NA	intron (NM_001284336, intron 2 of 5)	AluJr|SINE|Alu	13413	NM_003758	8669	Hs.404056	NM_003758	HPRD:04883	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3, subunit J	protein-coding
19-PTNLD28-TUMOR_peak_97949	chr8	29088948	29089066	+	4.47292	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	31603	NM_015254	23303	Hs.444767	NM_015254	HPRD:09556	KIF13B	GAKIN	kinesin family member 13B	protein-coding
19-PTNLD28-TUMOR_peak_60261	chr20	24666122	24666239	+	4.47292	NA	Intergenic	Intergenic	216345	NM_024893	79953	Hs.124638	NM_024893	HPRD:12766	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
19-PTNLD28-TUMOR_peak_79749	chr5	43718098	43718237	+	4.47292	NA	Intergenic	L1PA2|LINE|L1	-114835	NR_073113	100652772	Hs.482043	NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_24932	chr12	63144873	63145051	+	4.47292	NA	intron (NM_020700, intron 4 of 9)	Plat_L3|LINE|CR1	147496	NR_029661	406891		NR_029661	miRBase:MI0000434	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i	microRNA let-7i	ncRNA
19-PTNLD28-TUMOR_peak_85062	chr6	6190979	6191086	+	4.47292	NA	intron (NM_000129, intron 10 of 14)	L1PA3|LINE|L1	129892	NM_000129	2162	Hs.335513	NM_000129	HPRD:00604	F13A1	F13A	coagulation factor XIII, A1 polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_26430	chr12	113760215	113760378	+	4.47292	NA	intron (NM_024959, intron 2 of 15)	L1M5|LINE|L1	12629	NM_024959	80024	Hs.286194	NM_024959	HPRD:15354	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding
19-PTNLD28-TUMOR_peak_23028	chr12	10821184	10821360	+	4.47292	NA	intron (NM_018423, intron 1 of 10)	AluSq|SINE|Alu	5619	NM_018423	55359	Hs.24979	NM_018423	HPRD:15447	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_9264	chr1	201754563	201754688	+	4.47292	NA	intron (NM_020443, intron 8 of 29)	intron (NM_020443, intron 8 of 29)	13153	NR_046945	100873779		NR_046945	ENSG00000199381	RNU6-79P	RNU6-79	RNA, U6 small nuclear 79, pseudogene	snRNA
19-PTNLD28-TUMOR_peak_22320	chr11	134844959	134845148	+	4.47292	NA	Intergenic	Intergenic	538677	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	ncRNA
19-PTNLD28-TUMOR_peak_92507	chr7	49673427	49673567	+	4.47292	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-139760	NM_198570	375567	Hs.629302	NM_198570		VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_14052	chr10	71275543	71275633	+	4.47292	NA	Intergenic	Intergenic	57622	NM_020999	50674	Hs.532682	NM_020999		NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
19-PTNLD28-TUMOR_peak_63422	chr21	38083135	38083223	+	4.47292	NA	intron (NM_009586, intron 2 of 9)	intron (NM_009586, intron 2 of 9)	11188	NM_009586	6493	Hs.146186	NM_005069	HPRD:02935	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded family bHLH transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_10570	chr1	227922555	227922660	+	4.47038	NA	promoter-TSS (NM_053052)	promoter-TSS (NM_053052)	-90	NM_053052	116841	Hs.325081	NM_053052	HPRD:17148	SNAP47	C1orf142|HEL170|SNAP-47|SVAP1	synaptosomal-associated protein, 47kDa	protein-coding
19-PTNLD28-TUMOR_peak_714	chr1	10797479	10797567	+	4.46968	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	59210	NM_001079843	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_109935	chrX	153278184	153278352	+	4.46968	NA	intron (NM_001569, intron 12 of 13)	intron (NM_001569, intron 12 of 13)	7074	NM_001025242	3654	Hs.522819	NM_001569	HPRD:02235	IRAK1	IRAK|pelle	interleukin-1 receptor-associated kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_1374	chr1	22351866	22352044	+	4.46968	NA	promoter-TSS (NR_023919)	promoter-TSS (NR_023919)	-42	NR_109762	29092	Hs.279842	NR_023918	ENSG00000218510	LINC00339	HSPC157|NCRNA00339	long intergenic non-protein coding RNA 339	ncRNA
19-PTNLD28-TUMOR_peak_58908	chr2	234117203	234117327	+	4.46968	NA	TTS (NM_005541)	TTS (NM_005541)	-42952	NM_001190266	55054	Hs.529322	NM_017974	HPRD:16498	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_46605	chr19	1807880	1808016	+	4.46968	NA	intron (NR_047593, intron 5 of 28)	intron (NR_047593, intron 5 of 28)	4288	NM_001178002	148229	Hs.306212	NM_138813	HPRD:05793	ATP8B3	ATPIK	ATPase, aminophospholipid transporter, class I, type 8B, member 3	protein-coding
19-PTNLD28-TUMOR_peak_7755	chr1	162188823	162188931	+	4.46968	NA	intron (NM_001164757, intron 2 of 9)	MIRb|SINE|MIR	61980	NR_039798	100616386		NR_039798		MIR4654	-	microRNA 4654	ncRNA
19-PTNLD28-TUMOR_peak_105860	chr9	124044952	124045043	+	4.46453	NA	non-coding (NR_103560, exon 1 of 1)	non-coding (NR_103560, exon 1 of 1)	2811	NR_103560	57000	Hs.522373	NM_020250	ENSG00000235865	GSN-AS1	C9orf31|MOST2	GSN antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_48853	chr19	38494195	38494353	+	4.46290	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	96413	NM_015073	23094	Hs.655502	NM_015073	HPRD:18755	SIPA1L3	SPAL3	signal-induced proliferation-associated 1 like 3	protein-coding
19-PTNLD28-TUMOR_peak_88398	chr6	76156192	76156394	+	4.46244	NA	intron (NM_001300866, intron 1 of 6)	intron (NM_001300866, intron 1 of 6)	47252	NR_110608	27145	Hs.696158	NM_015687	HPRD:09533	FILIP1	FILIP	filamin A interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_58749	chr2	230578480	230578620	+	4.46244	NA	intron (NM_139072, intron 1 of 12)	CpG	736	NM_139072	92737	Hs.234074	NM_139072	HPRD:09531	DNER	UNQ26|bet	delta/notch-like EGF repeat containing	protein-coding
19-PTNLD28-TUMOR_peak_62315	chr20	56285573	56285701	+	4.46043	NA	promoter-TSS (NM_199170)	promoter-TSS (NM_199170)	33	NM_199169	56937	Hs.517155	NM_020182	HPRD:09415	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
19-PTNLD28-TUMOR_peak_50902	chr2	7976265	7976368	+	4.45799	NA	Intergenic	Intergenic	63470	NR_110256	101929551	Hs.116006	NR_110256		LOC101929551	-	uncharacterized LOC101929551	ncRNA
19-PTNLD28-TUMOR_peak_86740	chr6	32551960	32552052	+	4.45799	NA	exon (NM_002124, exon 2 of 6)	exon (NM_002124, exon 2 of 6)	5607	NM_001243965	3123	Hs.534322	NM_002124	HPRD:08349	HLA-DRB1	DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
19-PTNLD28-TUMOR_peak_85307	chr6	11009735	11009918	+	4.45799	NA	intron (NM_017770, intron 2 of 7)	L2a|LINE|L2	-34165	NR_038964	100506409	Hs.43818	NR_038962		ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83227	chr5	150128318	150128427	+	4.45799	NA	intron (NM_001135643, intron 3 of 13)	L1PA3|LINE|L1	9710	NM_001135644	51164	Hs.675564	NM_016221	HPRD:13126	DCTN4	DYN4|P62	dynactin 4 (p62)	protein-coding
19-PTNLD28-TUMOR_peak_50177	chr19	53507648	53507736	+	4.45799	NA	Intergenic	Intergenic	-9652	NM_152473	147664	Hs.44329	NM_152473		ERVV-1	ENVV1|ERVV-2|HERV-V1	endogenous retrovirus group V, member 1	protein-coding
19-PTNLD28-TUMOR_peak_11476	chr1	246001539	246001627	+	4.45799	NA	intron (NM_022743, intron 10 of 11)	intron (NM_022743, intron 10 of 11)	579131	NM_022743	64754	Hs.567571	NM_022743	HPRD:12297	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_44187	chr18	35892	36062	+	4.45799	NA	Intergenic	L1PA3|LINE|L1	23902	NR_110795	102723376	Hs.606852	NR_110795		LOC102723376	-	uncharacterized LOC102723376	ncRNA
19-PTNLD28-TUMOR_peak_35766	chr16	2077788	2077895	+	4.45716	NA	intron (NM_004785, intron 1 of 6)	intron (NM_004785, intron 1 of 6)	972	NM_004785	9351	Hs.440896	NM_004785	HPRD:05946	SLC9A3R2	E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1	solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2	protein-coding
19-PTNLD28-TUMOR_peak_52639	chr2	47304463	47304568	+	4.45716	NA	Intergenic	Intergenic	78002	NM_173649	285051	Hs.531575	NM_173649	HPRD:08273	C2orf61	-	chromosome 2 open reading frame 61	protein-coding
19-PTNLD28-TUMOR_peak_30578	chr14	59655793	59655909	+	4.45706	NA	intron (NM_001270520, intron 1 of 24)	CpG	470	NM_001270520	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_46304	chr18	74203736	74203845	+	4.45222	NA	intron (NM_014643, intron 1 of 7)	CpG	3356	NM_014643	9658	Hs.436973	NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
19-PTNLD28-TUMOR_peak_49783	chr19	49465649	49465754	+	4.45181	NA	TTS (NM_001291431)	TTS (NM_001291431)	-2865	NM_000146	2512	Hs.433670	NM_000146	HPRD:00616	FTL	LFTD|NBIA3	ferritin, light polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_99068	chr8	67838611	67838771	+	4.45102	NA	promoter-TSS (NR_002599)	promoter-TSS (NR_002599)	-914	NR_002599	641638	Hs.372680	NR_002599	ENSG00000245910	SNHG6	HBII-276HG|NCRNA00058|U87HG	small nucleolar RNA host gene 6 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_76903	chr4	123587727	123587950	+	4.44988	NA	intron (NR_104126, intron 10 of 10)	MIRc|SINE|MIR	-45626	NM_021803	59067	Hs.567559	NM_021803	HPRD:05650	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
19-PTNLD28-TUMOR_peak_2204	chr1	33520897	33521042	+	4.44988	NA	Intergenic	Intergenic	-18457	NR_037592	204	Hs.470907	NM_001625	HPRD:00047	AK2	ADK2|AK 2	adenylate kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_31773	chr14	93454268	93454356	+	4.44988	NA	intron (NM_001142593, intron 5 of 10)	intron (NM_001142593, intron 5 of 10)	64867	NM_001275	1113	Hs.150793	NM_001275	HPRD:07170	CHGA	CGA	chromogranin A (parathyroid secretory protein 1)	protein-coding
19-PTNLD28-TUMOR_peak_37444	chr16	32944105	32944255	+	4.44988	NA	Intergenic	Intergenic	-47717	NR_003083	386757	Hs.433146	NM_198857	HPRD:13479	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_51877	chr2	29256678	29256836	+	4.44988	NA	intron (NM_199280, intron 16 of 19)	intron (NM_199280, intron 16 of 19)	40370	NM_001029883	388939	Hs.354243	NM_001029883	ENSG00000179270	C2orf71	RP54	chromosome 2 open reading frame 71	protein-coding
19-PTNLD28-TUMOR_peak_94012	chr7	94732729	94732820	+	4.44988	NA	intron (NM_017650, intron 2 of 15)	AluY|SINE|Alu	193564	NM_001166161	55607	Hs.21816	NM_017650	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	protein phosphatase 1, regulatory subunit 9A	protein-coding
19-PTNLD28-TUMOR_peak_57588	chr2	196385825	196385922	+	4.44988	NA	Intergenic	LTR35|LTR|ERV1	-135659	NM_001127257	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_97867	chr8	27803630	27803854	+	4.44988	NA	intron (NM_173833, intron 3 of 8)	intron (NM_173833, intron 3 of 8)	46627	NM_173833	286133	Hs.591833	NM_173833	HPRD:11356	SCARA5	NET33|Tesr	scavenger receptor class A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_109572	chrX	134970413	134970524	+	4.44988	NA	intron (NM_001291543, intron 1 of 4).4	intron (NM_001291543, intron 1 of 4).4	575	NM_001291543	101060211	Hs.535080	NM_001291543		LOC101060211	-	cancer/testis antigen family 45 member A5-like	protein-coding
19-PTNLD28-TUMOR_peak_84419	chr5	177956100	177956267	+	4.44988	NA	intron (NM_173465, intron 2 of 28)	MLT1H2|LTR|ERVL-MaLR	61373	NM_173465	91522	Hs.660026	NM_173465	HPRD:16733	COL23A1	-	collagen, type XXIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_50093	chr19	52288185	52288297	+	4.44988	NA	Intergenic	LTR8|LTR|ERV1	-10170	NM_002030	2359	Hs.445466	NM_002030	HPRD:00648	FPR3	FML2_HUMAN|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I	formyl peptide receptor 3	protein-coding
19-PTNLD28-TUMOR_peak_49833	chr19	49903325	49903443	+	4.44988	NA	intron (NM_144688, intron 9 of 19)	AluJb|SINE|Alu	11909	NM_144688	147872	Hs.662085	NM_144688	HPRD:08134	CCDC155	KASH5	coiled-coil domain containing 155	protein-coding
19-PTNLD28-TUMOR_peak_21167	chr11	112065948	112066178	+	4.44988	NA	intron (NM_001037290, intron 5 of 11)	AluSc|SINE|Alu	18974	NM_001256397	83875	Hs.728325	NM_031938	HPRD:12522	BCO2	B-DIOX-II|BCDO2	beta-carotene oxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_93835	chr7	88387795	88387883	+	4.44988	NA	promoter-TSS (NM_181646)	promoter-TSS (NM_181646)	-914	NM_181646	219578	Hs.684410	NM_181646	HPRD:08721	ZNF804B	-	zinc finger protein 804B	protein-coding
19-PTNLD28-TUMOR_peak_7144	chr1	155017916	155018014	+	4.44340	NA	non-coding (NR_040772, exon 4 of 4)	non-coding (NR_040772, exon 4 of 4)	5676	NR_040772	100505666	Hs.657533	NR_040772		LOC100505666	-	uncharacterized LOC100505666	ncRNA
19-PTNLD28-TUMOR_peak_50263	chr19	54599935	54600037	+	4.44340	NA	intron (NM_001282350, intron 3 of 3)	CT-rich|Low_complexity|Low_complexity	6008	NM_001282349	126014	Hs.347655	NM_130771	HPRD:06035	OSCAR	PIGR3|PIgR-3	osteoclast associated, immunoglobulin-like receptor	protein-coding
19-PTNLD28-TUMOR_peak_83869	chr5	170171922	170172097	+	4.44257	NA	Intergenic	AluJb|SINE|Alu	-38714	NM_001291985	2568	Hs.26225	NM_014211	HPRD:04105	GABRP	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding
19-PTNLD28-TUMOR_peak_80666	chr5	73294425	73294558	+	4.44231	NA	Intergenic	Intergenic	185148	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_89939	chr6	150067602	150067779	+	4.44231	NA	promoter-TSS (NR_104456)	promoter-TSS (NR_104456)	18	NR_104456	348995	Hs.510375	NM_024647	HPRD:12174	NUP43	bA350J20.1|p42	nucleoporin 43kDa	protein-coding
19-PTNLD28-TUMOR_peak_70331	chr3	124470055	124470148	+	4.44231	NA	Intergenic	SVA_D|Other|Other	20888	NR_033434	7372	Hs.2057	NM_000373		UMPS	OPRT	uridine monophosphate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_32370	chr14	106026260	106026495	+	4.44231	NA	Intergenic	CpG	33424	NM_025268	80757	Hs.157527	NM_025268	HPRD:14652	TMEM121	hole	transmembrane protein 121	protein-coding
19-PTNLD28-TUMOR_peak_97901	chr8	28225177	28225265	+	4.44231	NA	intron (NM_018660, intron 1 of 9)	MIR|SINE|MIR	18756	NM_018660	55893	Hs.435535	NM_018660	HPRD:11711	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
19-PTNLD28-TUMOR_peak_84914	chr6	3627763	3627854	+	4.43914	NA	Intergenic	Intergenic	124438	NM_183373	221749	Hs.484500	NM_183373	HPRD:12854	PXDC1	C6orf145	PX domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_65852	chr22	44588376	44588550	+	4.43914	NA	intron (NM_001137605, intron 8 of 13)	intron (NM_001137605, intron 8 of 13)	11693	NM_022141	64098	Hs.658995	NM_022141	HPRD:16285	PARVG	-	parvin, gamma	protein-coding
19-PTNLD28-TUMOR_peak_1001	chr1	15929768	15929870	+	4.43914	NA	Intergenic	Intergenic	-14134	NM_032341	84301	Hs.718857	NM_032341		DDI2	-	DNA-damage inducible 1 homolog 2 (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_21980	chr11	126703296	126703384	+	4.43914	NA	intron (NM_001301097, intron 1 of 15)	intron (NM_001301097, intron 1 of 15)	-107302	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_81337	chr5	99397847	99398030	+	4.43914	NA	Intergenic	Intergenic	326020	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_61373	chr20	44562850	44562973	+	4.43880	NA	promoter-TSS (NM_022104)	promoter-TSS (NM_022104)	-406	NM_022104	63935	Hs.472856	NM_022104	HPRD:12779	PCIF1	C20orf67|PPP1R121	PDX1 C-terminal inhibiting factor 1	protein-coding
19-PTNLD28-TUMOR_peak_69537	chr3	105587337	105587463	+	4.43667	NA	intron (NM_170662, intron 1 of 18)	CpG	487	NM_170662	868	Hs.430589	NM_170662	HPRD:05136	CBLB	Cbl-b|RNF56	Cbl proto-oncogene B, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_2681	chr1	40236538	40236634	+	4.43667	NA	exon (NM_022120, exon 1 of 1)	exon (NM_022120, exon 1 of 1)	434	NM_022120	64064	Hs.472491	NM_022120	HPRD:15093	OXCT2	SCOTT	3-oxoacid CoA transferase 2	protein-coding
19-PTNLD28-TUMOR_peak_4998	chr1	94702597	94702813	+	4.43667	NA	intron (NM_004815, intron 1 of 22)	CpG	602	NM_004815	9411	Hs.483238	NM_004815		ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
19-PTNLD28-TUMOR_peak_60740	chr20	34379926	34380134	+	4.43540	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	20107	NM_016436	51230	Hs.517044	NM_016436	HPRD:08514	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
19-PTNLD28-TUMOR_peak_72471	chr3	176954647	176954735	+	4.43540	NA	Intergenic	Intergenic	-39643	NM_024665	79718	Hs.715026	NM_024665	HPRD:15476	TBL1XR1	C21|DC42|IRA1|TBLR1	transducin (beta)-like 1 X-linked receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_2042	chr1	31996766	31996960	+	4.43540	NA	Intergenic	PRIMA4-int|LTR|ERV1	12827	NR_027085	284551	Hs.658659	NR_027085	ENSG00000223907	LINC01226	-	long intergenic non-protein coding RNA 1226	ncRNA
19-PTNLD28-TUMOR_peak_64736	chr22	24456904	24457036	+	4.43540	NA	intron (NM_012295, intron 12 of 36)	intron (NM_012295, intron 12 of 36)	49150	NM_001199281	23523	Hs.517478	NM_012295	HPRD:10369	CABIN1	CAIN|PPP3IN	calcineurin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_25620	chr12	94495241	94495396	+	4.43540	NA	Intergenic	Intergenic	-47181	NM_005761	10154	Hs.584845	NM_005761	HPRD:05036	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
19-PTNLD28-TUMOR_peak_4145	chr1	66634365	66634531	+	4.43540	NA	intron (NM_001037340, intron 1 of 14)	L2a|LINE|L2	-118047	NR_123718	101927139	Hs.127908	NR_123718		LOC101927139	-	uncharacterized LOC101927139	ncRNA
19-PTNLD28-TUMOR_peak_38908	chr16	80090435	80090523	+	4.43540	NA	Intergenic	Intergenic	261333	NR_104661	101928248	Hs.659802	NR_104660		LOC101928248	-	uncharacterized LOC101928248	ncRNA
19-PTNLD28-TUMOR_peak_35583	chr16	121997	122168	+	4.43263	NA	intron (NM_022450, intron 1 of 17)	CpG	547	NM_022450	64285	Hs.744992	NM_022450	HPRD:07027	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_59236	chr2	241195178	241195295	+	4.43025	NA	Intergenic	MIR3|SINE|MIR	-115163	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_103675	chr9	71737637	71737855	+	4.43025	NA	intron (NM_001170414, intron 1 of 21)	intron (NM_001170414, intron 1 of 21)	1566	NM_001170414	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_83028	chr5	146957813	146958085	+	4.42696	NA	intron (NR_038902, intron 1 of 3)	intron (NR_038902, intron 1 of 3)	18392	NR_038902	153469	Hs.184323	NR_038902		JAKMIP2-AS1	-	JAKMIP2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36756	chr16	21813286	21813375	+	4.42696	NA	intron (NR_003370, intron 8 of 11)	intron (NR_003370, intron 8 of 11)	17165	NR_003370	730092	Hs.31290	NR_003370		RRN3P1	-	RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_96176	chr7	148702997	148703097	+	4.42696	NA	exon (NM_004911, exon 8 of 10)	exon (NM_004911, exon 8 of 10)	22735	NM_004911	9601	Hs.93659	NM_004911	HPRD:06501	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A, member 4	protein-coding
19-PTNLD28-TUMOR_peak_57214	chr2	179146916	179147064	+	4.42696	NA	intron (NM_001201482, intron 1 of 23)	intron (NM_001201482, intron 1 of 23)	-37981	NM_145739	114880	Hs.318775	NM_032523	HPRD:09476	OSBPL6	ORP6	oxysterol binding protein-like 6	protein-coding
19-PTNLD28-TUMOR_peak_39117	chr16	84820042	84820313	+	4.42696	NA	Intergenic	Intergenic	-33410	NM_031476	83716	Hs.513779	NM_031476	HPRD:13186	CRISPLD2	CRISP11|LCRISP2	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_36768	chr16	22012462	22012560	+	4.42696	NA	promoter-TSS (NM_173806)	promoter-TSS (NM_173806)	-80	NM_173806	255762	Hs.98244	NM_173806	HPRD:14667	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_40278	chr17	15251428	15251631	+	4.42696	NA	Intergenic	Intergenic	-6571	NM_031898	64518	Hs.414648	NM_031898	HPRD:18173	TEKT3	-	tektin 3	protein-coding
19-PTNLD28-TUMOR_peak_7993	chr1	167657240	167657382	+	4.42696	NA	intron (NM_052862, intron 3 of 6)	intron (NM_052862, intron 3 of 6)	-33876	NM_024569	9019	Hs.493919	NM_003953	HPRD:05086	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
19-PTNLD28-TUMOR_peak_8626	chr1	181287460	181287753	+	4.42696	NA	Intergenic	CpG	82082	NR_046249	100287948	Hs.742594	NR_046249	ENSG00000179452	GM140	-	uncharacterized LOC100287948	ncRNA
19-PTNLD28-TUMOR_peak_77030	chr4	129141601	129141691	+	4.42696	NA	Intergenic	Intergenic	68338	NM_006320	10424	Hs.507910	NM_006320	HPRD:09665	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
19-PTNLD28-TUMOR_peak_3667	chr1	55243357	55243459	+	4.42696	NA	Intergenic	Intergenic	-13182	NM_152268	25973	Hs.380169	NM_152268	HPRD:13220	PARS2	MT-PRORS	prolyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
19-PTNLD28-TUMOR_peak_92869	chr7	64700099	64700524	+	4.42696	NA	intron (NR_038378, intron 9 of 9)	CpG	-138401	NM_152626	168374	Hs.9521	NM_007139	HPRD:04919	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
19-PTNLD28-TUMOR_peak_65077	chr22	30783369	30783684	+	4.42696	NA	promoter-TSS (NM_001017981)	promoter-TSS (NM_001017981)	-224	NM_001017981	200312	Hs.592194	NM_001017981	HPRD:18747	RNF215	-	ring finger protein 215	protein-coding
19-PTNLD28-TUMOR_peak_56796	chr2	167038181	167038329	+	4.42696	NA	intron (NR_110260, intron 3 of 11)	L1P4d|LINE|L1	-32613	NM_001202435	6323	Hs.22654	NM_006920	HPRD:01669	SCN1A	EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI	sodium channel, voltage-gated, type I, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_2735	chr1	40771166	40771294	+	4.42692	NA	intron (NM_001852, intron 21 of 31)	MIR3|SINE|MIR	11709	NM_001852	1298	Hs.418012	NM_001852	HPRD:00373	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen, type IX, alpha 2	protein-coding
19-PTNLD28-TUMOR_peak_79346	chr5	32312331	32312500	+	4.42656	NA	intron (NM_001294343, intron 1 of 14)	CpG	699	NM_001040446	54545	Hs.481836	NM_019061	HPRD:05933	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
19-PTNLD28-TUMOR_peak_71259	chr3	139694607	139694738	+	4.42350	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	40645	NM_022131	64084	Hs.158529	NM_022131		CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
19-PTNLD28-TUMOR_peak_51850	chr2	28877982	28878070	+	4.42350	NA	Intergenic	Intergenic	-96588	NM_206876	5500	Hs.702907	NM_002709	HPRD:11792	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1, catalytic subunit, beta isozyme	protein-coding
19-PTNLD28-TUMOR_peak_83906	chr5	171041582	171041700	+	4.42350	NA	Intergenic	Intergenic	-171235	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
19-PTNLD28-TUMOR_peak_88989	chr6	107781067	107781262	+	4.42210	NA	promoter-TSS (NM_020381)	promoter-TSS (NM_020381)	-385	NM_020381	57107	Hs.745008	NM_020381	HPRD:12879	PDSS2	C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1	prenyl (decaprenyl) diphosphate synthase, subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_84749	chr6	1709165	1709360	+	4.42210	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	98581	NM_001453	2296	Hs.348883	NM_001453	HPRD:03054	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19-PTNLD28-TUMOR_peak_46261	chr18	72265936	72266038	+	4.42210	NA	promoter-TSS (NR_024484)	promoter-TSS (NR_024484)	-916	NR_024484	400657	Hs.61508	NM_001008234	HPRD:17385	LINC00909	-	long intergenic non-protein coding RNA 909	ncRNA
19-PTNLD28-TUMOR_peak_105108	chr9	107669109	107669265	+	4.42210	NA	intron (NM_005502, intron 1 of 49)	intron (NM_005502, intron 1 of 49)	21340	NM_005502	19	Hs.659274	NM_005502	HPRD:02501	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding
19-PTNLD28-TUMOR_peak_19723	chr11	70049635	70049810	+	4.42210	NA	exon (NM_003824, exon 1 of 2)	exon (NM_003824, exon 1 of 2)	453	NM_003824	8772	Hs.86131	NM_003824	HPRD:03909	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_62246	chr20	55840783	55840985	+	4.42163	NA	exon (NM_001719, exon 1 of 7)	exon (NM_001719, exon 1 of 7)	823	NM_001719	655	Hs.473163	NM_001719	HPRD:00212	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
19-PTNLD28-TUMOR_peak_109964	chrX	153617176	153617295	+	4.42061	NA	Intergenic	Intergenic	-9336	NM_001256580	6134	Hs.534404	NM_006013	HPRD:02421	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding
19-PTNLD28-TUMOR_peak_77190	chr4	140476674	140476764	+	4.41699	NA	intron (NM_030648, intron 1 of 7)	CpG	858	NM_030648	80854	Hs.480792	NM_030648	HPRD:16226	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing (lysine methyltransferase) 7	protein-coding
19-PTNLD28-TUMOR_peak_31657	chr14	90919628	90919718	+	4.41631	NA	Intergenic	Intergenic	-1901	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
19-PTNLD28-TUMOR_peak_26503	chr12	117354024	117354112	+	4.41631	NA	intron (NM_153348, intron 1 of 10)	L1ME3A|LINE|L1	5307	NM_012174	26259	Hs.624537	NM_012174	HPRD:16427	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_100439	chr8	122651465	122651711	+	4.41631	NA	promoter-TSS (NR_002835)	promoter-TSS (NR_002835)	2	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8021	chr1	168049468	168049556	+	4.41422	NA	3' UTR (NM_001267611, exon 6 of 6)	3' UTR (NM_001267611, exon 6 of 6)	56162	NM_001267612	23432	Hs.271809	NM_007369	HPRD:17070	GPR161	RE2	G protein-coupled receptor 161	protein-coding
19-PTNLD28-TUMOR_peak_7684	chr1	161410638	161410726	+	4.41261	NA	Intergenic	CpG	-64523	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_35738	chr16	1823100	1823213	+	4.41145	NA	promoter-TSS (NM_023936)	promoter-TSS (NM_023936)	-16	NM_023936	65993	Hs.720388	NM_023936	HPRD:17599	MRPS34	MRP-S12|MRP-S34|MRPS12	mitochondrial ribosomal protein S34	protein-coding
19-PTNLD28-TUMOR_peak_47826	chr19	16573706	16573800	+	4.41002	NA	intron (NM_001258374, intron 1 of 23)	intron (NM_001258374, intron 1 of 23)	9070	NM_001258374	58513	Hs.654639	NM_021235	HPRD:09445	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
19-PTNLD28-TUMOR_peak_40466	chr17	18343066	18343169	+	4.41002	NA	promoter-TSS (NR_073414)	promoter-TSS (NR_073414)	-105	NR_073414	729252	Hs.585811	NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_99409	chr8	86775947	86776101	+	4.40994	NA	non-coding (NR_003594, exon 1 of 1).6	non-coding (NR_003594, exon 1 of 1).6	104	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_39494	chr16	89788561	89788714	+	4.40648	NA	intron (NR_110129, intron 1 of 10)	CpG	685	NM_001113525	92822	Hs.290154	NM_152287	HPRD:12235	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
19-PTNLD28-TUMOR_peak_51765	chr2	27851275	27851395	+	4.40585	NA	promoter-TSS (NM_001145049)	promoter-TSS (NM_001145049)	-180	NM_001145047	11321	Hs.18259	NM_007266	HPRD:10308	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
19-PTNLD28-TUMOR_peak_16761	chr11	3580888	3580988	+	4.40122	NA	Intergenic	Intergenic	-66752	NR_002720	7221	Hs.131910	NR_002720	ENSG00000182048	TRPC2	-	transient receptor potential cation channel, subfamily C, member 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_30073	chr14	45169994	45170111	+	4.40122	NA	Intergenic	L2|LINE|L2	-193553	NM_032135	84075	Hs.307086	NM_032135	HPRD:12638	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
19-PTNLD28-TUMOR_peak_41637	chr17	41623436	41623567	+	4.40122	NA	promoter-TSS (NM_001986)	promoter-TSS (NM_001986)	-196	NM_001261438	2118	Hs.434059	NM_001986	HPRD:02833	ETV4	E1A-F|E1AF|PEA3|PEAS3	ets variant 4	protein-coding
19-PTNLD28-TUMOR_peak_48975	chr19	39612800	39612911	+	4.40122	NA	Intergenic	Intergenic	-3565	NM_001014834	10298	Hs.20447	NM_005884	HPRD:05675	PAK4	-	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_3	chr1	13417	13591	+	4.40023	NA	TTS (NR_024540)	TTS (NR_024540)	1630	NR_046018	100287102	Hs.618434	NR_046018		DDX11L1	-	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1	pseudo
19-PTNLD28-TUMOR_peak_26743	chr12	121838750	121838879	+	4.39966	NA	intron (NM_001256858, intron 1 of 4)	intron (NM_001256858, intron 1 of 4)	893	NM_194271	80196	Hs.292804	NM_025126	HPRD:10509	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_2094	chr1	32410371	32410618	+	4.39966	NA	Intergenic	CpG	-6506	NM_080391	8073	Hs.470477	NM_003479	HPRD:03348	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
19-PTNLD28-TUMOR_peak_28274	chr13	51860606	51860753	+	4.39811	NA	Intergenic	Intergenic	-54489	NM_001101320	647174	Hs.685891	NM_001101320	ENSG00000253309	SERPINE3	-	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3	protein-coding
19-PTNLD28-TUMOR_peak_100163	chr8	116231294	116231384	+	4.39811	NA	Intergenic	MIRc|SINE|MIR	448900	NM_001282902	7227	Hs.657018	NM_014112	HPRD:05091	TRPS1	GC79|LGCR	trichorhinophalangeal syndrome I	protein-coding
19-PTNLD28-TUMOR_peak_62034	chr20	52089231	52089387	+	4.39811	NA	intron (NM_173485, intron 2 of 2)	L1PA2|LINE|L1	-80000	NR_110051	101927770		NR_110051	ENSG00000197670	LOC101927770	-	uncharacterized LOC101927770	ncRNA
19-PTNLD28-TUMOR_peak_59520	chr20	2789883	2790009	+	4.39811	NA	Intergenic	LTR14C|LTR|ERVK	-5687	NM_001256538	128653	Hs.352187	NM_080739	HPRD:12748	C20orf141	dJ860F19.4	chromosome 20 open reading frame 141	protein-coding
19-PTNLD28-TUMOR_peak_9343	chr1	202508080	202508207	+	4.39811	NA	intron (NM_002481, intron 18 of 23)	intron (NM_002481, intron 18 of 23)	-1099	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_87739	chr6	45475047	45475176	+	4.39811	NA	intron (NM_001024630, intron 6 of 8)	intron (NM_001024630, intron 6 of 8)	84797	NM_001278478	860	Hs.535845	NM_004348	HPRD:02566	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt-related transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_80422	chr5	68250417	68250632	+	4.39811	NA	Intergenic	MIRc|SINE|MIR	-139252	NM_001251969	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_15891	chr10	119876651	119876756	+	4.39811	NA	intron (NR_026940, intron 3 of 3)	UCON10|Unknown|Unknown	70371	NR_026939	255082	Hs.89387	NM_178816	HPRD:12266	CASC2	C10orf5	cancer susceptibility candidate 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_81672	chr5	115152096	115152276	+	4.39811	NA	5' UTR (NM_001801, exon 1 of 5)	5' UTR (NM_001801, exon 1 of 5)	219	NM_001801	1036	Hs.442378	NM_001801	HPRD:06806	CDO1	-	cysteine dioxygenase type 1	protein-coding
19-PTNLD28-TUMOR_peak_107670	chrX	16911062	16911163	+	4.39811	NA	Intergenic	LTR50|LTR|ERVL	-22578	NM_002893	5931	Hs.495755	NM_002893	HPRD:04231	RBBP7	RbAp46	retinoblastoma binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_104569	chr9	94476663	94476758	+	4.39811	NA	Intergenic	Intergenic	-78083	NR_037489	100500902		NR_037489		MIR3910-2	-	microRNA 3910-2	ncRNA
19-PTNLD28-TUMOR_peak_76004	chr4	83695946	83696111	+	4.39713	NA	intron (NM_001037582, intron 1 of 4)	intron (NM_001037582, intron 1 of 4)	-21445	NR_030301	693160		NR_030301		MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
19-PTNLD28-TUMOR_peak_55357	chr2	121244690	121244793	+	4.39713	NA	Intergenic	Intergenic	-20816	NR_027181	84931	Hs.334519	NM_032845	HPRD:08604	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
19-PTNLD28-TUMOR_peak_30584	chr14	59750334	59750498	+	4.39713	NA	intron (NM_001270520, intron 2 of 24)	MIRb|SINE|MIR	20257	NM_014992	23002	Hs.19156	NM_014992	HPRD:09433	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
19-PTNLD28-TUMOR_peak_76166	chr4	87954355	87954460	+	4.39713	NA	intron (NM_005935, intron 1 of 19)	intron (NM_005935, intron 1 of 19)	26254	NM_005935	4299	Hs.480190	NM_005935	HPRD:08871	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_65894	chr22	45212332	45212420	+	4.39713	NA	intron (NM_001017526, intron 6 of 12)	intron (NM_001017526, intron 6 of 12)	63938	NM_001017526	23779	Hs.102336	NM_181335	HPRD:06448	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
19-PTNLD28-TUMOR_peak_83082	chr5	148451498	148451588	+	4.39713	NA	intron (NR_122044, intron 2 of 2)	MER21C|LTR|ERVL	8663	NR_122044	255187	Hs.149321	NR_122044		LOC255187	-	uncharacterized LOC255187	ncRNA
19-PTNLD28-TUMOR_peak_25681	chr12	96183970	96184147	+	4.39713	NA	exon (NM_021229, exon 1 of 10)	exon (NM_021229, exon 1 of 10)	478	NM_021229	59277	Hs.201034	NM_021229	HPRD:10121	NTN4	PRO3091	netrin 4	protein-coding
19-PTNLD28-TUMOR_peak_107012	chrUn_gl000215	67954	68163	+	4.39713	NA	promoter-TSS (NR_107036)	promoter-TSS (NR_107036)	-456	NR_107036	102466252		NR_107036		MIR8069-1	MIR8069|hsa-mir-8069	microRNA 8069-1	ncRNA
19-PTNLD28-TUMOR_peak_96580	chr7	154419723	154419842	+	4.39713	NA	intron (NM_001290252, intron 5 of 23)	intron (NM_001290252, intron 5 of 23)	-300445	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1OS	PAXIP1-AS2	PAXIP1 opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_51769	chr2	27886809	27886966	+	4.39713	NA	promoter-TSS (NM_001282731)	promoter-TSS (NM_001282731)	-180	NM_001282731	9913	Hs.6232	NM_014860	HPRD:18115	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	suppressor of Ty 7 (S. cerevisiae)-like	protein-coding
19-PTNLD28-TUMOR_peak_25590	chr12	93364850	93364981	+	4.39639	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-41808	NM_003566	8411	Hs.567367	NM_003566	HPRD:05460	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
19-PTNLD28-TUMOR_peak_70107	chr3	121032936	121033054	+	4.39639	NA	intron (NM_014980, intron 20 of 27)	SVA_E|Other|Other	231858	NM_199420	10721	Hs.241517	NM_199420	HPRD:10375	POLQ	POLH|PRO0327	polymerase (DNA directed), theta	protein-coding
19-PTNLD28-TUMOR_peak_17798	chr11	30606267	30606362	+	4.39639	NA	intron (NM_001145399, intron 1 of 6)	CpG	1616	NM_001145399	744	Hs.289795	NM_001584	HPRD:02947	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_60562	chr20	31886985	31887084	+	4.39639	NA	intron (NM_033197, intron 7 of 15)	intron (NM_033197, intron 7 of 15)	16093	NM_033197	92747	Hs.65551	NM_033197	HPRD:12740	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B, member 1	protein-coding
19-PTNLD28-TUMOR_peak_51627	chr2	25913017	25913105	+	4.39639	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-16545	NM_033148	1838	Hs.307720	NM_021907	HPRD:09091	DTNB	-	dystrobrevin, beta	protein-coding
19-PTNLD28-TUMOR_peak_31315	chr14	75667311	75667496	+	4.39639	NA	Intergenic	L2b|LINE|L2	-24054	NM_006827	10972	Hs.74137	NM_006827	HPRD:12013	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23	transmembrane emp24-like trafficking protein 10 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_32038	chr14	100512119	100512287	+	4.39639	NA	Intergenic	Intergenic	-19548	NM_016337	51466	Hs.125867	NM_016337	HPRD:10942	EVL	RNB6	Enah/Vasp-like	protein-coding
19-PTNLD28-TUMOR_peak_58131	chr2	210126499	210126594	+	4.39639	NA	Intergenic	L1PA5|LINE|L1	-162225	NM_001039538	4133	Hs.368281	NM_002374	HPRD:01140	MAP2	MAP2A|MAP2B|MAP2C	microtubule-associated protein 2	protein-coding
19-PTNLD28-TUMOR_peak_16063	chr10	124325411	124325611	+	4.39364	NA	exon (NM_007329, exon 2 of 53)	exon (NM_007329, exon 2 of 53)	5330	NM_004406	1755	Hs.279611	NM_004406	HPRD:03575	DMBT1	GP340|muclin	deleted in malignant brain tumors 1	protein-coding
19-PTNLD28-TUMOR_peak_106595	chr9	136325732	136325896	+	4.39364	NA	intron (NM_001242369, intron 1 of 5)	intron (NM_001242369, intron 1 of 5)	727	NM_001242369	11094	Hs.62003	NM_017586	HPRD:12974	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42702	chr17	58213020	58213108	+	4.39364	NA	Intergenic	CpG	-14238	NM_000717	762	Hs.89485	NM_000717	HPRD:00261	CA4	CAIV|Car4|RP17	carbonic anhydrase IV	protein-coding
19-PTNLD28-TUMOR_peak_51756	chr2	27717981	27718148	+	4.39364	NA	promoter-TSS (NM_022823)	promoter-TSS (NM_022823)	62	NM_022823	64838	Hs.27836	NM_022823	HPRD:09965	FNDC4	FRCP1	fibronectin type III domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_28533	chr13	77460778	77461048	+	4.39364	NA	promoter-TSS (NM_138444)	promoter-TSS (NM_138444)	-373	NM_138444	115207	Hs.644125	NM_138444	HPRD:11060	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_105054	chr9	104248674	104248785	+	4.39364	NA	intron (NM_032342, intron 1 of 1)	CpG	746	NM_032342	84302	Hs.655738	NM_032342		TMEM246	C9orf125	transmembrane protein 246	protein-coding
19-PTNLD28-TUMOR_peak_14394	chr10	76994367	76994630	+	4.39364	NA	exon (NM_144589, exon 6 of 7)	exon (NM_144589, exon 6 of 7)	1272	NM_144589	118881	Hs.355333	NM_144589	HPRD:08678	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_83574	chr5	159274362	159274568	+	4.39364	NA	intron (NR_109891, intron 2 of 2)	intron (NR_109891, intron 2 of 2)	23926	NR_109891	101927766	Hs.638568	NR_109891	ENSG00000253311	LOC101927766	-	uncharacterized LOC101927766	ncRNA
19-PTNLD28-TUMOR_peak_6750	chr1	151171419	151171570	+	4.38871	NA	exon (NM_001135637, exon 1 of 14)	exon (NM_001135637, exon 1 of 14)	473	NM_001135638	8394	Hs.655131	NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase, type I, alpha	protein-coding
19-PTNLD28-TUMOR_peak_73724	chr4	125433	125531	+	4.38600	NA	intron (NM_001289930, intron 1 of 1)	intron (NM_001289930, intron 1 of 1)	1124	NM_001289930	255403	Hs.636638	NM_001039127		ZNF718	-	zinc finger protein 718	protein-coding
19-PTNLD28-TUMOR_peak_82728	chr5	140892032	140892207	+	4.38160	NA	3' UTR (NM_018929, exon 4 of 4)	3' UTR (NM_018929, exon 4 of 4)	23311	NM_018929	56097	Hs.368160	NM_018929	HPRD:07318	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
19-PTNLD28-TUMOR_peak_12956	chr10	35930660	35930857	+	4.38160	NA	promoter-TSS (NM_031866)	promoter-TSS (NM_031866)	-396	NM_031866	8325	Hs.302634	NM_031866	HPRD:05852	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
19-PTNLD28-TUMOR_peak_96699	chr7	156932193	156932373	+	4.38160	NA	intron (NM_014671, intron 1 of 22)	intron (NM_014671, intron 1 of 22)	628	NM_014671	9690	Hs.118351	NM_014671	HPRD:15604	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding
19-PTNLD28-TUMOR_peak_58682	chr2	227655888	227655976	+	4.38127	NA	intron (NM_005544, intron 1 of 1)	CpG	7574	NM_005544	3667	Hs.471508	NM_005544	HPRD:00943	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
19-PTNLD28-TUMOR_peak_79702	chr5	43007676	43007765	+	4.38127	NA	Intergenic	MER61D|LTR|ERV1	11193	NR_034086	648987	Hs.649468	NR_034085	ENSG00000177738	LOC648987	-	uncharacterized LOC648987	ncRNA
19-PTNLD28-TUMOR_peak_37250	chr16	30621121	30621468	+	4.38127	NA	promoter-TSS (NR_104166)	promoter-TSS (NR_104166)	-145	NR_104166	115509	Hs.454685	NM_138447	HPRD:14009	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
19-PTNLD28-TUMOR_peak_68544	chr3	57542220	57542586	+	4.38127	NA	exon (NM_177966, exon 1 of 3)	exon (NM_177966, exon 1 of 3)	422	NM_177966	201626	Hs.572993	NM_177966		PDE12	2'-PDE	phosphodiesterase 12	protein-coding
19-PTNLD28-TUMOR_peak_60802	chr20	35170515	35170628	+	4.37879	NA	intron (NM_006097, intron 1 of 3)	intron (NM_006097, intron 1 of 3)	684	NM_181526	10398	Hs.504687	NM_006097	HPRD:17619	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	myosin, light chain 9, regulatory	protein-coding
19-PTNLD28-TUMOR_peak_1703	chr1	27018840	27019096	+	4.37728	NA	Intergenic	Intergenic	-3554	NM_006015	8289	Hs.468972	NM_006015	HPRD:04319	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT rich interactive domain 1A (SWI-like)	protein-coding
19-PTNLD28-TUMOR_peak_18945	chr11	61873404	61873492	+	4.37673	NA	Intergenic	Intergenic	-17997	NM_001040694	3619	Hs.142179	NM_020238	HPRD:05103	INCENP	-	inner centromere protein antigens 135/155kDa	protein-coding
19-PTNLD28-TUMOR_peak_109963	chrX	153616628	153616724	+	4.37323	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	9079	NM_000117	2010	Hs.522823	NM_000117	HPRD:02309	EMD	EDMD|LEMD5|STA	emerin	protein-coding
19-PTNLD28-TUMOR_peak_5688	chr1	115054459	115054547	+	4.37149	NA	promoter-TSS (NM_015906)	promoter-TSS (NM_015906)	-722	NM_033020	51592	Hs.26837	NM_015906	HPRD:10423	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
19-PTNLD28-TUMOR_peak_20867	chr11	102470087	102470184	+	4.37149	NA	intron (NM_004771, intron 6 of 9)	MIRc|SINE|MIR	25928	NM_004771	9313	Hs.591946	NM_004771	HPRD:05218	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
19-PTNLD28-TUMOR_peak_45331	chr18	37380225	37380371	+	4.37091	NA	Intergenic	MER61A|LTR|ERV1	-48339	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	LINC00669	-	long intergenic non-protein coding RNA 669	ncRNA
19-PTNLD28-TUMOR_peak_47736	chr19	15590921	15591009	+	4.37091	NA	promoter-TSS (NM_052890)	promoter-TSS (NM_052890)	-650	NM_052890	114770	Hs.282244	NM_052890	HPRD:10495	PGLYRP2	HMFT0141|PGLYRPL|PGRP-L|PGRPL|TAGL-like|tagL|tagL-alpha|tagl-beta	peptidoglycan recognition protein 2	protein-coding
19-PTNLD28-TUMOR_peak_77619	chr4	152967544	152967693	+	4.37091	NA	Intergenic	Intergenic	-54287	NR_121628	100996286	Hs.322462	NR_121627	ENSG00000245954	LOC100996286	-	uncharacterized LOC100996286	ncRNA
19-PTNLD28-TUMOR_peak_57143	chr2	177418920	177419187	+	4.37091	NA	Intergenic	Intergenic	46727	NR_031648	100302142		NR_031648		MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
19-PTNLD28-TUMOR_peak_104982	chr9	102261055	102261291	+	4.37091	NA	Intergenic	L1PA2|LINE|L1	-123634	NR_102270	100996569	Hs.745280	NR_102270	ENSG00000271086	NAMA	-	non-protein coding RNA, associated with MAP kinase pathway and growth arrest	ncRNA
19-PTNLD28-TUMOR_peak_85120	chr6	6927836	6928069	+	4.37091	NA	Intergenic	Intergenic	-179878	NM_001168344	6239	Hs.298248	NM_002955	HPRD:03733	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_78480	chr4	189972197	189972286	+	4.37091	NA	Intergenic	Intergenic	595509	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
19-PTNLD28-TUMOR_peak_101487	chr8	142409145	142409304	+	4.37053	NA	Intergenic	Intergenic	-22264	NM_007079	11156	Hs.43666	NM_007079		PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding
19-PTNLD28-TUMOR_peak_45479	chr18	43678436	43678567	+	4.37053	NA	promoter-TSS (NM_001257335)	promoter-TSS (NM_001257335)	-182	NM_004046	498	Hs.298280	NM_004046	HPRD:01258	ATP5A1	ATP5A|ATP5AL2|ATPM|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	protein-coding
19-PTNLD28-TUMOR_peak_34192	chr15	69113234	69113332	+	4.37053	NA	promoter-TSS (NM_006305)	promoter-TSS (NM_006305)	-22	NM_006305	8125	Hs.458747	NM_006305	HPRD:09014	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_65757	chr22	42978047	42978315	+	4.37053	NA	promoter-TSS (NR_002184)	promoter-TSS (NR_002184)	-164	NR_002184	91695	Hs.534041	NR_002184	ENSG00000182841	RRP7B	dJ222E13.2	ribosomal RNA processing 7 homolog B (S. cerevisiae)	pseudo
19-PTNLD28-TUMOR_peak_28337	chr13	53420300	53420518	+	4.37053	NA	exon (NM_002590, exon 1 of 3)	exon (NM_002590, exon 1 of 3)	2366	NM_032949	5100	Hs.19492	NM_002590	HPRD:04660	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
19-PTNLD28-TUMOR_peak_7507	chr1	159141578	159141678	+	4.37053	NA	exon (NM_021189, exon 1 of 10)	exon (NM_021189, exon 1 of 10)	214	NM_001127173	57863	Hs.365689	NM_021189	HPRD:13733	CADM3	BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding
19-PTNLD28-TUMOR_peak_11042	chr1	234987296	234987384	+	4.36568	NA	Intergenic	Intergenic	127551	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
19-PTNLD28-TUMOR_peak_32017	chr14	100203814	100204024	+	4.36568	NA	Intergenic	Intergenic	53164	NM_006668	10858	Hs.25121	NM_006668	HPRD:04970	CYP46A1	CP46|CYP46	cytochrome P450, family 46, subfamily A, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_15449	chr10	105614514	105614602	+	4.36568	NA	intron (NM_014631, intron 1 of 13)	CpG	606	NM_014631	9644	Hs.678727	NM_014631	HPRD:10228	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
19-PTNLD28-TUMOR_peak_23756	chr12	38532186	38532331	+	4.36568	NA	Intergenic	CpG	-178299	NM_001013620	144245	Hs.259305	NM_001013620		ALG10B	ALG10|KCR1	ALG10B, alpha-1,2-glucosyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_22535	chr12	3294585	3294700	+	4.36568	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	108121	NM_006675	10867	Hs.504517	NM_006675	HPRD:14823	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
19-PTNLD28-TUMOR_peak_51014	chr2	9953902	9953990	+	4.36568	NA	Intergenic	Intergenic	-29625	NM_005680	9014	Hs.584833	NM_005680	HPRD:05363	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa	protein-coding
19-PTNLD28-TUMOR_peak_91632	chr7	23675783	23675979	+	4.36568	NA	intron (NM_138771, intron 3 of 3)	SVA_E|Other|Other	38883	NM_138771	90693	Hs.232296	NM_138771	HPRD:14278	CCDC126	-	coiled-coil domain containing 126	protein-coding
19-PTNLD28-TUMOR_peak_19687	chr11	69503398	69503544	+	4.36568	NA	Intergenic	L1MC5|LINE|L1	-13306	NM_153451	220064	Hs.667996	NM_153451	HPRD:06245	ORAOV1	TAOS1	oral cancer overexpressed 1	protein-coding
19-PTNLD28-TUMOR_peak_40052	chr17	8023489	8023683	+	4.36454	NA	TTS (NM_032580)	TTS (NM_032580)	-1352	NM_001165960	59344	Hs.232770	NM_021628	HPRD:06231	ALOXE3	ARCI3|E-LOX|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_4894	chr1	93426900	93426997	+	4.36423	NA	exon (NM_001006605, exon 1 of 5)	exon (NM_001006605, exon 1 of 5)	131	NM_001252269	388650	Hs.180946	NM_001006605	HPRD:14204	FAM69A	-	family with sequence similarity 69, member A	protein-coding
19-PTNLD28-TUMOR_peak_24941	chr12	63292464	63292552	+	4.36175	NA	intron (NM_020700, intron 1 of 9)	intron (NM_020700, intron 1 of 9)	36157	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent, 1H	protein-coding
19-PTNLD28-TUMOR_peak_4360	chr1	74446441	74446648	+	4.36175	NA	Intergenic	Intergenic	217327	NM_001105659	127255	Hs.644625	NM_145258	HPRD:14485	LRRIQ3	LRRC44	leucine-rich repeats and IQ motif containing 3	protein-coding
19-PTNLD28-TUMOR_peak_104680	chr9	96860147	96860276	+	4.36175	NA	exon (NM_001253830, exon 7 of 10)	exon (NM_001253830, exon 7 of 10)	13500	NM_001253829	138639	Hs.437943	NM_152422	HPRD:06689	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_15749	chr10	115923322	115923479	+	4.36175	NA	intron (NM_018017, intron 1 of 15)	intron (NM_018017, intron 1 of 15)	10538	NR_031747	100302224		NR_031747	miRBase:MI0010629	MIR2110	hsa-mir-2110	microRNA 2110	ncRNA
19-PTNLD28-TUMOR_peak_88768	chr6	91057429	91057542	+	4.36175	NA	Intergenic	Intergenic	35024	NR_039671	100616109		NR_039671	miRBase:MI0016812	MIR4464	-	microRNA 4464	ncRNA
19-PTNLD28-TUMOR_peak_90087	chr6	152259681	152259769	+	4.36175	NA	intron (NM_001291230, intron 4 of 8)	intron (NM_001291230, intron 4 of 8)	130911	NM_000125	2099	Hs.208124	NM_000125	HPRD:00589	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_61014	chr20	37835699	37836011	+	4.36175	NA	Intergenic	MLT2F|LTR|ERVL	17536	NR_027124	339568	Hs.434319	NR_027124	ENSG00000230324	LOC339568	-	uncharacterized LOC339568	ncRNA
19-PTNLD28-TUMOR_peak_103814	chr9	74747022	74747365	+	4.36175	NA	intron (NM_001242507, intron 1 of 13)	HERV16-int|LTR|ERVL	-17074	NM_001242506	9615	Hs.494163	NM_004293	HPRD:08849	GDA	CYPIN|GUANASE|NEDASIN	guanine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_71813	chr3	153068328	153068441	+	4.36175	NA	Intergenic	Intergenic	-133900	NM_001101337	152118	Hs.58586	NM_001101337	ENSG00000237787	C3orf79	-	chromosome 3 open reading frame 79	protein-coding
19-PTNLD28-TUMOR_peak_27553	chr13	27033628	27033826	+	4.36175	NA	Intergenic	Intergenic	-98113	NM_001291965	10810	Hs.618732	NM_006646	HPRD:05458	WASF3	Brush-1|SCAR3|WAVE3	WAS protein family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_52888	chr2	56675668	56676046	+	4.36175	NA	Intergenic	Intergenic	-262952	NR_125368	100129434	Hs.580330	NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
19-PTNLD28-TUMOR_peak_93526	chr7	76390324	76390422	+	4.36175	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-133753	NM_012230	22932	Hs.488877	NM_012230	HPRD:15974	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
19-PTNLD28-TUMOR_peak_4760	chr1	89727779	89727959	+	4.36138	NA	intron (NM_001134486, intron 10 of 10)	intron (NM_001134486, intron 10 of 10)	10675	NM_052942	115362	Hs.513726	NM_052942	HPRD:13571	GBP5	GBP-5	guanylate binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_68158	chr3	49828530	49828618	+	4.36058	NA	intron (NM_001007540, intron 18 of 18)	intron (NM_001007540, intron 18 of 18)	-4601	NM_153273	9807	Hs.386168	NM_153273	HPRD:07379	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_60683	chr20	33571973	33572104	+	4.35981	NA	intron (NM_020884, intron 10 of 44)	L2c|LINE|L2	-6141	NR_030223	574501		NR_030223		MIR499A	MIR499|MIRN499|hsa-mir-499a	microRNA 499a	ncRNA
19-PTNLD28-TUMOR_peak_11733	chr10	3818256	3818426	+	4.35232	NA	non-coding (NR_027653, exon 4 of 4)	non-coding (NR_027653, exon 4 of 4)	9132	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_44072	chr17	80199853	80200025	+	4.35186	NA	TTS (NM_001893)	TTS (NM_001893)	5395	NR_106845	102465472		NR_106845		MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
19-PTNLD28-TUMOR_peak_47178	chr19	10230318	10230407	+	4.35116	NA	exon (NM_003755, exon 2 of 11)	exon (NM_003755, exon 2 of 11)	237	NM_003755	8666	Hs.529059	NM_003755	HPRD:04886	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3, subunit G	protein-coding
19-PTNLD28-TUMOR_peak_96078	chr7	143532395	143532495	+	4.34811	NA	intron (NR_015421, intron 1 of 2)	intron (NR_015421, intron 1 of 2)	1365	NR_015421	154761	Hs.716689	NR_015421	ENSG00000253882	LOC154761	-	family with sequence similarity 115, member C pseudogene	pseudo
19-PTNLD28-TUMOR_peak_44404	chr18	6781554	6781697	+	4.34789	NA	Intergenic	Intergenic	-52807	NM_001010000	79822	Hs.183114	NM_030672	HPRD:10961	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
19-PTNLD28-TUMOR_peak_72386	chr3	172340840	172340984	+	4.34789	NA	Intergenic	Intergenic	88096	NM_001146278	57552	Hs.444099	NM_020792	HPRD:07489	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_3133	chr1	45314688	45314873	+	4.34789	NA	Intergenic	Intergenic	-6164	NM_003738	8643	Hs.591497	NM_003738	HPRD:04722	PTCH2	PTC2	patched 2	protein-coding
19-PTNLD28-TUMOR_peak_44403	chr18	6781211	6781326	+	4.34789	NA	Intergenic	Intergenic	-53164	NM_001010000	79822	Hs.183114	NM_030672	HPRD:10961	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
19-PTNLD28-TUMOR_peak_56660	chr2	162094482	162094695	+	4.34789	NA	intron (NR_110593, intron 3 of 3)	CpG	-6662	NR_110163	100996579	Hs.660929	NR_110163		LOC100996579	-	uncharacterized LOC100996579	ncRNA
19-PTNLD28-TUMOR_peak_24126	chr12	49690432	49690520	+	4.34789	NA	intron (NR_120449, intron 5 of 7)	CpG	1567	NM_006262	5630	Hs.37044	NM_006262		PRPH	NEF4|PRPH1	peripherin	protein-coding
19-PTNLD28-TUMOR_peak_89627	chr6	137814449	137814537	+	4.34517	NA	exon (NM_175747, exon 1 of 1)	exon (NM_175747, exon 1 of 1)	1038	NM_175747	167826	Hs.195398	NM_175747	HPRD:17662	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
19-PTNLD28-TUMOR_peak_94037	chr7	95179585	95179673	+	4.34517	NA	Intergenic	Intergenic	46296	NM_002612	5166	Hs.8364	NM_002612	HPRD:03957	PDK4	-	pyruvate dehydrogenase kinase, isozyme 4	protein-coding
19-PTNLD28-TUMOR_peak_80640	chr5	72922320	72922587	+	4.34517	NA	intron (NM_001080479, intron 1 of 36)	CpG	470	NM_001080479	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_91358	chr7	16312072	16312160	+	4.34517	NA	intron (NM_001101417, intron 5 of 8)	intron (NM_001101417, intron 5 of 8)	62005	NR_038947	100506025	Hs.649029	NR_038946	ENSG00000229688	ISPD-AS1	-	ISPD antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_49054	chr19	40697830	40697918	+	4.34517	NA	5' UTR (NM_002446, exon 1 of 10)	5' UTR (NM_002446, exon 1 of 10)	223	NM_002446	4294	Hs.466743	NM_002446	HPRD:02533	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
19-PTNLD28-TUMOR_peak_95046	chr7	126988171	126988270	+	4.34517	NA	Intergenic	CpG	44547	NM_176814	168850	Hs.159006	NM_176814	HPRD:14112	ZNF800	-	zinc finger protein 800	protein-coding
19-PTNLD28-TUMOR_peak_71792	chr3	152553170	152553276	+	4.34381	NA	5' UTR (NM_002563, exon 1 of 1)	5' UTR (NM_002563, exon 1 of 1)	487	NM_002563	5028	Hs.654526	NM_002563	HPRD:03103	P2RY1	P2Y1	purinergic receptor P2Y, G-protein coupled, 1	protein-coding
19-PTNLD28-TUMOR_peak_73201	chr3	190280973	190281061	+	4.34114	NA	intron (NM_002182, intron 2 of 11)	MIRb|SINE|MIR	49177	NM_001167931	3556	Hs.478673	NM_002182	HPRD:04021	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
19-PTNLD28-TUMOR_peak_78695	chr5	1653793	1653881	+	4.34114	NA	Intergenic	Intergenic	-19717	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_126	chr1	1225682	1225770	+	4.34011	NA	exon (NM_001130413, exon 13 of 18)	exon (NM_001130413, exon 13 of 18)	5824	NR_106784	102465434		NR_106784		MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
19-PTNLD28-TUMOR_peak_44347	chr18	3603539	3603657	+	4.33809	NA	promoter-TSS (NR_119377)	promoter-TSS (NR_119377)	-137	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_74627	chr4	15932176	15932274	+	4.33560	NA	Intergenic	L2b|LINE|L2	8138	NM_005130	9982	Hs.1690	NM_005130	HPRD:06371	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_90111	chr6	153273325	153273473	+	4.33560	NA	Intergenic	L2b|LINE|L2	30804	NM_012177	26271	Hs.520506	NM_012177	HPRD:09348	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
19-PTNLD28-TUMOR_peak_64568	chr22	21922144	21922326	+	4.33560	NA	non-coding (NR_046082, exon 1 of 4)	non-coding (NR_046082, exon 1 of 4)	216	NR_046082	7332	Hs.108104	NM_003347	HPRD:04762	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin-conjugating enzyme E2L 3	protein-coding
19-PTNLD28-TUMOR_peak_89283	chr6	119670558	119670794	+	4.33560	NA	intron (NM_005907, intron 1 of 12)	CpG-22500	255	NM_005907	4121	Hs.102788	NM_005907	HPRD:05066	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase, alpha, class 1A, member 1	protein-coding
19-PTNLD28-TUMOR_peak_64775	chr22	24906793	24906892	+	4.33560	NA	intron (NM_016327, intron 4 of 9)	intron (NM_016327, intron 4 of 9)	15591	NM_016327	51733	Hs.731656	NM_016327	HPRD:09451	UPB1	BUP1	ureidopropionase, beta	protein-coding
19-PTNLD28-TUMOR_peak_26105	chr12	108258011	108258168	+	4.33560	NA	Intergenic	LTR12D|LTR|ERV1	39459	NR_037629	728739	Hs.741995	NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_33131	chr15	40212398	40212655	+	4.33560	NA	5' UTR (NM_007223, exon 1 of 3)	5' UTR (NM_007223, exon 1 of 3)	567	NM_001271854	11245	Hs.37196	NM_007223	HPRD:13597	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
19-PTNLD28-TUMOR_peak_65295	chr22	36044970	36045058	+	4.33560	NA	intron (NM_030641, intron 1 of 2)	intron (NM_030641, intron 1 of 2)	590	NM_030641	80830	Hs.257352	NM_030641	HPRD:06266	APOL6	APOL-VI|APOLVI	apolipoprotein L, 6	protein-coding
19-PTNLD28-TUMOR_peak_30802	chr14	65228703	65228863	+	4.32795	NA	intron (NM_001024858, intron 31 of 34)	intron (NM_001024858, intron 31 of 34)	23621	NR_107009	102465841		NR_107009		MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
19-PTNLD28-TUMOR_peak_109765	chrX	150067544	150067644	+	4.32717	NA	promoter-TSS (NM_001184808)	promoter-TSS (NM_001184808)	-305	NM_134446	83692	Hs.522805	NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule-like 2	protein-coding
19-PTNLD28-TUMOR_peak_19081	chr11	63530956	63531045	+	4.32717	NA	exon (NM_001144936, exon 5 of 5)	exon (NM_001144936, exon 5 of 5)	5113	NM_001144936	65998	Hs.191073	NM_001144936		C11orf95	-	chromosome 11 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_81654	chr5	114759312	114759415	+	4.32540	NA	Intergenic	Intergenic	121228	NM_020177	56929	Hs.47367	NM_020177	HPRD:16384	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog c (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_75710	chr4	76326403	76326531	+	4.32540	NA	Intergenic	L1PA2|LINE|L1	47181	NR_033964	441025	Hs.407667	NR_033964	ENSG00000251383	LOC441025	-	uncharacterized LOC441025	ncRNA
19-PTNLD28-TUMOR_peak_63641	chr21	42493807	42493978	+	4.32540	NA	Intergenic	LTR41B|LTR|ERVL	26099	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_96950	chr8	7007183	7007353	+	4.32540	NA	Intergenic	Intergenic	-93009	NM_021010	1670	Hs.655233	NM_021010	HPRD:02720	DEFA5	DEF5|HD-5	defensin, alpha 5, Paneth cell-specific	protein-coding
19-PTNLD28-TUMOR_peak_79471	chr5	35494554	35494714	+	4.32540	NA	Intergenic	L1P2|LINE|L1	-123355	NM_144722	79925	Hs.298863	NM_024867	HPRD:11181	SPEF2	CT122|KPL2	sperm flagellar 2	protein-coding
19-PTNLD28-TUMOR_peak_56471	chr2	158114123	158114211	+	4.32540	NA	promoter-TSS (NM_014568)	promoter-TSS (NM_014568)	-173	NM_014568	11227	Hs.269027	NM_014568		GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_56198	chr2	148394291	148394387	+	4.32540	NA	Intergenic	Intergenic	-207747	NM_001278580	92	Hs.470174	NM_001616	HPRD:00025	ACVR2A	ACTRII|ACVR2	activin A receptor, type IIA	protein-coding
19-PTNLD28-TUMOR_peak_9049	chr1	197149492	197149663	+	4.32540	NA	intron (NM_194314, intron 5 of 9)	intron (NM_194314, intron 5 of 9)	20095	NM_194314	360023	Hs.529439	NM_194314	HPRD:17017	ZBTB41	FRBZ1|ZNF924	zinc finger and BTB domain containing 41	protein-coding
19-PTNLD28-TUMOR_peak_68963	chr3	71419224	71419408	+	4.32540	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-65405	NM_001244812	27086	Hs.59368	NM_032682	HPRD:18518	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
19-PTNLD28-TUMOR_peak_36317	chr16	11745800	11745903	+	4.32540	NA	Intergenic	Intergenic	-16438	NM_003498	8303	Hs.618526	NM_003498	HPRD:04327	SNN	-	stannin	protein-coding
19-PTNLD28-TUMOR_peak_75362	chr4	55524074	55524245	+	4.32540	NA	promoter-TSS (NM_000222)	promoter-TSS (NM_000222)	64	NM_001093772	3815	Hs.479754	NM_000222	HPRD:01287	KIT	C-Kit|CD117|PBT|SCFR	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_23993	chr12	47489391	47489483	+	4.32540	NA	intron (NM_001281429, intron 1 of 2)	L1ME3A|LINE|L1	-15703	NM_001143668	347902	Hs.121520	NM_181847	HPRD:16483	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig-like domain 2	protein-coding
19-PTNLD28-TUMOR_peak_109953	chrX	153542747	153542891	+	4.32540	NA	intron (NM_012253, intron 6 of 12)	intron (NM_012253, intron 6 of 12)	9410	NM_001145934	8277	Hs.102866	NM_012253	HPRD:02080	TKTL1	TKR|TKT2	transketolase-like 1	protein-coding
19-PTNLD28-TUMOR_peak_47350	chr19	11734644	11734829	+	4.32540	NA	Intergenic	HERVK3-int|LTR|ERVK	26501	NM_001290085	199692	Hs.526665	NM_145295	HPRD:18360	ZNF627	-	zinc finger protein 627	protein-coding
19-PTNLD28-TUMOR_peak_59753	chr20	9554315	9554472	+	4.32540	NA	intron (NM_177990, intron 4 of 9)	intron (NM_177990, intron 4 of 9)	-58748	NR_109957	101929329	Hs.589878	NR_109957	ENSG00000225988	LAMP5-AS1	-	LAMP5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_96661	chr7	156286777	156286885	+	4.32540	NA	intron (NR_103858, intron 1 of 1)	intron (NR_103858, intron 1 of 1)	-46354	NR_024119	64433	Hs.404170	NR_024119		LINC00244	C7orf4|NCRNA00244	long intergenic non-protein coding RNA 244	ncRNA
19-PTNLD28-TUMOR_peak_9679	chr1	205888234	205888322	+	4.32540	NA	intron (NM_134325, intron 18 of 21)	intron (NM_134325, intron 18 of 21)	24310	NM_134325	115019	Hs.164073	NM_052934	HPRD:12242	SLC26A9	-	solute carrier family 26 (anion exchanger), member 9	protein-coding
19-PTNLD28-TUMOR_peak_23887	chr12	44839481	44839622	+	4.32540	NA	Intergenic	Intergenic	429893	NM_001145109	4753	Hs.505326	NM_006159	HPRD:11891	NELL2	NRP2	NEL-like 2 (chicken)	protein-coding
19-PTNLD28-TUMOR_peak_89338	chr6	125203440	125203528	+	4.32540	NA	Intergenic	Intergenic	-80207	NM_001286398	154214	Hs.368639	NM_152553	HPRD:17125	RNF217	C6orf172|IBRDC1|dJ84N20.1	ring finger protein 217	protein-coding
19-PTNLD28-TUMOR_peak_93243	chr7	73476216	73476304	+	4.32531	NA	intron (NM_001278939, intron 27 of 33)	intron (NM_001278939, intron 27 of 33)	-21847	NM_002314	3984	Hs.647035	NM_002314	HPRD:03210	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_57601	chr2	196522249	196522431	+	4.32531	NA	intron (NM_020342, intron 1 of 9)	CpG	488	NM_020342	57181	Hs.650158	NM_020342	HPRD:10572	SLC39A10	LZT-Hs2	solute carrier family 39 (zinc transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_39464	chr16	89555610	89555797	+	4.32449	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	1266	NR_045839	29123	Hs.335003	NM_013275	HPRD:12456	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain 11	protein-coding
19-PTNLD28-TUMOR_peak_103847	chr9	75169255	75169492	+	4.32361	NA	intron (NM_138691, intron 1 of 23)	intron (NM_138691, intron 1 of 23)	32656	NM_138691	117531	Hs.670211	NM_138691	HPRD:05988	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel-like 1	protein-coding
19-PTNLD28-TUMOR_peak_47254	chr19	10829018	10829216	+	4.32247	NA	promoter-TSS (NR_030368)	promoter-TSS (NR_030368)	37	NR_030368	693223		NR_030368		MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
19-PTNLD28-TUMOR_peak_68187	chr3	50192739	50192928	+	4.32129	NA	promoter-TSS (NM_004186)	promoter-TSS (NM_004186)	-15	NM_004186	6405	Hs.32981	NM_004186	HPRD:03079	SEMA3F	SEMA-IV|SEMA4|SEMAK	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding
19-PTNLD28-TUMOR_peak_59233	chr2	241177415	241177503	+	4.32129	NA	Intergenic	L1MC4a|LINE|L1	-97386	NM_148961	150677	Hs.148586	NM_148961	HPRD:09714	OTOS	OTOSP	otospiralin	protein-coding
19-PTNLD28-TUMOR_peak_12399	chr10	23633582	23633749	+	4.32129	NA	exon (NM_153714, exon 1 of 5)	exon (NM_153714, exon 1 of 5)	107	NM_153714	256815	Hs.522360	NM_153714	HPRD:12585	C10orf67	-	chromosome 10 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_40829	chr17	27377336	27377424	+	4.32129	NA	intron (NM_016518, intron 2 of 7)	intron (NM_016518, intron 2 of 7)	7462	NM_016518	51268	Hs.462585	NM_016518	HPRD:17853	PIPOX	LPIPOX	pipecolic acid oxidase	protein-coding
19-PTNLD28-TUMOR_peak_48269	chr19	23253227	23253440	+	4.31977	NA	Intergenic	CpG	-9266	NR_110745	101929144	Hs.531631	NR_110745	ENSG00000261615	LOC101929144	-	uncharacterized LOC101929144	ncRNA
19-PTNLD28-TUMOR_peak_82852	chr5	142246675	142246763	+	4.31977	NA	intron (NR_046680, intron 2 of 5)	intron (NR_046680, intron 2 of 5)	1756	NR_046680	100874239	Hs.570896	NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58861	chr2	232791025	232791115	+	4.31977	NA	promoter-TSS (NM_024409)	promoter-TSS (NM_024409)	-32	NM_024409	4880	Hs.247916	NM_024409		NPPC	CNP|CNP2	natriuretic peptide C	protein-coding
19-PTNLD28-TUMOR_peak_22491	chr12	2800336	2800424	+	4.31977	NA	promoter-TSS (NR_045725)	promoter-TSS (NR_045725)	-57	NR_045725	100652846	Hs.683896	NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34457	chr15	74331587	74331694	+	4.31977	NA	intron (NM_033249, intron 6 of 6)	intron (NM_033249, intron 6 of 6)	43251	NM_001038640	342096	Hs.546408	NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family, member A	protein-coding
19-PTNLD28-TUMOR_peak_105499	chr9	115849810	115850011	+	4.31727	NA	Intergenic	CpG	24047	NR_024376	100128385	Hs.99052	NR_024376	ENSG00000225684	FAM225B	C9orf110|LINC00256B|NCRNA00256B	family with sequence similarity 225, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_84290	chr5	176738494	176738639	+	4.31587	NA	intron (NM_001142935, intron 1 of 5)	CpG	726	NM_031300	83463	Hs.743332	NM_031300	HPRD:14791	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
19-PTNLD28-TUMOR_peak_64130	chr21	47878097	47878222	+	4.31587	NA	promoter-TSS (NM_206891)	promoter-TSS (NM_206891)	-703	NM_206890	23181	Hs.189585	NM_015151	HPRD:07611	DIP2A	C21orf106|DIP2	DIP2 disco-interacting protein 2 homolog A (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_103016	chr9	37943811	37943962	+	4.31249	NA	intron (NM_003028, intron 5 of 5)	intron (NM_003028, intron 5 of 5)	-39536	NR_024873	92014	Hs.634120	NM_033412	HPRD:14370	SLC25A51	CG7943|MCART1	solute carrier family 25, member 51	protein-coding
19-PTNLD28-TUMOR_peak_40076	chr17	8124640	8124925	+	4.31214	NA	non-coding (NR_026951, exon 3 of 3)	non-coding (NR_026951, exon 3 of 3)	2579	NR_026951	284029	Hs.121692	NM_173621	HPRD:08755	LINC00324	C17orf44|NCRNA00324	long intergenic non-protein coding RNA 324	ncRNA
19-PTNLD28-TUMOR_peak_13558	chr10	50747525	50747731	+	4.31107	NA	promoter-TSS (NM_000124)	promoter-TSS (NM_000124)	-44	NM_001277059	101243544	Hs.49063	NM_001277058	ENSG00000243251	ERCC6-PGBD3	CPFP|CSB-PGBD3	ERCC6-PGBD3 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_94204	chr7	98972124	98972367	+	4.30698	NA	promoter-TSS (NM_005720)	promoter-TSS (NM_005720)	-53	NM_005720	10095	Hs.489284	NM_005720	HPRD:10366	ARPC1B	ARC41|p40-ARC|p41-ARC	actin related protein 2/3 complex, subunit 1B, 41kDa	protein-coding
19-PTNLD28-TUMOR_peak_15429	chr10	105436049	105436137	+	4.30559	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	-70444	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_19721	chr11	70042230	70042422	+	4.30559	NA	Intergenic	Intergenic	-6943	NM_003824	8772	Hs.86131	NM_003824	HPRD:03909	FADD	MORT1	Fas (TNFRSF6)-associated via death domain	protein-coding
19-PTNLD28-TUMOR_peak_101663	chr8	144843089	144843280	+	4.30559	NA	Intergenic	CpG	26874	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	-	FAM83H antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_43255	chr17	71258599	71258695	+	4.30559	NA	promoter-TSS (NM_001129885)	promoter-TSS (NM_001129885)	-628	NM_001129885	642843	Hs.534707	NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4-like	protein-coding
19-PTNLD28-TUMOR_peak_56579	chr2	160654533	160654757	+	4.30559	NA	exon (NM_001198763, exon 1 of 5)	exon (NM_001198763, exon 1 of 5)	121	NM_001198764	9936	Hs.130014	NM_014880	HPRD:09906	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
19-PTNLD28-TUMOR_peak_33892	chr15	63188343	63188462	+	4.30553	NA	Intergenic	Intergenic	72246	NR_029709	406965		NR_029709		MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190	microRNA 190a	ncRNA
19-PTNLD28-TUMOR_peak_72799	chr3	184310811	184310951	+	4.30553	NA	Intergenic	Intergenic	31294	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_90243	chr6	158181997	158182090	+	4.30347	NA	Intergenic	Intergenic	-62160	NM_016224	51429	Hs.191213	NM_016224	HPRD:12072	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
19-PTNLD28-TUMOR_peak_1087	chr1	16825271	16825529	+	4.30319	NA	Intergenic	CpG	-6204	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	ciliary rootlet coiled-coil, rootletin pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_73196	chr3	190232444	190232623	+	4.30191	NA	intron (NM_001167929, intron 1 of 10)	intron (NM_001167929, intron 1 of 10)	693	NM_001167931	3556	Hs.478673	NM_002182	HPRD:04021	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
19-PTNLD28-TUMOR_peak_59802	chr20	10844364	10844487	+	4.30135	NA	Intergenic	MIR|SINE|MIR	45495	NR_109866	101929413	Hs.385604	NR_109866	ENSG00000232900	LOC101929413	-	uncharacterized LOC101929413	ncRNA
19-PTNLD28-TUMOR_peak_43292	chr17	72195896	72196018	+	4.30135	NA	Intergenic	Intergenic	-3838	NM_000999	6169	Hs.380953	NM_000999	HPRD:16048	RPL38	L38	ribosomal protein L38	protein-coding
19-PTNLD28-TUMOR_peak_39633	chr17	1552518	1552695	+	4.29466	NA	intron (NM_031430, intron 2 of 7)	CpG-9942	786	NM_031430	83547	Hs.534497	NM_031430	HPRD:09706	RILP	-	Rab interacting lysosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_35811	chr16	2518404	2518562	+	4.29466	NA	Intergenic	CpG	-3017	NM_006181	4917	Hs.158336	NM_006181	HPRD:03827	NTN3	NTN2L	netrin 3	protein-coding
19-PTNLD28-TUMOR_peak_70379	chr3	124860850	124860966	+	4.29402	NA	intron (NM_024628, intron 5 of 13)	CpG	9488	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_65629	chr22	40881464	40881656	+	4.29402	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-22116	NM_001282660	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_30834	chr14	65696741	65696839	+	4.29402	NA	Intergenic	Intergenic	-7725	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
19-PTNLD28-TUMOR_peak_45616	chr18	45982545	45982750	+	4.29402	NA	Intergenic	Intergenic	-82780	NM_014772	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_35731	chr16	1662409	1662521	+	4.29174	NA	promoter-TSS (NM_014714)	promoter-TSS (NM_014714)	-356	NM_014714	9742	Hs.389438	NM_014714	HPRD:11093	IFT140	MZSDS|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
19-PTNLD28-TUMOR_peak_93342	chr7	74268616	74268730	+	4.29174	NA	promoter-TSS (NM_001281447)	promoter-TSS (NM_001281447)	-801	NM_001281447	84163	Hs.647017	NM_173537	HPRD:16402	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_25181	chr12	69293307	69293447	+	4.28972	NA	intron (NM_001005502, intron 2 of 8)	intron (NM_001005502, intron 2 of 8)	33602	NM_001005502	1368	Hs.654387	NM_001874	HPRD:00273	CPM	-	carboxypeptidase M	protein-coding
19-PTNLD28-TUMOR_peak_68860	chr3	66822393	66822481	+	4.28972	NA	Intergenic	L1P3|LINE|L1	-226290	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_64952	chr22	28902123	28902303	+	4.28972	NA	intron (NM_001145418, intron 2 of 22)	L1PA11|LINE|L1	46356	NR_106713	102466081		NR_106713		MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
19-PTNLD28-TUMOR_peak_99630	chr8	98607658	98607746	+	4.28972	NA	Intergenic	L1PA3|LINE|L1	-48705	NM_178812	92140	Hs.377155	NM_178812	HPRD:17459	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
19-PTNLD28-TUMOR_peak_93786	chr7	86835862	86835950	+	4.28972	NA	intron (NM_024315, intron 1 of 3)	MER44B|DNA|TcMar-Tigger	13125	NM_024315	79161	Hs.619593	NM_024315	HPRD:12911	TMEM243	C7orf23|MM-TRAG	transmembrane protein 243, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_28810	chr13	99414089	99414187	+	4.28972	NA	Intergenic	HERV3-int|LTR|ERV1	-9209	NM_005073	6564	Hs.436893	NM_005073	HPRD:02768	SLC15A1	HPECT1|HPEPT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_33448	chr15	45750269	45750357	+	4.28972	NA	Intergenic	Intergenic	25065	NR_030599	100126311		NR_030599	miRBase:MI0005544	MIR147B	MIRN147B	microRNA 147b	ncRNA
19-PTNLD28-TUMOR_peak_108336	chrX	51075833	51075921	+	4.28972	NA	exon (NM_153183, exon 2 of 3)	exon (NM_153183, exon 2 of 3)	794	NM_153183	170685	Hs.375178	NM_153183	HPRD:17651	NUDT10	APS2|DIPP3a|hDIPP3alpha	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding
19-PTNLD28-TUMOR_peak_80240	chr5	63476965	63477053	+	4.28972	NA	intron (NM_001113561, intron 1 of 7)	MLT2A2|LTR|ERVL	15338	NM_178532	285671	Hs.657843	NM_178532	HPRD:15263	RNF180	-	ring finger protein 180	protein-coding
19-PTNLD28-TUMOR_peak_79696	chr5	42908823	42908933	+	4.28972	NA	Intergenic	Intergenic	84557	NR_104643	643977	Hs.535791	NR_104643		FLJ32255	-	uncharacterized LOC643977	ncRNA
19-PTNLD28-TUMOR_peak_68721	chr3	63264861	63264949	+	4.28972	NA	intron (NM_001130003, intron 2 of 5)	intron (NM_001130003, intron 2 of 5)	991	NM_001130003	132204	Hs.648668	NM_144642	HPRD:15458	SYNPR	SPO	synaptoporin	protein-coding
19-PTNLD28-TUMOR_peak_15546	chr10	109873833	109873939	+	4.28972	NA	Intergenic	L1PA2|LINE|L1	-44835	NR_125760	103695365	Hs.648991	NR_125760		LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
19-PTNLD28-TUMOR_peak_40637	chr17	21011326	21011462	+	4.28972	NA	Intergenic	LTR13|LTR|ERVK	-18847	NM_015510	25979	Hs.386989	NM_015510	HPRD:13215	DHRS7B	SDR32C1	dehydrogenase/reductase (SDR family) member 7B	protein-coding
19-PTNLD28-TUMOR_peak_82667	chr5	140262195	140262370	+	4.28972	NA	exon (NM_031865, exon 1 of 1)	exon (NM_031865, exon 1 of 1)	428	NM_018904	56136	Hs.199343	NM_018904	HPRD:07554	PCDHA13	CNR5|CNRN5|CNRS5|CRNR5|PCDH-ALPHA13	protocadherin alpha 13	protein-coding
19-PTNLD28-TUMOR_peak_109035	chrX	103357495	103357583	+	4.28972	NA	non-coding (NR_026694, exon 1 of 4)	non-coding (NR_026694, exon 1 of 4)	322	NM_001143978	644353	Hs.648338	NM_001143978		ZCCHC18	PNMA7B|SIZN2	zinc finger, CCHC domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_78101	chr4	175624357	175624458	+	4.28972	NA	intron (NM_001042543, intron 5 of 8)	intron (NM_001042543, intron 5 of 8)	126059	NM_001042543	8001	Hs.413099	NM_006529	HPRD:02688	GLRA3	-	glycine receptor, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_94756	chr7	106718958	106719046	+	4.28972	NA	intron (NM_002736, intron 2 of 10)	intron (NM_002736, intron 2 of 10)	33824	NM_002736	5577	Hs.433068	NM_002736	HPRD:01486	PRKAR2B	PRKAR2|RII-BETA	protein kinase, cAMP-dependent, regulatory, type II, beta	protein-coding
19-PTNLD28-TUMOR_peak_83127	chr5	149044315	149044472	+	4.28972	NA	Intergenic	Intergenic	-65422	NM_001172698	133522	Hs.483816	NM_133263	HPRD:10594	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	protein-coding
19-PTNLD28-TUMOR_peak_4587	chr1	85240684	85240900	+	4.28782	NA	Intergenic	Intergenic	-84552	NM_014021	117178	Hs.22587	NM_014021	HPRD:10566	SSX2IP	ADIP	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_68536	chr3	57261295	57261394	+	4.28782	NA	promoter-TSS (NM_012096)	promoter-TSS (NM_012096)	-421	NM_012096	26060	Hs.476415	NM_012096	HPRD:05053	APPL1	APPL|DIP13alpha	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding
19-PTNLD28-TUMOR_peak_70387	chr3	124931131	124931593	+	4.28782	NA	intron (NM_024628, intron 1 of 13)	CpG	247	NM_024628	84561	Hs.658514	NM_024628	HPRD:11563	SLC12A8	CCC9	solute carrier family 12, member 8	protein-coding
19-PTNLD28-TUMOR_peak_74502	chr4	10458773	10458861	+	4.28523	NA	intron (NM_053042, intron 1 of 2)	CpG	215	NM_053042	85460	Hs.455089	NM_053042	HPRD:13889	ZNF518B	-	zinc finger protein 518B	protein-coding
19-PTNLD28-TUMOR_peak_73253	chr3	192125864	192126015	+	4.28149	NA	exon (NM_021032, exon 1 of 5)	exon (NM_021032, exon 1 of 5)	899	NM_021032	2257	Hs.390250	NM_004113	HPRD:03303	FGF12	FGF12B|FHF1	fibroblast growth factor 12	protein-coding
19-PTNLD28-TUMOR_peak_18071	chr11	35643796	35643901	+	4.28149	NA	Intergenic	Intergenic	4113	NM_014344	24147	Hs.39384	NM_014344	HPRD:16897	FJX1	-	four jointed box 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_47259	chr19	10877401	10877526	+	4.28103	NA	intron (NM_001005361, intron 2 of 20)	intron (NM_001005361, intron 2 of 20)	-13467	NR_039903	100616425		NR_039903		MIR4748	-	microRNA 4748	ncRNA
19-PTNLD28-TUMOR_peak_105053	chr9	104248327	104248418	+	4.28103	NA	intron (NM_032342, intron 1 of 1)	CpG	1103	NM_032342	84302	Hs.655738	NM_032342		TMEM246	C9orf125	transmembrane protein 246	protein-coding
19-PTNLD28-TUMOR_peak_55947	chr2	136874462	136874623	+	4.28103	NA	promoter-TSS (NM_001008540)	promoter-TSS (NM_001008540)	-729	NM_001008540	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_39526	chr16	90074667	90074762	+	4.28103	NA	intron (NM_001288709, intron 3 of 3)	intron (NM_001288709, intron 3 of 3)	1815	NM_024043	79007	Hs.301394	NM_024043	HPRD:08327	DBNDD1	-	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_57807	chr2	202084153	202084399	+	4.27861	NA	3' UTR (NM_032976, exon 9 of 9)	3' UTR (NM_032976, exon 9 of 9)	-13890	NM_033355	841	Hs.599762	NM_001228	HPRD:03459	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_54660	chr2	105946162	105946250	+	4.27616	NA	promoter-TSS (NM_001142621)	promoter-TSS (NM_001142621)	-35	NM_004257	9392	Hs.446350	NM_004257	HPRD:06948	TGFBRAP1	TRAP-1|TRAP1	transforming growth factor, beta receptor associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_76214	chr4	89241400	89241599	+	4.27616	NA	Intergenic	Intergenic	-35516	NM_152542	152926	Hs.43744	NM_152542	HPRD:15167	PPM1K	BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent, 1K	protein-coding
19-PTNLD28-TUMOR_peak_68625	chr3	58615905	58615993	+	4.27616	NA	Intergenic	Intergenic	-2612	NM_001282714	11170	Hs.506357	NM_007177	HPRD:09753	FAM107A	DRR1|TU3A	family with sequence similarity 107, member A	protein-coding
19-PTNLD28-TUMOR_peak_107501	chrX	9431393	9431499	+	4.27616	NA	5' UTR (NM_001139467, exon 1 of 17)	5' UTR (NM_001139467, exon 1 of 17)	111	NM_001139467	6907	Hs.495656	NM_005647	HPRD:02183	TBL1X	EBI|SMAP55|TBL1	transducin (beta)-like 1X-linked	protein-coding
19-PTNLD28-TUMOR_peak_88618	chr6	86575791	86575893	+	4.27616	NA	Intergenic	HERV3-int|LTR|ERV1	-187391	NR_003038	387066	Hs.292457	NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2	small nucleolar RNA host gene 5 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_47871	chr19	17250211	17250372	+	4.27022	NA	intron (NM_001130065, intron 2 of 39)	AluJb|SINE|Alu	63700	NM_004145	4650	Hs.123198	NM_004145	HPRD:03677	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
19-PTNLD28-TUMOR_peak_84423	chr5	178017377	178017595	+	4.26993	NA	promoter-TSS (NM_173465)	promoter-TSS (NM_173465)	70	NM_173465	91522	Hs.660026	NM_173465	HPRD:16733	COL23A1	-	collagen, type XXIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_37489	chr16	33401540	33401628	+	4.26993	NA	Intergenic	Intergenic	-102882	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_49035	chr19	40404222	40404381	+	4.26884	NA	intron (NM_003890, intron 10 of 35)	LTR41|LTR|ERVL	36232	NM_003890	8857	Hs.111732	NM_003890	HPRD:10956	FCGBP	FC(GAMMA)BP	Fc fragment of IgG binding protein	protein-coding
19-PTNLD28-TUMOR_peak_53766	chr2	85440739	85440827	+	4.26884	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	80200	NM_031283	83439	Hs.516297	NM_031283	HPRD:06874	TCF7L1	TCF-3|TCF3	transcription factor 7-like 1 (T-cell specific, HMG-box)	protein-coding
19-PTNLD28-TUMOR_peak_67211	chr3	24563245	24563342	+	4.26884	NA	promoter-TSS (NR_039955)	promoter-TSS (NR_039955)	-367	NR_039955	100616448		NR_039955	miRBase:MI0017439	MIR4792	miR-4792	microRNA 4792	ncRNA
19-PTNLD28-TUMOR_peak_97450	chr8	19979828	19979937	+	4.26884	NA	Intergenic	AluSx1|SINE|Alu	60835	NM_001142325	6570	Hs.158322	NM_003053	HPRD:01897	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 (vesicular monoamine transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_50985	chr2	9563963	9564055	+	4.26230	NA	promoter-TSS (NM_004763)	promoter-TSS (NM_004763)	343	NM_016207	51692	Hs.515972	NM_016207	HPRD:05825	CPSF3	CPSF-73|CPSF73	cleavage and polyadenylation specific factor 3, 73kDa	protein-coding
19-PTNLD28-TUMOR_peak_96347	chr7	150822651	150822809	+	4.26048	NA	intron (NM_031946, intron 9 of 17)	CpG	38931	NM_001042535	116988	Hs.647075	NM_031946	HPRD:16707	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
19-PTNLD28-TUMOR_peak_47381	chr19	12035151	12035245	+	4.26040	NA	promoter-TSS (NM_001271848)	promoter-TSS (NM_001271848)	-685	NM_001271848	90592	Hs.528486	NM_144566	HPRD:10903	ZNF700	-	zinc finger protein 700	protein-coding
19-PTNLD28-TUMOR_peak_19585	chr11	68110114	68110238	+	4.25883	NA	intron (NM_001291902, intron 1 of 22)	intron (NM_001291902, intron 1 of 22)	30099	NM_002335	4041	Hs.6347	NM_002335	HPRD:04616	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_21680	chr11	121229557	121229708	+	4.25883	NA	Intergenic	Intergenic	66055	NM_001024956	6309	Hs.287749	NM_006918		SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
19-PTNLD28-TUMOR_peak_31168	chr14	72178537	72178658	+	4.25436	NA	intron (NM_001284246, intron 14 of 20)	intron (NM_001284246, intron 14 of 20)	124309	NM_001284247	26037	Hs.654657	NM_015556	HPRD:11559	SIPA1L1	E6TP1	signal-induced proliferation-associated 1 like 1	protein-coding
19-PTNLD28-TUMOR_peak_70043	chr3	119281436	119281572	+	4.25436	NA	Intergenic	Intergenic	-3023	NM_005191	941	Hs.838	NM_005191	HPRD:00202	CD80	B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7	CD80 molecule	protein-coding
19-PTNLD28-TUMOR_peak_24770	chr12	57846795	57846883	+	4.25436	NA	TTS (NM_005538)	TTS (NM_005538)	-2257	NM_031479	83729	Hs.632713	NM_031479	HPRD:11047	INHBE	-	inhibin, beta E	protein-coding
19-PTNLD28-TUMOR_peak_88151	chr6	57171072	57171331	+	4.25436	NA	Intergenic	Intergenic	-8402	NM_001282488	5558	Hs.654580	NM_000947		PRIM2	PRIM2A|p58	primase, DNA, polypeptide 2 (58kDa)	protein-coding
19-PTNLD28-TUMOR_peak_21298	chr11	114211309	114211419	+	4.25436	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	39397	NR_120567	101928940	Hs.409846	NR_120567	ENSG00000256195	LOC101928940	-	uncharacterized LOC101928940	ncRNA
19-PTNLD28-TUMOR_peak_10091	chr1	219159035	219159169	+	4.25436	NA	Intergenic	Intergenic	188028	NR_038845	643723	Hs.519774	NR_038845		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_15669	chr10	113943750	113943880	+	4.25436	NA	promoter-TSS (NM_020918)	promoter-TSS (NM_020918)	-278	NM_020918	57678	Hs.42586	NM_020918	HPRD:03865	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_39548	chr17	31441	31529	+	4.25436	NA	promoter-TSS (NM_003585)	promoter-TSS (NM_003585)	-64	NM_003585	8447	Hs.551705	NM_003585		DOC2B	DOC2BL	double C2-like domains, beta	protein-coding
19-PTNLD28-TUMOR_peak_3489	chr1	52156459	52156632	+	4.25436	NA	intron (NM_148906, intron 2 of 22)	Tigger3b|DNA|TcMar-Tigger	-38941	NM_148904	114883	Hs.21938	NM_024586	HPRD:09479	OSBPL9	ORP-9|ORP9	oxysterol binding protein-like 9	protein-coding
19-PTNLD28-TUMOR_peak_10531	chr1	226951754	226951842	+	4.25436	NA	Intergenic	Intergenic	-24922	NM_002221	3707	Hs.528087	NM_002221	HPRD:00942	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
19-PTNLD28-TUMOR_peak_94978	chr7	120627792	120627880	+	4.25436	NA	promoter-TSS (NM_024913)	promoter-TSS (NM_024913)	-915	NM_024913	79974	Hs.189652	NM_024913	HPRD:08647	CPED1	C7orf58	cadherin-like and PC-esterase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38658	chr16	72661272	72661360	+	4.25436	NA	Intergenic	L1PA2|LINE|L1	420958	NM_006885	463	Hs.598297	NM_006885	HPRD:00075	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_97306	chr8	16801589	16801761	+	4.25436	NA	Intergenic	L1PA2|LINE|L1	57999	NM_019851	26281	Hs.199905	NM_019851		FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
19-PTNLD28-TUMOR_peak_26226	chr12	110256993	110257158	+	4.24670	NA	intron (NM_021625, intron 1 of 15)	intron (NM_021625, intron 1 of 15)	-4443	NM_147204	59341	Hs.506713	NM_021625	HPRD:05667	TRPV4	CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding
19-PTNLD28-TUMOR_peak_52141	chr2	37603967	37604101	+	4.24670	NA	Intergenic	Intergenic	32281	NM_012413	25797	Hs.79033	NM_012413	HPRD:06140	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
19-PTNLD28-TUMOR_peak_38508	chr16	69797021	69797109	+	4.24670	NA	intron (NM_001270454, intron 1 of 23)	intron (NM_001270454, intron 1 of 23)	878	NM_007014	11060	Hs.408458	NM_007014	HPRD:03812	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
19-PTNLD28-TUMOR_peak_28790	chr13	99131133	99131249	+	4.24670	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	43188	NM_003576	8428	Hs.508514	NM_003576	HPRD:10385	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
19-PTNLD28-TUMOR_peak_106262	chr9	131069622	131069712	+	4.24670	NA	Intergenic	AluJb|SINE|Alu	15030	NM_015679	26995	Hs.632685	NM_015679	HPRD:18230	TRUB2	CLONE24922	TruB pseudouridine (psi) synthase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_84202	chr5	175458284	175458465	+	4.24649	NA	Intergenic	Intergenic	30684	NR_103794	100996385	Hs.382347	NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
19-PTNLD28-TUMOR_peak_46915	chr19	6536254	6536369	+	4.24378	NA	TTS (NM_003811)	TTS (NM_003811)	5301	NM_003811	8744	Hs.1524	NM_003811	HPRD:05861	TNFSF9	4-1BB-L|CD137L	tumor necrosis factor (ligand) superfamily, member 9	protein-coding
19-PTNLD28-TUMOR_peak_78683	chr5	1555529	1555702	+	4.24378	NA	Intergenic	Intergenic	-31539	NM_024830	79888	Hs.368853	NM_024830	HPRD:08572	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_21372	chr11	116335964	116336119	+	4.24378	NA	Intergenic	Intergenic	307673	NM_032725	84811	Hs.437341	NM_032725	HPRD:11307	BUD13	Cwc26|fSAP71	BUD13 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_10893	chr1	232840390	232840513	+	4.24378	NA	Intergenic	Intergenic	38010	NR_110683	101927683	Hs.520568	NR_110683	ENSG00000236497	LOC101927683	-	uncharacterized LOC101927683	ncRNA
19-PTNLD28-TUMOR_peak_100980	chr8	131461186	131461275	+	4.24085	NA	Intergenic	Intergenic	-5324	NM_018482	50807	Hs.655552	NM_018482	HPRD:05809	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_107371	chrX	2316212	2316300	+	4.23704	NA	intron (NM_145177, intron 3 of 6)	intron (NM_145177, intron 3 of 6)	102324	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_36854	chr16	23607047	23607298	+	4.23704	NA	intron (NM_005003, intron 1 of 4)	MIRb|SINE|MIR	467	NM_005003	4706	Hs.189716	NM_005003	HPRD:11951	NDUFAB1	ACP|FASN2A|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa	protein-coding
19-PTNLD28-TUMOR_peak_85020	chr6	5033518	5033610	+	4.23704	NA	Intergenic	MIRc|SINE|MIR	-29267	NM_001286132	10799	Hs.511756	NM_006638	HPRD:09361	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_82400	chr5	136899116	136899526	+	4.23704	NA	Intergenic	Intergenic	-64303	NM_004598	6695	Hs.596136	NM_004598	HPRD:11887	SPOCK1	SPOCK|TESTICAN|TIC1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	protein-coding
19-PTNLD28-TUMOR_peak_25461	chr12	81474361	81474449	+	4.23704	NA	intron (NM_024560, intron 1 of 15)	intron (NM_024560, intron 1 of 15)	2596	NM_024560	79611	Hs.259559	NM_024560	HPRD:13385	ACSS3	-	acyl-CoA synthetase short-chain family member 3	protein-coding
19-PTNLD28-TUMOR_peak_9112	chr1	200008705	200008935	+	4.23704	NA	exon (NM_205860, exon 2 of 8)	exon (NM_205860, exon 2 of 8)	-3133	NM_001276464	2494	Hs.33446	NM_003822	HPRD:06830	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5, group A, member 2	protein-coding
19-PTNLD28-TUMOR_peak_1936	chr1	30159267	30159396	+	4.23704	NA	Intergenic	Intergenic	351128	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_54176	chr2	95522767	95522865	+	4.23704	NA	promoter-TSS (NR_003366)	promoter-TSS (NR_003366)	4	NR_003366	729171	Hs.456852	NR_003366		ANKRD20A8P	ANKRD20B	ankyrin repeat domain 20 family, member A8, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_110107	chrY	2266212	2266300	+	4.23704	NA	intron (NM_145177, intron 3 of 6).2	intron (NM_145177, intron 3 of 6).2	102324	NM_001171135	9189	Hs.131452	NM_004729	HPRD:02170	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger, BED-type containing 1	protein-coding
19-PTNLD28-TUMOR_peak_94528	chr7	102184957	102185063	+	4.23602	NA	intron (NM_001097615, intron 4 of 8)	intron (NM_001097615, intron 4 of 8)	-6669	NM_001031618	441273	Hs.656428	NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
19-PTNLD28-TUMOR_peak_99974	chr8	106330886	106331051	+	4.23474	NA	promoter-TSS (NM_012082)	promoter-TSS (NM_012082)	-179	NM_012082	23414	Hs.431009	NM_012082	HPRD:04737	ZFPM2	DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
19-PTNLD28-TUMOR_peak_79490	chr5	36241097	36241213	+	4.23314	NA	intron (NM_001287341, intron 1 of 12)	CpG	338	NM_001287340	133686	Hs.81907	NM_153013	HPRD:08088	NADK2	C5orf33|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_13777	chr10	61670351	61670439	+	4.23304	NA	Intergenic	Intergenic	-3981	NM_005436	8030	Hs.591360	NM_005436	HPRD:09064	CCDC6	D10S170|H4|PTC|TPC|TST1	coiled-coil domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_86108	chr6	26205543	26205726	+	4.23304	NA	TTS (NM_003545)	TTS (NM_003545)	761	NM_003545	8367	Hs.662174	NM_003545		HIST1H4E	H4/j|H4FJ	histone cluster 1, H4e	protein-coding
19-PTNLD28-TUMOR_peak_106473	chr9	134153547	134153637	+	4.21912	NA	Intergenic	Intergenic	-1686	NM_033387	286336	Hs.143878	NM_033387	HPRD:12968	FAM78A	C9orf59	family with sequence similarity 78, member A	protein-coding
19-PTNLD28-TUMOR_peak_12222	chr10	17495413	17495618	+	4.21912	NA	intron (NM_001004470, intron 2 of 7)	CpG	739	NM_001004470	338596	Hs.677766	NM_001004470		ST8SIA6	SIA8F|SIAT8F|ST8SIA-VI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
19-PTNLD28-TUMOR_peak_28980	chr13	107519831	107519919	+	4.21912	NA	Intergenic	Intergenic	213647	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_31553	chr14	84638365	84638454	+	4.21912	NA	Intergenic	Intergenic	-1221814	NR_102737	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_77067	chr4	129784694	129784843	+	4.21912	NA	3' UTR (NM_024900, exon 9 of 9)	3' UTR (NM_024900, exon 9 of 9)	51769	NM_001287443	79960	Hs.12420	NM_024900	HPRD:10151	JADE1	PHF17	jade family PHD finger 1	protein-coding
19-PTNLD28-TUMOR_peak_19051	chr11	62845899	62846007	+	4.21912	NA	Intergenic	L1PA3|LINE|L1	-62636	NM_001184736	9376	Hs.266223	NM_004254	ENSG00000149452	SLC22A8	OAT3	solute carrier family 22 (organic anion transporter), member 8	protein-coding
19-PTNLD28-TUMOR_peak_61717	chr20	48350314	48350472	+	4.21912	NA	Intergenic	LTR24C|LTR|ERV1	-19972	NM_004776	9334	Hs.370487	NM_004776	HPRD:06807	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_41357	chr17	38296957	38297092	+	4.21871	NA	exon (NM_007359, exon 1 of 14)	exon (NM_007359, exon 1 of 14)	517	NM_007359	22794	Hs.743287	NM_007359	HPRD:16225	CASC3	BTZ|MLN51	cancer susceptibility candidate 3	protein-coding
19-PTNLD28-TUMOR_peak_59515	chr20	2645196	2645284	+	4.21871	NA	promoter-TSS (NM_001258384)	promoter-TSS (NM_001258384)	-375	NM_006899	3420	Hs.436405	NM_006899	HPRD:05163	IDH3B	H-IDHB|RP46	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding
19-PTNLD28-TUMOR_peak_98470	chr8	42286191	42286281	+	4.21871	NA	intron (NM_001257180, intron 10 of 10)	intron (NM_001257180, intron 10 of 10)	36957	NM_001135694	7419	Hs.699301	NM_005662	HPRD:06750	VDAC3	HD-VDAC3|VDAC-3	voltage-dependent anion channel 3	protein-coding
19-PTNLD28-TUMOR_peak_87360	chr6	40693507	40693687	+	4.21871	NA	Intergenic	Intergenic	-138471	NM_020737	57497	Hs.250015	NM_020737	HPRD:17444	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_102969	chr9	37034324	37034480	+	4.21871	NA	promoter-TSS (NM_001280548)	promoter-TSS (NM_001280548)	74	NM_001280548	5079	Hs.654464	NM_016734	HPRD:01334	PAX5	ALL3|BSAP	paired box 5	protein-coding
19-PTNLD28-TUMOR_peak_105477	chr9	115527302	115527410	+	4.21871	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	14222	NM_001012994	401548	Hs.522350	NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
19-PTNLD28-TUMOR_peak_2124	chr1	32712574	32712736	+	4.21871	NA	promoter-TSS (NM_032648)	promoter-TSS (NM_032648)	-163	NM_032648	84734	Hs.18449	NM_032648	HPRD:14401	FAM167B	C1orf90	family with sequence similarity 167, member B	protein-coding
19-PTNLD28-TUMOR_peak_57765	chr2	201601533	201601629	+	4.21776	NA	intron (NR_001557, intron 5 of 30)	intron (NR_001557, intron 5 of 30)	-1681	NR_037886	100507140	Hs.382116	NR_037886	ENSG00000237166	LOC100507140	-	uncharacterized LOC100507140	ncRNA
19-PTNLD28-TUMOR_peak_61430	chr20	44985782	44986069	+	4.21776	NA	intron (NM_001281458, intron 4 of 10)	L2c|LINE|L2	7172	NM_015945	51006	Hs.593344	NM_015945	HPRD:15371	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 (GDP-fucose transporter), member C2	protein-coding
19-PTNLD28-TUMOR_peak_67741	chr3	42839883	42839971	+	4.21776	NA	intron (NM_001099669, intron 1 of 3)	SVA_F|Other|Other	6007	NM_001099668	25994	Hs.593134	NM_014056		HIGD1A	HIG1|RCF1a	HIG1 hypoxia inducible domain family, member 1A	protein-coding
19-PTNLD28-TUMOR_peak_51896	chr2	29532740	29532833	+	4.21776	NA	intron (NM_004304, intron 8 of 28)	intron (NM_004304, intron 8 of 28)	194494	NM_024692	79745	Hs.122927	NM_024692	HPRD:08634	CLIP4	RSNL2	CAP-GLY domain containing linker protein family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_45991	chr18	56940630	56940803	+	4.21776	NA	promoter-TSS (NM_013435)	promoter-TSS (NM_013435)	-91	NM_013435	30062	Hs.278957	NM_013435	HPRD:03530	RAX	MCOP3|RX	retina and anterior neural fold homeobox	protein-coding
19-PTNLD28-TUMOR_peak_67991	chr3	47619361	47619449	+	4.21776	NA	exon (NM_001206943, exon 2 of 5)	exon (NM_001206943, exon 2 of 5)	954	NM_001206944	10675	Hs.45127	NM_006574		CSPG5	NGC	chondroitin sulfate proteoglycan 5 (neuroglycan C)	protein-coding
19-PTNLD28-TUMOR_peak_105721	chr9	119600352	119600502	+	4.21776	NA	intron (NM_014010, intron 10 of 21)	AluSx|SINE|Alu	150846	NM_012210	22954	Hs.591910	NM_012210	HPRD:03797	TRIM32	BBS11|HT2A|LGMD2H|TATIP	tripartite motif containing 32	protein-coding
19-PTNLD28-TUMOR_peak_107595	chrX	13707135	13707314	+	4.21740	NA	promoter-TSS (NM_001195328)	promoter-TSS (NM_001195328)	-16	NM_001195328	9367	Hs.495704	NM_004251		RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_88525	chr6	83074997	83075108	+	4.21740	NA	exon (NM_001166392, exon 2 of 2)	exon (NM_001166392, exon 2 of 2)	1091	NM_001166392	7162	Hs.82128	NM_006670	HPRD:01837	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
19-PTNLD28-TUMOR_peak_44643	chr18	12283430	12283530	+	4.21561	NA	Intergenic	Intergenic	-24777	NM_032525	84617	Hs.193491	NM_032525	HPRD:11349	TUBB6	HsT1601|TUBB-5	tubulin, beta 6 class V	protein-coding
19-PTNLD28-TUMOR_peak_71978	chr3	157504614	157504702	+	4.21542	NA	Intergenic	Intergenic	243525	NM_001130002	152078	Hs.259046	NM_001099777	ENSG00000174899	C3orf55	-	chromosome 3 open reading frame 55	protein-coding
19-PTNLD28-TUMOR_peak_81200	chr5	94620403	94620726	+	4.21542	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	-285	NM_024717	79772	Hs.591248	NM_024717	HPRD:08652	MCTP1	-	multiple C2 domains, transmembrane 1	protein-coding
19-PTNLD28-TUMOR_peak_82457	chr5	137840717	137840810	+	4.21542	NA	Intergenic	Intergenic	36637	NM_001282185	2107	Hs.483494	NM_004730	HPRD:02616	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
19-PTNLD28-TUMOR_peak_4777	chr1	90098226	90098352	+	4.21542	NA	promoter-TSS (NM_032270)	promoter-TSS (NM_032270)	164	NR_033981	400761	Hs.741594	NR_033981	ENSG00000231999	FLJ27354	-	uncharacterized LOC400761	ncRNA
19-PTNLD28-TUMOR_peak_19119	chr11	64002292	64002399	+	4.21145	NA	TTS (NM_005528)	TTS (NM_005528)	289	NM_001243733	7423	Hs.732095	NM_003377		VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
19-PTNLD28-TUMOR_peak_9318	chr1	202168317	202168411	+	4.21145	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	-4541	NM_021636	59352	Hs.497402	NM_021636	HPRD:05974	LGR6	GPCR|VTS20631	leucine-rich repeat containing G protein-coupled receptor 6	protein-coding
19-PTNLD28-TUMOR_peak_73851	chr4	1685463	1685572	+	4.20585	NA	5' UTR (NM_001297435, exon 1 of 6)	5' UTR (NM_001297435, exon 1 of 6)	201	NM_001013622	152877	Hs.143314	NM_001013622	HPRD:12900	FAM53A	DNTNP	family with sequence similarity 53, member A	protein-coding
19-PTNLD28-TUMOR_peak_7180	chr1	155177963	155178110	+	4.20579	NA	promoter-TSS (NM_001252607)	promoter-TSS (NM_001252607)	-264	NM_001252607	7059	Hs.169875	NM_007112	HPRD:01767	THBS3	TSP3	thrombospondin 3	protein-coding
19-PTNLD28-TUMOR_peak_58320	chr2	217556930	217557052	+	4.20345	NA	intron (NM_000599, intron 1 of 3)	CpG	3281	NM_000599	3488	Hs.607212	NM_000599	HPRD:00901	IGFBP5	IBP5	insulin-like growth factor binding protein 5	protein-coding
19-PTNLD28-TUMOR_peak_16460	chr11	319161	319464	+	4.19913	NA	TTS (NM_021034)	TTS (NM_021034)	1602	NR_049759	10410	Hs.374650	NM_021034	HPRD:05719	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_35273	chr15	92409495	92409696	+	4.19825	NA	intron (NM_013272, intron 1 of 9)	intron (NM_013272, intron 1 of 9)	12657	NM_013272	28232	Hs.311187	NM_013272	HPRD:07502	SLCO3A1	OATP-D|OATP3A1|OATPD|SLC21A11	solute carrier organic anion transporter family, member 3A1	protein-coding
19-PTNLD28-TUMOR_peak_41179	chr17	35848212	35848321	+	4.19825	NA	Intergenic	Intergenic	-1685	NM_007026	11072	Hs.91448	NM_007026	HPRD:09427	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
19-PTNLD28-TUMOR_peak_85173	chr6	7543340	7543525	+	4.19640	NA	intron (NM_001008844, intron 1 of 23)	CpG	1562	NM_004415	1832	Hs.519873	NM_004415	HPRD:00513	DSP	DP|DPI|DPII	desmoplakin	protein-coding
19-PTNLD28-TUMOR_peak_102022	chr9	4298192	4298508	+	4.19640	NA	intron (NM_001042413, intron 1 of 10)	CpG	1685	NM_001042413	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_59202	chr2	240610236	240610402	+	4.19370	NA	Intergenic	L1M5|LINE|L1	-74235	NR_037808	150935	Hs.555582	NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19-PTNLD28-TUMOR_peak_46823	chr19	4867653	4867741	+	4.19370	NA	promoter-TSS (NM_001164194)	promoter-TSS (NM_001164194)	83	NM_001164194	10226	Hs.140452	NM_005817	HPRD:04080	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
19-PTNLD28-TUMOR_peak_8004	chr1	167759520	167759657	+	4.19370	NA	3' UTR (NM_003953, exon 6 of 6)	3' UTR (NM_003953, exon 6 of 6)	68401	NM_001146191	9019	Hs.493919	NM_003953	HPRD:05086	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero-like 1	protein-coding
19-PTNLD28-TUMOR_peak_90022	chr6	151178518	151178606	+	4.19335	NA	Intergenic	LTR10E|LTR|ERV1	-8253	NM_001242769	25902	Hs.591343	NM_015440	HPRD:09967	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
19-PTNLD28-TUMOR_peak_65490	chr22	38658251	38658358	+	4.18859	NA	intron (NM_012264, intron 1 of 8)	L1ME3|LINE|L1	10366	NM_001195071	25829	Hs.182626	NM_012264	HPRD:12801	TMEM184B	C22orf5|FM08|HS5O6A	transmembrane protein 184B	protein-coding
19-PTNLD28-TUMOR_peak_34067	chr15	66585903	66586069	+	4.18859	NA	promoter-TSS (NM_001143688)	promoter-TSS (NM_001143688)	66	NM_001143688	115752	Hs.446251	NM_133375	HPRD:11355	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
19-PTNLD28-TUMOR_peak_41813	chr17	43398414	43398590	+	4.18486	NA	Intergenic	Intergenic	-4072	NM_003954	9020	Hs.404183	NM_003954		MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
19-PTNLD28-TUMOR_peak_12019	chr10	11891370	11891489	+	4.18472	NA	TTS (NR_038222)	TTS (NR_038222)	26032	NM_153256	254427	Hs.435775	NM_153256	HPRD:10697	PROSER2	C10orf47	proline and serine rich 2	protein-coding
19-PTNLD28-TUMOR_peak_85039	chr6	5361750	5361866	+	4.18472	NA	intron (NM_006567, intron 1 of 6)	intron (NM_006567, intron 1 of 6)	100224	NM_006567	10667	Hs.484547	NM_006567	HPRD:09946	FARS2	COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
19-PTNLD28-TUMOR_peak_20005	chr11	74178194	74178282	+	4.18472	NA	intron (NM_005472, intron 1 of 2)	CpG	362	NM_005472	10008	Hs.523899	NM_005472	HPRD:07256	KCNE3	HOKPP|HYPP|MiRP2	potassium voltage-gated channel, Isk-related family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_71530	chr3	146582851	146583106	+	4.18472	NA	Intergenic	Intergenic	-258975	NM_001085420	389158	Hs.254692	NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_97107	chr8	10192421	10192707	+	4.18472	NA	intron (NM_001199729, intron 6 of 6)	CpG	-139511	NR_120604	101929191	Hs.595262	NR_120604		LINCR-0001	-	uncharacterized LINCR-0001	ncRNA
19-PTNLD28-TUMOR_peak_84110	chr5	173382318	173382475	+	4.18472	NA	intron (NM_030627, intron 9 of 9)	intron (NM_030627, intron 9 of 9)	-33766	NM_001144954	133491	Hs.131469	NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
19-PTNLD28-TUMOR_peak_15426	chr10	105413684	105413849	+	4.18472	NA	intron (NM_014631, intron 8 of 13)	L2c|LINE|L2	-92771	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_26518	chr12	117578612	117578779	+	4.18472	NA	intron (NR_120464, intron 2 of 2)	MLT1J1-int|LTR|ERVL-MaLR	41423	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_93607	chr7	78870744	78870832	+	4.18472	NA	intron (NM_001301128, intron 1 of 20)	LTR8A|LTR|ERV1	-211485	NR_038346	100505881	Hs.31474	NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
19-PTNLD28-TUMOR_peak_69598	chr3	107677115	107677247	+	4.18438	NA	Intergenic	Intergenic	75129	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
19-PTNLD28-TUMOR_peak_84462	chr5	178771650	178771745	+	4.18438	NA	intron (NM_021599, intron 1 of 10)	CpG-21527	734	NM_021599	9509	Hs.23871	NM_014244	HPRD:05173	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif, 2	protein-coding
19-PTNLD28-TUMOR_peak_86323	chr6	28511556	28511658	+	4.18438	NA	Intergenic	Intergenic	17818	NM_003996	2880	Hs.248129	NM_001509	HPRD:11941	GPX5	HEL-S-75p	glutathione peroxidase 5 (epididymal androgen-related protein)	protein-coding
19-PTNLD28-TUMOR_peak_34491	chr15	74715851	74716031	+	4.18438	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	10060	NM_001146030	8482	Hs.24640	NM_003612	HPRD:07081	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL	semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)	protein-coding
19-PTNLD28-TUMOR_peak_15335	chr10	104155406	104155496	+	4.18391	NA	promoter-TSS (NM_001261403)	promoter-TSS (NM_001261403)	98	NM_001261403	4791	Hs.73090	NM_002502	HPRD:01239	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52	nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)	protein-coding
19-PTNLD28-TUMOR_peak_69272	chr3	88108612	88108753	+	4.18391	NA	promoter-TSS (NM_003663)	promoter-TSS (NM_003663)	-536	NM_003663	8545	Hs.444818	NM_003663	HPRD:04529	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_106330	chr9	131901595	131901721	+	4.18272	NA	intron (NM_001271832, intron 7 of 8)	intron (NM_001271832, intron 7 of 8)	27691	NM_001193397	5524	Hs.400740	NM_021131	HPRD:02858	PPP2R4	PP2A|PR53|PTPA	protein phosphatase 2A activator, regulatory subunit 4	protein-coding
19-PTNLD28-TUMOR_peak_36362	chr16	12674958	12675086	+	4.17169	NA	Intergenic	AluSx|SINE|Alu	-139156	NR_039869	100616195		NR_039869	miRBase:MI0017353	MIR4718	-	microRNA 4718	ncRNA
19-PTNLD28-TUMOR_peak_39918	chr17	6543601	6543714	+	4.17169	NA	promoter-TSS (NM_032731)	promoter-TSS (NM_032731)	-565	NM_032731	84817	Hs.408236	NM_032731	HPRD:11656	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
19-PTNLD28-TUMOR_peak_19294	chr11	65342544	65342680	+	4.17072	NA	promoter-TSS (NM_001099409)	promoter-TSS (NM_001099409)	-897	NM_001099409	254102	Hs.502867	NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_66397	chr3	8804623	8804754	+	4.16916	NA	intron (NM_000916, intron 3 of 3)	intron (NM_000916, intron 3 of 3)	6612	NM_000916	5021	Hs.2820	NM_000916	HPRD:01328	OXTR	OT-R	oxytocin receptor	protein-coding
19-PTNLD28-TUMOR_peak_72806	chr3	184354615	184354703	+	4.16916	NA	Intergenic	Intergenic	75072	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_58508	chr2	220325422	220325544	+	4.16916	NA	promoter-TSS (NM_001173476)	promoter-TSS (NM_001173476)	-51	NM_001173476	10290	Hs.21639	NM_005876	HPRD:10653	SPEG	APEG-1|APEG1|BPEG|SPEGalpha|SPEGbeta	SPEG complex locus	protein-coding
19-PTNLD28-TUMOR_peak_65627	chr22	40878100	40878215	+	4.16916	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-18713	NM_001282660	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_78233	chr4	184319594	184319682	+	4.16916	NA	Intergenic	CpG	-46151	NM_017632	55602	Hs.644077	NM_017632	HPRD:16683	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_101697	chr8	145023923	145024078	+	4.16763	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	1044	NM_201380	5339	Hs.434248	NM_000445	HPRD:03180	PLEC	EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
19-PTNLD28-TUMOR_peak_93661	chr7	80570831	80570924	+	4.16666	NA	Intergenic	Intergenic	-22210	NM_006379	10512	Hs.269109	NM_006379	HPRD:04034	SEMA3C	SEMAE|SemE	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
19-PTNLD28-TUMOR_peak_71660	chr3	149688815	149688975	+	4.16666	NA	promoter-TSS (NM_002628)	promoter-TSS (NM_002628)	-154	NM_053024	5217	Hs.91747	NM_002628	HPRD:01451	PFN2	D3S1319E|PFL	profilin 2	protein-coding
19-PTNLD28-TUMOR_peak_14622	chr10	82214389	82214477	+	4.16498	NA	intron (NM_030927, intron 1 of 8)	CpG	395	NM_001128309	81619	Hs.718943	NM_030927	HPRD:18196	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
19-PTNLD28-TUMOR_peak_49956	chr19	50879975	50880099	+	4.16498	NA	5' UTR (NM_007121, exon 2 of 10)	5' UTR (NM_007121, exon 2 of 10)	357	NM_001256647	7376	Hs.432976	NM_007121	HPRD:02660	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1, group H, member 2	protein-coding
19-PTNLD28-TUMOR_peak_87650	chr6	44015046	44015148	+	4.16498	NA	Intergenic	L2c|LINE|L2	46760	NM_153246	221416	Hs.531926	NM_153246	HPRD:14640	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
19-PTNLD28-TUMOR_peak_54541	chr2	101848942	101849030	+	4.16498	NA	Intergenic	Intergenic	-20359	NM_017546	55571	Hs.744080	NM_017546	HPRD:12812	CNOT11	C2orf29	CCR4-NOT transcription complex, subunit 11	protein-coding
19-PTNLD28-TUMOR_peak_19577	chr11	67981242	67981350	+	4.16498	NA	promoter-TSS (NM_016028)	promoter-TSS (NM_016028)	-57	NM_001300909	51111	Hs.632120	NM_016028	HPRD:11616	SUV420H1	CGI85|KMT5B	suppressor of variegation 4-20 homolog 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_37971	chr16	56640506	56640727	+	4.16498	NA	Intergenic	Intergenic	-1862	NM_005953	4502	Hs.534330	NM_005953		MT2A	MT2	metallothionein 2A	protein-coding
19-PTNLD28-TUMOR_peak_2020	chr1	31655022	31655143	+	4.16498	NA	intron (NM_024522, intron 5 of 6)	intron (NM_024522, intron 5 of 6)	57652	NM_024522	79570	Hs.470259	NM_024522	HPRD:07786	NKAIN1	FAM77C	Na+/K+ transporting ATPase interacting 1	protein-coding
19-PTNLD28-TUMOR_peak_93387	chr7	74898131	74898251	+	4.16498	NA	intron (NR_027776, intron 5 of 5)	intron (NR_027776, intron 5 of 5)	-30550	NR_002206	2970	Hs.654705	NR_002206		GTF2IP1	WBSCR7	general transcription factor IIi, pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_35976	chr16	4323544	4323763	+	4.16003	NA	promoter-TSS (NM_003223)	promoter-TSS (NM_003223)	-652	NM_003223	7023	Hs.513305	NM_003223	HPRD:11795	TFAP4	AP-4|bHLHc41	transcription factor AP-4 (activating enhancer binding protein 4)	protein-coding
19-PTNLD28-TUMOR_peak_102327	chr9	17134465	17134803	+	4.16003	NA	promoter-TSS (NM_001286985)	promoter-TSS (NM_001286985)	-355	NM_001286985	54875	Hs.435381	NM_017738	HPRD:10800	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein, centrosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_28125	chr13	46422010	46422315	+	4.16003	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	3684	NM_198849	283514	Hs.368483	NM_198849	HPRD:14145	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
19-PTNLD28-TUMOR_peak_1037	chr1	16316671	16316759	+	4.16003	NA	Intergenic	Intergenic	-14016	NM_178840	149563	Hs.29190	NM_178840		C1orf64	ERRF	chromosome 1 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_31563	chr14	85715696	85715818	+	4.16003	NA	Intergenic	Intergenic	-144466	NR_102737	100996280	Hs.135735	NR_102737	ENSG00000259107	LINC00911	-	long intergenic non-protein coding RNA 911	ncRNA
19-PTNLD28-TUMOR_peak_58885	chr2	233476309	233476507	+	4.16003	NA	intron (NM_001243252, intron 1 of 3)	intron (NM_001243252, intron 1 of 3)	5641	NM_001243252	80303	Hs.516769	NM_025202	HPRD:13265	EFHD1	MST133|MSTP133|SWS2	EF-hand domain family, member D1	protein-coding
19-PTNLD28-TUMOR_peak_63298	chr21	35720338	35720431	+	4.16003	NA	Intergenic	Intergenic	-15939	NM_172201	9992	Hs.551521	NM_172201		KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel, Isk-related family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_27483	chr13	24624953	24625113	+	4.16003	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	71268	NM_001286792	221178	Hs.434298	NM_153023	HPRD:15427	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
19-PTNLD28-TUMOR_peak_18308	chr11	45132294	45132382	+	4.16003	NA	intron (NR_046338, intron 2 of 7)	MER91B|DNA|hAT-Tip100	16774	NR_046338	56981	Hs.178715	NM_020229	HPRD:11456	PRDM11	PFM8	PR domain containing 11	protein-coding
19-PTNLD28-TUMOR_peak_34399	chr15	72963025	72963189	+	4.16003	NA	Intergenic	Intergenic	15383	NR_002780	123346	Hs.434111	NR_002780	ENSG00000175202	HIGD2B	HIGD2BP	HIG1 hypoxia inducible domain family, member 2B	pseudo
19-PTNLD28-TUMOR_peak_94203	chr7	98971780	98971906	+	4.15236	NA	promoter-TSS (NM_005720)	promoter-TSS (NM_005720)	-455	NM_005720	10095	Hs.489284	NM_005720	HPRD:10366	ARPC1B	ARC41|p40-ARC|p41-ARC	actin related protein 2/3 complex, subunit 1B, 41kDa	protein-coding
19-PTNLD28-TUMOR_peak_54897	chr2	111333994	111334400	+	4.15155	NA	intron (NM_005054, intron 1 of 22).3	CpG	481	NM_005054	84220	Hs.469630	NM_005054	HPRD:04128	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_71937	chr3	156852594	156852732	+	4.15155	NA	Intergenic	Intergenic	-11872	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
19-PTNLD28-TUMOR_peak_71828	chr3	153839745	153839906	+	4.15044	NA	promoter-TSS (NR_037901)	promoter-TSS (NR_037901)	676	NM_015595	26084	Hs.240845	NM_015595	HPRD:11554	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
19-PTNLD28-TUMOR_peak_96150	chr7	148272820	148272944	+	4.15044	NA	Intergenic	LTR16A2|LTR|ERVL	-14775	NM_145304	202865	Hs.352212	NM_145304	HPRD:12921	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_5005	chr1	94736452	94736593	+	4.15044	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-33215	NM_004815	9411	Hs.483238	NM_004815		ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
19-PTNLD28-TUMOR_peak_56994	chr2	173447797	173447938	+	4.15044	NA	intron (NR_103729, intron 8 of 11)	intron (NR_103729, intron 8 of 11)	27170	NM_002610	5163	Hs.470633	NM_002610		PDK1	-	pyruvate dehydrogenase kinase, isozyme 1	protein-coding
19-PTNLD28-TUMOR_peak_73721	chr4	107544	107746	+	4.15044	NA	intron (NR_110527, intron 3 of 4)	CpG	-16713	NR_110528	255403	Hs.636638	NM_001039127		ZNF718	-	zinc finger protein 718	protein-coding
19-PTNLD28-TUMOR_peak_82599	chr5	139561815	139561903	+	4.15044	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	7206	NM_032412	84418	Hs.529798	NM_032412		CYSTM1	C5orf32	cysteine-rich transmembrane module containing 1	protein-coding
19-PTNLD28-TUMOR_peak_25352	chr12	75873848	75874040	+	4.15044	NA	promoter-TSS (NM_006851)	promoter-TSS (NM_006851)	-569	NM_006851	11010	Hs.205558	NM_006851		GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis-related 1	protein-coding
19-PTNLD28-TUMOR_peak_57375	chr2	187434680	187434843	+	4.15044	NA	Intergenic	Intergenic	-20029	NM_002210	3685	Hs.436873	NM_002210	HPRD:01903	ITGAV	CD51|MSK8|VNRA|VTNR	integrin, alpha V	protein-coding
19-PTNLD28-TUMOR_peak_72346	chr3	171693459	171693564	+	4.15044	NA	Intergenic	L2c|LINE|L2	-63907	NM_022763	64778	Hs.744888	NM_022763	HPRD:10943	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_108247	chrX	48693554	48693645	+	4.15044	NA	intron (NM_013271, intron 1 of 2)	CpG	441	NM_013271	27344	Hs.522640	NM_013271	HPRD:02320	PCSK1N	PROSAAS|SAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_77517	chr4	149083797	149084004	+	4.15044	NA	intron (NM_000901, intron 4 of 8)	intron (NM_000901, intron 4 of 8)	279772	NM_000901	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_68862	chr3	66848740	66848871	+	4.15044	NA	Intergenic	Intergenic	-199922	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_60350	chr20	26273199	26273304	+	4.15044	NA	Intergenic	ALR/Alpha|Satellite|centr	-83382	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_94706	chr7	105807307	105807395	+	4.15044	NA	Intergenic	Intergenic	-54258	NM_006754	6856	Hs.80919	NM_006754	HPRD:15459	SYPL1	H-SP1|SYPL	synaptophysin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_16525	chr11	842747	842895	+	4.14825	NA	promoter-TSS (NM_021128)	promoter-TSS (NM_021128)	-3	NM_003271	7106	Hs.654836	NM_003271	HPRD:04033	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
19-PTNLD28-TUMOR_peak_32623	chr15	25683544	25683788	+	4.14783	NA	5' UTR (NM_000462, exon 1 of 14)	5' UTR (NM_000462, exon 1 of 14)	509	NM_000462	7337	Hs.598862	NM_000462	HPRD:03375	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A	ubiquitin protein ligase E3A	protein-coding
19-PTNLD28-TUMOR_peak_94361	chr7	100494256	100494370	+	4.14783	NA	promoter-TSS (NM_001282449)	promoter-TSS (NM_001282449)	-721	NM_001282449	43	Hs.154495	NM_000665	HPRD:00010	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
19-PTNLD28-TUMOR_peak_74317	chr4	8161098	8161186	+	4.14668	NA	promoter-TSS (NM_001130087)	promoter-TSS (NM_001130087)	-583	NM_001130088	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_68906	chr3	69228353	69228464	+	4.14605	NA	intron (NM_015123, intron 21 of 22)	intron (NM_015123, intron 21 of 22)	-56662	NM_198271	56203	Hs.350621	NM_198271	HPRD:13993	LMOD3	-	leiomodin 3 (fetal)	protein-coding
19-PTNLD28-TUMOR_peak_57844	chr2	202837060	202837169	+	4.14605	NA	Intergenic	MIRc|SINE|MIR	-62196	NM_003507	8324	Hs.173859	NM_003507	HPRD:04560	FZD7	FzE3	frizzled class receptor 7	protein-coding
19-PTNLD28-TUMOR_peak_81056	chr5	87565105	87565241	+	4.14605	NA	promoter-TSS (NM_153354)	promoter-TSS (NM_153354)	340	NR_039994	100505894	Hs.559426	NR_039993	ENSG00000247828	TMEM161B-AS1	linc-POLR3G-8	TMEM161B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_34522	chr15	75198653	75198744	+	4.14502	NA	exon (NM_020447, exon 2 of 5)	exon (NM_020447, exon 2 of 5)	764	NM_020447	57184	Hs.367690	NM_020447	HPRD:12667	FAM219B	C15orf17	family with sequence similarity 219, member B	protein-coding
19-PTNLD28-TUMOR_peak_35706	chr16	1238837	1238933	+	4.14502	NA	intron (NM_001005407, intron 2 of 33)	intron (NM_001005407, intron 2 of 33)	35644	NM_001005407	8912	Hs.459642	NM_021098	HPRD:07442	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding
19-PTNLD28-TUMOR_peak_4705	chr1	88110294	88110390	+	4.14502	NA	Intergenic	Intergenic	-273004	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
19-PTNLD28-TUMOR_peak_91034	chr7	4815729	4815915	+	4.13848	NA	intron (NM_014855, intron 1 of 16)	intron (NM_014855, intron 1 of 16)	560	NM_014855	9907	Hs.558440	NM_014855		AP5Z1	KIAA0415|SPG48|zeta	adaptor-related protein complex 5, zeta 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_78614	chr5	785321	785484	+	4.13843	NA	Intergenic	CpG	65699	NM_024786	79844	Hs.732788	NM_024786	HPRD:15708	ZDHHC11	ZNF399	zinc finger, DHHC-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_43374	chr17	73074338	73074521	+	4.13522	NA	Intergenic	Intergenic	-9393	NM_001271765	9121	Hs.592095	NM_004695	HPRD:04856	SLC16A5	MCT5|MCT6	solute carrier family 16 (monocarboxylate transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_86285	chr6	27969613	27969748	+	4.13158	NA	Intergenic	HERVL18-int|LTR|ERVL	44661	NM_012367	26212	Hs.532145	NM_012367	HPRD:17696	OR2B6	OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2	olfactory receptor, family 2, subfamily B, member 6	protein-coding
19-PTNLD28-TUMOR_peak_61212	chr20	42758505	42758593	+	4.13158	NA	intron (NM_020433, intron 2 of 5)	MLT1D|LTR|ERVL-MaLR	57669	NM_175913	57158	Hs.441737	NM_020433	HPRD:12006	JPH2	CMH17|JP-2|JP2	junctophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_18511	chr11	48020372	48020537	+	4.13158	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	18344	NM_002843	5795	Hs.318547	NM_002843	HPRD:02955	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type, J	protein-coding
19-PTNLD28-TUMOR_peak_39246	chr16	86543155	86543300	+	4.13158	NA	promoter-TSS (NM_001451)	promoter-TSS (NM_001451)	-761	NR_033925	400550	Hs.448825	NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|TCONS_00024240|lincFOXF1	FOXF1 adjacent non-coding developmental regulatory RNA	ncRNA
19-PTNLD28-TUMOR_peak_71126	chr3	137489742	137489858	+	4.13158	NA	promoter-TSS (NR_109987)	promoter-TSS (NR_109987)	-953	NR_109987	100507274	Hs.360349	NR_109987		LINC01210	-	long intergenic non-protein coding RNA 1210	ncRNA
19-PTNLD28-TUMOR_peak_44191	chr18	73273	73445	+	4.13158	NA	Intergenic	CpG	-35706	NR_033770	727758	Hs.585843	NR_033770		ROCK1P1	-	Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_35144	chr15	89921278	89921499	+	4.13158	NA	non-coding (NR_015411, exon 1 of 7)	non-coding (NR_015411, exon 1 of 7)	115	NR_015411	254559	Hs.136313	NR_015411		LINC00925	-	long intergenic non-protein coding RNA 925	ncRNA
19-PTNLD28-TUMOR_peak_84389	chr5	177619313	177619401	+	4.13158	NA	Intergenic	FRAM|SINE|Alu	-4924	NR_003281	64396	Hs.591738	NM_022471		GMCL1P1	GCL|GMCL1L|GMCL2	germ cell-less, spermatogenesis associated 1 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_100753	chr8	127559331	127559465	+	4.13055	NA	Intergenic	MIR|SINE|MIR	11313	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_75051	chr4	40631062	40631150	+	4.12907	NA	intron (NM_001098634, intron 1 of 6)	intron (NM_001098634, intron 1 of 6)	777	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
19-PTNLD28-TUMOR_peak_24546	chr12	54613798	54613983	+	4.12907	NA	Intergenic	AluY|SINE|Alu	11370	NR_039851	100616400		NR_039851	miRBase:MI0017335	MIR3198-2	-	microRNA 3198-2	ncRNA
19-PTNLD28-TUMOR_peak_43355	chr17	72919683	72919771	+	4.12907	NA	promoter-TSS (NM_173477)	promoter-TSS (NM_173477)	-369	NM_173477	124590	Hs.376688	NM_173477	HPRD:09648	USH1G	ANKS4A|SANS	Usher syndrome 1G (autosomal recessive)	protein-coding
19-PTNLD28-TUMOR_peak_99639	chr8	98787204	98787425	+	4.12694	NA	promoter-TSS (NM_018407)	promoter-TSS (NM_018407)	-495	NM_018407	55353	Hs.492314	NM_018407		LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
19-PTNLD28-TUMOR_peak_74264	chr4	7657506	7657594	+	4.12044	NA	intron (NM_020777, intron 5 of 26)	intron (NM_020777, intron 5 of 26)	-98267	NR_026892	84740	Hs.663029	NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_97868	chr8	27805787	27805897	+	4.12044	NA	intron (NM_173833, intron 3 of 8)	intron (NM_173833, intron 3 of 8)	44527	NM_173833	286133	Hs.591833	NM_173833	HPRD:11356	SCARA5	NET33|Tesr	scavenger receptor class A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_29388	chr14	21686709	21686947	+	4.12044	NA	intron (NM_001077443, intron 4 of 7)	AluSx|SINE|Alu	-11769	NR_038971	283624	Hs.525210	NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
19-PTNLD28-TUMOR_peak_48491	chr19	32209490	32209642	+	4.12044	NA	Intergenic	Intergenic	126379	NM_001205273	100507527	Hs.432564	NM_001205273		THEG5	-	testis highly expressed protein 5	protein-coding
19-PTNLD28-TUMOR_peak_36863	chr16	23741210	23741298	+	4.12044	NA	Intergenic	LTR16A1|LTR|ERVL	-16433	NM_033266	10595	Hs.592041	NM_033266	HPRD:04944	ERN2	IRE1-BETA|IRE1b	endoplasmic reticulum to nucleus signaling 2	protein-coding
19-PTNLD28-TUMOR_peak_3510	chr1	52869887	52870013	+	4.11965	NA	promoter-TSS (NM_032864)	promoter-TSS (NM_032864)	193	NM_001190819	4998	Hs.17908	NM_004153	HPRD:03544	ORC1	HSORC1|ORC1L|PARC1	origin recognition complex, subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_53657	chr2	79282041	79282139	+	4.11666	NA	Intergenic	HERVH-int|LTR|ERV1	29278	NM_198448	130120	Hs.447084	NM_198448	HPRD:10137	REG3G	LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429	regenerating islet-derived 3 gamma	protein-coding
19-PTNLD28-TUMOR_peak_13992	chr10	70320537	70320625	+	4.11666	NA	intron (NM_030625, intron 1 of 11)	CpG	464	NM_030625	80312	Hs.567594	NM_030625	HPRD:09694	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
19-PTNLD28-TUMOR_peak_82179	chr5	133205016	133205104	+	4.11666	NA	Intergenic	Intergenic	99346	NM_020199	56951	Hs.744034	NM_020199	HPRD:12829	C5orf15	KCT2	chromosome 5 open reading frame 15	protein-coding
19-PTNLD28-TUMOR_peak_37607	chr16	46673328	46673459	+	4.11666	NA	Intergenic	Intergenic	-18082	NM_024745	79801	Hs.123253	NM_024745	HPRD:11557	SHCBP1	PAL	SHC SH2-domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_102296	chr9	16257744	16258008	+	4.11666	NA	intron (NR_073471, intron 1 of 3)	L2a|LINE|L2	-4771	NM_001271829	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_21795	chr11	123229357	123229445	+	4.11666	NA	Intergenic	CpG	22819	NR_039714	100616319		NR_039714	miRBase:MI0016855	MIR4493	-	microRNA 4493	ncRNA
19-PTNLD28-TUMOR_peak_85015	chr6	4985112	4985216	+	4.11666	NA	Intergenic	Intergenic	19133	NM_001286133	10799	Hs.511756	NM_006638	HPRD:09361	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP 40kDa subunit	protein-coding
19-PTNLD28-TUMOR_peak_32794	chr15	30279307	30279395	+	4.11666	NA	Intergenic	L1MEd|LINE|L1	-18349	NM_001301025	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_21343	chr11	115497271	115497366	+	4.11666	NA	Intergenic	Intergenic	-122077	NM_001301043	23705	Hs.370510	NM_014333	HPRD:05746	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
19-PTNLD28-TUMOR_peak_42421	chr17	54124754	54124842	+	4.11666	NA	Intergenic	Intergenic	-106038	NM_153228	162282	Hs.673040	NM_153228	HPRD:08238	ANKFN1	-	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_80423	chr5	68258611	68259020	+	4.11666	NA	Intergenic	Intergenic	-130961	NM_001251969	64924	Hs.631975	NM_022902	HPRD:06381	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 (zinc transporter), member 5	protein-coding
19-PTNLD28-TUMOR_peak_17786	chr11	30078295	30078422	+	4.11666	NA	Intergenic	L1PA3|LINE|L1	-39781	NM_002233	3739	Hs.592002	NM_002233	HPRD:01444	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_34671	chr15	78169020	78169140	+	4.11666	NA	Intergenic	Intergenic	50108	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_44856	chr18	20393742	20393833	+	4.11666	NA	Intergenic	Intergenic	-26987	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_87028	chr6	35527921	35528009	+	4.11666	NA	Intergenic	LTR13|LTR|ERVK	-47286	NM_003322	7287	Hs.485208	NM_003322	HPRD:03788	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding
19-PTNLD28-TUMOR_peak_152	chr1	1369796	1369983	+	4.11351	NA	Intergenic	Intergenic	-1014	NM_199121	64856	Hs.449009	NM_022834	HPRD:18292	VWA1	WARP	von Willebrand factor A domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_38526	chr16	70100084	70100172	+	4.11351	NA	promoter-TSS (NR_003610)	promoter-TSS (NR_003610)	-277	NR_003610	283970	Hs.513695	NM_199134	ENSG00000196696	PDXDC2P	NPIP|PDXDC2	pyridoxal-dependent decarboxylase domain containing 2, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_12985	chr10	38145952	38146119	+	4.11351	NA	5' UTR (NM_001267606, exon 1 of 5)	5' UTR (NM_001267606, exon 1 of 5)	529	NM_001267607	57209	Hs.528423	NM_021045	HPRD:15757	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
19-PTNLD28-TUMOR_peak_11369	chr1	244012489	244012605	+	4.11351	NA	Intergenic	Intergenic	-5661	NM_001206729	10000	Hs.498292	NM_005465	HPRD:06441	AKT3	MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	v-akt murine thymoma viral oncogene homolog 3	protein-coding
19-PTNLD28-TUMOR_peak_46287	chr18	73351250	73351511	+	4.11351	NA	Intergenic	Intergenic	-211791	NM_001037331	284274	Hs.666744	NM_001037331		SMIM21	C18orf62	small integral membrane protein 21	protein-coding
19-PTNLD28-TUMOR_peak_42468	chr17	55163184	55163325	+	4.11176	NA	5' UTR (NM_001242903, exon 1 of 12)	5' UTR (NM_001242903, exon 1 of 12)	119	NM_001242902	8165	Hs.463506	NM_003488	HPRD:03905	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A kinase (PRKA) anchor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_90327	chr6	159420447	159420616	+	4.10972	NA	exon (NM_031924, exon 1 of 8)	exon (NM_031924, exon 1 of 8)	667	NM_031924	83861	Hs.154628	NM_031924	HPRD:15279	RSPH3	RSHL2|RSP3|dJ111C20.1	radial spoke 3 homolog (Chlamydomonas)	protein-coding
19-PTNLD28-TUMOR_peak_44700	chr18	13261792	13261933	+	4.10799	NA	intron (NM_181482, intron 1 of 5)	intron (NM_181482, intron 1 of 5)	-16242	NM_181481	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_39853	chr17	4857131	4857219	+	4.10799	NA	intron (NM_001976, intron 6 of 11)	intron (NM_001976, intron 6 of 11)	2791	NM_053013	2027	Hs.224171	NM_001976	HPRD:11746	ENO3	GSD13|MSE	enolase 3 (beta, muscle)	protein-coding
19-PTNLD28-TUMOR_peak_23311	chr12	19284127	19284306	+	4.10790	NA	intron (NM_001256470, intron 2 of 31)	intron (NM_001256470, intron 2 of 31)	1590	NM_001190860	54477	Hs.188614	NM_019012	HPRD:09684	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing, family A member 5	protein-coding
19-PTNLD28-TUMOR_peak_32780	chr15	30114261	30114430	+	4.10408	NA	promoter-TSS (NM_001301026)	promoter-TSS (NM_001301026)	361	NM_175610	7082	Hs.743990	NM_003257	HPRD:03002	TJP1	ZO-1	tight junction protein 1	protein-coding
19-PTNLD28-TUMOR_peak_43032	chr17	65010556	65010678	+	4.10360	NA	intron (NM_014405, intron 1 of 3)	L3|LINE|CR1	-30035	NM_000727	786	Hs.147989	NM_000727	HPRD:00249	CACNG1	CACNLG	calcium channel, voltage-dependent, gamma subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_74171	chr4	6513579	6513667	+	4.10360	NA	intron (NM_001206995, intron 2 of 9)	(TGG)n|Simple_repeat|Simple_repeat	-39297	NM_020416	5522	Hs.479069	NM_020416	HPRD:09345	PPP2R2C	B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
19-PTNLD28-TUMOR_peak_31233	chr14	74100280	74100409	+	4.10360	NA	Intergenic	CpG	-11234	NM_031427	83544	Hs.271270	NM_031427	HPRD:16616	DNAL1	C14orf168|CILD16	dynein, axonemal, light chain 1	protein-coding
19-PTNLD28-TUMOR_peak_98403	chr8	41504026	41504256	+	4.10360	NA	exon (NM_152568, exon 2 of 2)	exon (NM_152568, exon 2 of 2)	737	NM_152568	157848	Hs.647132	NM_152568		NKX6-3	NKX6.3	NK6 homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_59015	chr2	236482723	236482868	+	4.10360	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	80062	NM_001244888	116987	Hs.435039	NM_014914	HPRD:16359	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
19-PTNLD28-TUMOR_peak_49014	chr19	39964939	39965050	+	4.10360	NA	exon (NM_001130825, exon 26 of 29)	exon (NM_001130825, exon 26 of 29)	-6058	NM_001001563	92609	Hs.590956	NM_001001563	HPRD:12118	TIMM50	TIM50|TIM50L	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_75027	chr4	40297204	40297292	+	4.10360	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-11954	NR_121641	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA
19-PTNLD28-TUMOR_peak_12704	chr10	30282034	30282238	+	4.10360	NA	Intergenic	Intergenic	66352	NM_020848	57608	Hs.533953	NM_020848	ENSG00000165757	KIAA1462	JCAD	KIAA1462	protein-coding
19-PTNLD28-TUMOR_peak_44454	chr18	8601720	8602001	+	4.10360	NA	Intergenic	Tigger6b|DNA|TcMar-Tigger	-7583	NM_001025300	201475	Hs.270074	NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_106200	chr9	130558847	130559012	+	4.10360	NA	Intergenic	Intergenic	-6208	NM_004957	2356	Hs.335084	NM_004957	HPRD:00642	FPGS	-	folylpolyglutamate synthase	protein-coding
19-PTNLD28-TUMOR_peak_57113	chr2	176945422	176945696	+	4.10360	NA	exon (NM_001080458, exon 3 of 3)	exon (NM_001080458, exon 3 of 3)	3131	NM_001080458	344191	Hs.452341	NM_001080458		EVX2	EVX-2	even-skipped homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_44004	chr17	79679661	79679749	+	4.10163	NA	intron (NM_001270888, intron 1 of 10)	CpG	439	NM_001270953	1468	Hs.548187	NM_012140	HPRD:08424	SLC25A10	DIC	solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	protein-coding
19-PTNLD28-TUMOR_peak_98036	chr8	30389035	30389271	+	4.09638	NA	intron (NM_001008712, intron 5 of 6)	intron (NM_001008712, intron 5 of 6)	-106964	NM_001206847	100507341	Hs.659493	NM_001206847	ENSG00000253457	SMIM18	-	small integral membrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_78030	chr4	170540788	170540901	+	4.09638	NA	promoter-TSS (NM_001243372)	promoter-TSS (NM_001243372)	-828	NM_001829	1182	Hs.481186	NM_001829	HPRD:02785	CLCN3	CLC3|ClC-3	chloride channel, voltage-sensitive 3	protein-coding
19-PTNLD28-TUMOR_peak_75803	chr4	77818305	77818423	+	4.09553	NA	exon (NM_001029870, exon 1 of 1)	exon (NM_001029870, exon 1 of 1)	638	NM_001029870	345079	Hs.257292	NM_001029870	HPRD:18789	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
19-PTNLD28-TUMOR_peak_49328	chr19	45248727	45248878	+	4.09553	NA	Intergenic	Intergenic	-3176	NM_005178	602	Hs.31210	NM_005178	HPRD:00179	BCL3	BCL4|D19S37	B-cell CLL/lymphoma 3	protein-coding
19-PTNLD28-TUMOR_peak_54069	chr2	90377228	90377358	+	4.08915	NA	Intergenic	HSATII|Satellite|Satellite	1265409	NR_039635	100616399		NR_039635	miRBase:MI0016776	MIR4436A	-	microRNA 4436a	ncRNA
19-PTNLD28-TUMOR_peak_43841	chr17	77817983	77818071	+	4.08906	NA	Intergenic	CpG	-4814	NM_003655	8535	Hs.405046	NM_003655	HPRD:04357	CBX4	NBP16|PC2	chromobox homolog 4	protein-coding
19-PTNLD28-TUMOR_peak_47855	chr19	16940117	16940207	+	4.08850	NA	promoter-TSS (NM_015260)	promoter-TSS (NM_015260)	-36	NM_015260	23309	Hs.13999	NM_015260	HPRD:09691	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
19-PTNLD28-TUMOR_peak_90746	chr7	559824	559925	+	4.08850	NA	promoter-TSS (NM_002607)	promoter-TSS (NM_002607)	-154	NR_033963	441307	Hs.521334	NR_033963		FLJ44511	-	uncharacterized LOC441307	ncRNA
19-PTNLD28-TUMOR_peak_44795	chr18	19321218	19321330	+	4.08850	NA	promoter-TSS (NM_020774)	promoter-TSS (NM_020774)	-16	NM_020774	57534	Hs.140903	NM_020774	HPRD:06660	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	mindbomb E3 ubiquitin protein ligase 1	protein-coding
19-PTNLD28-TUMOR_peak_16982	chr11	8730971	8731059	+	4.08850	NA	intron (NM_139157, intron 10 of 18)	intron (NM_139157, intron 10 of 18)	24029	NR_002977	677826	Hs.745552	NR_002977		SNORA45B	ACA3-2|SNORA45	small nucleolar RNA, H/ACA box 45B	snoRNA
19-PTNLD28-TUMOR_peak_83221	chr5	150052160	150052250	+	4.08663	NA	intron (NM_133371, intron 6 of 6)	L2a|LINE|L2	11802	NM_133371	91977	Hs.91626	NM_133371	HPRD:17624	MYOZ3	CS-3|CS3|FRP3	myozenin 3	protein-coding
19-PTNLD28-TUMOR_peak_7137	chr1	154968233	154968360	+	4.08510	NA	Intergenic	Intergenic	2234	NM_018655	55891	Hs.272399	NM_018655	HPRD:09569	LENEP	LEP503	lens epithelial protein	protein-coding
19-PTNLD28-TUMOR_peak_41427	chr17	39480500	39480638	+	4.08316	NA	Intergenic	Intergenic	-8622	NM_031964	83902	Hs.307009	NM_031964	HPRD:13935	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
19-PTNLD28-TUMOR_peak_59272	chr2	241782204	241782482	+	4.08316	NA	Intergenic	LTR10F|LTR|ERV1	-22618	NM_001244008	547	Hs.516802	NM_004321	HPRD:03156	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
19-PTNLD28-TUMOR_peak_106554	chr9	135978942	135979092	+	4.08316	NA	intron (NM_001042368, intron 11 of 17)	intron (NM_001042368, intron 11 of 17)	17620	NM_001271776	5900	Hs.106185	NM_006266	HPRD:03371	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
19-PTNLD28-TUMOR_peak_81789	chr5	121850739	121850827	+	4.08316	NA	Intergenic	L1PA3|LINE|L1	-36001	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
19-PTNLD28-TUMOR_peak_14418	chr10	77307218	77307342	+	4.08316	NA	Intergenic	Intergenic	138365	NR_110304	101929234	Hs.694695	NR_110304	ENSG00000272692	LOC101929234	-	uncharacterized LOC101929234	ncRNA
19-PTNLD28-TUMOR_peak_108575	chrX	65406273	65406483	+	4.08316	NA	intron (NM_001282141, intron 4 of 17)	L1HS|LINE|L1	22306	NM_014799	9843	Hs.31720	NM_014799	HPRD:02159	HEPH	CPL	hephaestin	protein-coding
19-PTNLD28-TUMOR_peak_91734	chr7	27136046	27136217	+	4.08316	NA	promoter-TSS (NM_153620)	promoter-TSS (NM_153620)	418	NR_038366	100506311	Hs.445239	NR_038366	ENSG00000233429	HOTAIRM1	HOXA-AS1|HOXA1-AS1|NCRNA00179	HOXA transcript antisense RNA, myeloid-specific 1	ncRNA
19-PTNLD28-TUMOR_peak_19014	chr11	62462376	62462469	+	4.08316	NA	intron (NM_001130702, intron 3 of 9)	intron (NM_001130702, intron 3 of 9)	-5051	NM_203422	221091	Hs.427449	NM_203422	HPRD:17322	LRRN4CL	-	LRRN4 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_56031	chr2	139200891	139201048	+	4.08316	NA	Intergenic	AluSq2|SINE|Alu	-58381	NM_001001664	339745	Hs.333297	NM_001001664	HPRD:11261	SPOPL	BTBD33	speckle-type POZ protein-like	protein-coding
19-PTNLD28-TUMOR_peak_97461	chr8	20119145	20119236	+	4.08316	NA	Intergenic	Intergenic	-6387	NM_021020	11178	Hs.521432	NM_021020	HPRD:05945	LZTS1	F37|FEZ1	leucine zipper, putative tumor suppressor 1	protein-coding
19-PTNLD28-TUMOR_peak_1250	chr1	20146666	20146839	+	4.08316	NA	Intergenic	Intergenic	-4981	NM_019062	54546	Hs.124835	NM_019062	HPRD:07885	RNF186	-	ring finger protein 186	protein-coding
19-PTNLD28-TUMOR_peak_93167	chr7	72778697	72778800	+	4.08316	NA	Intergenic	Intergenic	36513	NM_003602	8468	Hs.661266	NM_003602	HPRD:05326	FKBP6	FKBP36	FK506 binding protein 6, 36kDa	protein-coding
19-PTNLD28-TUMOR_peak_79852	chr5	52720516	52720644	+	4.08316	NA	Intergenic	Intergenic	-55684	NM_006350	10468	Hs.9914	NM_006350	HPRD:00641	FST	FS	follistatin	protein-coding
19-PTNLD28-TUMOR_peak_18397	chr11	46336734	46336916	+	4.08316	NA	intron (NM_052854, intron 8 of 11)	intron (NM_052854, intron 8 of 11)	-17630	NM_201532	8525	Hs.502461	NM_003646	HPRD:03260	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase, zeta	protein-coding
19-PTNLD28-TUMOR_peak_90598	chr6	168819429	168819517	+	4.08316	NA	Intergenic	Intergenic	-22358	NM_022138	64094	Hs.487200	NM_022138	HPRD:06244	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
19-PTNLD28-TUMOR_peak_55172	chr2	115571280	115571423	+	4.08316	NA	intron (NM_001178036, intron 2 of 26)	intron (NM_001178036, intron 2 of 26)	-250896	NM_001178037	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_23609	chr12	30975452	30975597	+	4.08316	NA	Intergenic	CpG	26909	NR_040245	100287314	Hs.355210	NR_040245	ENSG00000235884	LINC00941	-	long intergenic non-protein coding RNA 941	ncRNA
19-PTNLD28-TUMOR_peak_63092	chr21	31311972	31312087	+	4.08316	NA	5' UTR (NM_000830, exon 1 of 17)	5' UTR (NM_000830, exon 1 of 17)	253	NM_000830	2897	Hs.664641	NM_000830	HPRD:00693	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1	glutamate receptor, ionotropic, kainate 1	protein-coding
19-PTNLD28-TUMOR_peak_94097	chr7	97362687	97362835	+	4.08316	NA	intron (NM_013996, intron 2 of 5)	CpG-24631	1490	NM_013998	6863	Hs.2563	NM_003182	HPRD:08876	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin, precursor 1	protein-coding
19-PTNLD28-TUMOR_peak_32287	chr14	105155428	105155595	+	4.08125	NA	promoter-TSS (NM_032714)	promoter-TSS (NM_032714)	-432	NM_032714	64423	Hs.24956	NM_022489	HPRD:08648	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin, FH2 and WH2 domain containing	protein-coding
19-PTNLD28-TUMOR_peak_17990	chr11	34364902	34365000	+	4.08054	NA	intron (NM_145804, intron 1 of 16)	MER5B|DNA|hAT-Charlie	14604	NM_145804	25841	Hs.23361	NM_145804	HPRD:10624	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_44220	chr18	657396	657656	+	4.07952	NA	promoter-TSS (NM_001071)	promoter-TSS (NM_001071)	-78	NM_001071	7298	Hs.369762	NM_001071	HPRD:01774	TYMS	HST422|TMS|TS	thymidylate synthetase	protein-coding
19-PTNLD28-TUMOR_peak_26829	chr12	122688728	122688826	+	4.07952	NA	TTS (NM_152759)	TTS (NM_152759)	549	NM_030765	79369	Hs.363315	NM_030765	HPRD:12058	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_32248	chr14	104320422	104320553	+	4.07562	NA	intron (NR_038436, intron 1 of 2)	intron (NR_038436, intron 1 of 2)	6429	NR_038436	145216	Hs.578091	NR_038436	ENSG00000258735	LINC00637	-	long intergenic non-protein coding RNA 637	ncRNA
19-PTNLD28-TUMOR_peak_49537	chr19	47345081	47345179	+	4.07562	NA	intron (NM_001301078, intron 2 of 4)	MLT1D|LTR|ERVL-MaLR	8417	NM_001301076	1175	Hs.119591	NM_004069	HPRD:03762	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor-related protein complex 2, sigma 1 subunit	protein-coding
19-PTNLD28-TUMOR_peak_77519	chr4	149244472	149244615	+	4.07562	NA	intron (NM_000901, intron 2 of 8)	L1PA2|LINE|L1	119129	NM_000901	4306	Hs.163924	NM_000901	HPRD:02991	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3, group C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_79040	chr5	14781379	14781502	+	4.07562	NA	intron (NM_054027, intron 1 of 11)	intron (NM_054027, intron 1 of 11)	44681	NR_039780	100616271		NR_039780		MIR4637	-	microRNA 4637	ncRNA
19-PTNLD28-TUMOR_peak_70068	chr3	119914660	119914793	+	4.07562	NA	intron (NM_153002, intron 2 of 8)	MIRc|SINE|MIR	48416	NM_001168271	165829	Hs.333358	NM_153002	HPRD:17067	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding
19-PTNLD28-TUMOR_peak_19343	chr11	65759694	65759782	+	4.07318	NA	Intergenic	L1M5|LINE|L1	-9812	NM_003860	8815	Hs.433759	NM_003860	HPRD:04817	BANF1	BAF|BCRP1|D14S1460|NGPS	barrier to autointegration factor 1	protein-coding
19-PTNLD28-TUMOR_peak_16637	chr11	2177832	2177920	+	4.07255	NA	intron (NR_003512, intron 2 of 6)	intron (NR_003512, intron 2 of 6)	4563	NM_001185097	3630	Hs.272259	NM_000207	HPRD:01455	INS	IDDM1|IDDM2|ILPR|IRDN|MODY10	insulin	protein-coding
19-PTNLD28-TUMOR_peak_64316	chr22	18958017	18958219	+	4.07255	NA	non-coding (NR_002733, exon 1 of 4)	non-coding (NR_002733, exon 1 of 4)	107	NR_110533	26220	Hs.646438	NR_002733		DGCR5	LINC00037|NCRNA00037	DiGeorge syndrome critical region gene 5 (non-protein coding)	pseudo
19-PTNLD28-TUMOR_peak_95176	chr7	128808240	128808333	+	4.07064	NA	3' UTR (NM_178562, exon 8 of 8)	3' UTR (NM_178562, exon 8 of 8)	-20427	NM_005631	6608	Hs.437846	NM_005631	HPRD:03294	SMO	FZD11|Gx|SMOH	smoothened, frizzled class receptor	protein-coding
19-PTNLD28-TUMOR_peak_95177	chr7	128808435	128808526	+	4.07064	NA	3' UTR (NM_178562, exon 8 of 8)	3' UTR (NM_178562, exon 8 of 8)	-20233	NM_005631	6608	Hs.437846	NM_005631	HPRD:03294	SMO	FZD11|Gx|SMOH	smoothened, frizzled class receptor	protein-coding
19-PTNLD28-TUMOR_peak_54206	chr2	95870259	95870440	+	4.07064	NA	Intergenic	L2a|LINE|L2	39187	NM_001017396	7549	Hs.590916	NM_021088	HPRD:11834	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_104577	chr9	94559238	94559331	+	4.07064	NA	intron (NM_004560, intron 1 of 8)	intron (NM_004560, intron 1 of 8)	153160	NM_004560	4920	Hs.98255	NM_004560	HPRD:03822	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_90774	chr7	916695	916783	+	4.06698	NA	intron (NM_015949, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	548	NM_015949	51608	Hs.107387	NM_015949	HPRD:12909	GET4	C7orf20|CEE|TRC35	golgi to ER traffic protein 4 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_85874	chr6	21587691	21587824	+	4.06698	NA	Intergenic	CpG	-6215	NM_003107	6659	Hs.643910	NM_003107	HPRD:01695	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
19-PTNLD28-TUMOR_peak_36483	chr16	15451526	15451701	+	4.06259	NA	Intergenic	AluYc|SINE|Alu	20538	NM_001277325	100288332	Hs.676266	NM_001277325	ENSG00000183793	NPIPA5	NPIP	nuclear pore complex interacting protein family, member A5	protein-coding
19-PTNLD28-TUMOR_peak_105291	chr9	111776684	111776812	+	4.05870	NA	promoter-TSS (NM_001286974)	promoter-TSS (NM_001286974)	-874	NM_001286974	8727	Hs.58488	NM_003798	HPRD:09210	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin (cadherin-associated protein), alpha-like 1	protein-coding
19-PTNLD28-TUMOR_peak_103518	chr9	68376823	68376911	+	4.05760	NA	Intergenic	TAR1|Satellite|telo	77508	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_43978	chr17	79490742	79490950	+	4.05584	NA	Intergenic	Intergenic	-4571	NM_001077182	25794	Hs.118555	NM_012418	HPRD:06366	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
19-PTNLD28-TUMOR_peak_18455	chr11	47270635	47270799	+	4.05152	NA	promoter-TSS (NM_001610)	promoter-TSS (NM_001610)	-260	NM_001610	53	Hs.532492	NM_001610	HPRD:01375	ACP2	-	acid phosphatase 2, lysosomal	protein-coding
19-PTNLD28-TUMOR_peak_31459	chr14	78127221	78127355	+	4.05152	NA	Intergenic	Intergenic	-44178	NM_004863	9517	Hs.435661	NM_004863	HPRD:05755	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase, long chain base subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_104752	chr9	97766710	97766878	+	4.05152	NA	intron (NM_032823, intron 9 of 14)	CpG	-60838	NR_106729	102466518		NR_106729		MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
19-PTNLD28-TUMOR_peak_81279	chr5	96632935	96633023	+	4.04982	NA	Intergenic	L1MA3|LINE|L1	-113974	NM_001159749	55781	Hs.27021	NM_018343	HPRD:10193	RIOK2	RIO2	RIO kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_28882	chr13	102068819	102068988	+	4.04982	NA	promoter-TSS (NM_052867)	promoter-TSS (NM_052867)	-90	NM_052867	259232	Hs.525146	NM_052867	HPRD:15647	NALCN	CanIon|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
19-PTNLD28-TUMOR_peak_101293	chr8	138243146	138243364	+	4.04982	NA	Intergenic	Intergenic	182576	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
19-PTNLD28-TUMOR_peak_2882	chr1	42277793	42277881	+	4.04982	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	106541	NM_024503	59269	Hs.403972	NM_024503	HPRD:09442	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_1551	chr1	24689601	24689767	+	4.04982	NA	intron (NM_001199013, intron 7 of 8)	intron (NM_001199013, intron 7 of 8)	40154	NM_021180	57822	Hs.657920	NM_021180	HPRD:12210	GRHL3	SOM|TFCP2L4|VWS2	grainyhead-like 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_103028	chr9	38016611	38016707	+	4.04982	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	52551	NM_003028	6461	Hs.521482	NM_003028		SHB	bA3J10.2	Src homology 2 domain containing adaptor protein B	protein-coding
19-PTNLD28-TUMOR_peak_98643	chr8	48676953	48677098	+	4.04982	NA	Intergenic	CpG	-26299	NM_005195	1052	Hs.440829	NM_005195		CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
19-PTNLD28-TUMOR_peak_41158	chr17	35087478	35087769	+	4.04982	NA	Intergenic	Intergenic	129598	NM_024864	79922	Hs.194864	NM_024864	HPRD:08656	MRM1	-	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_88783	chr6	91320655	91320799	+	4.04982	NA	Intergenic	MIR|SINE|MIR	-23707	NM_003188	6885	Hs.594838	NM_003188	HPRD:04011	MAP3K7	MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_109127	chrX	107979747	107979835	+	4.04982	NA	promoter-TSS (NM_003604)	promoter-TSS (NM_003604)	21	NR_110652	101928358	Hs.722300	NR_110652		LOC101928358	-	uncharacterized LOC101928358	ncRNA
19-PTNLD28-TUMOR_peak_51796	chr2	28080490	28080578	+	4.04982	NA	intron (NM_001287580, intron 3 of 8)	intron (NM_001287580, intron 3 of 8)	32729	NM_001287580	64080	Hs.11916	NM_022128		RBKS	RBSK	ribokinase	protein-coding
19-PTNLD28-TUMOR_peak_54528	chr2	101618999	101619153	+	4.04863	NA	intron (NM_001098577, intron 1 of 4)	intron (NM_001098577, intron 1 of 4)	385	NM_001098577	6160	Hs.469473	NM_000993	HPRD:17994	RPL31	L31	ribosomal protein L31	protein-coding
19-PTNLD28-TUMOR_peak_50248	chr19	54398119	54398226	+	4.04863	NA	intron (NM_002739, intron 9 of 17)	L2b|LINE|L2	12705	NM_002739	5582	Hs.631564	NM_002739	HPRD:01502	PRKCG	PKC-gamma|PKCC|PKCG|SCA14	protein kinase C, gamma	protein-coding
19-PTNLD28-TUMOR_peak_29543	chr14	24475805	24476004	+	4.04863	NA	promoter-TSS (NR_102688)	promoter-TSS (NR_102688)	-314	NM_001277864	728635	Hs.647569	NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase (SDR family) member 4 like 1	protein-coding
19-PTNLD28-TUMOR_peak_27849	chr13	37002330	37002454	+	4.04805	NA	Intergenic	Intergenic	-3575	NM_001111046	8900	Hs.417050	NM_003914	HPRD:04946	CCNA1	CT146	cyclin A1	protein-coding
19-PTNLD28-TUMOR_peak_101350	chr8	140383633	140383721	+	4.04805	NA	Intergenic	Intergenic	331622	NR_104210	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_18453	chr11	47263727	47263815	+	4.04805	NA	intron (NM_001610, intron 10 of 10)	L2a|LINE|L2	-6080	NM_001251934	10062	Hs.438863	NM_005693	HPRD:07211	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1, group H, member 3	protein-coding
19-PTNLD28-TUMOR_peak_21031	chr11	108463651	108463859	+	4.04598	NA	intron (NM_015065, intron 1 of 5)	CpG	619	NM_015065	23086	Hs.28540	NM_015065	HPRD:08341	EXPH5	SLAC2-B|SLAC2B	exophilin 5	protein-coding
19-PTNLD28-TUMOR_peak_53019	chr2	62933339	62933455	+	4.04594	NA	promoter-TSS (NM_001142614)	promoter-TSS (NM_001142614)	396	NM_001142616	23301	Hs.271667	NM_015252	HPRD:10109	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_55022	chr2	113384290	113384398	+	4.04594	NA	Intergenic	Intergenic	17413	NR_033871	400999	Hs.585221	NR_033871		FLJ42351	-	uncharacterized LOC400999	ncRNA
19-PTNLD28-TUMOR_peak_88643	chr6	87861796	87861886	+	4.04594	NA	Intergenic	CpG	-3428	NM_015021	23036	Hs.485892	NM_015021	ENSG00000188994	ZNF292	Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
19-PTNLD28-TUMOR_peak_34118	chr15	67357601	67357739	+	4.04518	NA	promoter-TSS (NM_005902)	promoter-TSS (NM_005902)	-525	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_34117	chr15	67342172	67342269	+	4.04518	NA	Intergenic	Intergenic	-15975	NM_005902	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_37615	chr16	46724025	46724115	+	4.04402	NA	promoter-TSS (NM_018206)	promoter-TSS (NM_018206)	512	NM_014321	23594	Hs.49760	NM_014321	HPRD:06237	ORC6	ORC6L	origin recognition complex, subunit 6	protein-coding
19-PTNLD28-TUMOR_peak_51752	chr2	27665531	27665906	+	4.04267	NA	TTS (NM_013392)	TTS (NM_013392)	485	NM_173853	200634	Hs.59509	NM_173853	HPRD:17254	KRTCAP3	KCP3|MRV222|PRO9898	keratinocyte associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_22327	chr11_gl000202_random	13059	13393	+	4.04267	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_4982	chr1	94522208	94522506	+	4.04267	NA	exon (NM_000350, exon 15 of 50)	exon (NM_000350, exon 15 of 50)	64348	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_46762	chr19	3986617	3986769	+	4.04267	NA	Intergenic	Intergenic	-1232	NM_001961	1938	Hs.515070	NM_001961	HPRD:00561	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
19-PTNLD28-TUMOR_peak_97774	chr8	26309435	26309523	+	4.03558	NA	Intergenic	Intergenic	62004	NM_007257	10687	Hs.591838	NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	paraneoplastic Ma antigen 2	protein-coding
19-PTNLD28-TUMOR_peak_37414	chr16	32352608	32352729	+	4.03525	NA	Intergenic	(CTAGGG)n|Simple_repeat|Simple_repeat	-51366	NR_033866	390705	Hs.278513	NR_033866		LOC390705	-	protein phosphatase 2, regulatory subunit B'', beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_75495	chr4	60167577	60167685	+	4.03321	NA	Intergenic	L1PA2|LINE|L1	-2191080	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_8972	chr1	192458394	192458525	+	4.03255	NA	Intergenic	Intergenic	-86398	NM_002922	5996	Hs.75256	NM_002922	HPRD:15968	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_9351	chr1	202555546	202555644	+	4.03219	NA	3' UTR (NM_032104, exon 13 of 13)	3' UTR (NM_032104, exon 13 of 13)	46353	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_11730	chr10	3800352	3800448	+	4.02883	NA	Intergenic	Intergenic	27073	NM_001300	1316	Hs.4055	NM_001300	HPRD:03632	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel-like factor 6	protein-coding
19-PTNLD28-TUMOR_peak_81815	chr5	122758652	122758776	+	4.02689	NA	5' UTR (NM_153223, exon 2 of 21)	5' UTR (NM_153223, exon 2 of 21)	572	NM_001166226	153241	Hs.483209	NM_153223	HPRD:08769	CEP120	CCDC100	centrosomal protein 120kDa	protein-coding
19-PTNLD28-TUMOR_peak_105008	chr9	103189308	103189398	+	4.02689	NA	promoter-TSS (NM_001198805)	promoter-TSS (NM_001198805)	-142	NM_080655	91283	Hs.530272	NM_080655		MSANTD3	C9orf30	Myb/SANT-like DNA-binding domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_8200	chr1	172321007	172321267	+	4.02478	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-68691	NM_139240	92346	Hs.517991	NM_139240	HPRD:14291	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
19-PTNLD28-TUMOR_peak_47719	chr19	15394513	15394601	+	4.02442	NA	Intergenic	Intergenic	-3295	NM_058243	23476	Hs.187763	NM_014299	HPRD:10574	BRD4	CAP|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_109997	chrX	153785450	153785554	+	4.02442	NA	intron (NM_001099856, intron 3 of 9)	MLT1C|LTR|ERVL-MaLR	9440	NM_003639	8517	Hs.43505	NM_003639	HPRD:02217	IKBKG	AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IP|IP1|IP2|IPD2|NEMO|ZC2HC9	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma	protein-coding
19-PTNLD28-TUMOR_peak_21650	chr11	120382366	120382472	+	4.02039	NA	promoter-TSS (NM_014619)	promoter-TSS (NM_014619)	-46	NM_014619	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_20067	chr11	75156561	75156667	+	4.02039	NA	intron (NM_030792, intron 9 of 16)	intron (NM_030792, intron 9 of 16)	-14940	NM_001039548	283212	Hs.292451	NM_173583	HPRD:08747	KLHL35	-	kelch-like family member 35	protein-coding
19-PTNLD28-TUMOR_peak_28836	chr13	100089300	100089447	+	4.02039	NA	Intergenic	Intergenic	-30819	NR_039765	100616144		NR_039765		MIR548AN	-	microRNA 548an	ncRNA
19-PTNLD28-TUMOR_peak_63636	chr21	42438620	42438708	+	4.02039	NA	Intergenic	Intergenic	81327	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
19-PTNLD28-TUMOR_peak_31671	chr14	91224572	91224665	+	4.01732	NA	intron (NM_001010854, intron 3 of 19)	intron (NM_001010854, intron 3 of 19)	58143	NM_001010854	145567	Hs.655697	NM_001010854	HPRD:18503	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
19-PTNLD28-TUMOR_peak_56515	chr2	159573661	159573760	+	4.01732	NA	Intergenic	MIR3|SINE|MIR	-78119	NM_001017920	92196	Hs.59761	NM_001017920	HPRD:18709	DAPL1	-	death associated protein-like 1	protein-coding
19-PTNLD28-TUMOR_peak_59885	chr20	14215435	14215563	+	4.01732	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	102814	NM_198391	23767	Hs.41296	NM_013281	HPRD:05313	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
19-PTNLD28-TUMOR_peak_68665	chr3	60876031	60876137	+	4.01732	NA	intron (NM_001166243, intron 3 of 9)	MLT1H1|LTR|ERVL-MaLR	361049	NM_002012	2272	Hs.655995	NM_002012	HPRD:03096	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding
19-PTNLD28-TUMOR_peak_1738	chr1	27390763	27390940	+	4.01732	NA	Intergenic	SVA_E|Other|Other	-51518	NM_052943	115572	Hs.632378	NM_052943	HPRD:16882	FAM46B	-	family with sequence similarity 46, member B	protein-coding
19-PTNLD28-TUMOR_peak_96159	chr7	148553520	148553608	+	4.01732	NA	intron (NM_001203248, intron 1 of 19)	L1MC3|LINE|L1	27037	NM_001203249	2146	Hs.444082	NM_004456	HPRD:03342	EZH2	ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_45123	chr18	29813691	29813805	+	4.01732	NA	Intergenic	L1PA3|LINE|L1	43761	NM_005925	4225	Hs.194777	NM_005925	HPRD:02667	MEP1B	-	meprin A, beta	protein-coding
19-PTNLD28-TUMOR_peak_103274	chr9	44172302	44172418	+	4.01732	NA	Intergenic	Intergenic	-212225	NR_121564	101927827	Hs.738704	NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
19-PTNLD28-TUMOR_peak_17948	chr11	33913045	33913134	+	4.01732	NA	intron (NM_005574, intron 1 of 5)	intron (NM_005574, intron 1 of 5)	747	NM_005574	4005	Hs.34560	NM_005574	HPRD:01586	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2 (rhombotin-like 1)	protein-coding
19-PTNLD28-TUMOR_peak_53123	chr2	65258798	65259012	+	4.01732	NA	Intergenic	Tigger8|DNA|TcMar-Tigger	-24590	NM_015147	23177	Hs.709257	NM_015147	HPRD:13808	CEP68	KIAA0582	centrosomal protein 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_83920	chr5	171247855	171247975	+	4.01732	NA	Intergenic	Intergenic	35039	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding
19-PTNLD28-TUMOR_peak_103371	chr9	46768813	46768951	+	4.01732	NA	intron (NR_046203, intron 2 of 4)	intron (NR_046203, intron 2 of 4)	5091	NR_046203	643648	Hs.640178	NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
19-PTNLD28-TUMOR_peak_104697	chr9	97153548	97153683	+	4.01732	NA	intron (NM_032558, intron 1 of 11)	AluJb|SINE|Alu	16782	NM_032558	84641	Hs.555996	NM_032558	HPRD:07869	HIATL1	-	hippocampus abundant transcript-like 1	protein-coding
19-PTNLD28-TUMOR_peak_11142	chr1	236344507	236344604	+	4.01732	NA	intron (NM_003272, intron 4 of 6)	intron (NM_003272, intron 4 of 6)	38723	NM_003272	7107	Hs.498160	NM_003272	HPRD:06878	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
19-PTNLD28-TUMOR_peak_69860	chr3	112946150	112946238	+	4.01500	NA	intron (NM_033254, intron 2 of 19)	intron (NM_033254, intron 2 of 19)	14819	NM_033254	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
19-PTNLD28-TUMOR_peak_31689	chr14	91764763	91764863	+	4.01500	NA	intron (NM_001080414, intron 21 of 29)	FRAM|SINE|Alu	-44589	NM_003485	8111	Hs.8882	NM_003485	HPRD:03241	GPR68	GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
19-PTNLD28-TUMOR_peak_13408	chr10	47663221	47663383	+	4.01500	NA	exon (NM_001278688, exon 2 of 17)	exon (NM_001278688, exon 2 of 17)	5069	NM_001278688	195977	Hs.538515	NM_001278688	ENSG00000198250	ANTXRL	-	anthrax toxin receptor-like	protein-coding
19-PTNLD28-TUMOR_peak_61110	chr20	39766357	39766445	+	4.01104	NA	exon (NM_002660, exon 1 of 32)	exon (NM_002660, exon 1 of 32)	239	NR_109889	101927117	Hs.668593	NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_85881	chr6	21595022	21595146	+	4.00652	NA	exon (NM_003107, exon 1 of 1)	exon (NM_003107, exon 1 of 1)	1112	NM_003107	6659	Hs.643910	NM_003107	HPRD:01695	SOX4	EVI16	SRY (sex determining region Y)-box 4	protein-coding
19-PTNLD28-TUMOR_peak_19614	chr11	68671923	68672090	+	4.00342	NA	promoter-TSS (NM_181515)	promoter-TSS (NM_181515)	687	NM_002180	3508	Hs.503048	NM_002180	HPRD:02736	IGHMBP2	CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7	immunoglobulin mu binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_14381	chr10	76868234	76868322	+	4.00342	NA	intron (NM_001007271, intron 1 of 7)	intron (NM_001007271, intron 1 of 7)	692	NM_001007271	51207	Hs.178170	NM_016364	HPRD:13251	DUSP13	BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP	dual specificity phosphatase 13	protein-coding
19-PTNLD28-TUMOR_peak_675	chr1	10310828	10310952	+	4.00342	NA	intron (NM_015074, intron 2 of 46)	AluJr|SINE|Alu	40126	NM_015074	23095	Hs.97858	NM_015074	HPRD:05818	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
19-PTNLD28-TUMOR_peak_45530	chr18	44701900	44702103	+	4.00146	NA	intron (NM_016097, intron 1 of 2)	AluSg|SINE|Alu	744	NM_016097	51124	Hs.130917	NM_016097	HPRD:13727	IER3IP1	MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_15644	chr10	112836449	112836604	+	4.00146	NA	promoter-TSS (NM_000681)	promoter-TSS (NM_000681)	-264	NM_000681	150	Hs.249159	NM_000681	HPRD:00078	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
19-PTNLD28-TUMOR_peak_24038	chr12	48290574	48290792	+	4.00146	NA	intron (NM_000376, intron 1 of 9)	intron (NM_000376, intron 1 of 9)	8131	NM_001017536	7421	Hs.524368	NM_000376	HPRD:03463	VDR	NR1I1|PPP1R163	vitamin D (1,25- dihydroxyvitamin D3) receptor	protein-coding
19-PTNLD28-TUMOR_peak_94163	chr7	98394860	98395127	+	3.99636	NA	Intergenic	Intergenic	72680	NM_001134451	222865	Hs.270753	NM_152913	HPRD:13226	TMEM130	-	transmembrane protein 130	protein-coding
19-PTNLD28-TUMOR_peak_17935	chr11	33795259	33795347	+	3.99568	NA	promoter-TSS (NR_120550)	promoter-TSS (NR_120550)	768	NM_012175	26273	Hs.406787	NM_012175	HPRD:16433	FBXO3	FBA|FBX3	F-box protein 3	protein-coding
19-PTNLD28-TUMOR_peak_89784	chr6	143718227	143718358	+	3.99568	NA	Intergenic	Intergenic	45522	NM_001286259	134637	Hs.709561	NM_182503		ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase, tRNA-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_11390	chr1	244350675	244350808	+	3.99320	NA	Intergenic	Intergenic	134234	NM_006352	10472	Hs.69997	NM_006352	HPRD:12231	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
19-PTNLD28-TUMOR_peak_14253	chr10	73724124	73724212	+	3.99320	NA	promoter-TSS (NM_004273)	promoter-TSS (NM_004273)	48	NM_004273	9469	Hs.158304	NM_004273	HPRD:07052	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_14038	chr10	71185711	71185846	+	3.99320	NA	Intergenic	Intergenic	-9104	NM_001057	6865	Hs.88372	NM_001057	HPRD:01207	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_22243	chr11	131300854	131300982	+	3.99320	NA	intron (NM_001048209, intron 1 of 7)	intron (NM_001048209, intron 1 of 7)	60547	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_15809	chr10	116698399	116698487	+	3.99320	NA	intron (NM_139169, intron 1 of 7)	intron (NM_139169, intron 1 of 7)	491	NM_139169	142940	Hs.21187	NM_139169	HPRD:18229	TRUB1	PUS4	TruB pseudouridine (psi) synthase family member 1	protein-coding
19-PTNLD28-TUMOR_peak_101349	chr8	140382708	140382796	+	3.99320	NA	Intergenic	L2a|LINE|L2	332547	NR_104210	51305	Hs.493037	NM_001282534	HPRD:16167	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium channel, subfamily K, member 9	protein-coding
19-PTNLD28-TUMOR_peak_15462	chr10	105727660	105727785	+	3.99320	NA	intron (NM_014720, intron 1 of 18)	intron (NM_014720, intron 1 of 18)	252	NM_014720	9748	Hs.591922	NM_014720	HPRD:11585	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20-like kinase	protein-coding
19-PTNLD28-TUMOR_peak_77152	chr4	139792255	139792375	+	3.99320	NA	Intergenic	Intergenic	-144598	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_58397	chr2	218938805	218938953	+	3.99320	NA	intron (NR_034176, intron 9 of 13)	intron (NR_034176, intron 9 of 13)	5141	NM_198483	285180	Hs.570069	NM_198483	HPRD:13539	RUFY4	-	RUN and FYVE domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_38619	chr16	71659996	71660102	+	3.99320	NA	promoter-TSS (NM_052858)	promoter-TSS (NM_052858)	-7	NM_001271329	91862	Hs.513706	NM_052858	HPRD:14365	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_73988	chr4	3487247	3487465	+	3.99305	NA	exon (NM_173660, exon 5 of 7)	exon (NM_173660, exon 5 of 7)	1085	NM_001256896	285489	Hs.122110	NM_173660	HPRD:08744	DOK7	C4orf25|CMS1B	docking protein 7	protein-coding
19-PTNLD28-TUMOR_peak_29164	chr13	114017931	114018044	+	3.98464	NA	intron (NM_001286732, intron 2 of 6)	CpG	476	NM_024719	79774	Hs.745043	NM_024719	HPRD:17080	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
19-PTNLD28-TUMOR_peak_59273	chr2	241782646	241782752	+	3.98464	NA	Intergenic	LTR10F|LTR|ERV1	-22974	NM_001244008	547	Hs.516802	NM_004321	HPRD:03156	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding
19-PTNLD28-TUMOR_peak_78723	chr5	3482816	3482904	+	3.98464	NA	intron (NR_033898, intron 2 of 4)	AluY|SINE|Alu	21258	NR_104618	102467075	Hs.652949	NR_104618		LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA
19-PTNLD28-TUMOR_peak_90753	chr7	648419	648638	+	3.98464	NA	TTS (NR_110054)	TTS (NR_110054)	5493	NR_110055	101926963	Hs.521338	NR_110054		LOC101926963	-	uncharacterized LOC101926963	ncRNA
19-PTNLD28-TUMOR_peak_56079	chr2	140980426	140980605	+	3.98464	NA	Intergenic	Intergenic	1325621	NR_033658	647012	Hs.639411	NR_033658		YY1P2	-	YY1 transcription factor pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_90359	chr6	160228601	160228693	+	3.98464	NA	intron (NM_173516, intron 7 of 18)	Charlie1a|DNA|hAT-Charlie	7366	NM_001271862	154197	Hs.349077	NM_173516	HPRD:17868	PNLDC1	-	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_39076	chr16	84310965	84311082	+	3.98464	NA	Intergenic	Intergenic	-17289	NM_021197	58189	Hs.36688	NM_021197	HPRD:05614	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
19-PTNLD28-TUMOR_peak_21792	chr11	123172649	123172737	+	3.98464	NA	Intergenic	CpG	79527	NR_039714	100616319		NR_039714	miRBase:MI0016855	MIR4493	-	microRNA 4493	ncRNA
19-PTNLD28-TUMOR_peak_40007	chr17	7644100	7644336	+	3.98464	NA	exon (NM_020877, exon 10 of 85)	exon (NM_020877, exon 10 of 85)	-13420	NR_002778	118432	Hs.658086	NR_002778		RPL29P2	RPL29_10_1510	ribosomal protein L29 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_47291	chr19	11161283	11161371	+	3.98464	NA	intron (NM_001128846, intron 28 of 32)	intron (NM_001128846, intron 28 of 32)	-38711	NM_001195799	3949	Hs.213289	NM_000527	HPRD:06091	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding
19-PTNLD28-TUMOR_peak_102013	chr9	4126662	4126823	+	3.98464	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	25441	NM_152629	169792	Hs.162125	NM_152629	HPRD:13582	GLIS3	ZNF515	GLIS family zinc finger 3	protein-coding
19-PTNLD28-TUMOR_peak_47632	chr19	14486090	14486285	+	3.98464	NA	Intergenic	Intergenic	-5769	NM_078481	976	Hs.466039	NM_001784	HPRD:03130	CD97	TM7LN1	CD97 molecule	protein-coding
19-PTNLD28-TUMOR_peak_89150	chr6	112543565	112543807	+	3.98464	NA	intron (NM_001105206, intron 2 of 38)	intron (NM_001105206, intron 2 of 38)	-14111	NR_121193	101927640	Hs.510007	NR_121193		LOC101927640	-	uncharacterized LOC101927640	ncRNA
19-PTNLD28-TUMOR_peak_65575	chr22	39716172	39716266	+	3.98303	NA	promoter-TSS (NM_000967)	promoter-TSS (NM_000967)	-549	NM_000967	6122	Hs.119598	NM_000967	HPRD:16042	RPL3	ASC-1|L3|TARBP-B	ribosomal protein L3	protein-coding
19-PTNLD28-TUMOR_peak_83151	chr5	149317340	149317428	+	3.98268	NA	intron (NM_000440, intron 1 of 21)	MIRb|SINE|MIR	-4844	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
19-PTNLD28-TUMOR_peak_64209	chr22	17640638	17640821	+	3.98165	NA	promoter-TSS (NM_033070)	promoter-TSS (NM_033070)	450	NR_024482	100130717	Hs.660066	NR_024482	ENSG00000185837	CECR5-AS1	CECR4|NCRNA00017	CECR5 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_73328	chr3	193789326	193789414	+	3.98165	NA	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	-64561	NM_005524	3280	Hs.250666	NM_005524	HPRD:00770	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
19-PTNLD28-TUMOR_peak_48010	chr19	18215568	18215670	+	3.97924	NA	intron (NM_015016, intron 1 of 26)	intron (NM_015016, intron 1 of 26)	-5993	NM_001290024	3594	Hs.567294	NM_005535	HPRD:03363	IL12RB1	CD212|IL-12R-BETA1|IL12RB	interleukin 12 receptor, beta 1	protein-coding
19-PTNLD28-TUMOR_peak_87086	chr6	36349724	36349825	+	3.97924	NA	intron (NM_001207040, intron 1 of 6)	intron (NM_001207040, intron 1 of 6)	5794	NM_001207038	51513	Hs.272398	NM_016135	HPRD:16095	ETV7	TEL-2|TEL2|TELB	ets variant 7	protein-coding
19-PTNLD28-TUMOR_peak_45293	chr18	35146156	35146244	+	3.97831	NA	promoter-TSS (NM_001025089)	promoter-TSS (NM_001025089)	-200	NM_020180	56853	Hs.435976	NM_020180	HPRD:12534	CELF4	BRUNOL-4|BRUNOL4	CUGBP, Elav-like family member 4	protein-coding
19-PTNLD28-TUMOR_peak_1817	chr1	28179995	28180132	+	3.97831	NA	Intergenic	SVA_F|Other|Other	-18991	NM_004848	9473	Hs.10649	NM_004848	HPRD:12728	THEMIS2	C1orf38|ICB-1	thymocyte selection associated family member 2	protein-coding
19-PTNLD28-TUMOR_peak_53412	chr2	71680628	71680860	+	3.97831	NA	promoter-TSS (NM_001130981)	promoter-TSS (NM_001130981)	-9	NM_001130981	8291	Hs.252180	NM_003494	HPRD:04307	DYSF	FER1L1|LGMD2B|MMD1	dysferlin	protein-coding
19-PTNLD28-TUMOR_peak_62442	chr20	59741454	59741542	+	3.97831	NA	Intergenic	Intergenic	-85984	NM_001794	1002	Hs.473231	NM_001794	HPRD:04304	CDH4	CAD4|R-CAD|RCAD	cadherin 4, type 1, R-cadherin (retinal)	protein-coding
19-PTNLD28-TUMOR_peak_32295	chr14	105266707	105266821	+	3.96855	NA	promoter-TSS (NM_001137601)	promoter-TSS (NM_001137601)	-169	NM_001137601	100128927	Hs.170853	NM_001137601		ZBTB42	ZNF925	zinc finger and BTB domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_48932	chr19	39210551	39210654	+	3.96632	NA	intron (NM_004924, intron 11 of 20)	intron (NM_004924, intron 11 of 20)	24512	NM_144691	147968	Hs.731775	NM_144691	HPRD:07007	CAPN12	-	calpain 12	protein-coding
19-PTNLD28-TUMOR_peak_81576	chr5	112299787	112299934	+	3.96614	NA	Intergenic	Intergenic	-12547	NR_038352	167227	Hs.443875	NM_152624	HPRD:13125	DCP2	NUDT20	decapping mRNA 2	protein-coding
19-PTNLD28-TUMOR_peak_8582	chr1	180881896	180882150	+	3.96614	NA	promoter-TSS (NM_020950)	promoter-TSS (NM_020950)	-290	NM_020950	57710	Hs.734816	NM_020950		KIAA1614	-	KIAA1614	protein-coding
19-PTNLD28-TUMOR_peak_75562	chr4	68018066	68018154	+	3.96614	NA	Intergenic	LTR12C|LTR|ERV1	269608	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
19-PTNLD28-TUMOR_peak_59134	chr2	239052439	239052544	+	3.96614	NA	intron (NM_198582, intron 3 of 7)	intron (NM_198582, intron 3 of 7)	5128	NM_198582	377007	Hs.591595	NM_198582	HPRD:13472	KLHL30	-	kelch-like family member 30	protein-coding
19-PTNLD28-TUMOR_peak_100609	chr8	125574443	125574531	+	3.96614	NA	intron (NM_001282974, intron 10 of 13)	intron (NM_001282974, intron 10 of 13)	23144	NM_001278645	4715	Hs.15977	NM_005005	HPRD:03264	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa	protein-coding
19-PTNLD28-TUMOR_peak_59280	chr2	241937993	241938081	+	3.96614	NA	promoter-TSS (NM_001080437)	promoter-TSS (NM_001080437)	-218	NM_001080437	25992	Hs.471834	NM_001080437	ENSG00000162804	SNED1	SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding
19-PTNLD28-TUMOR_peak_39052	chr16	84029508	84029714	+	3.96265	NA	intron (NM_019065, intron 8 of 12)	CpG	27374	NM_019065	54550	Hs.140950	NM_019065	HPRD:13263	NECAB2	EFCBP2	N-terminal EF-hand calcium binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_44074	chr17	80201006	80201130	+	3.96180	NA	non-coding (NR_110578, exon 9 of 9)	non-coding (NR_110578, exon 9 of 9)	6524	NR_106845	102465472		NR_106845		MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
19-PTNLD28-TUMOR_peak_87526	chr6	42710348	42710447	+	3.95898	NA	Intergenic	Intergenic	3487	NM_003192	6903	Hs.75064	NM_003192	HPRD:04276	TBCC	CFC	tubulin folding cofactor C	protein-coding
19-PTNLD28-TUMOR_peak_38254	chr16	66784459	66784547	+	3.95491	NA	intron (NM_001286157, intron 2 of 11)	intron (NM_001286157, intron 2 of 11)	1022	NM_006141	1783	Hs.369068	NM_006141	HPRD:09923	DYNC1LI2	DNCLI2|LIC2	dynein, cytoplasmic 1, light intermediate chain 2	protein-coding
19-PTNLD28-TUMOR_peak_62837	chr21	17209277	17209365	+	3.95491	NA	intron (NM_001283041, intron 17 of 25)	intron (NM_001283041, intron 17 of 25)	106977	NM_001283041	29761	Hs.743994	NM_013396	HPRD:05296	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
19-PTNLD28-TUMOR_peak_69533	chr3	105332166	105332282	+	3.95491	NA	Intergenic	Intergenic	246667	NM_001243280	214	Hs.591293	NM_001627	HPRD:03389	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
19-PTNLD28-TUMOR_peak_82116	chr5	131826089	131826237	+	3.95483	NA	intron (NM_002198, intron 1 of 9)	CpG	302	NM_002198	3659	Hs.436061	NM_002198	HPRD:00961	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
19-PTNLD28-TUMOR_peak_83740	chr5	167791387	167791523	+	3.95483	NA	intron (NM_015238, intron 1 of 22)	intron (NM_015238, intron 1 of 22)	72390	NM_001161662	23286	Hs.484047	NM_015238	HPRD:10033	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_49314	chr19	45092103	45092268	+	3.95274	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-24755	NM_001205280	147710	Hs.512509	NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily, member 23	protein-coding
19-PTNLD28-TUMOR_peak_35176	chr15	90588398	90588486	+	3.95274	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	43719	NM_198526	374655	Hs.459311	NM_198526	HPRD:13329	ZNF710	-	zinc finger protein 710	protein-coding
19-PTNLD28-TUMOR_peak_11640	chr10	1273385	1273524	+	3.95274	NA	intron (NM_018702, intron 6 of 9)	L1PA4|LINE|L1	67746	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
19-PTNLD28-TUMOR_peak_13806	chr10	62453086	62453262	+	3.95274	NA	intron (NM_001204403, intron 1 of 43)	L1PA3|LINE|L1	40110	NM_001204403	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_109299	chrX	118790307	118790572	+	3.95274	NA	intron (NM_145799, intron 3 of 10)	L2a|LINE|L2	-9628	NR_030413	768218		NR_030413		MIR766	MIRN766|hsa-mir-766	microRNA 766	ncRNA
19-PTNLD28-TUMOR_peak_33140	chr15	40368406	40368503	+	3.95274	NA	Intergenic	FAM|SINE|Alu	29833	NM_001003942	90427	Hs.591104	NM_033503	HPRD:05881	BMF	-	Bcl2 modifying factor	protein-coding
19-PTNLD28-TUMOR_peak_102732	chr9	33677046	33677136	+	3.95274	NA	promoter-TSS (NR_103745)	promoter-TSS (NR_103745)	-175	NR_103745	101243555	Hs.598470	NR_103745		PTENP1-AS	PTENP1as	PTENP1 antisense RNA	ncRNA
19-PTNLD28-TUMOR_peak_3881	chr1	60216227	60216327	+	3.95274	NA	intron (NM_001113411, intron 15 of 16)	intron (NM_001113411, intron 15 of 16)	-17309	NR_039861	100616409		NR_039861	miRBase:MI0017345	MIR4711	-	microRNA 4711	ncRNA
19-PTNLD28-TUMOR_peak_17583	chr11	19579330	19579499	+	3.95274	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	-17443	NR_039706	100616118		NR_039706		MIR4486	-	microRNA 4486	ncRNA
19-PTNLD28-TUMOR_peak_56356	chr2	153236953	153237255	+	3.95274	NA	intron (NM_052905, intron 1 of 25)	L2b|LINE|L2	45353	NM_052905	114793	Hs.654630	NM_052905	HPRD:13545	FMNL2	FHOD2	formin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_36098	chr16	7472293	7472393	+	3.95274	NA	intron (NM_145893, intron 1 of 13)	intron (NM_145893, intron 1 of 13)	89592	NM_145893	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_3549	chr1	53648056	53648144	+	3.94222	NA	Intergenic	Intergenic	-14001	NM_000098	1376	Hs.713535	NM_000098	HPRD:02802	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_22748	chr12	6472516	6472806	+	3.94222	NA	exon (NM_001159575, exon 3 of 13)	exon (NM_001159575, exon 3 of 13)	11729	NM_001159576	6337	Hs.591047	NM_001038	HPRD:02575	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel, non-voltage-gated 1 alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_87055	chr6	35887707	35887862	+	3.94185	NA	intron (NR_034069, intron 2 of 15)	intron (NR_034069, intron 2 of 15)	1173	NR_034069	6732	Hs.443861	NM_003137	HPRD:15992	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_54530	chr2	101679889	101680117	+	3.94185	NA	intron (NM_001102426, intron 2 of 19)	intron (NM_001102426, intron 2 of 19)	61312	NM_001098577	6160	Hs.469473	NM_000993	HPRD:17994	RPL31	L31	ribosomal protein L31	protein-coding
19-PTNLD28-TUMOR_peak_8311	chr1	174969667	174969798	+	3.94142	NA	intron (NM_014412, intron 1 of 5)	intron (NM_014412, intron 1 of 5)	840	NM_014412	27101	Hs.508524	NM_014412	HPRD:07316	CACYBP	GIG5|S100A6BP|SIP	calcyclin binding protein	protein-coding
19-PTNLD28-TUMOR_peak_49706	chr19	48976616	48976704	+	3.94142	NA	intron (NM_017457, intron 5 of 11)	intron (NM_017457, intron 5 of 11)	4195	NM_017457	9266	Hs.144011	NM_004228	HPRD:03925	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like	cytohesin 2	protein-coding
19-PTNLD28-TUMOR_peak_19187	chr11	64611898	64612077	+	3.93992	NA	promoter-TSS (NM_017525)	promoter-TSS (NM_017525)	54	NM_017525	55561	Hs.293590	NM_017525	HPRD:13013	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding
19-PTNLD28-TUMOR_peak_8159	chr1	171404029	171404247	+	3.93950	NA	Intergenic	Intergenic	-50528	NM_015172	23215	Hs.494614	NM_015172	HPRD:16539	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline-rich coiled-coil 2C	protein-coding
19-PTNLD28-TUMOR_peak_76887	chr4	122722162	122722250	+	3.93950	NA	promoter-TSS (NM_001034194)	promoter-TSS (NM_001034194)	-266	NM_005033	5393	Hs.91728	NM_005033	HPRD:07315	EXOSC9	PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
19-PTNLD28-TUMOR_peak_78769	chr5	6773549	6773655	+	3.93950	NA	Intergenic	Intergenic	27501	NM_001171806	11044	Hs.481542	NM_006999	HPRD:09239	PAPD7	LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	PAP associated domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_32367	chr14	105994844	105994932	+	3.93950	NA	intron (NM_025268, intron 1 of 1)	CpG	1935	NM_025268	80757	Hs.157527	NM_025268	HPRD:14652	TMEM121	hole	transmembrane protein 121	protein-coding
19-PTNLD28-TUMOR_peak_13873	chr10	64394976	64395089	+	3.93950	NA	intron (NM_199451, intron 5 of 7)	intron (NM_199451, intron 5 of 7)	114825	NM_199452	22891	Hs.22653	NM_014951	HPRD:06380	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
19-PTNLD28-TUMOR_peak_581	chr1	9256869	9257015	+	3.93950	NA	Intergenic	Intergenic	-37921	NM_004285	9563	Hs.463511	NM_004285	HPRD:00681	H6PD	CORTRD1|G6PDH|GDH	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding
19-PTNLD28-TUMOR_peak_70226	chr3	123337966	123338188	+	3.93950	NA	intron (NM_053025, intron 32 of 33)	intron (NM_053025, intron 32 of 33)	1453	NM_053031	4638	Hs.477375	NM_005965	HPRD:02952	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK	myosin light chain kinase	protein-coding
19-PTNLD28-TUMOR_peak_104236	chr9	87471355	87471443	+	3.93950	NA	intron (NM_001018064, intron 11 of 16)	intron (NM_001018064, intron 11 of 16)	186107	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_10930	chr1	233576777	233576894	+	3.93950	NA	Intergenic	Intergenic	113321	NM_032435	84451	Hs.547779	NM_032435	HPRD:10087	KIAA1804	MLK4|dJ862P8.3	mixed lineage kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_38620	chr16	71660499	71660587	+	3.93950	NA	exon (NM_052858, exon 1 of 3)	exon (NM_052858, exon 1 of 3)	487	NM_001017967	91862	Hs.513706	NM_052858	HPRD:14365	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_26514	chr12	117562877	117563051	+	3.93666	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	25692	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_68335	chr3	52279934	52280049	+	3.93666	NA	promoter-TSS (NM_001122870)	promoter-TSS (NM_001122870)	182	NM_144641	132160	Hs.373560	NM_144641	HPRD:12350	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent, 1M	protein-coding
19-PTNLD28-TUMOR_peak_33249	chr15	41785739	41785930	+	3.93199	NA	promoter-TSS (NM_002220)	promoter-TSS (NM_002220)	-222	NM_002220	3706	Hs.2722	NM_002220	HPRD:00941	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
19-PTNLD28-TUMOR_peak_38818	chr16	77370401	77370503	+	3.93199	NA	intron (NM_199355, intron 11 of 22)	intron (NM_199355, intron 11 of 22)	98559	NM_199355	170692	Hs.188746	NM_139054	HPRD:06333	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif, 18	protein-coding
19-PTNLD28-TUMOR_peak_7336	chr1	156595678	156595783	+	3.93199	NA	TTS (NM_021817)	TTS (NM_021817)	6644	NM_021817	60484	Hs.410719	NM_021817	HPRD:17088	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
19-PTNLD28-TUMOR_peak_86862	chr6	33581625	33581790	+	3.92998	NA	Intergenic	Intergenic	-7449	NM_002224	3710	Hs.65758	NM_002224	HPRD:00926	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_43142	chr17	66596671	66596759	+	3.92998	NA	exon (NM_017565, exon 1 of 11)	exon (NM_017565, exon 1 of 11)	380	NM_001243746	54757	Hs.268874	NM_017565		FAM20A	AI1G|AIGFS|FP2747	family with sequence similarity 20, member A	protein-coding
19-PTNLD28-TUMOR_peak_94493	chr7	101931000	101931175	+	3.92923	NA	intron (NM_020979, intron 1 of 6)	CpG	2734	NM_020979	10603	Hs.489448	NM_020979		SH2B2	APS	SH2B adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_18869	chr11	61275630	61275761	+	3.92366	NA	promoter-TSS (NM_001145077)	promoter-TSS (NM_001145077)	-373	NR_039708	100616470		NR_039708	miRBase:MI0016849	MIR4488	-	microRNA 4488	ncRNA
19-PTNLD28-TUMOR_peak_97679	chr8	23315382	23315516	+	3.92199	NA	promoter-TSS (NM_001128930)	promoter-TSS (NM_001128930)	-205	NM_001128930	9583	Hs.444389	NM_004901	HPRD:09618	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
19-PTNLD28-TUMOR_peak_41546	chr17	40713978	40714110	+	3.92199	NA	promoter-TSS (NM_025233)	promoter-TSS (NM_025233)	-48	NM_025233	80347	Hs.296422	NM_025233	HPRD:13080	COASY	DPCK|NBIA6|NBP|PPAT|UKR1|pOV-2	CoA synthase	protein-coding
19-PTNLD28-TUMOR_peak_104780	chr9	98636953	98637041	+	3.92153	NA	promoter-TSS (NM_001010895)	promoter-TSS (NM_001010895)	-903	NM_001010895	375748	Hs.432364	NM_020207	HPRD:17362	ERCC6L2	BMFS2|C9orf102|RAD26L|SR278	excision repair cross-complementation group 6-like 2	protein-coding
19-PTNLD28-TUMOR_peak_13875	chr10	64450767	64450865	+	3.92094	NA	Intergenic	Intergenic	-113700	NM_032804	84890	Hs.99821	NM_032804	HPRD:12566	ADO	C10orf22	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding
19-PTNLD28-TUMOR_peak_22981	chr12	9466275	9466413	+	3.92094	NA	non-coding (NR_024374, exon 22 of 22)	non-coding (NR_024374, exon 22 of 22)	30091	NR_024374	642846	Hs.447869	NR_024374	ENSG00000111788	LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
19-PTNLD28-TUMOR_peak_22392	chr12	821458	821547	+	3.92094	NA	Intergenic	MER4C|LTR|ERV1	-40587	NM_001184985	65125	Hs.744906	NM_014823	HPRD:05570	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_86336	chr6	28737655	28737743	+	3.92094	NA	Intergenic	HERVS71-int|LTR|ERV1	93755	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LOC401242	-	uncharacterized LOC401242	ncRNA
19-PTNLD28-TUMOR_peak_97871	chr8	27839195	27839513	+	3.92094	NA	intron (NM_173833, intron 2 of 8)	intron (NM_173833, intron 2 of 8)	11015	NM_173833	286133	Hs.591833	NM_173833	HPRD:11356	SCARA5	NET33|Tesr	scavenger receptor class A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_53738	chr2	85125608	85125725	+	3.92094	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-7097	NM_021103	9168	Hs.446574	NM_021103	HPRD:01779	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
19-PTNLD28-TUMOR_peak_59639	chr20	4700837	4700953	+	3.92094	NA	Intergenic	Intergenic	-1605	NM_012409	23627	Hs.406696	NM_012409	HPRD:05039	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion protein 2 (dublet)	protein-coding
19-PTNLD28-TUMOR_peak_100085	chr8	110314101	110314279	+	3.92094	NA	intron (NM_001128211, intron 2 of 9)	HERVH-int|LTR|ERV1	27972	NM_001128211	84955	Hs.380291	NM_032869	HPRD:16200	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72294	chr3	170626047	170626224	+	3.91364	NA	intron (NM_020390, intron 1 of 4)	CpG	291	NM_020390	56648	Hs.164144	NM_020390	HPRD:10426	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
19-PTNLD28-TUMOR_peak_10955	chr1	234040787	234040877	+	3.91364	NA	exon (NM_173508, exon 1 of 8)	exon (NM_173508, exon 1 of 8)	374	NM_173508	148641	Hs.158748	NM_173508	HPRD:15378	SLC35F3	-	solute carrier family 35, member F3	protein-coding
19-PTNLD28-TUMOR_peak_32062	chr14	100751037	100751131	+	3.91356	NA	Intergenic	Intergenic	7390	NR_106822	102466730		NR_106822		MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
19-PTNLD28-TUMOR_peak_19693	chr11	69655159	69655247	+	3.91293	NA	Intergenic	Intergenic	-21011	NM_005247	2248	Hs.37092	NM_005247		FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
19-PTNLD28-TUMOR_peak_42412	chr17	53847110	53847198	+	3.91293	NA	intron (NM_001102402, intron 2 of 5)	MLT1K|LTR|ERVL-MaLR	18688	NM_001102402	58488	Hs.285218	NM_021213	HPRD:06927	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
19-PTNLD28-TUMOR_peak_66421	chr3	9061432	9061523	+	3.91293	NA	intron (NM_001033117, intron 14 of 21)	MER91A|DNA|hAT-Tip100	-56318	NM_020165	56852	Hs.375684	NM_020165	HPRD:09242	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_64902	chr22	27602845	27602952	+	3.91293	NA	Intergenic	Intergenic	303643	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000223704	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
19-PTNLD28-TUMOR_peak_9369	chr1	202821554	202821714	+	3.91293	NA	Intergenic	Intergenic	-9248	NR_002929	148709	Hs.162880	NR_002929	ENSG00000234996	LOC148709	-	actin pseudogene	pseudo
19-PTNLD28-TUMOR_peak_82497	chr5	138401180	138401268	+	3.91293	NA	intron (NM_022464, intron 3 of 9)	intron (NM_022464, intron 3 of 9)	132841	NM_022464	64374	Hs.483521	NM_022464	HPRD:12150	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
19-PTNLD28-TUMOR_peak_32737	chr15	29131287	29131392	+	3.91293	NA	Intergenic	CpG	-37518	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	golgin A6 family-like 7, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_105056	chr9	104249569	104249740	+	3.90923	NA	promoter-TSS (NM_032342)	promoter-TSS (NM_032342)	-179	NM_032342	84302	Hs.655738	NM_032342		TMEM246	C9orf125	transmembrane protein 246	protein-coding
19-PTNLD28-TUMOR_peak_16691	chr11	2920670	2920797	+	3.90687	NA	promoter-TSS (NM_183233)	promoter-TSS (NM_183233)	-218	NM_183233	5002	Hs.50868	NM_002555	HPRD:04024	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22, member 18	protein-coding
19-PTNLD28-TUMOR_peak_63147	chr21	33103991	33104158	+	3.90687	NA	5' UTR (NM_001145445, exon 1 of 20)	5' UTR (NM_001145445, exon 1 of 20)	357	NM_001145445	57466	Hs.17255	NM_020706	HPRD:11551	SCAF4	SFRS15|SRA4	SR-related CTD-associated factor 4	protein-coding
19-PTNLD28-TUMOR_peak_64447	chr22	20460770	20460941	+	3.90598	NA	exon (NM_015672, exon 1 of 1)	exon (NM_015672, exon 1 of 1)	931	NM_015672	85376	Hs.115429	NM_015672	ENSG00000196622	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_5343	chr1	109643153	109643309	+	3.90598	NA	TTS (NR_003023)	TTS (NR_003023)	416	NR_003023	677766	Hs.550815	NR_003023	ENSG00000270066	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_19202	chr11	64738197	64738514	+	3.90382	NA	intron (NM_001300803, intron 1 of 8)	intron (NM_001300803, intron 1 of 8)	1208	NM_001300803	283129	Hs.567793	NM_001037225	HPRD:18761	C11orf85	-	chromosome 11 open reading frame 85	protein-coding
19-PTNLD28-TUMOR_peak_56711	chr2	163695046	163695225	+	3.90213	NA	5' UTR (NM_173162, exon 1 of 8)	5' UTR (NM_173162, exon 1 of 8)	122	NM_173162	90134	Hs.657413	NM_033272	HPRD:16295	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
19-PTNLD28-TUMOR_peak_96333	chr7	150757649	150757826	+	3.89956	NA	intron (NM_003040, intron 1 of 22)	intron (NM_003040, intron 1 of 22)	1080	NM_003040	6522	Hs.647069	NM_003040	HPRD:02728	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3	solute carrier family 4 (anion exchanger), member 2	protein-coding
19-PTNLD28-TUMOR_peak_40612	chr17	20407866	20407965	+	3.89745	NA	promoter-TSS (NR_029393)	promoter-TSS (NR_029393)	-104	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_70647	chr3	128446901	128446989	+	3.89173	NA	intron (NM_004637, intron 1 of 5)	L2b|LINE|L2	1966	NM_004637	7879	Hs.744853	NM_004637	HPRD:03805	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
19-PTNLD28-TUMOR_peak_74999	chr4	39448667	39448873	+	3.88928	NA	exon (NM_175737, exon 4 of 5)	exon (NM_175737, exon 4 of 5)	11437	NM_001024921	6133	Hs.412370	NM_000661	HPRD:04732	RPL9	L9|NPC-A-16	ribosomal protein L9	protein-coding
19-PTNLD28-TUMOR_peak_103596	chr9	69890202	69890314	+	3.88928	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-132474	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
19-PTNLD28-TUMOR_peak_36298	chr16	11466650	11466806	+	3.88928	NA	Intergenic	Intergenic	27417	NM_152308	116028	Hs.347524	NM_152308	HPRD:14497	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19-PTNLD28-TUMOR_peak_89504	chr6	133562426	133562578	+	3.88928	NA	promoter-TSS (NM_172103)	promoter-TSS (NM_172103)	7	NM_172105	2070	Hs.596680	NM_004100	HPRD:04648	EYA4	CMD1J|DFNA10	EYA transcriptional coactivator and phosphatase 4	protein-coding
19-PTNLD28-TUMOR_peak_89619	chr6	137561553	137561663	+	3.88928	NA	Intergenic	AluJr|SINE|Alu	-21041	NM_000416	3459	Hs.520414	NM_000416	HPRD:00127	IFNGR1	CD119|IFNGR	interferon gamma receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_13630	chr10	52795237	52795352	+	3.88928	NA	intron (NM_001098512, intron 1 of 17)	intron (NM_001098512, intron 1 of 17)	33018	NR_120678	102724719		NR_120678		LOC102724719	-	uncharacterized LOC102724719	ncRNA
19-PTNLD28-TUMOR_peak_98204	chr8	37612121	37612266	+	3.88928	NA	3' UTR (NM_007175, exon 12 of 12)	3' UTR (NM_007175, exon 12 of 12)	-6629	NR_003671	728024	Hs.647135	NR_003671		LOC728024	-	chromosome X open reading frame 56 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_55035	chr2	113494800	113494888	+	3.88928	NA	TTS (NM_152515)	TTS (NM_152515)	27410	NM_152515	150468	Hs.434250	NM_152515		CKAP2L	-	cytoskeleton associated protein 2-like	protein-coding
19-PTNLD28-TUMOR_peak_9570	chr1	204854620	204854810	+	3.88928	NA	intron (NM_001005388, intron 1 of 29)	intron (NM_001005388, intron 1 of 29)	56933	NM_001005388	23114	Hs.13349	NM_015090	HPRD:12372	NFASC	NF|NRCAML	neurofascin	protein-coding
19-PTNLD28-TUMOR_peak_4977	chr1	94491646	94491764	+	3.88928	NA	intron (NM_000350, intron 30 of 49)	intron (NM_000350, intron 30 of 49)	95000	NM_000350	24	Hs.416707	NM_000350	HPRD:03408	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
19-PTNLD28-TUMOR_peak_53611	chr2	75381347	75381474	+	3.88928	NA	intron (NM_015727, intron 1 of 3)	intron (NM_015727, intron 1 of 3)	45235	NM_015727	6869	Hs.633301	NM_001058	HPRD:01208	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_23172	chr12	13375132	13375364	+	3.88928	NA	Intergenic	MER115|DNA|hAT-Tip100	25646	NM_001423	2012	Hs.719042	NM_001423	HPRD:11892	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
19-PTNLD28-TUMOR_peak_33703	chr15	57853362	57853450	+	3.88928	NA	Intergenic	Intergenic	-30696	NR_104368	145781	Hs.437256	NM_001018090		GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding
19-PTNLD28-TUMOR_peak_73876	chr4	1880234	1880327	+	3.88928	NA	intron (NM_001042424, intron 1 of 21)	L2a|LINE|L2	7157	NM_001042424	7468	Hs.113876	NM_007331	HPRD:04259	WHSC1	MMSET|NSD2|REIIBP|TRX5|WHS	Wolf-Hirschhorn syndrome candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_6247	chr1	145039308	145039441	+	3.88893	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	621	NM_001198832	9659	Hs.584841	NM_014644	HPRD:10482	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_99413	chr8	86803427	86803553	+	3.88653	NA	non-coding (NR_003594, exon 1 of 1).8	non-coding (NR_003594, exon 1 of 1).8	107	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_76355	chr4	99583099	99583192	+	3.88653	NA	Intergenic	Intergenic	-3333	NM_005723	10098	Hs.118118	NM_005723	HPRD:15513	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
19-PTNLD28-TUMOR_peak_41984	chr17	45887661	45887749	+	3.88653	NA	intron (NM_145798, intron 18 of 22)	Charlie9|DNA|hAT-Charlie	11442	NM_145798	114881	Hs.463320	NM_017731	HPRD:09477	OSBPL7	ORP7	oxysterol binding protein-like 7	protein-coding
19-PTNLD28-TUMOR_peak_57816	chr2	202148126	202148318	+	3.88653	NA	intron (NR_111983, intron 7 of 8)	SVA_E|Other|Other	22999	NM_033356	841	Hs.599762	NM_001228	HPRD:03459	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_76746	chr4	119321198	119321308	+	3.88653	NA	Intergenic	SVA_A|Other|Other	-47331	NM_003619	8492	Hs.445857	NM_003619	HPRD:05989	PRSS12	BSSP-3|BSSP3|MRT1	protease, serine, 12 (neurotrypsin, motopsin)	protein-coding
19-PTNLD28-TUMOR_peak_340	chr1	6113109	6113197	+	3.88653	NA	intron (NM_001199862, intron 2 of 15)	intron (NM_001199862, intron 2 of 15)	6979	NM_001199863	8514	Hs.440497	NM_003636	HPRD:03090	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
19-PTNLD28-TUMOR_peak_48196	chr19	20348913	20349052	+	3.88653	NA	Intergenic	Intergenic	70959	NM_052852	90649	Hs.590991	NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
19-PTNLD28-TUMOR_peak_76702	chr4	114998114	114998310	+	3.88232	NA	Intergenic	HERVL40-int|LTR|ERVL	-97334	NM_024590	79642	Hs.22895	NM_024590	HPRD:08034	ARSJ	-	arylsulfatase family, member J	protein-coding
19-PTNLD28-TUMOR_peak_38324	chr16	67312783	67312901	+	3.87738	NA	promoter-TSS (NM_001129729)	promoter-TSS (NM_001129729)	-208	NM_001129728	25894	Hs.188781	NM_015432	HPRD:10890	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding
19-PTNLD28-TUMOR_peak_99405	chr8	86748550	86748698	+	3.87476	NA	promoter-TSS (NR_003594).4	promoter-TSS (NR_003594).4	97	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_99407	chr8	86757591	86757717	+	3.86875	NA	non-coding (NR_003594, exon 1 of 1).5	non-coding (NR_003594, exon 1 of 1).5	107	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_32462	chr15	20546354	20546568	+	3.86558	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	58464	NR_038836	646096	Hs.448789	NR_038836		CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_41146	chr17	34900441	34900532	+	3.86505	NA	promoter-TSS (NM_024835)	promoter-TSS (NM_024835)	-251	NM_024835	79893	Hs.514116	NM_024835	HPRD:18337	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
19-PTNLD28-TUMOR_peak_47625	chr19	14444495	14444583	+	3.86368	NA	Intergenic	CpG	-47417	NM_078481	976	Hs.466039	NM_001784	HPRD:03130	CD97	TM7LN1	CD97 molecule	protein-coding
19-PTNLD28-TUMOR_peak_52578	chr2	46688644	46688732	+	3.86368	NA	Intergenic	Intergenic	-18016	NM_001145051	388946	Hs.733348	NM_001145051	ENSG00000187600	TMEM247	-	transmembrane protein 247	protein-coding
19-PTNLD28-TUMOR_peak_30337	chr14	53619764	53619856	+	3.86220	NA	promoter-TSS (NR_110062)	promoter-TSS (NR_110062)	236	NM_001160147	80821	Hs.125525	NM_030637	HPRD:07482	DDHD1	PA-PLA1|PAPLA1|SPG28	DDHD domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_97800	chr8	26724451	26724649	+	3.86035	NA	Intergenic	CpG	-1628	NM_033303	148	Hs.709175	NM_000680	HPRD:00081	ADRA1A	ADRA1C|ADRA1L1|ALPHA1AAR	adrenoceptor alpha 1A	protein-coding
19-PTNLD28-TUMOR_peak_72611	chr3	180588171	180588264	+	3.86035	NA	promoter-TSS (NR_109986)	promoter-TSS (NR_109986)	-251	NR_109986	101928882	Hs.734668	NR_109986		LOC101928882	-	uncharacterized LOC101928882	ncRNA
19-PTNLD28-TUMOR_peak_66194	chr3	2494076	2494232	+	3.86035	NA	intron (NM_175607, intron 3 of 24)	intron (NM_175607, intron 3 of 24)	213641	NM_001206955	152330	Hs.298705	NM_175607	HPRD:16239	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
19-PTNLD28-TUMOR_peak_4618	chr1	85838435	85838625	+	3.86035	NA	intron (NM_001134445, intron 2 of 6)	intron (NM_001134445, intron 2 of 6)	92359	NM_012137	23576	Hs.713411	NM_012137	HPRD:09203	DDAH1	DDAH|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
19-PTNLD28-TUMOR_peak_29034	chr13	110522402	110522495	+	3.86035	NA	Intergenic	Intergenic	-83534	NM_003749	8660	Hs.442344	NM_003749	HPRD:02878	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
19-PTNLD28-TUMOR_peak_30442	chr14	55816361	55816453	+	3.85853	NA	intron (NM_152231, intron 1 of 1)	AluSz6|SINE|Alu	62169	NM_014924	22863	Hs.414809	NM_014924	HPRD:13820	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
19-PTNLD28-TUMOR_peak_75999	chr4	83445994	83446231	+	3.85853	NA	intron (NM_001080506, intron 1 of 7)	intron (NM_001080506, intron 1 of 7)	37014	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	-	transmembrane protein 150C	protein-coding
19-PTNLD28-TUMOR_peak_78627	chr5	982657	982745	+	3.85853	NA	Intergenic	Intergenic	14754	NR_104614	100506688	Hs.532063	NM_001242737		LOC100506688	-	uncharacterized LOC100506688	ncRNA
19-PTNLD28-TUMOR_peak_30891	chr14	68133836	68134076	+	3.85853	NA	intron (NM_006370, intron 1 of 5)	intron (NM_006370, intron 1 of 5)	7646	NM_006370	10490	Hs.741177	NM_006370	HPRD:04440	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
19-PTNLD28-TUMOR_peak_91459	chr7	19787485	19787573	+	3.85853	NA	intron (NM_152774, intron 1 of 3)	intron (NM_152774, intron 1 of 3)	24875	NM_152774	256130	Hs.487670	NM_152774	HPRD:14617	TMEM196	-	transmembrane protein 196	protein-coding
19-PTNLD28-TUMOR_peak_109062	chrX	105040911	105041034	+	3.85853	NA	Intergenic	L1PA3|LINE|L1	-25564	NM_198465	203447	Hs.209527	NM_198465	HPRD:14841	NRK	NESK	Nik related kinase	protein-coding
19-PTNLD28-TUMOR_peak_102427	chr9	20981549	20981637	+	3.85853	NA	exon (NM_017794, exon 40 of 46)	exon (NM_017794, exon 40 of 46)	50042	NM_001010915	401494	Hs.716678	NM_001010915		PTPLAD2	HACD4	protein tyrosine phosphatase-like A domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_46657	chr19	2462966	2463216	+	3.85853	NA	Intergenic	Intergenic	-6125	NM_032737	84823	Hs.538286	NM_032737	HPRD:01037	LMNB2	LAMB2|LMN2	lamin B2	protein-coding
19-PTNLD28-TUMOR_peak_1062	chr1	16485627	16485720	+	3.84938	NA	Intergenic	Intergenic	-3091	NM_004431	1969	Hs.171596	NM_004431	HPRD:01494	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
19-PTNLD28-TUMOR_peak_43057	chr17	65417253	65417381	+	3.84938	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	43920	NM_012417	26207	Hs.591185	NM_012417	HPRD:05504	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_68180	chr3	50126504	50126592	+	3.84938	NA	intron (NR_036627, intron 1 of 23)	CpG	207	NR_036627	10181	Hs.439480	NM_005778	HPRD:06052	RBM5	G15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
19-PTNLD28-TUMOR_peak_47962	chr19	17942151	17942257	+	3.84799	NA	exon (NM_000215, exon 21 of 24)	exon (NM_000215, exon 21 of 24)	-9821	NM_005543	3640	Hs.37062	NM_005543	HPRD:08854	INSL3	RLF|RLNL|ley-I-L	insulin-like 3 (Leydig cell)	protein-coding
19-PTNLD28-TUMOR_peak_70411	chr3	125325525	125325658	+	3.84311	NA	Intergenic	HERV9-int|LTR|ERV1	-11210	NM_022776	114885	Hs.477440	NM_022776	HPRD:09481	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein-like 11	protein-coding
19-PTNLD28-TUMOR_peak_45077	chr18	28627057	28627173	+	3.84147	NA	Intergenic	Intergenic	-4334	NM_024423	1825	Hs.41690	NM_001941	HPRD:02604	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
19-PTNLD28-TUMOR_peak_9203	chr1	201317563	201317651	+	3.84147	NA	Intergenic	Intergenic	29221	NM_001276346	7139	Hs.533613	NM_000364	HPRD:01844	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T type 2 (cardiac)	protein-coding
19-PTNLD28-TUMOR_peak_18873	chr11	61319507	61319747	+	3.84147	NA	intron (NM_001300773, intron 2 of 9)	intron (NM_001300773, intron 2 of 9)	28717	NM_004200	9066	Hs.131188	NM_004200		SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin VII	protein-coding
19-PTNLD28-TUMOR_peak_35198	chr15	90809417	90809637	+	3.84147	NA	promoter-TSS (NR_102428)	promoter-TSS (NR_102428)	-536	NR_102428	10519	Hs.715556	NM_006384		CIB1	CIB|CIBP|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1 (calmyrin)	protein-coding
19-PTNLD28-TUMOR_peak_102680	chr9	33170911	33171058	+	3.84084	NA	intron (NR_108108, intron 1 of 3)	intron (NR_108108, intron 1 of 3)	3127	NR_108108	101929639	Hs.545818	NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_66893	chr3	15347159	15347324	+	3.83479	NA	intron (NM_001018009, intron 2 of 8)	L2b|LINE|L2	26895	NM_004844	9467	Hs.257761	NM_004844	HPRD:12030	SH3BP5	SAB|SH3BP-5	SH3-domain binding protein 5 (BTK-associated)	protein-coding
19-PTNLD28-TUMOR_peak_52713	chr2	48782753	48782919	+	3.83440	NA	intron (NM_001198595, intron 2 of 4)	SVA_F|Other|Other	-13323	NM_172311	286749	Hs.732016	NM_172311	HPRD:18496	STON1-GTF2A1L	SALF	STON1-GTF2A1L readthrough	protein-coding
19-PTNLD28-TUMOR_peak_92762	chr7	61067792	61067973	+	3.83440	NA	Intergenic	Intergenic	1696552	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_35070	chr15	87422197	87422330	+	3.83440	NA	intron (NM_152336, intron 22 of 23)	intron (NM_152336, intron 22 of 23)	-562064	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_31810	chr14	94393633	94393747	+	3.83440	NA	promoter-TSS (NM_001207073)	promoter-TSS (NM_001207073)	1	NM_001207073	90050	Hs.525550	NM_138344	HPRD:12636	FAM181A	C14orf152	family with sequence similarity 181, member A	protein-coding
19-PTNLD28-TUMOR_peak_10820	chr1	231175582	231175736	+	3.83440	NA	intron (NM_198552, intron 1 of 1)	CpG	336	NM_198552	375061	Hs.38516	NM_198552	HPRD:11845	FAM89A	C1orf153	family with sequence similarity 89, member A	protein-coding
19-PTNLD28-TUMOR_peak_90879	chr7	2098178	2098267	+	3.83440	NA	intron (NM_001013836, intron 12 of 18)	GA-rich|Low_complexity|Low_complexity	174361	NM_003550	8379	Hs.654838	NM_003550	HPRD:04065	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_78713	chr5	2491264	2491353	+	3.83440	NA	Intergenic	Intergenic	-178993	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
19-PTNLD28-TUMOR_peak_87066	chr6	36095380	36095502	+	3.83343	NA	Intergenic	Intergenic	-2820	NR_072996	5603	Hs.178695	NM_002754	HPRD:09113	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
19-PTNLD28-TUMOR_peak_48935	chr19	39225469	39225660	+	3.82822	NA	intron (NM_144691, intron 14 of 20)	L2b|LINE|L2	9550	NM_144691	147968	Hs.731775	NM_144691	HPRD:07007	CAPN12	-	calpain 12	protein-coding
19-PTNLD28-TUMOR_peak_14113	chr10	72056412	72056564	+	3.82762	NA	Intergenic	Intergenic	-13038	NM_022146	64106	Hs.302026	NM_022146		NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_55111	chr2	114216521	114216620	+	3.82762	NA	intron (NM_172003, intron 6 of 14)	L2a|LINE|L2	21302	NM_172003	150472	Hs.531330	NM_172003	HPRD:16687	CBWD2	-	COBW domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_79815	chr5	50947478	50947649	+	3.82762	NA	Intergenic	Intergenic	-268397	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
19-PTNLD28-TUMOR_peak_89635	chr6	138029176	138029291	+	3.82762	NA	Intergenic	Intergenic	30941	NR_121618	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_79724	chr5	43192243	43192423	+	3.82762	NA	promoter-TSS (NR_072980)	promoter-TSS (NR_072980)	163	NM_153361	167359	Hs.25845	NM_153361	HPRD:14618	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
19-PTNLD28-TUMOR_peak_54175	chr2	95403107	95403297	+	3.82762	NA	Intergenic	Intergenic	23727	NR_038409	90499	Hs.458439	NR_038409		FAM95A	-	family with sequence similarity 95, member A	ncRNA
19-PTNLD28-TUMOR_peak_71505	chr3	145907479	145907577	+	3.82762	NA	Intergenic	Intergenic	-28246	NM_182943	5352	Hs.477866	NM_000935	HPRD:03519	PLOD2	LH2|TLH	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
19-PTNLD28-TUMOR_peak_6462	chr1	147305437	147305579	+	3.82762	NA	Intergenic	L1PB1|LINE|L1	-60042	NM_005266	2702	Hs.447968	NM_005266	HPRD:08699	GJA5	ATFB11|CX40	gap junction protein, alpha 5, 40kDa	protein-coding
19-PTNLD28-TUMOR_peak_16497	chr11	636964	637304	+	3.82762	NA	promoter-TSS (NM_000797)	promoter-TSS (NM_000797)	-171	NM_000797	1815	Hs.99922	NM_000797	HPRD:00541	DRD4	D4DR	dopamine receptor D4	protein-coding
19-PTNLD28-TUMOR_peak_36590	chr16	18913160	18913248	+	3.82762	NA	intron (NM_015092, intron 1 of 62)	AluSx1|SINE|Alu	24522	NM_015092	23049	Hs.460179	NM_015092	HPRD:06123	SMG1	61E3.4|ATX|LIP	SMG1 phosphatidylinositol 3-kinase-related kinase	protein-coding
19-PTNLD28-TUMOR_peak_89633	chr6	138018635	138018852	+	3.82762	NA	Intergenic	Intergenic	41431	NR_121618	100507406	Hs.556703	NR_121618	ENSG00000234956	LOC100507406	-	uncharacterized LOC100507406	ncRNA
19-PTNLD28-TUMOR_peak_50714	chr2	124610	124774	+	3.82300	NA	Intergenic	Intergenic	-78104	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_92836	chr7	63774544	63774666	+	3.81923	NA	intron (NM_001170905, intron 1 of 3)	intron (NM_001170905, intron 1 of 3)	354	NM_001170905	728927	Hs.386162	NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
19-PTNLD28-TUMOR_peak_101860	chr9	74241	74329	+	3.81923	NA	intron (NR_121188, intron 2 of 2)	intron (NR_121188, intron 2 of 2)	1595	NR_121188	101929127	Hs.552787	NR_121188		PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_32545	chr15	22692737	22692929	+	3.81923	NA	Intergenic	CpG	-17592	NR_039732	100616223		NR_039732	miRBase:MI0016873	MIR4509-1	-	microRNA 4509-1	ncRNA
19-PTNLD28-TUMOR_peak_60987	chr20	37456626	37456727	+	3.81923	NA	intron (NM_015568, intron 1 of 10)	intron (NM_015568, intron 1 of 10)	22328	NM_001172735	26051	Hs.45719	NM_015568	HPRD:15168	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1, regulatory subunit 16B	protein-coding
19-PTNLD28-TUMOR_peak_1642	chr1	26362278	26362453	+	3.81893	NA	3' UTR (NM_004455, exon 11 of 11)	3' UTR (NM_004455, exon 11 of 11)	10239	NM_001004434	7780	Hs.143545	NM_032513	HPRD:18057	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 (zinc transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_1111	chr1	16974025	16974154	+	3.81600	NA	intron (NR_027504, intron 6 of 13)	CpG-513	2020	NR_027504	11209	Hs.349110	NR_027504	ENSG00000186301	MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2	pseudo
19-PTNLD28-TUMOR_peak_10947	chr1	233855894	233856031	+	3.80865	NA	Intergenic	Intergenic	96064	NR_039625	100616390		NR_039625		MIR4427	-	microRNA 4427	ncRNA
19-PTNLD28-TUMOR_peak_11327	chr1	242168561	242168649	+	3.80865	NA	Intergenic	Intergenic	-6220	NM_001004343	440738	Hs.534971	NM_001004343	HPRD:14226	MAP1LC3C	ATG8J|LC3C	microtubule-associated protein 1 light chain 3 gamma	protein-coding
19-PTNLD28-TUMOR_peak_91799	chr7	29390058	29390146	+	3.80865	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-129226	NM_001293076	1124	Hs.654611	NM_004067	HPRD:04173	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
19-PTNLD28-TUMOR_peak_103175	chr9	41549333	41549427	+	3.80865	NA	Intergenic	Intergenic	33326	NR_110999	653123		NR_110999		FAM74A6	-	family with sequence similarity 74, member A6	ncRNA
19-PTNLD28-TUMOR_peak_759	chr1	11394493	11394592	+	3.80865	NA	Intergenic	Intergenic	61287	NM_013319	29914	Hs.522933	NM_013319	HPRD:15487	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_98293	chr8	38728413	38728501	+	3.80865	NA	Intergenic	Intergenic	-30296	NM_021623	59339	Hs.369123	NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	protein-coding
19-PTNLD28-TUMOR_peak_68234	chr3	50563502	50563668	+	3.80865	NA	Intergenic	Intergenic	-21910	NM_001291101	9254	Hs.476273	NM_006030	HPRD:06154	CACNA2D2	CACNA2D	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding
19-PTNLD28-TUMOR_peak_20027	chr11	74466048	74466190	+	3.80865	NA	intron (NM_001098638, intron 1 of 5)	intron (NM_001098638, intron 1 of 5)	6206	NM_001098638	254225	Hs.370145	NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
19-PTNLD28-TUMOR_peak_25395	chr12	77458967	77459080	+	3.80865	NA	intron (NM_203394, intron 1 of 12)	CpG	337	NM_203394	144455	Hs.416375	NM_203394	HPRD:10929	E2F7	-	E2F transcription factor 7	protein-coding
19-PTNLD28-TUMOR_peak_82015	chr5	128796038	128796126	+	3.80865	NA	promoter-TSS (NM_133638)	promoter-TSS (NM_133638)	-21	NM_133638	171019	Hs.23751	NM_133638	HPRD:06334	ADAMTS19	-	ADAM metallopeptidase with thrombospondin type 1 motif, 19	protein-coding
19-PTNLD28-TUMOR_peak_34159	chr15	68347831	68347943	+	3.80865	NA	intron (NM_016166, intron 1 of 13)	intron (NM_016166, intron 1 of 13)	1315	NM_016166	8554	Hs.162458	NM_016166	HPRD:16029	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT, 1	protein-coding
19-PTNLD28-TUMOR_peak_70373	chr3	124842388	124842611	+	3.80425	NA	intron (NM_024628, intron 6 of 13)	THE1B|LTR|ERVL-MaLR	27897	NR_049815	100847039		NR_049815		MIR5092	-	microRNA 5092	ncRNA
19-PTNLD28-TUMOR_peak_31614	chr14	89883507	89883649	+	3.80336	NA	promoter-TSS (NR_036500)	promoter-TSS (NR_036500)	-120	NR_036500	400236	Hs.585207	NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_61928	chr20	50180415	50180503	+	3.80336	NA	Intergenic	Intergenic	-1089	NM_001258294	4773	Hs.744148	NM_012340	HPRD:02730	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	protein-coding
19-PTNLD28-TUMOR_peak_71774	chr3	151986595	151986769	+	3.80177	NA	non-coding (NR_027038, exon 2 of 2)	non-coding (NR_027038, exon 2 of 2)	733	NR_027038	401093	Hs.725347	NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_98573	chr8	46845192	46845398	+	3.80009	NA	Intergenic	ALR/Alpha|Satellite|centr	-907213	NR_027012	497634	Hs.406982	NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	ncRNA
19-PTNLD28-TUMOR_peak_76611	chr4	111539309	111539420	+	3.79993	NA	exon (NM_153426, exon 6 of 6)	exon (NM_153426, exon 6 of 6)	4890	NM_000325	5308	Hs.643588	NM_000325	HPRD:03328	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired-like homeodomain 2	protein-coding
19-PTNLD28-TUMOR_peak_44709	chr18	13380373	13380542	+	3.79993	NA	intron (NM_181482, intron 2 of 5)	intron (NM_181482, intron 2 of 5)	47076	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_88012	chr6	53223648	53223776	+	3.79738	NA	Intergenic	AluJo|SINE|Alu	-9735	NM_001242828	60481	Hs.520189	NM_021814	HPRD:13268	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
19-PTNLD28-TUMOR_peak_13617	chr10	52383685	52383773	+	3.79738	NA	promoter-TSS (NM_147156)	promoter-TSS (NM_147156)	8	NM_147156	259230	Hs.654698	NM_147156	HPRD:18203	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_109043	chrX	103560359	103560447	+	3.79708	NA	Intergenic	Intergenic	-60804	NM_153448	80712	Hs.223782	NM_153448	HPRD:06503	ESX1	ESX1L|ESXR1	ESX homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_93417	chr7	75247081	75247258	+	3.79708	NA	intron (NM_005338, intron 1 of 30)	intron (NM_005338, intron 1 of 30)	-89716	NR_028059	5387	Hs.659871	NM_005395	HPRD:17866	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	postmeiotic segregation increased 2 pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_17767	chr11	28841896	28842148	+	3.79708	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-342927	NR_107035	102466876		NR_107035		MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
19-PTNLD28-TUMOR_peak_64619	chr22	22636641	22636765	+	3.79708	NA	Intergenic	L1PA3|LINE|L1	-15760	NR_027293	96610	Hs.449601	NM_080926	HPRD:14302	BMS1P20	-	BMS1 pseudogene 20	pseudo
19-PTNLD28-TUMOR_peak_64002	chr21	46331335	46331440	+	3.79708	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	-9563	NR_038315	100505746	Hs.661035	NR_038311	ENSG00000227039	ITGB2-AS1	-	ITGB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_104006	chr9	80377119	80377216	+	3.79708	NA	intron (NM_002072, intron 5 of 6)	SVA_D|Other|Other	-113935	NM_004297	9630	Hs.657795	NM_004297	HPRD:05095	GNA14	-	guanine nucleotide binding protein (G protein), alpha 14	protein-coding
19-PTNLD28-TUMOR_peak_67850	chr3	45196209	45196353	+	3.79708	NA	Intergenic	Intergenic	-8367	NM_178181	64866	Hs.476093	NM_022842	HPRD:16696	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
19-PTNLD28-TUMOR_peak_2559	chr1	38492442	38492530	+	3.79708	NA	Intergenic	Intergenic	14102	NM_016037	51118	Hs.472038	NM_016037	HPRD:16711	UTP11L	CGI94	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_98402	chr8	41485027	41485302	+	3.79708	NA	Intergenic	Intergenic	19714	NM_152568	157848	Hs.647132	NM_152568		NKX6-3	NKX6.3	NK6 homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_97315	chr8	17021067	17021205	+	3.79708	NA	intron (NM_016353, intron 1 of 12)	MamRep564|Unknown|Unknown	7300	NM_016353	51201	Hs.744097	NM_016353		ZDHHC2	DHHC2|ZNF372	zinc finger, DHHC-type containing 2	protein-coding
19-PTNLD28-TUMOR_peak_99354	chr8	82753977	82754187	+	3.79708	NA	intron (NM_022133, intron 1 of 8)	CpG	439	NM_152837	64089	Hs.492121	NM_022133	HPRD:15411	SNX16	-	sorting nexin 16	protein-coding
19-PTNLD28-TUMOR_peak_24047	chr12	48394848	48394977	+	3.79708	NA	intron (NM_001844, intron 1 of 53)	intron (NM_001844, intron 1 of 53)	3373	NM_001844	1280	Hs.408182	NM_001844	HPRD:00361	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen, type II, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_66769	chr3	13824037	13824205	+	3.79708	NA	Intergenic	L2a|LINE|L2	97497	NM_004625	7476	Hs.72290	NM_004625		WNT7A	-	wingless-type MMTV integration site family, member 7A	protein-coding
19-PTNLD28-TUMOR_peak_99418	chr8	86827813	86827928	+	3.79594	NA	Intergenic	CpG	-12080	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_106283	chr9	131315086	131315207	+	3.79112	NA	intron (NM_001195532, intron 1 of 54)	CpG	309	NM_003127	6709	Hs.372331	NM_003127	HPRD:01684	SPTAN1	EIEE5|NEAS|SPTA2	spectrin, alpha, non-erythrocytic 1	protein-coding
19-PTNLD28-TUMOR_peak_3014	chr1	43997381	43997605	+	3.78588	NA	intron (NM_130440, intron 1 of 32)	CpG	946	NM_130440	5792	Hs.272062	NM_002840	HPRD:01552	PTPRF	LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
19-PTNLD28-TUMOR_peak_8787	chr1	183839706	183839801	+	3.78397	NA	intron (NM_001297671, intron 4 of 17)	MER48|LTR|ERV1	65538	NM_001297672	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
19-PTNLD28-TUMOR_peak_54997	chr2	112897259	112897379	+	3.78397	NA	intron (NM_153214, intron 1 of 7)	CpG	1357	NM_153214	129804	Hs.437696	NM_153214	HPRD:08783	FBLN7	TM14	fibulin 7	protein-coding
19-PTNLD28-TUMOR_peak_78842	chr5	9623377	9623584	+	3.78397	NA	Intergenic	Intergenic	6983	NM_019599	50834	Hs.567492	NM_019599	HPRD:07267	TAS2R1	T2R1|TRB7	taste receptor, type 2, member 1	protein-coding
19-PTNLD28-TUMOR_peak_100101	chr8	110747625	110747713	+	3.78327	NA	Intergenic	Intergenic	-43649	NM_001099743	55638	Hs.390738	NM_017786	HPRD:07902	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin (syntaxin-interacting)	protein-coding
19-PTNLD28-TUMOR_peak_86244	chr6	27640060	27640358	+	3.78327	NA	Intergenic	Intergenic	-21605	NR_038293	100507173	Hs.635987	NR_038292		LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19-PTNLD28-TUMOR_peak_89550	chr6	134962234	134962349	+	3.78327	NA	Intergenic	Intergenic	202763	NR_038218	154092	Hs.223718	NR_038216		LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
19-PTNLD28-TUMOR_peak_78872	chr5	10251099	10251191	+	3.77875	NA	intron (NM_012073, intron 1 of 10)	intron (NM_012073, intron 1 of 10)	863	NM_012073	22948	Hs.1600	NM_012073	HPRD:06468	CCT5	CCT-epsilon|CCTE|HEL-S-69|TCP-1-epsilon	chaperonin containing TCP1, subunit 5 (epsilon)	protein-coding
19-PTNLD28-TUMOR_peak_106294	chr9	131446735	131446842	+	3.77551	NA	promoter-TSS (NM_001248000)	promoter-TSS (NM_001248000)	-577	NM_001248000	6418	Hs.436687	NM_003011	HPRD:09023	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
19-PTNLD28-TUMOR_peak_7566	chr1	159979706	159979794	+	3.77514	NA	Intergenic	Intergenic	22033	NM_145167	93183	Hs.552810	NM_145167	HPRD:15133	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding
19-PTNLD28-TUMOR_peak_19854	chr11	71906589	71906694	+	3.77514	NA	intron (NM_016724, intron 4 of 5)	intron (NM_016724, intron 4 of 5)	3468	NM_016729	2348	Hs.73769	NM_000802	HPRD:00638	FOLR1	FBP|FOLR	folate receptor 1 (adult)	protein-coding
19-PTNLD28-TUMOR_peak_10120	chr1	220011226	220011326	+	3.77514	NA	Intergenic	Intergenic	-35343	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
19-PTNLD28-TUMOR_peak_19688	chr11	69536716	69536827	+	3.76680	NA	Intergenic	Intergenic	-17665	NM_005117	9965	Hs.249200	NM_005117	HPRD:04868	FGF19	-	fibroblast growth factor 19	protein-coding
19-PTNLD28-TUMOR_peak_50654	chr1_gl000192_random	92608	92785	+	3.76680	NA	Intergenic	L1MD1|LINE|L1	314814	NR_103556	100288805	Hs.648712	NR_049745		HYDIN2	HYDINP1	HYDIN2, axonemal central pair apparatus protein (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_1174	chr1	17909042	17909162	+	3.76680	NA	intron (NM_001011722, intron 1 of 26)	L2b|LINE|L2	2054	NM_001011722	55160	Hs.443460	NM_018125	HPRD:07679	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
19-PTNLD28-TUMOR_peak_51147	chr2	11679651	11679814	+	3.76680	NA	promoter-TSS (NM_148903)	promoter-TSS (NM_148903)	-348	NM_148903	9687	Hs.467733	NM_014668	HPRD:13611	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
19-PTNLD28-TUMOR_peak_90741	chr7	492249	492430	+	3.76680	NA	Intergenic	CpG	67142	NM_002607	5154	Hs.535898	NM_002607	HPRD:01424	PDGFA	PDGF-A|PDGF1	platelet-derived growth factor alpha polypeptide	protein-coding
19-PTNLD28-TUMOR_peak_26804	chr12	122396516	122396681	+	3.76680	NA	intron (NM_001178003, intron 12 of 17)	intron (NM_001178003, intron 12 of 17)	40135	NM_001178003	144406	Hs.709837	NM_144668	HPRD:14570	WDR66	CaM-IP4	WD repeat domain 66	protein-coding
19-PTNLD28-TUMOR_peak_28852	chr13	100632653	100632862	+	3.76680	NA	Intergenic	CpG	-1269	NM_007129	7546	Hs.653700	NM_007129	HPRD:04353	ZIC2	HPE5	Zic family member 2	protein-coding
19-PTNLD28-TUMOR_peak_34380	chr15	72522642	72522801	+	3.76644	NA	promoter-TSS (NM_001206799)	promoter-TSS (NM_001206799)	-658	NM_001206799	5315	Hs.534770	NM_002654	HPRD:01529	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1	pyruvate kinase, muscle	protein-coding
19-PTNLD28-TUMOR_peak_57498	chr2	191878216	191878347	+	3.76566	NA	5' UTR (NM_007315, exon 2 of 25)	5' UTR (NM_007315, exon 2 of 25)	695	NM_007315	6772	Hs.642990	NM_007315	HPRD:02777	STAT1	CANDF7|ISGF-3|STAT91	signal transducer and activator of transcription 1, 91kDa	protein-coding
19-PTNLD28-TUMOR_peak_57455	chr2	191273473	191273777	+	3.76566	NA	intron (NM_017694, intron 1 of 7)	CpG	544	NM_017694	54842	Hs.418581	NM_017694	HPRD:13369	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
19-PTNLD28-TUMOR_peak_95273	chr7	129919235	129919360	+	3.76566	NA	intron (NM_001869, intron 8 of 10)	intron (NM_001869, intron 8 of 10)	12594	NM_001869	1358	Hs.490038	NM_001869	HPRD:02821	CPA2	-	carboxypeptidase A2 (pancreatic)	protein-coding
19-PTNLD28-TUMOR_peak_99896	chr8	103910793	103910945	+	3.76547	NA	Intergenic	Intergenic	-34472	NM_015878	51582	Hs.459106	NM_015878	HPRD:07443	AZIN1	OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_109234	chrX	115009395	115009483	+	3.76547	NA	Intergenic	Intergenic	181620	NM_001282338	5358	Hs.496622	NM_005032	HPRD:02133	PLS3	BMND18|T-plastin	plastin 3	protein-coding
19-PTNLD28-TUMOR_peak_49263	chr19	44098969	44099139	+	3.76490	NA	exon (NM_001007561, exon 2 of 3)	exon (NM_001007561, exon 2 of 3)	1233	NM_001007561	126298	Hs.6217	NM_001007561	HPRD:17161	IRGQ	IRGQ1	immunity-related GTPase family, Q	protein-coding
19-PTNLD28-TUMOR_peak_28208	chr13	49549698	49549833	+	3.76490	NA	promoter-TSS (NM_001278438)	promoter-TSS (NM_001278438)	-283	NM_001079673	22862	Hs.508010	NM_014923	HPRD:13548	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
19-PTNLD28-TUMOR_peak_46871	chr19	5893899	5894091	+	3.76490	NA	TTS (NM_175614)	TTS (NM_175614)	10029	NM_175614	126328	Hs.406062	NM_175614	HPRD:14818	NDUFA11	B14.7|CI-B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa	protein-coding
19-PTNLD28-TUMOR_peak_41858	chr17	43972063	43972184	+	3.76490	NA	intron (NM_001123066, intron 1 of 14).2	CpG	375	NM_016835	4137	Hs.101174	NM_005910	HPRD:01142	MAPT	DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|PPP1R103|TAU	microtubule-associated protein tau	protein-coding
19-PTNLD28-TUMOR_peak_107510	chrX	9816582	9816725	+	3.75795	NA	intron (NM_001649, intron 1 of 9)	MIR3|SINE|MIR	62157	NM_001649	357	Hs.567236	NM_001649	HPRD:02113	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
19-PTNLD28-TUMOR_peak_65416	chr22	37916113	37916224	+	3.75795	NA	promoter-TSS (NM_014550)	promoter-TSS (NM_014550)	-958	NM_014550	29775	Hs.57973	NM_014550	HPRD:06233	CARD10	BIMP1|CARMA3	caspase recruitment domain family, member 10	protein-coding
19-PTNLD28-TUMOR_peak_14613	chr10	82117467	82117682	+	3.75795	NA	intron (NM_001270041, intron 1 of 3)	intron (NM_001270041, intron 1 of 3)	1050	NM_032372	84332	Hs.741500	NM_032372	HPRD:11311	DYDC2	-	DPY30 domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_57174	chr2	178119868	178119956	+	3.75795	NA	TTS (NR_036075)	TTS (NR_036075)	826	NR_036075	100422824		NR_036075		MIR3128	-	microRNA 3128	ncRNA
19-PTNLD28-TUMOR_peak_7442	chr1	157964584	157964720	+	3.75413	NA	intron (NM_001286349, intron 1 of 12)	intron (NM_001286349, intron 1 of 12)	1589	NM_018240	55243	Hs.272234	NM_018240	HPRD:06306	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_54626	chr2	103353526	103353614	+	3.75336	NA	promoter-TSS (NM_032718)	promoter-TSS (NM_032718)	-233	NM_032718	84804	Hs.590898	NM_032718		MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
19-PTNLD28-TUMOR_peak_23449	chr12	26111004	26111104	+	3.75336	NA	promoter-TSS (NM_001164748)	promoter-TSS (NM_001164748)	-536	NR_038227	100506451	Hs.560092	NR_038227		RASSF8-AS1	-	RASSF8 atnisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_22923	chr12	8373497	8373691	+	3.75336	NA	TTS (NM_018088)	TTS (NM_018088)	6620	NM_018088	55138	Hs.196086	NM_018088	HPRD:07672	FAM90A1	-	family with sequence similarity 90, member A1	protein-coding
19-PTNLD28-TUMOR_peak_47048	chr19	8386805	8386920	+	3.75255	NA	promoter-TSS (NM_005001)	promoter-TSS (NM_005001)	478	NM_001031	6234	Hs.153177	NM_001031		RPS28	S28	ribosomal protein S28	protein-coding
19-PTNLD28-TUMOR_peak_59529	chr20	3026856	3026977	+	3.74816	NA	TTS (NM_001501)	TTS (NM_001501)	241	NM_030811	64949	Hs.18946	NM_030811	HPRD:17595	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3	mitochondrial ribosomal protein S26	protein-coding
19-PTNLD28-TUMOR_peak_18068	chr11	35639417	35639519	+	3.74816	NA	promoter-TSS (NM_014344)	promoter-TSS (NM_014344)	-267	NM_014344	24147	Hs.39384	NM_014344	HPRD:16897	FJX1	-	four jointed box 1 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_108789	chrX	75369626	75369890	+	3.74816	NA	Intergenic	CpG	-23006	NM_001300888	51260	Hs.370100	NM_016500	HPRD:06659	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_32694	chr15	27737368	27737640	+	3.74816	NA	intron (NM_033223, intron 6 of 9)	intron (NM_033223, intron 6 of 9)	-331038	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	LOC101928869	-	uncharacterized LOC101928869	ncRNA
19-PTNLD28-TUMOR_peak_32317	chr14	105486845	105486936	+	3.74698	NA	intron (NM_017955, intron 1 of 1)	CpG	535	NM_145701	55038	Hs.34045	NM_017955	HPRD:13015	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
19-PTNLD28-TUMOR_peak_67033	chr3	18466874	18466962	+	3.74553	NA	promoter-TSS (NM_002971)	promoter-TSS (NM_002971)	-89	NM_001195470	6304	Hs.517717	NM_002971	HPRD:03647	SATB1	-	SATB homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_63517	chr21	39860720	39860808	+	3.73907	NA	intron (NR_111949, intron 3 of 4)	intron (NR_111949, intron 3 of 4)	9664	NM_001136155	2078	Hs.473819	NM_004449	HPRD:01298	ERG	erg-3|p55	v-ets avian erythroblastosis virus E26 oncogene homolog	protein-coding
19-PTNLD28-TUMOR_peak_15062	chr10	98479690	98479849	+	3.73694	NA	intron (NM_152309, intron 1 of 16)	CpG	510	NM_152309	118788	Hs.310456	NM_152309	HPRD:06401	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_89988	chr6	150740271	150740359	+	3.73694	NA	Intergenic	Intergenic	50287	NM_001164695	389434	Hs.310225	NM_203395	HPRD:16668	IYD	C6orf71|DEHAL1|TDH4|dJ422F24.1	iodotyrosine deiodinase	protein-coding
19-PTNLD28-TUMOR_peak_40978	chr17	30677476	30677574	+	3.73694	NA	TTS (NR_030362)	TTS (NR_030362)	368	NM_001032293	7756	Hs.500775	NM_003457	HPRD:04576	ZNF207	BuGZ	zinc finger protein 207	protein-coding
19-PTNLD28-TUMOR_peak_26511	chr12	117498244	117498332	+	3.73694	NA	intron (NM_017899, intron 2 of 7)	intron (NM_017899, intron 2 of 7)	38963	NM_001168325	54997	Hs.525709	NM_017899	HPRD:11649	TESC	CHP3|TSC	tescalcin	protein-coding
19-PTNLD28-TUMOR_peak_109101	chrX	106947502	106947618	+	3.73694	NA	Intergenic	L2a|LINE|L2	12151	NM_001015881	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_89086	chr6	110864422	110864590	+	3.73694	NA	Intergenic	Intergenic	-66662	NM_033125	85413	Hs.520319	NM_033125	HPRD:12202	SLC22A16	CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 (organic cation/carnitine transporter), member 16	protein-coding
19-PTNLD28-TUMOR_peak_21448	chr11	117528665	117528853	+	3.73694	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	139217	NM_020693	57453	Hs.659513	NM_020693	HPRD:10921	DSCAML1	-	Down syndrome cell adhesion molecule like 1	protein-coding
19-PTNLD28-TUMOR_peak_31158	chr14	71715382	71715612	+	3.73694	NA	Intergenic	Intergenic	-149557	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
19-PTNLD28-TUMOR_peak_101137	chr8	134445728	134445816	+	3.73694	NA	Intergenic	LTR85a|LTR|Gypsy?	-136225	NM_006096	10397	Hs.372914	NM_006096	HPRD:05586	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_64779	chr22	24921542	24921642	+	3.73694	NA	intron (NM_016327, intron 9 of 9)	intron (NM_016327, intron 9 of 9)	29683	NM_001284257	83606	Hs.9850	NM_031444	HPRD:12796	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_30480	chr14	56584542	56584672	+	3.73274	NA	promoter-TSS (NM_021255)	promoter-TSS (NM_021255)	-486	NM_021255	57161	Hs.657926	NM_021255	HPRD:17835	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
19-PTNLD28-TUMOR_peak_62976	chr21	27288711	27288825	+	3.73274	NA	intron (NM_001136130, intron 12 of 16)	intron (NM_001136130, intron 12 of 16)	-180803	NM_001685	522	Hs.246310	NM_001685	HPRD:04399	ATP5J	ATP5|ATP5A|ATPM|CF6|F6	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6	protein-coding
19-PTNLD28-TUMOR_peak_106087	chr9	128242294	128242388	+	3.73274	NA	intron (NM_001006619, intron 8 of 10)	intron (NM_001006619, intron 8 of 10)	181172	NM_001282681	26130	Hs.495134	NM_015635	HPRD:10886	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_45249	chr18	34214648	34214737	+	3.73274	NA	intron (NM_001281739, intron 10 of 23)	intron (NM_001281739, intron 10 of 23)	-194388	NM_020776	57536	Hs.4045	NM_020776	HPRD:17211	KIAA1328	-	KIAA1328	protein-coding
19-PTNLD28-TUMOR_peak_32547	chr15	22693818	22693906	+	3.73172	NA	Intergenic	AluY|SINE|Alu	-18621	NR_039732	100616223		NR_039732	miRBase:MI0016873	MIR4509-1	-	microRNA 4509-1	ncRNA
19-PTNLD28-TUMOR_peak_66013	chr22	46933609	46933764	+	3.73172	NA	promoter-TSS (NM_014246)	promoter-TSS (NM_014246)	-619	NM_014246	9620	Hs.252387	NM_014246	HPRD:05160	CELSR1	CDHF9|FMI2|HFMI2|ME2	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_17030	chr11	9285398	9285561	+	3.73172	NA	intron (NM_015213, intron 1 of 22)	intron (NM_015213, intron 1 of 22)	1394	NM_001243254	23258	Hs.501857	NM_015213	HPRD:11475	DENND5A	RAB6IP1	DENN/MADD domain containing 5A	protein-coding
19-PTNLD28-TUMOR_peak_107156	chrUn_gl000224	141023	141159	+	3.73172	NA	NA	CER|Satellite|Satellite	NA	NA								
19-PTNLD28-TUMOR_peak_1995	chr1	31255298	31255498	+	3.73172	NA	Intergenic	Intergenic	-24715	NM_006762	7805	Hs.371021	NM_006762	HPRD:03280	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
19-PTNLD28-TUMOR_peak_75590	chr4	69770794	69770882	+	3.73172	NA	Intergenic	HERV3-int|LTR|ERV1	46671	NM_024743	79799	Hs.122583	NM_024743	HPRD:08646	UGT2A3	-	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding
19-PTNLD28-TUMOR_peak_11100	chr1	235804965	235805133	+	3.73172	NA	intron (NM_001098721, intron 1 of 3)	intron (NM_001098721, intron 1 of 3)	8244	NM_001098722	2786	Hs.159711	NM_004485	HPRD:11978	GNG4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
19-PTNLD28-TUMOR_peak_74340	chr4	8372668	8372862	+	3.73172	NA	intron (NM_001101667, intron 15 of 16)	intron (NM_001101667, intron 15 of 16)	69687	NM_001101667	8310	Hs.479122	NM_003501	HPRD:04552	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
19-PTNLD28-TUMOR_peak_100751	chr8	127557475	127557563	+	3.73127	NA	Intergenic	Intergenic	13192	NM_174911	157638	Hs.741352	NM_174911	HPRD:11403	FAM84B	BCMP101|NSE2	family with sequence similarity 84, member B	protein-coding
19-PTNLD28-TUMOR_peak_107113	chrUn_gl000220	150793	150901	+	3.72787	NA	Intergenic	CpG	-5150	NR_003285	100008587		NR_003285		RNA5-8S5	RN5-8S1	RNA, 5.8S ribosomal 5	rRNA
19-PTNLD28-TUMOR_peak_3203	chr1	46632113	46632274	+	3.72656	NA	Intergenic	Intergenic	-8556	NM_005727	10103	Hs.38972	NM_005727	HPRD:18232	TSPAN1	NET1|TM4C|TM4SF	tetraspanin 1	protein-coding
19-PTNLD28-TUMOR_peak_105493	chr9	115822579	115822778	+	3.72498	NA	Intergenic	CpG	-3607	NM_001282515	7539	Hs.150406	NM_003408	HPRD:04258	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
19-PTNLD28-TUMOR_peak_101680	chr8	144952064	144952152	+	3.72162	NA	intron (NM_031308, intron 1 of 1)	CpG	524	NM_031308	83481	Hs.200412	NM_031308		EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
19-PTNLD28-TUMOR_peak_7838	chr1	164581640	164581755	+	3.71686	NA	intron (NM_001204961, intron 2 of 7)	intron (NM_001204961, intron 2 of 7)	53100	NM_002585	5087	Hs.557097	NM_002585	HPRD:08889	PBX1	-	pre-B-cell leukemia homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_89242	chr6	117491310	117491407	+	3.71377	NA	Intergenic	L2a|LINE|L2	-95363	NM_182645	245806	Hs.99324	NM_153453	HPRD:18282	VGLL2	VGL2|VITO1	vestigial-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_36466	chr16	15064476	15064625	+	3.71377	NA	Intergenic	AluSx|SINE|Alu	-4042	NM_001285447	23042	Hs.370781	NM_015027	HPRD:13789	PDXDC1	LP8165	pyridoxal-dependent decarboxylase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_42701	chr17	58212596	58212876	+	3.70974	NA	Intergenic	Intergenic	-14566	NM_000717	762	Hs.89485	NM_000717	HPRD:00261	CA4	CAIV|Car4|RP17	carbonic anhydrase IV	protein-coding
19-PTNLD28-TUMOR_peak_59541	chr20	3184454	3184578	+	3.70974	NA	intron (NM_023935, intron 1 of 8)	intron (NM_023935, intron 1 of 8)	779	NM_023935	65992	Hs.471975	NM_023935	HPRD:12741	DDRGK1	C20orf116|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_24469	chr12	53689495	53689637	+	3.70795	NA	intron (NM_145897, intron 1 of 3)	CpG	331	NM_002624	5204	Hs.655327	NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
19-PTNLD28-TUMOR_peak_26429	chr12	113752000	113752141	+	3.70772	NA	intron (NM_024959, intron 11 of 15)	intron (NM_024959, intron 11 of 15)	20855	NM_024959	80024	Hs.286194	NM_024959	HPRD:15354	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding
19-PTNLD28-TUMOR_peak_52127	chr2	36959397	36959492	+	3.70772	NA	intron (NM_001177971, intron 3 of 13)	intron (NM_001177971, intron 3 of 13)	35611	NM_001177969	5212	Hs.137415	NM_053276	HPRD:18284	VIT	-	vitrin	protein-coding
19-PTNLD28-TUMOR_peak_273	chr1	3369887	3370032	+	3.70772	NA	Intergenic	Intergenic	-1188	NM_014448	27237	Hs.87435	NM_014448	HPRD:12478	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
19-PTNLD28-TUMOR_peak_82289	chr5	134530978	134531088	+	3.70755	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	52834	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
19-PTNLD28-TUMOR_peak_55658	chr2	130623621	130623828	+	3.70755	NA	Intergenic	MIRc|SINE|MIR	-57026	NR_110285	101927924	Hs.570248	NR_110285	ENSG00000237574	LOC101927924	-	uncharacterized LOC101927924	ncRNA
19-PTNLD28-TUMOR_peak_53248	chr2	68291345	68291433	+	3.70755	NA	Intergenic	L1PA5|LINE|L1	-1230	NM_001190265	10438	Hs.602900	NM_006333		C1D	LRP1|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
19-PTNLD28-TUMOR_peak_28014	chr13	42999140	42999302	+	3.70755	NA	Intergenic	L1HS|LINE|L1	-137651	NM_033012	8600	Hs.333791	NM_003701	HPRD:04031	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TRANCE|hRANKL2|sOdf	tumor necrosis factor (ligand) superfamily, member 11	protein-coding
19-PTNLD28-TUMOR_peak_46258	chr18	72264615	72264723	+	3.70755	NA	non-coding (NR_024484, exon 1 of 2)	non-coding (NR_024484, exon 1 of 2)	402	NR_024484	400657	Hs.61508	NM_001008234	HPRD:17385	LINC00909	-	long intergenic non-protein coding RNA 909	ncRNA
19-PTNLD28-TUMOR_peak_105547	chr9	116499835	116499971	+	3.70755	NA	Intergenic	Intergenic	-138659	NM_133374	114991	Hs.349208	NM_133374	HPRD:18719	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
19-PTNLD28-TUMOR_peak_102302	chr9	16310891	16311033	+	3.70755	NA	Intergenic	Intergenic	-34651	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
19-PTNLD28-TUMOR_peak_75325	chr4	54403923	54404046	+	3.70755	NA	intron (NM_001126328, intron 2 of 10)	intron (NM_001126328, intron 2 of 10)	20452	NM_032622	84708	Hs.518760	NM_032622	HPRD:17287	LNX1	LNX|MPDZ|PDZRN2	ligand of numb-protein X 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_83825	chr5	169559834	169559950	+	3.70755	NA	Intergenic	Intergenic	26975	NM_144769	2299	Hs.87236	NM_012188	HPRD:03057	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding
19-PTNLD28-TUMOR_peak_93347	chr7	74348083	74348171	+	3.70755	NA	Intergenic	Intergenic	41240	NR_027776	5383	Hs.292996	NM_174930	HPRD:17867	PMS2P5	PMS2L5|PMS7	postmeiotic segregation increased 2 pseudogene 5	pseudo
19-PTNLD28-TUMOR_peak_93421	chr7	75346358	75346489	+	3.70755	NA	intron (NM_005338, intron 1 of 30)	AluJr|SINE|Alu	21867	NM_005338	3092	Hs.329266	NM_005338	HPRD:03461	HIP1	HIP-I|ILWEQ	huntingtin interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_14794	chr10	89623302	89623436	+	3.70477	NA	promoter-TSS (NM_001126049)	promoter-TSS (NM_001126049)	174	NM_000314	5728	Hs.500466	NM_000314		PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1	phosphatase and tensin homolog	protein-coding
19-PTNLD28-TUMOR_peak_99408	chr8	86774683	86774895	+	3.70063	NA	TTS (NR_003594).6	TTS (NR_003594).6	1339	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_84291	chr5	176738904	176738992	+	3.70017	NA	5' UTR (NM_031300, exon 1 of 6)	5' UTR (NM_031300, exon 1 of 6)	344	NM_031300	83463	Hs.743332	NM_031300	HPRD:14791	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
19-PTNLD28-TUMOR_peak_100969	chr8	131369708	131369838	+	3.69706	NA	intron (NM_018482, intron 3 of 29)	intron (NM_018482, intron 3 of 29)	-60994	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_54291	chr2	97074505	97074602	+	3.69275	NA	Intergenic	LTR45|LTR|ERV1	73074	NM_015341	23397	Hs.308045	NM_015341	HPRD:03820	NCAPH	BRRN1|CAP-H	non-SMC condensin I complex, subunit H	protein-coding
19-PTNLD28-TUMOR_peak_78404	chr4	187112984	187113072	+	3.69275	NA	promoter-TSS (NR_046264)	promoter-TSS (NR_046264)	354	NM_207352	285440	Hs.587231	NM_207352		CYP4V2	BCD|CYP4AH1	cytochrome P450, family 4, subfamily V, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_93393	chr7	75004750	75004896	+	3.69275	NA	Intergenic	AluSz|SINE|Alu	16376	NR_040583	54441	Hs.632310	NM_018991		STAG3L1	STAG3L1P|STAG3L2|STAG3L3	stromal antigen 3-like 1 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_85800	chr6	19757757	19757849	+	3.68847	NA	Intergenic	AluSx1|SINE|Alu	-79798	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_92427	chr7	47442721	47442847	+	3.68847	NA	intron (NM_022748, intron 13 of 30)	intron (NM_022748, intron 13 of 30)	178958	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_68296	chr3	52001729	52001817	+	3.68847	NA	promoter-TSS (NM_020418)	promoter-TSS (NM_020418)	-291	NM_033008	57060	Hs.20930	NM_020418	HPRD:16343	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_24564	chr12	54763052	54763215	+	3.68847	NA	3' UTR (NM_001290002, exon 9 of 9)	3' UTR (NM_001290002, exon 9 of 9)	-4863	NM_020370	53831	Hs.306199	NM_020370	HPRD:16213	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
19-PTNLD28-TUMOR_peak_107273	chrUn_gl000228	43566	43696	+	3.68847	NA	Intergenic	CpG	-11405	NM_001286820	448831	Hs.626907	NM_001005217	HPRD:16418	FRG2	FRG2A	FSHD region gene 2	protein-coding
19-PTNLD28-TUMOR_peak_1508	chr1	24307394	24307483	+	3.68847	NA	promoter-TSS (NM_001191005)	promoter-TSS (NM_001191005)	-485	NM_006625	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_95576	chr7	135442985	135443080	+	3.68847	NA	Intergenic	Intergenic	-9438	NM_205855	389558	Hs.55200	NM_205855	HPRD:15613	FAM180A	UNQ1940	family with sequence similarity 180, member A	protein-coding
19-PTNLD28-TUMOR_peak_91863	chr7	30880782	30880966	+	3.68302	NA	intron (NM_032222, intron 9 of 17)	intron (NM_032222, intron 9 of 17)	69841	NM_032222	84182	Hs.660192	NM_032222	HPRD:13387	FAM188B	C7orf67	family with sequence similarity 188, member B	protein-coding
19-PTNLD28-TUMOR_peak_61236	chr20	43036179	43036267	+	3.68302	NA	promoter-TSS (NR_037419)	promoter-TSS (NR_037419)	-537	NR_037419	100500813		NR_037419		MIR3646	-	microRNA 3646	ncRNA
19-PTNLD28-TUMOR_peak_10996	chr1	234675221	234675368	+	3.68301	NA	Intergenic	Intergenic	-7769	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
19-PTNLD28-TUMOR_peak_66844	chr3	14646273	14646390	+	3.68111	NA	Intergenic	Intergenic	-46922	NM_016474	51244	Hs.517820	NM_016474	HPRD:12820	CCDC174	C3orf19	coiled-coil domain containing 174	protein-coding
19-PTNLD28-TUMOR_peak_11503	chr1	246945484	246945602	+	3.67816	NA	Intergenic	AluJo|SINE|Alu	-7376	NR_015422	149134	Hs.720494	NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
19-PTNLD28-TUMOR_peak_16680	chr11	2828501	2828817	+	3.67816	NA	intron (NM_181798, intron 15 of 15)	CpG	-62604	NR_024627	55539	Hs.127821	NM_018722	HPRD:17174	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_76825	chr4	121177737	121177825	+	3.67816	NA	Intergenic	L1PA2|LINE|L1	-189768	NM_002358	4085	Hs.591697	NM_002358		MAD2L1	HSMAD2|MAD2	MAD2 mitotic arrest deficient-like 1 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_20084	chr11	75239568	75239779	+	3.67772	NA	Intergenic	Intergenic	-3074	NM_030792	81544	Hs.503297	NM_030792	HPRD:15159	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_66370	chr3	8533528	8533630	+	3.67656	NA	intron (NR_033378, intron 3 of 3)	L3|LINE|CR1	9765	NR_033378	100288428	Hs.651576	NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_44844	chr18	20186780	20186971	+	3.66972	NA	Intergenic	Intergenic	179925	NR_110782	101927571	Hs.335020	NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
19-PTNLD28-TUMOR_peak_75802	chr4	77813891	77814030	+	3.66972	NA	Intergenic	Intergenic	5042	NM_001029870	345079	Hs.257292	NM_001029870	HPRD:18789	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
19-PTNLD28-TUMOR_peak_10302	chr1	223744987	223745075	+	3.66972	NA	intron (NM_001143962, intron 10 of 16)	intron (NM_001143962, intron 10 of 16)	108405	NM_001143962	388743	Hs.291487	NM_001143962		CAPN8	nCL-2	calpain 8	protein-coding
19-PTNLD28-TUMOR_peak_107110	chrUn_gl000220	106821	106929	+	3.66736	NA	non-coding (NR_046235, exon 1 of 1)	non-coding (NR_046235, exon 1 of 1)	1451	NR_046235	100861532		NR_046235		RNA45S5	RN45S	RNA, 45S pre-ribosomal 5	rRNA
19-PTNLD28-TUMOR_peak_102184	chr9	12775958	12776115	+	3.66732	NA	intron (NM_203403, intron 1 of 1)	intron (NM_203403, intron 1 of 1)	1024	NM_203403	286343	Hs.445356	NM_203403		LURAP1L	C9orf150|bA3L8.2	leucine rich adaptor protein 1-like	protein-coding
19-PTNLD28-TUMOR_peak_70673	chr3	128786829	128786955	+	3.66732	NA	Intergenic	LTR12C|LTR|ERV1	7282	NM_000174	2815	Hs.1144	NM_000174	HPRD:01432	GP9	CD42a|GPIX	glycoprotein IX (platelet)	protein-coding
19-PTNLD28-TUMOR_peak_51588	chr2	25143471	25143559	+	3.66732	NA	Intergenic	CpG	-1460	NM_004036	109	Hs.467898	NM_004036	HPRD:02620	ADCY3	AC3	adenylate cyclase 3	protein-coding
19-PTNLD28-TUMOR_peak_94277	chr7	99769195	99769283	+	3.66732	NA	exon (NM_152742, exon 8 of 10)	exon (NM_152742, exon 8 of 10)	-2866	NM_024637	79690	Hs.44856	NM_024637	HPRD:12195	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
19-PTNLD28-TUMOR_peak_64414	chr22	20147328	20147416	+	3.66732	NA	Intergenic	Intergenic	-9941	NM_001243537	388849	Hs.454905	NM_001243537		LOC388849	-	uncharacterized LOC388849	protein-coding
19-PTNLD28-TUMOR_peak_50396	chr19	56031453	56031637	+	3.66325	NA	Intergenic	MIR|SINE|MIR	16890	NM_001101401	646643	Hs.532676	NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_9475	chr1	203765486	203765604	+	3.66224	NA	5' UTR (NM_014827, exon 2 of 20)	5' UTR (NM_014827, exon 2 of 20)	794	NM_014827	9877	Hs.532399	NM_014827	HPRD:11100	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding
19-PTNLD28-TUMOR_peak_18173	chr11	41326566	41326707	+	3.65853	NA	intron (NM_001258419, intron 1 of 6)	SVA_F|Other|Other	154550	NM_001258419	57689	Hs.745123	NM_020929	HPRD:12303	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
19-PTNLD28-TUMOR_peak_92422	chr7	47410093	47410229	+	3.65080	NA	intron (NM_022748, intron 16 of 30)	intron (NM_022748, intron 16 of 30)	211581	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
19-PTNLD28-TUMOR_peak_70389	chr3	124931914	124932002	+	3.65080	NA	promoter-TSS (NM_024628)	promoter-TSS (NM_024628)	-349	NM_024628	84561	Hs.658514	NM_024628	HPRD:11563	SLC12A8	CCC9	solute carrier family 12, member 8	protein-coding
19-PTNLD28-TUMOR_peak_80665	chr5	73293909	73294007	+	3.65080	NA	Intergenic	Intergenic	184615	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
19-PTNLD28-TUMOR_peak_35877	chr16	3014924	3015096	+	3.64968	NA	exon (NM_024507, exon 2 of 8)	exon (NM_024507, exon 2 of 8)	793	NM_001253726	79412	Hs.661128	NM_024507	HPRD:13933	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_91193	chr7	6703863	6704040	+	3.64899	NA	Intergenic	CpG	26998	NM_001278559	100131017	Hs.112668	NM_001278559		ZNF316	ENST00000305834|MZF-3	zinc finger protein 316	protein-coding
19-PTNLD28-TUMOR_peak_75467	chr4	58030232	58030398	+	3.64899	NA	intron (NR_034081, intron 1 of 4)	CpG	-53764	NM_001253835	3490	Hs.479808	NM_001553	HPRD:04183	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin-like growth factor binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_94619	chr7	103969339	103969523	+	3.64899	NA	exon (NM_199000, exon 1 of 3)	exon (NM_199000, exon 1 of 3)	327	NM_199000	375612	Hs.659164	NM_199000		LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding
19-PTNLD28-TUMOR_peak_102810	chr9	34676012	34676184	+	3.64899	NA	Intergenic	Intergenic	-13409	NM_006664	10850	Hs.648124	NM_006664	HPRD:05321	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	chemokine (C-C motif) ligand 27	protein-coding
19-PTNLD28-TUMOR_peak_11645	chr10	1344560	1344740	+	3.64899	NA	intron (NM_018702, intron 3 of 9)	L1PA2|LINE|L1	138942	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
19-PTNLD28-TUMOR_peak_52208	chr2	38481819	38481907	+	3.64899	NA	Intergenic	LTR27B|LTR|ERV1	122569	NM_022374	64225	Hs.727652	NM_022374	HPRD:10662	ATL2	ARL3IP2|ARL6IP2|atlastin2	atlastin GTPase 2	protein-coding
19-PTNLD28-TUMOR_peak_42682	chr17	57971118	57971226	+	3.64713	NA	promoter-TSS (NM_016261)	promoter-TSS (NM_016261)	765	NM_001272043	6198	Hs.463642	NM_003161	HPRD:10202	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase, 70kDa, polypeptide 1	protein-coding
19-PTNLD28-TUMOR_peak_34878	chr15	83114472	83114645	+	3.64669	NA	intron (NR_111962, intron 7 of 10)	CpG	15848	NM_198181	440295	Hs.498322	NM_198181	HPRD:11262	GOLGA6L9	GOLGA6L20	golgin A6 family-like 9	protein-coding
19-PTNLD28-TUMOR_peak_89055	chr6	109762511	109762668	+	3.64669	NA	promoter-TSS (NM_001111298)	promoter-TSS (NM_001111298)	-215	NM_001111298	285755	Hs.32234	NM_173672	HPRD:15165	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding
19-PTNLD28-TUMOR_peak_41330	chr17	38109115	38109217	+	3.64634	NA	Intergenic	(CTGGGG)n|Simple_repeat|Simple_repeat	-10060	NM_178171	284110	Hs.448873	NM_178171	HPRD:17081	GSDMA	GSDM|GSDM1	gasdermin A	protein-coding
19-PTNLD28-TUMOR_peak_21799	chr11	123301128	123301216	+	3.64634	NA	Intergenic	CpG	-48952	NR_039714	100616319		NR_039714	miRBase:MI0016855	MIR4493	-	microRNA 4493	ncRNA
19-PTNLD28-TUMOR_peak_92280	chr7	44362329	44362523	+	3.64634	NA	intron (NM_001293170, intron 1 of 20)	intron (NM_001293170, intron 1 of 20)	2804	NM_172079	816	Hs.351887	NM_001220	HPRD:12127	CAMK2B	CAM2|CAMK2|CAMKB	calcium/calmodulin-dependent protein kinase II beta	protein-coding
19-PTNLD28-TUMOR_peak_24202	chr12	50898358	50898454	+	3.64634	NA	promoter-TSS (NM_173602)	promoter-TSS (NM_173602)	-362	NM_173602	57609	Hs.505516	NM_020849	HPRD:08751	DIP2B	-	DIP2 disco-interacting protein 2 homolog B (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_50633	chr1_gl000191_random	50722	50811	+	3.64634	NA	promoter-TSS (NM_001300936).2	promoter-TSS (NM_001300936).2	-485	NM_054016	10772	Hs.3530	NM_006625	HPRD:05562	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding
19-PTNLD28-TUMOR_peak_7514	chr1	159184025	159184138	+	3.64634	NA	Intergenic	Intergenic	9032	NM_001122951	2532	Hs.153381	NM_002036	HPRD:00192	ACKR1	CCBP1|CD234|DARC|Dfy|FY|GPD|GpFy|WBCQ1	atypical chemokine receptor 1 (Duffy blood group)	protein-coding
19-PTNLD28-TUMOR_peak_87159	chr6	36991452	36991543	+	3.63528	NA	intron (NM_173558, intron 13 of 15)	intron (NM_173558, intron 13 of 15)	18074	NM_173558	221472	Hs.509664	NM_173558	HPRD:05478	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_93073	chr7	70159836	70159931	+	3.63409	NA	intron (NM_001127231, intron 5 of 17)	CpG	-437640	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_39251	chr16	86609451	86609593	+	3.63409	NA	Intergenic	CpG	-2593	NM_005250	2300	Hs.533830	NM_005250	HPRD:07219	FOXL1	FKH6|FKHL11|FREAC7	forkhead box L1	protein-coding
19-PTNLD28-TUMOR_peak_32611	chr15	24731424	24731512	+	3.63409	NA	Intergenic	Intergenic	-71836	NR_026646	791114	Hs.720900	NR_026646	ENSG00000259905	PWRN1	NCRNA00198	Prader-Willi region non-protein coding RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_64491	chr22	21218861	21219040	+	3.63409	NA	intron (NM_004782, intron 1 of 4)	intron (NM_004782, intron 1 of 4)	5658	NM_004782	9342	Hs.108002	NM_004782	HPRD:11968	SNAP29	CEDNIK|SNAP-29	synaptosomal-associated protein, 29kDa	protein-coding
19-PTNLD28-TUMOR_peak_82615	chr5	139677857	139678094	+	3.63241	NA	intron (NM_002622, intron 2 of 3)	intron (NM_002622, intron 2 of 3)	4714	NM_002622	5201	Hs.483564	NM_002622	HPRD:05357	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_52399	chr2	43334153	43334256	+	3.63241	NA	Intergenic	Intergenic	-67522	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_25431	chr12	80084632	80084793	+	3.63198	NA	promoter-TSS (NM_002583)	promoter-TSS (NM_002583)	78	NM_002583	5074	Hs.643130	NM_002583		PAWR	PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
19-PTNLD28-TUMOR_peak_7162	chr1	155099096	155099330	+	3.62890	NA	Intergenic	CpG	-1136	NM_004428	1942	Hs.516664	NM_004428	HPRD:01858	EFNA1	B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4	ephrin-A1	protein-coding
19-PTNLD28-TUMOR_peak_99416	chr8	86815622	86815737	+	3.62849	NA	non-coding (NR_003594, exon 1 of 1).9	non-coding (NR_003594, exon 1 of 1).9	111	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_64936	chr22	28416472	28416608	+	3.62500	NA	intron (NM_001145418, intron 13 of 22)	intron (NM_001145418, intron 13 of 22)	-99940	NR_036169	100423034		NR_036169	miRBase:MI0014247	MIR3199-1	-	microRNA 3199-1	ncRNA
19-PTNLD28-TUMOR_peak_85456	chr6	13075852	13075990	+	3.62500	NA	intron (NM_030948, intron 5 of 14)	intron (NM_030948, intron 5 of 14)	219897	NM_001242698	100130357	Hs.657498	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
19-PTNLD28-TUMOR_peak_84657	chr6	379299	379555	+	3.62500	NA	Intergenic	Intergenic	-12312	NR_046000	3662	Hs.401013	NM_002460	HPRD:03543	IRF4	LSIRF|MUM1|NF-EM5	interferon regulatory factor 4	protein-coding
19-PTNLD28-TUMOR_peak_52747	chr2	51179842	51180006	+	3.62500	NA	intron (NM_004801, intron 2 of 21)	intron (NM_004801, intron 2 of 21)	79750	NM_004801	9378	Hs.637685	NM_004801	HPRD:11858	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
19-PTNLD28-TUMOR_peak_90819	chr7	1211240	1211368	+	3.62056	NA	Intergenic	LTR12F|LTR|ERV1	10883	NR_110070	101927021	Hs.529566	NR_110065		LOC101927021	-	uncharacterized LOC101927021	ncRNA
19-PTNLD28-TUMOR_peak_12623	chr10	28950097	28950185	+	3.62032	NA	Intergenic	LTR8A|LTR|ERV1	-16283	NM_012342	25805	Hs.533336	NM_012342	HPRD:05117	BAMBI	NMA	BMP and activin membrane-bound inhibitor	protein-coding
19-PTNLD28-TUMOR_peak_33315	chr15	43397642	43397730	+	3.62032	NA	intron (NM_174916, intron 1 of 46)	intron (NM_174916, intron 1 of 46)	600	NM_174916	197131	Hs.591121	NM_174916	HPRD:09342	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
19-PTNLD28-TUMOR_peak_49244	chr19	43033492	43033605	+	3.62032	NA	promoter-TSS (NM_001184813)	promoter-TSS (NM_001184813)	-887	NM_001024912	634	Hs.512682	NM_001712	HPRD:00191	CEACAM1	BGP|BGP1|BGPI	carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	protein-coding
19-PTNLD28-TUMOR_peak_88455	chr6	79949228	79949349	+	3.61688	NA	Intergenic	Intergenic	-4833	NM_004242	9324	Hs.77558	NM_004242	HPRD:16062	HMGN3	PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
19-PTNLD28-TUMOR_peak_61088	chr20	39316501	39316736	+	3.61634	NA	exon (NM_005461, exon 1 of 1)	exon (NM_005461, exon 1 of 1)	1262	NM_005461	9935	Hs.169487	NM_005461	HPRD:07129	MAFB	KRML|MCTO	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B	protein-coding
19-PTNLD28-TUMOR_peak_77162	chr4	139936048	139936328	+	3.61604	NA	promoter-TSS (NM_012118)	promoter-TSS (NM_012118)	-725	NM_012118	25819	Hs.639842	NM_012118	HPRD:16337	CCRN4L	CCR4L|Ccr4c|NOC	CCR4 carbon catabolite repression 4-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_82557	chr5	139069704	139070057	+	3.61389	NA	Intergenic	Intergenic	41579	NM_016463	51523	Hs.744933	NM_016463	HPRD:13105	CXXC5	CF5|RINF|WID	CXXC finger protein 5	protein-coding
19-PTNLD28-TUMOR_peak_9069	chr1	197887413	197887501	+	3.61389	NA	intron (NM_001014434, intron 2 of 5)	CpG	940	NM_020204	56956	Hs.442578	NM_020204	HPRD:07299	LHX9	-	LIM homeobox 9	protein-coding
19-PTNLD28-TUMOR_peak_43224	chr17	70513084	70513207	+	3.61335	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	75798	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	LINC00511	long intergenic non-protein coding RNA 673	ncRNA
19-PTNLD28-TUMOR_peak_251	chr1	2487152	2487258	+	3.61335	NA	promoter-TSS (NM_001297605)	promoter-TSS (NM_001297605)	-599	NM_001297605	8764	Hs.512898	NM_003820	HPRD:04122	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	tumor necrosis factor receptor superfamily, member 14	protein-coding
19-PTNLD28-TUMOR_peak_32052	chr14	100633075	100633215	+	3.61002	NA	Intergenic	Intergenic	-7133	NM_206918	123099	Hs.159643	NM_206918		DEGS2	C14orf66|DES2|FADS8	delta(4)-desaturase, sphingolipid 2	protein-coding
19-PTNLD28-TUMOR_peak_12454	chr10	24705301	24705389	+	3.61002	NA	intron (NM_001282767, intron 3 of 18)	intron (NM_001282767, intron 3 of 18)	-33017	NM_001282769	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_23638	chr12	31743092	31743296	+	3.60421	NA	intron (NR_046909, intron 1 of 2)	CpG	337	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	-	DENND5B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_2796	chr1	41418234	41418333	+	3.60421	NA	Intergenic	Intergenic	-26688	NR_125440	1503	Hs.473087	NM_001905	HPRD:00465	CTPS1	CTPS|IMD24	CTP synthase 1	protein-coding
19-PTNLD28-TUMOR_peak_39186	chr16	85456423	85456588	+	3.60421	NA	Intergenic	Intergenic	-116574	NR_049816	100847022		NR_049816	miRBase:MI0017982	MIR5093	-	microRNA 5093	ncRNA
19-PTNLD28-TUMOR_peak_105254	chr9	111241412	111241500	+	3.59664	NA	Intergenic	MamRep605|Unknown|Unknown	376819	NM_006686	10880	Hs.534390	NM_006686		ACTL7B	Tact1	actin-like 7B	protein-coding
19-PTNLD28-TUMOR_peak_18823	chr11	60839593	60839716	+	3.59537	NA	Intergenic	Intergenic	-30276	NM_014207	921	Hs.58685	NM_014207	HPRD:01078	CD5	LEU1|T1	CD5 molecule	protein-coding
19-PTNLD28-TUMOR_peak_64692	chr22	23868961	23869089	+	3.59537	NA	Intergenic	Intergenic	-39858	NR_110539	388882	Hs.542766	NR_110539	HPRD:14207	LOC388882	-	uncharacterized LOC388882	ncRNA
19-PTNLD28-TUMOR_peak_13815	chr10	62637337	62637471	+	3.59183	NA	intron (NR_024554, intron 9 of 11)	L2c|LINE|L2	66629	NM_001242359	9886	Hs.737374	NM_014836	HPRD:06299	RHOBTB1	-	Rho-related BTB domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_4280	chr1	68773800	68773968	+	3.59183	NA	Intergenic	Intergenic	-75600	NM_024911	79971	Hs.647659	NM_024911	HPRD:10980	WLS	C1orf139|EVI|GPR177|MRP|mig-14	wntless Wnt ligand secretion mediator	protein-coding
19-PTNLD28-TUMOR_peak_109363	chrX	122964373	122964536	+	3.59183	NA	Intergenic	Intergenic	-29208	NM_001204401	331	Hs.356076	NM_001167	HPRD:02094	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
19-PTNLD28-TUMOR_peak_98557	chr8	43827999	43828160	+	3.59172	NA	Intergenic	ALR/Alpha|Satellite|centr	680494	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family, member A	protein-coding
19-PTNLD28-TUMOR_peak_106755	chr9	139462156	139462280	+	3.58679	NA	Intergenic	Intergenic	19924	NR_121577	101928483	Hs.170035	NR_121577		MIR4674HG	-	MIR4674 host gene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_87701	chr6	44432820	44432908	+	3.58602	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	29486	NR_039785	100616352		NR_039785		MIR4642	-	microRNA 4642	ncRNA
19-PTNLD28-TUMOR_peak_90629	chr6	169613576	169613664	+	3.58602	NA	Intergenic	Intergenic	40589	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_102699	chr9	33355057	33355184	+	3.58602	NA	intron (NM_002504, intron 19 of 23)	intron (NM_002504, intron 19 of 23)	47397	NM_001170	364	Hs.455323	NM_001170	HPRD:04277	AQP7	AQP7L|AQP9|AQPap|GLYCQTL	aquaporin 7	protein-coding
19-PTNLD28-TUMOR_peak_100834	chr8	128879649	128879829	+	3.58602	NA	Intergenic	Intergenic	-23135	NR_003367	5820	Hs.133107	NR_003367	ENSG00000249859	PVT1	LINC00079|NCRNA00079	Pvt1 oncogene (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_107340	chrX	1510875	1510963	+	3.58353	NA	5' UTR (NM_001636, exon 1 of 4)	5' UTR (NM_001636, exon 1 of 4)	120	NM_001636	293	Hs.350927	NM_001636		SLC25A6	2|3|AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	protein-coding
19-PTNLD28-TUMOR_peak_34126	chr15	67439356	67439444	+	3.58353	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	9041	NM_001145103	4088	Hs.727986	NM_005902	HPRD:04380	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
19-PTNLD28-TUMOR_peak_57109	chr2	176867470	176867558	+	3.58044	NA	promoter-TSS (NM_030650)	promoter-TSS (NM_030650)	-496	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_66551	chr3	10669726	10669814	+	3.57362	NA	Intergenic	L2b|LINE|L2	-1278	NR_046766	100874325	Hs.143004	NR_046766		ATP2B2-IT2	-	ATP2B2 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_30375	chr14	54446136	54446304	+	3.57362	NA	Intergenic	Intergenic	-22666	NM_001202	652	Hs.68879	NM_001202	HPRD:00207	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
19-PTNLD28-TUMOR_peak_76741	chr4	119033967	119034120	+	3.57362	NA	intron (NM_004784, intron 3 of 13)	intron (NM_004784, intron 3 of 13)	78543	NM_004784	9348	Hs.480596	NM_004784	ENSG00000164100	NDST3	HSST3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
19-PTNLD28-TUMOR_peak_43515	chr17	74047265	74047420	+	3.57362	NA	intron (NM_001260502, intron 7 of 14)	intron (NM_001260502, intron 7 of 14)	2395	NM_001260503	6730	Hs.514495	NM_014230	HPRD:05331	SRP68	-	signal recognition particle 68kDa	protein-coding
19-PTNLD28-TUMOR_peak_56389	chr2	153925823	153925911	+	3.57362	NA	Intergenic	Intergenic	351460	NR_024526	151188	Hs.643580	NM_152522	HPRD:12485	ARL6IP6	AIP-6|PFAAP1	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
19-PTNLD28-TUMOR_peak_4824	chr1	91305091	91305179	+	3.57362	NA	Intergenic	Intergenic	-122341	NM_020063	343472	Hs.451956	NM_020063		BARHL2	-	BarH-like homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_60649	chr20	33126533	33126701	+	3.57362	NA	intron (NM_177953, intron 4 of 4)	intron (NM_177953, intron 4 of 4)	-8071	NM_181509	84557	Hs.632273	NM_032514	HPRD:03144	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_63329	chr21	36109457	36109753	+	3.57362	NA	promoter-TSS (NR_024351)	promoter-TSS (NR_024351)	-126	NR_024351	54064	Hs.436868	NR_024351	ENSG00000230978	LINC00160	C21orf52|NCRNA00160	long intergenic non-protein coding RNA 160	ncRNA
19-PTNLD28-TUMOR_peak_93583	chr7	77612354	77612495	+	3.57362	NA	Intergenic	Intergenic	142977	NM_001127357	57157	Hs.203965	NM_020432	HPRD:15130	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
19-PTNLD28-TUMOR_peak_40318	chr17	16290146	16290291	+	3.57362	NA	Intergenic	CpG	5439	NM_001281717	7314	Hs.356190	NM_018955	HPRD:06771	UBB	-	ubiquitin B	protein-coding
19-PTNLD28-TUMOR_peak_84137	chr5	173947601	173947731	+	3.57362	NA	intron (NR_125806, intron 3 of 5)	intron (NR_125806, intron 3 of 5)	184309	NR_125806	101928176	Hs.436014	NR_125806		LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
19-PTNLD28-TUMOR_peak_50804	chr2	1699347	1699683	+	3.57362	NA	intron (NM_012293, intron 1 of 22)	intron (NM_012293, intron 1 of 22)	48804	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_94232	chr7	99338179	99338305	+	3.57362	NA	Intergenic	MIRc|SINE|MIR	-5419	NM_001256497	100861540		NM_001256497		CYP3A7-CYP3AP1	CYP3A7-3AP1|CYP3A7.1L	CYP3A7-CYP3AP1 readthrough	protein-coding
19-PTNLD28-TUMOR_peak_53032	chr2	63903436	63903524	+	3.57362	NA	Intergenic	L1MEg|LINE|L1	87195	NM_001199112	4190	Hs.526521	NM_005917	HPRD:01100	MDH1	HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1, NAD (soluble)	protein-coding
19-PTNLD28-TUMOR_peak_48306	chr19	24183664	24183806	+	3.57362	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-32472	NM_001278661	9534	Hs.434406	NM_004876	HPRD:05304	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
19-PTNLD28-TUMOR_peak_99610	chr8	97803398	97803539	+	3.57362	NA	intron (NM_016134, intron 2 of 7)	MIR|SINE|MIR	146013	NM_016134	10404	Hs.156178	NM_016134	HPRD:07140	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
19-PTNLD28-TUMOR_peak_25215	chr12	70058803	70058975	+	3.57362	NA	intron (NM_032735, intron 9 of 9)	L4|LINE|RTE	24168	NM_152439	144453	Hs.280782	NM_032735	HPRD:17484	BEST3	VMD2L3	bestrophin 3	protein-coding
19-PTNLD28-TUMOR_peak_81105	chr5	90194305	90194393	+	3.57362	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	339732	NR_003149	84059	Hs.591777	NM_032119	HPRD:09111	GPR98	FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b	G protein-coupled receptor 98	protein-coding
19-PTNLD28-TUMOR_peak_74748	chr4	22971162	22971322	+	3.57362	NA	Intergenic	Intergenic	255530	NM_001277225	57733	Hs.653107	NM_020973	HPRD:09428	GBA3	CBG|CBGL1|GLUC|KLRP	glucosidase, beta, acid 3	protein-coding
19-PTNLD28-TUMOR_peak_44037	chr17	79935693	79935788	+	3.57362	NA	intron (NR_045351, intron 1 of 14)	CpG	314	NM_001251888	79058	Hs.298351	NM_024083	HPRD:06947	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	alveolar soft part sarcoma chromosome region, candidate 1	protein-coding
19-PTNLD28-TUMOR_peak_12178	chr10	15963057	15963198	+	3.57362	NA	Intergenic	L1PA2|LINE|L1	-60608	NM_024948	80013	Hs.158870	NM_024948	HPRD:10702	FAM188A	C10orf97|CARP|DERP5|MST126|my042	family with sequence similarity 188, member A	protein-coding
19-PTNLD28-TUMOR_peak_55964	chr2	137142326	137142474	+	3.57362	NA	Intergenic	Intergenic	-266675	NM_003467	7852	Hs.593413	NM_003467	HPRD:01217	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM	chemokine (C-X-C motif) receptor 4	protein-coding
19-PTNLD28-TUMOR_peak_108074	chrX	43885737	43885825	+	3.57362	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-52860	NM_000266	4693	Hs.522615	NM_000266	HPRD:02404	NDP	EVR2|FEVR|ND	Norrie disease (pseudoglioma)	protein-coding
19-PTNLD28-TUMOR_peak_108940	chrX	96644787	96644950	+	3.57362	NA	intron (NM_007309, intron 25 of 26)	LTR26|LTR|ERV1	174666	NR_125391	10824	Hs.654372	NR_125391		DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_84226	chr5	175679597	175679710	+	3.57362	NA	intron (NM_198567, intron 1 of 8)	SVA_D|Other|Other	14283	NM_198567	375484	Hs.719847	NM_198567	HPRD:13486	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO-interacting motifs containing 1	protein-coding
19-PTNLD28-TUMOR_peak_72650	chr3	182130026	182130167	+	3.57362	NA	Intergenic	Intergenic	74054	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	FLJ46066	-	uncharacterized LOC401103	ncRNA
19-PTNLD28-TUMOR_peak_107338	chrX	1393733	1393899	+	3.57362	NA	intron (NR_027760, intron 2 of 11).2	intron (NR_027760, intron 2 of 11).2	6123	NR_027760	1438	Hs.520937	NM_006140	HPRD:02381	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_28384	chr13	60140787	60140920	+	3.57362	NA	Intergenic	Intergenic	-445999	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_83667	chr5	161636128	161636216	+	3.57362	NA	Intergenic	Intergenic	141524	NM_198904	2566	Hs.7195	NM_000816	HPRD:00663	GABRG2	CAE2|ECA2|GEFSP3	gamma-aminobutyric acid (GABA) A receptor, gamma 2	protein-coding
19-PTNLD28-TUMOR_peak_78797	chr5	8526034	8526151	+	3.57362	NA	Intergenic	Intergenic	65054	NR_039663	100616142		NR_039663	miRBase:MI0016804	MIR4458	-	microRNA 4458	ncRNA
19-PTNLD28-TUMOR_peak_84692	chr6	1087833	1087921	+	3.57362	NA	intron (NR_027115, intron 1 of 4)	intron (NR_027115, intron 1 of 4)	13690	NR_027116	285768	Hs.209463	NR_027115		LOC285768	-	uncharacterized LOC285768	ncRNA
19-PTNLD28-TUMOR_peak_69879	chr3	113242225	113242383	+	3.57362	NA	Intergenic	MER89-int|LTR|ERV1	-8270	NM_144718	152185	Hs.477144	NM_144718	HPRD:11242	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_75544	chr4	65912479	65912567	+	3.57362	NA	Intergenic	Intergenic	-42305	NR_033976	401134	Hs.165899	NR_033976	ENSG00000250125	LOC401134	-	uncharacterized LOC401134	ncRNA
19-PTNLD28-TUMOR_peak_49414	chr19	46094326	46094414	+	3.57362	NA	exon (NM_005282, exon 2 of 2)	exon (NM_005282, exon 2 of 2)	-6248	NM_025136	80207	Hs.466945	NM_025136	HPRD:05956	OPA3	MGA3	optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	protein-coding
19-PTNLD28-TUMOR_peak_54718	chr2	107192853	107193015	+	3.57362	NA	Intergenic	L1MA7|LINE|L1	-108133	NM_001144013	653489	Hs.726367	NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2-like and GRIP domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_1431	chr1	23246289	23246377	+	3.57362	NA	Intergenic	Intergenic	45590	NM_001289974	646262		NM_001289974	ENSG00000215906	LACTBL1	-	lactamase, beta-like 1	protein-coding
19-PTNLD28-TUMOR_peak_16822	chr11	5145389	5145530	+	3.57362	NA	Intergenic	Intergenic	8413	NM_001005160	390054	Hs.546593	NM_001005160	HPRD:15005	OR52A5	OR11-33	olfactory receptor, family 52, subfamily A, member 5	protein-coding
19-PTNLD28-TUMOR_peak_56426	chr2	156878272	156878398	+	3.57362	NA	non-coding (NR_110249, exon 4 of 4)	non-coding (NR_110249, exon 4 of 4)	233108	NR_110249	101929378	Hs.171192	NR_110249		LOC101929378	-	uncharacterized LOC101929378	ncRNA
19-PTNLD28-TUMOR_peak_24539	chr12	54567238	54567326	+	3.57362	NA	Intergenic	Intergenic	15459	NM_001243789	23583	Hs.632721	NM_014311	HPRD:06376	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
19-PTNLD28-TUMOR_peak_9874	chr1	209542636	209542820	+	3.57362	NA	Intergenic	Intergenic	-59440	NM_001104548	642587	Hs.510543	NM_001104548		MIR205HG	LINC00510	MIR205 host gene (non-protein coding)	protein-coding
19-PTNLD28-TUMOR_peak_20695	chr11	95432531	95432619	+	3.57362	NA	Intergenic	Intergenic	90379	NM_144664	143684	Hs.288304	NM_144664	HPRD:11333	FAM76B	-	family with sequence similarity 76, member B	protein-coding
19-PTNLD28-TUMOR_peak_59625	chr20	4423847	4423935	+	3.57362	NA	Intergenic	Intergenic	-194232	NM_000678	146	Hs.557	NM_000678	HPRD:00079	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
19-PTNLD28-TUMOR_peak_85410	chr6	12277725	12277972	+	3.57362	NA	Intergenic	L2c|LINE|L2	-12681	NM_001168319	1906	Hs.511899	NM_001955	HPRD:07030	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
19-PTNLD28-TUMOR_peak_67918	chr3	46205143	46205275	+	3.57362	NA	Intergenic	L1PA12|LINE|L1	44623	NM_001295	1230	Hs.301921	NM_001295	HPRD:03101	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	chemokine (C-C motif) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_40175	chr17	9828166	9828295	+	3.57362	NA	intron (NM_201433, intron 11 of 13)	intron (NM_201433, intron 11 of 13)	-19546	NM_002903	5957	Hs.80539	NM_002903		RCVRN	RCV1	recoverin	protein-coding
19-PTNLD28-TUMOR_peak_58197	chr2	213093753	213093920	+	3.57362	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	197248	NR_031643	100313771		NR_031643		MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
19-PTNLD28-TUMOR_peak_35364	chr15	96856000	96856099	+	3.57362	NA	intron (NR_102743, intron 1 of 7)	intron (NR_102743, intron 1 of 7)	-13108	NM_001145155	7026	Hs.347991	NM_021005	HPRD:00139	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2, group F, member 2	protein-coding
19-PTNLD28-TUMOR_peak_48565	chr19	33964100	33964188	+	3.57362	NA	intron (NM_000285, intron 7 of 14)	intron (NM_000285, intron 7 of 14)	48655	NM_001166057	5184	Hs.36473	NM_000285	HPRD:01358	PEPD	PROLIDASE	peptidase D	protein-coding
19-PTNLD28-TUMOR_peak_72157	chr3	165460246	165460390	+	3.57362	NA	Intergenic	ERVL-int|LTR|ERVL	94935	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_5952	chr1	119952429	119952599	+	3.57362	NA	Intergenic	Intergenic	-5040	NM_001166120	3284	Hs.654399	NM_000198	HPRD:01941	HSD3B2	HSD3B|HSDB|SDR11E2	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein-coding
19-PTNLD28-TUMOR_peak_9342	chr1	202501469	202501557	+	3.57362	NA	intron (NM_002481, intron 18 of 23)	MER41B|LTR|ERV1	-7729	NM_001197131	4660	Hs.444403	NM_002481	HPRD:04794	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1, regulatory subunit 12B	protein-coding
19-PTNLD28-TUMOR_peak_79195	chr5	19240419	19240507	+	3.57362	NA	Intergenic	Intergenic	645918	NM_001291957	1016	Hs.317632	NM_004934	HPRD:04314	CDH18	CDH14|CDH14L|CDH24	cadherin 18, type 2	protein-coding
19-PTNLD28-TUMOR_peak_46164	chr18	64969422	64969510	+	3.57362	NA	Intergenic	Intergenic	-214317	NR_033921	643542	Hs.652901	NR_033921	ENSG00000265533	LOC643542	-	uncharacterized LOC643542	ncRNA
19-PTNLD28-TUMOR_peak_52401	chr2	43349163	43349334	+	3.57362	NA	Intergenic	Intergenic	-82566	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
19-PTNLD28-TUMOR_peak_28871	chr13	101751420	101751562	+	3.57362	NA	intron (NM_052867, intron 27 of 43)	intron (NM_052867, intron 27 of 43)	-154873	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
19-PTNLD28-TUMOR_peak_98758	chr8	54132155	54132260	+	3.57362	NA	Intergenic	Intergenic	31987	NM_000912	4986	Hs.106795	NM_000912	HPRD:01309	OPRK1	K-OR-1|KOR|KOR-1|OPRK	opioid receptor, kappa 1	protein-coding
19-PTNLD28-TUMOR_peak_69275	chr3	88252842	88252930	+	3.57362	NA	Intergenic	Intergenic	-53870	NM_001195308	8545	Hs.444818	NM_003663	HPRD:04529	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_80377	chr5	67342418	67342506	+	3.57362	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-143242	NR_105003	102467655	Hs.544102	NR_105003		LOC102467655	-	uncharacterized LOC102467655	ncRNA
19-PTNLD28-TUMOR_peak_6385	chr1	146327663	146327763	+	3.57362	NA	intron (NR_104217, intron 2 of 17).2	Tigger1|DNA|TcMar-Tigger	-46144	NM_001278141	149013	Hs.666981	NM_001278141	ENSG00000186275	NBPF12	COAS1|KIAA1245	neuroblastoma breakpoint family, member 12	protein-coding
19-PTNLD28-TUMOR_peak_77955	chr4	167677021	167677279	+	3.57362	NA	intron (NM_001204356, intron 6 of 9)	L1HS|LINE|L1	478427	NM_001204353	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_28865	chr13	101413926	101414057	+	3.57362	NA	intron (NR_047687, intron 2 of 7)	SVA_D|Other|Other	53412	NR_047687	100885778	Hs.602949	NR_047687	ENSG00000233009	NALCN-AS1	-	NALCN antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35709	chr16	1282436	1282543	+	3.57362	NA	Intergenic	L1MEc|LINE|L1	-2304	NM_024164	64499	Hs.405479	NM_024164	HPRD:10277	TPSB2	TPS2|tryptaseB|tryptaseC	tryptase beta 2 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_76391	chr4	100970014	100970128	+	3.57362	NA	Intergenic	L1PA3|LINE|L1	98435	NR_002799	256880	Hs.448554	NR_002799		LOC256880	-	uncharacterized LOC256880	ncRNA
19-PTNLD28-TUMOR_peak_109217	chrX	113839136	113839275	+	3.57362	NA	intron (NM_001256761, intron 1 of 5)	HERVH-int|LTR|ERV1	20654	NM_001256760	3358	Hs.149037	NM_000868	HPRD:02429	HTR2C	5-HT2C|5-HTR2C|5HTR2C|HTR1C	5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled	protein-coding
19-PTNLD28-TUMOR_peak_66984	chr3	16918948	16919060	+	3.57362	NA	Intergenic	L2c|LINE|L2	-7448	NM_001144382	23228	Hs.741267	NM_015184	HPRD:07147	PLCL2	PLCE2	phospholipase C-like 2	protein-coding
19-PTNLD28-TUMOR_peak_74613	chr4	15692120	15692277	+	3.57362	NA	TTS (NM_001145191)	TTS (NM_001145191)	8846	NM_001145191	285550	Hs.399980	NM_001145191		FAM200B	-	family with sequence similarity 200, member B	protein-coding
19-PTNLD28-TUMOR_peak_78425	chr4	187614671	187614806	+	3.57362	NA	intron (NM_005245, intron 2 of 26)	MLT1H|LTR|ERVL-MaLR	30249	NM_005245	2195	Hs.481371	NM_005245	HPRD:02986	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding
19-PTNLD28-TUMOR_peak_1902	chr1	29362521	29362609	+	3.57362	NA	intron (NM_203343, intron 9 of 16)	intron (NM_203343, intron 9 of 16)	86448	NM_001171868	399474	Hs.712722	NM_001003682	HPRD:13188	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
19-PTNLD28-TUMOR_peak_77802	chr4	158037239	158037391	+	3.57362	NA	intron (NM_000824, intron 2 of 9)	intron (NM_000824, intron 2 of 9)	39760	NM_001166060	2743	Hs.32973	NM_000824	HPRD:11751	GLRB	HKPX2	glycine receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_78027	chr4	170491239	170491426	+	3.57362	NA	intron (NM_001199398, intron 12 of 34)	SVA_D|Other|Other	42446	NM_012224	4750	Hs.481181	NM_012224	HPRD:06847	NEK1	NY-REN-55|SRPS2|SRPS2A|SRTD6	NIMA-related kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_11463	chr1	245747016	245747145	+	3.57362	NA	intron (NM_018012, intron 5 of 14)	intron (NM_018012, intron 5 of 14)	428793	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_78049	chr4	171901046	171901134	+	3.57362	NA	Intergenic	Intergenic	-60663	NR_038838	100506122	Hs.434205	NR_038838	ENSG00000248872	LOC100506122	-	uncharacterized LOC100506122	ncRNA
19-PTNLD28-TUMOR_peak_108324	chrX	50513747	50513873	+	3.57362	NA	intron (NM_020717, intron 1 of 8)	intron (NM_020717, intron 1 of 8)	43234	NR_027121	57477	Hs.420541	NM_020717	HPRD:17209	SHROOM4	SHAP	shroom family member 4	protein-coding
19-PTNLD28-TUMOR_peak_4533	chr1	83457457	83457545	+	3.57362	NA	Intergenic	Intergenic	-5610	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
19-PTNLD28-TUMOR_peak_77960	chr4	168155616	168155704	+	3.57362	NA	promoter-TSS (NM_001204358)	promoter-TSS (NM_001204358)	81	NM_001204354	50859	Hs.481133	NM_016950	HPRD:12147	SPOCK3	HSAJ1454|TES-3|TICN3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	protein-coding
19-PTNLD28-TUMOR_peak_12244	chr10	18601865	18601981	+	3.57362	NA	intron (NM_000724, intron 1 of 12)	MIR|SINE|MIR	-27691	NM_201590	783	Hs.59093	NM_000724	HPRD:02473	CACNB2	CACNLB2|CAVB2|MYSB	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
19-PTNLD28-TUMOR_peak_108973	chrX	100663384	100663501	+	3.57362	NA	promoter-TSS (NM_000169)	promoter-TSS (NM_000169)	321	NM_019597	3188	Hs.432485	NM_019597	HPRD:03022	HNRNPH2	FTP3|HNRPH'|HNRPH2|hnRNPH'	heterogeneous nuclear ribonucleoprotein H2 (H')	protein-coding
19-PTNLD28-TUMOR_peak_21008	chr11	107940756	107940902	+	3.57362	NA	exon (NM_003478, exon 8 of 19)	exon (NM_003478, exon 8 of 19)	-51429	NM_000019	38	Hs.232375	NM_000019	HPRD:01946	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_26051	chr12	107026678	107026864	+	3.57362	NA	intron (NM_213594, intron 2 of 17)	L2a|LINE|L2	31856	NM_001206691	5992	Hs.388827	NM_002920	HPRD:04905	RFX4	NYD-SP10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding
19-PTNLD28-TUMOR_peak_21994	chr11	126976292	126976380	+	3.57362	NA	Intergenic	Intergenic	39439	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
19-PTNLD28-TUMOR_peak_8635	chr1	181376269	181376507	+	3.57362	NA	Intergenic	Intergenic	-76298	NM_001205293	777	Hs.437444	NM_000721	HPRD:03006	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
19-PTNLD28-TUMOR_peak_31622	chr14	90085552	90085640	+	3.57362	NA	promoter-TSS (NM_001085471)	promoter-TSS (NM_001085471)	-102	NM_001085471	1112	Hs.434286	NM_005197	HPRD:07533	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
19-PTNLD28-TUMOR_peak_105026	chr9	103442326	103442420	+	3.57362	NA	Intergenic	Intergenic	102012	NM_001018116	347273	Hs.99004	NM_001018116	HPRD:18599	MURC	CAVIN4|cavin-4	muscle-related coiled-coil protein	protein-coding
19-PTNLD28-TUMOR_peak_98850	chr8	56725807	56725895	+	3.57362	NA	intron (NM_024831, intron 12 of 12)	intron (NM_024831, intron 12 of 12)	-39885	NM_001286661	137695	Hs.420076	NM_152417	HPRD:08128	TMEM68	-	transmembrane protein 68	protein-coding
19-PTNLD28-TUMOR_peak_85341	chr6	11350643	11350731	+	3.57362	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	31894	NM_001142393	4739	Hs.37982	NM_006403	HPRD:11888	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
19-PTNLD28-TUMOR_peak_24049	chr12	48405513	48405601	+	3.57362	NA	Intergenic	AluSq2|SINE|Alu	-7272	NM_033150	1280	Hs.408182	NM_001844	HPRD:00361	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen, type II, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_98907	chr8	58846543	58846631	+	3.57362	NA	Intergenic	MIR|SINE|MIR	-60526	NM_147189	90362	Hs.154652	NM_147189	HPRD:14609	FAM110B	C8orf72	family with sequence similarity 110, member B	protein-coding
19-PTNLD28-TUMOR_peak_85834	chr6	20279941	20280032	+	3.57362	NA	Intergenic	Intergenic	-67291	NM_001080480	154141	Hs.377830	NM_001080480		MBOAT1	1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_68868	chr3	66961153	66961296	+	3.57362	NA	Intergenic	Intergenic	-87503	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
19-PTNLD28-TUMOR_peak_40117	chr17	8630604	8630692	+	3.57362	NA	Intergenic	MLT2F|LTR|ERVL	17506	NM_144681	146849	Hs.121438	NM_144681	HPRD:08731	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
19-PTNLD28-TUMOR_peak_65187	chr22	32458702	32458818	+	3.57362	NA	intron (NM_001256314, intron 1 of 13)	intron (NM_001256314, intron 1 of 13)	3603	NM_001256314	6523	Hs.1964	NM_000343	HPRD:01668	SLC5A1	D22S675|NAGT|SGLT1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_19798	chr11	71384934	71385065	+	3.57362	NA	Intergenic	LTR5A|LTR|ERVK	-91078	NM_001005405	440051	Hs.679617	NM_001005405	HPRD:17248	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
19-PTNLD28-TUMOR_peak_52952	chr2	61186013	61186173	+	3.57362	NA	intron (NM_144709, intron 11 of 17)	intron (NM_144709, intron 11 of 17)	-58719	NM_002618	5194	Hs.161377	NM_002618	HPRD:03475	PEX13	NALD|PBD11A|PBD11B|ZWS	peroxisomal biogenesis factor 13	protein-coding
19-PTNLD28-TUMOR_peak_89836	chr6	146592451	146592549	+	3.57362	NA	intron (NM_001278065, intron 3 of 9)	intron (NM_001278065, intron 3 of 9)	242166	NM_001278064	2911	Hs.32945	NM_000838	HPRD:05129	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCAR13	glutamate receptor, metabotropic 1	protein-coding
19-PTNLD28-TUMOR_peak_67377	chr3	31268779	31268867	+	3.57362	NA	Intergenic	Intergenic	-305170	NM_178862	201595	Hs.475812	NM_178862		STT3B	CDG1X|SIMP|STT3-B	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	protein-coding
19-PTNLD28-TUMOR_peak_87916	chr6	51739750	51739848	+	3.57362	NA	intron (NM_138694, intron 46 of 66)	L1HS|LINE|L1	212624	NM_170724	5314	Hs.662050	NM_138694	HPRD:05987	PKHD1	ARPKD|FCYT|TIGM1	polycystic kidney and hepatic disease 1 (autosomal recessive)	protein-coding
19-PTNLD28-TUMOR_peak_53261	chr2	68841308	68841489	+	3.57362	NA	Intergenic	L1PA3|LINE|L1	-31556	NM_138964	10887	Hs.683430	NM_138964	HPRD:08452	PROKR1	GPR73|GPR73a|PKR1|ZAQ	prokineticin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_10005	chr1	212951801	212951980	+	3.57362	NA	intron (NM_001042549, intron 4 of 6)	SVA_D|Other|Other	13249	NM_015471	25936	Hs.497692	NM_015471	HPRD:12378	NSL1	C1orf48|MIS14	NSL1, MIS12 kinetochore complex component	protein-coding
19-PTNLD28-TUMOR_peak_21076	chr11	110208661	110208751	+	3.57362	NA	Intergenic	MER41B|LTR|ERV1	-41269	NM_002906	5962	Hs.263671	NM_002906	HPRD:01534	RDX	DFNB24	radixin	protein-coding
19-PTNLD28-TUMOR_peak_84377	chr5	177513370	177513467	+	3.57362	NA	Intergenic	Intergenic	-27138	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_9818	chr1	207627522	207627643	+	3.57362	NA	promoter-TSS (NM_001877)	promoter-TSS (NM_001877)	-63	NM_001006658	1380	Hs.445757	NM_001877	HPRD:00399	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement component (3d/Epstein Barr virus) receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_20720	chr11	95847975	95848063	+	3.57362	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-190648	NM_016156	8898	Hs.181326	NM_016156	HPRD:04650	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_98691	chr8	49812032	49812120	+	3.57362	NA	Intergenic	Intergenic	21923	NM_003068	6591	Hs.360174	NM_003068	HPRD:03689	SNAI2	SLUG|SLUGH1|SNAIL2|WS2D	snail family zinc finger 2	protein-coding
19-PTNLD28-TUMOR_peak_65873	chr22	44963304	44963392	+	3.57362	NA	Intergenic	Intergenic	-1872	NR_028411	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_32596	chr15	23932482	23932570	+	3.57362	NA	promoter-TSS (NM_002487)	promoter-TSS (NM_002487)	-76	NM_002487	4692	Hs.50130	NM_002487	HPRD:03667	NDN	HsT16328|PWCR	necdin, melanoma antigen (MAGE) family member	protein-coding
19-PTNLD28-TUMOR_peak_51300	chr2	16185287	16185375	+	3.57362	NA	Intergenic	Tigger14a|DNA|TcMar-Tigger	-103486	NR_110230	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
19-PTNLD28-TUMOR_peak_86782	chr6	32967986	32968074	+	3.57362	NA	Intergenic	Intergenic	9359	NM_002119	3111	Hs.631991	NM_002119	HPRD:00837	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
19-PTNLD28-TUMOR_peak_10026	chr1	214490069	214490210	+	3.57362	NA	intron (NM_020197, intron 3 of 11)	intron (NM_020197, intron 3 of 11)	35574	NM_020197	56950	Hs.66170	NM_020197	HPRD:15406	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_89287	chr6	119862294	119862512	+	3.57362	NA	Intergenic	L1MEf|LINE|L1	-49936	NR_046100	285762	Hs.571063	NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
19-PTNLD28-TUMOR_peak_90509	chr6	167171275	167171424	+	3.57362	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	104422	NM_001006932	6196	Hs.655277	NM_021135	HPRD:03403	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3	ribosomal protein S6 kinase, 90kDa, polypeptide 2	protein-coding
19-PTNLD28-TUMOR_peak_1933	chr1	30122416	30122504	+	3.57362	NA	Intergenic	L2a|LINE|L2	387999	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LOC101929406	-	uncharacterized LOC101929406	ncRNA
19-PTNLD28-TUMOR_peak_78132	chr4	177922524	177922612	+	3.57362	NA	Intergenic	Intergenic	-208669	NM_005429	7424	Hs.435215	NM_005429	HPRD:03317	VEGFC	Flt4-L|LMPH1D|VRP	vascular endothelial growth factor C	protein-coding
19-PTNLD28-TUMOR_peak_67819	chr3	44928174	44928262	+	3.57362	NA	intron (NM_003241, intron 2 of 13)	L2a|LINE|L2	12120	NM_003241	7047	Hs.438265	NM_003241	HPRD:08997	TGM4	TGP|hTGP	transglutaminase 4	protein-coding
19-PTNLD28-TUMOR_peak_102614	chr9	31356081	31356239	+	3.57362	NA	Intergenic	Intergenic	-947708	NR_046204	401497	Hs.680131	NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
19-PTNLD28-TUMOR_peak_36105	chr16	7664311	7664434	+	3.57362	NA	intron (NM_001142333, intron 10 of 14)	intron (NM_001142333, intron 10 of 14)	281621	NM_145893	54715	Hs.459842	NM_018723	HPRD:16091	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
19-PTNLD28-TUMOR_peak_54700	chr2	106763846	106763934	+	3.57362	NA	intron (NR_045607, intron 4 of 13)	LTR39|LTR|ERV1	-8553	NM_001253876	80146	Hs.469561	NM_025076	HPRD:15642	UXS1	SDR6E1|UGD	UDP-glucuronate decarboxylase 1	protein-coding
19-PTNLD28-TUMOR_peak_84184	chr5	175017679	175017767	+	3.57362	NA	Intergenic	Intergenic	-67317	NM_001131055	3274	Hs.247885	NM_022304	HPRD:00816	HRH2	H2R	histamine receptor H2	protein-coding
19-PTNLD28-TUMOR_peak_59383	chr20	354294	354489	+	3.57362	NA	Intergenic	Intergenic	-6882	NM_021158	57761	Hs.516826	NM_021158	HPRD:09836	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
19-PTNLD28-TUMOR_peak_51916	chr2	29850420	29850508	+	3.57362	NA	intron (NM_004304, intron 3 of 28)	intron (NM_004304, intron 3 of 28)	294013	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_46685	chr19	2887613	2887704	+	3.57362	NA	Intergenic	Intergenic	-13238	NM_173480	126295	Hs.591378	NM_173480	HPRD:14034	ZNF57	ZNF424	zinc finger protein 57	protein-coding
19-PTNLD28-TUMOR_peak_25161	chr12	68891581	68891743	+	3.57362	NA	Intergenic	L2c|LINE|L2	-46398	NR_120458	100507195	Hs.450772	NR_120458		LOC100507195	-	uncharacterized LOC100507195	ncRNA
19-PTNLD28-TUMOR_peak_81539	chr5	111510671	111510909	+	3.57362	NA	intron (NM_022140, intron 18 of 22)	intron (NM_022140, intron 18 of 22)	13608	NR_002922	654322	Hs.689709	NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
19-PTNLD28-TUMOR_peak_40853	chr17	27674899	27675032	+	3.57362	NA	Intergenic	AluJr|SINE|Alu	-42715	NR_039749	100616122		NR_039749	miRBase:MI0016890	MIR4523	-	microRNA 4523	ncRNA
19-PTNLD28-TUMOR_peak_33679	chr15	56932017	56932144	+	3.57362	NA	intron (NM_001002843, intron 19 of 20)	HAL1|LINE|L1	94204	NM_017661	54816	Hs.511477	NM_017661	HPRD:15448	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
19-PTNLD28-TUMOR_peak_41488	chr17	40051331	40051419	+	3.57362	NA	intron (NM_198830, intron 13 of 27)	MIR3|SINE|MIR	23897	NM_198830	47	Hs.387567	NM_001096	HPRD:00155	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
19-PTNLD28-TUMOR_peak_89927	chr6	149765425	149765577	+	3.57362	NA	Intergenic	(CAGT)n|Simple_repeat|Simple_repeat	40647	NM_207360	340152	Hs.632618	NM_207360		ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
19-PTNLD28-TUMOR_peak_70183	chr3	122738150	122738294	+	3.57362	NA	intron (NR_046079, intron 1 of 22)	AluJb|SINE|Alu	8437	NM_001256348	54437	Hs.210870	NM_018987	HPRD:15322	SEMA5B	SEMAG|SemG	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding
19-PTNLD28-TUMOR_peak_8861	chr1	185328097	185328317	+	3.57362	NA	Intergenic	L1P4a|LINE|L1	-24036	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule-associated protein 1 light chain 3 beta pseudogene	pseudo
19-PTNLD28-TUMOR_peak_26587	chr12	118744914	118745002	+	3.57362	NA	intron (NM_016281, intron 1 of 20)	intron (NM_016281, intron 1 of 20)	65792	NM_016281	51347	Hs.644420	NM_016281	HPRD:11620	TAOK3	DPK|JIK|MAP3K18	TAO kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_108799	chrX	75798506	75798594	+	3.57362	NA	Intergenic	L1PA2|LINE|L1	150504	NM_020932	57692	Hs.8453	NM_020932	HPRD:06583	MAGEE1	DAMAGE|HCA1	melanoma antigen family E, 1	protein-coding
19-PTNLD28-TUMOR_peak_67017	chr3	17886576	17886683	+	3.57362	NA	Intergenic	Intergenic	-104230	NM_014744	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_11992	chr10	11220729	11220893	+	3.57362	NA	intron (NM_001025076, intron 2 of 14)	intron (NM_001025076, intron 2 of 14)	13818	NM_001083591	10659	Hs.309288	NM_006561	HPRD:03964	CELF2	BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_56107	chr2	143451315	143451578	+	3.57362	NA	Intergenic	L1PBa|LINE|L1	-183749	NM_003937	8942	Hs.470126	NM_003937	HPRD:08940	KYNU	-	kynureninase	protein-coding
19-PTNLD28-TUMOR_peak_97421	chr8	19466233	19466321	+	3.57362	NA	intron (NR_024040, intron 1 of 9)	intron (NR_024040, intron 1 of 9)	-6221	NM_001130518	55790	Hs.613729	NM_018371	HPRD:13114	CSGALNACT1	CSGalNAcT-1|ChGn|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_69265	chr3	87487045	87487175	+	3.57362	NA	Intergenic	Intergenic	-161373	NM_001122757	5449	Hs.591654	NM_000306	HPRD:01409	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_22566	chr12	3794168	3794256	+	3.57362	NA	intron (NM_032680, intron 4 of 10)	LTR18B|LTR|ERVL	68154	NM_001144958	84766	Hs.504534	NM_032680	HPRD:10079	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
19-PTNLD28-TUMOR_peak_88944	chr6	106211530	106211618	+	3.57362	NA	Intergenic	Intergenic	-322621	NM_001198	639	Hs.436023	NM_001198	HPRD:04572	PRDM1	BLIMP1|PRDI-BF1	PR domain containing 1, with ZNF domain	protein-coding
19-PTNLD28-TUMOR_peak_45522	chr18	44298735	44298916	+	3.57362	NA	intron (NM_013305, intron 1 of 6)	intron (NM_013305, intron 1 of 6)	38214	NM_013305	29906	Hs.465025	NM_013305	HPRD:06199	ST8SIA5	SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
19-PTNLD28-TUMOR_peak_97072	chr8	8820922	8821112	+	3.57362	NA	Intergenic	CpG	-39297	NM_153332	90459	Hs.20000	NM_153332	HPRD:11784	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
19-PTNLD28-TUMOR_peak_87940	chr6	52319511	52319637	+	3.57362	NA	intron (NM_018100, intron 5 of 10)	intron (NM_018100, intron 5 of 10)	33769	NM_001172420	114327	Hs.403171	NM_018100	HPRD:10583	EFHC1	EJM1|dJ304B14.2	EF-hand domain (C-terminal) containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27662	chr13	30623972	30624060	+	3.57362	NA	Intergenic	Intergenic	113348	NR_033889	440131	Hs.132371	NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
19-PTNLD28-TUMOR_peak_75727	chr4	76837282	76837370	+	3.57362	NA	intron (NM_014435, intron 9 of 10)	intron (NM_014435, intron 9 of 10)	-13645	NM_006239	5470	Hs.290873	NM_006239	HPRD:03771	PPEF2	PPP7CB	protein phosphatase, EF-hand calcium binding domain 2	protein-coding
19-PTNLD28-TUMOR_peak_60192	chr20	23122909	23123087	+	3.57362	NA	Intergenic	Intergenic	-9725	NR_034149	200261	Hs.352228	NM_182535	HPRD:14124	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
19-PTNLD28-TUMOR_peak_10075	chr1	218527204	218527351	+	3.57362	NA	intron (NM_003238, intron 1 of 6)	L2c|LINE|L2	-8257	NR_046268	728463	Hs.568469	NR_046268	ENSG00000232480	TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_57024	chr2	174314068	174314246	+	3.57362	NA	Intergenic	LTR41B|LTR|ERVL	94596	NM_145810	83879	Hs.470654	NM_031942	HPRD:09874	CDCA7	JPO1	cell division cycle associated 7	protein-coding
19-PTNLD28-TUMOR_peak_72162	chr3	165570121	165570267	+	3.57362	NA	Intergenic	Intergenic	-14941	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_38168	chr16	61952660	61952783	+	3.57362	NA	intron (NM_001796, intron 2 of 11)	L1HS|LINE|L1	118018	NM_001796	1006	Hs.368322	NM_001796	HPRD:04306	CDH8	Nbla04261	cadherin 8, type 2	protein-coding
19-PTNLD28-TUMOR_peak_85691	chr6	17086048	17086136	+	3.57362	NA	Intergenic	Intergenic	-16397	NM_001190766	401236	Hs.677399	NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_16283	chr10	131516915	131517041	+	3.57362	NA	intron (NM_002412, intron 3 of 4)	intron (NM_002412, intron 3 of 4)	124660	NR_036179	100422873		NR_036179		MIR4297	-	microRNA 4297	ncRNA
19-PTNLD28-TUMOR_peak_45618	chr18	45991689	45991777	+	3.57362	NA	Intergenic	Intergenic	-73694	NM_014772	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_40159	chr17	9479075	9479163	+	3.57362	NA	promoter-TSS (NM_001080556)	promoter-TSS (NM_001080556)	156	NM_004853	9482	Hs.431109	NM_004853		STX8	CARB	syntaxin 8	protein-coding
19-PTNLD28-TUMOR_peak_38094	chr16	57951143	57951274	+	3.57362	NA	exon (NM_001286130, exon 21 of 33)	exon (NM_001286130, exon 21 of 33)	53812	NM_001135639	1258	Hs.147062	NM_001297	HPRD:07204	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel beta 1	protein-coding
19-PTNLD28-TUMOR_peak_17209	chr11	12125487	12125637	+	3.57362	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-6561	NM_014632	9645	Hs.501928	NM_014632	HPRD:10085	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_28981	chr13	107558189	107558477	+	3.57362	NA	Intergenic	Intergenic	252105	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
19-PTNLD28-TUMOR_peak_41082	chr17	33700689	33700777	+	3.57362	NA	promoter-TSS (NM_001104589)	promoter-TSS (NM_001104589)	-13	NM_152270	91607	Hs.745059	NM_152270	HPRD:08178	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
19-PTNLD28-TUMOR_peak_67018	chr3	17902708	17902823	+	3.57362	NA	Intergenic	L1HS|LINE|L1	-101299	NM_001257177	339862	Hs.652981	NM_001257177		LOC339862	-	uncharacterized LOC339862	protein-coding
19-PTNLD28-TUMOR_peak_63495	chr21	39512713	39512836	+	3.57362	NA	intron (NR_026839, intron 2 of 2)	intron (NR_026839, intron 2 of 2)	19229	NR_026839	84677	Hs.733345	NM_032589	HPRD:10924	DSCR8	C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2	Down syndrome critical region gene 8	ncRNA
19-PTNLD28-TUMOR_peak_55494	chr2	124271079	124271244	+	3.57362	NA	Intergenic	Intergenic	-511703	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_21537	chr11	118838454	118838623	+	3.57362	NA	Intergenic	AluY|SINE|Alu	-3879	NM_181721	283150	Hs.116679	NM_181721	HPRD:13551	FOXR1	FOXN5	forkhead box R1	protein-coding
19-PTNLD28-TUMOR_peak_33852	chr15	62126436	62126524	+	3.57362	NA	Intergenic	Intergenic	226184	NM_017684	54832	Hs.511668	NM_017684	HPRD:12323	VPS13C	-	vacuolar protein sorting 13 homolog C (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_14933	chr10	94581915	94582028	+	3.57362	NA	Intergenic	Intergenic	-12499	NM_001013848	54536	Hs.655657	NM_019053	HPRD:10216	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
19-PTNLD28-TUMOR_peak_15693	chr10	114635707	114635821	+	3.57362	NA	Intergenic	MIR3|SINE|MIR	52509	NR_120684	103344931	Hs.458447	NR_120684		LOC103344931	-	uncharacterized LOC103344931	ncRNA
19-PTNLD28-TUMOR_peak_23698	chr12	32996550	32996712	+	3.57362	NA	intron (NM_004572, intron 5 of 13)	intron (NM_004572, intron 5 of 13)	53149	NM_004572	5318	Hs.164384	NM_004572	HPRD:04177	PKP2	ARVD9	plakophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_67001	chr3	17625142	17625230	+	3.57362	NA	intron (NM_001134381, intron 3 of 23)	AluSx|SINE|Alu	116326	NM_001134381	9779	Hs.475629	NM_014744	HPRD:10262	TBC1D5	-	TBC1 domain family, member 5	protein-coding
19-PTNLD28-TUMOR_peak_107683	chrX	17430801	17430935	+	3.57362	NA	intron (NM_001291867, intron 1 of 8)	intron (NM_001291867, intron 1 of 8)	-13136	NR_039925	100616249		NR_039925		MIR4768	-	microRNA 4768	ncRNA
19-PTNLD28-TUMOR_peak_90622	chr6	169390950	169391109	+	3.57362	NA	Intergenic	Intergenic	263180	NM_003247	7058	Hs.371147	NM_003247	HPRD:01766	THBS2	TSP2	thrombospondin 2	protein-coding
19-PTNLD28-TUMOR_peak_77407	chr4	145512655	145512743	+	3.57362	NA	Intergenic	Intergenic	-54449	NM_022475	64399	Hs.507991	NM_022475		HHIP	HIP	hedgehog interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_61475	chr20	45653135	45653260	+	3.57362	NA	intron (NM_005244, intron 5 of 15)	L1MEc|LINE|L1	129934	NM_172110	2139	Hs.472877	NM_005244	HPRD:09041	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
19-PTNLD28-TUMOR_peak_77933	chr4	166143276	166143569	+	3.57362	NA	intron (NM_001161522, intron 2 of 13)	MIR3|SINE|MIR	12251	NM_001161522	11275	Hs.388668	NM_007246	HPRD:09311	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_7478	chr1	158581847	158582056	+	3.57362	NA	intron (NM_003126, intron 51 of 51)	intron (NM_003126, intron 51 of 51)	5722	NM_001004478	128368	Hs.553590	NM_001004478	HPRD:14898	OR10Z1	OR1-15	olfactory receptor, family 10, subfamily Z, member 1	protein-coding
19-PTNLD28-TUMOR_peak_91721	chr7	26503834	26503999	+	3.57362	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	60808	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
19-PTNLD28-TUMOR_peak_21607	chr11	119835355	119835515	+	3.57362	NA	Intergenic	Intergenic	173428	NM_012101	23650	Hs.504115	NM_012101	HPRD:10280	TRIM29	ATDC	tripartite motif containing 29	protein-coding
19-PTNLD28-TUMOR_peak_33569	chr15	51633814	51633902	+	3.57362	NA	5' UTR (NM_181789, exon 1 of 10)	5' UTR (NM_181789, exon 1 of 10)	145	NM_181789	342035	Hs.526441	NM_181789	HPRD:12267	GLDN	CLOM|COLM|CRG-L2|CRGL2|UNC-112	gliomedin	protein-coding
19-PTNLD28-TUMOR_peak_37854	chr16	53544437	53544525	+	3.57362	NA	Intergenic	Intergenic	-7311	NM_022476	64400	Hs.380897	NM_022476	HPRD:07467	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_24830	chr12	58677447	58677618	+	3.57362	NA	Intergenic	L2a|LINE|L2	342087	NM_033276	91419	Hs.61188	NM_033276	HPRD:17256	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_28826	chr13	99811260	99811348	+	3.57362	NA	Intergenic	Intergenic	-41375	NM_001144072	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_20994	chr11	107670144	107670292	+	3.57362	NA	intron (NM_017515, intron 7 of 7)	intron (NM_017515, intron 7 of 7)	59696	NM_017515	54733	Hs.524014	NM_017515	HPRD:15377	SLC35F2	HSNOV1	solute carrier family 35, member F2	protein-coding
19-PTNLD28-TUMOR_peak_46770	chr19	4124222	4124392	+	3.57362	NA	promoter-TSS (NM_030662)	promoter-TSS (NM_030662)	-181	NM_030662	5605	Hs.465627	NM_030662	HPRD:03164	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_60056	chr20	18869779	18869920	+	3.57362	NA	Intergenic	Intergenic	-59010	NM_001242671	100128496	Hs.664484	NM_001242671	ENSG00000149443	C20orf78	dJ1068E13.1	chromosome 20 open reading frame 78	protein-coding
19-PTNLD28-TUMOR_peak_90276	chr6	158640358	158640529	+	3.57362	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	51064	NM_207118	404672	Hs.356224	NM_207118	HPRD:10581	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2	general transcription factor IIH, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_44434	chr18	7711719	7711826	+	3.57362	NA	intron (NM_001105244, intron 1 of 32)	L1P3|LINE|L1	144458	NM_001105244	5797	Hs.49774	NM_002845	HPRD:01479	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type, M	protein-coding
19-PTNLD28-TUMOR_peak_56931	chr2	172003710	172003798	+	3.57362	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	13656	NM_012290	9874	Hs.744917	NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled-like kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_77393	chr4	144695235	144695355	+	3.57362	NA	Intergenic	L1PA16|LINE|L1	-73467	NM_001168235	166752	Hs.252714	NM_001168235	ENSG00000183090	FREM3	-	FRAS1 related extracellular matrix 3	protein-coding
19-PTNLD28-TUMOR_peak_76998	chr4	128347256	128347387	+	3.57362	NA	Intergenic	L1PB1|LINE|L1	-206766	NM_015693	27152	Hs.391481	NM_015693		INTU	INT|PDZD6|PDZK6	inturned planar cell polarity protein	protein-coding
19-PTNLD28-TUMOR_peak_66244	chr3	4744908	4745065	+	3.57362	NA	intron (NM_001168272, intron 35 of 60)	MER103C|DNA|hAT-Charlie	48288	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_20871	chr11	102524816	102524904	+	3.57362	NA	Intergenic	Intergenic	-28797	NM_004771	9313	Hs.591946	NM_004771	HPRD:05218	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
19-PTNLD28-TUMOR_peak_92173	chr7	42702729	42702831	+	3.57362	NA	intron (NR_110833, intron 2 of 2)	L2|LINE|L2	43266	NR_110833	101928795	Hs.566753	NR_110833	ENSG00000238284	LINC01448	-	long intergenic non-protein coding RNA 1448	ncRNA
19-PTNLD28-TUMOR_peak_48998	chr19	39863203	39863335	+	3.57362	NA	intron (NM_018028, intron 6 of 15)	intron (NM_018028, intron 6 of 15)	18566	NM_001256826	54623	Hs.466714	NM_019088	HPRD:10140	PAF1	F23149_1|PD2	Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_10141	chr1	220636206	220636294	+	3.57362	NA	Intergenic	MER52C|LTR|ERV1	-65275	NM_001286126	4139	Hs.497806	NM_018650	HPRD:07353	MARK1	MARK|Par-1c|Par1c	MAP/microtubule affinity-regulating kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_83353	chr5	153472117	153472223	+	3.57362	NA	Intergenic	Intergenic	53651	NM_001135037	4238	Hs.432818	NM_005927	HPRD:02731	MFAP3	-	microfibrillar-associated protein 3	protein-coding
19-PTNLD28-TUMOR_peak_37918	chr16	55442676	55442764	+	3.57362	NA	Intergenic	Intergenic	-70361	NM_004530	4313	Hs.513617	NM_004530	HPRD:00386	MMP2	CLG4|CLG4A|MMP-II|MONA|TBE-1	matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	protein-coding
19-PTNLD28-TUMOR_peak_106403	chr9	132672972	132673070	+	3.57362	NA	intron (NM_015033, intron 11 of 16)	intron (NM_015033, intron 11 of 16)	41137	NR_106914	102466750		NR_106914		MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
19-PTNLD28-TUMOR_peak_67293	chr3	28241834	28241950	+	3.57362	NA	Intergenic	LTR12C|LTR|ERV1	-41232	NM_182523	152100	Hs.444724	NM_182523		CMC1	C3orf68	C-x(9)-C motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_76162	chr4	87916874	87917216	+	3.57362	NA	intron (NM_001166693, intron 2 of 20)	SVA_D|Other|Other	-11108	NM_005935	4299	Hs.480190	NM_005935	HPRD:08871	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_94769	chr7	107046126	107046275	+	3.57362	NA	intron (NM_181733, intron 7 of 20)	MLT1A0|LTR|ERVL-MaLR	-64302	NM_005295	2845	Hs.657277	NM_005295	HPRD:03552	GPR22	-	G protein-coupled receptor 22	protein-coding
19-PTNLD28-TUMOR_peak_56961	chr2	172829236	172829443	+	3.57362	NA	intron (NM_003642, intron 8 of 10)	intron (NM_003642, intron 8 of 10)	-35465	NM_199227	254042	Hs.298250	NM_199227		METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding
19-PTNLD28-TUMOR_peak_52921	chr2	59377745	59377872	+	3.57362	NA	Intergenic	Intergenic	-67035	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LOC101927285	-	uncharacterized LOC101927285	ncRNA
19-PTNLD28-TUMOR_peak_80243	chr5	63801717	63801859	+	3.57362	NA	promoter-TSS (NM_001029875)	promoter-TSS (NM_001029875)	14	NM_001029875	401190	Hs.657133	NM_001029875	ENSG00000186479	RGS7BP	R7BP	regulator of G-protein signaling 7 binding protein	protein-coding
19-PTNLD28-TUMOR_peak_10074	chr1	218518585	218518741	+	3.57362	NA	promoter-TSS (NM_003238)	promoter-TSS (NM_003238)	-13	NM_003238	7042	Hs.133379	NM_003238	HPRD:01828	TGFB2	LDS4|TGF-beta2	transforming growth factor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_25331	chr12	73547137	73547310	+	3.57362	NA	Intergenic	L1PA2|LINE|L1	-5747	NR_110130	101928137	Hs.694666	NR_110130	ENSG00000258123	LOC101928137	-	uncharacterized LOC101928137	ncRNA
19-PTNLD28-TUMOR_peak_102033	chr9	4425453	4425541	+	3.57362	NA	Intergenic	Intergenic	-64930	NM_004170	6505	Hs.444915	NM_004170	HPRD:00597	SLC1A1	EAAC1|EAAT3|SCZD18	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding
19-PTNLD28-TUMOR_peak_15790	chr10	116423604	116423760	+	3.57362	NA	intron (NM_001003407, intron 1 of 21)	intron (NM_001003407, intron 1 of 21)	-5624	NM_002313	3983	Hs.438236	NM_002313	HPRD:03819	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
19-PTNLD28-TUMOR_peak_81970	chr5	127170006	127170094	+	3.57362	NA	Intergenic	MER34A1|LTR|ERV1	181343	NM_001127385	613212	Hs.66194	NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
19-PTNLD28-TUMOR_peak_91339	chr7	15435901	15436093	+	3.57362	NA	intron (NM_001004320, intron 5 of 12)	LTR12D|LTR|ERV1	165643	NM_001004320	392636	Hs.670634	NM_001004320	HPRD:13362	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding
19-PTNLD28-TUMOR_peak_34062	chr15	66484001	66484110	+	3.57362	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	62020	NM_032445	84465	Hs.712886	NM_032445	HPRD:14385	MEGF11	-	multiple EGF-like-domains 11	protein-coding
19-PTNLD28-TUMOR_peak_57110	chr2	176884410	176884565	+	3.57362	NA	Intergenic	AluYc|SINE|Alu	-17469	NM_030650	80856	Hs.209561	NM_030650		KIAA1715	LNP|LNP1|Ul|ulnaless	KIAA1715	protein-coding
19-PTNLD28-TUMOR_peak_65387	chr22	37554053	37554161	+	3.57362	NA	Intergenic	L1MC4a|LINE|L1	-8145	NM_000878	3560	Hs.474787	NM_000878	HPRD:00896	IL2RB	CD122|IL15RB|P70-75	interleukin 2 receptor, beta	protein-coding
19-PTNLD28-TUMOR_peak_94877	chr7	112903530	112903653	+	3.57362	NA	Intergenic	L1PA3|LINE|L1	-144954	NR_024412	401397	Hs.117929	NR_015442	ENSG00000214194	LINC00998	-	long intergenic non-protein coding RNA 998	ncRNA
19-PTNLD28-TUMOR_peak_21652	chr11	120410782	120410934	+	3.57362	NA	intron (NM_014619, intron 1 of 20)	CR1_Mam|LINE|CR1	-24287	NM_001282470	2900	Hs.538738	NM_014619	HPRD:02613	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
19-PTNLD28-TUMOR_peak_23901	chr12	45585186	45585358	+	3.57362	NA	intron (NR_037144, intron 1 of 2)	L2c|LINE|L2	-4020	NR_001571	6090		NR_001571	ENSG00000252310	RNY5	Y5	RNA, Ro-associated Y5	ncRNA
19-PTNLD28-TUMOR_peak_8495	chr1	178884492	178884580	+	3.57362	NA	intron (NM_001286247, intron 18 of 18)	AluSq2|SINE|Alu	-44321	NM_004673	9068	Hs.591474	NM_004673	HPRD:04851	ANGPTL1	ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2	angiopoietin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_4194	chr1	67772959	67773079	+	3.57362	NA	promoter-TSS (NM_001258215)	promoter-TSS (NM_001258215)	-28	NR_047584	3595	Hs.479347	NM_001559	HPRD:03383	IL12RB2	-	interleukin 12 receptor, beta 2	protein-coding
19-PTNLD28-TUMOR_peak_9441	chr1	203483757	203483895	+	3.57362	NA	Intergenic	Intergenic	20555	NM_014359	26254	Hs.632468	NM_014359	HPRD:05498	OPTC	OPT	opticin	protein-coding
19-PTNLD28-TUMOR_peak_78452	chr4	188153529	188153617	+	3.57362	NA	Intergenic	Intergenic	273194	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	ncRNA
19-PTNLD28-TUMOR_peak_59419	chr20	1190504	1190592	+	3.57362	NA	Intergenic	Intergenic	6450	NM_001009612	400831	Hs.148503	NM_001009612	HPRD:17387	C20orf202	-	chromosome 20 open reading frame 202	protein-coding
19-PTNLD28-TUMOR_peak_62798	chr21	16071982	16072070	+	3.57362	NA	Intergenic	Intergenic	-56598	NM_001256579	388813	Hs.334177	NM_001256579		LOC388813	-	uncharacterized protein ENSP00000383407-like	protein-coding
19-PTNLD28-TUMOR_peak_62639	chr20	62597042	62597159	+	3.57362	NA	intron (NM_020713, intron 5 of 16)	intron (NM_020713, intron 5 of 16)	4123	NM_020713	57473	Hs.740578	NM_020713	HPRD:13840	ZNF512B	GM632	zinc finger protein 512B	protein-coding
19-PTNLD28-TUMOR_peak_13742	chr10	60692799	60692907	+	3.57362	NA	Intergenic	MER21B|LTR|ERVL	-66425	NR_108046	100507008	Hs.170953	NR_108046		LINC00844	-	long intergenic non-protein coding RNA 844	ncRNA
19-PTNLD28-TUMOR_peak_9015	chr1	194264956	194265044	+	3.57362	NA	Intergenic	Intergenic	991125	NR_125789	101929184	Hs.146728	NR_125789		LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
19-PTNLD28-TUMOR_peak_34340	chr15	71544513	71544601	+	3.57362	NA	intron (NM_024817, intron 4 of 16)	intron (NM_024817, intron 4 of 16)	-63159	NR_120350	101929196	Hs.680472	NR_120348		LOC101929196	-	uncharacterized LOC101929196	ncRNA
19-PTNLD28-TUMOR_peak_62954	chr21	26412261	26412397	+	3.57362	NA	intron (NR_046198, intron 3 of 3)	intron (NR_046198, intron 3 of 3)	199465	NR_046198	339622	Hs.616316	NR_046198	ENSG00000226983	LOC339622	-	uncharacterized LOC339622	ncRNA
19-PTNLD28-TUMOR_peak_100434	chr8	122273293	122273539	+	3.57362	NA	Intergenic	Intergenic	-378170	NR_002835	594842	Hs.668686	NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_57719	chr2	201003578	201003806	+	3.57362	NA	Intergenic	Intergenic	-166912	NM_015535	26010	Hs.120323	NM_015535	HPRD:10916	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated, serine-rich 2-like	protein-coding
19-PTNLD28-TUMOR_peak_16061	chr10	124289730	124289952	+	3.57362	NA	Intergenic	Intergenic	-30340	NM_017579	1755	Hs.279611	NM_004406	HPRD:03575	DMBT1	GP340|muclin	deleted in malignant brain tumors 1	protein-coding
19-PTNLD28-TUMOR_peak_56808	chr2	168219566	168219806	+	3.57362	NA	Intergenic	Intergenic	175893	NM_001199145	129446	Hs.73680	NM_152381	HPRD:10267	XIRP2	CMYA3	xin actin-binding repeat containing 2	protein-coding
19-PTNLD28-TUMOR_peak_108100	chrX	45528430	45528548	+	3.57362	NA	Intergenic	Intergenic	-62088	NR_102268	392452	Hs.745266	NR_102268		LOC392452	-	mitochondrial fission factor pseudogene	pseudo
19-PTNLD28-TUMOR_peak_103670	chr9	71694217	71694362	+	3.57362	NA	TTS (NM_000144)	TTS (NM_000144)	-41891	NM_001170414	9414	Hs.50382	NM_004817	HPRD:06369	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
19-PTNLD28-TUMOR_peak_31963	chr14	98741494	98741623	+	3.57362	NA	Intergenic	Intergenic	-297097	NR_015430	388011	Hs.651477	NR_015430	ENSG00000246223	C14orf64	-	chromosome 14 open reading frame 64	ncRNA
19-PTNLD28-TUMOR_peak_47577	chr19	14005524	14005614	+	3.57362	NA	intron (NM_024323, intron 3 of 7)	intron (NM_024323, intron 3 of 7)	11340	NM_024323	79173	Hs.143288	NM_024323	HPRD:14415	C19orf57	-	chromosome 19 open reading frame 57	protein-coding
19-PTNLD28-TUMOR_peak_93909	chr7	91413863	91413983	+	3.57362	NA	Intergenic	Intergenic	96111	NM_001301135	7978	Hs.532216	NM_006980	HPRD:08373	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
19-PTNLD28-TUMOR_peak_35068	chr15	87399235	87399417	+	3.57362	NA	intron (NM_152336, intron 22 of 23)	intron (NM_152336, intron 22 of 23)	-539127	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_9488	chr1	204043759	204043847	+	3.57362	NA	intron (NM_005686, intron 1 of 13)	CpG	1557	NM_005686	9580	Hs.201671	NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY (sex determining region Y)-box 13	protein-coding
19-PTNLD28-TUMOR_peak_15056	chr10	98339811	98339978	+	3.57362	NA	intron (NM_020123, intron 1 of 14)	intron (NM_020123, intron 1 of 14)	6915	NM_020123	56889	Hs.500674	NM_020123	HPRD:18073	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
19-PTNLD28-TUMOR_peak_7812	chr1	163743823	163743911	+	3.57362	NA	Intergenic	Intergenic	-350886	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3, subunit J pseudogene	pseudo
19-PTNLD28-TUMOR_peak_13303	chr10	45693459	45693732	+	3.57362	NA	Intergenic	Intergenic	34133	NR_036112	100422988		NR_036112	miRBase:MI0014184	MIR3156-1	-	microRNA 3156-1	ncRNA
19-PTNLD28-TUMOR_peak_66550	chr3	10651004	10651197	+	3.57362	NA	Intergenic	Intergenic	17392	NR_046766	100874325	Hs.143004	NR_046766		ATP2B2-IT2	-	ATP2B2 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_108698	chrX	71265880	71266005	+	3.57362	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	1683	NR_002309	441502	Hs.449523	NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
19-PTNLD28-TUMOR_peak_98709	chr8	51517721	51517838	+	3.57362	NA	intron (NM_001287813, intron 14 of 19)	L1M1|LINE|L1	693440	NM_018967	54212	Hs.584914	NM_018967	HPRD:16373	SNTG1	G1SYN|SYN4	syntrophin, gamma 1	protein-coding
19-PTNLD28-TUMOR_peak_11659	chr10	1568899	1569061	+	3.57362	NA	non-coding (NR_033387, exon 1 of 2)	non-coding (NR_033387, exon 1 of 2)	155	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_58186	chr2	212352696	212352896	+	3.57362	NA	intron (NM_005235, intron 20 of 27)	intron (NM_005235, intron 20 of 27)	870501	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_74724	chr4	21389416	21389607	+	3.57362	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-83982	NM_147183	80333	Hs.655705	NM_025221	HPRD:12184	KCNIP4	CALP|KCHIP4	Kv channel interacting protein 4	protein-coding
19-PTNLD28-TUMOR_peak_34050	chr15	66299382	66299530	+	3.57362	NA	intron (NM_032445, intron 5 of 22)	intron (NM_032445, intron 5 of 22)	-33115	NR_036196	100422905		NR_036196	miRBase:MI0015841	MIR4311	-	microRNA 4311	ncRNA
19-PTNLD28-TUMOR_peak_81868	chr5	124322522	124322641	+	3.57362	NA	Intergenic	Intergenic	-49943	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA
19-PTNLD28-TUMOR_peak_92022	chr7	36201728	36201860	+	3.57362	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	8958	NM_030636	80820	Hs.487994	NM_030636	HPRD:13884	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_110074	chrY	1343733	1343899	+	3.57362	NA	intron (NM_006140, intron 2 of 12).2	intron (NM_006140, intron 2 of 12).2	6123	NM_172246	1438	Hs.520937	NM_006140	HPRD:02381	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding
19-PTNLD28-TUMOR_peak_12650	chr10	29669699	29669796	+	3.57362	NA	Intergenic	Intergenic	-28716	NR_110923	102724316	Hs.499209	NR_003930		SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_77288	chr4	141516273	141516476	+	3.57362	NA	Intergenic	L1PA15-16|LINE|L1	-26415	NM_021833	7350	Hs.249211	NM_021833		UCP1	SLC25A7|UCP	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding
19-PTNLD28-TUMOR_peak_89562	chr6	135241667	135241755	+	3.57362	NA	intron (NM_170771, intron 5 of 5)	intron (NM_170771, intron 5 of 5)	29549	NM_170771	64577	Hs.486520	NM_022568	HPRD:06974	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family, member A1	protein-coding
19-PTNLD28-TUMOR_peak_69704	chr3	111044156	111044369	+	3.57362	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-216664	NM_005816	10225	Hs.142023	NM_005816	HPRD:06916	CD96	TACTILE	CD96 molecule	protein-coding
19-PTNLD28-TUMOR_peak_64874	chr22	26925467	26925584	+	3.57362	NA	intron (NM_001008566, intron 5 of 6)	MER21B|LTR|ERVL	-17088	NM_001008697	24144	Hs.20225	NM_012143	HPRD:11628	TFIP11	NTR1|Spp382|TIP39|bK445C9.6|hNtr1	tuftelin interacting protein 11	protein-coding
19-PTNLD28-TUMOR_peak_18655	chr11	57327807	57328019	+	3.57362	NA	intron (NM_198183, intron 1 of 3)	intron (NM_198183, intron 1 of 3)	7267	NM_004223	9246	Hs.425777	NM_004223	HPRD:04867	UBE2L6	RIG-B|UBCH8	ubiquitin-conjugating enzyme E2L 6	protein-coding
19-PTNLD28-TUMOR_peak_80623	chr5	72677532	72677642	+	3.57362	NA	Intergenic	CpG	66765	NM_004472	2297	Hs.519385	NM_004472	HPRD:03055	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
19-PTNLD28-TUMOR_peak_53379	chr2	70943683	70943787	+	3.57362	NA	intron (NM_017482, intron 1 of 12)	L2b|LINE|L2	51112	NM_001185054	119	Hs.188528	NM_001617	HPRD:00037	ADD2	ADDB	adducin 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_105395	chr9	113403294	113403479	+	3.57362	NA	Intergenic	Intergenic	-27665	NM_001166281	4593	Hs.521653	NM_005592	HPRD:03190	MUSK	-	muscle, skeletal, receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_109693	chrX	147582443	147582609	+	3.57362	NA	5' UTR (NM_001169123, exon 1 of 21)	5' UTR (NM_001169123, exon 1 of 21)	387	NM_001169122	2334	Hs.496911	NM_002025	HPRD:02397	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19	AF4/FMR2 family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_35498	chr15	101245031	101245119	+	3.57362	NA	Intergenic	L2c|LINE|L2	102320	NM_198243	140460	Hs.31845	NM_024708	HPRD:10674	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
19-PTNLD28-TUMOR_peak_55028	chr2	113416715	113416901	+	3.57362	NA	exon (NM_005415, exon 8 of 11)	exon (NM_005415, exon 8 of 11)	13374	NM_005415	6574	Hs.187946	NM_005415	HPRD:08846	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 (phosphate transporter), member 1	protein-coding
19-PTNLD28-TUMOR_peak_31825	chr14	94532514	94532710	+	3.57362	NA	intron (NM_020414, intron 2 of 8)	L1PB1|LINE|L1	14946	NM_020414	57062	Hs.510328	NM_020414	HPRD:05860	DDX24	-	DEAD (Asp-Glu-Ala-Asp) box helicase 24	protein-coding
19-PTNLD28-TUMOR_peak_35063	chr15	86879311	86879451	+	3.57362	NA	intron (NM_152336, intron 16 of 23)	intron (NM_152336, intron 16 of 23)	-19182	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14443	chr10	78407148	78407245	+	3.57362	NA	Intergenic	Intergenic	-240606	NR_120655	101929328	Hs.664552	NR_120655		KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8875	chr1	185563340	185563428	+	3.57362	NA	intron (NR_110793, intron 2 of 3)	intron (NR_110793, intron 2 of 3)	34236	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
19-PTNLD28-TUMOR_peak_92351	chr7	45440376	45440683	+	3.57362	NA	Intergenic	MER52A|LTR|ERV1	-173210	NM_001281768	107	Hs.192215	NM_021116	HPRD:00053	ADCY1	AC1|DFNB44	adenylate cyclase 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_27466	chr13	24214020	24214227	+	3.57362	NA	intron (NM_148957, intron 5 of 9)	intron (NM_148957, intron 5 of 9)	60624	NM_001204458	55504	Hs.149168	NM_018647	HPRD:05838	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	tumor necrosis factor receptor superfamily, member 19	protein-coding
19-PTNLD28-TUMOR_peak_38689	chr16	73606151	73606296	+	3.57362	NA	Intergenic	Intergenic	185519	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LOC100506172	-	uncharacterized LOC100506172	ncRNA
19-PTNLD28-TUMOR_peak_65544	chr22	39361063	39361162	+	3.57362	NA	intron (NM_001193289, intron 4 of 4)	intron (NM_001193289, intron 4 of 4)	7585	NM_001270406	200315	Hs.226307	NM_145699	HPRD:06168	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A	protein-coding
19-PTNLD28-TUMOR_peak_16171	chr10	127273686	127273774	+	3.57362	NA	Intergenic	LTR16D1|LTR|ERVL	10790	NR_023362	100169752	Hs.652647	NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_28219	chr13	49758291	49758391	+	3.57362	NA	intron (NR_103528, intron 14 of 25)	L2a|LINE|L2	-36133	NM_001507	2862	Hs.248126	NM_001507	HPRD:04197	MLNR	GPR38|MTLR1	motilin receptor	protein-coding
19-PTNLD28-TUMOR_peak_108462	chrX	56755888	56755977	+	3.57362	NA	non-coding (NR_015367, exon 1 of 3)	non-coding (NR_015367, exon 1 of 3)	214	NR_015367	550643	Hs.355559	NR_015367		LINC01420	-	long intergenic non-protein coding RNA 1420	ncRNA
19-PTNLD28-TUMOR_peak_75514	chr4	61857737	61857846	+	3.57362	NA	Intergenic	Intergenic	-505048	NM_015236	23284	Hs.28391	NM_015236	HPRD:10055	LPHN3	CIRL3|LEC3	latrophilin 3	protein-coding
19-PTNLD28-TUMOR_peak_63061	chr21	30477625	30477757	+	3.57362	NA	intron (NM_020152, intron 7 of 9)	intron (NM_020152, intron 7 of 9)	13116	NM_001286619	56911	Hs.222802	NM_020152	HPRD:10764	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
19-PTNLD28-TUMOR_peak_60021	chr20	18118016	18118204	+	3.56570	NA	promoter-TSS (NM_001164811)	promoter-TSS (NM_001164811)	-389	NM_001164811	100303755	Hs.488051	NM_001164811	ENSG00000149474	PET117	CSRP2BP	PET117 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_109321	chrX	119341156	119341288	+	3.56520	NA	Intergenic	HERVL18-int|LTR|ERVL	37900	NR_027131	158801	Hs.442518	NM_173522	HPRD:06560	NKAPP1	CXorf42	NFKB activating protein pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_102240	chr9	14532819	14532942	+	3.56520	NA	Intergenic	Intergenic	-133898	NM_001190738	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
19-PTNLD28-TUMOR_peak_13788	chr10	61932313	61932531	+	3.56520	NA	intron (NM_001204403, intron 21 of 43)	intron (NM_001204403, intron 21 of 43)	-31648	NM_001149	288	Hs.499725	NM_001149	HPRD:02715	ANK3	ANKYRIN-G|MRT37	ankyrin 3, node of Ranvier (ankyrin G)	protein-coding
19-PTNLD28-TUMOR_peak_48467	chr19	31611714	31611802	+	3.56520	NA	Intergenic	Intergenic	228432	NM_020856	57616	Hs.278436	NM_020856	HPRD:18351	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
19-PTNLD28-TUMOR_peak_42228	chr17	48408891	48409109	+	3.56520	NA	Intergenic	Intergenic	-14393	NR_110010	64132	Hs.463416	NM_022167	HPRD:16286	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
19-PTNLD28-TUMOR_peak_110076	chrY	1460875	1460963	+	3.56068	NA	5' UTR (NM_001636, exon 1 of 4).2	5' UTR (NM_001636, exon 1 of 4).2	120	NM_001636	293	Hs.350927	NM_001636		SLC25A6	2|3|AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	protein-coding
19-PTNLD28-TUMOR_peak_33835	chr15	60883878	60884184	+	3.56068	NA	intron (NM_134260, intron 1 of 11)	CpG	676	NM_134262	6095	Hs.560343	NM_002943	HPRD:02896	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR-related orphan receptor A	protein-coding
19-PTNLD28-TUMOR_peak_88135	chr6	56759986	56760259	+	3.56068	NA	intron (NM_001144769, intron 3 of 96)	SVA_E|Other|Other	-43408	NM_001144770	667	Hs.604915	NM_001723	HPRD:00222	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
19-PTNLD28-TUMOR_peak_53109	chr2	65103271	65103386	+	3.56068	NA	Intergenic	Intergenic	-12563	NR_110224	101927438	Hs.580313	NR_110224		LOC101927438	-	uncharacterized LOC101927438	ncRNA
19-PTNLD28-TUMOR_peak_3472	chr1	51800477	51800733	+	3.56068	NA	intron (NM_001144832, intron 1 of 17)	intron (NM_001144832, intron 1 of 17)	-4369	NM_001297662	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
19-PTNLD28-TUMOR_peak_50473	chr19	57182791	57182925	+	3.55930	NA	intron (NM_001005850, intron 1 of 1)	intron (NM_001005850, intron 1 of 1)	265	NM_001005850	90485	Hs.458438	NM_001005850	HPRD:12521	ZNF835	BC37295_3	zinc finger protein 835	protein-coding
19-PTNLD28-TUMOR_peak_55508	chr2	125165491	125165579	+	3.55441	NA	intron (NM_130773, intron 3 of 23)	L1PA2|LINE|L1	382671	NM_130773	129684	Hs.660653	NM_130773	HPRD:16732	CNTNAP5	caspr5	contactin associated protein-like 5	protein-coding
19-PTNLD28-TUMOR_peak_31873	chr14	95785821	95785922	+	3.55441	NA	intron (NM_024734, intron 1 of 12)	CpG	374	NM_024734	79789	Hs.301478	NM_024734	HPRD:13076	CLMN	-	calmin (calponin-like, transmembrane)	protein-coding
19-PTNLD28-TUMOR_peak_109999	chrX	153797113	153797238	+	3.54373	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2304	NR_027402	286967	Hs.391764	NM_173168		FAM223B	CXorf52|CXorf52B|LINC00204B|NCRNA00204B	family with sequence similarity 223, member B (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_99411	chr8	86788154	86788269	+	3.54142	NA	non-coding (NR_003594, exon 1 of 1).7	non-coding (NR_003594, exon 1 of 1).7	111	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_38222	chr16	66440518	66440606	+	3.54123	NA	Intergenic	CpG	-1865	NR_046242	100505865	Hs.314372	NR_046242		LINC00920	-	long intergenic non-protein coding RNA 920	ncRNA
19-PTNLD28-TUMOR_peak_32382	chr14	106130334	106130462	+	3.54040	NA	Intergenic	Intergenic	8746	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_54685	chr2	106361811	106362109	+	3.54040	NA	intron (NM_001004722, intron 1 of 3)	CpG	440	NM_001004722	8440	Hs.529244	NM_003581	HPRD:05378	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
19-PTNLD28-TUMOR_peak_1578	chr1	25160557	25160769	+	3.54040	NA	intron (NM_013943, intron 4 of 5)	SVA_E|Other|Other	85244	NR_106789	102465437		NR_106789		MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
19-PTNLD28-TUMOR_peak_48231	chr19	21751761	21751902	+	3.54040	NA	Intergenic	Intergenic	63394	NM_001001415	353088	Hs.572567	NM_001001415	HPRD:18342	ZNF429	-	zinc finger protein 429	protein-coding
19-PTNLD28-TUMOR_peak_77331	chr4	142250012	142250100	+	3.53365	NA	intron (NR_121625, intron 1 of 3)	intron (NR_121625, intron 1 of 3)	3715	NR_121625	100507639	Hs.535010	NR_121625	ENSG00000248810	LOC100507639	-	uncharacterized LOC100507639	ncRNA
19-PTNLD28-TUMOR_peak_86807	chr6	33181193	33181291	+	3.53365	NA	TTS (NM_002931)	TTS (NM_002931)	4956	NM_002931	6015	Hs.631989	NM_002931	HPRD:03624	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
19-PTNLD28-TUMOR_peak_42559	chr17	56160638	56160787	+	3.53365	NA	promoter-TSS (NM_080677)	promoter-TSS (NM_080677)	-68	NM_080677	140735	Hs.720595	NM_080677		DYNLL2	DNCL1B|Dlc2|RSPH22	dynein, light chain, LC8-type 2	protein-coding
19-PTNLD28-TUMOR_peak_93072	chr7	70159519	70159729	+	3.53358	NA	intron (NM_001127231, intron 5 of 17)	CpG	-437899	NM_022479	64409	Hs.488591	NM_022479	HPRD:15655	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
19-PTNLD28-TUMOR_peak_68285	chr3	51730101	51730218	+	3.53358	NA	intron (NM_001243725, intron 3 of 4)	intron (NM_001243725, intron 3 of 4)	-10922	NM_001130063	2912	Hs.121510	NM_000839	HPRD:04977	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate receptor, metabotropic 2	protein-coding
19-PTNLD28-TUMOR_peak_54814	chr2	110405479	110405567	+	3.53358	NA	Intergenic	Intergenic	33612	NM_023016	65124	Hs.355455	NM_023016	HPRD:08643	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
19-PTNLD28-TUMOR_peak_65630	chr22	40881955	40882050	+	3.53358	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-22558	NM_001282660	57591	Hs.654688	NM_020831	HPRD:10445	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
19-PTNLD28-TUMOR_peak_65871	chr22	44946907	44947039	+	3.53358	NA	Intergenic	LTR33C|LTR|ERVL	-18247	NR_028411	388910	Hs.332685	NM_001012986	HPRD:18389	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
19-PTNLD28-TUMOR_peak_41203	chr17	36313789	36313877	+	3.53358	NA	Intergenic	Intergenic	29814	NM_001291466	102723859	Hs.454716	NM_001291466		LOC102723859	-	TBC1 domain family member-like	protein-coding
19-PTNLD28-TUMOR_peak_84318	chr5	176906053	176906141	+	3.53173	NA	Intergenic	MIRb|SINE|MIR	-5403	NM_004395	1627	Hs.130316	NM_004395	HPRD:00545	DBN1	D0S117E	drebrin 1	protein-coding
19-PTNLD28-TUMOR_peak_99741	chr8	101726378	101726503	+	3.53173	NA	intron (NM_002568, intron 4 of 14)	intron (NM_002568, intron 4 of 14)	7875	NM_002568	26986	Hs.387804	NM_002568	HPRD:05247	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein, cytoplasmic 1	protein-coding
19-PTNLD28-TUMOR_peak_109895	chrX	152989307	152989448	+	3.53156	NA	promoter-TSS (NM_000033)	promoter-TSS (NM_000033)	179	NM_001139457	10134	Hs.522817	NM_005745	HPRD:02319	BCAP31	6C6-AG|BAP31|CDM|DDCH|DXS1357E	B-cell receptor-associated protein 31	protein-coding
19-PTNLD28-TUMOR_peak_100315	chr8	119879294	119879382	+	3.52700	NA	Intergenic	Intergenic	85045	NM_002546	4982	Hs.81791	NM_002546	HPRD:04032	TNFRSF11B	OCIF|OPG|TR1	tumor necrosis factor receptor superfamily, member 11b	protein-coding
19-PTNLD28-TUMOR_peak_41762	chr17	43084570	43084670	+	3.52700	NA	Intergenic	Intergenic	-38976	NM_006688	10882	Hs.134012	NM_006688	HPRD:12712	C1QL1	C1QRF|C1QTNF14|CRF	complement component 1, q subcomponent-like 1	protein-coding
19-PTNLD28-TUMOR_peak_9238	chr1	201500001	201500089	+	3.52700	NA	Intergenic	Intergenic	11013	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo
19-PTNLD28-TUMOR_peak_60687	chr20	33735484	33735572	+	3.52382	NA	promoter-TSS (NM_018217)	promoter-TSS (NM_018217)	-367	NM_001145025	55741	Hs.720177	NM_018217	HPRD:09841	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancer, mannosidase alpha-like 2	protein-coding
19-PTNLD28-TUMOR_peak_22	chr1	405935	406101	+	3.52056	NA	Intergenic	L3|LINE|CR1	38359	NM_001005277	81399	Hs.632360	NM_001005277	HPRD:14969	OR4F16	OR1-1|OR7-21	olfactory receptor, family 4, subfamily F, member 16	protein-coding
19-PTNLD28-TUMOR_peak_40895	chr17	28671377	28671508	+	3.52056	NA	Intergenic	Intergenic	-10377	NM_206832	388364	Hs.371005	NM_206832	HPRD:18274	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_84622	chr5	180832485	180832651	+	3.52056	NA	Intergenic	L3|LINE|CR1	38280	NM_001005221	729759	Hs.632360	NM_001005221	HPRD:14971	OR4F29	OR7-21	olfactory receptor, family 4, subfamily F, member 29	protein-coding
19-PTNLD28-TUMOR_peak_73013	chr3	187290314	187290415	+	3.52056	NA	Intergenic	Intergenic	97837	NM_001048	6750	Hs.12409	NM_001048	HPRD:08920	SST	SMST	somatostatin	protein-coding
19-PTNLD28-TUMOR_peak_33721	chr15	58430568	58430694	+	3.52056	NA	5' UTR (NM_020980, exon 1 of 6)	5' UTR (NM_020980, exon 1 of 6)	223	NM_020980	366	Hs.104624	NM_020980	HPRD:04223	AQP9	AQP-9|HsT17287|SSC1	aquaporin 9	protein-coding
19-PTNLD28-TUMOR_peak_91096	chr7	5598630	5598729	+	3.50620	NA	Intergenic	Intergenic	-28447	NM_001101	60	Hs.520640	NM_001101	HPRD:00032	ACTB	BRWS1|PS1TP5BP1	actin, beta	protein-coding
19-PTNLD28-TUMOR_peak_107327	chrUn_gl000247	2737	2841	+	3.50574	NA	NA	Intergenic	NA	NA								
19-PTNLD28-TUMOR_peak_34848	chr15	82737941	82738114	+	3.50198	NA	intron (NM_001164465, intron 8 of 9)	CpG	15039	NM_001291420	440295	Hs.498322	NM_198181	HPRD:11262	GOLGA6L9	GOLGA6L20	golgin A6 family-like 9	protein-coding
19-PTNLD28-TUMOR_peak_3585	chr1	54009679	54009770	+	3.50026	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	84652	NM_033067	63948	Hs.131654	NM_033067	HPRD:16828	DMRTB1	-	DMRT-like family B with proline-rich C-terminal, 1	protein-coding
19-PTNLD28-TUMOR_peak_58627	chr2	224809026	224809170	+	3.50026	NA	intron (NM_020830, intron 1 of 11)	CpG	954	NM_020830	57590	Hs.368359	NM_020830	HPRD:15663	WDFY1	FENS-1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_65930	chr22	45976089	45976243	+	3.50026	NA	intron (NM_006486, intron 16 of 16)	intron (NM_006486, intron 16 of 16)	77447	NM_001996	2192	Hs.24601	NM_001996	HPRD:00629	FBLN1	FBLN|FIBL1	fibulin 1	protein-coding
19-PTNLD28-TUMOR_peak_14058	chr10	71404359	71404529	+	3.49963	NA	Intergenic	Intergenic	14441	NM_145306	219738	Hs.522992	NM_145306	HPRD:12573	C10orf35	-	chromosome 10 open reading frame 35	protein-coding
19-PTNLD28-TUMOR_peak_65880	chr22	45022092	45022237	+	3.49963	NA	promoter-TSS (NR_044991)	promoter-TSS (NR_044991)	-865	NR_044991	414351	Hs.572878	NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
19-PTNLD28-TUMOR_peak_54823	chr2	110487372	110487523	+	3.49886	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-62888	NM_032260	84220	Hs.469630	NM_005054	HPRD:04128	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2-like and GRIP domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_68964	chr3	71420675	71420770	+	3.49886	NA	intron (NM_001012505, intron 3 of 6)	AluJr|SINE|Alu	-66811	NM_001244812	27086	Hs.59368	NM_032682	HPRD:18518	FOXP1	12CC4|QRF1|hFKH1B	forkhead box P1	protein-coding
19-PTNLD28-TUMOR_peak_106497	chr9	134553995	134554139	+	3.49886	NA	intron (NM_005312, intron 1 of 23)	intron (NM_005312, intron 1 of 23)	31162	NM_198679	2889	Hs.127897	NM_005312	HPRD:02627	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding
19-PTNLD28-TUMOR_peak_53258	chr2	68667832	68667920	+	3.49886	NA	Intergenic	Intergenic	26514	NM_001024680	554251	Hs.164117	NM_001024680		FBXO48	-	F-box protein 48	protein-coding
19-PTNLD28-TUMOR_peak_54493	chr2	101271314	101271402	+	3.49886	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	91940	NM_024065	79031	Hs.469459	NM_024065		PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin-like 3	protein-coding
19-PTNLD28-TUMOR_peak_26365	chr12	112563571	112563689	+	3.49139	NA	5' UTR (NM_001143906, exon 1 of 12)	5' UTR (NM_001143906, exon 1 of 12)	281	NM_006700	10906	Hs.5148	NM_006700	HPRD:10994	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_33824	chr15	60685020	60685137	+	3.49087	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	5107	NM_001002858	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
19-PTNLD28-TUMOR_peak_86272	chr6	27835092	27835196	+	3.48866	NA	exon (NM_005322, exon 1 of 1)	exon (NM_005322, exon 1 of 1)	215	NM_005322	3009	Hs.131956	NM_005322	HPRD:00821	HIST1H1B	H1|H1.5|H1B|H1F5|H1s-3	histone cluster 1, H1b	protein-coding
19-PTNLD28-TUMOR_peak_63984	chr21	46222429	46222557	+	3.48841	NA	promoter-TSS (NM_001202489)	promoter-TSS (NM_001202489)	337	NR_109928	101928689	Hs.116142	NR_109928		LINC01424	-	long intergenic non-protein coding RNA 1424	ncRNA
19-PTNLD28-TUMOR_peak_3360	chr1	48462972	48463060	+	3.48841	NA	promoter-TSS (NM_001194986)	promoter-TSS (NM_001194986)	-454	NM_001194986	388630	Hs.61504	NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
19-PTNLD28-TUMOR_peak_73383	chr3	194257967	194258096	+	3.48841	NA	Intergenic	L2c|LINE|L2	-46966	NR_047574	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_885	chr1	13217217	13217333	+	3.48801	NA	Intergenic	Intergenic	22757	NR_111945	645354		NR_111945		LOC645354	-	PRAME family member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_70115	chr3	121613188	121613329	+	3.48801	NA	promoter-TSS (NM_001145998)	promoter-TSS (NM_001145998)	87	NM_021082	6565	Hs.518089	NM_021082	HPRD:09088	SLC15A2	PEPT2	solute carrier family 15 (oligopeptide transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_39077	chr16	84325742	84326031	+	3.48801	NA	Intergenic	Intergenic	-2426	NM_021197	58189	Hs.36688	NM_021197	HPRD:05614	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
19-PTNLD28-TUMOR_peak_51104	chr2	10902986	10903100	+	3.48801	NA	intron (NM_001039362, intron 4 of 13)	intron (NM_001039362, intron 4 of 13)	41268	NM_144583	245973	Hs.580464	NM_144583	HPRD:16523	ATP6V1C2	ATP6C2|VMA5	ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2	protein-coding
19-PTNLD28-TUMOR_peak_5375	chr1	109913957	109914070	+	3.48060	NA	intron (NM_002959, intron 1 of 19)	intron (NM_002959, intron 1 of 19)	21966	NM_001205228	6272	Hs.485195	NM_002959	HPRD:03910	SORT1	Gp95|LDLCQ6|NT3	sortilin 1	protein-coding
19-PTNLD28-TUMOR_peak_63228	chr21	34602619	34602721	+	3.48060	NA	intron (NM_207584, intron 1 of 8)	CpG	470	NM_207584	3455	Hs.708195	NM_000874	HPRD:03850	IFNAR2	IFN-R|IFN-alpha-REC|IFNABR|IFNARB	interferon (alpha, beta and omega) receptor 2	protein-coding
19-PTNLD28-TUMOR_peak_54179	chr2	95527520	95527650	+	3.48060	NA	Intergenic	Intergenic	-4765	NR_003366	729171	Hs.456852	NR_003366		ANKRD20A8P	ANKRD20B	ankyrin repeat domain 20 family, member A8, pseudogene	pseudo
19-PTNLD28-TUMOR_peak_7512	chr1	159181005	159181187	+	3.48060	NA	Intergenic	Intergenic	6047	NM_001122951	2532	Hs.153381	NM_002036	HPRD:00192	ACKR1	CCBP1|CD234|DARC|Dfy|FY|GPD|GpFy|WBCQ1	atypical chemokine receptor 1 (Duffy blood group)	protein-coding
19-PTNLD28-TUMOR_peak_12213	chr10	17271415	17271589	+	3.47754	NA	exon (NM_003380, exon 2 of 10)	exon (NM_003380, exon 2 of 10)	482	NR_108061	100507347	Hs.740502	NR_108060		VIM-AS1	-	VIM antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_45235	chr18	33877163	33877303	+	3.47258	NA	promoter-TSS (NM_001281740)	promoter-TSS (NM_001281740)	-426	NM_025135	80206	Hs.630884	NM_025135	HPRD:16894	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
19-PTNLD28-TUMOR_peak_31127	chr14	71137884	71137973	+	3.47258	NA	3' UTR (NM_015351, exon 3 of 3)	3' UTR (NM_015351, exon 3 of 3)	-27487	NR_125769	103695436	Hs.572296	NR_125769		LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
19-PTNLD28-TUMOR_peak_12827	chr10	32435074	32435207	+	3.47135	NA	Intergenic	Intergenic	-89769	NM_004521	3799	Hs.327736	NM_004521	HPRD:07214	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
19-PTNLD28-TUMOR_peak_67158	chr3	23780516	23780651	+	3.47077	NA	Intergenic	Intergenic	-66801	NM_182666	7324	Hs.164853	NM_003341	HPRD:04225	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
19-PTNLD28-TUMOR_peak_72754	chr3	183977812	183978014	+	3.47067	NA	3' UTR (NM_033259, exon 2 of 2)	3' UTR (NM_033259, exon 2 of 2)	1338	NM_033259	94032	Hs.585003	NM_033259	HPRD:16377	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding
19-PTNLD28-TUMOR_peak_41798	chr17	43319065	43319243	+	3.47067	NA	intron (NM_005892, intron 14 of 26)	CpG-10718	-6138	NR_110325	100133991	Hs.668927	NR_024434	ENSG00000267278	MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_5627	chr1	113554947	113555035	+	3.46581	NA	non-coding (NR_103777, exon 3 of 3)	non-coding (NR_103777, exon 3 of 3)	55954	NR_103743	100506392	Hs.418285	NR_103743	ENSG00000226419	SLC16A1-AS1	-	SLC16A1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_11580	chr10	138819	139014	+	3.46581	NA	Intergenic	Intergenic	-41489	NM_006624	10771	Hs.292265	NM_006624	HPRD:09830	ZMYND11	BRAM1|BS69	zinc finger, MYND-type containing 11	protein-coding
19-PTNLD28-TUMOR_peak_109269	chrX	117641906	117641994	+	3.46581	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	12078	NM_144658	139818	Hs.368203	NM_144658	HPRD:06492	DOCK11	ACG|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
19-PTNLD28-TUMOR_peak_81013	chr5	82759354	82759498	+	3.46581	NA	Intergenic	L1PA2|LINE|L1	-8067	NM_004385	1462	Hs.643801	NM_004385	HPRD:00340	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
19-PTNLD28-TUMOR_peak_79405	chr5	33603549	33603639	+	3.46581	NA	intron (NM_030955, intron 16 of 23)	intron (NM_030955, intron 16 of 23)	162712	NR_047677	6897	Hs.481860	NM_152295	HPRD:01762	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding
19-PTNLD28-TUMOR_peak_76753	chr4	119479726	119479908	+	3.46581	NA	Intergenic	Intergenic	-33082	NR_109983	729218	Hs.448518	NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
19-PTNLD28-TUMOR_peak_29329	chr14	21019138	21019329	+	3.46581	NA	Intergenic	Intergenic	9857	NM_001110359	390443	Hs.533972	NM_001001673	HPRD:17983	RNASE9	HEL128|RAK1|h461	ribonuclease, RNase A family, 9 (non-active)	protein-coding
19-PTNLD28-TUMOR_peak_108633	chrX	68370959	68371069	+	3.46581	NA	Intergenic	L2c|LINE|L2	14351	NM_145119	64219	Hs.522679	NM_022368	HPRD:02335	PJA1	PRAJA1|RNF70	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding
19-PTNLD28-TUMOR_peak_43278	chr17	71706354	71706456	+	3.46581	NA	Intergenic	Intergenic	-27588	NM_001278587	100134391	Hs.694655	NM_001278587		LOC100134391	-	uncharacterized LOC100134391	protein-coding
19-PTNLD28-TUMOR_peak_68651	chr3	59650264	59650433	+	3.46581	NA	Intergenic	Intergenic	-614633	NM_198463	200844	Hs.368434	NM_198463	HPRD:13458	C3orf67	-	chromosome 3 open reading frame 67	protein-coding
19-PTNLD28-TUMOR_peak_93675	chr7	81128861	81128973	+	3.46581	NA	Intergenic	L2c|LINE|L2	270535	NM_001010933	3082	Hs.396530	NM_000601	HPRD:00799	HGF	DFNB39|F-TCF|HGFB|HPTA|SF	hepatocyte growth factor (hepapoietin A; scatter factor)	protein-coding
19-PTNLD28-TUMOR_peak_14914	chr10	93971200	93971288	+	3.46581	NA	intron (NM_014912, intron 2 of 9)	intron (NM_014912, intron 2 of 9)	31792	NM_001178137	22849	Hs.131683	NM_014912	HPRD:16745	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_3963	chr1	62208837	62208933	+	3.46490	NA	intron (NM_176877, intron 1 of 42)	intron (NM_176877, intron 1 of 42)	736	NM_176877	10207	Hs.478125	NM_005799	HPRD:04434	INADL	Cipp|InaD-like|PATJ|hINADL	InaD-like (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_33440	chr15	45694761	45694852	+	3.46114	NA	non-coding (NR_027635, exon 1 of 8)	non-coding (NR_027635, exon 1 of 8)	287	NR_027635	79029	Hs.369657	NM_024063	HPRD:11596	SPATA5L1	-	spermatogenesis associated 5-like 1	protein-coding
19-PTNLD28-TUMOR_peak_43033	chr17	65021461	65021652	+	3.46114	NA	intron (NM_014405, intron 3 of 3)	intron (NM_014405, intron 3 of 3)	-19096	NM_000727	786	Hs.147989	NM_000727	HPRD:00249	CACNG1	CACNLG	calcium channel, voltage-dependent, gamma subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_43706	chr17	76128429	76128521	+	3.45150	NA	promoter-TSS (NM_007267)	promoter-TSS (NM_007267)	13	NM_007267	11322	Hs.632227	NM_007267	HPRD:08386	TMC6	EV1|EVER1|EVIN1|LAK-4P	transmembrane channel-like 6	protein-coding
19-PTNLD28-TUMOR_peak_44720	chr18	13641864	13642050	+	3.44594	NA	5' UTR (NM_001276251, exon 1 of 3)	5' UTR (NM_001276251, exon 1 of 3)	200	NM_001276251	753	Hs.731853	NM_004338	HPRD:07358	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_41166	chr17	35305899	35305998	+	3.44594	NA	promoter-TSS (NM_012138)	promoter-TSS (NM_012138)	-227	NM_012138	26574	Hs.195740	NM_012138	HPRD:12236	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
19-PTNLD28-TUMOR_peak_91362	chr7	16461106	16461194	+	3.44564	NA	promoter-TSS (NM_001101426)	promoter-TSS (NM_001101426)	-203	NM_001101417	729920	Hs.636502	NM_001101417		ISPD	MDDGA7|Nip|hCG_1745121	isoprenoid synthase domain containing	protein-coding
19-PTNLD28-TUMOR_peak_91071	chr7	5451343	5451563	+	3.44249	NA	intron (NM_001080495, intron 2 of 29)	HAL1|LINE|L1	11724	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
19-PTNLD28-TUMOR_peak_100949	chr8	131107070	131107158	+	3.44135	NA	intron (NM_018482, intron 24 of 29)	intron (NM_018482, intron 24 of 29)	-10100	NR_045385	100507117	Hs.106015	NR_045385		ASAP1-IT2	-	ASAP1 intronic transcript 2 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_84522	chr5	179606654	179606752	+	3.44135	NA	intron (NM_175062, intron 1 of 13)	intron (NM_175062, intron 1 of 13)	29427	NM_175062	255426	Hs.190559	NM_175062	HPRD:15212	RASGEF1C	-	RasGEF domain family, member 1C	protein-coding
19-PTNLD28-TUMOR_peak_22939	chr12	8479863	8479951	+	3.44135	NA	Intergenic	AluJr|SINE|Alu	63441	NR_024420	389634	Hs.434403	NM_001012988	HPRD:18395	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
19-PTNLD28-TUMOR_peak_96827	chr8	76973	77128	+	3.44135	NA	Intergenic	L3|LINE|CR1	39974	NM_001005504	441308	Hs.690459	NM_001005504		OR4F21	OR4F21P	olfactory receptor, family 4, subfamily F, member 21	protein-coding
19-PTNLD28-TUMOR_peak_2685	chr1	40265009	40265097	+	3.43948	NA	Intergenic	Intergenic	-10520	NM_001720	656	Hs.734367	NM_001720		BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
19-PTNLD28-TUMOR_peak_47078	chr19	8643666	8643792	+	3.43608	NA	Intergenic	Intergenic	-1398	NM_012335	4542	Hs.465818	NM_012335	HPRD:03282	MYO1F	-	myosin IF	protein-coding
19-PTNLD28-TUMOR_peak_105862	chr9	124049033	124049124	+	3.43464	NA	intron (NM_001258030, intron 1 of 16)	intron (NM_001258030, intron 1 of 16)	220	NM_001258030	2934	Hs.522373	NM_000177	HPRD:00674	GSN	ADF|AGEL	gelsolin	protein-coding
19-PTNLD28-TUMOR_peak_48249	chr19	22440282	22440525	+	3.43348	NA	Intergenic	BSR/Beta|Satellite|Satellite	-28849	NM_001242680	100287226	Hs.531629	NM_001242680	ENSG00000196350	ZNF729	-	zinc finger protein 729	protein-coding
19-PTNLD28-TUMOR_peak_63546	chr21	40332826	40332955	+	3.43348	NA	Intergenic	Intergenic	16810	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LOC101928435	-	uncharacterized LOC101928435	ncRNA
19-PTNLD28-TUMOR_peak_105605	chr9	117333774	117333923	+	3.43348	NA	Intergenic	AluJb|SINE|Alu	-16146	NM_004888	9550	Hs.388654	NM_004888		ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1	protein-coding
19-PTNLD28-TUMOR_peak_78787	chr5	7990541	7990629	+	3.43348	NA	Intergenic	Intergenic	121368	NM_002454	4552	Hs.481551	NM_002454	HPRD:03979	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
19-PTNLD28-TUMOR_peak_87632	chr6	43895562	43895708	+	3.43171	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	36870	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	-	long intergenic non-protein coding RNA 1512	ncRNA
19-PTNLD28-TUMOR_peak_33039	chr15	35280910	35281029	+	3.43104	NA	promoter-TSS (NM_014106)	promoter-TSS (NM_014106)	-472	NM_014106	54989	Hs.744990	NM_014106	HPRD:16918	ZNF770	PRO1914	zinc finger protein 770	protein-coding
19-PTNLD28-TUMOR_peak_1023	chr1	16159935	16160023	+	3.42542	NA	TTS (NR_024279)	TTS (NR_024279)	-14380	NM_015001	23013	Hs.744843	NM_015001	HPRD:10230	SPEN	HIAA0929|MINT|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
19-PTNLD28-TUMOR_peak_72958	chr3	186543373	186543495	+	3.42380	NA	promoter-TSS (NR_125409)	promoter-TSS (NR_125409)	-124	NR_125409	102724699	Hs.518476	NR_125409		LOC102724699	-	uncharacterized LOC102724699	ncRNA
19-PTNLD28-TUMOR_peak_102781	chr9	34457747	34457898	+	3.42380	NA	promoter-TSS (NM_012144)	promoter-TSS (NM_012144)	746	NM_147202	203259	Hs.493771	NM_147202	HPRD:12950	FAM219A	C9orf25|bA573M23.5	family with sequence similarity 219, member A	protein-coding
19-PTNLD28-TUMOR_peak_89757	chr6	142891708	142891879	+	3.42168	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	67180	NR_027311	153910	Hs.350819	NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
19-PTNLD28-TUMOR_peak_48556	chr19	33783995	33784182	+	3.42168	NA	Intergenic	Intergenic	9382	NM_001287424	1050	Hs.76171	NM_004364	HPRD:00296	CEBPA	C/EBP-alpha|CEBP	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding
19-PTNLD28-TUMOR_peak_31011	chr14	69511985	69512073	+	3.42168	NA	Intergenic	Intergenic	65630	NR_073422	161159	Hs.603341	NR_073422	ENSG00000259062	ACTN1-AS1	C14orf84	ACTN1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_36388	chr16	13483645	13483770	+	3.41980	NA	Intergenic	Intergenic	488230	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
19-PTNLD28-TUMOR_peak_65389	chr22	37571912	37572069	+	3.41980	NA	Intergenic	Intergenic	12340	NM_182486	114904	Hs.22011	NM_031910	HPRD:12718	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and tumor necrosis factor related protein 6	protein-coding
19-PTNLD28-TUMOR_peak_51666	chr2	26624950	26625092	+	3.41980	NA	intron (NM_145038, intron 1 of 16)	CpG	237	NM_145038	92749	Hs.393714	NM_145038	HPRD:11312	DRC1	C2orf39|CCDC164|CILD21	dynein regulatory complex subunit 1	protein-coding
19-PTNLD28-TUMOR_peak_41248	chr17	36763661	36763845	+	3.41980	NA	Intergenic	Intergenic	-1570	NM_025248	80725	Hs.448872	NM_025248	HPRD:11589	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_4261	chr1	68445371	68445459	+	3.41914	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	71045	NM_004675	9077	Hs.194695	NM_004675	HPRD:05547	DIRAS3	ARHI|NOEY2	DIRAS family, GTP-binding RAS-like 3	protein-coding
19-PTNLD28-TUMOR_peak_53855	chr2	86141130	86141218	+	3.41914	NA	Intergenic	LTR88b|LTR|Gypsy?	24771	NR_110569	101928113	Hs.625888	NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
19-PTNLD28-TUMOR_peak_103207	chr9	42252204	42252293	+	3.41772	NA	Intergenic	SST1|Satellite|centr	-116055	NM_001012421	441430	Hs.632663	NM_001012421	HPRD:18652	ANKRD20A2	-	ankyrin repeat domain 20 family, member A2	protein-coding
19-PTNLD28-TUMOR_peak_54307	chr2	97202908	97203135	+	3.41261	NA	intron (NM_212481, intron 1 of 6)	CpG	557	NM_212481	10865	Hs.920	NM_006673	HPRD:12481	ARID5A	MRF-1|MRF1|RP11-363D14	AT rich interactive domain 5A (MRF1-like)	protein-coding
19-PTNLD28-TUMOR_peak_42829	chr17	61700511	61700620	+	3.40824	NA	intron (NM_203351, intron 1 of 16)	CpG	764	NM_203351	4215	Hs.29282	NM_002401	HPRD:03965	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
19-PTNLD28-TUMOR_peak_9158	chr1	200865570	200865658	+	3.40579	NA	intron (NM_001142569, intron 1 of 9)	intron (NM_001142569, intron 1 of 9)	1665	NM_001142569	55765	Hs.518997	NM_018265	HPRD:07712	C1orf106	-	chromosome 1 open reading frame 106	protein-coding
19-PTNLD28-TUMOR_peak_770	chr1	11708999	11709171	+	3.40302	NA	intron (NM_012168, intron 5 of 5)	CpG	-5347	NM_183412	93611	Hs.556006	NM_033182	HPRD:16445	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
19-PTNLD28-TUMOR_peak_60194	chr20	23129107	23129224	+	3.40215	NA	Intergenic	L3|LINE|CR1	-15892	NR_034149	200261	Hs.352228	NM_182535	HPRD:14124	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
19-PTNLD28-TUMOR_peak_51732	chr2	27474558	27474703	+	3.40147	NA	Intergenic	MIR3|SINE|MIR	11330	NM_003459	7781	Hs.467981	NM_003459	HPRD:11924	SLC30A3	ZNT3	solute carrier family 30 (zinc transporter), member 3	protein-coding
19-PTNLD28-TUMOR_peak_14270	chr10	73847436	73847524	+	3.40147	NA	intron (NM_001134434, intron 2 of 2)	CpG	1051	NM_001244950	9806	Hs.523009	NM_014767	HPRD:12146	SPOCK2	testican-2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	protein-coding
19-PTNLD28-TUMOR_peak_77717	chr4	154945146	154945263	+	3.40144	NA	Intergenic	LTR1|LTR|ERV1	-234976	NM_003013	6423	Hs.481022	NM_003013	HPRD:16041	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled-related protein 2	protein-coding
19-PTNLD28-TUMOR_peak_70134	chr3	121902851	121903035	+	3.40144	NA	promoter-TSS (NM_001178065)	promoter-TSS (NM_001178065)	-238	NM_001178065	846	Hs.435615	NM_000388	HPRD:03122	CASR	CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1	calcium-sensing receptor	protein-coding
19-PTNLD28-TUMOR_peak_53519	chr2	74097328	74097489	+	3.40144	NA	Intergenic	Intergenic	-22685	NM_001615	72	Hs.516105	NM_001615	HPRD:00016	ACTG2	ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM	actin, gamma 2, smooth muscle, enteric	protein-coding
19-PTNLD28-TUMOR_peak_10887	chr1	232699051	232699167	+	3.40144	NA	Intergenic	Intergenic	-47866	NM_020808	57568	Hs.745009	NM_020808	HPRD:15346	SIPA1L2	SPAL2	signal-induced proliferation-associated 1 like 2	protein-coding
19-PTNLD28-TUMOR_peak_20827	chr11	101454526	101454705	+	3.40144	NA	promoter-TSS (NM_004621)	promoter-TSS (NM_004621)	44	NM_004621	7225	Hs.159003	NM_004621	HPRD:04710	TRPC6	FSGS2|TRP6	transient receptor potential cation channel, subfamily C, member 6	protein-coding
19-PTNLD28-TUMOR_peak_70274	chr3	123850473	123850599	+	3.40144	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	-1240	NR_049798	100847021		NR_049798		MIR5002	-	microRNA 5002	ncRNA
19-PTNLD28-TUMOR_peak_37572	chr16	46391350	46391453	+	3.40024	NA	Intergenic	HSATII|Satellite|Satellite	211608	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_24987	chr12	64846213	64846306	+	3.39984	NA	intron (NM_013254, intron 1 of 20)	CpG	419	NM_013254	29110	Hs.505874	NM_013254	HPRD:05322	TBK1	NAK|T2K	TANK-binding kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_50855	chr2	3638514	3638765	+	3.39806	NA	Intergenic	SVA_E|Other|Other	-3783	NM_001255982	78989	Hs.32603	NM_024027	HPRD:10847	COLEC11	3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin sub-family member 11	protein-coding
19-PTNLD28-TUMOR_peak_78682	chr5	1548390	1548497	+	3.39806	NA	Intergenic	Intergenic	-24367	NM_024830	79888	Hs.368853	NM_024830	HPRD:08572	LPCAT1	AYTL2|PFAAP3|lpcat	lysophosphatidylcholine acyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_77766	chr4	156588166	156588290	+	3.39366	NA	promoter-TSS (NM_001130685)	promoter-TSS (NM_001130685)	79	NM_001130683	2982	Hs.24258	NM_000856	HPRD:00768	GUCY1A3	GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1|MYMY6	guanylate cyclase 1, soluble, alpha 3	protein-coding
19-PTNLD28-TUMOR_peak_74441	chr4	9598737	9598859	+	3.39366	NA	Intergenic	L2b|LINE|L2	-40861	NR_031688	100302277		NR_031688	miRBase:MI0006422	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2	microRNA 548i-2	ncRNA
19-PTNLD28-TUMOR_peak_58979	chr2	235860399	235860547	+	3.39366	NA	promoter-TSS (NM_014521)	promoter-TSS (NM_014521)	-155	NM_014521	23677	Hs.516777	NM_014521	HPRD:09285	SH3BP4	BOG25|TTP	SH3-domain binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_95316	chr7	130627021	130627142	+	3.39338	NA	intron (NR_109855, intron 4 of 4)	intron (NR_109855, intron 4 of 4)	28858	NR_109780	100506860	Hs.635013	NR_109780		LOC100506860	-	uncharacterized LOC100506860	ncRNA
19-PTNLD28-TUMOR_peak_50384	chr19	55987563	55987672	+	3.39278	NA	promoter-TSS (NM_033113)	promoter-TSS (NM_033113)	-82	NM_033113	89887	Hs.525209	NM_033113	HPRD:18317	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
19-PTNLD28-TUMOR_peak_31260	chr14	74318370	74318458	+	3.38463	NA	promoter-TSS (NM_001146155)	promoter-TSS (NM_001146155)	-120	NM_001146154	145482	Hs.632344	NM_152444	HPRD:09782	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
19-PTNLD28-TUMOR_peak_101019	chr8	132051761	132051849	+	3.38463	NA	exon (NM_001115, exon 1 of 18)	exon (NM_001115, exon 1 of 18)	1030	NM_001115	114	Hs.591859	NM_001115	HPRD:00051	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_84463	chr5	178772225	178772313	+	3.38463	NA	exon (NM_014244, exon 1 of 22)	exon (NM_014244, exon 1 of 22)	162	NM_021599	9509	Hs.23871	NM_014244	HPRD:05173	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif, 2	protein-coding
19-PTNLD28-TUMOR_peak_16139	chr10	126490929	126491093	+	3.38322	NA	intron (NM_032182, intron 1 of 8)	intron (NM_032182, intron 1 of 8)	657	NM_032182	23172	Hs.280695	NM_032182	HPRD:13783	FAM175B	ABRO1|KIAA0157	family with sequence similarity 175, member B	protein-coding
19-PTNLD28-TUMOR_peak_95936	chr7	142034763	142034878	+	3.37757	NA	Intergenic	Intergenic	-62752	NR_036483	207147	Hs.604069	NR_036483		TRY2P	-	trypsinogen-like pseudogene	pseudo
19-PTNLD28-TUMOR_peak_5880	chr1	117817825	117817978	+	3.37563	NA	Intergenic	Intergenic	-64319	NR_045604	79679	Hs.546434	NM_024626	HPRD:06429	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding
19-PTNLD28-TUMOR_peak_777	chr1	11741457	11741631	+	3.37563	NA	promoter-TSS (NM_006341)	promoter-TSS (NM_006341)	-273	NM_006341	10459	Hs.19400	NM_006341	HPRD:07246	MAD2L2	MAD2B|POLZ2|REV7	MAD2 mitotic arrest deficient-like 2 (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_20320	chr11	79684943	79685031	+	3.37563	NA	Intergenic	Intergenic	-533292	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
19-PTNLD28-TUMOR_peak_24939	chr12	63256475	63256563	+	3.36968	NA	intron (NM_020700, intron 1 of 9)	intron (NM_020700, intron 1 of 9)	72146	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent, 1H	protein-coding
19-PTNLD28-TUMOR_peak_100527	chr8	124498932	124499020	+	3.36968	NA	Intergenic	Intergenic	45407	NM_148177	114907	Hs.403933	NM_058229	HPRD:05966	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
19-PTNLD28-TUMOR_peak_105195	chr9	110138427	110138651	+	3.36968	NA	Intergenic	L2|LINE|L2	90327	NR_121581	101928720	Hs.125496	NR_121581		LINC01509	-	long intergenic non-protein coding RNA 1509	ncRNA
19-PTNLD28-TUMOR_peak_42338	chr17	50236185	50236276	+	3.36968	NA	promoter-TSS (NM_020178)	promoter-TSS (NM_020178)	-98	NM_020178	56934	Hs.463466	NM_020178	HPRD:05224	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase X	protein-coding
19-PTNLD28-TUMOR_peak_1390	chr1	22566044	22566154	+	3.36968	NA	Intergenic	Intergenic	-96580	NM_030761	54361	Hs.25766	NM_030761	HPRD:04601	WNT4	SERKAL|WNT-4	wingless-type MMTV integration site family, member 4	protein-coding
19-PTNLD28-TUMOR_peak_74461	chr4	9849727	9849912	+	3.36968	NA	intron (NM_001001290, intron 11 of 12)	intron (NM_001001290, intron 11 of 12)	66561	NM_000798	1816	Hs.380681	NM_000798	HPRD:00542	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
19-PTNLD28-TUMOR_peak_11991	chr10	11207084	11207205	+	3.36771	NA	5' UTR (NM_001083591, exon 1 of 15)	5' UTR (NM_001083591, exon 1 of 15)	151	NM_001083591	10659	Hs.309288	NM_006561	HPRD:03964	CELF2	BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding
19-PTNLD28-TUMOR_peak_16594	chr11	1665380	1665477	+	3.36771	NA	Intergenic	LTR13|LTR|ERVK	14395	NM_001001480	439915	Hs.653467	NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
19-PTNLD28-TUMOR_peak_10179	chr1	221509679	221509767	+	3.36771	NA	promoter-TSS (NR_024236)	promoter-TSS (NR_024236)	-85	NR_024236	400804	Hs.722626	NR_024236	HPRD:17386	C1orf140	-	uncharacterized LOC400804	ncRNA
19-PTNLD28-TUMOR_peak_35665	chr16	824178	824268	+	3.36350	NA	Intergenic	Intergenic	4040	NR_030384	724032		NR_030384	miRBase:MI0003670	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
19-PTNLD28-TUMOR_peak_100412	chr8	121822482	121822600	+	3.35286	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	1768	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_95958	chr7	142247092	142247510	+	3.35065	NA	Intergenic	Intergenic	-126830	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding
19-PTNLD28-TUMOR_peak_83224	chr5	150080852	150080940	+	3.35065	NA	promoter-TSS (NM_018047)	promoter-TSS (NM_018047)	-227	NM_018047	55696	Hs.713564	NM_018047	HPRD:10186	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
19-PTNLD28-TUMOR_peak_42994	chr17	64188204	64188378	+	3.34172	NA	promoter-TSS (NM_001199165)	promoter-TSS (NM_001199165)	-79	NM_001199165	201134	Hs.408676	NM_145036	HPRD:11336	CEP112	CCDC46|MACOCO	centrosomal protein 112kDa	protein-coding
19-PTNLD28-TUMOR_peak_20151	chr11	76313606	76313730	+	3.34172	NA	Intergenic	Intergenic	67376	NM_005512	2615	Hs.151641	NM_005512	HPRD:00667	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
19-PTNLD28-TUMOR_peak_9903	chr1	210406910	210407049	+	3.34172	NA	intron (NM_019605, intron 1 of 3)	CpG	487	NR_024337	574036	Hs.446946	NR_024337	ENSG00000203706	SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_8855	chr1	185267216	185267331	+	3.34172	NA	exon (NM_006469, exon 15 of 15)	exon (NM_006469, exon 15 of 15)	19188	NM_006469	10625	Hs.497183	NM_006469	HPRD:10004	IVNS1ABP	FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
19-PTNLD28-TUMOR_peak_108838	chrX	80376706	80376794	+	3.34172	NA	intron (NM_030763, intron 2 of 6)	intron (NM_030763, intron 2 of 6)	-80553	NM_003022	6451	Hs.108029	NM_003022	HPRD:02178	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate-rich protein like	protein-coding
19-PTNLD28-TUMOR_peak_100656	chr8	126245129	126245370	+	3.33853	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	141166	NM_173685	286053	Hs.388297	NM_173685	HPRD:08131	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	non-SMC element 2, MMS21 homolog (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_99279	chr8	79716654	79716799	+	3.33853	NA	intron (NM_001199886, intron 1 of 4)	CpG	1032	NM_000880	3574	Hs.591873	NM_000880	HPRD:00892	IL7	IL-7	interleukin 7	protein-coding
19-PTNLD28-TUMOR_peak_77663	chr4	153913236	153913441	+	3.33853	NA	Intergenic	Intergenic	49203	NM_033393	85462	Hs.132629	NM_033393	HPRD:13888	FHDC1	-	FH2 domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_64737	chr22	24457120	24457208	+	3.33853	NA	intron (NM_012295, intron 12 of 36)	AluJb|SINE|Alu	49344	NM_001199281	23523	Hs.517478	NM_012295	HPRD:10369	CABIN1	CAIN|PPP3IN	calcineurin binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_16771	chr11	3808122	3808230	+	3.33853	NA	intron (NM_139132, intron 1 of 31)	intron (NM_139132, intron 1 of 31)	-10778	NM_001256235	27315	Hs.133968	NM_014489	HPRD:17016	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
19-PTNLD28-TUMOR_peak_27595	chr13	28575114	28575301	+	3.33853	NA	Intergenic	MER52A|LTR|ERV1	-12433	NM_001105577	646625	Hs.705356	NM_001105577		URAD	PRHOXNB	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	protein-coding
19-PTNLD28-TUMOR_peak_80819	chr5	76476255	76476343	+	3.33853	NA	Intergenic	CpG	-30407	NM_001029851	8622	Hs.584830	NM_003719	HPRD:04546	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
19-PTNLD28-TUMOR_peak_80305	chr5	65629166	65629269	+	3.33401	NA	Intergenic	Intergenic	178215	NR_105001	101928769	Hs.97903	NR_105001	ENSG00000250313	LOC101928769	-	uncharacterized LOC101928769	ncRNA
19-PTNLD28-TUMOR_peak_100720	chr8	126709660	126709748	+	3.33285	NA	Intergenic	MIR|SINE|MIR	253737	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
19-PTNLD28-TUMOR_peak_1612	chr1	25899374	25899462	+	3.33229	NA	Intergenic	MIR|SINE|MIR	29342	NM_015627	26119	Hs.590911	NM_015627	HPRD:05765	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding
19-PTNLD28-TUMOR_peak_60798	chr20	35120499	35120587	+	3.33229	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	30357	NM_183006	22839	Hs.249600	NM_014902	HPRD:16826	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	discs, large (Drosophila) homolog-associated protein 4	protein-coding
19-PTNLD28-TUMOR_peak_8684	chr1	182365995	182366094	+	3.32612	NA	Intergenic	Intergenic	3707	NM_172000	127670	Hs.156977	NM_172000	HPRD:13642	TEDDM1	EDDM9|Epdd1|HE9|TMEM45C	transmembrane epididymal protein 1	protein-coding
19-PTNLD28-TUMOR_peak_15250	chr10	102757883	102758092	+	3.32569	NA	intron (NM_032429, intron 1 of 4)	CpG	1123	NM_032429	84445	Hs.523221	NM_032429	HPRD:14341	LZTS2	LAPSER1	leucine zipper, putative tumor suppressor 2	protein-coding
19-PTNLD28-TUMOR_peak_57654	chr2	198299361	198299549	+	3.31691	NA	intron (NM_001005526, intron 1 of 4)	CpG	316	NM_001005526	23451	Hs.632554	NM_012433	HPRD:09281	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b, subunit 1, 155kDa	protein-coding
19-PTNLD28-TUMOR_peak_5595	chr1	113161573	113161885	+	3.31691	NA	promoter-TSS (NM_006135)	promoter-TSS (NM_006135)	311	NM_138727	54879	Hs.201921	NM_017744	HPRD:18112	ST7L	FAM4B|ST7R|STLR	suppression of tumorigenicity 7 like	protein-coding
19-PTNLD28-TUMOR_peak_90848	chr7	1604277	1604399	+	3.31068	NA	Intergenic	Intergenic	5291	NM_032302	84262	Hs.446311	NM_032302	HPRD:14404	PSMG3	C7orf48|PAC3	proteasome (prosome, macropain) assembly chaperone 3	protein-coding
19-PTNLD28-TUMOR_peak_22788	chr12	6717317	6717405	+	3.31043	NA	promoter-TSS (NM_001273)	promoter-TSS (NM_001273)	-762	NM_001273	1108	Hs.162233	NM_001273	HPRD:04472	CHD4	CHD-4|Mi-2b|Mi2-BETA	chromodomain helicase DNA binding protein 4	protein-coding
19-PTNLD28-TUMOR_peak_30728	chr14	64218465	64218594	+	3.31031	NA	Intergenic	SVA_C|Other|Other	-23773	NM_030791	81537	Hs.24678	NM_030791	HPRD:10226	SGPP1	SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
19-PTNLD28-TUMOR_peak_52680	chr2	47899357	47899509	+	3.30760	NA	Intergenic	AluYa5|SINE|Alu	-101963	NM_022055	56660	Hs.591586	NM_022055		KCNK12	K2p12.1|THIK-2|THIK2	potassium channel, subfamily K, member 12	protein-coding
19-PTNLD28-TUMOR_peak_33987	chr15	65023457	65023772	+	3.30760	NA	Intergenic	Intergenic	-28134	NM_002537	4947	Hs.744924	NM_002537	HPRD:11966	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
19-PTNLD28-TUMOR_peak_88676	chr6	88541917	88542074	+	3.30760	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	47417	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
19-PTNLD28-TUMOR_peak_28529	chr13	77427215	77427303	+	3.30760	NA	Intergenic	Intergenic	33281	NM_138444	115207	Hs.644125	NM_138444	HPRD:11060	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
19-PTNLD28-TUMOR_peak_92523	chr7	50344228	50344316	+	3.30760	NA	promoter-TSS (NM_006060)	promoter-TSS (NM_006060)	7	NM_001291845	10320	Hs.435949	NM_006060	HPRD:04318	IKZF1	Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1 (Ikaros)	protein-coding
19-PTNLD28-TUMOR_peak_69414	chr3	99432401	99432489	+	3.30760	NA	intron (NM_001850, intron 2 of 4)	intron (NM_001850, intron 2 of 4)	75005	NM_001850	1295	Hs.654548	NM_001850	HPRD:00372	COL8A1	C3orf7	collagen, type VIII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_73561	chr3	195965904	195966072	+	3.30760	NA	intron (NM_005017, intron 9 of 9)	L3b|LINE|CR1	22605	NM_152672	200931	Hs.630585	NM_152672	HPRD:17810	SLC51A	OSTA|OSTalpha	solute carrier family 51, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_45566	chr18	45544121	45544293	+	3.30754	NA	Intergenic	Intergenic	-86690	NM_001003652	4087	Hs.12253	NM_005901	HPRD:03221	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
19-PTNLD28-TUMOR_peak_45	chr1	603977	604146	+	3.30754	NA	Intergenic	L1PA8|LINE|L1	17973	NM_001005224	26683	Hs.632360	NM_001005224	HPRD:14972	OR4F3	-	olfactory receptor, family 4, subfamily F, member 3	protein-coding
19-PTNLD28-TUMOR_peak_61552	chr20	46523887	46524112	+	3.29813	NA	Intergenic	D20S16|Satellite|Satellite	-87971	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
19-PTNLD28-TUMOR_peak_95585	chr7	135547891	135548015	+	3.29086	NA	Intergenic	Intergenic	114251	NM_145808	136319	Hs.602015	NM_145808	HPRD:07574	MTPN	GCDP|V-1	myotrophin	protein-coding
19-PTNLD28-TUMOR_peak_61909	chr20	50029106	50029242	+	3.28891	NA	intron (NM_001258296, intron 9 of 10)	intron (NM_001258296, intron 9 of 10)	40340	NR_036162	100422889		NR_036162		MIR3194	-	microRNA 3194	ncRNA
19-PTNLD28-TUMOR_peak_76808	chr4	120358091	120358179	+	3.28891	NA	Intergenic	Intergenic	-17803	NR_037630	645513	Hs.677546	NR_037630	ENSG00000245958	LOC645513	-	uncharacterized LOC645513	ncRNA
19-PTNLD28-TUMOR_peak_106688	chr9	138370854	138370942	+	3.28891	NA	promoter-TSS (NM_014811)	promoter-TSS (NM_014811)	-750	NM_014811	9858	Hs.533260	NM_014811	HPRD:11099	PPP1R26	KIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding
19-PTNLD28-TUMOR_peak_19080	chr11	63530651	63530739	+	3.28723	NA	3' UTR (NM_001144936, exon 5 of 5)	3' UTR (NM_001144936, exon 5 of 5)	5418	NM_001144936	65998	Hs.191073	NM_001144936		C11orf95	-	chromosome 11 open reading frame 95	protein-coding
19-PTNLD28-TUMOR_peak_37573	chr16	46391566	46391682	+	3.28586	NA	Intergenic	HSATII|Satellite|Satellite	211385	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_99394	chr8	86567737	86567890	+	3.28437	NA	promoter-TSS (NR_003594)	promoter-TSS (NR_003594)	92	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_15090	chr10	99093555	99093674	+	3.27912	NA	3' UTR (NM_012083, exon 1 of 1)	3' UTR (NM_012083, exon 1 of 1)	844	NM_012083	23401	Hs.140720	NM_012083	HPRD:05419	FRAT2	-	frequently rearranged in advanced T-cell lymphomas 2	protein-coding
19-PTNLD28-TUMOR_peak_88807	chr6	93392324	93392450	+	3.27699	NA	Intergenic	Intergenic	736913	NM_001288630	2045	Hs.73962	NM_004440	HPRD:03721	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
19-PTNLD28-TUMOR_peak_92492	chr7	48677184	48677272	+	3.27699	NA	intron (NM_152701, intron 59 of 61)	intron (NM_152701, intron 59 of 61)	-286929	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	pseudo
19-PTNLD28-TUMOR_peak_6886	chr1	152475409	152475497	+	3.27220	NA	Intergenic	Intergenic	-7867	NM_178438	254910	Hs.516410	NM_178438	HPRD:17265	LCE5A	LEP18|SPRL5A	late cornified envelope 5A	protein-coding
19-PTNLD28-TUMOR_peak_26681	chr12	120967899	120967991	+	3.27220	NA	promoter-TSS (NM_032314)	promoter-TSS (NM_032314)	-981	NM_032314	84274	Hs.17250	NM_032314	HPRD:17560	COQ5	-	coenzyme Q5 homolog, methyltransferase (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_46592	chr19	1490407	1490531	+	3.27220	NA	promoter-TSS (NM_017573)	promoter-TSS (NM_017573)	-20	NM_017573	54760	Hs.46884	NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
19-PTNLD28-TUMOR_peak_65020	chr22	30129841	30129932	+	3.26985	NA	intron (NM_001003692, intron 5 of 5)	intron (NM_001003692, intron 5 of 5)	13542	NM_182527	164633	Hs.643608	NM_182527	HPRD:12995	CABP7	CALN2	calcium binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_63697	chr21	43181642	43181791	+	3.26985	NA	intron (NM_020639, intron 1 of 7)	intron (NM_020639, intron 1 of 7)	5533	NM_020639	54101	Hs.517310	NM_020639	HPRD:10419	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_85811	chr6	19838579	19838671	+	3.26854	NA	intron (NM_001546, intron 1 of 2)	CpG	1024	NM_001546	3400	Hs.519601	NM_001546		ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	protein-coding
19-PTNLD28-TUMOR_peak_63594	chr21	41010755	41010886	+	3.26754	NA	intron (NM_001278650, intron 1 of 2)	intron (NM_001278650, intron 1 of 2)	-18427	NM_006057	10317	Hs.733638	NM_006057	HPRD:06818	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding
19-PTNLD28-TUMOR_peak_85289	chr6	10659984	10660148	+	3.26616	NA	Intergenic	LTR12C|LTR|ERV1	34773	NR_026737	347744	Hs.61389	NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
19-PTNLD28-TUMOR_peak_50104	chr19	52546786	52546949	+	3.26616	NA	intron (NM_014650, intron 2 of 4)	LTR5_Hs|LTR|ERVK	5206	NM_014650	9668	Hs.655934	NM_014650	HPRD:11716	ZNF432	-	zinc finger protein 432	protein-coding
19-PTNLD28-TUMOR_peak_20104	chr11	75428849	75429006	+	3.26616	NA	promoter-TSS (NM_025098)	promoter-TSS (NM_025098)	-7	NM_025098	80168	Hs.288568	NM_025098		MOGAT2	DGAT2L5|MGAT2	monoacylglycerol O-acyltransferase 2	protein-coding
19-PTNLD28-TUMOR_peak_64267	chr22	18524978	18525082	+	3.26616	NA	Intergenic	SVA_D|Other|Other	12879	NR_024417	100192420	Hs.589947	NR_024417	ENSG00000235295	FLJ41941	-	uncharacterized LOC100192420	ncRNA
19-PTNLD28-TUMOR_peak_62777	chr21	15095950	15096159	+	3.26616	NA	promoter-TSS (NR_107036).3	promoter-TSS (NR_107036).3	-456	NR_107036	102466252		NR_107036		MIR8069-1	MIR8069|hsa-mir-8069	microRNA 8069-1	ncRNA
19-PTNLD28-TUMOR_peak_66403	chr3	8863966	8864113	+	3.26616	NA	Intergenic	Intergenic	-52739	NM_000916	5021	Hs.2820	NM_000916	HPRD:01328	OXTR	OT-R	oxytocin receptor	protein-coding
19-PTNLD28-TUMOR_peak_9521	chr1	204380373	204380583	+	3.26074	NA	exon (NM_032833, exon 1 of 2)	exon (NM_032833, exon 1 of 2)	467	NM_032833	84919	Hs.304376	NM_032833	HPRD:17892	PPP1R15B	CREP	protein phosphatase 1, regulatory subunit 15B	protein-coding
19-PTNLD28-TUMOR_peak_10910	chr1	233248013	233248187	+	3.25996	NA	intron (NM_014801, intron 21 of 33)	intron (NM_014801, intron 21 of 33)	161730	NM_032324	84284	Hs.642715	NM_032324		NTPCR	C1orf57|HCR-NTPase	nucleoside-triphosphatase, cancer-related	protein-coding
19-PTNLD28-TUMOR_peak_35922	chr16	3333623	3333875	+	3.25444	NA	5' UTR (NM_005741, exon 1 of 6)	5' UTR (NM_005741, exon 1 of 6)	262	NM_005741	10127	Hs.611475	NM_005741	HPRD:05008	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
19-PTNLD28-TUMOR_peak_81771	chr5	121413240	121413431	+	3.25122	NA	promoter-TSS (NM_001178102)	promoter-TSS (NM_001178102)	-417	NM_001178102	4015	Hs.102267	NM_002317	HPRD:01087	LOX	-	lysyl oxidase	protein-coding
19-PTNLD28-TUMOR_peak_42229	chr17	48422987	48423120	+	3.25085	NA	promoter-TSS (NM_022167)	promoter-TSS (NM_022167)	-340	NR_110010	64132	Hs.463416	NM_022167	HPRD:16286	XYLT2	PXYLT2|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding
19-PTNLD28-TUMOR_peak_82446	chr5	137688828	137688931	+	3.25085	NA	intron (NM_016604, intron 1 of 23)	CpG	594	NM_016604	51780	Hs.483486	NM_016604	HPRD:11055	KDM3B	5qNCA|C5orf7|JMJD1B|NET22	lysine (K)-specific demethylase 3B	protein-coding
19-PTNLD28-TUMOR_peak_50000	chr19	51321291	51321431	+	3.25085	NA	intron (NR_038359, intron 2 of 2)	CpG	424	NR_038359	284365	Hs.161397	NR_038359	ENSG00000180279	MGC45922	-	uncharacterized LOC284365	ncRNA
19-PTNLD28-TUMOR_peak_86777	chr6	32937249	32937372	+	3.24994	NA	intron (NM_005104, intron 1 of 12)	intron (NM_005104, intron 1 of 12)	873	NM_005104	6046	Hs.75243	NM_005104	HPRD:03326	BRD2	D6S113E|FSH|FSRG1|NAT|RING3|RNF3	bromodomain containing 2	protein-coding
19-PTNLD28-TUMOR_peak_21745	chr11	122591316	122591445	+	3.24671	NA	intron (NM_032873, intron 1 of 13)	L2a|LINE|L2	64982	NM_032873	84959	Hs.444075	NM_032873	HPRD:16463	UBASH3B	STS-1|STS1|TULA-2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
19-PTNLD28-TUMOR_peak_33158	chr15	40453408	40453496	+	3.24671	NA	exon (NM_001211, exon 1 of 23)	exon (NM_001211, exon 1 of 23)	242	NM_001211	701	Hs.513645	NM_001211	HPRD:04176	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
19-PTNLD28-TUMOR_peak_39089	chr16	84477140	84477228	+	3.24671	NA	intron (NM_014861, intron 15 of 26)	intron (NM_014861, intron 15 of 26)	36990	NM_001291454	9914	Hs.6168	NM_014861	HPRD:13812	ATP2C2	SPCA2	ATPase, Ca++ transporting, type 2C, member 2	protein-coding
19-PTNLD28-TUMOR_peak_110160	chrY	10068679	10068767	+	3.24659	NA	Intergenic	ALR/Alpha|Satellite|centr	320316	NR_001540	252955	Hs.522846	NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis-specific transcript, Y-linked 23 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_86848	chr6	33489285	33489476	+	3.24659	NA	Intergenic	LTR12C|LTR|ERV1	58690	NM_001188	578	Hs.485139	NM_001188	HPRD:02744	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2-antagonist/killer 1	protein-coding
19-PTNLD28-TUMOR_peak_22951	chr12	8778600	8778736	+	3.24659	NA	Intergenic	SVA_E|Other|Other	-13226	NM_020661	57379	Hs.149342	NM_020661	HPRD:05585	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation-induced cytidine deaminase	protein-coding
19-PTNLD28-TUMOR_peak_24142	chr12	49942724	49942812	+	3.24132	NA	exon (NM_012284, exon 8 of 15)	exon (NM_012284, exon 8 of 15)	9828	NM_012284	23416	Hs.64064	NM_012284	HPRD:05164	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding
19-PTNLD28-TUMOR_peak_26433	chr12	113841766	113841854	+	3.24132	NA	promoter-TSS (NM_006843)	promoter-TSS (NM_006843)	-118	NM_006843	10993	Hs.439023	NM_006843	HPRD:01633	SDS	SDH	serine dehydratase	protein-coding
19-PTNLD28-TUMOR_peak_99417	chr8	86826539	86826758	+	3.24115	NA	Intergenic	Intergenic	-10858	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_39383	chr16	88773134	88773237	+	3.23906	NA	promoter-TSS (NM_178841)	promoter-TSS (NM_178841)	294	NM_001012762	348180	Hs.592074	NM_001012759	HPRD:18372	CTU2	C16orf84|NCS2|UPF0432	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
19-PTNLD28-TUMOR_peak_32530	chr15	22487228	22487334	+	3.23556	NA	Intergenic	Intergenic	-59284	NR_033735	646396	Hs.451294	NR_033735		REREP3	-	arginine-glutamic acid dipeptide (RE) repeats pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_40051	chr17	8023011	8023158	+	3.23556	NA	promoter-TSS (NM_001165960)	promoter-TSS (NM_001165960)	-850	NM_001165960	59344	Hs.232770	NM_021628	HPRD:06231	ALOXE3	ARCI3|E-LOX|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
19-PTNLD28-TUMOR_peak_26708	chr12	121341862	121342024	+	3.23317	NA	5' UTR (NM_139015, exon 1 of 11)	5' UTR (NM_139015, exon 1 of 11)	212	NM_139015	121665	Hs.507087	NM_139015	HPRD:09744	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
19-PTNLD28-TUMOR_peak_38265	chr16	66937699	66937787	+	3.23317	NA	Intergenic	Intergenic	15144	NM_001204744	1014	Hs.513660	NM_004062	HPRD:11929	CDH16	-	cadherin 16, KSP-cadherin	protein-coding
19-PTNLD28-TUMOR_peak_53121	chr2	65215516	65215616	+	3.23317	NA	promoter-TSS (NM_001193493)	promoter-TSS (NM_001193493)	-13	NM_001193493	6509	Hs.654352	NM_003038	HPRD:02576	SLC1A4	ASCT1|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding
19-PTNLD28-TUMOR_peak_86260	chr6	27778076	27778175	+	3.22411	NA	exon (NM_003536, exon 1 of 1)	exon (NM_003536, exon 1 of 1)	283	NM_003536	8357	Hs.591778	NM_003536	HPRD:11912	HIST1H3H	H3/k|H3F1K|H3FK	histone cluster 1, H3h	protein-coding
19-PTNLD28-TUMOR_peak_82602	chr5	139569968	139570100	+	3.21682	NA	intron (NM_032412, intron 1 of 2)	HAL1|LINE|L1	15381	NM_032412	84418	Hs.529798	NM_032412		CYSTM1	C5orf32	cysteine-rich transmembrane module containing 1	protein-coding
19-PTNLD28-TUMOR_peak_58147	chr2	210616379	210616513	+	3.21682	NA	Intergenic	L1PA2|LINE|L1	-20271	NM_182587	285175	Hs.396201	NM_032504	HPRD:12809	UNC80	C2orf21|UNC-80	unc-80 homolog (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_42878	chr17	62318234	62318357	+	3.21682	NA	intron (NM_001288732, intron 1 of 11)	intron (NM_001288732, intron 1 of 11)	-10179	NM_001288733	55852	Hs.175414	NM_018469	HPRD:13716	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
19-PTNLD28-TUMOR_peak_26809	chr12	122432034	122432133	+	3.21668	NA	intron (NM_144668, intron 19 of 21)	SVA_F|Other|Other	-27778	NM_020993	605	Hs.530970	NM_020993		BCL7A	BCL7	B-cell CLL/lymphoma 7A	protein-coding
19-PTNLD28-TUMOR_peak_8974	chr1	192469914	192470130	+	3.21668	NA	Intergenic	L1PA2|LINE|L1	-74835	NM_002922	5996	Hs.75256	NM_002922	HPRD:15968	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding
19-PTNLD28-TUMOR_peak_49741	chr19	49188953	49189101	+	3.21504	NA	Intergenic	Intergenic	-10201	NM_000511	2524	Hs.579928	NM_000511	HPRD:01629	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2 (secretor status included)	protein-coding
19-PTNLD28-TUMOR_peak_44051	chr17	80023406	80023499	+	3.21504	NA	intron (NM_022156, intron 1 of 13)	CpG-11397	245	NM_022156	64118	Hs.514599	NM_022156		DUS1L	DUS1|PP3111	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding
19-PTNLD28-TUMOR_peak_7699	chr1	161440106	161440265	+	3.21416	NA	Intergenic	CpG	-35020	NM_021642	2212	Hs.352642	NM_021642	HPRD:00906	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG, low affinity IIa, receptor (CD32)	protein-coding
19-PTNLD28-TUMOR_peak_86867	chr6	33599400	33599557	+	3.21241	NA	intron (NM_002224, intron 1 of 57)	LTR13A|LTR|ERVK	10322	NM_002224	3710	Hs.65758	NM_002224	HPRD:00926	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor, type 3	protein-coding
19-PTNLD28-TUMOR_peak_37161	chr16	29816052	29816199	+	3.20448	NA	intron (NM_001256269, intron 12 of 14)	intron (NM_001256269, intron 12 of 14)	-1292	NM_001276275	4150	Hs.23650	NM_002383	HPRD:02999	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding
19-PTNLD28-TUMOR_peak_56051	chr2	139481320	139481408	+	3.20448	NA	intron (NM_007226, intron 1 of 1)	intron (NM_007226, intron 1 of 1)	56447	NM_007226	11249	Hs.435019	NM_007226		NXPH2	NPH2	neurexophilin 2	protein-coding
19-PTNLD28-TUMOR_peak_33764	chr15	59157757	59157922	+	3.20448	NA	Intergenic	MER77|LTR|ERVL	68013	NM_024755	79811	Hs.512932	NM_017968	HPRD:07819	SLTM	Met	SAFB-like, transcription modulator	protein-coding
19-PTNLD28-TUMOR_peak_80700	chr5	73837186	73837274	+	3.20221	NA	Intergenic	Intergenic	-98618	NM_001292004	3074	Hs.69293	NM_000521	HPRD:06043	HEXB	ENC-1AS|HEL-248	hexosaminidase B (beta polypeptide)	protein-coding
19-PTNLD28-TUMOR_peak_26736	chr12	121734136	121734295	+	3.19874	NA	intron (NM_153500, intron 1 of 14)	CpG	341	NM_172226	10645	Hs.297343	NM_006549	HPRD:06467	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding
19-PTNLD28-TUMOR_peak_596	chr1	9352923	9353023	+	3.19751	NA	promoter-TSS (NM_025106)	promoter-TSS (NM_025106)	32	NM_025106	80176	Hs.8261	NM_025106	HPRD:18106	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
19-PTNLD28-TUMOR_peak_3622	chr1	54590348	54590478	+	3.19651	NA	Intergenic	Intergenic	28266	NM_201546	200008	Hs.568555	NM_201546		CDCP2	-	CUB domain containing protein 2	protein-coding
19-PTNLD28-TUMOR_peak_38193	chr16	65156930	65157063	+	3.19195	NA	Intergenic	CpG-9360	-1077	NM_001797	1009	Hs.116471	NM_001797		CDH11	CAD11|CDHOB|OB|OSF-4	cadherin 11, type 2, OB-cadherin (osteoblast)	protein-coding
19-PTNLD28-TUMOR_peak_52226	chr2	38736650	38736829	+	3.18737	NA	intron (NR_110259, intron 1 of 4)	intron (NR_110259, intron 1 of 4)	6143	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA
19-PTNLD28-TUMOR_peak_7909	chr1	165530701	165530915	+	3.18737	NA	intron (NM_001005214, intron 1 of 1)	intron (NM_001005214, intron 1 of 1)	17330	NM_001005214	440699	Hs.664975	NM_001005214	HPRD:13396	LRRC52	-	leucine rich repeat containing 52	protein-coding
19-PTNLD28-TUMOR_peak_67417	chr3	32434194	32434318	+	3.18737	NA	intron (NM_181472, intron 1 of 3)	intron (NM_181472, intron 1 of 3)	1093	NM_181472	112616	Hs.440494	NM_138410	HPRD:06988	CMTM7	CKLFSF7	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
19-PTNLD28-TUMOR_peak_9061	chr1	197752953	197753068	+	3.18737	NA	Intergenic	Intergenic	-8387	NR_125340	163486	Hs.125056	NM_019049	HPRD:13303	DENND1B	C1ORF18|C1orf218|FAM31B	DENN/MADD domain containing 1B	protein-coding
19-PTNLD28-TUMOR_peak_59056	chr2	237761355	237761485	+	3.18737	NA	Intergenic	Intergenic	-232664	NM_198189	10920	Hs.531713	NM_006710		COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
19-PTNLD28-TUMOR_peak_102479	chr9	21995714	21995862	+	3.18642	NA	intron (NR_120536, intron 1 of 3)	CpG	998	NR_047536	100048912	Hs.493614	NR_003529	ENSG00000240498	CDKN2B-AS1	ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS	CDKN2B antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_14106	chr10	71992369	71992457	+	3.18582	NA	intron (NM_021129, intron 1 of 10)	intron (NM_021129, intron 1 of 10)	777	NM_021129	5464	Hs.437403	NM_021129	HPRD:01527	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	pyrophosphatase (inorganic) 1	protein-coding
19-PTNLD28-TUMOR_peak_73991	chr4	3532625	3532784	+	3.18582	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	1172	NR_110005	4043	Hs.40966	NM_002337		LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
19-PTNLD28-TUMOR_peak_54365	chr2	98226006	98226094	+	3.18402	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-19622	NM_025190	57730	Hs.532921	NM_020970		ANKRD36B	KIAA1641	ankyrin repeat domain 36B	protein-coding
19-PTNLD28-TUMOR_peak_76491	chr4	106816556	106816695	+	3.18402	NA	promoter-TSS (NM_001184692)	promoter-TSS (NM_001184692)	28	NM_001184690	255743	Hs.518921	NM_198278	HPRD:14141	NPNT	EGFL6L|POEM	nephronectin	protein-coding
19-PTNLD28-TUMOR_peak_96065	chr7	143319349	143319440	+	3.18348	NA	intron (NM_173678, intron 1 of 6)	intron (NM_173678, intron 1 of 6)	852	NM_173678	285966	Hs.743565	NM_173678	HPRD:07117	FAM115C	FAM139A	family with sequence similarity 115, member C	protein-coding
19-PTNLD28-TUMOR_peak_27678	chr13	30912810	30912898	+	3.17864	NA	Intergenic	Plat_L3|LINE|CR1	-31230	NM_032116	84056	Hs.243596	NM_032116	HPRD:13753	KATNAL1	-	katanin p60 subunit A-like 1	protein-coding
19-PTNLD28-TUMOR_peak_48776	chr19	36736439	36736527	+	3.16781	NA	Intergenic	CpG	-30497	NM_001042474	147929	Hs.596338	NM_152477	HPRD:15846	ZNF565	-	zinc finger protein 565	protein-coding
19-PTNLD28-TUMOR_peak_42576	chr17	56356730	56356838	+	3.16781	NA	exon (NM_000250, exon 5 of 12)	exon (NM_000250, exon 5 of 12)	1512	NM_000250	4353	Hs.458272	NM_000250	HPRD:06102	MPO	-	myeloperoxidase	protein-coding
19-PTNLD28-TUMOR_peak_100514	chr8	124253148	124253352	+	3.16781	NA	intron (NM_001204180, intron 2 of 5)	CpG	388	NM_032847	84933	Hs.707401	NM_032847	HPRD:08605	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
19-PTNLD28-TUMOR_peak_68530	chr3	57103757	57103889	+	3.16049	NA	intron (NM_181727, intron 1 of 1)	AluJr|SINE|Alu	9354	NM_181727	353324	Hs.129794	NM_181727	HPRD:15426	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
19-PTNLD28-TUMOR_peak_67900	chr3	45926373	45926461	+	3.16049	NA	intron (NM_001276378, intron 2 of 11)	intron (NM_001276378, intron 2 of 11)	-1579	NM_006641	10803	Hs.225946	NM_006641	HPRD:09200	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	chemokine (C-C motif) receptor 9	protein-coding
19-PTNLD28-TUMOR_peak_48101	chr19	18873653	18873794	+	3.16017	NA	intron (NM_001098482, intron 9 of 14)	MER102b|DNA|hAT-Charlie	28391	NM_000095	1311	Hs.1584	NM_000095	HPRD:02632	COMP	EDM1|EPD1|MED|PSACH|THBS5	cartilage oligomeric matrix protein	protein-coding
19-PTNLD28-TUMOR_peak_71539	chr3	147111470	147111580	+	3.15925	NA	intron (NM_001243256, intron 2 of 3)	CpG-19033	-1308	NR_040762	84107	Hs.415766	NM_032153	HPRD:12340	ZIC4	-	Zic family member 4	protein-coding
19-PTNLD28-TUMOR_peak_81792	chr5	121922121	121922270	+	3.15833	NA	Intergenic	Intergenic	-107413	NR_051996	153163	Hs.679757	NR_051996	ENSG00000250328	MGC32805	-	uncharacterized LOC153163	ncRNA
19-PTNLD28-TUMOR_peak_104252	chr9	87787782	87787909	+	3.15833	NA	Intergenic	Intergenic	502553	NM_001018064	4915	Hs.494312	NM_006180	HPRD:02712	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
19-PTNLD28-TUMOR_peak_46380	chr18	77044113	77044201	+	3.15833	NA	intron (NM_198531, intron 13 of 29)	intron (NM_198531, intron 13 of 29)	-111615	NM_001278669	4772	Hs.534074	NM_006162	HPRD:02729	NFATC1	NF-ATC|NFAT2|NFATc	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	protein-coding
19-PTNLD28-TUMOR_peak_61623	chr20	47377063	47377175	+	3.15833	NA	intron (NM_020820, intron 1 of 39)	MIRb|SINE|MIR	67301	NM_020820	57580	Hs.153310	NM_020820	HPRD:06066	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding
19-PTNLD28-TUMOR_peak_73915	chr4	2567272	2567483	+	3.15833	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-59782	NM_001256667	8603	Hs.652364	NM_003704	HPRD:09850	FAM193A	C4orf8	family with sequence similarity 193, member A	protein-coding
19-PTNLD28-TUMOR_peak_98173	chr8	37277213	37277354	+	3.15833	NA	intron (NR_121620, intron 6 of 6)	intron (NR_121620, intron 6 of 6)	74148	NR_121620	100507420	Hs.105962	NR_121620		LOC100507420	-	uncharacterized LOC100507420	ncRNA
19-PTNLD28-TUMOR_peak_94566	chr7	102524108	102524220	+	3.15833	NA	intron (NR_105043, intron 13 of 20)	intron (NR_105043, intron 13 of 20)	-29180	NM_005824	10234	Hs.567412	NM_005824	HPRD:10059	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
19-PTNLD28-TUMOR_peak_76500	chr4	106954177	106954265	+	3.15833	NA	Intergenic	L1PB1|LINE|L1	137624	NM_001184690	255743	Hs.518921	NM_198278	HPRD:14141	NPNT	EGFL6L|POEM	nephronectin	protein-coding
19-PTNLD28-TUMOR_peak_47056	chr19	8429237	8429347	+	3.15378	NA	exon (NM_139314, exon 1 of 7)	exon (NM_139314, exon 1 of 7)	281	NM_001039667	51129	Hs.9613	NM_016109	HPRD:16173	ANGPTL4	ANGPTL2|ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin-like 4	protein-coding
19-PTNLD28-TUMOR_peak_78902	chr5	10555597	10555738	+	3.14515	NA	Intergenic	Intergenic	-8768	NM_001164440	651746	Hs.26039	NM_001164440		ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
19-PTNLD28-TUMOR_peak_10374	chr1	224411674	224411762	+	3.14379	NA	intron (NR_110668, intron 2 of 2)	intron (NR_110668, intron 2 of 2)	4403	NR_110668	101927164	Hs.710128	NR_110668	ENSG00000237101	LOC101927164	-	uncharacterized LOC101927164	ncRNA
19-PTNLD28-TUMOR_peak_83594	chr5	159414156	159414294	+	3.14273	NA	Intergenic	CpG	-21882	NM_001282500	7265	Hs.519718	NM_003314	HPRD:11881	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_44680	chr18	12883493	12883607	+	3.14273	NA	intron (NM_001207013, intron 1 of 10)	CpG	784	NM_080423	5771	Hs.654527	NM_002828	HPRD:06768	PTPN2	PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
19-PTNLD28-TUMOR_peak_101091	chr8	133876900	133877022	+	3.14273	NA	Intergenic	Intergenic	-2244	NM_003235	7038	Hs.654591	NM_003235	HPRD:01782	TG	AITD3|TGN	thyroglobulin	protein-coding
19-PTNLD28-TUMOR_peak_2773	chr1	41248329	41248417	+	3.13842	NA	Intergenic	Intergenic	-1311	NM_172163	9132	Hs.473058	NM_004700	HPRD:04641	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel, KQT-like subfamily, member 4	protein-coding
19-PTNLD28-TUMOR_peak_94435	chr7	101161853	101161981	+	3.12929	NA	intron (NM_133457, intron 3 of 12)	intron (NM_133457, intron 3 of 12)	50369	NR_103748	100506527	Hs.535863	NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
19-PTNLD28-TUMOR_peak_53063	chr2	64557161	64557303	+	3.12929	NA	Intergenic	Intergenic	101697	NR_120420	100507006	Hs.442789	NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
19-PTNLD28-TUMOR_peak_53293	chr2	69608470	69608700	+	3.12929	NA	intron (NM_002056, intron 1 of 18)	intron (NM_002056, intron 1 of 18)	5801	NM_001244710	2673	Hs.580300	NM_002056	HPRD:00702	GFPT1	CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
19-PTNLD28-TUMOR_peak_55573	chr2	128433040	128433160	+	3.12499	NA	promoter-TSS (NM_001136037)	promoter-TSS (NM_001136037)	-336	NM_001136037	55679	Hs.469881	NM_017980	ENSG00000072163	LIMS2	PINCH-2|PINCH2	LIM and senescent cell antigen-like domains 2	protein-coding
19-PTNLD28-TUMOR_peak_65072	chr22	30722821	30722958	+	3.12499	NA	promoter-TSS (NM_001204240)	promoter-TSS (NM_001204240)	66	NM_001204240	83874	Hs.655273	NM_031937	HPRD:18162	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family, member 10A	protein-coding
19-PTNLD28-TUMOR_peak_107107	chrUn_gl000220	104533	104801	+	3.12378	NA	promoter-TSS (NR_046235)	promoter-TSS (NR_046235)	-757	NR_046235	100861532		NR_046235		RNA45S5	RN45S	RNA, 45S pre-ribosomal 5	rRNA
19-PTNLD28-TUMOR_peak_3257	chr1	47141590	47141678	+	3.12032	NA	3' UTR (NM_014774, exon 11 of 11)	3' UTR (NM_014774, exon 11 of 11)	1926	NR_038827	100130197	Hs.568643	NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_78632	chr5	1005101	1005266	+	3.10937	NA	Intergenic	CpG	-3894	NM_033120	85409	Hs.240951	NM_033120	HPRD:08483	NKD2	Naked2	naked cuticle homolog 2 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_55317	chr2	120755184	120755333	+	3.10081	NA	Intergenic	LTR12C|LTR|ERV1	-15346	NM_001184939	57669	Hs.369232	NM_020909	HPRD:13273	EPB41L5	BE37|YMO1	erythrocyte membrane protein band 4.1 like 5	protein-coding
19-PTNLD28-TUMOR_peak_92557	chr7	51209277	51209470	+	3.10081	NA	intron (NM_001287436, intron 5 of 13)	intron (NM_001287436, intron 5 of 13)	175142	NM_015198	23242	Hs.99141	NM_015198	HPRD:10843	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
19-PTNLD28-TUMOR_peak_31399	chr14	77365011	77365190	+	3.10081	NA	Intergenic	SVA_B|Other|Other	72375	NM_194287	145497	Hs.147276	NM_194287	HPRD:12621	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
19-PTNLD28-TUMOR_peak_68692	chr3	62170253	62170438	+	3.09671	NA	intron (NM_002841, intron 8 of 29)	intron (NM_002841, intron 8 of 29)	134277	NR_038281	100506994	Hs.656620	NR_038281	ENSG00000241472	PTPRG-AS1	-	PTPRG antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_35303	chr15	93257392	93257550	+	3.09671	NA	Intergenic	L1MB3|LINE|L1	-58440	NM_207446	400451	Hs.27373	NM_207446	HPRD:14220	FAM174B	-	family with sequence similarity 174, member B	protein-coding
19-PTNLD28-TUMOR_peak_60582	chr20	32255260	32255419	+	3.09430	NA	exon (NM_001024675, exon 1 of 1)	exon (NM_001024675, exon 1 of 1)	1035	NM_001024675	170487	Hs.592151	NM_001024675	HPRD:18570	ACTL10	C20orf134|dJ63M2.2	actin-like 10	protein-coding
19-PTNLD28-TUMOR_peak_92620	chr7	55087618	55087787	+	3.08979	NA	intron (NM_201284, intron 1 of 15)	CpG	977	NM_005228	1956	Hs.488293	NM_005228	HPRD:00579	EGFR	ERBB|ERBB1|HER1|PIG61|mENA	epidermal growth factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_44486	chr18	9137788	9137927	+	3.08605	NA	5' UTR (NM_001204056, exon 1 of 12)	5' UTR (NM_001204056, exon 1 of 12)	296	NM_001204056	23253	Hs.464585	NM_015208	HPRD:12457	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
19-PTNLD28-TUMOR_peak_67555	chr3	38045981	38046091	+	3.08205	NA	intron (NM_015873, intron 15 of 18)	intron (NM_015873, intron 15 of 18)	10958	NM_015873	50853	Hs.103665	NM_015873	HPRD:18283	VILL	-	villin-like	protein-coding
19-PTNLD28-TUMOR_peak_89273	chr6	119215837	119216137	+	3.08144	NA	intron (NM_014034, intron 1 of 3)	CpG	746	NM_014034	25842	Hs.292316	NM_014034	HPRD:16459	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
19-PTNLD28-TUMOR_peak_107079	chrUn_gl000217	53044	53184	+	3.07527	NA	NA	TAR1|Satellite|telo	NA	NA								
19-PTNLD28-TUMOR_peak_8406	chr1	177271531	177271638	+	3.07285	NA	Intergenic	Intergenic	130951	NM_021165	57795	Hs.495918	NM_021165	HPRD:13891	BRINP2	DBCCR1L2|FAM5B	bone morphogenetic protein/retinoic acid inducible neural-specific 2	protein-coding
19-PTNLD28-TUMOR_peak_59613	chr20	4142672	4142940	+	3.07255	NA	intron (NM_001270691, intron 1 of 7)	intron (NM_001270691, intron 1 of 7)	13380	NM_175841	54498	Hs.433337	NM_175839	HPRD:11587	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
19-PTNLD28-TUMOR_peak_24731	chr12	57184210	57184345	+	3.07255	NA	Intergenic	SVA_D|Other|Other	27275	NM_003725	8630	Hs.524513	NM_003725	HPRD:09431	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding
19-PTNLD28-TUMOR_peak_85869	chr6	21360605	21360915	+	3.07255	NA	Intergenic	HERVL32-int|LTR|ERVL	151363	NR_103790	100874531	Hs.112750	NR_103790		LINC00581	-	long intergenic non-protein coding RNA 581	ncRNA
19-PTNLD28-TUMOR_peak_76555	chr4	109683837	109683925	+	3.07255	NA	intron (NM_001146590, intron 1 of 12)	CpG	354	NM_001146627	64850	Hs.106576	NM_031279	HPRD:10639	ETNPPL	AGXT2L1	ethanolamine-phosphate phospho-lyase	protein-coding
19-PTNLD28-TUMOR_peak_94123	chr7	97720520	97720608	+	3.07255	NA	Intergenic	L1MB7|LINE|L1	-15633	NM_014916	22853	Hs.444179	NM_014916	HPRD:13994	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk	lemur tyrosine kinase 2	protein-coding
19-PTNLD28-TUMOR_peak_109104	chrX	106972996	106973084	+	3.07249	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-12749	NM_004089	1831	Hs.522074	NM_004089	HPRD:04266	TSC22D3	DIP|DSIPI|GILZ|TSC-22R|hDIP	TSC22 domain family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_523	chr1	8468403	8468493	+	3.07249	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	15299	NM_001042682	473	Hs.463041	NM_012102	HPRD:05566	RERE	ARG|ARP|ATN1L|DNB1	arginine-glutamic acid dipeptide (RE) repeats	protein-coding
19-PTNLD28-TUMOR_peak_67623	chr3	39425385	39425508	+	3.06888	NA	intron (NM_017875, intron 1 of 6)	CpG	631	NM_017875	54977	Hs.369615	NM_017875	HPRD:07925	SLC25A38	-	solute carrier family 25, member 38	protein-coding
19-PTNLD28-TUMOR_peak_36705	chr16	20910582	20910720	+	3.06791	NA	promoter-TSS (NM_020424)	promoter-TSS (NM_020424)	-906	NM_020424	57149	Hs.745012	NM_020424	HPRD:14254	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
19-PTNLD28-TUMOR_peak_73727	chr4	298788	298931	+	3.06004	NA	Intergenic	CpG	-8915	NM_001137608	654254	Hs.698668	NM_001137608		ZNF732	-	zinc finger protein 732	protein-coding
19-PTNLD28-TUMOR_peak_17872	chr11	32915372	32915532	+	3.05580	NA	intron (NM_001076786, intron 1 of 12)	CpG	728	NM_001076786	79832	Hs.369368	NM_024774	HPRD:08645	QSER1	-	glutamine and serine rich 1	protein-coding
19-PTNLD28-TUMOR_peak_34289	chr15	70584184	70584279	+	3.04975	NA	Intergenic	Intergenic	-193975	NM_001105192	7090	Hs.287362	NM_005078	HPRD:02558	TLE3	ESG|ESG3|GRG3|HsT18976	transducin-like enhancer of split 3	protein-coding
19-PTNLD28-TUMOR_peak_44568	chr18	10661786	10661874	+	3.04975	NA	promoter-TSS (NR_110777)	promoter-TSS (NR_110777)	-100	NR_110777	101927410	Hs.436902	NR_110777	ENSG00000260779	LOC101927410	-	uncharacterized LOC101927410	ncRNA
19-PTNLD28-TUMOR_peak_55159	chr2	115303622	115303753	+	3.04975	NA	intron (NM_001178036, intron 2 of 26)	MSTA|LTR|ERVL-MaLR	84507	NM_001178036	57628	Hs.580539	NM_020868	HPRD:07083	DPP10	DPL2|DPPY|DPRP-3|DPRP3	dipeptidyl-peptidase 10 (non-functional)	protein-coding
19-PTNLD28-TUMOR_peak_4770	chr1	89920739	89920962	+	3.04441	NA	Intergenic	Intergenic	47612	NR_003133	400759	Hs.661968	NR_003133	ENSG00000225492	GBP1P1	-	guanylate binding protein 1, interferon-inducible pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_64837	chr22	25758103	25758335	+	3.04441	NA	5' UTR (NM_182492, exon 1 of 4)	5' UTR (NM_182492, exon 1 of 4)	305	NM_182492	91355	Hs.634058	NM_182492	HPRD:13200	LRP5L	-	low density lipoprotein receptor-related protein 5-like	protein-coding
19-PTNLD28-TUMOR_peak_64768	chr22	24834032	24834120	+	3.04441	NA	TTS (NR_028483)	TTS (NR_028483)	5989	NM_001278497	135	Hs.197029	NM_000675	HPRD:00043	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
19-PTNLD28-TUMOR_peak_8470	chr1	178624948	178625072	+	3.04441	NA	Intergenic	Intergenic	-21874	NR_039622	100616328		NR_039622	miRBase:MI0016763	MIR4424	-	microRNA 4424	ncRNA
19-PTNLD28-TUMOR_peak_106086	chr9	128170395	128170616	+	3.04441	NA	Intergenic	CpG	109336	NM_001282681	26130	Hs.495134	NM_015635	HPRD:10886	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
19-PTNLD28-TUMOR_peak_66431	chr3	9164526	9164629	+	3.04441	NA	intron (NM_001033117, intron 2 of 21)	intron (NM_001033117, intron 2 of 21)	-69600	NR_121664	101927416	Hs.475364	NR_121663		LOC101927416	-	uncharacterized LOC101927416	ncRNA
19-PTNLD28-TUMOR_peak_67891	chr3	45835450	45835538	+	3.04441	NA	intron (NM_022405, intron 1 of 9)	intron (NM_022405, intron 1 of 9)	2541	NM_022405	54716	Hs.413095	NM_020208	HPRD:16128	SLC6A20	SIT1|XT3|Xtrp3	solute carrier family 6 (proline IMINO transporter), member 20	protein-coding
19-PTNLD28-TUMOR_peak_52444	chr2	43823588	43823760	+	3.04441	NA	promoter-TSS (NM_001271644)	promoter-TSS (NM_001271644)	-489	NR_073394	63892	Hs.369592	NM_022065	HPRD:18177	THADA	GITA	thyroid adenoma associated	protein-coding
19-PTNLD28-TUMOR_peak_52332	chr2	42235358	42235516	+	3.04441	NA	Intergenic	MIR3|SINE|MIR	-39724	NM_138370	91461	Hs.408542	NM_138370	HPRD:18707	PKDCC	SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
19-PTNLD28-TUMOR_peak_51910	chr2	29746221	29746309	+	3.04441	NA	intron (NM_004304, intron 4 of 28)	L2c|LINE|L2	398212	NM_004304	238	Hs.654469	NM_004304	HPRD:00104	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding
19-PTNLD28-TUMOR_peak_90224	chr6	157732262	157732390	+	3.04398	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	12965	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
19-PTNLD28-TUMOR_peak_882	chr1	13144356	13144472	+	3.04261	NA	Intergenic	Intergenic	22779	NR_111945	645354		NR_111945		LOC645354	-	PRAME family member 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_90800	chr7	1093881	1093969	+	3.03764	NA	intron (NM_001134395, intron 2 of 4)	intron (NM_001134395, intron 2 of 4)	-3216	NM_138445	115330	Hs.585007	NM_138445	HPRD:17064	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
19-PTNLD28-TUMOR_peak_22959	chr12	8849799	8849978	+	3.03764	NA	promoter-TSS (NM_001297776)	promoter-TSS (NM_001297776)	-608	NM_001297776	57494	Hs.504670	NM_020734	HPRD:13844	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK-like family member B	protein-coding
19-PTNLD28-TUMOR_peak_60652	chr20	33146772	33146963	+	3.02907	NA	intron (NM_032514, intron 1 of 3)	CpG	366	NM_032514	84557	Hs.632273	NM_032514	HPRD:03144	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule-associated protein 1 light chain 3 alpha	protein-coding
19-PTNLD28-TUMOR_peak_65956	chr22	46375049	46375138	+	3.02843	NA	Intergenic	CpG-17986	-2085	NM_058238	7477	Hs.512714	NM_058238	HPRD:03573	WNT7B	-	wingless-type MMTV integration site family, member 7B	protein-coding
19-PTNLD28-TUMOR_peak_93399	chr7	75044443	75044547	+	3.02776	NA	non-coding (NR_033322, exon 7 of 11)	non-coding (NR_033322, exon 7 of 11)	4890	NR_033322	155400	Hs.436034	NM_001039575		NSUN5P1	NSUN5B|WBSCR20B	NOP2/Sun domain family, member 5 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_21432	chr11	117186431	117186561	+	3.02678	NA	exon (NM_138971, exon 1 of 9)	exon (NM_138971, exon 1 of 9)	476	NM_012104	23621	Hs.504003	NM_012104	HPRD:07255	BACE1	ASP2|BACE|HSPC104	beta-site APP-cleaving enzyme 1	protein-coding
19-PTNLD28-TUMOR_peak_32144	chr14	102983294	102983382	+	3.02678	NA	Intergenic	CpG	-7210	NM_152326	122416	Hs.432945	NM_152326	HPRD:12467	ANKRD9	-	ankyrin repeat domain 9	protein-coding
19-PTNLD28-TUMOR_peak_83290	chr5	151076288	151076450	+	3.02023	NA	Intergenic	Intergenic	-9754	NM_003118	6678	Hs.111779	NM_003118	HPRD:01631	SPARC	ON	secreted protein, acidic, cysteine-rich (osteonectin)	protein-coding
19-PTNLD28-TUMOR_peak_23550	chr12	27934063	27934300	+	3.02020	NA	intron (NM_020782, intron 1 of 2)	intron (NM_020782, intron 1 of 2)	994	NM_020782	57542	Hs.505104	NM_020782	HPRD:17237	KLHL42	Ctb9|KLHDC5	kelch-like family member 42	protein-coding
19-PTNLD28-TUMOR_peak_1199	chr1	19276338	19276426	+	3.01689	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	6444	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
19-PTNLD28-TUMOR_peak_186	chr1	1840059	1840230	+	3.01486	NA	Intergenic	CpG	-6122	NM_138705	163688	Hs.85902	NM_138705	HPRD:12997	CALML6	CAGLP	calmodulin-like 6	protein-coding
19-PTNLD28-TUMOR_peak_78338	chr4	186049982	186050238	+	3.00382	NA	Intergenic	CpG	-14307	NM_001151	291	Hs.246506	NM_001151	HPRD:00058	SLC25A4	1|AAC1|ANT|ANT 1|ANT1|MTDPS12|PEO2|PEO3|T1	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	protein-coding
19-PTNLD28-TUMOR_peak_66585	chr3	11173221	11173335	+	3.00382	NA	Intergenic	Intergenic	-5501	NM_001098213	3269	Hs.1570	NM_000861	HPRD:02544	HRH1	H1-R|hisH1	histamine receptor H1	protein-coding
19-PTNLD28-TUMOR_peak_86234	chr6	27486784	27487001	+	3.00382	NA	Intergenic	CpG	-45995	NM_007149	7738	Hs.158174	NM_007149	HPRD:03785	ZNF184	-	zinc finger protein 184	protein-coding
19-PTNLD28-TUMOR_peak_96632	chr7	155372095	155372218	+	3.00316	NA	Intergenic	Intergenic	-45617	NM_001103176	285888	Hs.146751	NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
19-PTNLD28-TUMOR_peak_82062	chr5	131344752	131344875	+	3.00316	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	2542	NM_001205247	23305	Hs.14945	NM_015256	HPRD:09190	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long-chain family member 6	protein-coding
19-PTNLD28-TUMOR_peak_14477	chr10	79625850	79625960	+	3.00316	NA	intron (NM_004747, intron 2 of 31)	intron (NM_004747, intron 2 of 31)	60443	NM_004747	9231	Hs.652690	NM_004747	HPRD:04972	DLG5	LP-DLG|P-DLG5|PDLG	discs, large homolog 5 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_48017	chr19	18264949	18265073	+	3.00272	NA	intron (NR_073517, intron 1 of 15)	intron (NR_073517, intron 1 of 15)	1023	NM_005027	5296	Hs.371344	NM_005027	HPRD:04404	PIK3R2	MPPH|P85B|p85|p85-BETA	phosphoinositide-3-kinase, regulatory subunit 2 (beta)	protein-coding
19-PTNLD28-TUMOR_peak_107109	chrUn_gl000220	105690	105871	+	3.00197	NA	non-coding (NR_046235, exon 1 of 1)	non-coding (NR_046235, exon 1 of 1)	356	NR_046235	100861532		NR_046235		RNA45S5	RN45S	RNA, 45S pre-ribosomal 5	rRNA
19-PTNLD28-TUMOR_peak_32834	chr15	30917946	30918048	+	3.00103	NA	promoter-TSS (NM_001039841)	promoter-TSS (NM_001039841)	-882	NM_001039841	89839	Hs.659621	NM_001039841	ENSG00000187951	ARHGAP11B	B'-T|FAM7B1	Rho GTPase activating protein 11B	protein-coding
19-PTNLD28-TUMOR_peak_27355	chr13	20752300	20752388	+	2.99875	NA	Intergenic	Intergenic	14770	NM_004004	2706	Hs.524894	NM_004004	HPRD:00413	GJB2	CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein, beta 2, 26kDa	protein-coding
19-PTNLD28-TUMOR_peak_19943	chr11	73087967	73088109	+	2.99721	NA	intron (NM_032871, intron 1 of 10)	CpG	325	NM_032871	84957	Hs.533720	NM_032871	HPRD:15544	RELT	TNFRSF19L|TRLT	RELT tumor necrosis factor receptor	protein-coding
19-PTNLD28-TUMOR_peak_142	chr1	1334407	1334541	+	2.99247	NA	promoter-TSS (NR_015434)	promoter-TSS (NR_015434)	244	NM_001039577	81669	Hs.515704	NM_030937	HPRD:10815	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
19-PTNLD28-TUMOR_peak_45624	chr18	46066053	46066141	+	2.99247	NA	intron (NM_014772, intron 1 of 11)	CpG	670	NM_001142397	9811	Hs.145230	NM_014772	HPRD:11083	CTIF	Gm672|KIAA0427	CBP80/20-dependent translation initiation factor	protein-coding
19-PTNLD28-TUMOR_peak_67299	chr3	28616863	28617052	+	2.98927	NA	intron (NR_038840, intron 1 of 4)	CpG	188	NR_038840	645206	Hs.376725	NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	ncRNA
19-PTNLD28-TUMOR_peak_21050	chr11	109053727	109053896	+	2.98927	NA	Intergenic	L1HS|LINE|L1	-239035	NM_207645	399947	Hs.172982	NM_207645	HPRD:14218	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
19-PTNLD28-TUMOR_peak_109742	chrX	149634348	149634589	+	2.98927	NA	intron (NM_005491, intron 2 of 6)	intron (NM_005491, intron 2 of 6)	20748	NM_005491	10046	Hs.20136	NM_005491	HPRD:02126	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind-like domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_27137	chr12	128663187	128663366	+	2.98927	NA	Intergenic	AluJr|SINE|Alu	60514	NR_104648	101927694	Hs.524849	NR_104648	ENSG00000256659	LOC101927694	-	uncharacterized LOC101927694	ncRNA
19-PTNLD28-TUMOR_peak_79025	chr5	14397991	14398146	+	2.98927	NA	intron (NM_007118, intron 29 of 56)	MLT1J|LTR|ERVL-MaLR	-183823	NM_019018	54491	Hs.155085	NM_019018		FAM105A	NET20	family with sequence similarity 105, member A	protein-coding
19-PTNLD28-TUMOR_peak_25457	chr12	81330952	81331121	+	2.98927	NA	intron (NM_004664, intron 1 of 5)	CpG	658	NM_004664	8825	Hs.144333	NM_004664	HPRD:04542	LIN7A	LIN-7A|LIN7|MALS-1|TIP-33|VELI1	lin-7 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_80246	chr5	63986229	63986317	+	2.98927	NA	5' UTR (NM_001164442, exon 1 of 3)	5' UTR (NM_001164442, exon 1 of 3)	138	NM_001164442	100132916	Hs.591776	NM_001164442	ENSG00000145642	FAM159B	-	family with sequence similarity 159, member B	protein-coding
19-PTNLD28-TUMOR_peak_14251	chr10	73680518	73680606	+	2.98927	NA	Intergenic	LTR8|LTR|ERV1	-43558	NM_004273	9469	Hs.158304	NM_004273	HPRD:07052	CHST3	C6ST|C6ST1|HSD	carbohydrate (chondroitin 6) sulfotransferase 3	protein-coding
19-PTNLD28-TUMOR_peak_36474	chr16	15212018	15212138	+	2.98717	NA	intron (NR_123722, intron 10 of 17)	LTR48|LTR|ERV1	13380	NR_123722	353511	Hs.634612	NR_123722		PKD1P6	HG6	polycystic kidney disease 1 (autosomal dominant) pseudogene 6	pseudo
19-PTNLD28-TUMOR_peak_88587	chr6	85484028	85484218	+	2.98373	NA	Intergenic	CpG	-10169	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	-	T-box 18	protein-coding
19-PTNLD28-TUMOR_peak_99104	chr8	69611694	69611830	+	2.98143	NA	intron (NM_052958, intron 8 of 13)	intron (NM_052958, intron 8 of 13)	-368036	NR_038877	286189	Hs.593427	NR_038877	ENSG00000248801	LOC286189	-	uncharacterized LOC286189	ncRNA
19-PTNLD28-TUMOR_peak_4828	chr1	91440564	91440733	+	2.98143	NA	intron (NM_201269, intron 2 of 5)	L2a|LINE|L2	46417	NM_016620	84146	Hs.173001	NM_016620	HPRD:15885	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
19-PTNLD28-TUMOR_peak_101253	chr8	136697866	136697954	+	2.98143	NA	Intergenic	Intergenic	228194	NM_006558	10656	Hs.444558	NM_006558	HPRD:10007	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
19-PTNLD28-TUMOR_peak_718	chr1	10848670	10848833	+	2.98143	NA	intron (NM_017766, intron 1 of 15)	intron (NM_017766, intron 1 of 15)	7982	NM_001079843	54897	Hs.439894	NM_017766	HPRD:07897	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_8435	chr1	178030259	178030351	+	2.96895	NA	Intergenic	UCON29|DNA|PiggyBac?	-23163	NR_037167	730102	Hs.733192	NR_037167	ENSG00000242193	LOC730102	-	quinone oxidoreductase-like protein 2 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_98956	chr8	61565123	61565284	+	2.96822	NA	Intergenic	Intergenic	-26121	NM_017780	55636	Hs.20395	NM_017780	HPRD:10595	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
19-PTNLD28-TUMOR_peak_607	chr1	9470994	9471131	+	2.96420	NA	Intergenic	Intergenic	17913	NR_104623	100506022	Hs.131775	NR_104622		LOC100506022	-	uncharacterized LOC100506022	ncRNA
19-PTNLD28-TUMOR_peak_105918	chr9	124649216	124649309	+	2.96227	NA	intron (NM_001139442, intron 6 of 8)	intron (NM_001139442, intron 6 of 8)	144198	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
19-PTNLD28-TUMOR_peak_92055	chr7	37589165	37589253	+	2.96227	NA	Intergenic	L2b|LINE|L2	-100280	NM_001206480	9844	Hs.434989	NM_014800	HPRD:12102	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
19-PTNLD28-TUMOR_peak_104665	chr9	96572515	96572603	+	2.96227	NA	Intergenic	Intergenic	-9080	NR_036254	100422927		NR_036254	miRBase:MI0015900	MIR4291	-	microRNA 4291	ncRNA
19-PTNLD28-TUMOR_peak_8665	chr1	182090040	182090128	+	2.96227	NA	Intergenic	Intergenic	-59237	NM_001009992	127665	Hs.684328	NM_001009992	HPRD:18361	ZNF648	-	zinc finger protein 648	protein-coding
19-PTNLD28-TUMOR_peak_85321	chr6	11166755	11166881	+	2.96227	NA	Intergenic	Intergenic	-54747	NM_207582	405754	Hs.631996	NM_207582	HPRD:13648	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD, member 1	protein-coding
19-PTNLD28-TUMOR_peak_26725	chr12	121581808	121581896	+	2.96227	NA	intron (NR_033953, intron 1 of 10)	L1MB7|LINE|L1	11221	NR_033955	5027	Hs.729169	NM_002562	HPRD:03977	P2RX7	P2X7	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding
19-PTNLD28-TUMOR_peak_60917	chr20	36544315	36544403	+	2.95995	NA	intron (NM_080607, intron 1 of 3)	intron (NM_080607, intron 1 of 3)	12860	NM_080607	128434	Hs.517029	NM_080607	HPRD:12735	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
19-PTNLD28-TUMOR_peak_34965	chr15	85043588	85043676	+	2.94616	NA	Intergenic	CpG	-2174	NR_033787	440299	Hs.454641	NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	DNM1 pseudogene 41	pseudo
19-PTNLD28-TUMOR_peak_101794	chr8	145912933	145913224	+	2.94272	NA	Intergenic	Intergenic	67892	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
19-PTNLD28-TUMOR_peak_74636	chr4	16227974	16228170	+	2.93620	NA	promoter-TSS (NM_153365)	promoter-TSS (NM_153365)	89	NM_153365	202018	Hs.479223	NM_153365	ENSG00000169762	TAPT1	CMVFR	transmembrane anterior posterior transformation 1	protein-coding
19-PTNLD28-TUMOR_peak_48991	chr19	39738384	39738639	+	2.93541	NA	intron (NM_001276254, intron 3 of 5)	CpG-13689	985	NM_001276254	101180976	Hs.745579	NM_001276254		IFNL4	IFNAN	interferon, lambda 4 (gene/pseudogene)	protein-coding
19-PTNLD28-TUMOR_peak_16878	chr11	6589860	6589969	+	2.93541	NA	exon (NM_144666, exon 39 of 43)	exon (NM_144666, exon 39 of 43)	34966	NM_015324	23378	Hs.652255	NM_015324		RRP8	KIAA0409|NML	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding
19-PTNLD28-TUMOR_peak_3577	chr1	53900341	53900508	+	2.93541	NA	Intergenic	HERVH-int|LTR|ERV1	5269	NR_002314	163742	Hs.99394	NR_002314	ENSG00000236253	SLC25A3P1	-	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_48863	chr19	38586478	38586572	+	2.93541	NA	intron (NM_015073, intron 4 of 21)	intron (NM_015073, intron 4 of 21)	128365	NM_001289978	8193	Hs.631576	NM_004647	HPRD:03393	DPF1	BAF45b|NEUD4|neuro-d4	D4, zinc and double PHD fingers family 1	protein-coding
19-PTNLD28-TUMOR_peak_43583	chr17	74677458	74677565	+	2.93541	NA	intron (NM_198530, intron 3 of 3)	intron (NM_198530, intron 3 of 3)	29545	NM_198530	439921	Hs.250723	NM_198530	HPRD:18199	MXRA7	PS1TP1|TMAP1	matrix-remodelling associated 7	protein-coding
19-PTNLD28-TUMOR_peak_97148	chr8	11059337	11059430	+	2.91870	NA	promoter-TSS (NM_173683)	promoter-TSS (NM_173683)	-508	NM_173683	286046	Hs.657083	NM_173683	HPRD:12926	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK, Kell blood group complex subunit-related family, member 6	protein-coding
19-PTNLD28-TUMOR_peak_103526	chr9	68418835	68418923	+	2.91645	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	35496	NR_033907	642236	Hs.529357	NR_033907		LOC642236	-	FSHD region gene 1 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_22626	chr12	5019948	5020098	+	2.91411	NA	5' UTR (NM_000217, exon 2 of 2)	5' UTR (NM_000217, exon 2 of 2)	950	NM_000217	3736	Hs.416139	NM_000217	HPRD:08885	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	protein-coding
19-PTNLD28-TUMOR_peak_45807	chr18	51675866	51676030	+	2.90864	NA	Intergenic	Intergenic	72834	NR_002970	677819	Hs.655869	NR_002970		SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
19-PTNLD28-TUMOR_peak_34060	chr15	66430865	66431016	+	2.90864	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	98369	NR_036196	100422905		NR_036196	miRBase:MI0015841	MIR4311	-	microRNA 4311	ncRNA
19-PTNLD28-TUMOR_peak_14921	chr10	94135906	94136089	+	2.90864	NA	Intergenic	SVA_F|Other|Other	-42421	NR_038243	100507674	Hs.568772	NR_038243		MARK2P9	-	MAP/microtubule affinity-regulating kinase 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_78228	chr4	184253665	184253841	+	2.90864	NA	Intergenic	Intergenic	-10174	NM_001185149	100132463	Hs.727475	NM_001185149	ENSG00000185758	CLDN24	CLDN21	claudin 24	protein-coding
19-PTNLD28-TUMOR_peak_14315	chr10	75173135	75173223	+	2.90234	NA	intron (NM_001156, intron 1 of 12)	intron (NM_001156, intron 1 of 12)	662	NM_004034	310	Hs.631827	NM_001156	HPRD:01720	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
19-PTNLD28-TUMOR_peak_67137	chr3	23243747	23243954	+	2.90234	NA	promoter-TSS (NM_152653)	promoter-TSS (NM_152653)	-934	NM_152653	7325	Hs.475688	NM_152653		UBE2E2	UBCH8	ubiquitin-conjugating enzyme E2E 2	protein-coding
19-PTNLD28-TUMOR_peak_99395	chr8	86568429	86568566	+	2.89694	NA	promoter-TSS (NR_003594)	promoter-TSS (NR_003594)	-592	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_97156	chr8	11306785	11306922	+	2.89218	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	17423	NM_053279	83648	Hs.124299	NM_053279	HPRD:12924	FAM167A	C8orf13|D8S265	family with sequence similarity 167, member A	protein-coding
19-PTNLD28-TUMOR_peak_16941	chr11	8040458	8040589	+	2.89218	NA	Intergenic	CpG	-2467	NR_125366	103581031	Hs.249366	NR_125366		CASC23	LINC01464	cancer susceptibility candidate 23 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_9407	chr1	203236791	203236879	+	2.88825	NA	Intergenic	Intergenic	-19445	NR_117097	100506775	Hs.443859	NR_117097		LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
19-PTNLD28-TUMOR_peak_37148	chr16	29638153	29638241	+	2.88825	NA	Intergenic	L1MB7|LINE|L1	-13159	NR_002593	81893	Hs.677169	NM_031211	HPRD:13964	SLC7A5P1	DC49|LAT1-3TM|MLAS|hLAT1-3TM	solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1	pseudo
19-PTNLD28-TUMOR_peak_44549	chr18	10454588	10454734	+	2.88244	NA	promoter-TSS (NM_153000)	promoter-TSS (NM_153000)	36	NM_153000	147495	Hs.293274	NM_153000		APCDD1	B7323|DRAPC1|HHS|HTS|HYPT1	adenomatosis polyposis coli down-regulated 1	protein-coding
19-PTNLD28-TUMOR_peak_60774	chr20	34745091	34745201	+	2.88165	NA	intron (NM_012156, intron 1 of 21)	AluSc|SINE|Alu	2484	NM_012156	2036	Hs.437422	NM_012156	HPRD:04193	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1-like 1	protein-coding
19-PTNLD28-TUMOR_peak_105412	chr9	113800982	113801117	+	2.87027	NA	promoter-TSS (NM_001401)	promoter-TSS (NM_001401)	-684	NM_057159	1902	Hs.126667	NM_001401	HPRD:03790	LPAR1	EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1	lysophosphatidic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_73834	chr4	1522420	1522567	+	2.87027	NA	Intergenic	CpG	-122263	NM_001290079	54729	Hs.526396	NM_001290079		NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_83604	chr5	159510609	159510736	+	2.87027	NA	intron (NM_052927, intron 2 of 3)	intron (NM_052927, intron 2 of 3)	35780	NM_001130864	114825	Hs.744960	NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
19-PTNLD28-TUMOR_peak_66684	chr3	12764995	12765117	+	2.87027	NA	Intergenic	AluJr|SINE|Alu	35752	NM_001284407	55287	Hs.475502	NM_018306	HPRD:08559	TMEM40	-	transmembrane protein 40	protein-coding
19-PTNLD28-TUMOR_peak_75299	chr4	53588237	53588325	+	2.86960	NA	Intergenic	CpG	8865	NR_003016	677810	Hs.635034	NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
19-PTNLD28-TUMOR_peak_21863	chr11	124706942	124707092	+	2.86960	NA	Intergenic	Intergenic	-28288	NM_022370	64221	Hs.435621	NM_022370	HPRD:10554	ROBO3	HGPPS|HGPS|RBIG1|RIG1	roundabout, axon guidance receptor, homolog 3 (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_41647	chr17	41723251	41723391	+	2.85629	NA	intron (NM_001040002, intron 2 of 3)	CpG	15610	NM_013999	4222	Hs.438	NM_004527	HPRD:02537	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_55247	chr2	119592549	119592685	+	2.85629	NA	Intergenic	CpG	13142	NM_001426	2019	Hs.271977	NM_001426	HPRD:08835	EN1	-	engrailed homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_26862	chr12	123211002	123211115	+	2.85287	NA	Intergenic	MIR|SINE|MIR	4071	NM_032554	27198	Hs.610873	NM_032554		HCAR1	GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_80722	chr5	74063467	74063606	+	2.85287	NA	promoter-TSS (NM_001281302)	promoter-TSS (NM_001281302)	-340	NM_170691	84340	Hs.277154	NM_032380	HPRD:09413	GFM2	EF-G2mt|EFG2|MRRF2|MST027|RRF2|RRF2mt|hEFG2|mEF-G 2	G elongation factor, mitochondrial 2	protein-coding
19-PTNLD28-TUMOR_peak_6516	chr1	147846463	147846628	+	2.83950	NA	intron (NR_102404, intron 17 of 18).2	AluJr|SINE|Alu	-13889	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_39311	chr16	87905246	87905334	+	2.83941	NA	Intergenic	Intergenic	-2190	NM_003486	8140	Hs.513797	NM_003486	HPRD:02552	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1	solute carrier family 7 (amino acid transporter light chain, L system), member 5	protein-coding
19-PTNLD28-TUMOR_peak_15726	chr10	115438875	115438989	+	2.83652	NA	promoter-TSS (NM_001267056)	promoter-TSS (NM_001267056)	11	NM_033340	840	Hs.9216	NM_001227	HPRD:03457	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7, apoptosis-related cysteine peptidase	protein-coding
19-PTNLD28-TUMOR_peak_76544	chr4	109094466	109094632	+	2.83233	NA	intron (NR_029373, intron 1 of 2)	intron (NR_029373, intron 1 of 2)	1273	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	-	LEF1 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65280	chr22	35877317	35877460	+	2.83233	NA	Intergenic	L2b|LINE|L2	-59964	NM_014310	23551	Hs.474711	NM_014310	HPRD:15210	RASD2	MGC:4834|Rhes|TEM2	RASD family, member 2	protein-coding
19-PTNLD28-TUMOR_peak_72164	chr3	165601796	165601901	+	2.83055	NA	Intergenic	L2b|LINE|L2	-46595	NM_000055	590	Hs.420483	NM_000055	HPRD:01519	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
19-PTNLD28-TUMOR_peak_28367	chr13	57309717	57309866	+	2.83055	NA	Intergenic	LTR12C|LTR|ERV1	-405261	NM_001130404	729233	Hs.723090	NM_001130404	ENSG00000204918	PRR20B	-	proline rich 20B	protein-coding
19-PTNLD28-TUMOR_peak_34674	chr15	78201008	78201096	+	2.82737	NA	Intergenic	Intergenic	18136	NR_027024	645752	Hs.546408	NR_027024		LOC645752	-	golgin A6 family, member A pseudogene	pseudo
19-PTNLD28-TUMOR_peak_74811	chr4	25623259	25623439	+	2.82737	NA	Intergenic	Intergenic	-34086	NM_001177998	10568	Hs.479372	NM_006424	HPRD:07251	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb	solute carrier family 34 (type II sodium/phosphate contransporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_30037	chr14	42076122	42076298	+	2.82737	NA	promoter-TSS (NM_152447)	promoter-TSS (NM_152447)	-554	NM_152447	145581	Hs.136893	NM_152447	HPRD:17445	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
19-PTNLD28-TUMOR_peak_32266	chr14	104567164	104567274	+	2.82737	NA	intron (NM_001080464, intron 6 of 15)	intron (NM_001080464, intron 6 of 15)	15196	NM_001080464	374569	Hs.146239	NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT	asparaginase	protein-coding
19-PTNLD28-TUMOR_peak_9597	chr1	205216442	205216530	+	2.82093	NA	intron (NM_001297611, intron 1 of 3)	intron (NM_001297611, intron 1 of 3)	862	NM_001297611	9911	Hs.6360	NM_014858	HPRD:11040	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
19-PTNLD28-TUMOR_peak_98246	chr8	38243605	38243713	+	2.82036	NA	promoter-TSS (NM_001199660)	promoter-TSS (NM_001199660)	-300	NM_001286821	137994	Hs.696457	NM_144652	HPRD:08060	LETM2	-	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
19-PTNLD28-TUMOR_peak_30918	chr14	68614201	68614315	+	2.81403	NA	intron (NM_133510, intron 7 of 10)	intron (NM_133510, intron 7 of 10)	327762	NM_133510	5890	Hs.172587	NM_002877	HPRD:04255	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
19-PTNLD28-TUMOR_peak_4152	chr1	66737471	66737559	+	2.81403	NA	intron (NM_001297440, intron 6 of 15)	intron (NM_001297440, intron 6 of 15)	-60276	NM_001037339	5142	Hs.198072	NM_002600	HPRD:02528	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B, cAMP-specific	protein-coding
19-PTNLD28-TUMOR_peak_72798	chr3	184307072	184307161	+	2.80625	NA	Intergenic	Intergenic	27529	NM_004443	2049	Hs.2913	NM_004443	HPRD:03502	EPHB3	ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
19-PTNLD28-TUMOR_peak_91381	chr7	16958299	16958462	+	2.80509	NA	Intergenic	Intergenic	-36767	NM_176813	155465	Hs.100686	NM_176813	HPRD:16545	AGR3	AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3	protein-coding
19-PTNLD28-TUMOR_peak_83768	chr5	168374436	168374617	+	2.80509	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	-65706	NR_109897	728095	Hs.145601	NR_109897	ENSG00000248222	CTB-174D11.1	-	uncharacterized LOC728095	ncRNA
19-PTNLD28-TUMOR_peak_54202	chr2	95831140	95831255	+	2.80472	NA	promoter-TSS (NM_001282398)	promoter-TSS (NM_001282398)	35	NM_001017396	7549	Hs.590916	NM_021088	HPRD:11834	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
19-PTNLD28-TUMOR_peak_83404	chr5	154150078	154150247	+	2.79590	NA	intron (NM_015315, intron 1 of 18)	intron (NM_015315, intron 1 of 18)	57700	NM_015315	23367	Hs.292078	NM_015315	HPRD:11225	LARP1	LARP	La ribonucleoprotein domain family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_6129	chr1	143658961	143659126	+	2.78739	NA	Intergenic	AluJr|SINE|Alu	-13878	NR_106967	102466225		NR_106967		MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
19-PTNLD28-TUMOR_peak_31835	chr14	94808423	94808567	+	2.78739	NA	Intergenic	L2|LINE|L2	-18807	NM_001756	866	Hs.532635	NM_001756	HPRD:00419	SERPINA6	CBG	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6	protein-coding
19-PTNLD28-TUMOR_peak_1105	chr1	16940330	16940427	+	2.78739	NA	promoter-TSS (NM_017940)	promoter-TSS (NM_017940)	-278	NM_017940	55672	Hs.467587	NM_017940	HPRD:07946	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	neuroblastoma breakpoint family, member 1	protein-coding
19-PTNLD28-TUMOR_peak_18198	chr11	43569320	43569477	+	2.78470	NA	Intergenic	CpG	-11808	NR_031577	100313777		NR_031577	miRBase:MI0003933	MIR670	hsa-mir-670	microRNA 670	ncRNA
19-PTNLD28-TUMOR_peak_1334	chr1	21755172	21755260	+	2.78470	NA	Intergenic	CpG	-11367	NR_046176	84224	Hs.325422	NM_032264	HPRD:10633	NBPF3	AE2	neuroblastoma breakpoint family, member 3	protein-coding
19-PTNLD28-TUMOR_peak_64786	chr22	24979914	24980002	+	2.78470	NA	intron (NM_013430, intron 1 of 15)	intron (NM_013430, intron 1 of 15)	240	NM_013430	2678	Hs.595809	NM_005265	HPRD:01980	GGT1	CD224|D22S672|D22S732|GGT|GGT 1|GTG	gamma-glutamyltransferase 1	protein-coding
19-PTNLD28-TUMOR_peak_25692	chr12	96341822	96341984	+	2.77963	NA	intron (NM_152435, intron 1 of 8)	SVA_F|Other|Other	4832	NM_152435	144193	Hs.424907	NM_152435	HPRD:14605	AMDHD1	-	amidohydrolase domain containing 1	protein-coding
19-PTNLD28-TUMOR_peak_24122	chr12	49658982	49659095	+	2.77949	NA	intron (NM_032704, intron 1 of 3)	CpG	173	NM_032704	84790	Hs.652390	NM_032704	HPRD:06747	TUBA1C	TUBA6|bcm948	tubulin, alpha 1c	protein-coding
19-PTNLD28-TUMOR_peak_96740	chr7	157939684	157939885	+	2.77790	NA	intron (NM_130842, intron 5 of 21)	intron (NM_130842, intron 5 of 21)	292507	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA
19-PTNLD28-TUMOR_peak_49515	chr19	47142896	47143021	+	2.77469	NA	Intergenic	Intergenic	-5019	NM_033258	94235	Hs.283961	NM_033258	HPRD:13593	GNG8	-	guanine nucleotide binding protein (G protein), gamma 8	protein-coding
19-PTNLD28-TUMOR_peak_101595	chr8	144287996	144288143	+	2.77260	NA	Intergenic	Intergenic	-6999	NM_178172	338328	Hs.426410	NM_178172	HPRD:17347	GPIHBP1	GPI-HBP1	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
19-PTNLD28-TUMOR_peak_10845	chr1	231762864	231763027	+	2.77260	NA	intron (NM_001164556, intron 1 of 4)	CpG	384	NM_001164541	27185	Hs.13318	NM_018662	HPRD:05553	DISC1	C1orf136|SCZD9	disrupted in schizophrenia 1	protein-coding
19-PTNLD28-TUMOR_peak_20100	chr11	75379971	75380059	+	2.76362	NA	promoter-TSS (NM_207577)	promoter-TSS (NM_207577)	-536	NM_033063	4135	Hs.585540	NM_033063	HPRD:15989	MAP6	MTAP6|N-STOP|STOP	microtubule-associated protein 6	protein-coding
19-PTNLD28-TUMOR_peak_31912	chr14	96857690	96857836	+	2.76362	NA	promoter-TSS (NM_152327)	promoter-TSS (NM_152327)	-685	NM_152327	122481	Hs.667462	NM_152327	HPRD:10640	AK7	AK 7	adenylate kinase 7	protein-coding
19-PTNLD28-TUMOR_peak_3588	chr1	54085808	54085954	+	2.76362	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	113996	NM_147193	148979	Hs.306691	NM_147193	HPRD:13581	GLIS1	-	GLIS family zinc finger 1	protein-coding
19-PTNLD28-TUMOR_peak_20132	chr11	75977174	75977273	+	2.76171	NA	Intergenic	Intergenic	-59649	NM_004626	7481	Hs.108219	NM_004626	HPRD:04741	WNT11	HWNT11	wingless-type MMTV integration site family, member 11	protein-coding
19-PTNLD28-TUMOR_peak_35518	chr15	101464576	101464750	+	2.75470	NA	intron (NM_024652, intron 1 of 33)	intron (NM_024652, intron 1 of 33)	5203	NM_024652	79705	Hs.407918	NM_024652	HPRD:14319	LRRK1	RIPK6|Roco1	leucine-rich repeat kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_33742	chr15	58791045	58791214	+	2.75470	NA	promoter-TSS (NR_120338)	promoter-TSS (NR_120338)	-195	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LOC101928694	-	uncharacterized LOC101928694	ncRNA
19-PTNLD28-TUMOR_peak_70088	chr3	120170272	120170457	+	2.74100	NA	promoter-TSS (NM_007085)	promoter-TSS (NM_007085)	-446	NM_007085	11167	Hs.269512	NM_007085		FSTL1	FRP|FSL1|MIR198	follistatin-like 1	protein-coding
19-PTNLD28-TUMOR_peak_74499	chr4	10175187	10175318	+	2.72973	NA	Intergenic	HERVK9-int|LTR|ERVK	-56679	NM_017491	9948	Hs.128548	NM_005112	HPRD:09199	WDR1	AIP1|HEL-S-52|NORI-1	WD repeat domain 1	protein-coding
19-PTNLD28-TUMOR_peak_48890	chr19	38837813	38837948	+	2.72973	NA	intron (NM_021185, intron 7 of 28)	AluY|SINE|Alu	11437	NM_021185	57828	Hs.324335	NM_021185	HPRD:12698	CATSPERG	C19orf15	catsper channel auxiliary subunit gamma	protein-coding
19-PTNLD28-TUMOR_peak_75393	chr4	56478515	56478603	+	2.72397	NA	intron (NM_001292045, intron 2 of 8)	AluJr|SINE|Alu	-20180	NM_152401	132954	Hs.223712	NM_152401	HPRD:15109	PDCL2	GCPHLP	phosducin-like 2	protein-coding
19-PTNLD28-TUMOR_peak_106442	chr9	133415022	133415134	+	2.72397	NA	Intergenic	Intergenic	39803	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	ncRNA
19-PTNLD28-TUMOR_peak_62577	chr20	61940986	61941074	+	2.72245	NA	intron (NM_020882, intron 9 of 35)	intron (NM_020882, intron 9 of 35)	16492	NM_020882	57642	Hs.271285	NM_020882	HPRD:17215	COL20A1	bA261N11.4	collagen, type XX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_55096	chr2	114086340	114086446	+	2.71777	NA	Intergenic	Intergenic	-49895	NM_003466	7849	Hs.469728	NM_003466	HPRD:01335	PAX8	-	paired box 8	protein-coding
19-PTNLD28-TUMOR_peak_80712	chr5	73936957	73937067	+	2.71594	NA	non-coding (NR_046318, exon 1 of 2)	non-coding (NR_046318, exon 1 of 2)	237	NM_001256576	8507	Hs.104925	NM_003633	HPRD:05529	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1 (with BTB domain)	protein-coding
19-PTNLD28-TUMOR_peak_19680	chr11	69459118	69459228	+	2.70746	NA	intron (NM_053056, intron 3 of 4)	intron (NM_053056, intron 3 of 4)	3300	NM_053056	595	Hs.523852	NM_053056	HPRD:01346	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
19-PTNLD28-TUMOR_peak_48027	chr19	18300491	18300617	+	2.69748	NA	Intergenic	L1PA7|LINE|L1	-3486	NM_032683	84769	Hs.515254	NM_032683	HPRD:13324	MPV17L2	FKSG24	MPV17 mitochondrial membrane protein-like 2	protein-coding
19-PTNLD28-TUMOR_peak_1098	chr1	16891830	16892007	+	2.69378	NA	intron (NM_017940, intron 27 of 28)	intron (NM_017940, intron 27 of 28)	16509	NR_037446	100500876		NR_037446	miRBase:MI0016076	MIR3675	-	microRNA 3675	ncRNA
19-PTNLD28-TUMOR_peak_22645	chr12	5281087	5281223	+	2.68860	NA	Intergenic	Intergenic	68123	NR_120476	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA
19-PTNLD28-TUMOR_peak_19586	chr11	68110336	68110424	+	2.68860	NA	intron (NM_001291902, intron 1 of 22)	intron (NM_001291902, intron 1 of 22)	30303	NM_002335	4041	Hs.6347	NM_002335	HPRD:04616	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2	low density lipoprotein receptor-related protein 5	protein-coding
19-PTNLD28-TUMOR_peak_34987	chr15	85292036	85292124	+	2.68860	NA	intron (NM_014630, intron 1 of 10)	(CCG)n|Simple_repeat|Simple_repeat	262	NM_014630	9640	Hs.79347	NM_014630	HPRD:10339	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
19-PTNLD28-TUMOR_peak_10931	chr1	233578967	233579077	+	2.68093	NA	Intergenic	Intergenic	115508	NM_032435	84451	Hs.547779	NM_032435	HPRD:10087	KIAA1804	MLK4|dJ862P8.3	mixed lineage kinase 4	protein-coding
19-PTNLD28-TUMOR_peak_40809	chr17	27135060	27135222	+	2.68010	NA	intron (NM_001288637, intron 1 of 4)	intron (NM_001288637, intron 1 of 4)	4312	NM_001288634	55731	Hs.564533	NM_018182	HPRD:07693	FAM222B	C17orf63	family with sequence similarity 222, member B	protein-coding
19-PTNLD28-TUMOR_peak_29031	chr13	110437026	110437158	+	2.67315	NA	exon (NM_003749, exon 1 of 2)	exon (NM_003749, exon 1 of 2)	1822	NM_003749	8660	Hs.442344	NM_003749	HPRD:02878	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
19-PTNLD28-TUMOR_peak_71240	chr3	139277386	139277474	+	2.67315	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	-18759	NM_001130993	5947	Hs.529571	NM_002899	HPRD:07036	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1, cellular	protein-coding
19-PTNLD28-TUMOR_peak_81201	chr5	94620850	94620990	+	2.67118	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	-641	NM_024717	79772	Hs.591248	NM_024717	HPRD:08652	MCTP1	-	multiple C2 domains, transmembrane 1	protein-coding
19-PTNLD28-TUMOR_peak_99469	chr8	90996033	90996121	+	2.67118	NA	intron (NM_002485, intron 1 of 15)	intron (NM_002485, intron 1 of 15)	822	NM_002485	4683	Hs.492208	NM_002485	HPRD:04050	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
19-PTNLD28-TUMOR_peak_90894	chr7	2288639	2288803	+	2.66314	NA	intron (NM_198948, intron 3 of 4)	intron (NM_198948, intron 3 of 4)	6181	NM_198953	4521	Hs.534331	NM_002452	HPRD:02634	NUDT1	MTH1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding
19-PTNLD28-TUMOR_peak_32864	chr15	31517662	31517829	+	2.65386	NA	intron (NM_001243538, intron 2 of 3)	intron (NM_001243538, intron 2 of 3)	5305	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding
19-PTNLD28-TUMOR_peak_89572	chr6	135684960	135685162	+	2.64026	NA	intron (NM_017651, intron 22 of 27)	SVA_D|Other|Other	133842	NM_017651	54806	Hs.386684	NM_017651	HPRD:10597	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
19-PTNLD28-TUMOR_peak_1573	chr1	25039674	25039822	+	2.64026	NA	Intergenic	Intergenic	-32012	NM_013943	25932	Hs.440544	NM_013943	HPRD:05943	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
19-PTNLD28-TUMOR_peak_103927	chr9	78545868	78545956	+	2.64026	NA	intron (NR_120409, intron 1 of 19)	intron (NR_120409, intron 1 of 19)	40352	NM_001190482	5125	Hs.368542	NM_006200	HPRD:08985	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
19-PTNLD28-TUMOR_peak_59897	chr20	14788204	14788352	+	2.64026	NA	intron (NM_080676, intron 5 of 16)	L1PA7|LINE|L1	121886	NR_110318	100379174	Hs.407533	NR_037841	ENSG00000235914	MACROD2-AS1	BA318C17.1|NCRNA00186	MACROD2 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_108048	chrX	42289541	42289689	+	2.64026	NA	Intergenic	L1PA2|LINE|L1	347871	NR_002191	80316	Hs.127689	NM_025210		PPP1R2P9	I-4	protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9	pseudo
19-PTNLD28-TUMOR_peak_57466	chr2	191443696	191443813	+	2.64026	NA	Intergenic	Intergenic	-44286	NM_001142645	100131211	Hs.659824	NM_001142645		TMEM194B	-	transmembrane protein 194B	protein-coding
19-PTNLD28-TUMOR_peak_108041	chrX	41864050	41864181	+	2.64026	NA	Intergenic	L1PA3|LINE|L1	-81828	NM_001126054	8573	Hs.495984	NM_003688	HPRD:02164	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding
19-PTNLD28-TUMOR_peak_58184	chr2	212114027	212114115	+	2.64026	NA	Intergenic	AluSz|SINE|Alu	631776	NR_002763	29034	Hs.658398	NR_002763		CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1 (non-protein coding)	ncRNA
19-PTNLD28-TUMOR_peak_67255	chr3	26445349	26445437	+	2.64026	NA	Intergenic	L1HS|LINE|L1	-218907	NM_052953	116135	Hs.517868	NM_052953	HPRD:14318	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
19-PTNLD28-TUMOR_peak_27468	chr13	24255034	24255182	+	2.64026	NA	Intergenic	Intergenic	101609	NM_001204458	55504	Hs.149168	NM_018647	HPRD:05838	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	tumor necrosis factor receptor superfamily, member 19	protein-coding
19-PTNLD28-TUMOR_peak_77115	chr4	135728611	135728699	+	2.64026	NA	Intergenic	Intergenic	-605752	NM_001114734	132430	Hs.49889	NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein, cytoplasmic 4-like	protein-coding
19-PTNLD28-TUMOR_peak_12428	chr10	24451524	24451701	+	2.64026	NA	intron (NM_001098500, intron 2 of 18)	MLT1F|LTR|ERVL-MaLR	-46108	NM_001282767	56243	Hs.445885	NM_019590	HPRD:11132	KIAA1217	SKT	KIAA1217	protein-coding
19-PTNLD28-TUMOR_peak_107555	chrX	11912607	11912695	+	2.64026	NA	Intergenic	MER5B|DNA|hAT-Charlie	134916	NM_006800	10943	Hs.655288	NM_006800	HPRD:05344	MSL3	MSL3L1	male-specific lethal 3 homolog (Drosophila)	protein-coding
19-PTNLD28-TUMOR_peak_59664	chr20	5433970	5434058	+	2.64026	NA	Intergenic	SVA_A|Other|Other	-7620	NR_038239	100507629	Hs.121383	NR_038239	ENSG00000226995	LINC00658	-	long intergenic non-protein coding RNA 658	ncRNA
19-PTNLD28-TUMOR_peak_56018	chr2	138829921	138830117	+	2.64026	NA	Intergenic	Intergenic	108211	NM_001024075	3176	Hs.42151	NM_006895	HPRD:05575	HNMT	HMT|HNMT-S1|HNMT-S2	histamine N-methyltransferase	protein-coding
19-PTNLD28-TUMOR_peak_58734	chr2	229290520	229290678	+	2.64026	NA	Intergenic	L1PA2|LINE|L1	-244238	NM_030623	80309	Hs.436306	NM_030623	HPRD:18052	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
19-PTNLD28-TUMOR_peak_26372	chr12	112788461	112788640	+	2.64026	NA	intron (NM_001109662, intron 1 of 75)	intron (NM_001109662, intron 1 of 75)	31346	NM_001109662	283450	Hs.530943	NM_173813	HPRD:08170	HECTD4	C12orf51|POTAGE	HECT domain containing E3 ubiquitin protein ligase 4	protein-coding
19-PTNLD28-TUMOR_peak_100421	chr8	121969019	121969171	+	2.64026	NA	Intergenic	Intergenic	-144786	NM_021021	6641	Hs.46701	NM_021021	HPRD:02490	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	protein-coding
19-PTNLD28-TUMOR_peak_106020	chr9	126807843	126807973	+	2.64026	NA	Intergenic	CpG	34019	NM_004789	9355	Hs.696425	NM_004789	HPRD:04786	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
19-PTNLD28-TUMOR_peak_27889	chr13	40009004	40009139	+	2.64026	NA	intron (NM_005780, intron 2 of 3)	AluYb8|SINE|Alu	168285	NM_005780	10186	Hs.507798	NM_005780	HPRD:09464	LHFP	-	lipoma HMGIC fusion partner	protein-coding
19-PTNLD28-TUMOR_peak_42154	chr17	47817154	47817297	+	2.64026	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	24293	NM_030802	81558	Hs.514308	NM_030802	HPRD:17432	FAM117A	-	family with sequence similarity 117, member A	protein-coding
19-PTNLD28-TUMOR_peak_59502	chr20	2306607	2306695	+	2.64026	NA	intron (NM_003245, intron 8 of 12)	intron (NM_003245, intron 8 of 12)	30038	NM_003245	7053	Hs.2022	NM_003245	HPRD:02584	TGM3	TGE	transglutaminase 3	protein-coding
19-PTNLD28-TUMOR_peak_99393	chr8	86566492	86566672	+	2.64026	NA	TTS (NR_003594)	TTS (NR_003594)	1323	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_76537	chr4	108939869	108939957	+	2.64026	NA	intron (NM_001184705, intron 3 of 8)	intron (NM_001184705, intron 3 of 8)	29043	NM_005327	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_56696	chr2	163260566	163260654	+	2.64026	NA	intron (NM_033272, intron 9 of 15)	intron (NM_033272, intron 9 of 15)	60027	NM_012198	25801	Hs.377894	NM_012198		GCA	GCL	grancalcin, EF-hand calcium binding protein	protein-coding
19-PTNLD28-TUMOR_peak_50741	chr2	620176	620296	+	2.64026	NA	Intergenic	Intergenic	57203	NM_152834	129787	Hs.43899	NM_152834		TMEM18	-	transmembrane protein 18	protein-coding
19-PTNLD28-TUMOR_peak_40089	chr17	8218653	8218775	+	2.64026	NA	intron (NM_173728, intron 6 of 15)	intron (NM_173728, intron 6 of 15)	4574	NM_025014	22899	Hs.443109	NM_025014	HPRD:10535	ARHGEF15	ARGEF15|E5|Ephexin5|Vsm-RhoGEF	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding
19-PTNLD28-TUMOR_peak_83822	chr5	169527512	169527672	+	2.64026	NA	Intergenic	Intergenic	-5325	NM_012188	2299	Hs.87236	NM_012188	HPRD:03057	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding
19-PTNLD28-TUMOR_peak_22236	chr11	131212161	131212452	+	2.64026	NA	Intergenic	Intergenic	-28065	NM_001048209	50863	Hs.504352	NM_016522	HPRD:06398	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
19-PTNLD28-TUMOR_peak_9842	chr1	208274336	208274505	+	2.64026	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	143245	NM_025179	5362	Hs.497626	NM_025179	HPRD:03033	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
19-PTNLD28-TUMOR_peak_50702	chr2	10248	10442	+	2.64026	NA	Intergenic	(CCCTAA)n|Simple_repeat|Simple_repeat	36243	NM_001077710	642273	Hs.8379	NM_001077710		FAM110C	-	family with sequence similarity 110, member C	protein-coding
19-PTNLD28-TUMOR_peak_33179	chr15	40713240	40713328	+	2.64026	NA	3' UTR (NM_001159508, exon 11 of 11)	3' UTR (NM_001159508, exon 11 of 11)	15598	NM_001159508	3712	Hs.513646	NM_002225	HPRD:09516	IVD	ACAD2	isovaleryl-CoA dehydrogenase	protein-coding
19-PTNLD28-TUMOR_peak_109015	chrX	102840450	102840538	+	2.64026	NA	promoter-TSS (NM_024863)	promoter-TSS (NM_024863)	75	NM_001006937	79921	Hs.194329	NM_024863	HPRD:06537	TCEAL4	NPD017|WEX7	transcription elongation factor A (SII)-like 4	protein-coding
19-PTNLD28-TUMOR_peak_107649	chrX	16118902	16119034	+	2.64026	NA	Intergenic	Intergenic	-22456	NM_005314	2925	Hs.567282	NM_005314		GRPR	BB2	gastrin-releasing peptide receptor	protein-coding
19-PTNLD28-TUMOR_peak_44424	chr18	7325232	7325370	+	2.64026	NA	Intergenic	MIRb|SINE|MIR	94164	NM_001105581	339291	Hs.647588	NM_001105581	ENSG00000206422	LRRC30	-	leucine rich repeat containing 30	protein-coding
19-PTNLD28-TUMOR_peak_48255	chr19	22700216	22700333	+	2.64026	NA	Intergenic	Intergenic	10477	NR_110427	101929124	Hs.589610	NR_110427	ENSG00000260599	LOC101929124	-	uncharacterized LOC101929124	ncRNA
19-PTNLD28-TUMOR_peak_92396	chr7	46641708	46641796	+	2.64026	NA	Intergenic	Intergenic	-680881	NM_001013398	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
19-PTNLD28-TUMOR_peak_66172	chr3	1210685	1210773	+	2.64026	NA	intron (NM_001289080, intron 2 of 22)	L2|LINE|L2	76387	NM_001289081	27255	Hs.387300	NM_014461	HPRD:06242	CNTN6	NB3	contactin 6	protein-coding
19-PTNLD28-TUMOR_peak_34251	chr15	70189090	70189190	+	2.64026	NA	Intergenic	Intergenic	61567	NR_026764	414926	Hs.569502	NR_026764	ENSG00000259703	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
19-PTNLD28-TUMOR_peak_60124	chr20	21008029	21008124	+	2.61585	NA	Intergenic	Intergenic	-98548	NM_001163022	55857	Hs.187635	NM_018474		KIZ	C20orf19|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
19-PTNLD28-TUMOR_peak_65883	chr22	45088440	45088602	+	2.59246	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	-9557	NM_181333	55615	Hs.102336	NM_015366	HPRD:18696	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5 (renal)	protein-coding
19-PTNLD28-TUMOR_peak_41192	chr17	36112658	36112746	+	2.58991	NA	Intergenic	L2b|LINE|L2	-7606	NM_001165923	6928	Hs.191144	NM_000458	HPRD:08926	HNF1B	FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
19-PTNLD28-TUMOR_peak_52359	chr2	42997699	42997859	+	2.58991	NA	intron (NM_012205, intron 4 of 9)	intron (NM_012205, intron 4 of 9)	-6378	NM_148962	165140	Hs.168439	NM_148962	HPRD:17812	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid (OXE) receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_92202	chr7	43236103	43236191	+	2.54777	NA	intron (NM_015052, intron 2 of 29)	intron (NM_015052, intron 2 of 29)	45653	NR_037508	100500829		NR_037508		MIR3943	-	microRNA 3943	ncRNA
19-PTNLD28-TUMOR_peak_24257	chr12	51986169	51986276	+	2.54777	NA	intron (NM_014191, intron 1 of 26)	intron (NM_014191, intron 1 of 26)	1202	NM_014191	6334	Hs.436550	NM_014191	HPRD:09006	SCN8A	CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4	sodium channel, voltage gated, type VIII, alpha subunit	protein-coding
19-PTNLD28-TUMOR_peak_15100	chr10	99187708	99187813	+	2.53333	NA	intron (NM_002629, intron 1 of 3)	intron (NM_002629, intron 1 of 3)	1733	NM_002629	5223	Hs.632918	NM_002629	HPRD:01392	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1 (brain)	protein-coding
19-PTNLD28-TUMOR_peak_60370	chr20	29612198	29612350	+	2.52229	NA	intron (NR_003579, intron 1 of 7)	CpG	395	NR_003579	284802	Hs.653099	NM_207350	HPRD:17570	FRG1B	C20orf80|bA348I14.2	FSHD region gene 1 family, member B	pseudo
19-PTNLD28-TUMOR_peak_99414	chr8	86804121	86804257	+	2.51929	NA	promoter-TSS (NR_003594).8	promoter-TSS (NR_003594).8	-592	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_95398	chr7	131689589	131689677	+	2.50342	NA	Intergenic	Intergenic	94654	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
19-PTNLD28-TUMOR_peak_107112	chrUn_gl000220	117768	117984	+	2.48490	NA	non-coding (NR_046235, exon 1 of 1)	non-coding (NR_046235, exon 1 of 1)	5851	NR_003285	100008587		NR_003285		RNA5-8S5	RN5-8S1	RNA, 5.8S ribosomal 5	rRNA
19-PTNLD28-TUMOR_peak_50062	chr19	51814164	51814357	+	2.47993	NA	promoter-TSS (NM_001101372)	promoter-TSS (NM_001101372)	-842	NM_001101372	402665	Hs.546636	NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
19-PTNLD28-TUMOR_peak_105800	chr9	123156701	123156789	+	2.47993	NA	intron (NM_001011649, intron 35 of 36)	intron (NM_001011649, intron 35 of 36)	-149417	NR_029604	406939		NR_029604	miRBase:MI0000262	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
19-PTNLD28-TUMOR_peak_75942	chr4	81951883	81952098	+	2.47993	NA	promoter-TSS (NM_001201)	promoter-TSS (NM_001201)	-129	NM_001201	651	Hs.387411	NM_001201	HPRD:00208	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
19-PTNLD28-TUMOR_peak_42390	chr17	53572716	53572844	+	2.47993	NA	Intergenic	Intergenic	-73439	NM_012329	23531	Hs.463483	NM_012329	HPRD:06835	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation-associated	protein-coding
19-PTNLD28-TUMOR_peak_101578	chr8	144099352	144099482	+	2.47043	NA	promoter-TSS (NM_002346)	promoter-TSS (NM_002346)	390	NR_026913	100133669	Hs.195309	NR_026913		LOC100133669	-	uncharacterized LOC100133669	ncRNA
19-PTNLD28-TUMOR_peak_6829	chr1	151937067	151937188	+	2.45970	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	29587	NM_002966	6281	Hs.143873	NM_002966	HPRD:00232	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
19-PTNLD28-TUMOR_peak_91428	chr7	18125891	18126040	+	2.45310	NA	promoter-TSS (NM_001204144)	promoter-TSS (NM_001204144)	-607	NM_001204144	9734	Hs.196054	NM_014707	HPRD:05944	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
19-PTNLD28-TUMOR_peak_99406	chr8	86756325	86756528	+	2.44580	NA	TTS (NR_003594).5	TTS (NR_003594).5	1335	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_9654	chr1	205545412	205545500	+	2.44366	NA	intron (NM_181644, intron 1 of 9)	intron (NM_181644, intron 1 of 9)	7344	NM_181644	148808	Hs.567714	NM_181644	HPRD:13228	MFSD4	UNQ3064	major facilitator superfamily domain containing 4	protein-coding
19-PTNLD28-TUMOR_peak_96317	chr7	150662774	150662897	+	2.44366	NA	intron (NM_000238, intron 2 of 14)	intron (NM_000238, intron 2 of 14)	-9918	NM_172057	3757	Hs.647099	NM_000238	HPRD:01069	KCNH2	ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding
19-PTNLD28-TUMOR_peak_104422	chr9	91275726	91275889	+	2.43823	NA	Intergenic	HAL1|LINE|L1	-8732	NM_001100111	286238	Hs.434185	NM_001100111		LOC286238	-	uncharacterized LOC286238	protein-coding
19-PTNLD28-TUMOR_peak_99412	chr8	86802161	86802364	+	2.41359	NA	TTS (NR_003594).8	TTS (NR_003594).8	1335	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_46356	chr18	74966909	74966997	+	2.40754	NA	intron (NM_001480, intron 1 of 2)	intron (NM_001480, intron 1 of 2)	4945	NM_001480	2587	Hs.272191	NM_001480		GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
19-PTNLD28-TUMOR_peak_72592	chr3	179446119	179446245	+	2.40065	NA	intron (NM_003940, intron 8 of 20)	SVA_D|Other|Other	75249	NM_003940	8975	Hs.175322	NM_003940	HPRD:04666	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding
19-PTNLD28-TUMOR_peak_99415	chr8	86814354	86814557	+	2.37654	NA	TTS (NR_003594).9	TTS (NR_003594).9	1335	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
19-PTNLD28-TUMOR_peak_15425	chr10	105413455	105413570	+	2.34957	NA	intron (NM_014631, intron 8 of 13)	intron (NM_014631, intron 8 of 13)	-93025	NR_038940	100505839	Hs.655149	NR_038940		SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_65667	chr22	41488522	41488620	+	2.34533	NA	promoter-TSS (NR_031694)	promoter-TSS (NR_031694)	-43	NM_001429	2033	Hs.517517	NM_001429	HPRD:04078	EP300	KAT3B|RSTS2|p300	E1A binding protein p300	protein-coding
19-PTNLD28-TUMOR_peak_100567	chr8	124878184	124878272	+	2.32428	NA	intron (NM_001039112, intron 1 of 40)	L1PA2|LINE|L1	14001	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1-like family member 6	protein-coding
19-PTNLD28-TUMOR_peak_1261	chr1	20478896	20478984	+	2.31320	NA	Intergenic	Intergenic	13117	NM_022819	64600	Hs.302034	NM_022819	HPRD:07499	PLA2G2F	-	phospholipase A2, group IIF	protein-coding
19-PTNLD28-TUMOR_peak_83246	chr5	150431378	150431526	+	2.29300	NA	intron (NM_001258454, intron 7 of 17)	intron (NM_001258454, intron 7 of 17)	13240	NM_001258456	10318	Hs.355141	NM_006058	HPRD:09216	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
19-PTNLD28-TUMOR_peak_101339	chr8	139888895	139889062	+	2.27457	NA	intron (NM_152888, intron 3 of 64)	intron (NM_152888, intron 3 of 64)	37258	NM_152888	169044	Hs.117169	NM_152888	HPRD:09885	COL22A1	-	collagen, type XXII, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_25456	chr12	81330601	81330842	+	2.27457	NA	intron (NM_004664, intron 1 of 5)	CpG	973	NM_004664	8825	Hs.144333	NM_004664	HPRD:04542	LIN7A	LIN-7A|LIN7|MALS-1|TIP-33|VELI1	lin-7 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_18064	chr11	35552136	35552224	+	2.27293	NA	promoter-TSS (NM_001282675)	promoter-TSS (NM_001282675)	-332	NM_001282675	25891	Hs.55044	NM_015430	HPRD:07104	PAMR1	DKFZP586H2123|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
19-PTNLD28-TUMOR_peak_62574	chr20	61927110	61927219	+	2.25536	NA	intron (NM_020882, intron 2 of 35)	intron (NM_020882, intron 2 of 35)	2626	NM_020882	57642	Hs.271285	NM_020882	HPRD:17215	COL20A1	bA261N11.4	collagen, type XX, alpha 1	protein-coding
19-PTNLD28-TUMOR_peak_52161	chr2	37898150	37898323	+	2.24470	NA	intron (NM_001270436, intron 1 of 1)	CpG	1106	NM_006449	10602	Hs.369574	NM_006449	HPRD:09364	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
19-PTNLD28-TUMOR_peak_1290	chr1	20959858	20959989	+	2.23301	NA	promoter-TSS (NM_032409)	promoter-TSS (NM_032409)	-25	NM_032409	65018	Hs.389171	NM_032409	HPRD:10514	PINK1	BRPK|PARK6	PTEN induced putative kinase 1	protein-coding
19-PTNLD28-TUMOR_peak_80464	chr5	69113206	69113328	+	2.22632	NA	Intergenic	Intergenic	-106913	NR_027386	653188	Hs.631974	NR_027386	ENSG00000253203	GUSBP3	-	glucuronidase, beta pseudogene 3	pseudo
19-PTNLD28-TUMOR_peak_73831	chr4	1422647	1422735	+	2.20226	NA	Intergenic	Intergenic	-22461	NM_001290079	54729	Hs.526396	NM_001290079		NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
19-PTNLD28-TUMOR_peak_63929	chr21	45604318	45604485	+	2.19775	NA	Intergenic	Intergenic	50907	NM_004649	8209	Hs.413482	NM_004649	HPRD:09044	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding
19-PTNLD28-TUMOR_peak_90166	chr6	155522682	155522819	+	2.13231	NA	intron (NM_012454, intron 13 of 25)	intron (NM_012454, intron 13 of 25)	-15347	NM_001010927	26230	Hs.586279	NM_012454	HPRD:05273	TIAM2	STEF|TIAM-2	T-cell lymphoma invasion and metastasis 2	protein-coding
19-PTNLD28-TUMOR_peak_33534	chr15	50474759	50474922	+	2.13231	NA	exon (NM_003645, exon 1 of 10)	exon (NM_003645, exon 1 of 10)	447	NM_003645	11001	Hs.11729	NM_003645	HPRD:11935	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	solute carrier family 27 (fatty acid transporter), member 2	protein-coding
19-PTNLD28-TUMOR_peak_53623	chr2	75788045	75788225	+	2.10930	NA	promoter-TSS (NM_001135032)	promoter-TSS (NM_001135032)	-43	NM_001135032	84141	Hs.302346	NM_032181	HPRD:07827	EVA1A	FAM176A|TMEM166	eva-1 homolog A (C. elegans)	protein-coding
19-PTNLD28-TUMOR_peak_79291	chr5	31106985	31107073	+	2.10930	NA	Intergenic	Intergenic	-86733	NM_004932	1004	Hs.124776	NM_004932	HPRD:04305	CDH6	CAD6|KCAD	cadherin 6, type 2, K-cadherin (fetal kidney)	protein-coding
19-PTNLD28-TUMOR_peak_13750	chr10	61120387	61120537	+	2.08849	NA	intron (NM_001001971, intron 1 of 11)	intron (NM_001001971, intron 1 of 11)	1890	NM_001001971	220965	Hs.607594	NM_198215	HPRD:16875	FAM13C	FAM13C1	family with sequence similarity 13, member C	protein-coding
19-PTNLD28-TUMOR_peak_11449	chr1	245468089	245468229	+	2.08668	NA	intron (NM_018012, intron 2 of 14)	FRAM|SINE|Alu	149872	NM_018012	55083	Hs.368096	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
19-PTNLD28-TUMOR_peak_16754	chr11	3520758	3520887	+	2.08067	NA	Intergenic	L2|LINE|L2	-107677	NR_044999	10821	Hs.637689	NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor, family 7, subfamily E, member 12 pseudogene	pseudo
19-PTNLD28-TUMOR_peak_80177	chr5	60866587	60866779	+	2.06416	NA	Intergenic	Intergenic	-66953	NM_173667	285668	Hs.683866	NM_173667	HPRD:09962	C5orf64	-	chromosome 5 open reading frame 64	protein-coding
19-PTNLD28-TUMOR_peak_50152	chr19	53203035	53203131	+	2.04210	NA	Intergenic	Intergenic	-9249	NM_001277949	55769	Hs.467210	NM_018300	HPRD:01935	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
19-PTNLD28-TUMOR_peak_27601	chr13	28713216	28713357	+	2.02554	NA	promoter-TSS (NR_029383)	promoter-TSS (NR_029383)	25	NR_029383	100288730	Hs.123191	NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
19-PTNLD28-TUMOR_peak_21081	chr11	110301525	110301635	+	2.01713	NA	intron (NM_004109, intron 1 of 3)	intron (NM_004109, intron 1 of 3)	919	NM_004109	2230	Hs.744	NM_004109	HPRD:00059	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
19-PTNLD28-TUMOR_peak_48724	chr19	36337070	36337158	+	2.00754	NA	intron (NM_004646, intron 11 of 28)	CpG-13536	5781	NM_004646	4868	Hs.122186	NM_004646	HPRD:04094	NPHS1	CNF|NPHN|nephrin	nephrosis 1, congenital, Finnish type (nephrin)	protein-coding
	Done annotating peaks file